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"UniProtKB:O34311", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00563", "PF00990", "PF03707" ], "protein_name": "Diguanylate cyclase DgcW", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ff65bc18c99eefa2297f055aa3ba9e347a740444caafd14c20961b971b2cb579", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEIHVTYNTTLICLSILIACTASYISLELSRKVTINTGLKSKIWLIGGSLIMGFGIWSMHFVGMMAVHMEMPMEYEFMPLMAAIGASVSGSFVSLYFVSRHILTYYRLLTGSVVLGASIASMHYIGMSAISRVMIIYEPILFTVSIIIAIAASFVSLKIFFDLAVKKHSEHLIFYKGVSSIVMGIGISGMHYTGMLAATFHKDMAPPGSHMEVQTFHWSIFVTLIIFCIQTLLLFSSHADRKFIKQSERIKDNEQRFQSLIVHNIDAIFILSLEGDIISSNHAGEEMISKFGFSMHDWRNYTSLKVKRLFEQVKKDKQAMNSDSDLITEKGQFHLNITLIPVEVNQELDSIYVICKDMTKQYKAEKEIHRMAHYDSLTDLPNRRHAISHLTKVLNREHSLHYNTVVFFLDLNRFKVINDALGHNVGDQLLQFAAKRLSSVVPDNGFIARLGGDEFIIILTDANTGTGEADVLARKIIQKFKKPFKIQDHTLVTSVSIGIAISPKDGTDGLELMKKADMAMYAAKERNKSKYRYYSFSIGNKETVKLNQEMVLREAIENDRFVLHYQPQFSVKKQKMTGAEALIRLVTPDGQLRPPGEFIGVAEETGLIIDIGKWIIDEACKQARIWHDKGYDLSVAINISARQFQSKDLIPLIKDTLNKYQLPPQLLEVEVTESMTMDNLNHSKKVLSSLTELGIRISIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDIQTHPKSEQITGAIIAMGHQLSLQVIAEGVENAAQKQLLFEKGCDHLQGFFFSRPIPPEQFEQFIIEQPSQ", "sequence_length": 800, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ff65bc18c99eefa2297f055aa3ba9e347a740444caafd14c20961b971b2cb579", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O34311.json", "taxon_id": "224308", "uniprot_accession": "O34311", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ykui-c-terminal-ipr018842.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ykui-c-terminal-ipr018842.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ykui-c-pf10388.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10388", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ykui-c-pf10388.yaml" } ], "pfam_ids": [ "PF00563", "PF10388" ], "protein_name": "Uncharacterized EAL-domain containing protein YkuI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDPLDILTNIDDVLPYYQAIFSAEEQKVVGYEVLGRILADSEIQSLGPFFLDAGIPEEYKLEVDNRIIRQALDRFLEADSDLLIFMNQDANLLMLDHGESFLELLKEYEAKGIELHRFVLEITEHNFEGDIEQLYHMLAYYRTYGIKIAVDNIGKESSNLDRIALLSPDLLKIDLQALKVSQPSPSYEHVLYSISLLARKIGAALLYEDIEANFQLQYAWRNGGRYFQGYYLVSPSETFLERDVLKQRLKTEFHQFITHEKKKLETVYEHSEQFYKRVHQAVTSLRKNNLSSDDDFIKKLAEELTDCSFRIYMCDEEGDQLTGNVFKQDGEWIYQPEYAEKNWSWRPYFLENIMRMRNLRKGFFSDLYSDLETGEMIRTFSYPMDDQMYLFIDLPYSYLYEQDGLI", "sequence_length": 407, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "43cd30e1cb7fba0b2bd9dfe44a3d69b5d5cbd84b10666b289af3f9d992dce06e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O35014.json", "taxon_id": "224308", "uniprot_accession": "O35014", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3330-pf11809.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11809", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3330-pf11809.yaml" } ], "pfam_ids": [ "PF00563", "PF11809" ], "protein_name": "Transposon Tn21 modulator protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVVAEGVETPDCLAWLRQAGCDTVQGFLFARPMPAAAFVGFVNQWRNTTMNANEPSTSCCVCCKEIPLDAAFTPEGAEYVEHFCGLECYQRFQARASTATETSVKPDACDSPPSG", "sequence_length": 116, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f71854da473aa9092b78923dd40c0249fda757ea8e480568e32d908cc4d0ad4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P04162.json", "taxon_id": "562", "uniprot_accession": "P04162", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/eal-pf00563.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF00563", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/eal-pf00563.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ggdef-pf00990.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00990", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ggdef-pf00990.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gapes4-pf17157.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17157", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gapes4-pf17157.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P13518", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00563", "PF00990", "PF17157" ], "protein_name": "RNase E specificity factor CsrD", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8f65aeb22dcbf79d04db00ea9c8e3d5d2b11916bf30af5a13ddbecd1e8ec5304", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQAVATAIDTHLVSNDFSVLRPQITELMMSADIVRVDLLHGDKQVYTLARNGSYRPVGSSDLFRELSVPLIKHPGMSLRLVYQDPMGNYFHSLMTTAPLTGAIGFIIVMLFLAVRWLQRQLAGQELLETRATRILNGERGSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDTLIRSYAAQDVKTGLNNRLFFDNQLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHSQVEEQFFTLTNLLSTFMMRYPGALLARYHRSDFAALLPHRTLKEAESIAGQLIKAVDTLPNNKMLDRDDMIHIGICAWRSGQDTEQVMEHAESATRNAGLQGGNSWAIYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAVTREGQVHHRELMCRIFDGNEEVSSAEYMPMVLQFGLSEEYDRLQISRLIPLLRYWPEENLAIQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIIELAEADVGQHISRLQPVIRLVNALGVRVAVNQAGLTLVSTSWIKELNVELLKLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQVYATGVRSRSEWQTLIQRGVTGGQGDFFASSQPLDTNVKKYSQRYSV", "sequence_length": 646, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8f65aeb22dcbf79d04db00ea9c8e3d5d2b11916bf30af5a13ddbecd1e8ec5304", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P13518.json", "taxon_id": "83333", "uniprot_accession": "P13518", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P21514", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00196", "PF00563" ], "protein_name": "Cyclic di-GMP phosphodiesterase PdeL", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "afcc93183e6b1f485b961251589f72a02236475d643a7f81c7b13d23f1ab2699", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNSCDFRVFLQEFGTTVHLSLPGSVSEKERLLLKLLMQGMSVTEISQYRNRSAKTISHQKKQLFEKLGIQSDITFWRDIFFQYNPEIISATGSNSHRYINDNHYHHIVTPEAISLALENHEFKPWIQPVFCAQTGVLTGCEVLVRWEHPQTGIIPPDQFIPLAESSGLIVIMTRQLMKQTADILMPVKHLLPDNFHIGINVSAGCFLAAGFEKECLNLVNKLGNDKIKLVLELTERNPIPVTPEARAIFDSLHQHNITFALDDFGTGYATYRYLQAFPVDFIKIDKSFVQMASVDEISGHIVDNIVELARKPGLSIVAEGVETQEQADLMIGKGVHFLQGYLYSPPVPGNKFISEWVMKAGG", "sequence_length": 362, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "afcc93183e6b1f485b961251589f72a02236475d643a7f81c7b13d23f1ab2699", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P21514.json", "taxon_id": "83333", "uniprot_accession": "P21514", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mase1-ipr007895.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007895", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mase1-ipr007895.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mase1-pf05231.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mase1-pf05231.yaml" } ], "pfam_ids": [ "PF00563", "PF05231" ], "protein_name": "Probable cyclic di-GMP phosphodiesterase PdeA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFVEHNLIKNIKIFTLAFTLTVVLIQLSRFISPLAIIHSSYIFLAWMPLCVMLSILFIFGWRGVVPVLCGMFCTNLWNFHLSFLQTAVMLGSQTFVVLCACAILRWQLGTRWRYGLTSRYVWQRLFWLGLVTPIGIKCSMYLVGSFFDFPLKISTFFGDADAIFTVVDLLSLFTAVLIYNMLFYYLTRMIVSPHFAQILWRRDIAPSLGKEKRAFTLSWLAALSVLLLLLCTPYENDFIAGYLVPVFFIIFTLGVGKLRYPFLNLTWAVSTLCLLNYNQNFLQGVETEYSLAFILAVLISFSVCLLYMVRIYHRSEWLNRRWHLQALTDPLTLLPNFRALEQAPEQEAGKSFCCLRIDNLEFMSRHYGLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILNSRQIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQTTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGEGYDEILARLKYDGGIMTPDKFLPLIAQFNLSARFDLQVLESLLKWLATHPCDKKGPRFSVNLMPLTLLQKNIAGRIIRLFKRYHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADIIKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGYLIGRPQPLAD", "sequence_length": 729, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fe122725c82d2f94aa817362f148b88ba389667c3e4d338c34099d35c63d2839", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P23842.json", "taxon_id": "83333", "uniprot_accession": "P23842", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/eal-domain-this-domain-is-found-in-diverse-bacterial-signaling-protein-cd01948.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd01948", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/eal-domain-this-domain-is-found-in-diverse-bacterial-signaling-protein-cd01948.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/putative-cyclic-diguanylate-phosphodiesterase-css-motif-containing-dom-ipr024744.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024744", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/putative-cyclic-diguanylate-phosphodiesterase-css-motif-containing-dom-ipr024744.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/css-motif-pf12792.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12792", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/css-motif-pf12792.yaml" }, { 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"MKLNATYIKIRDKWWGLPLFLPSLILPIFAHINTFAHISSGEVFLFYLPLALMISMMMFFSWAALPGIALGIFVRKYAELGFYETLSLTANFIIIIILCWGGYRVFTPRRNNVSHGDTRLISQRIFWQIVFPATLFLILFQFAAFVGLLASRENLVGVMPFNLGTLINYQALLVGNLIGVPLCYFIIRVVRNPFYLRSYYSQLKQQVDAKVTKKEFALWLLALGALLLLLCMPLNEKSTIFSTNYTLSLLLPLMMWGAMRYGYKLISLLWAVVLMISIHSYQNYIPIYPGYTTQLTITSSSYLVFSFIVNYMAVLATRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDAPWSALCYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQERITALDSHLKQFRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAPENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGDVYHEILLRMKGENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAHRFAINLSPTSVCQARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTGYASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMLVVAEYVENEEIREAVLSLGIDYMQGYLIGKPQPLIDTLNEIEPIRESA", "sequence_length": 747, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8cd98f676ffd24d24cc2e5300446bec1d3c255a3f79319e0146be876a3c68e5b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P77172.json", "taxon_id": "83333", "uniprot_accession": "P77172", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/putative-cyclic-diguanylate-phosphodiesterase-css-motif-containing-dom-ipr024744.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024744", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/putative-cyclic-diguanylate-phosphodiesterase-css-motif-containing-dom-ipr024744.yaml" } ], "pfam_ids": [ "PF00563", "PF12792" ], "protein_name": "Probable cyclic di-GMP phosphodiesterase PdeB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRTRHLVGLISGVLILSVLLPVGLSIWLAHQQVETSFIEELDTYSSRVAIRANKVATQGKDALQELERWQGAACSEAHLMEMRRVSYSYRYIQEVAYIDNNVPQCSSLEHESPPDTFPEPGKISKDGYRVWLTSHNDLGIIRYMVAMGTAHYVVMIDPASFIDVIPYSSWQIDAAIIGNAHNVVITSSDEIAQGIITRLQKTPGEHIENNGIIYDILPLPEMNISIITWASTKMLQKGWHRQVFIWLPLGLVIGLLAAMFVLRILRRIQSPHHRLQDAIENRDICVHYQPIVSLANGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEPLTLLIIRSVFEDMGDWLRQHPQQHISINLESPVLTSEKIPQLLRDMINHYQVNPRQIALELTEREFADPKTSAPIISRYREAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFVDALEYKNVTPHIIEMAKTLKLKMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKEDFLRWAEQHL", "sequence_length": 516, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2a15102e7934d3c977224d557e46b489ef0e5216948b6bd0d481ce02b847e2e3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P77473.json", "taxon_id": "83333", "uniprot_accession": "P77473", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/mhyt-pf03707.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03707", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/mhyt-pf03707.yaml" } ], "pfam_ids": [ "PF00563", "PF00990", "PF03707" ], "protein_name": "Cyclic di-GMP phosphodiesterase NbdA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPFLPGKMPKPAVCRRPATSFHADLAGGSRYLYWKHNATPSPHPRRPRVFRVQGDTAMDWQGLRFLGESPVDGYVLQNCTYSPSLVALAFLVACLAGYTALDMVERVGNSLSHPRLWQWIGAFCLGSGIWATHFVAMLAFHAPIALRYDLPITGLSLLIAVAASYLTMYMTARPRFGLLPCLLAACCIGLGIAAMHYTGMAAMRSVATQYYQPSLFALSVLIAIGAAFTALAAVPYLRGRRSARYRYMKLIASLLLAGAIAAMHFTGMAALVLSVPAGTPLELQASADSLRLGWLTGVLASAIAACGIWAAWSEKQRERRLSENSRVNALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVMFLDLDHFKRINDSLGHDSGDQLLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQDHEAHILSQRLMQKMKEPIALDGRTLVMTASVGVSLYPNDGEQCEELLKNAGLALHQSKACGRNNAQFFSRQLLVRATQELQMEEELRQALRDDQLELHYQPILALADGEVHQLEALVRWRHPTQGLLGPDRFIGLAEANGMIDQLDDWVLRRACRDLRSLHLAGHERLRVAVNCCASNLGRASLVDEVRHALEQAGLAACFLELEVTEDALMYNIDQTIPLLERLRELGVSLSIDDFGTGYSSLAYLRRLPLDALKVDRSFIMDIPASQRDMEIAQAIIAMAQKLHLKVVAEGVETPQQLAFLRENHCELVQGYLFSRPLPLAALEEFLRAYRFDAAPPLRSLNQA", "sequence_length": 783, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7632aa504904b61c054c4de7e5852e90e6ebddf61b17cccbc161d98a71466529", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HYT3.json", "taxon_id": "208964", "uniprot_accession": "Q9HYT3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/mhyt-pf03707.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03707", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/mhyt-pf03707.yaml" } ], "pfam_ids": [ "PF00563", "PF00990", "PF03707" ], "protein_name": "Bifunctional diguanylate cyclase/cyclic di-GMP phosphodiesterase MucR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLISSYNQVLVAFSLIVAILASYTALDMAGRVTLAKGREALSWLIGGAFAMGFGIWSMHFVGMLAFSLPIPLGYDLGLTLLSLLLAVGSSAFALWLVCQAELPWQRLALGALLMGSGIAAMHYTGMAALLMMPGIVYDPLWLGLSILIAVIASGAALWIAFRLRHGSRRIVLVRAGAALVMGCAIVGMHYTGMAAAQFPLGSFCGAAGRGIDNGWLAVLVIVITLAVIAIALIVSVLDSRLEARTSVLATSLARANRELIQLALHDNLTKLPNRMLLDDRLEQAIQQAIRDDRRFAVLFMDLDGFKAVNDAYGHHLGDLLLIEVAERIRANVRAQDTIARLGGDEFVLLIEAREPADAATLAEKLVKRISQPYQISRHEVRISASIGIALYPGDGQTRHELMINADAAMYHAKDQGRNGYCFFESSMNANAQEQLQLLHDLRQALERRQLVLHYQPKVLAPNGPMIGVEALLRWEHPQHGLITPGQFLPLAEKTGLIVQIGEWVLDEACRQMRLWLDGGHADWNIAVNLSALQFAHAGLVDSVRNALLRHSLEPSHLILEVTESTAMRDADASLVILEQLSAMGVGISIDDFGTGYSSLLYLKRLPASELKIDRGFINELAHDSDDAAIVSAIVALGRTLNLKIVAEGVETEAQQEFLTRLGCNSLQGFLLGRPMPAEQLLASVA", "sequence_length": 685, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d62ab00e79efaf87aec0eae94bda9aff5ea63cf6f60d84a6ed66d003739d64f2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9I310.json", "taxon_id": "208964", "uniprot_accession": "Q9I310", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hdod-pf08668.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hdod-pf08668.yaml" } ], "pfam_ids": [ "PF00563", "PF08668" ], "protein_name": "Cyclic di-GMP phosphodiesterase CdgJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVRCLWAAECCWLPPKRKQPFEDTMYTTYVARQPILNAKRHTLGYELLFRDGEKNAFPEYMDADRATYRLIVENFLSLGTNPRIARSRCFINFPHKSLIRRLPLTLPREQIVVEILETCQPTDDLFEAVQELSQRGYLLALDDFVYSPAWERFLPYVQIVKIDIMAMGLDKACEFVRGRLAQGSRRRFLAERVETEDEFHQARHAGFTFFQGYFFSKPEIIKQRYVSPEHVIAMQLFREVCQPEVDYVRVERLVAQDIALSYKLLRFVNTMSDRISVSISSFRQALVYLGQDKLRIFVSLAVASYISSKKPKELYNLSLQRAQFCQLMATHTHFKAHREQAFLIGMFSVLDALLDTSIEQLVEQLPLADDVKLALREREGPLGTLLDLEECFEKADWQGVEQHCLELGFDLEDVRQELIEAQRWSQDINRLI", "sequence_length": 432, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6b7cd56e69d42a0fe44a76ad20edb30bd56bc88a2e8c22693dbed3a6993631e4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9KVK6.json", "taxon_id": "243277", "uniprot_accession": "Q9KVK6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fist-c-pf10442.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10442", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fist-c-pf10442.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fist-pf08495.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08495", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fist-pf08495.yaml" } ], "pfam_ids": [ "PF00563", "PF00990", "PF08495", "PF10442" ], "protein_name": "Cyclic di-GMP phosphodiesterase CdpA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFTVSRLIPDLASANQVLETMDLPHGQSILVQIFSPLSREHVVQLARLIRSRHPQACLLGCSTEEVIFQGEVHHQVTLLQITVFEQTYLSRAVVDYSDDEAADAERLARQLELTSMSRAVVCFSWQMDTLQVARFALRDTQGAPVPVAGGAAKQTPSGRWVLLDEACYQNASVAIALHGEALYVETGGYTEWQPVGRTYRVTAVEGDRVLRLDDEPIEAIYQRNLGAQADLPHDWLISFPLMKGECRHQDLYLPLGLAEEGGLRFNRPLALQDEVRFCFDHPSLTLERVYLTAQQLQAKQCQQVWVFNCALRLNFMHENHELQPLQAVAPTDGCYCWGELLYEHGQQQVMHHSMTFLALREGAVRDDLVPIPLPSYPEGMTSPLFNLIRHAFHDLDAMTDNLAQQIRAQTSLLTASYRRDRRTGLPNRVVLRERLANFAANEHLIALKVTNFNQINEKYGYPVGDKLLRDLSEQFQVFLDQKLAGQSGLYAIGVGEWATVFRAKLDGKSIHSHFYQFVEQLEHVNFEPYGLPNVDYLSISLCAGLVSQGDFAEHSPDELLLRAIEARRYAFNNNHHFCNAARLKVQESVRQERLNWLSRVSRAVVRDDVVVYAQPICQARSHIVASYECLVRIEDEGEIILPGNFLPIITDTHLYTRLSRQMITHTFNMMRHRPEAFSINLSPQDLMSERTLQHLEAAIKSVADPARVGLEVLESEQIKDYGRMIEVCNHFRTLGATIIVDDFGSGYSNIDEIVKLEPQVIKLDGSLIRNIDQDVKQRRIAEQLVKLCQVLNAKTVAEFVHNQTVCRISEDMGVDYLQGYFLGRPSRLG", "sequence_length": 829, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1310492702e8c3da8992ceffcdffe062cd33827fad727a52e25cf681962f37ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9KVL2.json", "taxon_id": "243277", "uniprot_accession": "Q9KVL2", "uniprot_release": "2026_03" } ], "pfam_id": "PF00563", "short_name": "EAL", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 30, "discovery_scanned": true, "example_count": 30, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus ustus", "origins": [ { "cited_uniprot_accession": "A0A0C1E5J8", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/unclassified/oxepinamide-f.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-97178951c1", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/unclassified/oxepinamide-f.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668" ], "protein_name": "Nonribosomal peptide synthetase opaA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIGNDELLASHEEHSRCQFPRLVANPSEEKCLRCNLDVPIRNLLKEACAQYETSLDYVLGAIWAIILHQYIQDDYVGFAVVRRTRTGEAEAEFTDSAERSYSWRTPIHGEMAIGELIKPSTWKRSPYAPGVDLFNTSLVIEEEQQQEQTNTGHHVLKEPFQISLLVKCWPDSPVISLVFSSSYLHPTFGKALASSIEQCARGILSCHDSLVNQMNLFSPIQREIMTRWQGVPSLTSHFNFLYEIVCHNAQHHPSVVALDAWDGRWSYQELDEATSRLAARLVTHGVGPGVFVPVCFDKSCWAVVAMLAINKAGAAFVPIDPSYPAERRQMIILTVAASVILTSQQHLNLFPPSPEVMTICLSPSILSDSPASGYPRRMRFEGPAYVLFTSGSTGEPKGCEISHQAFASLVNHTEDLHLTPESRTLQFASYSFGMSVIEIFCTLVAGGTVCIPSAEQRLNDLATAIKTMEINWAILTPTVIASLYPEDLPHLRFVLVAGEISDQSAVDQWAAAGVDIRHAYGLTEWTGIFAVSHKISGQGTGQTTIGKPVDAHAWLVNTQNPAQLVPLGAPGELVIKGPGLARGYLHDPLRTKASFLSDLPWLAEWKLAHGQVYRTGDIMRYHVDGSLVYLHRKDNQIKIRGLRVELGEIESHLTRILKGAKRVAVIACKPKGSHDLHVLIALILLPHVADGQLLAIGRRSKGLPFVQLPGKTREELRDARESLRRWLPDYMIPQFLLPLVDMPTTVSGKIDRRRIRTLLNELSVKELMNHAGVQVEHRLPVTANEIVVHEVTCKSLGLDLVSMQDSFFDLAGDSVAAMKMSGLARQHGLQLTVKDIFEAPILQDMATRLTRIKELTVTAIPFALLPNVVPSQIVAEIAEQAKVDPLEITDAYPCSALQEGLCALSMRDAQSYKVRLICHIRPGTDLQVFRAAWERTYLINDVLRTRFVTSSTHGAIQAVIQRPFRWDEAESFEQYVTLIEQEPMGLGKQLVRACLLRDPRSQHQQTAFVLTLHHGICDRWSIRQLLEQIDRQVHAFPKQLELDPIEFRPFISYITETASKSAEYWENQFQDIKAVIFPELPAPDYTPVADQLTQYDIKLPTRLVREISIANYIRLAWALVLAHNTSSDDVVFGAIVSGRASPVKGIVTLTGPTIATVPIRINLSREMTVLQALTSVERQFIEMLPWEQAGLQNIRRLSPEADRACSFQSLFTVQPFLGNPPPLFSACEEGAAIAGGFASYALNIECYISEDERRMQAKVAFDPRVIALGRVRRLLEHLQVVLNEVAAQTERRLSSISPLSPSDMSLLWEWNKSVPPKPKELLHEIIQSHAQKTPKSPAVSAFDGELTFEELEWHATQLAGELLQQVPHPGMLLPMLFEKSVWVTVAMLAVLKIGSAIVLLDGSYSIERMRTICADVEAPLVVCSSQMTSTVEQIGLRPVIVAHTRAFFSKSASPVSLPPVRVHSDSPCYMIFTSGSTGMPKGLLVNHGAFAASMLGWMPKLQVDKSSRVLQFSSFAFDACFAETFTALFAGACICVPSDDQRMNDLHAAMRQHRISHAILTPSSARVVRAEQVPSLRVLALVGEPILPSDMAYWAPRVRLLNGYGPAECAPASVVQYIDGSPALDVRDIGHPVGCVAWVCDPRDSEILKPVGVAGELLIEGPNVGLGYFKDAAKTDSAFVQPRWLQSLRGMTGVRAYRSSDLVCYTEDGRLRYLGRIGNQVKLRGQRLDPTHIEHQLARCFPGATEVAVVVGCPRNASDRPTLAAFVVVDKKANGNGSTDFHDVPTKDVANRAATARARMQQVLPGYMVPTLMIPVSSLPCSAAGKLDRRALENEIASRTWKELSQYESANESSTNRTPLDTERDLQGIWAKVLDLPMEAVGLRQSFFALGGDSITAMLVVAEARGRRVGLNITVDDIFRFRTIEQIAAQAATRAATIQQLCSHDVLDVPFKLTPIQQLFFRTQGQKVRHRFNHNVLLHLTQRIPYHRLESAMKTIVTAHPMLRARFVPGTAGLDWKQNIPSNIEGTFRCKHQTNGTMARILADGQRSLNITAGPVFSADLIDTEERQTILLVAHHLVVDLVSWTVILNDLDELLCGDPISGHTSTSFQTWSRLLDEYVRGQARAARLPDAQPWDGIEGFWGISQEQMTFGSCEDTTVQIERETTDLLLGDVNKTFGTQPVEVLHAALLFAFIQAFPKRPPPATYSEAHGREPWDATTDLTRTVGWFTTLAPVLLQLDSASELSEAVGQVKDARRRLTRNGLDAFTNRQQAGVMEIVFNYGGRYSQQLQKAGALFEVQSFQTLNIFDTGLDVRRWSVVDINSFVQDGKLTFVFTHPCGPSQTRIISEWTLHLMKTLKTLATDFSSASRIYTPMDFPLLKTDKAQLERLLSSLSWISPASDIENLYPCAPIQRGILLSQEKERSHYHVTMLWEIQIAGGVSASVPKAKDAIHQVITCHPCLRTSFVRSFSERALYDQVVTHNASPQIEVVHNPSKGWQGRPSAKGSPLTPEFPNRFTIHVDQEQRVYIRLDVTHALVDAMSFSLIQRDLCLAYEGRLNISSGPPYANFIAYLQSRNEEEDRVFWEEELEGIQPCLFPSLTDYQVGEVDDALSWSVELQHSEEIYAYCRAHSVTPANIFCLAWSLVLRSYVGSDDVCFGVLASGRELPFEGAQDVVGPLINVLTFRNRLKENLSVGECLQQVHTKYLRYLQHQTYPLADISHQKGDAVLFNTALSIQRVMVSADTPTSTSLNLVHRRDPVEYAIAINVDMEPSRIAVHLRYWLSSLSSEMAMLIASSFEQAVHQIITNDQLHPAQLDLVSTDHKRLLHRWNSTLPAFDEAPIHETIQQHVRETPDALAVRWSKGSFTYRELGLLSDRLGGHLRRQGVAPGAFVPLCFDKSPWTVVALLAVIKSGAAFALCDVTHPDSRLRSICQDLQSTVILCSPDQETRCKKIAEKAIVVGEHNNSWKGDTVGPPTPELSVRAPLFVVYTSGSTGKPKGVLIEHRSFCALVHYQISVWGMSPAARVMQFASYAFDASVFEILFPLMRGTCTCILTEVERRDYLDATMKRLRVTHAFLTPSVARQLSPAAVPDLQVLVCGGEPLSHQDINQWTVNVRLVEAYGPAECTVFSACQPSLTPASCPSDIGRPVGCVVWLVDPDDTERLMPVGSLGEILIEGPIVGRGYINNSQATESSFIKPPAWLRAIRPDLDPTTRLYKTGDLARYFPDGRLDIHGRKDSQIKIRGQRIELGEVEFQVQSRFKLAVGVVVDVAPTGPNGSTALCAFICFGGRVSPSEVDSQVLRAADEDFAAEAASASAALFECLPAYMVPSYFFPLANLPVNASGKADRRYLKSLVDIPAEQLNQYRPLSNRQQRLPSTAGEQLLHNIWSTALGLDGKLIGADDSFFQVGGDSVSAMKVAAAARQQGLEISVADIFAHPRLSALAARSRSKDASDSGFDPTPFSLCPPGAKVLLPMLLRARNMLPPKSTIIDILPVSEGQGFFLTRVALHHFSFAVEGKLDIERIRHACETVYLFFAILRTIFIHWHGQILQLVLDNIEVPFHHILTDSDPAEVHRELRDLDRKVASVLDEQPPCAFILISDRSGTRHELIFRLSHTQWDGLSLAELFSAFGSAYHNRPIPPTTPLTTVVYHRLMRNKTKSLSFWRDYLRGSTISSLIPSAPETTDLSPGTTIWENTNLQPAPEPPSGITMASVVKAAWALVIAQEKGRGCRDIVFGQTVNGRSSALPNIERIFGCCLNFIPVRIRVREEMSIYDLLRHTQAQYQETVAHDDVGFQSIVDESTDWPRGTYFNSIVQHQNIPLHHVMPLEDLKTHFTLNGYFRPGREVIIFTEPDGDVLSVQFCANPNVIEFSYAQKLHRTLVDLIVHLCRCPDDLVSTLLVE", "sequence_length": 3901, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "52d68e11a511de56bb14042fab0ec4082d9bce6f5026ba0998e058ed5689c17a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0C1E5J8.json", "taxon_id": "40382", "uniprot_accession": "A0A0C1E5J8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycetohabitans rhizoxinica", "origins": [ { "cited_uniprot_accession": "A0A6G7BMN0", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/unclassified/endopyrrole-a.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-3749610d08", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/unclassified/endopyrrole-a.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF13193" ], "protein_name": "Endopyrrole NRPS A", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MDASITPVTYALSTAQTEIWLAQQLHPDSPVYNIAQYTVIEGAIKQAVFEAALRQVIDEADTLRLHFIDSDDGLRQRIGSPAWSMPVLDLTSEADPQAAAQAWMRTDYQQPVNLMQGPLFCYALLKVAPAQWIWYQRYHHIMMDGYGQYLIAQRVAHVYSARCAGTALAACDFGSIRQLLESDAQYQTSAQRKKDEAYWLKHCAHWPGPATLASRAAPALQQRLRQTTYLATQWVDDYVLDAGRLAQFLSAAWAAYLYRMTGAQDVVFGCPVTARLGADWHIPGMVSNTVPLRFRFEPNMDLLSLLRQAAKEIQSGLQYQRYPSEALQRQLGLAPGQSLFGIKVNVMPFDYELLFGGHSSTNHNLLAGPVDDLMLGVYWTLNSHQLRIDFDANPACYSAEALGVHQRRFIRFMQVLAADATQPIDSIDLLDADERYRLLVEGNATQRDYPSHLCIHQLFEAQVEQTPEAPALVYEDQTLSYAQLNARANRLAHQLIEWGVRPDTRVAICVQRSPALVVGLLAILKAGGAYVPLDPAYPGERLAHILTDAAPSMVLADAVGRAALGEAALAECTVLDPATLPALPDTNPSVAGLTARHLAYVIYTSGSTGTPKGVMVPHHAIARLVINNDFVDICTGDRVAFAANPAFDASTFEVWAPLLNGATVVVIDHDTVLMPAAFAHTLREQRISILWLTVGLFNQMAAQVDMAFSQLKALIVGGDVLDARWVAQVMRESPPEQLINGYGPTESTTFATIYKVTCVPERNASIPIGRPIANTRVYLLDAHSQPVPLGAVGELYIGGAGVARGYWNRPALTAERFVPDPFSEDADARLYKTGDLARYLPDGHLEFVGRNDEQVKIRGFRIELGEIAACLTAHPQVQDAVVLACGEGSDKRLVAYVRAEADEPLASTLRAQVAASLPEYMVPSAFVRVDAWPLTPNGKLDRRALPAPDDEARAHQAYEAPQGELETTLAAIWAELLGVKRVGRHDNFFALGGHSLLAVRLMNRVSGLGADVPLATLFAAPTLAAFAAALEAHLQQGTDALPEITPVSREGSLPLSFAQQRLWFLAQLDGASESYHTPLALHVRGPLDRAAWQQALDVLWARHEALRSTFVSVAGQPQVQLLPADTGVPLRWHDLRGVPNAQAQLARLRHEAAHAPFDLAQGPLIHACGMQLADDEHVMLLVQHHIVSDGWSLGVLARELSALYAASVGAQADALPPLSVQYPDYAAWQRQWLTGERLQAQSNYWRATLADAPVLLALPTDRPRSGQQSFAGAQVPMRMDAATTQALKRLSGEYGTTLFMTVLAAWSAVLARLSGQCDVVIGTPSANRHHPQIEPLIGFFVNTLALRVDLSDEPDTVELLARVRRTTLDAQAHQDLPFEQVVEIVQPPRRLNHTPLFQVMLAWQSNETGQWRLPGLDVTPAELDYDRVRFDLEMHLYEAGEEIIGALCYASALFDPATIERHVGYLTTMLQAMAAHPQQPVATLELLSPAERQLLLQTWNTTTAPYPAHPCLHQLFEAQVERSPDATALVYEEQTLSYAQLNARANRLAHRLIELGVEPDARVAICVERSPAMVVGLLAIVKAGGACVPLDPAYPSERLAHILNDAAPTIVLADATGRATLGEAALACRTVLEPEVLLDQAVPNPRVAELTPRHLAYVIYTSGSTGKPKGVMIEHVQITRLFEVTQSNGTLNEDQALIERQRGYSLTPADRVLQKTPFNFDISIWELFGTLLNGATLVVADADVHKEPVALMDLIARQRITTVYFVPSMLSIFLDTEGVQRCTSVKHLICSGEALPGATAQRCQTLLPDAQVHNLYGPTENALGTTFWTCPAACAENTIPIGRPIVNTRVYLLDTHGQPVPLGAVGELYIGGAGVARGYWNRPELTAERFVRDPFVDEPDARMYKTGDLARYLLDGHLEFVGRNDEQVKIRGFRIELGEIEACLTAHPQVRDAVVLATGEGSDKRLVAYVQAEADEPLASTLRAHVSARLPEYMVPSAFVRLDAWPLTPNGKLDRRALPAPDDEARAHQAYEAPQGELETTLAAIWAELLGVKRVGRHDSFFALGGHSLLAVRLMNRISGLGADVPLAALFATPTLAAFAAALEAHLQQGTDTLPEITPVSREGHLPLSFAQQRLWFLTQLDGVSETYHMPLALHVRGPLDRAAWQQALDVLWARHEALRSTFVSVEGQPQVRLLPADRGVPLRWHDLRGAPDAQAQLARLRHEAAHAPFDLACGPLMRACVVQLADDNYQCVLTQHHIVSDGWSLGVLTRELSALYAASMGVQADALPPLSVQYPDYAAWQRQWLTGERLQAQSNYWRATLADAPVLLELPTDRPRPAQQSFAGAQVPVQIDASTTQALKRLSAEHGTTLFMTVLAAWSAVLARLSGQHDVVIGTPSAHRNHPQIEPLIGFFVNTLALRMDLSGEPDTAELLARVRRTTLDAQAHQDLPFEQVVEIVQPPRRLNHTPLFQVMLAWQSNAPGEWRLPGLTTTPAELEYEVVKFDLELNLSEAGEEVVGRLGYATALFDHATIERHVGYLQTMLRAMVARPQQPVATLELLSPAERQLLLDTWNATQRDYPKHRCVHQLFEAQVERTPEAPALVYEAQTLSYAQLNAQANRLAHQLIELGVKPDIRVAICVERSPALVVGLLAILKAGGAYVPLDPAYPGERLAHILTDAAPSMVLADAVGRAALGEAALAECTVLDPATPSTWPDTNPSIAELTARHLAYVIYTSGSTGTPKGVMVPHYAIARLVINNGYVDIRTGDRVAFAANPAFDASTFEVWAPLLNGATVVVIDHDTVLMPAAFAHTLREQRISILWLTVGLFNQMAAQVDMAFSQLKALIVGGDVLDARWVAQVMRESPPEQLINGYGPTESTTFATIYKVTCVPERNASIPIGRPIANTRVYLLDAHSQPVPLGAVGELYIGGAGVARGYWNRPALTAERFVPDPFSEDADARLYKTGDLARYLPDGHLEFVGRNDEQVKIRGFRIELGEIAACLTAHPQVQDAVVLACGEGSDKRLVAYVRAEADEPLASTLRAQVAASLPEYMVPSAFVRVDAWPLTPNGKLDRRALPAPDDEARAHQAYEAPQGELETTLAAIWAELLGVKRVGRHDNFFALGGHSLLAVRLMNRVSGLGADVPLATLFAAPTLAAFAAALEAHLQQGTDALPEITPVSREGSLPLSFAQQRLWFLAQLDGASESYHTPLALHVRGPLDRAAWQQALDVLWARHEALRSTFVSVAGQPQVQLLPADTGVPLRWHDLRGVPNAQAQLARLRHEAAHAPFDLAQGPLIHACGMQLADDEHVMLLVQHHIVSDGWSLGVLARELSALYAASVGAQAAALPPLSVQYPDYAAWQRQWLTGERLQVQSDYWRATLADAPVLLALPTDRPRSAQQSFAGAQVPVRIDAATTQALKRLSAKHGTTLFMTVLAAWSAVLARLSGQCDVVIGTPSANRHHPQIEPLIGFFVNTLALRVDLSGGPDTVELLARVRRTMLDAQAHQDLPFEQVVEIVQPPRRLDYTPLFQVMLAWQSNETGQWRLPGLTATPAELEYDAVKCDLELNLSETGDEIAGSLGYATALFDQSTIERHVGYLQAMLQAMVAHPQQPVATLELLSPAERQLLLQTWNATQRAYPSHVCVHQLFEAQVERTPEAPALVYEDQTLSYAQLNARANRLAHQLIELGVKPDTRVAICVQRSAALVVGVLAILKAGGAYVPLDPSYPSERLAHILADAAPSMVLADAAGRAALGEAALAECTVLDPATPSTWPDTNPSIAELTARHLAYVIYTSGSTGTPKGVMVPHYAIARLVINNGYVDIRTDDRVAFAANPAFDASTFEVWAPLLNGATVVVIDHDTVLMPRAFAHTLREQRISILWLTVGLFNQMAAQVDTAFSQLKALIVGGDVLDARLVAQVMGESPPEQLINGYGPTESTTFATIYKVTCVPERNASIPIGRPIANTRVYLLDAHGQPVPLGAVGELYIGGAGVARGYWNRPELTAERFVRDPFSEDADARLYKTGDVARYLPDGNLEFVGRNDDQVKIRGFRIELGEIAACLTAHPQVRDAVVLACGEGSDKRLVAYVQAEADEQLASTLRAQVAASLPEYMVPSAFVRVDAWPLTPNGKLDRRALPAPDEAALAHQAYEVPQGELETTLAAIWAELLGVKQVGRHDSFFALGGHSLLAVRLIERLRRRGLSVSVRALFEAPTLSALAQSLGQRRDVAVPANAITPDTTVITPSMLPLIELTQADIDKIVKQVPQGVANIQDIYALSPLQDGLLFHHLLARDGDPYLLMVQLAFDSHERLDQYLHALQQVIDRHDILRTAFVWEGVSTPAQVVWRHAQLPVTELTLDPADEPIVAQLARRFDPRHTRLDLTQAPLLHCAIAQDRAGRWLLTQRLHHLIGDHSTLEVMHAEVRAFIEGRGDTLSPAQPFRHLVAQARLGVSQAEHEHFFTELLADVEPTLPFGLAQIQHDGSEVSESHRMLPSALNDRLRTHARRLGVSLASLCHLAWAQVLARASGQPRVVFGTVLFGRMQAGEGADSAMGLFINTLPLRVDLSGNVQAAVHATHARLAALLEHEHASLALAQRCSGVPADTPLFSALLNYRHNAMGSDERSGLPGVELLSAQERTNYPLTLSVEDFGQALELTAQSVPPLAPERVCGYMQQALHSLADALEAAPDTAVQQLQVLPEAERQLLLQTWNATQRAYPSHVCVHQLFEAQVERTPEAPALVFEDQTFSYAELNAQANRLAHQLIELGVKPDTRVAICVQRSAALVVGLLAILKAGGAYVPLDPAYPGERLAYILADAAPSMVLADAAGRAALGEAALAECTVLDPATLPALPDTNPSVAGLTARHLAYVIYTSGSTGTPKGVMVEHVQVARLFEATQPWYGFNEHDTWCLFHSFAFDFSVWELWGALRYGGKLVIVPHPIARSADAFYQLICEQGVTVLNQTPSAFKALMVSQAHSALTDQLRYVIFGGEALEPTSLQAWYATHDERYPQLINMYGITEVTVHVTYRPLRQQDSEQAGSLIGTRIPDLTIYLLDAHGQPVPLGAVGELYIGGAGVARGYWNRPALTAERFVPDPFSEDADARLYKTGDLARYLLDGHLEFVGRNDEQVKIRGFRIELGEIEACLTAHPQVRDAVVLATGEGSDKRLVAYVQAEADEPLASTLRGMFRPACPSIWCPVRLCGWTRGR", "sequence_length": 5199, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "33739cdb465538a39eb43db9a96d68ce418373c1ea450894082365b015d0db43", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A6G7BMN0.json", "taxon_id": "412963", "uniprot_accession": "A0A6G7BMN0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio neptunius", "origins": [ { "cited_uniprot_accession": "A0ABS3A787", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/piscibactin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-81da63fd62", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/piscibactin.yaml" } ], "pfam_ids": [ "PF00109", "PF00501", "PF00550", "PF00668", "PF00698", "PF00975", "PF02801", "PF08242", "PF08659", "PF13193", "PF16197", "PF22953" ], "protein_name": "Amino acid adenylation domain-containing protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MDNNHLYDNCDPIAVIGMACRFPKAPNIDAFWHNLTNGISGQSFFSIQELQAAGVNAEVCNREHFVPSGAVIDKPEYFDAALFGYSPAEATSIDPQQRLFLQNVWHALEHAGYAPTQAPSRTGVFGSIRTSTYPSFEAFDVTQVGQVKGLQALLGNDKDYLATRVAHKFNFTGPAFTVQTACSSSLVAAHLACESLRSGECDMAIAGGVAVSFPQISGYEYQPGMIFSPDGLCRPFDQQANGTFGGHGVGSVVLKRLDDAIEAGDTVLAVLRGSAINNDGQDKVGFTAPSVNGQSQVLAEALHLADVQPDEVEMIETHGTGTKLGDPIEVTAIKNAYSRSSGAPVCHLGSVKSGLGHLDTAAGIASLIKTVLSVSRKKIPMSLNIAQPNPELGLNGSSFDLATQTLDWQSPVRNAAVSSFGIGGTNCHMLVQSSSQPNQTSQPTRAEDKDIPLFLSANSPKSLGDIARRYSEHLEQHPNCADIAYSALSTRSLDLPYRLAVLNANQAKPALRAFAESGEASHQIRIGHVQSRTKLAWTFTGQGSQFEGMGETWYQTSEAFRHSIDLSQSYTKGKLEVPLTEIMFGSERKWLSRTDGAQVAIVAFELALAAYWTSKGMTPDVVLGHSVGEISACVIAGYLSHQQAIELVIERGQRMQQCTQNQHGAMLAAFAPLEQLNTISSLAELDQAAHNGAAHWVFSGDIEKVEQASKELEAADITYHQLDVPCAAHSRHLDSMLSSYANFTQHLTPTQGEITLISSVTGQAIRSLSELNADYWTRHVRETVQFQPAIEQALALDCHTFMEIGPKPHLTSIGRRESWSLKSCWLHAADENVLSELFILGIDAPWKEMLDIAGRRCELPLYAFDEQQYWVDSRQDKKPQPLITPEPVATYPLEPLTLRCAVINDFLRTCTSRKSFSLIDIIRGGRILPRHRDHIKALLDLLLSQGYYHKQGKQWVSSESGLPNADIIAQHWRSETEGHHLASVQRTCTQLLALGQSLPELMRQLEHAENLSKHLAPLLDGDSATSVSPSHDADLAWQNTLSSLTYQDWSPVAEHGDLRTAIKHQCSTFLPCGCKDVDLSVSAKIGLNNVSRVAINRLSKMWGQDIYHLRAQAPQGHWEWLARIEPQATKKDDPAELLPSPHNRYHWQARPIEADQPLNPITVEQVASAFNERGTVHRTAADQGILVLPSTPLSETSTLLAQGLSNSPDNLWILTCDAMKATPNDTTEPTATALLSLIRVARTEYPNKRFCVLDTSENDAEEVTQVLAHAPFVSASELAYRDNQYWAYQLEHAPTNDNSIPASWFNAEGSHLVTGAMGGIGRLVIRWLASCGVKRVIAIGHHQHSDWSAFCAQMAMFGCQIETHLVDLTLKGELTKLLNQLADNRPVAGAIHAAGNPHHGLIDQWDSLTAEQVIRVKAETFETLYQWLEARQAGYLIGFSSVATLGAPTQGLYAVANAFIDGFAQSHHANGHCRVMSLAWGAWDHVGMTRDAALVAKLGEEGMHTLTPAEGLWHLSQSLLMGTKHAFAMNISSNSPQFSQHFTLESSERASADCASLVVDTLATSTWLEDRIRYQLGLAENDLLEPQQDLMQLGLDSLQFLELNAAIQKQFNVKLTAEEAYQAMTIHGLEALIDSKSHHAEPQQSLPFVIQPDQRHLPFPLTPIQHAYWVGREFWVPYGGIACNVVFEWDLSHSQFDIQRLEAAWNALIQRHDMLRMSVLPTGEQVILEEVPNYTFSTQDLSRLDNNAKTQALAETRQTMSQQVRPATQWPLFDVRISSLSEHQYRLHMNLDLLQFDVQSFKIMMDDLGRAYHGEHLPPLSLSFRDYVVHEQALKNQPDWQTSWNYWLDLLPSIPKAPQLPLGNVANSYKPEFVTRKGSLPKSQWSNLKSHWQQAGITPSAGLLTLFSRILAKWSESRAFTLNMTFFNRQPFDQNVQDLIGDFTSVLLMDFDWSQDLNLKEQLSRTQEKLWTRLSHSQVNGVEVMRELAKYRKAEQQMTEQEASLPMTPVVFTSMLGMSMDGMDIEKAMTHLLGDPVYVLSQTPQVWLDHQIMEVDGELKYHWYCMNGVIAPDVLDDMFTQYGQWLCQMAEAPREFERTTLVSKSAPTPYKTTLPEITSAIESEVTNAWSYIEHKALTGLLTTLRRHQIFHQRDQLFSYSQIIQVLRTAPKHHKLVQLWLDQLVREGLLHFDNGLYQWQGHEPTAPDCELPQSEWCQRLSQYLDESLQAHPELLSDQKSALEILFKDNQITDALYRTNPSLKILNQSAANLISALGEKKGTPLKILEVGAGTAATSTAVLGQAARYIEHYRFTDVSQAFLNEAKQSLAQYNQVDFGWLDINLALEPEMRVTGGYDVIIAVNVLHDAADLPATLKQLKGALATNGHMLLIEATDQYSPMQLATVGFIEGINAFSDFRQHTGSAMLSAYDWQQVLGEQGLVTERRFPDSEQSVLRQHLFLARATQNDSPEALPCAYSPKDKNKAQEVIVESQSVPTQDALMSRIAEIWTLLLGQSVTPQTDFFLCGGDSLMATKMIVEINKQEIAHASLQQIFEHSKLEQFVQVLNGTLDQQAGNEELEISSEEHEVQQIWQALLSQDITSETDFFQCGGDSLMATKLIVQLQQAGFKAVTLQHIFEQPVFAQFCKHLFKPDAEVTVNAQKANRDYPLTPLQNAYWLGESSLFSLGQGIAHFYAELEIKDLNRARLVDGWNTMVHHHDQLRGEIREGHYCILQEVPHYEPDYVDLTQYAESDKAQYLTEAREHIAAQGIPTDRWPLFDLTIIKTNEDTHLLHLVIDLVVADGTSLNLLFQQWQQLYNDSSATLNKPSMTIAQYLEQKAERHANGSQHASRQYWIERLPTLPDAPALPLADSRAESMNQCVLTHRVSEKDWNQLQRQSLGHNVLPSMAMLATFCLVLRRWSDTHHFSLNVLHSNRPASEPDIANVVGNLSTTSMLEVDISKEPTLLALIQQVQQQMSDDLAHAEFDGQDVLTEKNRLNRNFSAGMPVVFNDTVSVGQQSSLTLGTLRDFGAQTPHVYLDAMLISSVCGGIDIKWTVQQDHLKPGVFDAMFHAYTKAVESLTTSDWHKPLCVSLSESQWGHQSNSSKASLTEQLSASKPQSLLEMIKQGYEAYPERIAIQQGETLLTYREIWNAALGLASSIAANDDDAPLVAIVMNKSWQQVVAAIGILMAGKAYLPIDAAYPEARIHTLLEQGQVTTVVAEKGLKVALDTYRVLTPSVSHTQHNEFQPKMVGPSDLAYVIFTSGSTGQPKGVMMDHQAVVNTLLDVESRLSLDCEDRVLAISSLNFDLSVFDVFSTLHCGACLVIPESSPAKDPDALIELAIKAQITIWNSVPAFAQLLADGLTSRSSVLPSLRHIMMSGDWIPVSLPEQLKVIAPNTKLLSLGGATEAAIWSIAYPIEGSHAERKSIPYGKALTNQAFFVLDSQLQPCPNWVSGELYIGGSGLSLGYWQDESKTQAAFITHPESGQRLYKTGDLGRYQDDGNIEFLGRNDHQVKINGYRIELGEVESTLRLCPNAGLKERLQNIIVQPIAIEGVGTRLVAYTVCTQPEPQDATHLLDHARNNLPTYMCPVQIVSLDTIPLTSNGKVDRKALPTPVVEINANSRPPMTETEEQIAQIWRDCLQQAAIPANQSFFDFGGNSLAAVRVISRINSQLGSQLTAGHLQSHDTIERLASLIDRRTTYESSEPVLLNPTKEAKPPLFIVHPIGGHLLSYQPLAQQLDHVSLYGLAYPDTGFKQNEFDVTQLAQHYLNQIKRIQPHGPYRLAGWSFGGIVAYEMAHQLVESKQKVDACILIDSYRPILQKETMSAQEVRRHFYADVIGRFPQLMQVEEPDLSTDDSLCGHLSSAFGHIAAIEDVTKDSVQHLLDVYRRNLAAMLSYTVPELTSVNTALIAAGRNNHLDFMSYQDPIIAQSPHHGWGDVCDLTVHELDGDHYTLLQEPNVSELANTLVSLLDRTLKRAQGSQSSTMEILENE", "sequence_length": 3992, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a1008e48199717b210046f7f578c3034ee81ff2363ef2b12c75d327c833213cb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0ABS3A787.json", "taxon_id": "170651", "uniprot_accession": "A0ABS3A787", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio neptunius", "origins": [ { "cited_uniprot_accession": "A0ABS3A8C5", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/piscibactin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-81da63fd62", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/piscibactin.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF08242" ], "protein_name": "Amino acid adenylation domain-containing protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MSNNTDLITQFEQALCDTYALSHAALNDEENMFSLGVDSMFLMRMVSQFRRAGCKVSLKQLYASPTLGDVRDLLRLHASGKQHQQAQSEVSPARLPSMLDGQPFPMTPVQHAYYVGRDPNQPLGGNGCHLYQEFNGRQLDTVLLERALNTLVKRHPMLSVAFQSDGMQRWQAPTSPIKVICHDLTDMPAEQADSALLDLRAKLSHRPLDVQNGQTIEFHCSLLPQDQFRVHVSIDLLVMDAASFSLFFNELSQLLQGMPLSPRSKHYDFCSYLAQEKAELATVRQAAKQFWSEQIDSLPTAPKFPLTNEPHQIGKPQFHRRRHTLNHEQWAIFQKHASAHQVTPTMVLATAYAAVLSRWSGQTDLLLNLTLFDCYPFNEDVQHLLADFTNILLLDMRLEEKSIVELAQTHQQRFAEVYEHRHHSGVEVLRELKKKGTHPHGAPIVFTSNLNHSLFGDDDSSPLGEPGWGISQTPQVWLDFVAFKHKDGIMLQWDSVDALLPSGFMDSLFAAFVQVVEHLVAKNTNWSEPFPDLLPQQQKRQRQARTPLPTQLPDGLLHQRIFDVASRHPNAIAVVHDGETISFEALTFRAQCLANLLIKAGLEKDERVAISMEKGPGQIIAALAILYAGGIYVPIAPDQPLSRRQTILDSANIRFVLRCQNTLSRYDWTDADHIEWQTAIESPLLSPPHQCTPDDTAYIIYTSGSTGIPKGVVISHQSALNTCIDINQRHQISTKDRVLALSALHFDLSVYDIFGVLSAGGALVVPLETQRRDPMAWAALVDKYHVTLWNTVPALFDMFLTYCEGMGLTTPSHLRTVMLSGDWIDLSLPERYRKFRPQGTFSAMGGATEAAIWSNEFLVDKVDPMWRSIPYGYPLSNQAYRVVDSAGRDCPDWVVGELWIGGVGVAQGYWNDPERTEAQFIETHDSVSGERQRWYRTGDMGCYWPDGTLEFLGRQDTQVKVGGYRIELGDIDAALNRIDGVRHGVSLALSPCGGKDRQLEVFVVAEGNQLCASSTPDNSLPKSYSDLFPASSRPANQLGANEVAHFLLYHLCTSIPASEASRSFESWCHAYGVAEGYQPLFKQWWTLLCQQGLATQSETHYQLHNPTGQCPNWFETPSEFTHNSELLKAIITGSKPAPALLDSILSPEALMTQSPAFQAQIGALAQGISNLSSQLGRPVVLTEYEARSGRVAHALLELCGPDTLHYHAMDTSLSLVQSAQSRLARFSHASVHHWDNKDNQELFGQSDIVLLNNVLHRLKEPQAGLTNAQKLLTPQGLMLVLETSALGEGALISALVMDPALSTLPTQRELLTWFQDAALRLEHKLDQWPLMGYALRNLSQVLVPDSEILKAKLAELLPQYMLPKRVHFLTSLPLSPNGKVDRKRLAQNNTSMDEAQPLESPLQTENERVLAQVWQSLFPKQTFDRHSDFFLLGGDSLMATRCIGALQKLGYIADLTDLFTHTRLESFAAKLTHAEAQKQPAQLIPNPEDRYRPFPMNEVQEAYWIGRQSGFALGNTSAQFFVEFRVSEFDAPRFNQAFNQLINRHDALRTVVRNHQQQVLSDVPAFSIQCHTFADIDCHEADLIRTELSHRVNDPALWPLFTVEALVSPEHSDARLCIGLDNMMLDGLSMQIFFSELEALYLNPSIQLPAIELTFRDVLQWQSNHRSPQAEEHAKTYWQQQLTNLPPAATLPLQADPATLSRPKFIRAAGTLSPHEWQALKTQASQHQVTPSVILMGAYAATLAAWGRQSSLTLNLTLFDRPDVHPQINQVMGDFTTLLLLAWHQEANWLSSIKRLQQQLAQDLKHSNVSAVWVMRELARQQHLSSASMPVVFTSALGTSDSDFLSDKGWLKPVWGISQTPQVWLDHQVYESEGMLCLNWDAVEALLPQPLLDQMFGHYVALLETLANQPQSWSQSLATLLPEHSEPVTSPIPHATGQPLVSQSKSNRGKPENVQRIQAAFGQIVSTPIGENDNFFDAGASSLQLVQLHGLLTQQGDTISVTDLFTYPSPALLAGAYEVSTKGSEPHSARTQRQQRQTQRKLTRRQRVN", "sequence_length": 2049, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "897810def67b2195be4f530949038498a083c39c9c79c13e787c2ea12a1e475b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0ABS3A8C5.json", "taxon_id": "170651", "uniprot_accession": "A0ABS3A8C5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181)", "origins": [ { "cited_uniprot_accession": "A1DN09", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/unclassified/acetylaszonalenin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-fd260f24d4", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/unclassified/acetylaszonalenin.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF13193" ], "protein_name": "Nonribosomal peptide synthetase anaPS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTITTMTPQNGTRRQVDGGPICFFPTMTRLDMQSITFDNHVVQKLTSFPNASDAGVHLLLAGLWALTLRQYAEVDTARFEVSTSILASGKGSGATKHVFSIALSPSDPVSTLFDVRNWDIRFVDQKHSDSFNTGVFVVENQNGRCLLDVEYHDINLLLQSNRTSAELSLVYRSSAIAGTYARHLADGIAQAIISISENPNQSIGAVDFCCSLQKAQVVTWQNAKIIQPDRSFLFEYISRNATVHGDTLAIDSWDGQFTYAELDGLSTVMATRFQERGIGPGDLVPMCFGKTRWAIAAMLAINKTGAGFVPLDPAYPQSRLETIIQKTQARVALASPTTESILRPLGLPLLVISDSILGCCLPHSKRYTAPNSGVAPAYCFFTSGSTGDPKGCEVSHLAFASIATHARSLCLSQQSRSLQFASFCFGASLLEIWCTLIVGGTLCIPSDHDRLNSLGEFMAKMRINWAFITPTVLASISPDNFNNLHLFIAGEPIGERDIRTWAPRARLFQAYGLTEWAGVFAVSRQIRTPEDRKSIGSPVNARAWIVDPLDHQKLAPIGAVGELVIEGPSLAQGYRGDPQRTAAVFLQRPPWLTLPALSKDGSSSRVYKTGDLVRYAEDGSLVYVRRKDNQVKIHGQRLEIGEVEYHVRQLFPQAKMVIVMVHEPSDAASHQRNLVALTLHPPNNGHTGFSHGKLEFMEVDQEYQSKVEHVRNGLRSRLPAFMIPQLFLPLSQIPTTITGKADRRSLCRDVNKLSYAQLHGLTTQMVSTRAAQGKGEEAIHAAVCDVLGLAPEHLGMNDNFFHLGGNSASAMKLTMSARRRGLRFTIRDVFNHPVLAELASAANLSNGCERPVVQTMELLEPESVSELKQLAVSQCRIDEDIIEDIYPSTALQEGLVAITARDPSLCKARVICKLRSNVRIDALKAAWECVVQLNDILRTRFILSASHGTFQVVCKEPFSWARAQNLEDCIQQSDALVHRVGDDLVHAYIIPDEKDRDSASTFVFVAHHALCDQWSIRLLLDQLTAAYGHSKLPSNRFSAFIRYLTKTRSHFKNYWINQFQGLEAVAFPPLPSPSYTPVASEKFDFVMKLLGNTTKQITTATYIKLAWAVVISCNTGSNDTVFGVTVNGRGAPIDGVGELTGPTIATIPQRIKLLPDQSATSALAEIQSHSLEVIPYEQAGLQNIQKYSPEARSACMFQSQLIIQPCPPSPPDLFEACDFSATQTGGFSAYGLSLECQMTYDDRHCEVTATFDPGMISRERVQRLLQHLELVLQDVMADPSRKVGDLPRMSRQDWDQIQRWSGTLPPVSRQCVHDAVDERYLEYPNACAVSAPDGDLSYAELIHSANAVAAELLAHGVEPGKYIPVLFEKCKWSPVAMLGVLKAGAAFVLLDPSYPPQRLHAICGGLKSQIILCSKGLSARAASLGPTAIAVHENATFLVDIPNATLPVVSPEDPAYVVFTSGSTGTPKGAIIDHQSYCSSALAHNRAHFLGRNSRVLQYASYAFDVSIMETLSTLMAGGCVCILSDLERHDHFADSVQRLAVTHAFLTPSTARLLMQRELPSLCVLVMGGEVMSLADRSYWMKRVRLMNEYGIAECSVASTIREVSDVEQRDIGFPMGVLAWVVDQNDHEKLVAIGAIGELLLEGPSVGRGYLDNPEATRRAFIEQPGWLRAVRGGKTSRVYKTGDLVQYNEDGSLSFIGRKDSQIKIRGQRFELEEVEQHLRRIDEIKEVTAVAVAPSDRQKQAYLVAFIVPRTRESFCVHSAKALVTHPTEEFRHLAAAIQSKLHSILPAHMVPSIYLPVNQMPKTSSDKVDRCRLKEEVGKWSWSDLQAYSVSSTSRRAPSNSVEQDLQRVWAQILGIRLDSIGVEDSFFHLGGDSIIAMQVVAEARSRGLDHSVQDINQLKSIKAIANKIGVVSTIAQPVVQDQVTDELFGLTPIQEFFFEKYPEGTCRFNQNILVHFQKPVADIDVERAANKLVQNHAILRARYARQKDGSWKQFFTGYTEQCFRFSMHKVNSVQEMRHIIGQSQTSLDPEHGPVFTVDLFDHNGQQSLFMIGHHLVLDLVSWRIILADMEAMILDPQHQPHLTMSFQTWARLQAEYGTRHLEPPPVQQLCSIDEPSMRKFWGAENNANTGGDSKTRLIRVNEQLTNKLFGPSSQALDVEPVELLHAAILFSFVNTFPQRPAPCIFGEAHGRETWDSSIDVTRTIGWFTTLWPVVAQVNPSDSLETVVRTVRQARRAMDMHGWKHFTSIYHNTQQTKCSAGTHLMEITFNYAGKFQQVEQDGALFRMEPMAKQNLFDGAAELGRWAMLEINSVILNGMLEFHVTYNRGTDEASVLTPWMDNLVKCLEDLASGFA", "sequence_length": 2359, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "726fcb5c82cfb36457d6a979c8651c88dbd8bc4e7efb7dd0195214a330a46df7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1DN09.json", "taxon_id": "331117", "uniprot_accession": "A1DN09", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Penicillium chrysogenum", "origins": [ { "cited_uniprot_accession": "A6N339", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/n-5s-5-ammonio-5-carboxylatopentanoyl-l-cysteinyl-d-valinate.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:58572", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/n-5s-5-ammonio-5-carboxylatopentanoyl-l-cysteinyl-d-valinate.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF00975", "PF13193" ], "protein_name": "N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MTQLKPPNGTTPIGFSATTSLNASGSSSVKNGTIKPSNGIFKPSTRDTMDPCSGNAADGSIRVRFRGGIERWKECVNQVPERCDLSGLTTDSTRYQLASTGFGDASAAYQERLMTVPVDVHAALQELCLERRVSVGSVINFSVHQMLKGFGNGTHTITASLHREQNLQNSSPSWVVSPTIVTHENRDGWSVAQAVESIEAARGSEKESVTAIDSASSLVKMGLFDLLVSFVDADDARIPCFDFPLAVIVRECDANLSLTLRFSDCLFNEETICNFTDALNILLAEAVIGRVTPVADIELLSAEQKQQLEEWNNTDGEYPSSKRLHHLIEEVVERHEDKIAVVCDERELTYGELNAQGNSLARYLRSIGILPEQLVALFLDKSEKLIVTILGVWKSGAAYVPIDPTYPDERVRFVLDDTKARAIIASNQHVERLQREVIGDRNLCIIRLEPLLASLAQDSSKFPAHNLDDLPLTSQQLAYVTYTSGTTGFPKGIFKQHTNVVNSITDLSARYGVAGQHHEAILLFSACVFEPFVRQTLMALVNGHLLAVINDVEKYDADTLLPFIRRHSITYLNGTASVLQEYDFSDCPSLNRIILVGENLTEARYLALRQRFKNRILNEYGFTESAFVTALKIFDPESTRKDTSLGRPVRNVKCYILNPSLKRVPIGATGELHIGGLGISKGYLNRPELTPHRFIPNPFQTDCEKQLGINSLMYKTGDLARWLPNGEVEYLGRADFQIKLRGIRIEPGEIETMLAMYPRVRTSLVVSKKLRNGPEETTNEHLVGYYVCDSASVSEADLLSFLEKKLPRYMIPTRLVQLSQIPVNVNGKADLRALPAVDISNSTEVRSDLRGDTEIALGEIWADVLGARQRSVSRNDNFFRLGGHSITCIQLIARIRQRQRLSVSISVEDVFATRTLERMADLLQNKQQEKCDKPHEAPTELLEENAATDNIYLANSLQQGFVYHYLKSMEQSDAYVMQSVLRYNTTLSPDLFQRAWKHAQQSFPALRLRFSWEKEVFQLLDQDPPLDWRFLYFTDVAAGAVEDRKLEDLRRQDLTERFKLDVGRLFRVYLIKHSENRFTCLFSCHHAILDGWSLPLLFEKVHETYLQLLHGDNLTSSMDDPYTRTQRYLHAHREDHLDFWAGVVQKINERCDMNALLNERSRYKVQLADYDQVQEQRQLTIALSGDAWLADLRQTCSAQGITLHSILQFVWHAVLHAYGGGTHTITGTTISGRNLPILGIERAVGPYINTLPLVLDHSTFKDKTIMEAIEDVQAKVNVMNSRGNVELGRLHKTDLKHGLFDSLFVLENYPNLDKSRTLEHQTELGYSIEGGTEKLNYPLAVIAREVETTGGFTVSICYASELFEEVMISELLHMVQDTLMQVARGLNEPVGSLEYLSSIQLEQLAAWNATEAEFPDTTLHEMFENEASQKPDKIAVVYEETSLTYRELNERANRMAHQLRSDVSPNPNEVIALVMDKSEHMIVNILAVWKSGGAYVPIDPGYPNDRIQYILEDTQALAVIADSCYLPRIKGMAASGTLLYPSVLPANPDSKWSVSNPSPLSRSTDLAYIIYTSGTTGRPKGVTVEHHGVVNLQVSLSKVFGLRDTDDEVILSFSNYVFDHFVEQMTDAILNGQTLLVLNDGMRGDKERLYRYIEKNRVTYLSGTPSVVSMYEFSRFKDHLRRVDCVGEAFSEPVFDKIRETFHGLVINGYGPTEVSITTHKRLYPFPERRMDKSIGQQVHNSTSYVLNEDMKRTPIGAVGELYLGGEGVVRGYHNRADVTAERFIPNPFQSEEDKREGRNSRLYKTGDLVRWIPGSSGEVEYLGRNDFQVKIRGLRIEVGEIEAILSSYHGIKQSVVIAKDCREGAQKFLVGYYVADAALPSAAIRRFMQSRLPGYMVPSRLILVSKFPVTPSGKLDTKALPPAEEESEIDVVPPRSEIERSLCDIWAELLEMHPEEIGIYSDFFSLGGDSLKSTKLSFMIHESFNRAVSVSALFCHRTVEAQTHLILNDAADVHEITPIDCNDTQMIPVSRAQERLLFIHEFENGSNAYNIDAAFELPGSVDASLLEQALRGNLARHEALRTLLVKDHATGIYLQKVLSPDEAQGMFSVNVDTAKQVERLDQEIASLSQHVFRLDDELPWEARILKLESGGLYLILAFHHTCFDAWSLKVFEQELRALYAALQKTKSAANLPALKAQYKEYALYHRRQLSGDRMRNLSDFWLRKLIGLEPLQLITDRPRPVQFKYDGDDLSIELSKKETENLRGVAKRCKSSLYVVLVSVYCVMLASYANQSDVSVGIPVSHRTHPQFQSVIGFFVNLVVLRVDISQSAICGLIRRVMKELVDAQLHQDMPFQEVTKLLQVDNDPSRHPLVQNVFNFESRANGEHDARSEDEGSLAFNQYRPVQPVDSVAKFDLNATVTELESGLRVNFNYATSLFNKSTIQGFLHTYEYLLRQLSELSAEGINEDTQLSLVRPTENGDLHLPLAQSPLATTAEEQKVASLNQAFEREAFLAAEKIAVVQGDRALSYADLNGQANQLARYIQSVSCIGADDGIALMLEKSIDTIICILAIWKAGAAYVPLDPTYPPGRVQLILEEIKAKAVLVHSSHASKCERHGAKVIAVDSPAIETAVSQQSAADLPTIASLGNLAYIIFTSGTSGKPKGVLVEQKAVLLLRDALRERYFGRDCTKHHGVLFLSNYVFDFSVEQLVLSVLSGHKLIVPPAEFVADDEFYRMASTHGLSYLSGTPSLLQKIDLARLDHLQVVTAAGEELHATQYEKMRRRFNGPIYNAYGVTETTVYNIIAEFTTNSIFENALREVLPGTRAYVLNAALQPVPFDAVGELYLAGDTVTRGYLNQPLLTDQRFIPNPFCKEEDIAMGRFARLYKTGDLVRSRFNRQQQPQLEYLGRGDLQIKMRGYRIEISEVQNVLTSSPGVREGAVVAKYENNDTYSRTAHSLVGYYTTDNETVSEADILTFMKARLPTYMVPSHLCCLEGALPVTINGKLDVRRLPEIINDSAQSSYSPPRNIIEAKMCRLWESALGMERCGIDDDLFKLGGDSITSLHLVAQIHNQVGCKITVRDIFEHRTARALHDHVFMKDSDRSNVTQFRTEQGPVIGEAPLLPIQDWFLSKALQHPMYWNHTFYVRTPELDVDSLSAAVRDLQQYHDVFRMRLKREEVGFVQSFAEDFSPAQLRVLNVKDVDGSAAVNEILDGWQSGFNLENGPIGSIGYLHGYEDRSARVWFSVHHMAIDTVSWQILVRDLQTLYRNGSLGSKGSSFRQWAEAIQNYKASDSERNHWNKLVMETASSISALPTSTGSRVRLSRSLSPEKTASLIQGGIDRQDVSVYDSLLTSVGLALQHIAPTGPSMVTIEGHGREEVDQTLDVSRTMGWFTTMYPFEIPRLSTENIVQGVVAVSERFRQVPARGVGYGTLYGYTQHPLPQVTVNYLGQLARKQSKPKEWVLAVGDNEFEYGLMTSPEDKDRSSSAVDVTAVCIDGTMIIDVDSAWSLEESEQFISSIEEGLNKILDGRASQQTSRFPDVPQPAETYTPYFEYLEPPRQGPTLFLLPPGEGGAESYFNNIVKRLRQTNMVVFNNYYLHSKRLRTFEELAEMYLDQVRGIQPHGPYHFIGWSFGGILAMEMSRRLVASDEKIGFLGIIDTYFNVRGATRTIGLGDTEILDPIHHIYNPDPANFQRLPSATDRIVLFKAMRPNNKYESENQRRLYEYYDALDSTDWTACYQAIPTSSWSRLRTIHTFPGSEIHNRWSRCVRLSRNTSLAIDPSLAAQYIGRWK", "sequence_length": 3791, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "061981fc05efb061a31fc65c6f975889cafb227614e04b5f66abc7e3c17f8837", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6N339.json", "taxon_id": "5076", "uniprot_accession": "A6N339", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10)", "origins": [ { "cited_uniprot_accession": "B0XWK8", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/hexadehydroastechrome.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:73878", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/hexadehydroastechrome.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668" ], "protein_name": "Nonribosomal peptide synthetase hasD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIKSAYAWQCSVDIPYEPTYYPPGPRGRPGAASGTISLSLKAPALSGVRLHPRNGFFEVVRLEHTCWKAAPMNLTLTTTSITIQPSATMANRAPTLLDHFHDQLQKHSSSVAIEDGTQSADQGAWERVTYAQLDALSDSWSKRLRQAGVGAGCIVPLLSKRSVAMVAATLAILKLRAAYVPIDIDSWGKDRIDTVLKTVNPQIIVSTSPCPKDHYPYPVVALERNDFDETVTSNGTQWTRNDEDSIDRGNDLAYIIFTSGTTGIPKGVKIGQRSISRYVKEGGDLPFNFNTTHGTRVLLICSIAFDVCAGVMFNTLCNGGTLVLADPSTFETAAKTCHVLPLTPSILVTLDPKAGFDTVEKIFLGGESPSPSLIEAWSSPRRRLYNAYGPTETTCTAFMGELLPGSPITIGYPISYSTVTLLDEDGMESVEGEICIAGLGLALGYFHDPERTNSAFVEWNGVRIYKTGDYGRRTKHGLQFCGRRDSVVKNRGFLINLEADVEPALLSYDKVDSASAFMSQGQLIAFVTPTSAKEGLREYLANTVSSFLVPDTIYSLDEFPRTSNGKVDRRSLMRMHELEQGSDTASLERGLGAVESVRRGLSHVLRLPESQILPASSFRHLGGHSLAAVMLVSVLRRMGFGISVAEVLLLDTVENIAAAVVELSDIPHALSAQEDLIERLRHDISTTRPLDEGVTIAPMTDMQTRLLGASVATPGLSFIKTSFTLDHPEKEDLTSTLRAAWVRLHQTHEILRTAFVLTASNGAQIISQEPDFSWKEKFVTESEWESVCRREEHLDVADFPDFDAENRASLSRVVLIIAPRRRTRFVWTVHHSLIDGWSMATLMRDFASCLDGKPIPAPPQFAQVAQAIGQLKAESSDRAVSFWKEYLDGYTPAQRLRVSPPSDVSDYTQAALSRKLTVSVSALEDAARDRFAVTPATLLYAAWGLLLSRYSGTDRAALGAVLSGRSLPIPGVENIIGPLINTLPLAINTQEAQSTYSFVQSVFRRLCDILEFQWSPVALIQEGCGCNPSELFETLFALQYDFPQTPWKSSEVPEPRDIRYEEATQVPLTVLLDNANGQFEVRFIYRRSHFGDATVQRMIGQFGNLLENLIAAQPDTDLSNVTGQMFNNRVYEMSIAKPGQPVSACKVPESLTEAIENSIQAHPDIYAVEGLTGRLTYREFGRMTEHISQRLLQHIQPGSVACMISDGSLLWLLAMVAIIRAGAIYCPVDEKLPRDRKDYMVRNSRAALILYANSSQEPLCNGVPSLNMESIMQEISSSSGSPIATSRNRPSGDTVACLVYTSGSTGLPKAVQLQHKGILNVISQPEGRLYSRPGQRNAQMLSLGFDCCIKEVFSTICFGATLVLKDPENPISHLARVDATMATPSLLATLEPTDYPNLKVITVAGEAVSQVLNDKWAAGRTLINGYGPAECTLISTTAILHPGNRVSIGKPLPGLSCYLLDSNKRPVPMGVSGEIYISGVQVTPGYLHNEQETSKRFLSDSFNPGQVMYRTGDIGRMLEDGNIEYIGREDNQIKLRGFRIDLGEVQSTISKLASTASNVALIVSNGNLVAFMTPETIDVRSLAKSLETQLPQYAVPNRIIALATLPTSANNKVDSSALQRYLRDHGKDGAVVEDLETDTQRVLAVIWADMLGRDLNQTPISPSDRFFELGGHSLLQIKVAQAISKRWNIRPLPLKQVIRHHSLQDLSLAIDELVSDPRTVSTMPFLEMTPVARNGQLPLSYLEKEMLLNHLISGGSPAGNMNFVCKIRGDINAETLADAFQRVTADVEVFRTRYSVIEGTLFRQQAPGSVKVPRVVQTGNLSSFVHGRITKSFDLSTEPPVDVSIIIGTPMQAMLVVVMSHVVGDAATMATYLNRVSRTYDLLRSNSQTTNTSTVPDNLTYIDWAHWASTLQPNPRALTFWSSYLSNPPSPLTFGNPSPAPATYIGLTRSWTLPPSMYRKLSDLAAKASVTMHQLILAAVFFSLQCVDRRDDILVAAPFTHRTEPGTESLPGLFLDRLLLRIQRSPHQSSIFDFLSSVRETSQQALAHVIPFHTLRHSLAHKPSLIDPLFKVMVTYHTAADQRPLLDLSGAEVQPIPWRHTGGSKFPLKFEFTEMATQDLEVDMEYDLGCIREDIALRLEFALSFALQLMVLERETDDIIQLVQMSFCPGEGSPVGLTPSHEGSAELTNGTNKTDSTTGQQELENNLTDVVCECLGLEIQDVDADKSFWDLGAQSMDALKLQHLCEKRGVRVRLRDIFVSRSLLELATCAVII", "sequence_length": 2273, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "900921a6df6bb5f9e08f5a86bf816de5ca68212577d80ee0546ab58cecd6233c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B0XWK8.json", "taxon_id": "451804", "uniprot_accession": "B0XWK8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus oryzae", "origins": [ { "cited_uniprot_accession": "B6F209", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/unclassified/6ar-11as-11br-10-acetyl-11-hydroxy-7-7-dimethyl-2-6-6a-7-11a-11b-hexahydro-9h-py.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:22450", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/unclassified/6ar-11as-11br-10-acetyl-11-hydroxy-7-7-dimethyl-2-6-6a-7-11a-11b-hexahydro-9h-py.yaml" } ], "pfam_ids": [ "PF00109", "PF00501", "PF00550", "PF00668", "PF00698", "PF02801", "PF07993", "PF08659", "PF14765", "PF16197", "PF21089" ], "protein_name": "Cyclo-acetoacetyl-L-tryptophan synthase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTPIAVVGTACRFPGDISSPSQLWELLSNPKDVLRDLNPKRLNLTGFNHHNAEHHGATNVPNKSYILDDDVYRFDAAFFNISAAEAEAMDPQQRLLLETTYEALESAGYTLKQMRGSSTSVFIGAMTSDYHDIQARDLDTISRWHATGTSPSILSNRISYFFDLKGPSMTVNTACSSSLVALHQAVQSLRNGDCTAAIVGGVNLLLDPEVYISHSNLHMLSPTSRCRMWDRDADGYARGEGCTSIMIKTLDQALKDGDDVECIIRETAVNSDGRSAGITMPSPEAQATLIRETYERSGLDPVRDRCQYFECHGTGTQAGDPVEAQAIQQTFYPKNAVFSPDDKLYVGSIKTLIGHLEGCAGLAGVMKAIMCLKNRTITPNMFFDNLNPNISPFYDHLRIPTNTVPWPPVAHGCPLRASVNSFGFGGTNAHAIIESYVPSQPKRQASYCKESNRQKYTNSGPFVFSAHTQESLYSNIERTARYVRSNEALDLGHLAWTLAKRTVLPFKVAITALSREELLGNIDKAIVEYKASKASAQGPSPWKHPPEPHRIMGIFTGQGAQWAGMGRELLLASTVFRKSIERCEHALATLHDGPSWSLQEELLADKPSSRLSNPAISQPVTTAIEIAAYDLLCTSGVNVDVVVGHSSGEIVAAYALSIISAEDAMKIAYYRGLHTKPARSGRMLAVSLSFHDARELCSWPSFSGRVVVAASNGPASTTLSGDYDAILEVKALLDRKKTFARTLQVDVAYHSHHMVPCSAAYLESLRACNIQVKSPRSGCTWISSVTGRNAILDGDIQSFSATYWVDNMVKPVLFSQALDKSLCGTQDLGVCIEFGPHPALRGPVLDTLKSKGTSSVHYTSLLRRGQNDLNAASSAVGYLWERMADRVDLASFLQGFRSQALQLIKGLPGYSWDHGRRYWRESRISRRYRLEGTQLHPLLGRRSADEFPNEFCWKNMLHLKEMPWAQGYKEEGRVVLSAAFYLCSLLSAASSAAVCQRLVVLELNNFVVMEPITLEEYGNGVEYITTIRFDNEDFRTISSTILHAEASCHACKSDESVLTKVCTARLTLHLGDARGPDCDCLPPRGQRNDLLAPVDVADLYDSFEQAGMSYTGPFRSITSIQRSLGEATASVAWAVDTTMPESVLNPAMVEASFQAIMCAFASPLTEELRTPFHAKEIRRVLVTPRLALGGVSCDIDAFVTGVDCGGVEGDVSLYKPDGNAMIQIEGLVMKSVPQPDTSSDRNLFSHVVWESDPFGYSLISYPTPNEDMGWKRAADIVALYHLRRTVEEIDPLESAGFTPHHQLLYREISHIAAAGRGSEYYITHPDCAQTSEEIILAMIDKYAGIVDLQSLHSFGKALPAILRGELDLHNTPNEPDTLEGFTHDAAMFSQLSKDICSIVRRIVHKHPHMNVLGLDPGPSVITHQILEALDDKHTSYCLGSADPVILNKTLARLSAQHRNLYSKVIDLTTVNAGEHGSDKYDMVIAANPLHGTDTSANLFEVCRAMLKPGGYLVFVRVTGRVSMSLLCTCGWLPQWWQGYDQDARSWTDMSTVRYDSHLRSKGFSGIDHIFHDSMNSNGDGLSVMVTQAVNDTVMMLREPMNSTGLAPLTETVVFVGGKTLSVARLLQSIRRIVAASGTATTVVEDIDRLEMNGLTKQHSIISLVELDEPFFSRGAFHERLLAFKELVARSKHVLWLTTRNMTSISVAIGRAMRSERGADISLQFLGLSTVANISPSAVVEVFLRLTWSFVPVLTDGEVLWTNEPELQWDGSTLRIPRLVWDHKRNKRYNYRHRQGRPEAGLPQTAVPLSPRVSTNSVAVQIKYSCLVCTDVYLWVGARIDGQGNVVGISDHVSFVIHARLDHVHNLSDEHDLSPDALRATASFTLAYLLIKSLSGPILLYEPDELLAAAVEQDREPEQTVYFVTSKYNDCSRGWITVHPHASRRMVERMLPRKVSAFVDLSSSDDHVVTTLRDIYSHARIQAVELYRRAFAASPGQLIADSYTQACTSLSILSHTALEVTSSTEASTNIASVAYPKVVNWTSPAPIASPGDMISATTMFSSSGTYFMIDMATPLGLSILKWMATNGARKFVLAGRNPRMHEAWLEEMSRLGATVKPLKMDVSNKESILSAFTQIKEALPPIVGVCYAPLALSDQGFEYTVEDAGGLAATAMINAAKYLDELFPTPTLDFFVILTSLVSVIGTPKQVAYHAPSLFMTDLIQRRRLRGLVGSVMALGMVVDAGYFSRQGKEVIQRMMHHGYAPLSESDLHHAFGEVVAAGVPEAEGNAEIFFGLQLIDSQIDQSRESTSVSNHLLSHFITSRSGTKEGQYAEQEDSPSLLVPDEQLQESGPGRNKYDDLLARLSGKVRSILRLGDQALDVHTPLLDLGCDSLLAVDIQAWVAKEFDIDITPMDALLDTVAGLCEKAVPKPNAPGFVVEKEEQLVKELDFIDVATTASRSEHSSSVQDIPLDSTSSESSCVLCPSDSGFEQVRNDLEPRFTRIEKMSPHQSQIWFAGHWMRDPTQYNVVISYNVEGRFPVDRFKEALEHAVSMHESLRTAFFSDPNNGDLLQGVLKVPPPFLEHVRTPSAASVSQEFDKLASYQWRLEDGEVMRVTVVSIGKDQHTVIFGYHHIVMDGASWSTFLHDLKCIYEQRPRREVAQYVDYSLMLNRDIHNGTFAKELEFWKSELLPPPEMMPVLPLAKEKTRIPTDNFKVHTSTRHISIEATERIKQASRSLRGTPFHFYLATLQVFLAGLLKIESLCIGMSDANRKHQQFTGTVGYFLNMLPLRFEVQQTDSFANVFQKTSSKVLTALLNSSIPSNLVVDALNIPRVSNVTPLFQVAINYRVGEITRMSVDDFALNYDRSVMGNAPYDISFHVTPCANGTSIVEVNCRDYLYSPKATERIIDEYVRLLEIMSSNPLISVQSSVATSAPINEDGLSVQRGPRISHGWPATLPERFQDMVDQYGDRIAITDQGRDFSYLQLQAQSTRIGEALLQKGVRSGDTVAVLCPPSMNSVASMLAILRISAVYVPLDLSLPAARHKAMILASPVRALVCVSSTVEKVLELGVSTILNLSEIPDIRAPSTRFTNSAKGDSLAILLYTSGSTGQPKGVCLPQSGFINYLAAKRKELGLDSSTVVLQQSSLGFDMGLAQTLNAIMNGGKLVIVPQELRGDSIEIARIIRDQKVTFTLATPSEYLVMLQHGREYLHNYAGWRHACLGGEPFTDQLKREFVRLGKNCPVVQDSYGVTEISACTTFETMTASQLEEARSVGRTIPNTSLYIVDADCNLVATGEPGEICISGAGVALGYLNEEQTRLKFVQDPFALPDDIARGWTRVYRTGDKAKLLDDGSLILLGRMDGNTEVKVRGLRIDLEDVASTMVNCHPDLLSSAIVCVKGQGVSETLVAFVAMMPGQTASDVELQHLACNLPLPQYMRPSTVICLDELPRNANGKIDRKRIDAMPWTAPTTLSQSSKRLTLGEGELKLLWQVLLPGKHIQPESDFFLLGGNSTLLVRLQGAIRTSIGVSLTLREMYGASTLAQMALKVDARKAESPSMTINWLAETAIPQHILDRASSTSNLNLPKHCQGSGCQILLTGSTSFLGRVLVQLLLQVPEVERVHCIAVEKEQEHVPPTSDKVSLYYGSLLDPNLGLSTAEWASLQDRVDVVIHNGSNGHCLNTYNSLKGPNLGSTHRLAEFALQSQVPLHYISSGRVILQSGQTALGPTSVSFHPPPLDGSDGLTATKWAGEVFLERLAEHTDISISIHRPCTPIGDQAPAQDALNSLLRYSVNLGATPRLTRMEGYLDFQKVEIIAEEIATLVTSRFTKRSNTSSFTTRGVSFFHHSSNIKVPVKSFKEYMEKVHGRPFQELNLREWSSLALEQGIEPLIPSFLEAVDDNEETLRYPYLGN", "sequence_length": 3907, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0b49723128d27042d4d39a17d94468a0f04bb7aa5a35d37d0e5c7a8dd5689153", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B6F209.json", "taxon_id": "5062", "uniprot_accession": "B6F209", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces clavuligerus", "origins": [ { "cited_uniprot_accession": "E2PZ83", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/holomycin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:156451", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/holomycin.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF13193" ], "protein_name": "Phenyloxazoline synthase MbtB", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MVKRGVEFMEDLVAESLNSHPQTLPGAESRPAERHDAFPLTDIQHGYLIGRHKGLELGGVSSHYFFEFDGPALDVPRLTTALGRVVERHDMLRAVTDADGAQRVLAETPPYAIAVTDLREVSDAERDEALARIRAELENQVLPSDRWPPFDIRATHLPDRRTRLHVSVDLLFVDVRSLLLVLAEWRRFYDDPAWSPAPLDHTFRDHVLAERELRDGPAGRRAADYWTARLDEIPPAPDLPLATAPEQIGPPSFVLHRAVLPQDRWAALSATARRHGLTPSNLLLAAYAEVLRTWSRRQEFTLTLTLFKRLPLHPETNGVVGNFLSPNLLTVDGRSDETFGRRAARVQNRLLADLEHSAYGGVQVLRELTRRQGDGRNVSMPVVFTSTLDGDEGDAKGDPLSVFGELAHSASQTPQVWLENQVFEENGALTVNWNAVDGLFAPDTLDAMFHAYLALLDRLTDDESAWETAGGAVPLPAAELAERRAANATATDIPPRRLHELVHEAALRRPDAVAVITDGTEVTYRTLQENAHRIARRLRAEGCAEPDTLVAVSMRPGAAQIAALLGVLHAGAAYVAIDPELPEERRHSLLHRCRARAVVTEVELGASLSWPGGIQVVTPDDPATLRCGTGPLESRQSVDDLAYVIFTSGSTGEPKGVMISHRSAANTVQDINARFEVNERDRVLALAPAGFDLSVYDVFGILGAGGCVVVPSAGRGNDVAHWTELLDRHGVTVWNSVPAPMRLWTESLADLAEQDGAGHGGSLRLALLSGDWIPVALPGQIRRRVPGMRTISLGGATEGSIWSVCYPIGEVPADWTSIPYGKPLANQTLHVLNTWLEPSPRGVTGDIYIGGVGVAQGYWSDPVRTAERFIEHPVTGERLYRTGDLGRYLPGGDIEILGREDFQVKINGYRVELGEIEAALGRLPGMRQVMVTAPAHPRTGQRQLTAHLVGDDPAVLEPVALRTAMEAVLPGYMVPSHYLTRDALPLTANGKIDRDALALPWSDGDVAQGRTAPRGTVEERLFALWAELLGHSEFGVEDGFFDVGGDSLHAVRIIARLRADFGIDENAEQQVIEGLFMNATIADFTEVVRPFEEAGA", "sequence_length": 1096, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b27473a4fd8f5b7a2741874ab4581030ce0dfe5582d97e313ea2ad9e44f6a8c4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E2PZ83.json", "taxon_id": "1901", "uniprot_accession": "E2PZ83", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Trichoderma reesei (strain QM6a)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acp-sdga-c-pf23297.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acp-sdga-c-pf23297.yaml" } ], "pfam_ids": [ "PF00109", "PF00501", "PF00550", "PF00668", "PF00698", "PF02801", "PF07993", "PF08242", "PF08659", "PF14765", "PF16197", "PF21089", "PF23297" ], "protein_name": "Hybrid PKS-NRPS synthetase iliA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDQQRQQDGRFREPIAVIGSACRFPGACSSPSKLWDLLQQPRDVLKEFHPERLNLSRFHHKSGDTHGATDVGNKSYLLEEDTRLFDAAFFGISPIEAAGMDPQQRILLEAVYETFESAGVTLDELRGSFTSVHVGCMTSDWANIQARDTETVPKYNATGSANSILSNRISYIFDLKGPSETIDTACSSSLVALHNAARGLLNGDCNAAVVAGVNLILDPAPFINESKLHMLSPDARSRMWDKDANGYARGEGAGALLLKTLSQALKDGDHIEGLVRATGVNSDGQSPGITMPYSPTQTALIQQTYARAGLDPIKDRPQYIECHGTGTPAGDPVEARALSNAFIGHVDKSTENPILVGSIKTVIGHLEGGAGIAGVIKVLLSIKYRVIPPNLLFKDLNPDIAPYYGPLQIPTTAVPWPELPPGTPARASVNSFGFGGTNAHAVIESFDESFGPRASSADEGVVGPLLFSAKSGASLLRSVRDNLEYLQKDASLDLRDLSAFLQSRRTTHRVRAHFTGSSRDAVLENMTNFITTHAQSASDQIGHQPQLINPKEVPGVLGVFTGQGAQWPAMGRELYCKSALFRKTIEECEAVLDALPQQDRPDWSLTEELMKDAISSRISEAALSQPLCSAVQLALVKLLQAAGIAFDAVVGHSSGEIAATFAAGIITLQGAMQIAYYRGLHAKSAGGANHAKGAMMAVGLSFAEAKQFCSRPEFDGKIKVAASNAPKSVTISGDVDAIVQAHEILQADNIFARRLQVDTAYHSHHMLPCCQPYLNSLLACNIKVMQPTGKCTWISSVRGDTQLLRGDLSSLKGQYWVDNMVRTVLFTQAIESSIWHGGPFDLAIEVGPHPALKGPTEQTLKASYGILPVYTGVLKRGENNVEAFSAAVGTTWAQLGPAFVDFAGYRNLFYEAETPVFKIPKGLPLYSWDHDKVFWREGRLSRRFRLGNDQGHELLGRRTLDDNDTELRWRNVLKLGEMPWLRGHEVLGEVLLPGASYVSVAVQAGHNIAMTMGKNVRLIEISNVDILRPVVVPEGTDGVETLFTTRIVETTRDHIKAEFMYYVCPDESLGTMLRTCNGEVMVYLETQTDIASPDTLPAKDAMPLNLTKIDTERVYSLFKDIGLNYSGLFRGISTIERKLDYASTRSTWVDGLDSAYVVHPAMLDVAFQTMFIAKAHPASRQINSALLPSHIDRVRINPSVQFTQPNEVAETAAEFETWAVKQTANSLVGDLNIYDAATGKTFLQVEGLAVNSVGEQDASSDNSMFSRTLWGQDVTLGLPDPVRDPVKDAEGLQMAHAVERVAVFYVKNILKEVKKEERADFQWYHQRMFEAFENHISIVKNGEHPIILPEWLDDEESILDELDSKHGDTIDFKLLHAVGKDLAHVVRGNKQMLEVMTKNDMLNRFYMEGYASVPTNKAVGDVMRQLSFKFPRAKILEIGAGTGGTSWSVLKSINDAYESYTYTDVSSGFFHLAEEKFSDFAHKIIFKVLDIEQEPKEQGFKEQSYDIIIAALVLHATHDLERTMRHARSLLKPGGFLVMVELTGTMSVRATLVMGGLPGWWLGENDGRRLSPLVTAIEWDRLLQNTGFSGADAVIHDLADEEKHCTALIMGQAVDDDFQRLRSPLSTVAELPPPDDPILVIGGKRLSTSKVIREIQKLFPRKWARHVRVYKSIDEVNVSGITPGLDVLSLQDLDESPFSHTITAHELFIMAGRSGSSWVAAVTNANTSIARVHGTHVIPIDEQDCSPERLSAIANYILSWSISTVAGPHASVLLFEAHDSLAASVKAQLAAAGGKAFFASTRTHGTPANGIKIHALASKRSIQRVVPHDVQLFIDCSLDSSPAAATLTQSMPSNCISRQLDVQLVQEALRSAHRESVELLKEAFAFPGVESPAVPVVPAQTLAGRSFMSLKAQAYVTDWTTQVISTTVPPLSLEGLFRPDKTYFMAGMAGGLGLSICQWMIRNGAKHMVITSRNPQVNTATLEEAERVGATVKVLAMDLTNRESVEKVVQQIRETMPPIAGVCNAAMVLKDGFFVDMDVDQFNNTLAAKVIGSENLDSVFSSTPLDFFILLGSVASVIGNVGQSNYHAANLFMDSLVHQRRARGLAASIVHIAYVTDVGYVTREERDRQLDSHFRKVRLMPTSETDVHHAFAEAVKGGKPGSTSGYHDIIMGIEPLREQIPLDQQPLWMKNPRFAHFDQHAIHAQHERGSTGSIDNVRALVEKAEKEEEAIDAVMAAFCAKLESILQLTAGCINVQRPITDLGIDSLVAVEIRTWFLKELGADVPVVKILGGDTVQQLSTIATKKLLAKNMEAGAEKKSTIEKPAEATAPVPTSKQEESISSNSSYTKDDTPELEDEYESSVGVAAEEADEMRVRPGIIREERMSPAQARLWFMSQHLENSAAYNMAFRYKVKGPIGTARLKHALSFTTHKHECLRMCFYSHLEDGHPMQGLMASSLCNFKHTVHASEDDVAREMSRLSTCQWNLQYGHTMEVSLLSRDSEDHDLIIAYHHIVMDVIGLGVVLDDLNNAYNMKPVNKSAGSYIEFSVKQLEQQARGDFDKQLSFWEAEFRTIPQRLPRLPFARIGSPSGVAESVPDTYHQYRELNDTQFASLKATCQKLRISPFHFHLSLLQVLLSRYTNTDDLCIGIVDANRNDHRYAGTVGCFVNMVPVRLHVPPGKASFADVAQQTRRSALQALEHSAVPFDMILDKIKAPRSSRSTPLFQAALNYRTGSIWELPLGRAKMTMADVKDANNPYDLSLGIAETRTGCMVEVYVSSSAYGAEACATIMDAYMRLLDDFSNTPDLQINDCNIYGKPEIDSSLSIGQGPVIHFEWPATLSQRFLDMVRLHHGDPAVTDKTGTLTYSELLERVNGVSDTLIRHGCKSGTRIAVLCEPSIDTIVAMLAILHIGAVYVPLDVSLPTARHVAMIQSSKPSFVVNHASTDGQARECIGKIEFPIRRVVLDDVIEEEIRVTVPCLASPDACSIVLFTSGSTGTPKGIMLSQANFANHLALKTHLLGLGKETVLQQSSTGFDMSIVQMFCALANGGRLVIAPFDIRRDPIEMVSLVCSEHISLSIATPSEYLAWTRYGISSLKENTAWRHICMGGESVTRQLVLELRRLGLPNLRVTNCYGPTEITAAASFQPIDLGGQEDAHPDMVKYKVGKVLPNYTVSILDARGSPQPVNHTGEVCIGGAGVALGYISASDDAASKFIVTAQGQRMYRTGDRGRLLSDGTLLLFGRIEGDSQIKLRGIRVDLQEVELAVLEAADGLLSNVVVSQRGDVLIAHATVPPGEPEATLITEDDLNRVLRRLDLPQYFIPARIVILSSLPTNANGKLDRKAIAALPLPSCQSRADSGSEEEKMTIEEGELRLLWERVLPQVAPLTRIAPSSDFFLLGGNSLLLMKLQAAMKDSMNVMMSTRKLYQASTLREMARAVDKQRRSQAEHDDQREIDWAAETAIPKWLLNQIHEQSQSKQVVGAKSPVEKISVLMTGATTFLGGHLLKSLLESDKVSKIYCIAVLADDQHLLPENEKIESFNGSLLSPTLGLDATERVRLESTADIIVHAGGSGHCLNTYATLRIPNVISTHFLASMALPRSIPLLFLSSSRVVLLTGNTSPPAASVSGFPPATDGREGHMMSKWTSEVFLENLVGHLLASSPRHQQNPWTVSVHRPSVIVSEHAPNSDALNAILRYSILMQSSPRMDNVVGYLDLAQLDTVIAELRQSVIQLGSGQGKQESTNILFKHHSGGIKVPASELWSHLGKVYGITFDEVELDEWLRRAARAGIDPLITAYLEAIQANGAKMIFPYMGSD", "sequence_length": 3812, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87ef695c2eebdb47d818b7cdf0a9ba87fa359ba92c21c56a2a0cb50a2f6908cd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G0REX6.json", "taxon_id": "431241", "uniprot_accession": "G0REX6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "G3XCV2", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/pyochelin-biosynthesis.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042864", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/pyochelin-biosynthesis.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668" ], "protein_name": "Pyochelin synthetase PchE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLPPDSRTALRDWLTEQLADLLGEPLADVRALADDDDLLGCGLDSIRLMYLQERLRARGSTLDFAQLAQRPCLGAWLDLLACADRLSAPATVALPTAQDRDQPFELSSVQQAYWLGRGAGEVLGNVSCHAFLEFRTRDVDPQRLAAAAECVRQRHPMLRARFLDGRQQILPTPPLSCFDLQDWRTLQVDEAERDWQALRDWRAHECLAVERGQVFLLGLVRMPGGEDRLWLSLDLLAADVESLRLLLAELGVAYLAPERLAEPPALHFADYLAHRAAQRAEAAARARDYWLERLPRLPDAPALPLACAPESIRQPRTRRLAFQLSAGESRRLERLAAQHGVTLSSVFGCAFALVLARWSESAEFLLNVPLFDRHADDPRIGEVIADFTTLLLLECRMQAGVSFAEAVKSFQRNLHGAIDHAAFPALEVLREARRQGQPRSAPVVFASNLGEEGFVPAAFRDAFGDLHDMLSQTPQVWLDHQLYRVGDGILLAWDSVVGLFPEGLPETMFEAYVGLLQRLCDSAWGQPADLPLPWAQQARRALLNGQPACATARTLHRDFFLRAAEAPDADALLYRDQRVTRGELAERALRIAGGLREAGVRPGDAVEVSLPRGPQQVAAVFGVLAAGACYVPLDIDQPPARRRLIEEAAGVCLAITEEDDPQALPPRLDVQRLLRGPALAAPVPLAPQASAYVIYTSGSTGVPKGVEVSHAAAINTIDALLDLLRVNASDRLLAVSALDFDLSVFDLFGGLGAGASLVLPAQEQARDAAAWAEAIQRHAVSLWNSAPALLEMALSLPASQADYRSLRAVLLSGDWVALDLPGRLRPRCAEGCRLHVLGGATEAGIWSNLQSVDTVPPHWRSIPYGRPLPGQAYRVVDTHGRDVPDLVVGELWIGGASLARGYRNDPELSARRFVHDAQGRWYRTGDRGRYWGDGTLEFLGRVDQQVKVRGQRIELGEVEAALCAQAGVESACAAVLGGGVASLGAVLVPRLAPRAEGSMDLPAAQPFAGLAEAEAVLTREILGALLEAPLELDDGLRRRWLDWLADSAASALPSLDEALRRLGWQAAGLTAMGNALRGLLAGEQAPAALLLDPWLAPQAVAARLPDGREALARLLEALPTPAAGERLRVAVLDTRAGLWLDQGMASLLRPGLELTLFERSRVLLDAAATRLPERIVVQALDDGLLPAEHLGRYDRVISFAALHAYEASREGLALAAALLRPQGRLLLVDLLCESPLALLGAALLDDRPLRLAELPSLLADLAAAGLAPRCLWRSERIALVEALAPGLGLDAAALQAGLEQRLPQAMRPERLWCLPSLPLNGNGKVDRRRLAESMTRALGECRHEPSAEEPLEAHEQALAECWEAVLKRPVRRREASFFSLGGDSLLATRLLAGIRERFGVRLGMADFYRQPTLAGLARHLQVQTVEIEETQLEEGVL", "sequence_length": 1438, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b637aa5456390056573620b1b230505cba061993ec739af8fec51764a95f124", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G3XCV2.json", "taxon_id": "208964", "uniprot_accession": "G3XCV2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acinetobacter bouvetii DSM 14964 = CIP 107468", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:N9DJ67", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00668" ], "protein_name": "Condensation domain-containing protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d35c4c614ab4b5c45d0297b9621a4b059aed140853eb5447d4e48e813fa4cdc7", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": false, "sequence": "MQTMDSLAPLTRAQHSMWKGHHHHGSYPFHTAEWLVIDGPLNRELFHQAIEFTLKEAKALHWRALEKDGRVYRIDDVDVRPPQFADLSHLDDQAILDWADCAVEPPFDLSAGHLYDYVFAHLDDNKYGLFFRAHHVALDGYAYGLMINRFLDYYQSLKNASALKNKAFDHFEKFLADEQRYLASPKAEQDLQFWRENFSHELAPKKRLKRKLKQPFYQGPRYEEVIDWETQQKMNALAAELKLPSAMVVMAVMMSYLVKQSGDSKQCFGVPMMSRLGTASMRIPCLVMNILPLRLAGTGQENLKETVQLLAQRFAEVRPHQNSYFEQMRFVLDGFDPFDNILFGPIVNWIPYPLPEYFEGCHLTKTTISAGPIEDFDIAITNKFVDGVERLYLAVDGHKELYNVEALGEYWHDFMRMLRLWLQQPEQLANQLSIEKKLPD", "sequence_length": 440, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d35c4c614ab4b5c45d0297b9621a4b059aed140853eb5447d4e48e813fa4cdc7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/N9DJ67.json", "taxon_id": "1120925", "uniprot_accession": "N9DJ67", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O31782", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00109", "PF00501", "PF00550", "PF00668", "PF02801", "PF08659", "PF13193", "PF14765", "PF21089", "PF22336" ], "protein_name": "Polyketide synthase PksN", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "aa70b66c712172cbe1f8ba711735104f2fe3bc33072a9de6928291c58eb4883c", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKRQLKSPLSEGQKGLWMLQKMSPGMSAYNIPLCFRFSKPIHAETFKKALLFVQRQYPVLASVIQEENGIPFQSVQLSKDLYFVEEDISAMKSADIMPFLKEKAKEPFQLEAGPLWRTHLFHRLEECIVLITIHHIIFDGVSMLTLISALFEAYQQLLNGIEPLQQPSTADYYDFVDWENRMLTGREGEEHLAYWKEQLSGSLPVLDLPADRPRSSARKFKGQAYKSLLPHHLRNQIKSFARTNHVNESVVFLSIYKVLLHHYTKQKDIIVGVPTMGRQEDRFETLIGYFINMMAVRSKNIGSQPLTAFIRELQLTVAVGLDHAAFPFPALVRELNVDRSAADSPVFQTAFLYQNFFQATGLQKVLEPYQTLGIEYIEDIRQEGEFELALEIYEQENETVLHLLYNPDLYELSSIESMMENYMKLAQHMMEDPSLPLEAYSLQLNQEQTSLLEQWNATGTNIANDKCIHEVFEEKAKQTPDAVAVMFEDRSLTYKEVDEKSTSVAVYLQHQGVRPEQPVGICAERSFDMIIGILGILKAGGAYVPLDPSFPQERLKYMLKDSQASIVLTQPNVHDRISGLTGSHVKAINIELACRNGYTDQQSSGLKREVKPEHLAYIIYTSGSTGEPKGVMVEHRSIMNTLNFLESHYPVTAEDAYLLKTNYVFDVSISELFGWFIGDGRLVILPPNGEKSPQLCMDYIETYKVTHINFVPAMLHVFLEMAKDNKRFTEDGPLKYMMVAGEAFPKVLVKKAVSLFTNCRVENIYGPTEASIYAAYFGCGKGDIASHHTPIGKPVSNTKIYIVDQHLKPVPIGKPGELCIAGAGLARGYFKKPGLTAEKFIDNPFESGTKLYKSGDSARWLPDGNIEYLGRIDSQVKIRGFRVELGAIETKLGEFPGILDQAVVVKQLEGHQQLAAYYTEESGHASANPKDLRLHLKSSLPEYMIPSHFIRLDELPLSPSGKVNRKELEKREIVFNRRKPNHLQLTEIEDQVLRIWEETLKVSGFGPEDGFFDAGGDSLLAVAVAERIKKEFDCEFHVTELFEYSTIRAISEYILEMKNSDLAGTQNEDDHDDKKDGKYPKQKIPPYFDDSVAIVGISCQFPGAKNHHDFWNHIKEGKESIRFFSEEELRANGVPEELIQHPDYVPVQSVIEGKDLFDPGFFQISPKDAEYMDPQLRLLLLHSWKAIEDAGYVAKEIPATSVYMSASSNSYRTLLPKETTEGHESPDGYVSWVLAQSGTIPTMISHKLGLKGPSYFVHSNCSSSLVGLYQAYKSLTSGESQYALVGGATLHAQSAIGYVHQNGLNFSSDGHVKAFDASADGMAGGEGVAVILLKKAVDAVKDGDHIYAIMRGIGINNDGAEKAGFYAPSVKGQTEVIQHVLDTTKIHPETVSYIEAHGTGTKLGDPIEMSALNKVYKQYTDKTQFCGIGSVKTNIGHLDTAAGLAGCIKVAMSLYHNELAPTINCTEPNPDIKFESSPFYVVRERKSLEKHAGVHRAALSSFGLGGTNAHAIFEQYENISDAGAENEGNQPYIIPISAKNSERLQVYAKEMLSYISQDEQRHFSLRDIAYTFQVGREAMDNRIVFIVNDLEEWKHQLEAFVTGKPLAEGCIQGEKTRMTSAEQLLGNAEADDMASSRISKEELRKLAEMWANGFHVEWRRLYPNIKPRRISLPTYPFAEERYWPESSTGAITTIEPSRLHPLVHHNTSVLSEQRFSSIFTGQEYFIAEHIIKGMAILPAAVTLEMARAAIEQGIGGLEDHETGIRLKNVVWVRPVVAGSEPVQVNIGLYDEDGGHIAYRMYGDPESADAEPVVYNQGKAELIQLKREKALDLSKIKKQCDQSKMDAASFYEGMIGADYGPGYKSVEAVYKGDGQLLAKLSLPESVAHTLGDYVLHPSVMDGALQAAEYLQNVVRAELSDTEDFKAALPFALEELEVFRQCVSDMWVYVQFNSKNKPGDLIQKVDIHLCDEHGMICVRLKGFSTRVMEADIQTEPSKINAETLLLQPVWQEQKAANSLAAKKYAEHLVFLCEYDHETRKQIEAAIEDVHVYSLEARPSSVDGRFHSYTEQVFKKVQEIIRTKPKDGILVQIVTSAEGEQQLFSGLTGLLKTACQENAKLTGQMIEVSSEESGESIAGKLLENQMSSDSYVKYQNGTRYIADWREIKQAKGDGSKPWKDNGVYLISGGAGGLGHIFAKEIAEQTKNATVILAGRSPLSESKSKKLKELHSKGADITYRQTDVTNKIEVYQLIDDIQKRYGRLNGILHSAGIIKDSYLVNKQAKDLHDVLAPKVKGLVYLDEASKDLPLDFFILFSSLSGSLGSIGQSDYAAANVFMDMYAGYRNRLADLSQRHGQTLSVNWPLWRDGGMQVDQETEKRLVQLAGIVPMRAEKGIQALYQALHSEANQVMVIEGDVQKIKQNMLAKNASAPMEKKEAEHMTEQINSIDADSLLDKVKAMLKREIAKLLKVKLETIDDHAEMTVYGFDSISMTEFTNHINRAYQLELTPTVFFDHPTIHAFGKHLSEEYQSVFAKTFAVRAVSAQLQPAAKQEQAVRAKAKRRRKQQVMLPNAIQSDAGPEPIAIVGISGIFPMAKDVEAYWNILKEGKDCMTEIPKDRWDWREYEGDPAKEVNKTNVKWGGFIDGIADFDPLFFGISPREAEQMEPQQRLLLTYAWKAIEDAGYSAKRLSGTKTGVFIGTGNTGYSSLLSKANSAIEGSAAANTSPSVGPNRVSYFLNLHGPSEPVDTACSSSLVAIHHAISSIEEGTCDMALAGGVNTIILPEVYISFDKAGALSKEGKCKTFSNQADGFAHGEGAGILFLKKLKAAEEAGDHIYGVIKGSAINHGGRAASLTTPNPKAQADVIQSAYQKAGIDPKTVTYIEAHGTGTELGDPVEINGLKSAFKALGVNEGDTSANPYCGLGSVKTNIGHLSLAAGAAGVIKILLQLKHKTLVKSLHCENVNPYIQLKNSPFYIVRETEEWKALKNEQGEELPRRAGVSSFGIGGVNAHVIIEEYIPEASDENIPSIAPEHPGIFVLSAKNEARLKEHAQQLADALDKQTYSDVNLARIAYTLQAGRDAMEERLGIISGSIEDLQKKLKDFAAEKSGVEDVFKGRIDKGTLQMLTEDEEIQEAVEKWMERGKYAKLLELWVKGLDVDWTKLYGENLPKRISLPTYPFAKDRYWISDHIEKSGSIDANQAASRLGGAVLHPLMHQNTSNLSEQRFSSIYTGEEFFLADHVVKGQRILPGVAHLELARAAVEQAAEVQGVPRIMKLKNAVWVRPIVVEDQPQQVHIRLLPGENGEISYEIYGHSDVTGEQSIVYSQGSAVLNPAENLPAVDLQSLREQCQESHFSVNEVYDTYRMIGFEYGPAYRGVKKIYTAEQFVLAKLSLHPSAADTLSQYKMHPGLMDSALQASSILTGAGDNQLTLPFAVQELEVFGACSSEMWVYARYSQGSKATDKVQKRDMDILDESGNVCVRMKGLSFRAAEGGSGSAESDQTLATLMFEEKWVPKDFKKESPEPHYERHIVMLCDMNGLSKDRIESRMTGAECIVLESFREGLAERFQDYAEQALETVQGLLKSRPQGNVLIQLLTSAQRKQYSFSGLSALLKTAGLENKKLIGQTIEIDSHENVESVIEKLKENKRHTEDQHIKYEKGKRYINDLDEMQIDDREISMPWRDKGVYLITGGAGGLGFIFAKEIARQAEQPVLILTGRSALNADQQAELNELQQLGARAEYRQVDVTQTEAASELITSITSDYEDLNGVIHSAGLIKDNYLMSKTNEELTQVLAPKVKGLVNVDEATEHLALDFFILFSSISSVAGSAGQADYAMANAFMDSYAAYRNALVTAMYRHGQTLSINWPLWKEGGMRANKEIENMTLKNTGVTPMRTETGIQALYKGLAFGKDQVIVMEGFKDMMREKLTQKPSSDDVPMKTVQVRVTSEARMDQGNMFDHIQEVLKQTISQLLKIKPEEIDPDMEFNQYGFDSITLTEFANTLNEKCKLDLTPTVFFEHATVYAFAGYLSEEYPNAFTAQTPAKAEVLMQPVEQNIKNMTFSTENRFVKPSVTPMQKEADHKPEPIAIVGMSGVFPKAKDVEEYWKNLSSGADCITEVPKDRWDWQEYYGDPLKEANKTNVKWGGFIDEVADFDPLFFGISPLEAEQMEPQQRLLMTYAWKAVEEAGHSARSLAGTKTGIFIGTGNTGYSSLLSNVDIEGSAAANMSPSAGPNRVSYFLNIHGPSEPIDTACSSSLVAIHHAVCAIENGNCEMAIAGGVNTVVTPQGHIAYDKAGALSKEGRCKTFSDKADGFAVSEGAGILFLKKLTAAERDGDHIYGVIKGSAVNHGGRANSLTTPNPKAQADVVKTAYEKAGIDPRTVTYIEAHGTGTELGDPVEINGLKAAFKELYEKTGDPAVHGSHCGLGSAKTNIGHLSLAAGVAGVIKVLLQLKHKTLVKSLYSETVNPYIRLDDSPFYIVQESREWQALRDEAGRELPRRAGISSFGIGGVNAHVVIEEYIPKETTHPATAPAVTAQHPGIFILSAKDEDRLKDQARQLADFISKRSITARDLTDIAYTLQEGRDAMEERLGIIAVSTGDLLEKLNLFIEGGTNAKYMYRGRAEKGIAQTLRSDDEVQKTLNNSWEPHIYERLLDLWVKGMEIGWSKLYDGKQPKRISLPTYPFAKERYWITDTKEEAAAHQTALKTVESAALHPLIHVNTSDLSEQRFSSAFTGAEFFFADHKVKGKPVMPGVAYLEMVHAAVTRAVRRTEDQQSVIHIKNVVWVQPIVADGQPVQVDISLNPQQDGEIAFNVYTEAAHNDRKIHCQGSASIRGAGDIPVQDISALQDQCSLSTLSHDQCYELFKAIGIDYGPGFQGIDRLYIGRNQALAELSLPAGVTHTLNEFVLHPSMADSALQASIGLKLNSGDEQLSLPFALQELEIFSPCTNKMWVSVTSRPNEDKIQRLDIDLCDEQGRVCVRIKGITSRLLEEGIQPPDGPTSLGNSKATLNGALLMAPIWDRVQLEKRSISPADERVVILGGDDNSRKAVQREFPFAKELYIEPNASIHRITGQLEALGSFDHIVWMSPSRVTECEVGDEMIEAQDQGVIQMYRLIKAMLSLGYGQKEISWTIVTVNTQYVDQHDIVDPVDAGVHGLIGSMSKEYPNWQTKLIDVKKYEDLPLSQLLSLPADQEGNTWAYRNKIWHKLRLIPVHNNQPVHTKYKHGGVYVVIGGAGGIGEAWSEYMIRTYQAQIVWIGRRKKDAAIQSKLDRFARLGRAPYYIQADAANREELERAYETMKQTHREINGIIHSAIVLQDRSLMNMSEECFRNVLAAKVDVSVRMAQVFRHEPLDFVLFFSSVQSFARASGQSNYAAGCSFKDAFAQRLSQVWPCTVAVMNWSYWGSIGVVSSPDYQKRMAQAGIGSIEAPEAMEALELLLGGPLKQLVMMKMANETNDEAEQTEETIEVYPETHGSAIQKLRSYHPGDNTKIQQLL", "sequence_length": 5488, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "aa70b66c712172cbe1f8ba711735104f2fe3bc33072a9de6928291c58eb4883c", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O31782.json", "taxon_id": "224308", "uniprot_accession": "O31782", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O31827", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF00975", "PF13193" ], "protein_name": "Plipastatin synthase subunit E", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e6fceaf09f8186e192f01a73e00597e150404758edaf57e405248e4075841ca8", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKKGADTMNTIKKIKNIYPLSHMQEGMLFHSFLRKEEGAYVEQSLFTIKGSLSYDWFQRSIQAIIDRHDIFRTVFLPHVPHLSGPRQVVMTEREFHLNSEDISHLPTNDQNEYIERFKEKDKQKGFDLQKDMLMRISLFKTAKDEHVCIWSHHHILMDGWCLGIVMQEFMQIYQSIHAGKPLSLDPVRPYSTYISWLTNRDKEKAAAYWDTYLKNYSAPSPLPRVSDKETKESYHREDLIFSLNKPLTDKLKETAKQHGVTLATLIQAVWGVMLQQYNRTDDVVFGAVVSGRPSEIPGVEQMIGLFINTIPIRIKTHQDETFHELLIRCQKEMLEAEPFTCQPLFDIQANTALKQELIDHIIVFENYPLQQKIADSADQTDSPLQIDQVQVSEQSGYNFNLVVAPGEELVIKFSYNAFVYDAAWISCIKRQFTQALSTAAQHPHMPIADFSFLDATEKEQIVTQFNNTKTEYPKNHTIIDLFREQAEKTPDHTALVYGNMSISYKELDKRSNALARELIQKGFRKNETAGILAAHSPEFMISVLAVLKAGGAYLPLDAELPPERVSFMLEETQAKMLIVQKGLEQNAAFSGTCIISDAQGLMEENDIPINISSSPDDLAYIMYTSGSTGRPKGVMITNRNVVSLVRNSNYTSASGDDRFIMTGSISFDAVTFEMFGALLNGASLHIIDKSTMLTPDRFGAYLLENDITVLFLTTALFNQLAQVRADMFRGLHTLYVGGEALSPALMNAVRHACPDLALHNIYGPTENTTFSTFFEMKRDYAGPIPIGKPISNSTAYILDTKGRLLPIGVPGELCVGGDGVAKGYLNRVDLTNAVFSPHPFLPGERIYRTGDLARWLPDGNLEYISRIDRQMKIRGKRIEPAEIEARLLEMEGVQEAAVTLREKDGEAQLYTHYVGDHKKTDTDFRADLARVLPDYMIPQHWVRVERMPLTGNGKIDRSALPIPENKPAKRQNIILPRNLVEEELANIWKQVLGVNTISIDDDFFAIGGHSLRALQVIHTLKHQQNIDIPIDFLFEHPTIAQLAEKLYSKQLTAANEQHVIKLNQHGAQNLFCFPPISGFGIYFKDLALLLNEKAAVYGFHFIEQDTRIEQYVNCMTDIQPEGPYVLLGYSAGGNLAFEVAQAMERKGLEVSDFIIVDAYLKEQPLPIDTGNDESAAYLPEAVREKVMKKKRNYQEYWAQLLNEGHIKASIHFIEAGIHPETSGHTGLTKWEGACGNYSEYTGFGAHKDMLEGTYAEKNADIILDILEKITSNQVILHKR", "sequence_length": 1279, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e6fceaf09f8186e192f01a73e00597e150404758edaf57e405248e4075841ca8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31827.json", "taxon_id": "224308", "uniprot_accession": "O31827", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/condensation-pf00668.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF00668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/condensation-pf00668.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P11454", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF00975" ], "protein_name": "Enterobactin synthase component F", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6bff2a8b4e25bc41a67d0f2eed3e04141f2c0b13df184404e9ab1890f6c15974", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSQHLPLVAAQPGIWMAEKLSELPSAWSVAHYVELTGEVDSPLLARAVVAGLAQADTLRMRFTEDNGEVWQWVDDALTFELPEIIDLRTNIDPHGTAQALMQADLQQDLRVDSGKPLVFHQLIQVADNRWYWYQRYHHLLVDGFSFPAITRQIANIYCTWLRGEPTPASPFTPFADVVEEYQQYRESEAWQRDAAFWAEQRRQLPPPASLSPAPLPGRSASADILRLKLEFTDGEFRQLATQLSGVQRTDLALALAALWLGRLCNRMDYAAGFIFMRRLGSAALTATGPVLNVLPLGIHIAAQETLPELATRLAAQLKKMRRHQRYDAEQIVRDSGRAAGDEPLFGPVLNIKVFDYQLDIPDVQAQTHTLATGPVNDLELALFPDVHGDLSIEILANKQRYDEPTLIQHAERLKMLIAQFAADPALLCGDVDIMLPGEYAQLAQLNATQVEIPETTLSALVAEQAAKTPDAPALADARYLFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTDDQLPRFSDVPNLTSLCYNAPLTPQGSAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTGEDVVAQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPQTARQSCATLKQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAQVRGSSVPIGYPVWNTGLRILDAMMHPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDNGAVEYLGRSDDQLKIRGQRIELGEIDRVMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRETLPPHMVPVVLLQLPQLPLSANGKLDRKALPLPELKAQAPGRAPKAGSETIIAAAFSSLLGCDVQDADADFFALGGHSLLAMKLAAQLSRQVARQVTPGQVMVASTVAKLATIIDAEEDSTRRMGFETILPLREGNGPTLFCFHPASGFAWQFSVLSRYLDPQWSIIGIQSPRPNGPMQTAANLDEVCEAHLATLLEQQPHGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGSTSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWIAELDIYRQDCAHVDIISPGTFEKIGPIIRATLNR", "sequence_length": 1293, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6bff2a8b4e25bc41a67d0f2eed3e04141f2c0b13df184404e9ab1890f6c15974", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P11454.json", "taxon_id": "83333", "uniprot_accession": "P11454", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P27206", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF13193" ], "protein_name": "Surfactin synthase subunit 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "66e045cc2c62f7df9e3f2f8f0b6b40e9ff3389a53eb862bde1107f77f9647c83", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEITFYPLTDAQKRIWYTEKFYPHTSISNLAGIGKLVSADAIDYVLVEQAIQEFIRRNDAMRLRLRLDENGEPVQYISEYRPVDIKHTDTTEDPNAIEFISQWSREETKKPLPLYDCDLFRFSLFTIKENEVWFYANVHHVISDGISMNILGNAIMHIYLELASGSETKEGISHSFIDHVLSEQEYAQSKRFEKDKAFWNKQFESVPELVSLKRNASAGGSLDAERFSKDVPEALHQQILSFCEANKVSVLSVFQSLLAAYLYRVSGQNDVVTGTFMGNRTNAKEKQMLGMFVSTVPLRTNIDGGQAFSEFVKDRMKDLMKTLRHQKYPYNLLINDLRETKSSLTKLFTVSLEYQVMQWQKEEDLAFLTEPIFSGSGLNDVSIHVKDRWDTGKLTIDFDYRTDLFSREEINMICERMITMLENALTHPEHTIDELTLISDAEKEKLLARAGGKSVSYRKDMTIPELFQEKAELLSDHPAVVFEDRTLSYRTLHEQSARIANVLKQKGVGPDSPVAVLIERSERMITAIMGILKAGGAYVPIDPGFPAERIQYILEDCGADFILTESKVAAPEADAELIDLDQAIEEGAEESLNADVNARNLAYIIYTSGTTGRPKGVMIEHRQVHHLVESLQQTIYQSGSQTLRMALLAPFHFDASVKQIFASLLLGQTLYIVPKKTVTNGAALTAYYRKNSIEATDGTPAHLQMLAAAGDFEGLKLKHMLIGGEGLSSVVADKLLKLFKEAGTAPRLTNVYGPTETCVDASVHPVIPENAVQSAYVPIGKALGNNRLYILDQKGRLQPEGVAGELYIAGDGVGRGYLHLPELTEEKFLQDPFVPGDRMYRTGDVVRWLPDGTIEYLGREDDQVKVRGYRIELGEIEAVIQQAPDVAKAVVLARPDEQGNLEVCAYVVQKPGSEFAPAGLREHAARQLPDYMVPAYFTEVTEIPLTPSGKVDRRKLFALEVKAVSGTAYTAPRNETEKAIAAIWQDVLNVEKAGIFDNFFETGGHSLKAMTLLTKIHKETGIEIPLQFLFEHPTITALAEEADHRESKAFAVIEPAEKQEHYPLSLAQQRTYIVSQFEDAGVGYNMPAAAILEGPLDIQKLERAFQGLIRRHESLRTSFVLENSTPRQKIHDSVDFNIEMIERGGRSDEAIMASFVRTFDLAKAPLFRIGLLGLEENRHMLLFDMHHLISDGVSIGIMLEELARIYKGEQLPDLRLQYKDYAVWQSRQAAEGYKKDQAYWKEVFAGELPVLQLLSDYPRPPVQSFEGDRVSIKLDAGVKDRLNRLAEQNGATLYMVMLSAYYTLLSKYTGQDDIIVGTPSAGRNHSDTEGIIGMFVNTLAIRSEVKQNETFTQLISRVRKRVLDAFSHQDYPFEWLVEDLNIPRDVSRHPLFDTMFSLQNATEGIPAVGDLSLSVQETNFKIAKFDLTVQARETDEGIEIDVDYSTKLFKQSTADRLLTHFARLLEDAAADPEKPISEYKLLSEEEAASQIQQFNPGRTPYPKDKTIVQLFEEQAANTPDHTALQYEGESLTYRELNERANRLARGILSLGAGEGRTAAVLCERSMDMIVSILAVLKSGSAYVPIDPEHPIQRMQHFFRDSGAKVLLTQRKLKALAEEAEFKGVIVLADEEESYHADARNLALPLDSAAMANLTYTSGTTGTPKGNIVTHANILRTVKETNYLSITEQDTILGLSNYVFDAFMFDMFGSLLNGAKLVLIPKETVLDMARLSRVIERENISILMITTALFHLLVDLNPACLSTLRKIMFGGERASVEHVRKALQTVGKGKLLHMYGPSESTVFATYHPVDELEEHTLSVPIGKPVSNTEVYILDRTGHVQPAGIAGELCVSGEGLVKGYYNRPELTEEKFVPHPFTSGERMYKTGDLARWLPNGDIEFIGRIDHQVKIRGQRIELGEIEHQLQTHDRVQESVVLAVDQGAGDKLLCAYYVGEGDISSQEMREHAAKDLPAYMVPAVFIQMDELPLTGNGKIDRRALPIPDANVSRGVSYVAPRNGTEQKVADIWAQVLQAEQVGAYDHFFDIGGHSLAGMKMLALVHQELGVELSLKDLFQSPTVEGLAQVIASAEKGTAASISPAEKQDTYPVSSPQKRMYVLQQLEDAQTSYNMPAVLRLTGELDVERLNSVMQQLMQRHEALRTTFEIKDGETVQRIWEEAECEIAYFEAPEEETERIVSEFIKPFKIDQLPLFRIGLIKHSDTEHVLLFDMHHIISDGASVGVLIEELSKLYDGETLEPLRIQYKDYAVWQQQFIQSELYKKQEEHWLKELDGELPVLTLPTDYSRPAVQTFEGDRIAFSLEAGKADALRRLAKETDSTLYMVLLASYSAFLSKISGQDDIIVGSPVAGRSQADVSRVIGMFVNTLALRTYPKGEKTFADYLNEVKETALSAFDAQDYPLEDLIGNVQVQRDTSRNPLFDAVFSMQNANIKDLTMKGIQLEPHPFERKTAKFDLTLTADETDGGLTFVLEYNTALFKQETIERWKQYWMELLDAVTGNPNQPLSSLSLVTETEKQALLEAWKGKALPVPTDKTVHQLFEETAQRHKDRPAVTYNGQSWTYGELNAKANRLARILMDCGISPDDRVGVLTKPSLEMSAAVLGVLKAGAAFVPIDPDYPDQRIEYILQDSGAKLLLKQEGISVPDSYTGDVILLDGSRTILSLPLDENDEENPETAVTAENLAYMIYTSGTTGQPKGVMVEHHALVNLCFWHHDAFSMTAEDRSAKYAGFGFDASIWEMFPTWTIGAELHVIEEAIRLDIVRLNDYFETNGVTITFLPTQLAEQFMELENTSLRVLLTGGDKLKRAVKKPYTLVNNYGPTENTVVATSAEIHPEEGSLSIGRAIANTRVYILGEGNQVQPEGVAGELCVAGRGLARGYLNREDETAKRFVADPFVPGERMYRTGDLVKWTGGGIEYIGRIDQQVKVRGYRIELSEIEVQLAQLSEVQDAAVTAVKDKGGNTAIAAYVTPESADIEALKSALKETLPDYMIPAFWVTLNELPVTANGKVDRKALPEPDIEAGSGEYKAPTTDMEELLAGIWQDVLGMSEVGVTDNFFSLGGDSIKGIQMASRLNQHGWKLEMKDLFQHPTIEELTQYVERAEGKQADQGPVEGEVILTPIQRWFFEKNFTNKHHWNQSVMLHAKKGFDPERVEKTLQALIEHHDALRMVYREGQEDVIQYNRGLEAASAQLEVIQIEGQAADYEDRIEREAERLQSSIDLQEGGLLKAGLFQAEDGDHLLLAIHHLVVDGVSWRILLEDFAAVYTQLEQGNEPVLPQKTHSFAEYAERLQDFANSKAFLKEKEYWRQLEEQAVAAKLPKDRESGDQRMKHTKTIEFSLTAEETEQLTTKVHEAYHTEMNDILLTAFGLAMKEWTGQDRVSVHLEGHGREEIIEDLTISRTVGWFTSMYPMVLDMKHADDLGYQLKQMKEDIRHVPNKGVGYGILRYLTAPEHKEDVAFSIQPDVSFNYLGQFDEMSDAGLFTRSELPSGQSLSPETEKPNALDVVGYIENGKLTMSLAYHSLEFHEKTVQTFSDSFKAHLLRIIEHCLSQDGTELTPSDLGDDDLTLDELDKLMEIF", "sequence_length": 3587, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "66e045cc2c62f7df9e3f2f8f0b6b40e9ff3389a53eb862bde1107f77f9647c83", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P27206.json", "taxon_id": "224308", "uniprot_accession": "P27206", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/condensation-pf00668.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF00668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/condensation-pf00668.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P40806", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00109", "PF00501", "PF00550", "PF00668", "PF02801", "PF08659", "PF13193", "PF14765", "PF21089", "PF22336" ], "protein_name": "Polyketide synthase PksJ", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "39057b8c490ac584fac926bed00b93a6127bb419aac50bf1c1d97299c48a2647", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRNNDNIRILTNPSVSHGEPLHISEKQPATIPEVLYRTATELGDTKGIIYLQPDGTEVYQSYRRLWDDGLRIAKGLRQSGLKAKQSVILQLGDNSQLLPAFWGCVLTGVVPAPLAVPPTYAESSSGTQKLKDAWTLLDKPAVITDRGMHQEMLDWAKEQGLEGFRAIIVEDLLSAEADTDWHQSSPEDLALLLLTSGSTGTPKAVMLNHRNIMSMVKGIIQMQGFTREDITFNWMPFDHVGGIGMLHLRDVYLGCQEINVSSETILMEPLKWLDWIDHYRASVTWAPNFAFGLVTDFAEEIKDKKWDLSSMRYMLNGGEAMVAKVGRRILELLEPHGLPADAIRPAWGMSETSSGVIFSHEFTRAGTSDDDHFVEIGSPIPGFSMRIVNDHNELVEEGEIGRFQVSGLSVTSGYYQRPDLNESVFTEDGWFETGDLGFLRNGRLTITGRTKDAIIINGINYYSHAIESAVEELPEIETSYTAACAVRLGQNSTDQLAIFFVTSAKLNDEQMSQLLRNIQSHVSQVIGVTPEYLLPVQKEEIPKTAIGKIQRTQLKTSFENGEFDHLLHKPNRMNDAVQDEGIQQADQVKRVREEIQKHLLTCLTEELHVSHDWVEPNANIQSLGVNSIKMMKLIRSIEKNYHIKLTAREIHQYPTIERLASYLSEHEDLSSLSADKKGTDTYKTEPERSQATFQPLSEVQKGLWTLQKMSPEKSAYHVPLCFKFSSGLHHETFQQAFGLVLNQHPILKHVIQEKDGVPFLKNEPALSIEIKTENISSLKESDIPAFLRKKVKEPYVKENSPLVRVMSFSRSEQEHFLLVVIHHLIFDGVSSVTFIRSLFDTYQLLLKGQQPEKAVSPAIYHDFAAWEKNMLAGKDGVKHRTYWQKQLSGTLPNLQLPNVSASSVDSQFREDTYTRRLSSGFMNQVRTFAKEHSVNVTTVFLSCYMMLLGRYTGQKEQIVGMPAMVRPEERFDDAIGHFLNMLPIRSELNPADTFSSFISKLQLTILDGLDHAAYPFPKMVRDLNIPRSQAGSPVFQTAFFYQNFLQSGSYQSLLSRYADFFSVDFVEYIHQEGEYELVFELWETEEKMELNIKYNTGLFDAASISAMFDHFVYVTEQAMLNPSQPLKEYSLLPEAEKQMILKTWNATGKTYPYITFHELFEQQAKKTPDRAAVSYEGQTLTYRELDEKSTQLAIYLQAHGVGPDRLAGIYVDRSLDMLVGLLAILKAGGAYVPLDPSYPAERLEYMLEDSEVFITLTTSELVNTLSWNGVTTALLDQDWDEIAQTASDRKVLTRTVTPENLAYVIYTSGSTGKPKGVMIPHKALTNFLVSMGETPGLTAEDKMLAVTTYCFDIAALELFLPLIKGAHCYICQTEHTKDVEKLKRDIRAIKPTVMQATPATWKMLFYSGWENEESVKILCGGEALPETLKRYFLDTGSEAWNMFGPTETTIWSAVQRINVECSHATIGRPIANTQIYITDSQLAPVPAGVPGELCIAGDGVAKGYYKKEELTDSRFIDNPFEPGSKLYRTGDMARWLTGGRIEYIGRIDNQVKIRGFRIELGDIESRLSEHPGILECVVVADMDNLAAYYTAKHANASLTARELRHFVKNALPAYMVPSYFIQLDHMPLTPNGKIDRNSLKNIDLSGEQLKQRQTSPKNIQDTVFTIWQEVLKTSDIEWDDGFFDVGGDSLLAVTVADRIKHELSCEFSVTDLFEYSTIKNISQYITEQRMGDASDHIPTDPAAHIEDQSTEMSDLPDYYDDSVAIIGISCEFPGAKNHDEFWENLRDGKESIAFFNKEELQRFGISKEIAENADYVPAKASIDGKDRFDPSFFQISPKDAEFMDPQLRMLLTHSWKAIEDAGYAARQIPQTSVFMSASNNSYRALLPSDTTESLETPDGYVSWVLAQSGTIPTMISHKLGLRGPSYFVHANCSSSLIGLHSAYKSLLSGESDYALVGGATLHTESNIGYVHQPGLNFSSDGHIKAFDASADGMIGGEGVAVVLLKKAADAVKDGDHIYALLRGIGVNNDGADKVGFYAPSVKGQADVVQQVMNQTKVQPESICYVEAHGTGTKLGDPIELAALTNVYRQYTNKTQFCGIGSVKTNIGHLDTAAGLAGCIKVVMSLYHQELAPSVNYKEPNPNTDLASSPFYVVDQKKTLSREIKTHRAALSSFGLGGTNTHAIFEQFKRDSDKGKIDGTCIVPISAKNKERLQEYAEDILAYLERRGFENSQLPDFAYTLQVGREAMEHRVVFIADHVNELKQRLTDFINGNTAIEGCFQGSKHNAREVSWLTEDEDSAELIRKWMAKGKVNKLAEMWSKGAHIDWMQLYKGERPNRMSLPTYPFAKERYWPSQDDRKPVAQISGNQTGIGSIHPLLHQNTSDFSEQKFSSVFTGDEFFLRDHVVRGKPVLPGVAYLEMAYAAINQAAGSEIGQDVRIRLNHTVWVQPVVVDRHSAQVDISLFPEEDGKITFDIYSTQEDGDDPVIHSQGSAELASAAETPVADLTEMSRRCGKGKMSPDQFYEEGRSRGMFHGPAFQGIKNVNIGNREVLAQLQLPEIVSGTNEQFVLHPSIMDSALQTATICIMQELTDQKLILPFALEELEVIKGCSSSMWAYARLSDSDHSGGVVQKADIDVIDESGTVCVRIKGFSTRVLEGEVHTSKPSTRHERLMLEPVWEKQNEEREDEDLSYTEHIIVLFETERSVTDSIASHMKDARVITLNEAVGHIAERYQCYMQNIFELLQSKVRKLSAGRIIIQAIVPLEKEKQLFAGVSGLFKTAEIEFSKLTAQVIEIEKPEEMIDLHLKLKDDSRRPFDKQIRYEAGYRFVKGWREMVLPSADTLHMPWRDEGVYLITGGAGSLGLLFAKEIANRTGRSTIVLTGRSVLSEDKENELEALRSIGAEVVYREADVSDQHAVRHLLEEIKERYGTLNGIIHGAGSSKDRFIIHKTNEEFQEVLQPKVSGLLHVDECSKDFPLDFFIFFSSVSGCLGNAGQADYAAANSFMDAFAEYRRSLAASKKRFGSTISFNWPLWEEGGMQVGAEDEKRMLKTTGMVPMPTDSGLKAFYQGIVSDKPQVFVMEGQLQKMKQKLLSAGSKAKRNDQRKADQDQGQTRKLEAALIQMVGAILKVNTDDIDVNTELSEYGFDSVTFTVFTNKINEKFQLELTPTIFFEYGSVQSLAEYVVAAYQGEWNQDATAKGKDERTNLVHSLSSLEASLSNMVSAILKVNSEDIDVNTELSEYGFDSVTFTVFTNKINEEFQLELTPTIFFEYGSLHSLAEYLTVEHGDTLVQEREKPEGQEELQTKSSEAPKITSRRKRRFTQPIIAKAERNKKQAADFEPVAIVGISGRFPGAMDIDEFWKNLEEGKDSITEVPKDRWDWREHYGNPDTDVNKTDIKWGGFIDGVAEFDPLFFGISPREADYVDPQQRLLMTYVWKALEDAGCSPQSLSGTGTGIFIGTGNTGYKDLFHRANLPIEGHAATGHMIPSVGPNRMSYFLNIHGPSEPVETACSSSLVAIHRAVTAMQNGDCEMAIAGGVNTILTEEAHISYSKAGMLSTDGRCKTFSADANGYVRGEGVGMVMLKKLEDAERDGNHIYGVIRGTAENHGGRANTLTSPNPKAQADLLVRAYRQADIDPSTVTYIEAHGTGTELGDPIEINGLKAAFKELSNMRGESQPDVPDHRCGIGSVKSNIGHLELAAGISGLIKVLLQMKHKTLVKSLHCETLNPYLQLTDSPFYIVQEKQEWKSVTDRDGNELPRRAGISSFGIGGVNAHIVIEEYMPKANSEHTATEQPNVIVLSAKNKSRLIDRASQLLEVIRNKKYTDQDLHRIAYTLQVGREEMDERLACVAGTMQELEEKLQAFVDGKEETDEFFRGQSHRNKETQTIFTADEDMALALDAWIRKRKYAKLADLWVKGVSIQWNTLYGETKPRLISLPSYPFAKDHYWVPAKEHSERDKKELVNAIEDRAACFLTKQWSLSPIGSAVPGTRTVAILCCQETADLAAEVSSYFPNHLLIDVSRIENDQSDIDWKEFDGLVDVIGCGWDDEGRLDWIEWVQRLVEFGHKEGLRLLCVTKGLESFQNTSVRMAGASRAGLYRMLQCEYSHLISRHMDAEEVTDHRRLAKLIADEFYSDSYDAEVCYRDGLRYQAFLKAHPETGKATEQSAVFPKDHVLLITGGTRGIGLLCARHFAECYGVKKLVLTGREQLPPREEWARFKTSNTSLAEKIQAVRELEAKGVQVEMLSLTLSDDAQVEQTLQHIKRTLGPIGGVIHCAGLTDMDTLAFIRKTSDDIQRVLEPKVSGLTTLYRHVCNEPLQFFVLFSSVSAIIPELSAGQADYAMANSYMDYFAEAHQKHAPIISVQWPNWKETGMGEVTNQAYRDSGLLSITNSEGLRFLDQIVSKKFGPVVLPAMANQTNWEPELLMKRRKPHEGGLQEAALQSPPARDIEEADEVSKCDGLLSETQSWLIDLFTEELRIDREDFEIDGLFQDYGVDSIILAQVLQRINRKLEAALDPSILYEYPTIQRFADWLIGSYSERLSALFGGRISDASAPLENKIEAEASVPGKDRALTPQIQAPAILSPDSHAEGIAVVGLSCRFPGAETLESYWSLLSEGRSSIGPIPAERWGCKTPYYAGVIDGVSYFDPDFFLLHEEDVRAMDPQALLVLEECLKLLYHAGYTPEEIKGKPVGVYIGGRSQHKPDEDSLDHAKNPIVTVGQNYLAANLSQFFDVRGPSVVVDTACSSALVGMNMAIQALRGGDIQSAIVGGVSLLSSDASHRLFDRRGILSKHSSFHVFDERADGVVLGEGVGMVMLKTVKQALEDGDIIYAVVKAASVNNDGRTAGPATPNLEAQKEVMKDALFKSGKKPEDISYLEANGSGSIVTDLLELKAIQSVYRSGHSSPLSLGSIKPNIGHPLCAEGIASFIKVVLMLKERRFVPFLSGEKEMAHFDQQKANITFSRALEKWTDSQPTAAINCFADGGTNAHVIVEAWEKDEKHAIKRSPISPPQLKKRMLSPGEPKLEAETSKMTAANIWDTYEVEV", "sequence_length": 5043, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "39057b8c490ac584fac926bed00b93a6127bb419aac50bf1c1d97299c48a2647", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P40806.json", "taxon_id": "224308", "uniprot_accession": "P40806", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/condensation-pf00668.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF00668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/condensation-pf00668.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF00975", "PF13193" ], "protein_name": "Surfactin synthase subunit 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQFSKDQVQDMYYLSPMQEGMLFHAILNPGQSFYLEQITMKVKGSLNIKCLEESMNVIMDRYDVFRTVFIHEKVKRPVQVVLKKRQFHIEEIDLTHLTGSEQTAKINEYKEQDKIRGFDLTRDIPMRAAIFKKAEESFEWVWSYHHIILDGWCFGIVVQDLFKVYNALREQKPYSLPPVKPYKDYIKWLEKQDKQASLRYWREYLEGFEGQTTFAEQRKKQKDGYEPKELLFSLSEAETKAFTELAKSQHTTLSTALQAVWSVLISRYQQSGDLAFGTVVSGRPAEIKGVEHMVGLFINVVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYDIQSQADQPKLIDHIIVFENYPLQDAKNEESSENGFDMVDVHVFEKSNYDLNLMASPGDEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDREREFLLTGLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEEWIGPRNEMEETIAQIWSEVLGRKQIGIHDDFFALGGHSLKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNGGSDGLQDVTIMNQDQEQIIFAFPPVLGYGLMYQNLSSRLPSYKLCAFDFIEEEDRLDRYADLIQKLQPEGPLTLFGYSAGCSLAFEAAKKLEEQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKHGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDMPEWLASWEEATTGVYRVKRGFGTHAEMLQGETLDRNAEILLEFLNTQTVTVS", "sequence_length": 1275, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fe31bdc41518f7c0f80f45f8856ec2b453fb1ebd34e04c578ce2f77c20552d56", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q08787.json", "taxon_id": "224308", "uniprot_accession": "Q08787", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)", "origins": [ { "cited_uniprot_accession": "Q4WAZ9", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/unclassified/azaspirene.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-a469ae857b", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/unclassified/azaspirene.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acp-sdga-c-pf23297.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acp-sdga-c-pf23297.yaml" } ], "pfam_ids": [ "PF00109", "PF00501", "PF00550", "PF00668", "PF00698", "PF02801", "PF07993", "PF08659", "PF14765", "PF21089", "PF22336", "PF23297" ], "protein_name": "PKS-NRPS hybrid synthetase psoA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVYTHSPKEPIAIIGTGCRFPGGSTSPSKLWDLLYSPRDLTREVPAESRFNPKGFYNVDGEHHGASNATNAYFIEEDPRYFDAGFFSIAPREAESIDPQQRLLLETVYEAMENAGLTLNGMRGSATSAYMGAMSADYTDTQLRDIENVSKYMITGTSRALLANRLSYFFDWKGPSISVDTACSSSLAAVHLGVQALRAGECTISCVGGSNIILNPDCYLAATSLHLLSPTGRSQMWDQAADGYARGEGVCVFFMKTLSQALRDGDRIDALLRETCVNSDGRTQGIALPSAEAQVSLMRTAYKNAGLDLSKAEDRPQYIEAHGTGTQAGDPREAYAIATTFFPPGEDHSHRPKLVVGSVKTIIGHTEGCAGIAGILKAVLAMRHKTIPPNQHFHNLNPSVKPSFKHLSIATSPQPWPVVPPDTPLRASVNGFGSGGTNCHAIVESYVPEIHDNGPWGKPKEMTQVPNGVAAPETDFSPIPLIFSASSGTALRAMLERYQEYLERTEVSLLRLAMTLNSHRSTLPVRVSIPGTSKADVLAAIRTQLAKVGSNPGAEIGTRSSVPEFDHVRRPKILGVFTGQGAQWAGMGQGLMAKSALFRQVIEVMEEAMAQLPDGPEWSLKEEIMKPPKTSRLGEAEISLPVCAALQVGLVKVLRSAGITFSMVVGHSGGEIGSAYAAGKISEVDAIKIAYYRGVYTKLAIGKDGKKGGMIAVGFGYEDGLNFCAMEQFADRLTVAASNSPKSVTLSGDLDAVHEAKELLDAEGVFNRVLRLDTAYHSPHMYPCAAPYLAAIERCGLVAGKSNGTAWASSVYDDNRMMTSAQDKDLEAAYWKDNLIGRVLFSQAVERALDEGNGDFDLALEIGPHPSLKGPTLETIRHKIGSEIPYSGVLDRKADDILALSTALGFSWLTLGSGVVDFAGYVSGFDPSNASILNAPALPDLPTYPWDHKKVLYRESRLNKNVRHRVDPPHPLLGSRTPDDTDYEPRWRNFLIMEELPWLRDHCVQGQIIVPAATYSVMALEAAKVLCRGKHVQSIELSDVAILRPIVLDEASDGTETLFSVRSDLDSNKKHEDEIHAQFTLSAGAMDDRHLRTAATGHIRITLAAEAPSSFPNGPRPTELDLLPTSVDRFYASMDEIGLSYSGPFRAMTSMKRRLNVASATVAVDRDLAGTIPVHPTWLDACFQTFLAAFAAPRDGSLWTAFMPTAIGRMVFSPSSTSQVPGRSVTVDAHITDFAPGYQVSLPTLTGDMSIFNSETNQLQIQIEDFVMSSFLPASEKDDRRFYLQNVWGQEMLSGALCAAAERCVAPTESESKIIDTCEKAVHYYLSKLKAAGLLDQWADKNPGLRSLMNEIEARVTSIPEQSDLVSMLGEVGEHIDLVLVRTIGESLLNSPSEGLGPITPSPMGALISRWHHEGLGFAQLQRHFVSAAKQISHQHANLRILQVGPSSPGLVRSVCQELGRSLERYTLVDDSEQTIEEMKSALAADQLRVDFTTASVENGIDAVNHLTSAGGFDLVIVHKAFTKQVTALKTVRNLLRPGGFMLMMAATGAQLRFPFMLMSTLPSLDDERLAQTKFINATRAETHDLLRQIGFSGVDSIALDNVPDKHTFSVVVSQALDDHIAFLRSPLTSPSPVPLSGNLLVVGGFSADIAKLATAIQSLVSTVWHGDIINVRTLAELDDEASTVEAVLSLTDLDRPVLEDVRAPTFRGLQRLFSEAKTVLWITHRAKADNPYHNATIGLGRSFQSENPQKVLQFLDVDTLDGVESAIAETFLKLIGGVNMRNSNPADPTRLWTIEPEVSLENGKYLVPRLFPDTERNDRLNALRRKVQTQVSVETQPISLSRSAQSDQVAYTAEAVHFHRDLADGATDPVTIQVELCSTEPVIPNIDNEDLFCFVGRTSEGARLVGLSTSNSSVVKVPREWTIPVDKHTSHDQGAFVLELRNEIQSLVIAKSIPPGSTTLIYEPDPHLAASLQRPGRPATSSVSFRARSTWSIPGSHILIDPHASRKDIQAKVPPKTRMLIHMEQGPETCEFLALRQALPPYATVVAFNDLAADDVNPRELLAEALSIIRGDSQSTKVPFDPSSVVKASALVAGGTREHANAAVVDWTGAQSITLSPRPVDTRNLFSPNKTYLLVGLTGHIGQSICRWMVQGGARHIVVTSRHPEKQGQLWREELLRQGVNIVIEAADVTKEHDLLDLRARIVSSMPPVGGIANGAMVLDDKLFIDMPFESFQAAMKPKVQGSIYLEEVFSADNLDFFLFFSSISVMTGQRTQANYVAANNFMVAMAERRRARGLPASVIDIGMVVGIGVIQRSQNDKGVSAMENSIRQMDYMPVSETDLHHLLAEAILVGQRDESPELITGLETYKPVEGEAPFWHHNVRFSHLITDPDAAQAGADSAGSAQKSLKEMLLSSGGPEEARKVMENALLQYLASSLKLSRETIYTDVPIIDLGIDSLVAVQIRNWTWAEAGYDLPVLKILGGSSVTQICDEVVASLSFDKSSIAAAKVDSQAAPAHKLRPWDKPSADTKRTDSIAPVPRSQIAANGPNGLPNGALKKASKLAVKVRPLWTTQAGGKDTKKGPRPAPIRIQPLSLGQSRLYFLSQYMDDDRVLNCTISYALSGKLDVSKLEQSLIQVVQRHEALRTSFYTDEKDGKPMQGLLEKSPFRLRVVPGVSASSDVETEFNLIRYRPYDLEQADTFAATLLSHSPDSHTLICGYHHIIMDGVSWQIFQKDLAMFYNNSGIADSAKHLPAQYSEFTRKQQEDLSCGAYAERLRFFQDQFREPVESLPLFPFAKVGTRKVVKQYAVQEATTHLNAKVVSAIKQASQTSRTTPFHFYLSAFQVLLHRLLETDKMCIGVVDANRSDQNFVNTIGFFLETIPLWFKVNSEQRFVELLKETRTKAYAALAQTGVPTEEILRACGVASSTTETPLFQVCFNYRMGAGRTAALQGVEMKFLDYVDAQNPFDLVATVDDLDDGTAMITLYLQDYLYDQEGAQLLATMYANVLQVLAENPERLVGSVSISNATLEDEGVKLGTGPILDLVAPSTPTLSKIFHTWVDKDPHALAVKDTTGKSKTYVQLAERANAIAASLLNAGAAPSIPIGVLLDPGVDTIATILAILRIGAAYVPLDTRSSDAVLSDILQESQPGIVIHHSATAPRSQILLKASAKTKLVTLNAVPQKTIRKIQDVSVPEGLAMILYTSGSTGSPKGIPLTNANIRTPILGVSERVPLGREVVLQQSGQGFDAAVYQIFIALANGGTLIMVDNRDDPAKVAALMAQESVTCTTHIVSEMQALLKYGYDELRNCSSWRIAMVAGEAFTVHLLDQFRALNRPDLKVINAYGPTEASICSSLGEVSFNRISSSETSIPIGKAIPNYGTYIVDQHCKPVPLGWPGEVAIAGPGVASGYLNLGELTQAKFRSAATLGEVFGSDCLYLTGDRGRMLSDGSIVLSGRVDGDDQVKIRGHRVQLGDVARALVQASRGVFADAAVILKGDDTSNPQLVAYVVFSRTSNIQDQQTYLRQLNQDLPVPAYMRPAITIPLDTLPVTDRGKLDSKKLASLPLPSISVDYEEDEQLTPTEARLRDVWKNVLGDIASSIPIRRSSDFFSVGGNSLILLALKAEIAQVFGVGLSVSELFQASTLELLAARLDGTSLLAQINWEEETAPDETQFTLPPPINGINGHGSSNGHAQGISVLLTGATGFLGGHILRQLVQLPSVEHVHCVAIRPNKVDVRRQLSVESPKIIRYSGDLALPNMGMSESEFSDLFKSIDVIVHNGAEVSHMKNYRSLRAANFLSTVGLARAAVSRGIPIHYISTGGVARLSVADEQPEASLAAFHPPIDGSDGYVASKWASEVFLEKVQRRFQGQVWIHRPSSITGDDVPDNDIAHSLLKFSRELGAVPELTGSGFFDFINVETVSNNIAASVVRSSEKSGGGLIYLHQSGEQVIPVGDLQKYVEELEGRPLQVLPLKEWVDLSIRKGLDEVLGSYMLASKGVIRAPLLQRGPHVE", "sequence_length": 4007, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "003f280ec0c4089b18296dddb698e0da4e8a0f546678f6f335915fc804691e35", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q4WAZ9.json", "taxon_id": "330879", "uniprot_accession": "Q4WAZ9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)", "origins": [ { "cited_uniprot_accession": "Q5B7I4", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/fellutamide-b.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-a7c02b2a6d", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/fellutamide-b.yaml" }, { "cited_uniprot_accession": "Q5B7I4", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/polyketides/asperfuranone.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-3358de9614", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/polyketides/asperfuranone.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668" ], "protein_name": "Nonribosomal peptide synthetase inpB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGAIESSPSEWLQLELRRICANVLQLDTKDVDPQRSFLSLGGDSLLAIKILAQCRAQGITINIADIMAATTLESLYSMAQGPAELASSSTSDNASDKDSSLDDSETGALTPTTDAGSSLADTLSPEMKAKLSALSVSQDTAIQAVVPCSAIQDRMLVSQLQNPHLYSCCFVLRLTHSHPGLPVDAKRLGTAWGEVVKRHSSLRTVLVESTQRPGHYNQVILAGIIPAVEHYEGADHLGSVKFNVNNPIVFQPHSIPHRLQLVQVSPSEVYLKFDISHLLIDGQSAEVLLKDLSDAYRDGGLAAAPLSYADYVSSYLLEPAQLNTSRKESGMEMSPLTVPMDRPNEGLFDFQTVSANVPLDSRLVQSVCARYSVTLATVCQLAWGLVLRCYAGTDSVCFSYVNSGRSMSIPGVQEVIGPIVQTSMCSIQLGPADELPKILQRIHRDALQAMSQLSPLEANSTSKSARQLSNTTMSFQRALDDAAAQRAGLLVKIEGKANPTDYDISLGIAAGADGLSVDLDFWGSRLDEESARTMLGAFEAAIRGIIDSPDSTVSNISLLSPGEVSQLAQWNASIPKPERVCVHDKIMEISKLQPGAAAVNSWDGNLTYHDLTVQASTLAHHLRDQLGVGPERFVGICMDKSKWAIVSMLAVLMAGGIVVPLGVSHPRARIRELLNDTAAVALLVDGKHGDRLAGLEVENAAMLTVDQQLLDSLPTIPKPPVSGVTPDNAAWVIYTSGSTGVPKGVVLLHQNISTSVIAHGAVFGVNCVTRTAQFASYTFDVSLSDIVMTLFHGGCVCIFSEESRMNSLTEALQGLAVNYVNLTPTVLGLLNPADLPVIRTVVAGGEAMDPGIIEKWSPHARVFNSVGPSECTIIAVAAGPVTDPAQAANVGYPTGTRLWVALPTDPNQLCPVGVPGELLIEGPMLSRGYLNDPEKTAGAFITNPAFVKHLEAATPAWKVLFQKSERRFYRSGDLVRQKRDGSLVHMGRRDTQVKIRGQRVEIGEIEYWIMQRLKEVRRVAVLVIERGQGKEQKSLVAAVEFKEDYEDVRHSDDDISPVTKIGESTVLPQLLPLTEPLSKALHQLRNDLLEHLPPYMSPTMYAPVSQLPLNLSGKIDRRAVTQFINELDDVQLQQYLAVSGSHQEPSTETEFKLQKLWAKTLGVDVSQISADSHFFHIGGDSVAAMRVVAAARDVELVLRVADLFEYPRLPDLARAVESRVVDEADEEDPAPFSVWRESRGSEPSEEPVELDKIAAMCNLSKEQIEDVLPCTALQEGLIALTAQQPTAYIDRRVFALSQEVDLSQYRAAWQIVIHRTSALRTRIVSGPQTGSLQVVVVPRHIDWNKSSSLDEYLETDRQTGMMMGQPLNRFAFVDQPDGQRFFVWTTHHSTYDGWSRALVLQQVADAYASRDLPPIASFSRFIQYIHSQPQDAAASYWKAQLGGDTSADFPALPIANYRPRPQQRHQHTVNLASSSTKVMLPDLLRGAWALVVHQYVGKTDPVFAIALSGRNAPVRNVPNIAGPTLTTVPVRIFIDPEQLVNEFLQSVRQQAVDMIPYEHTGLQRIKKMVPELAAAVDLKHLFVVQPASDGESKFKIPGVTEHLVAVDEFDSYGLNVECMLSGQSIEVDVRFDEKMLSSSQVIRLMSQFEAVVHQLHLHGEGSLKIKDIDLLSPEDVNQLRQWNALPLAQPLDVCLHDLIAEVARSRPGAAAIEAWDGTLTHAQLQSYASTLAGYLIELGVGPEISVPVCMDKSVWAVVCFLAVLQAGGVVVPLGTGHPIPHIASIIEDTGAKLVLVDAQQFERLLELTPSRGLTLVPIDTQLLNSLPTAAPQTSVTPANAAWIVFTSGSTGKAKGVVLTHSNLSTAIKTHGARFGLGTHTRTIQFAAHTFDAVLQDYFTTLASGGTVCVPSEADRMNDLAGVMRGMNVNFANLTSTVARLLTPDQVPSLKVLILAGEQIQDSVVETWYKHAEVLNVYGPTECSINSTCNGPISDLSNAQSIGFGMGSRTWIADPTDPNRLCPVGTPGELLIEGPGLARGYLGDPAKTEAAIIQNPSFASRFALSDCRVYRTGDLAKQTEDGQILYLGRIDTQIKIRGQRVELGEIEHWIGRHLPHVKHTAVVAISRGEKQMRLAAVIERENGHKPDPVIFTQLKKTLSSLLPSYMVPSLYIPVTEIPLTVSGKLDRRAIKQTVESMPTEELEQYFAGESSGTRVPPSTEMEKALQRIWANSLGIEVDAIGADDNFFQLGGDSVVAMHISASSRQDQSVKGLAVGDIFMHPRLADLAVLLEKRPREGEGGWDEEMRDDESPFALLQEVLDLDLKDI", "sequence_length": 2326, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "86e65c01d249fbf2d57445880dff2ad3809a6e9278ae9590b7b2f0ed1e0986ee", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5B7I4.json", "taxon_id": "227321", "uniprot_accession": "Q5B7I4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)", "origins": [ { "cited_uniprot_accession": "Q5B7I5", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/fellutamide-b.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-a7c02b2a6d", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/fellutamide-b.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF07993" ], "protein_name": "Nonribosomal peptide synthetase inpA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSHSMSSSSSSSSSSSSSRDEGQSRLNNVLSNIAKQCRTTSAQVQDVYPCTPLQQGLFALSLTSPGAYMAQHVFRLQPFVDQGRMKQAWNVVLQKHAILRTRIVMLGENAMQVVLKQSPEWRNCSDLRAYLDADQSITLQTGEPLTRWAISDTHLVWSAHHSVYDGFSVELILRDVATAYADGEIPPRPSFRQFIQRMFQQKQKSLTEAYWKKKTAHLDEVDTFPRLPASTYRPRPNSVYKHESSLAIDGPSGVTLSTIANAAWGLVQSSHLGSEQVSFGTTLSGRNANMPDIDKVVGPTLATVPVLLDVRSSQSVADFLQATQAYFTELIPHQHIGLQNLRRLNRATEAVCNFQTLFAFQPGMTETQGQSPYGHLLTAENKDKVEAAFYSYALTFQCSLAGTGIIKVLASYDDKIISSSQMKRLVFQFEHIVSQLISSNGSKRLSEIQLISPQDLDQLDIWKRKMESYEQLLPLDAIQRHIDTRPDATAVAAWDGTLSYVELDAFATRLATWLVHEQKVGPEIVIPICFDRSQWMIVSIFGVLKAGGAFLLLDPIYPENRLRYMIKMVNARTILVSESCRARFEGVPGAILAVNAAWFETHTHASIPMRELPVDRALYLVFTSGSTGQPKGVIVTHASYAASAAGHMPALGMNENTRQLFFASPAFDLSIYEILGSLMCGGTVCVPTEEDRNGSVAPVIRDMNVNLISLTSSYARHLRPEDVPRLETLALVGEPLARDVQRVWANRLTLINAYGPAECSVVSTVKRPVTLDSNPANIGTTVAGRAWVVHPKDHEILLPIGATGELLLEGDHLARGYLNDEEKTAAAYIFGPYWAPSPTPRRFYKTGDLVHFDEDGSIVFEGRKDSQVKIRGQRVEIAEIEHHLARLFPNAAGAAVDVFKHEYHVHLVAFLFCDKESWNSSDTPADILQRLGDVNVSTMSHIKQQLEQVMPHHMVPTRYQIWARMPTSLAGKLDRKALRKELGNQSTTVIELDETSTEFPVIDSTNKVALRLNHKILDLASEEKTTLDGRDFPLSILGLDSIQLITIVTFIRSEYGAKMTVETLYDLKLTVTGLAAMITSPHDRPAEAAPTLDLSKELQRVYRELTRRSESIKHKRKVFLTGATGLLGSQILRQLLADPSVQRVIVHVRANDAAKGMARVVSAATLAKWWSSSYANRVECWPGDLGMPQLGLQPEQWRMLCGTADAGAPITSVIHNGAAVQWQAPYQALKAVNVDSTVELLTAMAQWSEPGSFTFVSGGLKRSPGQDLESFMKSLEQANGYSQSKFVAEELVSRFAGHQSTHRVSIVRPGWVIGTEKDAVPNTDDFLWKLVQACIQIGAYPAEGGDLWLAVADAEEVATRILATTFAASGESPSVDNVEIGTTVSRFWELIKVQTGMELTQMSAEDWKQAAQDFAASQESEQTFLPVLAMLQDPQMEFGVQRPANGGPPSNVNAAIRSNIKTLVETGFLSDSSEVVIVED", "sequence_length": 1480, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "595679e13aee5ce407286bcd1e8a161ca59b61770cdb48df979d04cbf9f13141", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5B7I5.json", "taxon_id": "227321", "uniprot_accession": "Q5B7I5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Agrobacterium tumefaciens", "origins": [ { "cited_uniprot_accession": "Q83VM5", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/agrobactin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-bb581c6679", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/agrobactin.yaml" } ], "pfam_ids": [ "PF00668" ], "protein_name": "Probable non-ribosomal peptide synthase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MDAEKLAVAVESLCRRHPMLSLRIDAEGRQSVDPVGRPLRLDVEDMTALDSEALARRLETKREEWSHRGADLRAAAPAAISLSLLPEGRCRLHVDTDMLAIDPASVRIVMEDLARFYETAAGVDETLTFESVPPSFFDWAERLASDPDLRGRREKDRLWWRQRLADVPDAPPLPFLPDDPSRAVHTDRLATMLSAAERGSLEQTARRCSVTPSTLLLGVFAVALSQAAGAEKFRLSVPGFWRAPLVEGVDEIVGEFSNVLVLGVEIRPEESVEALLGRLFDEMNGLLAHQSYPGVSVMRDLSRLRGGLQTSPVVFTAGVDLPGGELFSERVGRVFGPMVHTVSQGPGVALDAQVAALDGGLLINWDVRLDALPESWLRALFETYVALLRRLAESPDLTSASVERLVARQPEAAAEAKGKPMERPLSPLQQAYLLGRGTHLPLSGVAMQEFREYRGNIDPELLQSRLAAMVGRHESLRTRIDERRLVQIVSDEPKINLDRVDLSALICSGSRGKGRGGATGFFPCTFRSRSLAMADHDLPYAGYRDGGA", "sequence_length": 548, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f87bce1591e8a10882c517ed47684adc29526b82c1fd1d45eeaf7f2a3984d63b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q83VM5.json", "taxon_id": "358", "uniprot_accession": "Q83VM5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Stigmatella aurantiaca", "origins": [ { "cited_uniprot_accession": "Q9F636", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/myxochelin-a.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-b9324089ad", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/myxochelin-a.yaml" }, { "cited_uniprot_accession": "Q9F636", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/myxochelin-b.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:7061", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/myxochelin-b.yaml" }, { "cited_uniprot_accession": "Q9F636", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/myxochelin-a-and-b-biosynthesis.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY-8383", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/myxochelin-a-and-b-biosynthesis.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF07993", "PF13193" ], "protein_name": "MxcG", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MRDSQETRRPLSAAQHGIWLGQQFDLKSPVYNAGECIEICGPVDPALFEAAVRQAVREAEALHVRFVASEEGPQQLLGLQTDWVLHTADLSESPDPWAAVQAWMKADLAQTVDLSRGPLFTEALFKAAPDRFFWYQRIHHIAMDGFGFSLLARRVAEVYTALAAGRPITGGFGSFQAVLDEDVAYRNGPQHELDRTFWTERFADRPTPVSLASPAPMSPSFVRQTRFLPAQSMERLQAVSRPAGLNWPDLVLAATAVYLHRLTDATEVVLGLPVMTRLGSAALRVPCMAMNIVPLRVPVSPEASLLDLARGIAAEVRAMRPHLRYRYEQLRRDLKLVGGQRRLFGPVVNIMPFDYALRFAGMPTIAHNISAGPVEDLSIGLYARADGKGLRVDFDANPACYEAKALESHPSAFLELLEALTAAPDQAVGRDSGSLSSSSSKAPSLASVLDGGPLPVAAQPVLQLIAERALEQPDAIAVEHGQHQMSYRELLQSAQALSAQLISAGVQPNTAVAVMLPRGLDAIVASLGVLFSGAGYLPLDPYGPSSRTAAILEDAKPALIIQRSTPDADPLSRGNLVIRQNEQAPAAAPSSRTLPQTSGEHLAYVIYTSGSTGQPNGVQISHEALAHFVAGATHRYGVRRDDRVLQFAPLHFDASVEEIFLTLCAGAKLVLRTEEMLQSVSRLLDACAEHGITVLDLPTAFWHELAYSVSTGAARLPSSIRLVIIGGEAALPERVARWRSAVSPEVLLLNTYGPTEATVVATTATLSGPAPAGTPEEEIPIGRPLPGVRAALIDAQGKLAAPGAEGELYLLGGGLARGYLGRPELNTARFTTLGMLSDRPRAYRTGDKARVREDGQLVFVGRVDDEFKISGHRIDPTEIETVLLSHSGVREAAVVGQILPGGTRRLCAHIVAEMPVPATAELRRHLLSELPAAMVPSAFVFAEKLPRTSTGKLDRNALRLVQPPEEATPTATTTPFERMVLQVWEQVLGLSRITAQDDFFELGGQSLQTIQVANRLSVALGRDVPVATVFRYPTAAGLAQALEHGEQHSVEGEGISKAMLADAELPEEIVPRLPTPGAEAPLAPSPGPAAPLRQVLLTGATGFVGAHLLDQLLRQTQAKVVCLVRARDEAHAMERLREAMTSQRLSTASLSERVLALPADLGQPWLGLSSARFHGLAAECDMILHNAAVVSVVREYGSLQATNVRGTRELLRLAASVRPKPLHYVSTLAVAPQANLSPEVPEAFVPAHPGLRDGYQQSKWAAERLVEQASERGLPVTVYRLGRVSGALDSGIVNPQDLVWRILLAGIPAGALPQLDVGEVWTPVDYVARALVRLSLVPRPGTVFNLTPAPEVRLSEVFGWVQDYGYPVALCPVPEWRTRVAQSTGSAENSTTLAFFDLRAGAAEPTFGLGTIRSERVLQALSDTGISCPRTDRPLLHRYLDYCVGQGLLQRPPEHR", "sequence_length": 1456, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b10b236ebf5e6a86b5674226d6ee00df1c1f9e26da3102f423693e7d048f9b34", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9F636.json", "taxon_id": "41", "uniprot_accession": "Q9F636", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae", "origins": [ { "cited_uniprot_accession": "Q9FDB0", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/vibriobactin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:9973", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/vibriobactin.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF13193" ], "protein_name": "Non-ribosomal peptide synthetase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MKEMTAMQAAYWLGRQHDCLLDGVAAHLYAEFDGQALNRQALTEAVRALYAKHPMLRLAITKDGQQKILPLSTFHQLKVDDLSQWKPDEVESFVHTKRQRMTHQMLDLTQGNPIEISLTLLPEGKHRLHIDADMIACDAQSFRLLVDDLTSLYLEAIEHRLEIIESDVVTFFQYLDAQQADRALAKRKEVDKKWWQERLATIPAEPSLPYQPVPTDAVSANSQRFAHWFTPVERKGLAEVARQHHLTLTQLTLALFSQVIANACQERQFRLNVPTFHRGNRSLDIEHTIGDFSNLLIFSADVGTTQTLLSLCQQTANQLHQLLRHESYSGVSVMRDLSRKQGGVQRSPIVFTSGMEMRDEEIFSDHVTQHLGRMNWVISQGAQVTLDAQIAPAYEGILLNWDVRMENFADKDITALFAHYVDLIRCVALHPEMMQQSVQQIDAQLGYARRESIQEMPLTPLQQAYLLGRSTQIALGGVAMHEFREYRGHIDTQSLHSRLLYLVEHIPALRTRIDQEKWIQWVSPCIALNWQAIDLQHLSREQALLAVEPVRQQYQQRMHDLTRSPWQICVVQLPIEEQEEFSSIVLTSFDALIVDGRTHALILAALLGSEEPDITQVVQNARDTQSISPQFASKKAQDEAYWKSKLHPDCPPPALPWKQALETITTSRYARESLQIPKESVGKLNRCGIENGLFLNSLLTATILDVLSYWTTEIGMRVGFPVLIPSSNAIDGNESSFVILEHEKSTLSLLSQASKLQREMLEALEHLAFSGVDLNRLLMNQAPQALVLPVVLTNGLSWKTLNPEDAVTLFDGVTQTPQVALDIRLTYDEQKNLIISFDYALAVLETELIREMLSALHHRLSQITSSASLAAPLEPCIDLSHYRFNSDESASHDCDFLAKLAQQLFVRTEDKTAVICGEQTLSYAQLGEQVQRVMWQLKARGLTTGNVLAICLPRSVEHIVISLASALSGIIWVPIDAASPKERLNYLLENCHADLVVMDKPCEFGNVIAFDALIEPVLFADGVPDVTPLDQLSRLSQSQQTAYYLYTSGTTGKPKCVVVNNQATSNVIGQTGQAWHLTSEDVVMSVTPLHHDMSVFDLFATLSFGATLVLPAGHEEKDALQWNRLIERHQVTIWVSVPAILEMLLSCTQAGQLHSLRLIAQGGDYIKPATIAQLRAGSNPPRLISLGGPTETTIWSIWHELTADDVSVIPYGRPLAGNRYFIMDEIQRHVPQGVVGRIFTSGVNLAQGYLEDGELKQTDFVTVLDEHGHPVRAFRTGDQGYYRADGNIIFASRINGYVKVRGVRVSLPDIEKQLQTHPALASVVVVDYADTNGDTALAALFSVKPQQSASSQALREFAKQSLPSSHIPSRFIALEALPLSANGKVDRKQCQAHVQRQSISVEPVGQPNQSQPLSPPTLSSASLSEFEQRVWRQHQRHGDGRNQYATAYRLSGKVNIARLITALSQLPNHFPVLNRRYVLDEASGLTLYSAKPTPLEIHFEHVESMDEAFEHLVRWQNQPMDLAKQATLSFCLLSLGSEERVLGVISHQIISEQWDWRRVFECVTNGYNQIACDIDPVMEGEDLSLGFTPVMPQTPLSQALLPWLQPASHATWIEQSLPSANSAINTLCSRKYRIALHSSVLAEHGLAQPDKQEVLALIAALFARYLAASAKLGQFELYVPHDVERKTRELNGSMIESQLVHIALKGFERPLSQLSQEILDAMRQPLTGGVASETHASAAALVTWLVDPSVHLQLEGLRCEKLLFAAMHPKFEVALGVGLNCQGALVLELALDATVSPHVGAYLLEQFVAAIGGRTMPSSTTSSSHVSAIELTSNNPPTSNNAHAALAESELELSAVNSSAVEECILAEFRSALGVAEMTAEDDFFDFGGHSLIATRVIGRLLSEQGIELHINDMFSFPNAKQLAQQAVLHRKPTSTSFAVSEVVESSKAPLSLAQASLWKAMSKYAKFGLTHIFNLPFALKFLDEVNEQAFGEAFHWLLLRHAGLRTHFGLEDGQPYQHVIAASNIEHYQWFWTSKDNAAQSVARLLAQEAEHTFDLSQELPLRLNFVRDEQTGTQYLSLLFHHIVLDEWSINILMDELAQVYQHSVQGTRPQWQTEPLPFHEFARKQRSSAFNQTHLNYWLTKFAGVPWAQPLFAADHPLSNSTGVDLGEGGWVEIKLPKSTMVSLYQLAKARHASLFNVMYAAISASVHCLGAPEKLLVGTPASGRLDAEFFDTVGYFTTMGVQLVDFTKVQTVWQLIEQVKNSINQSMPYTDIPIDLIEEGLKGVEHETEGHMFEVFIQLHAKNKLHGELLLTEGHAIRFQQVDPDKSESGLGLQFEILEERIEQKQTLRVMMSYMSKHYSPAQVALLTKVTSGMFERFSDCIAQDIALPTLKKQVRQLEDEACRSPSMG", "sequence_length": 2413, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "da75484dbe8662525e2ebe9e955cab175eb7844695a85629a88ff8adb7b68a80", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FDB0.json", "taxon_id": "666", "uniprot_accession": "Q9FDB0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae", "origins": [ { "cited_uniprot_accession": "Q9FDB1", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/vibriobactin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:9973", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/vibriobactin.yaml" } ], "pfam_ids": [ "PF00668" ], "protein_name": "Amide synthase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MLLAQKPFWQRHLAYPHINLDTVAHSLRLTGPLDTTLLLRALHLTVSEIDLFRARFSAQGELYWHPFSPPIDYQDLSIHLEAEPLAWRQIEQDLQRSSTLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSLLSGQTPTAAFKPYQSYLEEEAAYLTSHRYWQDKQFWQGYLREAPDLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLKLANANQIGWPDALVALCALYLESAEPDAPWLWLPFMNRWGSVAANVPGLMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELKVLASGSAEGINFTFRGSPQHELCLDITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLLAEPAALAATTSTRAIAS", "sequence_length": 436, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "031c458e6bd71791596fad47393bcb053ed0e7d27e0e3ad9f903280a7800e9ff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FDB1.json", "taxon_id": "666", "uniprot_accession": "Q9FDB1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "Q9HWG4", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/pyochelin-biosynthesis.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042864", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/pyochelin-biosynthesis.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF08242", "PF18563" ], "protein_name": "Pyochelin synthetase PchF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLGELLETCRSRRIELWSEAGRLRYRAPQGALDAGLAERLRAEREALLEHLEGGPGWRAEPDMAHQRFPLTPVQAAYVLGRQAAFDYGGNACQLYAEYDWPADTDPARLEAAWNAMVERHPMLRAVIEDNAWQRVLPEVPWQRLTVHACAGLDEAAFQAHLERVRERLDHACAALDQWPVLRPELSIGRDACVLHCSVDFTLVDYASLQLLLGEWRRRYLDPQWTAEPLEATFRDYVGVEQRRRQSPAWQRDRDWWLARLDALPGRPDLPLRVQPDTRSTRFRHFHARLDEAAWQALGARAGEHGLSAAGVALAAFAETIGRWSQAPAFCLNLTVLNRPPLHPQLAQVLGDFTALSLLAVDSRHGDSFVERARRIGEQMFDDLDHPTFSGVDLLRELARRRGRGADLMPVVFTSGIGSVQRLLGDGEAPRAPRYMISQTPQVWLDCQVTDQFGGLEIGWDVRLGLFPEGQAEAMFDDFVGLLRRLAQSPRAWTDGDATEPVEAPPQALPGSARSIAAGFAERALLTPDATAIHDAAGSYSYRQVAQHASALRRVLEAHGAGRGRRVAVMLPKSAAQLVAVIGILQAGAAYVPVDIRQPPLRRQAILASAEVVALVCLESDVPDVGCACVAIDRLAADSAWPPPPAAEVAADDLAYVIYTSGSTGTPKGVMLSHAAVSNTLLDINQRYGVDANDRVLGLAELSFDLSVYDFFGATAAGAQVVLPDPARGSDPSHWAELLERHAITLWNSVPAQGQMLIDYLESEPQRHLPGPRCVLWSGDWIPVSLPTRWWRRWPDSALFSLGGATEAAIWSIEQPIRPQHTELASIPYGRALRGQSVEVLDARGRRCPPGVRGEIHIGGVGLALGYAGDPQRTAERFVRHPDGRRLYRTGDLGRYLADGSIEFLGREDDQVKIRGHRIELAELDAALCAHPQVNLAATVVLGETHERSLASFVTLHAPVEAGEDPRTALDAVRQRAAQALRRDWGSEEGIAAAVAALDRACLASLAAWLAGSGLFASATPLDLATLCQRLGIAEARQRLLRHWLRQLEEGGYLRAEGEGWLGCAERPAQSPEDAWTAFAGCAPAALWPAELVAYLRDSAQSLGEQLAGRISPAALMFPQGSARIAEAMYSQGLHAQALHEAMAEAIAAIVERQPQRRWRLLELGAGTAAASRTVIARLAPLVQRGAEVDYLFTDVSSYFLAAARERFADQPWVRFGRFDMNGDLLDQGVAPHSVDILLSSGALNNALDTPALLAGLRELLSADAWLVIQELTREHNEISVSQSLMMENPRDLRDERRQLFVHTGQWLEWLAAQGGDLACGVVPPGSALDLLGYDVLLARCKTDRARLEPAELLAFVEARVPRYMLPAQLRVLERLPVTGNGKIDRKALTGFARQPQADLRHGVAQAPADELENALLALWREVLDNPSLGVEQDFFGAGGDSLLIAQLIARLRERLESARRHPFDRLLRWALSQPTPRGLAERLRSAPEEGRGPALAAARGVAPAPAGMSRAPLAEGAVALDPLVRLVPGEGVPRVLVHEGLGTLLPYRPLLRALGEGRPLLGLAVHDSDAYLAIPAEHLNACLGRRYAEALHRAGLREVDLLGYCSGGLVALETAKSLVQRGVRVRQLDIVSSYRIPYRVDDERLLLFSFAATLGLDTAALGFPAPERLGQAVQAALAQTPERLVAEALAGLPGLADLVALRGRVLQAASGSADAVSVERDTLYRLFCHSVRASQAEAPEPYVGALRLFVPDAGNPLVPRYAEALETQWRAAALGACGIHEVPGGHFDCLGEALAQSLSKPMPEEASR", "sequence_length": 1809, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d31b4d6c053a7a9a72a26a81cb4710612fb634ef7127d9a2c4590dc279bcb79f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HWG4.json", "taxon_id": "208964", "uniprot_accession": "Q9HWG4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sorangium cellulosum", "origins": [ { "cited_uniprot_accession": "Q9KIZ9", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/unclassified/epothilone-b.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:31550", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/unclassified/epothilone-b.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF00881", "PF18563" ], "protein_name": "EpoB", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MTINQLLNELEHQGVKLAADGERLQIQAPKNALNPNLLARISEHKSTILTMLRQRLPAESIVPAPAERHVPFPLTDIQGSYWLGRTGAFTVPSGIHAYREYDCTDLDVARLSRAFRKVVARHDMLRAHTLPDMMQVIEPKVDADIEIIDLRGLDRSTREARLVSLRDAMSHRIYDTERPPLYHVVAVRLDEQQTRLVLSIDLINVDLGSLSIIFKDWLSFYEDPETSLPVLELSYRDYVLALESRKKSEAHQRSMDYWKRRVAELPPPPMLPMKADPSTLREIRFRHTEQWLPSDSWSRLKQRVGERGLTPTGVILAAFSEVIGRWSASPRFTLNITLFNRLPVHPRVNDITGDFTSMVLLDIDTTRDKSFEQRAKRIQEQLWEAMDHCDVSGIEVQREAARVLGIQRGALFPVVLTSALNQQVVGVTSLQRLGTPVYTSTQTPQLLLDHQLYEHDGDLVLAWDIVDGVFPPDLLDDMLEAYVAFLRRLTEEPWSEQMRCSLPPAQLEARASANETNSLLSEHTLHGLFAARVEQLPMQLAVVSARKTLTYEELSRRSRRLGARLREQGARPNTLVAVVMEKGWEQVVAVLAVLESGAAYVPIDADLPAERIHYLLDHGEVKLVLTQPWLDGKLSWPPGIQRLLVSDAGVEGDGDQLPMMPIQTPSDLAYVIYTSGSTGLPKGVMIDHRGAVNTILDINERFEIGPGDRVLALSSLSFDLSVYDVFGILAAGGTIVVPDASKLRDPAHWAALIEREKVTVWNSVPALMRMLVEHSEGRPDSLARSLRLSLLSGDWIPVGLPGELQAIRPGVSVISLGGATEASIWSIGYPVRNVDPSWASIPYGRPLRNQTFHVLDEALEPRPVWVPGQLYIGGVGLALGYWRDEEKTRNSFLVHPETGERLYKTGDLGRYLPDGNIEFMGREDNQIKLRGYRVELGEIEETLKSHPNVRDAVIVPVGNDAANKLLLAYVVPEGTRRRAAEQDASLKTERVDARAHAAKADGLSDGERVQFKLARHGLRRDLDGKPVVDLTGLVPREAGLDVYARRRSVRTFLEAPIPFVEFGRFLSCLSSVEPDGAALPKFRYPSAGSTYPVQTYAYAKSGRIEGVDEGFYYYHPFEHRLLKVSDHGIERGAHVPQNFDVFDEAAFGLLFVGRIDAIESLYGSLSREFCLLEAGYMAQLLMEQAPSCNIGVCPVGQFDFEQVRPVLDLRHSDVYVHGMLGGRVDPRQFQVCTLGQDSSPRRATTRGAPPGRDQHFADILRDFLRTKLPEYMVPTVFVELDALPLTSNGKVDRKALRERKDTSSPRHSGHTAPRDALEEILVAVVREVLGLEVVGLQQSFVDLGATSIHIVRMRSLLQKRLDREIAITELFQYPNLGSLASGLRRDSKDLEQRPNMQDRVEARRKGRRRS", "sequence_length": 1410, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e1f91a0f8879d157c2ae412a34e9a92198728e6f0d43b2e52c72ec271ac86c72", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9KIZ9.json", "taxon_id": "56", "uniprot_accession": "Q9KIZ9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)", "origins": [ { "cited_uniprot_accession": "Q9KTV9", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/vibriobactin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:9973", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/vibriobactin.yaml" } ], "pfam_ids": [ "PF00668" ], "protein_name": "Vibriobactin synthesis protein, putative", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MSMLLAQKPFWQRHLAYPHINLDTVAHSLRLTGPLDTTLLLRALHLTVSEIDLFRARFSAQGELYWHPFSPPIDYQDLSIHLEAEPLAWRQIEQDLQRSSTLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSLLSGQTPTAAFKPYQSYLEEEAAYLTSHRYWQDKQFWQGYLREAPDLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLKLANANQIGWPDALVALCALYLESAEPDAPWLWLPFMNRWGSVAANVPGLMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELKVLASGSAEGINFTFRGSPQHELCLDITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLLAEPAALAATTSTRAIAS", "sequence_length": 438, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "09d5f8dbe8249684d2f6f12ea0dedd7678c3e62ae9826df6e3aafc620343f65a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9KTV9.json", "taxon_id": "243277", "uniprot_accession": "Q9KTV9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae", "origins": [ { "cited_uniprot_accession": "Q9RCF7", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/vibriobactin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:9973", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/vibriobactin.yaml" } ], "pfam_ids": [ "PF00668" ], "protein_name": "VibH", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MLLAQKPFWQRHLAYPHINLDTVAHSLRLTGPLDTTLLLRALHLTVSEIDLFRARFSAQGELYWHPFSPPIDYQDLSIHLEAEPLAWRQIEQDLQRSSTLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSLLSGQTPTAAFKPYQSYLEEEAAYLTSHRYWQDKQFWQGYLREAPDLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLKLANANQIGWPDALVALCALYLESAEPDAPWLWLPFMNRWGSVAANVPGLMVNSLPLLRLFAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELKVLASGSAEGINFTFRGSPQHELCLDITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLLAEPAALAATTSTRAIAS", "sequence_length": 436, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "edc2e38195af59e932bdd6c41ff833aba29378540b5e7bbd40a859d2af6fdefe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RCF7.json", "taxon_id": "666", "uniprot_accession": "Q9RCF7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)", "origins": [ { "cited_uniprot_accession": "Q9RK14", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/coelichelin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:80049", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/coelichelin.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF13193" ], "protein_name": "Peptide synthetase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MMEPTASLVRLSPAQLAGLRRRTGDFSDQVITEACAVALAYWAEGRGPAGLDLAPGTLFTDVLGWADSGGTAPTGWGADAGTVTVPGGVVPHEAQLALDDLADFPDRPLGTVGPCGPAERLELLAGWNDTDADRARPGLVEMFREQARARPDAVAVVDERRTLTYRQVEKLSAQLAHQLLARGLAVEDVVGISLERSAEMVIGLLAVLRAGGAFVPLDPHWPAERRAVVIEDAGVVVQLDASGEPAPGEPEAVAVDLGDWRFGDRPTEDTGVTVPGDALAYVIFTSGSTGRPKGAMIRHEAISERLLWQIHEILGFGHDDASLFKAPLSFDISINEIFLPLVSGGRLVVLRPGGERDPHHLLSVIDEQRVTFTYLVSSMLDVLLEMAGDSGRLDSLRHVWCGGEVLTPELYERFRTRLDIPLYHGYGPAETTIGVSHVVYRGAAERLSTSIGRANPNTRLYVLDDELRPVPVGVGGELYAGGLLLGRGYVNAPGLTASRFVANPFADDGSRLYRTGDLARFAPDGSLDFLGRADNQVKIRGMRLEIEDVEVGLAEHPRVRHTCVVARKNTAGGTYLVGYVIPAAGHEDLRADEVKAWAGEHMVEYMVPTHVVVMTEFPLTANGKLDRNALPEPVIPAGSSAPPTTDEERTVCAAVAALLQLDRVGVDQDFFQLGGDSILAISLLGRLRDAGLYVTARQIFTHSTVGALAAVASREDTTVVDHRDVPTGSVVGSPVVQWLGETTDAIDGFVQSVVLNTPADLTADALDLILAAVVRRHPMLRARLVRGERWGFDIPEAEAVPAVALWRESDQPLDACLALATGELDPVGGAMLRAVWRREARQLALVVHHVVIDGVSWRVLMDDLATAWRQFTSGTAVELPSGGTSFRRWTQLLERAAFDADSAYYRRALPGPDEPLGGRPLRADDTVARERIRTVSIGATATAALLGDTPAKFHTGINDVLVTALAVALARRRHDLGQTQTFAHIELEGHGREAAFVAPSAGFEPELSRTVGWFTTLFPVTVDPGTAPDPTAPAYLSAALKAVKEDLARVPDHGVSYGALRHLARVAFDAPAPQVLFNYLGRFDAGSSGDWQLASVNGQLGEQRDPRMRLPRALEFNAIAEPDATGAYTLVTAISWPDGMFTDTDITTLGAYYVEALTGLAALENGGHSPSDFHPLPLTQADVDALDGPALRDILPLTPLQEGLYFHSVYDGDATGSYVEQQLLTLEGEVDPGRLAAAATRLLTLHPNLAARFVPLADGRVVSVLESGREAPFTVLDRPGITDDEIRAHAEHDRRAGFDLATGPPMRYTLIRSGPRRHVLVQTVHHIVADGWSVPPMLRTLLAEYRAPGSGHALGGFPEHVRRLAARDGAASDRVWDEQLADLPGPSLIAEGHPPSAHFADTATTADTDVDAAARAAGVPLSVAVHGAWALTLGGILHRDDVVFGSTVSGRDADVPGIGDMVGLFINTIPLRARWADTTTARELLTAVRAHQAAVLPHQHVSLARIARRAGAGALFDTLVVFDVATDVAGLRRPGDPLAVTGIVNEGAPHYPLTLVVERTPDGRPRFNLIHDAELLREPEVREILRTFTRTLTHLLTRPEAPVGGLASEGTGRVEPVPPATLGELFDAAARRGPAAAAVTQCALDGATRSLTYGELSLAKDELAAVLRAAGVGPGKRVAVAVPRSVEQVVALVAVVGAGGAYVPLDLAYPDERLEYVLADSAPQVVLVTPEQRDRFARLLDRANVPARLLVLGEEPPPTAAEPGPAARWHDPAYVIYTSGSTGRPKGVVVPHSSVVTLLANTRPVMNFGPDDVWVQFHSFSFDFAVWELWGALTHGGELLVPDYGLTRSPVDFHRLVRERGVTVLNQTPSAFHRFAEADRHAGEPLPALRRIIFGGEGLDLARLRDWVARHGTESPELVNMYGITETTVHVTHRVLTAADFAPGDRAASPIGGPVPGLVTHLLDDRLRPVPPGRVGAIYVAGDQVSLGYLGRPGLTAGRFVANPFTADGSRMYHTGDLARRTLDGQLEFAGRADDQVQLKGFRIEPGEVESAIRDLDGVVDAAVTVADTDDHLVAHVVGRVPADLTGLLSAKLPAHMVPGRVLPVDALPLTVNGKLDRRALAERATRTPSAEPAPHGGNDSVLATLVGLFAETLPGSAPDADTDFFAAGGDSIVAITVINRARAAGLPVAPRDVFLLRTPRALAEHLATRTPPPEASPAPTGHQDGPLPPTPIMLRQRELGGSLARFAQARTLAAPEGTGFADAERAARAVVGAHPALRLRLRVEHGVWSLSTEPAREVAVTRGSGTDVTQTADEAAGRLDPENGDIVAFTWLETSRTLVVAVHHLAVDAVSWLILLDDLAAAMRGAVPAPPTTPYAEYARALTHRAAQQTDGLDHWISTLGAPAPLPAAGKRRETTVVLAPGVSDRVTRTAPAALGLGLTELLCGALRTALTRVQRTPTDLAIDLERHGRVPALDHHDYTRTVGWFTAIAPVRLTAHTDPVAAAREVTARRPDEHAHVAYGGLRYLNPQTAPLLGTARPQALFNYLGRGAESDAPRLTGADAGSPYAVEVNAWTDAATGGLHAAFTLAEGVPDEITEHWHRALERIADAAATAERTAPVSPLQRGLYFQAQLTGPAGHYVAQSYFTFERRLEPDALSRAAACVLARHPATGAGFTTDEDGNPVQVLAAGRRIDVHTVEAATDAEVDALRLGDRERGFDPAEPPLIRLTVVRLPDDRDGLLLSYHLLLWDGWSREIVLRDLFDAYRAVLAGEPLDPGPAAPGFEDHARALAARDPAPSERFWARHLAGLSGPTLLAGPAPALPDDLPRALAHTLTAERSDALRAAARTYGVTLNSVLTGAFGLLLGARTGRADAVFGVTVSGREGEGLADIVGVLLNTVPMWTRARPHDTVRAYLTAVQEARVDAMEHEHLGLGEIQRASGHDTLFDNLFVLQNFLDLDAFAEMNARHGITSVRADDSTHYPFTWVVTPGDRLTVKLEYRDHDTGHARALLDDYLRVLDDLAGRSGAAESRAPIGALPGLAPAPEPAPRTGIGTDTVVDRFDRAADREPDRTALVAHGSTMTFAHLRDRSRAVAGVLARRGIGPGATVGLALPRSLDSIVALFAVLRTGAAYVPLELDHPDERIAAVVADARPDAVLTVSAVTPRLTGGPDLIELDRPLPDAEPCVTFAPDDPDRLRHPAYTIYTSGSTGRPKGVVTEYAGLTNMLVNHRRRIFEPVLARHGHRTFRVAHTVSFAFDMSWEELLWLADGHEVHVCDEELRRDAPRLVAYCLEHGIDVVNVTPTYAQQLLAEGLLDDPARRPALVLLGGEAVTPALWTRLAATEGTVGYNLYGPTEYTINTLGVGTFECPDPVVGVAIDNTDVYVLDPWLRPLPDGVPGELYVAGVGIARGYLGQPAQTAHRFVACPFGAPGERMYRTGDLVVRRPDGNLMYLGRTDQQVKIRGHRVEPGEVEAAFAAHPAVRFVAAVAQPDPQVDGAHRLAAYLVLDGADLAEVAAQVGAALPDFLRPTHYAQVDRIPLTVNGKADTKALPEARPLGALTTAGERAPRTETETTVCELFAEALDLDDDEVSAVSDFVALGGHSMLAVRLTGLLRREYGPVITIRDLFTLRTPEAIARHLDDHS", "sequence_length": 3643, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7974890a2d754a63272a651adae7d42959c160965c2cc2515e14dcaedcab3a2d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RK14.json", "taxon_id": "100226", "uniprot_accession": "Q9RK14", "uniprot_release": "2026_03" } ], "pfam_id": "PF00668", "short_name": "Condensation", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 47, "discovery_scanned": true, "example_count": 47, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain UCBPP-PA14)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chase8-pf17152.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17152", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chase8-pf17152.yaml" } ], "pfam_ids": [ "PF00672", "PF00990", "PF17152" ], "protein_name": "Diguanylate cyclase TpbB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNRRRRYTGSNPSLRRVLYRAHLGVALVAVFTAGLAVTLVGLLTLRAYADPNQQLIARSISYTVEAAVVFGDAQAAEESLALIASSEEVSSAIVYDRQGQPLASWHRESTGPLHLLEQQLAHWLLSAPTEQPILHDGQKIGSVEVKGSGGSLLRFLLTGFAGMVLCLLLTALGAFYLSRRLVRGIVGPLDQLAKVAHTVRRERDFEKRVPEAGIAELSQLGEDFNALLDELESWQARLQDENASLAHQAHHDSLTSLPNRAFFEGRLSRALRDASEHREQLAVLFIDSDRFKEINDRLGHAAGDTVLVNIAMRIRGQLRESDLVARLGGDEFAVLLAPLASGADALRIADNIIASMQAPIRLSDGSTVSTSLTIGIALYPEHADTPAALLHDADMAMYIAKRQARGSRRLAELNDPRILQEEKEIDSATPEAPPK", "sequence_length": 435, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "08902cd9f730c3263b564cc68f24672328d18a6c04bad84621f6c772e5d5ecd8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0H2Z7X0.json", "taxon_id": "208963", "uniprot_accession": "A0A0H2Z7X0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Klebsiella pneumoniae subsp. pneumoniae (strain HS11286)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cpxa-peri-pf16527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cpxa-peri-pf16527.yaml" } ], "pfam_ids": [ "PF00512", "PF00672", "PF02518", "PF16527" ], "protein_name": "Sensor histidine kinase CpxA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLESEQRQGIMIEQHVEAELANDPPNDLMWWRRLFRAIDKWAPPGQRLLLVTSEGRVIGAERNEMQIIRNFIGQADNADHPQKKRYGRLEMVGPFSVRDGEDNYQLYLIRPASTSQSDFINLLFDRPLLLLIVTMLVSAPLLLWLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEFLAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELERIETEAHRLDSMINDLLVMSRNQAKNALVSETVKANQLWNEVLDNAAFEAEQMGKSFTVEYPPGPWPLYGNPNALESALENIVRNALRYSHTKISVSFSVDKDGITVNVDDDGPGVSPEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKADDSPLGGLRLTIWLPLYKRT", "sequence_length": 453, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c856b9ac4f2f29d8a6a4ba24a20a1e9dd0c36e06ba761ee1773ad527e24cf5ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0H3GPN8.json", "taxon_id": "1125630", "uniprot_accession": "A0A0H3GPN8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Botrytis cinerea (strain B05.10)", "origins": [ { "cited_uniprot_accession": "A0A384J5Y1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antifungal/fludioxonil.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:81763", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antifungal/fludioxonil.yaml" }, { "cited_uniprot_accession": "A0A384J5Y1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antifungal/iprodione.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:28909", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antifungal/iprodione.yaml" } ], "pfam_ids": [ "PF00072", "PF00512", "PF00672", "PF02518", "PF18947" ], "protein_name": "histidine kinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MEDSTIAHTTAILQTLALSSIDLPLTNVYGNKGIRLPGADTAEKLALERELAALVSRVQRLEARAITVNNQTLPDTPNELGAPSAFADVLTGAPSRASKSTTSRQQLVNSLLAAREAPTGGERPPKFTKLSDEELEALREHVDHQSKQLDSQKSELAGVHAQLFEQKQRQEQALNVLEVERVAALERELKKHQQANEAFQKALREIGEIVTAVARGDLSKKVQIHSVEMDPEITTFKRVINTMMDQLQIFSSEVSRVAREVGTEGILGGQAKISGVDGTWKELTDNVNVMAQNLTDQVREIASVTTAVAHGDLTQKIERPAQGEILQLQQTINTMVDQLRTFAAEVTRVARDVGTEGILGGQAEIEGVQGMWNTLIVNVNAMANNLTTQVRDIAIVTTAVAKGDLTQKVQAECKGEIKQLKETINSMVDQLQQFAREVTKIAREVGTEGRLGGQATVHDVEGTWRDLTENVNGMAMNLTTQVREIAKVTTAVARGDLTKKIEVEVQGEIASLKDTINTMVDRLSTFAFEVSKVAREVGTDGTLGGQAQVDNVEGKWKDLTENVNTMARNLTTQVRGISTVTQAIANGDMSQKIEVAAAGEILILKETINNMVDRLSIFSNEVQRVAKDVGVDGKMGGQADVAGIGGRWKEITTDVNTMANNLTTQVRAFGDITNAATDGDFTKLITVEASGEMDELKRKINQMVYNLRDSIQRNTLAREAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTQYQREMLNIVHNLANSLLTIIDDILDLSKIEANRMIMEEIPYTLRGTVFNALKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQVILNLVGNAIKFTEHGEVSLTIQKAEQDHCAPNEYAVEFCVSDTGIGIQADKLNLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMRGDVWVKSQYGKGSSFYFTCTVRLATSDISFIQKQLKPYQGHNVLFIDKGQTGHGKEIITMLTQLGLVPVVVDSEQHTILLGNGRTKEKIASTYDVIVVDSIESARKLRSIDEFKYIPIVLLAPVIHVSLKSALDLGITSYMTTPCLTIDLGNGMIPALENRAAPSLADNTKSFDILLAEDNIVNQRLAVKILEKYHHVVTVVGNGQEALDAIKEKRYDVILMDVQMPIMGGFEATAKIREYERSLGTQRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNHLIQTILKCATLGGALLEKGREVRQSANEESPNSQNGPRGAQHPASSPTPAHMRPAIEPRAYTTTGPINHGSAESPSLVTADAEDPLARLLMRAHSS", "sequence_length": 1315, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea153bbd0ebfd8fce684310a84e509fd18f8c86969311b55439e64e139a72a10", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A384J5Y1.json", "taxon_id": "332648", "uniprot_accession": "A0A384J5Y1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)", "origins": [ { "cited_uniprot_accession": "A7F519", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antifungal/fludioxonil.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:81763", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antifungal/fludioxonil.yaml" }, { "cited_uniprot_accession": "A7F519", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antifungal/iprodione.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:28909", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antifungal/iprodione.yaml" } ], "pfam_ids": [ "PF00072", "PF00512", "PF00672", "PF02518", "PF18947" ], "protein_name": "histidine kinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MGDTTIAHTTAILQTLAVLSLDSPQANVYGNKGIRLPGADTAEKLALERELAALVSRVQRLEAKATANNHVLPDTPNEIGAPSAFADVLTGAPSRASKSTTSRQQLVNSLLAAREAPTGGERPPKFTKLSDEELEALREHVDDQSKQLDSQKSELAGVHAQLFEQKQRQEQALNVLEVERVAALERELKKHQQANEAFQKALREIGEIVTAVARGDLSKKVQIHSVEMDPEITTFKRVINTMMDQLQIFSSEVSRVAREVGTEGILGGQAKISGVDGTWKELTDNVNVMAQNLTDQVREIASVTTAVAHGDLTQKIERPAQGEILQLQQTINTMVDQLRTFAAEVTRVARDVGTEGILGGQAEIEGVQGMWNTLIVNVNAMANNLTTQVRDIAIVTTAVAKGDLTQKVQAECKGEIKQLKETINSMVDQLQQFAREVTKIAREVGTEGRLGGQATVHDVEGTWRDLTENVNGMAMNLTTQVREIAKVTTAVARGDLTKKIEVEVQGEIASLKDTINTMVDRLGTFAFEVSKVAREVGTDGTLGGQAQVDNVEGKWKDLTENVNTMARNLTTQVRGISTVTQAIANGDMSQKIEVAAAGEILILKETINNMVDRLSIFSNEVQRVAKDVGVDGKMGGQADVAGIGGRWKEITTDVNTMANNLTTQVRAFGDITNAATDGDFTKLITVEASGEMDELKRKINQMVYNLRDSIQRNTLAREAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTQYQREMLNIVHNLANSLLTIIDDILDLSKIEANRMIMEEIPYTLRGTVFNALKTLAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQIILNLVGNAIKFTEHGEVSLTIQKAEQDHCAPNEYAVEFCVSDTGIGIQADKLNLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMRGDVWVKSQYGKGSSFYFTCTVRLATSDISFIQKQLKPYQGHNVLFIDKGQTGHGKEIITMLTQLGLVPVVVDSEQHTILLGNGRTKEKIASTYDVIVVDSIETARKLRSIDEFKYIPIVLLAPVVHVSLKSALDLGITSYMTTPCLTIDLGNGMIPALENRAAPSLADNTKSFDILLAEDNIVNQRLAVKILEKYHHVVTVVGNGQEALDAIKEKRYDVILMDVQMPIMGGFEATAKIREYERSLGTQRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNHLIQTILKCATLGGALLEKGREVRQSANEESPNSQNGTRSNQHPASSPTPAHLRPTIEPRAYTTTGPINHGSVESPSLVTADAEDPLARNLY", "sequence_length": 1309, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0f1a2732f6882673e57dbb43eded43dfa75328f7097ce55f0e51a028710a56ca", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A7F519.json", "taxon_id": "665079", "uniprot_accession": "A7F519", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/methyl-accepting-chemotaxis-protein-mcp-signaling-domain-methyl-accept-cd11386.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd11386", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/methyl-accepting-chemotaxis-protein-mcp-signaling-domain-methyl-accept-cd11386.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/chase3-ipr007891.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007891", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/chase3-ipr007891.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/methyl-accepting-chemotaxis-protein-mcp-signalling-domain-ipr004089.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR004089", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/methyl-accepting-chemotaxis-protein-mcp-signalling-domain-ipr004089.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chase3-pf05227.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05227", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chase3-pf05227.yaml" }, { "cited_uniprot_accession": "", "commit": 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"source_url": "https://rest.uniprot.org/uniprotkb/C0SP89.json", "taxon_id": "224308", "uniprot_accession": "C0SP89", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dcache-1-pf02743.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02743", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dcache-1-pf02743.yaml" } ], "pfam_ids": [ "PF00015", "PF00672", "PF02743" ], "protein_name": "Methyl-accepting chemotaxis protein PctA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIKSLKFSHKILLAASLVVFAAFALFTLYNDYLQRNAIREDLESYLREMGDVTSSNIQNWLGGRLLLVEQTAQTLARDHSPETVSALLEQPALTSTFSFTYLGQQDGVFTMRPDSPMPAGYDPRSRPWYKDAVAAGGLTLTEPYVDAATQELIITAATPVKAAGNTLGVVGGDLSLKTLVQIINSLDFSGMGYAFLVSGDGKILVHPDKEQVMKTLSEVYPQNTPKIATGFSEAELHGHTRILAFTPIKGLPSVTWYLALSIDKDKAYAMLSKFRVSAIAAALISIVAILVLLGLLIRLLMQPLHLMGRAMQDIAQGEGDLTKRLAVTSRDEFGVLGDAFNQFVERIHRSIREVAGTAHKLHDVSQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEIARNAADASHHASDANHQAEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVNIGQILEVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRAQESAQQIQKMIEELQVGAREAVATMTESQRYSLESVEIANRAGESLSSVTRRIGEIDGMNQSVATATEEQTAVVDSLNMDITEINTLNQEGVENLQATLRACGELETQAGRLRQLVDSFKI", "sequence_length": 629, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d90c573b3413f045f4b094a0e5feafca761c538b069dd6da44c88c0886e84248", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G3XD24.json", "taxon_id": "208964", "uniprot_accession": "G3XD24", "uniprot_release": "2026_03" }, 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"MRLTISRKFSLVFLTLILINLLVGGIGVLNMQHIIQKTDEINTKWIDGIKGITSINYVTEHLSSKEKDFLIYTDKSKMDTLDQEMNQIMEDINQKLDNYEKTISTDKEQKLFEQLQTKVNTYMDIHAQIIESGRTNDMDKARGLLVQTEASFEDMKKTITQLVDLNQEGSNTAVKETKAVYHKGLIYTALLVAASILISIFIWLYITRNIVKPIIRMKESANHIAEGDLSNDMEALNSKDELGDLNEALQKMVGNLRDIVGYSKDISSRVLSSSQVLATATNETRSGSKHITETMNEMAEGSEQQAQDAVTIAESMNEFTESIDKAYNHGITISDTSQNVLELAVSGNENMATSLQQMKTIHHIVEEAVHKVRSLEQHSQDINKLVQVINGIAEQTNLLSLNAAIEAARAGESGKGFAVVAEEVRKLADGVSDSVQDITRIVNGTQQEIHTVITYLESSFTEVEKGTENLTDTGQAMQHIKQSVTHVADSIKEVTDGLKQLTNQSITINQSIENIASVSEESAAGIEETFSITEQSAHSMDQVLLNAEELEQLANELNEKMGQFTI", "sequence_length": 566, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95ab4a3282a0c84519559381fdefa8cebd4e15dd5cf7e9aa787104ff908700a7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32239.json", "taxon_id": "224308", "uniprot_accession": "O32239", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa", "origins": [ { 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"MSMPLPMKLRTRLFLSISALITVSLFGLLLGLFSVMQLGRAQEQRMSHHYATIEVSQQLRQLLGDQLVILLRETPDGQALERSQNDFRRVLEQGRANTVDSAEQAALDGVRDAYLQLQAHTPALLEAPMVDNDGFSEAFNGLRLRLQDLQQLALAGISDAETSARHRAYLVAGLLGLVGVAILLIGFVTAHSIARRFGAPIETLARAADRIGEGDFDVTLPMTNVAEVGQLTRRFGLMAEALRQYRKTSVEEVLSGERRLQAVLDSIDDGLVIFDNQGRIEHANPVAIRQLFVSNDPHGKRIDEILSDVDVQEAVEKALLGEVQDEAMPDLVVDVAGESRLLAWSLYPVTHPGGHSVGAVLVVRDVTEQRAFERVRSEFVLRASHELRTPVTGMQMAFSLLRERLDFPAESREADLIQTVDEEMSRLVLLINDLLNFSRYQTGMQKLELASCDLVDLLTQAQQRFIPKGEARRVSLQLELGDELPRLQLDRLQIERVIDNLLENALRHSSEGGQIHLQARRQGDRVLIAVEDNGEGIPFSQQGRIFEPFVQVGRKKGGAGLGLELCKEIIQLHGGRIAVRSQPGQGARFYMLLPV", "sequence_length": 595, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c662eae37582962cf442cb1a6afad06a48333327ae5997972abc9519b3bf0be", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34206.json", "taxon_id": "287", "uniprot_accession": "O34206", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "P02942", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/other/methyl_accepting_chemotaxis_protein_complex.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0098561", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/other/methyl_accepting_chemotaxis_protein_complex.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P02942", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00015", "PF00672", "PF02203" ], "protein_name": "Methyl-accepting chemotaxis protein I", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "27ff11501f122cef15dfd85f42274ec776785dad8463ffccd06679655d59ac6d", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQTIRQQQSTLNGSWVALLQTRNTLNRAGIRYMMDQNNIGSGSTVAELMESASISLKQAEKNWADYEALPRDPRQSTAAAAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQDGFEKQYVAYMEQNDRLHDIAVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASLVAPMNRLIDSIRHIAGGDLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQRETSAVVKTVTPAAPRKMAVADSEENWETF", "sequence_length": 551, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "27ff11501f122cef15dfd85f42274ec776785dad8463ffccd06679655d59ac6d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P02942.json", "taxon_id": "83333", "uniprot_accession": "P02942", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "P05704", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/other/methyl_accepting_chemotaxis_protein_complex.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0098561", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/other/methyl_accepting_chemotaxis_protein_complex.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P05704", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00015", "PF00672", "PF02203" ], "protein_name": "Methyl-accepting chemotaxis protein III", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3344179c55fb8b43ea022bdef1e0ede5751251230ce1923e7ee2a2787458be5f", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNTTPSQRLGFLHHIRLVPLFACILGGILVLFALSSALAGYFLWQADRDQRDVTAEIEIRTGLANSSDFLRSARINMIQAGAASRIAEMEAMKRNIAQAESEIKQSQQGYRAYQNRPVKTPADEALDTELNQRFQAYITGMQPMLKYAKNGMFEAIINHESEQIRPLDNAYTDILNKAVKIRSTRANQLAELAHQRTRLGGMFMIGAFVLALVMTLITFMVLRRIVIRPLQHAAQRIEKIASGDLTMNDEPAGRNEIGRLSRHLQQMQHSLGMTVGTVRQGAEEIYRGTSEISAGNADLSSRTEEQAAAIEQTAASMEQLTATVKQNADNAHHASKLAQEASIKASDGGQTVSGVVKTMGAISTSSKKISEITAVINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLASRSAQAAKEIEGLISESVRLIDLGSDEVATAGKTMSTIVDAVASVTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQQNASLVEEASAAAVSLEEQAARLTEAVDVFRLHKHSVSAEPRGAGEPVSFATV", "sequence_length": 546, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3344179c55fb8b43ea022bdef1e0ede5751251230ce1923e7ee2a2787458be5f", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P05704.json", "taxon_id": "83333", "uniprot_accession": "P05704", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "P07017", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/other/methyl_accepting_chemotaxis_protein_complex.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0098561", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/other/methyl_accepting_chemotaxis_protein_complex.yaml" }, { "cited_uniprot_accession": "P07017", "commit": "62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "TraitMech", "path": "data/traits/physiology/thermotaxis.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "traitmech:000580", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/TraitMech/blob/62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b/data/traits/physiology/thermotaxis.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P07017", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00015", "PF00672", "PF02203" ], "protein_name": "Methyl-accepting chemotaxis protein II", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0945c75e6b51c368fcbacd6a38f64e2fdd3bc5a6d144ab7838fc845436b51510", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MINRIRVVTLLVMVLGVFALLQLISGSLFFSSLHHSQKSFVVSNQLREQQGELTSTWDLMLQTRINLSRSAVRMMMDSSNQQSNAKVELLDSARKTLAQAATHYKKFKSMAPLPEMVATSRNIDEKYKNYYTALTELIDYLDYGNTGAYFAQPTQGMQNAMGEAFAQYALSSEKLYRDIVTDNADDYRFAQWQLAVIALVVVLILLVAWYGIRRMLLTPLAKIIAHIREIAGGNLANTLTIDGRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVDGVVKTMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIEDSVSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQAVSAFRLAASPLTNKPQTPSRPASEQPPAQPRLRIAEQDPNWETF", "sequence_length": 553, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0945c75e6b51c368fcbacd6a38f64e2fdd3bc5a6d144ab7838fc845436b51510", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P07017.json", "taxon_id": "83333", "uniprot_accession": "P07017", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "P07018", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/other/methyl_accepting_chemotaxis_protein_complex.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0098561", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/other/methyl_accepting_chemotaxis_protein_complex.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P07018", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00015", "PF00672", "PF02203" ], "protein_name": "Methyl-accepting chemotaxis protein IV", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "af5c82fc378df50014f9740453c6df7a640371ab0c08205e5ba322243811b2cc", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MFNRIRISTTLFLILILCGILQIGSNGMSFWAFRDDLQRLNQVEQSNQQRAALAQTRAVMLQASTALNKAGTLTALSYPADDIKTLMTTARASLTQSTTLFKSFMAMTAGNEHVRGLQKETEKSFARWHNDLEHQATWLESNQLSDFLTAPVQGSQNAFDVNFEAWQLEINHVLEAASAQSQRNYQISALVFISMIIVAAIYISSALWWTRKMIVQPLAIIGSHFDSIAAGNLARPIAVYGRNEITAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVGQNADNARQASELAKNAATTAQAGGVQVSTMTHTMQEIATSSQKIGDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKGLIEESVNRVQQGSKLVNNAAATMIDIVSSVTRVNDIMGEIASASEEQQRGIEQVAQAVSQMDQVTQQNASLVEEAAVATEQLANQADHLSSRVAVFTLEEHEVARHESVQLQIAPVVS", "sequence_length": 533, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "af5c82fc378df50014f9740453c6df7a640371ab0c08205e5ba322243811b2cc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P07018.json", "taxon_id": "83333", "uniprot_accession": "P07018", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P08401", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00512", "PF00672", "PF02518" ], "protein_name": "Sensor protein CreC", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "68dc446b56f427835d552003d57e5fe7fe83f35442851fcd2902cad7e83492d3", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRIGMRLLLGYFLLVAVAAWFVLAIFVKEVKPGVRRATEGTLIDTATLLAELARPDLLSGDPTHGQLAQAFNQLQHRPFRANIGGINKVRNEYHVYMTDAQGKVLFDSANKAVGQDYSRWNDVWLTLRGQYGARSTLQNPADPESSVMYVAAPIMDGSRLIGVLSVGKPNAAMAPVIKRSERRILWASAILLGIALVIGAGMVWWINRSIARLTRYADSVTDNKPVPLPDLGSSELRKLAQALESMRVKLEGKNYIEQYVYALTHELKSPLAAIRGAAEILREGPPPEVVARFTDNILTQNARMQALVETLLRQARLENRQEVVLTAVDVAALFRRVSEARTVQLAEKKITLHVTPTEVNVAAEPALLEQALGNLLDNAIDFTPESGCITLSAEVDQEHVTLKVLDTGSGIPDYALSRIFERFYSLPRANGQKSSGLGLAFVSEVARLFNGEVTLRNVQEGGVLASLRLHRHFT", "sequence_length": 474, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "68dc446b56f427835d552003d57e5fe7fe83f35442851fcd2902cad7e83492d3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P08401.json", "taxon_id": "83333", "uniprot_accession": "P08401", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cpxa-peri-pf16527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cpxa-peri-pf16527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hamp-pf00672.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF00672", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hamp-pf00672.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hiska-pf00512.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hiska-pf00512.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AE82", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00512", "PF00672", "PF02518", "PF16527" ], "protein_name": "Sensor histidine kinase CpxA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "2966a8b2f1a50e8bb42b6ba023e8a555de479e1542ff83d61b01d08a583f10ef", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQRQGLMIEQHVEAELANDPPNDLMWWRRLFRAIDKWAPPGQRLLLVTTEGRVIGAERSEMQIIRNFIGQADNADHPQKKKYGRVELVGPFSVRDGEDNYQLYLIRPASSSQSDFINLLFDRPLLLLIVTMLVSTPLLLWLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEFLAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELERIETEAQRLDSMINDLLVMSRNQQKNALVSETIKANQLWSEVLDNAAFEAEQMGKSLTVNFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVSPEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIWLPLYKRS", "sequence_length": 457, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2966a8b2f1a50e8bb42b6ba023e8a555de479e1542ff83d61b01d08a583f10ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AE82.json", "taxon_id": "83333", "uniprot_accession": "P0AE82", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cpxa-peri-pf16527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cpxa-peri-pf16527.yaml" } ], "pfam_ids": [ "PF00512", "PF00672", "PF02518", "PF16527" ], "protein_name": "Sensor protein CpxA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQRQGLMIEQHVEAELANDPPNDLMWWRRLFRAIDKWAPPGQRLLLVTTEGRVIGAERSEMQIIRNFIGQADNADHPQKKKYGRVELVGPFSVRDGEDNYQLYLIRPASSSQSDFINLLFDRPLLLLIVTMLVSTPLLLWLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEFLAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELERIETEAQRLDSMINDLLVMSRNQQKNALVSETIKANQLWSEVLDNAAFEAEQMGKSLTVNFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVSPEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIWLPLYKRS", "sequence_length": 457, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2966a8b2f1a50e8bb42b6ba023e8a555de479e1542ff83d61b01d08a583f10ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AE83.json", "taxon_id": "199310", "uniprot_accession": "P0AE83", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AEC5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00072", "PF00512", "PF00672", "PF01627", "PF02518", "PF09984" ], "protein_name": "Signal transduction histidine-protein kinase BarA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "17c7d59fb9f3326c7304dd5cd8decfb10760349910cc745b93d4fe11f64ff01d", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG", "sequence_length": 918, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "17c7d59fb9f3326c7304dd5cd8decfb10760349910cc745b93d4fe11f64ff01d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AEC5.json", "taxon_id": "83333", "uniprot_accession": "P0AEC5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AEJ4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00512", "PF00672", "PF02518" ], "protein_name": "Sensor histidine kinase EnvZ", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "aa13d606ade5090b042c74a86d2a3e9b7129717accfe918fa9f47724f6f62be8", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRRLRFSPRSSFARTLLLIVTLLFASLVTTYLVVLNFAILPSLQQFNKVLAYEVRMLMTDKLQLEDGTQLVVPPAFRREIYRELGISLYSNEAAEEAGLRWAQHYEFLSHQMAQQLGGPTEVRVEVNKSSPVVWLKTWLSPNIWVRVPLTEIHQGDFSPLFRYTLAIMLLAIGGAWLFIRIQNRPLVDLEHAALQVGKGIIPPPLREYGASEVRSVTRAFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEMPMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVTRAQGTTKEG", "sequence_length": 450, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "aa13d606ade5090b042c74a86d2a3e9b7129717accfe918fa9f47724f6f62be8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AEJ4.json", "taxon_id": "83333", "uniprot_accession": "P0AEJ4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hiska-3-pf07730.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07730", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hiska-3-pf07730.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AFA2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00672", "PF02518", "PF07730", "PF13675" ], "protein_name": "Nitrate/nitrite sensor protein NarX", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "bd35c6c56c31f8d2ab01cd8ac8720b681d136fe0657eec8495abc861b7f87420", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLKRCLSPLTLVNQVALIVLLSTAIGLAGMAVSGWLVQGVQGSAHAINKAGSLRMQSYRLLAAVPLSEKDKPLIKEMEQTAFSAELTRAAERDGQLAQLQGLQDYWRNELIPALMRAQNRETVSADVSQFVAGLDQLVSGFDRTTEMRIETVVLVHRVMAVFMALLLVFTIIWLRARLLQPWRQLLAMASAVSHRDFTQRANISGRNEMAMLGTALNNMSAELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYDTDDEENHQEFTCQPDMTCDDKGCQLCPRGVLPVGDRGTTLKWRLADSHTQYGILLATLPQGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWAQLRELLTTFRLQLTEPGLRPALEASCEEYSAKFGFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHSQASEVVVTVAQNDNQVKLTVQDNGCGVPENAIRSNHYGMIIMRDRAQSLRGDCRVRRRESGGTEVVVTFIPEKTFTDVQGDTHE", "sequence_length": 598, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "bd35c6c56c31f8d2ab01cd8ac8720b681d136fe0657eec8495abc861b7f87420", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AFA2.json", "taxon_id": "83333", "uniprot_accession": "P0AFA2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P18392", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00512", "PF00672", "PF02518" ], "protein_name": "Sensor protein RstB", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "81fa107503babef9699ef2a88e98c0c92e4aed760db84486428f934ac2ba9005", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMNSSLYLMRSELREIPPHDWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVALDDQYTFLQRIPRSHYVLAVGPVPYLYYLHQMRLLDIALIAFIAISLAFPVFIWMRPHWQDMLKLEAAAQRFGDGHLNERIHFDEGSSFERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNLSAAESQALNRDISQLEALIEELLTYARLDRPQNELHLSEPDLPLWLSTHLADIQAVTPDKTVRIKTLVQGHYAALDMRLMERVLDNLLNNALRYCHSTVETSLLLSGNRATLIVEDDGPGIAPENREHIFEPFVRLDPSRDRSTGGCGLGLAIVHSIALAMGGTVNCDTSELGGARFSFSWPLWHNIPQFTSA", "sequence_length": 433, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "81fa107503babef9699ef2a88e98c0c92e4aed760db84486428f934ac2ba9005", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P18392.json", "taxon_id": "83333", "uniprot_accession": "P18392", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P27896", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00672", "PF02518", "PF07730", "PF13675", "PF30364" ], "protein_name": "Nitrate/nitrite sensor protein NarQ", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ce764d93d68e176c5dcfc58b320e47198dcaee502ae76354afc49e3a36c5a0be", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM", "sequence_length": 566, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ce764d93d68e176c5dcfc58b320e47198dcaee502ae76354afc49e3a36c5a0be", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P27896.json", "taxon_id": "83333", "uniprot_accession": "P27896", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Paracoccus denitrificans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lapd-moxy-n-pf16448.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16448", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lapd-moxy-n-pf16448.yaml" } ], "pfam_ids": [ "PF00672", "PF07730", "PF16448" ], "protein_name": "Methanol utilization control sensor protein MoxY", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGLACAVSLSLCLIVSAILIVNARQAVQEETESAFRLAHEAVVRRLPPSHGGRDTMTEAIGLAEEIDGLRHVSARILDPEGQPLQHRAHGQLRSEASAPQWFSALMTPPLVEALVPITHYPNVLGMLRVAADPTDEIAEVWGDFSIILPVLFLAGLAMVGLAFLMTTLLTRRLQSVQAAMAQMQDGRLSVRAPDDRLTEFADLAAGVNALASHLQAEQAENDLLQARLIGSSEAERSRIALDLHDEMGPQLFALRAAVSHAQAMTADLPERPAALDETLDAIAGHALEVQRSARTAINDLRPMLLGEASLAELLAELVTGFRDVASETRVVLDVDPEVEGSSPGELAELSIYRFARESVLNAMRHGRATVVRVSLDTMPDEPGQIVVRVTDNGKGPQSGTGRPTPGFGQIGIEDRARALGATYLPPWRDNRLTHTELRMPRPCKLR", "sequence_length": 446, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "937915027a0278f0ffa55e9feef595e75f57e8c66942a27e4405517864fe6954", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P29905.json", "taxon_id": "266", "uniprot_accession": "P29905", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hamp-pf00672.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF00672", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hamp-pf00672.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hiska-pf00512.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hiska-pf00512.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P30847", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00512", "PF00672", "PF02518", "PF29282" ], "protein_name": "Signal transduction histidine-protein kinase BaeS", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "032ee7c8792fd62075e414a824b103ba99f29e09e65bd492ffbd1776c3a0a0da", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKFWRPGITGKLFLAIFATCIVLLISMHWAVRISFERGFIDYIKHGNEQRLQLLSDALGEQYAQHGNWRFLRNNDRFVFQILRSFEHDNSEDKPGPGMPPHGWRTQFWVVDQNNKVLVGPRAPIPPDGTRRPILVNGAEVGAVIASPVERLTRNTDINFDKQQRQTSWLIVALATLLAALATFLLARGLLAPVKRLVDGTHKLAAGDFTTRVTPTSEDELGKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGVRKFTPETVASLQAEVGTLTKLVDDLHQLSMSDEGALAYQKAPVDLIPLLEVAGGAFRERFASRGLKLQFSLPDSITVFGDRDRLMQLFNNLLENSLRYTDSGGSLQISAGQRDKTVRLTFADSAPGVSDDQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLERDLQREV", "sequence_length": 467, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "032ee7c8792fd62075e414a824b103ba99f29e09e65bd492ffbd1776c3a0a0da", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P30847.json", "taxon_id": "83333", "uniprot_accession": "P30847", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hisk-sensor-pf18698.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18698", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hisk-sensor-pf18698.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P35164", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00512", "PF00672", "PF00989", "PF02518", "PF18698" ], "protein_name": "Sensor histidine kinase ResE", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "9ab442cd7ca1171213779b31472bd6af735a347b7df267c5d531ac25cf2eda08", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKFWKSVVGKLWFTILSLVLIVLFILTVLLLEFIENYHVEEAENDLTQLANKVAVILENHEDQALARSITWELADNLTSIAIIQDEKNHWYSPNDKNRLSSITVEQIQHDKDLNKALKDHKKVSKRTGLSDTDTDNERLIVGVPYEKDGKKGMVFLSQSLLAVKDTTKHTTRYIFLAAGIAIVLTTFFAFFLSSRVTYPLRKMREGAQDLAKGKFDTKIPILTQDEIGELATAFNQMGRQLNFHINALNQEKEQLSNILSSMADGVITINIDGTILVTNPPAERFLQAWYYEQNMNIKEGDNLPPEAKELFQNAVSTEKEQMIEMTLQGRSWVLLMSPLYAESHVRGAVAVLRDMTEERRLDKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEEDRKEIAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALDHDISLTEEEFMFDEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDGLKIDIKDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFSFYIPTKR", "sequence_length": 589, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "9ab442cd7ca1171213779b31472bd6af735a347b7df267c5d531ac25cf2eda08", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P35164.json", "taxon_id": "224308", "uniprot_accession": "P35164", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/methyl-accepting-chemotaxis-protein-mcp-signaling-domain-methyl-accept-cd11386.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd11386", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/methyl-accepting-chemotaxis-protein-mcp-signaling-domain-methyl-accept-cd11386.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/methyl-accepting-chemotaxis-protein-mcp-signalling-domain-ipr004089.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR004089", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/methyl-accepting-chemotaxis-protein-mcp-signalling-domain-ipr004089.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/single-cache-domain-3-ipr033463.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033463", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/single-cache-domain-3-ipr033463.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/scache-3-3-pf17202.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17202", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/scache-3-3-pf17202.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mcpsignal-pf00015.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00015", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mcpsignal-pf00015.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/chemotaxis-transduc-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50111", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/chemotaxis-transduc-2.yaml" } ], "pfam_ids": [ "PF00015", "PF00672", "PF17202" ], "protein_name": "Methyl-accepting chemotaxis protein TlpC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLIKRFKMKLGTKILCLVFVVILLFSASVGTVMLKEITESMKQMATEKAKGDLALSSTYIDDVMSGDWQVKNNKLYKGQTQINGNEDIVDLLGEKTGDTITIFQGDTRVATNVMKNGERAVGTQASSEVIAAVLKKGKRFYGQADVAGSSYQTAYMPLKDQNGNIIGMLYTGANQSILASLTQSLFTQFAIVLVIVIMVSVILVLVFTRKINKRLNALKSAFESAGNGDMTIEVSDKTGDELSELSVYYNKMRMKLNDTIQTVQQSALQLASASQQLSAGAEETNQASEKITEAVQQIANGAQDQITRIENSESSLKQASADIRDISANTAAIADKGQLAQSKADIGQKEIANVQAQMDAIHQSIQKSGEIIHQLDGRSKQIEQILSVITQIADQTNLLALNAAIEAARAGEQGKGFAVVADEVRKLAEESQQSAGQISKLIIEIQKDMNRSARSVEHVKTEAAEGVTMIQRTRDAFKEIAAATGEISAEISDLSASVTNISASAHQINDSFAANTADIKESTKNTRQAAALTEEQFAAMEEITAASETLSQLAEELTGIISQFKMINQAENG", "sequence_length": 573, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6ed8f7528278669b3ca9e80721daac6fe82fa3e799f370e35bea96311edfb2a2", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P39209.json", "taxon_id": "224308", "uniprot_accession": "P39209", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dcache-1-pf02743.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02743", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dcache-1-pf02743.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hamp-pf00672.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF00672", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hamp-pf00672.yaml" } ], "pfam_ids": [ "PF00015", "PF00672", "PF02743" ], "protein_name": "Methyl-accepting chemotaxis protein McpB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTFINWLKKPSISKKLIVSFIAILIIPILILEFSSYRSASGKLDQEIMGNAKNSVDTFNTTVTNDLGEKAKAVTFFSESLKRSAFKGKSNQEEIKAKFSQYVSINQGVARIYGGADNGTYVQAPKEKLPEGYDPRQRPWYQDAMKAGGEIVVTDPYVAASDGSMVITIAQELKDGSGVVAMDITIDKLLEQMKQIKVGKEGYAFIATKNKTYVAHKNHKAGEKLSGDWVAKMYANDSGELQYTLNNEDKKMTYTTNELTGWKIAGTMYMDEIKDASKSVLTTGMIVLIASIVAGGILILFIVRSITKPLKRLVQSSKTISRGDLTETIEIHSKDELGELGESFNEMGQSLRSLISAIQDSVNNVAASSEQLTASAGQTSKATEHITMAIEQFSNGNEEQSEKVESSSHQLNLMNEGLQQVSQTSSDITKASIQSTEIAGTGEKFVQQTVGQMNSINQSVQQAEAVVKGLEGKSKDITSILRVINGIADQTNLLALNAAIEAARAGESGRGFSVVAEEVRKLAVQSADSAKEIEKLIQEIVAEIDTSLHMFKEVNQEVQSGLVVTDNTKESFQSIFSMTNEIAGKLQTMNSTVEQLSDRSQHVSAAVSGIADVSKESSASIQDIAASAEEQLASMEEISSSATTLAQMAEELRDLTKQFKIE", "sequence_length": 662, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fc3fd148f523f565b70d9df19809b20cdc835d94ef4b6bff5a90ae910d6337d8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P39215.json", "taxon_id": "224308", "uniprot_accession": "P39215", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hpt-pf01627.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01627", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hpt-pf01627.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P39453", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00072", "PF00512", "PF00672", "PF01627", "PF02518", "PF21689" ], "protein_name": "Sensor protein TorS", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "36ec90b1738d097ef610d9768d8b19b20f241ad13b3d90de9ee70ec00747c78f", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNLTLTRRLWMGFALMALLTLTSTLVGWYNLRFISQVEKDNTQALIPTMNMARQLSEASAWELFAAQNLTSADNEKMWQAQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEISRSLRQQGELVGQRLQLRQQQQQLSQQIVAAADEIARLAQGQANNATTSAGATQAGIYDLIEQDQRQAAESALDRLIDIDLEYVNQMNELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTTVSQYSDLLALYQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDTIELRNQHGLAHLEKASARGQYSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEGYIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGLRLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQVNNDQSLDVSQLNEDAQLMGTEKIHEWLVLFTQHALPLLDEIDIARASQDSEKIKRAAHQLKSSCSSLGMHIASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLHKKDLNAI", "sequence_length": 914, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "36ec90b1738d097ef610d9768d8b19b20f241ad13b3d90de9ee70ec00747c78f", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P39453.json", "taxon_id": "83333", "uniprot_accession": "P39453", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Natronomonas pharaonis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/htr2-pf17909.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17909", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/htr2-pf17909.yaml" } ], "pfam_ids": [ "PF00015", "PF00672", "PF17909" ], "protein_name": "Sensory rhodopsin II transducer", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLNVSRLLLPSRVRHSYTGKMGAVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLIILLGINLGLVAATLGGDTAASLSTLAAKASRMGDGDLDVELETRREDEIGDLYAAFDEMRQSVRTSLEDAKNAREDAEQAQKRAEEINTELQAEAERFGEVMDRCADGDFTQRLDAETDNEAMQSIEGSFNEMMDGIEALVGRIERFADAVSEDAEAVRANAESVMEASEDVNRAVQNISDAAGDQTETVQQIALEMDDVSATTEEVAASADDIAKTARQAAETGEAGRETAETAITEMNEVESRTEQAVASMEELNEDVREIGEVSEMIADIAEQTNILALNASIEAARADGNSEGFAVVADEVKALAEETKAATEEIDDLIGTVQDRTQTTVDDIRETSDQVSEGVETVEDTVDALERIVDSVERTNDGIQEINQSTDAQADAAQKATTMVEDMAATSEQTASDAETAAETTETQAESVKEVFDLIDGLSEQADSLSETLSRTDTEEASAADLDDQPTLAAGDD", "sequence_length": 534, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "29c71a08ea5dca54ad88c247d4fbe1088fd20d458bf755b0cd05c71f8eb32f1d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P42259.json", "taxon_id": "2257", "uniprot_accession": "P42259", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cuss-pf21085.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21085", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cuss-pf21085.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P77485", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00512", "PF00672", "PF02518", "PF21085" ], "protein_name": "Sensor histidine kinase CusS", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f106a9f0ed76c567561827eab74921adebdcb57d8ad68c1e3e804458e183bb42", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVSKPFQRPFSLATRLTFFISLATIAAFFAFAWIMIHSVKVHFAEQDINDLKEISATLERVLNHPDETQARRLMTLEDIVSGYSNVLISLADSQGKTVYHSPGAPDIREFTRDAIPDKDAQGGEVYLLSGPTMMMPGHGHGHMEHSNWRMINLPVGPLVDGKPIYTLYIALSIDFHLHYINDLMNKLIMTASVISILIVFIVLLAVHKGHAPIRSVSRQIQNITSKDLDVRLDPQTVPIELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALAEDRGVELRFVGDKCQVAGDPLMLRRALSNLLSNALRYTPTGETIVVRCQTVDHLVQVIVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDARGTRFVITLPA", "sequence_length": 480, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f106a9f0ed76c567561827eab74921adebdcb57d8ad68c1e3e804458e183bb42", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P77485.json", "taxon_id": "83333", "uniprot_accession": "P77485", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas syringae pv. tomato", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cuss-pf21085.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21085", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cuss-pf21085.yaml" } ], "pfam_ids": [ "PF00512", "PF00672", "PF02518", "PF21085" ], "protein_name": "Sensor protein CopS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKPGSLTLRLSLLFVVAVAAVLIIVGVAFNELSRHHFRALDAQALGEKLEAITQIAKESGANPELLKARWHTLLGAHPDLSAVFLKTDGTPFFAEPPQSAVPSLAQATQRDGVWEWEKEGRMFRALTASVSLPTASPPLTAWLVLDVTTHMHFFAMLERWFWGVLLASTVLSAALGWLVAKNGLRPVARVTQTAASMSAGSLKERIPLEPVPDELRALITAFNSMLGRLDDSFMRLSNFSADIAHELRTPISNLRTHTEVILAKKRAPEVYEENLSSNLEELNRLSGIIDGMLFLAKSDNGLIVPEAVELDLRTVISKLFGYYEFLAEDKGIQLQASGNASIFADSVMIDRVVSNLLSNALRYTSSGETIKVSIHDHGGRVELRLENPGPEIVPQHLDRIFDRFYRVDPARREGRECGAGASDCPVLDASAWRHYLVYIPRGPNDLHPHLHAIACPTNLTCRPDSLGTAKPGHTRLGEHETGCHCAG", "sequence_length": 487, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "089553c29de7c0c42e52b20f0bd7a08b0cde122ba2a8118d5e212d57835a7eab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q02541.json", "taxon_id": "323", "uniprot_accession": "Q02541", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/4hb-mcp-1-pf12729.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12729", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/4hb-mcp-1-pf12729.yaml" } ], "pfam_ids": [ "PF00015", "PF00672", "PF12729" ], "protein_name": "Putative sensory transducer protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRYNTAKLLVYDAEQVSKGIEKIQEHVENTEKYLSLYESTVINETDRIQLQELKALWEKYKSLVDKEVELVKSGKTEEARQLLLSDIDDIGDTLRDYFEAFVEYNTTAAKEKVDENKQVASTASTVMIVVIFVGILIAIALGVFISRIISKPIGQMVEAADRLALGDVEVDVKAETRDEIGKLAESFKRMIENIREQAYVVERIAAGDMTVDVRVKSDKDLLGKKLKEMVDTNNEVLSNINEVAAQVAAGAKQVSDSSMQLSQGATEQASSIEELTASLEQVANQTQLSAKNANQANELAEVAKNNAEQGNKQMAEMLNAMEEINNSSSNISRIIKVIDEIAFQTNILALNAAVEAARAGQHGKGFAVVAEEVRNLAARSANAAKETTELIEGTIKRTENGTKIARETAEALNKIVEGISKAATLVNDIAVASNEQAAAITQINQGIAQVSQVVQTNSATSEESAAASEELSSQAELLKRSIAKFKLKNMGKMTSNRYKEVSPEIMRMLEDYTENKQPKSYSKEENGEYSDGKETAEKDVGGLKQKILLSDSEFGKY", "sequence_length": 557, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f63e5d4187427cdc8a30963c290a1a8fa6aff316aea440914f8d4e4e5596d14c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q02929.json", "taxon_id": "203119", "uniprot_accession": "Q02929", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hk-sensor-pf16750.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16750", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hk-sensor-pf16750.yaml" } ], "pfam_ids": [ "PF00512", "PF00672", "PF02518", "PF16750" ], "protein_name": "Sensor protein PfeS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRHPLLWKLALLQVGFCLLLTWLIYTWGLSVERSTYFLAPADRHYLADYARQAEDAWRREGAAGAERFRKELSAKEDTWVALVGPHLESLGSTPLSAEESSHLTFMRKLDWPMSRRLQDELPYVSIEFPGHPEQGRLVIQLPERLLPGGLTPWTHLVTHGIVPTLLAALLGLLLYRHLVVPLNRLRDRADALRADELESTPLAAPLAARRDELGELAQALEHMAERLRLSLAQQRLLLRTLSHELRTPLARLRIAHDSELPPEQLRQRLDREIGDMQRLLEDTLDLAWMDTERPQLPTEPVLALSVWEALRDDACFESGWDPARLPCRLGVDCRVEVHLDSLAQAMENLLRNAIRHSPEDGTVSLDGEREGDFWHLRLQDQGPGVAEDQLERIFLPYQRLDDSAGEGFGLGLAIARRAIELQGGRLWASNGKPGLCLHLWLPAAA", "sequence_length": 446, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9fe3c50d92e0ef57d200bdaff41ede32bb402234f5a0f489d8202da0841d3987", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q04804.json", "taxon_id": "208964", "uniprot_accession": "Q04804", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain NCTC 8325 / PS 47)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cache-walk-pf23846.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cache-walk-pf23846.yaml" } ], "pfam_ids": [ "PF00512", "PF00672", "PF02518", "PF13426", "PF23846" ], "protein_name": "Sensor protein kinase WalK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKWLKQLQSLHTKLVIVYVLLIIIGMQIIGLYFTNNLEKELLDNFKKNITQYAKQLEISIEKVYDEKGSVNAQKDIQNLLSEYANRQEIGEIRFIDKDQIIIATTKQSNRSLINQKANDSSVQKALSLGQSNDHLILKDYGGGKDRVWVYNIPVKVDKKVIGNIYIESKINDVYNQLNNINQIFIVGTAISLLITVILGFFIARTITKPITDMRNQTVEMSRGNYTQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALKMLGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIARVNFSTIVQETGFVTGYIAVLHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIEDGDWDE", "sequence_length": 608, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6698a04bdf99874b3d7d453dc033c95cb5adc265986ae885ffbc7e43fd1f315c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2G2U4.json", "taxon_id": "93061", "uniprot_accession": "Q2G2U4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dcache-2-pf08269.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08269", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dcache-2-pf08269.yaml" } ], "pfam_ids": [ "PF00015", "PF00672", "PF08269" ], "protein_name": "Methyl-accepting chemotaxis protein Amb2333", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGPYQRLPWGIWRMSISNWRFRAKIFLIVVLSLLGMGAIVAVNLANLHNELMAARKIKTQHVVETAHSLIGHYVKLSQSGQMSTDAAQAAAIEAIKTMRYAGTEYFWINSLAGKMVVHPIRPDMLGKDLMGLKDPAGKLFFEAMIDVVKKDKAGFVDYLWPKPGLDQPVPKVSYVKGIEEWGWLVGSGIYVDDVDSAFRAEVMNLGGIVTGVVLLVLLVSWWIGKNVVDGMRNATGGIRKLAEGDTSVEIKGHERGDEIGELVQAAEIFREHSLTMKRMSEERAEQRRQAEAERRSTLAGLATELERGVKSTVVTVSESAGRMRSTATGMAGAIDNASQESQAVAAAAQQTSSNVEAVAAAAEELSSSIRGIGSQVAESTQIAKEAVDAANRTDGVVRGLSEAADRIGEVVRLINDIAGQTNLLALNATIEAARAGEAGKGFAVVANEVKHLASQTAKATEEIGQQIASIQSTTADAVGAIESIGKTIGRMDEIANAIAEAVEQQGAATQEIARNVHEAADGAQEVSHHISSISRTASEAGVAARELLGAAAELAGESETLRNGVDRFLGEVRAM", "sequence_length": 576, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "316907fbe39f42f88ec3c07ec9623c33f6629d469f7573d8ed71390b46817cd2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2W4T8.json", "taxon_id": "342108", "uniprot_accession": "Q2W4T8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cache-walk-pf23846.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cache-walk-pf23846.yaml" } ], "pfam_ids": [ "PF00512", "PF00672", "PF02518", "PF13426", "PF23846" ], "protein_name": "Sensor histidine kinase WalK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKVGFFRSIQFKITLIYVLLIIIAMQIIGVYFVNQVEKSLISSYEQSLNQRIDNLSYYIEQEYKSDNDSTVIKDDVSRILNDFTKSDEVREISFVDKSYEVVGSSKPYGEEVAGKQTTDLIFKRIFSTKQSYLRKYYDPKSKIRVLISAKPVMTENQEVVGAIYVVASMEDVFNQMKTINTILASGTGLALVLTALLGIFLARTITHPLSDMRKQAMELAKGNFSRKVKKYGHDEIGQLATTFNHLTRELEDAQAMTEGERRKLASVIAYMTDGVIATNRNGAIILLNSPALELLNVSRETALEMPITSLLGLQENYTFEDLVEQQDSMLLEIERDDELTVLRVNFSVIQREHGKIDGLIAVIYDVTEQEKMDQERREFVANVSHELRTPLTTMRSYLEALAEGAWENKDIAPRFLMVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFEMTKEQHVEFIRNLPDRDLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLPYKEEQEDDWDEA", "sequence_length": 611, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "196c68064de4d2f787c7e4456fb931abe183f8e4ccda5f3acfcdb7eb548f8265", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q45614.json", "taxon_id": "224308", "uniprot_accession": "Q45614", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cuss-pf21085.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21085", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cuss-pf21085.yaml" } ], "pfam_ids": [ "PF00512", "PF00672", "PF02518", "PF21085" ], "protein_name": "Probable sensor protein PcoS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRFKISLTTRLSLIFSAVMLTVWWLSSFILISTLNDYFDNQDRDFLTGKLQLTEEFLKTETFRNKTDIKSLSEKINDAMVGHNGLFISIKNMENEKIVELYAKNSVVPAVLLNKSGDILDYMIQTEENNTVYRSISRRVAVTPEQGKSKHVIITVATDTGYHTLLMDKLSTWLFWFNIGLVFISVFLGWLTTRIGLKPLREMTSLASSMTVHSLDQRLNPDLAPPEISETMQEFNNMFDRLEGAFRKLSDFSSDIAHELRTPVSNLMMQTQFALAKERDVSHYREILFANLEELKRLSRMTSDMLFLARSEHGLLRLDKHDVDLAAELNELRELFEPLADETGKTITVEGEGVVAGDSDMLRRAFSNLLSNAIKYSPDNTCTAIHLERDSDCVNVMITNTMSGQVPANLERLFDRFYRADSSRFYNTEGAGLGLSITRSIIHAHGGELSAEQQGREIVFKVRLLMD", "sequence_length": 466, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ef053cb9827869ae1c6449ab1dee31c2cd59949334ddf6db4e36a2e42722e576", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q47457.json", "taxon_id": "562", "uniprot_accession": "Q47457", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyostelium discoideum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hamp-2-pf18947.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18947", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hamp-2-pf18947.yaml" } ], "pfam_ids": [ "PF00072", "PF00512", "PF00672", "PF02518", "PF18947" ], "protein_name": "Hybrid signal transduction histidine kinase J", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELELDELLNQCIHCCPHCKNKISISQLSACNLIKNRFYELNNKYNNFKNNNIYDIDCNNNSNLNNTNNNNNNNNNNDNNNSNNSFRNILNKDKDITNNNSHFNISDSFINFNNKIKNKSNKIKNGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGESYNLFLDSLLKSLETVKGGDFKSRVKSNEQLFTEKENKIISTYNEILNFQDSTVTEFKRIEKQVGKEGNVMSRAFLPNAVGSWEFCIEFVNNLIGDMIQPTEEVIKVITSVARGDLSQTINLELGQGRKLTGEFLRIAKVVNTMVSQLNSFSSEVTRVAREVGTDGKLGGQAVVTGVDGIWKDLTDNVNTMAANLTGQVREIALVTTAVATGDLSKKITLDVKGEIQELKLTINTMVDQLKSFSSEVTRVSREVGTEGILGGQAQVKGVDGVWKDLTDNVNTMAANLTGQVRSIAEVTTAVAEGDLSKNITIDAQGEILQLKNTINTMVQQLKGFSSEVTRVAREVGTKGILGGQAEVTGVGGVWKGLTDNVNTMAANLTGQVRSIAEVTTAVAKGDLSKNITIDAQGEILQLKNTINTMVDQLKSFSSEVTRVSREVGTEGILGGQAEVTGVDGVWKGLTDNVNTMAANLTGQVRSIAEVTTAVAKGDLSKNITIDAQGEILQLKNTINTMVQQLKSFSSEVTRVSREVGTEGILGGQAQVEGVGGVWKDLTDNVNTMAANLTGQVRSIAEVTTAVACGDLSKNITIDAEGEILQLKNTINTMVDQLKSFSSEVTRVAREVGTEGILGGQAQVEGLGVGGVWKDLTDNVNTMAANLTGQVRSIAEVTTAVAEGDLSKQVSINAQGEILQLKNTINTMVDQLKSFSSEVTRVSREVGTEGILGGQAQVKGVGGVWKDLTENVNTMAANLTGQVRSIAEVTTAVACGDLSKNITIDAKGEILQLKNTINTMVQQLKGFSSEVTRVSREVGTEGILGGQAQVEGVGGVWKDLTDNVNTMAANLTGQVRSIAEVTTAVACGDLSKKISIDAQGEICELKNTINTMVDQLKSFSSEVTRVAREVGTEGILGGQAEVKDVGGVWKGLTDNVNTMAANLTGQVRSIAEVTTAVACGDLSKKISIDVRGEFLELKITINTMVDLLNSFSSEVTRVALEVGTEGILGGQAQVEGVDGVWKYLTQNVNTMAANLTSQVREIANVTTAVANGDLSKKVNLDVRGEILQLKITINTMVDQLNSFSSEVTRVAREVGTEGMLGGQAQVEGVGGVWKDLTDNVNTMAANLTTQVRSIAEIAKAVTKGDFTRVISVDAKGEVNLLKLIINEMIHNLKETTLKNTLAKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLSMVQSSAGSLLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVPDSLIGDPGRLRQIVNNLVGNAIKFTSQGEVDLVVKVEKSLSCGEVVLKFSVIDTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGSTFEFTAQFPTSPNQLPLTEKLNDVHTLIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKATKTTKPFEFIFVDAQLGTSLIDMMVEKNMNHCKTKIIMLISGGGQRGYPDSSSNFITGYLSKPVSPSEIFDILTRQGITRQIPKQLCKKIQLTSEIFGDILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVASSQLRKFDLILMDVQMPHCGGFEATAQIRKREHEQGIHTPIIAMTAHALARDRVKCLEAGMDDYISKPINPDQLKAMIEKYLFISKSCNSYEQFQQLQAQKSANYINSTSYYGQLTPTTTTTTTTTTALPSPQKILSIEDDKNLNSNDNNEKDNNNQNNNNNQNDNNKNDNNQNDFDQIKTISNNKESGVGENKKTTRNTSDNERIPKKSDMFDGDFVVQPQLVNRSSSNNKKSNDINGKPQQSQQQPHQQEQQQDIYSSKHQQQSNSPPLANTKRKENDLSNSSIPASKKNNTKQ", "sequence_length": 2062, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5c37a29658751fe7eaab2b8e0f518b2901399ebf49f41309ed4ae4b1e6023dcf", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q54YZ9.json", "taxon_id": "44689", "uniprot_accession": "Q54YZ9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Candida albicans (strain SC5314 / ATCC MYA-2876)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hamp-2-pf18947.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18947", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hamp-2-pf18947.yaml" } ], "pfam_ids": [ "PF00072", "PF00512", "PF00672", "PF02518", "PF18947" ], "protein_name": "Histidine protein kinase NIK1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNPTKKPRLSPMQPSVFEILNDPELYSQHCHSLRETLLDHFNHQATLIDTYEHELEKSKNANKAFQQALSEIGTVVISVAMGDLSKKVEIHTVENDPEILKVKITINTMMDQLQTFANEVTKVATEVANGELGGQAKNDGSVGIWRSLTDNVNIMALNLTNQVREIADVTRAVAKGDLSRKINVHAQGEILQLQRTINTMVDQLRTFAFEVSKVARDVGVLGILGGQALIENVEGIWEELTDNVNAMALNLTTQVRNIANVTTAVAKGDLSKKVTADCKGEILDLKLTINQMVDRLQNFALAVTTLSREVGTLGILGGQANVQDVEGAWKQVTENVNLMATNLTNQVRSIATVTTAVAHGDLSQKIDVHAQGEILQLKNTINKMVDSLQLFASEVSKVAQDVGINGKLGIQAQVSDVDGLWKEITSNVNTMASNLTSQVRAFAQITAAATDGDFTRFITVEASGEMDALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQLSLDTELTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGALKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKEGKVSVSVKKSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQLIHLMGGEIWVTSEYGSGSNFYFTVCVSPSNIRYTRQTEQLLPFSSHYVLFVSTEHTQEELDVLRDGIIELGLIPIIVRNIEDATLTEPVKYDIIMIDSIEIAKKLRLLSEVKYIPLVLVHHSIPQLNMRVCIDLGISSYANTPCSITDLASAIIPALESRSISQNSDESVRYKILLAEDNLVNQKLAVRILEKQGHSVEVVENGLEAYEAIKRNKYDVVLMDVQMPVMGGFEATEKIRQWEKKSNPIDSLTFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQTINKCIHNINQLKELSRNSRGSDFAKKMTRNTPGSTTRQGSDEGSVEDMIGDTPRQGSVEGGGTSSRPVQRRSATEGSITTISEQIDR", "sequence_length": 1081, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "38cf8e21fee39e58e4252075b629950405a583d70fc704c7244aa37a2aa11eaf", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q5A599.json", "taxon_id": "237561", "uniprot_accession": "Q5A599", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain COL)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hisk-sensor-pf18698.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18698", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hisk-sensor-pf18698.yaml" } ], "pfam_ids": [ "PF00512", "PF00672", "PF02518", "PF18698" ], "protein_name": "Sensor protein SrrB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMSRLNSVVIKLWLTIILIVTTVLILLSIALITFMQYYFTQETENAIREDARRISSLVEQSHNKEEAIKYSQTLIENPGGLMIINNKHRQSTASLSNIKKQMLNEVVNNDHFDDVFDKGKSVTRNVTIKEKGSSQTYILLGYPTKAQKNSHSKYSGVFIYKDLKSIEDTNNAITIITIITAVIFLTITTVFAFFLSSRITKPLRRLRDQATRVSEGDYSYKPSVTTKDEIGQLSQAFNQMSTEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDKIEQGGKSGVVVTVRDMTNEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE", "sequence_length": 583, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c53bccb1e6912cafda9fb6322ed314cf673b92de39094f6e541e06b95f607fc7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5HFT1.json", "taxon_id": "93062", "uniprot_accession": "Q5HFT1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hbm-pf16591.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16591", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hbm-pf16591.yaml" } ], "pfam_ids": [ "PF00015", "PF00672", "PF16591" ], "protein_name": "Methyl-accepting chemotaxis protein McpQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYQWLAQSLGNVSVNRKLGLGFGLVLLLTLAITLTGWHGMDSIIDRGDKLGNISVIQQYTQELRIARQQYDRRRDDASLAELEKALSNLDRQVQLMLGQIEQPADHQRLEQQREAVRIYQQAFNELKQADQRREASRDVLGSSADKAVDLIGRVQRSLLQGANINQYQHAVDVSALLQQARFQVRGYTYSGNADYQQTALKAIDQALAELRALPAKVPAEHAASLDDAATAMGGYRDAVTQFGNAQLASEQALQRMVEQGTVLLQASQMMTASQTEVRDAAAAQAKTLLTVATVLALALGLLAAWAITRQIIIPLRQTLRAAERVASGDLTQSLQVQRRDELGQLQASMHRMTQGLRELIGGIGDGVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAMNQMTATVHEVARNAEQASEAALMADQQAREGDRVVGEAVAQIERLASEVVNSSEAMNLLKTESDKIGSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQQSTEEIEELIAGLQSGTQRVASVMDNSRQLTDSSVELTRRAGSSLETITRTVSSIQAMNQQIATAAEEQTAVAEEINRSVMNVRDISDQTSAASEETASSSVELARLGTHLQGLVGRFRL", "sequence_length": 638, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a268a69d8d45311ce5c5cccb1b5561a480e0eef705bfa3c114f572bd43b3deb2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q88D09.json", "taxon_id": "160488", "uniprot_accession": "Q88D09", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hbm-pf16591.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16591", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hbm-pf16591.yaml" } ], "pfam_ids": [ "PF00015", "PF00672", "PF16591" ], "protein_name": "Methyl-accepting chemotaxis protein McpS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSWFANISVNLKLGLGFGLVLVLTGLLALTGWTSLGSLIDRSNWMGDIGQLNKDLTDLRIARLQYMIANGDDTAAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVRIDVRGYIAENSSANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGADIVKRSDALYQIQLERRDIESTQARSLQAIATLLALLVGVLAAVLITRQITRPLQDTLVAVEKIASGDLTQHMRVTRRDELGVLQQGIARMGTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGANSQKVETDQVATAMHEMAATVQEVARNAEQASHAATGADDEARAGDRVVGEAIGQIERLAEDMHRSTEAMNLLQQESQKIGSVMDVIKSVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEELIASLQHGTQQVANAMQGSRALTDSSVELARKAGSSLESITSTVSSIQSMNQQIAAAAEQQSAVAEEISRSILNVRDVSEQTAAASDETAASSVELARLGGQLQTLVSQFRV", "sequence_length": 639, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc7bf0e6da09597f6544dc0a68563fe2cd499ba03a0ba5356cce0136ec6ccbdf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q88E10.json", "taxon_id": "160488", "uniprot_accession": "Q88E10", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cache-walk-pf23846.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cache-walk-pf23846.yaml" } ], "pfam_ids": [ "PF00512", "PF00672", "PF00989", "PF02518", "PF23846" ], "protein_name": "Sensor protein kinase WalK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKWLKQLQSLHTKLVIVYVLLIIIGMQIIGLYFTNSLEKELLDNFKKNITQYAKQLDVNIEKVYKDKDKGSVNAQKDIQDLLNEYANRQEIGEIRFIDKDQIIMATTKQSNRGLINQKVNDGSVQKALSLGQTNDHMVLKDYGSGKERVWVYNIPVKVDKQTIGDIYIESKINDVYNQLNNINQIFIVGTAISLFITVILGFFIARTITKPITDMRNQTVEMSKGNYTQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGILATDRRGRVRIANDMALKMLGLAKEDVIGYYMLGVLNLENEFSLEEIQENSDSFLLDINEEEGIIARVNFSTIVQETGFVTGYIAVLHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEGAWQDKELAPSFLSVTREETERMIRLVNDLLQLSKMDNESDQITKEIIDFNMFINKIINRHEMAAKDTTFVREIPQQTIFAEIDPDKMTQVFDNVITNAMKYSRGEKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEIIEDGDWDE", "sequence_length": 610, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b83df13dd157199b7838a3c933764467d1e6b5dbc25d72bd0534d1ed72f496f8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CU87.json", "taxon_id": "176280", "uniprot_accession": "Q8CU87", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain MW2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hisk-sensor-pf18698.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18698", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hisk-sensor-pf18698.yaml" } ], "pfam_ids": [ "PF00512", "PF00672", "PF02518", "PF18698" ], "protein_name": "Sensor protein SrrB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMSRLNSVVIKLWLTIILIVTTVLILLSIALITFMQYYFTQETENAIREDARRISSLVEQSHNKEEAIKYSQTLIENPGGLMIINNKHRQSTASLSNIKKQMLNEVVNNDHFDDVFDKGKSVTRNVTIKEKGSSQTYILLGYPTKAQKNSHSKYSGVFIYKDLKSIEDTNNAITIITIITAVIFLTITTVFAFFLSSRITKPLRRLRDQATRVSEGDYSYKPSVTTKDEIGQLSQAFNQMSTEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDKIEQGGKSGVVVTVRDMTNEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE", "sequence_length": 583, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c53bccb1e6912cafda9fb6322ed314cf673b92de39094f6e541e06b95f607fc7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NWF3.json", "taxon_id": "196620", "uniprot_accession": "Q8NWF3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hbm-pf16591.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16591", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hbm-pf16591.yaml" } ], "pfam_ids": [ "PF00015", "PF00672", "PF16591" ], "protein_name": "Methyl-accepting chemotaxis protein McpK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYDWWVLQLAKLSVSRKLMVGFGVLLALLLLVVISSNRTLTHQTALSEQLAEVASLMEQTQQAEQGRLAFEAGSDPRQAEQVRQTLAGMLQRLQALRDSELDPAALAHQVEAIEAYRKAFDDLAAADQQRSAARGVLVGTAQQALDSFARLEELMDASLAQQAGDPQALQRSRAVADLHQQLLMVRYQVRGYVFERSDKAEQAAFAAFDALRQAATTLRGQLPGEADAALEQAMGSLQGYRGGIEQFRAGVIRTRQAQQAMQSSTQDMARAGRTLTEAGRQLRESTASRDRASLWLIAALALAFGCVAGWAINRQIVRPLDEALAQAEAIAAGDLGKRPQNPLTLQRRDELGQLQRVMQRMGDSLRELVGRISDGVSQLASSAEELSAVTEQTRAGVNSQKVETDQVATAMHEMAATVQDVARNAELASQAARQADEEARQGDAVVDQAVTRIERLASEMDVSSEAMARLKNESEQIGSVLDVIKSVAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRGLAQRTQQSTAEIEGLIQRLQQGAGEAAERLENSRSLTASTVELARRAGAALDSITRTVSDIQNMNLQIATAAEQQSTVAEEINRSVLSVRDVAEQSAAASEQTAASSGELARLGTQLQAQVGRFRL", "sequence_length": 647, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bccf75f6372a0070892deaed34b945409fd6e720cf862ea084f0ff0c094a5bd5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HUB1.json", "taxon_id": "208964", "uniprot_accession": "Q9HUB1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chase5-pf17149.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17149", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chase5-pf17149.yaml" } ], "pfam_ids": [ "PF00072", "PF00512", "PF00672", "PF01627", "PF02518", "PF17149" ], "protein_name": "Sensor histidine kinase AruS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAGRPGTGCGDHPLLRLSGIPADFLERRPAGPGAGAGAGEAAVRRAGLPGRGGGAGQLAALPARRRRRTGRPDTGLPHARARSRPGVFRRAGAARGGGDLLQPPAAGAHPIPRRPRRLSRRAVVRRKLRGGLRPLRRPPRQRRMGFRQPTELRQAGAPAHRLHRPRTTHRHAVRRAPGRRREHPCAARTADGGLPAGGGLAALAAGGEDGRDRPGPAWLSRRRQHPALAGRQRARLSAPRRQPRGRLVSGHGGVLARRLLWRVLLFSLCFTVLAGAVQLFFEYRREMREIEARLELIRSGYLASFERSLWDLNQEQLNVQLRGLGDFPDIARVSLQSADFNLLQGDQRPRGMLRVERFPLSYQPPGGERRQLGELEIAIDLAAVYRRLVSGGLASLLWMGSFLCGLAVALSWLFHSLVTRHLWRMSEFAGHIAEGDLQQPLRLDKVDRERDEIDAVAAALEDMRQALRTDRRRRDADRDELRRQVERRTASLRRAKDQAEAADRAKSRFLATMSHEIRTPLNGILGMAELLREASLGERDRQRLRALATAGEGLLAILNEVLHFARLEEAPDVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVHDGHRGAEQFLRQVLTNLLGNAVKFTEAGEVRVRVERLARSAGSERLRLSVADDGIGIPEEMRERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVESRVGQGSTFWFEIELALASLSGATPPAASVSALEVLLVEDVALNREVAQGLLERDGHRVMLAEDAGPALALCRQRRFDLILLDMHLPGMAGLELCAGIRRQLDGLNRATPIFAFTASIQPDMVRRYFAAGMQGVLGKPLRMDELRRALGEVGTSVPALAVDAALDRQMLETHRRLLGRHKLAGLLGNLLGSLDEQLPLLAEALDQADLAEAANIAHRLSGSCHSMGLVALGAGLGELEREALGAAGVDPRAWGARLGSLRRDGAEALRRAGFLGEADSAAG", "sequence_length": 998, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "61ae1d481aa71f94a6d644f90b9d1d85c7aa2ac9a85495487b63f53eb7a92e64", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HUI3.json", "taxon_id": "208964", "uniprot_accession": "Q9HUI3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dcache-1-pf02743.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02743", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dcache-1-pf02743.yaml" } ], "pfam_ids": [ "PF00015", "PF00672", "PF02743" ], "protein_name": "Methyl-accepting chemotaxis protein PctB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIKSLKFSHKILLAAALVVIATFSLFTLYNDSLQRASIREDLEDYLHEMGEITASNVQNWLSGRILLIENLAQTLARDHSPETTQALLEQPLLGSTFLFTYLGQTDGTYTARPTSDLPADYDPRRRPWYNAATSAGQTTLTEPYMEPAIHELVLTIASPARQGGQPFGVVGGDLSLQTVVKIINSLDFGGMGYAFLVSGDGKILVHPDKDQVMKSLSDVYPRNTPKIGSGFSEAELHGNTRILSFSPVKGLSGLDWYIGISVDKDKAYAMLTKLRTSAIVAALIAVVAIVLLLGMLIRVLMQPLTDMGRAMQDIAQGEGDLTKRLKVTSNDEFGALAISFNRFVERIHESIREVAGTARQLHDVAQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEIARNAADASHHASDANHQAEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVNIGQILEVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRAQESAQQIQKMIEELQIGAQEAVSTMTESQRYSLESVEIANRAGERLSSVTGRIAEIDGMNQSVATATEEQTAVVDSLNMDITEINTLNQEGVENLQATLRACGELETQAGRLRQLVDSFKI", "sequence_length": 629, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c7c2873386d697779b63cfa8bfd4e0c1a48a926aef1e500ed6ff8c3697a599f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HW91.json", "taxon_id": "208964", "uniprot_accession": "Q9HW91", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chase8-pf17152.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17152", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chase8-pf17152.yaml" } ], "pfam_ids": [ "PF00672", "PF00990", "PF17152" ], "protein_name": "Diguanylate cyclase TpbB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNRRRRYTGSNPSLRRVLYRAHLGVALVAVFTAGLAVTLVGLLTLRAYADPNQQLIARSISYTVEAAVVFGDAQAAEESLALIASSEEVSSAIVYDRQGQTLASWHRESTGPLHLLEQQLAHWLLSAPTEQPILHDGQKIGSVEVKGSGGSLLRFLLTGFAGMVLCLLLTALGAFYLSRRLVRGIVGPLDQLAKVAHTVRRERDFEKRVPEAGIAELSQLGEDFNALLDELESWQARLQDENASLAHQAHHDSLTSLPNRAFFEGRLSRALRDANEHREQLAVLFIDSDRFKEINDRLGHAAGDTVLVNIAMRIRGQLRESDLVARLGGDEFAVLLAPLASGADALRIADNIIASMQAPIRLSDGSTVSTSLTIGIALYPEHADTPAALLHDADMAMYIAKRQARGSRRLAELNDPRILQEEKEIDSATPEAPPK", "sequence_length": 435, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2d9f9e30121404edaafb806c13ee9d4ef2f72665e5b18bed389e16263b0a6efd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9I4L5.json", "taxon_id": "208964", "uniprot_accession": "Q9I4L5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas putida", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/4hb-mcp-1-pf12729.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12729", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/4hb-mcp-1-pf12729.yaml" } ], "pfam_ids": [ "PF00015", "PF00672", "PF12729" ], "protein_name": "Methyl-accepting chemotaxis protein NahY", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQQFTIRTRLLMLVGAMFIGFITIELMGFSALQRGVASLNTVYLDRVVPLRDLKTIADLYAVKIVDSSHKARSGRMTYAQAEQEVKDAGRQIDMLWHAYQKTKKIDEEQRSVDALAKLVDEAQDPIERLKGILERGDKAALDTFVENEMYPLIDPLSEGLSHLTQIQVEESKRAYDAAVVLYDSSRTMLALLLLGILICGGVFATRLIRSIIHPLTTLKDAAARVALGDLSQSIQVSGRNEVTDVQQSVQAMQANLRNTLQDIQGSAAQLAAAAEELQTATESTAQGIHRQNDEMQMAATAVTEMSAAVDEVADNANRTSNASHEAMDLADGGRKQVMLTRETIDRLSGKLNETTRTVFRLAEEASNIGRVLDVIRAIAEQTKLLALNAAIEAAHAGEAGRGFAVVADEVRNLAQRTQTSTQEIERMISAIQSVTQEGVRDVQQSCEFAARSQTMSSEADQALTLIAERITEINGMNLVIASAAEEQAQVAREVDRNLVAISDISEQSTAGVQQTSEASEELARLAANLNNLVNRFSM", "sequence_length": 538, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "57a5d58d48b334370ea6ea7988a6e9551565f36d9667f58078b4492dc6213fae", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z429.json", "taxon_id": "303", "uniprot_accession": "Q9Z429", "uniprot_release": "2026_03" } ], "pfam_id": "PF00672", "short_name": "HAMP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 23, "discovery_scanned": true, "example_count": 23, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-defense-response-to-oomycetes-go1902289.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1902289", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-defense-response-to-oomycetes-go1902289.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/eama-domain-ipr000620.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR000620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/eama-domain-ipr000620.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:F4I5D5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00892" ], "protein_name": "WAT1-related protein At1g70260", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "92265b70272a5e85b0dc43b5d0cc7a596915095522b5f1935b66bef6796da280", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEVKVRRDELVPFVAMAIMEACTIALTIMAKTALTGGMSPFVFVVYTNAFGSILLLPFSFLFHRNERTEQSIFSWPLLVRVFFLGFTGIFMFQNLAFVGLRFSSPIVVCAMGLQIPSFSFLLSIILGRSKLDWRNTSTRAKLMGTIVSLSGAFVEELYKGPFIRPASSASPNRFLKSVPKLLVYYNLPDNWFLGCIFLAVAVFSVSLFNVVQTGTVKKYPHVMKVASFYSIVGTIQCLLFSLFMERDLSAWKIQPNFDLYLIIATGTFGSVIRTSVHVKCTQMKGPYYVPLFKPFGIFWATLFGTSFFVNSLHYGSVLGAAIAGVGYFTVSWGQLKESEEKQSSNEERKSIKTIHHRDEDEYKVPLLINQEESPV", "sequence_length": 375, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "92265b70272a5e85b0dc43b5d0cc7a596915095522b5f1935b66bef6796da280", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4I5D5.json", "taxon_id": "3702", "uniprot_accession": "F4I5D5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/eama-family-transporter-rard-tigr00688.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00688", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/eama-family-transporter-rard-tigr00688.yaml" } ], "pfam_ids": [ "PF00892" ], "protein_name": "Uncharacterized transporter YojE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQHAETKKGVIYTAVSFIMWGLFPLYWKLLEQLPALDILAHRIIWSFVFMCIVLFFLRQWKIGWQELRSLKKNGGILSLFLASILISINWFVYIWAVNHGFLLEASLGYYINPLVSVLLGILFLKEKLNRLQLVAVSIAAAGVIISAFQYGSIPYVALLLAFSFGLYGLSKKRTSLPSAIGLTLETFMIMPIALGYLLFSGHVQPAGAESGGTWLLLFLAGVFTALPLLLFAEGAKRLPLYQVGILQYIAPTITLLIGLFVYHEPFSSSKAFTFSCIWAALLLFTFSQVKWKRASKSH", "sequence_length": 298, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e573457ed3035fca6ea9d1bdcb39ab63916049bd535034ef1e5a766ac37b750", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O31859.json", "taxon_id": "224308", "uniprot_accession": "O31859", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/eama-domain-ipr000620.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR000620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/eama-domain-ipr000620.yaml" } ], "pfam_ids": [ "PF00892" ], "protein_name": "WAT1-related protein At2g39510", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALKTWKPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIRPKMTLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNVKKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPWANPHDIHQDSSNTGVKQDLTKGASLIAIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPSAWAIHLDSKLLAAVYGGVICSGIGYYVQGVIMKTRGPVFVTAFNPLSMVIVAILGSIILAEVMFLGRILGAIVIVLGLYSVLWGKSKDEPSSSFSDMDKELPLSTPQIVLPSKANAKMDTNDASVVISRPNTNESV", "sequence_length": 374, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea40cc0237069eac4d674c57fae84ec09e483f33b1dcf5f34bd688e7817075d4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O80638.json", "taxon_id": "3702", "uniprot_accession": "O80638", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/l-homoserine-transmembrane-transporter-activity-go0042970.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042970", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/l-homoserine-transmembrane-transporter-activity-go0042970.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/threonine-efflux-transmembrane-transporter-activity-go0015565.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015565", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/threonine-efflux-transmembrane-transporter-activity-go0015565.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/l-homoserine-transmembrane-transport-go0042968.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042968", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/l-homoserine-transmembrane-transport-go0042968.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/threonine-transport-go0015826.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015826", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/threonine-transport-go0015826.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/threonine-homoserine-exporter-rhta-nf007823.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/threonine-homoserine-exporter-rhta-nf007823.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/eama-domain-ipr000620.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR000620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/eama-domain-ipr000620.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AA67", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00892" ], "protein_name": "Threonine/homoserine exporter RhtA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "390fae83f923b885cde9c8b2ea3e979e5e6f57cce4fd9b8c95b4fc882258a9c0", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAASMGSTLTVRKESKIKELDIN", "sequence_length": 295, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "390fae83f923b885cde9c8b2ea3e979e5e6f57cce4fd9b8c95b4fc882258a9c0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AA67.json", "taxon_id": "83333", "uniprot_accession": "P0AA67", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/carboxylate-amino-acid-amine-transporter-tigr00950.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/carboxylate-amino-acid-amine-transporter-tigr00950.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/drug-metabolite-exporter-yeda-nf008432.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008432", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/drug-metabolite-exporter-yeda-nf008432.yaml" } ], "pfam_ids": [ "PF00892" ], "protein_name": "Uncharacterized inner membrane transporter YedA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRFLAAGILLLAFLLLRGHKLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRLFGIKTRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSISWAFGSVYGSRITLPVGMMAGAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYLALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVIVFAVVLVTLGKYLFPAKPVVAPVIQDASSE", "sequence_length": 306, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "316001eae29c07b4b67710ecdd5c58342d2a8f6c93189be35ff70d5dbda04d60", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AA70.json", "taxon_id": "83333", "uniprot_accession": "P0AA70", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/sulfur-amino-acid-transmembrane-transporter-activity-go0000099.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000099", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/sulfur-amino-acid-transmembrane-transporter-activity-go0000099.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/sulfur-amino-acid-transport-go0000101.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000101", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/sulfur-amino-acid-transport-go0000101.yaml" } ], "pfam_ids": [ "PF00892" ], "protein_name": "Probable cystine transporter YijE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAAGKSNPLAISGLVVLTLIWSYSWIFMKQVTSYIGAFDFTALRCIFGALVLFIVLLLRGRGMRPTPFKYTLAIALLQTCGMVGLAQWALVSGGAGKVAILSYTMPFWVVIFAALFLGERLRRGQYFAILIAAFGLFLVLQPWQLDFSSMKSAMLAILSGVSWGASAIVAKRLYARHPRVDLLSLTSWQMLYAALVMSVVALLVPQREIDWQPTVFWALAYSAILATALAWSLWLFVLKNLPASIASLSTLAVPVCGVLFSWWLLGENPGAVEGSGIVLIVLALALVSRKKKEAVSVKRI", "sequence_length": 301, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a76f81835d4d050d38dde19f8bdeaca2b87cdcd3e72bd7933425d77ab45427bb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ABT8.json", "taxon_id": "83333", "uniprot_accession": "P0ABT8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/carboxylate-amino-acid-amine-transporter-tigr00950.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/carboxylate-amino-acid-amine-transporter-tigr00950.yaml" } ], "pfam_ids": [ "PF00892" ], "protein_name": "Biotin transporter", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALLIITTILWAFSFSFYGEYLAGHVDSYFAVLVRVGLAALVFLPFLRTRGNSLKTVGLYMLVGAMQLGVMYMLSFRAYLYLTVSELLLFTVLTPLYITLIYDIMSKRRLRWGYAFSALLAVIGAGIIRYDQVTDHFWTGLLLVQLSNITFAIGMVGYKRLMETRPMPQHNAFAWFYLGAFLVAVIAWFLLGNAQKMPQTTLQWGILVFLGVVASGIGYFMWNYGATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPTFITGALVILASLWVHRKWVAPRSSQTADDRRRDCALSE", "sequence_length": 299, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb1615bef9efd48da071341d08f121da7a30a0149530a8e70ac0e81bf5096cbb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADP5.json", "taxon_id": "83333", "uniprot_accession": "P0ADP5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/eama-family-transporter-rard-nf011959.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF011959", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/eama-family-transporter-rard-nf011959.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/eama-family-transporter-rard-tigr00688.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00688", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/eama-family-transporter-rard-tigr00688.yaml" } ], "pfam_ids": [ "PF00892" ], "protein_name": "Protein RarD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRRTSK", "sequence_length": 296, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d36ae6a20a48a2fb9cee0a8e4a01ee2a350efa777e3c25158f63ff3d36d48923", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P27844.json", "taxon_id": "83333", "uniprot_accession": "P27844", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/l-cysteine-export-across-plasma-membrane-go0033228.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0033228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/l-cysteine-export-across-plasma-membrane-go0033228.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/o-acetylserine-cysteine-exporter-nf008523.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008523", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/o-acetylserine-cysteine-exporter-nf008523.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P31125", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00892" ], "protein_name": "Probable amino-acid metabolite efflux pump", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6e01c8213dab7e573c5dc1db5599b0e494b11845aed28da3cd6514cbb4150416", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSRKDGVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFAQFAFLFCAINFGMPAGLASLVLQAQAFFTIMLGAFTFGERLHGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVIWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMTGLYINVFGLRWRKAVKVGS", "sequence_length": 299, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6e01c8213dab7e573c5dc1db5599b0e494b11845aed28da3cd6514cbb4150416", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P31125.json", "taxon_id": "83333", "uniprot_accession": "P31125", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/carboxylate-amino-acid-amine-transporter-tigr00950.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/carboxylate-amino-acid-amine-transporter-tigr00950.yaml" } ], "pfam_ids": [ "PF00892" ], "protein_name": "Uncharacterized inner membrane transporter YicL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSQMSSQFLTMTRLIFAGLILLTLSFVHGDKIFSIINNHKDAISLLIFSVVGALTVQLTFLLTIEKSNAATATVLQFLSPTIIVAWFSLVRKSRPGILVFCAILTSLVGTFLLVTHGNPTSLSISPAALFWGIASAFAAAFYTTYPSTLIARYGTLPVVGWSMLIGGLILLPFYARQGTNFVVNGSLILAFFYLVVIGTSLTFSLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGITFTLPDWLGTLLILSSVILISMDSRRRARKINRPARHK", "sequence_length": 307, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aeff8bbcda24bf2701104a1b0db5e2747f9633411a61f97d3814c404f289895d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P31437.json", "taxon_id": "83333", "uniprot_accession": "P31437", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/carboxylate-amino-acid-amine-transporter-tigr00950.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/carboxylate-amino-acid-amine-transporter-tigr00950.yaml" } ], "pfam_ids": [ "PF00892" ], "protein_name": "Uncharacterized transporter YwfM", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKGNIYSLFVLIAAFFWGTTGTVQALAPESATPLAFGAFRLLIGGSAMLLAVWISRELHVKNWAWPLVFLAAVCMACYQPLFFTAVKETGIAVGTVIAIGSAPIIAGTLEWAVLKKRPRNSWWIATVLALAGCWLLFSDSSNVRIDVAGVLMALGAGASFAGYTLISKAMMKTQPPRATSAVVFMISAILLTPLLWQLDISWILTPRGLGTSLYIGLIATCAAYFLFAKGLTGVPASAAVTLSLAEPLTASLLGVFFIGEMLSPSSWLGIALMMLGLLVISAAPRKQKTAEAAHMS", "sequence_length": 296, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3dd66f3a6787407547eef0e7f485c6c039545263807b80fad0fc9b1360a14716", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P39649.json", "taxon_id": "224308", "uniprot_accession": "P39649", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/aromatic-amino-acid-dmt-transporter-yddg-nf008676.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008676", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/aromatic-amino-acid-dmt-transporter-yddg-nf008676.yaml" } ], "pfam_ids": [ "PF00892" ], "protein_name": "Aromatic amino acid exporter YddG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLSGLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEICLALSLGYAATHHQAIEVGMVNYLWPSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGDNGLHYDEIINNITTSPLSYFLAFIGAFIWAAYCTVTNKYARGFNGITVFVLLTGASLWVYYFLTPQPEMIFSTPVMIKLISAAFTLGFAYAAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGALMVCGGSLLCWLATRRG", "sequence_length": 293, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "84dca84e98dc6234bbdfc4357dd5eaf0f188fe936e9761ec00998b21ffbb3a03", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P46136.json", "taxon_id": "83333", "uniprot_accession": "P46136", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/amino-acid-export-across-plasma-membrane-go0032973.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032973", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/amino-acid-export-across-plasma-membrane-go0032973.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/eama-domain-ipr000620.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR000620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/eama-domain-ipr000620.yaml" } ], "pfam_ids": [ "PF00892" ], "protein_name": "Uncharacterized transporter YdeK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKTTNGWINGFIGVLIFSGSLPATRLAVSDFDPLFLTVCRAAIAGVLAGGLLLIFRQQHPAKRDLISLLVVAFGVVIGFPLLTALALQHVTSAHAIVFIGLLPLATAVFGVLRGGERPRPVFWIFSAAGSLLVAGFALIQGGGSSPLGDAYMLASIVVCGLGYAEGAKLSRRLGNWQVISWALVLSLPLMLPLSFFFTPDSWSAIGVPALLSLAYVSLFSMLIGFVFWYRGLAQGGIAAVGQLQLLQPFFGLLLASVILHEKVGWALVAVNIAVIMCVAAARRFAK", "sequence_length": 287, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5d5de51c93c2af3d6b260b40146f6f9a5a6cb6c27c3e4d9e1e1cdbfd8b8dff50", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P96668.json", "taxon_id": "224308", "uniprot_accession": "P96668", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/eama-pf00892.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF00892", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/eama-pf00892.yaml" } ], "pfam_ids": [ "PF00892" ], "protein_name": "Solute carrier family 35 member G1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRPQDSTGVAELQEPGLPLTDDAPPGATEEPAAAEAAGAPDRGRCWLCLSSPCCSRTEPEAKKKAPCPGLGLFYTLLSAFLFSVGSLFVKKVQDVHAVEISAFRCVFQMLVVIPCLIYRKTGFIGPKGQRIFLILRGVLGSTAMMLIYYAYQTMSLADATVITFSSPVFTSIFAWICLKEKYSPWDALFTVFTITGVILIVRPPFLFGSDTSGMEESYSGHLKGTFAAIGSAVFAASTLVILRKMGKSVDYFLSIWYYVVLGLVESVIILSVLGEWSLPYCGLDRLFLIFIGLFGLGGQIFITKALQIEKAGPVAIMKTMDVVFAFIFQIIFFNNVPTWWTVGGALCVVASNVGAAIRKWYQSSK", "sequence_length": 365, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3af5509edfa0608bb7b6be92b146c09e43cbb5e69b7a7681d7b2c892c1807493", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2M3R5.json", "taxon_id": "9606", "uniprot_accession": "Q2M3R5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "Q47377", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/l-ara4n-modified-lipid-a-biosynthesis.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY0-1338", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/l-ara4n-modified-lipid-a-biosynthesis.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/carbohydrate-derivative-transmembrane-transporter-activity-go1901505.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1901505", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/carbohydrate-derivative-transmembrane-transporter-activity-go1901505.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/carbohydrate-derivative-transport-go1901264.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1901264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/carbohydrate-derivative-transport-go1901264.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/response-to-iron-iii-ion-go0010041.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010041", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/response-to-iron-iii-ion-go0010041.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"8d9aad9d31b8bff567f9f0cc8d1841c2ea94df0e70973ee28cba7803f6ded3e4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9AVE6.json", "taxon_id": "39947", "uniprot_accession": "Q9AVE6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/tat-protein-transport-complex-go0033281.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0033281", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/tat-protein-transport-complex-go0033281.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", 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"data/traits/sequence/conservation/interpro/sec-independent-periplasmic-protein-translocase-conserved-site-ipr019820.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019820", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/sec-independent-periplasmic-protein-translocase-conserved-site-ipr019820.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tatc-pf00902.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF00902", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tatc-pf00902.yaml" }, 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"path": "data/traits/structure/homologous_superfamily/cath/2-30-30-60-2-30-30-60.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.30.30.60", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-30-30-60-2-30-30-60.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:F4IME1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00924" ], "protein_name": "Mechanosensitive ion channel protein 7", "registry_source": { "commit": 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"record_id": "Pfam:PF25237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/msl2-3-pf25237.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-10-287-1260-1-10-287-1260.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.287.1260", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-10-287-1260-1-10-287-1260.yaml" } ], "pfam_ids": [ "PF00924", "PF24956", "PF25237" ], "protein_name": "Mechanosensitive ion channel protein 2, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALYGTLQLSHSLGLCRNQRFCNPENSAMRRRLHISNGPLSLGVPLGQHGFSNILLSNYLRRPICSVPCRTTAFRCHSFSASGKAIEPAVKAVTVVLTKSHGLMQQFPFVYKLVPAVALLVFSLWGLVPFARQGRNILLNKNDNGWKKSGTYHVMTSYVQPLLLWLGALFICRALDPVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQKLFSETSNPSDTRNMGFQFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQALSILISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFGESMYGGVTSRRPLMLIEPAYKINGEDKSKSQNRAAKPTAEQENKGSNPKSKETSSPDLKANVKVGESPVSDTNKVPEETVAKPVIKAVSKPPTPKDTETSGTEKPKAKRSGGTIKSTKTDETDSSTSSASRSTLEENIVLGVALEGSKRTLPIEEEIHSPPMETDAKELTGARRSGGNGPLVADKEQKDSQSQPNSGASTEP", "sequence_length": 673, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb12a3bd48e73e90bfb757c6524e61d7bb95a43188d4e161bbcef9025992e2a3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q56X46.json", "taxon_id": "3702", "uniprot_accession": "Q56X46", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mscs-porin-pf12795.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12795", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mscs-porin-pf12795.yaml" } ], "pfam_ids": [ "PF00924", "PF12794", "PF12795", "PF21082", "PF21088" ], "protein_name": "Uncharacterized MscS family protein HI_0195.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIRKLMKIPPFFTALFASAMFTLSVSQGVLAANSTNVLPTEQSLKADLANAQKMSEGEAKNRLLAELQTSIDLLQQIQAQQKINDALQTTLSHSESEIRKNNAEIQALKKQQETATSTDDNAQSQDYLQNSLTKLNDQLQDTQNALSTANAQLAGQSSISERAQAALTENVVRTQQINQQLANNDIGSTLRKQYQIDLQLIDLKNSYNQNLLKNNDQLSLLYQSRYNLLNLRLQVQQQNIIAIQEVINQKNLQQSQNQVEQAQQQQKTVQNDYIQKELDRNAQLGQYLLQQTEKANSLTQDELRMRNILDSLTQTQRTIDEQISALQGTLVLSRIIQQQKQKLPTNLNIQGLSKQIADLRVHIFDITQKRNELYDLDNYINKVESEDGKQFTEAERTQVKTLLTERRKMTSDLIKSLNNQLNLAISLELTQLQITQISDQIQSKLEQQSFWVKSNNPINLDWVKMLPRALIEQFNGMLKKLGFPTNYDNLPYLLMYFLGLFIVGGAIFKFKNRIKQQLNKINREIHRLDTDSQWSTPLALLLTAFLTLSSTLWFLAVCQMIGFFFFKNPEEFWHWSFSMAGYWWFFTFWISLFRPNGIFVNHFESSKENAQRFRGVIQRIIVVVVLLLNTSVFSNVTDAGLANDVLGQINTIAALIFCAAIIAPRFNRVLRSYEPETNKHHWLIRIVQIGFRLIPVGLIVLIVLGYYYTALNLIEHFIHSYIAWCVWWLVRNTIYRGITVSSRRLAHRRLAEKRRQKALENNYENISSDDVVAVGEPEESLALNDVRSQLLRFVDLFIWTALLGIFYYVWSDLVTVVSYLREITLWQQTTTTDAGTVMESITLFNLLVALVIVGITYVLVRNISGILEVLIFSRVNLSQGTPYTITTLLTYIFIAIGGAWAFATLGMSWSKLQWLFAALSVGLGFGMQEIFANFVSGIILLFERPIRVGDVVTINEVSGTVAKIRIRAITLIDFDRKEVIVPNKSFVTGQVTNWALSNTMTRLVISVGVAYGSDLTLVRQLLLQAADEQPTILRDPKPSAYFLTFGASTLDHELRVYVEQVGDRTSTTDALNRRINELFAEHNIDIAFNQLDVFIKNNDTGEEIPFVDVKK", "sequence_length": 1111, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6380059a42de6ce9ac743e42a9687d5cb242808744cd4c247d8b7c79be92d1c6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57362.json", "taxon_id": "71421", "uniprot_accession": "Q57362", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q57634", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00924", "PF05552", "PF21082", "PF21088" ], "protein_name": "Small-conductance mechanosensitive channel MscMJ", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "14746cd38ea33b8fdaf06298d502b440c44c14b083cb87cdcb8f9848e4b3753a", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNMEIFGNSISNILIFVVITLLGIFIGKIVDKIVRNYLKKIIDKTKTKFDDIILESIDLPIIVLVVTLFFYFGLRFLILPDYILKLIDEAVKVVVILSATYFAVKFIDGIFEHYLIPLTEKTETELDEHIIKPLKKVVKILTILLGILTALSSVGYDITALLAGLGVGGLALALAMQDTIKNFIAGILILIDKPFSLGHWVKVKGAEGIVEEIGIRSTRIRTFDYTLITIPNSELLDSAIENLTVRDRRRVLMTIGLTYNTPVEKIKRAKEIIKEIVENHPATLPPYRVHFREYGDWSLNLRVEYFVRNMGFDYYLNAVDEINLKIKEEFEKEGIEMAFPTYTVYLEKDN", "sequence_length": 350, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "14746cd38ea33b8fdaf06298d502b440c44c14b083cb87cdcb8f9848e4b3753a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57634.json", "taxon_id": "243232", "uniprot_accession": "Q57634", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mechanosensitive-ion-channel-mscs-c-terminal-domain-ipr049278.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049278", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mechanosensitive-ion-channel-mscs-c-terminal-domain-ipr049278.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mechanosensitive-ion-channel-transmembrane-helices-2-3-ipr049142.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049142", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mechanosensitive-ion-channel-transmembrane-helices-2-3-ipr049142.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ms-channel-1st-pf21088.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21088", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ms-channel-1st-pf21088.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ms-channel-3rd-pf21082.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21082", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ms-channel-3rd-pf21082.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/mechanosensitive-ion-channel-mscs-transmembrane-2-ipr011014.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011014", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/mechanosensitive-ion-channel-mscs-transmembrane-2-ipr011014.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-10-287-1260-1-10-287-1260.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.287.1260", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-10-287-1260-1-10-287-1260.yaml" } ], "pfam_ids": [ "PF00924", "PF21082", "PF21088" ], "protein_name": "Uncharacterized MscS family protein MJ0700", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIDNKLKLVIKVVLLIFLLHSLMSIFNLETYIKILAKYQNQIMIIAIIILSGLIIVDIASEVFKKYARTREEKAGEYLTLNYIFKYLVYVCVTLMIFGVIYQNVSSLVVSVGLIGAAVTYALQKPILNFAGWIIILYTRTIKIGDRIFIKNMGAGDVFDIDTQHIYLSELTTDTFEPTGRVLIIPNSYIFTASIENLTKGSPYIWDNIVVHFTLNSNINKAEKIVFESADEVIGNLMRELYEKWSKRKYLISRKLSDKPVVRVGITRSSFYIKALYLVNVYEKAKIRSEINKRILEKVNKENDVKLAYPHIKAVIETENKFKNT", "sequence_length": 324, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bcf522d0b502f2ea5acc7fa2681702c34139c70aab70d806148738b76122ca04", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58111.json", "taxon_id": "243232", "uniprot_accession": "Q58111", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mechanosensitive-ion-channel-protein-msy1-2-like-transmembrane-domain-ipr058650.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR058650", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mechanosensitive-ion-channel-protein-msy1-2-like-transmembrane-domain-ipr058650.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/msy1-pf25886.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25886", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/msy1-pf25886.yaml" } ], "pfam_ids": [ "PF00924", "PF25886" ], "protein_name": "Mechanosensitive ion channel protein 9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAERRVSNGEEVVINVSDKEDSKDPRASPSFNPLASPDSDAGIEKSKPVPPISIPTPEIYKFSGSVHKPPKIPSPEGLVRRKSLSRSIYSKPKSRFGEQQSFRYDSTREENGGRSLREQFGAGSFARGSFDRASPNNKSNRSVASAALSKVAEEEPDENEEIYKKVKLHRVKRSGMKPLAFLELVVFMAILGALIVSLTIDVVNKHTIWGLEFWKWCVLVMVTLSGMLVTNWFMHFVVFIIEKNYLLRKKVLYFVHGLKKNVQVFIWFSLVLIAWICLFDGDVKRTRKTKRFLDFITWTIVSLLVGSILFLVKTFALKVLASKFNVRNFFERIQESVFHQYVLQTLSGPPLIEEAENVGRVPSTGHLSFTRTKDGKVKDKKVIDMGKVHRMKQEKVSAWTMRVLIEAVGTSGISTISSTLDEVNNKKERTDKEITNEMEAVAAAYDVFNNVAKPNHNYIEEDDLLRFMIKEEVDLVLPLIEDADTGKITRKTFTEWVVNVYTSRKTIGHSLNDTKTAVKQLDKLITGILTVITFIVWMVLLDIASTKLLLVFSSQFLGLAFMIGSTCKNIFESFMFVFVMHPYDVGDRCVVDGVMLLVEEIDLLTTVFLKIDNEKVFYPNSVLISKPISNFYRSPDMGDYVDFGIAFSTPAEKIGCLKGKIGEYLVANSQHWYPEAQVMVRAIENMNKLVLNILVQHTINFQVYVEKSLRRTALIIAIKRILEDLEIDYTLLPQDVNLTGHK", "sequence_length": 742, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f90be81776eb512e943c651943b834b1b1e8f9346d0a1f9b1246a3ee2023b782", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q84M97.json", "taxon_id": "3702", 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"qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057483", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mechanosensitive-channel-protein-2-3-transmembrane-domain-ipr057483.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mechanosensitive-ion-channel-protein-2-3-c-terminal-ipr056876.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056876", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mechanosensitive-ion-channel-protein-2-3-c-terminal-ipr056876.yaml" }, { "cited_uniprot_accession": "", "commit": 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"link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/mechanosensitive-ion-channel-mscs-transmembrane-2-ipr011014.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011014", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/mechanosensitive-ion-channel-mscs-transmembrane-2-ipr011014.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-10-287-1260-1-10-287-1260.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.287.1260", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-10-287-1260-1-10-287-1260.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-30-30-60-2-30-30-60.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.30.30.60", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-30-30-60-2-30-30-60.yaml" } ], "pfam_ids": [ "PF00924" ], "protein_name": "Mechanosensitive ion channel protein 1, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGVRLSLLKSIQRSIKPHATAKSCSGLLNSHARAFTCGNLLDGPKASPSMISFSSNIRLHNDAKPFNYLGHSSYARAFSSKSDDFGSIVASGVTGSGDGNGNGNDWVEKAKDVLQTSVDAVTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTGTLFAWVVMPRILRRFHTYAMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFAQIAAMVAPTTIAAQYFSPTVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTLDKVSSVGLFAIGLMASAEACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRPFSMGDTIKAGSVEGQVIEMGLTTTSLLNAEKFPVLVPNSLFSSQVIVNKSRAQWRAIASKIPLQIDDLDMIPQISNEIKEMLRSNTKVFLGKEAPHCYLSRVEKSFAELTIGCNLIRMGKEELYNTQQEVLLEAVKIIKKHGVSLGTTWDNSTL", "sequence_length": 497, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70fbee4514a01faa4c1acbff3b2b008e4de2fa18953f8b1af52b198347d3c9e7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VZL4.json", "taxon_id": "3702", "uniprot_accession": "Q8VZL4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mechanosensitive-ion-channel-mscs-ipr006685.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006685", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mechanosensitive-ion-channel-mscs-ipr006685.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ms-channel-2nd-pf00924.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF00924", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ms-channel-2nd-pf00924.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/mechanosensitive-ion-channel-mscs-beta-domain-superfamily-ipr023408.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023408", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/mechanosensitive-ion-channel-mscs-beta-domain-superfamily-ipr023408.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-30-30-60-2-30-30-60.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.30.30.60", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-30-30-60-2-30-30-60.yaml" } ], "pfam_ids": [ "PF00924" ], "protein_name": "Mechanosensitive ion channel protein 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAVDSTDRRDFIVNINGQESGAVGATGSSSNAEGGNIWKESSYDFWDGEKGKNDKKGDDEDEDGGSFHFRQRGERRHSSAELSDPPSKLIGQFLHKQRASGDEISLDVELNMAELQSNTPPRPATASNTPRRGLTTISESSSPVKTKVKADAVRRRQNRTSLGGSSDEEGRNRDEAEVLKCGSKKPMLSRNKTKSRLQDPPTPTHPAIDKTEMKSGRRSGIFKSGFLGKSPKAGTPGRNGFEEEEEEDPFLDEDLPEEFKRDKLSFWVFLEWISLVLIVTSLVCSLTIHNLQRKTWWKLDLWKWEVTVLVLICGRLVSSWIVRIIVFLVEKNFTWRKRVLYFVYGVRKSVQNCLWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASSFHMSTYFDRIQESLFTQYVIETLSGPPLMEIQRMEEEEQQVAEDVKSLEKLAGAKLPPALKATVKSFMKVGKSPGLNRIGSKRGEDGEGIRIDQLKRMNTKNVSAWNMKRLMNIILKGAISTLDQNMQDTTQEDEDATHIRSEYEAKCAARKIFHNVTEPGSRYIYLEDFLRFLCEEEAERAMALFEGASESDKISKSCLKNWVVKAFRERRALALTLNDTKTAVDRLHRIINVVIGIIIIIIWLLILGIATTRFLLVLSSQLLLVAFVFGNSCKTIFEAIIFLFVMHPFDVGDRCEIDGVQLVVEEMNILTTVFLRYDNQKIIYPNSVLGTKPIANYYRSPDMGDAVEFCVHIATPPEKITAIKQRILSYVDNKKDYWYPAPMIVFLSMDDLNSVKIAVWLTHRMNHQDMGERYIRRGLLLEEVGKTCRELDIEYRLYPLNINVRSLPPTANPTSSDRIPPSWMQQRGP", "sequence_length": 881, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5560af4313ad6a7dd71a6298d0cfed7e48a007b0fa21e922b2595456c45167ff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LH74.json", "taxon_id": "3702", "uniprot_accession": "Q9LH74", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mechanosensitive-ion-channel-mscs-ipr006685.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006685", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mechanosensitive-ion-channel-mscs-ipr006685.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ms-channel-2nd-pf00924.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF00924", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ms-channel-2nd-pf00924.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/mechanosensitive-ion-channel-mscs-beta-domain-superfamily-ipr023408.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023408", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/mechanosensitive-ion-channel-mscs-beta-domain-superfamily-ipr023408.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-30-30-60-2-30-30-60.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.30.30.60", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-30-30-60-2-30-30-60.yaml" } ], "pfam_ids": [ "PF00924" ], "protein_name": "Mechanosensitive ion channel protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mechanosensitive-ion-channel-protein-msy1-2-like-transmembrane-domain-ipr058650.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ms-channel-2nd-pf00924.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF00924", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ms-channel-2nd-pf00924.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-30-30-60-2-30-30-60.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.30.30.60", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-30-30-60-2-30-30-60.yaml" } ], "pfam_ids": [ "PF00924", "PF25886" ], "protein_name": "Mechanosensitive ion channel protein 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEQKSSNGGGGGGDVVINVPVEEASRRSKEMASPESEKGVPFSKSPSPEISKLVGSPNKPPRAPNQNNVGLTQRKSFARSVYSKPKSRFVDPSCPVDTSILEEEVREQLGAGFSFSRASPNNKSNRSVGSPAPVTPSKVVVEKDEDEEIYKKVKLNREMRSKISTLALIESAFFVVILSALVASLTINVLKHHTFWGLEVWKWCVLVMVIFSGMLVTNWFMRLIVFLIETNFLLRRKVLYFVHGLKKSVQVFIWLCLILVAWILLFNHDVKRSPAATKVLKCITRTLISILTGAFFWLVKTLLLKILAANFNVNNFFDRIQDSVFHQYVLQTLSGLPLMEEAERVGREPSTGHLSFATVVKKGTVKEKKVIDMGKVHKMKREKVSAWTMRVLMEAVRTSGLSTISDTLDETAYGEGKEQADREITSEMEALAAAYHVFRNVAQPFFNYIEEEDLLRFMIKEEVDLVFPLFDGAAETGRITRKAFTEWVVKVYTSRRALAHSLNDTKTAVKQLNKLVTAILMVVTVVIWLLLLEVATTKVLLFFSTQLVALAFIIGSTCKNLFESIVFVFVMHPYDVGDRCVVDGVAMLVEEMNLLTTVFLKLNNEKVYYPNAVLATKPISNYFRSPNMGETVEFSISFSTPVSKIAHLKERIAEYLEQNPQHWAPVHSVVVKEIENMNKLKMALYSDHTITFQENRERNLRRTELSLAIKRMLEDLHIDYTLLPQDINLTKKN", "sequence_length": 734, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6fa5c5a52fb53cf38ba97d46436cf9d44f230ef52959bb4771dc5c0ab5f1b822", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LYG9.json", "taxon_id": "3702", "uniprot_accession": "Q9LYG9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mechanosensitive-ion-channel-mscs-ipr006685.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006685", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mechanosensitive-ion-channel-mscs-ipr006685.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ms-channel-2nd-pf00924.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF00924", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ms-channel-2nd-pf00924.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/mechanosensitive-ion-channel-mscs-beta-domain-superfamily-ipr023408.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023408", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/mechanosensitive-ion-channel-mscs-beta-domain-superfamily-ipr023408.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-30-30-60-2-30-30-60.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.30.30.60", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-30-30-60-2-30-30-60.yaml" } ], "pfam_ids": [ "PF00924" ], "protein_name": "Mechanosensitive ion channel protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVDAADRREVIVKIDGENGNNNGVSGETVGKIWRDGSYDFWTDGEGNLNKGHNAAAVDSDRSAATTGEQQKDEGFEFRRGEDPPTKLIGQFLHKQQASGEICLDMDLGMDELQSRGLTPVSESPRVSTKRDPVGRRDSRSNTNNNDDGEVVKCSGNNAPIQRSSSTLLKMRTRSRLSDPPTPQLPPQTADMKSGRIPKSGQMKSGFFGKSPKTQGEEEEDDPFAAEDLPEEYRKDKLSLWIVLEWLSLILIIAGFVCTLAIPSLRKKKLWELQLWKWESMVLVLICGRLVSSWIVKIVVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLLAWHFLFDEKVAKAANTKALRVVTKIFVCLLVGFLLWLVKTLLVKVLASSFHMSTYFDRIQESLFTQYVIETLSGPPLIEIQKNEEEEERISVEVKKFQNPGGVEIQSGAQKSPMKTGKSPFLSHVLSNGGGGGGENKGITIDSLHKLNPKNVSAWKMKRLMNIIRNGSLTTLDEQLQDPSLDDDKGNQIRSEFEAKLAARKIFHNVAKPGSKFIYANDIMRFLPDDEALKTLSLFEGASETNRISKSSLKNWVVNAFRERRALALTLNDTKTAVNRLHKMVNIVVGIIILVIWLIILGITSTKFLVVMSSQVVVVAFIFGNMCKIVFESIIYLFVIHPFDVGDRCEIDGVQMVVEEMNILTTVFLRFDNQKVVYPNSLLWTKSIGNYYRSPDMGDGIEFSIHITTPAEKIILIKQRITSYIEGKKDHWYPAPMIVFKDMESLNSVRIAVWPTHRMNHQDMGEKWARRSQLVEEIAKICRELDIEYRLYPLDINVRNLPTSTALPVSDRLPPNWSAPASGSN", "sequence_length": 856, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ee9f2781cce6f60c0a27380622139adaf6b93360f1188962ba4a59cbe1d8cec8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SYM1.json", "taxon_id": "3702", "uniprot_accession": "Q9SYM1", "uniprot_release": "2026_03" } ], "pfam_id": "PF00924", "short_name": "MS_channel_2nd", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 30, "discovery_scanned": true, "example_count": 30, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain UCBPP-PA14)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chase8-pf17152.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17152", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chase8-pf17152.yaml" } ], "pfam_ids": [ "PF00672", "PF00990", "PF17152" ], "protein_name": "Diguanylate cyclase TpbB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNRRRRYTGSNPSLRRVLYRAHLGVALVAVFTAGLAVTLVGLLTLRAYADPNQQLIARSISYTVEAAVVFGDAQAAEESLALIASSEEVSSAIVYDRQGQPLASWHRESTGPLHLLEQQLAHWLLSAPTEQPILHDGQKIGSVEVKGSGGSLLRFLLTGFAGMVLCLLLTALGAFYLSRRLVRGIVGPLDQLAKVAHTVRRERDFEKRVPEAGIAELSQLGEDFNALLDELESWQARLQDENASLAHQAHHDSLTSLPNRAFFEGRLSRALRDASEHREQLAVLFIDSDRFKEINDRLGHAAGDTVLVNIAMRIRGQLRESDLVARLGGDEFAVLLAPLASGADALRIADNIIASMQAPIRLSDGSTVSTSLTIGIALYPEHADTPAALLHDADMAMYIAKRQARGSRRLAELNDPRILQEEKEIDSATPEAPPK", "sequence_length": 435, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "08902cd9f730c3263b564cc68f24672328d18a6c04bad84621f6c772e5d5ecd8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0H2Z7X0.json", "taxon_id": "208963", "uniprot_accession": "A0A0H2Z7X0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain UCBPP-PA14)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dgccoil-pf20975.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20975", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dgccoil-pf20975.yaml" } ], "pfam_ids": [ "PF00990", "PF20975" ], "protein_name": "Diguanylate cyclase DgcP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRDDVQRWKDKYLENIEQQERLQRRWDARIDLLRRGLVRSSLAAEGSDKAVDQCMKELREILRRDDMDAGLSGLIPRLEKAVLDSEQRRQQRTQQNIDALGELAQQLLALDLPRELRKPLKQFARDIEERARQSREIPILLSELSRLQRQALAERKGGDAEDGRPSLLQRLFGGKESETAAEPSASVPSVVAASNTPIQPAAAAPSLPVAEHDEAPGGPPQPLPASRVAAIESAPAGWVGVAERGEPNQILLDEPREIWLDSLPLPAGLSFSETLEDAGAESPPAVPADVESAPEAPATPVDNLDGQAVDEAYELPPPIPEPGYSAVAPHIEASLLRLLDGLSLPSSHQPQAEALRERIDGSLNWYELVPVLDDLAVLVLSLADSGQRDFEEYLRQLNERLESFLGHLGDAHAGYTDVLDNARGFDQSLREQVSGLQASVQQATDLNSLKLAVDSRLNGLLASMDEHQREQAEHEQEVSGRLQALMERVNSMEQDAKAFHSHLEDQRQKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKVLKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEPLSITCSAGITAFEGNEAGEVVFERADQALYRAKRAGRDRLEVA", "sequence_length": 671, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a445047f61015b102fb15ab6d5d877b3bd19d554218081643a51207c9611fc48", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0H2ZJS2.json", "taxon_id": "208963", "uniprot_accession": "A0A0H2ZJS2", "uniprot_release": "2026_03" 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00563", "PF00990", "PF03707" ], "protein_name": "Diguanylate cyclase DgcW", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ff65bc18c99eefa2297f055aa3ba9e347a740444caafd14c20961b971b2cb579", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"https://rest.uniprot.org/uniprotkb/O34311.json", "taxon_id": "224308", "uniprot_accession": "O34311", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/diguanylate-cyclase-activity-go0052621.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0052621", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/diguanylate-cyclase-activity-go0052621.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", 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"FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/diguanylate-cyclase-dgcj-nf040885.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF040885", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/diguanylate-cyclase-dgcj-nf040885.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gammaproteobacterial-periplasmic-sensor-domain-gapes1-ipr033420.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033420", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gammaproteobacterial-periplasmic-sensor-domain-gapes1-ipr033420.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gapes1-pf17155.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17155", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gapes1-pf17155.yaml" } ], "pfam_ids": [ "PF00990", "PF17155" ], "protein_name": "Probable diguanylate cyclase DgcJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLHHRMLRHFIAASVIVLTSSFLIFELVASDRAMSAYLRYIVQKADSSFLYDKYQNQSIAAHVMRALAAEQSEVSPEQRRAICEAFESANNTHGLNLTAHKYPGLRGTLQTASTDCDTIVEAAALLPAFDQAVEGNRHQDDYGSGLGMAEEKFHYYLDLNDRYVYFYEPVNVEYFAMNNWSFLQSGSIGIDRKDIEKVFTGRTVLSSIYQDQRTKQNVMSLLTPVYVAGQLKGIVLLDINKNNLRNIFYTHDRPLLWRFLNVTLTDTDSGRDIIINQSEDNLFQYVSYVHDLPGGIRVSLSIDILYFITSSWKSVLFWILTALILLNMVRMHFRLYQNVSRENISDAMTGLYNRKILTPELEQRLQKLVQSGSSVMFIAIDMDKLKQINDTLGHQEGDLAITLLAQAIKQSIRKSDYAIRLGGDEFCIILVDSTPQIAAQLPERIEKRLQHIAPQKEIGFSSGIYAMKENDTLHDAYKASDERLYVNKQNKNSRS", "sequence_length": 496, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a3edb5814911cd7af9ecdf0eef606f37ebb477438f88af27908a400ebb0b74e2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76237.json", "taxon_id": "83333", "uniprot_accession": "P76237", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/cellulose-biosynthesis-regulator-diguanylate-cyclase-dgcq-nf011955.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF011955", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/cellulose-biosynthesis-regulator-diguanylate-cyclase-dgcq-nf011955.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/diguanylate-cyclase-dgc-or-ggdef-domain-diguanylate-cyclase-dgc-or-ggd-cd01949.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd01949", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/diguanylate-cyclase-dgc-or-ggdef-domain-diguanylate-cyclase-dgc-or-ggd-cd01949.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/periplasmic-sensor-domain-chase7-ipr033416.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033416", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/periplasmic-sensor-domain-chase7-ipr033416.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/diguanylate-cyclase-tigr00254.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/diguanylate-cyclase-tigr00254.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chase7-pf17151.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chase7-pf17151.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/ggdef.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50887", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/ggdef.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P76330", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00990", "PF17151", "PF30448" ], "protein_name": "Probable diguanylate cyclase DgcQ", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "9bef528f078716becf5a91abb37b5742128f27dd3d601d2a67dd5549bafdc7e0", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDKHLQYNVDKLIFLRNGMREALVAPLDFTSLRDAVTEFEQHRDEHAWKIELNRRRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYLLRLAHNSSSMVEQAMYVSRAGFYVSTQPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTVSVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRGGIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVFASDNA", "sequence_length": 564, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "9bef528f078716becf5a91abb37b5742128f27dd3d601d2a67dd5549bafdc7e0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76330.json", "taxon_id": "83333", "uniprot_accession": "P76330", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain UTI89 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chase7-pf17151.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chase7-pf17151.yaml" } ], "pfam_ids": [ "PF00990", "PF17151", "PF30448" ], "protein_name": "Probable diguanylate cyclase DgcQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGVVRVQHETKMENQSWLKKLARRLGPGHIVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDKHLQYNVDKLIFLRNGMREALVAPLDFTSLRNAVTEFEQHRDEHAWQIELNRRRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYLLRLAHNSSSMVEQAMYVSRAGFYVSTQPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTVSVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRGGIRMNSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVCASDNA", "sequence_length": 569, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ef57a844c30e84ae43b2597ad468e6f727d2663aeaf058935883a18340dbf915", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1RAI4.json", "taxon_id": "364106", "uniprot_accession": "Q1RAI4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella boydii serotype 4 (strain Sb227)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dosc-2nd-pf21118.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dosc-2nd-pf21118.yaml" } ], "pfam_ids": [ "PF00990", "PF11563", "PF21118" ], "protein_name": "Diguanylate cyclase DosC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEMYFKRMKDEWTGLVEQADPLIRAKAAEIAVAHAHYLSIEFYRIVRIDPHAEEFLSNEQVERQLKSAMERWIINVLSAQVDDVERLIQIQHTVAEVHARIGIPVEIVEMGFRVLKKILYPVIFSSDYSAAEKLQVYHFSINSIDIAMEVMTRAFTFSDSSASKEDENYRIFSLLENAEEEKERQIASILSWEIDIIYKILLDSDLGSSLPLSQADFGLWFNHKGRHYFSGIAEVGHISRLIQDFDGIFNQTMRNTRNLNNRSLRVKFLLQIRNTVSQIITLLRELFEEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELWKASL", "sequence_length": 460, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9ae3c1e0fc9493f4d97436c71bc0d45670b6d2b8b7a63902eaf371e30bd9a7e8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q320T0.json", "taxon_id": "300268", "uniprot_accession": "Q320T0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gapes2-pf17156.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17156", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gapes2-pf17156.yaml" } ], "pfam_ids": [ "PF00990", "PF17156" ], "protein_name": "Probable diguanylate cyclase DgcI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVIDTAFAVANIAEYRRSVAIDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSDECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLGLERFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVFAYKKDVYLRVCTLIIFFAALVAVISGASCLYLVRRVINRGIVEKEAIINNHFERVLDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINDTFGHLLGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINLSTSIGVAHSNECTTVERLKMLADERLYKSKKNGRAQISWQ", "sequence_length": 442, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "33ea6e0dcbbfb5c693251c2543c519a324f85f514f7b738ea90a14f1cb2f55f9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8X6V3.json", "taxon_id": "83334", "uniprot_accession": "Q8X6V3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chase7-pf17151.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chase7-pf17151.yaml" } ], "pfam_ids": [ "PF00990", "PF17151", "PF30448" ], "protein_name": "Probable diguanylate cyclase DgcQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQHETKMENQSWLKKLARRLGPGHIVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDKHLQYNVDKLIFLRNGMREALVAPLDFTSLRDAVTEFEQHRDEHAWQIELNRRRTLSVNGVSDALVSEGNLLSRENESLDNEITAALEVGYLLRLAHNSSSMVEQAMYVSRAGFYVSTQPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTVSVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRGGIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVFASDNA", "sequence_length": 564, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1cf5e48a630de8a098fc4bff71a8341d46997640ef3b55ed828fe8f5a7863a37", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8XB92.json", "taxon_id": "83334", "uniprot_accession": "Q8XB92", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dgccoil-pf20975.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20975", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dgccoil-pf20975.yaml" } ], "pfam_ids": [ "PF00990", "PF20975" ], "protein_name": "Diguanylate cyclase DgcP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRDDVQRWKDKYLENIEQQERLQRRWDARIDLLRRGLVRSSLAAEGSDKAVDQCMKELREILRRDDMDAGLSGLIPRLEKAVLDSEQRRQQRTQQNIDALGELAQQLLALDLPRELRKPLKQFARDIEERARQSREIPILLSELSRLQRQALAERKGGDAEDGRPSLLQRLFGGKESETTAEPSASVPSVVAASNTPIQPAAAAPSLPVAEHDEAPGGPPQPLPARTVAAIESAPAGWVGVAERGEPNQILLDEPREIWLDSLPLPAGLSFSETLEEAGAEPSPAMPADVESAPEAPATPVDNLDGQAVDEAYELPPPIPEPGYSAVAPHIEASLLRLLDGLSLPSSHQPQAEALRERIDGSLNWYELVPVLDDLAVLVLSLADSGQRDFEEYLRQLNERLESFLGHLGDAHAGYTDVLDNARGFDQSLREQVSGLQASVQQATDLNSLKLAVDSRLNGLLASMDEHQREQAEHEQEVSGRLQALMERVNSMEQDAKAFHSHLEDQRQKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKVLKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEPLSITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRLEVA", "sequence_length": 671, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6e7a0706f6644dba6aebd1130814bd4de1e4c59f67b8a8e0807c6406650bca8f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HT84.json", "taxon_id": "208964", "uniprot_accession": "Q9HT84", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "Q9HXT9", "commit": "62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "TraitMech", "path": "data/traits/ecology/biofilm_formation.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "traitmech:000053", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/TraitMech/blob/62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b/data/traits/ecology/biofilm_formation.yaml" } ], "pfam_ids": [ "PF00072", "PF00990" ], "protein_name": "diguanylate cyclase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MHNPHESKTDLGAPLDGAVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSRSYIALQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQVGLMEQPVPPAPAG", "sequence_length": 347, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8c32113cdabc3213ba2e5c5c5615e8fd9966bf81e223957a827e682e3aa814fb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HXT9.json", "taxon_id": "208964", "uniprot_accession": "Q9HXT9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/mhyt-pf03707.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03707", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/mhyt-pf03707.yaml" } ], "pfam_ids": [ "PF00563", "PF00990", "PF03707" ], "protein_name": "Cyclic di-GMP phosphodiesterase NbdA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPFLPGKMPKPAVCRRPATSFHADLAGGSRYLYWKHNATPSPHPRRPRVFRVQGDTAMDWQGLRFLGESPVDGYVLQNCTYSPSLVALAFLVACLAGYTALDMVERVGNSLSHPRLWQWIGAFCLGSGIWATHFVAMLAFHAPIALRYDLPITGLSLLIAVAASYLTMYMTARPRFGLLPCLLAACCIGLGIAAMHYTGMAAMRSVATQYYQPSLFALSVLIAIGAAFTALAAVPYLRGRRSARYRYMKLIASLLLAGAIAAMHFTGMAALVLSVPAGTPLELQASADSLRLGWLTGVLASAIAACGIWAAWSEKQRERRLSENSRVNALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVMFLDLDHFKRINDSLGHDSGDQLLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQDHEAHILSQRLMQKMKEPIALDGRTLVMTASVGVSLYPNDGEQCEELLKNAGLALHQSKACGRNNAQFFSRQLLVRATQELQMEEELRQALRDDQLELHYQPILALADGEVHQLEALVRWRHPTQGLLGPDRFIGLAEANGMIDQLDDWVLRRACRDLRSLHLAGHERLRVAVNCCASNLGRASLVDEVRHALEQAGLAACFLELEVTEDALMYNIDQTIPLLERLRELGVSLSIDDFGTGYSSLAYLRRLPLDALKVDRSFIMDIPASQRDMEIAQAIIAMAQKLHLKVVAEGVETPQQLAFLRENHCELVQGYLFSRPLPLAALEEFLRAYRFDAAPPLRSLNQA", "sequence_length": 783, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7632aa504904b61c054c4de7e5852e90e6ebddf61b17cccbc161d98a71466529", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HYT3.json", "taxon_id": "208964", "uniprot_accession": "Q9HYT3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/mhyt-pf03707.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03707", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/mhyt-pf03707.yaml" } ], "pfam_ids": [ "PF00563", "PF00990", "PF03707" ], "protein_name": "Bifunctional diguanylate cyclase/cyclic di-GMP phosphodiesterase MucR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLISSYNQVLVAFSLIVAILASYTALDMAGRVTLAKGREALSWLIGGAFAMGFGIWSMHFVGMLAFSLPIPLGYDLGLTLLSLLLAVGSSAFALWLVCQAELPWQRLALGALLMGSGIAAMHYTGMAALLMMPGIVYDPLWLGLSILIAVIASGAALWIAFRLRHGSRRIVLVRAGAALVMGCAIVGMHYTGMAAAQFPLGSFCGAAGRGIDNGWLAVLVIVITLAVIAIALIVSVLDSRLEARTSVLATSLARANRELIQLALHDNLTKLPNRMLLDDRLEQAIQQAIRDDRRFAVLFMDLDGFKAVNDAYGHHLGDLLLIEVAERIRANVRAQDTIARLGGDEFVLLIEAREPADAATLAEKLVKRISQPYQISRHEVRISASIGIALYPGDGQTRHELMINADAAMYHAKDQGRNGYCFFESSMNANAQEQLQLLHDLRQALERRQLVLHYQPKVLAPNGPMIGVEALLRWEHPQHGLITPGQFLPLAEKTGLIVQIGEWVLDEACRQMRLWLDGGHADWNIAVNLSALQFAHAGLVDSVRNALLRHSLEPSHLILEVTESTAMRDADASLVILEQLSAMGVGISIDDFGTGYSSLLYLKRLPASELKIDRGFINELAHDSDDAAIVSAIVALGRTLNLKIVAEGVETEAQQEFLTRLGCNSLQGFLLGRPMPAEQLLASVA", "sequence_length": 685, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d62ab00e79efaf87aec0eae94bda9aff5ea63cf6f60d84a6ed66d003739d64f2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9I310.json", "taxon_id": "208964", "uniprot_accession": "Q9I310", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chase8-pf17152.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17152", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chase8-pf17152.yaml" } ], "pfam_ids": [ "PF00672", "PF00990", "PF17152" ], "protein_name": "Diguanylate cyclase TpbB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNRRRRYTGSNPSLRRVLYRAHLGVALVAVFTAGLAVTLVGLLTLRAYADPNQQLIARSISYTVEAAVVFGDAQAAEESLALIASSEEVSSAIVYDRQGQTLASWHRESTGPLHLLEQQLAHWLLSAPTEQPILHDGQKIGSVEVKGSGGSLLRFLLTGFAGMVLCLLLTALGAFYLSRRLVRGIVGPLDQLAKVAHTVRRERDFEKRVPEAGIAELSQLGEDFNALLDELESWQARLQDENASLAHQAHHDSLTSLPNRAFFEGRLSRALRDANEHREQLAVLFIDSDRFKEINDRLGHAAGDTVLVNIAMRIRGQLRESDLVARLGGDEFAVLLAPLASGADALRIADNIIASMQAPIRLSDGSTVSTSLTIGIALYPEHADTPAALLHDADMAMYIAKRQARGSRRLAELNDPRILQEEKEIDSATPEAPPK", "sequence_length": 435, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2d9f9e30121404edaafb806c13ee9d4ef2f72665e5b18bed389e16263b0a6efd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9I4L5.json", "taxon_id": "208964", "uniprot_accession": "Q9I4L5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fist-c-pf10442.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10442", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fist-c-pf10442.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fist-pf08495.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08495", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fist-pf08495.yaml" } ], "pfam_ids": [ "PF00563", "PF00990", "PF08495", "PF10442" ], "protein_name": "Cyclic di-GMP phosphodiesterase CdpA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFTVSRLIPDLASANQVLETMDLPHGQSILVQIFSPLSREHVVQLARLIRSRHPQACLLGCSTEEVIFQGEVHHQVTLLQITVFEQTYLSRAVVDYSDDEAADAERLARQLELTSMSRAVVCFSWQMDTLQVARFALRDTQGAPVPVAGGAAKQTPSGRWVLLDEACYQNASVAIALHGEALYVETGGYTEWQPVGRTYRVTAVEGDRVLRLDDEPIEAIYQRNLGAQADLPHDWLISFPLMKGECRHQDLYLPLGLAEEGGLRFNRPLALQDEVRFCFDHPSLTLERVYLTAQQLQAKQCQQVWVFNCALRLNFMHENHELQPLQAVAPTDGCYCWGELLYEHGQQQVMHHSMTFLALREGAVRDDLVPIPLPSYPEGMTSPLFNLIRHAFHDLDAMTDNLAQQIRAQTSLLTASYRRDRRTGLPNRVVLRERLANFAANEHLIALKVTNFNQINEKYGYPVGDKLLRDLSEQFQVFLDQKLAGQSGLYAIGVGEWATVFRAKLDGKSIHSHFYQFVEQLEHVNFEPYGLPNVDYLSISLCAGLVSQGDFAEHSPDELLLRAIEARRYAFNNNHHFCNAARLKVQESVRQERLNWLSRVSRAVVRDDVVVYAQPICQARSHIVASYECLVRIEDEGEIILPGNFLPIITDTHLYTRLSRQMITHTFNMMRHRPEAFSINLSPQDLMSERTLQHLEAAIKSVADPARVGLEVLESEQIKDYGRMIEVCNHFRTLGATIIVDDFGSGYSNIDEIVKLEPQVIKLDGSLIRNIDQDVKQRRIAEQLVKLCQVLNAKTVAEFVHNQTVCRISEDMGVDYLQGYFLGRPSRLG", "sequence_length": 829, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1310492702e8c3da8992ceffcdffe062cd33827fad727a52e25cf681962f37ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9KVL2.json", "taxon_id": "243277", "uniprot_accession": "Q9KVL2", "uniprot_release": "2026_03" } ], "pfam_id": "PF00990", "short_name": "GGDEF", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 18, "discovery_scanned": true, "example_count": 18, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Erwinia billingiae (strain Eb661)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/tatd-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/tatd-2.yaml" } ], "pfam_ids": [ "PF01026" ], "protein_name": "3'-5' ssDNA/RNA exonuclease TatD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFDIGVNLTSTQFAKDRDQVVKRAKDAGITGLLITGTNALESQQAQSLATRRPGYCWSTAGVHPHHASEWSGETAATLKRLAESPEVVAIGECGLDFNRNISEPEQQVYAFNAQLELAAELAMPVFLHCRDAHDRFLAVLTPWLPTLPGAVVHCFTGTREELEACLAAGLSIGITGWVCDERRGVELRELMPLIPADRLLLETDAPYLLPRDMRPRPPSRRNEPCFLPHIVQVVAGLRGEEPEALGRQCDANARKLFRLPA", "sequence_length": 261, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0635bd784bf56419506a95d809b8b584925c478c71711a6ac025e03826446837", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D8MKW4.json", "taxon_id": "634500", "uniprot_accession": "D8MKW4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/tatd-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01137", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/tatd-1.yaml" } ], "pfam_ids": [ "PF01026" ], "protein_name": "Uncharacterized metal-dependent hydrolase TatD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVDAHTHLDACGARDADTVRSLVERAAAAGVTAVVTVADDLESARWVTRAAEWDRRVYAAVALHPTRADALTDAARAELERLVAHPRVVAVGETGIDMYWPGRLDGCAEPHVQREAFAWHIDLAKRTGKPLMIHNRQADRDVLDVLRAEGAPDTVILHCFSSDAAMARTCVDAGWLLSLSGTVSFRTARELREAVPLMPVEQLLVETDAPYLTPHPHRGLANEPYCLPYTVRALAELVNRRPEEVALITTSNARRAYGLGWMRQ", "sequence_length": 264, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c32a215b21710b452d4ccf1d0f48601f30a5a892aa486bb4ac959d4c0ad23fb6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O08343.json", "taxon_id": "83332", "uniprot_accession": "O08343", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/metal-dependent-hydrolase-nf008075.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008075", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/metal-dependent-hydrolase-nf008075.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/ychf-tatd-family-dna-exonuclease-tigr00010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/ychf-tatd-family-dna-exonuclease-tigr00010.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/tatd-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01137", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/tatd-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/tatd-3.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01091", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/tatd-3.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AFQ7", "section": "protein_registry", "url": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/tatd-like-proteins-e-coli-tatd-is-a-cytoplasmic-protein-shown-to-have--cd01310.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tatd-dnase-pf01026.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01026", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tatd-dnase-pf01026.yaml" } ], "pfam_ids": [ "PF01026" ], "protein_name": "Putative deoxyribonuclease TATDN3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"data/traits/sequence/conservation/interpro/deoxyribonuclease-tatd-related-conserved-site-ipr018228.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/deoxyribonuclease-tatd-related-conserved-site-ipr018228.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tatd-dnase-pf01026.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01026", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tatd-dnase-pf01026.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MIDAHTHLDVRSFEDLEKMALSGIETIITCAHDPYKMSTPEVYLDHWDRLINLEVKRGEMAGVEVKVAVGVHPMGYPKNWEVLIKKLPEFLDNENVVAIGETGLHYLTEDEKNLLREQLYLAKDYNMPIIIHTPEKNKKEALIEILKILDEVKIKDSLVMIDHINKETVDLIDRDVYVGLTVQPSMKLTHEEAAEIIKNYNKKFILSSDLGSLKADIYALPRTKLYMKNIGVDEEKIIASVYKNAKGFYRL", "sequence_length": 251, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "56d45ed11b921048667207a2ac61052821c68b675f73611c127a197054b5dc98", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58171.json", "taxon_id": "243232", "uniprot_accession": "Q58171", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { 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280, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "481c0696b05cd4579839c66b70ecccf21c46d95c7265fb515abc7d76cb32016c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58527.json", "taxon_id": "243232", "uniprot_accession": "Q58527", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/tatd-like-proteins-e-coli-tatd-is-a-cytoplasmic-protein-shown-to-have--cd01310.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd01310", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/tatd-like-proteins-e-coli-tatd-is-a-cytoplasmic-protein-shown-to-have--cd01310.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tatd-dnase-pf01026.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01026", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tatd-dnase-pf01026.yaml" } ], "pfam_ids": [ "PF01026" ], "protein_name": "Uncharacterized protein MJ1383", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"data/traits/sequence/conservation/interpro/deoxyribonuclease-tatd-related-conserved-site-ipr018228.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/deoxyribonuclease-tatd-related-conserved-site-ipr018228.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/tatd-like-proteins-e-coli-tatd-is-a-cytoplasmic-protein-shown-to-have--cd01310.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd01310", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/tatd-like-proteins-e-coli-tatd-is-a-cytoplasmic-protein-shown-to-have--cd01310.yaml" } ], "pfam_ids": [ "PF01026" ], "protein_name": "Deoxyribonuclease TATDN1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLFKFVDIGINLTDPMFRGIYRGVQKHQDDLQDVIERAIQIGVKKFMITGGSLQDSKDALQLAQTNDMFFSTVGCHPTRCDEFEKGSPDQYLAGLLSLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTQLPMFLHCRNSHTEFLDIMRRNRDRYVGGVVHSFDGTKEAAAALVDLGLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYINTSFPTKKKWENGHCLKDRNEPCHIIQILEIMSAVREEDPLELANTLYNNTIKVFFS", "sequence_length": 295, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cc9e8ec8083f58fa3cdc15b68a4e1fd2655420a3abbefc01d474be07d191d83d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P8M1.json", "taxon_id": "10090", "uniprot_accession": "Q6P8M1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/tatd-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01137", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/tatd-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/tatd-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/tatd-2.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/tatd-3.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01091", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/tatd-3.yaml" } ], "pfam_ids": [ "PF01026" ], "protein_name": "3'-5' RNA nuclease TATDN2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASERGKVKHNWSSTSEGCPRKRSCLREPCDVAPSSRPAQRSASRSGGPSSPKRLKAQKEDDVACSRRLSWGSSRRRNNSSSSFSPHFLGPGVGGAASKGCLIRNTRGFLSSGGSPLRPANASLEEMASLEEEACSLKVDSKDSSHNSTNSEFAAEAEGQNDTIEEPNKVQKRKRDRLRDQGSTMIYLKAIQGILGKSMPKRKGEAATRAKPSAAEHPSHGEGPARSEGPAKTAEGAARSVTVTAAQKEKDATPEVSMEEDKTVPERSSFYDRRVVIDPQEKPSEEPLGDRRTVIDKCSPPLEFLDDSDSHLEIQKHKDREVVMEHPSSGSDWSDVEEISTVRFSQEEPVSLKPSAVPEPSSFTTDYVMYPPHLYSSPWCDYASYWTSSPKPSSYPSTGSSSNDAAQVGKSSRSRMSDYSPNSTGSVQNTSRDMEASEEGWSQNSRSFRFSRSSEEREVKEKRTFQEEMPPRPCGGHASSSLPKSHLEPSLEEGFIDTHCHLDMLYSKLSFQGTFTKFRKIYSSSFPKEFQGCISDFCDPRTLTDCLWEELLKEDLVWGAFGCHPHFARYYSESQERNLLQALRHPKAVAFGEMGLDYSYKCTTPVPEQHKVFERQLQLAVSLKKPLVIHCREADEDLLEIMKKFVPPDYKIHRHCFTGSYPVIEPLLKYFPNMSVGFTAVLTYSSAWEAREALRQIPLERIIVETDAPYFLPRQVPKSLCQYAHPGLALHTVREIARVKDQPLSLTLAALRENTSRLYSL", "sequence_length": 761, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dfa4ddde8807fa8b843c698f3d52513677907811d1edc9b03669f5107637e813", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q93075.json", "taxon_id": "9606", "uniprot_accession": "Q93075", "uniprot_release": "2026_03" } ], "pfam_id": "PF01026", "short_name": "TatD_DNase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 22, "discovery_scanned": true, "example_count": 22, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vreelandella aquamarina", "origins": [ { "cited_uniprot_accession": "A0A0D7UY21", "commit": "62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "TraitMech", "path": "data/traits/environment/temperature_optimum_mid4.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "METPO:1000446", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/TraitMech/blob/62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b/data/traits/environment/temperature_optimum_mid4.yaml" } ], "pfam_ids": [ "PF01027" ], "protein_name": "Uncharacterized protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": 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"NOT_ASSESSED", "record_id": "CDD:cd10432", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/bacterial-bax-inhibitor-bi-1-ycca-like-proteins-this-family-is-compris-cd10432.yaml" } ], "pfam_ids": [ "PF01027" ], "protein_name": "pH-sensitive calcium channel", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQATVHESKQSIMQRILTVFVFTLLIATVGLFIGQFVPVALMLPLSILEVAMIILAFWMRRRKAVGYAFVYTFAFVSGITLFPIVSHYASIAGAYVVLEAFGSTFVIFAVLGTIGAKMKKDLSFLWSFLLVAVLALAVVGIFNIFSPLNSAAMMAYSVIGTIVFSLYILYDLNQIKHRHITEDLIPVMALSLYLDFINLFINLLRFFGILSSDD", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "98f6f21d3f8ddf93429b1f1a237aa21a2d963e0f3838367a66d22a064dd8feb2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31539.json", "taxon_id": "224308", "uniprot_accession": "O31539", "uniprot_release": "2026_03" }, { 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"MDRFPRSDSIVQPRAGLQTYMAQVYGWMTVGLLLTAFVAWYAANSAAVMELLFTNRVFLIGLIIAQLALVIVLSAMIQKLSAGVTTMLFMLYSALTGLTLSSIFIVYTAASIASTFVVTAGMFGAMSLYGYTTKRDLSGFGNMLFMALIGIVLASLVNFWLKSEALMWAVTYIGVIVFVGLTAYDTQKLKNMGEQIDTRDTSNLRKYSILGALTLYLDFINLFLMLLRIFGNRR", "sequence_length": 234, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "622cdb6766d378806104ab12c6368d942f26653ee905a928533222962f888d2a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAC4.json", "taxon_id": "83333", "uniprot_accession": "P0AAC4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/ftsh-protease-modulator-ycca-nf007765.yaml", "qualification_status": "NOT_ASSESSED", "record_id": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AAC6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01027" ], "protein_name": "Modulator of FtsH protease YccA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "cdf3430239c64ca91ecacf5f9967c9b650a564f007db517522887536d4612b94", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": 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"data/traits/sequence/pattern/yjef-c-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01049", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/yjef-c-1.yaml" } ], "pfam_ids": [ "PF01256", "PF03853" ], "protein_name": "Bifunctional NAD(P)H-hydrate repair enzyme Nnr", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKEIDELTIKEYGVDSRILMERAGISVVLAMEEELGNLSDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVVEQFEPSILNEFDVVVDAIFGTGLRGEITGEYAEIINLVNKSGKVVVSVDVPSGIDSNTGKVLRTAVKADLTVTFGVPKIGHILFPGRDLTGKLKVANIGHPVHLINSINRYVITREMVRSLLPERPRDSHKGTYGKVLIIAGSRLYSGAPVLSGMGSLKVGTGLVKLAVPFPQNLIATSRFPELISVPIDTEKGFFSLQNLQECLELSKDVDVVAIGPGLGNNEHVREFVNEFLKTLEKPAVIDADAINVLDTSVLKERKSPAVLTPHPGEMARLVKKTVGDVKYNYELAEEFAKENDCVLVLKSATTIVTDGEKTLFNITGNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDERGLTASELLRLIPEAIRRLKE", "sequence_length": 490, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c7c789fb3641bd50039ca89e7d84de7029d6a39903097f64742d15d5e55ab893", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9X024.json", "taxon_id": "243274", "uniprot_accession": "Q9X024", "uniprot_release": "2026_03" } ], "pfam_id": "PF01256", "short_name": "Carb_kinase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis serovar L2 (strain ATCC VR-902B / DSM 19102 / 434/Bu)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/clipper-pf01345.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01345", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/clipper-pf01345.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chlam-omp6-pf03504.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chlam-omp6-pf03504.yaml" } ], "pfam_ids": [ "PF01345", "PF03504" ], "protein_name": "Large cysteine-rich periplasmic protein OmcB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKLIRRAVTIFAVTSVASLFASGVLETSMAEFISTNVISLADTKAKDNTSHKSKKARKNHSKETPVNRKKVAPVHESKATGPKQDSCFGRMYTVKVNDDRNVEITQAVPKYATVGSPYPVEITATGKRDCVDVIITQQLPCEAEFVRSDPATTPTADGKLVWKIDRLGQGEKSKITVWVKPLKEGCCFTAATVCACPEIRSVTKCGQPAICVKQEGPENACLRCPVVYKINVVNQGTATARNVVVENPVPDSYAHSSGQRVLTFTLGDMQPGEHRTITVEFCPLKRGRATNIAMVSYCGGHKNTASVTTVINEPCVQVSIAGADWSYVCKPVEYVISVSNPGDLVLRDVVVKDTLSPGVTVLEAAGAQISCNKVVWTVKELNPGESLQYKVLVRAQTPGQFTNNVVVKSCSDCGTCTSCAEATTYWKGVAATHMCVVDTCDPVCVGENTVYRICVTNRGSAEDTNVSLMLKFSKELQPVSFSGPTKGTITGNTVVFDSLPRLGSKETVEFSVTLKAVSAGDARGEAILSSDTLTVPVSDTENTHIY", "sequence_length": 547, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6cf770e7aa339d1489b41d45b1102de917ae54adfd69b2260319ec6702df2a22", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/B0B815.json", "taxon_id": "471472", "uniprot_accession": "B0B815", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydophila psittaci (strain ATCC VR-125 / 6BC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/clipper-pf01345.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01345", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/clipper-pf01345.yaml" } ], "pfam_ids": [ "PF01345", "PF03504" ], "protein_name": "Large cysteine-rich periplasmic protein omcB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKLIRRVVTVLALTSMASSFASGKIEAAAAESLATRFIASTENSDDNVFQATAKKVRFGRNKNQRQEQKHTGAFCDKEFYPCEGGQCQPVDATQESCYGKMYCVRVNDDCNVEISQSVPEYATVGSPYPIEILAVGKKDCVNVVITQQLPCEVEFVSSDPATTPTSDSKLIWTIDRLGQGEKCKITVWVKPLKEGCCFTAATVCACPELRSYTKCGQPAICIKQEGPECACLRCPVCYKIEVCNTGSAIARNVVVDNPVPDGYTHASGQRVLSFNLGDMRPGDSKCFCVEFCPQKRGKVTNVATVSYCGGHKCSANVTTVVNEPCVQVNISGADWSYVCKPVEYTIVVSNPGDLKLYDVVIEDTAPSGATILEAAGAEICCNKAVWCIKEMCPGETLQFKVVAKAQSPGKFTNQVVVKTNSDCGTCTSCAEVTTHWKGLAATHMCVIDTNDPICVGENTVYRICVTNRGSAEDTNVSLILKFSKELQPVSSSGPTKGTITGNTVVFDALPKLGSKESVEFSVTLKGIAPGDARGEAILSSDTLTVPVADTENTHVY", "sequence_length": 557, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ed744b50d466a329d8a07aef31f841442fe0f32a0fd11a566fe3e1fef56bee47", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F0T377.json", "taxon_id": "331636", "uniprot_accession": "F0T377", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia psittaci", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/clipper-pf01345.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01345", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/clipper-pf01345.yaml" } ], "pfam_ids": [ "PF01345", "PF03504" ], "protein_name": "Large cysteine-rich periplasmic protein omcB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKLIRRVVTVLALTSMASSFASGKIEAAAAESLATRFIASTENADDNVFQATAKKVRFGRNKNQRQEQKHTEAFCDKEFYPCEGGQCQPVDATQESCYGKMYCVRVNDDCNVEISQSVPEYATVGSPYPIEILAVGKKDCVNVVITQQLPCEVEFVSSDPATTPTSDSKLIWTIDRLGQGEKCKITVWVKPLKEGCCFTAATVCACPELRSYTKCGQPAICIKQEGPECACLRCPVCYKIEVCNTGSAIARNVVVDNPVPDGYTHASGQRVLSFNLGDMRPGDSKCFCVEFCPQKRGKVTNVATVSYCGGHKCSANVTTVVNEPCVQVNISGADWSYVCKPVEYTIVVSNPGDLKLYDVVIEDTAPSGATILEAAGAEICCNKAVWCIKEMCPGETLQFKVVAKAQSPGKFTNQVVVKTNSDCGTCTSCAEVTTHWKGLAATHMCVIDTNDPICVGENTVYRICVTNRGSAEDTNVSLILKFSKELQPVSSSGPTKGTITGNTVVFDALPKLGSKESVEFSVTLKGIAPGDARGEAILSSDTLTVPVADTENTHVY", "sequence_length": 557, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2b0e141cff2b5836c8a8ac5cec608e1cedadd404fb2740b7e0da8ed0885c5130", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0CZ18.json", "taxon_id": "83554", "uniprot_accession": "P0CZ18", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chlam-omp6-pf03504.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chlam-omp6-pf03504.yaml" } ], "pfam_ids": [ "PF01345", "PF03504" ], "protein_name": "Large cysteine-rich periplasmic protein OmcB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKLIRRVVTVLALTSMASCFASGGIEAAVAESLITKIVASAETKPAPVPMTAKKVRLVRRNKQPVEQKSRGAFCDKEFYPCEEGRCQPVEAQQESCYGRLYSVKVNDDCNVEICQSVPEYATVGSPYPIEILAIGKKDCVDVVITQQLPCEAEFVSSDPETTPTSDGKLVWKIDRLGAGDKCKITVWVKPLKEGCCFTAATVCACPELRSYTKCGQPAICIKQEGPDCACLRCPVCYKIEVVNTGSAIARNVTVDNPVPDGYSHASGQRVLSFNLGDMRPGDKKVFTVEFCPQRRGQITNVATVTYCGGHKCSANVTTVVNEPCVQVNISGADWSYVCKPVEYSISVSNPGDLVLHDVVIQDTLPSGVTVLEAPGGEICCNKVVWRIKEMCPGETLQFKLVVKAQVPGRFTNQVAVTSESNCGTCTSCAETTTHWKGLAATHMCVLDTNDPICVGENTVYRICVTNRGSAEDTNVSLILKFSKELQPIASSGPTKGTISGNTVVFDALPKLGSKESVEFSVTLKGIAPGDARGEAILSSDTLTSPVSDTENTHVY", "sequence_length": 556, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99ef74adf159f0b1a82471b0dd4294bc97f2c5357e5a63f05ff39517acfda2a9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P23700.json", "taxon_id": "83558", "uniprot_accession": "P23700", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chlam-omp6-pf03504.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chlam-omp6-pf03504.yaml" } ], "pfam_ids": [ "PF01345", "PF03504" ], "protein_name": "Large cysteine-rich periplasmic protein OmcB, serovars I/J", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKLIRRAVTIFAVTSVASLFASGVLETSMAESLSTNVISLADTKAKDNTSHKSKKARKNHSKETPVDRKEVAPVHESKATGPKQDSCFGRMYTVKVNDDRNVEITQAVPEYATVGSPYPIEITATGKRDCVDVIITQQLPCEAEFVRSDPATTPTADGKLVWKIDRLGQGEKSKITVWVKPLKEGCCFTAATVCACPEIRSVTKCGQPAICVKQEGPENACLRCPVVYKINVVNQGTATARNVVVENPVPDGYAHSSGQRVLTFTLGDMQPGEHRTITVEFCPLKRGCATNIATVSYCGGHKNTASVTTVINEPCVQVSIAGADWSYVCKPVEYVISVSNPGDLVLRDVVVEDTLSPGVTVLEAAGAQISCNKVVWTVKELNPGESLQYKVLVRAQTPGQFTNNVVVKSCSDCGTCTSCAEATTYWKGVAATHMCVVDTCDPVCVGENTVYRICVTNRGSAEDTNVSLMLKFSKELQPVSFSGPTKGTITGNTVVFDSLPRLGSKETVEFSVTLKAVSAGDARGEAILSSDTLTVPVSDTENTHIY", "sequence_length": 547, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "23121f29448f50414897c0557a33e3f7367403533ce192f3c173c3a268bb9902", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q933I7.json", "taxon_id": "813", "uniprot_accession": "Q933I7", "uniprot_release": "2026_03" } ], "pfam_id": "PF01345", "short_name": "CLIPPER", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 10, "discovery_scanned": true, "example_count": 10, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/fe-s-cluster-assembly-protein-sufb-tigr01980.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01980", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/fe-s-cluster-assembly-protein-sufb-tigr01980.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/suf-system-fes-cluster-assembly-sufbd-n-terminal-ipr045595.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045595", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/suf-system-fes-cluster-assembly-sufbd-n-terminal-ipr045595.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sufbd-n-pf19295.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19295", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sufbd-n-pf19295.yaml" } ], "pfam_ids": [ "PF01458", "PF19295" ], "protein_name": "Iron-sulfur cluster assembly protein SufB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKKMPDIGEYKYGFHDKDVSIFRSERGLTKEIVEEISRMKEEPQWMLDFRLKSLEHFYNMPMPQWGGDLNSLNFDEITYYVKPSERSERSWDEVPEEIKQTFDKLGIPEAEQKYLAGVSAQYESEVVYHNMKEDLEAQGIVFKDTDSALKENEDIFREHWAKVIPPTDNKFAALNSAVWSGGSFIYVPKGVKVETPLQAYFRINSENMGQFERTLIIVDEEASVHYVEGCTAPVYTTNSLHSAVVEIIVKKGGYCRYTTIQNWANNVYNLVTKRTVCEENATMEWIDGNIGSKLTMKYPACILKGEGARGMTLSIALAGKGQHQDAGAKMIHLAPNTSSTIVSKSISKQGGKVTYRGIVHFGRKAEGARSNIECDTLIMDNKSTSDTIPYNEILNDNISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG", "sequence_length": 465, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9c37d1b4bebf7175a3f6c539734e29df9b2f0ed6ef128ad23f18a71bfe976e9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32162.json", "taxon_id": "224308", "uniprot_accession": "O32162", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/fe-s-cluster-assembly-protein-sufd-tigr01981.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01981", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/fe-s-cluster-assembly-protein-sufd-tigr01981.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/suf-system-fes-cluster-assembly-sufbd-n-terminal-ipr045595.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045595", "section": "canonical_examples", "url": 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"https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/other/glutamate_synthase_complex_nadph.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gatase-2-pf00310.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00310", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gatase-2-pf00310.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glu-syn-central-pf04898.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04898", "section": 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"qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01493", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gxgxg-pf01493.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P09831", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00310", "PF01493", "PF01645", "PF04898" ], "protein_name": "Glutamate synthase [NADPH] large chain", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glu-syn-central-pf04898.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glu-syn-central-pf04898.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glu-synthase-pf01645.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01645", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glu-synthase-pf01645.yaml" }, { 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"cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gxgxg-pf01493.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01493", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gxgxg-pf01493.yaml" } ], "pfam_ids": [ "PF00310", "PF01493", "PF01645", "PF04898", "PF07992", "PF14691" ], "protein_name": "Glutamate synthase 1 [NADH], chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAAQGMAYKLRTDAAPTGAGRRARRSHSSVAAPYRAARLVQGGVSIEGGLVGGCQLTEERVAARPPRAAARDAEPVRPLSTLPESSIGLYDPSRERDSCGVGFVAELSGDYKRATVNDALEMLERMAHRGACGCEKNTGDGAGILVALPHNFFREVTKDAGFELPQPGEYAVGMVFLPIDEKRRERSKAEFQKVAESLGHVILGWRRVPTDNSDLGESALQTEPVIEQVFLTKSSSSEADFEQQLYILRRLSILSIRAALNLRRGGKRDFYMCSLSSRTIVYKGQLKPCQLKGYYYADLGHENFTSYMALVHSRFSTNTFPSWDRAQPMRVLGHNGEINTLKGNKNWMKAREGLLECEKLGLTKDQFSKILPIVDATSSDSGAFDGVLELLIRGGRSLPEAVMMMIPEAWQNDVNMEPEKKALYEFLSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYVTHSGRVVMGSEVGVVDVPSKDVLRKGRLNPGMMLLVDFENHTVVDDEALKAQYSKAHPYGEWLKRQKIYLKDIVESVPETERVAPGISGSLTQKNEKKEHAGVNGIVTPLKAFGYTVEALEMLLLPMAKDGVEALGSMGNDTPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGDLLETTEKQCNRLALEGPLVSIDEMEAIKKMNYRGWRSKVLDITYPKKSGRKGLEETLDRICTEARGAIKKGYTVLVLSDRGFSSDRVAVSSLLAVGAVHQHLVANLERTRVGLLVESAEPREVHHFCTLVGFGADAVCPYLAIEAIWCLQNDGKIPPNGDGKPYSKEELVKKYFYASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIRKCFDGTPSRIEGATFEMLARDALRLHELAFPSRAPPPGSADAKALPNPGDYHWRKNGEVHLNDPLAMAKLQEAARVNSRAAYKEYSRRIQELNKTCNLRGMLKFKDTADMISVDEVEPASEIVKRFVTGAMSYGSISLEAHTALAMAMNKLGGKSNTGEGGEQPSRMEPLANGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRHSTAGVGLISPPPHHDIYSIEDLAQLIHDLKNSNPRARISVKLVSEAGVGVVASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANGLRGRAILQTDGQLKTGKDVAVACLLGAEEFGFSTAPLITLGCIMMRKCHTNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMVGRSDMLEVDPEVVKSNEKLENIDLSLILKPAAEIRPGAAQYCVEKQDHGLDMALDNKLIALSKAALEKEVRVFIETPIQNTNRAVGTMLSHEVTKRYHMKGLPAGTIHVKLTGSAGQSLGAFLCPGITLELEGDSNDYVGKGLSGGKIVVYPPRDSTFIPEDNIVIGNVALYGATIGEAYFNGMAAERFCVRNSGAQAVVEGIGDHGCEYMTGGTVVILGKTGRNFAAGMSGGIAYVYDIDGKFSVRCNHELVDLYHVEEEEDITTLKMMIEQHRLNTGSVVARDILSNFDTLLPKFVKVFPRDYKRVLDNMKAEKAAAKLAKEPKISNGVSVTTKKVQPEQSTNRPTRVSNAKKYRGFISYERESISYRDPNERVKDWKEVAIESVPGPLLNTQSARCMDCGTPFCHQESSGAGCPLGNKIPEFNELVHQNRWREALDRLLETNNFPEFTGRVCPAPCEGSCVLGIIENPVSIKSIECAIIDKGFEEGWMVPRPPLQRTGKKVAIIGSGPAGLAAADQLNKMGHFVTVFERADRIGGLMMYGVPNMKTDKIEIVQRRVNLMAEEGITFVVNANVGSDPLYSIERLRSENDAVILACGATKPRDLGIPGRELSGVHFAMEFLHANTKSLLDSNLEDGRYISAKGKKVVVIGGGDTGTDCIGTSIRHGCTSIVNLELLTKPPSKRAADNPWPQWPRIFRVDYGHQEASSKFGNDPRTYEVLTKRFIGDENGNVKALEVVRVKWEKVDGRFQFKEIEGSNETIEADLVLLAMGFLGPEATIAEKLGLEKDNRSNFKAQFGNFATSVDGIFAAGDCRRGQSLVVWAITEGRQAAAAVDKYLSRNEQDAAEDITPSGAGFVQPVAA", "sequence_length": 2167, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dfc085a2b04dae702888503844d90f24860516cca4ee256cc43b92cbdc0884ed", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0JKD0.json", "taxon_id": "39947", "uniprot_accession": "Q0JKD0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fer4-20-pf14691.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14691", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fer4-20-pf14691.yaml" } ], "pfam_ids": [ "PF00310", "PF01493", "PF01645", "PF04898", "PF07992", "PF14691" ], "protein_name": "Glutamate synthase [NADH]", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPVLKSDNFDPLEEAYEGGTIQNYNDEHHLHKSWANVIPDKRGLYDPDYEHDACGVGFVANKHGEQSHKIVTDARYLLVNMTHRGAVSSDGNGDGAGILLGIPHEFMKREFKLDLDLDIPEMGKYAVGNVFFKKNEKNNKKNLIKCQKIFEDLAASFNLSVLGWRNVPVDSTILGDVALSREPTILQPLLVPLYDEKQPEFNETKFRTQLYLLRKEASLQIGLENWFYVCSLNNTTIVYKGQLTPAQVYNYYPDLTNAHFKSHMALVHSRFSTNTFPSWDRAQPLRWLAHNGEINTLRGNKNWMRSREGVMNSATFKDELDKLYPIIEEGGSDSAALDNVLELLTINGTLSLPEAVMMMVPEAYHKDMDSDLKAWYDWAACLMEPWDGPALLTFTDGRYCGAILDRNGLRPCRYYITSDDRVICASEVGVIPIENSLVVQKGKLKPGDLFLVDTQLGEMVDTKKLKSQISKRQDFKSWLSKVIKLDDLLSKTANLVPKEFISQDSLSLKVQSDPRLLANGYTFEQVTFLLTPMALTGKEALGSMGNDAPLACLNENPVLLYDYFRQLFAQVTNPPIDPIREANVMSLECYVGPQGNLLEMHSSQCDRLLLKSPILHWNEFQALKNIEAAYPSWSVAEIDITFDKSEGLLGYTDTIDKITKLASEAIDDGKKILIITDRKMGANRVSISSLIAISCIHHHLIRNKQRSQVALILETGEAREIHHFCVLLGYGCDGVYPYLAMETLVRMNREGLLRNVNNDNDTLEEGQILENYKHAIDAGILKVMSKMGISTLASYKGAQIFEALGLDNSIVDLCFTGTSSRIRGVTFEYLAQDAFSLHERGYPSRQTISKSVNLPESGEYHFRDGGYKHVNEPTAIASLQDTVRNKNDVSWQLYVKKEMEAIRDCTLRGLLELDFENSVSIPLEQVEPWTEIARRFASGAMSYGSISMEAHSTLAIAMNRLGAKSNCGEGGEDAERSAVQENGDTMRSAIKQVASARFGVTSYYLSDADEIQIKIAQGAKPGEGGELPAHKVSKDIAKTRHSTPNVGLISPPPHHDIYSIEDLKQLIYDLKCANPRAGISVKLVSEVGVGIVASGVAKAKADHILVSGHDGGTGAARWTSVKYAGLPWELGLAETHQTLVLNDLRRNVVVQTDGQLRTGFDIAVAVLLGAESFTLATVPLIAMGCVMLRRCHLNSCAVGIATQDPYLRSKFKGQPEHVINFFYYLIQDLRQIMAKLGFRTIDEMVGHSEKLKKRDDVNAKAINIDLSPILTPAHVIRPGVPTKFTKKQDHKLHTRLDNKLIDEAEVTLDRGLPVNIDASIINTDRALGSTLSYRVSKKFGEDGLPKDTVVVNIEGSAGQSFGAFLASGITFILNGDANDYVGKGLSGGIIVIKPPKDSKFKSDENVIVGNTCFYGATSGTAFISGSAGERFGVRNSGATIVVERIKGNNAFEYMTGGRAIVLSQMESLNAFSGATGGIAYCLTSDYDDFVGKINKDTVELESLCDPVEIAFVKNLIQEHWNYTQSDLAARILGNFNHYLKDFVKVIPTDYKKVLLKEKAEAAKAKAKATSEYLKKFRSNQEVDDEVNTLLIANQKAKEQEKKKSITISNKATLKEPKVVDLEDAVPDSKQLEKNSERIEKTRGFMIHKRRHETHRDPRTRVNDWKEFTNPITKKDAKYQTARCMDCGTPFCLSDTGCPLSNIIPKFNELLFKNQWKLALDKLLETNNFPEFTGRVCPAPCEGACTLGIIEDPVGIKSVERIIIDNAFKEGWIKPCPPSTRTGFTVGVIGSGPAGLACADMLNRAGHTVTVYERSDRCGGLLMYGIPNMKLDKAIVQRRIDLLSAEGIDFVTNTEIGKTISMDELKNKHNAVVYAIGSTIPRDLPIKGRELKNIDFAMQLLESNTKALLNKDLEIIREKIQGKKVIVVGGGDTGNDCLGTSVRHGAASVLNFELLPEPPVERAKDNPWPQWPRVMRVDYGHAEVKEHYGRDPREYCILSKEFIGNDEGEVTAIRTVRVEWKKSQSGVWQMVEIPNSEEIFEADIILLSMGFVGPELINGNDNEVKKTRRGTIATLDDSSYSIDGGKTFACGDCRRGQSLIVWAIQEGRKCAASVDKFLMDGTTYLPSNGGIVQRDYKLLKELASQV", "sequence_length": 2145, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c2612df9fb626266e1f42cee878884c59160587f2a70f8fb335c1a8331a6f3d5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q12680.json", "taxon_id": "559292", "uniprot_accession": "Q12680", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/archaeal-type-gltb-domain-this-domain-shares-sequence-similarity-with--cd00981.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd00981", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/archaeal-type-gltb-domain-this-domain-shares-sequence-similarity-with--cd00981.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glutamate-synthase-alpha-subunit-c-terminal-ipr002489.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002489", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glutamate-synthase-alpha-subunit-c-terminal-ipr002489.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/glutamate-synthase-alpha-subunit-c-terminal-domain-superfamily-ipr036485.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036485", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/glutamate-synthase-alpha-subunit-c-terminal-domain-superfamily-ipr036485.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/glutamate-synthase-alpha-subunit-c-terminal-domain-2-160-20-60.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.160.20.60", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/glutamate-synthase-alpha-subunit-c-terminal-domain-2-160-20-60.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q58745", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01493" ], "protein_name": "Uncharacterized protein MJ1350", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7fb2559a0ce5c53e8b93d68f0c8393b8ddbe7111b126cd0957c5d6d9daa26c3c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKGMEEVVIDAKDMHYRELNEKIHEILRENPDIKKIVLKNVLGQRFIADGIQKKDLTIEIYGIPGGDLGMFMSGPTIIVHGNAEFAPGNTMDDGTIVIYGSSGDVTAHSMRGGKVFVRGDVGYRSGIHMKAYKDKVPVLVIGGRAKDFLGEYMAGGIIIVLNIDEKGNDLGKVKGRMIGTGIHGGAIYIRGEIDKDQLGVAADIKEFTEEDLEKIKPYIEEFCKWFNLPEDVKNKLLNSKWTKIAPISKRPFGKLYTPDLM", "sequence_length": 261, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7fb2559a0ce5c53e8b93d68f0c8393b8ddbe7111b126cd0957c5d6d9daa26c3c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58745.json", "taxon_id": "243232", "uniprot_accession": "Q58745", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glu-syn-central-pf04898.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glu-syn-central-pf04898.yaml" } ], "pfam_ids": [ "PF00310", "PF01493", "PF01645", "PF04898" ], "protein_name": "Ferredoxin-dependent glutamate synthase 2, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALQSPGATGASSSVSRLLSSAKLSSTKTIFSVDFVRSYCISKGTKRRNELSGFRGYSPLLKSSLRSPFSVKAILNSDRAAGDASSSFSDLKPQVAYLEDIISERGACGVGFIANLENKATHKIVNDALIALGCMEHRGGCGSDNTSGDGSGLMTSIPWDLFNEWAEKQGIASFDRTHTGVGMLFLPRDDNIRKEAKKVITSIFEKEGLEVLGWRDVPVEASIVGHNAKQTMPNTEQVFVRIVKDDKVDDVERELYICRKLIERAVASESWASELYFSSLSNQTIVYKGMLRSEVLGLFYPDLQNDLYKSPFAIYHRRFSTNTSPRWHLAQPMRFLGHNGEINTIQGNLNWMTSREASLRSPVWHGRENDIRPISNPKASDSANLDSAAELLIRSGRTPEESLMILVPEAYKNHPTLMIKYPEAVDFYDYYKGQMEPWDGPALVLFSDGKTVGACLDRNGLRPARYWRTSDNVVYVASEVGVLPMDESKVTMKGRLGPGMMISVDLENGQVYENTEVKKRVASYNPYGKWVSENLRNLKPSNYLSSAILETDETLRRQQAFGYSSEDVQMVIESMAAQGKEPTFCMGDDTPVAVLSQKPHMLYDYFKQRFAQVTNPAIDPLREGLVMSLEVNIGKRGNILEVGPQNVSQVVLSGPVLNERELEGLLGDPLLKSQILPTFFDIRRGIEGSLKKGLLKLCEAADEAVRNGSQVLVLSDRSDNPEPTRPAIPMLLAVGAVHQHLIQNGLRMSASIIADTAQCFSTHHFACLIGYGASAICPHLALETCRQWRLSNKTVNMMRNGKMPTVTMEQAQKNYRKAVNTGLLKVLSKMGISLFSSYCGAQIFEIYGLGNEVVEFSFRGSASQIGGLTLDELARETLTFWVRAFSEDTAKRLENFGFIQFRPGGEYHGNNPEMSKLLHKAVREKSETAYAVYQQHLANRPITVFRDLLEFKSDRNPIPVGKVEPASSIVERFCTGGMSLGAISRETHETIAIAMNRLGGKSNSGEGGEDPIRWKPLTDVVDGYSSTLPHLKGLRNGDTATSAIKQVASGRFGVTPTFLVNADQLEIKVAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPKAKVSVKLVSETGIGTVASGVAKANADIIQISGYDGGTGASPISSIKHAGGPWELGLAETQKTLIGNGLRERVIIRVDGGFKSGVDVLIAAAMGADEYGFGTLAMIATGCIMARICHTNNCPVGVASQREELRARFPGLPGDLVNFFLYIAEEVRGILAQLGYEKLDDIIGRTDLLKARDISLVKTHLDLSYLLSSVGLPKRSSTSIRKQEVHSNGPVLDDTLLQDPEIMDAIENEKTVHKTMSIYNVDRSVCGRIAGVIAKKYGDTGFAGQLNLTFTGSAGQSFACFLTPGMNIRLVGEANDYVGKGMAGGEVVILPVESTGFRPEDATIVGNTCLYGATGGLLFVRGKAGERFAVRNSLAQAVVEGTGDHCCEYMTGGCVVILGKVGRNVAAGMTGGLAYILDEDNTLLPKMNKEIVKIQRVTSPVGQTQLKSLIQAHVEKTGSSKGAMIVEEWDKYLAMFWQLVPPSEEDTPEANSDHILKTTTGDEEQVSSTLAEK", "sequence_length": 1629, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "56bd64ccba191a1317db0394650f42d1c5df5a7a69f95ec2e1a648b35516255e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9T0P4.json", "taxon_id": "3702", "uniprot_accession": "Q9T0P4", "uniprot_release": "2026_03" } ], "pfam_id": "PF01493", "short_name": "GXGXG", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 12, "discovery_scanned": true, "example_count": 12, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/nad-kinase-activity-go0003951.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0003951", "section": "canonical_examples", "url": 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"MSSTYKLNHTDSFANGDAKSLLPNPENGFTHLTSLAQSEKAVQELLLQQTPMQATDDHLVEFSEALRTVAKALRGAAEGKALAQAEAAEWKRRYELERSKNVELQHKELSNGVCADESNGQRMEHLAKSPRLYAQEISSNGMETICSHEVLQDGGFNSFNNKLKRKASFKLSWGCKGMANDQHKKEIVSFERGNISTAERSSKQISLTWESDPQTVLIITKPNSTSVRVLSVDMVRWLRTQKGLNIYVEPRVKEELLSESSSFNFVQTWEDDKEISLLHTKVDLLITLGGDGTVLWAASMFKGPVPPIVPFSMGSLGFMTPFHSEQYRDCLEAILKGPISITLRHRLQCHIIRDKATHEYEPEETMLVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTVRVQVPFNSRSSAWVSFDGKDRKQLEAGDALVCSMAPWPVSTACQVESTNDFLRSIHDGLHWNLRKTQSADGP", "sequence_length": 524, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "58ad252483f908b1a98e731d17bbe99628524a04fd2a63a47788a4ff8e32f20c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q56YN3.json", "taxon_id": "3702", "uniprot_accession": "Q56YN3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nad-kinase-pf01513.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01513", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nad-kinase-pf01513.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q58327", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00459", "PF01513", "PF20143" ], "protein_name": "Bifunctional NADP phosphatase/NAD kinase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "bbe177a0a76c4c51d3327de081dc853b7542476e493c2b88d35f4501bc5e5248", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVIMEGFKIAMKVIDEIDKKIKPLIGWEKADEVVKIGADGTPTKRIDVIAENMAINILEKFSGGILISEEIGLKVVGDELEYIFILDPIDGTYNALKSIPIYSTSIAVAKIKGEDKKLIRENINNIDWIKSFIANKYTINDLYVGIVKNLATGDLYYAIKGEGSFLEKDGEKIKIETKNIKDLKEASVGLFVYGLSNDLLEFLKERKVRRVRLFGSMALEMCYVVSGALDAYINVNENSRLCDIAGAYVICREGNAIVTNKNGKPLNMKLHLMERTSLIVSNKYLHKKLIALFGNRWIIKPVKFGIVVREDKEEAINLAIEICKYLKDKNIPFCVEDFLRERVGGDKFDISAISHIIAIGGDGTILRASRLVNGETIPIIAVNMGKVGFLAEFCKDEVFEIIDKVIYGEYEIEKRSKLSCKIIKDNRVIKTPSALNEMVVITKNPAKILEFDVYVNDTLVENVRADGIIVSTPTGSTAYSLSAGGPIVEPNVDCFIISPICPFKLSSRPLVISASNRIKLKLKLEKPALLVIDGSVEYEINKDDELIFEKSDSYAYFVKGQSFYNKLSRCLGIK", "sequence_length": 574, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "bbe177a0a76c4c51d3327de081dc853b7542476e493c2b88d35f4501bc5e5248", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q58327.json", "taxon_id": "243232", "uniprot_accession": "Q58327", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nad-kinase-pf01513.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01513", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nad-kinase-pf01513.yaml" } ], "pfam_ids": [ "PF01513" ], "protein_name": "NAD kinase 2, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTCYRGFLLGSCRRVAGGRAALRGSGSGADGRRHLGHGQPRELAGGGSPADGGFRPSRVVVVAKTTRYEFEQQRYRYAELSEEDLKQLLALKGSSYSGLLERHHIHTKNVEHIIDSLRDEGIEVRLVKRREYDEETVRWADAVIAAGGDGTMLLAASKVLDRLKPVIGVNTDPERSEGHLCLPVRYTHSFPEALRRFSRGEFRWLWRQRIRLYLEGTGINPTPVDLHEQQLSLNQHSRAFNIERAHDERSEASGPQLLPVRALNEVFIGESLSSRMPYCWAVAVDNLRRDIPNLKGLASYYEISVDDGPWEKQKSSGLNLCTGTGSKAWSFNINRVAAQAVEDVLHIARRQGNLTLPLNKDLVEKVTNEYNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSRCWDACMVVDGGTSFEFNDGAIASMMINKEDELRTVILEQ", "sequence_length": 452, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c10e21c5e7a5aa634b1b4ef32f920b49771918464fcabcdf71a583bdcd2cf2c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C5H8.json", "taxon_id": "10090", "uniprot_accession": "Q8C5H8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/dsp-ptpase-phosphatase-fused-to-nad-kinase-ipr055214.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055214", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dsp-ptpase-phosphatase-fused-to-nad-kinase-ipr055214.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ptp-nadk-pf22741.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22741", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ptp-nadk-pf22741.yaml" } ], "pfam_ids": [ "PF01513", "PF20143", "PF22741" ], "protein_name": "NAD kinase 2, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFLCFCPCHVPIMSRLSPATGISSRLRFSIGLSSDGRLIPFGFRFRRNDVPFKRRLRFVIRAQLSEAFSPDLGLDSQAVKSRDTSNLPWIGPVPGDIAEVEAYCRIFRSAERLHGALMETLCNPVTGECRVPYDFSPEEKPLLEDKIVSVLGCILSLLNKGRKEILSGRSSSMNSFNLDDVGVAEESLPPLAVFRGEMKRCCESLHIALENYLTPDDERSGIVWRKLQKLKNVCYDAGFPRSDNYPCQTLFANWDPIYSSNTKEDIDSYESEIAFWRGGQVTQEGLKWLIENGFKTIVDLRAEIVKDTFYQTALDDAISLGKITVVQIPIDVRMAPKAEQVELFASIVSDSSKRPIYVHSKEGVWRTSAMVSRWKQYMTRPITKEIPVSEESKRREVSETKLGSNAVVSGKGVPDEQTDKVSEINEVDSRSASSQSKESGRFEGDTSASEFNMVSDPLKSQVPPGNIFSRKEMSKFLKSKSIAPAGYLTNPSKILGTVPTPQFSYTGVTNGNQIVDKDSIRRLAETGNSNGTLLPTSSQSLDFGNGKFSNGNVHASDNTNKSISDNRGNGFSAAPIAVPPSDNLSRAVGSHSVRESQTQRNNSGSSSDSSDDEAGAIEGNMCASATGVVRVQSRKKAEMFLVRTDGVSCTREKVTESSLAFTHPSTQQQMLLWKTTPKTVLLLKKLGQELMEEAKEAASFLYHQENMNVLVEPEVHDVFARIPGFGFVQTFYIQDTSDLHERVDFVACLGGDGVILHASNLFKGAVPPVVSFNLGSLGFLTSHPFEDFRQDLKRVIHGNNTLDGVYITLRMRLRCEIYRKGKAMPGKVFDVLNEIVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSAKLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIYMSQHPLPTVNKSDQTGDWFRSLIRCLNWNERLDQKAL", "sequence_length": 985, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "440936981a029ad24b54a3cf323097e0ab5d301ee69e4dc6b2faa3416859ae87", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9C5W3.json", "taxon_id": "3702", "uniprot_accession": "Q9C5W3", "uniprot_release": "2026_03" } ], "pfam_id": "PF01513", "short_name": "NAD_kinase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf16-pf01519.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01519", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf16-pf01519.yaml" } ], "pfam_ids": [ "PF01519" ], "protein_name": "UPF0134 protein MPN_010", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYSPSLNDIKSILNKYTSKDYELKCENRYDGKLELWLKGVFEEIVKTPGTRYVTHKQLDEKLKNFVTKTEFKEFQTVVMESFAVQNQNIDAQGEQIKELQVEQKAQGKTLQLILEALQGINKRLDNLESK", "sequence_length": 131, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ef1e7b188d81248a84dac140d9da1bd8868c43eda85e09b16256fcdd1d8bb1ae", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75103.json", "taxon_id": "272634", "uniprot_accession": "P75103", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf16-pf01519.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01519", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf16-pf01519.yaml" } ], "pfam_ids": [ "PF01519" ], "protein_name": "UPF0134 protein MPN_501", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKEKIPFYNEKEFHDMVKKTKKGTFSGWYIIDKDNNSVEFSGKFNRQFKLNKPVIPVNTEYVTRKEFNEYKNSNDQRLTKIETTLAAQGEQINKLTQTVEKQGEQINQLVQVVLLHGEQINKLTQTVEKQGEQIKELQIEQKAQGETLKLILQTLQKMSDRLDKMEVKMDKMEVKMDKMEVKMDKMEKRIDKLESK", "sequence_length": 196, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3dc428d83746cbf696f8ec0c9bc1d19ba0cb5a028f584eb8d16697eaccc1a284", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75286.json", "taxon_id": "272634", "uniprot_accession": "P75286", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf16-pf01519.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01519", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf16-pf01519.yaml" } ], "pfam_ids": [ "PF01519" ], "protein_name": "UPF0134 protein MPN_484", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFYGNLNHMEKRKSGYVTQKQFNDFKNSNNQRLIKIENTLVSQGEQISQLIKVSILQGEQINKLTETVEKQGEQIQTQGETLKLILETLQVINKRLDRLESK", "sequence_length": 103, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "480b57851df627c7a966a7ea6457669a0e27510c4901a2ebd50b537623185307", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75301.json", "taxon_id": "272634", "uniprot_accession": "P75301", "uniprot_release": "2026_03" } ], "pfam_id": "PF01519", "short_name": "DUF16", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 55, "discovery_scanned": true, "example_count": 55, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/e2-motif-ipr046849.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/e2-motif-ipr046849.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF14432", "PF20430", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At4g21065", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSPFSETSVLLLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW", "sequence_length": 595, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70268310b114acc616abda88b37ef4fe471b113be6f9991c0730e77daa0f2395", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A8MQA3.json", "taxon_id": "3702", "uniprot_accession": "A8MQA3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/at1g68980-like-tpr-repeats-ipr057440.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057440", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/at1g68980-like-tpr-repeats-ipr057440.yaml" } ], "pfam_ids": [ "PF01535", "PF25245" ], "protein_name": "Pentatricopeptide repeat-containing protein At4g17616", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFRKRNLVLESFRRFDSGNVETLISWVLCSRTSKPSLFCTSVKPARLNWEVSSQVILKKKLETALKDHRVDDAWDVFKDFKRLYGFPESVIMNRFVTVLSYSSDAGWLCKASDLTRLALKQNPGMLSGDVLTKLSLSLARAQMVESACSILRIMLEKGYVLTSDVLRLVVMHMVKTEIGTCLASNYLVQVCDRFVEFNVGKRNSSPGNVVKPDTVLFNLVLGSCVRFGFSLKGQELIELMAKVDVVADAYSIVIMSCIYEMNGMRDELRKFKEHIGQVPPQLLGHYQHFFDNLLSLEFKFDDIGSAGRLALDMCKSKVLVSVENLGFDSEKPRVLPVGSHHIRSGLKIHISPKLLQRDSSLGVDTEATFVNYSNSKLGITNKTLAKLVYGYKRHDNLPELSKLLFSLGGSRLCADVIDACVAIGWLEAAHDILDDMNSAGYPMELATYRMVLSGYYKSKMLRNAEVLLKQMTKAGLITDPSNEIVVSPETEEKDSENTELRDLLVQEINAGKQMKAPSMLYELNSSLYYFCKAKMQGDALITYRKIPKMKIPPTVQSFWILIDMYSSLGMYREITIVWGDIKRNIASKNLKTTQDLLEKLVVNFLRGGYFERVMELISYMKENDMYNDLTMYKNEYLKLHKNLYRTLKASDAVTEAQAQRLEHVKTFRKLVGIV", "sequence_length": 674, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4d80e703695d3e1080ff2868c52c6485a59802f73ef0d46eeb88c55e37660dfd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B3H672.json", "taxon_id": "3702", "uniprot_accession": "B3H672", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chloroplast-mrna-processing-go0010239.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chloroplast-mrna-processing-go0010239.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mitochondrial-15s-rrna-processing-factor-ccm1-like-tpr-repeats-ipr057027.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mitochondrial-15s-rrna-processing-factor-ccm1-like-tpr-repeats-ipr057027.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O04647", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01535", "PF13041", "PF13812", "PF23276" ], "protein_name": "Pentatricopeptide repeat-containing protein At5g27270", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c49f68428dbd649c0ef01639cf33462f24b0e1d7e8b49077e6f32cd409cee34f", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKSDFLTSTTHFNPSIFLPKIPSRNSRISIKSSSSSSKVRPDPWSLSDGNPEKPKPRYERPKHPLSDDDARRIIKKKAQYLSTLRRNQGSQAMTPKWIKRTPEQMVQYLEDDRNGQMYGKHVVAAIKTVRGLSQRRQGSDDMRFVMSSFVAKLSFRDMCVVLKEQRGWRQVRDFFSWMKLQLSYRPSVVVYTIVLRLYGQVGKIKMAEETFLEMLEVGCEPDAVACGTMLCTYARWGRHSAMLTFYKAVQERRILLSTSVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEVIRGLIIRIYGKLGLFHDAQSMFEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIEMMKTRDIPLSRFAYIVMLQCYAKIQNVDCAEEAFRALSKTGLPDASSCNDMLNLYTRLNLGEKAKGFIKQIMVDQVHFDIELYKTAMRVYCKEGMVAEAQDLIVKMGREARVKDNRFVQTLAESMHIVNKHDKHEAVLNVSQLDVMALGLMLNLRLKEGNLNETKAILNLMFKTDLGSSAVNRVISSFVREGDVSKAEMIADIIIRLGLRMEEETIATLIAVYGRQHKLKEAKRLYLAAGESKTPGKSVIRSMIDAYVRCGWLEDAYGLFMESAEKGCDPGAVTISILVNALTNRGKHREAEHISRTCLEKNIELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQLDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEALSLFSEMQKKGIKPGTPSYNMMVKICATSRLHHEVDELLQAMERNGRCTDLSTYLTLIQVYAESSQFAEAEKTITLVKEKGIPLSHSHFSSLLSALVKAGMMEEAERTYCKMSEAGISPDSACKRTILKGYMTCGDAEKGILFYEKMIRSSVEDDRFVSSVVEDLYKAVGKEQDV", "sequence_length": 1038, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c49f68428dbd649c0ef01639cf33462f24b0e1d7e8b49077e6f32cd409cee34f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O04647.json", "taxon_id": "3702", "uniprot_accession": "O04647", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/e-motif-ipr046848.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046848", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/e-motif-ipr046848.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At2g45350, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLVFKSTMECSISSTIHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHVCSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFVDSIEVSSTL", "sequence_length": 613, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "13b77ccc8b9b6161f7732adf30608a12756eec75d6771deb72cc22548806d203", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O22137.json", "taxon_id": "3702", "uniprot_accession": "O22137", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/e-motif-ipr046848.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046848", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/e-motif-ipr046848.yaml" } ], "pfam_ids": [ "PF01535", "PF12854", "PF13041", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At1g09190", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEIERKLLRLLHGHNTRTRLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVKLAEVAAMELVKIEPGNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNRLRKSTGQSTICDVSV", "sequence_length": 484, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c61bab9d1cf7215df6ac6f305e82eae72ad1aca010ca6581fac46b7a86cc2a93", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O80488.json", "taxon_id": "3702", "uniprot_accession": "O80488", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chloroplast-mrna-processing-go0010239.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chloroplast-mrna-processing-go0010239.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF13812" ], "protein_name": "Pentatricopeptide repeat-containing protein At2g35130", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLVAGNALNCLFIDSSGFQRYLGFGVTNLNGATVKSYKQEGFVIDERGKLKRFNRKKLSRKRCGSLRGRGWKYGSGFVDGIFPVLSPIAQKILSFIQKETDPDKVADVLGALPSTHASWDDLINVSVQLRLNKKWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKGVTVSSLVPKLMAKSLTVN", "sequence_length": 591, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e436778fecde141ff06fb97901a2f2da9850dff49374e8d1ac3cde613d3b8ee5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O82178.json", "taxon_id": "3702", "uniprot_accession": "O82178", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/at1g68980-like-tpr-repeats-ipr057440.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057440", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/at1g68980-like-tpr-repeats-ipr057440.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-at1g68980-pf25245.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25245", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-at1g68980-pf25245.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF13812", "PF25245" ], "protein_name": "Pentatricopeptide repeat-containing protein At1g69290", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFRKTLNSISRRHFSSSSPESPSLYSFLKPSLFSHKPITLSPSLSPPQNPKTLTPDQKSSFESTLHDSLNAHYTDEAWKAFRSLTAASSLPEKRLINSLITHLSGVEGSGESISHRLKRAFASAAYVIEKDPILLEFETVRTLLESMKLAKAAGPALALVKCMFKNRYFVPFDLWGHLVIDICRENGSLAPFLKVFKESCRISVDEKLEFMKPDLVASNAALEACCRQMESLADAENVIESMAVLGVKPDELSFGFLAYLYARKGLREKISELENLMDGFGFASRRILYSNMISGYVKSGDLDSVSDVILHSLKEGGEESSFSVETYCELVKGFIESKSVKSLAKVILEAQKLESSYVGVDSSVGFGIINACVNLGFSDKAHSILEEMIAQGGGSVGIGVYVPILKAYCKEYRTAEATQLVTEISSSGLQLDVEISNALIEASMTNQDFISAFTLFRDMRENRVVDLKGSYLTIMTGLLENQRPELMAAFLDEVVEDPRVEVNSHDWNSIIHAFCKSGRLEDARRTFRRMVFLRYEPNNQTYLSLINGYVSGEKYFNVLLLWNEIKGKISSVEAEKRSRLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKWRYKQAFMETHKKLRLPKLRKRNYKKMESLVAFKNWAGLNT", "sequence_length": 658, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c3e5af1136b42bab7a7b7cbbff8a4ba516d092ab8f6ca12234595d2161e75a82", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C7R4.json", "taxon_id": "3702", "uniprot_accession": "P0C7R4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mitochondrial-15s-rrna-processing-factor-ccm1-like-tpr-repeats-ipr057027.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mitochondrial-15s-rrna-processing-factor-ccm1-like-tpr-repeats-ipr057027.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF23276" ], "protein_name": "Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFSRIALLCQRFSRQQQQRQLLHRPLTTKLDNTRFLHPNQSKLAQNLIVIFTRQPFSPDDPELLILSPELNTKVVETVLNGFKRWGLAYLFFNWASKQEGYRNDMYAYNAMASILSRARQNASLKALVVDVLNSRCFMSPGAFGFFIRCLGNAGLVDEASSVFDRVREMGLCVPNAYTYNCLLEAISKSNSSSVELVEARLKEMRDCGFHFDKFTLTPVLQVYCNTGKSERALSVFNEILSRGWLDEHISTILVVSFCKWGQVDKAFELIEMLEERDIRLNYKTYCVLIHGFVKESRIDKAFQLFEKMRRMGMNADIALYDVLIGGLCKHKDLEMALSLYLEIKRSGIPPDRGILGKLLCSFSEESELSRITEVIIGDIDKKSVMLLYKSLFEGFIRNDLVHEAYSFIQNLMGNYESDGVSEIVKLLKDHNKAILPDSDSLSIVINCLVKANKVDMAVTLLHDIVQNGLIPGPMMYNNIIEGMCKEGRSEESLKLLGEMKDAGVEPSQFTLNCIYGCLAERCDFVGALDLLKKMRFYGFEPWIKHTTFLVKKLCENGRAVDACKYLDDVAGEGFLGHMVASTAAIDGLIKNEGVDRGLELFRDICANGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENINAGFGIFREMVHKGRFPVSVDRNYMLAVNVTSKFVEDLRTSCYLTCLIKDGRIPILAVVSRI", "sequence_length": 832, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "91c631e8caeba605a0970abfa8f11e4ddac1ef64320519ce415a447f7f1fa27e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C8Q6.json", "taxon_id": "3702", "uniprot_accession": "P0C8Q6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mitochondrial-mrna-polyadenylation-go0097222.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097222", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitochondrial-mrna-polyadenylation-go0097222.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-mitochondrial-mrna-catabolic-process-go1905638.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905638", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-mitochondrial-mrna-catabolic-process-go1905638.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-mitochondrial-translation-go0070129.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070129", "section": "canonical_examples", "url": 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"qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q0WSH6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01535", "PF13041", "PF14432", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At4g14850", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "aeec39279abc27b01cf9b9f7b816b03fad9520f920a907b1b4ab8dfcccbf71c3", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSLLSADALGLLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW", "sequence_length": 684, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "aeec39279abc27b01cf9b9f7b816b03fad9520f920a907b1b4ab8dfcccbf71c3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0WSH6.json", "taxon_id": "3702", "uniprot_accession": "Q0WSH6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chloroplast-rna-modification-go1900865.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1900865", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chloroplast-rna-modification-go1900865.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF13812" ], "protein_name": "Pentatricopeptide repeat-containing protein At1g10910, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METPLLVGLELRCPPHLFNTHSRPSSSLSIPALSLRILTPTAATTSSAVIELPANVAEAPRSKRHSNSYLARKSAISEVQRSSDFLSSLQRLATVLKVQDLNVILRDFGISGRWQDLIQLFEWMQQHGKISVSTYSSCIKFVGAKNVSKALEIYQSIPDESTKINVYICNSILSCLVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVKNGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSIFDDMKGKGVRSDGYANSIMISALCRSKRFKEAKELSRDSETTYEKCDLVMLNTMLCAYCRAGEMESVMRMMKKMDEQAVSPDYNTFHILIKYFIKEKLHLLAYQTTLDMHSKGHRLEEELCSSLIYHLGKIRAQAEAFSVYNMLRYSKRTICKELHEKILHILIQGNLLKDAYIVVKDNAKMISQPTLKKFGRAFMISGNINLVNDVLKVLHGSGHKIDQVQFEIAISRYISQPDKKELLLQLLQWMPGQGYVVDSSTRNLILKNSHMFGRLLIAEILSKHHVASRPMIKSRPEQKFRCK", "sequence_length": 664, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "827a83a746268cb1381484c6411df71bdd543787bdb02672bd670965427eb894", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0WVV0.json", "taxon_id": "3702", "uniprot_accession": "Q0WVV0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/tetratricopeptide-repeat-domain-1-25-40-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.25.40.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tetratricopeptide-repeat-domain-1-25-40-10.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF13812", "PF14432", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At1g11290, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSQLVQFSTVPQIPNPPSRHRHFLSERNYIPANVYEHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW", "sequence_length": 809, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8be8aa7f5c85e380fd6d3f441ad2c0b38893c23061b00eb8a4a764bcee4eeee6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3E6Q1.json", "taxon_id": "3702", "uniprot_accession": "Q3E6Q1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/tetratricopeptide-repeat-domain-1-25-40-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.25.40.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tetratricopeptide-repeat-domain-1-25-40-10.yaml" } ], "pfam_ids": [ "PF01535", "PF12854", "PF13041", "PF14432", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At1g09410, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSQILLRRTYSTTIPPPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW", "sequence_length": 705, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8315ff76a547b42c66fbb3deb526ea5b50b39ee862152d8919ee6526bc9e3f2d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q56XI1.json", "taxon_id": "3702", "uniprot_accession": "Q56XI1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chloroplast-rna-processing-go0031425.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031425", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chloroplast-rna-processing-go0031425.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/prop1-like-ppr-domain-ipr033443.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033443", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/prop1-like-ppr-domain-ipr033443.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF13812", "PF17177" ], "protein_name": "Pentatricopeptide repeat-containing protein At3g18110, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVSAGALAFPALSVRATLNPEIKDEQANISSTTSSSQKFTYSRASPAVRWPHLNLREIYDSTPSQTLSSPVSPIAGTPDSGDVVDSIASREEQKTKDETAVATRRRRVKKMNKVALIKAKDWRERVKFLTDKILSLKSNQFVADILDARLVQMTPTDYCFVVKSVGQESWQRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVLVKGECFDLAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHASGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLKALEDIGFDLPIRLLAGRPELLVSEVDGWFEKLKSIEDNAALNFVNALLNLLWAFELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALVALTLWLDHMQDASLEGYPESPKSVVLITGTAEYNGISLDKTLKACLWEMGSPFLPCKTRTGLLVAKAHSLRMWLKDSPFCFDLELKDSVSLPESNSMDLIDGCFIRRGLVPAFNHIKERLGGFVSPKKFSRLALLPDEMRERVIKTDIEGHRQKLEKMKKKKMGNETNGINTRRKFVRSK", "sequence_length": 1440, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e3d395bdf6c044d6e9fd75640eb12a1ada3812d7ad6322e33cbde82beaea4612", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5G1S8.json", "taxon_id": "3702", "uniprot_accession": "Q5G1S8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/e2-motif-ipr046849.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/e2-motif-ipr046849.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF14432", "PF20430", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At3g49170, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAMISFSFPSPAKLPIKSQPSVSNRINVADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW", "sequence_length": 850, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ecc1f0da205ffd7811e89a5fd9289eae6884ede12e319312c595cb53ea115e12", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5G1T1.json", "taxon_id": "3702", "uniprot_accession": "Q5G1T1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-24-pf23276.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23276", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-24-pf23276.yaml" } ], "pfam_ids": [ "PF01535", "PF13812", "PF23276" ], "protein_name": "Leucine-rich PPR motif-containing protein, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSALLRPARWLLGAAAVPRLPLSLRLPAGGPGRLPSVVRVAAAGGRPAAGELLSQARLYAIVAEKKDLPEEPAPVRRSGSQFDWALMRLDNSVRRTGRITKGLLQKVFESTCRSGSPGSNQALLLLRSCGSLLPELSLAERTEFAHKIWDKLQQLGTVYDVSHYNALLKVYLQNEYRFSPTDFLAKMEGANIQPNRVTYQRLIAAYCSVGDIEGASKILGFMKTRDLPITEAVFSALVTGHARAGDMESAENILTVMKQAGIEPGPDTYLALLNAHAEKGDIDHVKQILEKVEKSDHYFMDRDFLQIIVSFSKAGYPQYVSEILEKITYERRSIPDAMNLILLLVTEKLEDTAFQVLLALPLARDETSSSFGSFFLRHCVTMDTPAEKLIDYCKRLRDAKVHSSSLQFTLHCALQANKTALAKAVMEALRDEGFPIRTHYFWPLLVGHQKTKNVQGIIDILKIMKEMGVDPDQETYINYVFPCFGSVQSARAALQENKCLPKSTTFAQAEVRNEAINGNLQNILSFLESNALPFSFNSLRGSLILGFRRSMNIDLWSKITELLYKDDRYCQKPPGPTEAVGYFLYNLIDSMSDSEVQAKEERLRQYFHQLREMNVKVSENIYKGICNLLDNYHVPELIKDVKVLVDREKIDSRKTSQFTSSDLESTLEKLKAEGHPVGDPLKQLILLLCSEENMQKALEVKAKYESDMVIGGYAALINLCCRHDNAEDALNLKQEFDRLDPSAVLDTAKYVALVKVLGKHGRVQDAINILKEMKEKDVVIKDAAVLSFFHILNGAALRGEIETVKQLHEAIVTLGLAKPSSNISFPLVTVHLEKDDLPAALEASIACHEKYKVLPRIHDVLCKLIEKGETDLIQKAMDFVSQEQGEMSMLYDLFFAFLQTGNYKEAKKIIETPGIRARPTRLQWFCDRCIANNQVETLEKLVELTEKLFECDRDQMYYNLLKLYKISGDWQRADAVWNKMQEENLIPRERTLRLLAGILKTSNQEVPFDVPELWFGDDRSSLSSSSPSAGDTVTEKMLLSDCRLKKSKDAYNIFLKAEKQDVVFSSEAYSTLVGLLLSKDDFTRAMHVKDFAETHIKGFTLNGAASSLLIIAQVRRDYLKVALETLKAALDLEQVPSELAVTRLIQALALQGDVKSIETIQKMVKGLDAIELSRMVFINNIALAQMKNNEIDAAIENIEHMLASENQTVEHQYFGLSYLFRKVIEEQMEPALEKLSIMSERLANQFALYKPVTDLFLQLVDSGKVDEARALLERCGAIAEQTSILSVFCLRTSQKPKKAPVLKTLLELIPELRENDRVYSCSMKSYVADKDVASAKALYEHLTAKNMKLDDLFLKRYASLLKDVGEPVPFTEPPESFGFYIKQLKEARENPS", "sequence_length": 1392, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "14816b61d1814004e4017b8ea7c29678c7798cf302e6a4a47ab9b38d2d9624c6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5SGE0.json", "taxon_id": "10116", "uniprot_accession": "Q5SGE0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mitochondrial-mrna-polyadenylation-go0097222.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097222", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitochondrial-mrna-polyadenylation-go0097222.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-mitochondrial-mrna-catabolic-process-go1905638.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905638", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-mitochondrial-mrna-catabolic-process-go1905638.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-mitochondrial-rna-catabolic-process-go0000961.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000961", "section": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/ppr-pf01535.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-24-pf23276.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23276", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-24-pf23276.yaml" } ], "pfam_ids": [ "PF01535", "PF13812", "PF23276" ], "protein_name": "Leucine-rich PPR motif-containing protein, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAALLRPARWLLGAAAAPRLPLSLRLPAGVPGRLSSVVRVAAVGSRPAAGERLSQARLYAIVAEKRDLQEEPAPVRKNSSQFDWALMRLDNSVRRTGRITKGLLQRVFESTCSSGSPGSNQALLLLRSCGSLLPELSLAERTEFAHKIWDKLQQLGVVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEGANIQPNRVTYQRLIAAYCNVGDIEGASKILGFMKTKDLPITEAVFSALVTGHARAGDMENAENILTVMKQAGIEPGPDTYLALLNAHAERGDIGQVRQILEKVEKSDHYFMDRDFLQVIFSFSKAGYPQYVSEILEKITYERRSIPDAMNLILFLATEKLEDTAFQVLLALPLSKDESSDNFGSFFLRHCVTLDLPPEKLIDYCRRLRDAKLHSSSLQFTLHCALQANRTALAKAVMEALREEGFPIRPHYFWPLLAGHQKTKNVQGIIDILKIMNKVGVDPDQETYINYVFPCFDSAQSVRAALQENECLLASSTFAQAEVKNEAINGNLQNILSFLESNTLPFSFSSLRNSLILGFRRSMNIDLWSKITELLYKDERYCSKPPGPAEAVGYFLYNLIDSMSDSEVQAKEERLRQYFHQLQEMNVKVPENIYKGICNLLNTYHVPELIKDIKVLVDREKVDSQKTSQVTSSDLESTLEKLKAEGQPVGSALKQLLLLLCSEENMQKALEVKAKYESDMVIGGYAALINLCCRHDNAEDAWNLKQEVDRLDASAILDTAKYVALVKVLGKHSRLQDAINILKEMKEKDVVIKDATVLSFFHILNGAALRGEIETVKQLHEAIVTLGLAKPSSNISFPLVTVHLEKGDLPAALEASIACHKKYKVLPRIHDVLCKLVEKGETDLIQKAMDFVSQEQGEMTMLYDLFFAFLQTGNYKEAKKIIETPGIRARPTRLQWFCDRCIASNQVEALEKLVELTEKLFECDRDQMYYNLLKLYKISSDWQRADAAWTKMQEENIIPRERTLRLLAEILKTSNQEVPFDVPELWFGDDRPSLSPSSRSAGEDVTEKTLLSNCKLKKSKDAYNIFLKAEKQNVVFSSETYSTLIGLLLSKDDFTQAMHVKDFAETHIKGFTLNDAANSLLIIRQVRRDYLKGALATLRAALDLKQVPSQIAVTRLIQALALKGDVESIEAIQRMVAGLDTIGLSKMVFINNIALAQMKNNKLDAAIENIEHLLASENQAIEPQYFGLSYLFRKVIEEQMEPALEKLSIMSERMANQFALYKPVTDLFLQLVDSGKVDEARALLERCGAIAEQSSLLSVFCLRTSQKPKKAPVLKTLLELIPELRDNDKVYSCSMKSYALDKDVASAKALYEYLTAKNLKLDDLFLKRYAALLKDVGEPVPFPEPPESFAFYIKQLKEARESPS", "sequence_length": 1392, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ca9ecbc8aa07f1b80b00d4acb3ff6093d643d1f63cf699512781eec7b5223b1d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PB66.json", "taxon_id": "10090", "uniprot_accession": "Q6PB66", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/laglidadg-2-pf03161.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03161", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/laglidadg-2-pf03161.yaml" } ], "pfam_ids": [ "PF01535", "PF03161", "PF13812" ], "protein_name": "Pentatricopeptide repeat-containing protein OTP51, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATTSPCAAPSPSLRCPLALSHPFASPPPPPALRLAGPKLLPGRLAVSPPPGIPAVASALESLILDLDDDEEDEDEETEFGLFQGEAWAAADEREAVRSPELVVPELEELPEQWRRSRIAWLCKELPAYKHSTFTRILNAQRKWITQDDATYVAVHCLRIRNNDAAFRVYSWMVRQHWFRFNFALATRVADCLGRDGKVEKCREVFEAMVKQGRVPAESTFHILIVAYLSVPKGRCLEEACTIYNQMIQMGGYKPRLSLHNSLFRALVSKTGGTAKYNLKQAEFVYHNVVTTNLDVHKDVYAGLIWLHSYQDVIDRERIIALRKEMKQAGFDEGIDVLVSVMRAFSKEGNVAETEATWHNILQSGSDLPVQAYVCRMEAYARTGEPMKSLDMFKEMKDKNIPPNVASYHKIIEIMTKALEVDIVEQLMNEFIESDMKHLMPAFLDLMYMYMDLDMHEKLELTFLKCIARCRPNRILYTIYLESLVKVGNIEKAEEVFGEMHNNGMIGTNTKSCNIMLRGYLSAEDYQKAEKVYDMMSKKKYDVQADSLEKLQSGLLLNKKVIKPKTVSMKLDQEQREILIGLLLGGTRMESYAQRGVHIVHFQFQEDSNAHSVLRVHIHERFFEWLSSASRSFDDGSKIPYQFSTIPHQHFSFFVDQFFLKGQPVLPKLIHRWLTPRVLAYWFMFGGSKLPSGDIVLKLSGGNSEGVERIVNSLHTQSLTSKVKRKGRFFWIGFQGSNAESFWRIIEPHVLNNFASLVTQEGSSIGSDGTQDTDTDSDDDMQMSDTERDE", "sequence_length": 790, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c1ff062c97b12331697beba4e6b9b5c3c0ee276f1e83ece954da949cf7219ba3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZHJ5.json", "taxon_id": "39947", "uniprot_accession": "Q6ZHJ5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chloroplast-rna-processing-go0031425.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031425", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chloroplast-rna-processing-go0031425.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/dyw-domain-ipr032867.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dyw-domain-ipr032867.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF14432", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At3g57430, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSCPLAFTFSLPSIFPFPSQLLPFSRHKHPYLLRATPTSATEDVASAVSGAPSIFISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW", "sequence_length": 890, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c29c007ead2b42fd0e4e20c9808f017c8664b70e8b6e76ba7c7f2cf99e3e2b42", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Y211.json", "taxon_id": "3702", "uniprot_accession": "Q7Y211", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-mitochondrial-mrna-catabolic-process-go1905639.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905639", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-mitochondrial-mrna-catabolic-process-go1905639.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At4g32430, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLLNYLHCNRSKSFLFQRFYSPYRIAHKLFDGSSQRNATTSINHSISESLRRNSPARALSIFKENLQLGYFGRHMDEVTLCLALKACRGDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNKDDAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETMPNEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDVGDTEGSLTMQGFSSGDKSHPKSDEIYRMVEIIGLEMNLEGKVAV", "sequence_length": 763, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "38fb9ec8ea8bcf00e0d7ea9fa5b9e881ca79d7e2454b63e36d5c930fb53e3f64", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q84MA3.json", "taxon_id": "3702", "uniprot_accession": "Q84MA3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chloroplast-rna-processing-go0031425.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031425", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chloroplast-rna-processing-go0031425.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/prop1-like-ppr-domain-ipr033443.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033443", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/prop1-like-ppr-domain-ipr033443.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/smr-domain-ipr002625.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/smr-domain-ipr002625.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/smr.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50828", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/smr.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/ppr-pf01535.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF01535", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/ppr-pf01535.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8GWE0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01535", "PF13041", "PF13812", "PF17177" ], "protein_name": "Pentatricopeptide repeat-containing protein At4g16390, chloroplastic", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8f660178bb65d092cfb5d3487ab4e9a6dc3f8e44756ce3d0b08b104c8a25828d", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSFHHLCSSPSSLLHDPLPLCNLLSVYPKSTPRSFLSSYNPNSSHFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIPEPTASKSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGWFLTTSVAAKAWLESRRSAGGVSA", "sequence_length": 702, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8f660178bb65d092cfb5d3487ab4e9a6dc3f8e44756ce3d0b08b104c8a25828d", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8GWE0.json", "taxon_id": "3702", "uniprot_accession": "Q8GWE0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chloroplast-mrna-processing-go0010239.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chloroplast-mrna-processing-go0010239.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/ppr.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51375", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/ppr.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/pentatricopeptide-repeat-ipr002885.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002885", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/pentatricopeptide-repeat-ipr002885.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/ncbifam/pentatricopeptide-repeat-protein-tigr00756.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00756", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/ncbifam/pentatricopeptide-repeat-protein-tigr00756.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF13812" ], "protein_name": "Pentatricopeptide repeat-containing protein At5g42310, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLLQQPPLVSTRFHSLYFLTHHHHHHHRFFQPPISAFSATTSASLPSPSPSSSSSYFSSWNGLDTNEEEDNEFSSEVHRRYDFSPLLKFLSRFGPVELALDSESESEASPESLNPVEFDLVESYRAVPAPYWHSLIKSLTSSTSSLGLAYAVVSWLQKHNLCFSYELLYSILIHALGRSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSALRYMKQTLRAS", "sequence_length": 709, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f586523cdc59633df36ae95287cefb54ac7a2c2da82b078e9c3e3988bc716835", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8L844.json", "taxon_id": "3702", "uniprot_accession": "Q8L844", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mitochondrial-15s-rrna-processing-factor-ccm1-like-tpr-repeats-ipr057027.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mitochondrial-15s-rrna-processing-factor-ccm1-like-tpr-repeats-ipr057027.yaml" } ], "pfam_ids": [ "PF01535", "PF23276" ], "protein_name": "Small ribosomal subunit protein mS81 (rPPR8)", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRYQQWRLMLLRSYHRSHLPYLSPCSQVTSISSRSFSSFIHPGIGALQQSEQLCPLRSPMTSSGNLVKSVGRSFSSEPAVEEKSSAEATVIDIFSRLSGEDEIRKELESSGVVISQDLALKVLRKLESNPDVAKSFFQWIKEASPEELSSKNYNMMLRILGGNGLVDEFWGLVDVMKKKGHGLSANVRDKVGDKFQKDGLESDLLRLRKLFTSDCLDNSAENVCDRVCKIVMKEEWGDDVEKRVRDLNVEFKSDLVKMIVERLDVEPRKALLFFRWIDESDLFKHDEKTYNAMARVLGKEKFLDRFQNIVVEMRSAGYEVEIETYVRVSTRFCQTKLIKEAVDLFEIAMAGSSSSNNPTPHCFCLLLKKIVTAKILDMDLFSRAVKVYTKNGNALTDSLLKSVLKSLRSVDRVEQSNELLKEMKRGGYVPSGDMQSMIASSLSRKGKKDEADEFVDFMESSGNNLDDKAMASLVEGYCDSGNLDEALVCFEKMVGNTGVSYADYSFEKLVLAYCNKNQVRDAYKLLSAQVTKNQLKPRHSTYKSLVTNLLTKKIARDGGFEEALSLLPIMKDHGFPPFIDPFMSYFSSTGKSTEALGFLKAMTSNNFPYISVVLRVFETMMKSARHSEAQDLLSLCPNYIRNNPDVLELFNTMKPNESAVEKPLAASA", "sequence_length": 668, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "738c443693db58300a38b4f01a7fd0ac26630a6cd680f343f5c5ada375610087", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LPF1.json", "taxon_id": "3702", "uniprot_accession": "Q8LPF1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chloroplast-mrna-processing-go0010239.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chloroplast-mrna-processing-go0010239.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF13812" ], "protein_name": "Pentatricopeptide repeat-containing protein At2g41720", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATVTNFKLVTPPESSRADKPGATKASDAFQEKKSVSVNYDRGEHEVSVNIGGLRKADIPRRYRIRVENDRFQKDWSVSEVVDRLMALNRWEEVDGVLNSWVGRFARKNFPVLIRELSRRGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIEFEPLIRQKLESLRNKGEGLIPTFRHEGTLL", "sequence_length": 822, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "527a14b4fc1316d58fc4ceecef555289838b06a77f73e2dce83e82dcbd76dc14", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8RWS8.json", "taxon_id": "3702", "uniprot_accession": "Q8RWS8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/at1g68980-like-tpr-repeats-ipr057440.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057440", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/at1g68980-like-tpr-repeats-ipr057440.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-at1g68980-pf25245.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25245", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-at1g68980-pf25245.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF25245" ], "protein_name": "Pentatricopeptide repeat-containing protein At1g68980, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRKTLTLISLRRPFSSIPSKTLTPHQKSSFESTLHHSLITHDTDQAWKVFRSFAAASSLPDKRLLNSLITHLSSFHNTDQNTSLRHRLKRAFVSTTYVIEKDPILLEFETVRTVLESMKLAKASGPALALVECMFKNRYFVPFDLWGDLLIDVCRENGSLAAFLKVFRESCRIAVDEKLDFMKPDLVASNAALEACCRQMESLADAENLIESMDVLGVKPDELSFGFLAYLYARKGLREKISELEDLMDGLGFASRRILYSSMISGYVKSGDLDSASDVILCSLKGVGEASSFSEETYCELVRGFIESKSVESLAKLIIEAQKLESMSTDVGGSVGFGIVNACVKLGFSGKSILDELNAQGGSGGIGVYVPILKAYCKEGRTSEATQLVTEISSSGLQLDVETYNTMIEASMTKHDFLSALTLFRDMRETRVADLKRCYLTIMTGLLENQRPELMAEFVEEVMEDPRVEVKSHDWNSIIHAFCKSGRLGDAKSTFRRMTFLQYEPNNQTYLSLINGYVSCEKYFEVVVIWKEFKDKKAKLEHALADAFLNALVKGGFFGTALQVIEKCQEMKIFVDKWRYKATFMETQKNLRLPKLRKRKMKKIEFLDAFKNWARITT", "sequence_length": 619, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "396ac207833db853a9040bd77a55c04741297ead241669929d9e42e8c9a44639", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CAA5.json", "taxon_id": "3702", "uniprot_accession": "Q9CAA5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mitochondrial-15s-rrna-processing-factor-ccm1-like-tpr-repeats-ipr057027.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mitochondrial-15s-rrna-processing-factor-ccm1-like-tpr-repeats-ipr057027.yaml" } ], "pfam_ids": [ "PF01535", "PF13812", "PF23276" ], "protein_name": "Putative pentatricopeptide repeat-containing protein At5g36300", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPISHTRISLSMYNSWIRYFCRTGETNEAMSLLAEIHSLGSRPDPLSYVSFIETLASLRRTLEADALFHEVVRFMIYGSYSVRLYNALVSRYLRKEVSWRVVNEMKKRKFRLNSFVYGKIIRIYRDNGMWKKALGIVEEIREIGLPMDVEIYNSVIDTFGKYGELDEELQVLEKLQRSSDSRPNIRTWNSLIRWHCHHGAVDMALELFTMIFEDIGELVGKLKSQGVAPSANLFCTLANAYAQQGLCKQTVKVLKMMENEGIEPNLIMLNVLINAFGTAGKHMEALSIYHHIKETVWIHPDVVTYSTLMKAFTRAKKYEMVCSFYLVTL", "sequence_length": 330, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2e084891bcbe3c9f53f1bea959ddae5f4aeb5868c1880eaeed3437073af2bab9", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FFZ2.json", "taxon_id": "3702", "uniprot_accession": "Q9FFZ2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/e2-motif-ipr046849.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/e2-motif-ipr046849.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF14432", "PF20430", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At5g66520", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNVISCSFSLEHNLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW", "sequence_length": 620, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "181d13143d056658a3714f89402dcefe87b4134f0fe5c2c5f62d8179fc90525a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FJY7.json", "taxon_id": "3702", "uniprot_accession": "Q9FJY7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/ppr.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51375", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/ppr.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/pentatricopeptide-repeat-ipr002885.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002885", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/pentatricopeptide-repeat-ipr002885.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/ncbifam/pentatricopeptide-repeat-protein-tigr00756.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00756", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/ncbifam/pentatricopeptide-repeat-protein-tigr00756.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9FME4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01535", "PF13041", "PF13812" ], "protein_name": "Small ribosomal subunit protein mL104 (rPPR9)", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7870fa6153439d45b607a05a2b9c5186069180a3fa10d379b464ac1135b95a03", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPPSLPSLQLRRLLLRSFISSSSVNTLQSQPRIISSKPLFSPLPPSRSSIFSTFPSRFFSSETNAESESLDSNEIALSFSKELTGNPDAESQTISQRFNLSFSHITPNPDLILQTLNLSPEAGRAALGFNEWLDSNSNFSHTDETVSFFVDYFGRRKDFKGMLEIISKYKGIAGGKTLESAIDRLVRAGRPKQVTDFFEKMENDYGLKRDKESLTLVVKKLCEKGHASIAEKMVKNTANEIFPDENICDLLISGWCIAEKLDEATRLAGEMSRGGFEIGTKAYNMMLDCVCKLCRKKDPFKLQPEVEKVLLEMEFRGVPRNTETFNVLINNLCKIRRTEEAMTLFGRMGEWGCQPDAETYLVLIRSLYQAARIGEGDEMIDKMKSAGYGELLNKKEYYGFLKILCGIERLEHAMSVFKSMKANGCKPGIKTYDLLMGKMCANNQLTRANGLYKEAAKKGIAVSPKEYRVDPRFMKKKTKEVDSNVKKRETLPEKTARKKKRLKQINMSFVKKPHNKMRRRM", "sequence_length": 521, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7870fa6153439d45b607a05a2b9c5186069180a3fa10d379b464ac1135b95a03", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FME4.json", "taxon_id": "3702", "uniprot_accession": "Q9FME4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/e-motif-ipr046848.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046848", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/e-motif-ipr046848.yaml" } ], "pfam_ids": [ "PF01535", "PF12854", "PF13041", "PF20431" ], "protein_name": "Putative pentatricopeptide repeat-containing protein At1g56570", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSITKLARSNAFKPIPNFVRSSLRNAGVESSQNTEYPPYKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKKEAGMSWILVENQVFSFAVSDKMCPNASSVYSVLGLLIEETREAGYVPELDSLVNDQEVGT", "sequence_length": 611, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "40fcde15adf336532e03036bd0e9bd7019de40e27d064fe75cd38749688fbc13", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FXA9.json", "taxon_id": "3702", "uniprot_accession": "Q9FXA9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/dyw-domain-ipr032867.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dyw-domain-ipr032867.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF14432" ], "protein_name": "Pentatricopeptide repeat-containing protein At1g19720", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKLFVPSFPKTFLNYQTPAKVENSPELHPKSRKKNLSFTKKKEPNIIPDEQFDYLCRNGSLLEAEKALDSLFQQGSKVKRSTYLKLLESCIDSGSIHLGRILHARFGLFTEPDVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVLHGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVFYSIANDYHIIPALEHCSAMVYLYGRANRLEEALQFIQEMNIQSETPIWESFLTGCRIHGDIDMAIHAAENLFSLEPENTATESIVSQIYALGAKLGRSLEGNKPRRDNLLKKPLGQSWIEVRNLIHTFTTGDQSKLCTDVLYPLVEKMSRLDNRSDQYNGELWIEEEGREETCGIHSEKFAMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTRCLHHFKNGDCSCKDYW", "sequence_length": 894, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e56364c98aee0b7c00a1fb29266d4f1a854a7909c23fb3b4b1fd2cbc26662433", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FXH1.json", "taxon_id": "3702", "uniprot_accession": "Q9FXH1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chloroplast-rna-modification-go1900865.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1900865", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chloroplast-rna-modification-go1900865.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/e-motif-ipr046848.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046848", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/e-motif-ipr046848.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At3g22150, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGSALPLPPPPPLSLQSPSQNQTRHSSTFSPPTLTPQTPSIRSRLSKICQDGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRDQEHPHSSEIYDVIDGLAKDMRGDSFLTTLPTVTPSLELDE", "sequence_length": 820, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d0b640c67fc599501f48f6b7bc01877c2e1a17504a521f5793db51d527fe6e5c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LIE7.json", "taxon_id": "3702", "uniprot_accession": "Q9LIE7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/ppr-1-pf12854.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12854", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/ppr-1-pf12854.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/tetratricopeptide-repeat-domain-1-25-40-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.25.40.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tetratricopeptide-repeat-domain-1-25-40-10.yaml" } ], "pfam_ids": [ "PF01535", "PF12854", "PF13041", "PF14432", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At1g08070, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMLSCSPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW", "sequence_length": 741, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9cf8a3efdc81cfb26fa82fe7681b070d59f6c37824ec12023c88cb2c38609c8b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LN01.json", "taxon_id": "3702", "uniprot_accession": "Q9LN01", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/ncbifam/pentatricopeptide-repeat-protein-tigr00756.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00756", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/ncbifam/pentatricopeptide-repeat-protein-tigr00756.yaml" } ], "pfam_ids": [ "PF01535", "PF13041" ], "protein_name": "Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRGFASSASRIATAAAASKSLNASTSVNPKLSKTLNSSGKPTNPLNQRYISQVIERKDWFLILNQEFTTHRIGLNTRFVISVLQNQDNPLHSLRFYLWVSNFDPVYAKDQSLKSVLGNALFRKGPLLLSMELLKEIRDSGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDSYTKRLVEELDLRKSGLSRETVSAS", "sequence_length": 659, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87cf5494d79a4faccb5ee878df05714db83f6ccd324f28485609702723abebaa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LSQ2.json", "taxon_id": "3702", "uniprot_accession": "Q9LSQ2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/dyw-domain-ipr032867.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dyw-domain-ipr032867.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/eplus-motif-pf20430.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20430", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/eplus-motif-pf20430.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/e-motif-ipr046848.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046848", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/e-motif-ipr046848.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/e2-motif-ipr046849.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/e2-motif-ipr046849.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/tetratricopeptide-repeat-domain-1-25-40-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.25.40.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tetratricopeptide-repeat-domain-1-25-40-10.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF14432", "PF20430", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At3g22690", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAMLGNVLHLSPMVLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW", "sequence_length": 842, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6927ed965b71461648967a61b1b0209531e8da1721e6c28f7f6715301473b521", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LUJ2.json", "taxon_id": "3702", "uniprot_accession": "Q9LUJ2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/e2-motif-ipr046849.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/e2-motif-ipr046849.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF14432", "PF20430", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At5g13270, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTILTVQSSFSSSRVPVIKNANFDQIPSWVSLKSSTSSPSVKISHKQGQVENLHLVSLSKHRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPSVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEIYEKLKEFDGFMEGDMFQCNMTERREQLLDHSERLAIAFGLISVHGNAPAPIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW", "sequence_length": 752, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0b3ec2e128cceab6efa881e025932ca131730e161c9dc7fb5f56c865d25349a3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LYU9.json", "taxon_id": "3702", "uniprot_accession": "Q9LYU9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/e2-motif-ipr046849.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/e2-motif-ipr046849.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF14432", "PF20430", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At3g63370, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEYAVTNMRLLSNMMYSASAISFPRVRLHCSIPTEPSCRRNPFRQSNQPVQVPSPKLACFDGVLTEAFQRLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW", "sequence_length": 960, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7907a5c8891b4061930e2640d39e1f86d45b01b9c223d9f8a98e2e3ab6c76a59", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M1V3.json", "taxon_id": "3702", "uniprot_accession": "Q9M1V3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/ppr-1-pf12854.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12854", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/ppr-1-pf12854.yaml" } ], "pfam_ids": [ "PF01535", "PF12854", "PF13041", "PF13812" ], "protein_name": "Pentatricopeptide repeat-containing protein At3g49240, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSISKAAFLNHLQTLSRSYRHRVLPQPFLAVRYMSFATQEEAAAERRRRKRRLRMEPPVNSFNRSQQQQSQIPRPIQNPNIPKLPESVSALVGKRLDLHNHILKLIRENDLEEAALYTRHSVYSNCRPTIFTVNTVLAAQLRQAKYGALLQLHGFINQAGIAPNIITYNLIFQAYLDVRKPEIALEHYKLFIDNAPLNPSIATFRILVKGLVSNDNLEKAMEIKEDMAVKGFVVDPVVYSYLMMGCVKNSDADGVLKLYQELKEKLGGFVDDGVVYGQLMKGYFMKEMEKEAMECYEEAVGENSKVRMSAMAYNYVLEALSENGKFDEALKLFDAVKKEHNPPRHLAVNLGTFNVMVNGYCAGGKFEEAMEVFRQMGDFKCSPDTLSFNNLMNQLCDNELLAEAEKLYGEMEEKNVKPDEYTYGLLMDTCFKEGKIDEGAAYYKTMVESNLRPNLAVYNRLQDQLIKAGKLDDAKSFFDMMVSKLKMDDEAYKFIMRALSEAGRLDEMLKIVDEMLDDDTVRVSEELQEFVKEELRKGGREGDLEKLMEEKERLKAEAKAKELADAEEKKKAQSINIAALIPPKAVEEKKETAKLLWENEAGGVEEADVVEMAKGVEAGGSNGQDPPSC", "sequence_length": 629, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0e97d9c41236e6d22ff371570059eb0bc08600cde19cc486f3435fa2dee8d43b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M3A8.json", "taxon_id": "3702", "uniprot_accession": "Q9M3A8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/dyw-domain-ipr032867.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dyw-domain-ipr032867.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dyw-deaminase-pf14432.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14432", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dyw-deaminase-pf14432.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/e-motif-pf20431.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/e-motif-pf20431.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/ppr-2-pf13041.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13041", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/ppr-2-pf13041.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/ppr-pf01535.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01535", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/ppr-pf01535.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF14432", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At1g15510, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASSAQSPHFYLNPGKSNSFQSKAYKQRNVNFYWNFGIRRLFLRKSQGLSVLSSSSSSTHFSNSQLHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDAEHFHHFKDGECSCGD", "sequence_length": 866, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "01e64b64af06b6b4b56f3dfc45f6428d9b69d6247fc6c8d68ef002e77e73634c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M9E2.json", "taxon_id": "3702", "uniprot_accession": "Q9M9E2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-mitochondrial-mrna-stability-go0044528.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044528", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-mitochondrial-mrna-stability-go0044528.yaml" } ], "pfam_ids": [ "PF01535", "PF12854", "PF13041" ], "protein_name": "Pentatricopeptide repeat-containing protein At1g06710, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKTVVRCLLSRSHHPLIHFSTNLSLLHRVFTCSRYLTARFMSTPPPDDMFGFDDPFSPSDSREVVDLTKEYSFLHDSLVDYGNVNVHQVVPIITQSSIDARAIADAVSGVDDVFGRKSQKFLRQFREKLSESLVIEVLRLIARPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHMVCPL", "sequence_length": 987, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "763d111d846127e6aa528aebd28b90153581ef4b4f3d224d93f90748c144024c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M9X9.json", "taxon_id": "3702", "uniprot_accession": "Q9M9X9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-24-pf23276.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23276", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-24-pf23276.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF13812", "PF23276" ], "protein_name": "Pentatricopeptide repeat-containing protein At1g74850, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLAIPNPNSHHLSFLIQNSSFIGNRRFADGNRLRFLSGGNRKPCSFSGKIKAKTKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSVWLNDINDMLLKGDLPQLAVVVSVRGQLEKSSAARESPIAKAAFSFLQDHVSSSFSFTGWNGGRIMCQRSQLKQLLSTKEPTSEESENKNLVALANSPIFAAGTRASTSSDTNHSGNPTQRRTRTKKELAGSTA", "sequence_length": 862, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bf4f61e2a830ca241d318e309aa0f147e99bae0b9be2434b365404fb1d7bc2c0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9S7Q2.json", "taxon_id": "3702", "uniprot_accession": "Q9S7Q2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/at1g68980-like-tpr-repeats-ipr057440.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057440", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/at1g68980-like-tpr-repeats-ipr057440.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-at1g68980-pf25245.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25245", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-at1g68980-pf25245.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF13812", "PF25245" ], "protein_name": "Pentatricopeptide repeat-containing protein At1g03100, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFSLRKTKLQPVSLHQCRLSSLFRGVLIHAIEVTGTQSQASLQHGLAGKAVLSNAKYLSVLTRFRTSTRFDVWSIHRREAISSISGSILLQARDPAKLNEEIQIAVDEHRCDEAWRLFEQHMQMEGFPRKSVVNNVVVCFAESLDSNWLQKGYSLVEQAYEEGKQNLLEKEPLLYLSLALAKSGMAVPASTILRKLVETEEYPHVSAWSAVLAHMSLAGSGSYLSAELVLEIGYLFHNNRVDPRKKSNAPLLAMKPNTQVLNVALAGCLLFGTTRKAEQLLDMIPKIGVKADANLLVIMAHIYERNGRREELRKLQRHIDEACNLNESQFWQFYNCLLMCHLKFGDLESASKMVLEMLRRGKVARNSLGAAILEFDTADDGRLYTKRVSGKGSEVKEHDNPETRVVSIHSMIPYDEFSRDRKFLKLEAEAKDVLGALLAKLHVQVELITSERGVLQPTEEIYVKLAKAFLESGKMKELAKFLLKAEHEDSPVSSDNSMLINVINACISLGMLDQAHDLLDEMRMAGVRTGSSVYSSLLKAYCNTNQTREVTSLLRDAQKAGIQLDSSCYEALIQSQVIQNDTHGALNVFKEMKEAKILRGGNQKFEKLLKGCEGNAEAGLMSKLLREIREVQSLDAGVHDWNNVIHFFSKKGLMQDAEKALKRMRSLGHSPNAQTFHSMVTGYAAIGSKYTEVTELWGEMKSIAAATSSMKFDQELLDAVLYTFVRGGFFSRANEVVEMMEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQLKKREAGLVFKKWLGLS", "sequence_length": 793, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "428f007e2f63b542c0758d7020416a5326bc35517cb7bc6ed4f35229e445e743", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SA60.json", "taxon_id": "3702", "uniprot_accession": "Q9SA60", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/tetratricopeptide-repeat-domain-1-25-40-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.25.40.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tetratricopeptide-repeat-domain-1-25-40-10.yaml" } ], "pfam_ids": [ "PF01535", "PF12854", "PF13041", "PF14432", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At2g03880, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSVMSKIKLFRPVVTLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW", "sequence_length": 630, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b2d1158706c20d2df94c6ff8ae826ebf4d4a811985e454da631a24aa5c098b2d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SI53.json", "taxon_id": "3702", "uniprot_accession": "Q9SI53", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chloroplast-rna-modification-go1900865.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1900865", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chloroplast-rna-modification-go1900865.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/dyw-domain-ipr032867.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dyw-domain-ipr032867.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/e-motif-ipr046848.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046848", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/e-motif-ipr046848.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/e-motif-pf20431.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/e-motif-pf20431.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/ppr-2-pf13041.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13041", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/ppr-2-pf13041.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/tetratricopeptide-repeat-domain-1-25-40-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.25.40.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tetratricopeptide-repeat-domain-1-25-40-10.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF14432", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein DOT4, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAMLVTNLSSSSFCFFSSPHLQNQKEIRSGVRVRKYVIFNRASLRTVSDCVDSITTFDRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW", "sequence_length": 871, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "797539561f96914e6822c0bcd5b0dfc0eb00a3bcaff8f3fed280fe9eec4575c2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SN39.json", "taxon_id": "3702", "uniprot_accession": "Q9SN39", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/translation-activator-activity-go0008494.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008494", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/translation-activator-activity-go0008494.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/plastid-translation-go0032544.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032544", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/plastid-translation-go0032544.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/prop1-like-ppr-domain-ipr033443.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033443", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/prop1-like-ppr-domain-ipr033443.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/ppr.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51375", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/ppr.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/pentatricopeptide-repeat-ipr002885.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002885", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/pentatricopeptide-repeat-ipr002885.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/ncbifam/pentatricopeptide-repeat-protein-tigr00756.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00756", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/ncbifam/pentatricopeptide-repeat-protein-tigr00756.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9SNB7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01535", "PF13812", "PF17177" ], "protein_name": "Protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "90e79cd2bb5ee423fd5997d253db6da6ddc987bddd8395d8f920b75b3683f8ac", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQALSILPLKSGLLVGSRLEFELDCSCFVVSPKTTRKRLCFLEQACFGSSSSISSFIFVSSNRKVLFLCEPKRSLLGSSFGVGWATEQRELELGEEEVSTEDLSSANGGEKNNLRVDVRELAFSLRAAKTADDVDAVLKDKGELPLQVFCAMIKGFGKDKRLKPAVAVVDWLKRKKSESGGVIGPNLFIYNSLLGAMRGFGEAEKILKDMEEEGIVPNIVTYNTLMVIYMEEGEFLKALGILDLTKEKGFEPNPITYSTALLVYRRMEDGMGALEFFVELREKYAKREIGNDVGYDWEFEFVKLENFIGRICYQVMRRWLVKDDNWTTRVLKLLNAMDSAGVRPSREEHERLIWACTREEHYIVGKELYKRIRERFSEISLSVCNHLIWLMGKAKKWWAALEIYEDLLDEGPEPNNLSYELVVSHFNILLSAASKRGIWRWGVRLLNKMEDKGLKPQRRHWNAVLVACSKASETTAAIQIFKAMVDNGEKPTVISYGALLSALEKGKLYDEAFRVWNHMIKVGIEPNLYAYTTMASVLTGQQKFNLLDTLLKEMASKGIEPSVVTFNAVISGCARNGLSGVAYEWFHRMKSENVEPNEITYEMLIEALANDAKPRLAYELHVKAQNEGLKLSSKPYDAVVKSAETYGATIDLNLLGPRPDKKNRP", "sequence_length": 665, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "90e79cd2bb5ee423fd5997d253db6da6ddc987bddd8395d8f920b75b3683f8ac", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SNB7.json", "taxon_id": "3702", "uniprot_accession": "Q9SNB7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/polycistronic-mrna-processing-go0031426.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031426", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/polycistronic-mrna-processing-go0031426.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF14432", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein CRR2, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFLSHPPQVIQPTYHTVNFLPRSPLKPPSCSVALNNPSISSGAGAKISNNQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW", "sequence_length": 657, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "01817c9f568fc802c60c6b380ce09cadb9b163ccebf4c669eb9e783770113476", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9STF3.json", "taxon_id": "3702", "uniprot_accession": "Q9STF3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mitochondrial-mrna-5-end-processing-go0090617.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090617", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitochondrial-mrna-5-end-processing-go0090617.yaml" } ], "pfam_ids": [ "PF01535", "PF12854", "PF13041" ], "protein_name": "Pentatricopeptide repeat-containing protein At4g28010", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRFWTSAAAAEILRRDEHVVRKLLNPRVYSKLVNAFSETETKLRSLCEDSNPQLKNAVSVFQQAVDSGSSLAFAGNNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMCNSSANMDLAKRLLRVTDDKEERDK", "sequence_length": 704, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5c600c331f9bbdff85df5c6a6aea2d3ae636d94b1e707d027d890b65a581f960", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SUD8.json", "taxon_id": "3702", "uniprot_accession": "Q9SUD8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/dyw-domain-ipr032867.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dyw-domain-ipr032867.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/eplus-motif-pf20430.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20430", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/eplus-motif-pf20430.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/e2-motif-ipr046849.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/e2-motif-ipr046849.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF14432", "PF20430", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At4g30700", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLRTVSSATAETTAALISKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW", "sequence_length": 792, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6b4aa8ff111baeb11b5116359bfb1f946fb6ce8bf50e47b4222c5e9cc9bd9fba", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SUH6.json", "taxon_id": "3702", "uniprot_accession": "Q9SUH6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/tetratricopeptide-repeat-domain-1-25-40-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.25.40.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tetratricopeptide-repeat-domain-1-25-40-10.yaml" } ], "pfam_ids": [ "PF01535", "PF12854", "PF13041", "PF14432", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At4g02750", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEINKFRALSRRAQQLHYTSLNGLKRRCNNAHGAANFHSLKRATQTQIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW", "sequence_length": 781, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "386e1742ec4a6726efe3cdfbe09647f3fe6e7090fccdc540167f88399d5bfe1d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SY02.json", "taxon_id": "3702", "uniprot_accession": "Q9SY02", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/ppr-1-pf12854.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12854", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/ppr-1-pf12854.yaml" } ], "pfam_ids": [ "PF01535", "PF12854" ], "protein_name": "Pentatricopeptide repeat-containing protein At1g10270", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLSHLLRRLCTTTTTTRSPLSISFLHQRIHNISLSPANEDPETTTGNNQDSEKYPNLNPIPNDPSQFQIPQNHTPPIPYPPIPHRTMAFSSAEEAAAERRRRKRRLRIEPPLHALRRDPSAPPPKRDPNAPRLPDSTSALVGQRLNLHNRVQSLIRASDLDAASKLARQSVFSNTRPTVFTCNAIIAAMYRAKRYSESISLFQYFFKQSNIVPNVVSYNQIINAHCDEGNVDEALEVYRHILANAPFAPSSVTYRHLTKGLVQAGRIGDAASLLREMLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFFDELKSKCTVYDGIVNATFMEYWFEKGNDKEAMESYRSLLDKKFRMHPPTGNVLLEVFLKFGKKDEAWALFNEMLDNHAPPNILSVNSDTVGIMVNECFKMGEFSEAINTFKKVGSKVTSKPFVMDYLGYCNIVTRFCEQGMLTEAERFFAEGVSRSLPADAPSHRAMIDAYLKAERIDDAVKMLDRMVDVNLRVVADFGARVFGELIKNGKLTESAEVLTKMGEREPKPDPSIYDVVVRGLCDGDALDQAKDIVGEMIRHNVGVTTVLREFIIEVFEKAGRREEIEKILNSVARPVRNAGQSGNTPPRVPAVFGTTPAAPQQPRDRAPWTSQGVVHSNSGWANGTAGQTAGGAYKANNGQNPSWSNTSDNQQQQSWSNQTAGQQPPSWSRQAPGYQQQQSWSQQSGWSSPSGHQQSWTNQTAGQQQPWANQTPGQQQQWANQTPGQQQQLANQTPGQQQQWANQTPGQQQQWANQNNGHQQPWANQNTGHQQSWANQTPSQQQPWANQTTGQQQGWGNQTTGQQQQWANQTAGQQSGWTAQQQWSNQTASHQQSQWLNPVPGEVANQTPWSNSVDSHLPQQQEPGPSHECQETQEKKVVELRN", "sequence_length": 913, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7e2c3716932cdd6aaaa7bb544404f9f5ba2c0436cdef2fcec7326d6dee2d8715", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SY69.json", "taxon_id": "3702", "uniprot_accession": "Q9SY69", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chloroplast-mrna-processing-go0010239.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chloroplast-mrna-processing-go0010239.yaml" } ], "pfam_ids": [ "PF01535", "PF03161" ], "protein_name": "Pentatricopeptide repeat-containing protein At2g15820, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKSNGHNATMIVTGACDFSSSFSLASSSSSTVSVTTFNISSLSSNPNIINSSSTLFRSLSFSLIRHRSSYSRRSLRRLSIHTVHGNKTQFFSHSSTRTPPLFTANSTAQRSGTFVEHLTGITESEEGISEANGFGDVESARNDIRNVATRRIETEFEVRELEELPEEWRRSKLAWLCKEVPTHKAVTLVRLLNAQKKWVRQEDATYISVHCMRIRENETGFRVYRWMTQQNWYRFDFGLTTKLAEYLGKERKFTKCREVFDDVLNQGRVPSESTFHILVVAYLSSLSVEGCLEEACSVYNRMIQLGGYKPRLSLHNSLFRALVSKQGGILNDQLKQAEFIFHNVVTTGLEVQKDIYSGLIWLHSCQDEVDIGRINSLREEMKKAGFQESKEVVVSLLRAYAKEGGVEEVERTWLELLDLDCGIPSQAFVYKIEAYSKVGDFAKAMEIFREMEKHIGGATMSGYHKIIEVLCKVQQVELVETLMKEFEESGKKPLLPSFIEIAKMYFDLGLHEKLEMAFVQCLEKCQPSQPIYNIYLDSLTKIGNLEKAGDVFNEMKNNGTINVSARSCNSLLKGYLDCGKQVQAERIYDLMRMKKYEIEPPLMEKLDYILSLKKKEVKKRPFSMKLSKDQREVLVGLLLGGLQIESDKEKKSHMIKFEFRENSQAHLVLKQNIHDQFREWLHPLSNFQEDIIPFEFYSVPHSYFGFYAEHYWPKGQPEIPKLIHRWLSPHSLAYWYMYSGVKTSSGDIILRLKGSLEGVEKVVKALQAKSMECRVKKKGKVFWIGLQGTNSALFWKLIEPHVLENLKEHLKPASESLDNVKEAEEQSINFKSNSDHSDDCVNSEAHFY", "sequence_length": 849, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "647de65c2e3f4f61bc004e72449336f26da481099e8e4d0792bee9e618baa318", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9XIL5.json", "taxon_id": "3702", "uniprot_accession": "Q9XIL5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/e-motif-ipr046848.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046848", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/e-motif-ipr046848.yaml" } ], "pfam_ids": [ "PF01535", "PF12854", "PF13041", "PF20431" ], "protein_name": "Pentatricopeptide repeat-containing protein At2g37320", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSCLRNYYCRAFGYKQSRSCYSRSLNREIANESSEVERRARSLRVLDIISSKSGGVSNRQDHFGFVQEFRQTDSWRFRGQAISEDFDLSRTKNGVSSVLEEVMLEDSSSSVKRDGWSFDAYGLSSAVRSCGLNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMAEHGLKPELNHYSCLVDLLGRFGLLQEALELIENMPMKPNSVIWGSLLFSCRVHGDVWTGIRAAEERLMLEPDCAATHVQLANLYASVGYWKEAATVRKLMKDKGLKTNPGCSWIEINNYVFMFKAEDGSNCRMLEIVHVLHCLIDHMEFL", "sequence_length": 500, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6bada01953ab68c68e10c0b237a7ef291fb2c8acdb45c560bc4d239dcba8b237", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZUT4.json", "taxon_id": "3702", "uniprot_accession": "Q9ZUT4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mitochondrial-15s-rrna-processing-factor-ccm1-like-tpr-repeats-ipr057027.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mitochondrial-15s-rrna-processing-factor-ccm1-like-tpr-repeats-ipr057027.yaml" } ], "pfam_ids": [ "PF01535", "PF13041", "PF13812", "PF23276" ], "protein_name": "Large ribosomal subunit protein mL102 (rPPR5)", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFISRSKRYQSKARVYLSLPRSSNSSLFSLPRLFSTIEETQTPANANPETQSPDAKSETKKNLTSTETRPLRERFQRGKRQNHEKLEDTICRMMDNRAWTTRLQNSIRDLVPEWDHSLVYNVLHGAKKLEHALQFFRWTERSGLIRHDRDTHMKMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPKDNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLLDTLIEKEIILRHQDTLEMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDALNNLIRGHAKEGNPDSSYEILKIMSRRGVPRESNAYELLIKSYMSKGEPGDAKTALDSMVEDGHVPDSSLFRSVIESLFEDGRVQTASRVMMIMIDKNVGIEDNMDLIAKILEALLMRGHVEEALGRIDLLNQNGHTADLDSLLSVLSEKGKTIAALKLLDFGLERDLSLEFSSYDKVLDALLGAGKTLNAYSVLCKIMEKGSSTDWKSSDELIKSLNQEGNTKQADVLSRMIKKGQGIKKQNNVSL", "sequence_length": 757, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5dab31aaa4da33beaa897bf6b12362a10ff91624c509100a5c886d947a59dfc5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZUU3.json", "taxon_id": "3702", "uniprot_accession": "Q9ZUU3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mitochondrial-mrna-5-end-processing-go0090617.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090617", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitochondrial-mrna-5-end-processing-go0090617.yaml" } ], "pfam_ids": [ "PF01535", "PF13041" ], "protein_name": "Pentatricopeptide repeat-containing protein At2g28050", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTPQCFLKTLKTAKQTYTFSIYKLLLNSSSINQTLASPETPLSDLNLSTLRRILSDPDIKSWKCISLFNFILENPSLFSFQPDLRTHLSLTFRVLSERRFSYAKELLKPVAIDDILRYPFNVIVSSVIDECGCEKKVVGRFFNSMIMVYSDNGKFSEVVEVFEYMKNNEVKIDEKTCTLHLLNLKRCDQMELARDFFSLMVESGIDVVTVYSLTVVVTVLCCNGEITRARELVEEMGLVKGVKANIVTFKSMIGCCVKRWDFEELDLVLKLMEKESVMLDLDSYKVLIDGFTSYGKVEEAERLVLMMHDKKLRVESYLYNLIMNGYSRFGLVEKVIELYSEMSSRGVTPNKDTYWVLMNGLCKAGKVCEAMSFLNELRVNEFEIDEEMYSTLSEECYRVGMIDKSLEVVAEMIRDGFIPGATICERLADSLFEVNRKEAQMLITIVVKCGIKPKSCSQYGLK", "sequence_length": 462, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dd47d1d8677296c0037a6a08d55b1afa3ed7a8a75bcfc3eb78c3625436977704", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZUU7.json", "taxon_id": "3702", "uniprot_accession": "Q9ZUU7", "uniprot_release": "2026_03" } ], "pfam_id": "PF01535", "short_name": "PPR", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 13, "discovery_scanned": true, "example_count": 13, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/shk-pf01549.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/shk-pf01549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-10-10-1940-1-10-10-1940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.10.1940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-10-10-1940-1-10-10-1940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/shtk-domain-like-1-10-10-1870.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.10.1870", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/shtk-domain-like-1-10-10-1870.yaml" } ], "pfam_ids": [ "PF01549" ], "protein_name": "Uncharacterized protein ZK643.6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRGIFFLILILNFIGLIFSVAEDCALSKREDRCGSIFEDLTNCYNSTFKMMLGDCLVTCNACESYTCNNPQPDTTLNCTALAGECNSALFSELMKEKCPATCGKCNRKNANLCSDKSKPDICVNLKTLCNSVEFYDKLSEQCPSTCNRCPHNGTNPENKTGGNGGTGTQECTDLANDCSYNQNRCSVKEYSSLMHRLCPKTCNACNICEDANKMCPIWVPRGFCSKFDHDKVQKSCAKSCNICK", "sequence_length": 244, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "caf671f1c07226b60dfb473dfb11c662d72d04be40bd872fca20d005fbc405ee", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P30652.json", "taxon_id": "6239", "uniprot_accession": "P30652", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/tyrosinase-activity-go0004503.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0004503", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/tyrosinase-activity-go0004503.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tyrosinase-copper-binding-domain-ipr002227.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002227", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tyrosinase-copper-binding-domain-ipr002227.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tyrosinase-pf00264.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tyrosinase-pf00264.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/di-copper-centre-containing-domain-superfamily-ipr008922.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008922", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/di-copper-centre-containing-domain-superfamily-ipr008922.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/di-copper-center-containing-domain-from-catechol-oxidase-1-10-1280-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.1280.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/di-copper-center-containing-domain-from-catechol-oxidase-1-10-1280-10.yaml" } ], "pfam_ids": [ "PF00264", "PF01549" ], "protein_name": "Putative tyrosinase-like protein tyr-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGRLRAFLLFSGTLAVISTVHADFNCSQAPDSDMVQTCHMLQEWDSAARKAIRKRQAFNAGAPGVQGFSPSNPPRFAPSAQGCMNIACICPYMGGRMANGCILPNGQPYLMAYRKEYRMMSDNERQRWHNALIQLKRSGEYDRLSVMHRQVGSASGAHSGPGFLVWHREYMKRMEIALRMIDPGISMPYWDSVLESYLPDPRDSIMFGPQFMGMTDASGQLVSGPFAGFRTLEGRPNIIRRMATEGKMFTEQNINNLMAQNDLVSVMAFTAPQGGCPFRPYFGALEYTHASIHLWMGGDMKPPSTSANDPVFFLHHTFVDFIWEMWRQNHQNRFARENQYPPDIAACANSQHFSYAQMRPWDKINRDGLSNAYTDNLYHYAPRPTCNRNNANCGSQYLFCDTRGNPHCVAKVKPGGLCRGFEGLDSCYMGTCVAGWCRGGQQFQQPAQTTAVATVQQPQQQPQQQQPQQQRPATTPQSNCYNEDPCCNQWSRQNECRTNTVYMNRYCRKSCGLCQSNDNNRGCHDRHISCAYWRGQNFCTRRRQWMAENCQATCGWCNMNEAQLCASVARQSRRVRRNAKFWLTEPDADDFVDDFMLDYGR", "sequence_length": 601, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7df7a17c9ecbf8786973857a113c50e15c0d88d563a8b00dd2e1128d8c895a9d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P34269.json", "taxon_id": "6239", "uniprot_accession": "P34269", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/shk-pf01549.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/shk-pf01549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P55113", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01400", "PF01549" ], "protein_name": "Zinc metalloproteinase nas-7", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "197a1327cab5096236e4b0acce5d30fb32139b18aa1b185f759bffa9d617f2ed", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLLPWIITIVTVIPATLGHRNRVQDDEMLVISDSTDSLNLEDFEFADKLTREELFGKHIPVEVVNDFKSDIRLPRRHKRNGVSRAAKLWPNARIPYAISPHYSPHERALLAKAVKQYHEKTCIRFVPRQTGEPDYLFIGKVDGCFSEVGRTSGVQVLSLDNGCMEYATIIHEMMHVVGFYHEHERWDRDNFIDIIWQNIDRGALDQFGKVDLSKTSYYGQPYDYKSILHYDSLAFSKNGFPTMLPKVKSATIGNARDFSDVDISKINRMYNCPVEKSVTAPFARARHVPIYSPQYHKYEDRPKIPLRSFDMQQGPINPPMAQIPSQSLVVSSSSGRVNYNSNKPSSQCEDRITVCWWTADRCRSPAIYQVMSSLCPKTCKFC", "sequence_length": 382, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "197a1327cab5096236e4b0acce5d30fb32139b18aa1b185f759bffa9d617f2ed", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P55113.json", "taxon_id": "6239", "uniprot_accession": "P55113", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/heme-binding-beta-barrel-domain-of-human-thap4-arabidopsis-thaliana-ni-cd07828.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd07828", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/heme-binding-beta-barrel-domain-of-human-thap4-arabidopsis-thaliana-ni-cd07828.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/thap4-like-heme-binding-domain-ipr014878.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR014878", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/thap4-like-heme-binding-domain-ipr014878.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/thap4-heme-bd-pf08768.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08768", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/thap4-heme-bd-pf08768.yaml" } ], "pfam_ids": [ "PF01549", "PF08768" ], "protein_name": "Uncharacterized protein C28H8.5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRLPRRLKIKRFHKPSCSSILPKYPGCPFSLNLSLSFLNFTHYDVHLQMINRFFPNVYYSVVIPIILLSTSYSAKIAPKCRDTDMNCAVWVATNTSDCENVELVNSHCPRTCQTCGEPIDPKYDVKLLPAKLKSIAWMVGRWRSEFGGKAFFPTIPKFTYGEQVDITIADNSQDTHTPLLNYTAFAWDINMPDGDPTEIHSENGYIAVEYDKEQEKEYVSLNTAMSNGFMTIEEGESGPNQVKFRLQRIGRISFSHDSAVRIMFREWTLLDENRLEARLLMTTTITRRLMEHTAVIYKKIYP", "sequence_length": 302, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb52c5a2b3d616e43d49fa494708167fb89b6ce313cf31b1c1ca1a1fbf49105d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q09244.json", "taxon_id": "6239", "uniprot_accession": "Q09244", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/shk-pf01549.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/shk-pf01549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-10-10-1940-1-10-10-1940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.10.1940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-10-10-1940-1-10-10-1940.yaml" } ], "pfam_ids": [ "PF01549" ], "protein_name": "Uncharacterized protein ZK673.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWSLKSTLCIALLVTYSVAQDSTTVDTTAATTATGGTTATGGTTATGGTTVSGATTAASGATTASTCADDPNTDCTQYTSLCSNAKYTPLLQQFCPKTCGFCGGGSTAAPVQCVDSSTNCANWEKNGFCSSTFYDCANKKQYCAKTCKLCTTTC", "sequence_length": 154, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87df91f4e05a078d3d4928e23e7f0a22dd77d118c1d870ebb4a5655b4a7d75c5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q09662.json", "taxon_id": "6239", "uniprot_accession": "Q09662", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/tyrosinase-activity-go0004503.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0004503", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/tyrosinase-activity-go0004503.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tyrosinase-pf00264.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tyrosinase-pf00264.yaml" } ], "pfam_ids": [ "PF00264", "PF01549" ], "protein_name": "Putative tyrosinase-like protein tyr-3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIRYIILLVYFLIFEVNSQLDCSKAPTPAIRIMCNQIQRWDQKARATPSLSGDVKTPGIAGKAMAAEFSPIASNVFQCMDIACLCVFFRGTGGNNCVVQGRPLGKVVRKEYRMLSDDERQRLHQAFRTLKQNGEYDRLARVHAQYSESGAAHSGPAFLPWHREFVKRMEFLIRQVDPSLHLPYWDSSLDQNLPDSKDSILWTNEFMGDANGEVNNGPFRSWKTVENKPAITRAVGAQGKGYSEDEINTMLGQTDIAQVLAFSAPQRGCPYQPNFNVPEYTHGNPHIYVGGDMLETSTAANDPIFWMHHSFVDLLWEMYRQSKQTRATRETAYPADNRQCSSEHHFRAAFMRPFTPMRNADGLSNMYTDNLYSYAPRPSCNAGPTCGSPYLFCDKSHGAPRCAVRMKPEGNCASFKNGEDACYQGSCQSGKCVAGSQNVTPPPTIQPTKPVVTVEVFSETCLKIRLKFFQTSCFNENECCGPWSAKGECQKNPVYMNVWCKASCRQCTPNYNINEECSDRHTNCAMWSRSGECNKNPLWMSENCRSSCQKCGRSRAATCGGGGGADSISNPTTMPPATNNGQQNTPCDSPMCYNEDQCCPIWAQRGQCRSNPGYMTCQCKVSCGVCRPNYVYGPCADYHYDCAAWARRGECLKNKWMPENCRRSCNTCVNQQQLAARCATRIVRSAFLELIRMK", "sequence_length": 693, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c41fbbe6e0ea7ec94c202de62507ef256fedda470fdb73086a392654122656af", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/Q19673.json", "taxon_id": "6239", "uniprot_accession": "Q19673", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/peroxinectin-like-animal-heme-peroxidases-peroxinectin-is-an-arthropod-cd09823.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/peroxinectin-like-animal-heme-peroxidases-peroxinectin-is-an-arthropod-cd09823.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/shk-pf01549.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/shk-pf01549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-10-10-1940-1-10-10-1940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.10.1940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-10-10-1940-1-10-10-1940.yaml" } ], "pfam_ids": [ "PF01549", "PF03098" ], "protein_name": "Peroxidase skpo-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSLLFSILLIYLIQLVRSEECTDKHIHCFFWSQEGECEVNPRWMKKHCQKACGTCSLTSPTPLTRQQDVPTARTFDDQQDRQFLPSRPSSIPEGCNSVMTVEAETRRIFSSGQLTARFRQQMCAEEQVAPDCSINQCFHKKYRSMDGTCNNLQNPVKGAAFTAFTRLMPAAYDDGFNTLVSASRRNRPNPREVSVFLLSSERSLPGHVNSLLMLFGQFVSHDITSNAAQNFCGCQNSGPMCASIFAPPSDRSRRCIPFTRSFPICGTGQFGRVREQLNMNTAAIDASLIYGSEAITARSLRFAAMLRTSMIGGRMFPPNTNPGSLTAGDGRAILFVGLAALHTSFLRLHNNVAARLQNMNRHWNADRIFQESRKIVGGIVQVITYQEFVPELIGDASKTILGAYNGYNPNVEIGVLNEFAAGAYRLHGMIQETYPLVNSQFQEVNRYRFIDGVNNINHVLNNIDAIYRGMMTVPVRSPQRLTTSVTERLFGGSVDMAAVNIQRGRDHGLRSYNDYRRFCNLRPITSFNDWPEVPDENVRQRIGQLYRTPDDLDFYVGGILEQPAAGSLLGATFACVIGKQFERLRDGDRFYYENPGVFTSPQLAELKRTTLSWVLCQTGDNMVRVGRRAFDIENGSRAVPCSSITGLNLEAWRE", "sequence_length": 655, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3fc9cf2d0342424ea539eae93585a9eb552536a8d3c5ddc590a27c89a641acd7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q20616.json", "taxon_id": "6239", "uniprot_accession": "Q20616", 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"MLSSKLFCVLFFCLGLSNGWPQFDFMNQMGFGGGFNNGPHPNSRPGSRPNSPLGDIFGNINGMVKGITDQIGKIAQGLDVNNDLGKMAHGPPPPQSEWVEHARRFCRRFPGHPKCRGQLPQFNDIGSMLNGILVDSGKWLPKVPFINIRDPLSGINSDLKNALNGIQVQFGQISQQFANNIRNICQQMNCKQQQQKNVQMKQAILKQTVDFEKKVFGNNVADKMNLRFDRTLQLKQALLEKAQLKGVVAPEDNGVFDKDLLLTETQANFMLNELGKGGEGAIPMPGSAKAKRASIFFEQNLIQKWPSTSPIPYTFDSSLDNLDQNDVRGAISEIEQKTCIRFKYFASPPKGNHINYQKVNSPSFCGLSYIGRVEPANPVYLSFQCGNGRGIAVHETMHALGVNHQHLRMDRDKHIKVDWSNINPQQYDAFVVADSKLYTTYGVKYAYDSIMHYNAYTGAVNIAKPTMIPLVNQQANIGLLGQRAKMSNADVEILNKMYCKSAGCDDKNVYCGAWALQDLCNNPNHNVWMRSNCRKSCNFC", "sequence_length": 540, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8d7ef4a4daaf31d1719b682a2a8ff11c1fd119d56cbf9045f5c60737a652c352", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q21388.json", "taxon_id": "6239", "uniprot_accession": "Q21388", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-10-10-1940-1-10-10-1940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.10.1940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-10-10-1940-1-10-10-1940.yaml" } ], "pfam_ids": [ "PF01400", "PF01549" ], "protein_name": "Zinc metalloproteinase nas-11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTPSLVFLIVVIVVVEGQGWRPWDRFNHPGNFGNWGGNNWGTRQRNQEPHDIPPPVPPPGFRGNNDRFGGNIIKVVEIIDLGKSKNRGDILSDFKDVHKKHRHLGRKEWKGKVKQFCHRFPGHPNCRRGKVPDQKELEEMIGQFSKGGIGRFLKRVPKIYIEDPLARVDPKLKGFLENAGRGFGHVSSEHVNKLRDICKRRKCREQPESAKKTRELFTQKLADFETKIAGKDKTDSVQLRFDRTLQIKEALLEKGNLTADIVPVDNGVYDLDTMLTEEQANILLNELNKAGVGDDEIPLPDADTDDEDDDDSTNSASGAAPGSSRLKKSALYFEGNLIKKWDPSSPIRYVLDSSLEDLDKNDVRAAIYEIEKNTCIRFKELSSPPTGSHIVYYKVDSPTFCGLSYVGRADPANPVYLSFGCDNNKGVAIHETMHALGVAHQHLRNDRDQFITINWSNIDPQQYDAFVVVDSKLYTSYGVKYAYDSIMHYNGYTAAQNIAIPTMNPKTNSAVNLKVLGQRQKMGTTDIELLKKMYCQPGCDDKNVYCGAWALKDLCKNPGHDQYMAANCKKSCGLCAIGK", "sequence_length": 579, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "97f868d3550dade1d6fc6db1321f0803d37ab3fe9b2b1cb5e510db3a5a60c9c6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q21432.json", "taxon_id": "6239", "uniprot_accession": "Q21432", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cuticle-development-involved-in-collagen-and-cuticulin-based-cuticle-molting-cyc-go0042338.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042338", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cuticle-development-involved-in-collagen-and-cuticulin-based-cuticle-molting-cyc-go0042338.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/peroxinectin-like-animal-heme-peroxidases-peroxinectin-is-an-arthropod-cd09823.yaml", "qualification_status": 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"ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/shk-pf01549.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/shk-pf01549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/shkt.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51670", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/shkt.yaml" } ], "pfam_ids": [ "PF01549", "PF03098" ], "protein_name": "Peroxidase mlt-7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRLHRNLSLLFLICILNEYRIESQTLSPPITDRFKCLTNGCCDHHEWCRFWASIGECNANKDWMTENCQLACGTCTAPAAPLLPVTTTASSFNGGGFVQTTTQSSGPTTTITIPPSSLTSVTSCERVKDSIAQASELMSISRLINPVEDNFGRNMLSIDDITRSVPTGCVPQLSDVGVDCRKSLCYHLMYRTLDGTCNNLEKPMQGAAFRRFNRHFPAQYDDGKGEPISSLNQSRPSAREANRVMLSSAQSVVHDKFNNMMMQWGQFMSHDMSKTTLQPSANCKTCDPVPSKCMPIPIGEKDPNLGFKSKQCLKVSRSAPICRVEPREQLNENTAYIDGSMIYGSSLKDLHKFRDGRTGFLRVTRFNNQNVLPFDQSKCANKDKCTASFTAGDIRANLFIGLSSLHIMFAREHNRIAQKLTELNPTWSGDRVFQEARKIVGAQIQNVLYKEYLPKLLGVSFDKVIGPYKGYDTNVDATIANEFTTSAFRFGHGMIEEFYKRVDLSGNNITHGGFFFGDGVFKSGKILFEGGVDPIIRGFMTTAVKRPHRMTPAITEKMFGSTDLGSLNIQRGRDHGIPSYNKMRQFCGLKSANTFDDFADMILDRNLRAGLARNYNTTNDVDFYVGSMLEDPVIGGLVGTTLSCAIGEQFKRARDGDRFYFENPGIFTRSQMEEIKKSSLSRIICDNADNFELVSQDAFLLPGSNLTPCSKIPKMDLSKWRAL", "sequence_length": 724, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8fae8c3b532209454c78fcd13c52679f0eedaa3793d62fa416cce3926c93a1fe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q23490.json", "taxon_id": "6239", "uniprot_accession": "Q23490", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/l-ascorbic-acid-binding-go0031418.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031418", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/l-ascorbic-acid-binding-go0031418.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/procollagen-proline-4-dioxygenase-activity-go0004656.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0004656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/procollagen-proline-4-dioxygenase-activity-go0004656.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/shkt-domain-ipr003582.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003582", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/shkt-domain-ipr003582.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/shk-pf01549.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/shk-pf01549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/shkt.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51670", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/shkt.yaml" } ], "pfam_ids": [ "PF01549", "PF13640" ], "protein_name": "Probable prolyl 4-hydroxylase 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARRGLLISFFAIFSVLLQSSTSLISSSSVFVNPSKVKQVSSKPRAFVYEGFLTELECDHMVSLAKASLKRSAVADNDSGESKFSEVRTSSGTFISKGKDPIVSGIEDKISTWTFLPKENGEDIQVLRYEHGQKYDAHFDYFHDKVNIVRGGHRMATILMYLSNVTKGGETVFPDAEIPSRRVLSENKEDLSDCAKRGIAVKPRKGDALLFFNLHPDAIPDPLSLHGGCPVIEGEKWSATKWIHVDSFDRIVTPSGNCTDMNESCERWAVLGECTKNPEYMVGTTELPGYCRRSCKAC", "sequence_length": 298, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "227728d0c72ab7f9adaba582685d0f6f3d0d1a0d4806dbff0c09fae3121748b8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LAN3.json", "taxon_id": "3702", "uniprot_accession": "Q8LAN3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/shk-pf01549.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/shk-pf01549.yaml" } ], "pfam_ids": [ "PF01400", "PF01549" ], "protein_name": "Zinc metalloproteinase nas-6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDHVLLLTYCLVSTVVRSQPSADVFRSFAGYIPEDHRVTHHEWQNSGKFQGDIDGVDPNLLKLPEGPVLFNALKNKQLTWEGGVIPYEMDTAFSPNEIKILEKAFDSYRRTTCIRFEKREGQTDYLNIVKGYGCYSQVGRTGGKQEISLGRGCFFHEIIVHELMHSVGFWHEHSRADRDDHIKINWDNILPGMKSQFDKISAVLQDLQGENYDYKSIMHYDSTAFSRNGRNTIETVENGFTQVIGTAMDLSPLDIVKINKLYSCKTKKKEKVKPATTEEPHQLIPQVVDKNSVDSGEKCVDHFADCPHFAQYCTRASFFFVMKSYCPFTCKHCPGDRKLKKSG", "sequence_length": 344, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "53bd14adb41dfda13a62a1c1e96c7d381084740017265c30bfe599623cde8321", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9U3S9.json", "taxon_id": "6239", "uniprot_accession": "Q9U3S9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/shk-pf01549.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/shk-pf01549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": 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"data/traits/sequence/domain/cdd/eukaryotic-members-of-the-multidrug-and-toxic-compound-extrusion-mate--cd13132.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13132", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/eukaryotic-members-of-the-multidrug-and-toxic-compound-extrusion-mate--cd13132.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mate-pf01554.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF01554", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mate-pf01554.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:F4JTB3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01554" ], "protein_name": "Protein DETOXIFICATION 35", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "bc1ee25aa731740104e66984e562f4c905fb54eac1fa08f3b2d6a27191bce14b", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDPTAPLLTHGGEVEEDYAPARSWTDVKRVLSTESAKLWMIAAPVGFNIICQYGVSSVTNIFVGHIGEVELSAVSISLSVIGTFSFGFLLGMGSALETLCGQAYGAGQVNMLGVYMQRSWIILFVSCFFLLPIYIFATPVLRLLGQAEEIAVPAGQFTLLTIPQLFSLAFNFPTSKFLQAQSKVVAIAWIGFVALSLHVIMLWLFIIEFGWGTNGAALAFNITNWGTAIAQIVYVIGWCNEGWTGLSWLAFKEIWAFVRLSIASAVMLCLEIWYMMSIIVLTGRLDNAVIAVDSLSICMNINGLEAMLFIGINAAISVRVSNELGLGRPRAAKYSVYVTVFQSLLIGLVFMVAIIIARDHFAIIFTSSKVLQRAVSKLAYLLGITMVLNSVQPVVSGVAVGGGWQGLVAYINLGCYYIFGLPFGYLLGYIANFGVMGLWSGMIAGTALQTLLLLIVLYKTNWNKEVEETMERMKKWGGSETTSKDILA", "sequence_length": 488, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "bc1ee25aa731740104e66984e562f4c905fb54eac1fa08f3b2d6a27191bce14b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4JTB3.json", "taxon_id": "3702", "uniprot_accession": "F4JTB3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-the-multidrug-and-toxic-compound-extrusio-cd13134.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13134", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-the-multidrug-and-toxic-compound-extrusio-cd13134.yaml" } ], "pfam_ids": [ "PF01554" ], "protein_name": "Uncharacterized transporter YisQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKQAVFKSTALKKPADKTFSLFSLTWPIFIEVSLYMFMGNADTLMLSQYSDNSVAAVGVSNQILNLIIVMFSFIATGTTVIISQFLGSRQKKEAMEVAYVSIGANFFISLAISAVVFFAAVPLLHMMGLSDALMPDAKVFLQVVGGLSFIQALIMTFSAILKSYGYTKDTMFVTIGMNILNIAGNFVVIFGLFGFPVLGVAGVAMSTSIARVIGLIAMIVIVNKRIQLKMSLKKVFHMHKEHLRKLLKIGIPSAGEQLSYNLSQMIVTYFIAIMGAQALTTKVYTQNITMFILLFGTAISQGTQILIGRYIGGKQFDAAYERCMKSLYWALGIAAATSVLMTIFSKDLIGLFTQSPDIIATASLLIAMTIILEPGRSFNVIIINSLRAAGDAKFPVYMAMISMWGIGLPLAYLFGIHLGFGLAGIWISFIADEWVRGILMYRRWRSRIWIQKGMA", "sequence_length": 455, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "38871b9cb4e0b53248776302389be6e35414e99b30177f1c0a1d31d20b0a7ecc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O07940.json", "taxon_id": "224308", "uniprot_accession": "O07940", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/subfamily-of-the-multidrug-and-toxic-compound-extrusion-mate-like-prot-cd13131.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13131", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/subfamily-of-the-multidrug-and-toxic-compound-extrusion-mate-like-prot-cd13131.yaml" } ], "pfam_ids": [ "PF01554" ], "protein_name": "Probable multidrug resistance protein NorM", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKETQNAREKIKQLLHILIPIFITQAGLSLITFLDTVMSGKVSPADLAGVAIGSSLWTPVYTGLAGILMAVTPIVAQLLGAEKKQKIPFTVLQAVYVAALLSIAVLVIGYAAVDLILGRLNLDIHVHQIAKHFLGFLSLGIFPLFVYTVLRSFIDSLGKTRVTMMITLSSLPINFVLNYVFIFGKFGMPALGGVGAGLASALTYWCICIISFFIIHKNAPFSEYGIFLTMYKFSWKACKNLLKIGLPIGFAVFFETSIFAAVTLLMSHFHTVTIASHQAAMNFASLLYMLPLSVSMALTIVVGFEAGAARFKDARSYSLIGIMMAIGFSLFTAACILLFREQIAGMYTSDPDVLRLTQHFLIYALFFQLSDAVAAPIQGALRGYKDVNYTLAAAFVSYWVIGLPVGYMVGTFTSLGAFGYWIGLIAGLAAGAVGLFFRLAKLQKRYSQKQHI", "sequence_length": 452, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f60ba1f55a0e1299c29e5b6ccdad58a6002ac6fe75fce181a458fd07824e95de", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31855.json", "taxon_id": "224308", "uniprot_accession": "O31855", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/subfamily-of-the-multidrug-and-toxic-compound-extrusion-mate-like-prot-cd13138.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13138", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/subfamily-of-the-multidrug-and-toxic-compound-extrusion-mate-like-prot-cd13138.yaml" } ], "pfam_ids": [ "PF01554" ], "protein_name": "Multidrug resistance transport protein YoeA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METSQEPLVTQKKSKPSVWRSMSLFLVPLLLSNVLQSVGQLVGMMAVGRWLGVDAVAAVSSFFPLFFLLISFTIGIGSGSSILIGQAYGAKNEERLKAVVGTTLTFTFLLGVVLAVIGSIFTLDILRLMGTPENVIHVSANYARILFYAMPFMFLYFAYTTFLRGTGDSKTPFYTLIVSTVINIALLPVLILGMFGFPKLGIYGSAYATVISTIATFLVLMVYLRKRKHPLQFDKTVRRYLKMDKELLVLLLRLGVPASINMILVSLSEIAVISFVNHYGSNATAAYGVVNQVASYVQMPAVSLGIAVSIFAAQSIGANEFDRLKQVIRVGIWLNYIIGGVLIILIYVFSHQILSLFLTEQETLYIAHRLLMITLWSYLLFGNAQIISATMRASGTVLWPTVISIFAIWGVEVPVAFVLSHYTKLEILGVWVGYPAAFAVSLLLIYGYYQFVWKKKQITRLIQ", "sequence_length": 463, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3a8f2628497c14ea907fa561ec701f4484e31d02a4ed350e3da1a07ee0250fce", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O34474.json", "taxon_id": "224308", "uniprot_accession": "O34474", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/mate-family-efflux-transporter-dinf-nf007690.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007690", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/mate-family-efflux-transporter-dinf-nf007690.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/dinf-and-similar-proteins-a-subfamily-of-the-multidrug-and-toxic-compo-cd13136.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13136", "section": "canonical_examples", "url": 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"9c1ffe3064060efe068dea225ace610f6d937c66e470579e5dfb359ec3818ebb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q38956.json", "taxon_id": "3702", "uniprot_accession": "Q38956", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/polyspecific-organic-cation-proton-antiporter-activity-go0140968.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140968", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/polyspecific-organic-cation-proton-antiporter-activity-go0140968.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/thiamine-transmembrane-transporter-activity-go0015234.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015234", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/thiamine-transmembrane-transporter-activity-go0015234.yaml" } ], "pfam_ids": [ "PF01554" ], "protein_name": "Multidrug and toxin extrusion protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPAEDSLGATIQPPELVRVPRGRSLRILLGLRGALSPDVRREAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLGVVGSAWANTTSQFFLSALLFLYVWWKRIHIHTWGGWTRECFQEWSSYTRLAIPSMFMVCIEWWTFEIGTFLAGLVNVTELGAQAVIYELASVAYMVPFGFGVAASVRVGNALGAGNADQARCSCTTVLLCAGVCALLVGILLAALKDVVAYIFTNDKDIISLVSQVMPIFAPFHLFDALAGTCGGVLRGTGKQKIGAVLNTIGYYGFGFPIGVSLMFAAKLGIIGLWAGLIVCVSFQAFSYLIYILRTNWSRVAEQAQVRAGLKSTKELIPTPADLPILEREVMDGVILPDIIRPESQTGQLVVEENSQCAVPTVGEVLTGRQLVFYRGMALTVSVAVLIAGIVVRVFNDRG", "sequence_length": 573, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f2749ec38b441f401890effbb902a82cebdf4ee02675adfb2e2f8ec0fb5b5609", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3V050.json", "taxon_id": "10090", "uniprot_accession": "Q3V050", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/transmembrane-transporter-activity-go0022857.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/xenobiotic-transmembrane-transporter-activity-go0042910.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042910", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/xenobiotic-transmembrane-transporter-activity-go0042910.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/xenobiotic-detoxification-by-transmembrane-export-across-the-plasma-membrane-go1990961.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990961", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/xenobiotic-detoxification-by-transmembrane-export-across-the-plasma-membrane-go1990961.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/mate-family-efflux-transporter-tigr00797.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00797", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/mate-family-efflux-transporter-tigr00797.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/eukaryotic-members-of-the-multidrug-and-toxic-compound-extrusion-mate--cd13132.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13132", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/eukaryotic-members-of-the-multidrug-and-toxic-compound-extrusion-mate--cd13132.yaml" } ], "pfam_ids": [ "PF01554" ], "protein_name": "Protein DETOXIFICATION 52", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METPNIISHTNLLSKIDLEKQNPAPIFPTITELKSEARSLFSLAFPTILAALILYARSAISMLFLGHIGELELAGGSLAIAFANITGYSVLAGLALGMDPLCSQAFGAGRPKLLSLTLQRTVLFLLTSSVVIVALWLNLGKIMIYLHQDPSISSLAQTYILCSIPDLLTNSFLHPLRIYLRAQGITSPLTLATLAGTIFHIPMNFFLVSYLGWGFMGVSMAAAASNLLVVIFLVAHVWIAGLHQPTWTRPSSECFKDWGPVVTLAIPSCIGVCLEWWWYEIMTVLCGLLIDPSTPVASMGILIQTTSLLYIFPSSLGLAVSTRVGNELGSNRPNKARLSAIVAVSFAGVMGLTASAFAWGVSDVWGWIFTNDVAIIKLTAAALPILGLCELGNCPQTVGCGVVRGTARPSMAANINLGAFYLVGTPVAVGLTFWAAYGFCGLWVGLLAAQICCAAMMLYVVATTDWEKEAIRARKLTCTEGVDVVITTTQTNGDLSEPLIYVVTVATD", "sequence_length": 508, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f70293cd9cb0ccaab71d8faae1541e0e1551b4a285bf0c608d2c4aa722b159d7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4PSF4.json", "taxon_id": "3702", "uniprot_accession": "Q4PSF4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-the-multidrug-and-toxic-compound-extrusio-cd13147.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-the-multidrug-and-toxic-compound-extrusio-cd13147.yaml" } ], "pfam_ids": [ "PF01554" ], "protein_name": "Uncharacterized transporter MJ0709", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNVEILLDDPKKAVIEVSKPIIVATFIESIYSLVDSIWVSGLGADALAAVGASFPILISIYAVSWGLSIGISSGIARRVGAKNKEEADKVANHAIILALIAGILYIIAVYPNLDTLFSLMGTYGDCKSLAIKYSSILVLGTVIFTICDALYGIFRGEGNTKIVMIASVIGTLTNIILDPIFIYMLNLGISGASYATLIAIIISLLILAYELFIKKSCYVTVKLSKFKPDLKIIADLIRVGIPSALIEITVAVSFFIMTSIIMMVGDSRGLAVYTGALRITEFGFIPMLGLASGATSVIGATYGARSFEKLKTAYFYTIKIGVLMEIIIVALIMLLSPILAYLFTYTKTSMGIHEELVKALRIVPLYLLFTPFILTTSAMFQGIGKGEKSLIISIFRSLICHISYAYLFAVILGLGMFGIYSGLVVGEFTAGIFAFLFGVLAIKALIKSK", "sequence_length": 450, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ed878b7cd51044af3cfe15a120ecf20775a8080c7ddb14faa1144d6dda656a32", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58119.json", "taxon_id": "243232", "uniprot_accession": "Q58119", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/dinf-and-similar-proteins-a-subfamily-of-the-multidrug-and-toxic-compo-cd13136.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13136", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/dinf-and-similar-proteins-a-subfamily-of-the-multidrug-and-toxic-compo-cd13136.yaml" } ], "pfam_ids": [ "PF01554" ], "protein_name": "Protein DETOXIFICATION 44, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAVATSFCFSPHRSPSRFGNPNSSIRRTIVCKSSPRDESPAVSTSSQRPEKQQNPLTSQNKPDHDHKPDPGIGKIGMEIMSIALPAALALAADPITSLVDTAFVGHIGSAELAAVGVSVSVFNLVSKLFNVPLLNVTTSFVAEEQAIAAKDDNDSIETSKKVLPSVSTSLVLAAGVGIAEAIALSLGSDFLMDVMAIPFDSPMRIPAEQFLRLRAYGAPPIVVALAAQGAFRGFKDTTTPLYAVVAGNVLNAVLDPILIFVLGFGISGAAAATVISEYLIAFILLWKLNENVVLLSPQIKVGRANQYLKSGGLLIGRTVALLVPFTLATSLAAQNGPTQMAGHQIVLEIWLAVSLLTDALAIAAQSLLATTYSQGEYKQAREVLFGVLQVGLATGTGLAAVLFITFEPFSSLFTTDSEVLKIALSGTLFVAGSQPVNALAFVLDGLYYGVSDFGFAAYSMVIVGFISSLFMLVAAPTFGLAGIWTGLFLFMALRLVAGAWRLGTRTGPWKMLWSAPEKPE", "sequence_length": 521, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "21097ce4e6730d0147623660442c9a0163d54a77f619729a6e6a05c357254505", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q84K71.json", "taxon_id": "3702", "uniprot_accession": "Q84K71", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/polyspecific-organic-cation-proton-antiporter-activity-go0140968.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140968", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/polyspecific-organic-cation-proton-antiporter-activity-go0140968.yaml" } ], "pfam_ids": [ "PF01554" ], "protein_name": "Multidrug and toxin extrusion protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSLQDTVALDHGGCCPALSRLVPRGFGTEMWTLFALSGPLFLFQVLTFMIYIVSTVFCGHLGKVELASVTLAVAFVNVCGVSVGVGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLFRQDPDVSRLTQDYVMIFIPGLPVIFLYNLLAKYLQNQGWLKGQEEESPFQTPGLSILHPSHSHLSRASFHLFQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVLKKLHLETWAGWSSQCLQDWGPFFSLAVPSMLMICVEWWAYEIGSFLMGLLSVVDLSAQAVIYEVATVTYMIPLGLSIGVCVRVGMALGAADTVQAKRSAVSGVLSIVGISLVLGTLISILKNQLGHIFTNDEDVIALVSQVLPVYSVFHVFEAICCVYGGVLRGTGKQAFGAAVNAITYYIIGLPLGILLTFVVRMRIMGLWLGMLACVFLATAAFVAYTARLDWKLAAEEAKKHSGRQQQQRAESTATRPGPEKAVLSSVATGSSPGITLTTYSRSECHVDFFRTPEEAHALSAPTSRLSVKQLVIRRGAALGAASATLMVGLTVRILATRH", "sequence_length": 602, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ec3515798a032df040d3e6c5147b3f8c2621463f8288b0754e884bb7a8f28ccf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q86VL8.json", "taxon_id": "9606", "uniprot_accession": "Q86VL8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus 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"path": "data/traits/function/molecular_function/go/thiamine-transmembrane-transporter-activity-go0015234.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015234", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/thiamine-transmembrane-transporter-activity-go0015234.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/transmembrane-transporter-activity-go0022857.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0022857", "section": "canonical_examples", "url": 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"MSASCLRLLTLSLFILGQCNVTAAQNGVDDEVTTVTAILDSATTAAADNSTVPTQSASNNNTSQSSKIPTIFGMRVELPADDPFGYDKHGVCSVTPEEEFKVVIYGNHLDKIHQIIWTFTNNCSEPAYVIDALNHFKVHFNHKATFHLTLKLLPEMVHAYKMCVKPKVAPGSPPLGEIYPLDDISTWLTTERPPKEYFLPLPLQIACIGFLLCLSALFSGLTLGLMSLTPQELELVIKSGAIKEQKCAAKILPVRKKGNLLLCSLLLGNVIVNSAISILMGELTTGIYALIGSTMGIVIFGEILPQSICVKKGLEVGAHTISITQLFIFLTFPIAWPVSKLLDCLLGDEYQAYDRKRLMELIKMSITDNGQVSNELKIAVGAMEIADKVVKDVMTKIEDVFMLPDTTVLNAKTVMEIVKMGYTRIPVYQYGDKNNVTDMLFVKDLALLDPDDNFTVKTVCGYHKHPVKFVMNDTPLPNLLEAFKKGEGHLAMVKRLINTDDKHDPSYVLVGVVTLEDIVEEILQAEINDEFDIVSDNVNKVKIKKEQNRDATKYFGDHEAPQTMISMQLQMVALQWLVSNERGFRQEFLDTNVLERLIRSSARRVDVSALMAMGDDAINVPRLAKVYTKDELSDKYILILEGRIQVTIGASGMMFEAGPWHHFGGEIMAKLVDGAATLGRSMSIVGTSELSARRPDLMFKPDYSAVVKEDCTYLEISVSAYINAYKASLMQRERPLNDLSDVSHNSSAHNSNLSLVEKPGPITDPSAMLVPENVRKPSVVSMDSPKILVGLGQHPVAPVAEEEEMALLDQP", "sequence_length": 811, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "be12a239eee806bae2c5bd8d4934644ab0b8aaeccfab8896e2a24f411c68444f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A3QM97.json", "taxon_id": "6239", "uniprot_accession": "A3QM97", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-gonad-development-go1905941.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905941", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-gonad-development-go1905941.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/two-tandem-repeats-of-the-cystathionine-beta-synthase-cbs-pair-domains-cd04590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd04590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/two-tandem-repeats-of-the-cystathionine-beta-synthase-cbs-pair-domains-cd04590.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cnnm-transmembrane-domain-ipr002550.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002550", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cnnm-transmembrane-domain-ipr002550.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ion-transporter-like-cbs-domain-ipr044751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR044751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ion-transporter-like-cbs-domain-ipr044751.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/cnnm.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/cnnm.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/cbs-domain-3-10-580-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.580.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/cbs-domain-3-10-580-10.yaml" } ], "pfam_ids": [ "PF00571", "PF01595", "PF25562" ], "protein_name": "Metal transporter cnnm-5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLFLFAIFQLALGSPGAPNGPNVPLQLTGVRRGLDHVQKLPSEAFSFKLFGKNLAEDGYYFTTATRCEDSHLSTVSTVRATVKESYCSYAILSVPEGLPFNVSTSVYHLCHKNATIYTQKFLVVHEKKAAAAKYMGDEIVFCFFCILMSAYASGMTLGYMKFSMIDLNTMLKIAEGDAAKKRVRRIMHFRRRSTQLVVTFSLFSSVFTVLFTTTCEKMLHGVSNEDVLKMAVPALICLIFAEMIPQAVCNSKFGFNLAASLWFVTVIIFFVTLPIAYPASLVLGRFLKRDVREVMTPEEKTCLLRSMAQNEREKTILENATTFTLKKVGQLMVPIEEVFMLSRSQKLNRSTVLTLVEKGYTRIPVYDNKNRSVIVGMLNMKNFNLLMVKTNLIDEPTVKEALHALELLKDRTVKFAVKYVNIEMNAHLLLNRMKTGDFHFACVVEYSAYDSKVVGIITIEDILEKLIGKIDEINELRVRSSIDDRGDNAVIGWCREAGSDKKYPLPFSQQLRILQHLLSECQVLKSLDIGIMKAKQILSLDRIRVGKKNDKLELHDLLLVIFEGTVLVTNEVETFERVIDVPSQRSSSTVNSQQHRQQTTDNSRSTPVPVLIIGKPLLNRLMKSLGSPFSEPLGPKDNVSELVVVSEEASYFKLRLEDLMNSINGCRKVDRNGHTTTGESLLQTLNSRASTSTSTTPACRTPLSVDARSQDETTPFMEKQE", "sequence_length": 722, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "acb1b422a94a87453fbf4df916107893e1d75228167c3a431d94c85e44e1064a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G5ED05.json", "taxon_id": "6239", "uniprot_accession": "G5ED05", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/corc-hlyc-pf03471.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03471", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/corc-hlyc-pf03471.yaml" } ], "pfam_ids": [ "PF00571", "PF01595", "PF03471" ], "protein_name": "Polyamine export protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLNSILVILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINAQRVLNMQENPGMFFTVVQIGLNAVAILGGIVGDAAFSPAFHSLFSRYMSAELSEQLSFILSFSLVTGMFILFADLTPKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANIIFRIFKLPMVRKDDITSDDIYAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTPRENVIWFDLHEDEQSLKNKVAEHPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLALNSGVQIRNTLIVPDTLTLSEALESFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMGDLVGQGLEEQIVARDENSWLIDGGTPIDDVMRVLDIDEFPQSGNYETIGGFMMFMLRKIPKRTDSVKFAGYKFEVVDIDNYRIDQLLVTRIDSKATALSPKLPDAKDKEESVA", "sequence_length": 447, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b517380ac174867866eca9a7e81c465ce0b6371537fee18f355201396590883e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AE45.json", "taxon_id": "83333", "uniprot_accession": "P0AE45", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/metal-transporter-cnnm1-2-4-immunoglobulin-like-domain-ipr057492.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057492", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/metal-transporter-cnnm1-2-4-immunoglobulin-like-domain-ipr057492.yaml" } ], "pfam_ids": [ "PF00571", "PF01595", "PF25511", "PF25562" ], "protein_name": "Metal transporter CNNM1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAAAAAAALGVRLRDCCSRGAVLLLFFSLSPRPPAAAAWLLGLRPEDTAGGRVSLEGGTLRAAEGTSFLLRVYFQPGPPVPAAPVPAPSLAPGENGTGDWAPRLVFIEEPPGAGGAAPSAVPTRPPGPQRCREQSDWASDVEVLGPLRPGGVAGSALVQVRVRELRKGEAERGGAGGGGKLFSLCAWDGRAWHHHGAAGGFLLRVRPRLYGPGGDLLPPAWLRALGALLLLALSALFSGLRLSLLSLDPVELRVLRNSGSAAEQEQARRVQAVRGRGTHLLCTLLLGQAGANAALAGWLYASLPPGVGDPGEDSGEAGVHFPWLPALVCTGAVFLGAEICPYSVCSRHGLAIASHSVCLTRLLMAAAFPVCYPLGRLLDWALRQEISTFYTREKLLETLRAADPYSDLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPVYEGDQRHNIVDILFVKDLAFVDPDDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKKGKSHLAIVQRVNNEGEGDPFYEVMGIVTLEDIIEEIIKSEILDETDLYTDNRKKQRVPHRERRRHDFSLFKLSDSEIRVKISPQLLLATHRFMATEVEPFKSLYLSEKILLRLLKHPNVIQELKFDERNKKAPEHYLYQRNRPVDYFVLLLQGKVEVEVGKEGLRFENGAFTYYGVPAIMTSACSDNDVRKVGSLAGSSVFLNRSPSRCSGLNRSESPNRERSDFGGSNTQLYSSSNNLYTPDYSVHILSDVQFVKITRQQYQNALTACHMDSSPQSPDMEAFTDGDSTKAPTTRGTPQTPKDDPVLTLLSNRTSLPCSRSDGLRSPGEVVYLRMEEMAFPQEEMPNFEEHRSQQVSLSPVAVPTTAASDPECCNIHLDPEASPCSSDSEENMGKKLLRTLSGRKRKKSADGERASEENSNLTPLIT", "sequence_length": 951, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6d58e6f7480e864d4c4824a0606ea764f43c290d574b7fb9406929e632639a1b", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/Q0GA42.json", "taxon_id": "10090", "uniprot_accession": "Q0GA42", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/cbs-domain-3-10-580-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.580.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/cbs-domain-3-10-580-10.yaml" } ], "pfam_ids": [ "PF01595" ], "protein_name": "Protein MAM3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFLPLRSRSRSGAPHWVYIILYHIFTIPKIYSLPLLSGSHVLNSRDVADSGHSVGDEASVTTYYIISIILVLLGGVFAGLTLGLMGQDEVYLKVISTSGSNSEKKLAKRVLDLISRGKHWVLVTLLLSNVITNETLPIVLDRCLGGGWQAVVSSTILIVIFGEIIPQSVCVKYGLQVGAFFCPFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMGVERLTKDEVTIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLPNEPNNFIGMLLVRVLISYDPDDCLPISHFPLATLPETSPNTSCLNILNYFQEGKAHMCVVSKEPGSSHGAIGVLTLEDVIEELIGEEIVDESDVFVDMHQHIMRQQPGPLSKRHITSYLHHLYTSSHKEHKAADQADESSPLLSPSNSNHPSEHPQQDLNNKSWKQKSNDGYDRSNAVLSPTPQVTEHGTIIPSNLASNPLNVNKSFVTIKKPANVPKIITTHTPHSSKEPSPAPHSNDKSLSAEEQQLLSDHAELSRQAVLHTQRSGQPTQVTTSTKTTRNSPDSISIPNSGANHGNENQNVTISTSYQNTKNGIVESVITVKGVPKTIIGPAKDWDESKSEYGNENINQENSNRSDDRESSSSNASLFSSIKNKFKNENANNNDRSNFTDSLSRTSNYDANGSSSTIKR", "sequence_length": 706, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "035522414fa6019b4dd2dbdaa4507285890ba0d78b6a9236f21d4b89829bffe2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12296.json", "taxon_id": "559292", "uniprot_accession": "Q12296", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-gonad-development-go1905941.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905941", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-gonad-development-go1905941.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/two-tandem-repeats-of-the-cystathionine-beta-synthase-cbs-pair-domains-cd04590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd04590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/two-tandem-repeats-of-the-cystathionine-beta-synthase-cbs-pair-domains-cd04590.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cnnm-transmembrane-domain-ipr002550.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002550", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cnnm-transmembrane-domain-ipr002550.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ion-transporter-like-cbs-domain-ipr044751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR044751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ion-transporter-like-cbs-domain-ipr044751.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/cnnm.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/cnnm.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/cbs-domain-3-10-580-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.580.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/cbs-domain-3-10-580-10.yaml" } ], "pfam_ids": [ "PF01595" ], "protein_name": "Metal transporter cnnm-4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELYAAGRYDSEPFKMNEHDIIQLYGEDVQYVKNAFLSSDSTCNNNVYSLEEHELDDDKKNLSGVLVEYKIKISLLQSSDGVKHLFFCTNPKSVDIARMLEIPEGKDKTRVYFMMPLLVLCLGLSATFSGLNLAIMSFSINDLKLIQESDSDKLMKQRAMDVMRLRRNSNFVLVTIIFGNCFCNISITLLMNYFAEFYGFGGFIFVELISTALLLIFTEILPSLIFTKNALAIASRLQYFVIFTMCITSPISYPLAMLLNIILGKENADDSAPLDLDALQIDELEDEEAADGNNFHEMMSVVKKTIKLREKLASDVMTEIDKVGMYSEHQQVTHSFLLDAYEQGHSRLPVYEGETRNKIRGVLNITDMMLLMDDEGRGSDTDLTLGTMLSVLEKRRKHCFVLDTMPVEHFMSELQQGCPMAIVVRYKEVDSEEDGTEIYEVCGIVTLEDCIEEILGEIFDEKDARQE", "sequence_length": 467, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0feafffd71da408d297e11ba8b5d3b2ea802de7f394c32460c471ee321bc6ecf", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q17586.json", "taxon_id": "6239", "uniprot_accession": "Q17586", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/two-tandem-repeats-of-the-cystathionine-beta-synthase-cbs-pair-domains-cd04590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd04590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/two-tandem-repeats-of-the-cystathionine-beta-synthase-cbs-pair-domains-cd04590.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cnnm-transmembrane-domain-ipr002550.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002550", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cnnm-transmembrane-domain-ipr002550.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ion-transporter-like-cbs-domain-ipr044751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR044751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ion-transporter-like-cbs-domain-ipr044751.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/cnnm.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/cnnm.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/cbs-domain-3-10-580-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.580.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/cbs-domain-3-10-580-10.yaml" } ], "pfam_ids": [ "PF01595" ], "protein_name": "DUF21 domain-containing protein At4g14230", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHPINAVVAARMLAGISQSNALQSEAIPFGSLEWITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPKEKKQSAAIFPVVQKQHQLLVTLLLFNALAMEGLPIYLDKIFNEYVAIILSVTFVLFVGEVIPQAICTRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVLGHNDPLFRRAQLKALVSIHGEAAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDREAMDKIQARGHSRVPVYSDNPKNVIGLLLVKSLLTVRPETGTLVSAVGIRRIPRVPANMPLYDILNEFQKGSSHMAAVVKVKGKSKGHPSTLHEENSGESNVSSNNSELTAPLLLKREGNHDSVIVRIDKANGQSFISEAGRQGFSHTSEEIEDGDVIGIITLEDVFEELLQEEIVDETDEYIDVHKRIRVATVAAVAISSLARAPSGRRLLGPKGSGGPKTPKASSTPKPDDKLMGTMTGPPQGNN", "sequence_length": 495, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4f776d84cf4d8fbabefabfc167c3a50a4fec4861784d3ce756528540cdfdf474", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4V3C7.json", "taxon_id": "3702", "uniprot_accession": "Q4V3C7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/two-tandem-repeats-of-the-cystathionine-beta-synthase-cbs-pair-domains-cd04590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd04590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/two-tandem-repeats-of-the-cystathionine-beta-synthase-cbs-pair-domains-cd04590.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cnnm-transmembrane-domain-ipr002550.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002550", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cnnm-transmembrane-domain-ipr002550.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ion-transporter-like-cbs-domain-ipr044751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR044751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ion-transporter-like-cbs-domain-ipr044751.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/cnnm.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/cnnm.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/cbs-domain-3-10-580-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.580.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/cbs-domain-3-10-580-10.yaml" } ], "pfam_ids": [ "PF01595" ], "protein_name": "DUF21 domain-containing protein At4g14240", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHLINAVAAARILSGIGQSNGNNGGEAIPFGSFEWITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPNEKKQAAAIFPVVQKQHQLLVTLLLCNAMAMEGLPIYLDKLFNEYVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVWLVRILMTLCYPIAFPIGKILDLVLGHNDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRPETETLVSAVCIRRIPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKVPPSTLLEEHTDESNDSDLTAPLLLKREGNHDNVIVTIDKANGQSFFQNNESGPHGFSHTSEAIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSIARAPSSRKLLAQKGTGGQNKQGQTNKVPGQEQDKMLGTITEPIRRNN", "sequence_length": 494, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e35ac2e5afb8fed3a2a96806fbeef55f11f59949319cf62c42d07c3e943e0d3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q67XQ0.json", "taxon_id": "3702", "uniprot_accession": "Q67XQ0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-cnnm4-n-pf25511.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25511", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-cnnm4-n-pf25511.yaml" } ], "pfam_ids": [ "PF00571", "PF01595", "PF25511", "PF25562" ], "protein_name": "Metal transporter CNNM4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPGGGGGRRDGWPARGRLLLAALLLLWTRAASGQSSPQQSVILGMRLASCNKSCGMNPDGIIFVSEGSTVNLRLYGHSLGDISSNLISFTEVDDAEAVHNSTNCLELTKDLVVQRLVNVSRGNTSGMLVVITKFLRRSENMKLYALCTRPRADGPWTRWTDKDSLLFMVEEHGRFLPLWLHILLVMVLLVLSGIFSGLNLGLMALDPMELRIVQNCGTEKERKYARKIEPIRRKGNYLLCSLLLGNVLVNTSLTILLDNLIGSGIMAVASSTIGIVIFGEILPQALCSRHGLAVGANTIVLTKVFMLLTFPLSFPISKLLDFVLGQEIRTVYNREKLMEMLKVTEPYNDLVKEELNMIQGALELRTKTVEDIMTQLHDCFMIRSDAILDFNTMSEIMESGYTRIPVFEDEQSNIVDILYVKDLAFVDPDDCTPLKTITRFYNHPVHFVFHDTKLDAMLEEFKKGKSHLAIVQKVNNEGEGDPFYEVLGLVTLEDVIEEIIKSEILDESDMYTDNRTRKRVSVKNKRDFSAFKDTDNELKVKISPQLLLAAHRFLATEVPQFSPSLMSEKILLRLLKYPDVIQELRFNEHNRYCVRHYLYTRNKPADCFVLILQGKVEVEAGKENMKFETGAFSYYGTMALSVAPPDRSPALPTPLSRSASLSYPDRNTDLTSTSLAGSNQFGSCILGQYVSDFSVRALTDLQYIKITRQQYQNGLMASRMDNSPQPTFDGCATCSENFMERPELPPVDETTTLLNERNSLLHRASEEETI", "sequence_length": 771, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "715bd05f5a32e2c6db295735c527b784777d1cb565c4cb28f51b9952f268dd75", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q69ZF7.json", "taxon_id": "10090", "uniprot_accession": "Q69ZF7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cnbh-cnnm2-c-pf25562.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25562", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cnbh-cnnm2-c-pf25562.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cnnm-pf01595.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01595", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cnnm-pf01595.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-cnnm4-n-pf25511.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25511", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-cnnm4-n-pf25511.yaml" } ], "pfam_ids": [ "PF00571", "PF01595", "PF25511", "PF25562" ], "protein_name": "Metal transporter CNNM4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPVGGGGRPVGGPARGRLLLAAPVLLVLLWALGARGQGSPQQGTIVGMRLASCNKSCGTNPDGIIFVSEGSTVNLRLYGYSLGNISSNLISFTEVDDAETLHKSTSCLELTKDLVVQQLVNVSRGNTSGVLVVLTKFLRRSESMKLYALCTRAQPDGPWLKWTDKDSLLFMVEEPGRFLPLWLHILLITVLLVLSGIFSGLNLGLMALDPMELRIVQNCGTEKERRYARKIEPIRRKGNYLLCSLLLGNVLVNTSLTILLDNLIGSGLMAVASSTIGIVIFGEILPQALCSRHGLAVGANTILLTKFFMLLTFPLSFPISKLLDFFLGQEIRTVYNREKLMEMLKVTEPYNDLVKEELNMIQGALELRTKTVEDIMTQLQDCFMIRSDAILDFNTMSEIMESGYTRIPVFEDEQSNIVDILYVKDLAFVDPDDCTPLKTITRFYNHPVHFVFHDTKLDAMLEEFKKGKSHLAIVQKVNNEGEGDPFYEVLGLVTLEDVIEEIIKSEILDESDMYTDNRSRKRVSEKNKRDFSAFKDADNELKVKISPQLLLAAHRFLATEVSQFSPSLISEKILLRLLKYPDVIQELKFDEHNKYYARHYLYTRNKPADYFILILQGKVEVEAGKENMKFETGAFSYYGTMALTSVPSDRSPAHPTPLSRSASLSYPDRTDVSTAATLAGSSNQFGSSVLGQYISDFSVRALVDLQYIKITRQQYQNGLLASRMENSPQFPIDGCTTHMENLAEKSELPVVDETTTLLNERNSLLHKASHENAI", "sequence_length": 775, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7443acd63c1787cb5314b3705c3041812b0e77ac5719a320a840a881171e86d5", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P4Q7.json", "taxon_id": "9606", "uniprot_accession": "Q6P4Q7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-gonad-development-go1905941.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905941", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-gonad-development-go1905941.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/two-tandem-repeats-of-the-cystathionine-beta-synthase-cbs-pair-domains-cd04590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd04590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/two-tandem-repeats-of-the-cystathionine-beta-synthase-cbs-pair-domains-cd04590.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cnnm-transmembrane-domain-ipr002550.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002550", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cnnm-transmembrane-domain-ipr002550.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ion-transporter-like-cbs-domain-ipr044751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR044751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ion-transporter-like-cbs-domain-ipr044751.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/cnnm.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/cnnm.yaml" } ], "pfam_ids": [ "PF01595", "PF25562" ], "protein_name": "Metal transporter cnnm-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIIKVFLRLLLLCAHIVCIDGKLEIRPVVSGVRIESDVDASGFLGYGDAGELLVEANTEVDLVIFGHGLENVEMVTFTDSVCVTSEFNVSESTFYIHKDMKIVFKYAFVAWPQPWRICLKSECHGLIQIDDDRTWIQAVQSTHETFMPVWAQCAILCLLFSISALCSGLTLGLMALTPQELSILMKSGSQREKKHAAAIYPIRCHGNRLLCTVIIMNVIVNTGITLLFDDLAEGLIAFVASTVGIVVFGEILPQSICVKYGLAVGANTIFITKFFMFLLFPITWPLGKILDKYAGVDIDVVNRSRMVEMLKMNMENDACDIDLSTLKIAIGAMELTKKSVRDVMTDIDDVFMLSEDQVLNAETMTKISDSGYTRIPVFEGNNRNKVKNLLYVSDLALIGKDNNITVKAVARFNKRRLRIVDESMPLTALMDEFKLGDYHLAMVAKATEVKKHHHGKFADGTVDSFILKSMKLVEATMMPQVENPEDHPVTLVGLITLEDITEELLQAEITDETDCYVTDDAQKKRRTNTSKKSAAELFCSEKKSERLSLHMLEMTEKWLLEKTPLFGNMNPKAFENLIQRNIREVLIVPPKNSTSPGTLNLFEAGVMSKRFLLILEGKATIRFNEKDLIFECGPWTCFGEAILEKMEMCISDRKEPSTGFFFLPDYNLTVSGPCRFLQISTSSLLHSLRITQFVKEIRTPKISITSDDDFGSPTRKASILDSSPNSRKRSSTSVMNSLALPTARLAAKIASVEELKPLME", "sequence_length": 760, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "670d18585e7d7d3c9cd2c4fe693672a5efab791366ae95c6e271fb15d83eb9a7", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9GYL2.json", "taxon_id": "6239", "uniprot_accession": "Q9GYL2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cnbh-cnnm2-c-pf25562.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25562", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cnbh-cnnm2-c-pf25562.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cnnm-pf01595.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01595", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cnnm-pf01595.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-cnnm4-n-pf25511.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25511", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-cnnm4-n-pf25511.yaml" } ], "pfam_ids": [ "PF00571", "PF01595", "PF25511", "PF25562" ], "protein_name": "Metal transporter CNNM2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIGCGACEPKVKMAGGQAAAALPTWKMAARRSLSARGRGILQAAAGRLLPLLLLSCCCGAGGCAAVGENEETVIIGLRLEDTNDVSFMEGGALRVSERTRVKLRVYGQNINNETWSRIAFTEHERRRHSPGERGLGGPAPPEPDSGPQRCGIRTSDIIILPHIILNRRTSGIIEIEIKPLRKMEKSKSYYLCTSLSTPALGAGGSGSTGGAVGGKGGSGVAGLPPPPWAETTWIYHDGEDTKMIVGEEKKFLLPFWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKNYAKRIEPVRRQGNYLLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIVIFGEIVPQAICSRHGLAVGANTIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRVTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDETDLYTDNRTKKKVAHRERKQDFSAFKQTDSEMKVKISPQLLLAMHRFLATEVEAFSPSQMSEKILLRLLKHPNVIQELKYDEKNKKAPEYYLYQRNKPVDYFVLILQGKVEVEAGKEGMKFEASAFSYYGVMALTASPVPLSLSRTFVVSRTELLAAGSPGENKSPPRPCGLNHSDSLSRSDRIDAVTPTLGSSNNQLNSSLLQVYIPDYSVRALSDLQFVKISRQQYQNALMASRMDKTPQSSDSENTKIELTLTELHDGLPDETANLLNEQNCVTHSKANHSLHNEGAI", "sequence_length": 875, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "48de23bd9f58075f5beb812d56887019d82745117759b303b875030d2e6187f7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H8M5.json", "taxon_id": "9606", "uniprot_accession": "Q9H8M5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/corc-hlyc-pf03471.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03471", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/corc-hlyc-pf03471.yaml" } ], "pfam_ids": [ "PF00571", "PF01595", "PF03471" ], "protein_name": "Putative DUF21 domain-containing protein At3g13070, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMGMALELSVLGRSVIDSKTLNLKRYGQKSKLSGRFLPRAELHCPVALSSSKHSNLSFRFRRSCEFSYRSRFMLFSSSQCHEGSQRKSDSGEKELESIKVLLKRGIVIGALVCGVFLYGCQKVLASAGVVEAGYEVFGQSVVLFKNALPKIYQVLTVLREQGLILAALLSLSAFFSMAETSITTLWPWKVRELAEKEPENGVFRMLRSDVTRFLTTILIGTTVVNIAATALVTEAATAIFGEAGVSAATGLMTVAILLLTEITPKSVAVHNAQEVARIVVRPVAWLSLVLYPVGRIVTYLSMGILKILGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASASLVDFHSMWVTHQYSRVPVFEQRIDNIVGIAYAMDLLDYVQKGDLLESTSVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTIGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRDEGIYDVDANTSIDQLSEELNMKMPEGIQYETVSGFVCEAFGYIPKTGESVKVVLEKESWEEDGEEEEGKQERQEPKEKNQIYRVEILAGNARKVSAVRFERVNDMDQVSEASDVKSMVPKFVRKWSSEEDDGNLSNEEDQSENAVLDEHVLADNSKKQQ", "sequence_length": 661, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "876f9134299afef6dea888351b65ed64d10720b723969f84d7562cfbc1ab2040", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LK65.json", "taxon_id": "3702", "uniprot_accession": "Q9LK65", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/metal-transporter-cnnm1-2-4-immunoglobulin-like-domain-ipr057492.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057492", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/metal-transporter-cnnm1-2-4-immunoglobulin-like-domain-ipr057492.yaml" } ], "pfam_ids": [ "PF00571", "PF01595", "PF25511", "PF25562" ], "protein_name": "Metal transporter CNNM1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAAAAAAAVGVRLRDCCSRGAVLLLFFSLSPRPPAAAAWLLGLRPEDTAGGRVSLEGGTLRAAEGTSFLLRVYFQPGPPATAAPVPSPTLNSGENGTGDWAPRLVFIEEPPGGGGVAPSAVPTRPPGPQRCREQSDWASDVEVLGPLRPGGVAGSALVQVRVRELRKGEAERGGAGGGGKLFSLCAWDGRAWHHHGAAGGFLLRVRPRLYGPGGDLLPPAWLRALGALLLLALSALFSGLRLSLLSLDPVELRVLRNSGSAAEQEQARRVQAVRGRGTHLLCTLLLGQAGANAALAGWLYTSLPPGFGGTGEDYSEEGIHFPWLPALVCTGAVFLGAEICPYSVCSRHGLAIASHSVCLTRLLMAAAFPVCYPLGRLLDWALRQEISTFYTREKLLETLRAADPYSDLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPVYEGDQRHNIVDILFVKDLAFVDPDDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKKGKSHLAIVQRVNNEGEGDPFYEVMGIVTLEDIIEEIIKSEILDETDLYTDNRKKQRVPQRERKRHDFSLFKLSDTEMRVKISPQLLLATHRFMATEVEPFKSLYLSEKILLRLLKHPNVIQELKFDEKNKKAPEHYLYQRNRPVDYFVLLLQGKVEVEVGKEGLRFENGAFTYYGVPAIMTTACSDNDVRKVGSLAGSSVFLNRSPSRCSGLNRSESPNRERSDFGGSNTQLYSSSNNLYMPDYSVHILSDVQFVKITRQQYQNALTACHMDSSPQSPDMEAFTDGDSTKAPTTRGTPQTPKDDPAITLLNNRNSLPCSRSDGLRSPSEVVYLRMEELAFTQEEMTDFEEHSTQQLTLSPAAVPTRAASDSECCNINLDTETSPCSSDFEENVGKKLLRTLSGQKRKRSPEGERTSEDNSNLTPLIT", "sequence_length": 951, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "be68dc7cd253181db845953ae6f9966324a23905ffb315f54b5c5a6d5f21f9fe", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NRU3.json", "taxon_id": "9606", "uniprot_accession": "Q9NRU3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/two-tandem-repeats-of-the-cystathionine-beta-synthase-cbs-pair-domains-cd04590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd04590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/two-tandem-repeats-of-the-cystathionine-beta-synthase-cbs-pair-domains-cd04590.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cnnm-transmembrane-domain-ipr002550.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002550", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cnnm-transmembrane-domain-ipr002550.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ion-transporter-like-cbs-domain-ipr044751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR044751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ion-transporter-like-cbs-domain-ipr044751.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/cnnm.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/cnnm.yaml" } ], "pfam_ids": [ "PF01595" ], "protein_name": "Putative DUF21 domain-containing protein At1g03270", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVLSTLALVRAAYSLNSFVFEAEDIRFGSPWWFVVVGVACFLVLFAGIMSGLTLGLMSLGLVELEILQQSGSSAEKKQAAAILPVVKKQHQLLVTLLLCNAAAMEALPICLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFLWLVRILMIICYPIAYPIGKVLDAVIGHNDTLFRRAQLKALVSIHSQEAGKGGELTHEETMIISGALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRIPVYLGNPKNIIGLLLVKSLLTVRAETEAPVSSVSIRKIPRVPSDMPLYDILNEFQKGSSHMAAVVKVKDKDKKNNMQLLSNGETPKENMKFYQSSNLTAPLLKHESHDVVVDIDKVPKHVKNRGRNFQQNGTVTRDLPCLLEDNEDAEVIGIITLEDVFEELLQAEIVDETDVYIDVHKRVRVAAAAAAAVSSITRASPAEIQSKVGQTVKKLVGKEARGTKNYTTKITEPLLAESDR", "sequence_length": 499, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "69d36c68253486547650a5235d75dc1dacb3c39063beb7b602a0c63e29300f92", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZVS8.json", "taxon_id": "3702", "uniprot_accession": "Q9ZVS8", "uniprot_release": "2026_03" } ], "pfam_id": "PF01595", "short_name": "CNNM", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf22-ipr002572.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf22-ipr002572.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf22-pf01629.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01629", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf22-pf01629.yaml" } ], "pfam_ids": [ "PF01629" ], "protein_name": "Uncharacterized protein MJ0614", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVMFMVFRILGRMTKIEKEIKEEEAKYDLIIKNEAKIEPIVAEEDMEFKQGDIKPIRIKKIKIPPMSVLLICPYGRHRVGHVVAVGEEVPMPIDVEREVDMAMFACGFEGEVKKGDLIGMLLILAAEKRE", "sequence_length": 130, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "190d1afc5cd75ccaf8a2a46bf58975e9d041e37b7e2573d2ac58bec45a675081", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58031.json", "taxon_id": "243232", "uniprot_accession": "Q58031", "uniprot_release": "2026_03" } ], "pfam_id": "PF01629", "short_name": "DUF22", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/helix-turn-helix-hxlr-type-ipr002577.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002577", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/helix-turn-helix-hxlr-type-ipr002577.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/hth-hxlr.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/hth-hxlr.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O31494", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01638" ], "protein_name": "Uncharacterized HTH-type transcriptional regulator YdzF", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d73db32b5584dd58f16aea3c1b3a4acc7fd9f6e46e49d37ec4d878f1347ce223", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNSLCRSKQAPFEYTLSLIGGKWKMRILYELGCEKTMRYGELKRAMPFITHKMLSAQLKELQTDGLIHRSEVSHTPLKVEYSLSDRGRSLYPLIDEMCKWGMAQGGPHM", "sequence_length": 109, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d73db32b5584dd58f16aea3c1b3a4acc7fd9f6e46e49d37ec4d878f1347ce223", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31494.json", "taxon_id": "224308", "uniprot_accession": "O31494", "uniprot_release": "2026_03" }, { 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"MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVKAMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIACENPFMVNQLAYSSSANGSLVGTTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSCPEWMDDFEADPKGKYAQNLLKKLIGGDVTPVDQYMCGVDGKPISAYAFLMAKDGITKLADVEADVAARADDEGFITLKNNLYRLVWHVERKDVPYPKQSIFTINSVVQKDGVENTPPHYFTLGCKILTLTPRNKWSGVSDLSLKQKLLYTFYGKESLENPTYIYHSAFIECGSCGNDSWLTGNAIQGFACGCGASYTANDVEVQSSGMIKPNALLCATCPFAKGDSCSSNCKHSVAQLVSYLSERCNVIADSKSFTLIFGGVAYAYFGCEEGTMYFVPRAKSVVSRIGDSIFTGCTGSWNKVTQIANMFLEQTQHSLNFVGEFVVNDVVLAILSGTTTNVDKIRQLLKGVTLDKLRDYLADYDVAVTAGPFMDNAINVGGTGLQYAAITAPYVVLTGLGESFKKVATIPYKVCNSVKDTLTYYAHSVLYRVFPYDMDSGVSSFSELLFDCVDLSVASTYFLVRLLQDKTGDFMSTIITSCQTAVSKLLDTCFEATEATFNFLLDLAGLFRIFLRNAYVYTSQGFVVVNGKVSTLVKQVLDLLNKGMQLLHTKVSWAGSNISAVIYSGRESLIFPSGTYYCVTTKAKSVQQDLDVILPGEFSKKQLGLLQPTDNSTTVSVTVSSNMVETVVGQLEQTNMHSPDVIVGDYVIISEKLFVRSKEEDGFAFYPACTNGHAVPTLFRLKGGAPVKKVAFGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVKEQVSDLLVKLLRGMPIPDFDLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVECDEECSEVEASDLEEGESECISETSTEQVDVSHEISDDEWAAAVDEAFPLDEAEDVTESVQEEAQPVEVPVEDIAQVVIADTLQETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYEADTEQTQSVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTIVDIPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVDGVQYYCYTSKDTLDDILQQANKSVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLANKEQEAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLVEGELLVQDLRLNKLLHWSDQTICYKDSVFYVVKNSTAFPFETLSACRAYLDSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPTFLHRFYSLKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDSTDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGLKACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVTTSTAPDFVAFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYSSDCNVVRYSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLVSSDGQPGGDAISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAMYKGKPILWVNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVESTPVEPPTVDVVALQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLHTLYVDPKYQVIVLKDNVLSSMLRLHTVESGDINVVAASGSLTRKVKLLFRASFYFKEFATRTFTATTAVGSCIKSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSALKTAGVVTGNVVKQCCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSVYHLYVFNQVLSSDVMFEDAQGLKKFYKEVRAYLGISSACDGLASAYRANSFDVPTFCANRSAMCNWCLISQDSITHYPALKMVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLHYFFAQTSIFVDWRSYNYAVSSAFWLFTHIPMAGLVRMYNLLACLWLLRKFYQHVINGCKDTACLLCYKRNRLTRVEASTVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNTFICEEVANDLTTALRRPINATDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTNLDKLKFKEVCKTTTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTSVGDSSEIATKMFDSFVNSFVSLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARGPAGVESDVETNEIVDSVQYAHKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAASVNQIVLRNSNGACIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVRFTANKIVGGAPTWFNALRDFTLKGYVLATIIVFLCAVLMYLCLPTFSMVPVEFYEDRILDFKVLDNGIIRDVNPDDKCFANKHRSFTQWYHEHVGGVYDNSITCPLTVAVIAGVAGARIPDVPTTLAWVNNQIIFFVSRVFANTGSVCYTPIDEIPYKSFSDSGCILPSECTMFRDAEGRMTPYCHDPTVLPGAFAYSQMRPHVRYDLYDGNMFIKFPEVVFESTLRITRTLSTQYCRFGSCEYAQEGVCITTNGSWAIFNDHHLNRPGVYCGSDFIDIVRRLAVSLFQPITYFQLTTSLVLGIGLCAFLTLLFYYINKVKRAFADYTQCAVIAVVAAVLNSLCICFVASIPLCIVPYTALYYYATFYFTNEPAFIMHVSWYIMFGPIVPIWMTCVYTVAMCFRHFFWVLAYFSKKHVEVFTDGKLNCSFQDAASNIFVINKDTYAALRNSLTNDAYSRFLGLFNKYKYFSGAMETAAYREAAACHLAKALQTYSETGSDLLYQPPNCSITSGVLQSGLVKMSHPSGDVEACMVQVTCGSMTLNGLWLDNTVWCPRHVMCPADQLSDPNYDALLISMTNHSFSVQKHIGAPANLRVVGHAMQGTLLKLTVDVANPSTPAYTFTTVKPGAAFSVLACYNGRPTGTFTVVMRPNYTIKGSFLCGSCGSVGYTKEGSVINFCYMHQMELANGTHTGSAFDGTMYGAFMDKQVHQVQLTDKYCSVNVVAWLYAAILNGCAWFVKPNRTSVVSFNEWALANQFTEFVGTQSVDMLAVKTGVAIEQLLYAIQQLYTGFQGKQILGSTMLEDEFTPEDVNMQIMGVVMQSGVRKVTYGTAHWLFATLVSTYVIILQATKFTLWNYLFETIPTQLFPLLFVTMAFVMLLVKHKHTFLTLFLLPVAICLTYANIVYEPTTPISSALIAVANWLAPTNAYMRTTHTDIGVYISMSLVLVIVVKRLYNPSLSNFALALCSGVMWLYTYSIGEASSPIAYLVFVTTLTSDYTITVFVTVNLAKVCTYAIFAYSPQLTLVFPEVKMILLLYTCLGFMCTCYFGVFSLLNLKLRAPMGVYDFKVSTQEFRFMTANNLTAPRNSWEAMALNFKLIGIGGTPCIKVAAMQSKLTDLKCTSVVLLSVLQQLHLEANSRAWAFCVKCHNDILAATDPSEAFEKFVSLFATLMTFSGNVDLDALASDIFDTPSVLQATLSEFSHLATFAELEAAQKAYQEAMDSGDTSPQVLKALQKAVNIAKNAYEKDKAVARKLERMADQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDNDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVKLQNNEIKPSGLKTMVVSAGQEQTNCNTSSLAYYEPVQGRKMLMALLSDNAYLKWARVEGKDGFVSVELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQVLGHIAATVRLQAGSNTEFASNSSVLSLVNFTVDPQKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAISVKPESTADQETYGGASVCLYCRAHIEHPDVSGVCKYKGKFVQIPAQCVRDPVGFCLSNTPCNVCQYWIGYGCNCDSLRQAALPQSKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVELDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQRLTEYTMMDLVYALRHFDQNSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKLGERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYYSYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANCVNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMDVSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQDFYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNKYFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPTMTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDKEVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGHMLDSYSVMLCGDNSAKFWEEAFYRDLYSSPTTLQAVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCGVSDVTKLYLGGMSYFCVDHRPVCSFPLCANGLVFGLYKNMCTGSPSIVEFNRLATCDWTESGDYTLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERQLLLVWEAGKSKPPLNRNYVFTGYHITKNSKVQLGEYIFERIDYSDAVSYKSSTTYKLTVGDIFVLTSHSVATLTAPTIVNQERYVKITGLYPTITVPEEFASHVANFQKSGYSKYVTVQGPPGTGKSHFAIGLAIYYPTARVVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDRFKVNETNSQYLFSTINALPETSADILVVDEVSMCTNYDLSIINARIKAKHIVYVGDPAQLPAPRTLLTRGTLEPENFNSVTRLMCNLGPDIFLSMCYRCPKEIVSTVSALVYNNKLLAKKELSGQCFKILYKGNVTHDASSAINRPQLTFVKNFITANPAWSKAVFISPYNSQNAVARSMLGLTTQTVDSSQGSEYQYVIFCQTADTAHANNINRFNVAITRAQKGILCVMTSQALFESLEFTELSFTNYKLQSQIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANVPYSRVISRMGFKLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGVNFVVQPVGVVDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKVQQLFYTEDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKHAFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAVCRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQGLENIAFNFVKQGHFIGVEGELPVAVVNDKIFTKSGVNDICMFENKTTLPTNIAFELYAKRAVRSHPDFKLLHNLQADICYKFVLWDYERSNIYGTATIGVCKYTDIDVNSALNICFDIRDNGSLEKFMSTPNAIFISDRKIKKYPCMVGPDYAYFNGAIIRDSDVVKQPVKFYLYKKVNNEFIDPTECIYTQSRSCSDFLPLSDMEKDFLSFDSDVFIKKYGLENYAFEHVVYGDFSHTTLGGLHLLIGLYKKQQEGHIIMEEMLKGSSTIHNYFITETNTAAFKAVCSVIDLKLDDFVMILKSQDLGVVSKVVKVPIDLTMIEFMLWCKDGQVQTFYPRLQASADWKPGHAMPSLFKVQNVNLERCELANYKQSIPMPRGVHMNIAKYMQLCQYLNTCTLAVPANMRVIHFGAGSDKGIAPGTSVLRQWLPTDAIIIDNDLNEFVSDADITLFGDCVTVRVGQQVDLVISDMYDPTTKNVTGSNESKALFFTYLCNLINNNLALGGSVAIKITEHSWSVELYELMGKFAWWTVFCTNANASSSEGFLLGINYLGTIKENIDGGAMHANYIFWRNSTPMNLSTYSLFDLSKFQLKLKGTPVLQLKESQINELVISLLSQGKLLIRDNDTLSVSTDVLVNTYRKLR", "sequence_length": 7078, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "37034eceadf17b5a65e3a6d258049b1b65c77419835a1a8eceb0e808a2aa2be4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/K9N7C7.json", "taxon_id": "1263720", "uniprot_accession": "K9N7C7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/histone-pf00125.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00125", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/histone-pf00125.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/histone-h2a-c-pf16211.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16211", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/histone-h2a-c-pf16211.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O75367", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00125", "PF01661", "PF16211" ], "protein_name": "Core histone macro-H2A.1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "aa0f71a84ca35b398c764801485f84aa4d60b539ab72046138bbeb4e5e618330", "sequence_version": 5, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQVVQADIASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN", "sequence_length": 369, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "aa0f71a84ca35b398c764801485f84aa4d60b539ab72046138bbeb4e5e618330", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/O75367.json", "taxon_id": "9606", "uniprot_accession": "O75367", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/o-acetyl-adp-ribose-deacetylase-activity-go0061463.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061463", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/o-acetyl-adp-ribose-deacetylase-activity-go0061463.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/purine-nucleoside-binding-go0001883.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0001883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/purine-nucleoside-binding-go0001883.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/purine-nucleoside-metabolic-process-go0042278.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042278", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/purine-nucleoside-metabolic-process-go0042278.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-single-species-biofilm-formation-on-inanimate-substrate-go1900231.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1900231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-single-species-biofilm-formation-on-inanimate-substrate-go1900231.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/o-acetyl-adp-ribose-deacetylase-nf001660.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF001660", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/o-acetyl-adp-ribose-deacetylase-nf001660.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/o-acetyl-adp-ribose-deacetylase-nf001664.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF001664", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/o-acetyl-adp-ribose-deacetylase-nf001664.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/macrodomain-o-acetyl-adp-ribose-oaadpr-family-macrodomains-are-found-i-cd02908.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd02908", "section": "canonical_examples", "url": 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"cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp1-pf11501.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11501", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp1-pf11501.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp2-n-pf19211.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19211", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp2-n-pf19211.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF16251", "PF16348", "PF19211", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLALGVSEKTHVQLSLPVLQVRDVLVRGFGDSVEEALAEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDAQGTNHGYKVVELVAELDGIQYGRSGTTLGVLVPHVGETPVAYRNVLLRKNGNKGAGGHSYGIDLKSYDLGVELGTDPIEDYEQNWNTKHGGGVLRELIRELNGGAFTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVWFTERSEKSYERQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYLPANAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFAYVGCYNKRAYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASFSASTCAFVDTVKGLDYKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSILTPLYGFPSQAAGVIRSIFTRALDTANHSIPDLQRAAITILDGISEQSLRLIDAMVYTSDLLTNSVIVMAYVTGGLVQQITQWLSNMLGTTVDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLVTGVFDIVKGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGAKLRTLNLGEVFIAQSKGLYRQCIRGKEQLQLLMPLRAPKEVTFFEGDSHDTVFTSEEVVLKNGELEALETPVDSFTNGAVIGTPVCVNGLMLLELKDKEQYCALSPGLLATNNVFSLKGGAPVKGVTFGEDTVLEVQGYKNVKITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYEDEEEIPEETCEHEYGTEDDYKGLPLEFGASTEIQQVDEEEEEDWLEEAIAAKPEPEPLPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKATNGAMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYANFNSQDVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYFAVNDQDLYDHVVLGYLDSLKPKVETPTQENLELKEQPAVETLTQENLELEELPVIEKPVDVKFKARIEEVNTSLEETKFLTSRLLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVGDVISSGDITCVIIPAKKAGGTTEMLAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRKCKSVFYVLPSKTPNDKEEILGTVSWNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFLKRGDKVVYHTVGSPIQFHLDGEVLLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPHAKHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRETMTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICGRDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRIDGAYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEVEDTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQAAVTTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAAFGVLLSNLGIPSYCDGVRESYVNSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNAITTKISLKGGKIVSTWFKLMLKATLLCVLAALFCYIIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIMATDDCFANKHAGFDSWFSQRGGSYRNDKSCPVVAAIITREIGFIVPGLPGTVLRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEAGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFSTFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLVLMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSQNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVCTVCGTWKGYGCSCDQLREPMMQSADASTFLNGFAV", "sequence_length": 4388, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "543bb4029c40f29d491ea1214c9b83bc69194870a2ded28883fc31669216a216", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6F5.json", "taxon_id": "389167", "uniprot_accession": "P0C6F5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus 512/2005", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp4-c-pf16348.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16348", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp4-c-pf16348.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp7-pf08716.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08716", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp7-pf08716.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp8-pf08717.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp8-pf08717.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp9-pf08710.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp9-pf08710.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp10-pf09401.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp10-pf09401.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp3-c-pf19218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp3-c-pf19218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp4-n-pf19217.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp4-n-pf19217.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp6-pf19213.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp6-pf19213.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-peptidase-pf08715.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-peptidase-pf08715.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF16348", "PF19211", "PF19212", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASNHISLAFANDEEISAIGFGSVEEAVSYYSDAAVNGFDQCRFVSLGLQDAVVGVEDDDVVMLITGVTQLRAYLGTFGDRPLNLRGWLLFSNCNYFLEELDLVFGRCGGTTIPVDQFMCGADGAPVIQEGDWTFMDYFQDSNQFTLNGITYVKAWDVDRKPNDYAKQNVTCIRRITYITDHRHVLADGTTMKTARHPKVNKSVVLDSPFDQIYKEVGSPFMGNGSTFVEMLKDPAFFHALITCECGRSEWTVGDWKGYNSLCCNIKCKPITIVTPKAVPGAVVITKAGIGAGLKCYNNVFLKHIIDLVVPGTNLGWGVWRIAKVQSKDDVATSGNVLVDDPEDRLDPCYFGNDGPFATKFKFQLLANSFDDEVKGAIVQGVVHVNTAICDVVKDILGLPWFVKKLGSLVTVMWDQFVAGVQSMKICTLKVVQLAKALSCATMSVVKGVITLVAEVPEIFKRLFYTLTSALKSLCTSSCDALVVAGKSFAKIGDYVLLPSALVRLVSSKVKGKAQSGIKQLQFATVVLGDTHKVESDRVEFSSVNLKMVDEEFPLNPVGHTVAVGNQAFFCSDGLYRFMADRDLVITSPIFKPELELEPIFECDAIPGFPKVAASNVAELCVKVDTLLFNYDKIYKKYSTIIKGDRCYIQCTHTFKAPSYYFDDDEFVELCTKYYKLPDFDAFYNAVHAATDMDQFCALCTSGFEVFIPRVPDCPPILNDIDGGSIWTSFILSVRSATDFIKTLKIDLGLNGVVVFVTKKFRKAGALLQKLYNAFLDTVTSFIKVAGVAFKYCATCVPKIVINGCYHTVTRLFAKDLQIPTEDGVADFNTFNHCVFPVNPTRIETDSLELEEVDFVEPGVDGKLVILDDYSFYSDGTNYYPSDGKGVVASCFKKKGGGVVTISDEVQVRTIDPVYKVRLEYEFEDETLVKVCEKAIGTKLKVTGDWSNLLETLEKAMDVVRQHLDVPDYFVYDEEGGTDLNLTIMVSQWPLSSDSEDDFKAVDDEPNANTDETVDTFAEDVAETQNVQQDVTQDEVEAVCDLVVKATEEGPIEHEELSEDQKEVQQALAFIEDKPVVVKPDVFAFSYASYGGLKVLNQSSNNCWVSSALVQLQLTGLLDSDEMQLFNAGRVSPMVKRCYESQRAIFGSLGDVSACLESLLKDRDGMSITCTIDCGCGPGVRVYENAIFRFTPLKTAFPMGRCLICSKTLMHTITQMKGTGIFCRDATALDVDTLVVKPLCAAVYVGAQDGGHYLTNMYDANMAVDGHGRHPIKFNTINTLCYKDVDWEVSNGSCDVKPFLTYKNIEFYQGELSALLSVNHDFVVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIKCKEHSILNVVGPRKGKHAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAFLACVGDRVCKCFCYTDKERLAIQNFVTSFQTEQPVEPLPVIQEVKGVQLEKPVPDVKVENPCEPFRIEGDAKFYDLTPSMVQSLQVTRLVSFTNSDLCLGSFVRDCDGYVQGSLGGAIANYKKSNPVLPAGNCVTLKCDGFISFTFVILPKEGDTNYEKNFNRAIAKFLKLKGSLLVVVEDSSVFNKISHASVAGYVAKPALVDTLFEAKPVQVVVTQDQRSFHTVELSTSQTYGQQLGDCVVEDKKVTNLKPVSKDKVVSVVPNVDWDKHYGFVDAGIFHTLDHTMFVFDNNVVNGKRVLRTSDNNCWINAVCLQLQFANAKFKPKGLQQLWESYCTGDVAMFVHWLYWITGVEKGEPSDAENTLNIISRFLKPQGSVEMLRATSTTCDGTCSTKRVVSTPVVNASVLKVGLDDGNCVHGLPLVDRVVSVNGTVIITNVGDTPGKPVVATENLLLDGVSYTVFQDSTTGVGHYTVFDKEAKLMFDGDVLKPCDLNVSPVTSVVVCNNKKIVVQDPVKRVELDASKFLDTMNVASEKFFTFGDFVSRNIIVLIVYLFSLLAICFRALKKRDMKVMAGVPERTGIILKRSVKYNYKALKFFFRLKFQYIKVFLKFSLVLYTLYALMFMFIRFTPVGTPICKRYTDGYANSTFDKNDYCGNVLCKICLYGYEELSDFTHTRVIWQHLKDPLIGNILPLFYLVFLIIFGGFFVRIGITYFIMQYINAAGVALGYQDNVWLLHLLPFNSMGNIIVVAFIVTRILLFLKHVLFGCDKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDSYGYGCTFINDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLYSGSTFWKYNFDITEAKYACKDVLKNCNILTDFVVFNNSGSNVTQVKNACVYFSQLLCKPIKLVDSALLASLNVDFSANLHKAFVEVLSNSFGKDLSNCSNMNECRESLGLSDVPEEEFSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEKLAVHDIANCMRVGAKVVNHNVLTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRMHLTIPTISVANKKGAGLPSLFTRLYSFFWHLCVLIVVLFVATSLLDFSAQVTSDTQYDFKYIENGVLKVFEKPLDCVHNAFVNFNEWHNAKFGSIPTNSRRCPIVVGTSDEVRYIPGVPAGVFLYGKSLIFAMSTIFGTSGLCFDDRGLTDPDSCIFNSACTTLSGIGGRNVYCYREGVVDNAKLYSSLLPHSYYRLMDGNHIVLPEIITRGFGIRTIKTQAMTYCRTGECIDSQAGVCVGLDRFFVYSKTPGSDYVCGTGFFSLLFNVIGMFSNSIPVTVMSGQILLNCVVAFTAVMACFAFTKFKRLFGDMSFGVLSVGLCTVVNNLSYVVTQNSIGMLAYATLYFLCTKGVRYSWVWHVGFAISYCFLAPWWVVLAYLICALLEFLPNLFKLKVSTQLFEGDKFVGSFESAASGTFVLDMHSYQKLANSISTEKLKQYCASYNRYKYYSGSASEADYRLACFAHLAKAMSDFANDHMDKLYTPPTVSYNSTLQAGLRKMAQPSGIVEGCIVRVSYGNLTLNGLWLGDTVICPRHVIASNTTNVIDYDHAMSLVRLHNFSISSGNMFLGVISASMRGTLLHIKVNQSNVNTPNYTYKVLKPGDSFNILACYDGSAAGVYGVNMRTNYTIRGSFISGACGSPGYNINNGVVEFCYMHHLELGSGCHVGSDMDGTMYGKYEDQPTLQIEGASNLVTENVCSWLYGALINGDRWWLSSVSVGVDTYNEWALRNGMTALKNVDCFSLLVAKTGVDVGRLLASIQKLHGNFGGKSILGCTSLCDEFTLSEVVKQMYGVTLQSGKVSRAFRNASIVCCLLFLFLSEMLNHSKLFWINPGYITPVFLAIIVASSALMLLVKHKLLFLQLYLLPSLCIVSGYNIFKDYHFYTYMLEEFDYKVPFGGFNVTGVLNISLCCFVMGLHTFRFLQTPNKIFSYVVAVLTVLYTYYYSTDVLGLILTSMSGFTNYWFIGTATYKLATYVLPHTSLLDSFDAIKAVVFLYLLLGYCNCVYYGSLYWINRFCKLTLGCYEFKVSAAEFKYMVANGLRAPTGVFDALILSLKLIGVGGRKTIKISSVQSKLTDLKCTNVVLLGCLSNMNIAANSREWAYCVDLHNKINLCNDAEAAQEMLLALLAFFLSKNSAFGVDELLDSYFNDSSVLQSVAATYVNLPSYLAYETARQSYEDALANGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAASQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILSLAKDGVVPLSIIPAVSATKLNIVVSDIESYSKIQREGCVHYAGVIWSVVDIKDNDGKPVHAKEVVTSNVESLAWPLFLNCERIIKLQNNEIIPSKIKQRPIKAEGEGVVADGNALYSNEGGRTFMYAFISDKPDLKVVKWEFDGGSNAIELEPPCKFLVEAPSGPVVKYLYFVRNLNNLRRGAVLGFIGATVRLQAGKQTEQATNSSLLTLCAFAVDPPKTYLDAVKSGHRPVGNCVKMLANGSGNGQAITNGVEASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVPLGTLDPIRFVLENTVCKVCGCWQANGCTCDRAVIQSVDSGYLNECGALVQLD", "sequence_length": 4128, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cd75dbf7b9bc8f21f68d8a7f592ecc91c58f18f499fbd4f1dd07ac68c5f6b5e1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6F6.json", "taxon_id": "693999", "uniprot_accession": "P0C6F6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus 133/2005", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp2-c-pf19212.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19212", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp2-c-pf19212.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF16251", "PF16348", "PF19211", "PF19212", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSKAGVTTQGARGKYRAELYNEKRSDHVACTVPLCDTEDMASKLTPWFEDGETAFNQVSSILKEKGKILFVPMHMQRAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLNVKPLGMFFPYDSSLETGEHTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKYSQNLLKKLIGGDCIPVDQYMCGKNGKPIADYAKIVAKEGLTTLADIEVDVKSRMDSDRFIVLNKKLYRVVWNVTRRNVPYSKQTAFTVVSVIQCDDKESVPEHTFTIGSQILMVSPLKATNNKNFNLKQRLLHTFYGKEAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGANYSANDVDLQSSGLVPKNALFLANCPCANNGACSHNAAQVYSILDGKACVEVGGKSFTLTFGGVVYAYMGCCDGTMYFVPRAKSCVSRIGDAIFTGCTGTWDKVVETANLFLEKAQHSLNFCQQFALTEVVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDYIRDAINIGANGVCNATINAPFIAFTGLGESFKKVAAIPWKICSNLKSALDYYCSNIMFRVFPYDIPCDVNDFVELLLDCGKLTVATSYFVLRYLDEKFDTVLGTVSNACQTALSSFLNACVAASRATAGFISDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIMSKAMKLLHTNVSWAGTKLSAIIYEGREALLFNSGTYFCLSTKAKTLQDQMNLVLPGDYNKKTLGILDPVPNADTIDVTANSTVVDVVHGQLEPTNEHGPSMIVGNYVLVSDKLFVRTDDEEFYPLCINGKVVSTLFRLKGGMPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKDEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEFIEDDYLSDELPIADDEEAWTRAVEEVMPLDDILVAEIELEEDLPLETALESVEAEVGESISDELCVVETAKAQEPSVESTDSTPSTSTVVSENDLSVKPMSRVAETGDVLEVETAVVGGPVSDVTASVVTNDIVSVEQAQQCGVSSLPIQDEASENQVHQVPDLQCTSETKVEIVQPRQDLRPRRLRKSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISNSGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTIVVTPLISSGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATPSKPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVDGVSYYLYSARDALTDVIAAANGCPGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDVAIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDATTFRKQLGATFYKGVDISDALPTVKMGGESLFVADNLSESEEVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSTPWLLVSGLNEVKVSTSTDPVYRAFNVFQGVETSVGHYVHVRVKDGLFYKYDSGSLTKTSDMKCKMTSVWYPKVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFNNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQLIEPNVPVVEDVSITTRKLIEVKCKGLNKPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIVANGGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGRSFCKFVVNYGVLQNMFLFLKMLFFLPFNYLWPKKQPTVDVGVSGLRTAGVVTTNIVKQCGTAAYYMLLGKFKRVDWKATLRLFLLLCTTILLLSSIYHLVIFNQVLSSDVMLEDATGILAMYKEVRSYLGIRTLCDGLAVEYRNTSFDVVDFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQTVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAADNILSVKFSATKIVGGAPSWLLRVRDLTVKGYCILTLFVFTVAVLSWFCLPSYSIATVNFNDDRILTYKVIENGIVRDIAPNDACFANKYGHFSKWFNENHGGVYRNSVDCPITIAVIAGVAGARVANVPATLAWVGRQIVLFVSRVFANTNVCFTPTNEIPYDTFSDSGCVLSSECTLFRDAEGNLNPFCYDPTVLPGASSYADMKPHVRYDMYDSDMYIKFPEVIFESTLRITKTLATQYCRFGSCEESAAGVCISTNGSWALYNQNYSTRPGIYCGDDYFDIVRRLAVSLFQPVTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADYTQCAVVAVVAALLNSLCLCFIVANPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGTVVPIWMLASYTVGVMLRHLFWVLAYFSKKHVDVFTDGKLNCSFQDAASNIFVIGKDTYVALRNAITQDSFVRYLSLFNKYKYYSGAMDTASYREACAAHLCKALQTYSETGSDILYQPPNCSVTSSVLQSGLVKMSAPSGAVENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQLTDPNYDALLISKTNHSFIVQKHIGAQANLRVVAHSMVGVLLKLTVDVANPSTPAYTFSTVKPGASFSVLACYNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVLNFVYMHQMELSNGTHTGSSFDGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNGCKWFVKPTRVGIVTYNEWALSNQFTEFVGTQSIDMLAHRTGVSVEQMLAAIQSLHAGFQGKTILGQSTLEDEFTPDDVNMQVMGVVMQSGVKRISYGFMHWLMSTLVLAYVSVMQLTKFTMWTYLFETIPTQMTPLLFGFMACVMFTVKHKHTFLSLFLLPVALCLTYANIVYEPQTLVSSTLIAVANWLTPTSVYMRTTHLDFGLYISLSFVLAIIVRRLYRPSMSNLALALCSGVMWFYTYVIGDHSSPITYLMFITTLTSDYTITVFATVNLAKFISGLVFLYAPHLGFILPEVKLVLLIYLCLGYMCTMYFGVFSLLNLKLRVPLGVYDYSVSTQEFRFLTGNGLHAPRNSWEALILNFKLLGIGGTPCIKVATVQSKLTDLKCTSVVLLTVLQQLHLESNSKAWSYCVKLHNEILAAVDPTEAFERFVCLFATLMSFSANVDLDALANDLFENSSVLQATLTEFSHLATYAELETAQSSYQKALNSGDASPQVLKALQKAVNVAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDNDVLNGVIANARNGCVPLSIVPLCASNKLRVVIPDISVWNKVVNWPSVSYAGSLWDVTVINNVDNEVVKPTDVVETNESLTWPLVIECSRASSSAVKLQNNEIHPKGLKTMVVTAGIDQVNCSSSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKDGFINIELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQAGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPEATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAHVRDPVGFLLKNVPCNVCQYWVGYGCNCDALRNNTVPQSKDTNFLNESGVLV", "sequence_length": 4441, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "33869f4280c186c9d575440c541df338e056a86f17221ef5a3b6026b14a35c40", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6F7.json", "taxon_id": "389230", "uniprot_accession": "P0C6F7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus HKU3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-sud-c-pf12124.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12124", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-sud-c-pf12124.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp4-c-pf16348.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16348", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp4-c-pf16348.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp7-pf08716.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08716", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp7-pf08716.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp8-pf08717.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp8-pf08717.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp9-pf08710.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp9-pf08710.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12379", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp10-pf09401.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp10-pf09401.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp3-c-pf19218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp3-c-pf19218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp4-n-pf19217.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp4-n-pf19217.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp6-pf19213.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp6-pf19213.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-peptidase-pf08715.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-peptidase-pf08715.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF16251", "PF16348", "PF19211", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRNVLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGGVVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVWFTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYLPTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKRAYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASFSASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQAAGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAYVTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIKGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQCIRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVGTPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGSYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLNGFAV", "sequence_length": 4376, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e245bec24665357a98a81fcc72dd64fd1371d28a010baa58cfb6afb6d2c1797b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6F8.json", "taxon_id": "442736", "uniprot_accession": "P0C6F8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bovine coronavirus (strain 98TXSF-110-ENT)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-nab-pf16251.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-nab-pf16251.yaml" } ], "pfam_ids": [ "PF01661", "PF01831", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11963", "PF16251", "PF16348", "PF19213", "PF19217", "PF19218", "PF22104" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMVDCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRGCNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQSRKFIVPWVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYALIRGYRGVKPLLYVDQYGCDYTGGLADGLEAYADKTLQEMKALFPIWSQELPFDVTVAWHVVRDPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILRQHNLVDIMSCFYMEADAVVNAFYGVDLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYETGDLLAQSSGVLPVNPVLHTKSAAGYGGFGCKDSFTLYGQTVVYFGGCVYWSPARNIWIPILKSSVKSYDGLVYTGVVGCKAIVKETNLICKALYLDYVQHKCGNLHQRELLGVSDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKICHAVVSKSKELLDVSLDSLSAAIHYLNSKIVDLAQHFSDFGTSFVSKIVHFFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKNIPRYASAVAQAFRSVAKVVLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCGYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLEESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEMSDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFLLSLVCFIGLWCLMPTYTVHKSDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVVDQDLGSTVFNVPTKVLRYGYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFAMADGSPQPYCYTEGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFAYCRRLGTSVRSDGTFEEMALTTFMITKDSYCKLKNSLSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLVIDALASMTGVSLETLLAAIKRLKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLVKGIVCWIMASTFLFSCIITAFVKWTMFMYVTTNMLSITFCALCVISLAMLLVKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVEYTYTDEVIYGMLLLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILLMLASLFGTYTWTTALSMAAAKVIAKWVAVNVLYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARSSGSANQQQLKQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQTIQDSDGTNKQLNEISDDCNWPLVIIANRHNEVSATVLQNNELMPAKLKTQVVNSGPDQTCNTPTQCYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGIKDPVSYVLTHDVCQVCGFWRDGSCSCVSTDTTVQSKDTNFLNGFGVRV", "sequence_length": 4383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f40b354462db645b57f9bc71b7743d9394f4b82ae4ff5fffc222e5186f6466e6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6T8.json", "taxon_id": "233262", "uniprot_accession": "P0C6T8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bovine coronavirus (strain 98TXSF-110-LUN)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-nab-pf16251.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-nab-pf16251.yaml" } ], "pfam_ids": [ "PF01661", "PF01831", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11963", "PF16251", "PF16348", "PF19213", "PF19217", "PF19218", "PF22104" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMVDCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRGCNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQSRKFIVPWVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYALIRGYRGVKPLLYVDQYGCDYTGGLADGLEAYADKTLQEMKALFPIWSQELPFDVTVAWHVVRDPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILRQHNLVDIMSCFYMEADAVVNAFYGVDLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYETGDLLAQSSGVLPVNPVLHTKSAAGYGGFGCKDSFTLYGQTVVYFGGCVYWSPARNIWIPILKSSVKSYDGLVYTGVVGCKAIVKETNLICKALYLDYVQHKCGNLHQRELLGVSDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKICHAVVSKSKELLDVSLDSLSAAIHYLNSKIVDLAQHFSDFGTSFVSKIVHFFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKNIPRYASAVAQAFRSVAKVVLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCGYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVVDAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLEESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEMSDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTVDGVNFTNRFVPVGENFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANDLSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFLLSLVCFIGLWCLMPTYTVHKSDFQLPVYTSYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVVDQDLGSTVFNVPTKVLRYGYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFAMADGSPQPYCYTEGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFAYCRRLGTSVRSDGTFEEMALTTFMITKDSYCKLKNSLSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLVIDALASMTGVSLETLLAAIKRLKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLVKGIVCWIMASTFLFSCIITAFVKWTMFMYVTTNMLSITFCALCVISLAMLLVKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVEYTYTDEVIYGMLLLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILLMLASLFGTYTWTTALSMAAAKVIAKWVAVNVLYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARSSGSANQQQLKQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQTIQDSDGTNKQLNEISDDCNWPLVIIANRHNEVSATVLQNNELMPAKLKTQVVNSGPDQTCNTPTQCYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGIKDPVSYVLTHDVCQVCGFWRDGSCSCVSTDTTVQSKDTNFLNGFGVRV", "sequence_length": 4383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0baf472314e898303e4ef5af469a7a1df5b0e3b4016224acbc79605027811799", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6T9.json", "taxon_id": "233264", "uniprot_accession": "P0C6T9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human coronavirus HKU1 (isolate N2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp4-c-pf16348.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16348", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp4-c-pf16348.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp7-pf08716.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08716", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp7-pf08716.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp8-pf08717.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp8-pf08717.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp9-pf08710.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp9-pf08710.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/b-cov-a-nsp1-pf11963.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11963", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/b-cov-a-nsp1-pf11963.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp10-pf09401.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp10-pf09401.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp3-c-pf19218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp3-c-pf19218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp4-n-pf19217.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp4-n-pf19217.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp6-pf19213.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp6-pf19213.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-peptidase-pf08715.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-peptidase-pf08715.yaml" } ], "pfam_ids": [ "PF01661", "PF01831", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11963", "PF16251", "PF16348", "PF19213", "PF19217", "PF19218", "PF22104" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKIDCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPLHSLGGFPKGYVMGLFRSYKTKRYVVHHLSMTTSTTNFGEDFLGWIVPFGFMPSYVHKWFQFCRLYIEESDLIISNFKFDDYDFSVEDAYAEVHAEPKGKYSQKAYALLRQYRGIKPVLFVDQYGCDYSGKLADCLQAYGHYSLQDMRQKQSVWLANCDFDIVVAWHVVRDSRFVMRLQTIATICGIKYVAQPTEDVVDGAVVIREPVHLLSADAIVLKLPSLMKVMTHMDDFSIKSIYNVDLCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSSEVKAQSSGVIPENPVLFTNSTDTVNPDSFNLYGYSVTPFGSCIYWSPRPGLWIPIIKSSVKSYDDLVYSGVVGCKSIVKETALITHALYLDYVQCKCGNLEQNHILGVNNSWCRQLLLNRGDYNMLLKNIDLFVKRRADFACKFAVCGDGFVPFLLDGLIPRSYYLIQSGIFFTSLMSQFSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDASAPATGWLLYQLLNGLFVVSQANFNFVALIPDYAKILVNKFYTFFKLLLECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLIPGFVLPCNAQEQQIYFFEGVAESVIVEDDVIENVKSSLSSYEYCQPPKSVEKICIIDNMYMGKCGDKFFPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEEIVTGDNDDQIVVTGDDVDDIESVYDFDTYKALLVFNDVYNDALFVSYGSSVETETYFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIPKAIVLPQGGYVADFAYWFLNQFDINAYANWCCLKCGFSFDLNGLDAVFFYGDIVSHVCKCGHNMTLIAADLPCTLHFSLFDDNFCAFCTPKKIFIAACAVDVNVCHSVAVIGDEQIDGKFVTKFSGDKFDFIVGYGMSFSMSSFELAQLYGLCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTKALAVRLTANVGRVIKFETDAYKLFLSGDDCFVSNSSVIQEVLLLRHDIQLNNDVRDYLLSKMTSLPKDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLAKKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLSLADISAVQSSFGFDQQQLLAYYNFLTVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQHINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAICELELICDCGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIVHCTKLNVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTKPIIKAQFKPFAKVDGVYTNFKLVGHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFKGCETFGKPVIWLCHDEASLNSLTYFNKPSFKSENRYSVLSVDSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRDDNQTLLVPKIFKARAIEFYGFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNLFCLALKNAFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTICDFYSKLGVGFTSHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDADRANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKACVKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFILLWALLPTYSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSFYYHNSMDCPIVVAVMDEDIGSTMFNVPTKVLRHGFHVLHFLTYAFASDSVQCYTPHIQISYNDFYASGCVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVISEGIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFYQFFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVIANHVLWLFSYCRKIGVNVCNDSTFEETSLTTFMITKDSYCRLKNSVSDVAYNRYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVKMVSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLGDFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKADLVLDALASMTGVSIETLLAAIKRLYMGFQGRQILGSCTFEDELAPSDVYQQLAGVKLQSKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYINTHMIGVTLCVLCFVSFMMLLVKHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGLTYVWLSYFVPAVNFTYVYEVFYGCILCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLFITAFLGTYTWTTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFRMPMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDVKCANVVLLNCLQHLHVASNSRLWQYCSILHNEILSTSDLSVAFDKLAQLLIVLFANPAAVDTKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIKQLEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPALAANTLTIIIPDKQVFDKVVDNVYVAYAGSVWHIQTVQDADGINKQLTDISVDSNWPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNSGSDMNCNIPTQCYYNNGSSGRIVYAVLSDVDGLKYTKIIKDDGNCVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPLGIKDPILYVLTHDVCQVCGFWRDGSCSCVGSGVAVQSKDLNFLNGFGVLV", "sequence_length": 4441, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "46454a6a12fef637220dcb30723d5709ed239f05a21f959a01717bdb527a00cd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6U4.json", "taxon_id": "443240", "uniprot_accession": "P0C6U4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human coronavirus NL63", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp2-n-pf19211.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19211", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp2-n-pf19211.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF16348", "PF19211", "PF19212", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFYNQVTLAVASDSEISGFGFAIPSVAVRTYSEAAAQGFQACRFVAFGLQDCVTGINDDDYVIALTGTNQLCAKILPFSDRPLNLRGWLIFSNSNYVLQDFDVVFGHGAGSVVFVDKYMCGFDGKPVLPKNMWEFRDYFNNNTDSIVIGGVTYQLAWDVIRKDLSYEQQNVLAIESIHYLGTTGHTLKSGCKLTNAKPPKYSSKVVLSGEWNAVYRAFGSPFITNGMSLLDIIVKPVFFNAFVKCNCGSESWSVGAWDGYLSSCCGTPAKKLCVVPGNVVPGDVIITSTSAGCGVKYYAGLVVKHITNITGVSLWRVTAVHSDGMFVASSSYDALLHRNSLDPFCFDVNTLLSNQLRLAFLGASVTEDVKFAASTGVIDISAGMFGLYDDILTNNKPWFVRKASGLFDAIWDAFVAAIKLVPTTTGVLVRFVKSIASTVLTVSNGVIIMCADVPDAFQSVYRTFTQAICAAFDFSLDVFKIGDVKFKRLGDYVLTENALVRLTTEVVRGVRDARIKKAMFTKVVVGPTTEVKFSVIELATVNLRLVDCAPVVCPKGKIVVIAGQAFFYSGGFYRFMVDPTTVLNDPVFTGDLFYTIKFSGFKLDGFNHQFVTASSATDAIIAVELLLLDFKTAVFVYTCVVDGCSVIVRRDATFATHVCFKDCYNVWEQFCIDNCGEPWFLTDYNAILQSNNPQCAIVQASESKVLLERFLPKCPEILLSIDDGHLWNLFVEKFNFVTDWLKTLKLTLTSNGLLGNCAKRFRRVLVKLLDVYNGFLETVCSVAYTAGVCIKYYAVNVPYVVISGFVSRVIRRERCDMTFPCVSCVTFFYEFLDTCFGVSKPNAIDVEHLELKETVFVEPKDGGQFFVSGDYLWYVVDDIYYPASCNGVLPVAFTKLAGGKISFSDDVIVHDVEPTHKVKLIFEFEDDVVTSLCKKSFGKSIIYTGDWEGLHEVLTSAMNVIGQHIKLPQFYIYDEEGGYDVSKPVMISQWPISNDSNGCVVEASTDFHQLECIVDDSVREEVDIIEQPFEEVEHVLSIKQPFSFSFRDELGVRVLDQSDNNCWISTTLVQLQLTKLLDDSIEMQLFKVGKVDSIVQKCYELSHLISGSLGDSGKLLSELLKEKYTCSITFEMSCDCGKKFDDQVGCLFWIMPYTKLFQKGECCICHKMQTYKLVSMKGTGVFVQDPAPIDIDAFPVKPICSSVYLGVKGSGHYQTNLYSFNKAIDGFGVFDIKNSSVNTVCFVDVDFHSVEIEAGEVKPFAVYKNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLECEKFNVFNVVGPRTGKHEHSLLVEAYNSILFENGIPLMPLLSCGIFGVRIENSLKALFSCDINKPLQVFVYSSNEEQAVLKFLDGLDLTPVIDDVDVVKPFRVEGNFSFFDCGVNALDGDIYLLFTNSILMLDKQGQLLDTKLNGILQQAALDYLATVKTVPAGNLVKLFVESCTIYMCVVPSINDLSFDKNLGRCVRKLNRLKTCVIANVPAIDVLKKLLSSLTLTVKFVVESNVMDVNDCFKNDNVVLKITEDGINVKDVVVESSKSLGKQLGVVSDGVDSFEGVLPINTDTVLSVAPEVDWVAFYGFEKAALFASLDVKPYGYPNDFVGGFRVLGTTDNNCWVNATCIILQYLKPTFKSKGLNVLWNKFVTGDVGPFVSFIYFITMSSKGQKGDAEEALSKLSEYLISDSIVTLEQYSTCDICKSTVVEVKSAIVCASVLKDGCDVGFCPHRHKLRSRVKFVNGRVVITNVGEPIISQPSKLLNGIAYTTFSGSFDNGHYVVYDAANNAVYDGARLFSSDLSTLAVTAIVVVGGCVTSNVPTIVSEKISVMDKLDTGAQKFFQFGDFVMNNIVLFLTWLLSMFSLLRTSIMKHDIKVIAKAPKRTGVILTRSFKYNIRSALFVIKQKWCVIVTLFKFLLLLYAIYALVFMIVQFSPFNSLLCGDIVSGYEKSTFNKDIYCGNSMVCKMCLFSYQEFNDLDHTSLVWKHIRDPILISLQPFVILVILLIFGNMYLRFGLLYFVAQFISTFGSFLGFHQKQWFLHFVPFDVLCNEFLATFIVCKIVLFVRHIIVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNANGGTCFCNKHNFFCVNCDSFGPGNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNGFYRLYSGDTFWRYDFDITESKYSCKEVLKNCNVLENFIVYNNSGSNITQIKNACVYFSQLLCEPIKLVNSELLSTLSVDFNGVLHKAYVDVLCNSFFKELTANMSMAECKATLGLTVSDDDFVSAVANAHRYDVLLSDLSFNNFFISYAKPEDKLSVYDIACCMRAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKYLVKTTKAKGLTFLLTFNDNQAITQVPATSIVAKQGAGFKRTYNFLWYVCLFVVALFIGVSFIDYTTTVTSFHGYDFKYIENGQLKVFEAPLHCVRNVFDNFNQWHEAKFGVVTTNSDKCPIVVGVSERINVVPGVPTNVYLVGKTLVFTLQAAFGNTGVCYDFDGVTTSDKCIFNSACTRLEGLGGDNVYCYNTDLIEGSKPYSTLQPNAYYKYDAKNYVRFPEILARGFGLRTIRTLATRYCRVGECRDSHKGVCFGFDKWYVNDGRVDDGYICGDGLIDLLVNVLSIFSSSFSVVAMSGHMLFNFLFAAFITFLCFLVTKFKRVFGDLSYGVFTVVCATLINNISYVVTQNLFFMLLYAILYFVFTRTVRYAWIWHIAYIVAYFLLIPWWLLTWFSFAAFLELLPNVFKLKISTQLFEGDKFIGTFESAAAGTFVLDMRSYERLINTISPEKLKNYAASYNKYKYYSGSASEADYRCACYAHLAKAMLDYAKDHNDMLYSPPTISYNSTLQSGLKKMAQPSGCVERCVVRVCYGSTVLNGVWLGDTVTCPRHVIAPSTTVLIDYDHAYSTMRLHNFSVSHNGVFLGVVGVTMHGSVLRIKVSQSNVHTPKHVFKTLKPGDSFNILACYEGIASGVFGVNLRTNFTIKGSFINGACGSPGYNVRNDGTVEFCYLHQIELGSGAHVGSDFTGSVYGNFDDQPSLQVESANLMLSDNVVAFLYAALLNGCRWWLCSTRVNVDGFNEWAMANGYTSVSSVECYSILAAKTGVSVEQLLASIQHLHEGFGGKNILGYSSLCDEFTLAEVVKQMYGVNLQSGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQSKLTDLKCTNVVLLGCLSSMNIAANSSEWAYCVDLHNKINLCDDPEKAQSMLLALLAFFLSKHSDFGLDGLIDSYFDNSSTLQSVASSFVSMPSYIAYENARQAYEDAIANGSSSQLIKQLKRAMNIAKSEFDHEISVQKKINRMAEQAATQMYKEARSVNRKSKVISAMHSLLFGMLRRLDMSSVETVLNLARDGVVPLSVIPATSASKLTIVSPDLESYSKIVCDGSVHYAGVVWTLNDVKDNDGRPVHVKEITKENVETLTWPLILNCERVVKLQNNEIMPGKLKQKPMKAEGDGGVLGDGNALYNTEGGKTFMYAYISNKADLKFVKWEYEGGCNTIELDSPCRFMVETPNGPQVKYLYFVKNLNTLRRGAVLGFIGATIRLQAGKQTELAVNSGLLTACAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVDANTNQDSYGGASICLYCRAHVPHPSMDGYCKFKGKCVQVPIGCLDPIRFCLENNVCNVCGCWLGHGCACDRTTIQSVDISYLNEQGVLVQLD", "sequence_length": 4060, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "268991e1f05e1d43ed1dae7dd5a7b66ba7e4d8586553dd07333d0a176aac949a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6U6.json", "taxon_id": "277944", "uniprot_accession": "P0C6U6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human coronavirus OC43", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/b-cov-a-nsp1-pf11963.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11963", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/b-cov-a-nsp1-pf11963.yaml" } ], "pfam_ids": [ "PF01661", "PF01831", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11963", "PF16251", "PF16348", "PF19213", "PF19217", "PF19218", "PF22104" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMVDCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRGCNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQSRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYALIRGYRGVKPLLYVDQYGCDYTGSLADGLEAYADKTLQEMKALFPTWSQELPFDVIVAWHVVRDPRYVMRLQSAATICSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILRQYNLFDIMSHFYMEADTVVNAFYGVALKDCGFVMQFGYIDCEQDSCDFKGWIPGNMIDGFACTTCGHVYEVGDLIAQSSGVLPVNPVLHTKSAAGYGGFGCKDSFTLYGQTVVYFGGCVYWSPARNIWIPILKSSVKSYDSLVYTGVLGCKAIVKETNLICKALYLDYVQHKCGNLHQRELLGVSDVWHKQLLINRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKLCHAVVSKSKELLDVSLDSLGAAIHYLNSKIVDLAQHFSDFGTSFVSKIVHFFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKNIPRYASAVAQAFQSVAKVVLDSLRVTFIDGLSCFKIGRRRICLSGRKIYEVERGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCGYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDDHVGLLDQAWRVPCAGRRVTFKEQPTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPEDDDFLEESDVEEDDVEGEETDLTITSAGQPCVASEQEESSEVLEDTLDDGPSVETSDSQVEEDVEMSDFVDLESVIQDYENVCFEFYTTEPEFVKVLGLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVLPQGGYVADFAYWFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHICKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRIVYKAACVVDVNDSHSMAVVDGKQIDDHRITSITSDKFDFIIGHGMSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLISAGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAARLSFNVGRSIVYETDANKLILINDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVLPEGWRVVNKFYQINGVRTVKYFECTGGIDICSQDKVFGYVQQGIFNKATVAQIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSLHLTFKIVQWQEAWLEFRSGRPARFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKCGVKQEQRTGLDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKLPKGVGSANIFIGDNVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTVCDSLNSKLGFDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYERGCITFGKPVIWLSHEKASLNSLTYFNRPLLVDDNKFDVLKVDDVDDSGDSSESGAKETKEINIIKLSGVKKPFKVEDSVIVNDDTSETKYVKSLSIVDVYDMWLTGCKYVVRTANALSRAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPAVNVVKAVRNKTSACFNFIKWLFVLLFGWIKISADNKVIYTTEIASKLTCKLVALAFKNAFLTFKWSMVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSFRLLVALANMLPAHVFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCSMRLFYDRDGQRIYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQIYKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKSDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFVLSLVCFIGLWCLMPTYTVHKSDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVIDQDFGSTVFNVPTKVLRYGYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFTMADGSPQPYCYTDGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRVVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSVVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYIAVVVSNHAFWVFSYCRKLGTSVRSDGTFEEMALTTFMITKDSYCKLKNSLSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMRGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPIQDYIQSVNFLAWLYAAILNNCNWFIQSDKCSVEDFNVWALSNGFSQVKSDLVIDALASMTGVSLETLLAAIKRLKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLFKGTVCWIMASTFLFSCIITAFVKWTMFMYVTTNMFSITFCALCVISLAMLLVKHKHLYLTMYITPVLFTLLYNNYLVVYKHTFRGYVYAWLSYYVPSVEYTYTDEVIYGMLLLVGMVFVTLRSINHDLFSFIMFVGRLISVFSLWYKGSNLEEEILLMLASLFGTYTWTTVLSMAVAKVIAKWVAVNVLYFTDIPQIKIVLLCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWHYCSTLHNEILATSDLSVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARFSGSANQQQLKQLEKACNIAKSAYERDRAVAKKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLNIIVPDKSVYDQIVDNIYVTYAGNVWQIQTIQDSDGTNKQLNEISDDCNWPLVIIANRYNEVSATVLQNNELMPAKLKIQVVNSGPDQTCNTPTQCYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVVLELDPPCKFTVQDAKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGIKDPVSYVLTHDVCRVCGFWRDGSCSCVSTDTTVQSKDTNFLNGFGVRV", "sequence_length": 4383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "77e1c894066637a2d10c47e433f4403665030e09765ecd3cbbe944d76807a6b3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6U7.json", "taxon_id": "31631", "uniprot_accession": "P0C6U7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Severe acute respiratory syndrome coronavirus", "origins": [ { "cited_uniprot_accession": "P0C6U8", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/hexachlorophene.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:5693", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/hexachlorophene.yaml" }, { "cited_uniprot_accession": "P0C6U8", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antifungal/bithionol.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:3131", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antifungal/bithionol.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF16251", "PF16348", "PF19211", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRNVLLRKNGNKGAGGHSYGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGGAVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIAWFTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGYLPTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKRAYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILASFSASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQAAGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMAYVTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDIVKGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQCIRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAIVGTPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGGAPIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKIVSTCFKLMLKATLLCVLAALVCYIVMPVHTLSIHDGYTNEIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQRGGSYKNDKSCPVVAAIITREIGFIVPGLPGTVLRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVLNNEHYRALSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFSTFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNALDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINRLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPLMQSADASTFLNGFAV", "sequence_length": 4382, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d710bcffd7faf91019592cf236162bcd7d2c892820a6b5c0a91632cc3d51225c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6U8.json", "taxon_id": "694009", "uniprot_accession": "P0C6U8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porcine transmissible gastroenteritis coronavirus (strain Purdue)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cnv-replicase-n-pf16688.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16688", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cnv-replicase-n-pf16688.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp2-n-pf19211.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19211", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp2-n-pf19211.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF16348", "PF16688", "PF19211", "PF19212", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSKQFKILVNEDYQVNVPSLPIRDVLQEIKYCYRNGFEGYVFVPEYCRDLVDCDRKDHYVIGVLGNGVSDLKPVLLTEPSVMLQGFIVRANCNGVLEDFDLKIARTGRGAIYVDQYMCGADGKPVIEGDFKDYFGDEDIIEFEGEEYHCAWTTVRDEKPLNQQTLFTIQEIQYNLDIPHKLPNCATRHVAPPVKKNSKIVLSEDYKKLYDIFGSPFMGNGDCLSKCFDTLHFIAATLRCPCGSESSGVGDWTGFKTACCGLSGKVKGVTLGDIKPGDAVVTSMSAGKGVKFFANCVLQYAGDVEGVSIWKVIKTFTVDETVCTPGFEGELNDFIKPESKSLVACSVKRAFITGDIDDAVHDCIITGKLDLSTNLFGNVGLLFKKTPWFVQKCGALFVDAWKVVEELCGSLTLTYKQIYEVVASLCTSAFTIVNYKPTFVVPDNRVKDLVDKCVKVLVKAFDVFTQIITIAGIEAKCFVLGAKYLLFNNALVKLVSVKILGKKQKGLECAFFATSLVGATVNVTPKRTETATISLNKVDDVVAPGEGYIVIVGDMAFYKSGEYYFMMSSPNFVLTNNVFKAVKVPSYDIVYDVDNDTKSKMIAKLGSSFEYDGDIDAAIVKVNELLIEFRQQSLCFRAFKDDKSIFVEAYFKKYKMPACLAKHIGLWNIIKKDSCKRGFLNLFNHLNELEDIKETNIQAIKNILCPDPLLDLDYGAIWYNCMPGCSDPSVLGSVQLLIGNGVKVVCDGCKGFANQLSKGYNKLCNAARNDIEIGGIPFSTFKTPTNTFIEMTDAIYSVIEQGKALSFRDADVPVVDNGTISTADWSEPILLEPAEYVKPKNNGNVIVIAGYTFYKDEDEHFYPYGFGKIVQRMYNKMGGGDKTVSFSEEVDVQEIAPVTRVKLEFEFDNEIVTGVLERAIGTRYKFTGTTWEEFEESISEELDAIFDTLANQGVELEGYFIYDTCGGFDIKNPDGIMISQYDINITADEKSEVSASSEEEEVESVEEDPENEIVEASEGAEGTSSQEEVETVEVADITSTEEDVDIVEVSAKDDPWAAAVDVQEAEQFNPSLPPFKTTNLNGKIILKQGDNNCWINACCYQLQAFDFFNNEAWEKFKKGDVMDFVNLCYAATTLARGHSGDAEYLLELMLNDYSTAKIVLAAKCGCGEKEIVLERAVFKLTPLKESFNYGVCGDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVKPVMHAVYTGTTQNGHYMVDDIEHGYCVDGMGIKPLKKRCYTSTLFINANVMTRAEKPKQEFKVEKVEQQPIVEENKSSIEKEEIQSPKNDDLILPFYKAGKLSFYQGALDVLINFLEPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFFENVIEHLSVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIFNVRLETSLQCLLKTVNDRGLNVFVYTDQERQTIENFFSCSIPVNVTEDNVNHERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVIKAIDIDWQAHYGFRDAAAFSASSHDAYKFEVVTHSNFIVHKQTDNNCWINAICLALQRLKPQWKFPGVRGLWNEFLERKTQGFVHMLYHISGVKKGEPGDAELMLHKLGDLMDNDCEIIVTHTTACDKCAKVEKFVGPVVAAPLAIHGTDETCVHGVSVNVKVTQIKGTVAITSLIGPIIGEVLEATGYICYSGSNRNGHYTYYDNRNGLVVDAEKAYHFNRDLLQVTTAIASNFVVKKPQAEERPKNCAFNKVAASPKIVQEQKLLAIESGANYALTEFGRYADMFFMAGDKILRLLLEVFKYLLVLFMCLRSTKMPKVKVKPPLAFKDFGAKVRTLNYMRQLNKPSVWRYAKLVLLLIAIYNFFYLFVSIPVVHKLTCNGAVQAYKNSSFIKSAVCGNSILCKACLASYDELADFQHLQVTWDFKSDPLWNRLVQLSYFAFLAVFGNNYVRCFLMYFVSQYLNLWLSYFGYVEYSWFLHVVNFESISAEFVIVVIVVKAVLALKHIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYRFYVGDEFTSYDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANVRNACVYFSQLIGKPIKIVNSDLLEDLSVDFKGALFNAKKNVIKNSFNVDVSECKNLDECYRACNLNVSFSTFEMAVNNAHRFGILITDRSFNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFNAVGSDDDLPYERFTESVSPKSGSGFFDVITQLKQIVILVFVFIFICGLCSVYSVATQSYIESAEGYDYMVIKNGIVQPFDDTISCVHNTYKGFGDWFKAKYGFIPTFGKSCPIVVGTVFDLENMRPIPDVPAYVSIVGRSLVFAINAAFGVTNMCYDHTGNAVSKDSYFDTCVFNTACTTLTGLGGTIVYCAKQGLVEGAKLYSDLMPDYYYEHASGNMVKLPAIIRGLGLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVYDNEFGNGYICGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDCTFLIVMIIVTLVVNNVSYFVTQNTFFMIIYAIVYYFITRKLAYPGILDAGFIIAYINMAPWYVITAYILVFLYDSLPSLFKLKVSTNLFEGDKFVGNFESAAMGTFVIDMRSYETIVNSTSIARIKSYANSFNKYKYYTGSMGEADYRMACYAHLGKALMDYSVNRTDMLYTPPTVSVNSTLQSGLRKMAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVIASDTTRVINYENEMSSVRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFTELSSTDAFSMLAAKTGQSVEKLLDSIVRLNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQAGKVKSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTTLISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNMVKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVIASYRIAYYIVVCVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQSKLTEMKCTNVVLLGLLSKMHVESNSKEWNYCVGLHNEINLCDDPEIVLEKLLALIAFFLSKHNTCDLSELIESYFENTTILQSVASAYAALPSWIALEKARADLEEAKKNDVSPQILKQLTKAFNIAKSDFEREASVQKKLDKMAEQAAASMYKEARAVDRKSKIVSAMHSLLFGMLKKLDMSSVNTIIDQARNGVLPLSIIPAASATRLVVITPSLEVFSKIRQENNVHYAGAIWTIVEVKDANGSHVHLKEVTAANELNLTWPLSITCERTTKLQNNEIMPGKLKERAVRASATLDGEAFGSGKALMASESGKSFMYAFIASDNNLKYVKWESNNDIIPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRLQAGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGVEANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTGTQDPIRFCIENEVCVVCGCWLNNGCMCDRTSMQSFTVDQSYLNECGVLVQLD", "sequence_length": 4017, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "329c8ac13f05893d5fa73dabcf6a3d41dce84777d8e8183302f6b2efdbc38572", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6V2.json", "taxon_id": "11151", "uniprot_accession": "P0C6V2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porcine epidemic diarrhea virus (strain CV777)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp2-c-pf19212.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19212", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp2-c-pf19212.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF16348", "PF19211", "PF19212", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASNHVTLAFANDAEISAFGFCTASEAVSYYSEAAASGFMQCRFVSLDLADTVEGLLPEDYVMVVIGTTKLSAYVDTFGSRPRNICGWLLFSNCNYFLEELELTFGRRGGNIVPVDQYMCGADGKPVLQESEWEYTDFFADSEDGQLNIAGITYVKAWIVERSDVSYASQNLTSIKSITYCSTYEHTFLDGTAMKVARTPKIKKNVVLSEPLATIYREIGSPFVDNGSDARSIIRRPVFLHAFVKCKCGSYHWTVGDWTSYVSTCCGFKCKPVLVASCSAMPGSVVVTRAGAGTGVKYYNNMFLRHVADIDGLAFWRILKVQSKDDLACSGKFLEHHEEGFTDPCYFLNDSSLATKLKFDILSGKFSDEVKQAIIAGHVVVGSALVDIVDDALGQPWFIRKLGDLASAPWEQLKAVVRGLGLLSDEVVLFGKRLSCATLSIVNGVFEFLADVPEKLAAAVTVFVNFLNEFFESACDCLKVGGKTFNKVGSYVLFDNALVKLVKAKARGPRQAGICEVRYTSLVVGSTTKVVSKRVENANVNLVVVDEDVTLNTTGRTVVVDGLAFFESDGFYRHLADADVVIEHPVYKSACELKPVFECDPIPDFPLPVAASVAELCVQTDLLLKNYNTPYKTYSCVVRGDKCCITCTLQFKAPSYVEDAVNFVDLCTKNIGTAGFHEFYITAHEQQDLQGFLTTCCTMSGFECFMPTIPQCPAVLEEIDGGSIWRSFITGLNTMWDFCKRLKVSFGLDGIVVTVARKFKRLGALLAEMYNTYLSTVVENLVLAGVSFKYYATSVPKIVLGGCFHSVKSVFASVFQIPVQAGIEKFKVFLNCVHPVVPRVIETSFVELEETTFKPPALNGGIAIVDGFAFYYDGTLYYPTDGNSVVPICFKKKGGGDVKFSDEVSVKTIDPVYKVSLEFEFESETIMAVLNKAVGNRIKVTGGWDDVVEYINVAIEVLKDHVEVPKYYIYDEEGGTDPNLPVMVSQWPLNDDTISQDLLDVEVVTDAPIDSEGDEVDSSAPEKVADVANSEPGDDGLPVAPETNVESEVEEVAATLSFIKDTPSTVTKDPFAFDFVSYGGLKVLRQSHNNCWVTSTLVQLQLLGIVDDPAMELFSAGRVGPMVRKCYESQKAILGSLGDVSACLESLTKDLHTLKITCSVVCGCGTGERIYEGCAFRMTPTLEPFPYGACAQCAQVLMHTFKSIVGTGIFCRDTTALSLDSLVVKPLCAAAFIGKDSGHYVTNFYDAAMAIDGYGRHQIKYDTLNTICVKDVNWTAPLVPAVDSVVEPVVKPFYSYKNVDFYQGDFSDLVKLPCDFVVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEALGLKVFNVVGPRKGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEESLSAFLACVGDRHCKCFCYGDKEREAIIKYMDGLVDAIFKEALVDTTPVQEDVQQVSQKPVLPNFEPFRIEGAHAFYECNPEGLMSLGADKLVLFTNSNLDFCSVGKCLNDVTSGALLEAINVFKKSNKTVPAGNCVTLDCANMISITMVVLPFDGDANYDKNYARAVVKVSKLKGKLVLAVDDATLYSKLSHLSVLGFVSTPDDVERFYANKSVVIKVTEDTRSVKAVKVESTATYGQQIGPCLVNDTVVTDNKPVVADVVAKVVPNANWDSHYGFDKAGEFHMLDHTGFTFPSEVVNGRRVIKTTDNNCWVNVTCLQLQFARFRFKSAGLQAMWESYCTGDVAMFVHWLYWLTGVDKGQPSDSENALNMLSKYIVPAGSVTIERVTHDGCCCSKRVVTAPVVNASVLKLGVEDGLCPHGLNYIGKVVVVKGTTIVVNVGKPVVAPSHLFLKGVSYTTFLDNGNGVVGHYTVFDHGTGMVHDGDAFVPGDLNVSPVTNVVVSEQTAVVIKDPVKKAELDATKLLDTMNYASERFFSFGDFMSRNLITVFLYILSILGLCFRAFRKRDVKVLAGVPQRTGIILRKSMRYNAKALGVFFKLKLYWFKVLGKFSLGIYALYALLFMTIRFTPIGSPVCDDVVAGYANSSFDKNEYCNSVICKVCLYGYQELSDFSHTQVVWQHLRDPLIGNVMPFFYLAFLAIFGGVYVKAITLYFIFQYLNSLGVFLGLQQSIWFLQLVPFDVFGDEIVVFFIVTRVLMFIKHVCLGCDKASCVACSKSARLKRVPVQTIFQGTSKSFYVHANGGSKFCKKHNFFCLNCDSYGPGCTFINDVIATEVGNVVKLNVQPTGPATILIDKVEFSNGFYYLYSGDTFWKYNFDITDSKYTCKEALKNCSIITDFIVFNNNGSNVNQVKNACVYFSQMLCKPVKLVDSALLASLSVDFGASLHSAFVSVLSNSFGKDLSSCNDMQDCKSTLGFDDVPLDTFNAAVAEAHRYDVLLTDMSFNNFTTSYAKPEEKFPVHDIATCMRVGAKIVNHNVLVKDSIPVVWLVRDFIALSEETRKYIIRTTKVKGITFMLTFNDCRMHTTIPTVCIANKKGAGLPSFSKVKKFFWFLCLFIVAAFFALSFLDFSTQVSSDSDYDFKYIESGQLKTFDNPLSCVHNVFINFDQWHDAKFGFTPVNNPSCPIVVGVSDEARTVPGIPAGVYLAGKTLVFAINTIFGTSGLCFDASGVADKGACIFNSACTTLSGLGGTAVYCYKNGLVEGAKLYSELAPHSYYKMVDGNAVSLPEIISRGFGIRTIRTKAMTYCRVGQCVQSAEGVCFGADRFFVYNAESGSDFVCGTGLFTLLMNVISVFSKTVPVTVLSGQILFNCIIAFVAVAVCFLFTKFKRMFGDMSVGVFTVGACTLLNNVSYIVTQNTLGMLGYATLYFLCTKGVRYMWIWHLGFLISYILIAPWWVLMVYAFSAIFEFMPNLFKLKVSTQLFEGDKFVGSFENAAAGTFVLDMHAYERLANSISTEKLRQYASTYNKYKYYSGSASEADYRLACFAHLAKAMMDYASNHNDTLYTPPTVSYNSTLQAGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDIVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVSATMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGHTSLTDEFTTGEVVRQMYGVNLQGGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPASSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKVAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQSKLTDIKCSNVVLLGCLSSMNVSANSTEWAYCVDLHNKINLCNDPEKAQEMLLALLAFFLSKNSAFGLDDLLESYFNDNSMLQSVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQNNEIIPGKLKQRSIKAEGDGIVGEGKALYNNEGGRTFMYAFISDKPDLRVVKWEFDGGCNTIELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRGAVLGYIGATVRLQAGKQTEQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVGNCVKMLANGSGNGQAVTNGVEASTNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQVPLGTVDPIRFVLENDVCKVCGCWLSNGCTCDRSIMQSTDMAYLNEYGALVQLD", "sequence_length": 4117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "796af9bb2f7b6d9e5da90750899dd9ebd7109b53bf73f1452b5c6d44a4bd3003", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6V6.json", "taxon_id": "229032", "uniprot_accession": "P0C6V6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Berne virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aaa-19-pf13245.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13245", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aaa-19-pf13245.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp15-c-pf19215.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19215", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp15-c-pf19215.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/corona-ns2a-pf05213.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/corona-ns2a-pf05213.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF05213", "PF13245", "PF19215" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTSSSILDIPSKMFRILKNNTRETEQHLSSSTLDLISKSQLLAQCFDTQEIMASLSKTVRSILESQNLEHKSTLTPYNSSQSLQLLVMNTSCTQFKWTTGSTSSVKALLEKELCRGLVPLNDITPKSNYVELSLLTPSILIGNETSTTTTLPEIPLDMEQSIISCVENTLLKEVQALSGQESCQEYFLSANYQSLIPPQVLLNLMKMSSVVDLSPLTLPNTRLWLKLSPFHGGTSVSYATQIKGYANCARREEKCLKNRLTKKQKNQEKGSFDARSVITLGGKMYRYKVVVLRCEDQSDNLSELQFEPQVEYTMDMVPHCWKELVKKRLIRAKGTWDLSCVEDLDLDHVEVRGDSLLHRSSVVHDLTSIVDDTLQEKLFSRTWLRQSLKYSGNILQRLSSLFATEGLKKITLVNSDITPVQVGDKWLNFVDFGKSTVFFVKTLNNIHLAMTRQRESCNYIHEKFGRVRWLGAKPEQGAIVKVFAWCLNKKEFKFRDNQLKQYVCRQGVIKHEPCEYLNVEVLDEFVALNNDLNCVQKIKTYLAAYFGLKKVKLTQKNFMTPLITKKQELVFQPCNCPNHQFYVAQFDKHVTLGLGRKDGILFAEQVPSYAIILAVGFGTVETQLVTHYYSEMRRVYHPLDFQSNTFVFDHQGVMLEDISPADYNDVGEEDYQLEYSGGFDQPFQNYHSDDEDQAFPDFEDERHPDEENWARPIISSGESSVVSSRPSSPLVYSSLVPVASPFGYMNGIRVFDICLADDLDFLQIHGQCPCARCKGLYFYQPIRPRGFTIFENVVEFFSFVEKCEVFEEIGPFFKMIEYSMLYNEYNIFYGLGKKIYQSDLVLPVKHLDQLWKRAQLDIDVVSEFENFKNSLQNINNVVYIAPYFNDQGEWNDIFDGYEFNLNDNQFWFQAKPVYDLVCYIYQGFFSDSRPLEKLYQKLCLDYHTSAMLHTQTHLKYCYVALLHSERAFQMSINLDSLDNEQLHFLATMGMGDASLVGPTYLSEYHSNFNWYSIMSKACHYVKLEQLVGLTYQEKRLMILSRVQEFYEQQHRGPIQLILSPLKVVNLPPITCTEGYCYQPVTRLFDTCVMPDIMKKLSRKRTSVSDVFGILADYFKRTLSYRCFKVHEFCGIERQQEFSDMTTLKLVTDWCQDTYYFYNEYATMTDVEPKVQVSSDYYLKIPSEVVEHIRQFLPHNVNVGLMNYVSSNCDFDQCKFEFCLSGKGYVLGNMFFNRCAIQYVKTNLFIVLFKSRPLLYITQESIYLSDFNVLQAQCLTGEFCLDFEPVQGKTLFGVYFTNGQRYGQQWETLPRFSLKPLNSPRKRVPTQPFEELAEVCIFKQKLKLTQLHNDCSVTPRVCSIPQTITATFQPYYCLENFYGVKAPKVIVSGHLATHYVKLTHKISKCVLVTKLAVARAFYFTPTSMGSHYHLDPMEGISFGKRATVQFEPVGLIKDVNLLVYQFGSHVSIQFFPEAPCIVADGHYPSKYSGVWLGYLPSVEECKIAQVNHRVYVPTILRTSKSAPFHIIQNGDMGRGPITVTYHYAKNFDNKSLTPMFKMFQQVFEKSKDDIFKAFNTMSLEQKKVLSHFCGEFDEAYTLQTMSDEISFESSAYPDVVACSLAYILGYEMCLTVKVNAKNEKLDIGSQCERVFVDYDVKKNEWTLSPEEGEDSDDNLDLPFEQYYEFKIGQTNVVLVQDDFKSVFEFLKSEQGVDYVVNPANSQLKHGGGIAKVISCMCGPKLQAWSNNYITKNKTVPVTKAIKSPGFQLGKKVNIIHAVGPRVSDGDVFQKLDQAWRSVFDLCEDQHTILTSMLSTGIFGCTVNDSFNTFLSNVARLDKSLVVFVVTNMVEQYNQAFAVIKMYQQYHGLPNFGNTCWFNALYQLLKSFSEKEQCVNDLLNCFDDFYDCPTSQCVEWVCEQLGVQFGQQQDAVEMLMKVFDVFKCDVRVGFDCLSRLQQVNCGFCVEVPAQAVLMFSGKDQCGHWTAARKIVDKWYTFDDNHVVQKDPVWQNVVLVLRDRGIFRSADFERKPARRRRVSHRVPRDTLSQDAITYIEDLRFSSGTCLSRYFVESVESFVSGDNVSEVSDEQTCVEVAIEESDGHVEQICQSSVDCVGMPESFQFTFSMPLQTFVQECDQKCEDDFSQEHVECDQQFEPVEQVGQGGQQDGQVDQQIKESEQVVEPSAPSGQESPQALLQQVVDEVVYQIEQVKCDQKQDQDSVQCDEIEEINSRGEQTVQQQLQPILGHDLNENEGPTLSVGAGKLVRCRSLAVTESNLSTSNTIFVWSEVLTHQYIGFKTDLMGLTYNIKFKLICYVLFLWFGVLCCTSHNTPFYMRLCIYLVLLWLSLMIWNASQINVKTGWNELYVLKLLTSIKLPNIVKFRCELVQWFVLKCLFVSFYVYDYVVKVCVSIFQMPQLRPFTWPFIKLGFVDTFLSHHILAFPEKVANQSTLPTCGDKRYYVYVPSWCRASFTSLVMRARELTSTGRSKTLDNWHYQCCSKTAKPLSCFNVREFVFDQDCKHEAYGFLSSLCVYLLFYSGFLTFWLPLFCYYYVLFMCTFKNLPVDITKPIKWTVLQQVVNDVLSLVTKPLFGRPVCPPLTTYLTSTTADEAVKVSRSLLGRFCTPLGFQQPVMNVENGVTVSNFGFFNPLMWPLFVVVLLDNRFIWFFNVLSYVMMPVFVIILFYFYLKKICGCINFKGLSKCCTKHFNQFSKPLVAAGVHGNRTNFTYQPMQEHWCDRHSWYCPKEEHYMTPDMAVYIKNYYNLACAPTADLVWCDYTKSAPTMTWSNFKYSSYKAKETVLCAPSSHADSMLMAWYALLHNVRFTVNPNVVDLPPAVNTIYVSSDSEDSVQDKSQPDVKLRPKKPKGNFKKQSVAYFSREPVDIWYYTTLVIVMGVLFMFMYSCLMVGQYVVMPRDKFFGVNPTGYSYVNAPPYLHAAPPVLQNSDGMILATQLKVPSITYSVYRLLSGHLYFTKLIVSDNECTPPFGAARLSNEFSCNGFTYVLPAHLRFFNRYVMLIHPDQLHMLPFEVEYGSHTRVCYTTGSNSVECLPTFEIISPYVFVFIVVIFTVIFLILIRLYIVMYSYFKVFTYVVFKLLFVNIIMVLFVVCLPPLVPGVVFVLALWLCDSVMFLLYLAFLSLFILPWFYVLFFLFMVGGFVFWWMMRSADVVHLTTDGLTFNGTFEQISKCVFPLNPLIVNRMLLDCQMSHSDLVEKSKLKTTEGKLANEMMKVFMTGETSYYQPSNFSFQSVFSKATSPFTLHARPPMPMFKLYVHFTGSCVGSTSTGTGFAIDDNTIVTAKHLFEYDDLKPTHVSVEIVTRSHSARSASIIWKEPDVKGWTFKGENAYIQVENLKDFYIEDFKYLPFQQIEKDFYKRMEPVTIYSVKYGSEFATQAWQTVNGHFVCYNTEGGDSGAPLVCNGRIVGVHQGLCDNFKTTLASDFEGKMMTEVKGHHVDPPVYYKPIIISAAYNKFVAGEDSSVGDGKNYHKFENEDFACMCKELESVTFGDQLRRYCYNLPQFLEPLQYFHVPSFWQPFKKQSVSNNVSWVVEHLHFIFSIYFLICDFVAYWWLDDPFSVVLPLFFIVQLLSTVFLKNVLFWTTSYLITLAVTFYIHSEVAESMFLLGFLSDRVVNRMSLIIVVAIMCLFVVVRVVVNVKRAIFVFVVSVVLIFVHICLGIVQFNSFVNVVLFDVYAVFTALLTPQPVVAIIMLLLFDTKMLMSFAFIVIVLSFRVFKDYKFVKVLHNFCNFDFVLSQVSLFRYRHRNQGNDPTHYEALWLFLKELYYGIQDAKYEVFSPQAGSYNVKFLTDMTEQDQLEAVEQVQRRLQRFNIVQDKASPRLVLYSKTIEFIKDQIQQQRAVGANPFIITTLTSNDIGLDNVEVHNPANFKPEDLQAHMWFFSKSPVFIGQVPIPTNVQTAAVLDTTYNCQDLTADEKNNVAATLQIQNAAITLSLFEKCTQFLESELGEVPTLMWQAEDVADIKHLESQIENLRKVLDGMQFGTTEYKATRKQLNICQSQLDQAKAFERKLAKFLEKVDQQQAITNETAKQLSAFKNLVKQVYESYMSSLKVKVLEANDASCLLTSTDLPRKLVLMRPITGVDGIKIVEKANGCEITAFGTTFNTGHGSNLAGLAYSTTQPLSAYPFIFNLEGIFKQQANIGYKTVECNMSSHNGSVLYKGKVVAVPSDDNPDFVVCGKGYKLDCGINVLMIPSIVRYITLNLTDHLQKQSLKPRRRLQYRQQGVRLGGVNLGEHQAFSNELISTVGYTTWVSSTVCRDNTHKHPWFVQIPVNEKDPEWFMHNTQLKDNQWVVDLKPTHWLVNADTGEQLFALSLTDEQALKAEAILQKWSPITQDVECWFKDLKGYYTVSGFQPLWPVCPVNICNVRLDPVFKPQSIVYADDPTHFLSLPVVNKNFLAAFYDLQEGFPGKKQVAPHISLTMLKLSDEDIEKVEDILDEMVLPNSWVTITNPHMMGKHYVCDVEGLDSLHDEVVSVLREHGIACDQKRLWKPHLTIGELNDVSFDKFKDFAISCKLEDCDFVKLGAPKANARYEFITTLPLGDFKLLRGAWSACRHLCFQNGAYQSSRSKHYIDLATEYNAGIVKVNKSNTHSVEYQSKRFMIKRVKDQSEFALAKTAFLPSIIPHHMEKQNGEWFLIRGPTSQWSLGDLVYAIWLGDQDYLSECGFVFNPSRDEFLDDANQRSFLANLLEPAILNFSHIYWQVKMCKVPYKLTLDNVDLNGQLYDFGDYPCPNSVDNQSALFVLAEVWSMTRRPFPVAFARLLANEMEIPTDYQMFFQNILLSGSYLDKALCLNNVRPFLSDPANLTTTPFFSQHNGVWTHFYNPIYGLVECNLDEFAELPEVLQQLVTVQGPITNNMTPAISVGEGVYAANVPSASATKQKIPFYDVGLCQELTDAGVDCGEAFKYFYYLSNPAGALADVCYYDYQGTGFYSPKLLAGVYDFMKRVTECYRINERFTYEQAKPRKSSMGINITGYQQDAVYRALGPENIARLFEYAQKAPLPFCTKIITKFALSAKARARTVSSCSFIASTIFRFAHKPVTSKMVEVAQNSGGFCLIGVSKYGLKFSKFLKDKYGAIEGFDVFGSDYTKCDRTFPLSFRALTAALLYELGEWDEKSWLYLNEVNSYMLDTMLCDGMLLNKPGGTSSGDATTAHSNTFYNYMVHYVVAFKTILSDLSEGNKVMRIAAHNAYTTGDYQVFNTLLEDQFQTNYFLNFLSDDSFIFSKPEALKIFTCENFSNKLQTILHTKVDQTKSWSTKGHIEEFCSAHIIKTDGEYHFLPSRGRLLASLLILDKLSDVDIYYMRFVAILCESAVYSRYQPEFFNGLFQVFLDKVQQFRKDYCCDPCPPQLLEREFYENLVFTSNSEVGIVDCYLENFKLQCEFKQQANFDKVCFCCPNPAVSVCEECYVPLPLCAYCYYVHVVISNHSKVEDKFKCFCGQDNIRELYIVLNNSICMYQCKNCVESDRLRISLLSDVDQIVRLPGFKSNSASIAKNGVAQLLTSVDNVDVSLDWNYQESVQQNVARIVYHSANMTQMSIEVVYVSFTLVRNDGSSAILDIPNFKCPDTSYCLFYKPGKSGVLKFTGKGTLTSCYDNKNLTWFKVTCPDFNQPWRLATCFVIQQHDVVYPPIKATQYENVTFVMGPPGTGKTTFVYDTYLSKASSSNRFVYCAPTHRLVGDMDEKVDGAVVVSAYNDRTYRNPVWNKDDSYGVLLCTHNTLPFIKSAVLIADEVSLIPPHVMIKILSMGFKKVVLLGDPFQLSPVYKNHKVHFKYDTFYLLQLATQKRYLTACYRCPPQILSAFSKPYCDVGVDLVSFNNKPGKFDIIVSKQLANIQDFSVLSVLSKEYPGYVILVNYRAAVDYAMQNGLGDVTTIDSSQGTTAANHLLVLFGASNFSKTVNRVIVGCSRSTTHLVVVCCPELFKHFQPILNWPEPKYRYFGMEKQSDFNIIPEVSSLVFCDIEFWHYKADPNSKTRTVYPGQIAVVTSQTLQLYLGVFDDTGYKSALRGLPKDVYVPPNWVWMRKHYPSYEQHAYNMQRLFKFIIDTTFGQPWFILYSCSNDLKSLKFYVEFDTCYFCSCGEMAICLMRDGNYKCRNCYGGMLISKLVNCKYLDVQKERVKLQDAHDAICQQFHGDSHEALCDAVMTKCLYLASYEAAFKDTIHVKYKDLCLEIQYKITSSFVRYDSVHKRYLYRDHGAMYYFRTPRSPMQNVYKYEVGSHAEYSINICTSYEGCQSFGKTCTKCIHIHCIVEQFMADERFKEFILVSVVKSDYVEQALSPAAKALMLTVTKVEDKSFYISNGVRYDLYDYDLSKSVMRVVNSNVKPLPLYSVIVGLGINCTVGCVLPNVPMKLKDELLITDVPLSTLRLDLQTWYYISWPTLSNKNSRWKLAGAQVYDCSVHIYIEATGEQPLYYLQQGKGESLFELPDTLFSTGRLYNLDHDAAQNFNVKQLAIETMPNNHHVFSGDFTEVGTDIGGVHHVVALNGYKGSIIPNYVKPIATGLINVGRAVKRTTLVDVCANQLYEKVKQQLEGVKVSKVIFVNIDFQDVQFMVFANGEDDIQTFYPQKDFVRSYYEWPNILPQIESHYDLKNYGQNPTFMPQPVNFAKYTQICTFIQDHVKVARNALVWHLGAAGVDGCSPGDIVLSSFFKECLVYSWDIKDYSTLLDKHSYDCNFRPNLIVSDIYNVSSNVSEVLDDCVHRLALGGTIVFKTTESSRPDIQLSQFTKYFSAVQFFTAGVNTSSSEVFVVLKYKLYSEPIGEELCSPNILSRIAAYRNKLCIVPNFKVFSTSFSYKYSGVKFVQKCFYVSVPRQFCASGLIQEVPMLCQMEH", "sequence_length": 6857, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "275d5f571af90ac016a2870f3d74d5edcf5d88ca1cb5a713543727795156dcd7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6V7.json", "taxon_id": "11156", "uniprot_accession": "P0C6V7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus 279/2005", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-sud-c-pf12124.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12124", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-sud-c-pf12124.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-sud-m-pf11633.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11633", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-sud-m-pf11633.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp1-pf11501.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11501", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp1-pf11501.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF13087", "PF16251", "PF16348", "PF19211", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLALGVSEKTHVQLSLPVLQVRDVLVRGFGDSVEEALAEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDAQGTNHGYKVVELVAELDGIQYGRSGTTLGVLVPHVGETPVAYRNVLLRKNGNKGAGGHSYGIDLKSYDLGVELGTDPIEDYEQNWNTKHGGGVLRELIRELNGGAFTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVWFTERSEKSYERQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYLPANAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFAYVGCYNKRAYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASFSASTCAFVDTVKGLDYKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSILTPLYGFPSQAAGVIRSIFTRALDTANHSIPDLQRAAITILDGISEQSLRLIDAMVYTSDLLTNSVIVMAYVTGGLVQQITQWLSNMLGTTVDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLVTGVFDIVKGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGAKLRTLNLGEVFIAQSKGLYRQCIRGKEQLQLLMPLRAPKEVTFFEGDSHDTVFTSEEVVLKNGELEALETPVDSFTNGAVIGTPVCVNGLMLLELKDKEQYCALSPGLLATNNVFSLKGGAPVKGVTFGEDTVLEVQGYKNVKITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYEDEEEIPEETCEHEYGTEDDYKGLPLEFGASTEIQQVDEEEEEDWLEEAIAAKPEPEPLPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKATNGAMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYANFNSQDVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYFAVNDQDLYDHVVLGYLDSLKPKVETPTQENLELKEQPAVETLTQENLELEELPVIEKPVDVKFKARIEEVNTSLEETKFLTSRLLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVGDVISSGDITCVIIPAKKAGGTTEMLAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRKCKSVFYVLPSKTPNDKEEILGTVSWNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFLKRGDKVVYHTVGSPIQFHLDGEVLLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPHAKHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRETMTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICGRDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRIDGAYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEVEDTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQAAVTTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAAFGVLLSNLGIPSYCDGVRESYVNSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNAITTKISLKGGKIVSTWFKLMLKATLLCVLAALFCYIIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIMATDDCFANKHAGFDSWFSQRGGSYRNDKSCPVVAAIITREIGFIVPGLPGTVLRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEAGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFSTFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLVLMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSQNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVCTVCGTWKGYGCSCDQLREPMMQSADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNERVAGFAKFLKTNCCRFQEKDEEGNLLDSYFVVKRHTMSNYQHEETIYNLVKECPAVAVHDFFKFRVDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILTLTKALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDVLFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFKAVHYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQAVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKLHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKEKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEVPRRNVATLQAENVTGLFKDCSKIITGLHPTQAPTHLSVDTKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATRDAVGTNLPLQLGFSTGVNLVAVPTGYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVVFVLWAHGFELTSMKYFVKIGPERTCCLCDRRATCFSTSSDTYACWNHSVGFDYVYNPFMIDVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIGDELKINAACRKVQHMVVKSALLADKFSVLHDIGNPKAIKCVPQAEVDWKFYDAQPCSDKAYKIEELFYSYATHHDKFTDGVCLFWNCNVDRYPANAIVCRFDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFTYLKQLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRRHANEYRQYLDAYNMMISAGFSLWIYKQFDTYNLWNTFTRLQSLENVAYNVVNKGHFDGQIGEAPVSIINNAVYTKVDGNDVEIFENKTTLPVNVAFELWAKRNIKPVPEIKILNNLGVDIAANTVIWDYKREAPAHVSTIGVCTMTDIAKKPTESACSSLTVLFDGRVEGQVDLFRNARNGVLITEGSVKGLTPSKGPAQASVNGVTLIGESVKTQFNYFKKVDGIIQQLPETYFTQSRDLEDFKPRSKMETDFLELAMDEFIQRYKLEGYAFEHIVYGDFSHGQLGGLHLMIGLAKRSQDSPLKLEDFIPTDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIKSQDLSVISKVVKVTIDYAEISFMLWCKDGHVETFYPKLQASQAWQPGVAMPNLYKMQRMLLEKCDLQNYGENAVIPKGIMMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGALLVDSDLNDFVSDADSTLIGDCATVHTANKWDLIISDMYDPKTKHVTKENDSKEGFFTYLCGFIKQKLALGGSVAVKITEHSWNADLYKLMGHFSWWTAFVTNVNASSSEAFLIGVNYLGKLREQIDGYTMHANYIFWRNTNPIQLSSYSLFDMSKFPLKLRGTAVMSLKENQINDMIYSLLENGRLIIRENNRVVVSSDILVNN", "sequence_length": 7079, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f861a9431459f19e16b58422ba9f30064821d886f9e79069f0d8ae564804314e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6V9.json", "taxon_id": "389167", "uniprot_accession": "P0C6V9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus HKU4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-sud-m-pf11633.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11633", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-sud-m-pf11633.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp1-pf11501.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11501", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp1-pf11501.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF13087", "PF13604", "PF16251", "PF16348", "PF19211", "PF19212", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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SMAATRGATCVIGTTKFYGGWDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDREIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGHMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQAVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCDVSDVTKLYLGGMSYYCNDHRPVCSFPLCANGLVFGLYKNMCTGSSSIMEFNRLATCDWSDSGDYTLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERELILVWEVGKSKPPLNRNYVFTGYHLTKNSKVQLGEYVFERIDYSDAVSYKSSTTYKLAVGDIFVLTSHSVATLSAPTIVNQERYLKITGIYPTITVPEEFANHVVNFQKAGFSKYVTVQGPPGTGKSHFAIGLAIYYPTARIVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDRFKVNDTNSQYLFSTVNALPEISVDILVVDEVSMCTNYDLSIINSRVKAKHIVYVGDPAQLPAPRTLLIRGTLEPENFNSVTRLMCNLGPDIFLSVCYRCPKEIVSTVSALVYNNKLSAKKDASGQCFKILFKGSVTHDASSAINRPQLNFVKTFIAANPNWSKAVFISPYNSQNAVARSMLGLTTQTVDSSQGSEYPYVIFCQTADTAHANNLNRFNVAVTRAQKGILCVMTSQVLFDSLEFAELSLNNYKLQSQIVTGLFKDCSREDTGLPPAYAPTYLSVDAKYKTTDELCVNLNITPNVTYSRVISRMGFKLDATIPGYPKLFITRDEAIRQVRSWVGFDVEGAHASRNACGTNVPLQLGFSTGVNFVVQPVGVVDTEWGSMLTTISARPPPGEQFKHLVPLMNKGATWPIVRRRIVQMLSDTLDKLSDYCTFVCWAHGFELTSASYFCKIGKEQRCSMCSRRASTFSSPLQSYACWSHSSGYDYVYNPFFVDVQQWGYVGNLATNHDRYCGIHAGAHVASSDAIMTRCLAIYDCFIERVDWDVTYPYISHEQKLNSCCRTVERNVVRSAVLSGKFEKIYDIGNPKGIAIISEPVEWHFYDAQPLSNKVKKLFYTDDVSKQFEDGLCLFWNCNVSKYPSNAVVCRFDTRVHSEFNLPGCNGGSLYVNKHAFHTPAYDINAFRDLKPLPFFYYSTTPCEVHGSGNMLEDIDYVPLKSAVCITACNLGGAVCRKHAAEYRDYMEAYNIVSAAGFRLWVYKTFDIYNLWSTFVKVQGLENIAFNVIKQGHFTGVDGELPVAVVNDKIFTKNGTDDVCIFKNETALPTNVAFELYAKRAVRSHPDLNLLRNLEVDVCYNFVLWDYDRNNIYGTTTIGVCKYTDIDVNPNLNMCFDIRDKGSLERFMSMPNGVLISDRKIKNYPCISGPKHAYFNGAILRNIDAKQPVIFYLYKKVNNEFVSFSDTFYTCGRTVGDFTVLTPMEEDFLVLDSDVFIKKYGLEDYAFEHVVYGDFSHTTLGGLHLLIGLYKKMREGHILMEEMLKDRATVHNYFITDSNTASYKAVCSVIDLRLDDFVTIIKEMDLDVVSKVVKVPIDLTMIEFMLWCRDGKVQTFYPRLQATNDWKPGLTMPSLFKVQQMNLEPCLLANYKQSIPMPNGVHMNVAKYMQLCQYLNTCTLAVPANMRVIHFGAGCEKGVAPGTSVLRQWLPLDAVLIDNDLNEFVSDADITIFGDCVTVHVGQQVDLLISDMYDPCTKAVGEVNQTKALFFVYLCNFIKNNLALGGSVAIKITEHSWSADLYKIMGRFAYWTVFCTNANASSSEGFLIGINFLGELKEEIDGNVMHANYIFWRNSTPMNLSTYSLFDLSRFPLKLKGTPVLQLKESQINELVISLLSQGKLLIRDNDTLNVSTDVLVNFRKRL", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp15-c-pf19215.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp15-m-pf19216.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19216", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp15-m-pf19216.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp15-n-pf19219.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19219", "section": 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"Pfam:PF11963", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/b-cov-a-nsp1-pf11963.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-exon-pf06471.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06471", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-exon-pf06471.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF01831", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11963", "PF13087", "PF13604", "PF16251", "PF16348", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633", "PF22104" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKIDCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPLHSLGGFPKGYVMGLFRSYKTKRYVVHHLSMTTSTTNFGEDFLGWIVPFGFMPSYVHKWFQFCRLYIEESDLIISNFKFDDYDFSVEDAYAEVHAEPKGKYSQKAYALLRQYRGIKPVLFVDQYGCDYSGKLADCLQAYGHYSLQDMRQKQSVWLANCDFDIVVAWHVVRDSRFVMRLQTIATICGIKYVAQPTEDVVDGAVVIREPVHLLSADAIVLKLPSLMKVMTHMDDFSIKSIYNVDLCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSSEVKAQSSGVIPENPVLFTNSTDTVNPDSFNLYGYSVTPFGSCIYWSPRPGLWIPIIKSSVKSYDDLVYSGVVGCKSIVKETALITHALYLDYVQCKCGNLEQNHILGVNNSWCRQLLLNRGDYNMLLKNIDLFVKRRADFACKFAVCGDGFVPFLLDGLIPRSYYLIQSGIFFTSLMSQFSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDASAPATGWLLYQLLNGLFVVSQANFNFVALIPDYAKILVNKFYTFFKLLLECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLIPGFVLPCNAQEQQIYFFEGVAESVIVEDDVIENVKSSLSSYEYCQPPKSVEKICIIDNMYMGKCGDKFFPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEEIVTGDNDDQIVVTGDDVDDIESVYDFDTYKALLVFNDVYNDALFVSYGSSVETETYFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIPKAIVLPQGGYVADFAYWFLNQFDINAYANWCCLKCGFSFDLNGLDAVFFYGDIVSHVCKCGHNMTLIAADLPCTLHFSLFDDNFCAFCTPKKIFIAACAVDVNVCHSVAVIGDEQIDGKFVTKFSGDKFDFIVGYGMSFSMSSFELAQLYGLCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTKALAVRLTANVGRVIKFETDAYKLFLSGDDCFVSNSSVIQEVLLLRHDIQLNNDVRDYLLSKMTSLPKDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLAKKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLSLADISAVQSSFGFDQQQLLAYYNFLTVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQHINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAICELELICDCGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIVHCTKLNVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTKPIIKAQFKPFAKVDGVYTNFKLVGHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFKGCETFGKPVIWLCHDEASLNSLTYFNKPSFKSENRYSVLSVDSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRDDNQTLLVPKIFKARAIEFYGFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNLFCLALKNAFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTICDFYSKLGVGFTSHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDADRANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKACVKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFILLWALLPTYSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSFYYHNSMDCPIVVAVMDEDIGSTMFNVPTKVLRHGFHVLHFLTYAFASDSVQCYTPHIQISYNDFYASGCVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVISEGIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFYQFFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVIANHVLWLFSYCRKIGVNVCNDSTFEETSLTTFMITKDSYCRLKNSVSDVAYNRYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVKMVSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLGDFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKADLVLDALASMTGVSIETLLAAIKRLYMGFQGRQILGSCTFEDELAPSDVYQQLAGVKLQSKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYINTHMIGVTLCVLCFVSFMMLLVKHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGLTYVWLSYFVPAVNFTYVYEVFYGCILCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLFITAFLGTYTWTTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFRMPMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDVKCANVVLLNCLQHLHVASNSRLWQYCSILHNEILSTSDLSVAFDKLAQLLIVLFANPAAVDTKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIKQLEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPALAANTLTIIIPDKQVFDKVVDNVYVAYAGSVWHIQTVQDADGINKQLTDISVDSNWPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNSGSDMNCNIPTQCYYNNGSSGRIVYAVLSDVDGLKYTKIIKDDGNCVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPLGIKDPILYVLTHDVCQVCGFWRDGSCSCVGSGVAVQSKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLSKYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYSVILSTCDGLKFTDESFYKNMYLKSAVMQSVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATNHKYVLSVSPYVCNAPNCDVSDVTKLYLGGMSYYCENHKPHYSFKLVMNGMVFGLYKQSCTGSPYIDDFNKIASCKWTEVDDYVLANECIERLKLFAAETQKATEEAFKQSYASATIQEIVSDREIILCWETGKVKPPLNKNYVFTGYHFTSTGKTVLGEYVFDKSELTNGVYYRATTTYKLSIGDVFVLTSHSVANLSAPTLVPQENYASIRFSSVYSVPLLFQTNVANYQHIGMKRYCTVQGPPGTGKSHLAIGLAVYYYTARVVYTAASHAAVDALCEKAYKFLNINDCTRIIPAKVRVDCYDKFKINDTTCKYVFTTINALPELVTDIVVVDEVSMLTNYELSVINARVKAKHYVYIGDPAQLPAPRVLLSKGSLEPRHFNSITKIMCCLGPDIFLGNCYRCPKEIVETVSALVYDNKLKAKNDNSSLCFKVYFKGQTTHESSSAVNIQQIYLISKFLKANPVWNSAVFISPYNSQNYVAKRILGVQTQTVDSAQGSEYDYVIYSQTAETAHSINVNRFNVAITRAKKGIFCVMSNMQLFESLNFITLPLDKIQNQTLSRLHCTTNLFKDCSKNFLGYHPAHAPSFLSVDDKYKVNEDLAVCLNICEPVLTYSRLISLMGFKLDLTLDGYSKFFITKDEAIKRVRGWVGFDVEGAHATRDNIGTNFPLQIGFSTGVDFVVEATGLFAERDCYIFKRTVAKAPPGDNFKHLIPLMSKGQKWDVVRIRIVQMLSDYLLDLSDSVVFITWSASFELTCLRYFAKLGRELNCDVCPNRATCYNSRTGYYGCWRHSYTCDYVYNPLIVDIQQWGYTGSLTSNHDIICNVHKGAHVASSDAIMTRCLAIYDCFCKSVNWNLEYPIISNEVSINTSCRLLQRVMLKAAMLCNRYNLCYDIGNPKGIACVKDYEFKFYDASPVVKSVKQLFYVYDVHKDNFKDGLCMFWNCNVDKYPSNSIVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTNPFTRTVFENLKPMPFFYYSDTPCVYVDGLESKQVDYVPLRSATCITRCNLGGAVCSKHAEDYCKYLESYNVATTAGFTFWVYKTFDFYNLWNTFTMLQSLENVIYNLVNAGHYDGRIGELPCAIMNDKVVVKINNVDTVIFKNNTSLPTNIAVELFTKRSIRHHPELKILRNLNIDICWKHVLWDYVKDSLFCSSTYGVCKYTDLNFIENLNVLFDGRDNGALEAFRKARNGVFISTGKLSSLSMIKGPQRADLNGVIVDKVGELNVEFWFAMRKDGDDVIFSRADSLSPSHYWSPQGNLGGNCAGNASGNDALARFTIFTQSRVLSTFEPRSDLERDFIDMEDSLFIAKYGLEDYAFDHIVYGSFNYKVIGGLHLLIGLFRRLKKSNLVIQEFLQYDSSIHSYFITDQECGSSKSVCTVIDLLLDDFVVIVKSLNLNCVSKVVNINVDFKDFQFMLWCNDNKIMTFYPKMQATSDWKPGYSMPVLYKYLNVPLERVSLWNYGKAINLPTGCMMNVAKYTQLCQYLNTTTLAVPVNMRVLHLGAGSDKEVAPGSAVLRQWLPSGSILVDNDLNPFVSDSLVTYFGDCMTLPFDCHWDLIISDMYDPLTKNIGDYNVSKDGFFTYICYLIRDKLSLGGSVAIKITEFSWNADLYKLMSYFAFWTVFCTNVNASSSEGFLIGINYLGKSCFEIDGNVMHANYLFWRNSTTWNGGAYSLFDMSKFSLKLAGTAVVNLRPDQLNDLVYSLIERGKLLVRDTRKEIFVGDSLVNTC", "sequence_length": 7152, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4d344268725f1a959f47ad9d2e211b46167e51ff43c2c9aaca990ae456bda1af", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6X3.json", "taxon_id": "443240", "uniprot_accession": "P0C6X3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Avian infectious bronchitis virus (strain Beaudette)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-methyltr-2-pf06460.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06460", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-methyltr-2-pf06460.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp13-stalk-pf20633.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp13-zbd-pf20632.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20632", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp13-zbd-pf20632.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp15-m-pf19216.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19216", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp15-m-pf19216.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp15-n-pf19219.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19219", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp15-n-pf19219.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-rpol-n-pf06478.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06478", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-rpol-n-pf06478.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-exon-pf06471.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06471", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-exon-pf06471.yaml" } ], "pfam_ids": [ "PF00680", "PF01443", "PF01661", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF16348", "PF17896", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASSLKQGVSPKPRDVILVSKDIPEQLCDALFFYTSHNPKDYADAFAVRQKFDRSLQTGKQFKFETVCGLFLLKGVDKITPGVPAKVLKATSKLADLEDIFGVSPLARKYRELLKTACQWSLTVEALDVRAQTLDEIFDPTEILWLQVAAKIHVSSMAMRRLVGEVTAKVMDALGSNLSALFQIVKQQIARIFQKALAIFENVNELPQRIAALKMAFAKCARSITVVVVERTLVVKEFAGTCLASINGAVAKFFEELPNGFMGSKIFTTLAFFKEAAVRVVENIPNAPRGTKGFEVVGNAKGTQVVVRGMRNDLTLLDQKADIPVEPEGWSAILDGHLCYVFRSGDRFYAAPLSGNFALSDVHCCERVVCLSDGVTPEINDGLILAAIYSSFSVSELVTALKKGEPFKFLGHKFVYAKDAAVSFTLAKAATIADVLRLFQSARVIAEDVWSSFTEKSFEFWKLAYGKVRNLEEFVKTYVCKAQMSIVILAAVLGEDIWHLVSQVIYKLGVLFTKVVDFCDKHWKGFCVQLKRAKLIVTETFCVLKGVAQHCFQLLLDAIHSLYKSFKKCALGRIHGDLLFWKGGVHKIVQDGDEIWFDAIDSVDVEDLGVVQEKSIDFEVCDDVTLPENQPGHMVQIEDDGKNYMFFRFKKDENIYYTPMSQLGAINVVCKAGGKTVTFGETTVQEIPPPDVVPIKVSIECCGEPWNTIFKKAYKEPIEVDTDLTVEQLLSVIYEKMCDDLKLFPEAPEPPPFENVALVDKNGKDLDCIKSCHLIYRDYESDDDIEEEDAEECDTDSGEAEECDTNSECEEEDEDTKVLALIQDPASIKYPLPLDEDYSVYNGCIVHKDALDVVNLPSGEETFVVNNCFEGAVKPLPQKVVDVLGDWGEAVDAQEQLCQQEPLQHTFEEPVENSTGSSKTMTEQVVVEDQELPVVEQDQDVVVYTPTDLEVAKETAEEVDEFILIFAVPKEEVVSQKDGAQIKQEPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQRLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEGCTIRVLLFSLSQEHIDYFDVTCKQKTIYLTEDGVKYRSIVLKPGDSLGQFGQVYAKNKIVFTADDVEDKEILYVPTTDKSILEYYGLDAQKYVIYLQTLAQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAKIRFKGFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLKKRVSCNCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLLLFATDGPATVDCDEDAVGTVVFVGSTNSGHCYTQAAGQAFDNLAKDRKFGKKSPYITAMYTRFAFKNETSLPVAKQSKGKSKSVKEDVSNLATSSKASFDNLTDFEQWYDSNIYESLKVQESPDNFDKYVSFTTKEDSKLPLTLKVRGIKSVVDFRSKDGFIYKLTPDTDENSKAPVYYPVLDAISLKAIWVEGNANFVVGHPNYYSKSLHIPTFWENAENFVKMGDKIGGVTMGLWRAEHLNKPNLERIFNIAKKAIVGSSVVTTQCGKLIGKAATFIADKVGGGVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSVVASYKTVLCKVVLATLLIVWFVYTSNPVMFTGIRVLDFLFEGSLCGPYKDYGKDSFDVLRYCADDFICRVCLHDKDSLHLYKHAYSVEQVYKDAASGFIFNWNWLYLVFLILFVKPVAGFVIICYCVKYLVLNSTVLQTGVCFLDWFVQTVFSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPILILDQALYEQLVVEPVSKSVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMAIFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAPPVVWKFSELIKLSDSCLKYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEKKAGGIVSGTFKCFKSYFKWLLIFYILFTACCSGYYYMEVSKSFVHPMYDVNSTLHVEGFKVIDKGVLREIVPEDTCFSNKFVNFDAFWGRPYDNSRNCPIVTAVIDGDGTVATGVPGFVSWVMDGVMFIHMTQTERKPWYIPTWFNREIVGYTQDSIITEGSFYTSIALFSARCLYLTASNTPQLYCFNGDNDAPGALPFGSIIPHRVYFQPNGVRLIVPQQILHTPYVVKFVSDSYCRGSVCEYTRPGYCVSLNPQWVLFNDEYTSKPGVFCGSTVRELMFSMVSTFFTGVNPNIYMQLATMFLILVVVVLIFAMVIKFQGVFKAYATTVFITMLVWVINAFILCVHSYNSVLAVILLVLYCYASLVTSRNTVIIMHCWLVFTFGLIVPTWLACCYLGFIIYMYTPLFLWCYGTTKNTRKLYDGNEFVGNYDLAAKSTFVIRGSEFVKLTNEIGDKFEAYLSAYARLKYYSGTGSEQDYLQACRAWLAYALDQYRNSGVEIVYTPPRYSIGVSRLQSGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDTIYCPRHVLGKFSGDQWNDVLNLANNHEFEVTTQHGVTLNVVSRRLKGAVLILQTAVANAETPKYKFIKANCGDSFTIACAYGGTVVGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISVKESSFSLPKWLESTTVSVDDYNKWAGDNGFTPFSTSTAITKLSAITGVDVCKLLRTIMVKNSQWGGDPILGQYNFEDELTPESVFNQIGGVRLQSSFVRKATSWFWSRCVLACFLFVLCAIVLFTAVPLKFYVYAAVILLMAVLFISFTVKHVMAYMDTFLLPTLITVIIGVCAEVPFIYNTLISQVVIFLSQWYDPVVFDTMVPWMFLPLVLYTAFKCVQGCYMNSFNTSLLMLYQFVKLGFVIYTSSNTLTAYTEGNWELFFELVHTTVLANVSSNSLIGLFVFKCAKWMLYYCNATYLNNYVLMAVMVNCIGWLCTCYFGLYWWVNKVFGLTLGKYNFKVSVDQYRYMCLHKINPPKTVWEVFSTNILIQGIGGDRVLPIATVQAKLSDVKCTTVVLMQLLTKLNVEANSKMHVYLVELHNKILASDDVGECMDNLLGMLITLFCIDSTIDLSEYCDDILKRSTVLQSVTQEFSHIPSYAEYERAKNLYEKVLVDSKNGGVTQQELAAYRKAANIAKSVFDRDLAVQKKLDSMAERAMTTMYKEARVTDRRAKLVSSLHALLFSMLKKIDSEKLNVLFDQASSGVVPLATVPIVCSNKLTLVIPDPETWVKCVEGVHVTYSTVVWNIDTVIDADGTELHPTSTGSGLTYCISGANIAWPLKVNLTRNGHNKVDVVLQNNELMPHGVKTKACVAGVDQAHCSVESKCYYTNISGNSVVAAITSSNPNLKVASFLNEAGNQIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQSKGHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSPTPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTTEKDPVGFCLRNKVCTVCQCWIGYGCQCDSLRQPKSSVQSVAGASDFDKNYLNRVRGSSEARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDTEDGNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKSEVTADHDFFVFNKNIYNISRQRLTKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYYVMLAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFDTYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQEYHPNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPGHFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCLEVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYEMSLEEQDQLFEITKKNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTKFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIYRLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDIVYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYPDPSRILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLYQELSQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQSCGVCVVCNSQTILRCGNCIRKPFLCCKCCYDHVMHTDHKNVLSINPYICSQLGCGEADVTKLYLGGMSYFCGNHKPKLSIPLVSNGTVFGIYRANCAGSENVDDFNQLATTNWSIVEPYILANRCSDSLRRFAAETVKATEELHKQQFASAEVREVFSDRELILSWEPGKTRPPLNRNYVFTGYHFTRTSKVQLGDFTFEKGEGKDVVYYKATSTAKLSVGDIFVLTSHNVVSLVAPTLCPQQTFSRFVNLRPNVMVPECFVNNIPLYHLVGKQKRTTVQGPPGSGKSHFAIGLAVYFSSARVVFTACSHAAVDALCEKAFKFLKVDDCTRIVPQRTTVDCFSKFKANDTGKKYIFSTINALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLNGSLSPKDYNVVTNLMVCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIANNPESRECFKVIVNNGNSDVGHESGSAYNTTQLEFVKDFVCRNKQWREAIFISPYNAMNQRAYRMLGLNVQTVDSSQGSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFTELDSETSLQGTGLFKICNKEFSGVHPAYAVTTKALAATYKVNDELAALVNVEAGSEITYKHLISLLGFKMSVNVEGCHNMFITRDEAIRNVRGWVGFDVEATHACGTNIGTNLPFQVGFSTGADFVVTPEGLVDTSIGNNFEPVNSKAPPGEQFNHLRVLFKSAKPWHVIRPRIVQMLADNLCNVSDCVVFVTWCHGLELTTLRYFVKIGKEQVCSCGSRATTFNSHTQAYACWKHCLGFDFVYNPLLVDIQQWGYSGNLQFNHDLHCNVHGHAHVASVDAIMTRCLAINNAFCQDVNWDLTYPHIANEDEVNSSCRYLQRMYLNACVDALKVNVVYDIGNPKGIKCVRRGDVNFRFYDKNPIVRNVKQFEYDYNQHKDKFADGLCMFWNCNVDCYPDNSLVCRYDTRNLSVFNLPGCNGGSLYVNKHAFYTPKFDRISFRNLKAMPFFFYDSSPCETIQVDGVAQDLVSLATKDCITKCNIGGAVCKKHAQMYAEFVTSYNAAVTAGFTFWVTNKLNPYNLWKSFSALQSIDNIAYNMYKGGHYDAIAGEMPTVITGDKVFVIDQGVEKAVFVNQTTLPTSVAFELYAKRNIRTLPNNRILKGLGVDVTNGFVIWDYANQTPLYRNTVKVCAYTDIEPNGLVVLYDDRYGDYQSFLAADNAVLVSTQCYKRYSYVEIPSNLLVQNGMPLKDGANLYVYKRVNGAFVTLPNTINTQGRSYETFEPRSDIERDFLAMSEESFVERYGKDLGLQHILYGEVDKPQLGGLHTVIGMYRLLRANKLNAKSVTNSDSDVMQNYFVLSDNGSYKQVCTVVDLLLDDFLELLRNILKEYGTNKSKVVTVSIDYHSINFMTWFEDGSIKTCYPQLQSAWTCGYNMPELYKVQNCVMEPCNIPNYGVGITLPSGILMNVAKYTQLCQYLSKTTICVPHNMRVMHFGAGSDKGVAPGSTVLKQWLPEGTLLVDNDIVDYVSDAHVSVLSDCNKYNTEHKFDLVISDMYTDNDSKRKHEGVIANNGNDDVFIYLSSFLRNNLALGGSFAVKVTETSWHEVLYDIAQDCAWWTMFCTAVNASSSEAFLIGVNYLGASEKVKVSGKTLHANYIFWRNCNYLQTSAYSIFDVAKFDLRLKATPVVNLKTEQKTDLVFNLIKCGKLLVRDVGNTSFTSDSFVCTM", "sequence_length": 6629, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79310310f39f1ff42168bd49fcf3a3ce55ccf3d7fa450bf0e11de6e36ef13016", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6Y1.json", "taxon_id": "11122", "uniprot_accession": "P0C6Y1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porcine transmissible gastroenteritis coronavirus (strain Purdue)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cnv-replicase-n-pf16688.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16688", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cnv-replicase-n-pf16688.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF13087", "PF13604", "PF16348", "PF16688", "PF19211", "PF19212", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSKQFKILVNEDYQVNVPSLPIRDVLQEIKYCYRNGFEGYVFVPEYCRDLVDCDRKDHYVIGVLGNGVSDLKPVLLTEPSVMLQGFIVRANCNGVLEDFDLKIARTGRGAIYVDQYMCGADGKPVIEGDFKDYFGDEDIIEFEGEEYHCAWTTVRDEKPLNQQTLFTIQEIQYNLDIPHKLPNCATRHVAPPVKKNSKIVLSEDYKKLYDIFGSPFMGNGDCLSKCFDTLHFIAATLRCPCGSESSGVGDWTGFKTACCGLSGKVKGVTLGDIKPGDAVVTSMSAGKGVKFFANCVLQYAGDVEGVSIWKVIKTFTVDETVCTPGFEGELNDFIKPESKSLVACSVKRAFITGDIDDAVHDCIITGKLDLSTNLFGNVGLLFKKTPWFVQKCGALFVDAWKVVEELCGSLTLTYKQIYEVVASLCTSAFTIVNYKPTFVVPDNRVKDLVDKCVKVLVKAFDVFTQIITIAGIEAKCFVLGAKYLLFNNALVKLVSVKILGKKQKGLECAFFATSLVGATVNVTPKRTETATISLNKVDDVVAPGEGYIVIVGDMAFYKSGEYYFMMSSPNFVLTNNVFKAVKVPSYDIVYDVDNDTKSKMIAKLGSSFEYDGDIDAAIVKVNELLIEFRQQSLCFRAFKDDKSIFVEAYFKKYKMPACLAKHIGLWNIIKKDSCKRGFLNLFNHLNELEDIKETNIQAIKNILCPDPLLDLDYGAIWYNCMPGCSDPSVLGSVQLLIGNGVKVVCDGCKGFANQLSKGYNKLCNAARNDIEIGGIPFSTFKTPTNTFIEMTDAIYSVIEQGKALSFRDADVPVVDNGTISTADWSEPILLEPAEYVKPKNNGNVIVIAGYTFYKDEDEHFYPYGFGKIVQRMYNKMGGGDKTVSFSEEVDVQEIAPVTRVKLEFEFDNEIVTGVLERAIGTRYKFTGTTWEEFEESISEELDAIFDTLANQGVELEGYFIYDTCGGFDIKNPDGIMISQYDINITADEKSEVSASSEEEEVESVEEDPENEIVEASEGAEGTSSQEEVETVEVADITSTEEDVDIVEVSAKDDPWAAAVDVQEAEQFNPSLPPFKTTNLNGKIILKQGDNNCWINACCYQLQAFDFFNNEAWEKFKKGDVMDFVNLCYAATTLARGHSGDAEYLLELMLNDYSTAKIVLAAKCGCGEKEIVLERAVFKLTPLKESFNYGVCGDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVKPVMHAVYTGTTQNGHYMVDDIEHGYCVDGMGIKPLKKRCYTSTLFINANVMTRAEKPKQEFKVEKVEQQPIVEENKSSIEKEEIQSPKNDDLILPFYKAGKLSFYQGALDVLINFLEPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFFENVIEHLSVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIFNVRLETSLQCLLKTVNDRGLNVFVYTDQERQTIENFFSCSIPVNVTEDNVNHERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVIKAIDIDWQAHYGFRDAAAFSASSHDAYKFEVVTHSNFIVHKQTDNNCWINAICLALQRLKPQWKFPGVRGLWNEFLERKTQGFVHMLYHISGVKKGEPGDAELMLHKLGDLMDNDCEIIVTHTTACDKCAKVEKFVGPVVAAPLAIHGTDETCVHGVSVNVKVTQIKGTVAITSLIGPIIGEVLEATGYICYSGSNRNGHYTYYDNRNGLVVDAEKAYHFNRDLLQVTTAIASNFVVKKPQAEERPKNCAFNKVAASPKIVQEQKLLAIESGANYALTEFGRYADMFFMAGDKILRLLLEVFKYLLVLFMCLRSTKMPKVKVKPPLAFKDFGAKVRTLNYMRQLNKPSVWRYAKLVLLLIAIYNFFYLFVSIPVVHKLTCNGAVQAYKNSSFIKSAVCGNSILCKACLASYDELADFQHLQVTWDFKSDPLWNRLVQLSYFAFLAVFGNNYVRCFLMYFVSQYLNLWLSYFGYVEYSWFLHVVNFESISAEFVIVVIVVKAVLALKHIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYRFYVGDEFTSYDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANVRNACVYFSQLIGKPIKIVNSDLLEDLSVDFKGALFNAKKNVIKNSFNVDVSECKNLDECYRACNLNVSFSTFEMAVNNAHRFGILITDRSFNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFNAVGSDDDLPYERFTESVSPKSGSGFFDVITQLKQIVILVFVFIFICGLCSVYSVATQSYIESAEGYDYMVIKNGIVQPFDDTISCVHNTYKGFGDWFKAKYGFIPTFGKSCPIVVGTVFDLENMRPIPDVPAYVSIVGRSLVFAINAAFGVTNMCYDHTGNAVSKDSYFDTCVFNTACTTLTGLGGTIVYCAKQGLVEGAKLYSDLMPDYYYEHASGNMVKLPAIIRGLGLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVYDNEFGNGYICGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDCTFLIVMIIVTLVVNNVSYFVTQNTFFMIIYAIVYYFITRKLAYPGILDAGFIIAYINMAPWYVITAYILVFLYDSLPSLFKLKVSTNLFEGDKFVGNFESAAMGTFVIDMRSYETIVNSTSIARIKSYANSFNKYKYYTGSMGEADYRMACYAHLGKALMDYSVNRTDMLYTPPTVSVNSTLQSGLRKMAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVIASDTTRVINYENEMSSVRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFTELSSTDAFSMLAAKTGQSVEKLLDSIVRLNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQAGKVKSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTTLISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNMVKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVIASYRIAYYIVVCVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQSKLTEMKCTNVVLLGLLSKMHVESNSKEWNYCVGLHNEINLCDDPEIVLEKLLALIAFFLSKHNTCDLSELIESYFENTTILQSVASAYAALPSWIALEKARADLEEAKKNDVSPQILKQLTKAFNIAKSDFEREASVQKKLDKMAEQAAASMYKEARAVDRKSKIVSAMHSLLFGMLKKLDMSSVNTIIDQARNGVLPLSIIPAASATRLVVITPSLEVFSKIRQENNVHYAGAIWTIVEVKDANGSHVHLKEVTAANELNLTWPLSITCERTTKLQNNEIMPGKLKERAVRASATLDGEAFGSGKALMASESGKSFMYAFIASDNNLKYVKWESNNDIIPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRLQAGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGVEANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTGTQDPIRFCIENEVCVVCGCWLNNGCMCDRTSMQSFTVDQSYLNRVRGSSAARLEPCNGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKHDAYYIVKRCTKTVMDHEQVCYNDLKDSGAVAEHDFFTYKEGRCEFGNVARRNLTKYTMMDLCYAIRNFDEKNCEVLKEILVTVGACTEEFFENKDWFDPVENEAIHEVYAKLGPIVANAMLKCVAFCDAIVEKGYIGVITLDNQDLNGNFYDFGDFVKTAPGFGCACVTSYYSYMMPLMGMTSCLESENFVKSDIYGSDYKQYDLLAYDFTEHKEYLFQKYFKYWDRTYHPNCSDCTSDECIIHCANFNTLFSMTIPMTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLDTMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGITYQTVKPGHFNKDFYDFITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFECYDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQMNLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNMLKNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHNDRFYRLSNELAQVLTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKSIQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAFKATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGVFVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDSFSVTMLEEGQDKFWSEEFYASLYEKSTVLQAAGMCVVCGSQTVLRCGDCLRRPLLCTKCAYDHVMGTKHKFIMSITPYVCSFNGCNVNDVTKLFLGGLSYYCMNHKPQLSFPLCANGNVFGLYKSSAVGSEAVEDFNKLAVSDWTNVEDYKLANNVKESLKIFAAETVKAKEESVKSEYAYAVLKEVIGPKEIVLQWEASKTKPPLNRNSVFTCFQISKDTKIQLGEFVFEQSEYGSDSVYYKSTSTYKLTPGMIFVLTSHNVSPLKAPILVNQEKYNTISKLYPVFNIAEAYNTLVPYYQMIGKQKFTTIQGPPGSGKSHCVIGLGLYYPQARIVYTACSHAAVDALCEKAAKNFNVDRCSRIIPQRIRVDCYTGFKPNNTNAQYLFCTVNALPEASCDIVVVDEVSMCTNYDLSVINSRLSYKHIVYVGDPQQLPAPRTLINKGVLQPQDYNVVTKRMCTLGPDVFLHKCYRCPAEIVKTVSALVYENKFVPVNPESKQCFKMFVKGQVQIESNSSINNKQLEVVKAFLAHNPKWRKAVFISPYNSQNYVARRLLGLQTQTVDSAQGSEYDYVIYTQTSDTQHATNVNRFNVAITRAKVGILCIMCDRTMYENLDFYELKDSKIGLQAKPETCGLFKDCSKSEQYIPPAYATTYMSLSDNFKTSDGLAVNIGTKDVKYANVISYMGFRFEANIPGYHTLFCTRDFAMRNVRAWLGFDVEGAHVCGDNVGTNVPLQLGFSNGVDFVVQTEGCVITEKGNSIEVVKARAPPGEQFAHLIPLMRKGQPWHIVRRRIVQMVCDYFDGLSDILIFVLWAGGLELTTMRYFVKIGRPQKCECGKSATCYSSSQSVYACFKHALGCDYLYNPYCIDIQQWGYTGSLSMNHHEVCNIHRNEHVASGDAIMTRCLAIHDCFVKRVDWSIVYPFIDNEEKINKAGRIVQSHVMKAALKIFNPAAIHDVGNPKGIRCATTPIPWFCYDRDPINNNVRCLDYDYMVHGQMNGLMLFWNCNVDMYPEFSIVCRFDTRTRSKLSLEGCNGGALYVNNHAFHTPAYDRRAFAKLKPMPFFYYDDSNCELVDGQPNYVPLKSNVCITKCNIGGAVCKKHAALYRAYVEDYNIFMQAGFTIWCPQNFDTYMLWHGFVNSKALQSLENVAFNVVKKGAFTGLKGDLPTAVIADKIMVRDGPTDKCIFTNKTSLPTNVAFELYAKRKLGLTPPLTILRNLGVVATYKFVLWDYEAERPFSNFTKQVCSYTDLDSEVVTCFDNSIAGSFERFTTTRDAVLISNNAVKGLSAIKLQYGLLNDLPVSTVGNKPVTWYIYVRKNGEYVEQIDSYYTQGRTFETFKPRSTMEEDFLSMDTTLFIQKYGLEDYGFEHVVFGDVSKTTIGGMHLLISQVRLAKMGLFSVQEFMNNSDSTLKSCCITYADDPSSKNVCTYMDILLDDFVTIIKSLDLNVVSKVVDVIVDCKAWRWMLWCENSHIKTFYPQLQSAEWNPGYSMPTLYKIQRMCLERCNLYNYGAQVKLPDGITTNVVKYTQLCQYLNTTTLCVPHKMRVLHLGAAGASGVAPGSTVLRRWLPDDAILVDNDLRDYVSDADFSVTGDCTSLYIEDKFDLLVSDLYDGSTKSIDGENTSKDGFFTYINGFIKEKLSLGGSVAIKITEFSWNKDLYELIQRFEYWTVFCTSVNTSSSEGFLIGINYLGPYCDKAIVDGNIMHANYIFWRNSTIMALSHNSVLDTPKFKCRCNNALIVNLKEKELNEMVIGLLRKGKLLIRNNGKLLNFGNHFVNTP", "sequence_length": 6684, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "868438fe13fa1740e6fc11562c0bd4f580027d8496300bcfa06db0bcf06d04a3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6Y5.json", "taxon_id": "11151", "uniprot_accession": "P0C6Y5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Severe acute respiratory syndrome coronavirus 2", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12379", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF16251", "PF16348", "PF19211", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV", "sequence_length": 4405, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bb8d4ddedb5cd0daf2e688e644633a2c5376e718cb62935cb3380dcf38173bf8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DTC1.json", "taxon_id": "2697049", "uniprot_accession": "P0DTC1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Severe acute respiratory syndrome coronavirus 2", "origins": [ { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/3-6-diaminoacridine.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:8452", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/3-6-diaminoacridine.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/anacardic-acid.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:2696", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/anacardic-acid.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/baicalein.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:2979", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/baicalein.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/ebselen.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:77543", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/ebselen.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/hexachlorophene.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:5693", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/hexachlorophene.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antifungal/disulfiram.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:4659", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antifungal/disulfiram.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antiviral/n-4-1h-benzotriazol-1-yl-acetyl-thiophen-3-yl-methyl-amino-phenyl-prop.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:149680", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antiviral/n-4-1h-benzotriazol-1-yl-acetyl-thiophen-3-yl-methyl-amino-phenyl-prop.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12379", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF13087", "PF16251", "PF16348", "PF19211", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQAVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATLQAENVTGLFKDCSKVITGLHPTQAPTHLSVDTKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATREAVGTNLPLQLGFSTGVNLVAVPTGYVDTPNNTDFSRVSAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGFELTSMKYFVKIGPERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMIDVQQWGFTGNLQSNHDLYCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWTIEYPIIGDELKINAACRKVQHMVVKAALLADKFPVLHDIGNPKAIKCVPQADVEWKFYDAQPCSDKAYKIEELFYSYATHSDKFTDGVCLFWNCNVDRYPANSIVCRFDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFVNLKQLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRHHANEYRLYLDAYNMMISAGFSLWVYKQFDTYNLWNTFTRLQSLENVAFNVVNKGHFDGQQGEVPVSIINNTVYTKVDGVDVELFENKTTLPVNVAFELWAKRNIKPVPEVKILNNLGVDIAANTVIWDYKRDAPAHISTIGVCSMTDIAKKPTETICAPLTVFFDGRVDGQVDLFRNARNGVLITEGSVKGLQPSVGPKQASLNGVTLIGEAVKTQFNYYKKVDGVVQQLPETYFTQSRNLQEFKPRSQMEIDFLELAMDEFIERYKLEGYAFEHIVYGDFSHSQLGGLHLLIGLAKRFKESPFELEDFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIKSQDLSVVSKVVKVTIDYTEISFMLWCKDGHVETFYPKLQSSQAWQPGVAMPNLYKMQRMLLEKCDLQNYGDSATLPKGIMMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTANKWDLIISDMYDPKTKNVTKENDSKEGFFTYICGFIQQKLALGGSVAIKITEHSWNADLYKLMGHFAWWTAFVTNVNASSSEAFLIGCNYLGKPREQIDGYVMHANYIFWRNTNPIQLSSYSLFDMSKFPLKLRGTAVMSLKEGQINDMILSLLSKGRLIIRENNRVVISSDVLVNN", "sequence_length": 7096, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "edbd5d8a5deb16bfd31ff3029c7897b816b752cb26cd0dcf23d089dcdd841586", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DTD1.json", "taxon_id": "2697049", "uniprot_accession": "P0DTD1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/macrodomain-poa1p-like-family-macrodomains-are-found-in-a-variety-of-p-cd02901.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd02901", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/macrodomain-poa1p-like-family-macrodomains-are-found-in-a-variety-of-p-cd02901.yaml" } ], "pfam_ids": [ "PF01661" ], "protein_name": "ADP-ribose 1''-phosphate phosphatase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNITYVKGNILKPKSYARILIHSCNCNGSWGGGIAYQLALRYPKAEKDYVEVCEKYGSNLLGKCILLPSYENSDLLICCLFTSSFGGSSHGEKQSILNYTKLALDKLKTFREAKDKTRTSEDSIGDYLNGHIKYPIGEYKLEMPQINSGIFGVPWKETERVLEEFSGDMSFTVYQL", "sequence_length": 177, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "093674d77aa0308ff20839204025b5092b5c516b46577cb09794cdbc36ebe151", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38218.json", "taxon_id": "559292", "uniprot_accession": "P38218", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis E virus genotype 2 (isolate Human/Mexico)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3729-pf12526.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12526", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3729-pf12526.yaml" } ], "pfam_ids": [ "PF00978", "PF01443", "PF01660", "PF01661", "PF05417", "PF12526" ], "protein_name": "Non-structural polyprotein pORF1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAHQFIKAPGITTAIEQAALAAANSALANAVVVRPFLSHQQVEILINLMQPRQLVFRPEVFWNHPIQRVIHNELEQYCRARSGRCLEIGAHPRSINDNPNVLHRCFLHPVGRDVQRWYTAPTRGPAANCRRSALRGLPPADRTYCFDGFAGCRFAAETGVALYSLHDLQPADVAEAMARHGMTRLYAAFHLPPEVLLPPGTYRTSSYLLIHDGKRAVVTYEGDTSAGYNHDVATLRTWIRTTKVVGEHPLVIERVRGIGCHFVLLITAAPEPSPMPYVPYPRSTEVYVRSIFGPGGSPSLFPTACAVKSTFHAVPTHIWDRLMLFGATLDDQAFCCSRLMTYLRGISYKVTVGALVANEGWNATEDALTAVITAAYLTICHQRYLRTQAISKGMRRLELEHAQKFISRLYSWLFEKSGRDYIPGRQLQFYAQCRRWLSAGFHLDPRTLVFDESVPCSCRTTIRRIAGKFCCFMKWLGQECSCFLQPAEGLAGDQGHDNEAYEGSDVDTAEPATLDITGSYIVDGRSLQTVYQALDLPADLVARAARLSATVTVTETSGRLDCQTMIGNKTFLTTFVDGARLEVNGPEQLNLSFDSQQCSMAAGPFCLTYAAVDGGLEVHFSTAGLESRVVFPPGNAPTAPPSEVTAFCSALYRHNRQSQRQSVIGSLWLHPEGLLGLFPPFSPGHEWRSANPFCGESTLYTRTWSTITDTPLTVGLISGHLDAAPHSGGPPATATGPAVGSSDSPDPDPLPDVTDGSRPSGARPAGPNPNGVPQRRLLHTYPDGAKIYVGSIFESECTWLVNASNAGHRPGGGLCHAFFQRYPDSFDATKFVMRDGLAAYTLTPRPIIHAVAPDYRLEHNPKRLEAAYRETCARRGTAAYPLLGAGIYQVPVSLSFDAWERNHRPFDELYLTELAARWFESNRPGQPTLNITEDTARAANLALELDSGSEVGRACAGCKVEPGVVRYQFTAGVPGSGKSKSVQQADVDVVVVPTRELRNAWRRRGFAAFTPHTAARVTSGRRVVIDEAPSLPPHLLLLHMQRAASVHLLGDPNQIPAIDFEHTGLIPAIRPELVPTSWWHVTHRCPADVCELVRGAYPKIQTTSKVLRSLFWGEPAVGQKLVFTQAAKAAHPGSITVHEAQGATFTTTTIIATADARGLIQSSRAHAIVALTRHTEKCVILDSPGLLREVGISDAIVNNFFLSGGEVGHQRPSVIPRGNPDRNVDVLAAFPPSCQISAFHQLAEELGHRPAPVAAVLPPCPELEQGLLYLPQELASCDSVVTFELTDIVHCRMAAPSQRKAVLSTLVGRYGRRTRLYDAGHTDVRASLARFIPTLGRVTATTCELFELVEAMVEKGQDGSAVLELDLCSRDVSRITFFQKDCNKFTTGETIAHGKVGQGIFRWSKTFCALFGPWFRAIEKAILSLLPQAVFYGDAYDDSVFSAAVAGASHAMVFENDFSEFDSTQNNFSLGLECAIMEECGMPQWLVRLYHAVRSAWILQAPKESLRGFWKKHSGEPGSLLWNTVWNMAIIAHCYEFRDLQVAAFKGDDSVVLCSEYRQSPGAGSLIAGCGLKLKADFRPIGLYAGVVVAPGLGALPDVVRFAGRLSEKNWGPDPERAEQLRLAVQDFLRRLTNVAQICVEVVSRVYGVSPGLVHNLIGMLQTIGDGKAHFTESVKPILDLTHSIMHRSE", 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"PF01443", "PF01660", "PF01661", "PF05417", "PF12526" ], "protein_name": "Non-structural polyprotein pORF1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAHQFIKAHGITTAIEQAALAAANSALANAVVVRPFLSHQQIEILINLMQPRQLVFRPEVFWNHPIQRVIHNELELYCRARSGRCLEIGAHPRSINDNPNVVHRCFLLPVGRDVQRWYTAPTRGPAANCRRSALRGLPAVDRTYCLDGFSGCNFPAETGIALYSLHDMSPSDVAEAMFRHGMTRLYAALHLPPEVLLPPGTYRTASYLLIHDGRRVVVTYEGDTSAGYNHDVSNLRSWIRTTKVTGDHPLVIERVRAIGCHFVLLLTAAPEPSPMPYVPYPRSTEVYVRSIFGPGGTPSLFPTSCSTKSTFHAVPAHIWDRLMLFGATLDDQAFCCSRLMTYLRGISYKVTVGTLVANEGWNASEDALTAVITAAYLTICHQRYLRTQAISKGMRRLEREHAQKFITPLYSWLFEKSGRDYIPGRQLEFYAQCRRWLSAGFHLDPRVLVFDESAPCRCRTAIRKALSKFCCFMKWLGQECTCFLQPAEGVVGDQGHDNEAYEGSDVDPAESAISDISGSYVVPGTALQPLYQALDLPAEIVARAGRLTATVKVSQVDGRIDCETLLGNKTFRTSFVDGAVLEANGPERYNLSFDASQSTMAAGPFSLTYAASAAGLEVRYVAAGLDHRAVFAPGVSPRSAPGEVTAFCSALYRFNREAQRHSLTGNLWFHPEGLIGLFAPFSPGHVWESANPFCGESTLYTRTWSEVDAVSSPARPDLGLMSEPSIPSRAATPTLAVLLPPPAPDPPPPPSAPALDEPASGATAGAPAITHQTARHRRLLFTYPDGSKVFAGSLFESTCTWLVNASNVDHRPGGGLCHAFYQRYPASFDAASFVMRDGAAAYTLTPRPIIHAVAPDYRLEHNPKRLEAAYRETCSRLGTAAYSLLGTGIYQVPIGPSFDAWERNHRPGDELYLPELAARWFEANRPTRPTLTITEDVARTANLAIELDSATDVGRACAGCRVTPGVVQYQFTAGVPGSGKSRSITQADVDVVVVPTRELRNAWRRRGFAAFNPHTAARVTQGRRVVIDEAPSLPPHLLLLHMQRAATVHLLGDPNQIPAIDFEHAGLVPAIRPDLGPTSWWHVTHRCPADVCELIRGAYPMIQTTSRVLRSLFWGEPAVGQKLVFTQAAKAANPGSVTVHEAQGATYTETTIIATADARGLIQSSRAHAIVALTRHTEKFVIIDAPGLLREVGISDAIVNNFFLAGGEIGHQRPSVIPRGNPDANVDTLAAFPPSCQISAFHQLAEELGHRPVPVAAVLPPCPELEQGLLYLPQGLTACDSVVTFELTDIVHCRMAAPNQRKAVLSTLVGRYGRRTKLYNASHSDVRDSLARFIPAIGPVQVTTCELYELVEAMVEKGQDGSAVLELDLCNRDVSRITFFQKDCNKFTTGETIAHGKVGQGISAWSKTFCALFGPWFRAIEKAILALLPQGVFYGDAFDDTVFSAAVAAAKASMVFENDFSEFDSTQNNFSLGLECAIMEECGMPQWLIRLYHLIRSAWILQAPKESLRGFWKKHSGEPGTLLWNTVWNMAVITHCYDFRDFQVAAFKGDDSIVLCSEYRQSPGAAVLIAGCGLKLKVDFRPIGLYAGVVVAPGLGALPDVVRFAGRLTEKNWGPGPERAEQLRLAVSDFLRKLTNVAQMCVDVVSRVYGVSPGLVHNLIGMLQAVADGKAHFTESVKPVLDLTNSILCRVE", "sequence_length": 1693, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "510c3ba0e1c5b72201d59655e3976cb1bde18ba494e71b78916bf264c295534d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q04610.json", "taxon_id": "31769", "uniprot_accession": "Q04610", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kh-parp14-1-pf23084.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23084", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kh-parp14-1-pf23084.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kh-parp14-2-pf23248.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23248", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kh-parp14-2-pf23248.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kh-parp14-3-pf23249.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23249", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kh-parp14-3-pf23249.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kh-parp14-4-pf23251.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kh-parp14-4-pf23251.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kh-parp14-5-pf23252.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kh-parp14-5-pf23252.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kh-parp14-6-pf23253.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23253", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kh-parp14-6-pf23253.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q2EMV9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00644", "PF01661", "PF22005", "PF23084", "PF23085", "PF23222", "PF23245", "PF23248", "PF23249", "PF23251", "PF23252", "PF23253", "PF23254" ], "protein_name": "Protein mono-ADP-ribosyltransferase PARP14", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "9085ee7cb1314d7257f88375ca7c6eafd29b50337eab3f223ca2960a7e8cdb6d", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAASGSFPLLVEGSWGPDPPKNLINKLQVYFQSRKKSGGGECEVVPEPGNPARFRVLFSPEDVRQNVLERGNHELVWQEKGTFKLTVLMPTDPEEASASKKSRKESPEEESKTKEDAVKQGDLDITHSPSSGSEKTEDVPKECENISSMVAFENLPEKVSEMVLTILVENISGLPSDDFKVEVNRDFAVAVVTFQKPIDIKKFIVDCISHRSNQQLQLAPRLLETTNVVRVENLPPGVDEYQLQLFFENPFNGGGRVARVECFPEESSALVEFCDSKVLDTVMAKTHSYNKMPLSVFPYYPSLGTALYGEEKPLIKLPASFQESLDLPLWKFFQKNNHLIEEINNEMRCCHCELTWSEINGKLTIRPAATLVNHRLSIKTWQRDASAVLSGIKSKYGVELFEVCSPVWDIIKHELESGDDRVLVEFEKESLNIAGKSEDVQGMSQKIRELIESTTEKLRREEQSLKEKVAISPGKHYLLHHSGFLKDLSKGFPEMEISYDATAQFLYLKGFRADVYKVKCDIQEKVFSMAQKDVQVSSEVFEFLQQVDSQRLSKSLFEAQNILAIYELKGTALFLVGSSFKDLAEAETKMLSALSHKQIEVEDKEVLISNGWKKKVHPLQKRHSSCATIIVQNELTSETPAKVIVTGCVKEVNEIHRQLFEYLENNMKVERALKIKPSLIVDYLRTDKRLLSKIKKAHVYVHFKPKDNPNSILLTGCKSKVLECMNLVKEIQDSVCVQRFQTDKAGVRHFFKDKESYYKTEIGRQFGCVIELEEDREEKGEEEDGEEEEGEEEGESSINEQKCHLQRDIAPGVKLFVLEEDLSRFPVDVVVNAANENLKHISGLAQALSKAAGPELQTECDQIVKEGGVVLPGNAVISKAGKLPCHHVIHAVGPRWKGDKVLECVSLLKKVVRQSLSLAEEHRCRSIAMPAVSAGIFDFPLELCVANIVSAIKEHFQHKRDTHTLKKIYLVGLPAKVARAFAEAVKTTYKDSLSHTAFPSSLKALVPLGKTPQKQGSLLVSPEGLRIRLVEEGVQNATTHAIVNSISPDLKLNKGPLSQAFLEKAGPKLQEELTRSGQGVSVDVGTILQTSGCNLNSRHVFHVVPPPWKSNNSAWSLKIMKNIIRDCLKTTENLSLQSIAFPAIGTGNLRFPKPEFAKLIISEVLKFSSRNQLKTLQEVQFLLHPKDHENIQAFSDEFDKRNNGDPSDKNPKAEDTQGIYGSLSSPTLGMHEMNIGPILFQVATGNIIKEVADVIVNSTTLTFDLKSGVSKAILEGAGQNVEQECSLLAKQSNHGYIVTGGGLLQCKNIIHVVGGNDVKKSVSCVLEECEQRNYSSICLPAIGTGNAQQDPNVVAKAIIDAIEEFVQKKSVQAVKRVKVVIFQPHILQFFYDNMKEREGSPAPPKQSPAKQSVMSKIASFLGFPKQASPKKNTLVLEKKIEHTVFQVCGSGVDSVNKTISWLKELITKEQLSYTNDDECVSDFDMEEYEKLNEIQKELNITIEMNQKKTSIQVSGISRDVIKARDEIEGMIKSIRLAKEKESQADYISTYVEWQYIDKNITQCFDKMTNMKLEVAWKAKKKDTVVQIHNQDFTVDLSTNTATAPQGQTFTVQRLVKAEAEIPANWSDMKQDKLLLVNLQTSDPEYNMVASAFRQTCSNFFIEKIERIQNPALWRRYQAYKKSMDEKNGNVRNEKHLFHGTEASSLPQLNSNGFNRSYAGKNATAYGKGTYFAVKASYSACDTYSRPDTNGRKYMYYVRVLTGNYTNGNASLIVPPSRDPQNAADLYDTVTDNDKNPSIFVVFYDNQTYPEYLITFRQ", "sequence_length": 1817, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "9085ee7cb1314d7257f88375ca7c6eafd29b50337eab3f223ca2960a7e8cdb6d", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q2EMV9.json", "taxon_id": "10090", "uniprot_accession": "Q2EMV9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/adp-ribosylglutamate-protein-hydrolase-activity-go0140293.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140293", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/adp-ribosylglutamate-protein-hydrolase-activity-go0140293.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/o-acetyl-adp-ribose-deacetylase-activity-go0061463.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061463", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/o-acetyl-adp-ribose-deacetylase-activity-go0061463.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/peptidyl-glutamate-adp-deribosylation-go0140291.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140291", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/peptidyl-glutamate-adp-deribosylation-go0140291.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-de-adp-ribosylation-go0051725.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051725", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-de-adp-ribosylation-go0051725.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/purine-nucleoside-metabolic-process-go0042278.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042278", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/purine-nucleoside-metabolic-process-go0042278.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/o-acetyl-adp-ribose-deacetylase-nf001664.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF001664", "section": "canonical_examples", "url": 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"data/traits/function/pathway/go/protein-de-adp-ribosylation-go0051725.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051725", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-de-adp-ribosylation-go0051725.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/purine-nucleoside-metabolic-process-go0042278.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042278", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/purine-nucleoside-metabolic-process-go0042278.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/macrodomain-o-acetyl-adp-ribose-oaadpr-family-macrodomains-are-found-i-cd02908.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd02908", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/macrodomain-o-acetyl-adp-ribose-oaadpr-family-macrodomains-are-found-i-cd02908.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/macro-domain-ipr002589.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002589", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/macro-domain-ipr002589.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/macro-pf01661.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01661", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/macro-pf01661.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/macro-domain-like-ipr043472.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR043472", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/macro-domain-like-ipr043472.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/macro.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51154", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/macro.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/leucine-aminopeptidase-subunit-e-domain-1-3-40-220-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.220.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/leucine-aminopeptidase-subunit-e-domain-1-3-40-220-10.yaml" } ], "pfam_ids": [ "PF01661" ], "protein_name": "ADP-ribose glycohydrolase MACROD1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLQSQVSGRLAQLRAAGQLLVSLRPWPGRSAGGPRPRGSACGPLVALGEHGYCAWLSAGVGAWGAAGRGAWVRTWAPLAMAAKVDLSTSTDWKEAKSFLKGLSDKQREEHYFCKDFIKLKKIPTWKETAKGLAVKVEDPKYKKDKQLNEKISLYRGDITKLEVDAIVNAANSSLLGGGGVDGCIHRAAGSLLTDECRTLQNCETGKAKITCGYRLPAKYVIHTVGPIAVGQPTASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPNEEAAEVVLASLREWLEQHKDKVDRLIICVFLEKDEGIYRERLPHYFPVA", "sequence_length": 323, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "82b7b5c60e2e291edace203573c3377fa5e719cdf82196e9f38378dd5ee0547e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q922B1.json", "taxon_id": "10090", "uniprot_accession": "Q922B1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Feline coronavirus (strain FIPV WSU-79/1146)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cnv-replicase-n-pf16688.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16688", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cnv-replicase-n-pf16688.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF13087", "PF13604", "PF16348", "PF16688", "PF19211", "PF19212", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSKQFKILVNEDYQVNVPSLPFRDALQEIKYCYRNGFDGYVFVPEYRRDLVDCNRKDHYVIGVLGNGISDLKPVLLTEPSVMLQGFIVRANCNGVLEDFDLKFARTGNGAIYVDQYMCGADGKPVIEGEFKDYFGDEDVIIYEGEEYHCAWLTVRDEKPLWQQTLLTIREIQYNLDIPHKLPNCAIREVAPPVKKNSKVVLSEEYRKLYDIFGSPFMGNGDSLNTCFDSLHFIAATLKCPCGAESSGVGDWTGFKTACCGLHGKVKGVTLGAVKPGDAIVTSMSAGKGVKFFANSVLQYAGDVENVSVWKVIKTFTVNETVCTTDFEGELNDFIRPESTSPVSCSIKRAFITGEVDDAVHDCIIAGKLDLSTNLFGSANLLFKKMPWFVQKCGAIFADAWKVVEELLCSLKLTYKQIYDVVASLCTSAFTIMDYKPVFVVSSNSVKDLVDKCVKILVKAFDVFTQTITIAGVEAKCFVLGSKYLLFNNALVKLVSVKILGKRQKGLDSAFFATNLIGATVNVTPQRTESAYISLNKVDDVVTPGGGHIVIIGDMAFYKSEEYYFMMASPDSVLVNNVFKAARVPSYNIVYDVNDDTKSKMVVKIGTSFDFDGDLDAAIAKVNDLLIEFRQEKLCFRALKDGENILVEAYLKKYKMPVCLKNHVGLWDIIRQDSGKKGFLDTFNHLNELEDVKDIKIQTIKNIICPDLLLELDFGAIWYRCMPACSDKSILGNVKIMLGNGVKVVCDGCHSFANRLTINYNKLCDTARKDIEIGGIPFSTFKTPSSSFIDMKDAIYSVVEYGEALSFKTASVPVTNSGIITTDDWSDPILLEPADYVEPKDNGDVIVIAGYTFYKDEDDHFYPYGSGMVVQKMYNKMGGGDKSVSFSDNVNVREIEPVTRVRLEFEFDNEVVTQVLEKVIGTKYKFIGTTWEEFEDSISEKLDKIFDTLAEQGVELEGYFIYDTCGGFDINNPDGVMISQYDLNTAADDKSDSDASVEDISLISDNEDVEQIEEDNTSTDDAEDVSSVEGETVSVVDVEDFVEQVSLVEENNVLTPAVNPDEQLSSVEKKDEVSAKNDPWAAAVDEQEAEQPKPSLTPFKTTNLNGKIILKQQDNNCWINACCYQLQAFDFFNHDLWDGFKKDDVMPFVDFCYAALTLKQGDSGDAEYLLETMLNDYSTAKVTLSAKCGCGVKEIVLERTVFKLTPLRNEFKYGVCGDCKQINMCKFASVEGSGVFVHDRIEKQTPVSQFIVTPTMHAVYTGTTQSGHYMIEDCIHDYCVDGMGIKPRKHKFYTSTLFLNANVMTAKSKTMVEPPVPVEDKCVEDCQSPKDLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNGTIPIKVTEDTVNQKRVSVALDKTYGEQLKGTVVIKDKDVTNQLPSVSDVGEKVVKALDVDWNAYYGFPNAAAFSASSHDAYEFDVVTHNNFIVHKQTDNNCWVNAICLALQRLKPTWKFPGVKSLWDAFLTRKTAGFVHMLYHISGLTKGQPGDAELTLHKLVDLMSSDSAVTVTHTTACDKCAKVETFTGPVVAAPLLVCGTDEICVHGVHVNVKVTSIRGTVAITSLIGPVVGDVIDATGYICYTGLNSRGHYTYYDNRNGLMVDADKAYHFEKNLLQVTTAIASNFVANTPKKEIMPKTQAKESKAKESNTARVFSEVEENPKNIVRKEKLLAIESGVDYTITTLGKYADVFFMAGDKILRFLLEVFKYLLVVFMCLRKSKMPKVKVKPPHVFRNLGAKVRTLNYVRQLNKPALWRYIKLVLLLIALYHFFYLFVSIPVVHKLACSGSVQAYSNSSFVKSEVCGNSILCKACLASYDELADFDHLQVSWDYKSDPLWNRVIQLSYFIFLAVFGNNYVRCLLMYFVSQYLNLWLSYFGYVKYSWFLHVVNFESISVEFVIIVVVFKAVLALKHIFLPCNNPSCKTCSKIARQTRIPIQVVVNGSMKTVYVHANGTGKLCKKHNFYCKNCDSYGFDHTFICDEIVRDLSNSIKQTVYATDRSYQEVTKVECTDGFYRFYVGEEFTAYDYDVKHKKYSSQEVLKTMFLLDDFIVYNPSGSSLASVRNVCVYFSQLIGRPIKIVNSELLEDLSVDFKGALFNAKKNVIKNSFNVDVSECKNLEECYKLCNLDVTFSTFEMAINNAHRFGILITDRSFNNFWPSKIKPGSSGVSAMDIGKCMTFDAKIVNAKVLTQRGKSVVWLSQDFSTLSSTAQKVLVKTFVEEGVNFSLTFNAVGSDEDLPYERFTESVSAKSGSGFFDVLKQLKQLFWCLVLFITLYGLCSVYSVATQSYIDSAEGYDYMVIKNGVVQSFDDSINCVHNTYKGFAVWFKAKHGFVPTFDKSCPIVLGTVFDLGNMRPIPDVPAYVALVGRSLVFAINAAFGVTNVCYDHTGAAVSKNSYFDTCVFNSACTTLTGIGGTVVYCAKQGLVEGAKLYSELLPDYYYEHASGNMVKIPAIIRSFGLRFVKTQATTYCRVGECTESQAGFCFGGDNWFVYDKEFGDGYICGSSTLGFFKNVFALFNSNMSVVATSGAMLANIVIACLAIAVCYGVLKFKKIFGDCTLLVVMIIVTLVVNNVSYFVTQNTFFMIVYAIIYYFTTRKLAYPGVLDAGFIIAYLNMAPWYVLVLYIMVFLYDSLPSLFKLKVTTNLFEGDKFVGSFESAAMGTFVIDMRSYETLVNSTSLDRIKSYANSFNKYKYYTGSMGEADYRMACYAHLGKALMDYSVSRNDMLYTPPTVSVNSTLQSGLRKMAQPSGVVEPCIVRVAYGNNVLNGLWLGDEVICPRHVIASDTSRVINYENELSSVRLHNFSIAKNNAFLGVVSAKYKGVNLVLKVNQVNPNTPEHKFKSVRPGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMTLESYNAWAKTNSFTEIVSTDAFNMLAAKTGYSVEKLLECIVRLNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQSGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITTLVSVLLVAGIKHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENVNTTFLPVDMQGVMLALFCVVVFVICTIRFFTCKQSWFSLFATTIFVMFNIVKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAYYIVVYVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQSKLTEMKCTNVVLLGLLSKMHVESNSKEWNYCVGLHNEINLCDDPDAVLEKLLALIAFFLSKHNTCDLSDLIESYFENTTILQSVASAYAALPSWIAYEKARADLEEAKKNDVSPQLLKQLTKACNIAKSEFEREASVQKKLDKMAEQAAASMYKEARAVDRKSKIVSAMHSLLFGMLKKLDMSSVNTIIEQARNGVLPLSIIPAASATRLIVVTPNLEVLSKVRQENNVHYAGAIWSIVEVKDANGAQVHLKEVTAANELNITWPLSITCERTTKLQNNEILPGKLKEKAVKASATIDGDAYGSGKALMASEGGKSFIYAFIASDSNLKYVKWESNNDVIPIELEAPLRFYVDGVNGPEVKYLYFVKSLNTLRRGAVLGYIGATVRLQAGKPTEHPSNSGLLTLCAFAPDPAKAYVDAVKRGMQPVTNCVKMLSNGAGNGMAITNGVESNTQQDSYGGASVCIYCRCHVEHPAIDGLCRFKGKFVQVPTGTQDPIRFCIENEVCVVCGCWLTNGCMCDRTSIQGTTIDQSYLNECGVLVQLDLEPCNGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKHDAYYVVKRCTKSVMDHEQVCYNDLKDSGVVAEHDFFLYKEGRCEFGNVARKDLTKYTMMDLCYAIRNFDEKNCEVLKEILVTLGACNESFFENKDWFDPVENEAIHEVYARLGPIVANAMLKCVAFCDAIVEKGYIGIITLDNQDLNGNFYDFGDFVKTTPGFGCACVTSYYSYMMPLMGMTSCLESENFVKSDIYGADYKQYDLLAYDFTDHKEKLFHKYFKHWDRTYHPNCSDCTSDECIIHCANFNTLFSMTIPSTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLDTMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGVTYQTVKPGHFNKDFYDFITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFECYDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQMNLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNMLKNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHSDRFYRLSNELAQVLTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKSIQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAFKATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGVFVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDSFSVTMLEEGQDKFWSEEFYASLYEKSTVLQAAGMCVVCGSQTVLRCGDCLRRPLLCTKCAYDHVMGTKHKFIMSITPYVCSFNGCNVNDVTKLFLGGLSYYCMDHKPQLSFPLCANGNVFGLYKSSAVGSEDVEDFNKLAVSDWTNVEDYKLANNVKESLKIFAAETVKAKEESVKSEYAYAILKEVIGPKEIVLQWEASKTKPPLNRNSVFTCFQISKDTKIQLGEFVFEQSEYGSDSVYYKSTSTYKLTPGMIFVLTSHNVSPLKATILVNQEKYNTISKLYPVFNIAEAYNTLVPYYQMIGKQKFTTIQGPPGSGKSHCVIGLGLYYPQARIVYTACSHAAVDALCEKAAKNFNVDRCSRIIPQRIRVDCYTGFKPNNTNAQYLFCTVNALPEASCDIVVVDEVSMCTNYDLSVINSRLSYKHIVYVGDPQQLPAPRTLINKGVLQPQDYNVVTQRVCTLGPDVFLHKCYRCPAEIVKTVSALVYENKFVPVNPESKQCFKMFVKGQVQIESNSSINNKQLEVVKAFLAHNPKWRKAVFISPYNSQNYVARRLLGLQTQTVDSAQGSEYDYVIYTQTSDTQHATNVNRFNVAITRAKVGILCIMCDRTMYENLDFYELKDSKIGLQAKPETCGLFKDCSKSEQYIPPAYATTYMSLSDNFKTSDGLAVNIGTKDVKYANVISYMGFRFEANIPGYHTLFCTRDFAMRNVRAWLGFDVEGAHVCGDNVGTNVPLQLGFSNGVDFVVQTEGCVVTEKGNSIEVVKARAPPGEQFAHLIPLMRKGQPWHIVRRRIVQMVCDYFDGLSDILIFVLWAGGLELTTMRYFVKIGRPQKCECGKSATCYSSSQCVYACFKHALGCDYLYNPYCIDIQQWGYTGSLSMNHHEVCNIHRNEHVASGDAIMTRCLAIHDCFVKRVDWSIVYPFIDNEEKINKAGRIVQSHVMKAALKIFNPAAIHDVGNPKGIRCATTPIPWFCYDRDPINNNVRCLEYDYMVHGQMNGLMLFWNCNVDMYPEFSIVCRFDTRTRSKLSLEGCNGGALYVNNHAFHTPAYDRRAFAKLKPMPFFYYDDSNCELVDGQPNYVPLKSNVCITKCNIGGAVCKKHAALYRAYVEDYNMFMQAGFTIWCPQNFDTYMLWHGFVNSKALQSLENVAFNVVKKGAFTGLKGDLPTAVIADKIMVRDGPTDKCIFTNKTSLPTNVAFELYAKRKLGLTPPLTILRNLGVVATYKFVLWDYEAECPFSNFTKQVCSYTDLDSEVVTCFDNSIAGSFERFTTTKDAVLISNNAVKGLSAIKLQYGFLNDLPVSTVGNKPVTWYIYVRKNGEYVEQIDSYYTHGRTFETFKPRSTMEEDFLSMDTTLFIQKYGLEDYGFEHVVFGDVSKTTIGGMHLLISQVRLAKMGLFSVQEFMTNSDSTLKSCCITYADDPSSKNVCTYMDILLDDFVTIIKSLDLNVVSKVVDVIVDCKAWRWMLWCENSQIKTFYPQLQSAEWNPGYSMPTLYKIQRMCLERCNLYNYGAQVRLPDGITTNVVKYTQLCQYLNTTTVCVPHKMRVLHLGAAGASGVAPGSTVLRRWLPDDAILVDNDLRDYVSDADFSVTGDCTSLYIEDKFDLLISDLYDGSTKSIDGENTSKDGFFTYINGFIKEKLSLGGSAAIKITEFSWNKDLYELIQRFEYWTVFCTSVNTSSSEGFLIGINYLGPYCDKAIVDGNIMHANYIFWRNSTIMALSHNSVLDTPKFKCRCNNALIVNLKEKELNEMVVGLLRKGKLLIRNNGKLLNFGNHLVNVP", 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OARD1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "da2da3e1a2f54c2587913b663b119610b6aa983f8feb2489bb7192e602cba817", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MASSLNEDPEGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAVLKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVYTL", "sequence_length": 152, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "da2da3e1a2f54c2587913b663b119610b6aa983f8feb2489bb7192e602cba817", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y530.json", "taxon_id": "9606", "uniprot_accession": "Q9Y530", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis E virus genotype 3 (isolate Human/United States/US2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3729-pf12526.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12526", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3729-pf12526.yaml" } ], "pfam_ids": [ "PF00978", "PF01443", "PF01660", "PF01661", "PF05417", "PF12526" ], "protein_name": "Non-structural polyprotein pORF1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAHQFIKAPGITTAIEQAALAAANSALANAVVVRPFLSRVQTEILINLMQPRQLVFRPEVLWNHPIQRVIHNELEQYCRARAGRCLEVGAHPRSINDNPNVLHRCFLRPVGRDVQRWYSAPTRGPAANCRRSALRGLPPVDRTYCFDGFSRCAFAAETGVALYSLHDLWPADVAEAMARHGMTRLYAALHLPPEVLLPPGTYHTTSYLLIHDGNRAVVTYEGDTSAGYNHDVSILRAWIRTTKIVGDHPLVIERVRAIGCHFVLLLTAAPEPSPMPYVPYPRSTEVYVRSIFGPGGSPSLFPSACSTKSTFHAVPVHIWDXLMLFGATLXDQAFCCSRLMTYLRGISYKVTVGALVANEGWNASEDALTAVITAAYLTICHQRYLRTQAISKGMRRLEVEHAQKFITRLYSWLFEKSGRDYIPGRQLQFYAQCRRWLSAGFHLXPRXLVFDESVPCRCRTFLKKVAGKFCCFMRWLGQECTCFLEPAEGLVGDQGHDNEAYEGSEVDPAEPAHLDVSGTYAVHGHQLEALYRALNVPHDIAARASRLTATVELVASPDRLECRTVLGNKTFRTTVVDGAHLEANGPEEYVLSFDASRQSMGAGSHSLTYELTPAGLQVKISSNGLDCTATFPPGGAPSAAPGEVAAFCSALYRYNRFTQRHSLTGGLWLHPEGLLGIFPPFSPGHIWESANPFCGEGTLYTRTWSTSGFSSDFSPPEAAAPASAAAPGLPYPTPPVSDIWVLPPPSEESHVDAASVPSVPEPAGLTSPIVLTPPPPPPPVRKPATSPPPRTRRLLYTYPDGAKVYAGSLXESDCDWLVNASNPGHRPGGGLCHAFYQRFPEAFYSTEFIMREGLAAYTLTPRPIIHAVAPDYRVEQNPKRLEAAYRETCSRRGTAAYPLLGSGIYQVPVSLSFDAWERNHRPGDELYLTEPAAAWFEANKPAQPALTITEDTARTANLALEIDAATEVGRACAGCTISPGIVHYQFTAGVPGSGKSRSIQQGDVDVVVVPTRELRNSWRRRGFAAFTPHTAARVTIGRRVVIDEAPSLPPHLLLLHMQRASSVHLLGDPNQIPAIDFEHAGLVPAIRPELAPTSWWHVTHRCPADVCELIRGAYPKIQTTSRVLRSLFWNEPAIGQKLVFTQAAKAANPGAITVHEAQGATFTETTIIATADARGLIQSSRAHAIVALTRHTEKCVILDAPGLLREVGISDVIVNNFFLAGGEVGHHRPSVIPRGNPDQNLGTLQAFPPSCQISAYHQLAEELGHRPAPVAAVLPPCPELEQGLLYMPQELTVSDSVLVFELTDIVHCRMAAPSQRKAVLSTLVGRYGRRTKLYEAAHSDVRESLARFIPTIGPVRATTCELYELVEAMVEKGQDGSAVLELDLCNRDVSRITFFQKDCNKFTTGETIAHGKVGQGISAWSKTFCALFGPWFRAIEKEILALLPPNIFYGDAYEESVFAAAVSGAGSCMVFENDFSEFDSTQNNFSLGLECVVMEECGMPQWLIRLYHLVRSAWILQAPKESLKGFWKKHSGEPGTLLWNTVWNMAIIAHCYEFRDFRVAAFKGDDSVVLCSDYRQXRNAAALIAGCGLKLKVDYRPIGLYAGVVVAPGLGTLPDVVRFAGRLSEKNWGPGPERAEQLRLAVCDFLRGLTNVAQVCVDVVSRVYGVSPGLVHNLIGMLQTIADGKAHFTENIKPVLDLTNSIIQRVE", 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"ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pmp3-pf01679.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01679", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pmp3-pf01679.yaml" } ], "pfam_ids": [ "PF01679" ], "protein_name": "PMP3 family protein YqaE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFWRIVITIILPPLGVLLGKGFGWAFIINILLTLLGYIPGLIHAFWVQTRD", "sequence_length": 52, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b96badde6ac00b04cf0cbe2fd1af1a69d69eec2df0d628076bb652cd55182a0c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AE42.json", "taxon_id": "83333", "uniprot_accession": "P0AE42", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/upf0057.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P14359", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01679" ], "protein_name": "Protein SNA3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a0386ec663d11e8d8e53db69518dd0184528587acf310d2603a8f9c2f8d6f4c7", "sequence_version": 3, 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/upf0057.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01309", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/upf0057.yaml" } ], "pfam_ids": [ "PF01679" ], "protein_name": "Protein SNA2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHARDWFLVFIAIFIPPLAVWLKRGFFTKDLLINFLLFLLGFFPGLIHALYVISCHPYEENEARYSHLSSSDDNYGSLA", "sequence_length": 79, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d5f2a0efdec23281ad8eb7f650a0337d460a7226c8f4f6086d211666e6ac61fb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P56508.json", "taxon_id": "559292", "uniprot_accession": "P56508", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pmp3-pf01679.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01679", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pmp3-pf01679.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/upf0057.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01309", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/upf0057.yaml" } ], "pfam_ids": [ "PF01679" ], "protein_name": "Plasma membrane proteolipid 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSAKIINIILSLFLPPVAVFLARGWGTDCIVDIILTILAWFPGMLYALYIVLQD", "sequence_length": 55, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "501341653286a60a6325ebbe0e2e31b8384a3e105a6a6b863627dc5425004940", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P87284.json", "taxon_id": "559292", "uniprot_accession": "P87284", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/upf0057.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01309", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/upf0057.yaml" } ], "pfam_ids": [ "PF01679" ], "protein_name": "Protein SNA4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCCYCVCCTVSDFILYIVAFFFPPAAVLLRSGPCSSDFLLNVLLTLLGFLPGMLHAFYYITITSPLRNAEYVYYYQQGWVDSERNVPSNRPQNSQTPQNRPQQGSSARNVYPSVETPLLQGAAPHDNKQSLVESPPPYVP", "sequence_length": 140, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "20cd85f4d028699b4999ae177b78541417f38410e6edcc2e4ac93c5cdeff0aad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q07549.json", "taxon_id": "559292", "uniprot_accession": "Q07549", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0db4f6d26f8382228c98b4b1cff0d748e7e0c84a6d5b87e52a27a0e391dc4be4", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNPVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAESSLWLTLFNDFIHSFRMQVFFVISGYFSYMLFLRYPLKKWWKVRVERVGIPMLTAIPLLTLPQFIMLQYVKGKAESWPGLSLYDKYNTLAWELISHLWFLLVLVVMTTLCVWIFKRIRNNLENSDKTNKKFSMVKLSVIFLCLGIGYAVIRRTIFIVYPPILSNGMFNFIVMQTLFYLPFFILGALAFIFPHLKALFTTPSRGCTLAAALAFVAYLLNQRYGSGDAWMYETESVITMVLGLWMVNVVFSFGHRLLNFQSARVTYFVNASLFIYLVHHPLTLFFGAYITPHITSNWLGFLCGLIFVVGIAIILYEIHLRIPLLKFLFSGKPVVKRENDKAPAR", "sequence_length": 385, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0db4f6d26f8382228c98b4b1cff0d748e7e0c84a6d5b87e52a27a0e391dc4be4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75920.json", "taxon_id": "83333", "uniprot_accession": "P75920", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/acyltransferase-3-domain-ipr002656.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/acyltransferase-3-domain-ipr002656.yaml" } ], "pfam_ids": [ "PF01757" ], "protein_name": "Inner membrane protein YcfT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKQKELWINQIKGLCICLVVIYHSVITFYPHLTTFQHPLSEVLSKCWIYFNLYLAPFRMPVFFFISGYLIRRYIDSVPWGNCLDKRIWNIFWVLALWGVVQWLALSALNQWLAPERDLSNASNAAYADSTGEFLHGMITASTSLWYLYALIVYFVVCKIFSRLALPLFALFVLLSVAVNFVPTPWWGMNSVIRNLPYYSLGAWFGATIMTCVKEVPLRRHLLMASLLTVLAVGAWLFTISLLLSLVSIVVIMKLFYQYEQRFGMRSTSLLNVIGSNTIAIYTTHRILVEIFSLTLLAQMNAARWSPQVELTLLLVYPFVSLFICTVAGLLVRKLSQRAFSDLLFSPPSLPAAVSYSR", "sequence_length": 357, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4eadcd457f12a93c622f7117956f591b7da7200c7e34509b50414c9fee877354", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75955.json", "taxon_id": "83333", "uniprot_accession": "P75955", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/acyltransferase-3-domain-ipr002656.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/acyltransferase-3-domain-ipr002656.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nose-resistant-to-fluoxetine-protein-n-terminal-ipr006621.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006621", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nose-resistant-to-fluoxetine-protein-n-terminal-ipr006621.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nrf-pf20146.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20146", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nrf-pf20146.yaml" } ], "pfam_ids": [ "PF01757", "PF20146" ], "protein_name": "Nose resistant to fluoxetine protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGNMRRLLIFAVLVILTVISNSKSSYKYDGSLFSSKELDYDETDTKAMGSVFSRYMSDSDAQLILDLDFFRHFFNYAEAYRDGAEEGNLELMKYAVEMVEKLKSFDISMACVGDMMHLAWTGVEYATHVEEHKNCSDCKCTPLFQQKKSERHWIFNVFDAMGKVPAGIMSGNNLWVGSWSTCRKIDVVKNAQGQKWKGQYCLATIDAYERDNPLVYFGNMMSGPPDKHCYDKTVKNVTDDGFCFALFPVLKFGVCMPNTCTNHDVKQMLSFAIRATEGAVGTKSVCNVDVECRAESYSDAMSENGLAMFALYLLIATVVLVTFGTLYDLFIVSKAPQDEKNSSAFNHPFIKFILAFSMYTNGSEILQSKKNDREINSLHGVRFLSMCWIILGHTYYYIGTSLTTDNLVPTLINFPKQFHTQIIVQAPLAVDSFFFLSGMLAAFSFFKKTMKADPNHPPKLSAFNWQTWPMYYYKRYIRITPTYIIVMLFDVTLFTYISNGPFWRPIERQGCSIAWWTNLIYLNNFLLQDQECCMGWTWYLANDMQFHIFLMPLLVIVFLKWGMKVGLGLSTGLIALSSLIRLIITQIYGYPPAPILTAKLQIVYQLNDYWNDVYVRPYIRCTPFIVGIVVAYLLNAWTTREQKDLKIKLERRTVIICWCTSTVLGLYSVFGLYWFAKTGDISKPWEILYTIFGTPAYALALGWVVFACTTGNGGPVDTILSWRLFVPLSKITFCAYLLHPIMLQIYNLSRPQPFHFTTFIQMIRYTVEAVFASYTIAFFFSLAFEKPLNKIDEMLFNSKKMMNGENGNTTEMVPLNKIRNSD", "sequence_length": 822, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d6d3926e0b266eff0ed2e77ea4243d5e1c980097b5b463364c3cf446a81cf29f", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q09225.json", "taxon_id": "6239", "uniprot_accession": "Q09225", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain NCTC 8325 / PS 47)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acyl-transf-3-pf01757.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acyl-transf-3-pf01757.yaml" } ], "pfam_ids": [ "PF01757" ], "protein_name": "O-acetyltransferase OatA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTKDFKRLEKMYSPRYLPGLDGLRAFAVIGIIIYHLNAQWLSGGFLGVDTFFVISGYLITSLLISEYYRTQKIDLLEFWKRRLKRLIPAVLFLICVVLTFTLIFKPELIIQMKRDAIAAIFYVSNWWYISQNVDYFNQFAIEPLKHLWSLAIEEQFYLLFPLVITFLLHRFKPRNIIQTLFIVSLISLGLMIVIHFITGDNSRVYFGTDTRLQTLLLGCILAFIWPPFALKKDISKKIVVSLDIIGISGFAVLMTLFFIVGDQDQWIYNGGFYIISFATLFIIAIAVHPSSLFAKFLSMKPLLIIGKRSYSLYLWHYPIIVFVNSYYVQGQIPVYVYIIEILLTALMAEISYRFIETPIRKKGFKAFAFLPKKKGQFARTVLVILLLVPSIVVLSGQFDALGKQHEAEKKEKKTEFKTTKKKVVKKDKQEDKQTANSKEDIKKSSPLLIGDSVMVDIGNVFTKKIPNAQIDGKVGRQLVDATPIVKSQYKDYAKKGQKVVVELGTNGAFTKDQLNELLDSFGKADIYLVSIRVPRDYEGRINKLIYEAAEKRSNVHLVDWYKASAGHPEYFAYDGIHLEYAGSKALTDLIVKTMETHATNKK", "sequence_length": 603, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d7597d795a65b0409056cebcb56c87ecffd8c8aa0731361346cf1a1c74a25757", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2FV54.json", "taxon_id": "93061", "uniprot_accession": "Q2FV54", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nose-resistant-to-fluoxetine-protein-n-terminal-ipr006621.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006621", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nose-resistant-to-fluoxetine-protein-n-terminal-ipr006621.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nrf-pf20146.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20146", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nrf-pf20146.yaml" } ], "pfam_ids": [ "PF01757", "PF20146" ], "protein_name": "O-acyltransferase like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMALTSLACLHALFPFVSPARNISLKCMQDTDEFLSDLNSLKPKEYALRMYDSVGKLGSNVLTGNVDRLGSYSECLSTRSPKGSFRGQYCKLHILQDGTDYSVGVCVPDSCAEEDVTMMSQLGTLKFRNTSFLEPSLSLFTKDSSSSCEVVARCAAGAMSPDMFASVCLFITLLGLVLPVAGTVYMVARDWGLDLRTSSVHGTPPTSCESLPLRNMESNRQRSRASCQVQLPPPGAPSRGRRFLGAVDEVLQCFSWQKNMPAICSPELPGGTCRTLNGIRVLSLLWVISGHTSQMTAWLSLDNVLEWKSRVPENPLYLYSRSGPFYLGVDTFFLISGWLSARSFLKMHQNTSTGITPKVILRYFLKRFTRLQLLHMYSVCLLVGFFSFVPWGPVWEVAQFHWDNCREVWWTNLLLLNNFLSVQNACNGWTWYLASDFQFHLTTPLIFFVHGKSKRVFVLLGGLLFLASSTATTLLTLAYKLPVASPAAASEHGTVLYFSEYYTKPYCRCGPFLVGLFLSMFMHSDHPTDILKTTVQAMLGWTWSLLTLFAVVALAYVLDDTSPTSSVAAAIYQALHRTLWAAAVGWVIFACQEGYGGPVKRMLSWGIWSLPASISYACYLVHPIVIILYNGLQETLIHYTDTNMLYLFFGHCVLTFLGGLVLTLFIERPWQELKWGLWGPEPARP", "sequence_length": 685, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "744f4b155aa9e8a5d9f4a2a0bf8eaa3222b2977ad8fae7b1493910f3c1749bc3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BML2.json", "taxon_id": "10090", "uniprot_accession": "Q8BML2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterococcus gallinarum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acyl-transf-3-pf01757.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acyl-transf-3-pf01757.yaml" } ], "pfam_ids": [ "PF00842", "PF01168", "PF01757" ], "protein_name": "Serine/alanine racemase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNKGIDQFRVIAAMMVVAIHCLPLHYLWPEGDILITLTIFRVAVPFFFMISGYYVFAELAVANSYPSRQRVFNFIKKQLKVYLLATLMFLPLALYSQTIGFDLPVGTLVQVLLVNGILYHLWYFPALITGSLLLTSLLIHVSFKKVFWLAAGLYLIGLGGDSWFGLIQQTPIEPFYTAVFHLLDGTRNGIFFTPLFLCLGVLVRKQSEKRSLSKTALFFLISLIGLLIESAYLHGFSIPKHDSMYLFLPVVLFFLFPLILRWHPHRTWKHPGQLSLWLYLLHPYTIAGTHFLSQKISILQNNLINYLVVLILTIGFICLFLRQKHSWFRHKQTTPVKRAVKEFSKTALLHNLQEIQRIISPKTKVMAVVKADAYGCGAKEVAPVLEQAGIDFFAVATIDEGIRLRKNAVKSPILVLGYTSPKRIKELRRYSLTQSIISEGHAVALSQRKVAIDCHLAIDTGMHRLGVTPTIDSILSIFDLPFLTISGVYSHLGSADRLNPDSMIRTQKQIACFDQILLELDQRQISYGITHLQSSYGILNYPDLNYDYVRPGILLTGSLSDTNEPTKQRVSLQPILTLKAQLITKRVVAKGEAIGYGQTAVANQETTVGVVSIGYCDGLPRSLSNQEFCLSYRGQSLPQIGLICMDMLLIDLSHCPTIPIESEIEILTDWSDTAEQVQTITNELICRIGPRVSARIK", "sequence_length": 698, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "971110b1ef2a9ca137a4850d921ffc10123985a96fc470a57467c3a7c23058d6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9X3P3.json", "taxon_id": "1353", "uniprot_accession": "Q9X3P3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/acyltransferase-3-domain-ipr002656.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/acyltransferase-3-domain-ipr002656.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acyl-transf-3-pf01757.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acyl-transf-3-pf01757.yaml" } ], "pfam_ids": [ "PF01757" ], "protein_name": "Regulator of hypoxia-inducible factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSSPHTHTLIIMERLSEVRLYSSPMTSVLNSNLSSCLTNAFIPDTVRMASSPLLAWMTLVVIGTLAPVSVFSCLSLKRSVKELLTERSSKLDVLDIFRFVAILWVMLNHTGSEGRIDILDRLPSADAFKSAMHDHPIFGALMGNSALGVEIFLVLSGLLAARSWLRKADEPFFQHWKSFIARRLLRLAPSMFIFVYIAAGPIMNALLPRYSSSMVSACGFWGILSHVTFTSNWQSTPTCMGYLWYLGLDMQLYMVAPIFLNLLHKFPKRGMALTITTIIASMVIRAGYCTAYGTCNQSDVDIPFISYPGQDAETLKSIYAGLWDMYSRPYTKCGPFLIGLLLGYITVSSKYIMVSTTSKTLFRSSLIVAIATIYAILPEYWNPNAGNTLYNTVYTAVFRSVFAMAISGMIAALYFRQEYRPTNPIFAMLAKLTYNAYLLHMPVVYIFNWLPFLQAATSPIHLLLVLPFVAILSFIAALIFYLFIEAPIGHLTSQYATRLGL", "sequence_length": 502, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b0922411fd6451d34df528ecfeedf4b0af0ff20b2dbcc59e9e631c2135acfda", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9XVW1.json", "taxon_id": "6239", "uniprot_accession": "Q9XVW1", "uniprot_release": "2026_03" } ], "pfam_id": "PF01757", "short_name": "Acyl_transf_3", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 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"section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/homocysteine-biosynthesis-enzyme-sulfur-incorporation-ipr002708.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hcybio-pf01837.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01837", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hcybio-pf01837.yaml" } ], "pfam_ids": [ "PF01837" ], "protein_name": "Uncharacterized protein MJ1681", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKELKVITIDELKKYIRNNEEDKIEEVDVVTSATCGIMSGTAGIFHIPFNEVFKRAEEIYLNDIKGVVGICPNEFLGKVDAIFYGEVGFLFKDLVKGKVVEAKAISEGKIYKNEITIDDLPTAKMIGTRMAFKNYTAITNLSDEEVNTIFHRLPLKKGEASFSGCGMLNPLENMVIKDEKDVVGKKALLNGAEAIILGFGTRASIEKPNLMMSADMKDMDAYYLGGFVTSNGIEIYNTIAVPIKVDEHKEALKKLDKDITLPLVNIFGREIIDIGSYAEVWENVDLRPKIYQDKCKNCRECLVEKYCPTFAIKRENGKIKITEDCFGCGVCNICPYGVFKTKLGSVCGIPITCRQSDRKRALKLAKELKKKIERGEFKI", "sequence_length": 380, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2720db223d58f5f3d8cec4b7ff25bc42747461d41ad2bb825917efdb5e038965", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q59075.json", "taxon_id": "243232", "uniprot_accession": "Q59075", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hcybio-pf01837.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01837", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hcybio-pf01837.yaml" } ], "pfam_ids": [ "PF00571", "PF01837" ], "protein_name": "L-aspartate semialdehyde sulfurtransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVEKSVHEINKKIEDGSVNVVTAEEMVGIVENLGVEGAAREVDVVTTGTFGAMCSSGLMLNLGHSEPPIKIQKLWFNNVEAYSGLAAVDAYLGAAQISDTRGIQYGGAHVIEDLLRGKELDVHATSYGTDCYPRKVLDTRITLDDLNEAVLLNPRNAYQKYAAATNSSKRILNTYMGELLPNFGNVTYSGAGVLSPLSNDPDYETIGMGTRIFMGGAQGYIIGNGTQHSPSSSFGTLMLKGNLKEMSSDYLRAASFAGYGTTLYMGIGIPIPILNEKIAASTAVRDEDIFTDILDYAVGSRDKPVIKQVNYAELRSGSIELEGKNTPTSSLSSFKNARKIANELKEWVKHGKFFVSMPVEKLSREGSAKSMKQTQAVPLVKDVMADFIVTIKKNQTVQDAAKKIWENSFNHLAVVSDTGELVGILTAWDISKAVAENIFDSVESVMTKKVLTCAPNEPVDLAARRLDRYGVSAMPVIDTQRKVLGIITSDNISKLLARRY", "sequence_length": 500, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b5da7f6596d6234bff105339b4671a159ecf2214d1295eec1c853c2bbd1391c3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TPT4.json", "taxon_id": "188937", "uniprot_accession": "Q8TPT4", "uniprot_release": "2026_03" } ], "pfam_id": "PF01837", "short_name": "HcyBio", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermus thermophilus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bpsa-c-pf01861.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01861", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bpsa-c-pf01861.yaml" } ], "pfam_ids": [ "PF01861" ], "protein_name": "N(4)-bis(aminopropyl)spermidine synthase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKEALVQVAEEVRRATGLPVGWRDVERTLGALRATRDLWEAVRLSRVPLRFLVPIWEGLARRGLLRVEEGLDLLAEVPAPRPGEAACPACEGRGLVGERLPGRAAERFLAWAKERPEAIQDFDQGYVTPESTLARVALAWNWGDLEGKEVLVLGDDDLTGLAAALTGLPKRVVVLDADPRIVRFLERAAKAEGLPLEAHVHDLREPLPEAWVHAFHTFFTDPVEGPLGLQAFVGRGLLALEGEGCAGYVGLTHVEASLAKWADFQRFLLENGAVITELRDGFHVYENWGYIEQMRAWPWLPVKRRPEKPWYTSALIRLELLRRADLENARVEGDLQDEEATY", "sequence_length": 343, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6b93dc6be953848e6e23554b5d79db7b0f6604e2d5527e83e5baee8425401bf8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P25125.json", "taxon_id": "274", "uniprot_accession": "P25125", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/n-4-bis-aminopropyl-spermidine-synthase-c-terminal-ipr002723.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002723", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/n-4-bis-aminopropyl-spermidine-synthase-c-terminal-ipr002723.yaml" } ], "pfam_ids": [ "PF01861" ], "protein_name": "Uncharacterized protein MJ0675", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIIGKIGKGKVEVNEKTKFSILLNNVAKKADIAEGKRAVEDIIRVIYRHQPISTKKIAQKTRLPLPIVAKVRTILEREKILKRTERGAELTDLGKEFAENFLKLKYKKSLTCKTCNGRGIVLDEFFEDILNKVRVWAKRRPLVDTTIDQSFATPETSTYRAALMYERGDLEGKRILFVGDDDLTSLPTALTNMAEEIAVVDIDERILKLIEKFSQKEGVKIKTIKHDLRNPLPQDLKERFDVISTDPPYTVDGLKLFLSRGIEALGKEGIAYLSYSHKPIDEWLSIQKAITNMGFVISELIPNFNYYEGSEIIANTTFIARLVGKNLKINIGDTEKIYTGLVKPVIRYYKCLKCGKIHKVGEEVKKVEDLVCECGGKKFKMIKREKLKNE", "sequence_length": 391, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "933441e5c8a43cd016f2e99d7d074284c12531aa014f027174233f135757cff4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q58088.json", "taxon_id": "243232", "uniprot_accession": "Q58088", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/transferase-activity-transferring-alkyl-or-aryl-other-than-methyl-groups-go0016765.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016765", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/transferase-activity-transferring-alkyl-or-aryl-other-than-methyl-groups-go0016765.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/polyamine-biosynthetic-process-go0006596.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0006596", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/polyamine-biosynthetic-process-go0006596.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/n-4-bis-aminopropyl-spermidine-synthase-c-terminal-ipr002723.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002723", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/n-4-bis-aminopropyl-spermidine-synthase-c-terminal-ipr002723.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bpsa-c-pf01861.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01861", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bpsa-c-pf01861.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q58669", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01861" ], "protein_name": "N(4)-bis(aminopropyl)spermidine synthase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "04150bef0702f7ba70fa3e7ec63d8c23a5bb66322948950bdb3be23fa3607292", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MERILEKVRAKSEIPVYDKSIENVLSAILTTNDFWKIVDLSEEPLPLVADIIRILEEEGLVKISNGIEFTEKGNEFIKSYGIGAKDNSVCECCEGRGVSLKNYQDLLERFKEIVKNRPMPKHEYDQGFVTPECTISRIALMNSRGDLFNKDVLVLGDDDLTSIALMLSNLPKKIVVVDIDDRLINFIKEVAEQLNYKNIEVITLDLRKPLPEKYSRAFDTFITDPPETVYAVKTFIGRGISALKGERRAGYFGITRRESSLDKWREIQRTLINDFNVVITDIIRNFNHYVNWGYEEETRAWKLAPVKKKPEDIWYKSYMFRIETLKDSRGFEEEVDVGDELYNDAESSTT", "sequence_length": 350, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "04150bef0702f7ba70fa3e7ec63d8c23a5bb66322948950bdb3be23fa3607292", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58669.json", "taxon_id": "243232", "uniprot_accession": "Q58669", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bpsa-c-pf01861.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01861", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bpsa-c-pf01861.yaml" } ], "pfam_ids": [ "PF01861" ], "protein_name": "N(4)-bis(aminopropyl)spermidine synthase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MREIIERVKEKTTIPVYERTIENVLSAIQASGDVWRIVDLSEEPLPLVVAVVTALYELGYVAFENNQVILTRKGKELVEKYGIGPRADYTCSHCQGRTVEIDAFSELLEQFKEITRDRPEPAHQFDQAYVTPETTVARVALMHSRGDLENKEVFVLGDDDLTSVALMLSGLPKRIAVLDIDERLTKFIEKAADEIGYENIEIFTFDLRKPLPDYALHKFDTFITDPPETVEAIRAFVGRGIATLKGPGCAGYFGITRRESSLDKWREIQRVLLNEFGVVITDIIRNFNEYVNWGYVEETRAWRLLPIKVKPSYNWYKSYMFRIQTLEGSKGFEDEITVGQELYDDEESSTT", "sequence_length": 351, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5635ccd8de315c46fddc15398468b045546069c307f7901566bacfc815898278", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5JIZ3.json", "taxon_id": "69014", "uniprot_accession": "Q5JIZ3", "uniprot_release": "2026_03" } ], "pfam_id": "PF01861", "short_name": "BpsA_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/arginine-decarboxylase-activity-go0008792.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008792", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/arginine-decarboxylase-activity-go0008792.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/pyruvoyl-dependent-arginine-decarboxylase-tigr00286.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00286", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/pyruvoyl-dependent-arginine-decarboxylase-tigr00286.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pvlargdc-pf01862.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01862", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pvlargdc-pf01862.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"MRLKLSLTPKQDFSFDKINKHTIQGFIYSLLKDTEFGEMHNQPRFKFWCFSDIFPPNDFVKGEDKYLLISSPREEFINVLYERLDNLEEVNLNNFKFEVSELKKFDLKVKNKFITGSPIVLYKDKDRGEYIKFYDDDFDLMFFVQRLQDNAVKKYKAFYNEEPVLNGFIFDRISPRVRNGRVDVYVRIAKKGREFLVVGTTWKLLEKIKIRKEERKFYKFIMDCGLGEKNSLGFGFINPIK", "sequence_length": 241, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e72746465b97f1e8802f56e466f8e5e24fa9973fc34c6ff0adec64a24e626d9b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58631.json", "taxon_id": "243232", "uniprot_accession": "Q58631", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cas-cas6-c-pf01881.yaml", 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"MRFLIRLVPEDKDRAFKVPYNHQYYLQGLIYNAIKSSNPKLATYLHEVKGPKLFTYSLFMAEKREHPKGLPYFLGYKKGFFYFSTCVPEIAEALVNGLLMNPEVRLWDERFYLHEIKVLREPKKFNGSTFVTLSPIAVTVVRKGKSYDVPPMEKEFYSIIKDDLQDKYVMAYGDKPPSEFEMEVLIAKPKRFRIKPGIYQTAWHLVFRAYGNDDLLKVGYEVGFGEKNSLGFGMVKVEGNKTTKEAEEQEKITFNSREELKTGV", "sequence_length": 264, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3861cd862c4da5f2f4967bed2a1f4a0ef1a9c6c0fa65b70f7f2d1109127e9bf4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8U1S4.json", "taxon_id": "186497", "uniprot_accession": "Q8U1S4", "uniprot_release": "2026_03" } ], "pfam_id": "PF01881", "short_name": "Cas_Cas6_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium avium", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf58-pf01882.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf58-pf01882.yaml" } ], "pfam_ids": [ "PF01882" ], "protein_name": "Uncharacterized protein MAV169", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTRVPARSGRHDEQTLLRTIATTPRAPVGVRGDLATAIDALRRPERRRGMAVIISDFLGPINWQRPLGAIAARHEVLAIEVLDPRDVELPDIGDVVLQDAETGVTREFTIDAQLRDDFAKAAAAHRADVARTIRSCGAPILTLRTDRDWIADIVRFVKSRRRGALAGRQ", "sequence_length": 169, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "59fdc574940b0749385ebf244216ef69acb139794c732fff62877101bac39f13", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O07394.json", "taxon_id": "1764", "uniprot_accession": "O07394", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf58-ipr002881.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf58-ipr002881.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf58-pf01882.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf58-pf01882.yaml" } ], "pfam_ids": [ "PF01882" ], "protein_name": "Uncharacterized protein YeaD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKKWQWLVYGWKLIILTLLTAAVFSYAMFQGGFVSWFLFYAFLPFVLYAGLLALYPLRSFQASRQMDKTQLHAGDRLGVTVTLRRKLPFPLMYMVIEDCLPEGIESLNRDGAAAKRLVFPWFKRSMTMSYELARVPRGEHHFHSVRVRTGDVLGLIEKTAFFELDDTLFVYPFYQRFSYQVNERHQEDGVSGSSPIHQHHSSVAASVRNYQPGDRFAALDWKTSARRSQLMTKEFEPSRSKNLFLLMDRFSSDAFEEVVSVTASILHSVLKNGAGAGLASIGKEKNIFPIQEGDQHFKHMLRHLAIAHCDAADPISRYAREELGKPSVRQADQVVVTGQLTEDMLHLAEIGGGRVTVILAKEKDAELSQAENVMIERMMKRQIRVRIMRGGRVSRVV", "sequence_length": 398, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a07e9f143b0c95c965c8e37e167b090193df15004610d5cc762ddeb989248fef", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P94475.json", "taxon_id": "224308", "uniprot_accession": "P94475", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf58-pf01882.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf58-pf01882.yaml" } ], "pfam_ids": [ "PF01882" ], "protein_name": "Uncharacterized protein MT1527", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTESKAPAVVHPPSMLRGDIDDPKLAAALRTLELTVKQKLDGVLHGDHLGLIPGPGSEPGESRLYQPGDDVRRMDWAVTARTTHPHVRQMIADRELETWLVVDMSASLDFGTACCEKRDLAVAAAAAITFLNSGGGNRLGALIANGAAMTRVPARTGRQHQHTMLRTIATMPQAPAGVRGDLAVAIDALRRPERRRGMAVIISDFLGPINWMRPLRAIAARHEVLAIEVLDPRDVELPDVGDVVLQDAESGVVREFSIDPALRDDFARAAAAHRADVARTIRGCGAPLLSLRTDRDWLADIVRFVASRRRGALAGHQ", "sequence_length": 317, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "22dc7a538345c68db37264d78e0947c29ac4df3afd261a716a13689ef9957005", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLX4.json", "taxon_id": "83331", "uniprot_accession": "P9WLX4", "uniprot_release": "2026_03" } ], "pfam_id": "PF01882", "short_name": "DUF58", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 11, "discovery_scanned": true, "example_count": 11, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-10-250-1280-6-10-250-1280.yaml" } ], "pfam_ids": [ "PF01883" ], "protein_name": "MIP18 family protein YHR122W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEFLNENPDILEENQLPTRKEDSTKDLLLGGFSNEATLERRSLLLKIDHSLKSQVLQDIEVLDKLLSIRIPPELTSDEDSLPAESEDESVAGGGKEEEEPDLIDAQEIYDLIAHISDPEHPLSLGQLSVVNLEDIDVHDSGNQNEMAEVVIKITPTITHCSLATLIGLGIRVRLERSLPPRFRITILLKKGTHDSENQVNKQLNDKERVAAACENEQLLGVVSKMLVTCK", "sequence_length": 231, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2df3692d3a8fb44a184ebc1dcb5cae1911f6c39999f7c09ab1b376b5a740d04b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38829.json", "taxon_id": "559292", "uniprot_accession": "P38829", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/1-2-phenylacetyl-coa-epoxidase-subunit-paad-tigr02159.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR02159", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/1-2-phenylacetyl-coa-epoxidase-subunit-paad-tigr02159.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/paad-zinc-beta-ribbon-domain-ipr056572.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/paad-zinc-beta-ribbon-domain-ipr056572.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zn-ribbon-paad-pf23451.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23451", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zn-ribbon-paad-pf23451.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P76080", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01883", "PF23451" ], "protein_name": "Putative 1,2-phenylacetyl-CoA epoxidase, subunit D", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c0b74d2d1b46301e01fc6af984a9cb4e3cdad91d4ab0a4bc89c62ae96b7339b0", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQRLATIAPPQVHEIWALLSQIPDPEIPVLTITDLGMVRNVTQMGEGWVIGFTPTYSGCPATEHLIGAIREAMTTNGFTPVQVVLQLDPAWTTDWMTPDARERLREYGISPPAGHSCHAHLPPEVRCPRCASVHTTLISEFGSTACKALYRCDSCREPFDYFKCI", "sequence_length": 165, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c0b74d2d1b46301e01fc6af984a9cb4e3cdad91d4ab0a4bc89c62ae96b7339b0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76080.json", "taxon_id": "83333", "uniprot_accession": "P76080", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gamma-butyrobetaine-hydroxylase-like-n-terminal-ipr010376.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gamma-butyrobetaine-hydroxylase-like-n-terminal-ipr010376.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fes-assembly-p-pf01883.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fes-assembly-p-pf01883.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/gbbh-like-n-terminal-domain-superfamily-ipr038492.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038492", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/gbbh-like-n-terminal-domain-superfamily-ipr038492.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-30-2020-30-3-30-2020-30.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.2020.30", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-30-2020-30-3-30-2020-30.yaml" } ], "pfam_ids": [ "PF01883", "PF06155", "PF10609" ], "protein_name": "Fe-S cluster assembly factor HCF101, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLLHPQSLRHPSFEIQTQRRSNSTTRLLLSHKFLHSQASIISISRTRILKRVSQNLSVAKAASAQASSSVGESVAQTSEKDVLKALSQIIDPDFGTDIVSCGFVKDLGINEALGEVSFRLELTTPACPVKDMFENKANEVVAALPWVKKVNVTMSAQPAKPIFAGQLPFGLSRISNIIAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVNPESRILEMNPEKKTIIPTEYMGVKLVSFGFAGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVAPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCVAVVENMCHFDADGKRYYPFGKGSGSEVVKQFGIPHLFDLPIRPTLSASGDSGTPEVVSDPLSDVARTFQDLGVCVVQQCAKIRQQVSTAVTYDKYLKAIRVKVPNSDEEFLLHPATVRRNDRSAQSVDEWTGEQKVLYGDVAEDIEPEDIRPMGNYAVSITWPDGFSQIAPYDQLEEIERLVDVPPLSPVEV", "sequence_length": 532, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "171f62b3d041f1e7b74c84135364b2b4008f7c1f8edb414f196a1bfaa71f75de", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6STH5.json", "taxon_id": "3702", "uniprot_accession": 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"section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/diphthami-syn-2-n-pf01902.yaml" } ], "pfam_ids": [ "PF01042", "PF01902", "PF28410" ], "protein_name": "Diphthine--ammonia ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKVLGLISGGKDSCFNLMHCVSLGHEVVALANLHPEDGKDEIDSFMYQSVGHDVIPLYAECFDLPLYREKIGGQSINQNLDYQFTEKDETEDLYRLIKRVLTNHPDLEAVSTGAILSTYQRTRVENVCKRLGLKSLSFLWQKDQEKLLNDMVVSGLNAILIKVAAIGLTRKDLGKSLAEMQDKLLTLNKKFELHPCGEGGEYETLVLDCPLFKKRIVLTDKEVVEHSSGEVCYLKVKACVKDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELIDDQEETPTSLIPIPLRESAFQQKKGSFLVLGNVVATKGSYNTFQGEAESAINNLNELLGTYGYSNKNVYFVTVILSSMSKFAEFNSVYNKYFDFTNPPSRSCVAAPLASEYRIVMSCIVGDVTEKRALHVQGQSYWAPANIGPYSQSICANGVVFISGQIGLIPSVMELKLHDKIFEMVLALQHANRVAKAMRVGSLIACLAYVCDSRDADCVVKIWSEYTKNTGESSPVLVALVDALPRNASVEWQLLYNDSSCDVPLLSSLVTNQTLFGSDTAWDVALLNQNGLRMESSFIHHEHPSAYAIVLNNAFPNSQLLHVRYTARDQNV", "sequence_length": 606, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "62687385f850d3b8a48a37e367d2688b7176d330afee645247b77837caeec6c2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9USQ7.json", "taxon_id": "284812", "uniprot_accession": "Q9USQ7", "uniprot_release": "2026_03" } ], "pfam_id": "PF01902", "short_name": "Diphthami_syn_2_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf72-pf01904.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf72-pf01904.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/upf0759-superfamily-ipr036520.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036520", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/upf0759-superfamily-ipr036520.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-upf0759-3-20-20-410.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.20.20.410", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-upf0759-3-20-20-410.yaml" } ], "pfam_ids": [ "PF01904" ], "protein_name": "UPF0759 protein YunF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIYIGLTGWGDHDSIYPPKTASQKKLQAYSSHFPIVELDASFYAIQPARNNEKWVKETPETFQFIVKAYQGMTGHQRGEIPFDSKEEMFDAFKVSLTPYLHSNKLAMVLFQFPPWFDCKKENVAYLRWCKHQMGDIPCALEFRNRSWFSPPFYEQTLSFMKAEGWIHSVCDEPQIGEGSVPTVLRATDENKTLVRFHGRNKQGWMKPDGGKNWREVRYLYRYNQQELEDWKKHLNELQQQCKDVFVLFNNNSGGDAADNGKQMLELLDIEYSGLAPRQLDLF", "sequence_length": 282, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8fd4faaffd2aba5552a7d9d8b3c215e85a0216e990912bce986b26b8525195e0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O32135.json", "taxon_id": "224308", "uniprot_accession": "O32135", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf007637.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007637", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf007637.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf72-pf01904.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf72-pf01904.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/upf0759-superfamily-ipr036520.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036520", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/upf0759-superfamily-ipr036520.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-upf0759-3-20-20-410.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.20.20.410", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-upf0759-3-20-20-410.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P37348", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01904" ], "protein_name": "UPF0759 protein YecE", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4bc4b21a20f1b18f9ea33f0da3509cefd3e58c01bd49c007966f1d2e33dcde9c", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MIYIGLPQWSHPKWVRLGITSLEEYARHFNCVEGNTTLYALPKPEVVLRWREQTTDDFRFCFKFPATISHQAALRHCDDLVTEFLTRMSPLAPRIGQYWLQLPATFGPRELPALWHFLDSLPGEFNYGVEVRHPQFFAKGEEEQTLNRGLHQRGVNRVILDSRPVHAARPHSEAIRDAQRKKPKVPVHAVLTATNPLIRFIGSDDMTQNRELFQVWLQKLAQWHQTTTPYLFLHTPDIAQAPELVHTLWEDLRKTLPEIGAVPAIPQQSSLF", "sequence_length": 272, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4bc4b21a20f1b18f9ea33f0da3509cefd3e58c01bd49c007966f1d2e33dcde9c", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P37348.json", "taxon_id": "83333", "uniprot_accession": "P37348", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf72-pf01904.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf72-pf01904.yaml" } ], "pfam_ids": [ "PF01904" ], "protein_name": "UPF0759 protein YecE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIYIGLPQWSHPKWVRLGITSLEEYARHFNCVEGNTTLYALPKPEVVLRWREQTTDDFRFCFKFPATISHQAALRHCDDLVTEFLTRMSPLAPRIGQYWLQLPATFGPRELPALWHFLDSLPGEFNYGVEVRHPQFFAKGEEEQTLNRGLHQRGVNQVILDSRPVHAARPHSEAIRDAQRKKPKVPVHAVLTATNPLIRFIGSDDMTQNRELFQVWLQKLAQWHQTTTPYLFLHTPDIAQAPELVHTLWEDLRKTLPEIGAVPAIPQQSSLF", "sequence_length": 272, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d4db11d02f1775deeff415b32da402b036a4408d5efa756fec8441db626d48ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8XCI6.json", "taxon_id": "83334", "uniprot_accession": "Q8XCI6", "uniprot_release": "2026_03" } ], "pfam_id": "PF01904", "short_name": "DUF72", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Myxococcus xanthus (strain DK1622)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/devr-pf01905.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01905", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/devr-pf01905.yaml" } ], "pfam_ids": [ "PF01905" ], "protein_name": "CRISPR-associated protein Cas7/Cst2/DevR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLHVFAAFVTPLGTAANNRGLTEGNITSLQKLVWNGQVHTTVSAESIRFALRRRLNEQEPCNRTYDDASRANAWKDAAFSAWSGKSKEKTYIDDDLLGFMSAEGAKQEKEKGTAKVRRAVLEVSRAVSLTPWSGDVTFNAASPGATPSAQKKGSNPVPYGTEMHATRYQYGVALTPEALRVPARAVTALNQLCALGPVAGNHGRFLFDFSPESVVFRLTQEAAPRILYAFEPSSRAGGVELAALLRKVKSGDVPAKELVLGGQVVEGLGAEEREVLSGAELHTGVVAACRAACKRLEVRKK", "sequence_length": 302, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2347be4eb186ffc6a322324887c2312e37121acd7725218121c62541773a73c1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q07765.json", "taxon_id": "246197", "uniprot_accession": "Q07765", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/devr-family-crispr-associated-autoregulator-tigr01875.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01875", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/devr-family-crispr-associated-autoregulator-tigr01875.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/type-i-a-crispr-associated-protein-cas7-csa2-tigr02583.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR02583", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/type-i-a-crispr-associated-protein-cas7-csa2-tigr02583.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/devr-pf01905.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01905", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/devr-pf01905.yaml" } ], "pfam_ids": [ "PF01905" ], "protein_name": "CRISPR-associated protein Cas7/Cst2/DevR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFLRISGRVRLNSHSLNAQGGGGTNYVEITKAKVSIKNDDRWEILEVPAISGNMVKHWHFVSFVDFFRETDYKDNLTERALRYNGARFGQETKAKKADGSEVELKDESEIIKNFADADVHGFLAPKTGVRRVSLVKTSFILPTEDFIKEVDERLVYAVKHNRVDIDEKGAIKSGEEQTAQMLFNREYATGLYGFEIILDLGFVGVPQSSPSNPVIEDDERKARIVSALKALIPMLSGYIGANLARSFPVFKLEEMIAVVSEKPIPALVHGFYEDYVEVSKNVVENAKKLGFEIEDFGYNVDFGESVSSVEELISKIIEKL", "sequence_length": 320, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4157d2673361af80877296a968415d2949880e5972469ea205c937d680acfb46", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57826.json", "taxon_id": "243232", "uniprot_accession": "Q57826", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/devr-pf01905.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01905", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/devr-pf01905.yaml" } ], "pfam_ids": [ "PF01905" ], "protein_name": "CRISPR-associated aCascade subunit Cas7/Csa2 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISGSVRFLVNLESLNGVESIGNLTKHRTAPVVLKTSTGYLVRYVPVISGEALAHAYQASLVDIAKKEGLPVGSLSSQYEFIKFSTDEALKIEGIKEPKDYNDARRFEVEVMLKDVIADVGGFMYAGGAPVRRTSRIKLGYMIPALRGDEIPAQLEAQFHVRFSNKPVSGSQAIFNVEVSSALYTFSFELDEDLIAVPSTFGEKVKGEEELERQKAKRVKSAIKALYSLLSGNFGGKRSRFLPSMKLMSLVVTKTDFPFMPEPAHDDDYIKTTIMRLGKAKGVLNGNLAKAYVINNEGIEVGEGVTVLSTVEDLVVKLEEE", "sequence_length": 321, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2de5f3f8635d79027837dd35a71bdbbf7affbd92fc311789f556855508eeb3af", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dna-pol-b-thumb-pf14791.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14791", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dna-pol-b-thumb-pf14791.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/dna-polymerase-x.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00522", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/dna-polymerase-x.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P04053", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00533", "PF01909", "PF10391", "PF14716", "PF14791" ], "protein_name": "DNA nucleotidylexotransferase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8e23a70b732436011264855d751556a82b902c74b68558f9220506889c298756", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDPPRASHLSPRKKRPRQTGALMASSPQDIKFQDLVVFILEKKMGTTRRAFLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDVSWLIECIRAGKPVEMTGKHQLVVRRDYSDSTNPGPPKTPPIAVQKISQYACQRRTTLNNCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVKGIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKSLKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGHDVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQKCFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRYATHERKMILDNHALYDKTKRIFLKAESEEEIFAHLGLDYIEPWERNA", "sequence_length": 509, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8e23a70b732436011264855d751556a82b902c74b68558f9220506889c298756", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P04053.json", "taxon_id": "9606", "uniprot_accession": "P04053", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain N315)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aada-c-pf13427.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aada-c-pf13427.yaml" } ], "pfam_ids": [ "PF01909", "PF13427" ], "protein_name": "Spectinomycin 9-adenylyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNLINGKIPNQAIQTLKIVKDLFGSSIVGVYLFGSAVNGGLRINSDVDVLVVVNHSLPQLTRKKLTERLMTISGKIGNTDSVRPLEVTVINRSEVVPWQYPPKREFIYGEWLRGEFENGQIQEPSYDPDLAIVLAQARKNSISLFGPDSSSILVSVPLTDIRRAIKDSLPELIEGIKGDERNVILTLARMWQTVTTGEITSKDVAAEWAIPLLPKEHVTLLDIARKGYRGECDDKWEGLYSKVKALVKYMKNSIETSLN", "sequence_length": 260, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e0eb7e5a7a7dd0b1cfe1c326ba31f177da7d4bc1d13a328cce4d82fdf6aee780", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A0D1.json", "taxon_id": "158879", "uniprot_accession": "P0A0D1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aada-c-pf13427.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aada-c-pf13427.yaml" } ], "pfam_ids": [ "PF01909", "PF13427" ], "protein_name": "Aminoglycoside (3'') (9) adenylyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MREAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPHSDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAKRELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLFEALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQPVILEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK", "sequence_length": 263, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7e2fe03f613cd8419ce2fd94427ac6736ade16cd967d939afb7cd9adbd2794f4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AG05.json", "taxon_id": "562", "uniprot_accession": "P0AG05", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus schleiferi", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cd-ntase-c-pf26305.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26305", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cd-ntase-c-pf26305.yaml" } ], "pfam_ids": [ "PF01909", "PF26305" ], "protein_name": "Cyclic GMP-AMP synthase CdnE03", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLFTEEQLKLYSKPLSESEKEKCENAIRIIQESLESLGYETKKGIHRNNEDTLSYQIKMTNPSKDYELSIFVKGSYATNTNVRQNSDVDIAVVKESEFFDKYREGKTRENYKFVSSNKPPYHFKDEVEEALIERFGRSEVRRGNKAIRINGNTYRKETDCVPCFRYRDYSNDYMDDPNNFIGGITIYSDKGERIINYPEQHINNSVIKNNNTNYKYKKMVRIIKEIRYQLIDSKNENAKQTSSFGVEGLFWNIPDYKYSNDEMLGDTFNALIAFLIDNIDKLREFKEPNDILNLCDSQEKNNVYKNFILDVKNYFEYSGEKKYE", "sequence_length": 324, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "21620af25804aca7a56dee9e142eb5ba7e2e8d9ab47e8ab8282597c46eaf58eb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DXA6.json", "taxon_id": "1295", "uniprot_accession": "P0DXA6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/act-pf01842.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/act-pf01842.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glnd-3rd-pf27444.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27444", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glnd-3rd-pf27444.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glnd-5th-pf27446.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27446", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glnd-5th-pf27446.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glnd-ur-utase-pf08335.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08335", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glnd-ur-utase-pf08335.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hd-pf01966.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01966", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hd-pf01966.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P27249", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01842", "PF01909", "PF01966", "PF08335", "PF27444", "PF27446" ], "protein_name": "Bifunctional uridylyltransferase/uridylyl-removing enzyme", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f96c1eeaf197b0c28f294f84e426bda7a59e63e857e78c9d70b426c19d5f2200", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQRWLGDAFDNGISAEQLIEARTEFIDQLLQRLWIEAGFSQIADLALVAVGGYGRGELHPLSDVDLLILSRKKLPDDQAQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVATNLIESRLLIGDVALFLELQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPDIKSSPGGLRDIHTLQWVARRHFGATSLDEMVGFGFLTSAERAELNECLHILWRIRFALHLVVSRYDNRLLFDRQLSVAQRLNYSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLFDEAILALPADEKPRPIDDEFQLRGTLIDLRDETLFMRQPEAILRMFYTMVHNSAITGIYSTTLRQLRHARRHLQQPLCNIPEARKLFLSILRHPGAVRRGLLPMHRHSVLGAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVMLKLESFASEETRQRHPLCVDVWPRLPSTELIFIAALFHDIAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQHLLMSVTAQRRDIQDPEVIKQFAEEVQTENRLRYLVCLTVADICATNETLWNSWKQSLLRELYFATEKQLRRGMQNTPDMRERVRHHQLQALALLRMDNIDEEALHQIWSRCRANYFVRHSPNQLAWHARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTTRDGMAMDTFIVLEPDGNPLSADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHFTVETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIIATADRRALNNELQQEVHQRLTEALNPNDKG", "sequence_length": 890, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f96c1eeaf197b0c28f294f84e426bda7a59e63e857e78c9d70b426c19d5f2200", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P27249.json", "taxon_id": "83333", "uniprot_accession": "P27249", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/25a-synth-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00832", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/25a-synth-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/25a-synth-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/25a-synth-2.yaml" } ], "pfam_ids": [ "PF01909", "PF10421" ], "protein_name": "2'-5'-oligoadenylate synthase 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGNGESQLSSVPAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEPEQFPLVQGVAIGGSYGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKTGDKLKFCLFTKWLKNNFEIQKSLDGFTIQVFTKNQRISFEVLAAFNALSLNDNPSPWIYRELKRSLDKTNASPGEFAVCFTELQQKFFDNRPGKLKDLILLIKHWHQQCQKKIKDLPSLSPYALELLTVYAWEQGCRKDNFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNILLHQLQSARPVILDPVDPTNNVSGDKICWQWLKKEAQTWLTSPNLDNELPAPSWNVLPAPLFTTPGHLLDKFIKEFLQPNKCFLEQIDSAVNIIRTFLKENCFRQSTAKIQIVRGGSTAKGTALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVSFEPPKWKAPRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDLPGGEFSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYKECERKLKPKGSLPPKYALELLTIYAWEQGSGVPDFDTAEGFRTVLELVTQYQQLCIFWKVNYNFEDETVRKFLLSQLQKTRPVILDPAEPTGDVGGGDRWCWHLLAKEAKEWLSSPCFKDGTGNPIPPWKVPTMQTPGSCGARIHPIVNEMFSSRSHRILNNNSKRNF", "sequence_length": 719, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea40ef11cb05e94ce66220ba683ba6a24ef4f76353db443b53de85d5db37c6de", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P29728.json", "taxon_id": "9606", "uniprot_accession": "P29728", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Azotobacter vinelandii", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glnd-5th-pf27446.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27446", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glnd-5th-pf27446.yaml" } ], "pfam_ids": [ "PF01842", "PF01909", "PF01966", "PF08335", "PF27444", "PF27446" ], "protein_name": "Bifunctional uridylyltransferase/uridylyl-removing enzyme", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPQVDPDLFDPGQFQAELALKSSPIPAYKKALRCAREVLDARFQEGRDIRRLIEDRAWFVDQILALAWNRFDWSEDADIALIAVGGYGRGELHPYSDIDLLILMDGADHEVFREPIEGFLTLLWDIGLEVGQSVRSLAECAEEAQADLTVITNLMESRTIAGPEHLRQRMQEVTSAQRMWPSRAFFLAKRDEQKTRHARYNDTEYNLEPNVKGSPGGLRDIQTLLWIARRQFGTINLHAMVGQGFLLESEYTLLASSQEFLWKVRYALHMLAGRAEDRLLFDLQRQIAGLLGYEDSDAKLAVERFMQKYYRVVLGIAELTELVFQHFEEVILPGDAAGRVEPLNERFQVRDGYLEVTHAGVFQETPSALLEIFVLLARRPEIRGVRADTIRLLRDHRYLIDDAFRRDPHNTGLFIELFKSRQGIHRNLRRMNRYGILGRYLPEFGHIVGQMQHDLFHIYTVDAHTLNLIKNLRKLFWPELAEKYPLASKLIEKLPKPELIYLAGLYHDIGKGRGGDHSELGAADALAFCQRHDLPAMDTQLIVWLVRNHLLMSTTAQRKDLSDPQVIFDFAQKVRDQTYLDYLYVLTVADINATNPTLWNSWRASLLRQLYTETKHALRRGLEQPVGREEQIRQTQKAALDILVRSGTDPDDAEHLWTQLGDDYFLRHTSSDIAWHTEAILQHPSSGGPLVLIKETTQREFEGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDTYIVLDADGGSIGNNPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTDAHNQPLSDPELCARLQLAIAEQLADGDSYIQPSRISI", "sequence_length": 899, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "efdc5a480cda01d63c0d548d20937d1288f4649db3042bf80b667d75c4c9810d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P36223.json", "taxon_id": "354", "uniprot_accession": "P36223", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Klebsiella oxytoca", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glnd-5th-pf27446.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27446", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glnd-5th-pf27446.yaml" } ], "pfam_ids": [ "PF01842", "PF01909", "PF01966", "PF08335", "PF27444", "PF27446" ], "protein_name": "Bifunctional uridylyltransferase/uridylyl-removing enzyme", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNSLSNTVPPDLSAQPENPGEWPKSDFNCATIKALIDAFQRWLGEAFDSGIAAERLIEARTEFIDQLLQRLWVEYGFGSINDIALVAVGGYGRGELHPLSDIDLLILSRKKLPDEQAQKVGERLALLWDIKLEVGHSVRTLEECLLEGLSDLSVATNLIESRLLIGDVALFLELQKHIFSDGFWPSEKFFAAKVEEQNDRHQRYHGTSYNLEPDVKSSPGGLRDIHTLQWIARRHFGATSLDEMVGFGFLTEAERNELNECLHQLWRIRFALHLELNRYDNRLLFDRQFSVARRLRYEGESNQPIEHMMKDFFRVTRRVSELNQMLIQLFEEAILALTEDEKPRPIDDDFQLRGTLIDLRDDTLFIREPQAILRMFYTMVRNSSITGIYSTTVRHLRHARRHLTQPLCYIPEARTLFLSMLRHQGGLSRGLLPMHRHSVLWAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVLLKLESFAKEETRSRHPLWLELWPRLTHPELILIAALFHDIAKGAGGDHSILGAQDVLKFAELHGLNCAQTQLVAWLVRHQLLMSVTAQRRDIQDPEVIKQFAEEVQTENRLHYLVCLTVADICATNENLWNSWKQSLLRELYFATEKQLRRGMQNTPDMRERVRHHQLQALALLRMENINEQALHQIWNRCRANYFVRHTPNQLAWHARNLLKHDLSKPMILLSSHATRGGTEIFIWSPDRPYLFAAVSAELDRRNLSVHDAQIFTTRDGMAMDTFIVLEPDGSPLSADRTQMIRVGLEQTLSQRSWQPPAPRRQAAKLRHFSVPTEVNFLPTHTDRKSFLELIALDQPGLLARVGQVFADLGISLHGARITTIGERVEDLFIIATADRRALNNELQQEVQQRLTEALNPNDKG", "sequence_length": 887, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "08aff6782d7ca11ed59c6bf0e0d2fa148193691ac051c4e4e59dc33edd8a7738", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41393.json", "taxon_id": "571", "uniprot_accession": "P41393", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhizobium meliloti (strain 1021)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/act-acr-d1-pf26956.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26956", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/act-acr-d1-pf26956.yaml" } ], "pfam_ids": [ "PF01909", "PF01966", "PF08335", "PF26956", "PF27444" ], "protein_name": "Bifunctional uridylyltransferase/uridylyl-removing enzyme", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARHETSFPEILDVAALRARCDFIASAHAEQREPMRRALLAAFKEANVAGRAKARELLAADGAGIKCAERISWLQDQLITLLHDFVLNQVFDAAKAPEASRIAVTAVGGYGRGTLAPGSDIDLLFLLPAKKAVWAEPAIEFMLYILWDLGFKVGHATRTIEECIRLSRADMTIRTAILECRYVCGSAALANELETRFDHEIVRNTGPEFIAAKLAERDERHRKAGDTRYLVEPNVKEGKGGLRDLHTLFWISKYFYRVKDSADLVKLGVLSKQEYKLFQKAEDFLWAVRCHMHFLTGKAEERLSFDIQREIAEALGYHDHPGLSAVERFMKHYFLVAKDVGDLTRIFCSALEDQQAKDTPGITGVISRFRNRVRKIAGTLDFVDDGGRIALAGTDVFKRDPVNLMRLFHIADINGLEFHPAALKQVTRSLGLITPHLRENEEANRLFLSILTSRRNPELILRRMNEAGVLGRFIPEFGKIVSMMQFNMYHHYTVDEHLLRSVDVLSRIERGLEEEAHPLTAMLMPGIEDREALYVAVLLHDIAKGRPEDHSVAGAKVARKLCPRFRLTPKQTEMVVWLVEEHLTMSMVAQTRDLNDRKTIVDFAERVQSLERLKMLLILTVCDIRAVGPGVWNGWKGQLLRTLYYETELLLSGGFSELSRKERAKHAAHMLEEALADWPKKERQAYVRLHYQPYLLTVALEEQVRHAGFIREADRAGRTLATMVRTHDFHAITEITVLSPDHPRLLTVIAGACAAAGANIVGAQIHTTSDGRALDTILVNREFSVAEDETRRAASIGKLIEDVLSGRKRLPEVIASRTRVKKRSRAFTVTPEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKITSENRQMNIAARLKAVLAGEVDEARERMPSGIIAPTPVSRVPHGSKTTKAET", "sequence_length": 949, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c96f17ece7d8b1605a4f81e54985717478b4c31e5009b766fa02765c956da30", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P56884.json", "taxon_id": "266834", "uniprot_accession": "P56884", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharolobus shibatae (strain ATCC 51178 / DSM 5389 / JCM 8931 / NBRC 15437 / B12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/caa-c-pf21133.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21133", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/caa-c-pf21133.yaml" } ], "pfam_ids": [ "PF01909", "PF09249", "PF21133" ], "protein_name": "CCA-adding enzyme", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIEEEVLKIIKPTEEDKKGIEKVLEIIRERLNKLDFEVEGSFRKGTWLRQDTDVDVFVFYPKDVGKEYLERNALNDIINRIKDLDYTLAYAEHPYVIVNINNVEVDIVPALRVESGDRAITAVDRTPFHTKYVTSHLDERGKDEVRLLKRFMKGIGVYGAELKVQGFSGYATELLVIYYGSFRKVLEAASKWKHPIKIELTKPMRAFSEPLIIPDPVDPRRNVTAAVSLKNIATFSVAAKYYLKNPSMEFFFPSKKVEEKIKGDVLILRLNLDEKSSEDIIWGQIKRSVNKIERALKQSGFRVIDIQAWGDTSNIVIAVQLESKNIGQYYLNIGPQYYSETIDDFIQKNDNIWVGEDGRLYSIKERKEYNAEAIAKKNIVLKVKYNIESYWLQNTEDQQIMKFLRKTPTWLK", "sequence_length": 412, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b943b07040cc061ce04908d8df1ce79541e8442d3214b007fd6339a0d0edf9a6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P77978.json", "taxon_id": "523848", "uniprot_accession": "P77978", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/25a-synth-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/25a-synth-2.yaml" } ], "pfam_ids": [ "PF01909", "PF10421" ], "protein_name": "2'-5'-oligoadenylate synthase 1A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEQELRSTPSWKLDKFIEVYLLPNTSFRDDVKSAINVLCDFLKERCFRDTVHPVRVSKVVKGGSSGKGTTLKGKSDADLVVFLNNFTSFEDQLNRRGEFIKEIKKQLYEVQREKHFRVKFEVQSSWWPNPRALSFKLSAPHLQQEVEFDVLPAYDVLGHVSLYSNPDPKIYTILISECISLGKDGEFSTCFTELQRNFLKQRPTKLKSLIRLVKHWYQLCKEKLGKPLPPQYALELLTVYAWERGNGITEFNTAQGFRTILELVTKYQQLRIYWTKYYDFQHPDVSKYLHRQLRKSRPVILDPADPTGNVAGGNQEGWRRLASEARLWLQYPCFMNRGGSPVSSWEVPVDEAWSCILL", "sequence_length": 358, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f1a463cf5084f810cc0e7f153906864e14322e62a1d31f4e332185e73a961c0f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q05961.json", "taxon_id": "10116", "uniprot_accession": "Q05961", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/act-acr9-3rd-pf24931.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24931", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/act-acr9-3rd-pf24931.yaml" } ], "pfam_ids": [ "PF01909", "PF01966", "PF08335", "PF24931", "PF27444" ], "protein_name": "Bifunctional uridylyltransferase/uridylyl-removing enzyme", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIPRIRQPRAVIDRKALTVVLEDLAATVTDNRERRARLLAVLKGALGDGRAEVRRRFLEEKGTGAAVFAENSHLMDQIIRLLFDFTTTHVYPRANRTIGEQMTVLAVGGYGRGEMSPQSDVDLLFLLPYKATPLHEQVVEYMLYTLWDMGLKVGHATRSIEECIRQARGDLTIRTAMLETRYLWGDRALYGQLKTKFWTGVVTGTGPDFVEAKLAERDERHLRMGDSRYVLEPNIKDGKGGLRDLHTLLWIARYIYGVSDMRELVELGVLSADAATKFGRARAFLWTVRCHLHYLADRPEERLTFDVQPAIAARMGYTDRNSGRGVERFMKHYFLMAKTVGDLTRIFCAVLEDQQKRRPILSIATLLMRKRNLGDFVLDGGRLAVAGRGAFREHPLQLISLFKVAHDHGLDIHPDTLRLVTEHLPTVTLLRNDAKANALFMEILTSRKDPELALRQLSESGVLARFIPDFGRVTAQMQFDMYHVYTTDEHTIRAIGLLHRLETGALRDRMPAAADAVHKVQSRRALYLAVLLHDIAKGRGGDHSILGAEVAMRLGPRLGMSEEETETVAWLVRHHLDMSRTAFKRDLDDIKTILDFTGLVQSVERLHLLLALTTVDILAVGPAVWNNWKSSLLRELYTHSKDVLTSGFQAEARDKRVAHKREELAAALADWPQASRERYLDLHYPAYWLTFDSATHLRHARMLRRARDAGLTVAVEVLPDPERAVSEVLVATDDHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTVQTLEGHAIEKEERIARLAKTVRDVLTGDLPLEKALRRQPPRLPERTRHLTVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYVKDVFGMKIVHRAKLAQIREALEAAITQTVPRKVEEGAEQGAEKADAGEIVAA", "sequence_length": 936, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "068144db023ba7214da41d7c47ac89210fbe490ae78d629ef94c70719f1d25ec", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2RNG2.json", "taxon_id": "269796", "uniprot_accession": "Q2RNG2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhizobium tropici", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/act-acr-d1-pf26956.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26956", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/act-acr-d1-pf26956.yaml" } ], "pfam_ids": [ "PF01909", "PF01966", "PF08335", "PF26956", "PF27444" ], "protein_name": "Bifunctional uridylyltransferase/uridylyl-removing enzyme", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METHHIDFSTVLDVSALKAECEALAKRGLDKNEERSALLALLKKASQDGREEARRLLIADGSGLNCAHRISWLQDQIITVLYDLTVHHAYPKQAGVFSVTAVGGYGRDTLAPGSDIDLLFLFQPKPASETHKAVEFILYMLWDMGFKVGHATRSVEECIREAKSDMTVRTAILETRYICGNVALERELQARFDKEIVTNTGPEFIAAKLAERDERHRKAGDTRYLVEPNVKEGKGGLRDLHTLFWISKYYYHVRDPAELVKLGVLSKQEYRLFEKAEDFLWAVRCHMHFLTGKAEERLSFDIQRDIAAALDYNARPGLSAVERFMKHYFLVAKDVGDLTRILCAALEDQQAKATPGLTGVISRFANRSRKIPGTVEFVEDRGRIALANPDVFKRDPVSLIRLFFVADINGLEFHPDALKRVTRSLSLIDNDLRENEEANRLFLSILTSKRDPALILRRMNEAGVLGRFIPEFGKIVSMMQFNMYHHYTVDEHLIRAVEVLSEIDKGRAEDIHPLTNKLMPNIEDRDALYVAVLLHDIAKGREEDHSEAGAAVARKLCPRFGLSPKQTELVVWLIAEHLTMSMVAQTRDLTDRKTIIDFADRVQSLDRLKMLLILTVCDIRAVGPGVWNGWKGQLLRTLYYETELLLSGGFSEVSRKERAEAAAEALEHALADWSQKERKAYVKLHYQPYLLSVPLEDQIRHTQFMRESDKAGKVLATMVRTDSFHAITEITVLSPDHPRLLTVIAGACAAAGANIADAQIFTTSDGRALDTIHVSREFPDDADELRRAATIGKMIEDVLAGRKRLPEVIATRTKNRRKNKAFVIPPSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVADLVGQKISNENRRAYITARLKAVMAGEEDEMRERMPSGIIAPAATRGVAVEKSDTEKKAGSAA", "sequence_length": 948, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2fb0d231d9b2d00bfc3d23a328f1b7648d6342ed666d3587dfd4ae0dcd2e4ff2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q53245.json", "taxon_id": "398", "uniprot_accession": "Q53245", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/ampylase-activity-go0070733.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070733", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/ampylase-activity-go0070733.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/nucleotidyltransferase-nt-domain-of-staphylococcus-aureus-kanamycin-nu-cd05403.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05403", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/nucleotidyltransferase-nt-domain-of-staphylococcus-aureus-kanamycin-nu-cd05403.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/polymerase-nucleotidyl-transferase-domain-ipr002934.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002934", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/polymerase-nucleotidyl-transferase-domain-ipr002934.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ntp-transf-2-pf01909.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01909", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ntp-transf-2-pf01909.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q57590", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01909" ], "protein_name": "Putative protein adenylyltransferase MJ0126", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "af8db229ea3e62f0dc78a37888668b2db9b50f736f6fa4183095e472aabf4cfd", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKTLSEIKEILRKHKKELKEKYKVKSIAIFGSYARNEQTETSDIDILIDYYEPISLLKLIELENYLSDLLEIKVDLITKNSIHNPYVKKSIEEDLIYI", "sequence_length": 98, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "af8db229ea3e62f0dc78a37888668b2db9b50f736f6fa4183095e472aabf4cfd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q57590.json", "taxon_id": "243232", "uniprot_accession": "Q57590", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/nucleotidyltransferase-nt-domain-of-staphylococcus-aureus-kanamycin-nu-cd05403.yaml", "qualification_status": 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"ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ntp-transf-2-pf01909.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01909", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ntp-transf-2-pf01909.yaml" } ], "pfam_ids": [ "PF01909" ], "protein_name": "Putative protein adenylyltransferase MJ1217", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTLSEIKEILRKHKKILKEKYKVKSIAIFGSYAREEQKETSDIDILIDYYEPISLLKLIELENYLSDLLGIKVDLITKNSIHNPYVKKSIEEDLIYI", "sequence_length": 98, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2901131b1c0cd37c0369cf84fce55e164083c862cbd35f9055fd4e29e517db84", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58614.json", "taxon_id": "243232", "uniprot_accession": "Q58614", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/nucleotidyltransferase-nt-domain-of-staphylococcus-aureus-kanamycin-nu-cd05403.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05403", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/nucleotidyltransferase-nt-domain-of-staphylococcus-aureus-kanamycin-nu-cd05403.yaml" } ], "pfam_ids": [ "PF01909" ], "protein_name": "Putative protein adenylyltransferase MJ1305", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDEKMLNNILDEFLQKCKQKFGDDLISIILFGSYARGTAVEYSDVDLLVIAKNLPKRRIDRHKVLRDIVLEFIYRYGINISPILVEPRDLSLKSINPLICGILTGYKIIYDRDNFWKNYLERIKPIIKRIKPIFIDEEKEWKIADLI", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b4ecf5f5118e9f5105f4b7d59934ab0cba4addfbf699f6e4144e1646c6ecdda0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58701.json", "taxon_id": "243232", "uniprot_accession": "Q58701", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Azospirillum brasilense", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/act-acr9-3rd-pf24931.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24931", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/act-acr9-3rd-pf24931.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glnd-3rd-pf27444.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27444", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glnd-3rd-pf27444.yaml" } ], "pfam_ids": [ "PF01909", "PF01966", "PF08335", "PF24931", "PF27444" ], "protein_name": "Bifunctional uridylyltransferase/uridylyl-removing enzyme", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSTRAASADASDAKDAGTANIPNKRAILSRRKLAEDLETLVAEHGTGDKLRPALIARLRGALNDGRAEVRARFEAKGSGEDCVRQNCYLADGVVRSLADLTVTHIFPTPNPTSGEVFDIVATGGYGRGELAPFSDIDLLFLLPYKRTPRVEQVVEYMLYILWDLGLKVGHAVRSVDDCIRQSKADVTIRTAILESRYLWGPRKLFHRLRRRFDREVVAGTGPEFVEAKLAERDNRHLKLGDSAYVLEPNLKDGKGGLRDLQTLFWIAKYLYRVEDVDDLVGKKVLLPEEAHGFAKAQNFLWTARCHLHYLTGRMEDRMTFDVQTSIGNRMGYTDHAGTKGVERFMKHYFLVAKDVGDLTRIFCAALEAESKRPPKFNILRLAALARRKDVDGFVVDGERLNVRSDRQFKDEPLDMIRLFHTAQQNDIDIHPNALRAITRSLSVVGPKLRADPEANRLFLEILTGRKDPEITLRRMNEAGVLARFIPDFGRVVAQMQYDMYHVYTVDEHTLFALGILHKIEMGELTDELPLSSEVIHKVVSRRALYVAVLLHDIAKGRGGDHSILGARVAEKLCPRLGLTAEETETVAWLVRWHLAMSYTAFKRDLEDDKTVRDFVSLVQSPERLRLLLVLTVADIRAVGPQRWNNWKATLLRELYNRSEEVMSGGLSVEGRGRRIQAAQAALRDELSDFDAADFERHLALGYPAYWLAFDAETLGRQARLVRGRLRDERPLTVNTRIDRGRAITEVTIFATDHHGLFSRLAGALAAAGADIVDARIFTMTNGMALDVFTVQDAAGGGAFESGDKLAKLSVMIEKVLSGQLKPLHDLTKRKAPHASRTRVFHVPPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKDVFGLKVTHENKLAQIRERLLHALADPSA", "sequence_length": 933, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2db8dfad7a0a79f8300ad9c363580de2a1cdcc17564d09663a5877ca2e975b2a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8RQD1.json", "taxon_id": "192", "uniprot_accession": "Q8RQD1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aada-c-pf13427.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aada-c-pf13427.yaml" } ], "pfam_ids": [ "PF01909", "PF13427" ], "protein_name": "Aminoglycoside (3'') (9) adenylyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLSIPPSIQCQTEAACRLITRVTGDTLRAIHLYGSAVAGGLKPNSDIDLLVTICQPLTEAQRATLMQELLALSSPPGASAEKRALEVTVVLYSQLVPWCFPPSREMQFGEWLREDICQGIYEPAQQDWDMVLLITQILETSIPLKGERAERLFTPAPAAQLLKALRYPLDLWQSTADVQGDEYHIVLTLARIWYTLSTGRFTSKDAAADWLLPQLPEDYAATLRAAQREYLGLEQQDWHILLPAVVRFVDFAKAHIPTQFT", "sequence_length": 262, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3939ffdd8036e83d3bf10118bb39e6c63f286833e71cac7287a7b5ef8d7d7664", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8ZPX9.json", "taxon_id": "99287", "uniprot_accession": "Q8ZPX9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhizobium leguminosarum bv. viciae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glnd-3rd-pf27444.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27444", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glnd-3rd-pf27444.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glnd-ur-utase-pf08335.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08335", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glnd-ur-utase-pf08335.yaml" } ], "pfam_ids": [ "PF01842", "PF01909", "PF01966", "PF08335", "PF27444" ], "protein_name": "Bifunctional uridylyltransferase/uridylyl-removing enzyme", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRDLDFTNILDVELLQKQCDAVAEANRNRPDVLRADLLAVLKKASTEGRQKAREALMADGGGLNCAYRISWLQDQITTVLYNFATAHIFPQQKDKFAVTAVGGYGRDTLAPGSDIDLLFLFLPRPAEETHKAVEFMLYVLWDMGFKVGHATRTVEECIALSKSDMTIRTAILEMRYICGLQRLETELETRFDKEIVTGTGPEFIAAKLAERDERHRKAGDTRYLVEPNVKEGKGGLRDLHTLFWISKYYYHVRDQAELVKLGVLSKHEYRLLEKADDFLWAVRCHMHFLTGKAEERLSFDIQREIAEAFGYHTRPGLSAVERFMKHYFLVAKDVGDLTRILCAALEDQQAKSIPGLTGVISRFTHRNRKIAGSVEFVEDRGRIALADPEVFKRDPVNIIRLFHVADINGLEFHPDALKRVTRSLALIDNALRENDEANRLFMSILTSKRDPALILRRMNEAGVLGRFIPEFGKIVAMMQFNMYHHYTVDEHLIRTVDILSEIDKGRAEDLHPLANKLMPGIEDREALYVAVLLHDIAKGRQEDHSIAGARVARKLCVRFGLSQKQTEIVVWLIEEHLTMSMVAQTRDLTDRKTITDFADRVQSLDRLKMLLILTICDIRAVGPGVWNGWKGQLLRTLYYETELLLAGGFSEVSRKERANAAAEALHSALADWSQKDRNTYTKLHYQPYLLSVPLEDQIRHAHFIRQADKAGQALATMVRTDSFHAITEITVLSPDHPRLLAVIAGACAAAGANIVDAQIFTTSDGRALDTIHVSREFTDDADELRRAATIGRMIEDVLSGRKRLPEVIATRARNRKKSKAFVIPPSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTDLVGQKISGDSKRANITARMKAVMAEEEDELRERMPSGIIAPAATARTPPASEKKAGSPI", "sequence_length": 944, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "af5bd19fa8953cdecb6f0b8f2b1807246484513f150a56c3156152102c1cf69e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RAE4.json", "taxon_id": "387", "uniprot_accession": "Q9RAE4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrococcus abyssi (strain GE5 / Orsay)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/caa-c-pf21133.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21133", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/caa-c-pf21133.yaml" } ], "pfam_ids": [ "PF01909", "PF09249", "PF21133" ], "protein_name": "CCA-adding enzyme", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKMTLKEVLESIKPKDEERKKVKLIMDELRGIAQEVIEESGEEIEVKFVGSLAKDTYLSGDHDIDMFLAFPLSIPVEKLKSKGLEIAESIGKRLESYEISYAEHPYVRGVYKGYQVDIVPCYNVRDWREVRTAVDRSILHTEWVLKNIKGKNDEVRLLKRFLKGINAYGSEVYRRGFSGYLAEILVIKFGSFLKVLEKADFMLRQKIIDPENWLKREPEIAMKTVKREIEEDKPIIVIDPVDPRRNVAANLSWERYGLFYFKAREFLTKPSTELFFPRDKKGNYLEVLRRKGTHLVTLTFEPPNLVDDIIIPQVERTAKGLARQLELEGFRVLGIDYGRDFIFLEVEEIERPRIKIKKGPLYFTHHGLRFFDKNDIVWIEGKELASEKSSLGFIVDVLEDILRKGQFSAGKNVKDAIVGANIIIDFVPKALAQEAYLFLSREKFRVK", "sequence_length": 448, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "081de1dc115af2494d3a3126a7dcd1b5758d7f7e461ba9a796d15d8d39388df5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9V2H1.json", "taxon_id": "272844", "uniprot_accession": "Q9V2H1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/25a-synth-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00832", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/25a-synth-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/25a-synth-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/25a-synth-2.yaml" } ], "pfam_ids": [ "PF01909", "PF10421" ], "protein_name": "2'-5'-oligoadenylate synthase 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLYSTPAAALDRFVARRLQPRKEFVEKARRALGALAAALRERGGRLGAAAPRVLKTVKGGSSGRGTALKGGCDSELVIFLDCFKSYVDQRARRAEILSEMRASLESWWQNPVPGLRLTFPEQSVPGALQFRLTSVDLEDWMDVSLVPAFNVLGQAGSGVKPKPQVYSTLLNSGCQGGEHAACFTELRRNFVNIRPAKLKNLILLVKHWYHQVCLQGLWKETLPPVYALELLTIFAWEQGCKKDAFSLAEGLRTVLGLIQQHQHLCVFWTVNYGFEDPAVGQFLQRQLKRPRPVILDPADPTWDLGNGAAWHWDLLAQEAASCYDHPCFLRGMGDPVQSWKGPGLPRAGCSGLGHPIQLDPNQKTPENSKSLNAVYPRAGSKPPSCPAPGPTGAASIVPSVPGMALDLSQIPTKELDRFIQDHLKPSPQFQEQVKKAIDIILRCLHENCVHKASRVSKGGSFGRGTDLRDGCDVELIIFLNCFTDYKDQGPRRAEILDEMRAQLESWWQDQVPSLSLQFPEQNVPEALQFQLVSTALKSWTDVSLLPAFDAVGQLSSGTKPNPQVYSRLLTSGCQEGEHKACFAELRRNFMNIRPVKLKNLILLVKHWYRQVAAQNKGKGPAPASLPPAYALELLTIFAWEQGCRQDCFNMAQGFRTVLGLVQQHQQLCVYWTVNYSTEDPAMRMHLLGQLRKPRPLVLDPADPTWNVGHGSWELLAQEAAALGMQACFLSRDGTSVQPWDVMPALLYQTPAGDLDKFISEFLQPNRQFLAQVNKAVDTICSFLKENCFRNSPIKVIKVVKGGSSAKGTALRGRSDADLVVFLSCFSQFTEQGNKRAEIISEIRAQLEACQQERQFEVKFEVSKWENPRVLSFSLTSQTMLDQSVDFDVLPAFDALGQLVSGSRPSSQVYVDLIHSYSNAGEYSTCFTELQRDFIISRPTKLKSLIRLVKHWYQQCTKISKGRGSLPPQHGLELLTVYAWEQGGKDSQFNMAEGFRTVLELVTQYRQLCIYWTINYNAKDKTVGDFLKQQLQKPRPIILDPADPTGNLGHNARWDLLAKEAAACTSALCCMGRNGIPIQPWPVKAAV", "sequence_length": 1087, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7a2c53697f2c32966e3d0bb8484f5cb7f55136d487f2fbf168b0cb84fb412f0d", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y6K5.json", "taxon_id": "9606", "uniprot_accession": "Q9Y6K5", "uniprot_release": "2026_03" } ], "pfam_id": "PF01909", "short_name": "NTP_transf_2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/mth1187-family-thiamine-binding-protein-tigr00106.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00106", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/mth1187-family-thiamine-binding-protein-tigr00106.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/thiamine-binding-protein-ipr002767.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002767", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/thiamine-binding-protein-ipr002767.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/cobalamin-adenosyltransferase-like-1-20-1200-10.yaml" } ], "pfam_ids": [ "PF01923" ], "protein_name": "Corrinoid adenosyltransferase MMAB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVWLFGGRLGLRGRLSACRLLCPRFQSRGPQGGEDGDRLQPSSTAAKIPKIYTKTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFAMELVTEKGHMFAEELQKIQCMLQDVGSALATPRSSAREAHLKHTAFQEGPVLELERWIDKYSSQLPPLKAFILPSGGKSSSALHFCRAVCRRAERRVVPLVQMGETDANVAKFLNRLSDYLFTVARYAAMKEGSQEKIYKKHDV", "sequence_length": 237, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "05551743b0fe0890a854300abf8d15bd796493f4f78685d10bafb246e8f681f5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D273.json", "taxon_id": "10090", "uniprot_accession": "Q9D273", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella 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"MNDFITETWLRANHTLSEGSEIHLPADARLTPSARELLESRRLRIKFLDPQGRLFVDDDEQQPQPVHGLTSSDTHPQACCELCRQPVVKKPDTLTHLTADKMVAKSDPRLGFRAALDSAIALTVWLQIELAEPWQPWLFDIRSRLGNIMRADAIDEPLAAQSIVGLNEDELHRLSHQPLRYLDHDHLVPEASHGRDAALLNLLRTKVRETETLAAQVFITRSFEVLRPDILQALNRLSSTVYVMMILSVAKHPLTVAQIQQRLGEKP", "sequence_length": 267, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6e997a4bc692c5bd4d89a7f8afabf4a0cf04908ca53bcc5772cd755583a1012c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZFV4.json", "taxon_id": "99287", "uniprot_accession": "Q9ZFV4", "uniprot_release": "2026_03" } ], "pfam_id": "PF01923", "short_name": "Cob_adeno_trans", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 9, "discovery_scanned": true, "example_count": 9, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/taue-pf01925.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:F4I8X6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01925" ], "protein_name": "Sulfite exporter TauE/SafE family protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d670adad4b9351e4b98ed06445e6df79564b213745551c461892eecd68ac554d", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTINLVPLLLSLITIFTIFNPSALADQSQIRSTTSQWLHFSEDLSQSTIEVSIPTIIAAVLSFFAASISSAGGIGGGGLFLSIMTIIAGLEMKTASSFSAFMVTGVSFANVGCNLFLRNPKSRDKTLIDFDLALTIQPCLLLGVSIGVICNRMFPNWLVLFLFAVFLAWSTMKTCKKGVSYWNLESERAKIKSPRDVDGIEVARSPLLSEEREDVRQRGMIRFPWMKLGVLVIIWLLFFSINLFRGNKYGQGIISIKPCGALYWFLSSLQIPLTIFFTLCIYFSDNVQSNHTSHSNQNSEQETGVGGRQNKLMLPVMALLAGVLGGLFGIGGGMLISPLLLQIGIAPEVTAATCSFMVLFSSSMSAIQYLLLGMEHAGTAAIFALVCFVASLVGLMVVKKVIAKYGRASIIVFAVGIVMALSTVLMTTHGAFNVWNDFVSGRYMGFKLPC", "sequence_length": 450, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d670adad4b9351e4b98ed06445e6df79564b213745551c461892eecd68ac554d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/F4I8X6.json", "taxon_id": "3702", "uniprot_accession": "F4I8X6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transmembrane-protein-taue-like-transmembrane-domain-ipr002781.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002781", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transmembrane-protein-taue-like-transmembrane-domain-ipr002781.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/taue-pf01925.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01925", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/taue-pf01925.yaml" } ], "pfam_ids": [ "PF01925" ], "protein_name": "Sulfite exporter TauE/SafE family protein 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTLFVLFLLLLCVFAINANQEEENLPQSHHNLLHKVQQWRTSLKESSAAELKLSSAIIMAGVLCFLAALISSAGGIGGGGLFIPIMTIVAGVDLKTASSFSAFMVTGGSIANVISNLFGGKALLDYDLALLLEPCMLLGVSIGVICNRVLPEWLITVLFAVFLAWSSLKTCRSGVKFWKLESEIARESGHGRPERGQGQIEEETKNLKAPLLEAQATKNKSKIPWTKLGVLVIVWASFFVIYLLRGNKDGKGIITIKPCGVEYWILLSLQIPLALIFTKLALSRTESRQEQSPNDQKNQEGTRLDKSTRLKFPAMSFLAGLLGGIFGIGGGMLISPLLLQSGIPPQITAATTSFMVFFSATMSAVQYLLLGMQNTDTAYVFSFICFLASLLGLVLVQKAVAQFGRASIIVFSVGTVMSLSTVLMTSFGALDVWTDYVAGKDMGFKLPC", "sequence_length": 449, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fcc7f2884bf3cc2c0c98bb10a1bf4c87dcec98761e60c337593712ebc4a31fd9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4JIP9.json", "taxon_id": "3702", "uniprot_accession": "F4JIP9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/taue-pf01925.yaml" } ], "pfam_ids": [ "PF01925" ], "protein_name": "Sulfite exporter TauE/SafE family protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTLFVLFILILCVFAINANQQEEINQESTQQTHQNLLYKVQKWRTSLKDSSDAELKLSPALVVAGVLCFTAALISSASGIGDGFFFIPIMNLVAGIDLKAASSFSAFMVTGGSIANLINNHFGCKKLIDYDLALLLEPCMLLGVSVGVICNKVFPEWLITGLFVVFLMWSSMETCENGHTSWKLSLILREKEDMRDSRLAEVKRRRTIIFFKHLYLKIKKTETKQSFLGRNLGIISIKPCSVEYWILLSLQIPLALVFTILALSRTESLQEQSISNQEGTRLDHQFKRLMFPVMSFLAGLLGGIFGIGGGMIISPLLLRAGIPPQVTAATTSFMVFFSATMSGVQYLLLGMQNTEAAYVFSVICFFASTLGLVFAQKVVPHFRRASIIVFLVGTMMYLTTIVMASFGILVFYIDNDAGKDIGFQLPC", "sequence_length": 428, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f2b6930040f51e1c7e38b3360336c110ac89f5b2a7abf3e86ec9ba82f404e2b6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O49567.json", "taxon_id": "3702", "uniprot_accession": "O49567", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf007909.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007909", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf007909.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transmembrane-protein-taue-like-transmembrane-domain-ipr002781.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002781", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transmembrane-protein-taue-like-transmembrane-domain-ipr002781.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/taue-pf01925.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01925", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/taue-pf01925.yaml" }, { "cited_uniprot_accession": 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"9c740f8f12f0c1c17c9e109782cf92def86702e3420768c36e65df5c884e4035", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVIKLEFEFLLLLPLLIIVGFIVGILGSLFGIGGGFLVAPILTFIFDYFGIPDGVKFAVGTSLFVVFINSIISIFRHAKIKNINWKASITIGIISLVFSYFSGFLVVNFIDSAILKKLFGIFLIANAIYMAKSHHIDKISDREDKLEPFILCGVITGFLSGLFGIGGGIVIIPILAMAKYPVKRAVAISVGVIPLTSIGGLISYLTANTEGYIYNIGYVSIPIALIMAIPIIYSSKLGIKINQKISPKHLRIMLSSILGVMGLFMLL", "sequence_length": 267, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "9c740f8f12f0c1c17c9e109782cf92def86702e3420768c36e65df5c884e4035", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57883.json", "taxon_id": "243232", "uniprot_accession": "Q57883", 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"path": "data/traits/sequence/domain/interpro/mut7-c-rnase-domain-ipr002782.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002782", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mut7-c-rnase-domain-ipr002782.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mut7-c-pf01927.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01927", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mut7-c-pf01927.yaml" } ], "pfam_ids": [ "PF01612", "PF01927" ], "protein_name": "Exonuclease mut-7 homolog", 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"commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cas-cas4-pf01930.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01930", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cas-cas4-pf01930.yaml" } ], "pfam_ids": [ "PF01867", "PF01930" ], "protein_name": "CRISPR-associated exonuclease Cas4/endonuclease Cas1 fusion", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"MAETDGSIPLIPVRMLNEHVYCPRLAYLMWVQGEFSHNEFTVDGVIRHRRVDAGGGVLPSETQEDSRIHARSVSLSSERLGITAKIDLVEGEGAYVSPVDYKRGKRPHVAGGAYEPERVQLCAQGLLLREHGFASDGGALYFVASRERVPVAFDDELIGRTLAAIDEMGRTALSGTMPPPLEDSPKCPRCSLVGICLPDEVRFLSHLSVEPRPIIPADGRGLPLYVQSPKAYVRKDGDCLVIEEERVRVAEARLGETSQVALFGNATLTTAALHECLRREIPVTWLSYGGWFMGHTVSTGHRNVETRTYQYQRSFDPETCLNLARRWIVAKIANCRTLLRRNWRGEGDEAKAPPGLLMSLQDDMRHAMRAPSLEVLLGIEGASAGRYFQHFSRMLRGGDGEGMGFDFTTRNRRPPKDPVNALLSFAYAMLTREWTVALAAVGLDPYRGFYHQPRFGRPALALDMMEPFRPLIADSTVLMAINNGEIRTGDFVRSAGGCNLTDSARKRFIAGFERRMEQEVTHPIFKYTISYRRLLEVQARLLTRYLSGEIPAYPNFVTR", "sequence_length": 559, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "140ff3d4fcb85448a4d274ef4a11fc9c59ccb69cac75e03da6e6ac18f4a6158f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q74H36.json", "taxon_id": "243231", "uniprot_accession": "Q74H36", "uniprot_release": "2026_03" } ], "pfam_id": "PF01930", "short_name": "Cas_Cas4", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { 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"data/traits/sequence/domain/interpro/ribonuclease-hept-like-ipr008201.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008201", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ribonuclease-hept-like-ipr008201.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/trna-nuclease-hept-like-superfamily-ipr037038.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR037038", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/trna-nuclease-hept-like-superfamily-ipr037038.yaml" }, { 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"https://rest.uniprot.org/uniprotkb/Q58943.json", "taxon_id": "243232", "uniprot_accession": "Q58943", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hept-like-pf01934.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01934", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hept-like-pf01934.yaml" } ], "pfam_ids": [ "PF01934" ], "protein_name": "mRNA nuclease HepT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNDIIINKIATIKRCIKRIQQVYGDGSQFKQDFTLQDSVILNLQRCCEACIDIANHINRQQQLGIPQSSRDSFTLLAQNNLITQPLSDNLKKMVGLRNIAVHDYQELNLDIVVHVVQHHLEDFEQFIDVIKAE", "sequence_length": 133, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e263bc1c03891a7e9e7a4020742ad329d45525492d619d1e6a15f756d2fc8b6d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8ECH6.json", "taxon_id": "211586", "uniprot_accession": "Q8ECH6", "uniprot_release": "2026_03" } ], "pfam_id": "PF01934", "short_name": "HepT-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf87-pf01935.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01935", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf87-pf01935.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/has-barrel-pf09378.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09378", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/has-barrel-pf09378.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hera-c-pf05872.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05872", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hera-c-pf05872.yaml" } ], "pfam_ids": [ "PF01935", "PF05872", "PF09378" ], "protein_name": "DNA double-strand break repair helicase HerA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIGYIIGSATINEATAILEQKIRAGYYVILEYDGDKILGLITNVYTGSPLLDDNLNDVKFVQRIKQLEANKIPFFIKARIKLLCKLDGKFTQPDLPPVAGTPVRLASDEELSTVFSAGDVRIGKLIGSNVEVKIRLNPLSRHLAILAATGSGKSNTVAILSQRLVEIGGSILIFDYHGEYYDSTLPNLNIIEPKLNPLYLSVNEFATLLEIRENANIQYRIIRRTFNQLKEEINNEIKEGKTSLAELNSNFFERLKVKIEEEGRNEKRKESKDEVLNKVEDFAERYSDIIDITFGDVINKIKLGKINVVNLSSLDEDAIDAIVAHYLRRILTSRKENKIKKDSGLKFPILTVVEEAHVLLSKDTNTLTKKWAGRIAREGRKFGVGLIIVSQRPKGLDENILSQMTNKIILKIVEPSDKKYVLETSDNLSEDLADGLSSLDTGEAIIIGNVVKLPTIIKIDKFEGKLSGSDPNLTEEWKRAKEEEIVHSDVSDWG", "sequence_length": 495, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc95756f4268a6de497b21d2fdfb1b19a0688ac0ac4e9e456bc79b63d688f803", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F2Z5Z6.json", "taxon_id": "330779", "uniprot_accession": "F2Z5Z6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/helicase-hera-barrel-domain-ipr018538.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018538", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/helicase-hera-barrel-domain-ipr018538.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/helicase-hera-central-domain-ipr002789.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002789", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/helicase-hera-central-domain-ipr002789.yaml" } ], "pfam_ids": [ "PF01935", "PF09378" ], "protein_name": "Probable DNA double-strand break repair helicase HerA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYVMKVVGKTTTTHFTFESLEKIRFGEYVIAKNVDGRDVLGVIKNVVADVEKFVGEVKVIGVLDGNKIIPNRTPILPNSEVRLCDDEILNNIYLTPDGLNIGHLLTRDNVRVYLDTNKLVSRHFAILSITGGGKSNTASVLCRELAKKNGTVIMIDPHGEYISLYHEDMEGKIKVINPIINPVLLAPSEFANLIGIGDNEIEKRVYVEFAYHTVKHECPDAKGIEFIEKIENLLYEWSKIASVGWEIKYYNPLRRNYDRRKLEKEDFVILMSLIDTISKFKLDYALNIGDRDVIEEFEIGKINIVNLSGLEIPQMVTFVGFIAKHLLLKRITYLKSLKDVYSINEEIRRVAQSNLNIIESHYKVVTKPVLLIVEEAHIFIPVNEQNSASLWLGKIAREGRKFGVGLGLVSQRPKQLHPDVLSQTNTKIILKIVEPEDQKYIQRASEELGEDLVKDLASLGIGEAVIVGAAISLPSIVKIDKFDGVYGGKDINIVGEWMGLDDW", "sequence_length": 503, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b29ae2b994857ad8f25778acf8769988a7d558d64caacbf6bec38c7838a97f56", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58824.json", "taxon_id": "243232", "uniprot_accession": "Q58824", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/helicase-hera-barrel-domain-ipr018538.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018538", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/helicase-hera-barrel-domain-ipr018538.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/helicase-hera-central-domain-ipr002789.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002789", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/helicase-hera-central-domain-ipr002789.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/helicase-hera-like-c-terminal-ipr033186.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033186", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/helicase-hera-like-c-terminal-ipr033186.yaml" } ], "pfam_ids": [ "PF01935", "PF05872", "PF09378" ], "protein_name": "Probable helicase MJ1565", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDNNEIIGYTIGETRIDELTFLAKEAPKVGDYVKINYDDSELLGMVESTIQGNMALEDILNIEHLEKIREFEDNSSYYILGKIKVLGDIRDLNKDGALKLPRVPPKPGIPIYRADDELLKKVFGNGHLKIGHLVTREDVEVKLDANKLCSRHLAILAMTGMGKSNTVAVLLRELNKLKATVLVFDMHGEYKDIYCESEKLRVHIIEPKINIYRINDDDLCDLAGVDAQATKQRPYIRKAIKEIKEERKEHDFSTVDDYINAIIGKLEEYKSNDNYKKDESSIQTAIFRLEDMLQFRKNIITLHYNPINDIREHYINIIPMEELDENAVDIVVSYIAKAVLDDRKRIIIDKGRDFAKPIFMIFEEAHLIAPQHRKTRAKHYLSRIAREGRKFGVGLCLVSQRPKTLDAETLSQCSNLIISKLIEPTDQKHVQMASENLSEDLVKQLTSLNIGEAIILGPCIKVPAIVKVDKFDGRYGGEDLNLVELWEKDFINTERLKTDDIEENAFGDDDLFS", "sequence_length": 513, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "94d7250fd3ab31a3d837ee4e539e26b7e8a87622c3bb657cbd3b65c9803e9932", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58960.json", "taxon_id": "243232", "uniprot_accession": "Q58960", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/helicase-hera-barrel-domain-ipr018538.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018538", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/helicase-hera-barrel-domain-ipr018538.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/helicase-hera-central-domain-ipr002789.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002789", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/helicase-hera-central-domain-ipr002789.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/helicase-hera-like-c-terminal-ipr033186.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033186", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/helicase-hera-like-c-terminal-ipr033186.yaml" } ], "pfam_ids": [ "PF01935", "PF05872", "PF09378" ], "protein_name": "Probable helicase MJECL08", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMVINSVVVGTVVASKNVNEFEFVIENQVIDKIKKGEFVITKNTHGDYLLSKITKIVSVNALIGDKSEDASELAKIRGVIYSEEMLNNSSKFLASAKILGVINNESGSIESNVYPINVPQNVYLTKDDLLAKIFSNGSIEVGYLKVRSSTKVKLNAKELCSRHFAVLAMTGAGKSNTIAVLVQELFEKDKGKMNIVIVDPHGEYVKMRNTHILPAKLNPILVPEEHLAKLLGIGENSSVQKSFLVYAALTVKYECKENKKQISGLEYLKKIEEKLVECADKIANSEDKKRIYIEYYDGTRCRXKTVKKDDEMSINRVIEKLRWFINKNKNILGENEGMFDIKSDKINVLPLQKIEDEEAITIVGEFLKRVLKERIKSVHDEIVEIKALEKPTLVIIEEAHLFAAKNLKDRSGYWINRIAKEGRKFGVGLGLVSQRPKELNPTVLSQMNTKIILRIVEPTDQKYILESSENVGEDLLQDLPQLSTGEAIVVGSSLPLPALVKIKKYDGVLGGEDGLKNLKI", "sequence_length": 520, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e1099f937c8aa55b7282f53fe8ac9a3e5f744c51ef7361402c60062d387e76e8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q60270.json", "taxon_id": "243232", "uniprot_accession": "Q60270", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hera-c-pf05872.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05872", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hera-c-pf05872.yaml" } ], "pfam_ids": [ "PF01935", "PF05872", "PF09378" ], "protein_name": "DNA double-strand break repair helicase HerA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEFVGIVRGEASFTSYEFSINPSANVSFGEFVVTKNRDGDLVLGTVRHVKNVNWLLSSVKSNFNSLALDIEEYGESLGENEEVVATVRILGKIEGNELVPNRVPIRNGEYVYKASDDLLQMIYGNDGIEIGTLLLRPNVRIKLDVNELVSRHFAVLAVTGAGKSNAVAVIIKGIVEDVGGTVVVLDPHGDYVNLRLPETGIDLVNIIDGKIRIEDLDPEELADLIGISSSAQIQRHFLSLAWETVKHKNQSLGGESLLEALLDLLNEWISRKTIKYWSEKEGRMKSEDLKSERIETIRGIIFRIRRFLRNYGNIVTSENLVAAIKPGMVNVIDLSPLDENQMKVVVGKFLEAVFEKRVEYEMARKRFEKETSKKKRDEYEEIMTEIESKYPALAYPILVIVEEAHIFAPQGEENDAMRIMGRIAREGRKFGVGLGVVSQRPSKLNEDILSQMNTKIILRIVNPRDQDYVLKASEQLSKDLMDDIAGLGKGEAVIVGQAIKLPALVRIYNFKELRGKAGTGQYGGEDIGILDRWNKMKRNMVNSLDIDIDF", "sequence_length": 551, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b8975160773dbcfb4c60bdde0bc96642bfac502958499c46d4669ec06ef18388", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8U1P0.json", "taxon_id": "186497", "uniprot_accession": "Q8U1P0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf87-pf01935.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01935", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf87-pf01935.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/has-barrel-pf09378.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09378", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/has-barrel-pf09378.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hera-c-pf05872.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05872", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hera-c-pf05872.yaml" } ], "pfam_ids": [ "PF01935", "PF05872", "PF09378" ], "protein_name": "DNA double-strand break repair helicase HerA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIIGYVVGSATTQEANVLLEKKVRSGYYVTLEYDDEKVLGLVTLITTGSPLVDDSLNDIELVQRIKQMGNKIPIYMKAKVKLLCKLDGKLSQPDLPPVAGTPVRLATNEELSTIFSEGTIRIGKLIGSDVEVRIRVNALTRHLAILAATGSGKSNTVAVLSSRLSEVFGSVLIFDYHGEYYESEIKNLNNIEPKINPLNLTPDEFATLLEIRENATIQYRILRRAFKSFLEETKEKLKNGNVNYNELNNNFRNLILKKVDEVSKNEKRKDSKDEVINKIEDFLDRYSEIIDFTAGDVVDKIKIGKVNVINLSSLDEDAIDAIVSHYLRKILTSRKENKMKRKIGLKFPVLVVIEEAHVLLSKDSNTLTKHWAGRIAREGRKFGVGLIIVSQRPKGIDENILSQMTNKIILKMVEPSDKKYVLETSDNLSEDIVEGLSALDTGEAVIVGNIVRMPAIVKIDKFEGKLAGSDPNLIEEWKKAKEEIEEHADVLNWGE", "sequence_length": 495, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "093d86cf4bba881b94c29aa485a029f79785881f18424cc7dca446fa4766dbb7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96YR7.json", "taxon_id": "273063", "uniprot_accession": "Q96YR7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf87-pf01935.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01935", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf87-pf01935.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/has-barrel-pf09378.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09378", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/has-barrel-pf09378.yaml" } ], "pfam_ids": [ "PF01935", "PF09378" ], "protein_name": "DNA double-strand break repair helicase HerA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIIGYVIGQATTQEALILAERPVRLGTYVVLEYDNVKALGLITNVTRGSPMLDDNMNDIEIVQRLKQFNNSIPVYTKAKVKMLCDMNNHFLMPDIPPFAGTPAREAEDEELKSIYSQDGQIRIGSLIGKNVEVKLNINSFARHLAILAATGSGKSNTVAVLSQRISELGGSVLIFDYHGEYYDSDIKNLNRIEPKLNPLYMTPREFSTLLEIRENAIIQYRILRRAFIKVTNGIREKLKEGQIPFSTLNSQFYELMKDELETQGNSDKKSSAKDEVLNKFEEFMDRYSNVIDLTSSDIIEKVKRGKVNVVSLTQLDEDSMDAVVSHYLRRILDSRKDFKRSKNSGLKFPIIAVIEEAHVFLSKNENTLTKYWASRIAREGRKFGVGLTIVSQRPKGLDENILSQMTNKIILKIIEPTDKKYILESSDNLSEDLAEQLSSLDVGEAIIIGKIVKLPAVVKIDMFEGKLLGSDPDMIGEWKKVEESEKIAKGFADFGTEIGD", "sequence_length": 500, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "194aee0a2ba5204decb4ddb224b53fc66b93c3f8ba5e7af3977f728d3a629c9b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q97WG8.json", "taxon_id": "273057", "uniprot_accession": "Q97WG8", "uniprot_release": "2026_03" } ], "pfam_id": "PF01935", "short_name": "DUF87", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/tigr00288-family-nyn-domain-containing-protein-tigr00288.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00288", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/tigr00288-family-nyn-domain-containing-protein-tigr00288.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-the-laba-like-pin-domain-of-synechococcus-cd18726.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd18726", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-the-laba-like-pin-domain-of-synechococcus-cd18726.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nyn-domain-ipr021139.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021139", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nyn-domain-ipr021139.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nyn-pf01936.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nyn-pf01936.yaml" } ], "pfam_ids": [ "PF01936" ], "protein_name": "Uncharacterized protein MJ0482", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSPHKVIYCYLIILYKLSSCHIYYKYIPFRLTVLVNYFLLLNVGEIMWKKLESLTSKIYEKARKRKGEHRIALLIDGPNMLRKEFNIDLDKIREVLSEFGDIVIGRVYLNQYASDKLIEAVINQGFEPKISAGDVDVEMAVDATELVFNPNIDTIAYVTRDADFLPAIRKAKERGKKVIVIGAEPGFSTALQNIADYVIKIGEEFQLDREKLEKKKKNKFLKVEEKQKDKEETENREEP", "sequence_length": 240, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "048417a3e71c44cd5336a35b87d2fe20cc47ad6cb80ce85d4b477bd82a016bd8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57905.json", "taxon_id": "243232", "uniprot_accession": "Q57905", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nyn-pf01936.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nyn-pf01936.yaml" } ], "pfam_ids": [ "PF01936", "PF11608", "PF12872", "PF19687" ], "protein_name": "Meiosis regulator and mRNA stability factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGKGTENPCSRTLGWFHQDNDAKPWLWKFSGCFSRPEQTLPLSSQTKEYMENKKAAVELKDIPSPLHVGSKFFPAVPLPDIRSLQQPKVQLSAIPKVSCCAHCPNEPSTSPMRFGGGSGSSGGSGSLIHTGSLLDSPSTGTVTCQVGSGFAFQSVSSLQNASTRNNLVGLSSDFPSMCVESNLPSCKHLSCCGKLHFQSCHSNVHKLHQFQNLQGCASAGYFPCSDFPSGAPGHLEERLSHSELTPHLCTNSLHLNVAPPVCLKGSLYCEDCLNKPARNSIIDAAKIWPNIPPPSTQPAPPAIPVCNGCGTKGMEKETSLLLATSLGKTASKFGSPEVAVTGQVLETLPPIGVFWDIENCSVPSGRSATTVVQRIREKFFRGHREAEFICVCDISKENKEVIQELNNCQVTVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIILVHKNQASEALLHHANQLIRFEEFISDLPPRLPLKIPQCHTLLYVYNLPANKDGKSISNRLRRLSDNCGGKVLSITGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKHREFFEAKSSNAIADKVKSPKKVKNTKLCLIKDTSEQSPSVKAMPGKVLQANSGSATKTTNIKSLQELCRMESKSGNRNSDHQQGHGRLAALPNSGPTASVPIVKNTGVTEPLYRSSQKKENPSSQSTVNSPVEKKKREETVFQVSYPSAFSKLIASRQVSPLLTSQSWSPRASPLAFNIANPSSGADCPDPFANGVDIQVSNVDYRLSRKELQQLLQEAFSKHGQVKSVELSPHTDYQLKAIVQMRNLHEAICAVNSLHRHKIGSKKILVSLSTGAANKSLSLLSTETMSILQDAPACCLPLFKFIDIYEKKYGHKLNVSDLYKLTDTIAIREQGNGRLVCLLPSNQARQSPLGSSQSHDGSSSNCSPVLFEELEYHEPVCKQHCSNKDFSELVFDPDSYKIPFVVLSLKVFAPQVHSLLQTHQGTVPLLSFPDCYAAEFGDLEITQDSHKGVPLEHFITCIPGVNIATAQNGVKVVKWIHNKPPPPNTDPWLLRSKSPVRNPQLIQFSREVIDLLKTQPSCILPVSNFIPSYHHHFGKQCRVSDYGYSKLIELLEAVPHVLQILGMGSKRLMTLTHRAQVKRFTQDLLKLLKSQASKQVIVRDFSQAYHWCFSKDWDVTEYGVCDLIDIISEIPDTTICLSQQDDDMVICIRKRERTQDEIERTKQFSKDVVDLLRHQPHFRMPFNKFIPSYHHHFGRQCKLAYYGFTKLLELLEAIPEILQVLECGEEKILTLTEVERFKALAAQFVKLLRSQKGNCLMMTDLFTEYAKTFGYTFRLQDYDVSSVSALTQKLCHVVKVADMESGKQIQLINRKSLRSLTAQLLVLLMSWEGDAYLPVDELRRHYETTHSTPLNPCEYGFMTLTELLKSLPYLVEVCTNDKAEEYVKLTSLYLFAKNVRSLLHTYHYQQIFLHEFSMAYNKYVGETLQPKTYGYSSVEELLGAIPQVVWIKGHGHKRIVVLKNDMKNRLSSFDLFSVNHEDQPAVSRQILAVPESHLASELQLRTGTGPSQMEQELLHLASSSPVDLLCAPVPSCLPSPQLRPDPVILKPADLIQFEEHPQEPLGVLVLNQEEKSEVPLPVQKGNLSCDSSPSSPAASPAPPGPSSEAPRPLFSKDAVESPAKKQPKNRVKLAANFSFAPVTKL", "sequence_length": 1730, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ca02b515cb7aa5c8fe430762dfe7674b09fc37482f30277c046bb1e29fef194e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BJ34.json", "taxon_id": "10090", "uniprot_accession": "Q8BJ34", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nyn-pf01936.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nyn-pf01936.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9Y4F3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00076", "PF01936", "PF11608", "PF12872", "PF19687" ], "protein_name": "Meiosis regulator and mRNA stability factor 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a106753053ea1043cb56e554b0627426a0399bb4cb013d04e6e67047adadd502", "sequence_version": 6, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MMEGNGTENSCSRTRGWLQQDNDAKPWLWKFSNCFSRPEQTLPHSPQTKEYMENKKVAVELKDVPSPLHAGSKLFPAVPLPDIRSLQQPKIQLSSVPKVSCCAHCPNEPSTSPMRFGGGGGGSGGTSSLIHPGALLDSQSTRTITCQVGSGFAFQSASSLQNASARNNLAGIASDFPSMCLESNLSSCKHLPCCGKLHFQSCHGNVHKLHQFPSLQGCTSAGYFPCSDFTSGAPGHLEEHISQSELTPHLCTNSLHLNVVPPVCLKGSLYCEDCLNKPARNSIIDAAKVWPNIPPPNTQPAPLAVPLCNGCGTKGTGKETTLLLATSLGKAASKFGSPEVAVAGQVLENLPPIGVFWDIENCSVPSGRSATAVVQRIREKFFKGHREAEFICVCDISKENKEVIQELNNCQVTVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIILVHKNQASEALLHHANELIRFEEFISDLPPRLPLKMPQCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCETKSSNAIADKVKSPKKLKNPKLCLIKDASEQSSSAKATPGKGSQANSGSATKNTNVKSLQELCRMESKTGHRNSEHQQGHLRLVVPTHGNSSAAVSTPKNSGVAEPVYKTSQKKENLSARSVTSSPVEKKDKEETVFQVSYPSAFSKLVASRQVSPLLASQSWSSRSMSPNLLNRASPLAFNIANSSSEADCPDPFANGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGAASKSLSLLSAETMSVLQDAPACCLPLFKFTDIYEKKFGHKLNVSDLYKLTDTVAIREQGNGRLVCLLPSSQARQSPLGSSQSHDGSSTNCSPIIFEELEYHEPVCRQHCSNKDFSEHEFDPDSYKIPFVILSLKTFAPQVHSLLQTHEGTVPLLSFPDCYIAEFGDLEVVQENQGGVPLEHFITCVPGVNIATAQNGIKVVKWIHNKPPPPNTDPWLLRSKSPVGNPQLIQFSREVIDLLKSQPSCVIPISHFIPSYHHHFAKQCRVSDYGYSKLIELLEAVPHVLQILGMGSKRLLTLTHRAQVKRFTQDLLKLLKSQASKQVIVREFSQAYHWCFSKDWDVTEYGVCELIDIVSEIPDTTICLSQQDNEMVICIPKRERTQDEIERTKQFSKDVVDLLRHQPHFRMPFNKFIPSYHHHFGRQCKLAYYGFTKLLELFEAIPDTLQVLECGEEKILTLTEVERFKALAAQFVKLLRSQKDNCLMMTDLLTEYAKTFGYTFRLQDYDVSSISALTQKLCHVVKVADIESGRQIQLINRKSLRSLTAQLLVLLMSWEGTTHLSVEELKRHYESTHNTPLNPCEYGFMTLTELLKSLPYLVEVFTNDKMEECVKLTSLYLFAKNVRSLLHTYHYQQIFLHEFSMAYTKYVGETLQPKTYGHSSVEELLGAIPQVVWIKGHGHKRIVVLKNDMKSRLSSLSLSPANHENQPSEGERILEVPESHTASELKLGADGSGPSHTEQELLRLTDDSPVDLLCAPVPSCLPSPQLRPDPVILQSADLIQFEERPQEPSEIMILNQEEKMEIPIPGKSKTLTSDSSSSCISAAVPVPPCPSSETSESLLSKDPVESPAKKQPKNRVKLAANFSLAPITKL", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/mttase-radical.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01278", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/mttase-radical.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AEI1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00919", "PF01938", "PF04055" ], "protein_name": "tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "26bdd2566d710d030c2dc27ac3e2f2a1d372f29556e44d9ad3a1622431e517b3", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVRGDRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVVRTEDEMGLRVAETPESVIARTRKENDLGVGYYQP", "sequence_length": 474, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "26bdd2566d710d030c2dc27ac3e2f2a1d372f29556e44d9ad3a1622431e517b3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AEI1.json", "taxon_id": "83333", "uniprot_accession": "P0AEI1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/trma-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01230", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/trma-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/trma-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/trma-2.yaml" } ], "pfam_ids": [ "PF01938", "PF05958" ], "protein_name": "tRNA (uracil(54)-C(5))-methyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYEQFEFSFFFFENSDNKVKYKAHLISSIKRWSIITCMRCFWTVQKSIFKARFFACRNFVKKHNYKLISTMTGSTEMVPPTMKHTVDNKRLSSPLTDSGNRRTKKPKLRKYKAKKVETTSPMGVLEFEVNDLLKSQNLSREQVLNDVTSILNDKSSTDGPIVLQYHREVKNVKVLEITSNGNGLALIDNPVETEKKQVVIIPFGLPGDVVNIKVFKTHPYYVESDLLDVVEKSPMRRDDLIRDKYFGKSSGSQLEFLTYDDQLELKRKTIMNAYKFFAPRLVAEKLLPPFDTTVASPLQFGYRTKITPHFDMPKRKQKELSVRPPLGFGQKGRPQWRKDTLDIGGHGSILDIDECVLATEVLNKGLTNERRKFEQEFKNYKKGATILLRENTTILDPSKPTLEQLTEEASRDENGDISYVEVEDKKNNVRLAKTCVTNPRQIVTEYVDGYTFNFSAGEFFQNNNSILPIVTKYVRDNLQAPAKGDDNKTKFLVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLFESIDTPSENTSVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQARDVEYFLKETENGSAHQIESIRGFDFFPQTHHVESVCIMKRI", "sequence_length": 639, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ff78b7f447ccc5f7be400547853f59731d3c0699bb84dd9fdccbcec8ef63e92d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P33753.json", "taxon_id": "559292", "uniprot_accession": "P33753", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tram-pf01938.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tram-pf01938.yaml" } ], "pfam_ids": [ "PF00919", "PF01938", "PF04055" ], "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIRRAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGVSNIMKARVYEELDVPAFTDRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSELDTRVEGVKRIRISSIEASQITDEVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHRLIALSDQLAKEYASQYENEVLEIIPEEAFKETEEENMFVGYTDNYMKVVFKGTEDMIGKIVKVKILKAGYPYNEGQFVRVVEDEITEHMRLSS", "sequence_length": 451, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "00bcb775d7ce84725cbb760cd07245902d3f5d2f566d61fadf86ad6a9c8b06e2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54462.json", "taxon_id": "224308", "uniprot_accession": "P54462", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/trma-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01230", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/trma-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/trma-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/trma-2.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P55135", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01938", "PF05958" ], "protein_name": "23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ff260d7755b448fb61fbaf85125216fe8b6491633fb647ee3384aa6cbdba150f", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK", "sequence_length": 433, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ff260d7755b448fb61fbaf85125216fe8b6491633fb647ee3384aa6cbdba150f", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P55135.json", "taxon_id": "83333", "uniprot_accession": "P55135", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tram-pf01938.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tram-pf01938.yaml" } ], "pfam_ids": [ "PF01938" ], "protein_name": "Uncharacterized protein MJ0660", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFNNKGRRNVRNNEVRRNVPVKEGETYTVTIEDMGRGGDGIARVEGFVVFVPETQKGETVNVKITAVKSKFAFAEKI", "sequence_length": 77, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0b99b016ab8e26b7ee753d735f920663a954706bf451910a24795a903ed83ded", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58074.json", "taxon_id": "243232", "uniprot_accession": "Q58074", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tram-pf01938.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tram-pf01938.yaml" } ], "pfam_ids": [ "PF00919", "PF01938", "PF04055" ], "protein_name": "Probable threonylcarbamoyladenosine tRNA methylthiotransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWLYYLQVVMDMRVYVEGYGCVLNTADTEIIKNSLKKHGFEVVNNLEEADIAIINTCVVRLETENRMIYRINELKNLGKEVVVAGCLPKALKNKVKGFLHIYPREAHKAGEILKNYVEKHYRMPYIEEDINKTLYKKLDYLKPSLITPLPICEGCIGNCSYCIVKIARGGLISYPREKIVNKAKELINKGAKCLLITAQDTACYGFDIGDNLANLLNELTQIKGEFIMRVGMMHAKNAELILDELIEVYQNEKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEFRRKIKNLCFTTDIIVGFPGETEEQFQNTLEVLRELKPDYIHGAKYSQRKGTEAAKMKQIDTKIRKRRSEILDKLRRELSYLNNKKYIGKAMKVLVLDEGKGYTDNFKVVKFEGGEVGEFRKVKITDAKTFGLKGELIL", "sequence_length": 427, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c3072c9a2e3ccf540bf423c348bade1b5924875f85de34a474ded0f1e592ae92", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58277.json", "taxon_id": "243232", "uniprot_accession": "Q58277", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tram-pf01938.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tram-pf01938.yaml" } ], "pfam_ids": [ "PF01938", "PF02310", "PF04055" ], "protein_name": "Uncharacterized protein MJ1620", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKALIIDCLASGDGKRILARDVIGAGPRTVKGILQSEGIEAKITPVEDLDIKDIKKYNLIFISAMTSDFKCVKKLVERIRLKTDSKIIVGGPIANDINILEKIEADISIVGEGEITIRELIKKDFDAEDVKGTTYWDYNEDELKINPLREILTDLKLITPSTEIKDYKNYFSARVYVEVVRGCSNFKRPLLLCTNKKCNLCENGTLKCPLNINPGCGFCSVPSVFGYARSRDEEDILKEVEALLKEGVNRIVLSAPDFLDYKRGEKLINPYFPEPNYEAIESLLSKCKDLADKYNANVLIENIKANLFNEKVAEIFSKYLKTPIYIGCESGDKNHCKLLGRPTTPDDVLKAVKIAKKYNLKAQVYFIYGLPGENEETAKNTVNFMHKIKNYIDKITVYKFRPLPMSAFQNFKPNITKYSLLIRETANKINLEIKKKYIGRVLEVIISERHFRNKRDAIGYLPDSGLMVVVKDGAKFIGKTKKVKIIKAYEKYLEGRILKTWLCKY", "sequence_length": 505, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7bdc5a86467264f6648e5e13bfd491b5fd40f112e871b95f56447f98eddda07d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q59015.json", "taxon_id": "243232", "uniprot_accession": "Q59015", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/mttase-radical.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01278", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/mttase-radical.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5VV42", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00919", "PF01938", "PF04055" ], "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "953bb915470572d6fcacec27790b3308fcde3109b505eda96a209a3c847f7d76", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"https://rest.uniprot.org/uniprotkb/Q8BTW8.json", "taxon_id": "10090", "uniprot_accession": "Q8BTW8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/mttase-radical.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01278", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/mttase-radical.yaml" } ], "pfam_ids": [ "PF00919", "PF01938", "PF04055" ], "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"https://rest.uniprot.org/uniprotkb/Q96SZ6.json", "taxon_id": "9606", "uniprot_accession": "Q96SZ6", "uniprot_release": "2026_03" } ], "pfam_id": "PF01938", "short_name": "TRAM", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/endonuclease-nucs-nf003270.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF003270", "section": "canonical_examples", "url": 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"data/traits/structure/homologous_superfamily/cath/2-70-180-20-2-70-180-20.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.70.180.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-70-180-20-2-70-180-20.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q57678", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01939", "PF21003" ], "protein_name": "Endonuclease NucS", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "87dd4e7b2103a4970eed9b6738222592cc5012dd8aee538e216d0838201ec63a", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MMRLEKVFYLTNPTTKDLENFIDMYVFKYILILLARCKVFYEGRAKSQLEEGDRVIIIKPDGAFLIHKDKKREPVNWQPSGSSIIWEVEDNFFILKSIRRKPKEELKVVISEVYHACAFNCEDYEEINLRGSESEMAEMIFRNPDLIEEGFKPISREYQIPTGIVDILGKDKENKWVILELKRRRADLQAVSQLKRYVEYFKNKYGEDKVRGILVSPSLTTGAEKLLKEENLEFKRLNPPKGSKRDLKHNIKTKKTTVLDEWL", "sequence_length": 263, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "87dd4e7b2103a4970eed9b6738222592cc5012dd8aee538e216d0838201ec63a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57678.json", "taxon_id": "243232", "uniprot_accession": "Q57678", "uniprot_release": "2026_03" } ], "pfam_id": "PF01939", "short_name": "NucS_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf92-pf01940.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01940", "section": "canonical_examples", "url": 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"Pfam:PF01940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf92-pf01940.yaml" } ], "pfam_ids": [ "PF01940" ], "protein_name": "Transmembrane protein 19", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDLNDNICKRYIKMITNIVILSLIICISLAFWIISMTASTYYGNLRPISPWRWLFSVVVPVLIVSNGLKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLSSSKLTKWKGEVKKRLDSEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEIPVDFSKQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSSPRLITTWEKVPVGTNGGVTVVGLVSSLLGGTFVGIAYFLTQLIFVNDLDISAPQWPIIAFGGLAGLLGSIVDSYLGATMQYTGLDESTGMVVNSPTNKARHIAGKPILDNNAVNLFSSVLIALLLPTAAWGFWPRG", "sequence_length": 336, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70c74bedf1b9e50414881342cc5db52b5e5dbb3f62eab9670dce9434b1212a9d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96HH6.json", "taxon_id": "9606", "uniprot_accession": "Q96HH6", "uniprot_release": 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"data/traits/function/pathway/go/vitamin-e-biosynthetic-process-go0010189.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010189", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/vitamin-e-biosynthetic-process-go0010189.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/vitamin-k-biosynthetic-process-go0042371.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042371", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/vitamin-k-biosynthetic-process-go0042371.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf92-pf01940.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf92-pf01940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9SYM0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], 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"MATISSTLLLNSSRSALPLRFPKFSGFSSSSPFARSYRFGRRNLEPLSNGMLSSGSRADGATAAAASMEGVMTEAMKLIQSASPTWKSAVANNLLIFVLGSPLLVTGLSASGIAAAFLLGTLTWRAYGSAGFLLVAAYFVIGTAATKVKMTQKEAQGVAEKRKGRRGPRSVIGSSAAGCVCAFLSIYQVGGAAFSQLFRLGFVSSFCTKVSDTVSSEIGKAYGKTTYLATTFKIVPRGTEGAMSLEGTLAGLLASFFLASVGCFLGQITPPEAAVCVLASQIANLGESIIGASFQDKEGFKWLNNDVVNVINISLGSIVAILMQQFILQNWVK", "sequence_length": 333, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "fd3ce8a7dd706474883845d523e801b5a68e9806e12d9deb4b305bda3198409a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SYM0.json", "taxon_id": "3702", "uniprot_accession": "Q9SYM0", "uniprot_release": "2026_03" } ], "pfam_id": "PF01940", "short_name": "DUF92", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrobaculum islandicum (strain DSM 4184 / JCM 9189 / GEO3)", "origins": [ { 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"MIVIEKVDKTPVVKRLVEIVERKGQGHPDYIADGISEWVSRYLSRYYLEHFGIILHHNVDKTLVVGGQAAPRFGGGEVLQPIYILVSGRATYEVRTKDGVIKVPLGTLVMQAARDWIKQHFRFLDPDTHVVIDYKIGQGSADLVGIYDLGVKSVPLANDTSVGVGYAPLTPLEQLVYKTERLLNSRDFKAKYPEVGEDVKVMGVRVGKEVKLTVAAAMISKLVKDKSHYLSVKEDVKKAVEDLASKVAPEYNIEVVVNAADKPEHGIFYLTVTGTSAEHGDDGMTGRGNRANGLITPMRSMSLEAAAGKNPVSHVGKIYNVVAQRIADKVYNQVKDIIEVYVEIVSQIGKPINEPKILNVEIIKSGELTGEVRNEVEAIAREEIEKITQITDYILRGEVSLY", "sequence_length": 402, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e8d2ab5a816c94557f96f0cadb13d273751f571efa64b28ecc74b579d74d2c5b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1RSD7.json", "taxon_id": "384616", "uniprot_accession": "A1RSD7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanococcus maripaludis (strain C5 / ATCC BAA-1333)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"data/traits/structure/homologous_superfamily/cath/s-adenosylmethionine-synthetase-c-terminal-domain-3-30-300-280.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.300.280", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/s-adenosylmethionine-synthetase-c-terminal-domain-3-30-300-280.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q58605", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01941" ], "protein_name": "S-adenosylmethionine synthase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "efc0551a8614036ecaffeeeb827b2db714f56916f0d91d62d09bd5f1dfd96746", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRNIIVKKLDVEPIEERPTEIVERKGLGHPDSICDGIAESVSRALCKMYMEKFGTILHHNTDQVELVGGHAYPKFGGGVMVSPIYILLSGRATMEILDKEKNEVIKLPVGTTAVKAAKEYLKKVLRNVDVDKDVIIDCRIGQGSMDLVDVFERQKNEVPLANDTSFGVGYAPLSTTERLVLETERFLNSDELKNEIPAVGEDIKVMGLREGKKITLTIAMAVVDRYVKNIEEYKEVIEKVRKKVEDLAKKIADGYEVEIHINTADDYERESVYLTVTGTSAEMGDDGSVGRGNRVNGLITPFRPMSMEAASGKNPVNHVGKIYNILANLIANDIAKLEGVKECYVRILSQIGKPINEPKALDIEIITEDSYDIKDIEPKAKEIANKWLDNIMEVQKMIVEGKVTTF", "sequence_length": 406, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "efc0551a8614036ecaffeeeb827b2db714f56916f0d91d62d09bd5f1dfd96746", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58605.json", "taxon_id": "243232", "uniprot_accession": "Q58605", "uniprot_release": "2026_03" } ], "pfam_id": "PF01941", "short_name": "AdoMet_Synthase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NBRC 12016 / NCIMB 10680 / K1)", "origins": [ { "cited_uniprot_accession": "A5N7K0", "commit": "62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "TraitMech", "path": "data/traits/morphology/spore_forming.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "METPO:1000871", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/TraitMech/blob/62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b/data/traits/morphology/spore_forming.yaml" } ], "pfam_ids": [ "PF01944" ], "protein_name": "SpoIIM", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MLENKALNLINRHIKNNFWLYIISLVCFFTGIVIGIYSVRYMGGFEKSDLLSYLKNFTKVVDSGSVNYKSIFLETLKNNIPIILMVWFLGLTMIGIPVILIIDIIKGFTIGFTMSFVISSMGIKGMWFSFLGVLPQNIIYIPCIIFSSVLAMEFSLMLFKDRARVPWKSHILVRFTSYSMSFLLVCIIMFIGFFMESYLTPNMIKFIVASYMRILL", "sequence_length": 216, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2355bf8c2b48d30074fbc0707c49749e05152668c94cde07158e0fa489cbd016", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5N7K0.json", "taxon_id": "431943", "uniprot_accession": "A5N7K0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/cell-septum-go0030428.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030428", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/cell-septum-go0030428.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-cell-septum-assembly-go1901893.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1901893", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-cell-septum-assembly-go1901893.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-sporulation-resulting-in-formation-of-a-cellular-spore-go0042173.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042173", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-sporulation-resulting-in-formation-of-a-cellular-spore-go0042173.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/stage-ii-sporulation-protein-m-tigr02831.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR02831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/stage-ii-sporulation-protein-m-tigr02831.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spoiim-pf01944.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01944", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spoiim-pf01944.yaml" } ], "pfam_ids": [ "PF01944" ], "protein_name": "Stage II sporulation protein M", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKISYKDMFLRHVKDHLSLYIFVSVLFFMGVIFGAIIVNSMTISQKEDLYYYLSQFFGQLSDGKQASSADMFGQSIFHNAKYLGLMWILGISVIGMPIIFIMIFLKGIVVGFTVGFLVNQMGVSGFFLSFVSVLPQNVLLIPAYLIMGTCAIAFSLKLIRQLFVKRSLHDAPIQWFGRYAFVLLVILFLALISSLFEAYLSPVLMEKLTSRLF", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7a4e0e7f011742268918de6150c17d36a3f6adaff3a446bf8289f72de4091f4b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37873.json", "taxon_id": "224308", "uniprot_accession": "P37873", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spoiim-pf01944.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01944", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spoiim-pf01944.yaml" } ], "pfam_ids": [ "PF01944" ], "protein_name": "Uncharacterized protein MJ0706", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRDAYLMMVLMDALKEIFDLKEILKSPIRNKKVILFVSLVFILSLVLLYILVVNIKYFSYLGDIIFQNFQKHVENLKITLNEDNLHIILAIWKNNLTVCILNYILGIFSLFVIAVNSYILSYVLYKFGAESFIYLVLPHGIIEIPALILSASGGVLFNMGLVNFLINIKFGTKREVLYYIKESLKLLILSIILFIVAGIVEGTITFKIAKIMFS", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c5828cec150a13f0358c740c5d986d34f12bf04ad5a3cfd8032220a8d041f5ba", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58117.json", "taxon_id": "243232", "uniprot_accession": "Q58117", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spoiim-pf01944.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01944", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spoiim-pf01944.yaml" } ], "pfam_ids": [ "PF01944" ], "protein_name": "Uncharacterized protein MJ0793", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIPIILTLMLFSLGFIFGFISINNLSKINDKDLSNYIPNIQFNFPSILTNNLKVIFLMLAGSITFGLSTFINLIFNGFNVGVLIGSISLTNEPLKLITALILPHGIFEISAMLISAVAGFKIPYKVTLYLLDKKEKPLTEEDIKDFLKLSLISIILIVIAAFIEVYITPKIATYLLT", "sequence_length": 178, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1d8459be81289fa980fc74209783630383d1196c0e9b808820a977a289143859", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58203.json", "taxon_id": "243232", "uniprot_accession": "Q58203", "uniprot_release": "2026_03" } ], "pfam_id": "PF01944", "short_name": "SpoIIM", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/4-1-ec4-1----.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:4.1.-.-", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/enzymatic_activity/ec/4-1-ec4-1----.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rv2949c-like-pf01947.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01947", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rv2949c-like-pf01947.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/chorismate-pyruvate-lyase-ubic-transcription-regulator-associated-doma-ipr028978.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/chorismate-pyruvate-lyase-ubic-transcription-regulator-associated-doma-ipr028978.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/chorismate-lyase-like-3-40-1410-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.1410.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/chorismate-lyase-like-3-40-1410-10.yaml" } ], "pfam_ids": [ "PF01947" ], "protein_name": "Putative lyase MJ0807", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQKTKLRLIFMIIYKEIAKLNKTFPLLNEEKILLGTDGSVTNILEILFEGECRVETINQKIVANTNYREVILKVNNIPLVYAVSKTPFKNIEEENLREEIKRDLLSADIPIGKIIRKHNLETRREIKYIGIAEIDDYLKSLLKTNYSRLPKRTYNIIYKNKVLMEITEIFAVRGKLVKNTYSID", "sequence_length": 184, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "34bf0ed11df9ca9b6201fd6bf6a8bc1882828cf74be0084b0098aa4b4305737d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58217.json", "taxon_id": "243232", "uniprot_accession": "Q58217", "uniprot_release": "2026_03" } ], "pfam_id": "PF01947", "short_name": "Rv2949c-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321 / PZ6)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/endo-du-pf01949.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01949", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/endo-du-pf01949.yaml" } ], "pfam_ids": [ "PF01949" ], "protein_name": "UPF0215 protein Pars_0148", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIAESFRLEDGFSVYAGVRATRDAVVEDAAFAVAKLGGADGTDAAEKIVAALIRPDVSIIMLDGCIVSFYNWIDGEALYAKFQKPVACYVFEEPEGRVEEAVRKLFPDWPDRLRAIEKLGSPTPYYTKAGYKIYVRSWGIDPIYAGKAAELAMKLGKMPEPLRVARIMAAGARALLNTLGLRLVNGH", "sequence_length": 188, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "196adb56ad1f96ee82bbef98dfb1a385fa54670bf60a292afe5b45e05ca908f0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4WH96.json", "taxon_id": "340102", "uniprot_accession": "A4WH96", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Nanoarchaeum equitans (strain Kin4-M)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/endo-du-pf01949.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01949", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/endo-du-pf01949.yaml" } ], "pfam_ids": [ "PF01949" ], "protein_name": "UPF0215 protein NEQ431", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKFARFIGIDDGYFVRNVHKKTKLIGAITKHTILDGVLSREITIDGDDVSEKIIDMIKNSNHYYQIRGIILYGITFAGFNIADVELIYKNLGLPIIIVMERPPKDIFYKAIEKYKPNGIELIKKAGPIYKTKTPFGYTYYQVYGIDKDTASNIINNLAIVSKIPEPARVAHMIARGVTKGDSSKPRAGGDSNPGPAG", "sequence_length": 198, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bf97bc1a775db2692960c3042dc67fb29677fa06f147df06d11e8931a653f423", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P61151.json", "taxon_id": "228908", "uniprot_accession": "P61151", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/archaeoglobus-fulgidus-dsm-4304-superfamily-3-30-2170-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.2170.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/archaeoglobus-fulgidus-dsm-4304-superfamily-3-30-2170-10.yaml" } ], "pfam_ids": [ "PF01949" ], "protein_name": "UPF0215 protein MJ1150", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLMKDEVEVIGFDDAPFNKADKVCILIGTYMRGNRIIDGIYFRKFKKDGMDVTEKIIDIVKEKHYKKIKVIFLAGITFGGFNIADLWEINKETEKPVIVVIDKYPNKEKIFLALKKYFDDADERIKLINSFPEPEKMENIYVQYVGADKEFVKNVIKKTKLKSKIPECLRISHLIGRGFLGLR", "sequence_length": 184, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "72fde75d0f418b48ba8ed5d6b441a3ba198a11126652f9f5e01828cfc5a6e2be", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58550.json", "taxon_id": "243232", "uniprot_accession": "Q58550", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/endo-du-pf01949.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01949", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/endo-du-pf01949.yaml" } ], "pfam_ids": [ "PF01949" ], "protein_name": "UPF0215 protein MM_1007", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSDFHVKPEIRILGIDDSALLNEKVMIVGTVFRGGDWIDGVLRSEITRDGLDATEVMVTMIKNSRHHNQLRVIMLDGITYGGFNVVDIEELYRETGLPVIVIMRSCPDFEKIRSALKHFSDGEERWKIIKKAGKIEKLITGRNGTPIYIQKAGIGAKNVEKIIRLTSIRSSIPEPLRVAHLIATGITLGESRGKA", "sequence_length": 196, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "090ad4ced167b9f3fa296d3d56fde31710ccdb936742c4c731d2ddd8422fd21f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8PY57.json", "taxon_id": "192952", "uniprot_accession": "Q8PY57", "uniprot_release": "2026_03" } ], "pfam_id": "PF01949", "short_name": "Endo_dU", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cenarchaeum symbiosum (strain A)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fbpase-3-pf01950.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fbpase-3-pf01950.yaml" } ], "pfam_ids": [ "PF01950" ], "protein_name": "Fructose-1,6-bisphosphate aldolase/phosphatase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRITVSAIKADVGGIGGHTLPSSGLLDAVRRKVSSSSLLIDHYIGYCGDDVHIVMTHTRGTDNSDIHKLAWDAFMEGTRVAKEEGLYGAGQDLLRDSFSGNVKGMGPGVAELEFEERANEAFTVFAADKTEPGAFNYPFYRMFVDSLSNTGLIVNKSLAEGVVINIMDVSKARTARLVLWEDKPTIEAALMYPGRFVVSSVETRDGEPIASASTDRLHNIAGTYVGKDDPICLVRTQKRFPATEEAGSCFNNPHYVAGNTRGSHHMPLMPVRLNSPASINFCIPIVEALVFSMHEGRLTGPFDGFSTPDWDDVRRTATRRAHAMRRQGFVHPATLVPDELEYAEGYRSRMDVLDSKMVPLKDSGPAGTGRAYEDPD", "sequence_length": 376, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "43568fe0a00e10a1c8b8649efa82323f4e204dc91e030d2be7bce35a56ab70c1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A0RV30.json", "taxon_id": "414004", "uniprot_accession": "A0RV30", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fbpase-3-pf01950.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fbpase-3-pf01950.yaml" } ], "pfam_ids": [ "PF01950" ], "protein_name": "Fructose-1,6-bisphosphate aldolase/phosphatase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRVTVSIIKADVGGFPGHAHVHPKMLEYAAAKLKEAQKRGVIIDYFVYNVGDDISLLMTHTKGEDNKDIHGLAWETFKEVTDQIAKRFKLYGAGQDLLKDAFSGNIRGMGPQVAEMEFEERPSEPIIAFAADKTEPGAFNLPLYKMFADPFTTAGLVIDPSMHEGFIFEVLDVVEHKVYLLKTPEDAYSLLGLIGTTGRYIIRKVFRRADGAPAAANSVERLSLIAGRYVGKDDPVLLVRAQSGLPAVGEVLEAFAHPHLVHGWMRGSHAGPLMPARFISVDPERRIAIGPKMTRFDGPPKVGALGFQLHEGYLEGGVDLFDDPAFDYVRQTAAQIADYIRRMGPFQPHRLPPEEMEYTALPKILAKVKPYPADQYEKDRKKYIEAVVKGAKVEESQHD", "sequence_length": 399, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a0f01057a3fab07ba8bcd4e209ce0aacfdf6826e130f3323e97d4dfad8e52d3e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B1YAL1.json", "taxon_id": "444157", "uniprot_accession": "B1YAL1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fbpase-3-pf01950.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fbpase-3-pf01950.yaml" } ], "pfam_ids": [ "PF01950" ], "protein_name": "Fructose-1,6-bisphosphate aldolase/phosphatase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTTISVIKADIGSLAGHHIVHPDTMAAANKVLASAKEQGIILDYYITHVGDDLQLIMTHTRGELDTKVHETAWNAFKEAAKVAKDLGLYAAGQDLLSDSFSGNVRGLGPGVAEMEIEERASEPIAIFMADKTEPGAYNLPLYKMFADPFNTPGLVIDPTMHGGFKFEVLDVYQGEAVMLSAPQEIYDLLALIGTPARYVIRRVYRNEDNLLAAVVSIERLNLIAGKYVGKDDPVMIVRLQHGLPALGEALEAFAFPHLVPGWMRGSHYGPLMPVSQRDAKATRFDGPPRLLGLGFNVKNGRLVGPTDLFDDPAFDETRRLANIVADYMRRHGPFMPHRLEPTEMEYTTLPLILEKLKDRFKKESDVYKAKESIYAKEESQGHD", "sequence_length": 384, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e17a8f60da5351fd33f016300e8ea63d08bbc8a1f321b18affcb9604125be385", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F9VMT6.json", "taxon_id": "273063", "uniprot_accession": "F9VMT6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/fructose-1-6-bisphosphate-aldolase-phosphatase-nf041126.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF041126", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/fructose-1-6-bisphosphate-aldolase-phosphatase-nf041126.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/fructose-1-6-bisphosphatase-class-v-superfamily-ipr036076.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036076", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/fructose-1-6-bisphosphatase-class-v-superfamily-ipr036076.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q57747", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01950" ], "protein_name": "Fructose-1,6-bisphosphate aldolase/phosphatase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ea273e0944c168435513e122ef4a69baf47e6499bd92cea30a1db750aa8b392b", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSRMENNKVTISVIKADVGGLCGHTLAPDELLEACEAVLEEAVDEIILDYYVTRCGDDIDLIMSHKLGCDNEKVHGLAWRAFEEATKVAKELKLYGAGQDLLADSFSGNVRGMGPGCAEMEFVERKSEPIVVFCCDKTDPTAFNYPLFKMFADPFNTAGLVFDPSMISGFKFEVHDVVGHKKVFLDTPEEMYMLLALIGDYEKYAIKRVYRRRDNEIAAVVSTEKLNYIAGEYVGKDDPVAIVRAQSGFPAVGEVLEPFANPHFVPGWMRGSHWGPLMPVGEEDATPTRFDGPARIIALGFQVCDGMLIGPNDLFADKGFDKAREKALEMADIIRRMGPFQPHRLPATMMEYTTVPKVLEALEDRFIPLEGLELIEEGGITRKDRGDVE", "sequence_length": 389, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ea273e0944c168435513e122ef4a69baf47e6499bd92cea30a1db750aa8b392b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57747.json", "taxon_id": "243232", "uniprot_accession": "Q57747", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/aldolase-kdpg-khg-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00159", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/aldolase-kdpg-khg-1.yaml" } ], "pfam_ids": [ "PF01950" ], "protein_name": "Fructose-1,6-bisphosphate aldolase/phosphatase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVGDKITISVIKADIGGWPGHSRVHPQLVETAEDVLSKAVEDGTIIDFYVATCGDDLQLIMTHKRGVDSPDIHGLAWKAFEEATKVAKELGLYGAGQDLLKDAFSGNVRGMGPGVAEMEITLRKSEPVVTFHMDKTEPGAFNLPIFRMFADPFNTAGLIIDPKMHMGFRFEVWDILEHKRVILNTPEELYDLLALIGAKSRYVIKRVYPKPGHPIPENEPVAVVSTEKLYEVAGEYVGKDDPVAIVRAQSGLPALGEVLEPFAFPHLVSGWMRGSHNGPLMPVPMHQANPTRFDGPPRVVALGWQISPEGKLVGPVDLFDDPAFDYARQKALEITEYMRRHGPFEPHRLPLEEMEYTTLPGVLKRLTDRFEPIE", "sequence_length": 375, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e9db5279ca9cdc9564647d2fc0fef0ebfdd8f2d09083dc1176372e0927092a8b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NKR9.json", "taxon_id": "69014", "uniprot_accession": "Q8NKR9", "uniprot_release": "2026_03" } ], "pfam_id": "PF01950", "short_name": "FBPase_3", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/archease-pf01951.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/archease-pf01951.yaml" } ], "pfam_ids": [ "PF01951" ], "protein_name": "tRNA-splicing ligase-activating factor archease", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALEGEDVRDYNLTEEQKAIKAKYPPVSRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAMFGYMTDTGTVEPLQTIEVETQGDDLQSLLFHFLDEWLYKFSADEFFIPREVKVLNIDQRNFKIRSIGWGEEFSLSKHPQGTEVKAITYSAMQVYNEEKPEVFVIIDI", "sequence_length": 167, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "57d2fe073ac69c93210ad36c26121a624a5f03556170bedd05f548935ab561a8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q2YDE7.json", "taxon_id": "9913", "uniprot_accession": "Q2YDE7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/protein-guanylyltransferase-activity-go0044600.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044600", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/protein-guanylyltransferase-activity-go0044600.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mrna-splicing-via-endonucleolytic-cleavage-and-ligation-go0070054.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070054", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mrna-splicing-via-endonucleolytic-cleavage-and-ligation-go0070054.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/rna-splicing-via-endonucleolytic-cleavage-and-ligation-go0000394.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000394", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/rna-splicing-via-endonucleolytic-cleavage-and-ligation-go0000394.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/trna-exon-ligation-go0000968.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000968", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/trna-exon-ligation-go0000968.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/archease-domain-ipr023572.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/archease-domain-ipr023572.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/archease-pf01951.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/archease-pf01951.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": 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"uniprot_release": "2026_03" } ], "pfam_id": "PF01955", "short_name": "CbiZ", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/emc-complex-go0072546.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0072546", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/emc-complex-go0072546.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ubid-c-pf20696.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20696", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ubid-c-pf20696.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ubid-pf01977.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01977", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ubid-pf01977.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/ubid-c-terminal-domain-like-3-40-1670-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.1670.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ubid-c-terminal-domain-like-3-40-1670-10.yaml" } ], "pfam_ids": [ "PF01977", "PF20696" ], "protein_name": "Anhydromevalonate phosphate decarboxylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MREIINKLNPIIIDKADKKFGVSRILKKYDGKPVYIKDVNGFEVVGNLCSRETLSKIFNVKKEDFIFFMLDAMEKEKEGKLKINNKLKEKYIVEIPENIKNWPIPIYYEKDAGAYITSGVVVVYDKDYGYNLSIHRILVKDDYLVIRMVEQRHLHFLYNKALKEKGYLDVAIVIGVHPAVLLAGSTSADITFDELKFAAALLGGEIGVFELDNGLLVPEAEFIIEGKILPEVDDEGPFVDITGTYDIVRKQPIIKIEKLYRKEKPIFHALLPGGIEHKTLMGMPQEPRILKGVRNTVPTVKNIVLTEGGCCWLHAVVQIEKRTEGDGKNAILAAFASHPSLKHVIVVDDDINIFDINDVEYAIATRVQGDKDIVIISGAKGSSLDPSSDLKNKLTAKVGVDATMSLIKGREHFERAKIPDK", "sequence_length": 421, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4019309cdd8224de9da03b8310ab629721a829ee326ad4ebfd7b554b8849df63", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58533.json", "taxon_id": "243232", "uniprot_accession": "Q58533", "uniprot_release": "2026_03" } ], "pfam_id": "PF01977", "short_name": "UbiD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/middle-phospholipase-d-like-domain-of-the-transcriptional-regulator-tr-cd09124.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09124", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/middle-phospholipase-d-like-domain-of-the-transcriptional-regulator-tr-cd09124.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transcription-regulator-trmb-c-terminal-ipr021586.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021586", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transcription-regulator-trmb-c-terminal-ipr021586.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transcription-regulator-trmb-n-terminal-ipr002831.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transcription-regulator-trmb-n-terminal-ipr002831.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trmb-ebd-n-pf11495.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11495", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trmb-ebd-n-pf11495.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trmb-pf01978.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trmb-pf01978.yaml" } ], "pfam_ids": [ "PF01978", "PF11495" ], "protein_name": "Uncharacterized protein YrhO", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKENMLDILKNLNFTEYESKAYLALLQESPLTGYAVAKKSGVPRSKIYEVLESLVIRGDVFVSHGNTPQYVPVPAKELIKNRRLKAEEHFDQAEKYFEKFEQTANDRENIWNITGRSEILEKVKACILSAKKRILLEIWKEDFKEIEAELKQAAEQGVIVTIIAYGDIVSDFANVYLHDMSSEITEEYDGRWLVYSGDDSEVVAGIVSLGNDSRAAWTMHVGLVMPITEVIIHDLYLMEILKKHRELLEESFGKNLIQLRRKFSIHSDFKKHYLE", "sequence_length": 275, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "41a4a73144218a152b13f5471611ee2699d1201b1dae2673010f1f0928bc26d0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O05405.json", "taxon_id": "224308", "uniprot_accession": "O05405", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transcription-regulator-trmb-n-terminal-ipr002831.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transcription-regulator-trmb-n-terminal-ipr002831.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trmb-pf01978.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trmb-pf01978.yaml" } ], "pfam_ids": [ "PF01978" ], "protein_name": "Uncharacterized protein MJ1082", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKEFIINRLKKFTIEDLMRCILGLQEIEIRVYFDLLENGEGSVLEIAERVNRDRTTVQKALRSLMNCGLVDRRKVTEKVGYKYIYNAVDLDRVSDIIEELLDDWYQNVKKWLTYFRENRK", "sequence_length": 120, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9068313b11bfd041d18fe84069227ab665a4546e92cfc8f858b85bfc3d1bc3ec", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58482.json", "taxon_id": "243232", "uniprot_accession": "Q58482", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transcription-regulator-trmb-n-terminal-ipr002831.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transcription-regulator-trmb-n-terminal-ipr002831.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trmb-pf01978.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trmb-pf01978.yaml" } ], "pfam_ids": [ "PF01978" ], "protein_name": "Uncharacterized protein MJ1503", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKLLLKTPCTTWTFDSLMACVFGIKVSDVKVYFDILKNGPSKINDIAERINRDRSTVQRAVQNLMNAGLVKRKQVNIKDGGYYYVYEAIPFEETKKIIKKTMEEWCNNMKKWVEELEFEDVVKEYLENIEE", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "53cb5a279ddc3e47006f26cbb5e5167b1243007dd9bb4de38601313a42bd91f1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58898.json", "taxon_id": "243232", "uniprot_accession": "Q58898", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fist-c-domain-ipr019494.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019494", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fist-c-domain-ipr019494.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fist-domain-n-terminal-ipr013702.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fist-domain-n-terminal-ipr013702.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transcription-regulator-trmb-n-terminal-ipr002831.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transcription-regulator-trmb-n-terminal-ipr002831.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trmb-pf01978.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF01978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trmb-pf01978.yaml" } ], "pfam_ids": [ "PF01978", "PF08495", "PF10442" ], "protein_name": "Uncharacterized protein MJ1623", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIYIHKKIKNPIKDGIEIGEEIKRNVGRASLIIFITSILERDKLKQVFDGMKQHIPLDNLIGCSTGGTFSGKDYIKEDGVLILAFDEYYKSAISCEKVDREAEYVGKKIADKIKTCIRDKYPKLDIDDNFLGFVFFDWNVDSEQEILDVLGRELTIPIIGGTAADDGSFDKFFQIYKGEVVKDCCVFGVVGGKLKFDLIYGHGYEPTDIYARVTKAEGKVVYELDGKPAYQRYLEMLSEYTKLPMDIIKKYFYRDLRRLDFYLVHPLGFMDINGNYITAFLERVEENTLVFRRDILEGSFLVLMKTDIEKQVKSIVDELKKAEDFENPLIFINECYGREVLKNSMFREFEEDILKYFLNFYKAGKKVEEYVIEDNCIGWLSYGETIAKDLIRFHNNLSFTGVIFELSQSSNINWREELKNFNFEDDEIEVIVNLINKQLTAKELLQLTNLSQTKLYHILNKLEKEGIIKSVSGKPKLYYIDNIKEILQKTHEKIEHENMVKKIKRKKLLRLL", "sequence_length": 512, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "982b84ce79fdb8a554c2fbd87b3468095668d29fd6c6e5f560841a1cf14867f1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q59017.json", "taxon_id": "243232", "uniprot_accession": "Q59017", "uniprot_release": "2026_03" } ], "pfam_id": "PF01978", "short_name": "TrmB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fmde-pf02663.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02663", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fmde-pf02663.yaml" } ], "pfam_ids": [ "PF01980", "PF02663" ], "protein_name": "Probable S-adenosyl-L-methionine-binding protein AF_0433", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMLVQLRQVGVIRSPYKNFSKAPHQGRFSKETVEIEIFPEFEDGLKDIETCTHLIVLYWLDRANRDALLVVPPHDSREHGVFATRSPHRPNPIGFAVVELLERDGRVLKVKGLDALDGTPVVDIKPYSSTIDSVGNAKIGWFEEANPQSKLTRLLLRAKEFHGHICPFVALGVRMSVIAMEKLGVEEDAMASVGEDILAIVECNNCLTDGVQVATGCTLGNNSLIYLDLGKNALTIVRRKDWKGVRVYVNAENVRKYFSKEALELFNKVIVRREGSEEDAKRLSEFWEETGWKMLEIPEEEFKVEFVEVQPIERAPIFENKRCEKCGELAMATRVKDGLCLRCAGSYYAVVGRGIVKFDGEMREVV", "sequence_length": 366, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6e93f40de2a9c553cea40246f3bdc2d77fc78f0c028deefe16718199d4890e42", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O29816.json", "taxon_id": "224325", "uniprot_accession": "O29816", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", 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"b7812db3275dfecdc4694d9ad9ed20d831c1631055390fe91931fc5311657130", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CAF9.json", "taxon_id": "3702", "uniprot_accession": "Q9CAF9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/mitochondrial-large-ribosomal-subunit-binding-go0140978.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/mitochondrial-large-ribosomal-subunit-binding-go0140978.yaml" }, { "cited_uniprot_accession": "", "commit": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/ribosome-silencing-factor-tigr00090.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rsfs-pf02410.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02410", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rsfs-pf02410.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/nucleotidyltransferase-superfamily-ipr043519.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR043519", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/nucleotidyltransferase-superfamily-ipr043519.yaml" } ], "pfam_ids": [ "PF02410" ], "protein_name": "Mitochondrial assembly of ribosomal large subunit protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGPGWSPARRLWPLLWRRAVFQRAGPAMASVPWLPRLAERWLPARPATCLTPSLTRGLHHGPQPEERTAGDARLQPGPADHIGAKFDIDMLVSLLRQENARDICVIQVPPEMRYTDYFVIGSGTSTRHLHAMVHYLVKMYKHLKCRSDPYVKIEGKDADDWLCVDFGSMVIHLMLPETRETYELEKLWTLRSFDDQLAQIAAETLPEDFILGLEDDTSSLTPVEFKCK", "sequence_length": 228, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c91781413ba50260b5af10de0e9d5e0b5e178c8a5bf0b6c88ce43717285139b3", "sequence_version": 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"ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rsfs-pf02410.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02410", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rsfs-pf02410.yaml" } ], "pfam_ids": [ "PF02410" ], "protein_name": "Protein Iojap, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASSTGLTVAGALLAGDFRLPAVSSLIPRKTSSSLSCLSNRDLSSPYNCCWRLSRGKILTSLSNSRKFAVGKEAEDGFLSNVSEDTDEMFDDLFNKYGKVVFRSTDVKSPTAEVDDDAESLAFAVELAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRMRDLAEKKYGKVANGDVKPNSWTLLDFGDVVIHLFLPPQRTFYNLEDFYGNAMQIELPFEDQSQPRN", "sequence_length": 238, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f13de951517d6b994b8adcf8b445fd8f25f404f18ac57d24de2dba87cb280cf0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LDY9.json", "taxon_id": "3702", "uniprot_accession": "Q9LDY9", "uniprot_release": "2026_03" } ], "pfam_id": "PF02410", "short_name": "RsfS", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 11, "discovery_scanned": true, "example_count": 11, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage lambda", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/caudo-tap-n-pf28596.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28596", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/caudo-tap-n-pf28596.yaml" } ], "pfam_ids": [ "PF02413", "PF28596" ], "protein_name": "Tail fiber assembly protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFRMSEQPRTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTDIAPPDIPAGFVAVFNSDEASWHLVEDHRGKTVYDVASGDALFISELGPLPENFTWLSPGGEYQKWNGTAWVKDTEAEKLFRIREAEETKKSLMQVASEHIAPLQDAADLEIATKEETSLLEAWKKYRVLLNRVDTSTAPDIEWPAVPVME", "sequence_length": 194, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a50767f0aca28920a62d50218bb34c744bb32ad3d5e1e99ddc4b3b2c1ee24ae7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P03740.json", "taxon_id": "2681611", "uniprot_accession": "P03740", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bacteriophage-t4-gp38-tail-fibre-assembly-ipr003458.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bacteriophage-t4-gp38-tail-fibre-assembly-ipr003458.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/caudo-tap-n-pf28596.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28596", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/caudo-tap-n-pf28596.yaml" } ], "pfam_ids": [ "PF02413", "PF28596" ], "protein_name": "Prophage tail fiber assembly protein homolog TfaE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHKAILNSDLIATKAGDVTVYNYDGETREYISTSNEYLAVGVGIPACSCLDAPGTHKAGYAICRSADFNSWEYVPDHRGETVYSTKTGESKEIKAPGDYPENTTTIAPLSPYDKWDGEKWVTDTEAQHSAAVDAAEAQRQSLIDAAMASISLIQLKLQAGRKLTQAETTRLNAVLDYIDAVTATDTSTAPDVIWPELPEA", "sequence_length": 200, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fd8c45ae91c8c859b3d487cc6a3c27df70e479dd8971ec3196bc53feee79e60c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P09153.json", "taxon_id": "83333", "uniprot_accession": "P09153", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bacteriophage-t4-gp38-tail-fibre-assembly-ipr003458.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bacteriophage-t4-gp38-tail-fibre-assembly-ipr003458.yaml" } ], "pfam_ids": [ "PF02413" ], "protein_name": "Uncharacterized protein YmfS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIYCCLNTVGFFMDGCGVIPPDSKEITAEHWQSLLKSQAEGGVIDFSVFPPSIKEVIRTHDDEVADANFQKQMLISDATDFINSRQWQGKAALGRLKEDELKQYNLWLDYLEALELVDTSSAPDIEWPTPPAVQAR", "sequence_length": 137, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "680aab4f5e23831638ead002b9a852f8a9b0d257cd3050d289705320533dbd67", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P09154.json", "taxon_id": "83333", "uniprot_accession": "P09154", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage Mu", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/caudo-tap-pf02413.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02413", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/caudo-tap-pf02413.yaml" } ], "pfam_ids": [ "PF02413" ], "protein_name": "Tail fiber assembly protein U'", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMHLKNITAGNPKTKEQYQLTKQFNIKWLYTEDGKNWYEEQKNFQPDTLKMVYDHNGVIICIEKDVSAINPEGANVVEVPDITANRRADISGKWMFKDGVVIKRTYTEEEQRQQAENEKQSLLQLVRDKTQLWDSQLRLGIISDENKQKLTEWMLYAQKVESTDTSSLPVTFPEQPE", "sequence_length": 177, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5bbc9550a43f28ba6e9a7e573d2c2f3b3dac8fec27d6b3a90b7c96e6a532afe4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DJY5.json", "taxon_id": "2681603", "uniprot_accession": "P0DJY5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bacteriophage-t4-gp38-tail-fibre-assembly-ipr003458.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bacteriophage-t4-gp38-tail-fibre-assembly-ipr003458.yaml" } ], "pfam_ids": [ "PF02413", "PF28596" ], "protein_name": "Prophage tail fiber assembly protein homolog TfaQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFRMSEQPRTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTDIAPPDIPAGFVAVFNSDESSWHLVEDHRGKTVYDVASGDALFISELGPLPENVTWLSPEGEFQKWNGTAWVKDTEAEKLFRIREAEETKNNLMQVASEHIAPLQDAADLEIATEEEISLLEAWKKYRVLLNRVDTSTAQDIEWPALP", "sequence_length": 191, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8df1301ec90d2fa9393ae1fad561c276f01c8ffde5d8a1d8c6f04814daa427f0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76155.json", "taxon_id": "83333", "uniprot_accession": "P76155", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bacteriophage-t4-gp38-tail-fibre-assembly-ipr003458.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bacteriophage-t4-gp38-tail-fibre-assembly-ipr003458.yaml" } ], "pfam_ids": [ "PF02413" ], "protein_name": "Protein TfaX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQEFSEYIAPLQDAVDLEIATEEERSLLEA", "sequence_length": 61, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6996cfc6840668ed35d8bdb4a8ff24e480c6dca51ecd25541165c271171e4dad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P77087.json", "taxon_id": "83333", "uniprot_accession": "P77087", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bacteriophage-t4-gp38-tail-fibre-assembly-ipr003458.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bacteriophage-t4-gp38-tail-fibre-assembly-ipr003458.yaml" } ], "pfam_ids": [ "PF02413", "PF28596" ], "protein_name": "Prophage tail fiber assembly protein homolog TfaR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFRMSEQPRTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTDIAPPDIPAGFVAVFNSDESSWHLVEDHRGKTVYDVASGNALFISELGPLPENVTWLSPEGEFQKWNGTAWVKDTEAEKLFRIREAEETKNNLMQVASEHIAPLQDAADLEIATEEEISLLEAWKKYRVLLNRVDTSTAQDIEWPALP", "sequence_length": 191, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c87998ceade70150ab819fe6f54195c1927c2610a844bb0f87f750ecce07cfa3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P77163.json", "taxon_id": "83333", "uniprot_accession": "P77163", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bacteriophage-t4-gp38-tail-fibre-assembly-ipr003458.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bacteriophage-t4-gp38-tail-fibre-assembly-ipr003458.yaml" } ], "pfam_ids": [ "PF02413" ], "protein_name": "Putative protein TfaS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MILDRHITSRGYVCMRPATIAPLTPYDKWDGEKWVTDTEAQHSVAVDAAEAQRQSLIDTAMASISLIQLKLQAGRKLMQAETSRLNTVLDYIDAVTATDTSTAPDVIWPELPEE", "sequence_length": 114, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "616194d24eab1ee30a400020b72b4c14269bfdc7e761083cc30f3ac7e776af0e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P77326.json", "taxon_id": "83333", "uniprot_accession": "P77326", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bacteriophage-t4-gp38-tail-fibre-assembly-ipr003458.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bacteriophage-t4-gp38-tail-fibre-assembly-ipr003458.yaml" } ], "pfam_ids": [ "PF02413" ], "protein_name": "Uncharacterized protein YfdK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNYIYSATTNSFYPLEMKEDYTQAGSWPDDAVEVDEQVYIEFSGLPPKGKIRIAGENGFPAWSEIPPPTHEEQIAAAELKKQQLINQANDYMNSKQWAGKAAIGRLKGEELAQYNLWLDYLDALELVDTSSAPDIEWPTPPAVQAR", "sequence_length": 146, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ae9a82afd15c5008e9e1ac16592576a9291cd00716b1faec4eec60ea9df05913", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P77656.json", "taxon_id": "83333", "uniprot_accession": "P77656", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bacteriophage-t4-gp38-tail-fibre-assembly-ipr003458.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bacteriophage-t4-gp38-tail-fibre-assembly-ipr003458.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/caudo-tap-pf02413.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02413", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/caudo-tap-pf02413.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P77699", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02413" ], "protein_name": "Protein TfaD", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e8d8d7ab920cdf336178dcd26b8309ace98ebcbf746940f2c4b09af76a2f0173", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNAMGSDYIREVNVVKSARVGYSKMLLGVYAYFIEHKQRNTLIPAGFVAVFNSDESSWHLVEDHRGKTVYDVASGDALFISELGPLPENVTWLSPEGEFQKWNGTAWVKDAEAEKLFRIREAEETKNSLMQVASEHIAPLQDAVDLEIATEEETSLLEAWKKYRVLLNRVDTSTAPDIEWPTNPVRE", "sequence_length": 187, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e8d8d7ab920cdf336178dcd26b8309ace98ebcbf746940f2c4b09af76a2f0173", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P77699.json", "taxon_id": "83333", "uniprot_accession": "P77699", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage Mu", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/caudo-tap-pf02413.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02413", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/caudo-tap-pf02413.yaml" } ], "pfam_ids": [ "PF02413" ], "protein_name": "Tail fiber assembly protein U", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMHLKNIKSENPKTKEQYQLTKNFDVIWLWSEDGKNWYEEVNNFQDDTIKIVYDENNIIVAITKDASTLNPEGFSVVEIPDITANRRADDSGKWMFKDGAVVKRIYTADEQQQQAESQKAALLSEAESVIQPLERAVRLNMATDEERARLESWERYSVLVSRVDTANPEWPQKPE", "sequence_length": 175, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "34c51fc18603e2959518fd494da1f7743dba05c52bc1a46235ccd3695830f263", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9T1U9.json", "taxon_id": "2681603", "uniprot_accession": "Q9T1U9", "uniprot_release": "2026_03" } ], "pfam_id": "PF02413", "short_name": "Caudo_TAP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chlampmp-m-pf07548.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07548", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chlampmp-m-pf07548.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/chlam-pmp-pf02415.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02415", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/chlam-pmp-pf02415.yaml" } ], "pfam_ids": [ "PF02415", "PF03797", "PF07548" ], "protein_name": "Probable outer membrane protein PmpB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSMKWLSATAVFAAVLPSVSGFCFPEPKELNFSRVGTSSSTTFTETVGEAGAEYIVSGNASFTKFTNIPTTDTTTPTNSNSSSSNGETASVSEDSDSTTTTPDPKGGGAFYNAHSGVLSFMTRSGTEGSLTLSEIKITGEGGAIFSQGELLFTDLTGLTIQNNLSQLSGGAIFGESTISLSGITKATFSSNSAEVPAPVKKPTEPKAQTASETSGSSSSSGNDSVSSPSSSRAEPAAANLQSHFICATATPAAQTDTETSTPSHKPGSGGAIYAKGDLTIADSQEVLFSINKATKDGGAIFAEKDVSFENITSLKVQTNGAEEKGGAIYAKGDLSIQSSKQSLFNSNYSKQGGGALYVEGDINFQDLEEIRIKYNKAGTFETKKITLPKAQASAGNADAWASSSPQSGSGATTVSNSGDSSSGSDSDTSETVPATAKGGGLYTDKNLSITNITGIIEIANNKATDVGGGAYVKGTLTCENSHRLQFLKNSSDKQGGGIYGEDNITLSNLTGKTLFQENTAKEEGGGLFIKGTDKALTMTGLDSFCLINNTSEKHGGGAFVTKEISQTYTSDVETIPGITPVHGETVITGNKSTGGNGGGVCTKRLALSNLQSISISGNSAAENGGGAHTCPDSFPTADTAEQPAAASAATSTPESAPVVSTALSTPSSSTVSSLTLLAASSQASPATSNKETQDPNADTDLLIDYVVDTTISKNTAKKGGGIYAKKAKMSRIDQLNISENSATEIGGGICCKESLELDALVSLSVTENLVGKEGGGLHAKTVNISNLKSGFSFSNNKANSSSTGVATTASAPAAAAASLQAAAAAVPSSPATPTYSGVVGGAIYGEKVTFSQCSGTCQFSGNQAIDNNPSQSSLNVQGGAIYAKTSLSIGSSDAGTSYIFSGNSVSTGKSQTTGQIAGGAIYSPTVTLNCPATFSNNTASMATPKTSSEDGSSGNSIKDTIGGAIAGTAITLSGVSRFSGNTADLGAAIGTLANANTPSATSGSQNSITEKITLENGSFIFERNQANKRGAIYSPSVSIKGNNITFNQNTSTHDGSAIYFTKDATIESLGSVLFTGNNVTATQASSATSGQNTNTANYGAAIFGDPGTTQSSQTDAILTLLASSGNITFSNNSLQNNQGDTPASKFCSIAGYVKLSLQAAKGKTISFFDCVHTSTKKIGSTQNVYETLDINKEENSNPYTGTIVFSSELHENKSYIPQNAILHNGTLVLKEKTELHVVSFEQKEGSKLIMKPGAVLSNQNIANGALVINGLTIDLSSMGTPQAGEIFSPPELRIVATTSSASGGSGVSSSIPTNPKRISAAAPSGSAATTPTMSENKVFLTGDLTLIDPNGNFYQNPMLGSDLDVPLIKLPTNTSDVQVYDLTLSGDLFPQKGYMGTWTLDSNPQTGKLQARWTFDTYRRWVYIPRDNHFYANSILGSQNSMIVVKQGLINNMLNNARFDDIAYNNFWVSGVGTFLAQQGTPLSEEFSYYSRGTSVAIDAKPRQDFILGAAFSKMVGKTKAIKKMHNYFHKGSEYSYQASVYGGKFLYFLLNKQHGWALPFLIQGVVSYGHIKHDTTTLYPSIHERNKGDWEDLGWLADLRISMDLKEPSKDSSKRITVYGELEYSSIRQKQFTEIDYDPRHFDDCAYRNLSLPVGCAVEGAIMNCNILMYNKLALAYMPSIYRNNPVCKYRVLSSNEAGQVICGVPTRTSARAEYSTQLYLGPFWTLYGNYTIDVGMYTLSQMTSCGARMIF", "sequence_length": 1754, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "93f5c0bd13d449524bedf68e6b131b374e654550f2760fd48f20ee2ad5b8ab10", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O84418.json", "taxon_id": "272561", "uniprot_accession": "O84418", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chlampmp-m-pf07548.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07548", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chlampmp-m-pf07548.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/chlam-pmp-pf02415.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02415", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/chlam-pmp-pf02415.yaml" } ], "pfam_ids": [ "PF02415", "PF03797", "PF07548" ], "protein_name": "Probable outer membrane protein PmpF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIKRTSLSFACLSFFYLSTISILQANETDTLQFRRFTFSDREIQFVLDPASLITAQNIVLSNLQSNGTGACTISGNTQTQIFSNSVNTTADSGGAFDMVTTSFTASDNANLLFCNNYCTHNKGGGAIRSGGPIRFLNNQDVLFYNNISAGAKYVGTGDHNEKNRGGALYATTITLTGNRTLAFINNMSGDCGGAISADTQISITDTVKGILFENNHTLNHIPYTQAENMARGGAICSRRDLCSISNNSGPIVFNYNQGGKGGAISATRCVIDNNKERIIFSNNSSLGWSQSSSASNGGAIQTTQGFTLRNNKGSIYFDSNTATHAGGAINCGYIDIRDNGPVYFLNNSAAWGAAFNLSKPRSATNYIHTGTGDIVFNNNVVFTLDGNLLGKRKLFHINNNEITPYTLSLGAKKDTRIYFYDLFQWERVKENTSNNPPSPTSRNTITVNPETEFSGAVVFSYNQMSSDIRTLMGKEHNYIKEAPTTLKFGTLAIEDDAELEIFNIPFTQNPTSLLALGSGATLTVGKHGKLNITNLGVILPIILKEGKSPPCIRVNPQDMTQNTGTGQTPSSTSSISTPMIIFNGRLSIVDENYESVYDSMDLSRGKAEQLILSIETTNDGQLDSNWQSSLNTSLLSPPHYGYQGLWTPNWITTTYTITLNNNSSAPTSATSIAEQKKTSETFTPSNTTTASIPNIKASAGSGSGSASNSGEVTITKHTLVVNWAPVGYIVDPIRRGDLIANSLVHSGRNMTMGLRSLLPDNSWFALQGAATTLFTKQQKRLSYHGYSSASKGYTVSSQASGAHGHKFLLSFSQSSDKMKEKETNNRLSSRYYLSALCFEHPMFDRIALIGAAACNYGTHNMRSFYGTKKSSKGKFHSTTLGASLRCELRDSMPLRSIMLTPFAQALFSRTEPASIRESGDLARLFTLEQAHTAVVSPIGIKGAYSSDTWPTLSWEMELAYQPTLYWKRPLLNTLLIQNNGSWVTTNTPLAKHSFYGRGSHSLKFSHLKLFANYQAEVATSTVSHYINAGGALVF", "sequence_length": 1034, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "08be44cc674eb4cca8722d53a505956ab95c70ba3d330b037bae3eeb3ab22b9f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P38008.json", "taxon_id": "272561", "uniprot_accession": "P38008", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/autotransporter-pf03797.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03797", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/autotransporter-pf03797.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/ac-1-pf18883.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/ac-1-pf18883.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/chlam-pmp-pf02415.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF02415", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/chlam-pmp-pf02415.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/patr-pf12951.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/patr-pf12951.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P45508", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02415", "PF03797", "PF12951", "PF18883" ], "protein_name": "Probable autotransporter YfaL", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b503358bca8b1ae0aca61f064b5e1c6259654af066f400cf02e20ff880c3aa3e", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW", "sequence_length": 1250, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b503358bca8b1ae0aca61f064b5e1c6259654af066f400cf02e20ff880c3aa3e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P45508.json", "taxon_id": "83333", "uniprot_accession": "P45508", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chlampmp-m-pf07548.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07548", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chlampmp-m-pf07548.yaml" } ], "pfam_ids": [ "PF02415", "PF07548" ], "protein_name": "Probable outer membrane protein pmp13", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTSIRKFLISTTLAPCFASTAFTVEVIMPSENFDGSSGKIFPYTTLSDPRGTLCIFSGDLYIANLDNAISRTSSSCFSNRAGALQILGKGGVFSFLNIRSSADGAAISSVITQNPELCPLSFSGFSQMIFDNCESLTSDTSASNVIPHASAIYATTPMLFTNNDSILFQYNRSAGFGAAIRGTSITIENTKKSLLFNGNGSISNGGALTGSAAINLINNSAPVIFSTNATGIYGGAIYLTGGSMLTSGNLSGVLFVNNSSRSGGAIYANGNVTFSNNSDLTFQNNTASPQNSLPAPTPPPTPPAVTPLLGYGGAIFCTPPATPPPTGVSLTISGENSVTFLENIASEQGGALYGKKISIDSNKSTIFLGNTAGKGGAIAIPESGELSLSANQGDILFNKNLSITSGTPTRNSIHFGKDAKFATLGATQGYTLYFYDPITSDDLSAASAAATVVVNPKASADGAYSGTIVFSGETLTATEAATPANATSTLNQKLELEGGTLALRNGATLNVHNFTQDEKSVVIMDAGTTLATTNGANNTDGAITLNKLVINLDSLDGTKAAVVNVQSTNGALTISGTLGLVKNSQDCCDNHGMFNKDLQQVPILELKATSNTVTTTDFSLGTNGYQQSPYGYQGTWEFTIDTTTHTVTGNWKKTGYLPHPERLAPLIPNSLWANVIDLRAVSQASAADGEDVPGKQLSITGITNFFHANHTGDARSYRHMGGGYLINTYTRITPDAALSLGFGQLFTKSKDYLVGHGHSNVYFATVYSNITKSLFGSSRFFSGGTSRVTYSRSNEKVKTSYTKLPKGRCSWSNNCWLGELEGNLPITLSSRILNLKQIIPFVKAEVAYATHGGIQENTPEGRIFGHGHLLNVAVPVGVRFGKNSHNRPDFYTIIVAYAPDVYRHNPDCDTTLPINGATWTSIGNNLTRSTLLVQASSHTSVNDVLEIFGHCGCDIRRTSRQYTLDIGSKLRF", "sequence_length": 973, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c1ebccca3510e1cebcb2d081743a3dcaff653a068830ff3b2db890c6eec2b669", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z896.json", "taxon_id": "83558", "uniprot_accession": "Q9Z896", "uniprot_release": "2026_03" } ], "pfam_id": "PF02415", "short_name": "Chlam_PMP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 10, "discovery_scanned": true, "example_count": 10, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Listeria monocytogenes serotype 1/2a (strain 10403S)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cdaa-n-pf19293.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19293", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cdaa-n-pf19293.yaml" } ], "pfam_ids": [ "PF02457", "PF19293" ], "protein_name": "Diadenylate cyclase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDFSNMSILHYLANIVDILVVWFVIYKVIMLIRGTKAVQLLKGIFIIIAVKLLSGFFGLQTVEWITDQMLTWGFLAIIIIFQPELRRALETLGRGNIFTRYGSRIEREQHHLIESIEKSTQYMAKRRIGALISVARDTGMDDYIETGIPLNAKISSQLLINIFIPNTPLHDGAVIIKGNEIASAASYLPLSDSPFLSKELGTRHRAALGISEVTDSITIVVSEETGGISLTKGGELFRDVSEEELHKILLKELVTVTAKKPSIFSKWKGGKSE", "sequence_length": 273, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "12c72fc7cdbfde290ae8c468f1ae115c6c3ab227f2a049bdd0754e4f0f3911ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0H3GM48.json", "taxon_id": "393133", "uniprot_accession": "A0A0H3GM48", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/disa-linker-pf10635.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10635", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/disa-linker-pf10635.yaml" } ], "pfam_ids": [ "PF02457", "PF10635" ], "protein_name": "DNA integrity scanning protein DisA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVKSGARSGRNVVHLARPTLRETLGRLAPGTPLRDGLERILRGRTGALIVLGYDDSVEAICDGGFVLDVRYAPTRLRELSKMDGAVVLSSDGSRILRANVQLVPDPSIPTDESGTRHRSAERTAIQTGYPVISVSHSMSIVTVYVAGERHVVPDSATILSRANQTIATLERYKGRLDEVSRQLSTAEIEDFVTLRDVMTVVQRLEMVRRISLEIDADVVELGTDGRQLKLQLDELVGDNETARELIVRDYHANPDPPTAAQVAATLEELDSLSDSELLDFTVLARVFGYPSTAEAQDSAMSSRGYRAMAAIPRLQFAHVDLLVRSFGSLQNLLAASADDLQSVDGIGSMWARHIREGLSLLAESTIADRLA", "sequence_length": 372, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "239287e6da2de2e591e29f3dbabc9003f38678c803454729edeb34e28491d954", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0R564.json", "taxon_id": "246196", "uniprot_accession": "A0R564", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dacz-n-pf19294.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19294", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dacz-n-pf19294.yaml" } ], "pfam_ids": [ "PF02457", "PF19294" ], "protein_name": "Diadenylate cyclase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAALSELLGDLVADVDGLFLFTPSSSHYEQFAETDVPTVVIAPENTVEAETFVELPLQFQNVKDRIRFGVEGAMEQSIVEAGDTIACNVGTFGGDPDSLVRVRVEENMRSGIYDLFANSRADPGVIRDVFEVAIELGKKGQKGEPVGALFIVGDAGKVMNKSRPLSYNPFEKSHVYVGDPIVNVMLKEFSRLDGAFVISDSGKIVSAYRYLEPSAEGVDIPKGLGARHMAGGAITRDTNATAIVLSESDGLVRAFKGGKMILEIDPEAY", "sequence_length": 269, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "239ac2d645bc5e74724348ccf0479675a7f0db402c86cebe346a4b7232c6aeec", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D4GZM5.json", "taxon_id": "309800", "uniprot_accession": "D4GZM5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus thuringiensis (strain BMB171)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cdas-n-pf10372.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cdas-n-pf10372.yaml" } ], "pfam_ids": [ "PF02457", "PF10372" ], "protein_name": "Diadenylate cyclase CdaS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHEWGLSEELKIQTKQMIEIAEKELSIMRNAIDKEDECILCKMEDIHHMLANVQTLAATYYIQAYLSPYTESSSFITTAIQHLSARKHGALIVVERNETLEALIQTGTTLNAHLTAPLLESIFYPGNPLHDGAVLVKNNHIVSAANILPLTKSTEVDPELGTRHRAAIGLSEKSDALILVVSEETGRTSFALNGILYTISL", "sequence_length": 201, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "68694326883723fad20f1eeab0203456f18d7d04d7992f7abdade72ceb2dd33e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D5TM67.json", "taxon_id": "714359", "uniprot_accession": "D5TM67", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/diadenylate-cyclase-activity-go0106408.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0106408", "section": 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"MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISMEDSQKELEHMVRKILNLRVFEDESGKHWSKSVMDKEYEVLCVSQFTLQCVLKGNKPDFHLAMPTEQAESFYNSFLEQLRKSYRPELIRDGKFGAYMQVHIQNDGPVTIELESPAPGAASSDPKQLSKLEKQQQRKEKTRAKGPSESSKERNAPRKEDRSASSGAEGDVSSEREP", "sequence_length": 209, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6abbb01bdd6b53f6e6436aec8588dbdcbe40ca759bdb5dbec192a27fa86cac03", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DD18.json", "taxon_id": "10090", "uniprot_accession": "Q9DD18", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/d-aminoacyl-trna-deacylase-tigr00256.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00256", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/d-aminoacyl-trna-deacylase-tigr00256.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/d-tyrosyl-trnatyr-deacylases-a-class-of-trna-dependent-hydrolases-whic-cd00563.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd00563", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/d-tyrosyl-trnatyr-deacylases-a-class-of-trna-dependent-hydrolases-whic-cd00563.yaml" } ], "pfam_ids": [ "PF02580" ], "protein_name": "D-aminoacyl-tRNA deacylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRAVIQRVKAAKVTVLDELVSSIGPGLCVLVGIKASDTAKDVEYLVRKILALRLFEEEGKRWQKSVKDLNLELLCVSQFTLYHRLKGNKPDFLAAMKGEEAQELYNQFLDRLGQSYDSTKIKDGKFGAYMQVHIENDGPVTINLESPEQKDTDREVDK", "sequence_length": 158, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "476a27597fc984749f96cf73afe08fdfc09e2814f4811fca986952a46584b773", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VGP0.json", "taxon_id": "7227", "uniprot_accession": "Q9VGP0", "uniprot_release": "2026_03" } ], "pfam_id": "PF02580", "short_name": "Tyr_Deacylase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf155-ipr003734.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003734", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf155-ipr003734.yaml" } ], "pfam_ids": [ "PF02582" ], "protein_name": "Sporulation protein RMD8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSYKANQPSPGEMPKRSPSILVTDARTSKNRMSAPFAGHAAGSRKNMENAGVTKSQGVRSSAIGPSPLQSFTHPRRRSSGRFSDISIDNILSDNSDIPSARREERLSSSSSDRPRQYERLSSRRKMINPLPPRTSKTSQKLVLIPEDDNLNHFQTLPTNALDRQRPKVGSMKSNSFDRLPRYSKEKSMARITAYNVADGFNLNQLYKFLQETHEVSPRLYDECLYVAYTLPLLPGKGGFRIKSNLSKKTMGGKTLIDNLIDTSEQRDHHYEYYSGVETVEDANNNYELETSGNNNNANQDTTTVPDHLPNPVGQQDSFNPMEPQFFAEETPLEIEKRERTERINMLKKEENDSDASCGNDNNNKNNDKSKLYAVEGNDQYVQSSRSPASPSSISTPSPPSSSQNDFDRVYKMHRDNDHEGNDRHAEIFIFHYGVIVFWNFTEIQEKNILGDITFADYKNLMIRPLDEQDIETEQFHFEYDRDTERPRIFNDIVTLRSGDHIIELTLSHAIAQSSKLSRFESRISPILISVTKLPKRLALYGTLGLKREQLLKKSGKLFKLRVDVNLSSTILDTPEFFWSFEPSLHPLYVAMREYLEIDQRVQVLNDRCKVFLEFFDICVDSVAERNMARVTWWFILVILFGVIFSLTEIFVRYVIIHRHTST", "sequence_length": 662, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7c6d64bbdf6aef64e856d96d5b0e8d2f3966f1dfd157c50aac83b152fd9e99d8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P43620.json", "taxon_id": "559292", "uniprot_accession": "P43620", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf155-ipr003734.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003734", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf155-ipr003734.yaml" } ], "pfam_ids": [ "PF02582" ], "protein_name": "Sporulation protein RMD1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVDSNDDQPERHALLHNDIQTSNNSRPSLVQKKYLPTPQDTRKSRASYTGSAMINPTSKQSRTGSGAQRTSRTAQKLKLLPEEPFQRDSERLTDLKNQEVYSQVNRIKDKPARRDAEKLGKAHRHLLPRSTAYCTASSYNMKELVRWLKDCRKLHHTHPKLFDECLYTPFIYNDWRGDKRFEDEDVIRLDDEGGEIIVSDKHPDLFIFEYGVVVMWGFTEREEKAFLNDIEKFEKEKLAEEDIQVEEFNYYVTKSYQPRIYNDFITLRDGSNYMVKLSISHAIAQSVKISLFEELVDNTIEDTQDIPQEIAYSGKVSMSKEDIMKSIGELFILRININLHGSVLDSPEIMWSEPQLEPIYQATRGYLEINQRVSLLNQRLEVISDLLQMLKEQLGHSHEEYLEFIVILLVGVEVLISVINIVVDMLASQH", "sequence_length": 430, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4789372f66bddfab3e136cf77d53999dde7574aa8be60b2bc027f51d7f5cd918", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q03441.json", "taxon_id": "559292", "uniprot_accession": "Q03441", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf155-ipr003734.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003734", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf155-ipr003734.yaml" } ], "pfam_ids": [ "PF02582" ], "protein_name": "MIOREX complex component 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSFRSLTSTFGFVSRFQIRRLGTSLSIQNLEVQDGRWKGKLATEKKTNREHKSVDTNIKTMKMLKNPKNSTRYLRRSFVPNHRKQENGRDILEDSLSKDHLKVKSCITITTGEGYDLKRCMKLLTMQGLQPTNLIPDEIVSFSYQDNGNKGDVMILGQNGSIVSWGFSESSVRNCIVPIVKAASLNPLNGEDFETEDMDYVEIEGEQDFDKLSSLDNKVTPRIACESFLSGDLIIINSLDSDQGMLDKAAFSSGLSRSTNLAVLEEAMEKHISKTRTITENISKGTKLNLRSSDALKSIGRLFLIRGKLNLYSELIETPDLYWSEPQLEEIFKNVSRYLDIGPRINILNSKLDYSTDECRALISLLNERNSTFLEWIIIYLIAFELCFEIYHFYQKYSSYCSEPTNDDLDATK", "sequence_length": 414, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dc05df3182c84d11c03d087c6f4ee3a8fb38b57993f103535e25194d499ee8d6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q05648.json", "taxon_id": "559292", "uniprot_accession": "Q05648", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf155-ipr003734.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003734", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf155-ipr003734.yaml" } ], "pfam_ids": [ "PF02582" ], "protein_name": "Required for meiotic nuclear division protein 1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPSRLLHTLASLHSISAKAHQCQRLTWLTLRPLRKSESTTCHNGLTIQQHLHSFFPSITADSLNKPEILEMSRITSDTSRLFPLNAVHWLDGKEHWPSMHPFGTHRSMTHKPNLLCSKWFIKAVKRHHSSVSNEALVPKQDLPQIKRPLKASRTRQPSRTNLPDLSVNEDLMQCTAFATADEYHLGSLSQELVSCGYVEVTSLPRDAANILVMGVESSAKEGDPGTIFLFREGAAVFWNVKEKTMKHVMQVLERHETQPYEVALVHWENEELNYIKTEGQSKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEATLDKFIESIQSIPEALKAGKKVKLSHKEVMQKMGELFALRHRINLSSDFLITPDFYWDRANLEELYDKTCQFLSITRRVKVMNEKLQHCMELTDLMRNHLNEKRALRLEWMIVILITIEVMFELGRVFF", "sequence_length": 450, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e5754448a58e1c2e870646e4985e07b3b97ca3c3a447e1a5cc5c0cf935f129a2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CI78.json", "taxon_id": "10090", "uniprot_accession": "Q8CI78", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf155-ipr003734.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003734", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf155-ipr003734.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf155-pf02582.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02582", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf155-pf02582.yaml" } ], "pfam_ids": [ "PF02582" ], "protein_name": "Protein RETARDED ROOT GROWTH, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKWRAVAALLLRNQLLNSSKRLNLSSSPCVSKHPTIGLASRFLNFRHFSAFPSPISIYNNDSDSGSNDAYQNYEFGTEAEEALGKIPIKAYFLSTSIDLKAMQAENLCNVVPPTSRSTNYIALKFSDFTPSGIYSLDERESVSNCKFMVVFQYGSAILFNVDDNDVDRYLDIVRRHASGLLTEMRKDDYAVKEKPLLIEEMKGGPDYIVLKTLDTNSIRIIGSVLGQSIALDYSVSQVNKLVEEFADINRSMAKTGTFTMTRKKLFQLVGKANSNIADVILKVGLFERSEIAWREARYAQIYEYLREEYEISQRFGDLDYKLKFIEHNIHFLQEVMQNRQSDLLEWCIIFLLAIENAIGIYEIVRESAGASL", "sequence_length": 373, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8428a4e1ebf589764db1b2c16249dff308082c4311585040c90eefff5d481cb9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9C565.json", "taxon_id": "3702", "uniprot_accession": "Q9C565", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf155-ipr003734.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003734", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf155-ipr003734.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf155-pf02582.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02582", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf155-pf02582.yaml" } ], "pfam_ids": [ "PF02582" ], "protein_name": "Protein RETARDED ROOT GROWTH-LIKE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMRSVDVYVKTLGPPVRSILYSIFTSQQKPSSLPSLPFHFSLRSSSNIPTRCFSNVVAKSNSPIYDFQGFRNLFTERAISSSTTTPVASAQPQQLQNQNQHPAEVDEEISMGLEDEAKLSIPVRAYFFSTSVDLRSLIEQNKQNFIPPTSRMTNYVVLKFGNHSDPTDTTRGRISGSESIYMVVFHYGSIVLFNVREHEVDEYLKVVERHASGLLPEMRKDEYEVRENPNLDTWMEVGRDFIRLQFLNTDGIRTIGCVLGQSIALDYYGRQVDGMVAEFTEINRQLEITGTFTMKRKKLFQLVGKANVILADVILKLGLFERSDIAWKDAKYGQIWEFLRDEFELTQSFANLDYKLKFVEHNVRFLQEILQNRKSATLEWLIIILISMEIAISFYNMSRASL", "sequence_length": 402, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d0b314153a2c6d3d6bd6812f9016e0c6b186ebec0f9cffa2a67735e96880cfed", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FNB2.json", "taxon_id": "3702", "uniprot_accession": "Q9FNB2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf155-ipr003734.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003734", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf155-ipr003734.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": 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"Q96FZ2", "uniprot_release": "2026_03" } ], "pfam_id": "PF02586", "short_name": "SRAP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml" } ], "pfam_ids": [ "PF02588" ], "protein_name": "UPF0750 membrane protein YitE", "registry_status": 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"cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O34792", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02588", "PF10035" ], "protein_name": "UPF0750 membrane protein YvjA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "20d4f1660b0e76163bcdd8093665d33f41bb5d11ec932bbfb9b6eafca7936227", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDVRNKTLWILRDYVYILIGAAITAVSFNVFLLPNKIAAGGVSGISTILQSYGFEAAYVQWIINIPLFIAGVILLGGKFGLKTLAGSVFLPLVVFLTRDIQPATHHELLAAIFGGVGIGIGIGIVYLGKGSTGGTALAAQIIHKYSGLSLGKCLAIIDGMIVVTAMIVFNIEQGLYAMLGVYVSSKTIDVVQVGFNRSKMALIITKQEQAVKEAVLQKIDRGVTKISAVGGYTDDDRPILMCVVGQTEFTKLKQIVKQIDESAFVIVADASEVLGEGFKRA", "sequence_length": 281, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "20d4f1660b0e76163bcdd8093665d33f41bb5d11ec932bbfb9b6eafca7936227", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34792.json", "taxon_id": "224308", "uniprot_accession": "O34792", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2179-ipr019264.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2179-pf10035.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10035", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2179-pf10035.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml" } ], "pfam_ids": [ "PF02588", "PF10035" ], "protein_name": "UPF0750 membrane protein YitT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLDQTKKLLIVIIGALLNAAGLNLFLIPADVYASGFTGVAQLLSSVVDQYAPFYISTGTLLFLLNIPVGILGWLKVGKSFTVYSILSVALTTLFMGILPETSLSHDILLNAVFGGVISAVGIGLTLKYGASTGGLDIVAMVLAKWKDKPVGTYFFILNGIIILTAGLLQGWEKALYTLVTLYVTTRVIDAIHTRHMKLTAMIVTKKADEIKEAIYGKMVRGITTVPAKGAFTNEQKEMMIIVITRYELYDLEKIVKEVDPKAFTNIVQTTGIFGFFRKD", "sequence_length": 280, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "73eb7791df99f60210a4c3604ff53f31dfca612f7668dd4e93750cc10db53cf5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P39803.json", "taxon_id": "224308", "uniprot_accession": "P39803", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-terminal-domain-of-bacillus-subtilis-yitt-and-similar-protein-domain-cd16380.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd16380", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-terminal-domain-of-bacillus-subtilis-yitt-and-similar-protein-domain-cd16380.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2179-ipr019264.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2179-ipr019264.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml" } ], "pfam_ids": [ "PF02588", "PF10035" ], "protein_name": "UPF0750 membrane protein YpjC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLGEIRLKNIFFILIGAAIFSFGLVHFNMQNNLAEGGFTGITLLLYALFHISPSISNLVLNIPIFFIGWRLLGRTMFVYTLVGTVALSLFLSIFQRYEIHMPLQHDLALAALFAGVFIGAGLGIIFKFGGTTGGVDIIARLVNKYFGIPMGRTMFAFDACVIILSLLTYLSYKEAMYTLVAVFVAARLIDFIQEGGYAAKGATIISSKNDLIQKKILEEMERGVTILKGQGSYTKEDIDVLYCVVPKNELVMLKSVINSIDPHAFVAVSDVHDVLGEGFTLDENKNPLPR", "sequence_length": 290, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5ba97ecc2bf948e1582b3720791bec74b0ed3ba31fb7157eca5713cd12fef292", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P42978.json", "taxon_id": "224308", "uniprot_accession": "P42978", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-terminal-domain-of-bacillus-subtilis-yitt-and-similar-protein-domain-cd16380.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd16380", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-terminal-domain-of-bacillus-subtilis-yitt-and-similar-protein-domain-cd16380.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2179-ipr019264.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2179-ipr019264.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml" } ], "pfam_ids": [ "PF02588", "PF10035" ], "protein_name": "UPF0750 membrane protein YqfU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTPTKQHKKETFTHFIFRVFMILVGAASAAVSIELFLIPNDFIDGGIIGVSLILDHLFMSNPFLNFAFFVVILNIPFMIFGYKYIGKTFLVSTFIGIVGLAVIESSLHHVEAITTQPILATVFGGLLLGFGVGLVIRNGGSMDGTEILGILLTKKLPFSVGEFVMFINVFIFIWAVFVFGPEQAMYSFMTYYIAMKTIDAVIQGLDETKAVIIVSEQYDEISDAILHRLGRGTTKLKGKGGYTDEEKDVIYAVVTRLEVTKLKSIVFEVDQNAFITIMNTHETRGGKFKNAIH", "sequence_length": 293, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "010b836bf1347ac0f82644ffae6600a7c2a04b237399fc89819d7656b86809f9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P54478.json", "taxon_id": "224308", "uniprot_accession": "P54478", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-terminal-domain-of-bacillus-subtilis-yitt-and-similar-protein-domain-cd16380.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd16380", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-terminal-domain-of-bacillus-subtilis-yitt-and-similar-protein-domain-cd16380.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2179-ipr019264.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019264", "section": "canonical_examples", "url": 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"9fa8f251b19b4a9fc4b25dd30b2c4cd943381e96bc87d960ef322a8ae9764c3a", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEEYQVKIDTFEGPLDLLLHLINRLEIDIYDIPVAKITEQYLLYVHTMRVLELDIASEYLVMAATLLSIKSRMLLPKQEEELFEDELLEEEDPREELIEKLIEYRKYKDAAKDLKEREEERQKSFTKPPSDLSEYAKEVKQSEQKLSVTVYDMIGAFQKVLKRKKINRPMETTITRQDIPIEARMNEIVHSLKSRGTRINFMDLFPYEQKEHLVVTFLAVLELMKNQLVLIEQEHNFSDIYITGSESIHGA", "sequence_length": 251, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "9fa8f251b19b4a9fc4b25dd30b2c4cd943381e96bc87d960ef322a8ae9764c3a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P35154.json", "taxon_id": "224308", "uniprot_accession": "P35154", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/smc-scpa-pf02616.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02616", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/smc-scpa-pf02616.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/6-10-250-2410-6-10-250-2410.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.10.250.2410", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-10-250-2410-6-10-250-2410.yaml" } ], "pfam_ids": [ "PF02616" ], "protein_name": "Uncharacterized protein MJ1134", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIDSNFDIVLWVRMIKEGIEKKNLNPWDVNIAEIADYYIQKIKELKKFDIRLSADVILVAGILLRMKSEALYDECKVEEEEDYDYCDDYYDYDDIEEKPKKGKKKEKEDKDKNKKSKKPVTVDELIKTIEKELNKVKKSRKNREKKTNEVEEIIEELIEEDDISDIIAELLDDLMKEGIIVYQEKFKTREDRVRYFIPSLYLANDGKAELIQEKLFGELIIKLKSF", "sequence_length": 226, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1da5d60cb7a66821ce04194e99d05824591f0155d132dc71712a9a67c6607084", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58534.json", "taxon_id": "243232", "uniprot_accession": "Q58534", "uniprot_release": "2026_03" } ], "pfam_id": "PF02616", "short_name": "SMC_ScpA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/atp-dependent-clp-protease-adapter-clps-nf000670.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF000670", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/atp-dependent-clp-protease-adapter-clps-nf000670.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/atp-dependent-clp-protease-adapter-clps-nf000672.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF000672", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/atp-dependent-clp-protease-adapter-clps-nf000672.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/adaptor-protein-clps-core-ipr003769.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003769", "section": "canonical_examples", "url": 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"ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/ribosomal-protein-l7-l12-c-terminal-domain-adaptor-protein-clps-3-30-1390-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.1390.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ribosomal-protein-l7-l12-c-terminal-domain-adaptor-protein-clps-3-30-1390-10.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0A8Q6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02617" ], "protein_name": "ATP-dependent Clp protease adapter protein ClpS", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d041d101f31fa036c48d50b94ad715be6206a7eeb96b9f8e78115557aba0a65f", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA", "sequence_length": 106, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d041d101f31fa036c48d50b94ad715be6206a7eeb96b9f8e78115557aba0a65f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A8Q6.json", "taxon_id": "83333", "uniprot_accession": "P0A8Q6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/ring-finger-h2-subclass-found-in-ubiquitin-protein-ligase-e3-alpha-1-u-cd16482.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd16482", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/ring-finger-h2-subclass-found-in-ubiquitin-protein-ligase-e3-alpha-1-u-cd16482.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/ubr-box-found-in-ubiquitin-protein-ligases-e3-alpha-1-ubr1-e3-alpha-2--cd19672.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd19672", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/ubr-box-found-in-ubiquitin-protein-ligases-e3-alpha-1-ubr1-e3-alpha-2--cd19672.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/adaptor-protein-clps-core-ipr003769.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/adaptor-protein-clps-core-ipr003769.yaml" } ], "pfam_ids": [ "PF02207", "PF02617", "PF18995", "PF22960", "PF30856" ], "protein_name": "E3 ubiquitin-protein ligase ubr-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIVDLIQSARQGEWAQVRQLLLKHWLVQVPEVFEVNSDLPWDNTAANERILGSQGEILLAPLVSAFVLDVRNTKSTLEAMNGIAGVDPARRGQICGHVFKNGELTYTCLDCATDGTCVMCLQCFEVSIHKSHKYKMHSSSGSGYCDCGDADAWTEGYACANHEKKDDEEAAVLAPELKKRCEQLVEIILQFSLSMITHKDDLKLPEIFEKMKPEVTNEAQQYLTVLYNDETHTYESVIKVLELYIHCTKDQAMLVATIVDREGRSAVKLGSKADCTKAKDDVQRKTARDPTSIRRSSNHNLPLSVKVMDTTLFALQNFSISLLTWLNTQMDVFPPLREIVGEILLSSKFALKKNYTRKMKSEDQRLVAGIIRNVMVLPDDEEEELFALDGRMDVDEMDDDDIGGEALQMEIDADDEEEITAALAGVSEHQESPGPSRDSSTFTMLENILLQDTQMWKAGRSILHQMLMRTVFMIYDQKVRFAKAFMLHYNEIYEDFIKDDHEMDVSVVGLSVQFMTVPSLARKLVAEDQAFSVISKAIRDQTDKFVKYYNDGKIARFDFTSRSFPPELRRSLHITRDMAYILNAVPSESDWNRELIDGFVQGFADFLLFLQHLQGMDEVKRQAVEHQVWESEWETAFNILLRLKDAISMIIGWAETNEEVHNRLMIMCLELMNRMPPVYTKSEEDTYELTVTINGESCRISHFDVLKSSTSVHQPVVRIIAGLFSASNYTGFLLNRSNNSHTSLNQERIKELINCKDETNLYELSLRVLVLCAQSNATLWRRNGFSLINQIHNYFSPLCRNEMFDRDVLMMQVGAALTPSTKFIFHLLHRFRLFKWATSEFEQDKANEKPAKPESEDLSKTLVMIAEEFIQCLILILCERYTYGVGKTRPMDQMKREVIHILCTGSHTFSHIQQKMSHDINSKRLSLHEAVNLVADFRKPLATTAGQFHCKESSLPTYSPFFMHYSKSDQSAAEQSQARVRAKMEKSVRACAPPILPDFQTFFERIPEILTTNVLIHVVRLIIDRTARRSRFSSDRLFHKTLYLIGIALNEEEKNPSFGFTQRAEESIGLLSLLEGLVGKPESSICPILLEVTVEKYRKLIKARAGVPEAAPAPENKPAQSEEEIKAKRAARAAEMRQKAMAKMSNMQSKFMKKIEDEEKKDESQTPSEKSETVVKKDDYDNKHFFDEDVVKQVGHDFPVCIGANKWHAELVKPRTLTCILCQEDEIIAPQQGKPMVCAAFIQQSQLFTHKNKNGELMTASSGTISTRDLLTAPATLQYGVDVSTCSHSMHYECYRSLAEANRSRESLRARQVGQHSHKMVDTENGEYQCPLCKRLSNAAIPVLPAYQLTNQNGFSTVSGAGKENFDTWVARVKRNLEMPLSSESVSKKGHSRKRSHSERSLLDLEKLSKDPDTANTSAGVLQFGAMEMSSATHMPASAESQMLMTTSPSQDDVEFYNELAAMFVDQDVNNTTSPAATPETIPAIGSSSRIPESQESGKKPLSSQIQHVLYSLIRPFPALINSNRICSSSFEGFEEPIKDLGKNMMKFRKRGNELKTNFIEKHLKGYVISTVTWQSTAHVARAISSYLHYDKKPLFGALNTRQRDCLSAMARLCASLSHNMQFLLHAVSDMLRVFLCEPPRPKLAQTPGSPLLSAPSTSSFTPAPAQIPHSGTNFAFLVQLFNPAGPRKNVNLNILQIDILSLAISLMMTIGWTWNNGTQSMNSSSTHQKARLLTPDGSVDEAYVLRLSLLAHYFQIIATHSEADGNDVNMEEEQESQMEVDPVAAQTIRKLYALCHPFDGPLRRVDILWRKMEEGAQSLLRPIALLYHFITLVDPPEALKDPSINSSEPLFRYLGLPHKIEEQISGSMLEKLFTMWSSSIPSDQALRQDLVVQPVRPNLLVELPEKYSQLINQVATFKCPTIPIEESTSNVPTLCLVCGTILCSQAYCCQKIINKQSYGACRYHMSQCSGSVGMFLRVRDCSLVLMTTRKRGCFRPAPYVDEFGEVDQGFRRGNPLHLNPELYQKLKSLWLQQGITEEVVNYNEIDFRNVQYDWGHF", "sequence_length": 2058, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b7691eb40dd9df9e71418bceb641734752d8759871290d068a4fc0850da0a36b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P91133.json", "taxon_id": "6239", "uniprot_accession": "P91133", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/clps-pf02617.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02617", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/clps-pf02617.yaml" } ], "pfam_ids": [ "PF02207", "PF02617", "PF18995", "PF22960", "PF30856" ], "protein_name": "E3 ubiquitin-protein ligase UBR2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASEMEPEVQAIDRSLLECSAEEIAGRWLQATDLNREVYQHLAHCVPKIYCRGPNPFPQKEDTLAQHILLGPMEWYICAEDPALGFPKLEQANKPSHLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHKLSSSEVVEEEDPLVHLSEDVIARTYNIFAIMFRYAVDILTWEKESELPEDLEVAEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYCDQAKTVIVRNTSRQTKPLKVQVMHSSVAAHQNFGLKALSWLGSVIGYSDGLRRILCQVGLQEGPDGENSSLVDRLMLNDSKLWKGARSVYHQLFMSSLLMDLKYKKLFALRFAKNYRQLQRDFMEDDHERAVSVTALSVQFFTAPTLARMLLTEENLMTVIIKAFMDHLKHRDAQGRFQFERYTALQAFKFRRVQSLILDLKYVLISKPTEWSDELRQKFLQGFDAFLELLKCMQGMDPITRQVGQHIEMEPEWEAAFTLQMKLTHVISMVQDWCALDEKVLIEAYKKCLAVLTQCHGGFTDGEQPITLSICGHSVETIRYCVSQEKVSIHLPISRLLAGLHVLLSKSEVAYKFPELLPLSELSPPMLIEHPLRCLVLCAQVHAGMWRRNGFSLVNQIYYYHNVKCRREMFDKDIVMLQTGVSMMDPNHFLMIMLSRFELYQLFSTPDYGKRFSSEVTHKDVVQQNNTLIEEMLYLIIMLVGERFNPGVGQVAATDEIKREIIHQLSIKPMAHSELVKSLPEDENKETGMESVIESVAHFKKPGLTGRGMYELKPECAKEFNLYFYHFSRAEQSKAEEAQRKLKRENKEDTALPPPALPPFCPLFASLVNILQCDVMLYIMGTILQWAVEHHGSAWSESMLQRVLHLIGMALQEEKHHLENAVEGHVQTFTFTQKISKPGDAPHNSPSILAMLETLQNAPSLEAHKDMIRWLLKMFNAIKKIRECSSSSPVAEAEGTIMEESSRDKDKAERKRKAEIARLRREKIMAQMSEMQRHFIDENKELFQQTLELDTSASATLDSSPPVSDAALTALGPAQTQVPEPRQFVTCILCQEEQEVTVGSRAMVLAAFVQRSTVLSKDRTKTIADPEKYDPLFMHPDLSCGTHTGSCGHVMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYDVENGEFLCPLCECLSNTVIPLLLPPRSILSRRLNFSDQPDLAQWTRAVTQQIKVVQMLRRKHNAADTSSSEDTEAMNIIPIPEGFRPDFYPRNPYSDSIKEMLTTFGTAAYKVGLKVHPNEGDPRVPILCWGTCAYTIQSIERILSDEEKPVFGPLPCRLDDCLRSLTRFAAAHWTVALLPVVQGHFCKLFASLVPSDSYEDLPCILDIDMFHLLVGLVLAFPALQCQDFSGSSLATGDLHIFHLVTMAHIVQILLTSCTEENGMDQENPTGEEELAILSLHKTLHQYTGSALKEAPSGWHLWRSVRAAIMPFLKCSALFFHYLNGVPAPPDLQVSGTSHFEHLCNYLSLPTNLIHLFQENSDIMNSLIESWCQNSEVKRYLNGERGAISYPRGANKLIDLPEDYSSLINQASNFSCPKSGGDKSRAPTLCLVCGSLLCSQSYCCQAELEGEDVGACTAHTYSCGSGAGIFLRVRECQVLFLAGKTKGCFYSPPYLDDYGETDQGLRRGNPLHLCQERFRKIQKLWQQHSITEEIGHAQEANQTLVGIDWQHL", "sequence_length": 1755, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f00d0ce3d9dfba249d67f16dadd630162041ff0added3b2db6fe453b3be485ad", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6WKZ8.json", "taxon_id": "10090", "uniprot_accession": "Q6WKZ8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/clps-pf02617.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02617", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/clps-pf02617.yaml" } ], "pfam_ids": [ "PF02207", "PF02617", "PF18995", "PF22960", "PF30856" ], "protein_name": "E3 ubiquitin-protein ligase UBR1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADEEAGGTERMEISAELPQTPQRLASWWDQQVDFYTAFLHHLAQLVPEIYFAEMDPDLEKQEESVQMSIFTPLEWYLFGEDPDICLEKLKHSGAFQLCGRVFKSGETTYSCRDCAIDPTCVLCMDCFQDSVHKNHRYKMHTSTGGGFCDCGDTEAWKTGPFCVNHEPGRAGTIKENSRCPLNEEVIVQARKIFPSVIKYVVEMTIWEEEKELPPELQIREKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAYAACQEAKEDIKSHSENVSQHPLHVEVLHSEIMAHQKFALRLGSWMNKIMSYSSDFRQIFCQACLREEPDSENPCLISRLMLWDAKLYKGARKILHELIFSSFFMEMEYKKLFAMEFVKYYKQLQKEYISDDHDRSISITALSVQMFTVPTLARHLIEEQNVISVITETLLEVLPEYLDRNNKFNFQGYSQDKLGRVYAVICDLKYILISKPTIWTERLRMQFLEGFRSFLKILTCMQGMEEIRRQVGQHIEVDPDWEAAIAIQMQLKNILLMFQEWCACDEELLLVAYKECHKAVMRCSTSFISSSKTVVQSCGHSLETKSYRVSEDLVSIHLPLSRTLAGLHVRLSRLGAVSRLHEFVSFEDFQVEVLVEYPLRCLVLVAQVVAEMWRRNGLSLISQVFYYQDVKCREEMYDKDIIMLQIGASLMDPNKFLLLVLQRYELAEAFNKTISTKDQDLIKQYNTLIEEMLQVLIYIVGERYVPGVGNVTKEEVTMREIIHLLCIEPMPHSAIAKNLPENENNETGLENVINKVATFKKPGVSGHGVYELKDESLKDFNMYFYHYSKTQHSKAEHMQKKRRKQENKDEALPPPPPPEFCPAFSKVINLLNCDIMMYILRTVFERAIDTDSNLWTEGMLQMAFHILALGLLEEKQQLQKAPEEEVTFDFYHKASRLGSSAMNIQMLLEKLKGIPQLEGQKDMITWILQMFDTVKRLREKSCLIVATTSGSESIKNDEITHDKEKAERKRKAEAARLHRQKIMAQMSALQKNFIETHKLMYDNTSEMPGKEDSIMEEESTPAVSDYSRIALGPKRGPSVTEKEVLTCILCQEEQEVKIENNAMVLSACVQKSTALTQHRGKPIELSGEALDPLFMDPDLAYGTYTGSCGHVMHAVCWQKYFEAVQLSSQQRIHVDLFDLESGEYLCPLCKSLCNTVIPIIPLQPQKINSENADALAQLLTLARWIQTVLARISGYNIRHAKGENPIPIFFNQGMGDSTLEFHSILSFGVESSIKYSNSIKEMVILFATTIYRIGLKVPPDERDPRVPMLTWSTCAFTIQAIENLLGDEGKPLFGALQNRQHNGLKALMQFAVAQRITCPQVLIQKHLVRLLSVVLPNIKSEDTPCLLSIDLFHVLVGAVLAFPSLYWDDPVDLQPSSVSSSYNHLYLFHLITMAHMLQILLTVDTGLPLAQVQEDSEEAHSASSFFAEISQYTSGSIGCDIPGWYLWVSLKNGITPYLRCAALFFHYLLGVTPPEELHTNSAEGEYSALCSYLSLPTNLFLLFQEYWDTVRPLLQRWCADPALLNCLKQKNTVVRYPRKRNSLIELPDDYSCLLNQASHFRCPRSADDERKHPVLCLFCGAILCSQNICCQEIVNGEEVGACIFHALHCGAGVCIFLKIRECRVVLVEGKARGCAYPAPYLDEYGETDPGLKRGNPLHLSRERYRKLHLVWQQHCIIEEIARSQETNQMLFGFNWQLL", "sequence_length": 1749, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "09a77a1c0c1f1b9913770ef76772d09b115b942d35d2c1726979b39d17331813", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IWV7.json", "taxon_id": "9606", "uniprot_accession": "Q8IWV7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/clps-pf02617.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02617", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/clps-pf02617.yaml" } ], "pfam_ids": [ "PF02207", "PF02617", "PF18995", "PF22960", "PF30856" ], "protein_name": "E3 ubiquitin-protein ligase UBR2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASELEPEVQAIDRSLLECSAEEIAGKWLQATDLTREVYQHLAHYVPKIYCRGPNPFPQKEDMLAQHVLLGPMEWYLCGEDPAFGFPKLEQANKPSHLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHELNTSEIEEEEDPLVHLSEDVIARTYNIFAITFRYAVEILTWEKESELPADLEMVEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYCEQAKSVIVRNTSRQTKPLKVQVMHSSIVAHQNFGLKLLSWLGSIIGYSDGLRRILCQVGLQEGPDGENSSLVDRLMLSDSKLWKGARSVYHQLFMSSLLMDLKYKKLFAVRFAKNYQQLQRDFMEDDHERAVSVTALSVQFFTAPTLARMLITEENLMSIIIKTFMDHLRHRDAQGRFQFERYTALQAFKFRRVQSLILDLKYVLISKPTEWSDELRQKFLEGFDAFLELLKCMQGMDPITRQVGQHIEMEPEWEAAFTLQMKLTHVISMMQDWCASDEKVLIEAYKKCLAVLMQCHGGYTDGEQPITLSICGHSVETIRYCVSQEKVSIHLPVSRLLAGLHVLLSKSEVAYKFPELLPLSELSPPMLIEHPLRCLVLCAQVHAGMWRRNGFSLVNQIYYYHNVKCRREMFDKDVVMLQTGVSMMDPNHFLMIMLSRFELYQIFSTPDYGKRFSSEITHKDVVQQNNTLIEEMLYLIIMLVGERFSPGVGQVNATDEIKREIIHQLSIKPMAHSELVKSLPEDENKETGMESVIEAVAHFKKPGLTGRGMYELKPECAKEFNLYFYHFSRAEQSKAEEAQRKLKRQNREDTALPPPVLPPFCPLFASLVNILQSDVMLCIMGTILQWAVEHNGYAWSESMLQRVLHLIGMALQEEKQHLENVTEEHVVTFTFTQKISKPGEAPKNSPSILAMLETLQNAPYLEVHKDMIRWILKTFNAVKKMRESSPTSPVAETEGTIMEESSRDKDKAERKRKAEIARLRREKIMAQMSEMQRHFIDENKELFQQTLELDASTSAVLDHSPVASDMTLTALGPAQTQVPEQRQFVTCILCQEEQEVKVESRAMVLAAFVQRSTVLSKNRSKFIQDPEKYDPLFMHPDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYDVENGEFLCPLCECLSNTVIPLLLPPRNIFNNRLNFSDQPNLTQWIRTISQQIKALQFLRKEESTPNNASTKNSENVDELQLPEGFRPDFRPKIPYSESIKEMLTTFGTATYKVGLKVHPNEEDPRVPIMCWGSCAYTIQSIERILSDEDKPLFGPLPCRLDDCLRSLTRFAAAHWTVASVSVVQGHFCKLFASLVPNDSHEELPCILDIDMFHLLVGLVLAFPALQCQDFSGISLGTGDLHIFHLVTMAHIIQILLTSCTEENGMDQENPPCEEESAVLALYKTLHQYTGSALKEIPSGWHLWRSVRAGIMPFLKCSALFFHYLNGVPSPPDIQVPGTSHFEHLCSYLSLPNNLICLFQENSEIMNSLIESWCRNSEVKRYLEGERDAIRYPRESNKLINLPEDYSSLINQASNFSCPKSGGDKSRAPTLCLVCGSLLCSQSYCCQTELEGEDVGACTAHTYSCGSGVGIFLRVRECQVLFLAGKTKGCFYSPPYLDDYGETDQGLRRGNPLHLCKERFKKIQKLWHQHSVTEEIGHAQEANQTLVGIDWQHL", "sequence_length": 1755, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ca94dd0e5e867b54dd4e2cf867982bb2847612a5488987d8177c81508b2c9f4c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IWV8.json", "taxon_id": "9606", "uniprot_accession": "Q8IWV8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/adaptor-protein-clps-core-ipr003769.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/adaptor-protein-clps-core-ipr003769.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/ribosomal-protein-bl12-c-terminal-adaptor-protein-clps-like-ipr014719.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR014719", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/ribosomal-protein-bl12-c-terminal-adaptor-protein-clps-like-ipr014719.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/ribosomal-protein-l7-l12-c-terminal-domain-adaptor-protein-clps-3-30-1390-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.1390.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ribosomal-protein-l7-l12-c-terminal-domain-adaptor-protein-clps-3-30-1390-10.yaml" } ], "pfam_ids": [ "PF02617" ], "protein_name": "ATP-dependent Clp protease adapter protein CLPS1, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEAHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC", "sequence_length": 159, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "54434079fc8251284ddd90ed40a20579f31de6988360839b29f8440e734f6837", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SX29.json", "taxon_id": "3702", "uniprot_accession": "Q9SX29", "uniprot_release": "2026_03" } ], "pfam_id": "PF02617", "short_name": "ClpS", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/endolytic-transglycosylase-mltg-tigr00247.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00247", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/endolytic-transglycosylase-mltg-tigr00247.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/proteins-similar-to-escherichia-coli-yceg-mltg-may-function-as-endolyt-cd08010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd08010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/proteins-similar-to-escherichia-coli-yceg-mltg-may-function-as-endolyt-cd08010.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yceg-pf02618.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yceg-pf02618.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/endolytic-murein-transglycosylase-3-30-1490-480.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.1490.480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/endolytic-murein-transglycosylase-3-30-1490-480.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O34758", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02618" ], "protein_name": "Endolytic murein transglycosylase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "cd519e88b332040cf1922dc99224d9f8e4cc643ab35b7ecb2e519b5e4fe5171a", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MYINQQKKSFFNKKRIILSSIVVLFLIIGGAFLYGKSLLEPVEKDSKTTVNINIPSGSSVSAIASILKKNDVIKSEKAFQYYVKYKGASGFQAGFYHLNKGMDLDAIIQKLTSGATGYAFQITVTEGAQLTQIAAAIADETKYSKKQVIAKLDDETFINQLKKEFPDTVTNDVFNKNIKHPLEGYLFPATYPFNDPDTSLEDIIKAMIKQTNSYVETYKSEMKKNKVSVHKLLTMASLIEEEATEKADRHKIASVFYNRLKKKMPLQTDPTVLYAAGKHKDRVLYKDLEIDSPYNTYKNTGLTPGPIANAGMSSWEAALHPDKTDYLYFLAKSNGEVVFTKTLKEHNKAKEKYISSKNEK", "sequence_length": 360, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "cd519e88b332040cf1922dc99224d9f8e4cc643ab35b7ecb2e519b5e4fe5171a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34758.json", "taxon_id": "224308", "uniprot_accession": "O34758", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/cell-division-protein-yceg-nf007619.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007619", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/cell-division-protein-yceg-nf007619.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/endolytic-transglycosylase-mltg-tigr00247.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00247", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/endolytic-transglycosylase-mltg-tigr00247.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/proteins-similar-to-escherichia-coli-yceg-mltg-may-function-as-endolyt-cd08010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd08010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/proteins-similar-to-escherichia-coli-yceg-mltg-may-function-as-endolyt-cd08010.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yceg-pf02618.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yceg-pf02618.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P28306", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02618" ], "protein_name": "Endolytic murein transglycosylase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "67f21404a369d94322f16cd57ca0a1a9bd65e39fafb63f47991cef89739f5aea", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTLKPGTGRLALGEQLYADKIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLLESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKETAVASERDKVASVFINRLRIGMRLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ", "sequence_length": 340, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "67f21404a369d94322f16cd57ca0a1a9bd65e39fafb63f47991cef89739f5aea", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P28306.json", "taxon_id": "83333", "uniprot_accession": "P28306", "uniprot_release": "2026_03" } ], "pfam_id": "PF02618", "short_name": "YceG", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yced-pf02620.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yced-pf02620.yaml" } ], "pfam_ids": [ "PF02620" ], "protein_name": "Uncharacterized protein YlbN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKWTIYQLHQMPKQSFEFDETVELNELTKLNSDIRRISPVRVKGRADIKSKQVSFDFTISGEMLLPCSRTLVDVPYPFEISTKELFIFHHTDDIEDDDVHIVEDDTIDITPIVKEEILLEIPMQIFCESEQEKGAAPQEGKDWQVISEEDKKNQVDPRLAALEKLLKQDDES", "sequence_length": 172, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "07fec289043b3e6ab66e674509951f16171a527bf2de7af4a546477b3c056c1a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34445.json", "taxon_id": "224308", "uniprot_accession": "O34445", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/23s-rrna-accumulation-protein-yced-nf008395.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008395", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/23s-rrna-accumulation-protein-yced-nf008395.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yced-pf02620.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yced-pf02620.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AB28", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02620" ], "protein_name": "Large ribosomal RNA subunit accumulation protein YceD", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "69a51ce1306c684f02f5006fad7d7f6bfb76cc5fb1e04c040045af3ca5049de6", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAVLNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASLKRK", "sequence_length": 173, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "69a51ce1306c684f02f5006fad7d7f6bfb76cc5fb1e04c040045af3ca5049de6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AB28.json", "taxon_id": "83333", "uniprot_accession": "P0AB28", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yced-pf02620.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yced-pf02620.yaml" } ], "pfam_ids": [ "PF02620" ], "protein_name": "Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVRCLISPNLLNSKIKVSGNTHHLPFSSLSKKHQASSPIQAAINGGGSSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASMGLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYVRPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKKK", "sequence_length": 229, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1b26ac3bc1f50b0f132c2872995e4de0f631c5b1f4c35a4fe32d0d274886a37c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9C5M1.json", "taxon_id": "3702", "uniprot_accession": "Q9C5M1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yced-pf02620.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yced-pf02620.yaml" } ], "pfam_ids": [ "PF02620" ], "protein_name": "Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLVCSLSCVAPLPQTKQSRPSFLKLETCTLSLSSPAGYPNFTTGIRKHISYLFTEPIKLPRLAKSRILVSQESFTETSTIDMDWEDQEEIEDTGSPWEGSVMYRRNASVTHVEYCTTLERLGLGRLSTDVSKKRASAMGLRVTKDVKDYPDGTPVQVSVDVIRKKKKLRLDGIVRTVITLGCNRCGESTGESIFSNFSLLLTEEPVEEPDVIDLGFTFGNDKEEGEDDDDNDDSWIDWEDKLHFPPEVKEIDISKHIRDLVHLEITITAICDSACKGMCLKCGANLNKRKCDCGREEKDKGYGPLGNLREQMQQKEGLRN", "sequence_length": 321, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2c2c9f934dd78dd7e1731635ad945e20f43d54e4f7a046c21d47f90c73ed1fd6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LT27.json", "taxon_id": "3702", "uniprot_accession": "Q9LT27", "uniprot_release": "2026_03" } ], "pfam_id": "PF02620", "short_name": "YceD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF02621", "short_name": "VitK2_biosynth", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf179-pf02622.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02622", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf179-pf02622.yaml" } ], "pfam_ids": [ "PF02622" ], "protein_name": "UPF0301 protein Mmc1_0726", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFATLAGKFLIAVPSLADPFFERTVLYLCAHNEDGALGLVINQPLDTTMSQMAGYLELDWQRPGVDRVYMGGPVSPEQGFVLFEQALDLPGIMMLPDDLYMGTNPDIIRLMGRAGAQERFLFALGYAGWEAGQLEHELQENSWLVCDAQRSILFDMGYAQRWEAAIRSMGIDPALLVDASHGFAN", "sequence_length": 186, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6a25e844b645539b13fb75202e2143da8f12332ce24155d2f7cb3a3e4c59af18", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0L5K4.json", "taxon_id": "156889", "uniprot_accession": "A0L5K4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium ulcerans (strain Agy99)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf179-pf02622.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02622", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf179-pf02622.yaml" } ], "pfam_ids": [ "PF02622" ], "protein_name": "UPF0301 protein MUL_0052", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPQEDPEDHVAPAAQRVRAGTLLLANTDLLEPTFRRSVIYIVEHNDGGTLGVVLNRPSETAVHNVLPQWAKLAAKPKTMFIGGPVKRDAALCLATLRVGADPGGVSGLRHVAGRIVMVDLDADPDLIAPLVEGVRIFAGYSGWTIGQLEGEIERDDWIVLSALPSDVLVPPRADLWGRTLRRQPWPLSLLATHPIDVSRN", "sequence_length": 201, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "22c0d499e1066652637bdbb1c82be8d1635c1f3987edaef4dcc39c0f850d14a1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0PKF8.json", "taxon_id": "362242", "uniprot_accession": "A0PKF8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/yqge-algh-family-protein-nf001266.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF001266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/yqge-algh-family-protein-nf001266.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf179-pf02622.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02622", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf179-pf02622.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/vc0467-like-3-40-1740-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.1740.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/vc0467-like-3-40-1740-10.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/vc0467-like-domains-3-30-70-1300.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.70.1300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/vc0467-like-domains-3-30-70-1300.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0A8W5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02622" ], "protein_name": "UPF0301 protein YqgE", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e64ad4a36684009cce62b1ef6c8da14da57281af19456d3bd17dcdac7ddb41af", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNLQHHFLIAMPALQDPIFRRSVVYICEHNTNGAMGIIVNKPLENLKIEGILEKLKITPEPRDESIRLDKPVMLGGPLAEDRGFILHTPPSNFASSIRISDNTVMTTSRDVLETLGTDKQPSDVLVALGYASWEKGQLEQEILDNAWLTAPADLNILFKTPIADRWREAAKLIGVDILTMPGVAGHA", "sequence_length": 187, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e64ad4a36684009cce62b1ef6c8da14da57281af19456d3bd17dcdac7ddb41af", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A8W5.json", "taxon_id": "83333", "uniprot_accession": "P0A8W5", "uniprot_release": 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"Uncharacterized protein YqeB", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ee0bcf04c22b0cdca08e2c1ae86c0df6aebf026b09ef7a4b9cac5f37203d9ec2", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNIFTEAAKLEEQNCPFAMAQIVDSRGSTPRHSAQMLVRADGSIVGTIGGGMVERKVIEESLQALQERKPRLFHGRMARNGADAVGSDCGGAMSVFISVHGMRPRLVLIGAGHVNRAIAQSAALLGFDIAVADIYRESLNPELFPPSTTLLHAESFGAAVEALDIRPDNFVLIATNNQDREALDKLIEQPIAWLGLLASRRKVQLFLRQLREKGVAEEHIARLHAPVGYNIGAETPQEIAISVLAEILQVKNNAPGGLMMKPSHPSGHQLVVIRGAGDIASGVALRLYHAGFKVIMLEVEKPTVIRCTVAFAQAVFDGEMTVEGVTARLATSSAEAMKLTERGFIPVMVDPACSLLDELKPLCVVDAILAKQNLGTRADMAPVTIALGPGFTAGKDCHAVIETNRGHWLGQVIYSGCAQENTGVPGNIMGHTTRRVIRAPAAGIMRSNVKLGDLVKEGDVIAWIGEHEIKAPLTGMVRGLLNDGLAVVGGFKIGDIDPRGETADFTSVSDKARAIGGGVLEALMMLMHQGVKATKEVLEVA", "sequence_length": 541, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ee0bcf04c22b0cdca08e2c1ae86c0df6aebf026b09ef7a4b9cac5f37203d9ec2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q46808.json", "taxon_id": "83333", "uniprot_accession": "Q46808", "uniprot_release": "2026_03" } ], "pfam_id": "PF02625", "short_name": "XdhC_CoxI", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, 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"Pfam:PF02626", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ct-a-b-pf02626.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ct-c-d-pf02682.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02682", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ct-c-d-pf02682.yaml" } ], "pfam_ids": [ "PF00289", "PF00364", "PF01425", "PF02626", "PF02682", "PF02785", "PF02786", "PF21986" ], "protein_name": "Urea amidolyase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ah-c-pf21986.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21986", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ah-c-pf21986.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ct-a-b-pf02626.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02626", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ct-a-b-pf02626.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ct-c-d-pf02682.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02682", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ct-c-d-pf02682.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P32528", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00289", "PF00364", "PF01425", "PF02626", "PF02682", "PF02785", "PF02786", "PF21986" ], "protein_name": "Urea amidolyase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f5bda708802f37b2f509deef323ab714b08fa28e6c117ae40388b6d0f288d066", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTVSSDTTAEISLGWSIQDWIDFHKSSSSQASLRLLESLLDSQNVAPVDNAWISLISKENLLHQFQILKSRENKETLPLYGVPIAVKDNIDVRGLPTTAACPSFAYEPSKDSKVVELLRNAGAIIVGKTNLDQFATGLVGTRSPYGKTPCAFSKEHVSGGSSAGSASVVARGIVPIALGTDTAGSGRVPAALNNLIGLKPTKGVFSCQGVVPACKSLDCVSIFALNLSDAERCFRIMCQPDPDNDEYSRPYVSNPLKKFSSNVTIAIPKNIPWYGETKNPVLFSNAVENLSRTGANVIEIDFEPLLELARCLYEGTWVAERYQAIQSFLDSKPPKESLDPTVISIIEGAKKYSAVDCFSFEYKRQGILQKVRRLLESVDVLCVPTCPLNPTMQQVADEPVLVNSRQGTWTNFVNLADLAALAVPAGFRDDGLPNGITLIGKKFTDYALLELANRYFQNIFPNGSRTYGTFTSSSVKPANDQLVGPDYDPSTSIKLAVVGAHLKGLPLHWQLEKVNATYLCTTKTSKAYQLFALPKNGPVLKPGLRRVQDSNGSQIELEVYSVPKELFGAFISMVPEPLGIGSVELESGEWIKSFICEESGYKAKGTVDITKYGGFRAYFEMLKKKESQKKKLFDTVLIANRGEIAVRIIKTLKKLGIRSVAVYSDPDKYSQHVTDADVSVPLHGTTAAQTYLDMNKIIDAAKQTNAQAIIPGYGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHSARQIAQKAGVPLVPGSLLITSVEEAKKVAAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIFETVKHQGETFFGDAGVFLERFIENARHVEVQLMGDGFGKAIALGERDCSLQRRNQKVIEETPAPNLPEKTRLALRKAAESLGSLLNYKCAGTVEFIYDEKKDEFYFLEVNTRLQVEHPITEMVTGLDLVEWMIRIAANDAPDFDSTKVEVNGVSMEARLYAENPLKNFRPSPGLLVDVKFPDWARVDTWVKKGTNISPEYDPTLAKIIVHGKDRDDAISKLNQALEETKVYGCITNIDYLKSIITSDFFAKAKVSTNILNSYQYEPTAIEITLPGAHTSIQDYPGRVGYWRIGVPPSGPMDAYSFRLANRIVGNDYRTPAIEVTLTGPSIVFHCETVIAITGGTALCTLDGQEIPQHKPVEVKRGSTLSIGKLTSGCRAYLGIRGGIDVPKYLGSYSTFTLGNVGGYNGRVLKLGDVLFLPSNEENKSVECLPQNIPQSLIPQISETKEWRIGVTCGPHGSPDFFKPESIEEFFSEKWKVHYNSNRFGVRLIGPKPKWARSNGGEGGMHPSNTHDYVYSLGAINFTGDEPVIITCDGPSLGGFVCQAVVPEAELWKVGQVKPGDSIQFVPLSYESSRSLKESQDVAIKSLDGTKLRRLDSVSILPSFETPILAQMEKVNELSPKVVYRQAGDRYVLVEYGDNEMNFNISYRIECLISLVKKNKTIGIVEMSQGVRSVLIEFDGYKVTQKELLKVLVAYETEIQFDENWKITSNIIRLPMAFEDSKTLACVQRYQETIRSSAPWLPNNVDFIANVNGISRNEVYDMLYSARFMVLGLGDVFLGSPCAVPLDPRHRFLGSKYNPSRTYTERGAVGIGGMYMCIYAANSPGGYQLVGRTIPIWDKLCLAASSEVPWLMNPFDQVEFYPVSEEDLDKMTEDCDNGVYKVNIEKSVFDHQEYLRWINANKDSITAFQEGQLGERAEEFAKLIQNANSELKESVTVKPDEEEDFPEGAEIVYSEYSGRFWKSIASVGDVIEAGQGLLIIEAMKAEMIISAPKSGKIIKICHGNGDMVDSGDIVAVIETLA", "sequence_length": 1835, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f5bda708802f37b2f509deef323ab714b08fa28e6c117ae40388b6d0f288d066", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P32528.json", "taxon_id": "559292", "uniprot_accession": "P32528", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/5-oxoprolinase-atp-hydrolyzing-activity-go0017168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0017168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/5-oxoprolinase-atp-hydrolyzing-activity-go0017168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/5-oxoprolinase-subunit-pxpc-nf045499.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF045499", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/5-oxoprolinase-subunit-pxpc-nf045499.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/carboxyltransferase-domain-subdomain-a-and-b-ipr003778.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003778", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/carboxyltransferase-domain-subdomain-a-and-b-ipr003778.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/5-oxoprolinase-urea-amidolyase-family-protein-tigr00724.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00724", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/5-oxoprolinase-urea-amidolyase-family-protein-tigr00724.yaml" } ], "pfam_ids": [ "PF02626" ], "protein_name": "5-oxoprolinase subunit C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQLTVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGIDVPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKSKRDSMEAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKARQDQQRYFEQLAWRLHNEN", "sequence_length": 310, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b6ffab68eafe0f419c776004c744e80ba3809b1f3bfa95656460592e7a0e6ed1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75745.json", "taxon_id": "83333", "uniprot_accession": "P75745", "uniprot_release": "2026_03" }, { "evidence_scope": 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"7014364ce2436222b721ca2dea327a7c849c11dd8c3a3041e69923a2faf28f47", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK", "sequence_length": 289, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7014364ce2436222b721ca2dea327a7c849c11dd8c3a3041e69923a2faf28f47", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P0AGE9.json", "taxon_id": "83333", "uniprot_accession": 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"record_id": "PROSITE:PS01216", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/succinyl-coa-lig-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/succinyl-coa-lig-3.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/succinyl-coa-lig-3.yaml" } ], "pfam_ids": [ "PF00285", "PF00549", "PF02629", "PF16114", "PF24948" ], "protein_name": "ATP-citrate synthase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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12025 / NBRC 103806 / TLS)", "origins": [ { "cited_uniprot_accession": "Q8KDG2", "commit": "62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "TraitMech", "path": "data/traits/metabolism/reductive_tca_cycle.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "traitmech:000021", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/TraitMech/blob/62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b/data/traits/metabolism/reductive_tca_cycle.yaml" } ], "pfam_ids": [ "PF00285", "PF00549", "PF02629" ], "protein_name": "Citrate lyase, subunit2", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/atp-grasp-3-pf02655.yaml" } ], "pfam_ids": [ "PF02655", "PF18301" ], "protein_name": "Tyramine--L-glutamate ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MILFFEYAIASGFEDEGILEEGKMMFNTLLNQFLEIDNVTSLIHKDFADDYKDFENLKIVEIEDDKDIEIKLNDILKNEKIDYALTIAPEDENILYNLTKIIEKYPVKNLGCSSNAIKVAGDKYLTYLTIKDYVKTPKTFKPKKYVIKKIDGCGGKFNLFDENFLIQEFVEGESLSVSLIVGKKIYPLSLNRQYIDERGFVGGEVNIKHRLKDEIFNEAIKAVKCIDGLNGYVGVDVIVNDEIYIIEINPRITTTIYGLKTEPSLAELLIKNANNEELTFKVEGKEFTINK", "sequence_length": 291, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e94cd7c1bb5076a3c520f311e90c8a5ef3a14181d13d0d17ac446c55119bd624", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C7P8V7.json", "taxon_id": "573064", "uniprot_accession": "C7P8V7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptantibioticus cattleyicolor (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/atp-grasp-3-pf02655.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02655", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/atp-grasp-3-pf02655.yaml" } ], "pfam_ids": [ "PF02655", "PF18105", "PF18604" ], "protein_name": "L-propargylglycine--L-glutamate ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYGAGVVTRMNEAERFHMTDPGSTKILIYAFNYADRMLEEVPYLRYSAERSLCFLGDLRDPGTRLVVITSEAVDPATLDYHLRDVFRFDEPALADVRRRLTLLTPASRAARPLDSLVLEDEALVETLRRAVAERPAGTIVDFSASPATDELGRRTGATPEEGDHAFVARWGSKSGGKEICLRAGVAVPGGTSEVLRSEAEVVEAIHRLSCGTAAARRAMVKLDAITWAASIGNVLIDRDKLRHTGDLVGSAEVIRLPAEEFRRELAEQGAIVEEFLEEITDSPSGLGHIERDGTVRVVACHDQVLSGGQYWGCRFPADERWRPEITDAVRRTGEVLSGLGHRGAFGVDFVVAGERGLLAVEINLRKVGPSHVVRYAEALVGARVGADGMLRGADGRPVYYTHGRLLEPETLGKLNPRTAVERLRAEGLLYRHDTGEGVALHVLGALNACGFVELTALARSPEAADGYSRAAQALLTGPYPSA", "sequence_length": 482, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "042e1877a4c05d62cea66f8b1a8276bfdcacdd819c72cd118686d934bb79ec84", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G8XHD8.json", "taxon_id": "1003195", "uniprot_accession": "G8XHD8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/coenzyme-f420-2-alpha-glutamyl-ligase-activity-go0043774.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0043774", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/coenzyme-f420-2-alpha-glutamyl-ligase-activity-go0043774.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atp-grasp-fold-ipr011761.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011761", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atp-grasp-fold-ipr011761.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atp-grasp-fold-pylc-type-ipr003806.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003806", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atp-grasp-fold-pylc-type-ipr003806.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/atp-grasp.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50975", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/atp-grasp.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-30-36-100-2-30-36-100.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.30.36.100", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-30-36-100-2-30-36-100.yaml" } ], "pfam_ids": [ "PF02655" ], "protein_name": "Uncharacterized protein MJ0776", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNFTLFLFSCLYFIGGNLKALVLGINTRPVVNSLKKLGFYVYSVSYYAPEDLNADEKYYLINPLVHGRLKENYDENKLIEIANKLADEVDCIFITSGVFEFENSKIPGWDNVIGNGPKKINEISNKYKTYKKLKNLGFNIPETKKINNKTQLYKFLEEFKTCILKPIYGSGGSILKIELNNFDDEIINEIKFPIIAQEYIRGKSFSANFIGNTFITFNKQIIIKGMYAGNLTPYINLPNKFVEIFGEVIESFELKGMSGIDFLIKDNGPYIVDINPRILGTYETIEMSASQNLAMVLLNNKYAKEIKPRKVYIKRILFAKEKIIANISKRDFIHDIPKKNAVIEKGEPIATVIAKENIKSIINSVYEECAEYEKRKEDRENI", "sequence_length": 383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a74a9603fd37bba831f73a2a0687569f775034a0c126de4b7b64c39749cb488f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58186.json", "taxon_id": "243232", "uniprot_accession": "Q58186", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/tyramine-l-glutamate-ligase-nf040722.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF040722", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/tyramine-l-glutamate-ligase-nf040722.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atp-grasp-fold-pylc-type-ipr003806.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003806", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atp-grasp-fold-pylc-type-ipr003806.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tyramine-l-glutamate-ligase-pre-atp-grasp-domain-ipr040803.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040803", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tyramine-l-glutamate-ligase-pre-atp-grasp-domain-ipr040803.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/preatp-grasp-3-pf18301.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18301", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/preatp-grasp-3-pf18301.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-30-36-100-2-30-36-100.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.30.36.100", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-30-36-100-2-30-36-100.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-40-50-11770-3-40-50-11770.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.50.11770", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-40-50-11770-3-40-50-11770.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q58225", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02655", "PF18301" ], "protein_name": "Tyramine--L-glutamate ligase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f88df4a3dac0f8d6ff0a9bcd83d4e41bda98944aaef438f4c71c610350e9e363", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLLLQSILITKIMVIQLILFFEYALASGFEDKNILKEGKMMFDTLLKQFLEIDKVISLLYKDFVDNYIDFKNLEIVKIKKENEIENKLKSLLKSENIDYALVVAPEDEDILYNLTKIIESYPVKNLGCSSEAIKIAGNKYLTYLAIKDAVKTPKTFPPKKYVVKKIDSCGGKFNLFDENFLIQEFIDGENLSVSLIVGKKIHPLSLNRQYIDKRGFVGGEVNINHKLKDKIFNEAIKAVKCINGLNGYVGVDVIVNNDGIYIIEINPRITTTIYGLKTNPSLAELLIKNANNEELKFKVKGEKFTIDK", "sequence_length": 308, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f88df4a3dac0f8d6ff0a9bcd83d4e41bda98944aaef438f4c71c610350e9e363", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58225.json", "taxon_id": "243232", "uniprot_accession": "Q58225", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Desulfotalea psychrophila (strain LSv54 / DSM 12343)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/atp-grasp-6-pf18419.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18419", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/atp-grasp-6-pf18419.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/glu-cys-ligase-pf04262.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04262", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/glu-cys-ligase-pf04262.yaml" } ], "pfam_ids": [ "PF02655", "PF04262", "PF18419" ], "protein_name": "Glutathione biosynthesis bifunctional protein GshAB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFSKNILDSLPPLISKQIFEGFFGFEKENIRVDSRGKLALTPHPRELGEKTSHPYITTDFSESQIEIITPPLPSIAESLGFLETLHDLVSIELKDEYLWPQSAPPILPEREEDIPIAHFGGEFREQEEYRLQLAKIYGRKRQMFSGIHFNISLPERFLELLHEEGKQEQPFAEFREDIYMKTVRNFLRHRWFLICLLGASPVIHKSYRKHCIDMLSPFAKDAYHFPYATSIRNNICGYRNTQDFHLNYSTLTDYRESLQELVEKKVLRDIRENYAPIRIKTTTDPKRINHLEIRLLDLNPFFKTGVNPLHAEIIHIFLIYCLLCPEETSFTSKEQETANRNQEQAATEGLNPGAIICDADGNEQRLDKQLAHCLQEIQQTVSPHLPPEYRAGMEELERLVQNQASRPTDTLLKEIKQEGFTEWHMKQALKFLKKSHDEQFIFHGLRDMELSTQLLLRRAALRGVSFEIMDRQENFVCLEQAGKREYVMQASRTSLDNYISVLSMENKVITKKILDQAGINTPKGRSYSSPSEALADYPYYRGRAIVIKPKSTNFGIGITIIKENNRHDFFAQGIAQAFKHEATVLIENFSSGKEYRFFIVNDQVVGILHRVPANVTGDGTSSVQVLVTEKNKNPLRGRGYRTPLEKIKLEETEEMFLASQGYSFATVPAKDQRIYLRENSNISTGGDSIDFTDKVPQSYKDIAVRAAQALQVKITGLDMMIDSLEEDAAEDNFSIIELNFNPAIHIHCHPYIGKNRHLDDKILDALGFTGAEEAGEKA", "sequence_length": 779, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f6c0f826e1aeb3390ff5bf6c61a357de707bd73b12dad7052828e6a7815df74c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ANW2.json", "taxon_id": "177439", "uniprot_accession": "Q6ANW2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterococcus faecalis (strain ATCC 700802 / V583)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/atp-grasp-3-pf02655.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02655", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/atp-grasp-3-pf02655.yaml" } ], "pfam_ids": [ "PF02655", "PF04262", "PF18419" ], "protein_name": "Glutathione biosynthesis bifunctional protein GshAB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNYRELMQKKNVRPYVLMARFGLEKENQRSTREGLLATTEHPTVFGNRSYHPYIQTDFSETQLELITPVANSGTEMLRFLDAIHDVARRSIPEDEMLWPLSMPPQLPTKDEEIKIAKLDQYDAVLYRRYLAKEYGKRKQMVSGIHFNFEYDQALIQQLYDEQSEVTDCKQFKTKVYMKVARNFLRYRWLITYLFGASPVSEDRYFRVYDDQPQEPVRSIRNSTYGYRNHDNVKVSYASLERYLEDIHRMVENGLLSEEKEFYAPVRLRGGKQMSDLPKTGIRYIELRNLDLNPFSRLGIVEDTVDFLHYFMLYLLWTDEKEEADEWVKTGDIFNEQVALGHPHETIKLIAEGDRIFSEMIDMLDALGIRKGKEVVGKYYQQLRNPQDTVSGKMWTIIQENSNSELGNIFGNQYQSMAFERPYQLAGFREMELSTQIFLFDAIQKGLEIEILDEQEQFLKLQHGEHIEYVKNANMTSKDNYVVPLIMENKTVTKKILSAAGFHVPGGEEFSSFIEAQEAHLRYANKAFVVKPKSTNYGLGITIFKEGASLEDFTEALRIAFKEDTAVLIEEFLPGTEYRFFVLDNDVKAIMLRVPANVTGDGKHTVEELVAAKNSDPLRGTNHRAPLELIQLNDLEKLMLKEQGLTIYSVPEKEQIVYLRENSNVSTGGDSIDMTDVIDDSYKQIAIEAVAALGAKICGIDLIIPDKDVKGTRDSLTYGIIEANFNPAMHMHVYPYAGQGRRLTMDVLKLLYPEVVQ", "sequence_length": 756, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2373211234214573e577da77494bd6f1b60654ffc4f0b890e2bca6bfc08fb74c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q82ZG8.json", "taxon_id": "226185", "uniprot_accession": "Q82ZG8", "uniprot_release": "2026_03" } ], "pfam_id": "PF02655", "short_name": "ATP-grasp_3", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf202-ipr003807.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003807", "section": "canonical_examples", "url": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-30-1360-40-3-30-1360-40.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.1360.40", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-30-1360-40-3-30-1360-40.yaml" } ], "pfam_ids": [ "PF02682" ], "protein_name": "5-oxoprolinase subunit B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVRYQIEQLGDSAMMIRFGEEINEQVNGIVHAAAAYIEEQPFPGFIECIPAFTSLTVFYDMYEVYKHLPQGISSPFESVKRDVEERLAEIAEDYEVNRRIVEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHTNGEYVVYMLGFAPGFPFLGGMSKRIAAPRKSSPRPSIPAGSVGIAGLQTGVYPISTPGGWQLIGKTPLALFRPQENPPTLLRAGDIVKFVRISEKDYHAYKEESN", "sequence_length": 240, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "077ef85f9093031bc5512d2bc347946dbf81001263fafef59d80f99d3ec64846", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P60495.json", "taxon_id": "224308", "uniprot_accession": "P60495", "uniprot_release": "2026_03" } ], "pfam_id": "PF02682", "short_name": "CT_C_D", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 16, "discovery_scanned": true, "example_count": 16, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/abc3-transporter-permease-c-terminal-ipr003838.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003838", "section": "canonical_examples", "url": 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"data/traits/sequence/domain/interpro/macb-like-periplasmic-core-domain-ipr025857.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025857", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/macb-like-periplasmic-core-domain-ipr025857.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/macb-pcd-pf12704.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12704", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/macb-pcd-pf12704.yaml" } ], "pfam_ids": [ "PF02687", "PF12704" ], "protein_name": "Uncharacterized ABC transporter permease 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"link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/abc3-transporter-permease-c-terminal-ipr003838.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/abc3-transporter-permease-c-terminal-ipr003838.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O34741", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/macb-pcd-pf12704.yaml" } ], "pfam_ids": [ "PF02687", "PF12704" ], "protein_name": "Uncharacterized ABC transporter permease YvrN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLEHIRISFQSIFSHKLRSILTMLGVIIGIAAIIAIVSMLKGQSEQLKQSMIGMGNNAINVVYQPSGGEEESGGPQVSYASAPPVAEETVKAIKSDPMVKGLSLYYLSEGASVFHLTNVSYPQVYGVDDDYFDMFPIRITEGRKLTENDLNSTHQVVMINEAVRDELFPDGEALHKSIEMNGVPFKVVGVFKEKNQQESMFEGDYANPVLYVPKKVWPLIEGFDAPTQIAVQADSSEHIQEAGVMAADLLNQGLSEAELEKAEYSVMDLQEIAQEVESFNQSFALLLGGIASISLLVGGIGVMNIMLVSVTERTREIGIKKALGAKRRVILFQFLTEAVVLTSIGGILGVLAGFGIAKLLTVIFPMPFIVSIPAVVGALIFSMAVGIIFGLLPSIKASKLQPVDALRYE", "sequence_length": 409, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2f1af19691c4eb0456a0b55bd7e33d84ae40d13f398e96cc38b099e492dff15f", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P46324.json", "taxon_id": "224308", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ", "sequence_length": 414, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "20c2dd320a9977d7222199c08942aa9286937ca83a0f6f19b0f586a1396ac232", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P75958.json", "taxon_id": "83333", "uniprot_accession": "P75958", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/putative-abc-transporter-permease-subunit-ybbp-nf041854.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF041854", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/putative-abc-transporter-permease-subunit-ybbp-nf041854.yaml" } ], "pfam_ids": [ "PF02687" ], "protein_name": "Uncharacterized ABC transporter permease YbbP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIARWFWREWRSPSLLIVWLALSLAVACVLALGNISDRMEKGLSQQSREFMAGDRALRSSREVPQAWLEEAQKRGLKVGKQLTFATMTFAGDTPQLANVKAVDDIYPMYGDLQTNPPGLKPQAGSVLLAPRLMALLNLKTGDTIDVGDATLRIAGEVIQEPDSGFNPFQMAPRLMMNLADVDKTGAVQPGSRVTWRYKFGGNENQLDGYEKWLLPQLKPEQRWYGLEQDEGALGRSMERSQQFLLLSALLTLLLAVAAVAVAMNHYCRSRYDLVAILKTLGAGRAQLRKLIVGQWLMVLTLSAVTGGAIGLLFENVLMVLLKPVLPAALPPASLWPWLWALGTMTVISLLVGLRPYRLLLATQPLRVLRNDVVANVWPLKFYLPIVSVVVVLLLAGLMGGSMLLWAVLAGAVVLALLCGVLGWMLLNVLRRMTLKSLPLRLAVSRLLRQPWSTLSQLSAFSLSFMLLALLLVLRGDLLDRWQQQLPPESPNYFLINIATEQVAPLKAFLAEHQIVPESFYPVVRARLTAINDKPTEGNEDEALNRELNLTWQNTRPDHNPIVAGNWPPKADEVSMEEGLAKRLNVALGDTVTFMGDTQEFRAKVTSLRKVDWESLRPNFYFIFPEGALDGQPQSWLTSFRWENGNGMLTQLNRQFPTISLLDIGAILKQVGQVLEQVSRALEVMVVLVTACGMLLLLAQVQVGMRQRHQELVVWRTLGAGKKLLRTTLWCEFAMLGFVSGLVAAIGAETALAVLQAKVFDFPWEPDWRLWIVLPCSGALLLSLFGGWLGARLVKGKALFRQFAG", "sequence_length": 804, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cf3a0d8f41853fac90f0829160be5438c49d4d219fb51b288167a1a802d53929", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P77504.json", "taxon_id": "83333", "uniprot_accession": "P77504", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/macb-like-periplasmic-core-domain-ipr025857.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025857", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/macb-like-periplasmic-core-domain-ipr025857.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/macb-pcd-pf12704.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12704", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/macb-pcd-pf12704.yaml" } ], "pfam_ids": [ "PF02687", "PF12704" ], "protein_name": "Uncharacterized ABC transporter permease YclI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNFIKRAFWNMKAKKGKTLLQLFVFTVICVFVLSGLAIQSAAQKSSELARQELGGSVTLQVDRQKQMEKQQDSGEKRSFESTPIKVSDANKLAALDHVKSYNYTTSASANAGNFDAIESSSSSDSSSSSSSSNAKNSQGGGQGGPQMVQADLSIEGVISTALVDDFSDGDSKITDGRAITKSDVGKKVTVINETLAEENDLSVGDSITIESATDEDTTVKLKIVGIYKTTSSGDDQAQNFSFLNPYNKLYTPYTATAALKGDDYKNTIDSAVYYMDDAKNMDTFVKAAKKTSIDFDTYTLNTNDQLYQQMVGPIENVASFSKNVVYLVSVAGAVILGLIVMMSIRERKYEMGVLMAIGEKRWKLIGQFLTEILIVAVIAIGLASVTGNLVANQLGNQLLSQQISSSTDSTQTASGQMPGGGGGMGGKMFGHSSSNVDVIDSLNVAVSMNDMLILGGIGILIAIIATLLPSISVLRLHPKTILTKQE", "sequence_length": 486, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "46466b9bd2db52bb7f8c0b2cf835908d0153e1c6cc5b4b41aa0e5397c6ace979", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P94412.json", "taxon_id": "224308", "uniprot_accession": "P94412", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ftsx-ecd-pf18075.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18075", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ftsx-ecd-pf18075.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ftsx-pf02687.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02687", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ftsx-pf02687.yaml" } ], "pfam_ids": [ "PF02687", "PF18075" ], "protein_name": "Cell division protein FtsX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISRFFRHLFEALKSLKRNGWMTVAAVSSVMITLTLVAIFASVIFNTAKLATDIENNVRVVVYIRKDVEDNSQTIEKEGQTVTNNDYHKVYDSLKNMSTVKSVTFSSKEEQYEKLTEIMGDNWKIFEGDANPLYDAYIVEANAPNDVKTIAEDAKKIEGVSEVQDGGANTERLFKLASFIRVWGLGIAALLIFIAVFLISNTIRITIISRSREIQIMRLVGAKNSYIRGPFLLEGAFIGLLGAIAPSVLVFIVYQIVYQSVNKSLVGQNLSMISPDLFSPLMIALLFVIGVFIGSLGSGISMRRFLKI", "sequence_length": 308, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fe254ee10f920d25f759af0824c0c3d88b68ef3d15d662ce3af15be61ece908b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q04LE4.json", "taxon_id": "373153", "uniprot_accession": "Q04LE4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/abc3-transporter-permease-c-terminal-ipr003838.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/abc3-transporter-permease-c-terminal-ipr003838.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/macb-like-periplasmic-core-domain-ipr025857.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025857", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/macb-like-periplasmic-core-domain-ipr025857.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/macb-pcd-pf12704.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12704", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/macb-pcd-pf12704.yaml" } ], "pfam_ids": [ "PF02687", "PF12704" ], "protein_name": "Uncharacterized ABC transporter permease MJ0797", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYFELAKRNLKRNLLRSILALLGIIIGVAAISSLGILGGGLKQGIMENLGSISNYIIVFPNYQNGYTSFDKRDIEKLRVLNCKVIPVYATSDFVYIKGKNRKAYANIFGIDKNDIKYLNLKVKVSDTSVAVDTFFSNVNDVNVGNQLEIKNISLRICGIYNSTFLFPDNSLILTAKTYRRFYGENNYNYSRIILYVKNINDIDKIKNETDKILNRKEKKCIIISLNSILEAINGVITKVSYFLMGIGAISLLVAGIGIGNVMLMSVVERTTEIGVMRSIGASKKDIIILFLYEALILGVIGSLIGAFLSLFFGYLIVHYLLKTSLSYYAIFYMIIGIIFGILTSLISALYPAYKASKLDPIKSLRNE", "sequence_length": 367, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "299c20aa00651103bda282fe94011e891003c37f4585a0f17cde23bdfcc41050", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58207.json", "taxon_id": "243232", "uniprot_accession": "Q58207", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/macb-like-periplasmic-core-domain-ipr025857.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025857", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/macb-like-periplasmic-core-domain-ipr025857.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/macb-pcd-pf12704.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12704", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/macb-pcd-pf12704.yaml" } ], "pfam_ids": [ "PF02687", "PF12704" ], "protein_name": "Uncharacterized ABC transporter permease MJ1507", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKSMKVDDIITFAFKNIKQKRTQSLLTIIGIVIGVLAMVSLISLGYGVQNYIHEEMMKMGSNKITILPMKQFGVPPSHLFTKKEIKAIKNVKGVDTVMYGWYGGCEIEYNGEKKFVSYYYAIPSKLREVYKDSGYDIEEGRWLEDNDKYACVIGYGTAHNLFDREIKVGDVIKIKDKKFRVVGILKQIGNQQDDNSIILNIDVGEKLFGNEGKYNFISVTVKEGEDIEKVSEEIKKALKKSFGDEDFSVLTAEQLAKTVSSVLGVITIFVVGVAAISLLVGAVGISNTMHMSILERRKDIGILKALGAETTDILAIFVVESGFLGLFGGIVGLVLGILLAEVIEALAHKMGYLMVNAWISWELIVGVLIFSFLVGVISGYFPARSGAKLNPIETLRGE", "sequence_length": 399, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bea4a3429187c44d0bc6f4a19a97f1da2644f92e1ca94af46ca96f2facfc8999", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58902.json", "taxon_id": "243232", "uniprot_accession": "Q58902", "uniprot_release": "2026_03" } ], "pfam_id": "PF02687", "short_name": "FtsX", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/ampylase-activity-go0070733.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070733", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/ampylase-activity-go0070733.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-adenylylation-go0018117.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0018117", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-adenylylation-go0018117.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/protein-adenylyltransferase-selo-nf040880.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF040880", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/protein-adenylyltransferase-selo-nf040880.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/ydiu-family-protein-nf000658.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF000658", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/ydiu-family-protein-nf000658.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/selo-pf02696.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02696", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/selo-pf02696.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P77649", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02696" ], "protein_name": "Protein nucleotidyltransferase SelO", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f4be1a134f5b4c5a1e69ca60eec150b26dfafb0a9bfc8c6740071e8dbfef28d7", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTLSFVTRWRDELPETYTALSPTPLNNARLIWHNTELANTLSIPSSLFKNGAGVWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRETAEPGAMLMRVAPSHLRFGHFEHFYYRRESEKVRQLADFAIRHYWSHLADDEDKYRLWFSDVVARTASLIAQWQTVGFAHGVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLQRLAQTLSPFVAVDALNEALDSYQQVLLTHYGERMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRDDDYVSRPPDWGKRLEVSCSS", "sequence_length": 478, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f4be1a134f5b4c5a1e69ca60eec150b26dfafb0a9bfc8c6740071e8dbfef28d7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P77649.json", "taxon_id": "83333", "uniprot_accession": "P77649", 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"qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027815", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/csc1-osca1-like-cytosolic-domain-ipr027815.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/csc1-osca1-like-n-terminal-transmembrane-domain-ipr032880.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032880", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/csc1-osca1-like-n-terminal-transmembrane-domain-ipr032880.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/phm7-cyt-pf14703.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14703", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/phm7-cyt-pf14703.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rsn1-7tm-pf02714.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02714", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rsn1-7tm-pf02714.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rsn1-tm-pf13967.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13967", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rsn1-tm-pf13967.yaml" } ], "pfam_ids": [ "PF02714", "PF13967", "PF14703" ], "protein_name": "Hyperosmolality-gated Ca2+ permeable channel 1.8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATLQDIGVSALINLFGAFLFLIAFAVLRIQPINDRVYFPKWYLTGERNSPRRSDRTLVGKFVNLNYKTYFTFLNWMPQAMKMSESEIIRHAGLDSAIFLRIYTLGLKIFAPVMVLALVVLVPVNVSSGTLFFLKKELVVSNIDKLSISNVQPKSSKFFFHIAVEYIFTFWACFMLYREYNNVAIMRLQYLASQRRRPEQFTVVVRNVPDMPGHSVPDTVDQFFKTNHPEHYLCHQAVYNANTYAKLVKQRAKLQRWFDYYVLKHQRNPHKQPTCRTGFLGLWGKRVDSIEYYKQQIKEFDHNMSLERQKVLKDSKLMLPVAFVSFDSRWGAAVCAQTQQSKNPTLWLTSSAPEPRDIYWQNLAIPFISLTIRKLVIGVSVFALVFFYMIPIAFVQSLANLEGLDRVAPFLRPVTRLDFIKSFLQGFLPGLALKIFLWILPTVLLIMSKIEGYIALSTLERRAAAKYYYFMLVNVFLGSIIAGTAFEQLHSFLHQSPSQIPRTIGVSIPMKATFFITYIMVDGWAGIAGEILRLKPLVIFHLKNMFIVKTEEDRVRAMDPGFVDFKETIPSLQLYFLLGIVYTAVTPILLPFILIFFAFAYLVYRHQIINVYNQQYESCGAFWPHVHGRIIASLLISQLLLMGLLASKKAADSTPLLIILPILTLSFHKYCKHRFEPAFRQYPLEEAMAKDKLEKETEPELNMKADLADAYLHPIFHSFEKEVELSSSSSSEKETHQEETPEVRVDKHETQSSSPVTELGTSSHHHHVYNSTSPSSHYASAYEQSSSQYEYHYNTHQYEEHEYRYN", "sequence_length": 806, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c466d2ca3143294daa9d223fd10dd60ae7f8a00e59848cdf5e8cd7b2a19d8a9c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FVQ5.json", "taxon_id": "3702", "uniprot_accession": "Q9FVQ5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/csc1-osca1-like-7tm-region-ipr003864.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003864", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/csc1-osca1-like-7tm-region-ipr003864.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/csc1-osca1-like-cytosolic-domain-ipr027815.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027815", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/csc1-osca1-like-cytosolic-domain-ipr027815.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/csc1-osca1-like-n-terminal-transmembrane-domain-ipr032880.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032880", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/csc1-osca1-like-n-terminal-transmembrane-domain-ipr032880.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/phm7-cyt-pf14703.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14703", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/phm7-cyt-pf14703.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rsn1-7tm-pf02714.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02714", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rsn1-7tm-pf02714.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rsn1-tm-pf13967.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13967", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rsn1-tm-pf13967.yaml" } ], "pfam_ids": [ "PF02714", "PF13967", "PF14703" ], "protein_name": "Hyperosmolality-gated Ca2+ permeable channel 1.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATLKDIGVSAGINILTAFIFFIIFAFLRLQPFNDRVYFSKWYLRGLRSSPASGGGFAGRFVNLELRSYLKFLHWMPEALKMPERELIDHAGLDSVVYLRIYWLGLKIFAPIAMLAWAVLVPVNWTNNELELAKHFKNVTSSDIDKLTISNIPEGSNRFWAHIIMAYAFTIWTCYMLMKEYETVANMRLQFLASEGRRPDQFTVLVRNVPPDPDETVSELVEHFFLVNHPDNYLTHQVVCNANKLADLVSKKTKLQNWLDYYQLKYTRNNSQIRPITKLGCLGLCGQKVDAIEHYIAEVDKTSKEIAEERENVVNDQKSVMPASFVSFKTRWAAAVCAQTTQTRNPTEWLTEWAAEPRDIYWPNLAIPYVSLTVRRLVMNVAFFFLTFFFIIPIAFVQSLATIEGIEKVAPFLKVIIEKDFIKSLIQGLLAGIALKLFLIFLPAILMTMSKFEGFTSVSFLERRSASRYYIFNLVNVFLGSVIAGAAFEQLNSFLNQSPNQIPKTIGMAIPMKATFFITYIMVDGWAGVAGEILMLKPLIIYHLKNAFLVKTEKDREEAMNPGSIGFNTGEPQIQLYFLLGLVYAPVTPMLLPFILVFFALAYVVYRHQIINVYNQEYESAAAFWPDVHGRVITALIISQLLLMGLLGTKHAASAAPFLIALPVITIGFHRFCKGRFEPAFVRYPLQEAMMKDTLERAREPNLNLKGYLQDAYIHPVFKGGDNDDDGDMIGKLENEVIIVPTKRQSRRNTPAPSRISGESSPSLAVINGKEV", "sequence_length": 772, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b2887a72ed8f830093690f130e8333514c1b978a6dfe73c0b82033b6183a06ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9XEA1.json", "taxon_id": "3702", "uniprot_accession": "Q9XEA1", "uniprot_release": "2026_03" } ], "pfam_id": "PF02714", "short_name": "RSN1_7TM", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf222-pf02720.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02720", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf222-pf02720.yaml" } ], "pfam_ids": [ "PF01844", "PF02720" ], "protein_name": "Uncharacterized protein MT1995", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSDTREEISAALDAYHASLSRVLDLKCDALTTPELLACLQRLEVERRRQGAAEHALINQLAGQACEEELGGTLRTALANRLHITPGEASRRIAEAEDLGERRALTGEPLPAQLTATAAAQREGKIGREHIKEIQAFFKELSAAVDLGIREAAEAQLAELATSRRPDHLHGLATQLMDWLHPDGNFSDQERARKRGITMGKQEFDGMSRISGLLTPELRATIEAVLAKLAAPGACNPDDQTPVVDDTPDADAVRRDTRSQAQRHHDGLLAGLRGLLASGELGQHRGLPVTVVVSTTLKELEAATGKGVTGGGSRVPMSDLIRMASNAHHYLALFDGAKPLALYHTKRLASPAQRIMLYAKDRGCSRPGCDAPAYHSEVHHVTPWTTTHRTDINDLTLACGPDNRLVEKGWKTRKNAKGDTEWLPPAHLDHGQPRINRYHHPEKILCEPDDDEPH", "sequence_length": 454, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "22bdde871bea649fa30c990e413e9d7b0a5ea3dc155b74674a1df3e34313e245", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLQ4.json", "taxon_id": "83331", "uniprot_accession": "P9WLQ4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf222-pf02720.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02720", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf222-pf02720.yaml" } ], "pfam_ids": [ "PF01844", "PF02720" ], "protein_name": "Uncharacterized protein Rv1945", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSDTREEISAALDAYHASLSRVLDLKCDALTTPELLACLQRLEVERRRQGAAEHALINQLAGQACEEELGGTLRTALANRLHITPGEASRRIAEAEDLGERRALTGEPLPAQLTATAAAQREGKIGREHIKEIQAFFKELSAAVDLGIREAAEAQLAELATSRRPDHLHGLATQLMDWLHPDGNFSDQERARKRGITMGKQEFDGMSRISGLLTPELRATIEAVLAKLAAPGACNPDDQTPVVDDTPDADAVRRDTRSQAQRHHDGLLAGLRGLLASGELGQHRGLPVTVVVSTTLKELEAATGKGVTGGGSRVPMSDLIRMASNAHHYLALFDGAKPLALYHTKRLASPAQRIMLYAKDRGCSRPGCDAPAYHSEVHHVTPWTTTHRTDINDLTLACGPDNRLVEKGWKTRKNAKGDTEWLPPAHLDHGQPRINRYHHPEKILCEPDDDEPH", "sequence_length": 454, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "22bdde871bea649fa30c990e413e9d7b0a5ea3dc155b74674a1df3e34313e245", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLQ5.json", "taxon_id": "83332", "uniprot_accession": "P9WLQ5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf222-pf02720.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02720", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf222-pf02720.yaml" } ], "pfam_ids": [ "PF01844", "PF02720" ], "protein_name": "Uncharacterized protein Rv1148c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSDTREEISAALDAYHASLSRVLDLKCDALTTPELLACLQRLEVERRRQGAAEHALINQLAGQACEEELGGTLRTALANRLHITPGEASRRIAEAEDLGERRALTGEPLPAQLTATAAAQREGKIGREHIKEIQAFFKELSAAVDLGIREAAEAQLAELATSRRPDHLHGLATQLMDWLHPDGNFSDQERARKRGITMGKQEFDGMSRISGLLTPELRATIEAVLAKLAAPGACNPDDQTPLVDDTPDADAVRRDTRSQAQRNHDAFLAALRGLLASGELGQHKGLPVTIVVSTTLKELEAATGKGVTGGGSRVPMSDLIRMASHANHYLALFDGAKPLALYHTKRLASPAQRIMLYAKDRGCSRPGCDAPAYHSEVHHVTPWTTTHRTDINDLTLACGPDNRLVEKGWKTRKNAHGDTEWLPPPHLDHGQPRINRYHHPAKILCEQDDDEPH", "sequence_length": 454, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "03a56b60f3052817f6a95d97fb16307bbe9155bf9087bc08db9a1d8dacc69661", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM55.json", "taxon_id": "83332", "uniprot_accession": "P9WM55", "uniprot_release": "2026_03" } ], "pfam_id": "PF02720", "short_name": "DUF222", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf223-pf02721.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF02721", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf223-pf02721.yaml" } ], "pfam_ids": [ "PF02721", "PF04057", "PF08646", "PF16900" ], "protein_name": "Replication protein A 70 kDa DNA-binding subunit B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSDAAPSVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPIGTRFTFLASDGKDKIKTMLLTQLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQEKVLIITKLEVVFKALDSEIKCEAEKQEEKPAILLSPKEESVVLSKPTNAPPLPPVVLKPKQEVKSASQIVNEQRGNAAPAARLAMTRRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVEEAEGETFIPQIQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTISLWNDLATTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTIVVNPDLPEAEQLRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNAYISLIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNEKRQRITVRSEAPVDHAAEAKYMLEEIAKLTGC", "sequence_length": 630, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c281f93a71a147eef04b9357e50a7bf189bfa45729cd9b86026e832e15b156b3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q10Q08.json", "taxon_id": "39947", "uniprot_accession": "Q10Q08", "uniprot_release": "2026_03" }, { "evidence_scope": 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"8d6b50fa5613e9fffc59c2aeba8d471181652dba8ee215444e49ca96d4bee6f1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58153.json", "taxon_id": "243232", "uniprot_accession": "Q58153", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/1-8-98-ec1-8-98--.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:1.8.98.-", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/enzymatic_activity/ec/1-8-98-ec1-8-98--.yaml" }, { "cited_uniprot_accession": "", "commit": 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"NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEIKTRRDTSETSVRKDDEEEVEEEQPLSPAARVFHAPEFNCYVISVIGIKKKIDPDVIIEGLKQTLIRHPRFSSKMVSTSVGNKKRQTQSWVRTNVVVTDHVIVSDIQTQNIENGNADAFLETYVSNLTTVPLDISKPLWQLHLLDLKTSDAENVAVLKFHHSLGDGMSLMALVLACMRKTSNPDELPSLPNQNRSSSRSSRLMAGSRGDSRFLWLVMVIWSAIMLVLNTVCDALEFIATTMFLKDTETPIKGDFRFSKSKRMCLVHRTVSLDDIKLIKNTMKMTVNDVVLGVSQAGLSQYLDRRYGEKKKKVGEDQDSKRKATDMPKRIRLRSALLVNLRPNTGIQDLADMMAKGSTCRWGNWIGYIVFPFSIGLRDDPLQHLRRAKRIIDRKKNSLEAALTFVAGKFILKTFGVQVAAKIINRALSNTTMSFSNLIGPIEEISFYGHPITYMAPSVYGHPHALTMHFQSYMNQMTISLTVDPTVISDPHRLLDDWEKSLQSIKAAVQERDSRSLD", "sequence_length": 518, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9899043f9ad97f4be4dce2277c84a91e6f4bc4076d56e04225eedd52ea8877bc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M3B1.json", "taxon_id": "3702", "uniprot_accession": "Q9M3B1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { 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"uniprot_accession": "Q57868", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf234-ipr004256.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR004256", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf234-ipr004256.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf234-pf03008.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf234-pf03008.yaml" } ], "pfam_ids": [ "PF01637", "PF03008" ], "protein_name": "Uncharacterized protein MJECL04", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFVDREEELKALNEKLDSNNFEFIVIYGRRRIGKTKLALKSVENREHIYYLAVEGDNLKHFKRYASKVEPTIEYAKEDWEAYFNFLKDKIIIIDEFPNLIKENPNVLSLFQRIVDIHLKNTKTKLIILGSSISMMGEKVLSYKSPLYGRKTGVLKIKPLKFKHLKEFFPKAIWEELVEIYGFADGIPYYLEKVKLPFWDYLDKEIKRVDSFLRYEVDFLMKYEFEEPTTYKKILEAIAFGNHTLGEIKNYLGFKHSDLTPYLKNLIEVEFIERQTPITESVKSKKGRYYIKDNFIAFYFRYIFPNLSAIEEGIFDIEEIKADYNQYLGFVFEKVAKEFLIELNKMNKLPFKFLKIGRWWHRGEEIDLIALNDNDKKALFVEVKWKDLKDRDVKKIYRDLYRKSKLVGLDDYEKYYAIVGKKIESKENGDCLLFDLEDFS", "sequence_length": 439, 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"MSYMEQIPPYEYYKYVFGTRCAVLACSSFELMMVLLGSLGDSNVLAKLFYLVFLGASAAVSGFNLQQNIDGRDEIKKITGSGDNETRGKAAALVGIPALAAVFVFLCVSGHAFFSLFVLVHVLASIGQLGIEAYEVRNGFCIKAPENKKAVADSYDQNYQILNMVQDSVFDKK", "sequence_length": 173, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d647902e6cc98ec50f1a44aec769a2de72b17a2c198e709fa750fcbc110c7638", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P34282.json", "taxon_id": "6239", "uniprot_accession": "P34282", "uniprot_release": "2026_03" } ], "pfam_id": "PF03057", "short_name": "DUF236", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf237-pf03072.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03072", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf237-pf03072.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf240-pf03086.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03086", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf240-pf03086.yaml" } ], "pfam_ids": [ "PF03072", "PF03086" ], "protein_name": "Uncharacterized protein MG032", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTIHKLFLGLCLPATLGPLLGIVVTNTDQSIKFTSKSNSINKNNQNKELALLRDNLMNEAKVDEPLSFEKRFENFKNKYSDIHSLNNSVFSLHDVYDLLGGFKQSLTTFFDEVIAQQQKIKDADKIFPSTKDNPPKEENPNVLDTLANYQGAGFFPSLGKNGFNLPEAVFQNFTDFRINDYKIKNFNVDLVSENDIIKHDKVRYAFEVKFNIALVLSINKSNVDFDFDFILKTDNFSDIENFNEIFNRKPALQFRFYTKINVHKLSFNGSDSTYIANILLQDQFNLLEIDLNKSIYALDLENAKERFDKEFVQPLYQKRREAKLAWEEEQRRIAEEQRRQEEERARILKELKEKAEKDKRVKEAQNNLQKALGNLDTFFNFFSSGQDRVLLGFDPNKYNVQTREGLFKALQISYSNFKTWTFYISLLGWKEGSVKLLKKPIWNALRDDKAFQYAFGLGPNTSEQQLGRVTLPGYGYEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIGDANDKKHIWISPHTFKLNREYGDGERFKGKAYRFKLSISFELEGHLTAHWWTIAFRGSIPGSWSGKLRVTHEFDGDVPYYRLHTTPPQYRLTDDMKLLFVPHSIQRVTAVGNESINGLLRSQNLHNLERQSYEATAPIDLISYMLYAISDKKPPQK", "sequence_length": 666, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0f835fc40f80123c23a1033645c90c25115061a1da5025e6b751a9e3ff38a983", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47278.json", "taxon_id": "243273", "uniprot_accession": "P47278", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf237-pf03072.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03072", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf237-pf03072.yaml" } ], "pfam_ids": [ "PF03072", "PF03086" ], "protein_name": "Uncharacterized protein MPN_049", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRFRYKAFLLTLFASTTTLTGFIIPTLSQHGSSTDPSFVALRNNSSLSCDGKSRLLEFGNDLGFSKEETDVLAKQKNWEQNYTNFKKQFEHKLLDPKSFSLTDVYNLFSGFQQSVADTVKLMNELQTQVNKANDIYPVESFQVPKVPQKLFGFVDQGFFPKLNPKGLNIADNVASLFEKYSLKQATLKDFDIVLEKKNDIVLEHKVRYNFALQFHFETTYIGSGGEINLQFALQASTTNFSSLEELQASFSKVGNNLTAQLFWKPVVNKLTSGENDLTHIAQTAVGESLFDSRVDLTSSIINNEAAIKTTQQQFETEVLALFKAEREKALAEYKAEQERIAKELEEQRKELERLKKEQQNKQELVESLYNVANFVSYWEKRGKDVTDKKQLIQALKSAFATNWNEVFQLLTAGMREGIKEYYKHNKPDQSANAKKAFGQNGLAFPRTGFDGIYMSDWLRGELRNKGNINLHLKQNETTVKKIRDDISIEWNESKGGIEFHQTYPYWFEFEVNFKYIGGYSLNWWDAIWAKVAGIPGSWKGEMNLKLVIDGEIHKWMVTKPDYPRTFFQFDDQFDKLWFTLHVSQEISVRDESFMNLLKKQGLDKLDLRTGSTKPPVVDLASYLHYLILADKS", "sequence_length": 632, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "da63194ae9daee8f1d0db8dfcde54b9210010960012049c915645786a52d23ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75065.json", "taxon_id": "272634", "uniprot_accession": "P75065", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf237-pf03072.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03072", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf237-pf03072.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf240-pf03086.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03086", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf240-pf03086.yaml" } ], "pfam_ids": [ "PF03072", "PF03086" ], "protein_name": "Uncharacterized protein MPN_036", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTLHKLLLGLFLPAILGPLFGLLVTKTDAESPVAALHKSKSFSKNLDSFRALFVGEDIEEQLAKVQQQTPEVSFASFQQKFPDKASLRNGFQPIDVYNFLSGWKGALENFLAKVVELQKKIKAADDIFPNQKKNPDKKDNPNVLEVLGEYGGDGFFPTLGNNGLNIPDQVFQSFNNFQIENYKISDFKVDIASERDIVQHDKFRFSYVVNIGLELALLVNKRPVYFNFSLDLRTNNFSNQAGFNEIFNAPGNAATNWQFFSKVKVKQLNYDGNDSTHLANTLLQDQFNTLNLNLQKSIYELPLTEMETKFQQEYVELLLAKRREEKRLWDEEQKRIEAERKQKEAELARIQRELKEKAEKDAAVKQAQTNLKTALSSVEGFVKFWTEGEDRIKLGFTKEDNLYTRAGLVKALKISFANYRAWTFYITLLGWKAGSEKLLRKTSWTNLLSDVNFQNAFGLKNTASEEQVGKTSLPGYGYYGIRMSNWLRWALGYYANTHVGSPQNVKATIDGNPSDTTKVWIAPEDFKQGVHIGVGEHFKGKAYKFKFEVSFELEGSIAAHWWTLALRGNIPGYWKGKLQVTHTFDGDVPSWYYGSVHTHAPEYRFTEDNKLLFVPHSIQKITAVGGDSNGVNGLLKSQNLHNLERQSYEVTAPIDLVSYLMFAIAKEPTNNW", "sequence_length": 673, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5c343a07792cfa35376d689e9a2f84885b730b33989a61853f7cb7b0b5e3afd2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75078.json", "taxon_id": "272634", "uniprot_accession": "P75078", "uniprot_release": "2026_03" } ], "pfam_id": "PF03072", "short_name": "DUF237", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF03080", "short_name": "Neprosin", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf237-pf03072.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03072", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf237-pf03072.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf240-pf03086.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03086", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf240-pf03086.yaml" } ], "pfam_ids": [ "PF03072", "PF03086" ], "protein_name": "Uncharacterized protein MG032", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTIHKLFLGLCLPATLGPLLGIVVTNTDQSIKFTSKSNSINKNNQNKELALLRDNLMNEAKVDEPLSFEKRFENFKNKYSDIHSLNNSVFSLHDVYDLLGGFKQSLTTFFDEVIAQQQKIKDADKIFPSTKDNPPKEENPNVLDTLANYQGAGFFPSLGKNGFNLPEAVFQNFTDFRINDYKIKNFNVDLVSENDIIKHDKVRYAFEVKFNIALVLSINKSNVDFDFDFILKTDNFSDIENFNEIFNRKPALQFRFYTKINVHKLSFNGSDSTYIANILLQDQFNLLEIDLNKSIYALDLENAKERFDKEFVQPLYQKRREAKLAWEEEQRRIAEEQRRQEEERARILKELKEKAEKDKRVKEAQNNLQKALGNLDTFFNFFSSGQDRVLLGFDPNKYNVQTREGLFKALQISYSNFKTWTFYISLLGWKEGSVKLLKKPIWNALRDDKAFQYAFGLGPNTSEQQLGRVTLPGYGYEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIGDANDKKHIWISPHTFKLNREYGDGERFKGKAYRFKLSISFELEGHLTAHWWTIAFRGSIPGSWSGKLRVTHEFDGDVPYYRLHTTPPQYRLTDDMKLLFVPHSIQRVTAVGNESINGLLRSQNLHNLERQSYEATAPIDLISYMLYAISDKKPPQK", "sequence_length": 666, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0f835fc40f80123c23a1033645c90c25115061a1da5025e6b751a9e3ff38a983", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47278.json", "taxon_id": "243273", "uniprot_accession": "P47278", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf237-pf03072.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03072", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf237-pf03072.yaml" } ], "pfam_ids": [ "PF03072", "PF03086" ], "protein_name": "Uncharacterized protein MPN_049", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRFRYKAFLLTLFASTTTLTGFIIPTLSQHGSSTDPSFVALRNNSSLSCDGKSRLLEFGNDLGFSKEETDVLAKQKNWEQNYTNFKKQFEHKLLDPKSFSLTDVYNLFSGFQQSVADTVKLMNELQTQVNKANDIYPVESFQVPKVPQKLFGFVDQGFFPKLNPKGLNIADNVASLFEKYSLKQATLKDFDIVLEKKNDIVLEHKVRYNFALQFHFETTYIGSGGEINLQFALQASTTNFSSLEELQASFSKVGNNLTAQLFWKPVVNKLTSGENDLTHIAQTAVGESLFDSRVDLTSSIINNEAAIKTTQQQFETEVLALFKAEREKALAEYKAEQERIAKELEEQRKELERLKKEQQNKQELVESLYNVANFVSYWEKRGKDVTDKKQLIQALKSAFATNWNEVFQLLTAGMREGIKEYYKHNKPDQSANAKKAFGQNGLAFPRTGFDGIYMSDWLRGELRNKGNINLHLKQNETTVKKIRDDISIEWNESKGGIEFHQTYPYWFEFEVNFKYIGGYSLNWWDAIWAKVAGIPGSWKGEMNLKLVIDGEIHKWMVTKPDYPRTFFQFDDQFDKLWFTLHVSQEISVRDESFMNLLKKQGLDKLDLRTGSTKPPVVDLASYLHYLILADKS", "sequence_length": 632, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "da63194ae9daee8f1d0db8dfcde54b9210010960012049c915645786a52d23ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75065.json", "taxon_id": "272634", "uniprot_accession": "P75065", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf237-pf03072.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03072", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf237-pf03072.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf240-pf03086.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03086", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf240-pf03086.yaml" } ], "pfam_ids": [ "PF03072", "PF03086" ], "protein_name": "Uncharacterized protein MPN_036", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTLHKLLLGLFLPAILGPLFGLLVTKTDAESPVAALHKSKSFSKNLDSFRALFVGEDIEEQLAKVQQQTPEVSFASFQQKFPDKASLRNGFQPIDVYNFLSGWKGALENFLAKVVELQKKIKAADDIFPNQKKNPDKKDNPNVLEVLGEYGGDGFFPTLGNNGLNIPDQVFQSFNNFQIENYKISDFKVDIASERDIVQHDKFRFSYVVNIGLELALLVNKRPVYFNFSLDLRTNNFSNQAGFNEIFNAPGNAATNWQFFSKVKVKQLNYDGNDSTHLANTLLQDQFNTLNLNLQKSIYELPLTEMETKFQQEYVELLLAKRREEKRLWDEEQKRIEAERKQKEAELARIQRELKEKAEKDAAVKQAQTNLKTALSSVEGFVKFWTEGEDRIKLGFTKEDNLYTRAGLVKALKISFANYRAWTFYITLLGWKAGSEKLLRKTSWTNLLSDVNFQNAFGLKNTASEEQVGKTSLPGYGYYGIRMSNWLRWALGYYANTHVGSPQNVKATIDGNPSDTTKVWIAPEDFKQGVHIGVGEHFKGKAYKFKFEVSFELEGSIAAHWWTLALRGNIPGYWKGKLQVTHTFDGDVPSWYYGSVHTHAPEYRFTEDNKLLFVPHSIQKITAVGGDSNGVNGLLKSQNLHNLERQSYEVTAPIDLVSYLMFAIAKEPTNNW", "sequence_length": 673, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5c343a07792cfa35376d689e9a2f84885b730b33989a61853f7cb7b0b5e3afd2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75078.json", "taxon_id": "272634", "uniprot_accession": "P75078", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf240-pf03086.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03086", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf240-pf03086.yaml" } ], "pfam_ids": [ "PF03086" ], "protein_name": "Uncharacterized protein MPN_512", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRYSFVIQWDFETVYTGVNSTTNLAFSVKAMTTNFANLQELQDSLVLRGQNLTTQLFWKPTVKRLVLGNNNDLTTVAKAAVGDNLFTTQANLTKSVLDQTVLKEAESRFEATVLKPFIEARQKALAEHQAHQKVLEEQRQKQLEELKQKQKEAE", "sequence_length": 154, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ca58c28be63c4f4f5fb50e4f32a27f72776b5231f6fd2ea839b4b443ae7815a8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75274.json", "taxon_id": "272634", "uniprot_accession": "P75274", "uniprot_release": "2026_03" } ], "pfam_id": "PF03086", "short_name": "DUF240", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bps1-pf03087.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bps1-pf03087.yaml" } ], "pfam_ids": [ "PF03087" ], "protein_name": "Protein BPS1, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARPQDPPRGFFPFGNPFKNLSSKNSVLSSKLLPLLNNFETNLASSISKLVPKEKSDILTVSWMKQAMESLCETHNGIKTLITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTRLNQGHLLLQFALHNLEANSPQNLSKAQSSLDSWKQHIVSKNPRIENCRAILSSLVQTLNLPKVKNSAKGKVLMRALYGVKVKTLYISGVFAAAFSGSSQNLMYLTVSNELPWAQSFMEVQNTMNAEIKNIFLSDGLTVLKELEAVASGVKKLYPAIQQGSIDPISLQPLKDSVTELSNGIDLVSKEVDCFFKILLSGRDTLLENLRSMGASTLQATSPKKAAGKNYRGF", "sequence_length": 349, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e3c7ad7fc77c22a122275b816cc8a13511abe1d4e2c6f5ab909b9c668753b512", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LMM6.json", "taxon_id": "3702", "uniprot_accession": "Q9LMM6", "uniprot_release": "2026_03" } ], "pfam_id": "PF03087", "short_name": "BPS1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF03103", "short_name": "DUF243", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF03112", "short_name": "DUF244", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF03136", "short_name": "Pup_ligase", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf247-pf03140.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf247-pf03140.yaml" } ], "pfam_ids": [ "PF03140" ], "protein_name": "Putative UPF0481 protein At3g02645", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPKKPIFSSTEQHRFDETRWVINVQKSLDAELEEHDLEEVTVSIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKIRNQYNSFRFHDLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFLKIYSFRKVETLINRVGHNEILRDIMMIENQIPLFVLRKTLEFQLESTESADDLLLSVLTGLCKDLSPLVIKFDDDQILKAQFQECNHILDFLYQMIVPRIEEEELEEDDEENRADENGGNRAIRFMDEIKHQFKRVFASRPADLILRFPWRIISNLPGFMALKLSADYLFTRQENEATTTRQESVSILDIEKPPLVEELTIPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYEATNTSGPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRLTKVGFLDKTIEDVNRYYTGRWKVKIGRLVEVYVYGSWQILAFLAAVLLLMLVSLQLFSLVFSSFLRFRAG", "sequence_length": 529, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8169a8c0e83949b774fcaeb8ca463dd17dca6761209db72d0f8eeac87b0cb0c0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C897.json", "taxon_id": "3702", "uniprot_accession": "P0C897", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf247-pf03140.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf247-pf03140.yaml" } ], "pfam_ids": [ "PF03140" ], "protein_name": "UPF0481 protein At3g47200", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADKTDIISSSSDKASPPPPSAFRNYLSSGSKEPVLLLESAGKESCCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEENVLVKAVVDLEDKIRKSYSEELKTGHDLMFMMVLDGCFILMVFLIMSGNIELSEDPIFSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSDLNRIAFHFFKNPIDKEGSYWEKHRNYKAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVPSVDSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRFDGFISSFFLNCVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTISKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLTMLQSTVAILSYLNDKKGNGNAAPPPLGLP", "sequence_length": 476, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f6f1c196f3ae20dc920ebf122192f9451c581905d6448bc9748c5e97aa540560", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SD53.json", "taxon_id": "3702", "uniprot_accession": "Q9SD53", "uniprot_release": "2026_03" } ], "pfam_id": "PF03140", "short_name": "DUF247", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 10, "discovery_scanned": true, "example_count": 10, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/methyltransferase-activity-go0008168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/methyltransferase-activity-go0008168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/methyltransf-29-pf03141.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/methyltransf-29-pf03141.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:B9DFI7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03141" ], "protein_name": "Probable methyltransferase PMT2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "bbf18cd47cfc639fe1df63fc495ddef1b8eb9de297bc01864c098af45c2a6dc1", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MALKSSSADGKTRSSVQIFIVFSLCCFFYILGAWQRSGFGKGDSIALEMTNSGADCNIVPSLNFETHHAGESSLVGASEAAKVKAFEPCDGRYTDYTPCQDQRRAMTFPRDSMIYRERHCAPENEKLHCLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKAIQNWIQYEGDVFRFPGGGTQFPQGADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYLWSRNVRAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGANDGMYLMEVDRVLRPGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKKYEHGEIAIWQKRVNDEACRSRQDDPRANFCKTDDTDDVWYKKMEACITPYPETSSSDEVAGGELQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWKKHVKAYKRINSLLDTGRYRNIMDMNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTYDLIHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVDHEDGPLVPEKVLIAVKQYWVTNSTSTH", "sequence_length": 616, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "bbf18cd47cfc639fe1df63fc495ddef1b8eb9de297bc01864c098af45c2a6dc1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/B9DFI7.json", "taxon_id": "3702", "uniprot_accession": "B9DFI7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/2-1-1-ec2-1-1--.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:2.1.1.-", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/enzymatic_activity/ec/2-1-1-ec2-1-1--.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/methyltransferase-activity-go0008168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/methyltransferase-activity-go0008168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/methylation-go0032259.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/methylation-go0032259.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/methyltransf-29-pf03141.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/methyltransf-29-pf03141.yaml" } ], "pfam_ids": [ "PF03141" ], "protein_name": "Probable methyltransferase PMT25", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAMGKYSRVDGKKSSSYGLTITIVLLLSLCLVGTWMFMSSWSAPADSAGYSSTDTAKDVSKNDLRKEEGDRDPKNFSDEKNEENEAATENNQVKTDSENSAEGNQVNESSGEKTEAGEERKESDDNNGDGDGEKEKNVKEVGSESDETTQKEKTQLEESTEENKSEDGNGNEEKAEENASETEESTEKSSKEVFPAGDQAEITKESSTGDGAWSTQLVESQNEKKAQQSSISKDQSSYGWKTCNVTAGPDYIPCLDNWQAIKKLHTTMHYEHRERHCPEESPHCLVSLPDGYKRSIKWPKSREKIWYNNVPHTKLAEIKGHQNWVKMSGEHLTFPGGGTQFKNGALHYIDFIQQSHPAIAWGNRTRVILDVGCGVASFGGYLFERDVLALSFAPKDEHEAQVQFALERGIPAMLNVMGTKRLPFPGSVFDLIHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKNEEDSGIWKAMSELTKAMCWKLVTIKKDKLNEVGAAIYQKPTSNKCYNKRPQNEPPLCKDSDDQNAAWNVPLEACMHKVTEDSSKRGAVWPNMWPERVETAPEWLDSQEGVYGKPAPEDFTADQEKWKTIVSKAYLNDMGIDWSNVRNVMDMRAVYGGFAAALKDLKLWVMNVVPVDAPDTLPIIYERGLFGIYHDWCESFNTYPRTYDLLHADHLFSTLRKRCNLVSVMAEIDRILRPQGTFIIRDDMETLGEVEKMVKSMKWKVKMTQSKDNEGLLSIEKSWWRPEETETIKSAIA", "sequence_length": 770, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "39ca153c3086d12297091660f9d5157e3ab8213e528af133fc991c4a0a98df30", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q0WT31.json", "taxon_id": "3702", "uniprot_accession": "Q0WT31", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/2-1-1-ec2-1-1--.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:2.1.1.-", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/enzymatic_activity/ec/2-1-1-ec2-1-1--.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/methyltransferase-activity-go0008168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/methyltransferase-activity-go0008168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/methylation-go0032259.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/methylation-go0032259.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/methyltransf-29-pf03141.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/methyltransf-29-pf03141.yaml" } ], "pfam_ids": [ "PF03141" ], "protein_name": "Probable methyltransferase PMT24", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAMGKYSRVDGKKSSGYGLTITIVLIVSLCLVGAWMFMSSWSAPTESIDFSANERTKDVDTTKSDFKSEEVDRGSKSFPDEKNEETEVVTETNEEKTDPEKSGEENSGEKTESAEERKEFDDKNGDGDRKNGDGEKDTESESDETKQKEKTQLEESSEENKSEDSNGTEENAGESEENTEKKSEENAGETEESTEKSKDVFPAGDQAEITKESSTGSGAWSTQLVESQNEKKAQVSSIKWKVCNVTAGPDYIPCLDNWQAIRKLHSTKHYEHRERHCPEESPRCLVSLPEGYKRSIKWPKSREKIWYTNIPHTKLAEVKGHQNWVKMSGEYLTFPGGGTQFKNGALHYIDFLQESYPDIAWGNRTRVILDVGCGVASFGGYLFDRDVLALSFAPKDEHEAQVQFALERGIPAMSNVMGTKRLPFPGSVFDLIHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKTEEDVGIWKAMSKLTKAMCWELMTIKKDELNEVGAAIYQKPMSNKCYNERSQNEPPLCKDSDDQNAAWNVPLEACIHKVTEDSSKRGAVWPESWPERVETVPQWLDSQEGVYGKPAQEDFTADHERWKTIVSKSYLNGMGIDWSYVRNVMDMRAVYGGFAAALKDLKLWVMNVVPIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSSLKKRCNLVGVMAEVDRILRPQGTFIVRDDMETIGEIEKMVKSMKWNVRMTHSKDGEGLLSVQKSWWRPTEAETIQSAIA", "sequence_length": 770, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9b350801e61fe4c10c4577deb2471de216de5aa9d6cc2c592c3122568f43cf78", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NPR7.json", "taxon_id": "3702", "uniprot_accession": "Q6NPR7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/2-1-1-ec2-1-1--.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:2.1.1.-", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/enzymatic_activity/ec/2-1-1-ec2-1-1--.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/methyltransferase-activity-go0008168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/methyltransferase-activity-go0008168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/methylation-go0032259.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/methylation-go0032259.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/methyltransf-29-pf03141.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/methyltransf-29-pf03141.yaml" } ], "pfam_ids": [ "PF03141" ], "protein_name": "Probable methyltransferase PMT1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRGRSEGGKKKPVIVLLCVASVVLVFVYLFFGSSNHKAIEYGRKLGLGGDDDDSTKKDDTSSSFYVEDVVGNGFTPRSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPPGYKIPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGEKINFPGGGTHFHYGADKYIASMANMLNFPNNVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVGRMCWTIAAKRNQTVIWQKPLTNDCYLGREPGTQPPLCNSDSDPDAVYGVNMEACITQYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTDIFEKDTETWRQRVDTYWDLLSPKIQSDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDIISDIKKRGCSAEDLLLEMDRILRPSGFILIRDKQSVVDLVKKYLKALHWEAVETKTASESDQDSDNVILIVQKKLWLTSESLRDLE", "sequence_length": 611, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "72cd8ae0b2663738941556889dbd06af104b3798516a04f90a6150333e4c8460", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8H118.json", "taxon_id": "3702", "uniprot_accession": "Q8H118", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/2-1-1-ec2-1-1--.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:2.1.1.-", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/enzymatic_activity/ec/2-1-1-ec2-1-1--.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/methyltransferase-activity-go0008168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/methyltransferase-activity-go0008168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/methylation-go0032259.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/methylation-go0032259.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/s-adenosylmethionine-dependent-methyltransferases-sam-or-adomet-mtase--cd02440.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd02440", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/s-adenosylmethionine-dependent-methyltransferases-sam-or-adomet-mtase--cd02440.yaml" } ], "pfam_ids": [ "PF03141" ], "protein_name": "Probable methyltransferase PMT26", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQPRYTRIDNRRPSSNYCSTVTVVVFVALCLVGIWMMTSSSVGPAQNVDEVSLDNKDGIKKQMTPPAEEGNGQKFEDAPVETPNEDKKGDGDASLPKEDESSSKQDNQEEKKEEKTKEEFTPSSETKSETEGGEDQKDDSKSENGGGGDLDEKKDLKDNSDEENPDTNEKQTKPETEDNELGEDGENQKQFESDNGEKKSIDDDKKSSDDDKENKTGNEDTETKTEKENTETNVDVQVEQEGQSKNETSGDLSPPGAQLELLNETTAQNGSFSTQATESKNEKEAQKGSGDKLDYKWALCNTTAGPDYIPCLDNVQAIRSLPSTKHYEHRERHCPDSPPTCLVPLPDGYKRPIEWPKSREKIWYTNVPHTKLAEYKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQESVPAIAWGKRSRVVLDVGCGVASFGGFLFDRDVITMSLAPKDEHEAQVQFALERGIPAISAVMGTTRLPFPGRVFDIVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQKKTEDVEIWKAMSELIKKMCWELVSINKDTINGVGVATYRKPTSNECYKNRSEPVPPICADSDDPNASWKVPLQACMHTAPEDKTQRGSQWPEQWPARLEKAPFWLSSSQTGVYGKAAPEDFSADYEHWKRVVTKSYLNGLGINWASVRNVMDMRAVYGGFAAALRDLKVWVMNVVPIDSPDTLAIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKLKQRCNLTAVIAEVDRVLRPEGKLIVRDDAETIQQVEGMVKAMKWEVRMTYSKEKEGLLSVQKSIWRPSEVETLTYAIG", "sequence_length": 829, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "64e367bee98db3eda776d9794ec60ee4cb015c5c6e7b7a1ccd3525db12acfa7d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8L7V3.json", "taxon_id": "3702", "uniprot_accession": "Q8L7V3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/2-1-1-ec2-1-1--.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:2.1.1.-", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/enzymatic_activity/ec/2-1-1-ec2-1-1--.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/methyltransferase-activity-go0008168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/methyltransferase-activity-go0008168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/methylation-go0032259.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/methylation-go0032259.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/methyltransf-29-pf03141.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/methyltransf-29-pf03141.yaml" } ], "pfam_ids": [ "PF03141" ], "protein_name": "Probable methyltransferase PMT9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKHFRTERVRATPKLFTYVLVGFIALLGLTCLYYGSSFAPGSRKSDEFDGSNNRVRTGIGSLRNRDIVLAVSRFEVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHYEHHCPPSERRFNCLVPPPVGYKIPLRWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVPWPRRLTAPPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALNDKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTFTETQARGCSFEDLLIEMDRILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPKGDPLSTKDEIVLIARKKLWSLPAISVS", "sequence_length": 612, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5286fa283f8ca2ee7fc6270153cb2dc4f903e9a71745f25b8d8fe28ecd259cc6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VZV7.json", "taxon_id": "3702", "uniprot_accession": "Q8VZV7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/2-1-1-ec2-1-1--.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:2.1.1.-", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/enzymatic_activity/ec/2-1-1-ec2-1-1--.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/golgi-trans-cisterna-go0000138.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000138", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/golgi-trans-cisterna-go0000138.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/s-adenosylmethionine-dependent-methyltransferase-activity-go0008757.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/s-adenosylmethionine-dependent-methyltransferase-activity-go0008757.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cell-wall-biogenesis-go0042546.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042546", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cell-wall-biogenesis-go0042546.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cell-wall-pectin-metabolic-process-go0052546.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0052546", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cell-wall-pectin-metabolic-process-go0052546.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/methylation-go0032259.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/methylation-go0032259.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/pectin-biosynthetic-process-go0045489.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0045489", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/pectin-biosynthetic-process-go0045489.yaml" } ], "pfam_ids": [ "PF03141" ], "protein_name": "Probable pectin methyltransferase QUA3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGHVNLPASKRGNPRQWRLLDIVTAAFFGIVLLFFILLFTPLGDSMAASGRQTLLLSTASDPRQRQRLVTLVEAGQHLQPIEYCPAEAVAHMPCEDPRRNSQLSREMNFYRERHCPLPEETPLCLIPPPSGYKIPVPWPESLHKIWHANMPYNKIADRKGHQGWMKREGEYFTFPGGGTMFPGGAGQYIEKLAQYIPLNGGTLRTALDMGCGVASFGGTLLSQGILALSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFPAYSFDLMHCSRCLIPFTAYNATYFIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGDSCLPSQNEFGLELCDESVPPSDAWYFKLKRCVTRPSSVKGEHALGTISKWPERLTKVPSRAIVMKNGLDVFEADARRWARRVAYYRDSLNLKLKSPTVRNVMDMNAFFGGFAATLASDPVWVMNVIPARKPLTLDVIYDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIKRQDSSKSRCSLVDLMVEMDRILRPEGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPESHGREKILIATKSLWKLPSNSH", "sequence_length": 600, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b13746edb530ffd82dcf56d6282571881de8c7e3323a96b2f077342b7ee3600d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q93W95.json", "taxon_id": "3702", "uniprot_accession": "Q93W95", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/methyltransf-29-pf03141.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/methyltransf-29-pf03141.yaml" } ], "pfam_ids": [ "PF03141" ], "protein_name": "Probable methyltransferase PMT3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKGRSDGGQKKRVIALVCVAAVVLVFVYLFYGSSDHRASAIEYGRKLGLGGDDDDTKQDDTSSSFGVDDGFTPRSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNGYKVPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKYIASMANMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFALERGIPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGTQPPLCRSDNDPDAVWGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTGMFEKDTELWRQRVDTYWDLLSPRIESDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDIISDIKKKGCSEVDLLLEMDRILRPSGFIIIRDKQRVVDFVKKYLKALHWEEVGTKTDSDSDQDSDNVVFIVQKKLWLTSESLRDME", "sequence_length": 608, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b9a273c1ff7651792780e49d185d577dfadeef51813f6f97e4ae480fa8789709", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q93YV7.json", "taxon_id": "3702", "uniprot_accession": "Q93YV7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/2-1-1-ec2-1-1--.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:2.1.1.-", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/enzymatic_activity/ec/2-1-1-ec2-1-1--.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/methyltransferase-activity-go0008168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/methyltransferase-activity-go0008168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/methylation-go0032259.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/methylation-go0032259.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/methyltransf-29-pf03141.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/methyltransf-29-pf03141.yaml" } ], "pfam_ids": [ "PF03141" ], "protein_name": "Probable methyltransferase PMT14", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSKHNPPGNNRSRSTLSLLVVVGLCCFFYLLGAWQKSGFGKGDSIAMEITKQAQCTDIVTDLDFEPHHNTVKIPHKADPKPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMIYRERHCPPDNEKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFPGGGTMFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNHEAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTANEGTYLMEVDRVLRPGGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKKYEKGDIAIFRKKINDRSCDRSTPVDTCKRKDTDDVWYKEIETCVTPFPKVSNEEEVAGGKLKKFPERLFAVPPSISKGLINGVDEESYQEDINLWKKRVTGYKRINRLIGSTRYRNVMDMNAGLGGFAAALESPKSWVMNVIPTINKNTLSVVYERGLIGIYHDWCEGFSTYPRTYDFIHASGVFSLYQHSCKLEDILLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTKLMDHEDGPLVPEKILVATKQYWVAGDDGNNSPSSSNSEEE", "sequence_length": 621, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9da86fcbb62867ad24ebeb51a41b510ef7dced64c192db2ff8731b27bb416db", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q94EJ6.json", "taxon_id": "3702", "uniprot_accession": "Q94EJ6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/2-1-1-ec2-1-1--.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:2.1.1.-", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/enzymatic_activity/ec/2-1-1-ec2-1-1--.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/golgi-trans-cisterna-go0000138.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000138", "section": "canonical_examples", "url": 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"MAEVHRRQHARVKGEAPAKSSTLRDEEELGMASAETLTVFLKLLAAGFYGVSSFLIVVVNKSVLTNYRFPSSLCVGLGQMVATVAVLWVGKALRVVKFPDLDRNVPRKTFPLPLLYFGNQITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVLLKKTFSWGIKMTVFAMIIGAFVAASSDLAFDLEGYAFILINDVLTAANGAYVKQKLDSKELGKYGLLYYNALFMILPTLAIAYFTGDAQKAVEFEGWADTLFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVGCIKNILITYIGMVFGGDYIFTWTNFIGLNISIAGSLVYSYITFTEEQLSKQSEANNKLDIKGKGAV", "sequence_length": 355, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "283af85aa45cd8685c8958bcb051f2e05cac9cdd127072a0dc55368c5d1c6fe9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NTN3.json", "taxon_id": "9606", "uniprot_accession": "Q9NTN3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"MEKPESEKKSAVSDVGAWAMNVISSVGIIMANKQLMSSSGFGFGFATTLTGFHFAFTALVGMVSNATGLSASKHVPLWELLWFSIVANISIAAMNFSLMLNSVGFYQISKLSMIPVVCVLEWILHSKHYCKEVKASVMVVVIGVGICTVTDVKVNAKGFICACTAVFSTSLQQISIGSLQKKYSVGSFELLSKTAPIQAISLLICGPFVDYLLSGKFISTYQMTYGAIFCILLSCALAVFCNISQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSEMTFKNIAGMAIAIVGMVIYSWAVDIEKQRNAKSTPHGKHSMTEDEIKLLKEGVEHIDLKDVELGDTKP", "sequence_length": 347, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bdc95eb4c441859379562de6d2781f7530af9d796b600d9eea9c6a351fb5f43e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SRE4.json", "taxon_id": "3702", "uniprot_accession": "Q9SRE4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/gdp-fucose-import-into-golgi-lumen-go0036085.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0036085", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/gdp-fucose-import-into-golgi-lumen-go0036085.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/gdp-fucose-transmembrane-transport-go0015783.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015783", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/gdp-fucose-transmembrane-transport-go0015783.yaml" } ], "pfam_ids": [ "PF03151" ], "protein_name": "GDP-fucose transporter, Golgi", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYKNLEEHNRLVNKYLKIFFVVSLYWCTSILTVFVNKHLLSSDTVNLGAPLFMSWFQCVVSTVICFVASRLSRKYPSVFTFPEGNPLDIDTFRKILPLSVLYTLMIGANNLSLSYVTVAFYYIGRSLTTVFSVVLTYVILRQRTSFKCLLCCGAIVVGFWLGVDQESLTEVFSWRGTIFGVLSSLALAMFSIQTKKSLGYVNQEVWLLSYYNNLYSTLLFLPLIIINGELESIITYPHLWASWFWAAMTLSGLCGFAIGFVTALEIKVTSALTHNISGTAKACAQTVIATQYYHDVRSALWWTSNVVVLVASAAYTRVKQLEMMRQHQQRSTATQKA", "sequence_length": 337, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "387463653bee003ff0956d11b8161292d053bb1ad91a8828ebab4c018a40cc45", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VHT4.json", "taxon_id": "7227", "uniprot_accession": "Q9VHT4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/chloroplast-membrane-go0031969.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/chloroplast-membrane-go0031969.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/phosphoglycerate-transmembrane-transporter-activity-go0015120.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015120", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/phosphoglycerate-transmembrane-transporter-activity-go0015120.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/triose-phosphate-transmembrane-transporter-activity-go0071917.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071917", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/triose-phosphate-transmembrane-transporter-activity-go0071917.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/phosphoglycerate-transmembrane-transport-go0015713.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015713", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/phosphoglycerate-transmembrane-transport-go0015713.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/photosynthetic-acclimation-go0009643.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009643", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/photosynthetic-acclimation-go0009643.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/triose-phosphate-transmembrane-transport-go0035436.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0035436", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/triose-phosphate-transmembrane-transport-go0035436.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/triose-phosphate-transport-go0015717.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/triose-phosphate-transport-go0015717.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/tpt-phosphate-phosphoenolpyruvate-translocator-tigr00817.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00817", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/tpt-phosphate-phosphoenolpyruvate-translocator-tigr00817.yaml" } ], "pfam_ids": [ "PF03151" ], "protein_name": "Triose phosphate/phosphate translocator TPT, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESRVLLRATANVVGIPKLRRPIGAIHRQFSTASSSSFSVKPIGGIGEGANLISGRQLRPILLLDSSAINGGEKREILKPVKAAAAEGGDTAGDAKVGFLAKYPWLVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLISWSVGLPKRAPIDSNLLKVLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFIMGQSIPITLWLSLAPVVLGVAMASLTELSFNWLGFISAMISNISFTYRSIFSKKAMTDMDSTNVYAYISIIALFVCIPPAIIVEGPKLLNHGFADAIAKVGMTKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISTQTGIGTGIAIAGVAMYSIIKAKIEEEKRQGKKA", "sequence_length": 410, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "91af11d57ce5172440a731ab4c1125f5a6aa7f6edcc71ffa1db509cab880f9f3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZSR7.json", "taxon_id": "3702", "uniprot_accession": "Q9ZSR7", "uniprot_release": "2026_03" } ], "pfam_id": "PF03151", "short_name": "TPT", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf249-pf03158.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03158", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf249-pf03158.yaml" } ], "pfam_ids": [ "PF03158" ], "protein_name": "Protein MGF 505-7R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFSLQDLCRKNTFFLPNGFNKHTLQLLGLYWKEHGSVHRVEKDNIMIQNELVLSINDALLLAGEEGDTDVVQLLLLWEGNLHYAIIGALKTEKYNLICEYHSQIEDWHILLPMIQDPETFEKCHDLSLQCDFICLLQHAIKYNKLSILVKYKEDLLNIRIRHRVQSLFVLACENRRTEIIEWIGQNLSIPEPDAIFSIAIATKDLELFSLGYKIIFDYMQRQGILQLSNGLRMVVLNRHISMAIDNGLLPFVLETLKHGGNIHRALSYAVSHNRRKILDYLIRQKNIPPNTIERLLYLAVKNQSSRKTLNLLLSYINYKVKNVKKLVEHVVDHNSTLVVTILLEKKINLIDAVLTRLVKHSTYFRVREFIQEFSISPEKFIKIAVREKRNVIIKGISEDIWENPAERITYLKQIVHTIKYESGREFLINIIHTIYQSYSLKPEEILKLARFYVKHNATTHFKDLCKYLWLNRGTESKKLFLECLEIADKKDFPAIKNIVSEYINYLFTAGAITKEEIMQVYTLEYAMY", "sequence_length": 528, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f91f0c09d18b17cfe0cbb8e0ce0751156ca8df7922370e86d9443276e9127f44", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C9U3.json", "taxon_id": "10500", "uniprot_accession": "P0C9U3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "African swine fever virus (isolate Warthog/Namibia/Wart80/1980)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf249-pf03158.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03158", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf249-pf03158.yaml" } ], "pfam_ids": [ "PF03158" ], "protein_name": "Protein MGF 505-7R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFSLQDLCRKNTFFLPSDFSKHTLHLLGLYWKGHGSIQRIKNDGVLIEHDLLLSINEALILAGEEGNNDVVQLLLLWEGNLHYAIIGALRTEKYGLICEYHSQIQDWHVLLPLIQDPETFEKCHDLSLECDLSCLLQHAVKYNMLSILVKYKEDLLNVLFRQQIQGLFILACENRKLEILTWMGQNLPIPDPEPIFNIAVVTKDLEMFSLGYKIVFEYMENQGLFHLTQVVRMVMINRHFSMVINKGLLPFVLEILKHGGHVNRALSYAVTQNKRKILDHVVRQKNVPHKTIERMLHLAVKKHAPRKTLNLLLSYINYKVKNVKKLLEHVVKYNSTLVIRILLEKKKNLLDATLTRYVKDSTYFRVKEFMQDFSISPEKFIKIAVREQKNVLIKAICEDIWENPAERIRNLKQIVCTIKYESGRQFLINIIHTIYQSYSLKPEEILKLATFYVKHNATTHFKDLCKYLWLNRGTESKKLFLECLEIADKKEFPDIKSIVSEYINYLFTAGAITKEEIMRVYALEYAMY", "sequence_length": 528, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f3be9472683d155ee13c8a4b7011fba811e0a854ac44245c1f672238be0d1817", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C9U5.json", "taxon_id": "561444", "uniprot_accession": "P0C9U5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "African swine fever virus (strain Badajoz 1971 Vero-adapted)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf249-pf03158.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03158", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf249-pf03158.yaml" } ], "pfam_ids": [ "PF03158" ], "protein_name": "Protein MGF 505-5R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFSLQEICRKNIYFLPDWLSEHVIQRLGLYWEKHGSLQRIGDDYVLIQQDLIIPINEALRMAGEEGNDEVVQLLLLWEGNIHYAIIGALESDHYSLIRKLYDQIEDCHDILPLIQDPKIFEKCHELDKFCNILCLVLHAVKNDMLCILQEYKMHLSGEDIQVVFETACRSQKNDIVSWMGQNIAIYNSGVIFDIAFDKMNVSLLSIGYTLLFNHHINNTNENINSLLTQHLEWAAGMGLLHFMLETLKYGGDVTIIVLSEAVKYDHRKILDYFLRRKNLYQEDLEELLLLAIRADCSKKTLNLLLSYLNYSINNIRKKILQCVKEYETTVIIKILWKRKINLIEPILADFIGYHSYTYMVDFMREFSIHPEKMIKMAARESREDLIIKFSKKVCKEPKDRLHYLKSLVYTMRHKEGKQLLIYTIHNLYKACHLESKEMFNLARFYARHNAVIQFKSICHDLSKLNINIKNLLLECLGIAIKKNYFQLIKTIETDMRYE", "sequence_length": 498, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3f1725ce216214a648cd3162d1d728d72e26df6ba397773dc9f3b3f3e3ed247e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q89777.json", "taxon_id": "10498", "uniprot_accession": "Q89777", "uniprot_release": "2026_03" } ], "pfam_id": "PF03158", "short_name": "DUF249", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 9, "discovery_scanned": true, "example_count": 9, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P22147", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03159", "PF17846", "PF18129", "PF18332", "PF18334" ], "protein_name": "5'-3' exoribonuclease 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8d54cff9393cf991aa812d703cc618836ed11678fe91f3a32ccfc0bbf992f8e4", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGIPKFFRYISERWPMILQLIEGTQIPEFDNLYLDMNSILHNCTHGNDDDVTKRLTEEEVFAKICTYIDHLFQTIKPKKIFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALKKAIENGDEIPKGEPFDSNSITPGTEFMAKLTKNLQYFIHDKISNDSKWREVQIIFSGHEVPGEGEHKIMNFIRHLKSQKDFNQNTRHCIYGLDADLIMLGLSTHGPHFALLREEVTFGRRNSEKKSLEHQNFYLLHLSLLREYMELEFKEIADEMQFEYNFERILDDFILVMFVIGNDFLPNLPDLHLNKGAFPVLLQTFKEALLHTDGYINEHGKINLKRLGVWLNYLSQFELLNFEKDDIDVEWFNKQLENISLEGERKRQRVGKKLLVKQQKKLIGSIKPWLMEQLQEKLSPDLPDEEIPTLELPKDLDMKDHLEFLKEFAFDLGLFITHSKSKGSYSLKMDLDSINPDETEEEFQNRVNSIRKTIKKYQNAIIVEDKEELETEKTIYNERFERWKHEYYHDKLKFTTDSEEKVRDLAKDYVEGLQWVLYYYYRGCPSWSWYYPHHYAPRISDLAKGLDQDIEFDLSKPFTPFQQLMAVLPERSKNLIPPAFRPLMYDEQSPIHDFYPAEVQLDKNGKTADWEAVVLISFVDEKRLIEAMQPYLRKLSPEEKTRNQFGKDLIYSFNPQVDNLYKSPLGGIFSDIEHNHCVEKEYITIPLDSSEIRYGLLPNAKLGAEMLAGFPTLLSLPFTSSLEYNETMVFQQPSKQQSMVLQITDIYKTNNVTLEDFSKRHLNKVIYTRWPYLRESKLVSLTDGKTIYEYQESNDKKKFGFITKPAETQDKKLFNSLKNSMLRMYAKQKAVKIGPMEAIATVFPVTGLVRDSDGGYIKTFSPTPDYYPLQLVVESVVNEDERYKERGPIPIEEEFPLNSKVIFLGDYAYGGETTIDGYSSDRRLKITVEKKFLDSEPTIGKERLQMDHQAVKYYPSYIVSKNMHLHPLFLSKITSKFMITDATGKHINVGIPVKFEARHQKVLGYARRNPRGWEYSNLTLNLLKEYRQTFPDFFFRLSKVGNDIPVLEDLFPDTSTKDAMNLLDGIKQWLKYVSSKFIAVSLESDSLTKTSIAAVEDHIMKYAANIEGHERKQLAKVPREAVLNPRSSFALLRSQKFDLGDRVVYIQDSGKVPIFSKGTVVGYTTLSSSLSIQVLFDHEIVAGNNFGGRLRTNRGLGLDASFLLNITNRQFIYHSKASKKALEKKKQSNNRNNNTKTAHKTPSKQQSEEKLRKERAHDLLNFIKKDTNEKNSESVDNKSMGSQKDSKPAKKVLLKRPAQKSSENVQVDLANFEKAPLDNPTVAGSIFNAVANQYSDGIGSNLNIPTPPHPMNVVGGPIPGANDVADVGLPYNIPPGFMTHPNGLHPLHPHQMPYPNMNGMSIPPPAPHGFGQPISFPPPPPMTNVSDQGSRIVVNEKESQDLKKFINGKQHSNGSTIGGETKNSRKGEIKPSSGTNSTECQSPKSQSNAADRDNKKDEST", 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"NOT_ASSESSED", "record_id": "GO:0052848", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/inositol-3-5-bisdiphosphate-2-3-4-6-tetrakisphosphate-5-diphosphatase-activity-go0052848.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/inositol-5-diphosphate-1-3-4-6-tetrakisphosphate-diphosphatase-activity-go0106211.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0106211", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/inositol-5-diphosphate-1-3-4-6-tetrakisphosphate-diphosphatase-activity-go0106211.yaml" }, { 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"canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/y-phosphatase2-pf03162.yaml" } ], "pfam_ids": [ "PF03162" ], "protein_name": "Inositol diphosphatase DSP1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLVEKTTTTEQDNGEDFCRTIIEVSEVNRNVFQAPGGEADPFRVVSGEELHLIPPLNFSMVDNGIFRSGFPDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQRFAAAKARVSDQRFMEIFDVSSFSHIPMSFSCSIR", "sequence_length": 215, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1ff6518c8367ef168f5f3d13503e05616e6836bbb6f4e178d431ca19897d2ec9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZVN4.json", "taxon_id": "3702", "uniprot_accession": "Q9ZVN4", "uniprot_release": "2026_03" } ], "pfam_id": "PF03162", "short_name": "Y_phosphatase2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/otopetrin-pf03189.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03189", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/otopetrin-pf03189.yaml" } ], "pfam_ids": [ "PF03189" ], "protein_name": "Proton channel OtopLc", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSSPDLSLKLRRGSSDSRDNFYMDFAQGIDSDIEEVDNTANNQEAGEVPPPPLPTVSLAEEVLLLVAPPPPPPSLLGQPLPTLTETDDIPPTPTPPPQQKDDEGDDEDEREEPVPEQDQGAPAAPSPPGSPINSVLELELIPPPPLSPMDDAGLRTDDDGEGEETDDAEEVAAIPPPHEMLDIESNPDEEEEEEEQEQASQEDTPKEEDEEEDDDKSTPPPPLPPLPSNFSYVQGHNLGQVTPPLTKSPSNSPSPPVTPPPCPELNISRMVSPPAQHISQIPPLTPSDESEGEAESQPNSPPLRLDAEQPPPDMDQPEPEDQPPEPENEPEPEPEPEPEPEPVSGAREDYSRSLDNEDESTTITTPPSNGYSASSIIAPPPEHFAELDEDRGFIPPPPLEQEPEEEVEEEEEEEEEELTKETDEISVDRESLQDQGGDSISSPRPASILTGSISTSVGGGAGGSPKPESRGPSRSGSQRSQLRSGSQQGSIAESRGGSRIGSRTGSVASAQAAGVLSPQASLKSQTSIRSQGQAGVRSPAGSIKSGSQRMQSPQAGEGAPAMPSPPLMRSPPPELARQMHSPPRITTPPRVCSPPLVSSPPKLAESAAAAVGVAATVKEQIGSSSSTAEPLEPSKPEPLKPPIATVSYQDEQKPSPPPTAAAAPAVTTTAATTAVTSQPRSHFTSSHHHYHLPHQFQHPHHQNHHTHSVRVPTPTVPSSYAPPPPPDSGSSSSPVDRRRLFMAGVAPPIAAGAGSLMAMPAEPAVAISPGRVSARSGSQHHVTIDESSLPSHKGNIQETPGPSGLIIGGGDGDGDRDIGGGGGPDSSDPPSSPGGSSSQPALSGSQADGQLALMYHSHQLTNYPVLPAIKRTHRPSFVYPPMPRVKAGDALATLFSALYGKLLVVMGIAFPMAEVISTYIPPSFYEVYYLYLYIGSMIFLLFMYATLIWGRPKLPVPIASPSKSATKASGTDSMDESDTDSNSVHHRLPPPIPVRRPSLLSPLGRRDAHYGSFYLRMGAVAFGIGSMIYSGLEFGQYFELNPDTKCHNVLLALTPATRMAFIFIQMYFIFLNNEQIKVYRYKIIARFGLMHMIGTNLAVWLNVLIQETKHEILTFYNPENRTLRISHRIPGHSRGHAIIQHDPTAHLRVPRGLKGPYQIFECRRTNIIGTLVQDASPFLFPCTIEYSLICAAILYVMWRSISRPQTPTPQRPDMISSPMKRSPHHYSVDCARAHKGLFVGILILVLTIISLIIFFVLISRPEFVAMAVTEVTICELLIYGTATIATLVGMIQIRHLQYDAYRSFSLDDILLVGAQTGSFLYNIFTVIAGHFTLRSDDMLVPINALASIVQTACQTMFILDASRRQAVSPEHLRKKPGREIVTFMLVVNLAMWAISTLEKSRAESHPIQLNFYGLWAWTIITHVSMPLAIFYRFHSTVCLCEIWKRAYKLKPTYMXEFARSRIQSIAQQQQFCEDLKTNLSYCYCSTTLAGGELETVEEVDSGESNSAEDAGAGAGSGGSRGSGGGAGAAEAGEAGEEGQQGGDSSCGLKAPIRALSPQSLNTEKAFCPVYVINGE", "sequence_length": 1576, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "85bb61b183988d0ab8372c3bcca87db0eef03a662d3cdc1a548d763a640e5230", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/B7Z0W9.json", "taxon_id": "7227", "uniprot_accession": "B7Z0W9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/otolith-formation-go0032475.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032475", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/otolith-formation-go0032475.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/otolith-mineralization-go0045299.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0045299", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/otolith-mineralization-go0045299.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/otopetrin-pf03189.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF03189", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/otopetrin-pf03189.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q7RTM1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03189" ], "protein_name": "Proton channel OTOP1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "fb8120bb0e185f4760a2ed6bdcde1360763212458e8348e2a736df55cb0ffb54", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLEGLGSPASPRAAASASVAGSSGPAACSPPSSSAPRSPESPAPRRGGVRASVPQKLAEMLSSQYGLIVFVAGLLLLLAWAVHAAGVSKSDLLCFLTALMLLQLLWMLWYVGRSSAHRRLFRLKDTHAGAGWLRGSITLFAVITVILGCLKIGYFIGFSECLSATEGVFPVTHSVHTLLQVYFLWGHAKDIIQSFKTLERFGVIHSVFTNLLLWANGVLNESKHQLNEHKERLITLGFGNITTVLDDHTPQCNCTPPTLCTAISHGIYYLYPFNIEYQILASTMLYVLWKNIGRKVDSHQHQKMQFKSDGVMVGAVLGLTVLAATIAVVVVYLIHIGRSKTKSESALIMFYLYAITLLMLMGAAGLAGIRIYRIDEKSLDESKNPARKLDSDLLVGTASGSWLISWGSILAILCAEGHPRYTWYNLPYSILAIVEKYIQNLFIFESIHREPEKLSEDIQTLRVVTVCNGNTMPLASSCPKSGGVARDVAPQGKDMPPAANGNVCMRESHDKEEEKQEESSWGGSPSPVRLPRFLQGNAKRKVLRNIAAFLFLCNISLWIPPAFGCRPEYDNGLEEIVFGFEPWIIVVNLAMPFSIFYRMHAAASLFEVYCKI", "sequence_length": 612, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "fb8120bb0e185f4760a2ed6bdcde1360763212458e8348e2a736df55cb0ffb54", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7RTM1.json", "taxon_id": "9606", "uniprot_accession": "Q7RTM1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/otopetrin-pf03189.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03189", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/otopetrin-pf03189.yaml" } ], "pfam_ids": [ "PF03189" ], "protein_name": "Proton channel OTOP3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGRGARAAAAQSRWGRASRASVSPGRTIRSAPAVGEAQETEAAPEKENRVDVGAEERAAATRPRQKSWLVRHFSLLLRRDRQAQKAGQLFSGLLALNVVFLGGAFICSMIFNKVAVTLGDVWILLATLKVLSLLWLLYYVASTTRRPHAVLYQDPHAGPLWVRGSLVLFGSCTFCLNIFRVGYDVSHIRCKSQLDLVFSVIEMVFIGVQTWVLWKHCKDCVRVQTNFTRCGLMLTLATNLLLWVLAVTNDSMHREIEAELGILMEKSTGNETNTCLCLNATACEAFRRGFLMLYPFSTEYCLICCAVLFVMWKNVGRHVAPHMGAHPATAPFHLHGAIFGPLLGLLVLLAGVCVFVLFQIEASGPAIACQYFTLYYAFYVAVLPTMSLACLAGTAIHGLEERELDTVKNPTRSLDVVLLMGAALGQMGIAYFSIVAIVAKRPHELLNRLILAYSLLLILQHIAQNLFIIEGLHRRPLWETVPEGLAGKQEAEPPRRGSLLELGQGLQRASLAYIHSYSHLNWKRRALKEISLFLILCNITLWMMPAFGIHPEFENGLEKDFYGYQIWFAIVNFGLPLGVFYRMHSVGGLVEVYLGA", "sequence_length": 596, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9cf16e6e93b728d143818ccdc9fb3effa61b725903a81b570d50d05b706ee38", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7RTS5.json", "taxon_id": "9606", "uniprot_accession": "Q7RTS5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/otopetrin-pf03189.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03189", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/otopetrin-pf03189.yaml" } ], "pfam_ids": [ "PF03189" ], "protein_name": "Proton channel OTOP2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEELAQGPKESPPAPRAGPREVWKKGGRLLSVLLAVNVLLLACTLISGGAFNKVAVYDTDVFALLTAMMLLATLWILFYLLRTVRCPCAVPYRDAHAGPIWLRGGLVLFGICTLIMDVFKTGYYSSFFECQSAIKILHPLIQAVFVIIQTYFLWVSAKDCVHVHLDLTWCGLMFTLTTNLAIWMAAVVDESVHQSHSYSSSHSNASHARLISDQHADNPVGGDSCLCSTAVCQIFQQGYFYLYPFNIEYSLFASTMLYVMWKNVGRFLASTPGHSHTPTPVSLFRETFFAGPVLGLLLFVVGLAVFIIYEVQVSGDGSRTRQALVIYYSFNIVCLGLTTLVSLSGSIIYRFDRRAMDHHKNPTRTLDVALLMGAALGQYAISYYSIVAVVAGTPQDLLAGLNLTHALLMIAQHTFQNMFIIESLHRGPPGAEPHSTHPKEPCQDLTFTNLDALHTLSACPPNPGLVSPSPSDQREAVAIVSTPRSQWRRQCLKDISLFLLLCNVILWIMPAFGARPHFSNTVEVDFYGYSLWAVIVNICLPFGIFYRMHAVSSLLEVYVLS", "sequence_length": 562, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "67034ef8b504b6d079f20b22e4c81724f4267042902a0c6102c7b6037e7fe990", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q7RTS6.json", "taxon_id": "9606", "uniprot_accession": "Q7RTS6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/otopetrin-pf03189.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03189", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/otopetrin-pf03189.yaml" } ], "pfam_ids": [ "PF03189" ], "protein_name": "Proton channel OTOP2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03189", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/otopetrin-pf03189.yaml" } ], "pfam_ids": [ "PF03189" ], "protein_name": "Proton channel OTOP1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGGPGAPSSPAASSGSSRAAPSGIAACPLSPPPLARGSPQASGPRRGASVPQKLAETLSSQYGLNVFVAGLLFLLAWAVHATGVGKSDLLCVLTALMLLQLLWMLWYVGRSYMQRRLIRPKDTHAGARWLRGSITLFAFITVVLGCLKVAYFIGFSECLSATEGVFPVTHAVHTLLQVYFLWGHAKDIIMSFKTLERFGVIHSVFTNLLLWANSVLNESKHQLNEHKERLITLGFGNITIVLDDHTPQCNCTPPALCSALSHGIYYLYPFNIEYQILASTMLYVLWKNIGRRVDSSQHQKMQCRFDGVLVGSVLGLTVLAATIAVVVVYMIHIGRSKSKSESALIMFYLYAITVLLLMGAAGLVGSWIYRVDEKSLDESKNPARKLDVDLLVATGSGSWLLSWGSILAIACAETRPPYTWYNLPYSVLVIVEKYVQNIFIIESVHLEPEGVPEDVRTLRVVTVCSSEAAALAASTLGSQGMAQDGSPAVNGNLCLQQRCGKEDQESGWEGATGTTRCLDFLQGGMKRRLLRNITAFLFLCNISLWIPPAFGCRPEYDNGLEEIVFGFEPWIIVVNLAMPFSIFYRMHAAAALFEVYCKI", 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"ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/probable-gtpase-engc-domain-3-1-10-40-50.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.40.50", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/probable-gtpase-engc-domain-3-1-10-40-50.yaml" } ], "pfam_ids": [ "PF03193" ], "protein_name": "Small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRAKHIGKNYSSSLSPVLSPEHKPSLLESQAIGTVATAQANFMRVIVQDVANSVTSDDDNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRGMIENVFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKTELISEEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLINVLRSNHGGGVVEDENWFEPMLGNKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYLADTPGFNQPSLLKVTKHSLAHCFPEIRNMIESEKCGFRDCLHIGEPGCVVKGDWERYPYYLQLLDEIRIREEFQLRTFGTKREDDVRYKVGDMGVKHAEPRLMPKKHRRESRKKTKQTMISELDEFEDEDSDLYIENDPIVQAIENENKRQ", "sequence_length": 433, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ccc781c29833060ec61990e75ccaf806b28da689491e824507f234b8b160cd47", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4V399.json", "taxon_id": "3702", "uniprot_accession": "Q4V399", "uniprot_release": "2026_03" } ], "pfam_id": "PF03193", "short_name": "RsgA_GTPase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/luc7-pf03194.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03194", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/luc7-pf03194.yaml" } ], "pfam_ids": [ "PF03194" ], "protein_name": "Luc7-like protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEEPDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKESDTKNEVNGTSEDIKSEGDTQSN", "sequence_length": 432, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5530dfddc3cb5d3205aae2565081136e9ee1bff4b088f200d46066d40a32b1b0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O95232.json", "taxon_id": "9606", "uniprot_accession": "O95232", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/luc7-pf03194.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03194", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/luc7-pf03194.yaml" } ], "pfam_ids": [ "PF03194" ], "protein_name": "Protein LUC7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTMSTPAAEQRKLVEQLMGRDFSFRHNRYSHQKRDLGLHDPKICKSYLVGECPYDLFQGTKQSLGKCPQMHLTKHKIQYEREVKQGKTFPEFEREYLAILSRFVNECNGQISVALQNLKHTAEERMKIQQVTEELDVLDVRIGLMGQEIDSLIRADEVSMGMLQSVKLQELISKRKEVAKRVRNITENVGQSAQQKLQVCEVCGAYLSRLDTDRRLADHFLGKIHLGYVKMREDYDRLMKNNRTTNASKTATTLPGRRFV", "sequence_length": 261, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bd2e448c471bb48179426f72dad1e234aa1780517cc6c7efc106499aa156805c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q07508.json", "taxon_id": "559292", "uniprot_accession": "Q07508", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/luc7-pf03194.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03194", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/luc7-pf03194.yaml" } ], "pfam_ids": [ "PF03194" ], "protein_name": "Luc7-like protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEEPDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRDRRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKKGSDDKKSSVKSSSREKQSEDTNPESKESDTKNEVNGTSEDIKSEGDTQSN", "sequence_length": 432, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "de0ac2d612eb3d6c7f10cb9e17b008e8422dd3674d332bb4ea5ac7bfde948086", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5SUF2.json", "taxon_id": "10090", "uniprot_accession": "Q5SUF2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/luc7-pf03194.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03194", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/luc7-pf03194.yaml" } ], "pfam_ids": [ "PF03194" ], "protein_name": "Putative RNA-binding protein Luc7-like 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAQAQMRAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVSKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRNQERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKRHRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSSKERFRDQDLASRDRDRSSRDRSPRDRDRKDKKRSYESANGRSEDRRSSEEREAGEI", "sequence_length": 392, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9f9273b3a977883319905f3e26012deeb2f26d21bbdb04372848f0106086b297", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7TNC4.json", "taxon_id": "10090", "uniprot_accession": "Q7TNC4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/luc7-pf03194.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03194", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/luc7-pf03194.yaml" } ], "pfam_ids": [ "PF03194" ], "protein_name": "Putative RNA-binding protein Luc7-like 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLGRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKFSRSRSRDRYRRHRSRSRSHSRGHRRASRDRSTKYKFSRERSLREESWEYGRNERGPTDWRLENSNGKTASRRSEEKEAGEI", "sequence_length": 371, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1105091db020de34ef6f80e546fd0b2d1aa7bbccc5961cbe9342dacc1106b955", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CYI4.json", "taxon_id": "10090", "uniprot_accession": "Q9CYI4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/luc7-pf03194.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03194", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/luc7-pf03194.yaml" } ], "pfam_ids": [ "PF03194" ], "protein_name": "Putative RNA-binding protein Luc7-like 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRSERGPPDWRLESSNGKMASRRSEEKEAGEI", "sequence_length": 371, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "43d0caa50c739ed21bd6b7a3e334d669159cca7aa6bbe4a9d31e549c8138cfc0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NQ29.json", "taxon_id": "9606", "uniprot_accession": "Q9NQ29", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/luc7-pf03194.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03194", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/luc7-pf03194.yaml" } ], "pfam_ids": [ "PF03194" ], "protein_name": "Putative RNA-binding protein Alsin2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAPSNKMSATDQMRAMLDQLMGTTRNGDERQLKFSDPRVCKSFLLDCCPHDILASTRMDLGECPKVHDLAFRADYESAAKTRDYYYDIEAMEHLQAFIADCDRRTDSAKQRLKETQEELTAEVAEKANAVHGLAEEIGKKLAKAEALGEAGEVEDSMELMKEIEELRAKKIKAEHEYRTSMPASTYQQQKLRVCEVCSAYLGIHDNDIRLADHFGGKLHLGFLTIREKLIELEKTAAPRKAELKRTGKMTDREDEGRGRNRYFVGGRELDRRSRVHRSRSRERQRNRDGDRERPNNGRGPEEKGSERPKEAADGPERAERAPDRGGRRDDRDNHGRDHRERERDGRRDRDRHGRNDRGRFGDRGGGGGGGGHHRDDRRRSRSRERSPRERRNFNHFRDGGGGGNGQRKRSYSRERNYRR", "sequence_length": 420, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e810967e27f141815e882e2e3b24917be3902598e21532d90a98dac8bbb49e90", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VVI1.json", "taxon_id": "7227", "uniprot_accession": "Q9VVI1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/luc7-pf03194.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03194", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/luc7-pf03194.yaml" } ], "pfam_ids": [ "PF03194" ], "protein_name": "Putative RNA-binding protein Luc7-like 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAQAQMRAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRNQERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKRHRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSSKERFRDQDLASCDRDRSSRDRSPRDRDRKDKKRSYESANGRSEDRRSSEEREAGEI", "sequence_length": 392, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4888fdd8250c46df273491f16f70c9da7cc0d172b32119269915247ef9685660", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y383.json", "taxon_id": "9606", "uniprot_accession": "Q9Y383", "uniprot_release": "2026_03" } ], "pfam_id": "PF03194", "short_name": "LUC7", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 10, "discovery_scanned": true, "example_count": 10, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/adaxial-abaxial-axis-specification-go0009943.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009943", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/adaxial-abaxial-axis-specification-go0009943.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/petal-development-go0048441.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0048441", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/petal-development-go0048441.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/specification-of-symmetry-go0009799.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009799", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/specification-of-symmetry-go0009799.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/lateral-organ-boundaries-lob-ipr004883.yaml", "qualification_status": 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"545be73b1d5d5d1afce1ac038b0b02208e10664fa2faaac1c9cb181f53772f8d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9STS6.json", "taxon_id": "3702", "uniprot_accession": "Q9STS6", "uniprot_release": "2026_03" } ], "pfam_id": "PF03195", "short_name": "LOB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF03196", "short_name": "DUF261", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"uniprot_release": "2026_03" } ], "pfam_id": "PF03235", "short_name": "GmrSD_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/terminase-6n-pf03237.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/terminase-6n-pf03237.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"data/traits/sequence/domain/cdd/reca-like-domain-of-the-nucleoside-triphosphatase-thep1-family-this-fa-cd19482.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd19482", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/reca-like-domain-of-the-nucleoside-triphosphatase-thep1-family-this-fa-cd19482.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ntpase-1-pf03266.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ntpase-1-pf03266.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRIFITGMPGVGKTTLALKIAEKLKELGYKVGGFITKEIRDGGKRVGFKIITLDTNEETILAYVGDGKIKVGKYAVFIENLDNVGVEAIKRALKDADIIIIDELGAMEFKSRKFSEVVDEVIKSDKPLLATLHRNWVNKFKDKGELYTLTIENREKLFEEILNKILAGLK", "sequence_length": 170, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "5e45c1180be34abfcf2796d688d01eef51d6e79fdc412ea86708c9569ee08cc6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q58954.json", "taxon_id": "243232", "uniprot_accession": "Q58954", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"MEDVEIKPRGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFMCNTVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQTYVALSSLSVVIIDECHHGTGHHPFREFMRLFTIANQTKLPRVVGLTGVLIKGNEITNVATKLKELEITYRGNIITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLISAEIEKFYVSLDLMNIGVQPIRRSKSLQCLRDPSKKSFVKQLFNDFLYQMKEYGIYAASIAIISLIVEFDIKRRQAETLSVKLMHRTALTLCEKIRHLLVQKLQDMTYDDDDDNVNTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYIQSTPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDVQACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEPELYEIKGHFQDDIDPFTNENGAVLLPNNALAILHRYCQTIPTDAFGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRDTIYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVPKTLKERVASIADVHFEHWNKYGDSVTATVNKADKSKDRTYKTECPLEFYDALPRVGEICYAYEIFLEPQFESCEYTEHMYLNLQTPRNYAILLRNKLPRLAEMPLFSNQGKLHVRVANAPLEVIIQNSEQLELLHQFHGMVFRDILKIWHPFFVLDRRSKENSYLVVPLILGAGEQKCFDWELMTNFRRLPQSHGSNVQQREQQPAPRPEDFEGKIVTQWYANYDKPMLVTKVHRELTPLSYMEKNQQDKTYYEFTMSKYGNRIGDVVHKDKFMIEVRDLTEQLTFYVHNRGKFNAKSKAKMKVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLLHAEALRKRFNTYLNLHLLPFNGTDYMPRPLEIDYSLKRNVDPLGNVIPTEDIEEPKSLLEPMPTKSIEASVANLEITEFENPWQKYMEPVDLSRNLLSTYPVELDYYYHFSVGNVCEMNEMDFEDKEYWAKNQFHMPTGNIYGNRTPAKTNANVPALMPSKPTVRGKVKPLLILQKTVSKEHITPAEQGEFLAAITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLLFCLIDADIPKTLNTIQFTPRYTWLPPGISLPHNVLALWRENPEFAKIIGPHNLRDLALGDEESLVKGNCSDINYNRFVEGCRANGQSFYAGADFSSEVNFCVGLVTIPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICRADIDKPLTQLLNLELGGKKMRANVNTTEIDGFLINHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRILLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQLVEHKHAKPVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSKCDA", "sequence_length": 1722, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "9cc88c9d01852cecd1b84dbdd51ccda23d31fbd15238e7a7f166af9b77d2f3a8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1ZAW0.json", "taxon_id": "7227", "uniprot_accession": "A1ZAW0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsrm-dcl2-pf26980.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26980", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsrm-dcl2-pf26980.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF00636", "PF03368", "PF26980" ], "protein_name": "Dicer-like protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSQDESASSSDTGEGGHVFGRENLNQSADYGYKTGSSASTHSTTDDAISEEPQPSGNGPRSIIARAYQLEMFQASMQQNIIVSMDTGSGKTQVAVLRIRAELERTPPEKRVWFLAPTVALCAQQYEVIRSQIKVANSIVMTGDDNVDSWSDVQTWDAVLANVRVVVCTYMILFEALSHAFVTMDSISLLVMDEAHNCTGKFPGRLIMKRFYMPRKSAGDHVPHILGLTASPVMKSDLSSMEDLESSLDSVCRGPTLQREELFANVHQPTMTVTTYKECDLRSPVQYTRNMNNLHLAFENLDIAEDPYVLHLMGQRTPKSLRELDRILTKLDTYTQNQMKALQRKSSSLFRELGQWAVDSYIYNVVEKVSNLDARSSWLGGWLDDEQRYLHRAIQGINALPVSAAIPAPEMTSIKLQVLLRILRGYEGSPVGIVFVKERATAGILSQLLAIIPDINARYKVGCMVGTSRYMSRKMNIHEVLQQGDDLLALEKFRSGAINLLVATSVLEEGIDVPVCNLVICFDMPANLKSFIQRRGRARMRESKLHLMIEEDSLVSVKDWGALEAAMKQRYENDMRELDHLAQVEEEDEMDVPPLHSRTTAAKVTVDDAKGHLEHFCRVVTRSQQYVDASPEYLVTTKTTAFVGGKPIPILGVTVLLPASLPPNLRQAHSSRDWISERNAKKDAALQAYKMLYEAGLINEHLLPIRESDFVDREVDGRPGLLEVQEQWNPWPCIVEAWETGLSSQTIHRRRLQLTDQDGMLMGELDALLPVPFPPISILKLYWIQHSEHPWTISFDPDVTMSGPGSTDPSFEIQQALDQTQILLDMAFGHRFSVSEQSKALRFIWPNRTLKLQMIGGQPFSKKAGEAHSSDYIIRSYGRDPYIYKSWVPVKPPLELVRGYWKAKPDEEEPPADAPWVVVKRLPKNCGFVKNSRIPIELPKEYQTSSPRRFDYIIPEQLCTFDTVPATLVQLGMLVPSITQAMEPYFVAQELLRRTALGSLDFKDIDLVMMVITSSSAGRLTNYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKDRLVSNSRLCKAATALGLDQFIITRQYSLKQWRNMLTAPEPPTNTRKMSSKTLADVTEALIGAAYIEGGMSKALRCISLMIPNERWRSLDESRAVLYQVALNDIPLPSTLGPLEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPAPIEHYNMHLLRTAVVNGEFLGFLAMEWRTAATQRSVVVRTGQGTADELETVETPGLPLFGFLRHNASGDWVRDQQLAEERHAEMAPGIRDALEHGQRYPWDLLARLRISKVHSDVLEAVIGAVWVDSGSLEECEKLIERVGILRYLDRALRDGVKILHPKEELGRVAQNNKVVYKVDKAKRAARAEVYEVSGELAEGEDVEFLCSVTVGDRCVARVGGAVSKNDAMTKAALEVIRVWEEAGRSWDNVGVVLEEGV", "sequence_length": 1485, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "293e1a1bf23c59a101e5cf239ca9eba9f51d054daee6c9ba029454b6c24d82c5", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/A4RHU9.json", "taxon_id": "242507", "uniprot_accession": "A4RHU9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dicer-dimer-pf03368.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03368", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dicer-dimer-pf03368.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/rnase-3-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00517", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/rnase-3-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P34529", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00271", "PF00636", "PF02170", "PF03368", "PF04851", "PF20930", "PF20931", "PF20932" ], "protein_name": "Endoribonuclease dcr-1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c81a3f19dac8f6398e093fd7e89b046d643129b4da0f9957d8a26b89693ba89b", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVRVRADLQCFNPRDYQVELLDKATKKNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQGGKRAFFVVEKVNLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVITAQCLLDLIRHAYLKIEDMCVLIFDECHHALGSQHPYRSIMVDYKLLKKDKPVPRVLGLTASLIKAKVAPEKLMEQLKKLESAMDSVIETASDLVSLSKYGAKPYEVVIICKDFEIGCLGIPNFDTVIEIFDETVAFVNTTTEFHPDLDLDPRRPIKDSLKTTRAVFRQLGPWAAWRTAQVWEKELGKIIKSQVLPDKTLRFLNMAKTSMITIKRLLEPEMKKIKSIEALRPYVPQRVIRLFEILETFNPEFQKERMKLEKAEHLSAIIFVDQRYIAYSLLLMMRHIKSWEPKFKFVNPDYVVGASGRNLASSDSQGLHKRQTEVLRRFHRNEINCLIATSVLEEGVDVKQCNLVIKFDRPLDMRSYVQSKGRARRAGSRYVITVEEKDTAACDSDLKDFQQIEKILLSRHRTVNNPIEDDSDRFEEFDVDSQMEPYVVEKTGATLKMSTAIALINRYCSKLPSDIFTRLVPHNQIIPIEENGVTKYCAELLLPINSPIKHAIVLKNPMPNKKTAQMAVALEACRQLHLEGELDDNLLPKGRESIAKLLEHIDEEPDEYAPGIAAKVGSSKRKQLYDKKIARALNESFVEADKECFIYAFELERFREAELTLNPKRRKFEDPFNYEYCFGFLSAKEIPKIPPFPVFLRQGNMKVRLIVAPKKTTVTAAQLQEIQLFHNYLFTQVLQMCKTGNLEFDGTSNAPLNTLIVPLNKRKDDMSYTINMKYVSEVVANMENMPRIPKDEVRRQYKFNAEDYKDAIVMPWYRNLEQPVFYYVAEILPEWRPSSKFPDTHFETFNEYFIKKYKLEIYDQNQSLLDVDFTSTRLNLLQPRIQNQPRRSRTVSNSSTSNIPQASASDSKESNTSVPHSSQRQILVPELMDIHPISATLWNVIAALPSIFYRVNQLLLTDELRETILVKAFGKEKTKLDDNVEWNSLAYATEYEEKQTIIVKKIQQLRDLNQKSIEDQERETRENDKIDDGEELFNIGVWDPEEAVRIGVEISSRDDRMDGEDQDTVGLTQGLHDGNISDEDDELPFVMHDYTARLTSNRNGIGAWSGSESIVPSGWGDWDGPEPDNSPMPFQILGGPGGLNVQALMADVGRVFDPSTASSSLSQTVQESTVSPPKQLTKEEEQFKKLQNDLLKQAKERLEALEMSEDMEKPRRLEDTVNLEDYGDDQENQEDENTPTNFPKTIDEEIEELSIGARKKQEIDDNAAKTDVLERENCEVLPVAINEKSRSFSFEKESKAINGRLIRQRSEEYVSHIDSDIGLGVSPCLLLTALTTSNAADGMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCNLYRLGKKLGIPQLIVANKFDAHDSWLPPCYIPTCDFKAPNTDDAEEKDNEIERILDGQVIEEKPENKTGWDIGGDVSKSTTDGIETITFPKQARVGNDDISPLPYNLLTQQHISDKSIADAVEALIGVHLLTLGPNPTLKVMNWMGLKVIQKDQKSDVPSPLLRFIDTPTNPNASLNFLNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDTNFNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRGTIELCCANPPRSPIRELMEFEQSKVRFSKMERILESGKVRVTVEVVNNMRFTGMGRNYRIAKATAAKRALKYLHQIEQQRRQSPSLTTV", "sequence_length": 1910, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c81a3f19dac8f6398e093fd7e89b046d643129b4da0f9957d8a26b89693ba89b", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P34529.json", "taxon_id": "6239", "uniprot_accession": "P34529", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P84634", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00270", "PF00271", "PF00636", "PF03368", "PF14709" ], "protein_name": "Dicer-like protein 4", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "80e31fc907f2dc714263271fbd6b84a2cfc08a2be17b8d03ca17a9f8a9494153", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRDEVDLSLTIPSKLLGKRDREQKNCEEEKNKNKKAKKQQKDPILLHTSAATHKFLPPPLTMPYSEIGDDLRSLDFDHADVSSDLHLTSSSSVSSFSSSSSSLFSAAGTDDPSPKMEKDPRKIARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPKKSVCIFLAPTVALVEQQAKVIADSVNFKVAIHCGGKRIVKSHSEWEREIAANEVLVMTPQILLHNLQHCFIKMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRPRIFGMTASPVVGKGSFQSENLSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSALSDASQSTIRYENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNLIYTLLNLGLWGAIQAAKIQLNSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVAKDENASDLLSLAALKEPLFSRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRARMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLEITYRSSEETCPRLDEELYKVHETGACISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDELSDDEFDFDNIKGEGCSRGDLYEMRVPVLFKQKWDPSTSCVNLHSYYIMFVPHPADRIYKKFGFFMKSPLPVEAETMDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVLFERGELIPDFVPLELQDSSRTSKSTFYLLLPLCLHDGESVISVDWVTIRNCLSSPIFKTPSVLVEDIFPPSGSHLKLANGCWNIDDVKNSLVFTTYSKQFYFVADICHGRNGFSPVKESSTKSHVESIYKLYGVELKHPAQPLLRVKPLCHVRNLLHNRMQTNLEPQELDEYFIEIPPELSHLKIKGLSKDIGSSLSLLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLEALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYIRDQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEIRCSKGHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQDACIASRRYLPLTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSYKWDREISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMITNLKAHENITTSHPLEDVLKNGIRNEAKLIGYNEDPIDVVDLVGLDVENLNILETFGGNSERSSSYVIRRGLPQAPSKTEDRLPQKAIIKAGGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLECYGEARATKKGAAEHAAQAAIWCLKHSGFLC", "sequence_length": 1702, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "80e31fc907f2dc714263271fbd6b84a2cfc08a2be17b8d03ca17a9f8a9494153", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P84634.json", "taxon_id": "3702", "uniprot_accession": "P84634", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dcr1-like-dsrna-bd-dom-pf22389.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22389", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dcr1-like-dsrna-bd-dom-pf22389.yaml" } ], "pfam_ids": [ "PF00271", "PF00636", "PF03368", "PF04851", "PF22389" ], "protein_name": "Protein Dicer", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDISSFLLPQLLRKYQQDVYNIASKQNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFLVNKVPLVFQQAEYIRSQLPAKVGMFYGELSIEMSEQLLTNIILKYNVIVITADLFYLFLARGFLSINDLNLIIFDECHHAIGNDAYARIMNDFYHRAKAVLSKKHFTLPRIFGMTASPFTGKKGNLYHRLYQWEQLFDSKAHVVSENELADYFCLPEESYVMYSNKLVVPPSDSIIKKCEETLQGCKLISRAVKTALAETIDMGLWFGEQVWLYLVDFVETKRLKKKALGKQLSDDEELAIDRLKIFVEDWKNNKYSDNGPRIPVFDSTDVTDKVFKLLELLKATYRKSDSVRTVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPSDQGEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMASKFLIFLNTEELLIHERILHEEKNLKFALSELSNSNIFDSLVCEERERVTDDIVYEVGETGALLTGLYAVSLLYNFCNTLSRDVYTRYYPTFTAQPCLSGWYCFEVELPKACKVPAAQGSPAKSIRKAKQNAAFIMCLDLIRMGLIDKHLKPLDFRRKIADLETLEEDELKDEGYIETYERYVPKSWMKVPEDITRCFVSLLYTDANEGDNHIFHPLVFVQAHSFPKIDSFILNSTVGPRVKIVLETIEDSFKIDSHLLELLKKSTRYLLQFGLSTSLEQQIPTPYWLAPLNLSCTDYRFLENLIDVDTIQNFFKLPEPVQNVTDLQSDTVLLVNPQSIYEQYAFEGFVNSEFMIPAKKKDKAPSALCKKLPLRLNYSLWGNRAKSIPKSQQVRSFYINDLYILPVSRHLKNSALLIPSILYHIENLLVASSFIEHFRLDCKIDTACQALTSAESQLNFDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYALSTPLEIRHWCPYGFQKSTSDKCRYAVLQKLSVKRIADMVEASIGACLLDSGLDSALKICKSLSVGLLDISNWDEWNNYFDLNTYADSLRNVQFPYSSYIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPNATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASENPWFWFEIDSPKFISDTLEAMICAIFLDSGFSLQSLQFVLPLFLNSLGDATHTKAKGDIEHKVYQLLKDQGCEDFGTKCVIEEVKSSHKTLLNTELHLTKYYGFSFFRHGNIVAYGKSRKVANAKYIMKQRLLKLLEDKSNLLLYSCNCKFSKKKPSDEQIKGDGKVKSLT", "sequence_length": 1374, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "45ebd54cb58b74918fbd3a101ad16954dcf9638560a85b05dd701645064f4871", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q09884.json", "taxon_id": "284812", "uniprot_accession": "Q09884", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsrm-dcl2-pf26980.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26980", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsrm-dcl2-pf26980.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF00636", "PF03368", "PF26980" ], "protein_name": "Dicer-like protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADSHDAPFRLRSYQAEMVEESMQSNIICVMDTGSGKTHIAIDRTRAELEICRPDKIVWFLAPTVTLCEQQFAVFKSNLPGYGIQLLSGKDNLDHWTDQGVWDDVLLNIRIVLSTHQVLLDALSHGFVKMRNLSLLIFDEAHHCSLKHPAHRIMSDFYKPRIGTELPRILGLSASPIKTAKVTSEDLQQIERNLCATVKTPKLHRSELLRYVHRPHLMRIDYPVEPQDLQSNMLSFLKSAYTNYDLQKDPWVSELLQQRQQGHDVTKNIHKVFIGGKTYCRDQLRSLALKAEAMSQELGMSVMDWYLRGCITQFSKMVHMSDSQLLDWSADEKRHLLEILRTLPSIDLNSHDIPPMSLGSMSHKLQLLIKFLVAEAKHDPEFTCLVFVEQRVWVACIAEVLAIHPETRDLLRVGTFVGESENSKRKANIASISEPRNQQATLENFRAGKLNLILATSVLEEGIDVSSCHLVVCFESPKNLKSFVQRRGRARKEESKYVIFVPQAGRRRDPESWQSLEEGMKAAYLDDLRQVKLATEKEQQSETGHRNFEVKSTGALLTLDNASQHLHHFCSILGAGPYIDNRPQFEFTEIRPGVITARVILPLTVDPEVRTACALDTWATEKMAKQDAAFEAYKALYVAGLVNDNLLPARQEADDELSELQIPDHRPSLVPVSPTLDPWPLFARHQQQNPHVYYRTRLTLHTVDDKPKHLILLTPKILPDIPELLLYWNSSTKLKIESSWLHDVVLNDEEISELKSVTYKILYSVFHNRMELNRRDFVWLVAPCDESGLLDSRIWLSEWRQHTCLATELIAQNSDWSLWGLVNQKGDARKYTPRSTSMNNQLWLLQLMQLPKRRDFLHPVLESANINDAYTKTDEMAAKDCIVDPVPAPYSVFALLLPSILHRFGMAIIAETLRTTLLGPVALDSAHSLLLTRALKSSAADGNDNYQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSNGFLARATIAAGLDRFMITKSFTGAKWAPRYAGDLLAETGPAVKEERSSKLIADIIESLIGACYTVGGFEKAVLCVQTLLPLEPWISVPAANSILHEAAPAEADLMGLDVLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLDYIISKRLHAHSPELSHQKMHAIRTATVNASFLAFRLFETTIDEETINKTSMRPESQKRAIWQFLRSGSPSLNANRDNALRQHEQVRDEIIIGLNEAARFPWHLFALTDPPKFLSDMVESVIGAVYIDSLGDILTCEAIVRRLGILDCLDHILCNGVDCLHPKERLGHLAVDKGVQYARVGMNTEPNEGDKMYKCQVKVGGEDVGDVAEGLKRLNAETVAAWKAVGVLESRKDSAIEIVSDVEEFFDADDGGGISLDDP", "sequence_length": 1399, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f54fb542ae21d15d82fd8bcddbda7da5886143e88c1aefceaf7cb497d55e831b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q0UL22.json", "taxon_id": "321614", "uniprot_accession": "Q0UL22", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cryphonectria parasitica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsrm-dcl2-pf26980.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26980", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsrm-dcl2-pf26980.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF00636", "PF03368", "PF26980" ], "protein_name": "Dicer-like protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYYTDSSSSESEDFEDVINQVVAEEDITGAAWYDGHLSEEDSPGGKPRPKEQLPKDIVKMDARAYQLEMLEASLKENIICAMDTGSGKTHVAILRIKAELEEMPEGQVVWFLTPTVSLCAQQYAVVKAQIPSVQTKIVTGADKVDSWSSTTWDGALLNVKVIITTPQVLLDALLHGFVNISSLALMVFDEAHHCNKNHAYSRVMKEFYWESKTKHEPVPRILGLTASPVVRSDISSLKRLESTLDAVCRSPTRHREELIANSQRPALFSIIYNPKLQPYAAGFSESLTKLMAARNKLNILEDPYVVSLRAEISDRSRRKLEKAIKEKRTYVQDTMKSFCRRSMEMAKELGAWAADWFISEAIRLFLAGIYRQGASSKSFRDAEVIFLARVFQDANIEPPPPLTTHSGLSEKVQRIIEVLLNYDKDARAICFVKERATTVVLSHILTTHPEVSSKFRIGTMVGTSFVPGVKRDFLDLPETGGSQCLEAFREGRKNMLVATSVLEEGIDVPACNLIICFDKPNNLRAFIQRRGRARMRQSHLYLFVEDEAEADWEALEAQMKLQYEDEKREHERLEAIENSEALDYPEELRVESTGARLTINDAKSHLQHFVSTLASRKFVQTQPDYLIEKVSQGYQPGDQPLLKATVLLPVSVPQALRQVTSSRTWVSEKNACMDAAFQAYKALYEAGLVDDHLLPLRDRLELELEVRPGMREVRGLYNPWLSIAAACTQGDVPLCRRALKVSDGNNSELCEFELAIPVALPEMKPMVVWWDHRAQLTLRIDSDAVMADTDVRHADQTTINQQDHTSVLLSLAYGHRNMTIRDDCILRLVSKSGPLSMEQLGQVEFAPGLVTANGSSYLVRDERDQSRHPYYFESVLPSKPPAESIRKVYRGFDEDPTEATYLSVRKWPKKTGFFHRPCSPQHSPSTKPYAYILPAETTTVDRIPLVYAQMGLLMPSLVCYTELYLVAAELSRKVLAPLRISNVSMLVEAICAKSARTPENYERIEFLGDSILKTCITVNLAATKLHLPEGILSLMKDRLVSNARLCRAACDAELDQFLVTQQLVTKGWQPPYMSDLAKQDQEPESKRILSPKTLADVVEALIGVSFVDGGLPKALECIRLFIPESQPRPFSEVRDILFGAAEPKGMKLPADLQLLEQLIEYSFCEKALLVEAVTHPSYNVSGTVACYDRLEFIGDAILDYIIVEEVFALEPALENWQMHLLRTALVNADILGFLIMEWSYKQMGFEVCRANEGDSDSKSSGDSTSDKASPRLEQTEVPIPLWSFMRQSSAELTMEREITKARFEELRDPILEAMRSGTHYPWALFARLHAQKFYSDFFEALVGAIWVDAGPGFDACRAFVARSGVLPYLKRLLRDQVHVLHPKEELGRLAGRERVEYVVKETLKDDGDGKEWACEVRVGGRYVTDVTGCLFKEESRVKAATQACEILKRK", "sequence_length": 1451, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "644acf692326bc34cb104d73a5d896f49d1f7bc8e76dd2835c5217f036a993c0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2VF18.json", "taxon_id": "5116", "uniprot_accession": "Q2VF18", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q3EBC8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00270", "PF00271", "PF00636", "PF02170", "PF03368" ], "protein_name": "Endoribonuclease Dicer homolog 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3a0a489cf994212288843a35b3262cacecdfcd9722f4f9e2cffd7ca7cb654b30", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTMDADAMETETTDQVSASPLHFARSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYLFRKPSPCFCVFLVPQVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDALRHSFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLVKTKGENLDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRASLVEKLERLTIKHRLSLGTLDLNSSTVDSVEKRLLRISSTLTYCLDDLGILLAQKAAQSLSASQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQGLNWSVANINGNAEAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNNWKTKYVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGRARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHSLVPCPPLPDDSDEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQGSCTLYLPKSCPVKEVKAEANNKVLKQAVCLKACIQLHKVGALSDHLVPDMVVAETVSQKLEKIQYNTEQPCYFPPELVSQFSAQPETTYHFYLIRMKPNSPRNFHLNDVLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVLLDHSVENLMEALNGLHLRDGVALDYLLVPSTHSHETSLIDWEVIRSVNLTSHEVLEKHENCSTNGASRILHTKDGLFCTCVVQNALVYTPHNGYVYCTKGVLNNLNGNSLLTKRNSGDQTYIEYYEERHGIQLNFVDEPLLNGRHIFTLHSYLHMAKKKKEKEHDREFVELPPELCHVILSPISVDMIYSYTFIPSVMQRIESLLIAYNLKKSIPKVNIPTIKVLEAITTKKCEDQFHLESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPGQSSAAYSLVNDTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTTKIQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQKWQFELSKAKDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLKNSLDY", "sequence_length": 1388, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3a0a489cf994212288843a35b3262cacecdfcd9722f4f9e2cffd7ca7cb654b30", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3EBC8.json", "taxon_id": "3702", "uniprot_accession": "Q3EBC8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dicer-dsrbd-pf20932.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20932", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dicer-dsrbd-pf20932.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dicer-pbd-pf20930.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20930", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dicer-pbd-pf20930.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF00636", "PF02170", "PF03368", "PF20930", "PF20931", "PF20932" ], "protein_name": "Endoribonuclease Dicer", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKHIKHEQEELHRKFLLFTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEADTEPVVDDDDVFPPYVLRPEDGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRESYPRPGQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWKKSIDSKSFISIANSSSAENENYCKHSTIVVPENAAHQGANRTSPLENHDQMSVNCRTLFSESPGKLQIEVSTDLTAINGLSYNKSLANGSYDLANRDFCQGNHLNYYKQEIPVQPTTSYPIQNLYNYENQPKPSDECTLLSNKYLDGNANTSTSDGSPVTAAVPGTTETGEAPPDRTASEQSPSPGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNGLPPGYVVNQDKSNTEKWEKDEMTKDCMLANGKLDDDFEEEEEEEEDLMWRAHKEDADDEDDFLEYDQEHIKFIDNMLMGSGAFVKKISLSPFSATDSAYEWKMPKKSSLGSLPFSSDFEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKAMCPTRENFTSQQKNLSGSRAAASGAGYRASVLKDLEYGCLKIPPRCMFDHPEADRTLRHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPEITKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS", "sequence_length": 1923, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5825586cc37f8c7592c21d8f73f0d5cc5c502054611b55d802dd356ca3d1aea4", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6TUI4.json", "taxon_id": "9913", "uniprot_accession": "Q6TUI4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dicer-dimer-pf03368.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03368", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dicer-dimer-pf03368.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/rnase-3-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00517", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/rnase-3-1.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF00636", "PF02170", "PF03368", "PF20930", "PF20931", "PF20932" ], "protein_name": "Endoribonuclease Dicer", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGLQLVTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGKTFIAVLLIKELSHQIRGENGKRTVFLVNAASSVAQQASTVRTHSDLQVGDYMSEDMTSWPEEMWNREMIENQVLVMTCHIFLHVLKNGVLPLSKINLLVFDECHLAITGHPYREIMKICEGCPSCPRILGLTASILNGKCDPCDLEEKIQNLEKILQSNAETATDLVVLDRYASQPREEVLDCGQYQDQSGLSERLLNELDEALNFLNDCNLSVHREDRDPTFISKQVLNDCRAVLTVLGPWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKIHALCEEHFSPASLDLKFVTPKVIRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEAEAKEKTEANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIMLADSERTKTFQEDLKTYKAIEKILRNKCSKSAECNDFELEPVTDDDNVLPPYVLRSEDGGPRVTMNTAIGHVNRYCARLPSDPFTHLAPKCKTVEMNTGGYRSTLFLPINSPLRVPVTGPVMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCSPKAIPECLRGCYPVPEQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFSLSAEQLELITRLHQYIFSHILRLEKPALEFKPVEADSAYCVLPLNIVEDSNTLDLDFKFMEDIEKSEARIGIPNTQYTKQNPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQTAIDAGVGAQTLPPDFRYPNLDFGWKKSIDSKSFISCPSACMEEDDDHCKLGTSSDSNHTAPESCSMEVSQPPEGAPNTPDEKLETLTLPVTDLNKDCFPNLPNGTQADSDDLPHRSDVCQCSQLGPLERDLSTQTTTSVSVRPSPAGEPQPWPSDECTGRSSDLCDPHVKKPTSKHCPKSETATSTPAPSETSSEDCRSACAGPAWDSPKTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSSTDKWDSDENKDLANGKASDDEDEDDDDEPEEAEVEPSKEDVNVEDDLEYYYEHIRFIDSMLIGSGAFGKKISLQPTDPGYEWKAPKKAHNSHFSPDGGADEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGTDIGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPPEKQSSGGSAELQYGWLKIPPRCMFEHPDAERTLNHLISGFLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQNN", "sequence_length": 1865, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d4793e9485317a62495dd876aaf2a72a2f7b4b756850f078dc2ef1e8cf019224", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6TV19.json", "taxon_id": "7955", "uniprot_accession": "Q6TV19", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/rnase-3-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00517", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/rnase-3-1.yaml" } ], "pfam_ids": [ "PF00035", "PF00271", "PF00636", "PF02170", "PF03368", "PF04851", "PF14709" ], "protein_name": "Endoribonuclease Dicer homolog 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVMEDEPREATIKPSYWLDACEDISCDLIDDLVSEFDPSSVAVNESTDENGVINDFFGGIDHILDSIKNGGGLPNNGVSDTNSQINEVTVTPQVIAKETVKENGLQKNGGKRDEFSKEEGDKDRKRARVCSYQSERSNLSGRGHVNNSREGDRFMNRKRTRNWDEAGNNKKKRECNNYRRDGRDREVRGYWERDKVGSNELVYRSGTWEADHERDVKKVSGGNRECDVKAEENKSKPEERKEKVVEEQARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLVYQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCAYKVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEGAAAEKVAAEVGKPENGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTADFRAIVFVERVVAALVLPKVFAELPSLSFIRCASMIGHNNSQEMKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNVSHAAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREFYPEGVADVLKGEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEVSEFAILFGNELDAEVLSMSMDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPVTDNTSMEPIKGINWELVEKITKTTAWDNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHNIVFGQKSHPTYGIRGAVASFDVVRASGLLPVRDAFEKEVEEDLSKGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPLEYNTYADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLSPRFEQSGESETVLDKTYYVFLPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLISYPIPTSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKTFS", "sequence_length": 1909, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "599ba99799c83963e0ce0f2b15b3e68ea4d88125bfff79eb118328fbc59f74a5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SP32.json", "taxon_id": "3702", "uniprot_accession": "Q9SP32", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dicer-dimer-pf03368.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03368", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dicer-dimer-pf03368.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dicer-dsrbd-pf20932.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20932", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dicer-dsrbd-pf20932.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dicer-pbd-pf20930.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20930", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dicer-pbd-pf20930.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dicer-platform-pf20931.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20931", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dicer-platform-pf20931.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/rnase-3-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00517", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/rnase-3-1.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF00636", "PF02170", "PF03368", "PF20930", "PF20931", "PF20932" ], "protein_name": "Endoribonuclease Dicer", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWKKSIDSKSFISISNSSSAENDNYCKHSTIVPENAAHQGANRTSSLENHDQMSVNCRTLLSESPGKLHVEVSADLTAINGLSYNQNLANGSYDLANRDFCQGNQLNYYKQEIPVQPTTSYSIQNLYSYENQPQPSDECTLLSNKYLDGNANKSTSDGSPVMAVMPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYDQEHIRFIDNMLMGSGAFVKKISLSPFSTTDSAYEWKMPKKSSLGSMPFSSDFEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDSEYGCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS", "sequence_length": 1922, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "397304032323fa31cf03e9ce207c76b81ede79a8dedccab20ea369501e9fb62d", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UPY3.json", "taxon_id": "9606", "uniprot_accession": "Q9UPY3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dicer-dsrbd-pf20932.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20932", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dicer-dsrbd-pf20932.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dicer-pbd-pf20930.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20930", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dicer-pbd-pf20930.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dicer-platform-pf20931.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20931", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dicer-platform-pf20931.yaml" } ], "pfam_ids": [ "PF00271", "PF00636", "PF02170", "PF03368", "PF20930", "PF20931", "PF20932" ], "protein_name": "Endoribonuclease Dcr-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFHWCDNNLHTTVFTPRDFQVELLATAYERNTIICLGHRSSKEFIALKLLQELSRRARRHGRVSVYLSCEVGTSTEPCSIYTMLTHLTDLRVWQEQPDMQIPFDHCWTDYHVSILRPEGFLYLLETRELLLSSVELIVLEDCHDSAVYQRIRPLFENHIMPAPPADRPRILGLAGPLHSAGCELQQLSAMLATLEQSVLCQIETASDIVTVLRYCSRPHEYIVQCAPFEMDELSLVLADVLNTHKSFLLDHRYDPYEIYGTDQFMDELKDIPDPKVDPLNVINSLLVVLHEMGPWCTQRAAHHFYQCNEKLKVKTPHERHYLLYCLVSTALIQLYSLCEHAFHRHLGSGSDSRQTIERYSSPKVRRLLQTLRCFKPEEVHTQADGLRRMRHQVDQADFNRLSHTLESKCRMVDQMDQPPTETRALVATLEQILHTTEDRQTNRSAARVTPTPTPAHAKPKPSSGANTAQPRTRRRVYTRRHHRDHNDGSDTLCALIYCNQNHTARVLFELLAEISRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHRRQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAYHVILVAPSYKSPTVGSVQLTDRSHRYICATGDTTEADSDSDDSAMPNSSGSDPYTFGTARGTVKILNPEVFSKQPPTACDIKLQEIQDELPAAAQLDTSNSSDEAVSMSNTSPSESSTEQKSRRFQCELSSLTEPEDTSDTTAEIDTAHSLASTTKDLVHQMAQYREIEQMLLSKCANTEPPEQEQSEAERFSACLAAYRPKPHLLTGASVDLGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKHDIVGLPMPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPPEDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFTNVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDEERQAQPFDPQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPGDNYRTFKHYYLVKYGLTIQNTSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVPELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPMLDFGWSLSEVLKKSRESKQKESLKDDTINGKDLADVEKKPTSEETQLDKDSKDDKVEKSAIELIIEGEEKLQEADDFIEIGTWSNDMADDIASFNQEDDDEDDAFHLPVLPANVKFCDQQTRYGSPTFWDVSNGESGFKGPKSSQNKQGGKGKAKGPAKPTFNYYDSDNSLGSSYDDDDNAGPLNYMHHNYSSDDDDVADDIDAGRIAFTSKNEAETIETAQEVEKRQKQLSIIQATNANERQYQQTKNLLIGFNFKHEDQKEPATIRYEESIAKLKTEIESGGMLVPHDQQLVLKRSDAAEAQVAKVSMMELLKQLLPYVNEDVLAKKLGDRRELLLSDLVELNADWVARHEQETYNVMGCGDSFDNYNDHHRLNLDEKQLKLQYERIEIEPPTSTKAITSAILPAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADALGLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAAKCALRQLKKQGLIAKKD", "sequence_length": 2249, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c20e50ae1f1b77cd7802364ad384bef0756fc70042c8033b606564b5fceb7bf7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VCU9.json", "taxon_id": "7227", "uniprot_accession": "Q9VCU9", "uniprot_release": "2026_03" } ], "pfam_id": "PF03368", "short_name": "Dicer_dimer", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF03380", "short_name": "DUF282", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/aminophospholipid-flippase-activity-go0015247.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015247", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/aminophospholipid-flippase-activity-go0015247.yaml" } ], "pfam_ids": [ "PF03381" ], "protein_name": "CDC50 family protein chat-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPRDAVPTSTQVSGIGADGVQTEKVLKNRPKASALRQQKLPAWQPILTATTVIPTVFVIGAIFLPIGVFLFIASDAVSEFTVEYTNCLSPCQLQINLPNAFDGDVFLYYNLENYYQNHRRYVKSRNDQQYLGDLTNVKDCAPFDIDPATKKPIAPCGAIANSIFNDTFTLAHRADTGIVTMVPVTTQGVIWNVDKDRKFKNPPLNDGNLCDAFNNTTKPPNWSKNPCEVGGFENVDFIVWMRTAALPYFKKLWRIVDRTTNPLFSNGLPQGTYILTVENNYPVQSFGGKKEFVISTTSWAGGKNSFLGIAYLVVGSLAIVLGVVFIVIHMKFGHSMNELSNVSEIHH", "sequence_length": 348, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a89029b01e2ac326091284b0dde17fc3241f96c08d1554d6c4b5f88110920ad9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/H2L0H3.json", "taxon_id": "6239", "uniprot_accession": "H2L0H3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/cdc50p-drs2p-complex-go1990530.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990530", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/cdc50p-drs2p-complex-go1990530.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/actin-cortical-patch-localization-go0051666.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051666", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/actin-cortical-patch-localization-go0051666.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/aminophospholipid-translocation-go0140331.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140331", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/aminophospholipid-translocation-go0140331.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cdc50-pf03381.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03381", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cdc50-pf03381.yaml" } ], "pfam_ids": [ "PF03381" ], "protein_name": "Phospholipid-transporting ATPase accessory subunit CDC50", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSLFKRGKAPPLTKEGPTSKKPPNTAFRQQRLKAWQPILSPQSVLPLLIFVACIFTPIGIGLIVSATKVQDLTIDYSHCDTKASTTAFEDIPKKYIKYHFKSKVENKPQWRLTENENGEQSCELQFEIPNDIKKSIFIYYKITNFYQNHRRYVQSFDTKQILGEPIKKDDLDTSCSPIRSREDKIIYPCGLIANSMFNDTFSQVLSGIDDTEDYNLTNKHISWSIDRHRFKTTKYNASDIVPPPNWMKKYPDGYTDENLPDIHTWEEFQVWMRTAAFPKFYKLTLKNESASLPKGKYQMNIELNYPISLFGGTKSFVLTTNGAIGGRNMSLGVLYLIVAGLCALFGIIFLVKLIFQPRAMGDHTYLNFDDEENEDYEDVHAENTTLREIL", "sequence_length": 391, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b90e403940419031e30b8fb842fd834012a2310b180195a9b0f03704fbd6472f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P25656.json", "taxon_id": "559292", "uniprot_accession": "P25656", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/aminophospholipid-translocation-go0140331.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140331", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/aminophospholipid-translocation-go0140331.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-vacuole-organization-go0044088.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044088", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-vacuole-organization-go0044088.yaml" } ], "pfam_ids": [ "PF03381" ], "protein_name": "Phospholipid-transporting ATPase accessory subunit LEM3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVNFDLGQVGEVFRRKDKGAIVSGDNPEEEEDVDASEFEEDEVKPVRTKNRRPKEDAFTQQRLAAINPVLTPRTVLPLYLLIAVVFVIVGGCILAQNSKVDEVTIYYQDCMTNATSSWSDIPSEHWQFVFHKYKTYNTAPQWRFVDDESDDFTKQRGTCQIRFTTPSDMKNNVYLNYVLEKFAANHRRYVLSFSEDQIRGEDASYETVHDATGINCKPLSKNADGKIYYPCGLIANSMFNDTFPLQLTNVGDTSNNYSLTNKGINWESDKKRYKKTKYNYTQIAPPPYWEKMYPDGYNETNIPDIQDWEEFQNWMRPGAFDKITKLIRINKNDTLPAGEYQLDIGLHWPVLEFNGKKGIYLTHGSHLGGRNPFLGIVYLIGGCICAAMALILLTFWLFGGRKIADASSLSWNMK", "sequence_length": 414, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "47d5b5f32a67e848fcff9ca7753007029376df53214bda4b9fb50f25a5781118", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P42838.json", "taxon_id": "559292", "uniprot_accession": "P42838", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/aminophospholipid-flippase-activity-go0015247.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015247", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/aminophospholipid-flippase-activity-go0015247.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cdc50-pf03381.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03381", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cdc50-pf03381.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q3MIR4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03381" ], "protein_name": "Cell cycle control protein 50B", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "87b4e748f3a75e3103fb47df2feaa65c89a768626e3dafdc898e3f72696d34f0", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGIKELEYDYTGDPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQNNRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQRQPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDPNNTGFINQDFVVWMRTAALPTFRKLYARIRQGNYSAGLPRGAYRVNITYNYPVRAFGGHKLLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQDQDDDDEE", "sequence_length": 351, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "87b4e748f3a75e3103fb47df2feaa65c89a768626e3dafdc898e3f72696d34f0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3MIR4.json", "taxon_id": "9606", "uniprot_accession": "Q3MIR4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/phospholipid-translocating-atpase-complex-go1990531.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990531", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/phospholipid-translocating-atpase-complex-go1990531.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/aminophospholipid-flippase-activity-go0015247.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015247", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/aminophospholipid-flippase-activity-go0015247.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/aminophospholipid-transport-go0015917.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015917", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/aminophospholipid-transport-go0015917.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-phospholipid-translocation-go0061092.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061092", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-phospholipid-translocation-go0061092.yaml" } ], "pfam_ids": [ "PF03381" ], "protein_name": "Cell cycle control protein 50A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAMNYSAKDEVDGGPAGPPGGAAKTRRPDNTAFKQQRLPAWQPILTAGTVLPTFFIIGLIFIPIGIGIFVTSNNIREIEIDYTGTEPSSPCNKCLSPNVTSCACTINFTLKQSFEGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDPSALLNPSKECEPYRRNEDRPIAPCGAIANSMFNDTLELYLVANESDPKPIPIPLKKKGIAWWTDKNVKFRNPPGKESLEEKFKDTIKPVNWHKAVYELDPEDESNNGFINEDFIVWMRTAALPTFRKLYRLIERRDDLHPTLPAGQYFLNITYNYPVHSFDGRKRMILSTISWMGGKNPFLGIAYITIGSISFLLGVVLLVINHKYRNSSNTADITI", "sequence_length": 364, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1e827001d373bde19129131bbaf1bfbe8c96d6388c518bccba5a3a4ffd72ee93", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VEK0.json", "taxon_id": "10090", "uniprot_accession": "Q8VEK0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/serpentine-r-xa-pf03383.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03383", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/serpentine-r-xa-pf03383.yaml" } ], "pfam_ids": [ "PF03383" ], "protein_name": "Serpentine receptor class XA 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"sequence_sha256": "6f35049c78db8ee78e5a1a4fbff6616211acf357d9193df0eccf2d8b71dd4066", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M237.json", "taxon_id": "3702", "uniprot_accession": "Q9M237", "uniprot_release": "2026_03" } ], "pfam_id": "PF03384", "short_name": "DUF287", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/2-4-ec2-4----.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:2.4.-.-", "section": "canonical_examples", "url": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLVQDRAAPSPAKPPKSQIRELPTHQQIRRRFSEPKNLDFSTWFSENLSRIAVFSLLIVTIVAFFFLYNTTDTASLLCFQSQSTQFLQSLSRPQIKWNSIPVVPDKTSPYANFQTEKWIVVSVTKYPTEELKSLVKIRGWQVLAIGNSATPKDWSLKGSIFLSLDAQAELGYRVLDHLPYDSFVRKSVGYLFAIQHGAKKIYDADDRGEVIDGDLGKHFDVELVGLDSKQEPILQYSHENPNRTVVNPYIHFGQRSVWPRGLPLENVGEINHEEYYTEVFGGKQFIQQGISNGLPDVDSVFYFTRKTTLEAFDIRFDEHSPKVALPQGVMVPVNSFNTLYHSSAFWGLMLPVSVSSMASDVLRGYWGQRLLWELGGYVAVYPPTAHRFDRIEAYPFVEEKDLHVNVGRLIKFLLAWRSEKHSFFETVLDLSFAMAEEGFWTEQDLKFTAAWLQDLIAVGYQQPRLMSLELDRPRASIGHGDRKEFVPRKLPSVHLGVEETGTVSTEIGNLIRWRKNFGNVVLVMFCNGPVERTALEWRLLYGRIFKTVVILSSQKNSDLYVEEAKLDHIYKHLPKIFDRYSSAEGFLFVEDDTVLNYWNLLQADKSKIWTTDKVSKSWTSVKPTGNSDWFSVQAELVKKTVSTMPAHFQVNYKDATKNNHETLTVCSSEVFYVPKRLVTDFIDLVDLVGDMDLHYKVAVPMFFLSMDSPQNFDPVLGSMVYKRKSASFNTSSSLYSAKAPAVHPWSISSEQDFIKLVQQMAEGDPLLMELV", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/rhamnogalacturonan-ii-biosynthetic-process-go0010306.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nucleotide-diphospho-sugar-transferase-ipr005069.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005069", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nucleotide-diphospho-sugar-transferase-ipr005069.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nucleotid-trans-pf03407.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03407", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nucleotid-trans-pf03407.yaml" } ], "pfam_ids": [ "PF03407" ], "protein_name": "UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQQKFLHQRPIQNPFTNPFSSSPLSTSSISNRPISLLSRNGLLLLLALLVILGVFLPWAGSPLFPSPNKLSPSQSKWRDYSLPQAVKFVAKNGTVIVCAVSYPYLPFLNNWLISVSRQKHQDQVLVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTARRPQHLLEILELGYNVMYNDVDMVWLQDPFQYLEGKHDAYFMDDMTAIKPLDHSHDLPPPGKKGRTYICSCMIFLRPTNGAKLLMKKWIEELETQPWSRAKKANDQPGFNWALNKTANQVDMYLLSQAAFPTGGLYFKNKTWVKETKGKHAIIHNNYIVGFEKKIKRFRDFNLWLVDDHASESPLGKLE", "sequence_length": 360, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a8d5acb36299d9bf82dc3cc7290bfbe772237c3ab887bfb4d1d54d8cde89fbc3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M146.json", "taxon_id": "3702", "uniprot_accession": "Q9M146", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/rhamnogalacturonan-ii-biosynthetic-process-go0010306.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010306", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/rhamnogalacturonan-ii-biosynthetic-process-go0010306.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nucleotide-diphospho-sugar-transferase-ipr005069.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005069", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nucleotide-diphospho-sugar-transferase-ipr005069.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nucleotid-trans-pf03407.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03407", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nucleotid-trans-pf03407.yaml" } ], "pfam_ids": [ "PF03407" ], "protein_name": "UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQKQQTLHQQRPFSSSPRSYSSISNRPIFLLSRNGLLLVLLALFLLLGVFLPWPGSPLLLFPNKVSSPSYASSLSPHAKSEWRNYTLAQAAKFVATNGTVIVCAVSSPFLPFLNNWLISVSRQKHQEKVLVIAEDYITLYKVNEKWPGHAVLIPPALDSKTAYSFGSQGFFNFTARRPQHLLQILELGYNVMYNDVDMVWLQDPFQYLEGSHDAYFTDDMPQIKPLNHSHDLPAPDQNGETYICSCMIYLRPTNGAKLLMKKWSEELQSQAWSESIRFKANDQPAFNLALNKTAHQVDLYLLSQVAFPTGGLYFNDAAWVKETKGKHVIVHNNYIIGYDRKMRRFQDYGLWLVDDHALESPLGKLQ", "sequence_length": 367, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9630c2dd675226b217a73a5a1a6537996b3a5f5872688f372794d4f6de535a86", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZSJ0.json", "taxon_id": "3702", "uniprot_accession": "Q9ZSJ0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/rhamnogalacturonan-ii-biosynthetic-process-go0010306.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010306", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/rhamnogalacturonan-ii-biosynthetic-process-go0010306.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nucleotide-diphospho-sugar-transferase-ipr005069.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005069", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nucleotide-diphospho-sugar-transferase-ipr005069.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nucleotid-trans-pf03407.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03407", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nucleotid-trans-pf03407.yaml" } ], "pfam_ids": [ "PF03407" ], "protein_name": "UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEQKQHILKQSTFSSSPSSYSSISDRPISLLSRNGLLLLLLALVLLLGVLLPWPGSPLFLFPNRLSSSLSPSPQSKWRDYTLAQAARFVAKNGTVIVCAVSSPFLPFLNNWLISVSRQKHQDKVLVIAEDYITLYKVNEKWPGHAVLIPPALDSKTAFSFGSQGFFNFTARRPQHLLQILELGYNVMYNDVDMVWLQDPFLYLEGSHDAYFTDDMPQIKPLNHSHDLPHPDRNGETYICSCMIYLRPTNGAKLLMKKWSEELQSQAWSESIRFKANDQPAFNLALNKTAHQVDLYLLSQVAFPTGGLYFKNEAWVQETKGKHVIVHNNYIIGYDRKMKRFQDYGLWLVDDHALESPLGKLE", "sequence_length": 361, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "26754601136611607e5a3d02431b6974a25aa6bfdf968fae89efcabcb6c056d3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZSJ2.json", "taxon_id": "3702", "uniprot_accession": "Q9ZSJ2", "uniprot_release": "2026_03" } ], "pfam_id": "PF03407", "short_name": "Nucleotid_trans", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF03409", "short_name": "Glycoprotein", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF03434", "short_name": "DUF276", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF03436", "short_name": "DUF281", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Paenibacillus lautus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm46-pf18448.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18448", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm46-pf18448.yaml" } ], "pfam_ids": [ "PF00150", "PF03442", "PF18448" ], "protein_name": "Endoglucanase B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKRRSSKVILSLAIVVALLAAVEPNAALAAAPPSAMQSYVEAMQPGWNLGNSLDAVGADETLARGNPRITKELIQNIAAQGYKSIRIPVTWDSHIGAAPNYQIEAAYLNRVQEVVQWALDANLYVMINVHHDSWLWISKMESQHDQVLARYNAIWTQIANKFKNSPSKLMFESVNEPRFTDGGTTDEAKQQKMLDELNVSFFNIVRNSGGQNATRPLVLSTLEASPTQERMTALYNTMTKLNDKNLIATVHFYGFWPFSVNIAGYTKFDAETQNDIITTFDNVYNTFVAKGIPVVVGEYGLLGFDKNTGVIEQGEKLKFFEFFAQYVKQKSISTMLWDNGQHFNRTSFKWSDPDLFNMIKASWTGRSSTASSDLIHVKQGTAVKDTSVQLNLNGNTLTSLSVNGTTLKSGTDYTLNSSRLTFKASQLTKLTSLGKLGVNATIVTKFNRGADWKFNVVLYNTPKLSSTTGTTSSFAIPTAFNGDQLATMEAVYVNGGNAGPHNWTSFKEFETTFSPAYSEGKIKLQQAFFNEVNDTTVTLKFQFWSGEIVNYTIKKSGSTVTGTAS", "sequence_length": 566, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b0214e50471be162f0ff67169f6ab0a747a480774af80a362990fe13de28e9c6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P23550.json", "taxon_id": "1401", "uniprot_accession": "P23550", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermoclostridium stercorarium", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm-x2-pf03442.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03442", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm-x2-pf03442.yaml" } ], "pfam_ids": [ "PF00759", "PF00942", "PF03442" ], "protein_name": "Endoglucanase Z", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKFYSFAIIISLLVTGLFIHTPKAEAAGYNYGEALQKAIMFYEFQRSGKLPENKRDNWRGDSGLNDGADVGLDLTGGWYDAGDHVKFNLPMAYSQTMLAWAAYEAEEALERSGQMGYLLDAIKWVSDYLIKCHPSPNVFYYQVGDGHLDHSWWGPAEVMQMDRPAYKVDLANPGSTVVAEAAAALASAAVVFADRDPAYAATCIQHAKELYNFAEITKSDSGYTAASGFYDSHSGFYDELSWAGVWLYLATGDETYLNKAEQYVAYWGTEPQTNIISYKWAHCWDDVHYGACLLLAKITGKQIYKEAIERHLDYWSVGYNGERVHYTPKGLAWLDSWGSLRYATTTAFLASVYADWEGCSREKAAIYNDFAKQQIDYALGSSGRSYVVGFGVNPPKRPHHRTAHSSWADSMSVPDYHRHVLIGALVGGPGKDDSYTDDINNYINNEVACDYNAGFVGALAKMYEDYGGSPIPDLNAFEEITNDEFFVMAGINASGQNFIEIKALLHNQSGWPARVADKLSFRYFVDLTELIEAGYSASDVTITTNYNAGAKVTGLHPWNEAENIYYVNVDFTGTKIYPGGQSAYRKEVQFRIAAPQNTNFWNNDNDYSFRDIKGVTSGNTVKTVYIPVYDDGVLVFGVEPEGGSGENNSSISITNATFDKNPAKQENIQVVMNLNGNTLNGIKYGNTYLREGTDYTVSGDTVTILKSFLNSFDTSTVQLIFDFSAGRDPVLTVNIIDTTTSASIVPTTADFDKNPDASRDVKVKLVPNGNTLLAVKKDGEALVLGRDYSIDGDEVTIFREYLADQPVGRVTLTFDFDRGTDPVLTINITDSRQVETGVIQIQMFNGNTSDKTNGIMPRYRLTNTGTTPIRLSDVKIRYYYTIDGEKDQNFWCDWSSVGSNNITGTFVKMAEPKEGADYYLETGFTDGAGYLQPNQSIEVQNRFSKADWTDYIQTNDYSFSTNTSYGSNDRITVYISGVLVSGIEP", "sequence_length": 986, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "377f1c44b83eabc2b51242e30c7402b6a8baafdc6fe1cd5cd34f9d104720ea73", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P23659.json", "taxon_id": "1510", "uniprot_accession": "P23659", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermoclostridium stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm-x2-pf03442.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03442", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm-x2-pf03442.yaml" } ], "pfam_ids": [ "PF00942", "PF02011", "PF03442" ], "protein_name": "Exoglucanase-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRRLMKGISLLTLVFLIGIMLQLSLKSELTAYASSDDPYKQRFLELWEELHDPSNGYFSSHGIPYHAVETLIVEAPDYGHLTTSEAMSYYLWLEALYGKFTGDFSYFMKAWETIEKYMIPTEQDQPNRSMAGYNPAKPATYAPEWEEPSMYPSQLDFSAPVGIDPIYNELVSTYGTNTIYGMHWLLDVDNWYGFGRRADRISSPAYINTFQRGSQESVWETIPQPCWDDLTIGGRNGFLDLFVGDSQYSAQFKYTNAPDADARAIQATYWANQWAKEHGVNLSQYVKKASRMGDYLRYAMFDKYFRKIGDSKQAGTGYDAAHYLLSWYYAWGGGITADWAWIIGCSHVHAGYQNPMTAWILANDPEFKPESPNGANDWAKSLERQLEFYQWLQSAEGAIAGGATNSYKGRYETLPAGISTFYGMAYEEHPVYLDPGSNTWFGFQAWTMQRVAEYYYLTGDTRAEQLLDKWVDWIKSVVRLNSDGTFEIPGNLEWSGQPDTWTGTYTGNPNLHVSVVSYGTDLGAAGSLANALLYYAKTSGDDEARNLAKELLDRMWNLYRDDKGLSAPETREDYVRFFEQEVYVPQGWSGTMPNGDRIEPGVTFLDIRSKYLNDPDYPKLQQAYNEGKAPVFNYHRFWAQCDIAIANGLYSILFGSEQANDSFITPTSATFDKNNQEDISVTVTYNGNTLLGIKSGSSYLIEGVDYIVNGDVIIIKKEFLAGQATGSISLLFDFSAGLDRTLTIDIIDTGGGEEPVEPVEPVEGVLIIQSFNANTQEISNSIMPRFRIYNSGNTSIPLSEVKLRYYYTVDGDKPQNFWCDWASIGSSNVTGTFVKMDGATTGADYYLEIGFTPQAGTLEPGASIEVQGRFSKIDWTDYTQTNDYSFNPTASSYVDFNKITAYISGNLVYGIEP", "sequence_length": 914, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "045d3405c70bbdae9ce6e5fe1145a173bd78fb17640b946920e98292a5fdf6aa", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P50900.json", "taxon_id": "1121335", "uniprot_accession": "P50900", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Paenibacillus sp", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm-x2-pf03442.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03442", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm-x2-pf03442.yaml" } ], "pfam_ids": [ "PF00942", "PF03442" ], "protein_name": "Xyloglucanase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTFLGKKLWMASLAVALAAGSFAALPEMTSAAPSEPYTWKNVVTGAGGGFVPGIIFNESEKDLIYARTDIGGAYRWNPANESWIPLTDFVGWDDWNKNGVDALATDPVDPDRVYLAVGTYTNSWDKNNGAILRSTDRGDTWQTTTLPFKVGGNMPGRSMGERLVVDPNDNRILYFGARSGNGLWRSSDYGATWSKVTSFPNPGTYVQDPANEYGSDIVGLAWITFDKSSGQVGQATQTIYVGVADTAQSIYRSTDGGATWTAVPGQPTGYLPHHGVLDADGSLYITYSNGVGPYDGTKGDVWKLNTSTGAWTNISPIPSSSADNYFGYGGLAVDAQEPGTLMVATLNSWWPDAILFRSKDGGTTWTRIWEFDGYPNRKFRYTQNISAAPWLTFGTTPAPPEVSPKLGWMIGDLEIDPFDSDRMMYGTGATIYGTNNLTNWDNNEKIDISVMAKGVEEMAVLDLVSPPSGAHLVSGLGDVNGFRHDDLDQPPAKMFSSPNYASTESLDFAELNPSTMVRVGKADYAADPNAKSIGLSSDGGTNWYKANAEPAGTAGGGTVAISSDGSKLVWSTSDKGVHYSSTGGNSWTASTGIPAQAKVISDRVNPNKFYGFAAGKIYVSVNGGVSFSQTAAAGLPVDGNADLDAVPGVEGELWFAGGNEDGGPYGLWHSTDSGASFAKLSNVEEADSIGFGKAAPGRNSAALYAVAQIDGTRGFFRSDDGGASWVRINDDAHQYARVTTITGDPRIYGRVYLGTNGRGILYADPVGGNNGGETPPVSHSGISPQSTEFDLNADRQADIPVALTLNGNTLASIRNGNHVLVQGSDYTMSGSQVFLSKTYLATLSKGVQSLVFRFSAGNDATLSITVKDTTQVPLPEGSIRIEMYNGTTSATANSINPKFKLTNTGTAPLQLADVNIRYYYTIDGEKPLNFFCDWATAGSANVTGTFSALPAAVNGADHVLEIGFTASAGTLAAGQSTEVQVRFSKTDWTNFTQTDDYSFAASSTAYENWSKVTGYVSGTLQWGIEP", "sequence_length": 1027, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5697f3759b52fda030f4b61098edc6beab69e456db4465924f5d90c4194a8dc7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3MUH7.json", "taxon_id": "58172", "uniprot_accession": "Q3MUH7", "uniprot_release": "2026_03" } ], "pfam_id": "PF03442", "short_name": "CBM_X2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/two-tandem-repeats-of-the-cystathionine-beta-synthase-cbs-pair-domains-cd04588.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd04588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/two-tandem-repeats-of-the-cystathionine-beta-synthase-cbs-pair-domains-cd04588.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/winged-helix-turn-helix-transcription-repressor-hrca-dna-binding-domai-ipr005104.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005104", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/winged-helix-turn-helix-transcription-repressor-hrca-dna-binding-domai-ipr005104.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/whd-hrca-pf03444.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03444", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/whd-hrca-pf03444.yaml" } ], "pfam_ids": [ "PF00571", "PF03444" ], "protein_name": "Uncharacterized protein MJ1232", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELTVVQREILQELINLYREKNRPIKGTEIALRLNRNPGTIRNQMQALRALDLVDGVPGPKGGYVPTSKAYRALGLEDEGEIIVPIYKDGKKVEGVKVVKIEFDTVSHEKCCSSKIHIEGDTKHFNIGDIIRVGPTYHNKIIINGKIIGRDDIHRILLIDVLGVSSIPNIKVGDVGIKEVWTINPNCTLRETAKLFAEKYISGAPVVDNDKLVGVISLHDIAENIDNIDKKVKEVMRRDVITIHKDEKIYDALKIMNKNNVGRLVIVDDNNKIVGIITRTDILKIISGKFPENFHT", "sequence_length": 296, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b470ff4f3c841d5ed6a844341a40d5cb72ea9c693f9b426eba1edbbfd5f30e13", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58629.json", "taxon_id": "243232", "uniprot_accession": "Q58629", "uniprot_release": "2026_03" } ], "pfam_id": "PF03444", "short_name": "WHD_HrcA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Legionella pneumophila (strain Corby)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf294-pf03445.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03445", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf294-pf03445.yaml" } ], "pfam_ids": [ "PF01966", "PF03445", "PF08335", "PF27444", "PF27446" ], "protein_name": "Bifunctional uridylyltransferase/uridylyl-removing enzyme", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNDNRIIKNTIKQFKEKLCKDFSQKANITSITRKLAVFIDTILIQLFIKNKLHFGDNFCLLALGSYGRRELQLHSDIDLLILHTEKVSNIQLQRAQKFIQDCWDVGLEVSHQITTVSSCANLASQDLSVISTIMDMFLLCGHGALMEELIYQTHTLHMWPSHQYFFAKLQEQQNRYAKYGETAYNLEPNIKNGPGGLRDLQILLSISKRHFKIKKLAEGIGYGFITDKEYEELKYCQNFLWRVRFALHMLAGKPEERLSFDYQVKLAQFFGYQDQSHILAIEQFMKDYFKVIKRNRELNEMLLQWFNETIVYHQKQKIIRLDDEFQLSNRFIEVRNNRVFKQNPQSILKLFYWLVKRPDIEGVRASTIRLIRESLFLMGKRFRESKETANIFINIFRTGNDPYDALQRMNRYGVLAHYLDCFATATGQMQYDLFHAYTVDQHTLFVIRNISRFKKNEYAKQFPLCAKIITALEKPEILYLGALFHDIAKGRGGDHSELGAIEAQQFTQRHYMEAEDSKLIVWLVRYHLLMSQTAQRKDIYDPKTIEQFCQLLPHARYLDYLYLLTVADICGTNPTLWNAWKDSLLKELYHAAKTRLHKQQELLDEAALISIRKQYAMDILISDGISSRVIQDLWSQFKGKYFLHESPEVIARHTKAILNSKQFPVVIIMPHHSQGGTEVFIYMPHKDERFTITTSVLSNHHVTIQEAAIITCDNQFDLDTYIILDENNQAFLNEQRARDIQKNLCDHLANTGRLPAVSRRRLSRALTHFNVKTQINFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMFYISNQTGYSLNHEEKTILKEKLILEISKSKY", "sequence_length": 861, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "455a6f00f5d2e090518d286d18e7046fc146a2a10c93c71cf2883d350971f66b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5ICM0.json", "taxon_id": "400673", "uniprot_accession": "A5ICM0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Erythrobacter litoralis (strain HTCC2594)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf294-pf03445.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03445", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf294-pf03445.yaml" } ], "pfam_ids": [ "PF01966", "PF03445", "PF08335", "PF26956", "PF27444" ], "protein_name": "Bifunctional uridylyltransferase/uridylyl-removing enzyme", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDPKVPRQRRIIDRRKLAAAVEALAEQQGEKARPAVLKVLREALEKGRDELSQRLLDRPSAGHQITAGHAFLVDQLVRVIFDHVTTHLYPVANRSSSERIAVLAVGGYGRAEMAPQSDVDIAFLHPSRRTPWCEQVTEAMLYFLWDLGFKVGQSSRTPEDMVRMAREDLTIRTALLEARFVWGDRELYDEARKRFWSEVVNGTERQFVAEKLAERDARHERMGGTRYVVEPNVKEGKGGLRDLQTLYWIGKYIHRARGAAELVDAGLLTETEYHGFRRAEGFLLAVRCHLHEITGRPEDRLTFDFQKQIAERMRFAERREKSAVERFMQYYFLQVKRVGSLTGVFLAQMDQQFARKRARTGLLAGFNAKSRMLKGYTVFGGKIAAPGDNWFRDDPVRLIEIFQLAEANGLEIDPRSMRQADRDSVLIKDQVRNDPRANAIFLDLLCGRNDPETALRWMNEAGVFGKFVPDFGRVNAQMQFNMYHHYTVDEHTIRAIGFLSKIEKGELAKEHPRSTREIHKVKSRRVAFVAALLHDIAKGRGGDHSILGAEVAEELCPRFGLDEDETDLVAWLVLQHLLMSSTAQKRDLTDPKTIEDFVAEVQSLERLRHLAILTSVDIRAVGPGTWNSWKGQLLGELYDAAHERLRLGHMKHHRSERVAAKKEAVREALGGKAALLEKHGRLLPDSYWIAEPENVISRNIVQYDVAREISEDLSIHCEFDEERGATLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPFAEERQLARIEQAIADAIANRGELVPKLAKRPLKQTRAGAFDVRPRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTDLTGAKITDESRMDTIRQALLDAASDARQAELEPA", "sequence_length": 919, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70d5e3080ebe7c4c4e802d64d69d3c4ca556a17603177d65d685cdbcbd98b3dd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2N784.json", "taxon_id": "314225", "uniprot_accession": "Q2N784", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Legionella pneumophila (strain Paris)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf294-pf03445.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03445", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf294-pf03445.yaml" } ], "pfam_ids": [ "PF01966", "PF03445", "PF08335", "PF27444", "PF27446" ], "protein_name": "Bifunctional uridylyltransferase/uridylyl-removing enzyme", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNDNRIIKNTIKQFKEKLCKDFSQKANITSITRKLAVFIDTILIQLFIKNKLHFGDNFCLLALGSYGRRELQLHSDIDLLILHTEKVSNIQLQRAQKFIQDCWDVGLEVSHQITTVSSCANLASQDLSVISTIMDMFLLCGHGALMEELIYQTHTLHMWPSHQYFFAKLQEQQNRYAKYGETAYNLEPNIKNGPGGLRDLQILLSISKRHFKIKKLAEGIGYGFITDKEYEELKYCQNFLWRVRFALHMLAGKPEERLSFDYQVKLAQFFGYQDQSHILAIEQFMKDYFKVIKRNRELNEMLLQWFNETIVYHQKQKIIRLDDEFQLSNRFIEVRNNRVFKQNPQSILKLFYWLVKRPDIEGVRASTIRLIRESLFLMGKRFRESKETANIFINIFRTGNDPYDALQRMNRYGVLAHYLDCFATVTGQMQYDLFHAYTVDQHTLFVIRNISRFKKNEYAKQFPLCAKIISALEKPEILYLGALFHDIAKGRGGDHSELGAIEAQQFTQRHYMEAEDSKLIVWLVRYHLLMSQTAQRKDIYDPKTIEQFCQLLPHARYLDYLYLLTVADICGTNPTLWNAWKDSLLKELYHAAKTRLHKQQELLDEAALISIRKQYAMDILISDGISSRVIQDLWSQFKGKYFLHESPEVIARHTKAILNSKQFPVVIIMPHHSQGGTEVFIYMPHKDERFTITTSVLSNHHVTIQEAAIITCDNQFDLDTYIILDENNQAFLNEQRARDIQKSLCDHLANTGRLPAVSRRRLSRALTHFNVKTQINFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMFYISNQTGYSLNHEEKTILKEKLILEISKSKY", "sequence_length": 861, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f6fe78bee530e38247ab2e43d9c078c80e58eabd6f13492de73f299d102c5f25", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5X4J1.json", "taxon_id": "297246", "uniprot_accession": "Q5X4J1", "uniprot_release": "2026_03" } ], "pfam_id": "PF03445", "short_name": "DUF294", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glycine-transporter-ipr005115.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005115", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycine-transporter-ipr005115.yaml" } ], "pfam_ids": [ "PF03458" ], "protein_name": "UPF0126 membrane protein YvgT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAWELLSVIGIIAFAVSGAIVAMEEEYDILGVYILGIVTAFGGGAIRNLLIGVPVSALWEQGAYFQIALLSITIVFLFPKLLLKHWNKWGNLSDAIGLAAFAIQGALYAVKMGHPLSAVIVAAVLTGSGGGIIRDLLAGRKPLVLKAEIYAVWAALGGLIVGLGWLGNSFGLYVLFFVLVVCRVCSYMFNWKLPNRSFRLDN", "sequence_length": 202, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "15c988aad3410a8957b3cd200897cd89587124c2ae5bc77a615ffbd98da9587e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32216.json", "taxon_id": "224308", "uniprot_accession": "O32216", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf007874.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007874", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf007874.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glycine-transporter-ipr005115.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005115", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycine-transporter-ipr005115.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gly-transporter-pf03458.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF03458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gly-transporter-pf03458.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AFP0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03458" ], "protein_name": "UPF0126 inner membrane protein YadS", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "9606f997b3fdbe77b75c7965ba87c8b00fa1cd7cf06b099aadc91c92c03d64f9", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLVYWLDIVGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGGTIRDMALDHGPVFWVKDPTDLVVAMVTSMLTIVLVRQPRRLPKWMLPVLDAVGLAVFVGIGVNKAFNAEAGPLIAVCMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIVHATAYYTFSVPLETASMMGMVVTLLIRLAAIRWHLKLPTFALDENGR", "sequence_length": 207, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "9606f997b3fdbe77b75c7965ba87c8b00fa1cd7cf06b099aadc91c92c03d64f9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AFP0.json", "taxon_id": "83333", "uniprot_accession": "P0AFP0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gly-transporter-pf03458.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gly-transporter-pf03458.yaml" } ], "pfam_ids": [ "PF03458" ], "protein_name": "UPF0126 inner membrane protein YadS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLVYWLDIVGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGGTIRDMALDHGPVFWVKDPTDLVVAMVTSMLTIVLVRQPRRLPKWMLPVLDAVGLAVFVGIGVNKAFNAEAGPLIAVCMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIVHATAYYTFSVPLETASMMGMVVTLLIRLAAIRWHLKLPTFALDENGR", "sequence_length": 207, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9606f997b3fdbe77b75c7965ba87c8b00fa1cd7cf06b099aadc91c92c03d64f9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AFP1.json", "taxon_id": "199310", "uniprot_accession": "P0AFP1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glycine-transporter-ipr005115.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005115", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycine-transporter-ipr005115.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gly-transporter-pf03458.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gly-transporter-pf03458.yaml" } ], "pfam_ids": [ "PF03458" ], "protein_name": "UPF0126 inner membrane protein YicG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGGSVRDILLGHYPLGWVKHPEYVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSIIGAQVALDMGHGPIIAVVAAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFASAVLYIALQHYVSNHDVVIISTLVFGFFARLLALRLKLGLPVFYYSHEGH", "sequence_length": 205, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e024527a309c561b9562434cb35df4309d54bbb56ebdf19c58b168bf0879a21b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AGM2.json", "taxon_id": "83333", "uniprot_accession": "P0AGM2", "uniprot_release": "2026_03" } ], "pfam_id": "PF03458", "short_name": "Gly_transporter", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 13, "discovery_scanned": true, "example_count": 13, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chloroplast-duf-pf14476.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14476", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chloroplast-duf-pf14476.yaml" } ], "pfam_ids": [ "PF00646", "PF03478", "PF14476" ], "protein_name": "Probable F-box protein At4g22030", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLQASRFMLTTSCSSCTRTRSAISIPKLPKFNVSIPQIPIKNRNFRVEEPILRLDGFAEDLDLSLSERQRQKKRGCDDQVLQRSRLMAVLEEVIDRVEMHKNIGEQRNNWNSLLLNSVNMITLTAALMAGIASMNASGIDSVSAVSIASTVLLASATGLAALMNKIQPSQLVEEQRNATRLFKQLRNRIEMVLREKSEDGISEEDVKEAIKRVLCLDKAYPLPLVGTMLEKFPQEFKPATWWPETKPEPTHSRTEANGWNSELEMEMREVVEVIKSRDAEEYEKLGNVALKLNRVLAISGPVLTGIAAVSSGFIGHGSGLAGVVATTCASLAAVVNTLEHGGQVGMVVEMYRNSAGFFSLMEDTIKTERRENGQVFETKVALKLGRSLSELRDLARRSSLSRFDGSSWSKLPSDLLNMVFERLGFADFQRAKSVCPSWLDASRQSASKNQIPWLIMFPEKGFFGDIPRQIFETQVNYDVLANGVRRVRPELGNVFHIKNTHLVVTMTGETLRVDSIIRSDSDVWSFCIYQMDSSNSKWEKLTSLGDEAILLDQGITVLANAIEGVNRNSIYFSGVQFQYGYVSSEKDICVFNLNTQKVERPYRNISSFIQSCDARWFVPNITRT", "sequence_length": 626, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a902b0be069d4039d788af6f93ad5954b8cff68769c2482b2b8dc7a663b10a59", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O65451.json", "taxon_id": "3702", "uniprot_accession": "O65451", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-superfamily-this-short-domain-is-commonly-found-at-the-n--cd09917.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09917", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-superfamily-this-short-domain-is-commonly-found-at-the-n--cd09917.yaml" } ], "pfam_ids": [ "PF03478" ], "protein_name": "Uncharacterized protein At1g65760", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVDCDWSNLPEELLHMIVLLLFSVVELKRFRSICRSWRSSTSGVNRNNPFPSRPRIHFDPIDPSETLSSDDSYISRPGAFLSRAAFFRVTLSSSSSKGWMIKSDMDINSGRFRLLNVLSRYPLRLYSESIDLLEFTVSEIREAYTVLNTAKRRSATKGYQRSAPVKVKEGEGHRDGVLGIGRDGNINYWDGNVLSELKQMGDHFSDIIVHKGLINSDLEISRFGTSLDENITDGCWGDLRFVEGCGELYIVERLPKNTRKRKAGDFFHNSRTVGFKAYKMDEELAKWIEIKTLGDNAFLMGTDTCFSVLAHEVYGCLPNSIYYTENTWPKVCKLEDGNGSSIIVTMSESSKSSFEMFYPSFV", "sequence_length": 362, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "06f6999f80a8be2368ae600b45d3d2081f125a51c7026222d273e66315d91345", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C2F5.json", "taxon_id": "3702", "uniprot_accession": "P0C2F5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/kib1-4-beta-propeller-ipr005174.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/kib1-4-beta-propeller-ipr005174.yaml" } ], "pfam_ids": [ "PF03478" ], "protein_name": "F-box protein At2g26160", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKPEWSELPGDLINLTANRFSSISDVLRVRSICKPWRSAAATPKSFQCNLPSSNKMIETVLSPTTFFRVTGPSSCSYKGWLIRTKQVSESSKINLLSPFFRQLLTPSQQTLDLLKFEVSEIRQSYEIHIFDKYLIQGVIGKEGPSHILSRVVFLDNLIFAVGQDDKIWCCKSGEESSRIWTKIKNQVEDFLDIILHKGQVYALDLTGAIWWISLSPLSLLQFTPSIPMDYDGYDSCNKRLVEYCGDLCIIHQLRLKKAYIRRSQRTVGFKVYKMDEYVAKWVEVRSLGDKALIVARDSCFTVVASEYHGCLNNSIYFVDNVRKSVIRMKL", "sequence_length": 331, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f796a491de446fddc2052e6c5f97e9a02cfa7f74834a830febcb624e1046b121", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1PEZ8.json", "taxon_id": "3702", "uniprot_accession": "Q1PEZ8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-kib1-4-pf03478.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03478", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-kib1-4-pf03478.yaml" } ], "pfam_ids": [ "PF00646", "PF03478" ], "protein_name": "Protein UNUSUAL FLORAL ORGANS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSTVFINNPSLTLPFSYTFTSSSNSSTTTSTTTDSSSGQWMDGRIWSKLPPPLLDRVIAFLPPPAFFRTRCVCKRFYSLLFSNTFLETYLQLLPLRHNCFLFFKHKTLKSYIYKRGGTNDDDSNKAEGFLFDPNEIRWYRLSFAYIPSGFYPSGSSGGLVSWVSEEAGLKTILLCNPLVGSVSQLPPISRPRLFPSIGLSVTPTSIDVTVAGDDLISPYAVKNLSSESFHVDAGGFFSLWAMTSSLPRLCSLESGKMVYVQGKFYCMNYSPFSVLSYEVTGNRWIKIQAPMRRFLRSPSLLESKGRLILVAAVEKSKLNVPKSLRLWSLQQDNATWVEIERMPQPLYTQFAAEEGGKGFECVGNQEFVMIVLRGTSLQLLFDIVRKSWLWVPPCPYSGSGGGSSGGGSDGEVLQGFAYDPVLTTPVVSLLDQLTLPFPGVC", "sequence_length": 442, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f05b749fb83886f9466181066d2c96cd1b174d25f8044c2c654c10cc0cb2505a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q39090.json", "taxon_id": "3702", "uniprot_accession": "Q39090", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-red-or-far-red-light-signaling-pathway-go0090227.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090227", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-red-or-far-red-light-signaling-pathway-go0090227.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-superfamily-this-short-domain-is-commonly-found-at-the-n--cd09917.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09917", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-superfamily-this-short-domain-is-commonly-found-at-the-n--cd09917.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/kib1-4-beta-propeller-ipr005174.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/kib1-4-beta-propeller-ipr005174.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-kib1-4-pf03478.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03478", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-kib1-4-pf03478.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q84V03", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00646", "PF03478" ], "protein_name": "Protein PHOTOPERIODIC CONTROL OF HYPOCOTYL 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "dff0cdf1ee482eafe275bc639c21c9022d7ae39af347111a933c7d4a8f153691", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSEHVMVLGKGNKGISKNSSVNPYESAWLGRWTQSGSEVKFHDGETNCSKQLIRPEDENHGVEVLPFPMFKVSQKRETTTTTTTKPSFHEDVGSSSRAMVNRMPWMYPQGENFSSSNRLDFPIQEKTTQNLLELIRPVRIYATVDSVNLPKEDSHQLLKGSTVSMKLKGKIFGGYLDLFPNQDHSHNRGGVRLQSLESSKDTQEDGPRKNESSAETNTLEMDRLQTIHLSGSISSSSTKGKGIKGYSAIPRTEIPDMNEEPPLVPDRENSVDGHQGETSNSATQSMNVEHFLSRDCKRVRLEPEVEASSRWVKRLKTSPSDSSETKSMMKMKEASLGEKENNNLFLEILKSGINNLQPRNQEPVVSQSNDLRQGGDDITLLHPWIQRWCKKKTTSTDQPTGQEASFEPESHKEFEKKQYPSIAAMALMGKALSGLNPYGLRKTNSLMVWNARDLSFTYRSLRWNLTMADWPLLPNDLLELIMGHLETSFEIFLFRSVCSSWRSVVPPLDHSRCLGIKTHDISFNVGFSFNGRPTNEYCTLKKIPIYLVKFWTPFGDDYLLAEMRERNDGEPKLLLSPLSSNGIKYGMGINKVLFNSLTSPIIPFGQYYEITYIEKRPSEYRFGFPYKLEWVEITERVEFLKLDSEDSRDFAVLFAGRMCNLVMYRSRNMSWTQVVEHPEKYAYQDLVAFKGKFYAVDSSGRGRVFVVELSFEVTEIPSVGGSQQSSKESLVQSGEELLLVQRFTPVGRRYDEYIYIHGSECLDLMKKEERESGFKLMT", "sequence_length": 778, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "dff0cdf1ee482eafe275bc639c21c9022d7ae39af347111a933c7d4a8f153691", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q84V03.json", "taxon_id": "3702", "uniprot_accession": "Q84V03", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/kib1-4-beta-propeller-ipr005174.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/kib1-4-beta-propeller-ipr005174.yaml" } ], "pfam_ids": [ "PF03478" ], "protein_name": "Probable F-box protein At1g44080", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKVGWSDLHEDLIDLLANNLSSNINLLRFRSICKPWRSTVATKKRLHNHFERNLPTFKKKKTVVSPSTFFRVTLPSPCRNKGWLIKNRQVSESSKNNLLSPLSGKTITPSDKTLDLLKVECFRDSSILQLFADSDRVVFLDNVFFVVDFKNEIWCCKSGEETRHWTRINNEEAKGFLDIILHKGKIYALDLTGAIWWISLSELSIYQYGPSTPVDFYEIDNCKEKRLVEYCGELCVVHRFYKKFCVKRVLTERTVCFKVYKMDKNLVEWVEVSSLGDKALIVATDNCFLVLASEYYGCLENAIYFNDREDVSVFKLDDCSIITKQINSSSSSSHQSCFQMFSTSFF", "sequence_length": 347, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "485467c60ce4f71a7e86d6e68957e97108852c6f24862017c1825a21abe9603c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9C6X9.json", "taxon_id": "3702", "uniprot_accession": "Q9C6X9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-superfamily-this-short-domain-is-commonly-found-at-the-n--cd09917.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09917", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-superfamily-this-short-domain-is-commonly-found-at-the-n--cd09917.yaml" } ], "pfam_ids": [ "PF03478" ], "protein_name": "Putative F-box/kelch-repeat protein At5g24040", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVKWSELPPEILHLISLKIDNPFDLIHFRSVCSFWRSSSLLKFRHMTSLRCPLPLDPGGCGDDCHILSSRVYLLKCPNRDRPQYWMFKLQAKENGEVVLHSLFLRRNSSAYGCLYPSLSIDLLNCQIFELAQEHVACYSEWFELFECISKCEERIGFMGLNREKNEYMILGKLSFNGLAMYRSVDNRWTELEITPDSFFEGIVPFKGKFYAIDRTGKTTVVDPTLEVNTFQRSRPCDKTRKRWLLMTGDKLILVEMCTKSRYDFHIPNIREKKIWFEISELNEERNDWDQVEDMDGRVLFLEHYCTFSCLATEIPGFRANSIIFMDLWGGSNSYELESILVYEFNEKGVRSLRDKLEYIELFPFPPGWVISNG", "sequence_length": 373, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "048f338a43094422ddc24262f88677724c4795db1b993a43da303f9b7d2c71d4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FLV8.json", "taxon_id": "3702", "uniprot_accession": "Q9FLV8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/kib1-4-beta-propeller-ipr005174.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/kib1-4-beta-propeller-ipr005174.yaml" } ], "pfam_ids": [ "PF03478" ], "protein_name": "Putative F-box protein At5g60060", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSSSLLPSQWSDLPLDILELISDRLDHDSSDTIHLLCLRSVCATWRLSLPLSNKNNRLSKFPKYLPFWSSSSSSSGFFTLKQSNVYKLEAPLNPRTCLVKLQETTPGIMRVLDLFSNDRICFLPENFPSKIDLQEFHVRLVRRTYRMEYANNGGGAVPCFWSLHSDKVVILSSGEDSAIIAIHSGGKLGFLKSGNDEKWKILDNSWNVIYEDIMLYKDNRCIVVDDKGKTVIYDVDFKVSDLAEGLVGGGGHKKHLVECSGGEVFLVDKYVKTVWCKSDISKSVVEFRVYNLKREEKRWEEVRDLGDVALFIGDDCSFSVQNPAGDLAGGFIFYSDYRNGGRSRGICSDGDGVFNVDMQGDFVFSIKPNYFGP", "sequence_length": 374, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f3409a6248d8ea973a506c4485606a226d44e79dbcb43c4fdf91290189428ce6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LVG8.json", "taxon_id": "3702", "uniprot_accession": "Q9LVG8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-l-ascorbic-acid-biosynthetic-process-go2000083.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000083", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-l-ascorbic-acid-biosynthetic-process-go2000083.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/kib1-4-beta-propeller-ipr005174.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/kib1-4-beta-propeller-ipr005174.yaml" } ], "pfam_ids": [ "PF03478" ], "protein_name": "Putative F-box protein At1g65770", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADWSTLPVDLLNMIAGRLFSNIELKRFRSICRSWRSSVPGAGKKNPFRTRPLILLNPNPNKPLTDHRRRGEFLSRSAFFRVTLSSSPSQGWLIKSDVDVSSGKLHLLDPLSRLPMEHSRKRVDLSEFTITEIREAYQVHDWRTRKETRPIFKRVALVKDKEGDNQVLGIRSTGKMMYWDIKTWKAKEEGYEFSDIIVHKGQTYALDSIGIVYWIRSDLKFIRFGPLVGDWTGDRRLVECCGEFYIVERLVGESTWKRKADDTGYEYAKTVGFKVYKFDDEQGKMMEVKSLGDKAFVIATDTCFSVLAHEFYGCLENAIYFTDDTMIKVFKLDNGNGSSIETTIYPYAQSCFQMFVPSFL", "sequence_length": 360, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eef14fca46cc7494f4c413d41884484e294e0669ab8cb6f9716ac131e7be3e2c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SHX9.json", "taxon_id": "3702", "uniprot_accession": "Q9SHX9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-arabidopsis-thaliana-f-box-wd-40-repeat-containi-cd22157.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22157", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-arabidopsis-thaliana-f-box-wd-40-repeat-containi-cd22157.yaml" } ], "pfam_ids": [ "PF00646", "PF03478" ], "protein_name": "F-box only protein 13", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPSSATSTYLLSLKQVSLTASSPLLLQLKDRFFHQPKLLNMGFSTGKRKSRDEEEDRVSFFASEFPMDDLNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSFKLACSQIPTRDPWFFMIDNDSNSSSFVFDSTENSWKNLNRRDFLHHHRQDFIPVASSGGLLCYRCSISGDFLLRNPLTGSSRDIPSQDNNNNKPLQAVAMTTTTVTPSSYTLVTISGEIPNLSFKIYESNADSWSKDQELESVKNNDSSLHDDYDTDSGTVYFLSKQGNVVVASNNLQRSPSKQYSSVITVTDEAEIVYFLSSYGTIVACDLTKRCFTELPKLLPPFLEYSIDLVECEGTMYVILLSEFFESASLRIWRLDNNREWVQVGMLPPALSHELYGKKGDINCVGGAGNKILVCFNASPPEVYCRYFVYDLVAEEWNELPKCFKDGEAVDFVSALSFQPRIEATV", "sequence_length": 457, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e33eca07e8d8be548d168b1d2556f2c3212234895ce512d3df6d84b9df4bfd32", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SMZ3.json", "taxon_id": "3702", "uniprot_accession": "Q9SMZ3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/kib1-4-beta-propeller-ipr005174.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/kib1-4-beta-propeller-ipr005174.yaml" } ], "pfam_ids": [ "PF00646", "PF03478" ], "protein_name": "F-box protein KIB4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDSNKKTCNDAKQPILVLDLVRLVLERLSFVDFHRARCVSSVWYSASKSCIGGTNPTAPWIILFPNEHVKTNNDSCKSIDPRDHSSYTIRDLGFDMVRSRCLASSGSWFLMLDHKTDFHLLNLFTRERIPLPSLESIDGLQMKFVRTGDCGFEMSMYYKAHGLISYGKNSDLRISDAVLWVDEKNGDYFVVWFHHSTFAYHKKGGDNNSWKVFQPSKHQGCINMVFKEGKLYVLNPARNISVFDFSGGHSPVEYATPPSPNDDYYVRNLAVTLSGEVLIISSNPKKCFVKLYKIDPKSSEWRLIKSIGDEALILDLGITVAAKDGVMRNCIYFSHHELLRYKGVSLCNDDKYGICIYHIKTKKKVQEFEHLTTSSPILFKDARWFFPTFGGN", 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"protein_name": "F-box protein KIB2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPLNSQAAGEEESNYQCRFPRFMHLSWKRPYLTRVFDLAVIQKKQKKEMSDSEEKKCNDDSKQPVLVLDLLRSILERLSFVDFHRGRCISLEWYSASESCLAVKNPTSPWIILFPSENVESKNDSCKLYNPRDHSSYIVRDLGFDLARSRCLASSGSWFLMLDHRTDFHILNLFTRVRIPLPPLESTGDGNVFKRVYENVSDGSCIKIDNAVLWVDEKRRDYLVVWNISRLFGYHKKGDENYSWKVFKPLKKNDCCIDMAFKENKLYVLSVTRKVTVYDFSGGDSPVKCATFPSLRFRNGYSYNTQGCHYKVAVTLSGEVLIIVAKVEPYPRVECFFAVYKMDHNSSGYERISLGGEALLLDLGITVEANCMKNCIYFSNDQFHRYNGKSLCDDSNKNGICVYHIRSRYVVQVFEHLTASSKIAFKDARSFFPIFGGKWLL", "sequence_length": 442, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eb8b032b8b07b886ba04aae04ca125a37279f498f88c775c8d8642f1f292450b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SU04.json", "taxon_id": "3702", "uniprot_accession": "Q9SU04", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-brassinosteroid-mediated-signaling-pathway-go1900459.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1900459", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-brassinosteroid-mediated-signaling-pathway-go1900459.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/kib1-4-beta-propeller-ipr005174.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/kib1-4-beta-propeller-ipr005174.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/galactose-oxidase-kelch-beta-propeller-ipr011043.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011043", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/galactose-oxidase-kelch-beta-propeller-ipr011043.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-kib1-4-pf03478.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03478", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-kib1-4-pf03478.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9SU05", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00646", "PF03478" ], "protein_name": "F-box/kelch-repeat protein KIB1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "383fa3bc27e77057e421488afbf80a6a8016398132b4a12e1ddc6eef07f29bf3", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTHKKQKKEMSDSEKKTFNEDSKHSILAVDLVRLILERLSFVDFHRARCVSSIWYIASKTVIGVTNPTTPWLILFPKGDVEIKKDSCKLYDPHENKTYIVRDLGFDLVTSRCLASSGSWFLMLDHRTEFHLLNLFTRVRIPLPSLESTRGSDIKIGNAVLWVDEQRKDYLVVWNISSLFGYHKKGDDRWKVFKPLENERCIIAMVFKENKLYVLSVDGNVDVFYFSGNDSPVRCATLPSSPLRKGHKVVVTLSGEVLIIVAKVEPYPRTRLCFFAVYKMDPKSSRWETIKSLAGEALILDLGITVEAKVMKNCIYFSNDQFHRYNENSLWNVSNKSGVFVYHFRSANVVQLVELLTASSRTSKILFKDARCFFPTFTSKWLL", 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"InterPro:IPR004352", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycoside-hydrolase-family-gh114-tim-barrel-domain-ipr004352.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glyco-hydro-114-pf03537.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03537", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glyco-hydro-114-pf03537.yaml" } ], "pfam_ids": [ "PF03537" ], "protein_name": "Uncharacterized protein MJ1477", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHLNKIRGKNMKKSHILGIIICIILIVGFFISFDSTFLDNPKMMSKSKNNIRNAENLTNISKNSNNLKFLWAYQLQNADIDEIANSNFTLIVIDYSKDGTENGKYSEEEIEKLKKAGKIPIAYISIGEAEDYRFYWDNEWLKNPPKWLGDENPEWEGCYAVKYWHPEWKKIIFSYLDKIIQQGFCGVYLDKVDEFEYWAENGYDEDFTAKEMIKFIVEISNYCRNKTNNSFIIIPQNGERLLEYDKHGKLLNTVSGWAVEDLFYDGVEQKTEEEINERIKLLDKVKDSGKFVLVVDYVDDGTKTNENLKRVEDFINKSLDKGYVPYVAKSDRELDELNTWWLKLIN", "sequence_length": 346, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "01a2b8b94b51b0c019963b7179108852ae16eff3f2cd31db02d1a6803475c0ac", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58872.json", "taxon_id": "243232", "uniprot_accession": "Q58872", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glyco-hydro-114-pf03537.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03537", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glyco-hydro-114-pf03537.yaml" } ], "pfam_ids": [ "PF03537" ], "protein_name": "Uncharacterized protein DR_0705", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKPLLCSLLLLSACAGPSEPQASGAGPAQTPPPVTVPMTPPSKKPALSAVQHWGVQLTGYGQTRLNAVHTSPFELVVVDPFDDDGTPWPAAEVRAAAQGRWLIAYLSMGAAESYRSYWQKGWKVGAPAWLLNEDPDWPGNFDVAYWDPAWQAIALAQLDRVIAQGFDGVYMDLIDAYQRHDNRPGARAEMVAWVCKIAAHARAQNPQFVIIPQNAAELIRDPGYAACVDASGNEETYVYAANRPTEAARQRELLASYRLWQQAGKPVFTIEYANQPALMKSAAERARAAGLIPYVGERSLDKLILNQP", "sequence_length": 308, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7218ef24e60f1603a9bc047884f783c82786172eaf8ba6d29d79e6a08d14c1dc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RWG3.json", "taxon_id": "243230", "uniprot_accession": "Q9RWG3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glyco-hydro-114-pf03537.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03537", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glyco-hydro-114-pf03537.yaml" } ], "pfam_ids": [ "PF03537" ], "protein_name": "Uncharacterized protein TM_1410", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSHLKNILFIIIVSLFFISSCSTVMSTEGWFMPFDNWLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIKIMVDAGVVPVAYVNIGQAEDYRFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDSFEYWAQEGVISRRSAARKMINFVLEIAEYVRERKPDMLIIPQNGENILDFDDGQLASTVSGWAVENLFYLKTIPLEENETKSRLEYLIRLNRKGKFILSVDYVDDGSDSFENISRILDYYEKAKRNGCIPYAARSDLELDEMNVIEGIQPPEALKDYESRTYR", "sequence_length": 323, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7693ac90d6826f0ecbd5ad6854a37795da2509efcc188aceccae27437be62e3f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9X1D0.json", "taxon_id": "243274", "uniprot_accession": "Q9X1D0", "uniprot_release": "2026_03" } ], "pfam_id": "PF03537", "short_name": "Glyco_hydro_114", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 13, "discovery_scanned": true, "example_count": 13, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uba-like-domain-found-in-yeast-defective-in-cullin-neddylation-protein-cd14352.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd14352", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uba-like-domain-found-in-yeast-defective-in-cullin-neddylation-protein-cd14352.yaml" } ], "pfam_ids": [ "PF03556", "PF22566" ], "protein_name": "Defective in cullin neddylation protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNNKIKRKDASPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEIGTFTDEVSTVAHPPVYPKELTQVFEHYINNNLFDIDSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEPLKREDFLSTWFMQGCSTISDMQECIKTLDVKLHEDLQYFTQIYNYAFNLILDPNRKDIDTDEGIQYWKLFFQPEYPVRMEPDLLEAWFRFLRDEGKTTISKDTWRMLLLFFKRYPTIQKIISDYDETAAWPFIIDEFYECLQDQQ", "sequence_length": 269, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "17dd989f833c2030547f9c8513d8498c8d68066338c1a52f6368c90a707a64d1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12395.json", "taxon_id": "559292", "uniprot_accession": "Q12395", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-protein-neddylation-go2000436.yaml", "qualification_status": 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], "protein_name": "DCN1-like protein 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1ce2a094a1bc97a8707c48672d8324a41fb5100a0d88af4ee8382435ac2d7ef5", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MHKLKSSQKDKVRQFMACTQAGERTAIYCLTQNEWRLDEATDSFFQNPDSLHRESMRNAVDKKKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFSRKEFLDGMTELGCDSMEKLKALLPRLEQELKDTAKFKDFYQFTFTFAKNPGQKGLDLEMAVAYWKLVLSGRFKFLDLWNTFLMEHHKRSIPRDTWNLLLDFGNMIADDMSNYDEEGAWPVLIDDFVEYARPVVTGGKRSLF", "sequence_length": 259, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "1ce2a094a1bc97a8707c48672d8324a41fb5100a0d88af4ee8382435ac2d7ef5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PH85.json", "taxon_id": "9606", "uniprot_accession": "Q6PH85", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/ubiquitin-like-protein-binding-go0032182.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032182", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/ubiquitin-like-protein-binding-go0032182.yaml" }, { "cited_uniprot_accession": "", "commit": 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"data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:F4JTN2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03619" ], "protein_name": "Protein LAZ1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0083c2cf315507258c6ac036d9ddf28ca52e323836bc54d41f34bc76e4041cf2", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDILKSYHLLAAAYSAPAWASFMAGAFLVLTLSLSLFLVFDHLSTYKNPEEQKFLIGVILMVPCYSIESFASLVKPSISVDCGILRDCYESFAMYCFGRYLVACIGGEERTIEFMERQGRKSFKTPLLDHKDEKGIIKHPFPMNLFLKPWRLSPWFYQVVKFGIVQYMIIKSLTALTALILEAFGVYCEGEFKWGCGYPYLAVVLNFSQSWALYCLVQFYGATKDELAHIQPLAKFLTFKSIVFLTWWQGVAIALLSSLGLFKSSIAQSLQLKTSVQDFIICIEMGIASVVHLYVFPAKPYGLMGDRFTGSVSVLGDYASVDCPIDPDEIRDSERPTKVRLPHPDVDIRSGMTIKESMRDVFVGGGEYIVKDVRFTVTQAVEPMEKSITKFNEKLHKISQNIKKHDKEKRRVKDDSCMSSSPSRRVIRGIDDPLLNGSFSDSGVTRTKKHRRKSGYTSAESGGESSSDQAYGGFEVRGRRWITKD", "sequence_length": 485, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0083c2cf315507258c6ac036d9ddf28ca52e323836bc54d41f34bc76e4041cf2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4JTN2.json", "taxon_id": "3702", "uniprot_accession": "F4JTN2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/solute-trans-a-pf03619.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03619", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/solute-trans-a-pf03619.yaml" } ], "pfam_ids": [ "PF03619" ], "protein_name": "Organic solute transporter alpha-like protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEIVKTIIPHNRSYIEPPIPSATEWLANMSVMHVSCLTIACVFVAITFLSSFFHLFFVLKYVSNERIRNDMYALIFMFPITTFASLVGMFIPRAAIFLYAVSLVYFMFTLFIMVTLLFNIFGGRQEMSAYLLQRNIRVNFTVPPLCFFKFLPTVESTDQNLRRIEWLVFQTPIIRTLLELVSVVVSMEQEGRRESVWFVFSQLMALLSMCIAFYGCYVMVPLGREKHAPYRFDFLFRTCDIAQCIYTIQKFVFEFAAAVGLITSDRYLPAAAKALWWASFMCTWEMMLLSALCSYCLRPAKCKFFDLYPGNDMPALSARDGSNSRVPSFSRRLSIEYEPRIAGVMLEPPSRSSLSITPRDKIEDPTTVSYFADNFDSLSQIQGQ", "sequence_length": 384, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6546676372aef1cf6f27c7eeeba862c920428d6fade6824947402c0f86a4a544", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O17204.json", "taxon_id": "6239", "uniprot_accession": "O17204", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-targeting-to-vacuolar-membrane-go0044395.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044395", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-targeting-to-vacuolar-membrane-go0044395.yaml" } ], "pfam_ids": [ "PF03619" ], "protein_name": "Vacuole membrane protein HFL1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENKLLCWWLYWPCVYSSIIATIISFYTITRHLLNYRKPYEQRLSIRILLLVPIFSVSCASGIIKPEAAQFYVDPIREFYEAFVIYTFFTFLTLLLGGERNIITVLSLNHAPTRHPIPLIGKICKPIDLSDPFDFLFVKKGILQYVWFKPFYCFGTLICSAWKLPKFEIFLNVFYNISVTWSLYSLALFWKCLYPELTPYKPWLKFLCVKLIIFASYWQSIIIQGLVVTGKLGTGNQDRTSGYVYKNGLLCIEMVPFAILHAVAFPWNKYTAFSIPYGARMKFIYALKDFLGCGDLIWDFKQTLFAGPLYYNYRNFDPEAMDLLSTRQQSGATMERLKHGLRFTDNGRNSYWVAYGSIDNNLVPESIEESWEDDIAGQRTFPEDPNYPVVHDYTMGHRYSRSMNDLRRDVQSRSSMAC", "sequence_length": 418, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9aa29286a7207ffa9ca599d6c3c8955d5fc6759d75822617ee8d0b198c00e11e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P36142.json", "taxon_id": "559292", "uniprot_accession": "P36142", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/germ-line-sex-determination-go0018992.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0018992", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/germ-line-sex-determination-go0018992.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-secretion-go0051046.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051046", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-secretion-go0051046.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/solute-trans-a-pf03619.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03619", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/solute-trans-a-pf03619.yaml" } ], "pfam_ids": [ "PF03619" ], "protein_name": "Transmembrane protein 184A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNASGFLKTAGAPLVSATWLPPSPPPAMPTVAAGPQMERVDNGSQGAPQLFLTSALARGVSGVFVWTALLLTGHQIYSHLRSYTAPREQRFVIRLLFIVPIYAFDSWLSLLLLGGHPYYVYFDSVRDCYEAFVIYSFLTLCFQYLGGESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCKQATLQFCIVKPVMALITIILQAFDKYHDGDFNIHSGYLYVTLVYNASVSLALYALFLFYFATRDLLRPFEPVLKFLTIKAIIFLSFWQGMLLAILERCGVIPEVQAVDGTRVGAGTLAAGYQNFLICVEMLFASLALRYAFPSQVYSEKKNSPVPPAPMQSISSGLKETISPQDIVQDAIHNFSPAYQQYTQQSTHEAPGPGQGGHPAPSTHPGPASGSGGGKKSRNIEKRMLIPSEDL", "sequence_length": 425, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c4125a353cbbf24ec63c1d71789c673289d316902112afd54b30a621f2e6111d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UFJ6.json", "taxon_id": "10090", "uniprot_accession": "Q3UFJ6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-brassinosteroid-mediated-signaling-pathway-go1900458.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1900458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-brassinosteroid-mediated-signaling-pathway-go1900458.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/solute-trans-a-pf03619.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03619", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/solute-trans-a-pf03619.yaml" } ], "pfam_ids": [ "PF03619" ], "protein_name": "Protein LAZ1 homolog 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGVTETSTYRDLHLPSLIIGGSFATVAICLSLYSILQHLRFYTNPAEQKWIVSVLFMVPVYATESIISLSNSKFSLPCDILRNCYEAFALYSFGSYLVACLGGERRVVEYLENESKKPLLEEGANESKKKKKKNSFWKFLCDPYVLGRELFVIEKFGLVQYMILKTFCAFLTFLLELLGVYGDGEFKWYYGYPYIVVVLNFSQMWALFCLVQFYNVTHERLKEIKPLAKFISFKAIVFATWWQGFGIALLCYYGILPKEGRFQNGLQDFLICIEMAIAAVAHLFVFPAEPYHYIPVSECGKITAETSKTEVKLEEGGLVETTETQVEASGTSIKESVQDIVIDGGQHVVKDVVLTINQAIGPVEKGVTKIQDTIHQKLLDSDGKEETEVTEEVTVETSVPPKE", "sequence_length": 403, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bcc6cfad7515e1ee3d83b5188a2767e211b6dd87c756a7ce77309abd75d52387", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5BPZ5.json", "taxon_id": "3702", "uniprot_accession": "Q5BPZ5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/solute-trans-a-pf03619.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03619", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/solute-trans-a-pf03619.yaml" } ], "pfam_ids": [ "PF03619" ], "protein_name": "Transmembrane protein 184A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNVSGILETAGVPLVSANWPQPSPPPAVPAGPQMDHMGNSSQGAPWLFLTSALARGVSGIFVWTALVLTCHQIYLHLRSYTVPQEQRYIIRLLLIVPIYAFDSWLSLLLLGDHQYYVYFDSVRDCYEAFVIYSFLSLCFQYLGGEGAIMAEIRGKPIKSSCLYGTCCLRGMTYSIGFLRFCKQATLQFCLVKPVMAVTTIILQAFGKYHDGDFNVRSGYLYVTLIYNASVSLALYALFLFYFTTRELLRPFQPVLKFLTIKAVIFLSFWQGLLLAILERCGVIPEVETSGGNKLGAGTLAAGYQNFIICVEMLFASVALRYAFPCQVYAEKKENSPAPPAPMQSISSGIRETVSPQDIVQDAIHNFSPAYQHYTQQATHEAPRPGTHPSGGSGGSRKSRSLEKRMLIPSEDL", "sequence_length": 413, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "09d8258f1a6e2e7c4a6cf4e5c71c217c9816ba5d02b7d32a5613139009ff666f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZMB5.json", "taxon_id": "9606", "uniprot_accession": "Q6ZMB5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/solute-trans-a-pf03619.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03619", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/solute-trans-a-pf03619.yaml" } ], "pfam_ids": [ "PF03619" ], "protein_name": "Organic solute transporter subunit alpha", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPGRTQIKLDPRYTADLLEVLKTNYGIPSACFSQPPTAAQLLRALGPVELALTSILTLLALGSIAIFLEDAVYLYKNTLCPIKRRTLLWKSSAPTVVSVLCCFGLWIPRSLVLVEMTITSFYAVCFYLLMLVMVEGFGGKEAVLRTLRDTPMMVHTGPCCCCCPCCPRLLLTRKKLQLLMLGPFQYAFLKITLTLVGLFLVPDGIYDPADISEGSTALWINTFLGVSTLLALWTLGIISRQARLHLGEQNMGAKFALFQVLLILTALQPSIFSVLANGGQIACSPPYSSKTRSQVMNCHLLILETFLMTVLTRMYYRRKDHKVGYETFSSPDLDLNLKA", "sequence_length": 340, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9f75b4d123288f373eab3b68b32323cf428e0b480eb417b0393473e01105b461", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q86UW1.json", "taxon_id": "9606", "uniprot_accession": "Q86UW1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/solute-trans-a-pf03619.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03619", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/solute-trans-a-pf03619.yaml" } ], "pfam_ids": [ "PF03619" ], "protein_name": "Organic solute transporter subunit alpha", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPGRTHIKLDPRYTAELLELLETNYSISPACFSHPPTAAQLLRALGPVDIALTIILTFLTTGSVAIFLEDAVYLYKNTLCPIKKRTLIWSSSAPTVVSVFCCFGLWIPRALTLVEMAITSFYAVCFYLLMMVMVEGFGGKKAVLRTLKDTPMRVHTGPCCCCCPCCPPLILTRKKLQLLLLGPFQYAFFKITLSIVGLFLIPDGIYDPGEISEKSAALWINNLLAVSTLLALWSLAILFRQAKMHLGEQNMGSKFALFQVLVILTALQPAIFSILANSGQIACSPPYSSKIRSQVMNCHMLILETFLMTVLTRMYYRRKDDKVGYEACSLPDLDSALKA", "sequence_length": 340, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eb6e122e1eeef40e4ecf447d4de40932794a4230df3d99ab2ce0f3fe41f862f3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R000.json", "taxon_id": "10090", "uniprot_accession": "Q8R000", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-brassinosteroid-mediated-signaling-pathway-go1900458.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1900458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-brassinosteroid-mediated-signaling-pathway-go1900458.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/vesicle-mediated-transport-to-the-plasma-membrane-go0098876.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0098876", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/vesicle-mediated-transport-to-the-plasma-membrane-go0098876.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/solute-trans-a-pf03619.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03619", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/solute-trans-a-pf03619.yaml" } ], "pfam_ids": [ "PF03619" ], "protein_name": "Protein LAZ1 homolog 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEWRGILCSLLFIVSVGESSSRFGIMWHPNLGVDSGQYLTWPILSASVFVVIAILLPMYLIFEHLASYNQPEEQKFLIGLILMVPVYAVESFLSLVNSEAAFNCEVIRDCYEAFALYCFERYLIACLDGEERTIEFMEQQTVITQSTPLLEGTCSYGVVEHPFPMNCFVKDWSLGPQFYHAVKIGIVQYMILKMICALLAMILEAFGVYGEGKFAWNYGYPYLAVVLNFSQTWALYCLVQFYNVIKDKLAPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSMGLVKGSLAKELKTRIQDYIICIEMGIAAVVHLYVFPAAPYKRGERCVRNVAVMSDYASIDVPPDPEEVKDSERTTRTRYGRHDDREKRLNFPQSVRDVVLGSGEIIVDDMRFTVSHVVEPVERGIAKINRTFHQISENVKRFEQQKKTTKDDSYVIPLNQWAKEFSDVHENLYDGGSVSDSGLGSTNRHHQSRVSGLWTRMRR", "sequence_length": 484, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cc10e724892cf7401ffb9156997bb918c6c09918827590342063e03984fc109a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q94CA0.json", "taxon_id": "3702", "uniprot_accession": "Q94CA0", "uniprot_release": "2026_03" } ], "pfam_id": "PF03619", "short_name": "Solute_trans_a", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Brucella abortus biovar 1 (strain 9-941)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf302-pf03625.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf302-pf03625.yaml" } ], "pfam_ids": [ "PF02537", "PF03625" ], "protein_name": "Fluoride-specific ion channel FluC 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf302-pf03625.yaml" } ], "pfam_ids": [ "PF02537", "PF03625" ], "protein_name": "Fluoride-specific ion channel FluC 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTREFIMLMMPPLTDGFPLDILVANVVACFLLGTVTALYARKIHSRDVHTIIGMGMMGGVSTFSSFAYGSVVLASASMSAFLIAAAYVTVSVVAGYVAVLAGMKFGEKSADILHRYPPMASIIDSGLVTVESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVLMQDKRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAMVTGTGTVTKYAAGD", "sequence_length": 254, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f9d687b2fb1c3f078007c79e466b539de0f692680adc8609f07332204e56a900", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8FZV1.json", "taxon_id": "204722", "uniprot_accession": "Q8FZV1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf302-pf03625.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf302-pf03625.yaml" } ], "pfam_ids": [ "PF02537", "PF03625" ], "protein_name": "Fluoride-specific ion channel FluC 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDIIILVVIGGAFGAMTREFIMLMVPPLTDGFPLDILVANVVACFLLGTVTALYARKIHSRDVHTIIGTGMMGGVSTFSSFAYGSVVLASASVSAFLIAAAYVTVSVVAGYVAVLAGMKFGEKSADILHRYPPMASIIDSGLVTVESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVLMQDKRTIGLDLPIRALAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAMVTGTGTVTKYAAGD", "sequence_length": 270, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2517338ff1d53a15390c125bcdb2795fcdb211ce7dfa3553354c9d14ce35b383", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8YI11.json", "taxon_id": "224914", "uniprot_accession": "Q8YI11", "uniprot_release": "2026_03" } ], "pfam_id": "PF03625", "short_name": "DUF302", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/n-acetylneuraminate-metabolic-process-go0006054.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/sialate-o-acetylesterase-domain-ipr005181.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005181", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sialate-o-acetylesterase-domain-ipr005181.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sasa-pf03629.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03629", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sasa-pf03629.yaml" } ], "pfam_ids": [ "PF03629" ], "protein_name": "Probable 9-O-acetyl-N-acetylneuraminic acid deacetylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNAIISPDYYYVLTVAGQSNAMAYGEGLPLPDREDAPHPRIKQLARFAHTHPGGPPCHFNDIIPLTHCPHDVQDMQGYHHPLATNHQTQYGTVGQALHIARKLLPFIPDNAGILIVPCCRGGSAFTAGSEGTYSERHGASHDACRWGTDTPLYQDLVSRTRAALAKNPQNKFLGACWMQGEFDLMTSDYASHPQHFNHMVEAFRRDLKQYHSQLNNITDAPWFCGDTTWYWKENFPHSYEAIYGNYQNNVLANIIFVDFQQQGERGLTNAPDEDPDDLSTGYYGSAYRSPENWTTALRSSHFSTAARRGIISDRFVEAILQFWRER", "sequence_length": 326, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fa2019e62a357a5d4daedb1e8595ca7c84845cae3a61a9fd2e503f5b2a13e1e9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P39370.json", "taxon_id": "83333", "uniprot_accession": "P39370", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/sialate-o-acetylesterase-domain-ipr005181.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005181", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sialate-o-acetylesterase-domain-ipr005181.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sasa-pf03629.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03629", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sasa-pf03629.yaml" } ], "pfam_ids": [ "PF03629" ], "protein_name": "Probable carbohydrate esterase At4g34215", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGGSITPGEDKPEIQSPIPPNQIFILSGQSNMAGRGGVFKDHHNNRWVWDKILPPECAPNSSILRLSADLRWEEAHEPLHVDIDTGKVCGVGPGMAFANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKRTEESRKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIASGGGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHLTTEAQVQLGLSLAQAYLSNFC", "sequence_length": 260, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "42ee9a3521d94c99761b0cbec64ee26f0305003a98bf285dae113e5c7af0aec0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8L9J9.json", "taxon_id": "3702", "uniprot_accession": "Q8L9J9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/sialate-9-o-acetylesterase-activity-go0106330.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0106330", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/sialate-9-o-acetylesterase-activity-go0106330.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/sialate-o-acetylesterase-activity-go0001681.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0001681", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/sialate-o-acetylesterase-activity-go0001681.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/sialate-o-acetylesterase-domain-ipr005181.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005181", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sialate-o-acetylesterase-domain-ipr005181.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sasa-pf03629.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03629", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sasa-pf03629.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/siae-c-pf28112.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28112", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/siae-c-pf28112.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9HAT2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03629", "PF28112" ], "protein_name": "Sialate O-acetylesterase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7e3836bc3fa5bbff91b3ce69e80ee95ce70f3dadd0d0a3c834aef570f55950a1", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVAPGLVLGLVLPLILWADRSAGIGFRFASYINNDMVLQKEPAGAVIWGFGTPGATVTVTLRQGQETIMKKVTSVKAHSDTWMVVLDPMKPGGPFEVMAQQTLEKINFTLRVHDVLFGDVWLCSGQSNMQMTVLQIFNATRELSNTAAYQSVRILSVSPIQAEQELEDLVAVDLQWSKPTSENLGHGYFKYMSAVCWLFGRHLYDTLQYPIGLIASSWGGTPIEAWSSGRSLKACGVPKQGSIPYDSVTGPSKHSVLWNAMIHPLCNMTLKGVVWYQGESNINYNTDLYNCTFPALIEDWRETFHRGSQGQTERFFPFGLVQLSSDLSKKSSDDGFPQIRWHQTADFGYVPNPKMPNTFMAVAMDLCDRDSPFGSIHPRDKQTVAYRLHLGARALAYGEKNLTFEGPLPEKIELLAHKGLLNLTYYQQIQVQKKDNKIFEISCCSDHRCKWLPASMNTVSTQSLTLAIDSCHGTVVALRYAWTTWPCEYKQCPLYHPSSALPAPPFIAFITDQGPGHQSNVAK", "sequence_length": 523, "sequence_origin": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem33-pom33-pf03661.yaml" } ], "pfam_ids": [ "PF03661" ], "protein_name": "Transmembrane protein 33", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADTTPNGPQGAGAVQFMMTNKLDTAMWLSRLFTVYCSALFVLPLLGLHEAASFYQRALLANALTSALRLHQRLPHFQLSRAFLAQALLEDSCHYLLYSLIFVNSYPVTMSIFPVLLFSLLHAATYTKKVLDAKGSNSLPLLRSFLDKLSTNQQNILKFIACNEIFLMPATVFMLFSGQGSLLQPFIYYRFLTLRYSSRRNPYCRNLFNELRIVVEHIIMKPSCPLFVRRLCLQSIAFISRLAPTVA", "sequence_length": 247, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aa1b286abfb6e17d7fff6e12b247fb91ff03978710088fc1d7295186c5faa771", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CR67.json", "taxon_id": "10090", "uniprot_accession": "Q9CR67", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { 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"Transmembrane protein 33 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVEIVEEPDDHQSSSTGAGSSGSSSAPPPPPPPAYSSISQYVSANTMECVLFAARVLTVFFALNYMIPFIGLVPAHSAYYKIFAASAATFALRLHTRIQGQFALNAQFIQRLIIEDSFHYLVYSVVFLMAAPVSMAALPVTIYAALHACTFMTKILRETGHTSSIIPKLEQFTAHQTQNALGIIACSEIFLVPLLVSLIFSGKGSLLLPFAYYRFLSLRYASRRNPSTRQAFAQMRGSLQNVAMSSSCPRPISSLIYRAIDFISARAPPVM", "sequence_length": 271, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a3a19e35f459d576c531501cb6f21f91f42ccfb44e1834e27a4477b81a80f768", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9XWV0.json", "taxon_id": "6239", "uniprot_accession": "Q9XWV0", "uniprot_release": "2026_03" } ], "pfam_id": "PF03661", "short_name": "TMEM33_Pom33", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 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"data/traits/sequence/domain/interpro/gator1-complex-protein-nprl3-c-terminal-hth-domain-ipr056603.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056603", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gator1-complex-protein-nprl3-c-terminal-hth-domain-ipr056603.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-nprl3-pf24064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-nprl3-pf24064.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/npr3-pf03666.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03666", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/npr3-pf03666.yaml" } ], "pfam_ids": [ "PF03666", "PF24064" ], "protein_name": "Nitrogen permease regulator 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDECLPNSCLLGVHLVISTHSGPQIVYHYPPSNTAFLTNNPTKHQHLYGNHANLNKNTSTNKEEKLFNSGSTKTASQIALNESAKSYNTAITPSMTNTNTNNVTLPPTRSHANTVGSQSSIPAATNGVGYRKTDIEDTSRTFQYQETESETSSSGLSDSELSTDYLDISSDSFSISSSLSSSSLSSSPSSSSSSSPPQDGLSRTNSSFQSTDSMSPTSPQMIMENDSISVAESYLDSGTNNKSRAASKRSQNFFHKLSTKKSTDSKTHSPVRKLKSKPSQSTKKGNKLLKNTSNETDGNAFTGSCSISSKKSLSSTGEHNQELRNSSLNDTPGQSPHHYHHRYHHYHKNAATSQRNSHTQYDVEEEDMEVSAMLQDGKISMNEIFFEEENFQDINKILEFDNDFVAEFCSPEREMCNTRFEFTVDNFCFLGLPIHVDSQGRWRKSKHKNKTRSKRSSSTTTNISRKKSIASKISSLSENTLKKVNSGEADTVYDSNIGHEASTDTPNLRINTDVSGNEFEREKEDLGKNMNMFHVCFVMNPHLIEYNKRIDDMYQFVVTRLSLLLRYVQSKTSYISSECHIILKEKERVLKHSKTYQSIRGAGNKGKYLYQRILAKSSLARALTECVDKIQRNEIACLEINDDKVISLQIPIQNEFEKMPNFKLQPVLRGSYLTSILNMKFLEKSSLRIESQNRQNDQAQFSDTNNNIYRFGNNINSTGHCGAANVDDGDDNESNYYCDDNDDLLNYALLLLDEPNNIISSLETFSYQDDIGTIILKHLVRNIQPNIPLRSYRYLITDLLDNPSSLDDLTTETNSLESSILRSCALHLMYWRHARIVIPLSSKYTYIVSPLAPIQGYTIDDYKSTSQNDGNVKKMDDRENNKSGSDRVPLIYQNSMLFRSKFPSLPSLPIFLSLLSTDKPQAYSNIIPSREHKPVYLNALAWLIQYGYVTQLLTFINIRVDKHIKMAVDEDLEKEGFRKTNTARRPSMDYKKTDKKLDDEDGQSRDANASEACSGKNEGMQSNDNNKDVDEKDNENDSRVDDRDDNEIAIADEEEILHFEYDDPEMQHDYTIILEPERATAIEKRWLYRCIYGQPSDIQILFNKLLKYFNGKVPMELVIIKEEISRHDLKKLLNALDKYLIEIHHW", "sequence_length": 1146, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "290e8273012f5fc8ce2689d1a563540ba8c4a86596c5d54bd6d53780230b08fc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38742.json", "taxon_id": "559292", "uniprot_accession": "P38742", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gator1-complex-protein-nprl3-c-terminal-hth-domain-ipr056603.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056603", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gator1-complex-protein-nprl3-c-terminal-hth-domain-ipr056603.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-nprl3-pf24064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-nprl3-pf24064.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/npr3-pf03666.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03666", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/npr3-pf03666.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q12980", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03666", "PF24064" ], "protein_name": "GATOR1 complex protein NPRL3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c47bfe281f08b1d952380197bdcd2c2c795f3faeaa0af0a879cf8d85aec0b530", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRDNTSPISVILVSSGSRGNKLLFRYPFQRSQEHPASQTSKPRSRYAASNTGDHADEQDGDSRFSDVILATILATKSEMCGQKFELKIDNVRFVGHPTLLQHALGQISKTDPSPKREAPTMILFNVVFALRANADPSVINCLHNLSRRIATVLQHEERRCQYLTREAKLILALQDEVSAMADGNEGPQSPFHHILPKCKLARDLKEAYDSLCTSGVVRLHINSWLEVSFCLPHKIHYAASSLIPPEAIERSLKAIRPYHALLLLSDEKSLLGELPIDCSPALVRVIKTTSAVKNLQQLAQDADLALLQVFQLAAHLVYWGKAIIIYPLCENNVYMLSPNASVCLYSPLAEQFSHQFPSHDLPSVLAKFSLPVSLSEFRNPLAPAVQETQLIQMVVWMLQRRLLIQLHTYVCLMASPSEEEPRPREDDVPFTARVGGRSLSTPNALSFGSPTSSDDMTLTSPSMDNSSAELLPSGDSPLNQRMTENLLASLSEHERAAILSVPAAQNPEDLRMFARLLHYFRGRHHLEEIMYNENTRRSQLLMLFDKFRSVLVVTTHEDPVIAVFQALLP", "sequence_length": 569, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c47bfe281f08b1d952380197bdcd2c2c795f3faeaa0af0a879cf8d85aec0b530", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12980.json", "taxon_id": "9606", "uniprot_accession": "Q12980", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/npr3-pf03666.yaml" } ], "pfam_ids": [ "PF03666", "PF24064" ], "protein_name": "GATOR complex protein NPRL3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAKEVDFERESHLHAVMCFLTGQSGEKIVSIYPHRKPATKAPSKDPQPSSSNPGQCVKPVLTSVKDPSYGFGRVDTEFDMSLGMLAYVFKTQEIACNDGFDMKINNQRFVAYPKTWKARGESTNYQISIVFALKNGCEQHTASAYQTLSNKIAVSLVMLQNYFGFLEREDKWADNAEEPNKDHPLEEFAKTSFIVQPLAEMFEEVRNRGNIHKYLINFVELGFCDEAHALTKLNVVPKGRQEIDEIVRKMKPYHGILLLEDVWPTPDANPIVAKLLSHCSPDRSILDMSTASGIPIFEVFMIIRHLLQWTRAILIYPLCNTNIYTSATSPQPLDKMAEKFTAQFGNTIHLAAGLAHFNPPKTLDTFIRKNLPLHEQGVRAKLVVALLRHQMLMQLHQFYYILKPYSIAILPEPKEPCPAEFTKIIEESTLPNDVKGVVADICAEMLETTSYASVKRTLSLFVKVAPMMDGNHHLEEIKYKNNLDRTEIEGVFVSFKLVIATFRRPDFVAE", "sequence_length": 511, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a68b6d1d7dd546d1dd3b6c19c3280f47d6d23dcadbdd7efa7d1a638a8808d74e", "sequence_version": 1, 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"MLDLEVVPERSLGNEQWEFTLGMPLAQAVAILQKHCRIIRNVQVLYSEQSPLSHDLILNLTQDGITLLFDAFNQRLKVIEVCELTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSTEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSLQDTKAPVMPLSCFLGNVYAESVDVLRDGTGPSGLRLRLLAAGCGPGVLADAKMRVFERAVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIPLAIKKENAGGQTEICTTYSKWDSIQELLGHPVEKPVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPRPGAHLRTAELP", "sequence_length": 422, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "43a512d97b68db52d94744b211b57e024b25fbab5e2a4a30de526769a34711b4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q922R1.json", "taxon_id": "10090", "uniprot_accession": "Q922R1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/phaf1-pf03676.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03676", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/phaf1-pf03676.yaml" } ], "pfam_ids": [ "PF03676" ], "protein_name": "Phagosome assembly factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDLEVVPERSLGNEQWEFTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLMFDAFNQRLKVIEVCDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSLQDTKAPMMPLSCFLGNVYAESVDVLRDGTGPAGLRLRLLAAGCGPGLLADAKMRVFERSVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIPLAIKKENADGQTETCTTYSKWDNIQELLGHPVEKPVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPRPGSHLRTAELP", "sequence_length": 422, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "18a9e74eadcd090181e5bbdca110e173a9793a34a9d341fd883dfc6d90f9dc11", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BSU1.json", "taxon_id": "9606", "uniprot_accession": "Q9BSU1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/phaf1-pf03676.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03676", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/phaf1-pf03676.yaml" } ], "pfam_ids": [ "PF03676" ], "protein_name": "PHAF1 protein At3g51130", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKDYSKIGDKLVMQRPRRRLEGTAMGATVFDLRPGVGIGPFSIGMPICEAFAQIEQQPNIYDVVHVKYYDEDPLKLDVVISFPDHGFHLRFDPWSQRLRLVEIFDVKRLQMRYATSMIGGPSTLATFVAVYALFGPTFPGIYDKERGIYSLFYPGLSFEFPIPNQYTDCCHDGEAALPLEFPDGTTPVTCRVSIYDNSSDKKVGVGKLMDRASVPPLPPGSLYMEEVHVKPGKELYFTVGGQHMPFGASPQDVWTELGRPCGIHPKQVDQMVIHSASDPRPKTTICGDYFYNYFTRGLDILFDGETHKVKKFVLHTNYPGHADFNSYIKCNFVISAGADAAEANRSGNKITPSTNWDQVKEILGECGPAAIQTQGSTSNPFGSTYVYGYQNVAFEVMKNGHIATITLFQS", "sequence_length": 410, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "515b73870983f0b5200cf0923ee583ba68d17594846e2eeaa562b2058800410d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SD33.json", "taxon_id": "3702", "uniprot_accession": "Q9SD33", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/phaf1-pf03676.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03676", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/phaf1-pf03676.yaml" } ], "pfam_ids": [ "PF03676" ], "protein_name": "PHAF1 protein CG7083", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDLEIVPEISLGCDAWEFVLGMHFSQAIAIIQSQVGIIKGVQVLYSDTTPLGVDIIINLPQDGVRLIFDPVSQRLKTIEVFNMKLVKLRYFGVYFNSPEVLPSIEQIEHSFGATHPGVYDAAKQLFALHFRGLSFYFPVDSKLHSGYAHGLSSLVFLNGASPVVSKMSLYAGSNVLENRVPSLPLSCYHRQMYLESATVLRTAFGHTKGLKLKLFTEGSGRALEPRRQCFTRELLFGDSCEDVATSLGAPNRIFFKSEDKMKIHSSSVNRQAQSKRSDIFFNYFTLGIDVLFDARTQTCKKFILHTNYPGHFNFNMYHRCEFQFLLQADHPSMSDSGHDLVTPTKQEHVNITAYTKWDAISSALATSERPVVLHRASSTNTANPFGSTFCYGYQDLIFEVMPNSHIASVTLYNTAPPRQPAHSWQQHKMQDIRLTVA", "sequence_length": 438, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b7aee8bcb45035bf0df44b26e78ec94babeb6816c4a28b186f4c7726764ccc39", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VSH9.json", "taxon_id": "7227", "uniprot_accession": "Q9VSH9", "uniprot_release": "2026_03" } ], "pfam_id": "PF03676", "short_name": "PHAF1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/myg1-exonuc-pf03690.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03690", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/myg1-exonuc-pf03690.yaml" } ], "pfam_ids": [ "PF03690" ], "protein_name": "MYG1 protein C27H6.8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSLIGTHSGKFHCDEAFACFMLKQLPQFKDHSILRTRDAAQLEKCDIIVDVGGIFDHSKQRYDHHQRGFTDTMRTLEKLNFDTKLSSAGLVYAHYGREVINQILGGNVSSSMIDLFYHRLYEQFVESIDAIDNGISQYDGVPRYHSSGNLSSRTGQFNSHWNEPENDADERFQQAMQFIGEEFSRSVKYLANVWWPAREIIEAAVDKRFEIDASGRIILIENGGCPWKEHFFDIEVEKNIADDNITYILFSDSTNASWRVQAIPVDKMSSFENRMPLPAAWRGLRDDDLSKESGIPGGVFVHISGFIGGNLTREGAIAMARKALEIGEENPVKKAKLGN", "sequence_length": 340, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fa8fe7d5b7e191dd0d16fe5a882a559e2ee5f11aef8f746010ff3186b60e5e2b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O17606.json", "taxon_id": "6239", "uniprot_accession": "O17606", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/myg1-exonuc-pf03690.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03690", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/myg1-exonuc-pf03690.yaml" } ], "pfam_ids": [ "PF03690" ], "protein_name": "MYG1 protein YER156C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSVKRVKLNSKMSKQICTHSGSFHADESLAVYMLRLLPEFKDAKLVRSRNPKDWEASDILVDVGAQYDGVKFFDHHQRGFFETFNEKYKTKLSSAGLIFKHYGRDIIKTILNNKVSSSDLDLLYDKVYKQFVEALDANDNGISKYTIPKDSNLEPNFRDNAISIPGIISGMNPNWNEDTSDESFDRCFARASEFIGGVFVTLVRGYGQSWLPAKALVAQAIDERMDVDKSGKIIVLPQFCPWKEHLYELEREKNIEKQIEFVLFTDSSGAWRVSTVPINSTSFQFRRGLPEPLRGLRDEELSTKSGVPGCIFIHAAGFIGGAKSKEAVYELAKMSLA", "sequence_length": 338, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "91e7bc4305ea28adcd8b7208e0a3bbde0f2aebd9e02450157d6a4231afbb7090", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40093.json", "taxon_id": "559292", "uniprot_accession": "P40093", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mitochondrial-rna-metabolic-process-go0000959.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000959", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitochondrial-rna-metabolic-process-go0000959.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/myg1-exonuc-pf03690.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03690", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/myg1-exonuc-pf03690.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9HB07", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03690" ], "protein_name": "MYG1 exonuclease", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f784ed71e97085f12302a54a3951fa160105d9049f999461fabe9acaf8306399", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGHRFLRGLLTLLLPPPPLYTRHRMLGPESVPPPKRSRSKLMAPPRIGTHNGTFHCDEALACALLRLLPEYRDAEIVRTRDPEKLASCDIVVDVGGEYDPRRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDSMVGTLYDKMYENFVEEVDAVDNGISQWAEGEPRYALTTTLSARVARLNPTWNHPDQDTEAGFKRAMDLVQEEFLQRLDFYQHSWLPARALVEEALAQRFQVDPSGEIVELAKGACPWKEHLYHLESGLSPPVAIFFVIYTDQAGQWRIQCVPKEPHSFQSRLPLPEPWRGLRDEALDQVSGIPGCIFVHASGFIGGHRTREGALSMARATLAQRSYLPQIS", "sequence_length": 376, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f784ed71e97085f12302a54a3951fa160105d9049f999461fabe9acaf8306399", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HB07.json", "taxon_id": "9606", "uniprot_accession": "Q9HB07", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mitochondrial-rna-metabolic-process-go0000959.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000959", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitochondrial-rna-metabolic-process-go0000959.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/myg1-exonuc-pf03690.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03690", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/myg1-exonuc-pf03690.yaml" } ], "pfam_ids": [ "PF03690" ], "protein_name": "MYG1 exonuclease", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGRRFLRGILTLPLRSVLQAQHRMLGSEQDPPAKRPRNNLMAPPRIGTHNGTFHCDEALACALLRLLPEYANAEIVRTRDPEKLASCDIVVDVGGEYNPQSHRYDHHQRTFTETMSSLCPGKPWQTKLSSAGLVYLHFGRKLLAQLLGTSEEDSVVDTIYDKMYENFVEEVDAVDNGISQWAEGEPRYAMTTTLSARVARLNPTWNQPNQDTEAGFRRAMDLVQEEFLQRLNFYQHSWLPARALVEEALAQRFKVDSSGEIVELAKGGCPWKEHLYHLESELSPKVAITFVIYTDQAGQWRVQCVPKEPHSFQSRLPLPEPWRGLRDKALDQVSGIPGCIFVHASGFIGGHHTREGALNMARATLAQRPAPVPLANAVVQ", "sequence_length": 380, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8f2e7fbc532ed91d7decc2f978b0096cb048072e927d5429cf251581d3afcae7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JK81.json", "taxon_id": "10090", "uniprot_accession": "Q9JK81", "uniprot_release": "2026_03" } ], "pfam_id": "PF03690", "short_name": "MYG1_exonuc", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/ycgn-family-cysteine-cluster-protein-nf003498.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF003498", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/ycgn-family-cysteine-cluster-protein-nf003498.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/ycgn-family-cysteine-cluster-protein-nf003501.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF003501", "section": "canonical_examples", "url": 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"MALYLGVMSGTSLDGLDIALVEQGEQLELLATHYLPMPPDLRQDLLALCSSGPDEIARAALAENRWASLAGEGIRQLLARQGLKPEAVRAIGSHGQTIRHEPARGFTVQIGNPALLAELTGISVVADFRRRDVAAGGQGAPLVPAFHETLFSQLGRRLAILNVGGFSNLSLIEQDKPVHGFDCGPGNVLLDAWIEREHGHPYDADGAWAASGVAQPGLLSALMADPFFAGSGPKSTGREVFNLPWLDRHLANLPAYRAQDVQATLLELTARSIIDSLGKAQQGTEALLVCGGGARNGALMARLGQLLPAARVASTGAYGVDPDWVEAMAFAWLAHCCLEGIAANRPSVTAAKGLRVLGAIYPA", "sequence_length": 363, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0f6fe5b1e6f38fecd31027868b574fce9b3a41804ab02e46603f3879760b6b4f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q88QQ4.json", "taxon_id": "160488", "uniprot_accession": "Q88QQ4", "uniprot_release": "2026_03" } ], "pfam_id": "PF03702", "short_name": "AnmK", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhodobacter capsulatus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bph-2-pf03703.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03703", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bph-2-pf03703.yaml" } ], "pfam_ids": [ "PF03703" ], "protein_name": "Uncharacterized 23.7 kDa protein in puhA 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDHDFDFEPQPGIPAPLPEGEEILWQGKPDMWMLARDAFKIRWMTGIMLFVAAWRTALYWHEEGARVALPTAAVLFLLMAAVVYGLMLLLAFAQARAAIYTITSARVILRIGAALQVTFTIPFTVIESMSLAKLGRKGFGTIALQNRSDMRLSYGVLWPHARPWHFRVPQAAFRCIPEAEKVARILSEAAQAKLNEPQVVAAPKAGAALAVAE", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2da882a6ea3d144dffe97e4f5fe485f2fac7e4ca6925925001c61d104e4bb8fb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P26161.json", "taxon_id": "1061", "uniprot_accession": "P26161", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ydbs-like-ph-domain-ipr005182.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005182", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ydbs-like-ph-domain-ipr005182.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bph-2-pf03703.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03703", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bph-2-pf03703.yaml" } ], "pfam_ids": [ "PF03703" ], "protein_name": "UPF0699 transmembrane protein YdbS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MREQPKNQISPDGLKVWRLQEIIISAVCLLIVIAVAVLSYYFHWPYWISGVLGAVWLLGSIVTVFIIPKVRHKVWRYEVHEHEIDIQSGIFVVTRVIVPMVRVQHVDTSQGPLLKKYNLATVKISTAATVHSIPALEMEEADRLRDSISRLARVTDDDV", "sequence_length": 159, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "19517a4313a5be645eaa2e1861f2d1750d00ba5c0f2fa1dd751e34661f1ee676", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P96615.json", "taxon_id": "224308", "uniprot_accession": "P96615", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ydbs-like-ph-domain-ipr005182.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005182", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ydbs-like-ph-domain-ipr005182.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bph-2-pf03703.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03703", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bph-2-pf03703.yaml" } ], "pfam_ids": [ "PF03703" ], "protein_name": "UPF0699 transmembrane protein YdbT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMSEPKRLHPVAVILNLCHTIIQTIKNIILPFFFVYIVNSNHTVRFYGAIALGVLFIWLVAASIIKWRRFTYRIEDDEFRIEEGLFVTKKRYISIDRIQTMNTSAGLVQQIFKLVKLQIETAGGGKEAEAVLSAISVEEAERIKEAVFKKKAQRRENELDEERLEAEEELDPSVEVQEHYRMNAKELLMAASTSGGIGVIISAVFALISQLDEVLPMDWLFDKFSFLQHASIGIYAVLIFIGLFIAWIFSIAGMMFRYANFQIIKKEQELVISRGIIEKHQVTIPLRKIQAIKIKENIIRQLFGFVTVSIVSAGGGDREKEEGALTILFPMIHKKKLPHMLRTFTPEYTLEENCRRLPRRALKRYLFRSVIFSLFLIIPLCIFFQPWGYLSVILLPIELLFGYLAYKEAAWTINGDRLQLTSRFIGRTTAIVLKKRMQVCKFSQSYFQKKGRLYTISTSVKSSSHMEELTVRDVGEEDAAFILKWYSYEKADG", "sequence_length": 493, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cce2e6c258a00e1f5d081554d2a80fda55aa7680a667b4d0003e1b728d4ecff8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P96616.json", "taxon_id": "224308", "uniprot_accession": "P96616", "uniprot_release": "2026_03" } ], "pfam_id": "PF03703", "short_name": "bPH_2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/aminoacyltransferase-activity-go0016755.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/aminoacyltransferase-activity-go0016755.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/phosphatidylglycerol-lysyltransferase-activity-go0050071.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/phosphatidylglycerol-lysyltransferase-activity-go0050071.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/bifunctional-lysylphosphatidylglycerol-flippase-synthetase-mprf-nf033480.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF033480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/bifunctional-lysylphosphatidylglycerol-flippase-synthetase-mprf-nf033480.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/phosphatidylglycerol-lysyltransferase-c-terminal-ipr024320.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024320", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/phosphatidylglycerol-lysyltransferase-c-terminal-ipr024320.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/lpg-synthase-c-pf09924.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09924", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/lpg-synthase-c-pf09924.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/lpg-synthase-tm-pf03706.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03706", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/lpg-synthase-tm-pf03706.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:C0H3X7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03706", "PF09924" ], "protein_name": "Phosphatidylglycerol lysyltransferase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "bff0d4a4e0a419ede095a97d85aa3cc268e062d5d041228814b663355cdef014", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLIKKNALSILKIVFPIAVLLFVIYQSKKELTNLSFKRTLMVINGLERTDLFMLVLIGLLAVAAMSLYDYVLKYSLRLSITNGKVFRVSWIANSFNNVLGFGGLAGVGLRMMFYKEHTKDHKALVKGIAWLTSSMLLGLSVFSIFVAARVLPVDEVIHEKPWLWAVVIGFALILPLSLAVSKIKDRKAGDEENADKVKNPIFAYIGASVVEWLMAGTVIYFALFAMGIHADIRYVFGVFVIAAIGGMISLVPGGFGSFDLLFLLGMEQLGYHQEAIVTSIVLYRLAYSFIPFILGLFFAAGDLTENTMKRLETNPRIAPAIETTNVLLVVQRAVLVRILQGSLSLIVFVAGLIVLASVSLPIDRLTVIPHIPRPALLLFNGLSLSSALILLILPIELYKRTKRSYTMAITALVGGFVFSFLKGLNISAIFVLPMIIVLLVLLKKQFVREQASYTLGQLIFAVALFTVALFNYNLIAGFIWDRMKKVLRHEYFVHSTSHITHATIMAIIIVPLFFLIFTVVYHKRTKPIGEKADPERLAAFLNEKGGNALSHLGFLGDKRFYFSSDGNALLLFGKIARRLVVLGDPSGQRESFPLVLEEFLNEAHQKGFSVLFYQIEREDMALYHDFGYNFFKLGEEAYVDLNTFTLTGKKKAGLRAINNRFEREEYTFHVDHPPFSDAFLEELKQISDEWLGSKKEKGFSLGFFDPSYLQKAPIAYMKNAEGEIVAFANVMPMYQEGEISVDLMRYRGDAPNGIMDALFIRMFLWAKEEGCTSFNMGMAPLANVGTAFTSFWSERFAAVIFNNVRYMYSFSGLRAFKEKYKPEWRGKYLAYRKNRSLSVTMFLVTRLIGKSKKDSV", "sequence_length": 856, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "bff0d4a4e0a419ede095a97d85aa3cc268e062d5d041228814b663355cdef014", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0H3X7.json", "taxon_id": "224308", "uniprot_accession": "C0H3X7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/lpg-synthase-tm-pf03706.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03706", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/lpg-synthase-tm-pf03706.yaml" } ], "pfam_ids": [ "PF03706" ], "protein_name": "Inner membrane protein YbhN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKSHPRWRLAKKILTWLFFIAVIVLLVVYAKKVDWEEVWKVIRDYNRVALLSAVGLVVVSYLIYGCYDLLARFYCGHKLAKRQVMLVSFICYAFNLTLSTWVGGIGMRYRLYSRLGLPGSTITRIFSLSITTNWLGYILLAGIIFTAGVVELPDHWYVDQTTLRILGIGLLMIIAVYLWFCAFAKHRHMTIKGQKLVLPSWKFALAQMLISSVNWMVMGAIIWLLLGQSVNYFFVLGVLLVSSIAGVIVHIPAGIGVLEAVFIALLAGEHTSKGTIIAALLAYRVLYYFIPLLLALICYLLLESQAKKLRAKNEAAM", "sequence_length": 318, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4a56433fa7de34bffc6aae3de4af961cc301da056e751d18aba243830fa74229", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75770.json", "taxon_id": "83333", "uniprot_accession": "P75770", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/flippase-like-domain-containing-protein-tigr00374.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00374", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/flippase-like-domain-containing-protein-tigr00374.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/lpg-synthase-tm-pf03706.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03706", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/lpg-synthase-tm-pf03706.yaml" } ], "pfam_ids": [ "PF03706" ], "protein_name": "UPF0104 membrane protein MJ1078", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFINSLVPAKLGDVYRGYLLKKKTNESISLGVGTVFIERVFDLVAMISLLFISAYLSFKSDIPKEILYSIKWGVIIILFLIILIFGFLIVNSKINLKNKKLEAILMNFEKGLKAVKLNTLPLLITLSFTGWFIEGLTVYFIFLSLNLNLEILFGVFSDLASSLLTAIPLTPSGLGVVEYALIYILKLKNIDYSGAFAVLILYRLISYFSIVLFGAIMFYIVERNILKEPKNEKY", "sequence_length": 234, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fe64922c0d4d36e8295021bb61ab1558f104f9298eda641aaca917fac338060a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58478.json", "taxon_id": "243232", "uniprot_accession": "Q58478", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/flippase-like-domain-containing-protein-tigr00374.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00374", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/flippase-like-domain-containing-protein-tigr00374.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/lpg-synthase-tm-pf03706.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03706", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/lpg-synthase-tm-pf03706.yaml" } ], "pfam_ids": [ "PF03706" ], "protein_name": "UPF0104 membrane protein MJ1595", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMKIKITKSTILLIISFLFILAIMAYIGLDKIIKVLINTNPEYVILAFILQILVSVILSARWKFIIKILGYSANFKNIFLLVLMGLFINNITPSMRGGGEAFRAYYLSKLEEIPKGLAFSTVVVERVLDTAIFLFFTLFVIGYFVVTGFKYLEYLILSWIFLFSLTAIIIYLIANKGLLIKTVTKISKFICKYCSYNYDETKILQSIEEFYNSMKFFKNKRGWEVVVAIFLSVMRYIFDILKLWLLFLSLSYVVSVICVSAVYLITLLSGVLSITPSGFGTADTVMILSFSAFNIPPSVAAAVTLLDRLVSYILPTILGYIAMLIIKREIDKKKGK", "sequence_length": 336, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d26b38c4480afe7a2a79b832c981226419379da3e4c1fc4c0a6baa5590e60efc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58990.json", "taxon_id": "243232", "uniprot_accession": "Q58990", "uniprot_release": "2026_03" } ], "pfam_id": "PF03706", "short_name": "LPG_synthase_TM", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf305-pf03713.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03713", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf305-pf03713.yaml" } ], "pfam_ids": [ "PF03713" ], "protein_name": "Uncharacterized protein L153", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNSMILLMVIASFVAGYLSTMNLWANSIGDIRLHLNDFYMVLLMVGWMIVMCYILMKSHMGITKTQLIITITIIIIIVYAIRTQAFIDDKQYLNGMIPHHSMAITMSKWIVNRTKDPRIKQLATDIIISQQNEINEMNSILDERKLQNKVF", "sequence_length": 152, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "644382ce888743bc8b66dfd9c5ea6bee64d86c8fb5a217bfc00cc4b104515e81", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UPL7.json", "taxon_id": "212035", "uniprot_accession": "Q5UPL7", "uniprot_release": "2026_03" } ], "pfam_id": "PF03713", "short_name": "DUF305", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/noc1p-noc2p-complex-go0030690.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030690", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/noc1p-noc2p-complex-go0030690.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/noc2p-noc3p-complex-go0030691.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030691", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/noc2p-noc3p-complex-go0030691.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/noc2-pf03715.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/noc2-pf03715.yaml" } ], "pfam_ids": [ "PF03715" ], "protein_name": "Nucleolar complex protein 2 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLLKKPAGLKKRKVISKRIKIEKKPSSEDEGSSDEEVPKLDGEGSLDGSEDEDDGTVTVEKGGVKKHKLDLEKLKQSDPEFFKFLQQEDADLLNMEDDGDDDEDDDEDDEDEEEEESDDDEDDEEDDDKTKIKKIRKPKIKSDNSGRLIVDSNVYSYLQQVLVLDDETSTPTNPSDVRMAVDVFVACVARVGADIEAPKYVINEQSIFEAVVRMCFQAMPDILKRLLKAKPEGDKVLFSKTAIKKYQTYVRTYLHAMIVFLNEVQTTEVLIATIKAMTRLVDLYAHFSRMSKLLIKAVVRIWSRKTLECRLPAFVCMNLLVKNYPQHFVPLYKTAYVAFVANSKIVTNETWPLLQFMHRTFAELTILNPEQAYKYAFVYIRQTAVHLRNAMISKGRKDLIFSIYNWQMMQCMYMWVRVIAKAHSVNGAEQIGELVYPLIQVIVGIFKLCNAPTFLPLRLHCCQLLIQLQASCTNYIPILQVSCDCLEELARELKSKPKPVKGAVKLPDIECTLKCSSQFSDLPQWRKVISEHVFRTMMQSAHLLASQAAFPDVVLPINHRISAILETMKNGDHAHLFRGFQTKLKEHSRFVLDVLARKSVDINDEMQVRAVRFDLNNPDSPIKTFYRQWEKVWKMKERSAVENSKKDDKKKKKEEEAAAAKKRKPNETVEDEDDVKPEVSKAKRKRIKIGAAAKKADASVPDQFADMSMWSDED", "sequence_length": 715, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fddc5cae19ce81242cecc13c3ba502232e216231c15d57f9b44d3e1d88b37b74", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O17580.json", "taxon_id": "6239", "uniprot_accession": "O17580", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/noc1p-noc2p-complex-go0030690.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030690", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/noc1p-noc2p-complex-go0030690.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/noc2p-noc3p-complex-go0030691.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030691", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/noc2p-noc3p-complex-go0030691.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/noc2-pf03715.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/noc2-pf03715.yaml" } ], "pfam_ids": [ "PF03715" ], "protein_name": "Nucleolar complex protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKVSKSTKKFQSKHLKHTLDQRRKEKIQKKRIQGRRGNKTDQEKADAAGTREQQQLKKSAKEEVFKDMSVETFFEKGIEIPKENKKLKKKTTKEQSDEDSSSSEEEEDMGQSMAKLAEKDPEFYKYLEENDKDLLDFAGTNPLDGIDSQDEGEDAERNSNIEEKSEQMELEKEKIELSLKLVRKWKKQLHDSPSLKLLRNIISAFKVAVNLNKEENIEDYKYAITDEKAFHELMFMVLKDVPQAIQKMAPYKIVKGARTLPNGGNVSRVSSIVKSHAGSLLILLNDITNTETAALVLHSVNELMPYLLSYRRILKELIKSIVGVWSTTRELETQIASFAFLINTTKEFKKSMLETTLKTTYSTFIKSCRKTNMRSMPLINFQKNSAAELFGIDEVLGYQVGFEYIRQLAIHLRNTMNATTKKSSKINSAEAYKIVYNWQFCHSLDFWSRVLSFACQPEKENGSESPLRQLIYPLVQVTLGVIRLIPTPQFFPLRFYLIKSLIRLSQNSGVFIPIYPLLSEILTSTAFTKAPKKSPNLAAFDFEHNIKCTQAYLNTKIYQEGLSEQFVDLLGDYFALYCKNIAFPELVTPVIISLRRYIKTSTNVKLNKRLSTVVEKLNQNSTFIQEKRSDVEFGPTNKSEVSRFLNDVAWNKTPLGSYVAVQREVKEEKARLMRESMEEQDKERETEEAKLLNSLESDDDNEDVEMSDA", "sequence_length": 710, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "da024d0aecb849e32935ef83cd38584522188711f301e1d091859ce407b33896", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P39744.json", "taxon_id": "559292", "uniprot_accession": "P39744", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/noc1p-noc2p-complex-go0030690.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030690", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/noc1p-noc2p-complex-go0030690.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/noc2p-noc3p-complex-go0030691.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030691", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/noc2p-noc3p-complex-go0030691.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/noc2-pf03715.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/noc2-pf03715.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q0WVH0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03715" ], "protein_name": "Protein REBELOTE", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8817eddd74e7893cf452730b429d4aec5970074491fc492962d186e6a72b3de8", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGKLGKKARKFAKKNLQSVEKRSRKLKPFIKKKFAKRNERHQAGDKQEKKVEQQPKKRCQEEEFQDIAIDAVFGKDDDEVLRDGDSDSDGYLDELVNETDSDIMKCKVLSRSFLATCCDMVDKEQYVPALVRLLNWYRAACQYGHEPSGIARPNIYYDIEDSETFAKVIIFVLQKADHTFRSILGLSDSSTKEKILKLKNNPKWDSLKPLVKSFFRSTLHLVKQAGDLEIISFTLTQLRVSIVFLAAFPDLLKKLIKISVHLWVTGEETISQQAFLILKDISMVFNSECFDSCLINMYKAFLHDCDIPKANSEQRPFLRDSLVELCSQDVQKSYTKASVSITQLAKLLKMALATKNKEAVEKIHSGEYINCVDLWVNFISANVQDCDLQPLLYTIVQVINGVAQLIIGPRYLLLRVKCIHWLNHLSRTSGIFIPIASLVLDMLEYKTTNDGEKQEQKLEAVSTVKLPKNWLKSQNFQEQCIFSVIELLAVHFAQWSFHISFPDLATIPVMRLKKFHERSTMEGLKRVVKRFIEQVESNIEFVQRKRDDVTFSPNDQQSADTFMQLEKQNANAPYTQYYQSIIDKALGTNKKKKK", "sequence_length": 594, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8817eddd74e7893cf452730b429d4aec5970074491fc492962d186e6a72b3de8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0WVH0.json", "taxon_id": "3702", "uniprot_accession": "Q0WVH0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/noc2p-noc3p-complex-go0030691.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030691", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/noc2p-noc3p-complex-go0030691.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/noc2-pf03715.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/noc2-pf03715.yaml" } ], "pfam_ids": [ "PF03715" ], "protein_name": "Nucleolar complex protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLATKKIKTLGKSKPDLSKKKPAKDAIRKTKPQTTSETKVTPRNPKQKVAEPVKNGKTTKKGFKKSHKEELEGLKDIDPEFYDFLKNNDKKLLDFNLLDTDDDDDEEGDEEDKEDTVTKESKDDEDDEEKYHKPSKDLEVASDESDFEVDEEDDAAAGGIQKITLNLLHQWEQQLGQANISIDIVRKVIQAFNSALASISADGADGGENKHNAAAFKVVGAAAFNGVIQLCVIHLQPAIIRLLGVRPNSSLPLHKHKKWVKVRGCLRYYLTDLIRLVEQVSSPNILGVLLKHLHQMAGMVVPFSALGKTILKRLVVLWSTGDETVRVLAFLCILKITRKQQATMLNHVLKAMYLAYVRNSKFVSPNTLPGINFMRRSLVEMFALDLNVSYQHVFLYIRQLAIHLRNAVILKKKDSFQAVYNWQFINSLRLWADLLGASANKPQLQPLIYPLVTIATGVIRLIPTAQYFPLRFHCLQTLISLAKETNTYVPVLPLIVEVLKSNTFNRKHSAVSMKPVQFTCVLRLNKGQLAENGFRDEVIEQVCGLLLEYLAHESTSLAFSDLVVPTVMAIKTYLKECRNANYARKLKQLLEKIQESARFIEQQRGKSSVTFDIKDAQAVAAWEQQLRLKRTPLDVYYASWLKTHETKKRRQAAHTDEINADYDVPKLKKLPVKTGVPVRNENGEVELFPSDSEDEGDDGLHLGSDDDDDEDVQEEEEVEVEHPKAKKAKKEKPEKQKPRPATVEDDYDEAGGAVDIVKDLDLNEW", "sequence_length": 766, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fe6075ee17040489d8e8a68e69c8a6c4d6a654d46671b78c1deb5cc9b848285c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VIF0.json", "taxon_id": "7227", "uniprot_accession": "Q9VIF0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/noc1p-noc2p-complex-go0030690.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030690", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/noc1p-noc2p-complex-go0030690.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/noc2p-noc3p-complex-go0030691.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030691", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/noc2p-noc3p-complex-go0030691.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/noc2-pf03715.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/noc2-pf03715.yaml" } ], "pfam_ids": [ "PF03715" ], "protein_name": "Nucleolar complex protein 2 homolog", "registry_status": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/noc2-pf03715.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/noc2-pf03715.yaml" } ], "pfam_ids": [ "PF03715" ], "protein_name": "Nucleolar complex protein 2 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"9606", "uniprot_accession": "Q9Y3T9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/noc1p-noc2p-complex-go0030690.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030690", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/noc1p-noc2p-complex-go0030690.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/noc2p-noc3p-complex-go0030691.yaml", "qualification_status": 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"https://rest.uniprot.org/uniprotkb/Q9ZPV5.json", "taxon_id": "3702", "uniprot_accession": "Q9ZPV5", "uniprot_release": "2026_03" } ], "pfam_id": "PF03715", "short_name": "Noc2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/heat-shock-protein-hslj-nf007766.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007766", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/heat-shock-protein-hslj-nf007766.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/meta-pf03724.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/hslj-like-superfamily-ipr038670.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038670", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/hslj-like-superfamily-ipr038670.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-40-128-270-2-40-128-270.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.40.128.270", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-40-128-270-2-40-128-270.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P52644", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03724" ], "protein_name": "Heat shock protein HslJ", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3a5a8e4b1c7257c0b792a3be72cdb7f920f4a886d0cb7a261944b68e1b16811f", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKKVAAFVALSLLMAGCVSNDKIAVTPEQLQHHRFVLESVNGKPVTSDKNPPEISFGEKMMISGSMCNRFSGEGKLSNGELTAKGLAMTRMMCANPQLNELDNTISEMLKEGAQVDLTANQLTLATAKQTLTYKLADLMN", "sequence_length": 140, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3a5a8e4b1c7257c0b792a3be72cdb7f920f4a886d0cb7a261944b68e1b16811f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P52644.json", "taxon_id": "83333", "uniprot_accession": "P52644", "uniprot_release": "2026_03" } ], "pfam_id": "PF03724", "short_name": "META", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hded-family-acid-resistance-protein-nf007577.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007577", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hded-family-acid-resistance-protein-nf007577.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/protein-of-unknown-function-duf308-membrane-ipr005325.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005325", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/protein-of-unknown-function-duf308-membrane-ipr005325.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf308-pf03729.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03729", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf308-pf03729.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AET5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03729" ], "protein_name": "Protein HdeD", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "72404dfebe5eac4ea41ef06583a6cf5b69b32400354e2bf3c20df918fb1dc920", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03733" ], "protein_name": "Inner membrane protein YccF", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "fdb088ef4ab429dbbc8f9364669a53187fa36f32616fc9a5bde5ca431ae103bf", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEITKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQCISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE", "sequence_length": 148, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "fdb088ef4ab429dbbc8f9364669a53187fa36f32616fc9a5bde5ca431ae103bf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AB12.json", "taxon_id": "83333", "uniprot_accession": "P0AB12", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/vacuole-mitochondrion-membrane-contact-site-go1990816.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990816", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/vacuole-mitochondrion-membrane-contact-site-go1990816.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/calcium-proton-antiporter-activity-go0015369.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015369", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/calcium-proton-antiporter-activity-go0015369.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P42839", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01699", "PF03733" ], "protein_name": "Low affinity vacuolar monovalent cation/H(+) antiporter", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e3bf71faef90cc190880a5f77e2630a7614b2e7b330e54558eb5619590823111", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAKNNHISASGNSTSGDHRLKEEVLTPTTSASTPHRIFSVDDDPKEIQNDIRYLEGLHEGLKFALHANKSKRSVSSQSPIVHSSNNTLHHHEHQQHLPPTLESLSSKSHSVPDLNTATPSSPKRMHSSIRELPHDDNDDEDANDDSRFIIHDSHGHDLLIDEINCQSPSHLENNDQASNASSTESFTLRERQDAINETHPFGIRIWKPALYKKHRSVQRTAAQDIHETQLKTITWEVTCSNVLWFILFGFPIAILFYSAAIVVFLLGGGGLVTNSAKEYSKCLYKLANYFLWPFGKMVYLLQDEQYLQEDKDEGISMQQFYNWVTSYSNRLVFHQSQAKFQQREDHPAPATESSSLMPPANTTATPLNSNHPSYNSIRHEIPHAAAQRRYFGRGKWSWGRVLFYTIFHLVLQPILAVLSLCLWLLVFTIPMSNVLWQIMYHCRRHPLALGFKYVENSSQSHENEITQQQLNKNILLCTFRAAGWHYYKYTVDGTNVIVVNLISIVFFTIFDFYVLKNFLHWKTWFTYESSIFILCLTSTIPLAFYIGQAVASISAQTSMGVGAVINAFFSTIVEIFLYCVALQQKKGLLVEGSMIGSILGAVLLLPGLSMCGGALNRKTQRYNPASAGVSSALLIFSMIVMFVPTVLYEIYGGYSVNCADGANDRDCTFSHPPLKFNRLFTHVIQPMSISCAIVLFCAYIIGLWFTLRTHAKMIWQLPIADPTSTAPEQQEQNSHDAPNWSRSKSTCILLMSTLLYAIIAEILVSCVDAVLEDIPSLNPKFLGLTIFALIPNTTEFLNAISFAIHGNVALSMEIGSAYALQVCLLQIPSLVIYSIFYTWNVKKSMINIRTQMFPLVFPRWDIFGAMTSVFMFTYLYAEGKSNYFKGSMLILLYIIIVVGFYFQGALSE", "sequence_length": 908, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e3bf71faef90cc190880a5f77e2630a7614b2e7b330e54558eb5619590823111", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P42839.json", "taxon_id": "559292", "uniprot_accession": "P42839", "uniprot_release": "2026_03" } ], "pfam_id": "PF03733", "short_name": "YccF", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aquifex aeolicus (strain VF5)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf309-pf03745.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03745", "section": "canonical_examples", "url": 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"section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/ttha0068-like-superfamily-ipr023203.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/ttha0068-like-1-10-3450-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.3450.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ttha0068-like-1-10-3450-10.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P17617", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03745" ], "protein_name": "Uncharacterized protein YpuF", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c44c00fea837640e9067a2e94f242eb003a7428ea2db99e979cf0cf1ed281a2d", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MYPKAYIDYLVEFHATRDYFECHEILEEYWKEDPPKKRKRYWVGFIQLAVALYHHRRQNTAGAKRLMANSIRILQAEHRAVEDLGLDHGRLLELMQSVYEQIETVSAYKSIILPIKDEKLEEACRIECRKKKYTWGQPSALSNIFLIDKHRLRDRTDVIREREKEIERRKKSRD", "sequence_length": 174, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c44c00fea837640e9067a2e94f242eb003a7428ea2db99e979cf0cf1ed281a2d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P17617.json", "taxon_id": "224308", "uniprot_accession": "P17617", "uniprot_release": "2026_03" } ], "pfam_id": "PF03745", "short_name": "DUF309", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus thermophilus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/csm2-iii-a-pf03750.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03750", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/csm2-iii-a-pf03750.yaml" } ], "pfam_ids": [ "PF03750" ], "protein_name": "CRISPR system Cms protein Csm2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAILTDENYVDKAERAISLLEKDNKGNYLLTTSQIRKLLSLCSSLYDRSKERKFDELINDVSYLRVQFVYQAGREIAVKDLIEKAQILEALKEIKDRETLQRFCRYMEALVAYFKFYGGKD", "sequence_length": 121, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e10105a6129c6a2928be361b323283b432329a873716596349eaa3c4292e9522", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0A7HIX1.json", "taxon_id": "1308", "uniprot_accession": "A0A0A7HIX1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterococcus italicus (strain DSM 15952 / CCUG 50447 / LMG 22039 / TP 1.5)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/csm2-iii-a-pf03750.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03750", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/csm2-iii-a-pf03750.yaml" } ], "pfam_ids": [ "PF03750" ], "protein_name": "CRISPR system Cms protein Csm2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELAKTKTGEMIDLNFARKVVEENKRVKDNRGRQEIVLFNGLTTSKLRNLLELINHVYTKVYNSDDTTLSEDVRDELEYLKVKFAYESGREPAVRTFIEKTYVDKLVDVVLKKNTKKIFLDYCKYFEALVAYAKFYRMGD", "sequence_length": 140, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f1cf5840c8383ca814ff75bc63cb7fb35a36b91469de383da7f5fafad64e539c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E6LHV6.json", "taxon_id": "888064", "uniprot_accession": "E6LHV6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/csm2-iii-a-pf03750.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03750", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/csm2-iii-a-pf03750.yaml" } ], "pfam_ids": [ "PF03750" ], "protein_name": "CRISPR system Cms protein Csm2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVIQDDYVKQAEVIRGLPKKKNGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYLDPKDK", "sequence_length": 124, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4da8128a8fe2bee2db2e38fc60da5fe01ae3c663a5ca27f210b1bf8e0009fe5a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WJG1.json", "taxon_id": "83332", "uniprot_accession": "P9WJG1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/crispr-cas-system-associated-protein-csm2-crispr-clustered-regularly-i-cd09647.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09647", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/crispr-cas-system-associated-protein-csm2-crispr-clustered-regularly-i-cd09647.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/type-iii-a-crispr-associated-protein-csm2-tigr01870.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01870", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/type-iii-a-crispr-associated-protein-csm2-tigr01870.yaml" } ], "pfam_ids": [ "PF03750" ], "protein_name": "CRISPR system Cms protein Csm2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKIGKCILNPNEINLILNINSQNANEIIDIAENLAKEFEQIPATKMRDFYDYVLRIDEKNENWYKELVLLKPKLAYNYGKETNRRKKEALEKLAGTFSEIIDKIDNDLNKFKNFKTFFEALVAYHKIYAKSQ", "sequence_length": 133, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0612d721877051a5cef5a2085d3563756e72d5b77b74e818fee1b0b40ae65e40", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q59064.json", "taxon_id": "243232", "uniprot_accession": "Q59064", "uniprot_release": "2026_03" } ], "pfam_id": "PF03750", "short_name": "Csm2_III-A", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF03752", "short_name": "ALF", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/at2g31720-like-pf03754.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03754", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/at2g31720-like-pf03754.yaml" } ], "pfam_ids": [ "PF03754" ], "protein_name": "B3 domain-containing protein At2g31720", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVRGDDQLNGLQGGKRALDILCVATERTVSAFAYEEIGETSTEGDKRRERLRRLRRLINYSLSTTMNSSLSKRLKIDECKNQDPEQNPNRVASSPSSCHLESKRPQKVVSNKPVRNRKPVIVTDEDRTPTEWLIDVMREVNGMDAKLIFVKVLPNSDVDELQTRLMMPWKQILDMDFLNEEELEKIDRHHKKISASDKGADVIVVNSKGLQRKLKLKRWDMTSTSNYVLGLGWNKVVTDNILQRGTRLRIWSFHSPDMLFFAFVLSDPDPAPTECLNLLAKLCEETTCLEALQEANRMSSLVSDTELDLELRL", "sequence_length": 313, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d771930b41fc2ea29cfd83e32c4cd108e847123d8a03f4f1f96f0eb569feb4fc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8RV83.json", "taxon_id": "3702", "uniprot_accession": "Q8RV83", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/at2g31720-like-pf03754.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03754", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/at2g31720-like-pf03754.yaml" } ], "pfam_ids": [ "PF03754" ], "protein_name": "Putative B3 domain-containing protein At3g24850", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSMYHDYDHLTASGKGLWSKFYGLVDAAVLLYDEIQRRGKIVSEEESQKRIFCLFPRRKRSSLVKRQQKLNGGFISFTSSSLIDLNQLPTDSEIEDPQTSDSQMKTLQNSSSEPCTSLVLFDYKTAESEKMEAKTLQNPSSELCSSLVLSDYKMAESEKMETKDPPNPLSLCLTGNTSRKRRAVEERKRTGGFKKAKVAPFPGTARDTPKWLVKVMRDMKEAKDAKLIFEKTLFVTDINPTQNRLSMPFNNLLQNDFLTSVESRIIKEDINNNKKIGVGAILVDQRSVKWGVMLKRWELKKESGKGSWNYNLICGWNDVVEANGLKEGDNISVWSFRCRGVLCFAMEQSSSSLALCLC", "sequence_length": 359, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "507f6fe9e1f9b9c1d30f9c60fa3403f8c153ecdafb5617e102fb47e10bed125b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LRX6.json", "taxon_id": "3702", "uniprot_accession": "Q9LRX6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/at2g31720-like-pf03754.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03754", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/at2g31720-like-pf03754.yaml" } ], "pfam_ids": [ "PF03754" ], "protein_name": "B3 domain-containing protein At2g24670", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIFKKEVSKEDVECVETLLMMSNSKPTREEYNKLQLCILRRNKSSTITTPSTVMESKSHIHDHSLRESPTRRSRNRHDLPPMSPPMEQRKSKKAKRSTDASSSKTREPTPGWLISLMRSKNGGDVEDNSKKIIDKELFQTDVDPHQSRLSIPVSQIVELEFLNHEEKRAIEEDANRVRKEGVDAILVDSHLREFPVNLRLRDMRGILLYNLVAGWNQVVTDCLLEENTNIRLWSFHADDTLYFALVPLYAN", "sequence_length": 251, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "298505a98c9536864aa8a8a8747afb75c3687e87202ba5ec2293df6dce3c4e36", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SJ98.json", "taxon_id": "3702", "uniprot_accession": "Q9SJ98", "uniprot_release": "2026_03" } ], "pfam_id": "PF03754", "short_name": "At2g31720-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 11, "discovery_scanned": true, "example_count": 11, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/prone-domain-ipr005512.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/prone-domain-ipr005512.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/prone-pf03759.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03759", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/prone-pf03759.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/prone.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/prone.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-1-1-20-58-2010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.2010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-1-1-20-58-2010.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A4IJ27", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03759" ], "protein_name": "Rop guanine nucleotide exchange factor 3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b1dea17d25b516f5fc75ad784db566a85a35b7d2b4a7073db45230f3fc9e76db", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MENLSNPDENDDHQSPRSIDQNDQSAVETPVYSTMSIDSFVYPRTCSETTSGFSDQIDETNSFCSEASPCNWPVLTESKSSKCLSGLEMQSNECLVVQEISEPELETMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLETEKRALWKREMNCLLSVCDYIVEFIPRCQNLSNGATVEVMESRPRADIYINLPALRKLDSMLMEALDSFQNTEFWYAEEGSLSMKSARSSTGSFRKVIVQRKEEKWWLPVPLVPSEGLSDKARKQLKNKRESTNQIHKAAMAINSSILSEMEIPDSYMTTLPKCGKSSVGDSIYRYMSGSGRFFPEQLLDCLNISSEHEAVQLADRVEASMYTWRRKSCLSNSKNSWNMVKDLMSTTERTDKNYVMAERAETLLFCLKQRYPELSQTSLDICKIQYNKDVGKAVLESYSRVLEGLAFNIVAWIDDVLYVDKTMRGSE", "sequence_length": 473, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b1dea17d25b516f5fc75ad784db566a85a35b7d2b4a7073db45230f3fc9e76db", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4IJ27.json", "taxon_id": "3702", "uniprot_accession": "A4IJ27", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-2-1-20-58-1310.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.1310", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-2-1-20-58-1310.yaml" } ], "pfam_ids": [ "PF03759" ], "protein_name": "Rop 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"2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/secondary-cell-wall-go0009531.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009531", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/secondary-cell-wall-go0009531.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/prone-domain-ipr005512.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005512", "section": 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"NOT_ASSESSED", "record_id": "PROSITE:PS51334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/prone.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-1-1-20-58-2010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.2010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-1-1-20-58-2010.yaml" } ], "pfam_ids": [ "PF03759" ], "protein_name": "Rop guanine nucleotide exchange factor 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESSSNSDQNEGTPTSSVSSPYRRTYSDISGLSHRFDVQSFYNRPSNTNAVVLSGHEEDVSEDAEEPKDDVVNDVHGDGDEEDSDIDSAEDAELEMMRERFAKLLLGEDMSGSGKGVCTAVTVSNSITNLYATVFGQSLRLQPLSTEKKDLWKREMNCFMSICDYIVEVIPRSLGTNVEITETKLRSDILMSLPALRKLDNMLMEILDSFTENEFWYVERGSSSMNSGGGGRDSGTFRKVVVQRKDEKWWLPVPCVPAEGLSEEERKHLRHKRDCASQIHKAALAINDSTLNDMDIPDSYLTTLPKSGKASVGDVIYKQLCTAEKFYPDQLLDILKITSEHEALELADKVEASLVTWRRKTGGLTHSKSSWDMMKDISGDADRGNDKNHILAARARSLLFCLKQRYPELSQTSLDICKIQFNRDVGKAVLESYSRVLEGLAYNVVSWIDDVLYVDRTVRNRDD", "sequence_length": 463, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "468cee3006690cdbbf874bfc5e79e735199d0861f78827c048b8f3f12a2cafbd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0WNP7.json", "taxon_id": "3702", "uniprot_accession": "Q0WNP7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-1-1-20-58-2010.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-2-1-20-58-1310.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.1310", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-2-1-20-58-1310.yaml" } ], "pfam_ids": [ "PF03759" ], "protein_name": "Rop guanine nucleotide exchange factor 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFDGRNSGHSSFSSRGDGMHTPEHELAGHAAPSTRRGKQNRRSDMEVMKERFAKLLLGEDMSGGGTGETSALALSNAITKLADSMFGEQMKLQPMYPETKENWRKEMGWLLSVIDHIVQFVPSRQMGKNGQFTEIMVTKQRDDLLTNIPALRKLDSVLLETLDNFKDQKDFWYVPRDMEDADHNGDWRRDENWWLPVVKVPTDGLSEESRRWLQNQKDSVAQVLKAATAINAHVLSEMHVPENYIDSLPKNGKTSLGDFLYKSITEESFDPDYFVSFLDLSTEHKVLDLKNRIEASMVIWKRKMCQKEKDGKSQWGSTVSLEKRELFEVRAETILVMLKQQFPGIPQSSLEVSKIKNNKDVGQAILESYSRVLESLASKIMSRIEDVLEADRLVQRQLMGEAETRSESEAESEYEETEKVVAAETPNSRKLSDFIGWRLSSDTKKHSSMSDIEFFHKVEQEKEKPMMKSPRALPKKFSYLAKLENMRSPSDRH", "sequence_length": 493, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aaeb5d84092e40eff44be4a93f56c6d04bfc9908336b3c60c774918a55e1664a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1KS66.json", "taxon_id": "3702", "uniprot_accession": "Q1KS66", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/prone-domain-ipr005512.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/prone-domain-ipr005512.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/prone-pf03759.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03759", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/prone-pf03759.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/prone.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/prone.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-1-1-20-58-2010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.2010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-1-1-20-58-2010.yaml" } ], "pfam_ids": [ "PF03759" ], "protein_name": "Rop guanine nucleotide exchange factor 14", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMLMRRRLACCSREREISIDFDEHEQDKMITYYGLETCIINNQSYEEESGTSRGDGCLTDSLDDDAFSSCSSSKDASSSFSSKWLPMKNDEHSCDGLNLSGRSQHFDAKEKKKQGYGSSQHFDAKEKPGYVYCHLDVEAMKEKFSKLLLGEDVTGGCKGVQVALALSNAVTHLATSIFGELWKLEPLCEEKKQKWRREMDWLLSPTNYMIELVPSKQNDANGRSLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVNTEFWYSEIGSRAEGKNKSTSESKRWWLPSPQVPKPGLSNSGRKKLLDKGKVVYQVFKATKAINENILLEMPVPIVIKEAIPKSGKNSLGDELYKMLAVESATVDEIFISLNLGTEHAALETVNKLESAMFAWKERITEQGSNGKSPVRASWSFAKDPLSEIGRNESLLNRAEALRTQIKSKHPNLPHSFLDATKIQYDKDIGHAVLEAYSRTLANLAFRILSRMGEILKEDSLSNPNSPAPPSCFPSSRDPYRTPERPLLSSRVRHSLTDDMNKADGTETGLDFLFADAKASNSVNTTPSRSSRLWCLSKVPSDTSP", "sequence_length": 576, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f71d17bfc97933158f49ccdbdb492ce87d516e54d0cc5023017027122de5e76d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q56WM6.json", "taxon_id": "3702", "uniprot_accession": "Q56WM6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/prone-domain-ipr005512.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/prone-domain-ipr005512.yaml" }, { "cited_uniprot_accession": "", "commit": 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"cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-1-1-20-58-2010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.2010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-1-1-20-58-2010.yaml" } ], "pfam_ids": [ "PF03759" ], "protein_name": "Rop guanine nucleotide exchange factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSLSSEEDDEVSSERCGSYSPSADISESESSSSFSCHRFDGEGASSSIPSSPRVVAGRGFYFPAPVMLPVIGGKDVVWDDKQPDNDLSEIEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRELEWLLCVSDSIVELIPSIQQFPGGGTYEIMETRPRSDLYANLPALKKLDAMLIDMLDAFSDTEFWYTDRGIVLGDCDKDSYNSPASVRQEDKWWLPCPKVPPNGLSEEARKKLQQCRDFANQILKAALAINSGVLAEMEIPDPYLETLPKSGKECLGEIIYQYLTANKFSPECLLDCLDLSSEHQTLEIANRIEAAVHVWRQKNGRRHKKQAKLKLSSWGGKVKGLVNDNERNDFLVQRAETLLQSLRIRFPGLPQTTLDMNKIQYNKDVGQSILESYSRVMESMAFNITARIDDVLYVDDAMRRSISVTESLSLFSINGLNPQKAFSVQSSPHGSPFATPALSVASRSPRRAPPLYSVKRNGTREKGIVGETEKAWSYAGNLSSRRVTGVTPERD", "sequence_length": 548, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cc250c3e8cc9f780321c22bd8a810315c1ce685bc1505de0e84d067b2bac8e21", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q93ZY2.json", "taxon_id": "3702", "uniprot_accession": "Q93ZY2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/prone-pf03759.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/prone.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/prone.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-1-1-20-58-2010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.2010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-1-1-20-58-2010.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-2-1-20-58-1310.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.1310", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-2-1-20-58-1310.yaml" } ], "pfam_ids": [ "PF03759" ], "protein_name": "Rop guanine nucleotide exchange factor 12", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVRASEQEQETYRSRLFNFKWRNNDNNSATRHNKSLSVETGLDEAATGSHDAEPLTIIHPSQGPPLSRSAADEAVLAALAASQARERQLLADMEQMKERFSKLLLGEDNSGGGKGVSSALALSNAITNLAASVFGEQRRLEPMPAERRARWRKEIDWLLSVTDYVVEFAPSQQKNKDGTNMEIMTTRQRTDLHMNIPALKKLDAMLIDCLENFKDQSEFSYISKDSPDLDGKRNDEKWWIPTVKVPPDGLSEASRRFLQYQKDCVNQVLKAAMAINAQVLFEMEIPESYIDSLPKNGRASLGDQMYKNITVDFFDPDQFLSSMDMSSEHKIVDLKNRIEASIIIWKRKMVYKDNKSSAPWASGVSLEKREVFEERAETILLILKQRYPGISQSSLDISKIQFNEDVGQAVLESYSRILESLAYTVLSRIDDVLEADRAGNKRNTPLEAEEETLVGSMTLSDFMGWDFDQAANAELESKKDLPDDPLIKEKLSVVTTKKTSYLETLGGVKSPTARH", "sequence_length": 515, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9a87bf6eaa84e6abae7da9f0a83fa237c21990ef9f6554a34347eca85f46bd1f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CA89.json", "taxon_id": "3702", "uniprot_accession": "Q9CA89", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-2-1-20-58-1310.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.1310", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-2-1-20-58-1310.yaml" } ], "pfam_ids": [ "PF03759" ], "protein_name": "Rho guanine nucleotide exchange factor 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVAALERGLSASKSFNFKRMFDSSSTKQQQSQTIVVENGDSHIVESNTPESQNSDSFVESPVESSLPMISPLTRPGKRSERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTLDNFRGHNEFWYVSRDSEEGQQARNDRTNDKWWLPPVKVPPGGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSITEEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTKDTKSSWGSAVSLEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVMSRIEDVLYTDTLALKQTLLAEETSDGGRTTETDSESAGSSNSGEEAEKHDPHSKTLLDFMGWNDNSSKGGDKPTKSPNLTPKKLSYLEKLENLNGFRSPKDRH", "sequence_length": 523, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "74bb9ef0c187fc579a7aa4e03e117d234de638619af38c908b3623b8e930bb7f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LV40.json", "taxon_id": "3702", "uniprot_accession": "Q9LV40", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/prone-domain-ipr005512.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/prone-domain-ipr005512.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/prone-pf03759.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03759", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/prone-pf03759.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/prone.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/prone.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-1-1-20-58-2010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.2010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-1-1-20-58-2010.yaml" } ], "pfam_ids": [ "PF03759" ], "protein_name": "Rop guanine nucleotide exchange factor 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDGSSENLPEVEEKGRESSCCSSETTRQEEEEQSPSCTEDFTASPVSSRWSVKNIDGEKKKIRSDSRVSEVEMMKERFSKLLLGEDMSGSGNGVCTALAISNAITNLCATLFGQLWRLEPLPTEKKEMWRREMEWLLCVSDHIVEMTPTWQTFPDGTKLEIMTCRPRSDLYVNLPALRKLDNMLLEILDSFEETEFWYVDQGIMAHESAADGSSSFRKSFQRQEDKWWLPVPRVSPGGLQENSRKQLQHKRDCTNQILKAAMAINSITLADMEIPESYLESLPRKGRSCLGDLIYRYISSDQFSPECLLDCLDLSSEHQAIEIANRVESSIYLWHKRTNSKPATNTKTSWEMVKELMVDADKLELMADRAESLLLSLKQRFPGLPQTALDMSKIQYNKDIGKSILESYSRVLESLAFNIVARIDDLLFVDDLTRHSSDQIPTTLGNNGNDAPKSIAVPVSNYTTPSYSPSKQELRSSITVPPSPSRFKIPHSSSVKRVLTAYVTKNEPRLKNLPLERSSRSSSSERLSLEKCMKESLNVSNLDPGI", "sequence_length": 546, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cd6eaf3f146b3449fcc42aafb5411fef9c4eb611ecbf760d0f6d6a39861b0cc2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LZN0.json", "taxon_id": "3702", "uniprot_accession": "Q9LZN0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/prone-domain-ipr005512.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/prone-domain-ipr005512.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/prone-pf03759.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03759", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/prone-pf03759.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/prone.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/prone.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-1-1-20-58-2010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.2010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-1-1-20-58-2010.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-2-1-20-58-1310.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.1310", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-2-1-20-58-1310.yaml" } ], "pfam_ids": [ "PF03759" ], "protein_name": "Rop guanine nucleotide exchange factor 11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVKAMEQEQETYKSRLFHFKNMNENSASRHVKSWSSDCAMRMDGSDNLDDDDNDMMMFRSQPGKCGSVDRPSLPIGGVTPNRNDKLPRVSSSDSMEALIILQAAMEQMKEKFSKLLLGEDMSGGGKGVSSALALSNAITNLAASAFGEQRRLEPMAVDRKTRWRREIGWLISVADYIVEFAPTQQTNKDGTSMEVMSTRQRTDLLCNIPALKKLDAMLLDCLDKFKDQDEFYYVKKDSPDSCETRNDEKWWLPAVKVPPNGLSEISRRFLQSQKECVNQVLKAAMAINAQVLSEMEIPESYLESLPKNGRASLGDVIYRMITVEMFDADQFLIEMDLSSEHKILDLKNRIEASIVIWKRKMVQKDTKSPWGSTVSIEKREQFEERAETILLLLKQGFPGISQSSLDISKIQFNRDVGLAILESYSRVLESLAHTVMSRIEDVLYADQLTQEPTNNAPSKNRYSLKENEKLREERLSFTEDMASGTLSDVMQWGNKNNEMKKESFFGDREKPLLSKVTGIMTNNKKSSYLDNLGAMRSPTARYS", "sequence_length": 543, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f902df438f780398496f59a0f261ca223d827ba97a2c9bbb2f65ec9dc75cb075", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M811.json", "taxon_id": "3702", "uniprot_accession": "Q9M811", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-2-1-20-58-1310.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.1310", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/prone-domain-subdomain-2-1-20-58-1310.yaml" } ], "pfam_ids": [ "PF03759" ], "protein_name": "Rop guanine nucleotide exchange factor 9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVPSLERGISITSSFNLDRMFDSSPGKEQQQPHLAETTMPESQTQDSLGGSPVETSRPMTSRLISRRQDKQQSETEMMKDRFTKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMAPDRRARWKKEIDWLLSVTDHIVEFVPSQQISKEGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTLDNFRGHNEFWYVSRDSEEGKQARNERTKDKWWLPPVKVPPNGLSESARRMLHFQKDSVSQVQKAAMAINAQVLSEMAIPDSYIESLPKNGRVSLGDSLYKSITEEWFDPEQFLSTLDLSTEHKVLDVKNRIEASIVIWKRKLHLKDNKSSWGSAVSLEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQYNKDVGHAVLESYSRILESLGYTEMSRIDDVLYADSLARKQCTGEETSDGGKIATETDSASAGSSNYSGEEIEKLESQNSSKTTLLDFIGWSDNSSKGQSEKPPKSPRMTPKKLSYLEKLENLNGFRSPKDRH", "sequence_length": 517, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "85baa686a0febbc214f76674b3cad32713a667542bebb3a70cadbf9302ad18aa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SVQ3.json", "taxon_id": "3702", "uniprot_accession": "Q9SVQ3", "uniprot_release": "2026_03" } ], "pfam_id": "PF03759", "short_name": "PRONE", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF03761", "short_name": "DUF316", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF03771", "short_name": "SPDY", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/arsp-1-pf03773.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03773", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/arsp-1-pf03773.yaml" } ], "pfam_ids": [ "PF03773" ], "protein_name": "Putative permease Rv2963", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSTKVEDRVTAAVLGAIGHALALTASMTWEILWALILGFALSAVVQAVVRRSTIVTLLGDDRPRTLVIATGLGAASSSCSYAAVALARSLFRKGANFTAAMAFEIGSTNLVVELGIILALLMGWQFTAAEFVGGPIMILVLAVLFRLFVGARLIDAAREQAERGLAGSMEGHAAMDMSIKREGSFWRRLLSPPGFTSIAHVFVMEWLAILRDLILGLLIAGAIAAWVPESFWQSFFLANHPAWSAVWGPIIGPIVAIVSFVCSIGNVPLAAVLWNGGISFGGVIAFIFADLLILPILNIYRKYYGARMMLVLLGTFYASMVVAGYLIELLFGTTNLIPSQRSATVMTAEISWNYTTWLNVIFLVIAAALVVRFITSGGLPMLRMMGGSPDAPHDHHDRHDDHLGH", "sequence_length": 406, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f970b3af136ec0263426e97b091b34f65ba57a905f483f13d3004783eb7236ac", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/I6YET7.json", "taxon_id": "83332", "uniprot_accession": "I6YET7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/arsp-1-pf03773.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03773", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/arsp-1-pf03773.yaml" } ], "pfam_ids": [ "PF03773" ], "protein_name": "UPF0718 protein YraQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWEPYYGKAFTAAETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLRTLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPATLVFMGFVLGWGFAAIRLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEAQGGFFSRWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGAVDNSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAVSGVIVGGLALLF", "sequence_length": 346, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9787bc1ac6265dd25f3387e637d70871821da6b6683da2131632f3fb2fe6fd9e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P45468.json", "taxon_id": "83333", "uniprot_accession": "P45468", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus mutans serotype c (strain ATCC 700610 / UA159)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/arsp-1-pf03773.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03773", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/arsp-1-pf03773.yaml" } ], "pfam_ids": [ "PF03773" ], "protein_name": "Putative two-component membrane permease complex subunit SMU_747c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIFNHLPSSVLQCLAIFLSIIIEALPFILLGAILSGFIEVYLTPDIVQKYLPKNKIGRILFGTFVGFIFPSCECGIVPIVNRFLEKKVPSYTAIPFLATAPIINPIVLFATFSAFGNSWRFVFLRLFGAIIVAISLGILLGFIVDEHIIKESAKPCHFHDYSHKKAYQKIFYALAHAVDELFDTGRYLIFGSFVAASMQIYVPTRILTSIGHNPLTAILIMMLLAFILSLCSEADAFIGTSLLATFGVAPVVAFLLIGPMVDIKNLMMMKNAFKTKFILQFVGTSSLIIIIYCLIVGVMQ", "sequence_length": 301, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3983649114c5d540f1201cf3f1aa347fd50b47d17f205f5cf212bc4b2482edfd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8DUY3.json", "taxon_id": "210007", "uniprot_accession": "Q8DUY3", "uniprot_release": "2026_03" } ], "pfam_id": "PF03773", "short_name": "ArsP_1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chpa-c-pf03777.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03777", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chpa-c-pf03777.yaml" } ], "pfam_ids": [ "PF03777" ], "protein_name": "Chaplin-H", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKKVVAAAAATGGLVLAGAGMAVADSGAQGAAVHSPGVLSGNVVQVPVHVPVNVCGNTISVIGLLNPAFGNVCINK", "sequence_length": 77, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "844a4a08e2e20569e2495aa679b4d2154ea12561ed2256a484caf37d9cf6f04e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9AD92.json", "taxon_id": "100226", "uniprot_accession": "Q9AD92", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chpa-c-pf03777.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03777", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chpa-c-pf03777.yaml" } ], "pfam_ids": [ "PF03777" ], "protein_name": "Chaplin-C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRQATRKGLMTMAAATGVIAAAGGAAHADSGAHGTSSGSPGVLSGNTVQAPVHVPVNVCGNTVDVVGVLNPAMGNACANQGGGASGGHGGHGGHGGYGDSGGEGGSHGGSHAGGHATDSPGVGSGNHVEVPIDVPVNVCGNSIDVVGALNPTTGNDCGNGGGGDHSTPPGDHETPPGEPHNPGNPGNPDTPDKPSGPDDETPGDSTDGNRPGAQTVDQPRGDAALAETGSDLPLGLALPVGAGALLAGTVLYRKARASV", "sequence_length": 259, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d4a4cd4ab12535022ce860fef59116182e6540a6a35a1199c0a9b03be127b8bb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9AD93.json", "taxon_id": "100226", "uniprot_accession": "Q9AD93", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chpa-c-pf03777.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03777", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chpa-c-pf03777.yaml" } ], "pfam_ids": [ "PF03777" ], "protein_name": "Chaplin-F", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYNPKEHFSMSRIAKGLALTSVAAAAVAGTAGVAAADSGAQAAAAHSPGVLSGNVVQVPVHIPVNVCGNTIDVIGLLNPAFGNECEND", "sequence_length": 88, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e602eda175f4b0e0aff9e106d311af18c2bd8f2d6696d974f383edd99036b784", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9KYG7.json", "taxon_id": "100226", "uniprot_accession": "Q9KYG7", "uniprot_release": "2026_03" } ], "pfam_id": "PF03777", "short_name": "ChpA-C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF03778", "short_name": "DUF321", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain MW2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/asp23-pf03780.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03780", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/asp23-pf03780.yaml" } ], "pfam_ids": [ "PF03780" ], "protein_name": "Alkaline shock protein 23", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVDNNKAKQAYDNQTGVNEKEREERQKQQEQNQEPQFKNKLTFSDEVVEKIAGIAAREVKGILDMKGGLTDTFTNAFSSGNNVTQGVSVEVGEKQAAVDLKVILEYGESAPKIFRKVTELVKEQVKYITGLDVVEVNMQVDDVMTQKEWKQKHEKNNENNNQERQGLQ", "sequence_length": 169, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9aaa85128c09e760b794df1a27108d95a0b381d85eb998a70839466e6edc07d9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A0P7.json", "taxon_id": "196620", "uniprot_accession": "P0A0P7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain N315)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/asp23-pf03780.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03780", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/asp23-pf03780.yaml" } ], "pfam_ids": [ "PF03780" ], "protein_name": "Alkaline shock protein 23", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVDNNKAKQAYDNQTGVNEKEREERQKQQEQNQEPQFKNKLTFSDEVVEKIAGIAAREVKGILDMKGGLTDTFTNAFSSGNNVTQGVSVEVGEKQAAVDLKVILEYGESAPKIFRKVTELVKEQVKYITGLDVVEVNMQVDDVMTQKEWKQKHEKNNENNNQERQGLQ", "sequence_length": 169, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9aaa85128c09e760b794df1a27108d95a0b381d85eb998a70839466e6edc07d9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P99157.json", "taxon_id": "158879", "uniprot_accession": "P99157", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain bovine RF122 / ET3-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/asp23-pf03780.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03780", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/asp23-pf03780.yaml" } ], "pfam_ids": [ "PF03780" ], "protein_name": "Alkaline shock protein 23", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVDNNKAKQAYDNQTGVNEKEREERQKQQEQNQEPQFKNKLTFSDEVVEKIAGIAAREVKGILDMKGGLTDTFTNAFSSGNNVTQGVSVEVGEKQAAVDLKVILEYGESAPKIFRKVTELVKEQVKYITGLDVVEVNMQVDDVMTQKEWKQKHEKNNENNNQERQGLQ", "sequence_length": 169, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9aaa85128c09e760b794df1a27108d95a0b381d85eb998a70839466e6edc07d9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2YYG3.json", "taxon_id": "273036", "uniprot_accession": "Q2YYG3", "uniprot_release": "2026_03" } ], "pfam_id": "PF03780", "short_name": "Asp23", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 11, "discovery_scanned": true, "example_count": 11, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)", "origins": [ { "cited_uniprot_accession": "A0R5N0", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/ergothioneine-biosynthesis-i.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY-7255", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/ergothioneine-biosynthesis-i.yaml" } ], "pfam_ids": [ "PF03781", "PF12867" ], "protein_name": "Hercynine oxygenase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIARETLADELALARERTLRLVEFDDAELHRQYNPLMSPLVWDLAHIGQQEELWLLRDGNPDRPGMLAPEVDRLYDAFEHSRASRVNLPLLPPSDARAYCATVRAKALDTLDTLPEDDPGFRFALVISHENQHDETMLQALNLREGPPLLDTGIPLPAGRPGVAGTSVLVPGGPFVLGVDALTEPHSLDNERPAHVVDIPSFRIGRVPVTNAEWREFIDDGGYDQPRWWSPRGWAHRQEAGLVAPQFWNPDGTRTRFGHIEEIPGDEPVQHVTFFEAEAYAAWAGARLPTEIEWEKACAWDPVAGARRRFPWGSAQPSAALANLGGDARRPAPVGAYPAGASAYGAEQMLGDVWEWTSSPLRPWPGFTPMIYERYSTPFFEGTTSGDYRVLRGGSWAVAPGILRPSFRNWDHPIRRQIFSGVRLAWDV", "sequence_length": 428, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "27fd9fdbab594e89917029c3523a4d3bd601eeaf475c895c65009f3d210301a2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0R5N0.json", "taxon_id": "246196", "uniprot_accession": "A0R5N0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium thermoresistibile (strain ATCC 19527 / DSM 44167 / CIP 105390 / JCM 6362 / NCTC 10409 / 316)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dinb-2-pf12867.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dinb-2-pf12867.yaml" } ], "pfam_ids": [ "PF03781", "PF12867" ], "protein_name": "Hercynine oxygenase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGVAVPHRAELARQLIDARNRTLRLVDFDDAELRRQYDPLMSPLVWDLAHIGQQEELWLLRGGDPRRPGLLEPAVEQLYDAFVHPRASRVHLPLLSPAQARRFCATVRSAVLDALDRLPEDADTFAFGMVVSHEHQHDETMLQALNLRSGEPLLGSGTALPPGRPGVAGTSVLVPGGPFVLGVDLADEPYALDNERPAHVVDVPAFRIGRVPVTNAEWRAFIDDGGYRQRRWWSDAGWAYRCEAGLTAPQFWNPDGTRTRFGHVEDIPPDEPVQHVTYFEAEAYAAWAGARLPTEIEWEKACAWDPATGRRRRYPWGDAAPTAALANLGGDALRPAPVGAYPAGASACGAEQMLGDVWEWTSSPLRPWPGFTPMIYQRYSQPFFEGAGSGDYRVLRGGSWAVAADILRPSFRNWDHPIRRQIFAGVRLAWDVDRQTARPGPVGGC", "sequence_length": 446, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "34348012aae2c90ef4edea4c9677457d3b1f4c7c16937aa4c76d39adfaa2b257", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G7CFI3.json", "taxon_id": "1078020", "uniprot_accession": "G7CFI3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/formylglycine-generating-oxidase-activity-go0120147.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0120147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/formylglycine-generating-oxidase-activity-go0120147.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/sulfatase-modifying-factor-enzyme-like-domain-ipr005532.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005532", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sulfatase-modifying-factor-enzyme-like-domain-ipr005532.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/sulfatase-modifying-factor-enzyme-superfamily-ipr042095.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR042095", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/sulfatase-modifying-factor-enzyme-superfamily-ipr042095.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/paralog-of-fge-formylglycine-generating-enzyme-3-90-1580-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.90.1580.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/paralog-of-fge-formylglycine-generating-enzyme-3-90-1580-10.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O34722", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03781" ], "protein_name": "Uncharacterized protein YfmG", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "12e33b5b01bd028a6c1380162758a58310628900f4d54d2a07a9b639470c8dbd", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTLLMQDHKSIYNKDIEILIEVEELITSVPENKKNDFKSLIDNRIMTLLNKIQHPVAAENVFGMCIAYPNTYIRYRLIDFVEKWVPYFSAVETIINLTQDPDDLVSFKAMDVCANHKIEESVAYLSSIIDDVRESISYPKKPVGLGAQKVLSTLLDIFGVEKHEELVMLKNYFDQNGILPNNFDFEEKIPQSLIEEFEKTEEDGMILIPGGFFEFGLNENEIPDKTFNWKDAVPRQKVWLPPFFIDKYPVTNKDYDIFTEFIEENGHIFCHPNEPQNKQHRRNTYWDDRYLDNHPVTGIDFYDAFAYARYKGKELPTEFQWEKAARGEKGNVWPWGDKFDPAKVQYAGSLYNEPITSLKSWRENLLKAHADKELNHLTSDIFEQNGESPYGVCGMIGGTWEWTRSELKTKRAFHPIFENVPFNSVNSFAVLKGGSFFSHPGLMFPSFRAKDIPFCRHNEMGIRCVKNIPVYKIRESINGPITNKAIY", "sequence_length": 487, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "12e33b5b01bd028a6c1380162758a58310628900f4d54d2a07a9b639470c8dbd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34722.json", "taxon_id": "224308", "uniprot_accession": "O34722", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dinb-2-pf12867.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dinb-2-pf12867.yaml" } ], "pfam_ids": [ "PF03781", "PF10017", "PF12867" ], "protein_name": "Ergothioneine biosynthesis protein A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSPLPCPSKKVEIVDIHRNDVEFSLVNEIRKGLNPPEGTPRSLPTMLLYDAQGLKLFEEITYVDEYYLTNAEIEVLQNHSKKIVERVPENAQLLELGSGNLRKIKILLQEFERTGKHVDYYALDLSLSELQRTFVEVSSDEYSHVDLHGLHGTYDDALAWLSNPQNLQRPTVVMSMGSSIGNFSREGAAEFLAQFARLLKPSDLMIIGLDACTDPDKVYKAYNDSKGITQRFYENGLLHANAVLGYEAFQLSEWEVVTDYDVAGGRHRAFYSPKQNVTIDGVLLQKGEKLVFEEATKYSPQQREQLWRDANLVLCEELGISSEEYHIHLLSPPTLSLPSQPSEYAANPVPSFKEFQSLWTAWDTVTKAMVPREELLAKPIKLRNALIFYFGHIPTFTDIHLTRALGGSPTEPRNYRQIFERGIDPDVDNPEHCHSHSEIPDEWPPLAEILDYQDRVRSRVDSVLQRDDITQNRCLGEALWIGFEHEAMHLETFLYMLLQSDKTLPPPLADRPDFEKLFHQARANAKPNEWFAIPEQTLSIGFDDTDEQSLPDVSFGWDNEKPQRTITVRAFEAQAHAITNGEYAKYLQATRQRRRPESWVLTHSDENYPISKGVTLESSQATKDFMDNFAVRTVFGPVPLEFAQDWPVMASYDELALYAEWVGCRLPTYEEVKSIYNYSAQLKETRQHEPSDHESNGVKGINRDMVTNGHSKVHQDKPRTPERQPIQPPSQSTMPVFVDLHGCNVGFKHWHPTPVIQNGDRLAGHGELGGVWEWTSTPLTPHDGFKAMDIYPGYTADFFDGKHNIVLGGSWATHPRIAGRTTFVNWYQHNYPYTWAGARLVRSQ", "sequence_length": 844, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a17b0a1068915873ade5a67c3c3cf8077512e0c6468f15e0edd02443dfbefb28", 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true, "sequence": "MPSAESMTPSSALGQLKATGQHVLSKLQQQTSNADIIDIRRVAVEINLKTEITSMFRPKDGPRQLPTLLLYNERGLQLFERITYLEEYYLTNDEIKILTKHATEMASFIPSGAMIIELGSGNLRKVNLLLEALDNAGKAIDYYALDLSREELERTLAQVPSYKHVKCHGLLGTYDDGRDWLKAPENINKQKCILHLGSSIGNFNRSDAATFLKGFTDVLGPNDKMLIGVDACNDPARVYHAYNDKVGITHEFILNGLRNANEIIGETAFIEGDWRVIGEYVYDEEGGRHQAFYAPTRDTMVMGELIRSHDRIQIEQSLKYSKEESERLWSTAGLEQVSEWTYGNEYGLHLLAKSRMSFSLIPSVYARSALPTLDDWEALWATWDVVTRQMLPQEELLEKPIKLRNACIFYLGHIPTFLDIQLTKTTKQAPSEPAHFCKIFERGIDPDVDNPELCHAHSEIPDEWPPVEEILTYQETVRSRLRGLYAHGIANIPRNVGRAIWVGFEHELMHIETLLYMMLQSDKTLIPTHIPRPDFDKLARKAESERVPNQWFKIPAQEITIGLDDPEDGSDINKHYGWDNEKPPRRVQVAAFQAQGRPITNEEYAQYLLEKNIDKLPASWARLDNENISNGTTNSVSGHHSNRTSKQQLPSSFLEKTAVRTVYGLVPLKHALDWPVFASYDELAGCAAYMGGRIPTFEETRSIYAYADALKKKKEAERQLGRTVPAVNAHLTNNGVEITPPSSPSSETPAESSSPSDSNTTLITTEDLFSDLDGANVGFHNWHPMPITSKGNTLVGQGELGGVWEWTSSVLRKWEGFEPMELYPGYTADFFDEKHNIVLGGSWATHPRIAGRKSFVNWYQRNYPYAWVGARVVRDL", "sequence_length": 876, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "37da40672f467a94d9739cc4f3652f9ddf780d89ff047f8d79c3384f7a1b76fc", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q7RX33.json", "taxon_id": "367110", "uniprot_accession": "Q7RX33", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/sulfatase-modifying-factor-enzyme-like-domain-ipr005532.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005532", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sulfatase-modifying-factor-enzyme-like-domain-ipr005532.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/sulfatase-modifying-factor-enzyme-superfamily-ipr042095.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR042095", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/sulfatase-modifying-factor-enzyme-superfamily-ipr042095.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/paralog-of-fge-formylglycine-generating-enzyme-3-90-1580-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.90.1580.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/paralog-of-fge-formylglycine-generating-enzyme-3-90-1580-10.yaml" } ], "pfam_ids": [ "PF03781" ], "protein_name": "Inactive C-alpha-formylglycine-generating enzyme 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSEFWFPSMGSLLPPVLLLWLLSCPRLQLGHAQDPAMVHLPGGRFLMGTDAPDGRDGEGPAREVTVKPFAIDIFPVTNKDFREFVREKKYQTEAEAFGWSFVFEDFVSPELRKQENLMPAVHWWQPVPKAFWRQPAGPGSGIREKLELPVVHVSWNDAGAYCAWRGRRLPTEEEWEFAARGGLKGQVYPWGNRFQPNRTNLWQGKFPKGDKAEDGFHGLSPVNAFPPQNNYGLYDLMGNVWEWTASTYQPAGQDMRVLRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCASSAGRPKEDL", "sequence_length": 308, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "35ab02dbc1c0419688e3c7eb16162cebd3751e6c0577ada3c422f96a1f18f3e1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BPG6.json", "taxon_id": "10090", "uniprot_accession": "Q8BPG6", 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"data/traits/sequence/domain/pfam/fge-sulfatase-pf03781.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03781", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fge-sulfatase-pf03781.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/sulfatase-modifying-factor-enzyme-superfamily-ipr042095.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR042095", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/sulfatase-modifying-factor-enzyme-superfamily-ipr042095.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/paralog-of-fge-formylglycine-generating-enzyme-3-90-1580-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.90.1580.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/paralog-of-fge-formylglycine-generating-enzyme-3-90-1580-10.yaml" } ], "pfam_ids": [ "PF03781" ], "protein_name": "Inactive C-alpha-formylglycine-generating enzyme 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARHGLPLLPLLSLLVGAWLKLGNGQATSMVQLQGGRFLMGTNSPDSRDGDGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTEAEMFGWSFVFEDFVSDELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAEDGFHGVSPVNAFPAQNNYGLYDLLGNVWEWTASPYQAAEQDMRVLRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAADAGRPPGEL", "sequence_length": 301, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c946da9b86fbd44e62f4724f0979acfe48a941f74bd61e66c79a545ba851eed", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NBJ7.json", "taxon_id": "9606", "uniprot_accession": "Q8NBJ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/cupric-ion-binding-go1903135.yaml", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sulfatase-modifying-factor-enzyme-like-domain-ipr005532.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fge-sulfatase-pf03781.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03781", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fge-sulfatase-pf03781.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ramps-pf03787.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03787", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ramps-pf03787.yaml" } ], "pfam_ids": [ "PF03787" ], "protein_name": "CRISPR system Cms endoribonuclease Csm3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENLTLKGKVILEGIIELETGMHIGGTKETLKIGGTDNPVIRDAFGRILIPGSSLKGKIRALLERKDGKYKEDGRGNYLPHDCGECEICKIFGPHDSKNIKEPVRVIVRDAYLQPEENKKDYDYLEIKVENTIDRLKGTTIKGGIRNMERVVAGSKFKFEVVFNIYKESDKELIKKFIEGMKLLEDDYLGGSGSRGYGKIKFRDIKLICKPKEYYEGNENSKKESDEVESLNELESELDKIWGGINFN", "sequence_length": 248, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb5059eae7278005e9a69685fdca5a9228c1ca5daf4f9b997711e0a013d618bb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q59063.json", "taxon_id": "243232", "uniprot_accession": "Q59063", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cmr1-like-c-pf21452.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21452", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cmr1-like-c-pf21452.yaml" } ], "pfam_ids": [ "PF03787", "PF21452" ], "protein_name": "CRISPR system Cmr subunit Cmr1-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"9a481aa7d8dc09afd25d6c35aab2d820aac87f75a3110c18c7ad37d1a5e0554e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P24654.json", "taxon_id": "46015", "uniprot_accession": "P24654", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf325-pf03804.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03804", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf325-pf03804.yaml" } ], "pfam_ids": [ "PF03804" ], "protein_name": "Uncharacterized 16.2 kDa protein", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/csp-pf03860.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/uncharacterized-cysteine-rich-protein-yhjq-copper-storage-protein-like-ipr005560.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005560", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/uncharacterized-cysteine-rich-protein-yhjq-copper-storage-protein-like-ipr005560.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-1270-360-1-20-1270-360.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1270.360", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-1270-360-1-20-1270-360.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O07571", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03860" ], "protein_name": "Uncharacterized cysteine-rich protein YhjQ", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "bfce264eeb00fcf07a5586b11ef3d7ce35dbd47b323cd2456b349eb97ec7bea7", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEQYSEACIEACIDCMKACNHCFTKCLEESVQHHLSGCIRLDRECADICALAVKAMQTDSPFMKEICALCADICEACGTECGKHDHDHCQACAKACFTCAEQCRSMAA", "sequence_length": 108, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "bfce264eeb00fcf07a5586b11ef3d7ce35dbd47b323cd2456b349eb97ec7bea7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O07571.json", "taxon_id": "224308", "uniprot_accession": 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"unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf334-pf03904.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf334-pf03904.yaml" } ], "pfam_ids": [ "PF03904" ], "protein_name": "Uncharacterized protein C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf348-pf03990.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03990", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf348-pf03990.yaml" } ], "pfam_ids": [ "PF03990", "PF06737", "PF07501" ], "protein_name": "Resuscitation-promoting factor Rpf2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"MRGPPRGVRGADMTTSEPGGATPKPTPRPTPHPTPRPVPRPSRVAPVVAAAPSSDPHRFGRVDPDGTVWLITGSGERVIGAWQAGDTESAFAHFGRRYDDLHTEVALLERRLATGTGDARKIKSAAAALAESLPTASVLGDVDALSARLSSILEQADEAAQNERAQRDEYRAAQTARKEALAAEAEDIAANSTQWKAAGDRLREILDEWRTITGLERKADDALWKRYSAARETFNRRRGSHFAELDRSRVSARQAKEELCERAEALADSTDWGATSAAFRDLLAEWKAAGRAAKDVDDALWQRFKAAQDTFFSARNAAHAERDAEFKANAAAKEALLAEAEKIDLSDNEAARAALRVIGEKWDAIGKVPRERAAELERRLRAIEKKIREAPTGGVDPEAKARADQFRARAEQFERQAEKAEAAGRTKDAEEARASAAQWRQWAEAAAESLEKRR", "sequence_length": 454, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3b6a45655688c46056bcb7e072664ace9a563ab61a358f5fd1075edcc6c071d6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0QVX6.json", "taxon_id": "246196", "uniprot_accession": "A0QVX6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf349-pf03993.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03993", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf349-pf03993.yaml" } ], "pfam_ids": [ "PF03993" ], "protein_name": "Uncharacterized protein MRA_2757", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTADEPRSDDSSGSAPQPAATPVPRPGPRPGPRPVPRPTSYPVGAHPPSDPHRFGRIDDDGTVWLVSASGERIVGSWQAGDPEAAFAHFGRRFDDLSTEIMLMDERLASGTGDARKIKAHAIALAETLPTACVLGDVDALADRLTSIRDRAEVIAAADRSRREEHRAAQTARKEALAAEAEELAANATQWKVAGDRLRAILDEWKTISGVDRKVDDALWKRYSTARDTFNRRRGSHFAELDRERSGVRQSKERLCERAEELSESTDWTATSAEFRKLLADWKAAGRASKDVDDALWRRFKAAQDSFFTARNAATAEKEAELRANADAKEALLAEAERLDTTNHEAARAALRSIAEKWDAIGKVSRERAAELERRLRAVEKKVREAGEADWSDPQARARAEQFRARAEQFEHQAEKAAAAGRTKEADEAKANAEQWRQWAEAAADALTRRP", "sequence_length": 450, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0fb51c7d2bfa65dadbf34a3eed742a6675fe433d09d7bbc3c2db2895bbd79539", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5U683.json", "taxon_id": "419947", "uniprot_accession": "A5U683", "uniprot_release": "2026_03" } ], "pfam_id": "PF03993", "short_name": "DUF349", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/protein-of-unknown-function-duf350-ipr007140.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/protein-of-unknown-function-duf350-ipr007140.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf350-pf03994.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03994", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf350-pf03994.yaml" } ], "pfam_ids": [ "PF03994" ], "protein_name": "UPF0719 inner membrane protein YjfL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHILDSLLAFSAYFFIGVAMVIIFLFIYSKITPHNEWQLIKNNNTAASLAFSGTLLGYVIPLSSAAINAVSIPDYFAWGGIALVIQLLVFAGVRLYMPALSEKIINHNTAAGMFMGTAALAGGIFNAACMTW", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f20824cabaa4a6f11ff248314d65fac582f21d19312d733c1ad92f09e7d966a9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AF80.json", "taxon_id": "83333", "uniprot_accession": "P0AF80", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf350-pf03994.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03994", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf350-pf03994.yaml" } ], "pfam_ids": [ "PF03994" ], "protein_name": "UPF0719 inner membrane protein YjfL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHILDSLLAFSAYFFIGVAMVIIFLFIYSKITPHNEWQLIKNNNTAASLAFSGTLLGYVIPLSSAAINAVSIPDYFAWGGIALVIQLLVFAGVRLYMPALSEKIINHNTAAGMFMGTAALAGGIFNAACMTW", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f20824cabaa4a6f11ff248314d65fac582f21d19312d733c1ad92f09e7d966a9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AF81.json", "taxon_id": "83334", "uniprot_accession": "P0AF81", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/protein-of-unknown-function-duf350-ipr007140.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/protein-of-unknown-function-duf350-ipr007140.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf350-pf03994.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03994", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf350-pf03994.yaml" } ], "pfam_ids": [ "PF03994" ], "protein_name": "UPF0719 transmembrane protein YshE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDFWENELVEIAAYYSVAVLCLVLFLTVFELVTAYKNWEEIQKGNLAVAMATGGKILGIANVFQHSISQHNSLLQMIGWGVYGFVMLLISYFIFEFLTPRFKIDQEIENDNRAVGFISFVISVGLSFVVAAGI", "sequence_length": 134, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b749fb2bf1d5edeade22570140d022e86fe2e4214a35daa60e502f81c58cbd80", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P94546.json", "taxon_id": "224308", "uniprot_accession": "P94546", "uniprot_release": "2026_03" } ], "pfam_id": "PF03994", "short_name": "DUF350", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces nigrescens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/inhibitor-i36-pf03995.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03995", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/inhibitor-i36-pf03995.yaml" } ], "pfam_ids": [ "PF03995" ], "protein_name": "Metalloproteinase inhibitor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVRKRALGLAGSALTLVLGAVGFTAPAQAAPSCPAGSLCTYSGTGLSGARTVIPASDMEKAGTDGVKLPASARSFANGTHFTLRYGPARKVTCVRFPCYQYATVGKVAPGAQLRSLPSPGATVTVGQDLGD", "sequence_length": 131, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4a8c1213fc1988ee5cfd047af8d3399cf3f1a84e7ca7cf8a9f21c9e021f6dab8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P01077.json", "taxon_id": "1920", "uniprot_accession": "P01077", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyostelium discoideum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/inhibitor-i36-pf03995.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF03995", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/inhibitor-i36-pf03995.yaml" } ], "pfam_ids": [ "PF03995" ], "protein_name": "Uncharacterized gerABC family protein DDB_G0291103", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLKSIIFVLFIAFFAFSLANDDDPTCPNGFICFWVGQNYTGDQWKWTPRMNYRDLPRQYHNNVGSYVAKTNACFKNWIPYLTFECNEGDSSHSFTFGKIIDGVSHEC", "sequence_length": 108, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "575be792f1c4df1ff1dff7a64d5fc1e32e62c517c7b1c3e46dc8fceab3d84e2c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q54F49.json", "taxon_id": "44689", "uniprot_accession": "Q54F49", "uniprot_release": "2026_03" } ], "pfam_id": "PF03995", "short_name": "Inhibitor_I36", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/vhr1-pf04001.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/vhr1-pf04001.yaml" } ], "pfam_ids": [ "PF04001" ], "protein_name": "Transcription factor VHR2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIDDTENSKIHLEGSHKTGKYTGYGTTHKIRAQLNFNDEKKWKKFSSRRLELIDSFGLSQHKASEQDDNIRQIATILRSEFEYPDTFSAEFEKLVTAAVQSVRRNRKRSKKKLLDSKKKIARGKVQKIPLSPPSSSNMGSCSASNASSSDEEASVKEEPAEHALPSLNTITSQKLLPYPNGRTLPPVPTQVRSLLKKNASLLRDPSAPYAHGGDEKLQKFDIEDQPLESEQEYDFIAKSIIVEIVNNAIPLPEQIQRDKFIRPNLTKKKGCQSKVVISNNLRKLILSKIHNSRTCLEMSKDERNLDSFANLETLGKNSLMASISLVVENSFSHLPSSTKQYLTERLSSIEFLTILSQRLFMPATRQLFADLSQEKIQVRVLNLILGSLVKDYGFDASLAPINEIIYHMTLHQYPLVCSNKQSNPMRPHSTSEVLSAHSSTKDASTPGKEEPRVTRSSTSADSTIITLPSIEVPNTYDDDRLKMLSAISLQIENSTFSKPFSTISK", "sequence_length": 505, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aa162359ba58f3da3195f90414fa24ab0fa70548538ce5f9dd9ccd1c10124233", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40041.json", "taxon_id": "559292", "uniprot_accession": "P40041", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cellular-response-to-biotin-starvation-go1990383.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990383", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cellular-response-to-biotin-starvation-go1990383.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/vhr1-pf04001.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/vhr1-pf04001.yaml" } ], "pfam_ids": [ "PF04001" ], "protein_name": "Transcription factor VHR1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNGPPTFTQYRINKFSGNGATHKIRELLNFNDEKKWKQFSSRRLELIDKFQLSQYKASEQDQNIKQIATILRTEFGYPVSCSKEFEKLVTAAVQSVRRNRKRSKKRYALSIANGSGGNVNNSISSNSTSDDEISPSIYQRSNSDFLPSSNYAADFQFSNKFQPLMSHQSHNGTIFPTVGTQNDSSPSVTSTQQKYNDIVTMLVHDLVTNVVPLSEQALKDPYTGPNLSHFATSSLSQQPNITTNIPIDSTVPFFLREKLLLQIQRSRTCQDISQAAGSIDIYANLEILGEMSIRMSIAFVIERFFSNLVSSSMKYITAKTCSPENLALLSQRLFGAATRHNLSHFPAAQVQLRLLYLVIGGIVKDFGFDPTLYPLSEIIHHIVMVQYPLASSCASEPPSSSPNKRVKRSPPVVSSDVMLNNNNTLSNRATLLTTLPMKPQSANKDVNRRVIIRFNDREQAFTFHQLSNGPPTVSEVLENCKNLFNIINKNKNFGIFHNDNLLNDESLAKLFDSFSTSEIHLVIKDISTIPLQDAKIPVPITLPKMSCIGENPSMPSIPLVPQEKDDPKKSSLTAFDNILNRISKSPMNEENSNTTLNTGTSTSNTNNNDHNESVPAPYVTKNKNSFQNGNLPQPVFQPLL", "sequence_length": 640, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b422fa44afb74d22fdaf0a88c03c6e67c636732103fae6a559658575e1756900", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40522.json", "taxon_id": "559292", "uniprot_accession": "P40522", "uniprot_release": "2026_03" } ], "pfam_id": "PF04001", "short_name": "Vhr1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/radc-family-protein-nf000642.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF000642", "section": "canonical_examples", "url": 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"data/traits/sequence/conservation/interpro/uncharacterised-protein-family-upf0758-conserved-site-ipr020891.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR020891", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/uncharacterised-protein-family-upf0758-conserved-site-ipr020891.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/mov34-mpn-pad-1-family-mov34-duf2466-also-known-as-dna-repair-protein--cd08071.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd08071", "section": "canonical_examples", "url": 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"uniprot_accession": "Q47685", "uniprot_release": "2026_03" } ], "pfam_id": "PF04002", "short_name": "RadC", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf354-pf04007.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04007", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf354-pf04007.yaml" } ], "pfam_ids": [ "PF04007" ], 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"short_name": "Adenosine_kin", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf356-pf04009.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04009", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf356-pf04009.yaml" } ], "pfam_ids": [ "PF04009" ], "protein_name": "Uncharacterized protein MJ0949", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTILLIRGDSYEKLKNALADVDRHAELTIIGKPKIIVPEAADEILSHILGEVKKPCKTACLAKIAEKAPKAIDRIRKIHPPAHIVVISERYGDIYYKLLDDFPKLPVLKGYYKSKKKDKKKKK", "sequence_length": 123, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e5e89b5c5079e0353694f96a69a82341d3023080fd4945ac9078e930b509bc35", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58359.json", "taxon_id": "243232", "uniprot_accession": "Q58359", "uniprot_release": "2026_03" } ], "pfam_id": "PF04009", "short_name": "DUF356", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf357-pf04010.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/af1782-like-superfamily-ipr036809.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036809", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/af1782-like-superfamily-ipr036809.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/af1782-like-1-20-1270-90.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1270.90", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/af1782-like-1-20-1270-90.yaml" } ], "pfam_ids": [ "PF04010" ], "protein_name": "Uncharacterized protein MJ0273", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMVRNVIKEITEEKLENYFKRTEEAIKIIKKGMPPKRSLLYDVAKDFLLMIESYFEDAKAFKERGDYVTAFASLNYAYGWIDAGVRLGIFDVGDDDVRFTLAK", "sequence_length": 103, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "81d7b19251408a0bd2f687b1c4c54a856764c4a90d74a2f6c217b696d871e629", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57721.json", "taxon_id": "243232", "uniprot_accession": "Q57721", "uniprot_release": "2026_03" } ], "pfam_id": "PF04010", "short_name": "DUF357", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/trna-pseudouridine-54-n-1-methyltransferase-trmy-trna-pseudouridine-54-cd18087.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd18087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/trna-pseudouridine-54-n-1-methyltransferase-trmy-trna-pseudouridine-54-cd18087.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/methyltrn-rna-2-pf04013.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04013", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/methyltrn-rna-2-pf04013.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q59034", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04013" ], "protein_name": "tRNA (pseudouridine(54)-N(1))-methyltransferase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ce6336529d9f17f733f267a7c0a49f91fced122c308830778881d687fa52c8bd", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MREFIFKANKTITSSDINLKDLPGSCGRLDLLCRCVSDAFFLSHDIRRDVVFYAVLYGQPNPPVCIKFVGSELKKVSPDERNIAIFIKKALKKFEELDEEQRKDWNQSTPGIYVRRLGFRNLVLEKLEEGKNIYYLHMNGEDVENVDIENPVFIIGDHIGIGEEDERFLDEIKAKRISLSPLELHANHCITIIHNVLDKKRICEI", "sequence_length": 205, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ce6336529d9f17f733f267a7c0a49f91fced122c308830778881d687fa52c8bd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q59034.json", "taxon_id": "243232", "uniprot_accession": "Q59034", "uniprot_release": "2026_03" } ], "pfam_id": "PF04013", "short_name": "Methyltrn_RNA_2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf362-pf04015.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04015", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf362-pf04015.yaml" } ], "pfam_ids": [ "PF04015" ], "protein_name": "Thylakoid-associated protein sll1697", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVKSVSLLRSQSYEAGSLLASLRTLLEPLGGMGNFVKPGDRVLLKPNLLTGNRPGRECITRPEVVAAVAQLVQEAGGKPFMGDSPAFGSARGVAENNGYLPLLQALDIPIVEFRGGRYATDSDSFNHLRLSKEAMDADVVINLPKLKSHAQLTMTMGVKNLFGCVPGKMKAWWHMEAGKDANRFGEMLVETAKAIAPDLSILDGIMAHEGNGPMHGDPREVGLLAASPDVFALDFVITDILQLDPATIPTMAAQERLGLNPTAAELTFPLSHPRELVVDNWKLPEVLMPIDFGLPRVLRSTFKHFYIRFVKEPLHIYTGKA", "sequence_length": 321, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d634ad5550ad66fd9b2779747c1fb104dfd350eb6cbd6049dd1ef6f7ddcf9f54", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P73695.json", "taxon_id": "1111708", "uniprot_accession": "P73695", "uniprot_release": "2026_03" } ], "pfam_id": "PF04015", "short_name": "DUF362", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4213-ipr025251.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4213-ipr025251.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/putative-heavy-metal-chelation-domain-ipr007161.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007161", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/putative-heavy-metal-chelation-domain-ipr007161.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf364-pf04016.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04016", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf364-pf04016.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4213-pf13938.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4213-pf13938.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-40-50-11590-3-40-50-11590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.50.11590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-40-50-11590-3-40-50-11590.yaml" } ], "pfam_ids": [ "PF04016", "PF13938" ], "protein_name": "Uncharacterized protein MJ0500", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFMIIEEIKERALNLLSEKEEDFKVIDFSFALPYSYVLIESNGKKALGVAMTLLEEYRGHGNRKDLNINKNLEEFINMADSFDIVERTLGVAAINAVSQYYFNFEANGKDAAELVLNRDDIKKIAFVGNMIPVVNMLKKSEKFDIYVFERSPSLLMDGVLSDAFEYRLLPEMDAVFISGTTLLNDTLDFVLDRAKNAKLKILVGPTAQSLPELFKGFGITHIASTKIIDVDKALLYLKFASSSMLFKGASKKYTMEVE", "sequence_length": 259, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "50c270e8bebda4dd3f042c931b8a157f9789377eee436a4a62b1e32d76ec064b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57923.json", "taxon_id": "243232", "uniprot_accession": "Q57923", "uniprot_release": "2026_03" } ], "pfam_id": "PF04016", "short_name": "DUF364", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf366-pf04017.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04017", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf366-pf04017.yaml" } ], "pfam_ids": [ "PF04017" ], "protein_name": "Uncharacterized protein MJ0805", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMYSRKFQILKENIGLYHGDFMDFEVYDTEYMSIIFVKDRLDYTGKEIEPLWAFKTFDIQKDSIVVFRGRMEVTTENMKDLKDIKREKDIKTPIKSEDAINFVVEHFDVIDLKTIYLRQRLLVFIAKEVIESYNIKLKRDGDDLYFEDKKLSVCIACKGTVSAKIHLGINVKSKGAEHVKIIGLEDLGIKDIDKVMREIAINYAKEIDKIERDLRKTLPLI", "sequence_length": 221, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "30526fd1797a5427de47254a4d04b05f9926e4502690f4a098a2330e2f840fa9", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q58215.json", "taxon_id": "243232", "uniprot_accession": "Q58215", "uniprot_release": "2026_03" } ], "pfam_id": "PF04017", "short_name": "DUF366", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04018", "short_name": "VCA0040-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermofilum pendens (strain DSM 2475 / Hrk 5)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf359-pf04019.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04019", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf359-pf04019.yaml" } ], "pfam_ids": [ "PF04019" ], "protein_name": "GTP-dependent dephospho-CoA kinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSSPAARRELSYSWGYLFFDEPPLSVEKAWRLVQSSRFGKTLILVGDVVSKSFRERGLGDFFIVDGHTRRNLKVEDLPGKAEAFTCKNRPGEISRECYELLRNLLTSAIGRGKKIVVYVEGEEDLLSLVALLYCPLNDSWVIYGNFRGYLEVIPCTSFFRSVAENLLVKHFEKD", "sequence_length": 175, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c5a38c03af295b0a042aa36faa5f9a34e02984f09f77403f879660acaef6efb3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1RXQ3.json", "taxon_id": "368408", "uniprot_accession": "A1RXQ3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf359-pf04019.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04019", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf359-pf04019.yaml" } ], "pfam_ids": [ "PF04019" ], "protein_name": "GTP-dependent dephospho-CoA kinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRLPEAHRDLFKKPFGTLYTSVDELLPRLEGRAVYAVGDVVTHNLLAAGVVPDIAIIDGYTMRTPCNRSPLLRARRLTVKNPPGTITGELTDAIDEAVRGQPAVIFVDGEEDLAVIPLVLAAPDGAAVLYGQPAEGVVLRLVDTAAKQEAASMLSIFVRE", "sequence_length": 161, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e6b34c155d45a2a5de7d6f969475ddc34d2ee0ceb7b79956f6ef520e4c7bf7a5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A3CXR7.json", "taxon_id": "368407", "uniprot_accession": "A3CXR7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf359-pf04019.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04019", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf359-pf04019.yaml" } ], "pfam_ids": [ "PF04019" ], "protein_name": "GTP-dependent dephospho-CoA kinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKMFFRLTRELRDELKRPLGELVRGPIPEPYLKVRGELEKHPVVTVGDVVTENVLKIGVKPIIALYDLKTKRKEYSPEIEDTAVFLTVTNPPGTITKALLDTVRKAFGLAERGRNVHILVSGEEDLAAIPAVLYAPLGTLVLYGQPDEGVVLIKVTPECKRRCAKILASMEVVRDGD", "sequence_length": 177, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "161e2895e3f4ccb4b8daa3feb0cd598ce1db887ac405c81bb9f1aef00e4ae11d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5JIY7.json", "taxon_id": "69014", "uniprot_accession": "Q5JIY7", "uniprot_release": "2026_03" } ], "pfam_id": "PF04019", "short_name": "DUF359", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/phage-holin-4-2-pf04020.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04020", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/phage-holin-4-2-pf04020.yaml" } ], "pfam_ids": [ "PF04020" ], "protein_name": "Uncharacterized membrane protein YvlD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVKWAVSILVNALLLIVIDGYIDSIHISSIGAAIIASLILSILNVLIKPLLIIFTLPVTMVTLGLFLFVINAITLMMTASIMGDSFQIDGFGTAIWASVILSVFHLLIQKGILEPLRKK", "sequence_length": 119, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1750c9bae8d624cd096244a569c35e805d9246ac2b05a2dc548c9ea5c9143977", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34648.json", "taxon_id": "224308", "uniprot_accession": "O34648", "uniprot_release": "2026_03" } ], "pfam_id": "PF04020", "short_name": "Phage_holin_4_2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 9, "discovery_scanned": true, "example_count": 9, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/class-iii-signal-peptide-motif-ipr007166.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007166", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/class-iii-signal-peptide-motif-ipr007166.yaml" } ], "pfam_ids": [ "PF04021" ], "protein_name": "Probable pilin MJ0832.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKFRKRGQISLEFSLLFLGVLLAIVIAVGYPGMFGFNKTVSISSMSLAHAAVSKMKQNIELVSSADEGTMKIVYIKCPPGTWGANNNILYFYRDGNIKFNITAKCDINIILNGNKTVSTPKIIIANITKIDETHVIVTLYQ", "sequence_length": 142, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b19ad67deeb196a73a51aa610b607f808e5a7bc87b12b83d3b07b9e35226ba6c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P81322.json", "taxon_id": "243232", "uniprot_accession": "P81322", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/class-iii-signal-peptide-motif-ipr007166.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007166", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/class-iii-signal-peptide-motif-ipr007166.yaml" } ], "pfam_ids": [ "PF04021" ], "protein_name": "Probable pilin MJ0835.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTMENKIIKSKKAQVSLEFSFLFLAILLASIITISHFLSQNFTKDDKVISDVENAAKTAVILANSGYNGINPNVTLIYGGISWSGNKKNIYIYISPKSYITPEIKNFIVSYIYNVTKINQSEYNITVNP", "sequence_length": 130, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ba36a65a4900f20f031c99c172c5bb2bc1c52356d2917149fc3789d61b1f4117", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P81323.json", "taxon_id": "243232", "uniprot_accession": "P81323", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/class-iii-signal-peptide-motif-ipr007166.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007166", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/class-iii-signal-peptide-motif-ipr007166.yaml" } ], "pfam_ids": [ "PF04021" ], "protein_name": "Probable pilin MJ0431", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKMKILKKLLSKKGQLSMEVGVLVAAAVLVAIIAAYFYVKNAKSAVASAGNKSAAFINVTANKSQEYISNLSNI", "sequence_length": 75, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3793d1a043150ea4ba4a14798f7c70909723e9a000aa010868a511c58d55191c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57873.json", "taxon_id": "243232", "uniprot_accession": "Q57873", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/class-iii-signal-peptide-motif-ipr007166.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007166", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/class-iii-signal-peptide-motif-ipr007166.yaml" } ], "pfam_ids": [ "PF04021" ], "protein_name": "Probable pilin MJ1400", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFIMKFIKSNKGQISLEFSLLVMVVVLSAIIVSYYLIKTAIETRNANMDVINQSSNVAEKSLSNVT", "sequence_length": 67, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "735732d1016f40b5039c878ec027f9f7d32cb3e37c5c41a935ce813ec9729d31", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58795.json", "taxon_id": "243232", "uniprot_accession": "Q58795", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/class-iii-signal-peptide-domain-containing-protein-archaeosortase-d-pi-tigr04205.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR04205", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/class-iii-signal-peptide-domain-containing-protein-archaeosortase-d-pi-tigr04205.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/class-iii-signal-peptide-motif-ipr007166.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007166", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/class-iii-signal-peptide-motif-ipr007166.yaml" } ], "pfam_ids": [ "PF04021" ], "protein_name": "Probable pilin MJ1469", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKPKKIISNKAQISLELALLLGALVVAASIVGFYYLKSVTRGTSTAESISKNITLAAKNKALDNIYKVKRALNGQ", "sequence_length": 75, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8cc106b4580403ef85a733299c8deacbece77b6f2b61b0efeecf2e7cc706e5aa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58864.json", "taxon_id": "243232", "uniprot_accession": "Q58864", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/class-iii-signal-peptide-motif-ipr007166.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007166", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/class-iii-signal-peptide-motif-ipr007166.yaml" } ], "pfam_ids": [ "PF04021" ], "protein_name": "Uncharacterized protein MJ0018", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIFKKRKGQLTLEFILLILGMTVVGIVITMGLVEKSPIFIGDKPLEVKKETMGLFINESKFNLTVENTTISNLGNNNTESNNSNNETGGGYLYIRVSGSSKGLITKDLIVSGDAKDVSGDISKTINSKCVEENAIGEVYGDIYLEGSANYKLGNLLCINKFQTYLTGSGSLKVYVPYIQEFIIRDKNSGESQIGGSVSLTVGNTNINRFYVEKITGGAKVKFKDFAINTFETNSGNFGGGAETVFENGRISTMKLGDIVSGGNVKFKNVNIGNMIINNMIGSPTFELSNSTINNMKINKLIGSPKILVEDSSIINSLETDQLGGSDIEVKDGSIIKEITIHGSTGTNGKIFVGYGGKVEKLFVEGNINSRIDLKGFSGLIDVSIGNIAGGGKLYVDNVIGNSISTGIIGNNKGLEIEDSSLSVVNIEGVSNSGSAFIKNTLIYQLKINSLPDWGSDMTLNKVNITKLSINEIRNGKLTIKNSEIGELHITKISGKGKIIVKKSYVNGKYYKKLVIKKSNYKKWS", "sequence_length": 524, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dee988ce436de548b14812f510da44be5034dc1a4ee6d3e861ed6f8580c0ee54", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q60324.json", "taxon_id": "243232", "uniprot_accession": "Q60324", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)", 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"https://rest.uniprot.org/uniprotkb/Q6LWM4.json", "taxon_id": "267377", "uniprot_accession": "Q6LWM4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/class-iiisignal-pf04021.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04021", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/class-iiisignal-pf04021.yaml" } ], "pfam_ids": [ "PF04021" ], "protein_name": "Minor structural pilin EpdD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, 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"ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/glyco-hydro-130-pf04041.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04041", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/glyco-hydro-130-pf04041.yaml" } ], "pfam_ids": [ "PF04041" ], "protein_name": "Beta-1,4-mannooligosaccharide phosphorylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTQIINGVSLPNIPWQDKPADCKDVIWRYDANPIIPRDQLPTSNSIFNSAVVPYESEKGKFAGVFRVDDKCRNMELHAGFSKDGIHWDINPDRIVFEQAEKSTEEVNQWGYGYDPRVCFIEDRFWVTWCNAYGWKPTIGVAYTFDFKTFYQCENAFLPFNRNGVLFPRKINGKYVMFSRPSDSGHTPFGDMFISQSPDMKYWGEHRHVMGPLRAWESKKIGAGPIPIETSEGWLCFYHGVLESCNGFVYSFSACILDKDEPWKVKYRCAEYLLSPQKIYECVGDVQNVTFPCATLVDADTGRIAIYYGCADTCVSMAFTTVDDVVDYVKSHSSV", "sequence_length": 335, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9674838628eb631e1a3819e5084587dfbc5d8006d9849594a84c56d07196d534", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E6UBR9.json", "taxon_id": "697329", "uniprot_accession": "E6UBR9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/glyco-hydro-130-pf04041.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04041", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/glyco-hydro-130-pf04041.yaml" } ], "pfam_ids": [ "PF04041" ], "protein_name": "1,4-beta-mannosyl-N-acetylglucosamine phosphorylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKIQIPWEERPVGCTDVMWRYSQNPVIGRYHIPSSNSIFNSAVVPFKDGFAGVFRCDNKAVQMNIFTGFSKDGIHWDISHEPIQFKAGNTEMIESEYKYDPRVTWIEDRYWVTWCNGYHGPTIGIAYTFDFVDFFQCENAFLPFNRNGVLFPQKIDGKYAMLSRPSDNGHTPFGDIYISYSPDMKYWGEHRCVMKVTPFPESAWQCTKIGAGSVPFLTDEGWLLFYHGVITTCNGFRYAMGSAILDKDHPEKVLYRTREYLIGPAAPYELQGDVPNVVFPCAALQDGERVAVYYGAADTVVGMAFGYIQEIIDFTKRTSII", "sequence_length": 322, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3694fb50abf7045c518fc5cadb751f667981c5bce4fa879de782605da842f776", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8A8Y4.json", "taxon_id": "226186", "uniprot_accession": "Q8A8Y4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/glyco-hydro-130-pf04041.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04041", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/glyco-hydro-130-pf04041.yaml" } ], "pfam_ids": [ "PF04041" ], "protein_name": "Beta-1,2-mannobiose phosphorylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIYRYEENPLITPLDVKPIHEGFEVIGAFNGGVAEYNGEVLLLLRVAEKPVSEDPEIVLAPVYNAKNKELELQSFRLDDENYDFEDPRMIRSKAKLEGFSYLTSLSYIRIARSKDGHHFTLDEKPFLYPFNEYQTFGIEDARVTQIGDTYHVNFSAVSEFGVADALVTTKDFENLEYQGNIFAPENKDVLIFPEKINGKYYALHRPSLKSIGNLDIWIASSPDLRSFGDHRHLLGIRPGEYDSGRVGGGCVPIKTEEGWLILYHGATEENRYVMGAALLDLNDPTIVLKRTKTPILEPVADYEKNGFFGDVVFACGAIQEGDTLHMYYGVADTSMAGCDMKISEILHQLEVEAK", "sequence_length": 355, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "193fef85793a058da564a5531fccbd39552bb5007c506fff4f95cc0975ff11c9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q92DF6.json", "taxon_id": "272626", "uniprot_accession": "Q92DF6", "uniprot_release": "2026_03" } ], "pfam_id": "PF04041", "short_name": "Glyco_hydro_130", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-hgh1-c-terminal-ipr007206.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007206", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-hgh1-c-terminal-ipr007206.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-hgh1-n-terminal-ipr007205.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007205", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-hgh1-n-terminal-ipr007205.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf384-pf04064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf384-pf04064.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf383-pf04063.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf383-pf04063.yaml" } ], "pfam_ids": [ "PF04063", "PF04064" ], "protein_name": "Co-chaperone protein HGH1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSQLNELVEFLHSPQPAVRQIAIDNLVGFSAGPTSKVFKNDSYRPIKDIIKMIMDPEHGTRVIIQQGVTILVNLSEDKLVRNIILSDDKKFLKFLVWKIVDLTNPNADIMCILLSNLAKDDGILAVLNIKRNSSGEEVDDGLKLAALNKEVFKSLRAMDCLMDCFVKGYDKKLTKYASFNYLAFFFADISRFKLGRMYFIEEQEYDGVVPISKLLVFTEKYDAKVRREGVASTIKNSLFDSETHERLLKDEKINLLPYILLPIASAKDSEIDEEDMFNLPDELQLLPEDKERDPIPAIICCHLESILLLCTTHAGREYLRDKSVYPLVRELHKNVENEDIGELCYRIVNMLMRGEPGAGAVEEMPSKNAEEEEEEESEEEEDDDEEDEIVEVA", "sequence_length": 394, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7c264343daf69541240ea039ec5c4c59433eec6c2adbc353acb93b7bf5b3a3fb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P48362.json", "taxon_id": "559292", "uniprot_accession": "P48362", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyostelium discoideum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf384-pf04064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf384-pf04064.yaml" } ], "pfam_ids": [ "PF04063", "PF04064" ], "protein_name": "Co-chaperone protein HGH1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDQLPELVPFLLEPKSEIKLLALQHLLGVSDNQEARDILKSTQIINNCIKLITDSNHVVVRHALTILINLCQDTDMLNDIVKKNIVPRLVDGTTDTKNKMSEIFAMLLSNVTHTKEGCLSLMQCGKELEAFFIMKLVQVLTMDSNQEDYFKSTKNNWIVNIILNVTQIQEGRKIVLDKENQIFKEILPLVRHENVIKRRGILGIIRNCCYSEQHHDYLISPEVDILTKLCLPIRGNDKLDDDDLVGLHIDLHNSSLPIGNERDQDRECRKMVVESLIFLTGTKKGRVSMRTAKIYPILRNLFNFETEEELRDNVEKVVELIIRDEEGDPTPEEIEQMNKKQKLEDEDAQFETDEI", "sequence_length": 355, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "00e09df63356891a242da4203cd6fe09bbda5c79e0c7d2347f81dfacd34384b3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q76NW7.json", "taxon_id": "44689", "uniprot_accession": "Q76NW7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-hgh1-c-terminal-ipr007206.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007206", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-hgh1-c-terminal-ipr007206.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-hgh1-n-terminal-ipr007205.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007205", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-hgh1-n-terminal-ipr007205.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf383-pf04063.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf383-pf04063.yaml" } ], "pfam_ids": [ "PF04063", "PF04064" ], "protein_name": "Co-chaperone protein HGH1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRGPGVGSGFSGERGLLEQEAGADTEAVELLPFLVLGARADLQAAAAQHVLALTGAGSGRTLLAGQPELLRALVDLAVAPAPAPSRDASRALVNLAADPNVHWQLLAADPELPARLLRCVLDPQWPWAEEAAAVLANLSREPAPCAALMEKLMAAEPERLGLERLVNALCTPSYNAAAPLHYLGPLLSNLSQQAEVRAFLLDPDRCVVQRLLPLTQYTDSSVRRGGVVGTLRNCCFEHRHHKWLLGAQVDILPFLLLPLAGPEEFSEEEMDQLPVDLQYLSPDKQREPDADIRKMLIEAVMLLTATAPGRKQVRDQGAYLILRELHSWEPEPDVRMACEKLIQVLIGDEPEAGMENLLEVQVPEDVEQQLQELDQQEQQELAQELRGNGAPHT", "sequence_length": 393, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "69fdf9a649935d78852fa39a7307c8f1cf4f999c10195c3b77e41532ecef40d7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C3I8.json", "taxon_id": "10090", "uniprot_accession": "Q8C3I8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-hgh1-c-terminal-ipr007206.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007206", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-hgh1-c-terminal-ipr007206.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-hgh1-n-terminal-ipr007205.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007205", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-hgh1-n-terminal-ipr007205.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf384-pf04064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf384-pf04064.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf383-pf04063.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf383-pf04063.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9BTY7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04063", "PF04064" ], "protein_name": "Co-chaperone protein HGH1 homolog", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "5d84380695039ddd7ed329a22b19a33a0dc8b6b40f1a52b040f2a166be0cdcfe", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGEAGAGAGASGGPEASPEAEVVKLLPFLAPGARADLQAAAVRHVLALTGCGPGRALLAGQAALLQALMELAPASAPARDAARALVNLAADPGLHETLLAADPGLPARLMGRALDPQWPWAEEAAAALANLSREPAPCAALMAALAAAEPADSGLERLVRALCTPGYNARAPLHYLAPLLSNLSQRPAARAFLLDPDRCVVQRLLPLTQYPDSSVRRGGVVGTLRNCCFEHRHHEWLLGPEVDILPFLLLPLAGPEDFSEEEMERLPVDLQYLPPDKQREPDADIRKMLVEAIMLLTATAPGRQQVRDQGAYLILRELHSWEPEPDVRTACEKLIQVLIGDEPERGMENLLEVQVPEDVEQQLQQLDCREQEQLERELAPEPWVERATPT", "sequence_length": 390, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "5d84380695039ddd7ed329a22b19a33a0dc8b6b40f1a52b040f2a166be0cdcfe", "sequence_version": 1, 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"NOT_ASSESSED", "record_id": "Pfam:PF04063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf383-pf04063.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9BTY7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04063", "PF04064" ], "protein_name": "Co-chaperone protein HGH1 homolog", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": 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"NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P35155", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04079" ], "protein_name": "Segregation and condensation protein B", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c8b1402774171261ffbc4a659aa8b36a9b2fdf2ca3150bba242038c78e4e55b7", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGLDIVNWKAIVEALLYAAGDEGLTKKQLLTVLEIEEPELNTIMADVADEYRGDTRGIELIEYADTYMLSTKKDFAPYLKKLIEVPSKGLSQASLEVLAIVSYKQPITRAEIEEIRGVKSERILHSLVAKALLCEVGRADGPGRAILYGTTPTFLEQFGLKTLDELPPLPENAEEDVLQEEADLFFENFNQTFEDIK", "sequence_length": 197, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c8b1402774171261ffbc4a659aa8b36a9b2fdf2ca3150bba242038c78e4e55b7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P35155.json", "taxon_id": "224308", "uniprot_accession": "P35155", "uniprot_release": "2026_03" } ], "pfam_id": "PF04079", "short_name": "SMC_ScpB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/uncharacterized-hydrophobic-domain-tigr00271.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf389-pf04087.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf389-pf04087.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q58091", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04087" ], "protein_name": "Uncharacterized protein MJ0678", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7c6178d7ab1ba28b9defe9aaee226bf15aeb2192d6d7f1f15cbcb037bbaeedc0", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKLRFIECHIPKHLFMGIDEIREWDGVIWANVKTNGTISTIQILTTLKDSEKIVDKLKEMYGGANYRVVVFEPTMTYPPIEEEEEKEEPERLIREELYNIASDIANLSKENMLMLILSTIVAIAGIYKDDVALLIASMIIAPLLGPNIALSLSITVADYKLALKSIKTLIAELIFVIILSMIAGHYLPISLDNPQIHSRITLDFWSIIIALSAGIAGSLSTVSNISSIAVGVMIAIALLPPLAVFGLLIGAGYVEQSFSALILFLINMIAINLSAIVIFSAYGISPYRWWKKEEARKYTLYAILLWVTLFIAIFVLIIYH", "sequence_length": 320, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7c6178d7ab1ba28b9defe9aaee226bf15aeb2192d6d7f1f15cbcb037bbaeedc0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58091.json", "taxon_id": "243232", "uniprot_accession": "Q58091", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/tigr00341-family-protein-tigr00341.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00341", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/tigr00341-family-protein-tigr00341.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/uncharacterized-hydrophobic-domain-tigr00271.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00271", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/uncharacterized-hydrophobic-domain-tigr00271.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf389-pf04087.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf389-pf04087.yaml" } ], "pfam_ids": [ "PF04087" ], "protein_name": "Uncharacterized protein MJ1221", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWFGERMRYMKIIIPKKFLNTVEEILKKNNAYSISIIEPLKTSIEDGIIITCNADARDAEKIVLELKKLGLGEKGHGSVTIMPANITFSCREEGIASTSLSPLELYYKAKTMVKITKNVIIKVILASIMGVIGLIEHNIPTLIGAMIIAPLVDTVMGSAIGTVLGDKELFIQGMKKELLCSGIVIVCAFIPSLFFVSKELVLQYLSETSIILSAIVAIIAGISGGMSIASGKEYEIIGVTIDVSILIPALLMGMALATMDLYLIYITFILLAINIVLLDVGGYIGLKYKVGKINQKIKY", "sequence_length": 299, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "31119593457a96c54aedfbcc0bc0f4d52f78c87e3704baaf6039a384bee4dc3d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58618.json", "taxon_id": "243232", "uniprot_accession": "Q58618", "uniprot_release": "2026_03" } ], "pfam_id": "PF04087", "short_name": "DUF389", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf373-pf04123.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04123", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf373-pf04123.yaml" } ], "pfam_ids": [ "PF04123" ], "protein_name": "Uncharacterized protein AF_2058", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKKLVLVIDRDDDLGQKAGISSPVIGRDNIVSAAVRLGTADPEDSDVNAMFAAIKIYDELKGRGEDVEVVVVCGDRSVGVVSDSKIAEQLDRVVLNLRPSSAIVVTDGSEDEFVLPIISSRVKIDSVHRVVVRQSRTIESTYFLIRRMLNDPKIARITLAPLGMIFLVYSIFLVMQHPEWGLGGIIFFLGVYFMVKAYGWEQNIANLLETVRVSLVEGRLSFIFYVTSAILLIISIVNGFNAAVNIADAAQAISSFIFYSTWWFVLSGIFALLARAADAYAEKRRVSKYFTIIFLLIAFGLIVWASAAYVLNPEAPNALQNLAGAIVGAILIAAIGVFTLKRL", "sequence_length": 344, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b8beb4089b46116386f0ae33a99cba387bc17d66b808a29eb63453a9fd090ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O28221.json", "taxon_id": "224325", "uniprot_accession": "O28221", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf373-pf04123.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04123", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf373-pf04123.yaml" } ], "pfam_ids": [ "PF04123" ], "protein_name": "Uncharacterized protein MJ1032", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKEGVKNYLVLVVDIDDDIGRKAGLNTPILGREENIKALIKLGLADPGDSDVNAILGGVKIYDELKASGKDVEIATISGDVDVESEKCALRIKEQIDFLLYLYNPDFIYLVSDGKEDEMILKYLESKNIFVWKKRVIVKQSETLESTYYLIQEFIKKTMEEYIPLILTFIGFSLILYAIFADIGWRIVVGIIGLYILSEGVGVRKLLMEKIKKKEEFDVGRVFPISASISIFILIIGLIYSLSSINKTSSTLTEFIGEFLLHFVDSLTLSLLILMVGKFVDTIINSEKDLLEILKKYFFCLICIFISRELIISGGEYLLKKISFIMFVMCVIIYISIVIILSVILFTKSSKEDKFKKLKNSITKG", "sequence_length": 366, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4d4fbc8837d23f7dfab6c7d9eb684d20d72741d78a11e21be5fecd16f61d982c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58438.json", "taxon_id": "243232", "uniprot_accession": "Q58438", "uniprot_release": "2026_03" } ], "pfam_id": "PF04123", "short_name": "DUF373", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04126", "short_name": "Cyclophil_like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dcc1-like-pf04134.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04134", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dcc1-like-pf04134.yaml" } ], "pfam_ids": [ "PF04134" ], "protein_name": "Uncharacterized protein YuxK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSEQIPNRVLLFDGVCNLCNGAVQFIIKRDPDGLISFTSLQSETGQSLLKKSGLPTDRFDSFVFIEDGQVYTKSTAAIKVFRHLRGPWRLFVLFFAVPKPVRDMVYSFIAKNRYKWFGKKNECMLPSPSIKKRFLP", "sequence_length": 137, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "76132a3a5e1f27858a993e7681ae08383b749f06f061963c2bc052ca9e946635", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40761.json", "taxon_id": "224308", "uniprot_accession": "P40761", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dcc1-like-pf04134.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04134", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dcc1-like-pf04134.yaml" } ], "pfam_ids": [ "PF04134" ], "protein_name": "Uncharacterized protein At5g50100, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATRGAVAAAASTIWKHRRNPSLRSLSRHFNPNFNHRIIPTGFKYQVRAIQGTSTDPVITPLKNREEPKPQNWKIKMLYDGDCPLCMREVNMLMERNEKHGTIKFVDISSNDYSPEDNQGLDYKTVMGQIHAIQSDGNVVKGVEAFRRLYEEVGLGWVYTITKFEPIGKLADVVYDVWAKYRLQVTGRPSIEAILEARKKDKVETCGESKNCKI", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4fe648c408c30efed5e5257c469e7299740f15c6a102ca76245b33250add72a6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8W485.json", "taxon_id": "3702", "uniprot_accession": "Q8W485", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dcc1-like-pf04134.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04134", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dcc1-like-pf04134.yaml" } ], "pfam_ids": [ "PF04134" ], "protein_name": "DCC family protein At1g52590, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAILIPASFGRLTITSRAQVRVRVSASANQRTIRRDSVDWVKETSSFFEEDKRPIMLFDGVCNLCNGGVKFVRDHDRNRSIRFEALQSEAGKKLLLRSGRAPDDISSVVLVENDRSYIKSEAVLKIMKYIDLPFPQLAFFLQFAPLFVRDFLYENVANNRYAMFGRSDSCEL", "sequence_length": 172, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c29ae83bd4be92c770d92744fcd2875de5697d6c0696b0d85739448d5cabbe63", 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"data/traits/structure/homologous_superfamily/cath/fomd-like-2-40-380-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.40.380.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/fomd-like-2-40-380-10.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q796Z1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04167" ], "protein_name": "Nucleoside triphosphate/diphosphate phosphatase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ef9418aa057f1ac036138812be4c6ff34ecf5f0b65a5d3e39eeb82bcab1b2181", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGYPKEGETIQIHSYKHNGLIHRIWNETTILKSTEMCVIGANDRTMVTESDGRTWITREPAICYFHARQWFNVIGMLREDGVHYYCNISSPFAYDGEAIKYIDYDLDVKVFPDMTYNILDEDEYDDHRKAMNYPKEIDSILRDYLNTLLHWIHQRQGPFAPEFVDMWYERYLRYTK", "sequence_length": 176, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ef9418aa057f1ac036138812be4c6ff34ecf5f0b65a5d3e39eeb82bcab1b2181", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q796Z1.json", "taxon_id": "224308", "uniprot_accession": "Q796Z1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain N315)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf402-pf04167.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04167", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf402-pf04167.yaml" } ], "pfam_ids": [ "PF04167" ], "protein_name": "Nucleoside triphosphate/diphosphate phosphatase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVRESIPKEGENIKIQSYKHDGKIHRVWSETTILKGTDHVVIGGNDHTLVTESDGRTWITREPAIVYFHSEYWFNVICMFREDGIYYYCNLSSPFVCDEEALKYIDYDLDIKVYPNGKYHLLDEDEYEQHMNQMNYPHDIDIILRRNVDILQQWIEQKKGPFAPDFIKVWKERYKKIRQY", "sequence_length": 180, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e51672960cc30b8c8f13ec0e76244070ddc480346588c2a0bb3c76c563589336", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7A4T2.json", "taxon_id": "158879", "uniprot_accession": "Q7A4T2", "uniprot_release": "2026_03" } ], "pfam_id": "PF04167", "short_name": "DUF402", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/alpha-e-pf04168.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/alpha-e-pf04168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cp-atpgrasp-1-pf04174.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cp-atpgrasp-1-pf04174.yaml" } ], "pfam_ids": [ "PF04168", "PF04174" ], "protein_name": "Uncharacterized protein Mb2597", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPSASAATNGYDVDRLLAGYRTARAQETLFDLRDGPGAGYDEFVDDDGNVRPTWTELADAVAERGKAGLDRLRSVVHSLIDHDGITYTAIDAHRDALTGDHDLEPGPWRLDPLPLVISAADWEVLEAGLVQRSRLLDAILADLYGPRSMLTEGVLPPEMLFAHPGYVRAANGIQMPGRHQLFMHACDLSRLPDGTFQVNADWTQAPSGSGYAMADRRVVAHAVPDLYEELAPRPTTPFAQALRLALIDAAPDVAQDPVVVVLSPGIYSETAFDQAYLATLLGFPLVESADLVVRDGKLWMRSLGTLKRVDVVLRRVDAHYADPLDLRADSRLGVVGLVEAQHRGTVTVVNTLGSGILENPGLLRFLPQLSERLLDESPLLHTAPVYWGGIASERSHLLANVSSLLIKSTVSGETLVGPTLSSAQLADLAVRIEAMPWQWVGQELPQFSSAPTNHAGVLSSAGVGMRLFTVAQRSGYAPMIGGLGYVLAPGPAAYTLKTVAAKDIWVRPTERAHAEVITVPVLAPPAKTGAGTWAVSSPRVLSDLFWMGRYGERAENMARLLIVTRERYHVFRHQQDTDESECVPVLMAALGKITGYDTATGAGSAYDRADMIAVAPSTLWSLTVDPDRPGSLVQSVEGLALAARAVRDQLSNDTWMVLANVERAVEHKSDPPQSLAEADAVLASAQAETLAGMLTLSGVAGESMVHDVGWTMMDIGKRIERGLWLTALLQATLSTVRHPAAEQAIIEATLVACESSVIYRRRTVGKFSVAAVTELMLFDAQNPRSLVYQLERLRADLKDLPGSSGSSRPERMVDEMNTRLRRSHPEELEEVSADGLRAELAELLAGIHASLRDVADVLTATQLALPGGMQPLWGPDQRRVMPA", "sequence_length": 884, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6137baabd5d070d9e52eee8c17215306615af63fa45d871f70859515c06c4809", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P59974.json", "taxon_id": "233413", "uniprot_accession": "P59974", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/alpha-e-pf04168.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/alpha-e-pf04168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cp-atpgrasp-1-pf04174.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cp-atpgrasp-1-pf04174.yaml" } ], "pfam_ids": [ "PF04168", "PF04174" ], "protein_name": "Uncharacterized protein MT2643", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPSASAATNGYDVDRLLAGYRTARAQETLFDLRDGPGAGYDEFVDDDGNVRPTWTELADAVAERGKAGLDRLRSVVHSLIDHDGITYTAIDAHRDALTGDHDLEPGPWRLDPLPLVISAADWEVLEAGLVQRSRLLDAILADLYGPRSMLTEGVLPPEMLFAHPGYVRAANGIQMPGRHQLFMHACDLSRLPDGTFQVNADWTQAPSGSGYAMADRRVVAHAVPDLYEELAPRPTTPFAQALRLALIDAAPDVAQDPVVVVLSPGIYSETAFDQAYLATLLGFPLVESADLVVRDGKLWMRSLGTLKRVDVVLRRVDAHYADPLDLRADSRLGVVGLVEAQHRGTVTVVNTLGSGILENPGLLRFLPQLSERLLDESPLLHTAPVYWGGIASERSHLLANVSSLLIKSTVSGETLVGPTLSSAQLADLAVRIEAMPWQWVGQELPQFSSAPTNHAGVLSSAGVGMRLFTVAQRSGYAPMIGGLGYVLAPGPAAYTLKTVAAKDIWVRPTERAHAEVITVPVLAPPAKTGAGTWAVSSPRVLSDLFWMGRYGERAENMARLLIVTRERYHVFRHQQDTDESECVPVLMAALGKITGYDTATGAGSAYDRADMIAVAPSTLWSLTVDPDRPGSLVQSVEGLALAARAVRDQLSNDTWMVLANVERAVEHKSDPPQSLAEADAVLASAQAETLAGMLTLSGVAGESMVHDVGWTMMDIGKRIERGLWLTALLQATLSTVRHPAAEQAIIEATLVACESSVIYRRRTVGKFSVAAVTELMLFDAQNPRSLVYQLERLRADLKDLPGSSGSSRPERMVDEMNTRLRRSHPEELEEVSADGLRAELAELLAGIHASLRDVADVLTATQLALPGGMQPLWGPDQRRVMPA", "sequence_length": 884, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6137baabd5d070d9e52eee8c17215306615af63fa45d871f70859515c06c4809", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WL96.json", "taxon_id": "83331", "uniprot_accession": "P9WL96", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/alpha-e-pf04168.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/alpha-e-pf04168.yaml" } ], "pfam_ids": [ "PF04168", "PF04174" ], "protein_name": "Uncharacterized protein Rv2567", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPSASAATNGYDVDRLLAGYRTARAQETLFDLRDGPGAGYDEFVDDDGNVRPTWTELADAVAERGKAGLDRLRSVVHSLIDHDGITYTAIDAHRDALTGDHDLEPGPWRLDPLPLVISAADWEVLEAGLVQRSRLLDAILADLYGPRSMLTEGVLPPEMLFAHPGYVRAANGIQMPGRHQLFMHACDLSRLPDGTFQVNADWTQAPSGSGYAMADRRVVAHAVPDLYEELAPRPTTPFAQALRLALIDAAPDVAQDPVVVVLSPGIYSETAFDQAYLATLLGFPLVESADLVVRDGKLWMRSLGTLKRVDVVLRRVDAHYADPLDLRADSRLGVVGLVEAQHRGTVTVVNTLGSGILENPGLLRFLPQLSERLLDESPLLHTAPVYWGGIASERSHLLANVSSLLIKSTVSGETLVGPTLSSAQLADLAVRIEAMPWQWVGQELPQFSSAPTNHAGVLSSAGVGMRLFTVAQRSGYAPMIGGLGYVLAPGPAAYTLKTVAAKDIWVRPTERAHAEVITVPVLAPPAKTGAGTWAVSSPRVLSDLFWMGRYGERAENMARLLIVTRERYHVFRHQQDTDESECVPVLMAALGKITGYDTATGAGSAYDRADMIAVAPSTLWSLTVDPDRPGSLVQSVEGLALAAQAVRDQLSNDTWMVLANVERAVEHKSDPPQSLAEADAVLASAQAETLAGMLTLSGVAGESMVHDVGWTMMDIGKRIERGLWLTALLQATLSTVRHPAAEQAIIEATLVACESSVIYRRRTVGKFSVAAVTELMLFDAQNPRSLVYQLERLRADLKDLPGSSGSSRPERMVDEMNTRLRRSHPEELEEVSADGLRAELAELLAGIHASLRDVADVLTATQLALPGGMQPLWGPDQRRVMPA", "sequence_length": 884, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f68bd8fc573def12fcd0504a89dc32343d78e1c3a17d78c3c707601cc843fa39", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WL97.json", "taxon_id": "83332", "uniprot_accession": "P9WL97", "uniprot_release": "2026_03" } ], "pfam_id": "PF04168", "short_name": "Alpha-E", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/alpha-e-pf04168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/alpha-e-pf04168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cp-atpgrasp-1-pf04174.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cp-atpgrasp-1-pf04174.yaml" } ], "pfam_ids": [ "PF04168", "PF04174" ], "protein_name": "Uncharacterized protein Mb2597", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPSASAATNGYDVDRLLAGYRTARAQETLFDLRDGPGAGYDEFVDDDGNVRPTWTELADAVAERGKAGLDRLRSVVHSLIDHDGITYTAIDAHRDALTGDHDLEPGPWRLDPLPLVISAADWEVLEAGLVQRSRLLDAILADLYGPRSMLTEGVLPPEMLFAHPGYVRAANGIQMPGRHQLFMHACDLSRLPDGTFQVNADWTQAPSGSGYAMADRRVVAHAVPDLYEELAPRPTTPFAQALRLALIDAAPDVAQDPVVVVLSPGIYSETAFDQAYLATLLGFPLVESADLVVRDGKLWMRSLGTLKRVDVVLRRVDAHYADPLDLRADSRLGVVGLVEAQHRGTVTVVNTLGSGILENPGLLRFLPQLSERLLDESPLLHTAPVYWGGIASERSHLLANVSSLLIKSTVSGETLVGPTLSSAQLADLAVRIEAMPWQWVGQELPQFSSAPTNHAGVLSSAGVGMRLFTVAQRSGYAPMIGGLGYVLAPGPAAYTLKTVAAKDIWVRPTERAHAEVITVPVLAPPAKTGAGTWAVSSPRVLSDLFWMGRYGERAENMARLLIVTRERYHVFRHQQDTDESECVPVLMAALGKITGYDTATGAGSAYDRADMIAVAPSTLWSLTVDPDRPGSLVQSVEGLALAARAVRDQLSNDTWMVLANVERAVEHKSDPPQSLAEADAVLASAQAETLAGMLTLSGVAGESMVHDVGWTMMDIGKRIERGLWLTALLQATLSTVRHPAAEQAIIEATLVACESSVIYRRRTVGKFSVAAVTELMLFDAQNPRSLVYQLERLRADLKDLPGSSGSSRPERMVDEMNTRLRRSHPEELEEVSADGLRAELAELLAGIHASLRDVADVLTATQLALPGGMQPLWGPDQRRVMPA", "sequence_length": 884, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6137baabd5d070d9e52eee8c17215306615af63fa45d871f70859515c06c4809", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P59974.json", "taxon_id": "233413", "uniprot_accession": "P59974", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cp-atpgrasp-1-pf04174.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cp-atpgrasp-1-pf04174.yaml" } ], "pfam_ids": [ "PF04174" ], "protein_name": "Uncharacterized protein Mb2434c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRVSLPNQLNETRRRSPTRGERIFGGYNTSDVYAMAFDEMFDAQGIVRGPYKGIYAELAPSDASELKARADALGRAFIDQGITFSLSGQERPFPLDLVPRVISAPEWTRLERGITQRVKALECYLDDIYGDQEILRDGVIPRRLVTSCEHFHRQAVGIVPPNGVRIHVAGIDLIRDHRGDFRVLEDNLRSPSGVSYVMENRRTMARVFPNLFATHRVRAVDDYASHLLRALRNSAATNEADPTVVVLTPGVYNSAYFEHSLLARQMGVELVEGRDLFCRDNQVYMRTTEGERQVDVIYRRIDDAFLDPLQFRADSVLGVAGLVNAARAGNVVLSSAIGNGVGDDKLVYTYVPTMIEYYLHEKPLLANVETLRCWLDDEREEVLDRIRELVLKPVEGSGGYGIVFGPEASQAELAAVSQKIRDDPRSWIAQPMMELSTVPTRIEGTLAPRYVDLRPFAVNDGNEVWVLPGGLTRVALVEGSRVVNSSQGGGSKDTWVLAPRASAAARELGAAQIVRSLPQPLCDPTVDASGYEPHDQQPQQQQQQQQQAFH", "sequence_length": 551, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1da68ff302e5fae93e5327b8536465469f346d1b9c74733dad626f22bbf3c941", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P65002.json", "taxon_id": "233413", "uniprot_accession": "P65002", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/alpha-e-pf04168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/alpha-e-pf04168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cp-atpgrasp-1-pf04174.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cp-atpgrasp-1-pf04174.yaml" } ], "pfam_ids": [ "PF04168", "PF04174" ], "protein_name": "Uncharacterized protein MT2643", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"data/traits/sequence/repeat/pfam/get4-pf04190.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04190", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/get4-pf04190.yaml" } ], "pfam_ids": [ "PF04190" ], "protein_name": "Protein GET4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRERIKRELPPVQEHIDKLRKVIEEGNYYGALQMYKSISARYVTAQRFSEALDILFSGACIELEHGLVNCGADLAILFVDTLVKAKSPCNDETLDRIRCIFKLFPRVPVPPHLVDVSDDEDVQNLQESLGEARSRVENLTSFLRAAIKWSAEFGGPRTGYPELHAMLGDYLYTECPELDMVRISRHFVRAEDPEKFASMLVNFMGRCYPGEDDLAIARAVLMYLSMGNMKDANFMMDEIKKQAETKNPELSESDLIQFISYLLETLQRDALPLFNMLRVKYKSSIDRDQLLNELLDEIAERFYGVQRKNPLQGMFGDIFKMMG", "sequence_length": 324, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8cb020229603499505c02005d05eee581104b1bf11e7f22b58b39a316850757c", "sequence_version": 1, "source_url": 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"83333", "uniprot_accession": "Q47150", "uniprot_release": "2026_03" } ], "pfam_id": "PF04221", "short_name": "RelB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhi", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf416-pf04222.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04222", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf416-pf04222.yaml" } ], "pfam_ids": [ "PF04222" ], "protein_name": "Uncharacterized protein YjaG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQNPIHLRLERLESWQHVTFMACLCERMYPNYAMFCKQTEFGDGQIYRRILDLIWETLTVKDAKVNFDSQLEKFEEAIPAADDYDLYGVYPAIDACVALSELMHSRLSGETLEHAIEVSKTSITTVAMLEMTQAGREMTDEELKTNPAVEQEWDIQWEIFRLLADCEERDIELIKGLRADLREAGESNIGINFQQ", "sequence_length": 196, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d24488a0ac9a878f8ef20b284ca5122c92e160487ec28797f6afe8ae44558c6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A1U5.json", "taxon_id": "90370", "uniprot_accession": "P0A1U5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf416-pf04222.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04222", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf416-pf04222.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/yp001051499-1-like-domain-superfamily-ipr023381.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023381", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yp001051499-1-like-domain-superfamily-ipr023381.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/yp-001051499-1-domain-like-1-20-1590-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1590.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yp-001051499-1-domain-like-1-20-1590-10.yaml" } ], "pfam_ids": [ "PF04222" ], "protein_name": "Uncharacterized protein YjaG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQNPIHLRLERLESWQHVTFMACLCERMYPNYAMFCQQTGFGDGQIYRRILDLIWETLTVKDAKVNFDSQLEKFEEAIPSADDFDLYGVYPAIDACVALSELVHSRLSGETLEHAVEVSKTSITTVAMLEMTQAGREMSDEELKENPAVEQEWDIQWEIFRLLAECEERDIELIKGLRADLREAGESNIGIIFQQ", "sequence_length": 196, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9ecd0d2421a17b40e0ed3dc9b920a79199bc87f50e20d188cacbc55141759df7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32680.json", "taxon_id": "83333", "uniprot_accession": "P32680", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf416-pf04222.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04222", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf416-pf04222.yaml" } ], "pfam_ids": [ "PF04222" ], "protein_name": "Uncharacterized protein HI_0431", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNPIHKRLENLESWQHLTFMAALCERMAPNFKLFCQMNELSAETKTYQNILNLVWEYLTVKDVKINFENQLEKLETIIPDVNDYDSFGVVPALDACQALAEILHAIIAGETLEKAVEISLISLGTIRVLLETETGRDWSESKLKENEDIQTELDVQWQVYRLLKECEKRDIELILALKNEIRTEGISNIGIEFHQ", "sequence_length": 196, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "adcc0569575a091e555c88bcfe36f0365b82c9c01eea9d5f71bd73d216e10c84", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44709.json", "taxon_id": "71421", "uniprot_accession": "P44709", "uniprot_release": "2026_03" } ], "pfam_id": "PF04222", "short_name": "DUF416", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf417-pf04224.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04224", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf417-pf04224.yaml" } ], "pfam_ids": [ "PF04224" ], "protein_name": "Uncharacterized protein HI_0219", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEIYMSVFNTFVEFVARIVAPMQRQFINFIRIAIFIVMAWIGGLKVCQYEADGIAHFVSNSPFFSYMYEKGPNLVPNDKGELVMEYTLHKNPEGKMVAKNIEWHKENGTYTASYIIGAIIVTVGILTLAGIWNATAGLAGGLLTFGMSIVTLSFLITTPEAWVPNLGGDLPTPAYGFPYLSGVGRLVIKDIIMMAGGLTAAAECANRILARKK", "sequence_length": 213, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "855e8d0199295ed5539e47048be716c8914086eeba5714a9df280e7efb611a81", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44577.json", "taxon_id": "71421", "uniprot_accession": "P44577", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mannheimia haemolytica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf417-pf04224.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04224", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf417-pf04224.yaml" } ], "pfam_ids": [ "PF04224" ], "protein_name": "Uncharacterized 23.0 kDa protein in purT/mpa1 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAFNNFVNFVANIVAPMQRQFINFVRIAICIVMVWIGGLKVCQYEADGIAHFVSNSPFFSYMYKKGPNLVDDGTGKMVMEYTLHKNPEGKMVAKNIEWHKENGTYTASYIIGATIVTVGLLTLSGIWFPVSGMAGGLLTFGMSIVTLSFMITTPEIWVPNLGGDMPTPAHGFPYLSAVGRLIVKDVIMMAGGLVAAAECANRILARRKAI", "sequence_length": 211, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5b7a1233ed60f864315b09f731b5ba38894d442416de96d4dbcb745d7e2c3ec2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P46928.json", "taxon_id": "75985", "uniprot_accession": "P46928", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/response-to-hypochlorite-go1901530.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1901530", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/response-to-hypochlorite-go1901530.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/reactive-chlorine-resistance-membrane-protein-rclc-nf040476.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF040476", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/reactive-chlorine-resistance-membrane-protein-rclc-nf040476.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf417-pf04224.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04224", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf417-pf04224.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P75685", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04224" ], "protein_name": "Inner membrane protein RclC", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "5787978a655a5987d1da084bfb0801fe126b880cecd8b063882b1c3adffc7e40", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEKYLHLLSRGDKIGLTLIRLSIAIVFMWIGLLKFVPYEADSITPFVANSPLMSFFYEHPEDYKQYLTHEGEYKPEARAWQTANNTYGFSNGLGVVEVIIALLVLANPVNRWLGLLGGLMAFTTPLVTLSFLITTPEAWVPALGDAHHGFPYLSGAGRLVLKDTLMLAGAVMIMADSAREILKQRSNESSSTLKTEY", "sequence_length": 197, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "5787978a655a5987d1da084bfb0801fe126b880cecd8b063882b1c3adffc7e40", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P75685.json", "taxon_id": "83333", "uniprot_accession": "P75685", "uniprot_release": "2026_03" } ], "pfam_id": "PF04224", "short_name": "DUF417", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/grpb-pf04229.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/grpb-pf04229.yaml" } ], "pfam_ids": [ "PF01121", "PF04229" ], "protein_name": "Dephospho-CoA kinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRIGLTGGIGAGKSLLSTTFSQCGGIVVDGDVLAREVVQPGTEGLASLVDAFGRDILLADGALDRQALAAKAFRDDESRGVLNGIVHPLVARRRSEIIAAVSGDAVVVEDIPLLVESGMAPLFPLVVVVHADVELRVRRLVEQRGMAEADARARIAAQASDQQRRAVADVWLDNSGSPEDLVRRARDVWNTRVQPFAHNLAQRQIARAPARLVPADPSWPDQARRIVNRLKIACGHKALRVDHIGSTAVSGFPDFLAKDVIDIQVTVESLDVADELAEPLLAAGYPRLEHITQDTEKTDARSTVGRYDHTDSAALWHKRVHASADPGRPTNVHLRVHGWPNQQFALLFVDWLAANPGAREDYLTVKCDADRRADGELARYVTAKEPWFLDAYQRAWEWADAVHWRP", "sequence_length": 407, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b561cf43c7252d88c1ebc571d8535afe265afd81ad0ebe9ced8fbf9b9ad88890", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P63827.json", "taxon_id": "233413", "uniprot_accession": "P63827", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/grpb-pf04229.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/grpb-pf04229.yaml" } ], "pfam_ids": [ "PF01121", "PF04229" ], "protein_name": "Dephospho-CoA kinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRIGLTGGIGAGKSLLSTTFSQCGGIVVDGDVLAREVVQPGTEGLASLVDAFGRDILLADGALDRQALAAKAFRDDESRGVLNGIVHPLVARRRSEIIAAVSGDAVVVEDIPLLVESGMAPLFPLVVVVHADVELRVRRLVEQRGMAEADARARIAAQASDQQRRAVADVWLDNSGSPEDLVRRARDVWNTRVQPFAHNLAQRQIARAPARLVPADPSWPDQARRIVNRLKIACGHKALRVDHIGSTAVSGFPDFLAKDVIDIQVTVESLDVADELAEPLLAAGYPRLEHITQDTEKTDARSTVGRYDHTDSAALWHKRVHASADPGRPTNVHLRVHGWPNQQFALLFVDWLAANPGAREDYLTVKCDADRRADGELARYVTAKEPWFLDAYQRAWEWADAVHWRP", "sequence_length": 407, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b561cf43c7252d88c1ebc571d8535afe265afd81ad0ebe9ced8fbf9b9ad88890", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WPA2.json", "taxon_id": "83331", "uniprot_accession": "P9WPA2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/bsu07140-like-domains-3-30-240-20.yaml" } ], "pfam_ids": [ "PF04239" ], "protein_name": "UPF0702 transmembrane protein YcaP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKAFDLHRMAFDKVPFDFLGEVALRSLYTFVLVFLFLKMTGRRGVRQMSLFEVLIILTLGSAAGDVAFYDDVPMVPVLIVFITLALLYRLVMWLMAHSEKLEDLLEGKPVVIIEDGELAWSKLNNSNMTEFEFFMELRLRGVEQLGQVRLAILETNGQISVYFFEDDKVKPGLLILPSDCTQRYKVVPESADYACIRCSEIIHMKAGEKQLCPRCANPEWTKASRAKRVT", "sequence_length": 230, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "42762b1ed954bf7f2e455d43c92310029e36ffc0476f2244b6f4f71a3b717623", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75839.json", "taxon_id": "83333", "uniprot_accession": "P75839", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf421-pf04239.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/upf0702-alpha-beta-domain-superfamily-ipr023090.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/upf0702-alpha-beta-domain-superfamily-ipr023090.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/bsu07140-like-domains-3-30-240-20.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.240.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/bsu07140-like-domains-3-30-240-20.yaml" } ], "pfam_ids": [ "PF04239" ], "protein_name": "UPF0702 transmembrane protein YdfR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNRLPFGYIKLRLAGRKANPMTNLIHHWSGGSMNFTWESLVLIVAGVILLRISGRKSIAQMTSTQTVVMISIGTIIVQPIIEYSLFKTLIAAAIFTSTLIVMEWIQMKSNTIEKMLTGKAKIVIENGQLHIENLKKMRLTADQLEMQLRLHGVTAIQDVKIATLEANGQLGIELTDDAKPLTVRDLKKLIHPDFINKDGQAQSGNQNIFDEVGKKNKKNVPKKLH", "sequence_length": 225, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "45ecd098ff5b0d97d27b7e0c9d7c052710dc5390e803c1e541ddf112f8c91c61", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P96696.json", "taxon_id": "224308", "uniprot_accession": "P96696", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/yetf-c-terminal-domain-ipr007353.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007353", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/yetf-c-terminal-domain-ipr007353.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/yetf-like-n-terminal-transmembrane-domain-ipr048454.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048454", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/yetf-like-n-terminal-transmembrane-domain-ipr048454.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/yetf-n-pf20730.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20730", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/yetf-n-pf20730.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/upf0702-alpha-beta-domain-superfamily-ipr023090.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/upf0702-alpha-beta-domain-superfamily-ipr023090.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/bsu07140-like-domains-3-30-240-20.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.240.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/bsu07140-like-domains-3-30-240-20.yaml" } ], "pfam_ids": [ "PF04239", "PF20730" ], "protein_name": "UPF0702 transmembrane protein YdfS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIELEVVIRTVASFGLLLIAERILGKQTISQMTIFDFIAAITLGAIAAGLAYNTSIKPHNMAISFSIFVLTIFLISFLSIKNRKLRKFFAGDPTVLIQNGKILESNMRKMRYTLDYLNQQLREKEIFNIEEVLFAILETNGQLTVLRKPQFRHVTKQDLMIAVNQEQRLPIELIMDGEIIENNLKQNRLTESWLLEELRKRDIKVKETVYAVLLGNGDIYVDQYKDHISVPMDKE", "sequence_length": 235, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "db7aa6154a9162550fbd66d0db33b310b10dba9693d42a4f8309bdddcbdb734b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P96697.json", "taxon_id": "224308", "uniprot_accession": "P96697", "uniprot_release": "2026_03" } ], "pfam_id": "PF04239", "short_name": "DUF421", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haloarcula japonica (strain ATCC 49778 / DSM 6131 / JCM 7785 / NBRC 101032 / NCIMB 13157 / TR-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/caroten-synth-pf04240.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04240", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/caroten-synth-pf04240.yaml" } ], "pfam_ids": [ "PF04240" ], "protein_name": "Bisanhydrobacterioruberin hydratase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSGKDRTLAGWTLPETKTDATAQFDRFVTENRFTIAVVFPLVGAVTLLASAEGLLPDPLAFNPYFVLFGTFVMRLPLVAGIFPLVDRRAGLALVALTLYSYGIELVGVRTGWPYGEFTYGVDLGPMLLGDVPFGLPVFFFPLVLNAYLLVLLLLGNRAASTTVRLLSTLATVMLVDLVLDPGAVAIGFWIYEMPQFYGVPWQNYAGWLLSGSVAVLLFDFGFDRAGLRRRLRDCPFMLDDLVSFVLLWGGINLFYTNWVPFGLAALLGAGLLWTDRFDFDLSETRLGRAVWR", "sequence_length": 293, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7aff4f5e796eadc2c60377977aeb35df276ec2bc5eb2dd45263939a4d95eb953", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0A1GNF2.json", "taxon_id": "1227453", "uniprot_accession": "A0A0A1GNF2", "uniprot_release": "2026_03" } ], "pfam_id": "PF04240", "short_name": "Caroten_synth", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008125.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008125", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008125.yaml" } ], "pfam_ids": [ "PF04241" ], "protein_name": "UPF0382 inner membrane protein YgdD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWALMLVGAIRLKRKGVSHE", "sequence_length": 131, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9604d7f71e8aebf34cba9acb63d05e19d4481ad522409595e6a198e68392fb4a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADR2.json", "taxon_id": "83333", "uniprot_accession": "P0ADR2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf423-pf04241.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04241", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf423-pf04241.yaml" } ], "pfam_ids": [ "PF04241" ], "protein_name": "Transmembrane protein 256", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNAASLVQRVAGISGALAVAAGAYGAHGFRRSEASDYQRELFDTANKYHFYHSLALLGAARCRKPALAGVILLTGMGCFCGPLYHQPLTNDPSFSKLAPIGGSLLIVGWAAMAL", "sequence_length": 114, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "020e896aef9bc84b61d8f3212076da624792e971c471d87ce40298a2e2a6fe0e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q568J8.json", "taxon_id": "7955", "uniprot_accession": "Q568J8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf423-pf04241.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04241", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf423-pf04241.yaml" } ], "pfam_ids": [ "PF04241" ], "protein_name": "Transmembrane protein 256", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGVGAAFRRLGALSGAGALGLASYGAHGAQFPDAYGKELFDKANKHHFLHSLALLGVPSCRKPVWAGLLLASGTTLFCTSFYYQALSGDTSIQTLGPVGGSLLILGWLALAF", "sequence_length": 113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "53bb8a27e057e01b8efd7b6ad99935ea4f85b820ddcb84a8aa4cf3ec0d34ab34", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5F285.json", "taxon_id": "10090", "uniprot_accession": "Q5F285", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf423-pf04241.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04241", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf423-pf04241.yaml" } ], "pfam_ids": [ "PF04241" ], "protein_name": "Transmembrane protein 256", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGPAAAFRRLGALSGAAALGFASYGAHGAQFPDAYGKELFDKANKHHFLHSLALLGVPHCRKPLWAGLLLASGTTLFCTSFYYQALSGDPSIQTLAPAGGTLLLLGWLALAL", "sequence_length": 113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b951c6285b641a245d41c91a348d692a6a6dad3763cdf3e1c974479ac7d3ca2d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N2U0.json", "taxon_id": "9606", "uniprot_accession": "Q8N2U0", "uniprot_release": "2026_03" } ], "pfam_id": "PF04241", "short_name": "DUF423", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf424-pf04242.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04242", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf424-pf04242.yaml" } ], "pfam_ids": [ "PF04242" ], "protein_name": "Uncharacterized 14.4 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDDALQNTCAENAFVFTTDDLLKNLPFSSSKCSPFKLHHYAQLKLLSNGVIDKRVAATDELRKFNFKIDLERRYISNVLDYEFVVLDHDLSTVHVVDAETRRKLGHLNVSLHQTDPEALVISATLAT", "sequence_length": 127, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9b488873808e9df16653336a30c6490d251007e59349e7aa144c6b2a76bb27d8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10297.json", "taxon_id": "262177", "uniprot_accession": "O10297", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf424-pf04242.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04242", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf424-pf04242.yaml" } ], "pfam_ids": [ "PF04242" ], "protein_name": "Uncharacterized 14.6 kDa protein in EGT-IAP1 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDDSVASMCVDNAFAYTTDDLLKNIPFSHSKCAPFKLQNYTVLKRLSNGFIDKYVDVCSISELQKFNFKIDRLTNYISNIFEYEFVVLEHDLSTVHVINAETKTKLGHINVSLNQNDANVLILTVTLTS", "sequence_length": 129, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6633cb47883b9fb01e8a7a6f25563af5ac29055fb2808155ea984a42250e0961", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41431.json", "taxon_id": "46015", "uniprot_accession": "P41431", "uniprot_release": "2026_03" } ], "pfam_id": "PF04242", "short_name": "DUF424", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Agrobacterium fabrum (strain C58 / ATCC 33970)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dprp-pf04244.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04244", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dprp-pf04244.yaml" } ], "pfam_ids": [ "PF04244" ], "protein_name": "(6-4) photolyase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQLVLILGDQLSPSIAALDGVDKKQDTIVLCEVMAEASYVGHHKKKIAFIFSAMRHFAEELRGEGYRVRYTRIDDADNAGSFTGEVKRAIDDLTPSRICVTEPGEWRVRSEMDGFAGAFGIQVDIRSDRRFLSSHGEFRNWAAGRKSLTMEYFYREMRRKTGLLMNGEQPVGGRWNFDAENRQPARPDLLRPKHPVFAPDKITKEVIDTVERLFPDNFGKLENFGFAVTRTDAERALSAFIDDFLCNFGATQDAMLQDDPNLNHSLLSFYINCGLLDALDVCKAAERAYHEGGAPLNAVEGFIRQIIGWREYMRGIYWLAGPDYVDSNFFENDRSLPVFYWTGKTHMNCMAKVITETIENAYAHHIQRLMITGNFALLAGIDPKAVHRWYLEVYADAYEWVELPNVIGMSQFADGGFLGTKPYAASGNYINRMSDYCDTCRYDPKERLGDNACPFNALYWDFLARNREKLKSNHRLAQPYATWARMSEDVRHDLRAKAAAFLRKLD", "sequence_length": 507, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "028b016a0513576a1e528e638487f8a184a1b1fb222002d3d637d3dfbc1fcf8c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A9CH39.json", "taxon_id": "176299", "uniprot_accession": "A9CH39", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dprp-pf04244.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04244", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dprp-pf04244.yaml" } ], "pfam_ids": [ "PF04244" ], "protein_name": "Uncharacterized protein R852", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNIAVIFPNQLFEISYLPYDPDSIDVYIIVEDSLYFSDNERFLRFNLLKLIYLRAAMKYYYDYLTDRGYDVIYLDWTGEPSLVFEYVSKNYGSCNLNIIDPVDYLLEERIAEFSDSYNQKIIYYESPGFILTNLDLKQYTGSKQGANKKFFQHSFYAWFRKKFDILMDGNKPIGGKYSYDKYNRQTIPNKIFISF", "sequence_length": 196, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9fd66b5e1f4aa004fb7a1bdded598e31a7a359c8f816a586fb4e90b3cf8359c9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UP29.json", "taxon_id": "212035", "uniprot_accession": "Q5UP29", "uniprot_release": "2026_03" } ], "pfam_id": "PF04244", "short_name": "DPRP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04248", "short_name": "NTP_transf_9", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04250", "short_name": "DUF429", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/sam-dependent-arginine-methyltransferase-related-to-yeast-sfm1-arginin-cd18090.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd18090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/sam-dependent-arginine-methyltransferase-related-to-yeast-sfm1-arginin-cd18090.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sfm1-like-pf04252.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sfm1-like-pf04252.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q12314", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04252" ], "protein_name": "Protein arginine N-methyltransferase SFM1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "594eb49eed5ac67fe83c7ea8e07cf590f893f3c9014ed1b32a4bac5747cc7208", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKYIIEHMEEGFSEWVILEYSQILREVGAENLILSSLPESTTEKDIPQRLLKLGLRWTTKDLKGINEDFKDLELLKDGRVCLLDPRATIDLQPEDATKFDYFVFGGILGDHPPRDRTKELKTAYPNLLISRRLGDKQMTTDTAIRTTQLIIKDRIAFEDIKFIDYPEFRFNKNEATEMPFRYVLDKEGKPILPEGMLDLIKKDSAQSLDDLLM", "sequence_length": 213, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "594eb49eed5ac67fe83c7ea8e07cf590f893f3c9014ed1b32a4bac5747cc7208", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12314.json", "taxon_id": "559292", "uniprot_accession": "Q12314", "uniprot_release": "2026_03" } ], "pfam_id": "PF04252", "short_name": "SFM1-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04254", "short_name": "DUF432", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf433-pf04255.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04255", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf433-pf04255.yaml" } ], "pfam_ids": [ "PF04255" ], "protein_name": "Uncharacterized protein AF_0609", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERMVVDSKVMVGKPVIKGTRIPVDANVRIRNLQFY", "sequence_length": 36, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a8081e5f523210126de4e0be30565bf13e15568240785c97c98edc82ad1fd723", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O29646.json", "taxon_id": "224325", "uniprot_accession": "O29646", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf433-pf04255.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04255", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf433-pf04255.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-66-pf21321.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21321", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-66-pf21321.yaml" } ], "pfam_ids": [ "PF04255", "PF21321" ], "protein_name": "Putative antitoxin VapB45", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGDQELELRFDVPLYTLAEASRYLVVPRATLATWADGYERRPANAPAVQGQPIITALPHPTGSHARLPFVGIAEAYVLNAFRRAGVPMQRIRPSLDWLIKNVGPHALASQDLCTDGAEVLWRFAERSGEGSPDDLVVRGLIVPRSGQYVFKEIVEHYLQQISFADDNLASMIRLPQYGDANVVLDPRRGYGQPVFDGSGVRVADVLGPLRAGATFQAVADDYGVTPDQLRDALDAIAA", "sequence_length": 239, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e6748b511236af0a583fcaf9df37f9e3e4c9d68b4eb08afcf0ad6839cd7da58d", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O53464.json", "taxon_id": "83332", "uniprot_accession": "O53464", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sinorhizobium fredii (strain NBRC 101917 / NGR234)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf433-pf04255.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04255", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf433-pf04255.yaml" } ], "pfam_ids": [ "PF04255" ], "protein_name": "Uncharacterized protein y4eO", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAHMPAVAEMLKASEAAVVSRVSLRDVNRVIDEHILPEAFVSLDNGRHVLAGACSLIAFYFESARRLTSEERLFAIRIAEGRLARARTLPWSALLREDWTVHHEFLTIDLMPFMRGASERLDDLAAAREIVTSSPDILGGTPVVRGTRVPVYDVAASVAAGHSVERMLEAWPSLDAEKIRLASIYAEANPLRGRRRVFGDLPEGSVIVSDRRVARRRKTG", "sequence_length": 221, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ce364e4047209ca547eea6173cb0a0a9b9c292d7cbf259601a034fd8261731e7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P55438.json", "taxon_id": "394", "uniprot_accession": "P55438", "uniprot_release": "2026_03" } ], "pfam_id": "PF04255", "short_name": "DUF433", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf434-ipr007368.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007368", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf434-ipr007368.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5616-ipr041652.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041652", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5616-ipr041652.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5616-pf18481.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18481", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5616-pf18481.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf434-pf04256.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04256", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf434-pf04256.yaml" } ], "pfam_ids": [ "PF04256", "PF18481" ], "protein_name": "Uncharacterized protein MJ0935", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSIEKAKEDFKYLINRGYKKDVALNFVANHYKLSKEDRLKIIRTTHSDKEIKLTKRKLKKLKDFKGKTIYIDGFNVLISLEALIKGNKIVLCDDNIYRDFENVYGKYKINEYSDKAISLLLEILKHYNIKAVIYLDAQVSKSGILAKKIREKMKAFSIEGEVFCVKNCDYELKNKEVVATSDSVIIKSENVKYVVDLIAEAIEYLKKK", "sequence_length": 208, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "879318d2459547bf6ef64cb08ca34cd7ea42a2c62054f2bc45f0a064a95130dd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58345.json", "taxon_id": "243232", "uniprot_accession": "Q58345", "uniprot_release": "2026_03" } ], "pfam_id": "PF04256", "short_name": "DUF434", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 20, "discovery_scanned": true, "example_count": 20, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pa-domain-ipr003137.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003137", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pa-domain-ipr003137.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pa-pf02225.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pa-pf02225.yaml" } ], "pfam_ids": [ "PF02225", "PF04258" ], "protein_name": "Signal peptide peptidase-like 2C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MACLGSLHPLGSLLLLFLLLLLSPEARGEYGLVRVVSKNWSKDYCVLYSSDYVNLPRDLHHAPLLSLHDGTKTPWCPDEDSFHQAQDSSPRQRPLHQTTTMVTRGNCSFYAKGWLAQDQGAQGLLIVSRARNQQCSDTISKPQDPSKPWPALTIPVAVLRYTDMLDIVSHTYGDTDVRVAMFAPLEPVTDYNMAIIFILAVGTVAAGGYWAGLMEANKLQRRQAQRGGGLGGHNQQQTVAAERSQRAWEDDDFEDAPMDFTPAMTGAVVTMSCSIMILLYFFYDCFVYVMIGIFSLGASTGLYSCLAPILCHLPLWRYQWVLPGQRVSVTWPLLLLAGLCAMVTVLWVIHRNEDHWAWLLQDTLGVAYCLFVLRRVRLPTFKNCTLFLLALLAFDVFFVFITPLFTKTGESIMVEVASGPADSSSHERLPMVLKVPRLSFSALTLCNQPFSILGFGDIVVPGFLVAYCHRFDMQVQSRQVYYMACTVAYAVGLLVTFVAMILMQMGQPALLYLVSSTLLTSLAVATCRQEFTLFWTGQGRAKIPAEPVAQPCIASAVGSKMKLEDAKDSRTTNRFEQAVDGESGDLESSTGDDMAEMVTLSEDEATSPEGHSESSEGWSDTNLDPNELPSGSPMALEAMLIPLIQPIPHPSELGHIRTQSRVHDSSLPWMGLHKRKGLKVKKSMSAQAPL", "sequence_length": 690, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8c327818a35ea2bad18a1b0b49138b7e3c6dd1e1387bdff37b180692bd9dec7c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2A6C4.json", "taxon_id": "10090", "uniprot_accession": "A2A6C4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/peptidase-a22b-pf04258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/peptidase-a22b-pf04258.yaml" } ], "pfam_ids": [ "PF04258" ], "protein_name": "Signal peptide peptidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNCERFANLALAGLTLAPLVVRVNPNLNVILTACITVYVGCFRSVKDTPPTETMSKEHAMRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFVLGIVALSATLLPAIRRFLPNPWNDNLIVWRFPYFKSLEVEFTKSQVVAGIPGTFFCAWYAWKKHWLANNILGLSFCIQGIEMLSLGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDALRPYSMLGLGDIVIPGIFVALALRFDVSRRRQPQYFTSAFIGYAVGVILTIVVMNWFQAAQPALLYIVPAVIGFLASHCIWNGDIKPLLAFDESKTEEATTDESKTSEEVNKAHDE", "sequence_length": 344, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bfe8027ab877f4dbe155316a873e70bfb78a8db61e05888fbe54931dbbb2ca06", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O81062.json", "taxon_id": "3702", "uniprot_accession": "O81062", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/perinuclear-endoplasmic-reticulum-membrane-go1990578.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990578", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/perinuclear-endoplasmic-reticulum-membrane-go1990578.yaml" } ], "pfam_ids": [ "PF04258" ], "protein_name": "Intramembrane protease YPF1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKYLNSFVDHLSEWSSRAFRNNSSSANQSASNKELEQVFEQINAIVENHNNKLTTAFDKISYRVAHKITHLVESHSLVFNYATLVLIASALVVIGSFTSISSIPFTALPPTREHSLFDPTDFDVDHDCHVIYRENDEDKKKKKKSKRFFDMMDEKHAIILPLTSGCTLLALYFVIKKLHLNWLKYVVKILNFNITLLNIPAGTFVYSYFLNSLFRNLSHLASWNPLVVLPRYRVTIADDNEDLNKIGGFVTNLNYKDGLTNSVVHKKTLDEIEKDHWMKHFYRRELVEPKDIKSKRQISNMYLNSALIVSFVLSIVSTVYFYLSPNDWLISNAVSMNMAIWSIAQLKLKNLKSGALILIALFFYDICFVFGTDVMVTVATNLDIPVKLSLPVKFNTAQNNFNFSILGLGDIALPGMFIAMCYKYDIWKWHLDHDDTEFHFLNWSYVGKYFITAMVSYVASLVSAMVSLSIFNTAQPALLYIVPSLLISTILVACWNKDFKQFWNFQYDTIEVDKSLKKAIEKKENSITYSTFILSEYYNDADKYALLGDDVNENFDDDEEFVQEEDLSDSSEEELSEEDLLDDESS", "sequence_length": 587, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ac825bb696e7dfd741ce0a1246bba5bfb0cb4fc5ff28a8c73c5c401c888e08a3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P34248.json", "taxon_id": "559292", "uniprot_accession": "P34248", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-nematode-larval-development-go0061062.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/peptidase-a22b-pf04258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/peptidase-a22b-pf04258.yaml" } ], "pfam_ids": [ "PF04258" ], "protein_name": "Intramembrane protease 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEAATEIPPTASNVTVFTFEEQATSSLALYGMSILCIIIGSIRSAQYIRTNIDKKRLIEGSITMREARKFPISASLVLFGLYLFFKPAAERFLWVARVFQILRVPEEYVQKINSTIISYTANTTTTGPSEPFLLRLASRIPQERVPEAIQNAATYAYTNLPTIQKAECMQLLTFLICFEGVNAFASLLKPFVTAFLKKMPLVPSFLRFNAPYLFSLKKGNKEMEEGDIEDAKKKETEYLFKIDFDRYDIIALLMCSPILISHLLKRHWITNNIIGVSFSILGIERLHLASFKAGSLLLVGLFFYDIFWVFGTDVMTSVAKGIDAPILLQFPQDIYRNGIMEASKHSMLGLGDIVIPGIFIALLRRFDYRVVQTTAESKAPQGSLKGRYYFVVTVVAYMAGLFITMAVMHHFKAAQPALLYLVPCCLFVPLLLAVIRGELSALWNYDESRHVDNEENRKKVDSGKKNN", "sequence_length": 468, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ce876fc895afd8262e696531f8dea39eac5244896de0d4e0e34ccf3277951eb9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P49049.json", "taxon_id": "6239", "uniprot_accession": "P49049", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pa-domain-ipr003137.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003137", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pa-domain-ipr003137.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pa-pf02225.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pa-pf02225.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/pa-domain-superfamily-ipr046450.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046450", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/pa-domain-superfamily-ipr046450.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q0WMJ8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02225", "PF04258" ], "protein_name": "Signal peptide peptidase-like 4", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "313f45f41cb9eafbd9dda7ce6893309a69f00e382e04b5427eaf4a31630211fe", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MILWKSLSCFSFVFGLLLYSASFVCAGDIVHHDDSLPQRPGCNNNFVLVKVPTRVNGSEYTEYVGVGARFGPTLESKEKHATLIKLAIADPPDCCSTPKNKLTGEVILVHRGKCSFTTKTKVAEAAGASAILIINNSTDLFKMVCEKGENVLDITIPVVMLPVDAGRSLENIVKSNAIVTLQLYSPKRPAVDVAEVFLWLMAVGTILCASYWSAWTVREEAIEQDKLLKDGSDELLQLSTTSSRGVVEVTVISAILFVVVASCFLIMLYKLMSFWFIEVLVVLFCIGGVEGLQTCLVSLLSCFRWFRRFGESYVKVPFLGAVSYLTLAICPFCIAFAVFWAVKRQYSYAWIGQDILGISLIITVLQIVRVPNLKVGFVLLSCAFMYDIFWVFVSKWWFRESVMIVVARGDRSGEDGIPMLLKIPRMFDPWGGYSIIGFGDIILPGLLVTFALRYDWLANKRLKSGYFLGTMSAYGLGLLITYIALNLMDGHGQPALLYIVPFILGTLFVLGHKRGDLKTLWTTGEPDRPCPHVRLQPQSS", "sequence_length": 540, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "313f45f41cb9eafbd9dda7ce6893309a69f00e382e04b5427eaf4a31630211fe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0WMJ8.json", "taxon_id": "3702", "uniprot_accession": "Q0WMJ8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/pa-hsppl-like-protease-associated-domain-containing-human-signal-pepti-cd02129.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd02129", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/pa-hsppl-like-protease-associated-domain-containing-human-signal-pepti-cd02129.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pa-domain-ipr003137.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003137", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pa-domain-ipr003137.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pa-pf02225.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pa-pf02225.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/pa-domain-superfamily-ipr046450.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046450", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/pa-domain-superfamily-ipr046450.yaml" } ], "pfam_ids": [ "PF02225", "PF04258" ], "protein_name": "Signal peptide peptidase-like 2B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAARLAAALLLLAAQVACEFGVLRVVSQTSRTRSRDYCILYNPQWAHLPHDLSKVSLLKLRDLSTTQLCSYLDVPAEDFTNQIALVARGNCTFYEKVRLAQGSGAHGLLIVSKEKLVPPGGNKTQYEEISIPVALLSHRDLQDIFRRFGREVMVALYAPSEPVMDYNMVIIFVMAVGTVAIGGYWAGSHDVKKYMKHKRDDGPEKQEDEAVDVTPVMICVFVVMCCFMLVLLYYFYDRLVYVIIGIFCLASSTGLYSCLAPFVRKLPFCTCRVPDNNLPYFHKRPQARMLLLALFCVTVSVVWGIFRNEDQWAWVLQDTLGIAFCLYMLKTIRLPTFKACTLLLLVLFIYDIFFVFITPFLTKSGNSIMVEVATGPSNSSTHEKLPMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRIYFVACTIAYGLGLLVTFVALVLMQRGQPALLYLVPCTLLTSCTVALWRRELGAFWTGSGFAKDAPQTPWAATQGPVPPKAVGSSLSEQPPSEELAKSPLSTEEAGAADPAKDPDNPVASPLSPSNGDEAQPIPVVKPETSA", "sequence_length": 578, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b917bab2bf2c52c7bc9d4156e69c2c10063feed91d65118fb5a86f1e7b883cdc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3TD49.json", "taxon_id": "10090", "uniprot_accession": "Q3TD49", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/pa-go-like-protease-associated-domain-containing-proteins-like-arabido-cd02132.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd02132", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/pa-go-like-protease-associated-domain-containing-proteins-like-arabido-cd02132.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pa-domain-ipr003137.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003137", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pa-domain-ipr003137.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pa-pf02225.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pa-pf02225.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/pa-domain-superfamily-ipr046450.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046450", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/pa-domain-superfamily-ipr046450.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q4V3B8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02225", "PF04258" ], "protein_name": "Signal peptide peptidase-like 3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "22b6b40628bccfcd1c43263a47c1984e63e1b30f4d9a32126884ffe26cb51d87", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSSFDPPNHRYSALVLILLLLGFSVAAADDVSWTEDSSLESPGCTNKFQMVKVLNWVDGVEGDFLTGLTAQFGAALPSVPDQALRFPAAFVDPLDSCSHLSSRLDGHIALSIRGNCAFTEKAKHAEAAGASALLVINDKEDLDEMGCMEKDTSLNVSIPVLMISKSSGDALNKSMVDNKNVELLLYAPKRPAVDLTAGLLLLMAVGTVVVASLWSELTDPDQANESYSILAKDVSSAGTRKDDPEKEILDISVTGAVFFIVTASIFLLLLFYFMSSWFVWVLTIFFCIGGMQGMHNIIMAVILRKCRHLARKSVKLPLLGTMSVLSLLVNIVCLAFAVFWFIKRHTSYSWVGQDILGICLMITALQVVRLPNIKVATVLLCCAFVYDIFWVFISPLIFHESVMIVVAQGDSSTGESIPMLLRIPRFFDPWGGYDMIGFGDILFPGLLISFASRYDKIKKRVISNGYFLWLTIGYGIGLLLTYLGLYLMDGHGQPALLYIVPCTLGLAVILGLVRGELKELWNYGIEESESHTPEDPMPVA", "sequence_length": 540, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "22b6b40628bccfcd1c43263a47c1984e63e1b30f4d9a32126884ffe26cb51d87", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4V3B8.json", "taxon_id": "3702", "uniprot_accession": "Q4V3B8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/signal-peptidase-activity-go0009003.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009003", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/signal-peptidase-activity-go0009003.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/peptidase-a22b-pf04258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/peptidase-a22b-pf04258.yaml" } ], "pfam_ids": [ "PF04258" ], "protein_name": "Signal peptide peptidase-like", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSHGGAGGGLGAQTVGAGQLGGGAAAAGGGEYRELHWTVSSVMDSSRVSTCLISMLLIVYGSFRSLNIEQEAREREQKKRNESMTNLLTGEPVEKEPNLYFTADKFATLDTMHALCLPLGASISLLIMFFFFDSMQLLFAVCTAIIATVALAFLLLPMCQYIIRPCTDGKRFSFGFCGRFTAAELFSFTLSVSIVCIWVLTGHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFLSSYIFSTNVMVKVATRPADNPVGIVARKLHLGGIVRDTPKLNLPGKLVFPSLHNTGHFSMLGLGDVVMPGLLLCFVLRYDAYKKAQGVTSDPTLSPPRGVGSRLTYFHCSLLGYFLGLLTATVSSEVFKAAQPALLYLVPFTLLPLLLMAYLKGDLRRMWSEPFIAQQPSKQLEV", "sequence_length": 422, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0cc9361576db992eecd7d3e9e08bb5bb3b18401c108b225faeee4c78e438c4c2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q86P97.json", "taxon_id": "7227", "uniprot_accession": "Q86P97", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/sperm-egg-recognition-go0035036.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0035036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/sperm-egg-recognition-go0035036.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/pa-hsppl-like-protease-associated-domain-containing-human-signal-pepti-cd02129.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd02129", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/pa-hsppl-like-protease-associated-domain-containing-human-signal-pepti-cd02129.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pa-domain-ipr003137.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003137", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pa-domain-ipr003137.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pa-pf02225.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pa-pf02225.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8IUH8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02225", "PF04258" ], "protein_name": "Signal peptide peptidase-like 2C", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "df8a305c6944f40b48df9132b790ec1277f7a2081dbf32f82ad87c8b134c878a", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MACLGFLLPVGFLLLISTVAGGKYGVAHVVSENWSKDYCILFSSDYITLPRDLHHAPLLPLYDGTKAPWCPGEDSPHQAQLRSPSQRPLRQTTAMVMRGNCSFHTKGWLAQGQGAHGLLIVSRVSDQQCSDTTLAPQDPRQPLADLTIPVAMLHYADMLDILSHTRGEAVVRVAMYAPPEPIIDYNMLVIFILAVGTVAAGGYWAGLTEANRLQRRRARRGGGSGGHHQLQEAAAAEGAQKEDNEDIPVDFTPAMTGVVVTLSCSLMLLLYFFYDHFVYVTIGIFGLGAGIGLYSCLSPLVCRLSLRQYQRPPHSLWASLPLPLLLLASLCATVIIFWVAYRNEDRWAWLLQDTLGISYCLFVLHRVRLPTLKNCSSFLLALLAFDVFFVFVTPFFTKTGESIMAQVALGPAESSSHERLPMVLKVPRLRVSALTLCSQPFSILGFGDIVVPGFLVAYCCRFDVQVCSRQIYFVACTVAYAVGLLVTFMAMVLMQMGQPALLYLVSSTLLTSLAVAACRQELSLFWTGQGRAKMCGLGCAPSAGSRQKQEGAADAHTASTLERGTSRGAGDLDSNPGEDTTEIVTISENEATNPEDRSDSSEGWSDAHLDPNELPFIPPGASEELMPLMPMAMLIPLMPLMPPPSELGHVHAQAQAHETGLPWAGLHKRKGLKVRKSMSTQAPL", "sequence_length": 684, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "df8a305c6944f40b48df9132b790ec1277f7a2081dbf32f82ad87c8b134c878a", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IUH8.json", "taxon_id": "9606", "uniprot_accession": "Q8IUH8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/peptidase-a22b-pf04258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/peptidase-a22b-pf04258.yaml" } ], "pfam_ids": [ "PF04258" ], "protein_name": "Signal peptide peptidase-like 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEQTYSWAYSLVDSSQVSTFLISILLIVYGSFRSLNMDFENQDKEKDSNSSSGSFNGNSTNNSIQTIDSTQALFLPIGASVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQYLTRPCSPQNKISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLSLPGKLVFPSSTGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQASGDSCGAPGPANISGRMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFHSKSSSSRFLEV", "sequence_length": 384, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b6e6bfa915a530a1d8ce532ba96efea2b2697974b57e76114de04c1d8f61622", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TCT6.json", "taxon_id": "9606", "uniprot_accession": "Q8TCT6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/pa-hsppl-like-protease-associated-domain-containing-human-signal-pepti-cd02129.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd02129", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/pa-hsppl-like-protease-associated-domain-containing-human-signal-pepti-cd02129.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/pa-domain-superfamily-ipr046450.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046450", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/pa-domain-superfamily-ipr046450.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8TCT7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02225", "PF04258" ], "protein_name": "Signal peptide peptidase-like 2B", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "40750bce57b72ecb5330db1601f9a1f3abedd86b5267ef623ebb1e89d0d1361c", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAAAVAAALARLLAAFLLLAAQVACEYGMVHVVSQAGGPEGKDYCILYNPQWAHLPHDLSKASFLQLRNWTASLLCSAADLPARGFSNQIPLVARGNCTFYEKVRLAQGSGARGLLIVSRERLVPPGGNKTQYDEIGIPVALLSYKDMLDIFTRFGRTVRAALYAPKEPVLDYNMVIIFIMAVGTVAIGGYWAGSRDVKKRYMKHKRDDGPEKQEDEAVDVTPVMTCVFVVMCCSMLVLLYYFYDLLVYVVIGIFCLASATGLYSCLAPCVRRLPFGKCRIPNNSLPYFHKRPQARMLLLALFCVAVSVVWGVFRNEDQWAWVLQDALGIAFCLYMLKTIRLPTFKACTLLLLVLFLYDIFFVFITPFLTKSGSSIMVEVATGPSDSATREKLPMVLKVPRLNSSPLALCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRVYFVACTIAYGVGLLVTFVALALMQRGQPALLYLVPCTLVTSCAVALWRRELGVFWTGSGFAKVLPPSPWAPAPADGPQPPKDSATPLSPQPPSEEPATSPWPAEQSPKSRTSEEMGAGAPMREPGSPAESEGRDQAQPSPVTQPGASA", "sequence_length": 592, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "40750bce57b72ecb5330db1601f9a1f3abedd86b5267ef623ebb1e89d0d1361c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TCT7.json", "taxon_id": "9606", "uniprot_accession": "Q8TCT7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", 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"url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pa-domain-ipr003137.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pa-pf02225.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pa-pf02225.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/pa-domain-superfamily-ipr046450.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046450", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/pa-domain-superfamily-ipr046450.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8TCT8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02225", "PF04258" ], "protein_name": "Signal peptide peptidase-like 2A", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "46b8bcb88aa708d60ee5374ec338db6be09fae162705ff4356e00761749634a4", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/peptidase-a22b-pf04258.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8TCT9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04258" ], "protein_name": "Signal peptide peptidase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "df20140c72955d34cd19a7536abc534297f6f8a04c3776d9618dcc6e777b99ee", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESNPKDPAAVTESKEGTEASASKGLEKKEK", "sequence_length": 377, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "df20140c72955d34cd19a7536abc534297f6f8a04c3776d9618dcc6e777b99ee", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TCT9.json", "taxon_id": "9606", "uniprot_accession": "Q8TCT9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/pa-go-like-protease-associated-domain-containing-proteins-like-arabido-cd02132.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd02132", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/pa-go-like-protease-associated-domain-containing-proteins-like-arabido-cd02132.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"MDSLRFLRILLLSSSILLLSLRSTVTAGDIVHQDNLAPKKPGCENDFVLVKVQTWIDGVENEEFVGVGARFGKRIVSKEKNANQTHLVFANPRDSCTPLKNKLSGDVVIVERGNCRFTAKANNAEAAGASALLIINNQKELYKMVCEPDETDLDIQIPAVMLPQDAGASLQKMLANSSKVSAQLYSPRRPAVDVAEVFLWLMAIGTILCASYWSAWSAREAAIEHDKLLKDAIDEIPNTNDGGSGVVEINSISAIFFVVLASGFLVILYKLMSYWFVELLVVVFCIGGVEGLQTCLVALLSRWFQRAADTYVKVPFLGPISYLTLAVSPFCIVFAVLWAVYRVHSFAWIGQDVLGIALIITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLLIAFALRYDWLANKTLRTGYFIWAMVAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTMLTLARKRDDLWILWTKGEPERACPHHVRLEQCSEK", "sequence_length": 540, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f341d1a7c181eea81c3a9622f1f489049db4038881d0980b0f5f437a571f6b2c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8W469.json", "taxon_id": "3702", "uniprot_accession": "Q8W469", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/3-4-23-ec3-4-23--.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:3.4.23.-", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/enzymatic_activity/ec/3-4-23-ec3-4-23--.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/cytoplasmic-side-of-endoplasmic-reticulum-membrane-go0098554.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0098554", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/cytoplasmic-side-of-endoplasmic-reticulum-membrane-go0098554.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/golgi-associated-vesicle-membrane-go0030660.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030660", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/golgi-associated-vesicle-membrane-go0030660.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/membrane-protein-proteolysis-go0033619.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0033619", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/membrane-protein-proteolysis-go0033619.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/peptidase-a22b-pf04258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/peptidase-a22b-pf04258.yaml" } ], "pfam_ids": [ "PF04258" ], "protein_name": "Signal peptide peptidase-like 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METLWTLLYLLEPAPATLIVTAVTVTFASAFRALNYGKEMERNRDFSEASITLDSSQALMIPVMSSCSLLLMFYLFSSVSQLLTAFTAIASVSSLFYWLSPYAVYMKTQLGLSDPFLSRCCSKSFTRIQGLLLVACAMTVVAWLISGHWVLNNLLGISICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVAVATQQASNPVHTVANSLNLPGLQLITKKLELPVKIVFPRNLLGGVVPGVSASDFMMLGLGDMAIPAMLLALVLCFDHRKTRDVVNIFDLKSSKGHKYIWYALPGYAIGLVAALAAGVLTHSPQPALLYLVPSTLGPVIFMSWRRKDLAELWEGPALSNPIEKSHEIEI", "sequence_length": 372, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fce49bca5bf55789d05e0aa99b882b0602c02a0bc070cdb142769228b526feba", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q93Z32.json", "taxon_id": "3702", "uniprot_accession": "Q93Z32", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/peptidase-a22b-pf04258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/peptidase-a22b-pf04258.yaml" } ], "pfam_ids": [ "PF04258" ], "protein_name": "Signal peptide peptidase-like 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEQTYSWAYSLVDSSQVSTFLISILLIVYGSFRSLNMDFENQDKEKDSNSSSGSFNGNSTNNSIQTIDSTQALFLPIGASVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQYLTRPCSPQNKISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLSLPGKLVFPSSTGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQASGDSCGAPGPANISGRMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFHSKSSSSRFLEV", "sequence_length": 384, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b6e6bfa915a530a1d8ce532ba96efea2b2697974b57e76114de04c1d8f61622", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CUS9.json", "taxon_id": "10090", "uniprot_accession": "Q9CUS9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/peptidase-a22b-pf04258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/peptidase-a22b-pf04258.yaml" } ], "pfam_ids": [ "PF04258" ], "protein_name": "Signal peptide peptidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSAVSDPHNGSAEAGTPANGTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARGKSSSDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSVVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEKGLEADNFAMLGLGDIVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVAEMFSYEESNPKDPAAETESKEESTEASASKRLEKKEK", "sequence_length": 378, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a593a4c5356211cf5804c9b1e2eb10f5287ce578ddb04ebda0668f5e6887f374", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D8V0.json", "taxon_id": "10090", "uniprot_accession": "Q9D8V0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pa-domain-ipr003137.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003137", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pa-domain-ipr003137.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pa-pf02225.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pa-pf02225.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/pa-domain-superfamily-ipr046450.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046450", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/pa-domain-superfamily-ipr046450.yaml" } ], "pfam_ids": [ "PF02225", "PF04258" ], "protein_name": "Signal peptide peptidase-like 2A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGLLHSLHAPAAALLWSCLLGLAAAQEAILHASTNGVSSLSKDYCMYYNNNWTRLPSSLENATSLSLMNLTGTALCHLSDIPPDGIRNKAVVVHWGPCHFLEKARIAQEGGAAALLIANNSVLIPSSRNKSTFQNVTVLIAVITQKDFKDMKETLGDDITVKMYSPSWPNFDYTLVVIFVIAVFTVALGGYWSGLIELENMKSVEDAEDRETRKKKDDYLTFSPLTVVVFVVICCIMIVLLYFFYRWLVYVMIAIFCIASSMSLYNCLSALIHRMPCGQCTILCCGKNIKVSLIFLSGLCISVAVVWAVFRNEDRWAWILQDILGIAFCLNLIKTMKLPNFMSCVILLGLLLIYDVFFVFITPFITKNGESIMVELAAGPFENAEKLPVVIRVPKLMGYSVMSVCSVPVSVLGFGDIIVPGLLIAYCRRFDVQTGSSIYYISSTIAYAVGMIITFVVLMVMKTGQPALLYLVPCTLITVSVVAWSRKEMKKFWKGSSYQVMDHLDYSTNEENPVTTDEQIVQQ", "sequence_length": 523, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "988563bd7d04b9491555c4b18f2cfb0d478c223f130885bcddab93f0bc94d766", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JJF9.json", "taxon_id": "10090", "uniprot_accession": "Q9JJF9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pa-domain-ipr003137.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003137", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pa-domain-ipr003137.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pa-pf02225.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pa-pf02225.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/pa-domain-superfamily-ipr046450.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046450", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/pa-domain-superfamily-ipr046450.yaml" } ], "pfam_ids": [ "PF02225", "PF04258" ], "protein_name": "Signal peptide peptidase-like 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf440-pf04269.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04269", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf440-pf04269.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/putative-dsdna-mimic-superfamily-ipr036763.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036763", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/putative-dsdna-mimic-superfamily-ipr036763.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/dsdna-mimic-putative-3-10-450-140.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.450.140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/dsdna-mimic-putative-3-10-450-140.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0A8L7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04269" ], "protein_name": "Putative double-stranded DNA mimic protein YciU", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ddd526a9dc6b5d9d6a79572f33edc2afcc75ded656a283536fcac1eff3983f20", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHVDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWRE", "sequence_length": 109, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ddd526a9dc6b5d9d6a79572f33edc2afcc75ded656a283536fcac1eff3983f20", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A8L7.json", "taxon_id": "83333", "uniprot_accession": "P0A8L7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf440-pf04269.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04269", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf440-pf04269.yaml" } ], "pfam_ids": [ "PF04269" ], "protein_name": "Putative double-stranded DNA mimic protein HI_1450", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTEIKKLDPDTAIDIAYDIFLEMAGENLDPADILLFNLQFEERGGVEFVETADDWEEEIGVLIDPEEYAEVWVGLVNEQDEMDDVFAKFLISHREEDREFHVIWKK", "sequence_length": 107, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "efeadeb5da5f34fcfc6d0626a1a698c35021769893fd03c2f8946b51d95227ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44199.json", "taxon_id": "71421", "uniprot_accession": "P44199", "uniprot_release": "2026_03" } ], "pfam_id": "PF04269", "short_name": "DUF440", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Xylella fastidiosa (strain Temecula1 / ATCC 700964)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/blh-phosphatase-pf04273.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04273", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/blh-phosphatase-pf04273.yaml" } ], "pfam_ids": [ "PF00753", "PF04273" ], "protein_name": "Beta-lactamase hydrolase-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIVDINERLAISGQPNTDEFINFARRGYRSIINLRPDGEEPNQPGNDAEQAAARRAGLAYNFVPVIGTSITEADIQAFQRAIATTEGSVLVHCKSGTRALMLYALSEVIDGRMKRDEVEALGHAHGFDLGRAVTWLKRQAIQTPRVSGFFDPRTGSIQYVVTDQTTKRCAIIDPVLDFDEKSGATATTNADAILAHVEQQGLTVEWILDTHPHADHFSAAQYLKQRTGAPTAIGTHVTKVQRLWREIYNLPTLSTNGSQWDHLFADGDVFNVGSIKGRVMFSPGHTLASVTYVIGDTAFVHDTIFMPDSGTARADFPGGSARALWSSIQAILSLPDETRLFTGHDYQPSGRHPRWESTVGEQKKANLHLAGVDETTFVALREARDKTLPMPKLILHALQVNVLGGQLPEPEANGRRYLKFPLNALEGAAW", "sequence_length": 431, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3010d83558aad699fd6850fc8a619229ecbda34983d9323f4e252a35a503d7a6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q87AD6.json", "taxon_id": "183190", "uniprot_accession": "Q87AD6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Agrobacterium fabrum (strain C58 / ATCC 33970)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/blh-phosphatase-pf04273.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04273", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/blh-phosphatase-pf04273.yaml" } ], "pfam_ids": [ "PF00753", "PF04273" ], "protein_name": "Beta-lactamase hydrolase-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKAVRINERLTIAGQPMIADFPSLSAQGFKSIINARPDGEEPGQPGNTQEKSAAGAAGMDYGFIPVSGPTITEADIRAFQQKMAEAEGPVFAHCKGGTRALTLYVLGEALDGRIQRSDIEDFGKTHGFDLCAATRWLERQSAAVPHIKAFFDPRTWSVQYVVSDPATGGCAIIDPVYDFDEKSGATGTMNADAILDYVKRHGLSVEWILDTHPHADHFSAADYLKQKTGAKTAIGAKVTGVQKLWQEKYNWSDFKTDGSQWDQLFEAGDRFSIGSLEARVLFSPGHTLASVTYVVGNAAFVHDTLFMPDSGTARADFPGGSAKQLWASIQDILALPDDTRLFTGHDYQPGGRAPKWESTVGEQTRSNPHLAGMTEEDFVRLREARDRTLPMPKLILHALQVNIRGGRLPEPEANGKHYLKFPLDVLEGSTW", "sequence_length": 431, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "46a3befa49d4c988c3e78e43bac009724d061875b5ef02e9151c2982e5c19d3f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8UAA9.json", "taxon_id": "176299", "uniprot_accession": "Q8UAA9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Xylella fastidiosa (strain 9a5c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/blh-phosphatase-pf04273.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04273", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/blh-phosphatase-pf04273.yaml" } ], "pfam_ids": [ "PF00753", "PF04273" ], "protein_name": "Beta-lactamase hydrolase-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRIVDINERLAISGQPNTDEFINFARRGYRSIINLRPDGEEPNQPGNDAEQAAARRAGLAYNFVPVIGTSITEADIQAFQRAIATTEGSVLVHCKSGTRALMLYALSEVIDGRMKRDEVEALGHAHGFDLGRAVTWLERQAIQTPRVSGFFDPRTSSIQYVVTDQTTKRCAIIDPVLDFDEKSGATATTNADAILAHVEQQGLTVEWILDTHPHADHFSAAQYLKQRTGAPTAIGTHVTEVQRLWREIYNWPTLSANGSQWDHLFADGDVFNVGSIKGRVMFSPGHTLASVTYVIGDTAFVHDTIFMPDAGTARADFPGGSARALWSSIQTILSLPDETRLFTGHDYQPSGRHPRWESTVGEQKKANPHLAGVDETTFVALREARDKTLPMPKLILHALQVNVLGGRLPEPETNGRRYLKFPLNALEGAAW", "sequence_length": 431, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2345e1b1bda360ea34e85d39d30a5bb509755d54cab1779801029a4894989899", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9PFB0.json", "taxon_id": "160492", "uniprot_accession": "Q9PFB0", "uniprot_release": "2026_03" } ], "pfam_id": "PF04273", "short_name": "BLH_phosphatase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04276", "short_name": "DUF443", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04282", "short_name": "DUF438", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chef-arch-pf04283.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04283", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chef-arch-pf04283.yaml" } ], "pfam_ids": [ "PF04283", "PF29648" ], "protein_name": "Taxis protein CheF1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSESEYKIADGSGKFLQAVKDGRRMKDAQWSKGRILLSNKRIVLAGSEGKRNLPLSEVQGLSGRHDVNQTVAKVGNYVSIRMTNESVMLVSLGDNTETFESKLYGALLDQTELQVKHPAVEGGVVTDEQFERARIKVDESELSVAMSNGSFVSVELDDVGSAEAASLEVNGDTKPVLKVEHTVNRDTSVQTYFATDSHTASILESLLTKEAEKSQGSVELSETEKRVLMALYSGVSSFEIPDFLGMDVDEVESIFERLIEVDVLEEVRKRREVTMKTRGRNIASEAINEE", "sequence_length": 290, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cc3e9eda218e8875f56eae63c6096862c4a955184a023372c1e0eb152b6ff7e7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B0R4J3.json", "taxon_id": "478009", "uniprot_accession": "B0R4J3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chef-arch-pf04283.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04283", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chef-arch-pf04283.yaml" } ], "pfam_ids": [ "PF04283" ], "protein_name": "Taxis protein CheF2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSESAIADFVSSFIPDTATHVEPVRGRVVMSKRRIVLAADDEKTTIPLNGVFDVQHETAPGDLARFFEDTVTIAYEHDEDRHVAVIEGGGSTVDRFVTLVFKALVHGTTVYAKHPARRGGRITDQPFEKGNLALSPGDLTITGDADTTIDLSTVSHFERVDREVNGSNKQLLSVRHMGSTGPITTELALSSGRKMNLLGRYIRLQYTHLKQELADVTLTSEEIEALVAIYSSGPNASLAAVLGVDASRVTMLLNDLIEKELVTDDDGIALTSLGRAAVSEHIEDVNL", "sequence_length": 287, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e24c34b12b0d694d530ee4e12807bb9fa6ee3e1a41b73e58a1c5c9bddb955799", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B0R4J4.json", "taxon_id": "478009", "uniprot_accession": "B0R4J4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chef-arch-pf04283.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04283", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chef-arch-pf04283.yaml" } ], "pfam_ids": [ "PF04283" ], "protein_name": "CheF taxis protein family member MJ1615", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIDKSSEIARFSGKGILITPKTLEKPLLKWEKLEIILYKDKIVFEFVDKTIEVGVEDIEDVGAELPKKVIDIAKSTLEDITYHSSIIIKSKEFGNVMVGFAPETSIYGKAPIDNFLRKLFYILLNKKEVKILYNAGENSENTKWENGFLTFIKKRIKDGLVTKIEYRLVVEILDNEDSKIYDIFSNIKDVEIEEKDVDGEIEPVLKILQVKDGKDIISYLYTKDKKVRLFILRYMVILLDYKYIGILRYLQETVE", "sequence_length": 255, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7607616c36f8f3dd8eddcd98a0cfe514efdfa54f39c447583b2a676df3761522", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q59010.json", "taxon_id": "243232", "uniprot_accession": "Q59010", "uniprot_release": "2026_03" } ], "pfam_id": "PF04283", "short_name": "CheF-arch", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf441-pf04284.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04284", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf441-pf04284.yaml" } ], "pfam_ids": [ "PF04284" ], "protein_name": "UPF0756 membrane protein YeaL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLNTFFPWIEKQGLTVGIIILTIGVMAPIASGTLPSSTLLHSFENWKSLVAIAVGVFVSWLGGRGVALMGNQPQLVAGLLVGTVLGVALFRGVPVGPLIAAGLVSLIVGRQ", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "34fcd8182e39b700029a660cedcb54f99803b873045ef7112ed5fde8bb3f25c1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A9MFI4.json", "taxon_id": "41514", "uniprot_accession": "A9MFI4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf441-pf04284.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04284", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf441-pf04284.yaml" } ], "pfam_ids": [ "PF04284" ], "protein_name": "UPF0756 membrane protein YtwI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFTQANLFLILLLAIALIAKNQSLLFAVSVLLIIKIVGLDQKLFPTIQSKGINWGVTIITIAVLVPIATGEIGFKQLGEAMRSSYAWIALGAGIAVALIAKNGLTLLENDPHITTALVIGTILAVALFGGVAVGPLIGAGIAYLAMQIVKLFTS", "sequence_length": 154, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0e410b77f46511231b5b19c79d8d1e7cc9775663a76441195710a3747de35100", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34811.json", "taxon_id": "224308", "uniprot_accession": "O34811", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf441-pf04284.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04284", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf441-pf04284.yaml" } ], "pfam_ids": [ "PF04284" ], "protein_name": "UPF0756 membrane protein YeaL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLSTFFPWIEKQGLSIGIIILTIGVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVSWLGGRGVTLMGSQPQLVAGLLVGTVLGVALFRGVPVGPLIAAGLVSLIVGKQ", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "02a83bee1d8971bafebc15d1515f546600d82ce2943fa0a4ce0e660b152e3846", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ACY6.json", "taxon_id": "83333", "uniprot_accession": "P0ACY6", "uniprot_release": "2026_03" } ], "pfam_id": "PF04284", "short_name": "DUF441", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O1:K1 / APEC", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf444-pf04285.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf444-pf04285.yaml" } ], "pfam_ids": [ "PF04285" ], "protein_name": "UPF0229 protein YeaH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTWFIDRRLNGKNKSMVNRQRFLRRYKAQIKQSISEAINKRSVTDVDSGESVSIPTEDISEPMFHQGRGGLRHRVHPGNDHFVQNDRIERPQGGGGGSGSGQGQASQDGEGQDEFVFQISKDEYLDLLFEDLALPNLKQNQQRQLTEYKTHRAGYTANGVPANISVVRSLQNSLARRTAMTAGKRRELHALEENLAIISNSEPAQLLEEERLRKEIAELRAKIERVPFIDTFDLRYKNYEKRPDPSSQAVMFCLMDVSGSMDQSTKDMAKRFYILLYLFLSRTYKNVEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMDEVVKERYNPAQWNIYAAQASDGDNWADDSPLCHEILAKKILPVVRYYSYIEITRRAHQTLWREYEHLQSTFDNFAMQHIRDQDDIYPVFRELFHKQNATAKD", "sequence_length": 427, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8cbf39ad658b4077983546178c4080b7edd38bd6719da7aa6e83dc136ca483ab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1ABW3.json", "taxon_id": "405955", "uniprot_accession": "A1ABW3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/sporulation-protein-yhbh-tigr02877.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR02877", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/sporulation-protein-yhbh-tigr02877.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf444-pf04285.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF04285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf444-pf04285.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P45742", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04285" ], "protein_name": "Stress response UPF0229 protein YhbH", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "af0349b0ef2cfdad3bafd7356cc465446e33476331865fe7cf484acb5550cca3", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSQNDSGHFLISEENWSLHRKGFDDQQRHQKKVQEAIKNNLPDLVTEESIIMSNGKDVVKIPIRSLDEYKIRYNYDKNKHVGQGDGESQVGDVVARDGSDKKQGPGKGQGAGDQAGEDYYEAEVSLMDLEEALFKELELPNLQQKERDNIIHTDIEFNDIRKTGLTGNIDKKRTMMSAFKRNAMSGKPSFYPIYPEDLKYKTWNDITKPESKAVVLAMMDTSGSMGVWEKYMARSFFFWMTRFLRTKYETVEIEFIAHHTEARVVSEEDFFSKGESGGTICSSVYRKSLELIDEKYNPARYNIYPFHFSDGDNLTSDNARCVKLVNDIMKKANLFCYGEVNQYNRHSTLMSAYKNVKDEKFKYYILKQKSDVFQALKNFFRNEESGVSHQFS", "sequence_length": 392, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "af0349b0ef2cfdad3bafd7356cc465446e33476331865fe7cf484acb5550cca3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P45742.json", "taxon_id": "224308", "uniprot_accession": "P45742", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf003707.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF003707", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf003707.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf003708.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF003708", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf003708.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf444-pf04285.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf444-pf04285.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P76235", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04285" ], "protein_name": "UPF0229 protein YeaH", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8d49e9f6a15b8f2cd98a06059016d7d804c8193ba9a02b89388807b0ae961a46", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTWFIDRRLNGKNKSMVNRQRFLRRYKAQIKQSISEAINKRSVTDVDSGESVSIPTEDISEPMFHQGRGGLRHRVHPGNDHFVQNDRIERPQGGGGGSGSGQGQASQDGEGQDEFVFQISKDEYLDLLFEDLALPNLKQNQQRQLTEYKTHRAGYTANGVPANISVVRSLQNSLARRTAMTAGKRRELHALEENLAIISNSEPAQLLEEERLRKEIAELRAKIERVPFIDTFDLRYKNYEKRPDPSSQAVMFCLMDVSGSMDQSTKDMAKRFYILLYLFLSRTYKNVEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMDEVVKERYNPAQWNIYAAQASDGDNWADDSPLCHEILAKKLLPVVRYYSYIEITRRAHQTLWREYEHLQSTFDNFAMQHIRDQDDIYPVFRELFHKQNATAKG", "sequence_length": 427, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8d49e9f6a15b8f2cd98a06059016d7d804c8193ba9a02b89388807b0ae961a46", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76235.json", "taxon_id": "83333", "uniprot_accession": "P76235", "uniprot_release": "2026_03" } ], "pfam_id": "PF04285", "short_name": "DUF444", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus parasanguinis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf445-pf04286.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04286", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf445-pf04286.yaml" } ], "pfam_ids": [ "PF00746", "PF04286", "PF19258" ], "protein_name": "Fap1 adhesin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKYKRAGETSRKTRVKMHKSGKNWVRTLISQIGLMHFLGGSISEKKINVDVYEQKNISASTILKGAVALGALTGATVVSGNVFADETVLAKETTLTTTDANEVKLSSENFDSEKAEEKISLSQSESASESVSESISESVSESVSTSESVSESVSESVSESISESVSESISESISESVSESTSTSIVLSESGAASGNKATSKGTEEKQDSVRENLDKMISEAEVLNDMAARKLITLDAEQQLELMKSLVATQSQLEATKNLIGDPNATVADLQIAYTTLGNNTQALGNELIKLNPNGQIYAVLNNTEASRAATLRSTTTGTKTTFTISDFSNGGTQYYWAGGNANNLKNPISSISAVYDSATGKISWTVEYDPTTILKSPALKTLKTYTGIYIDTSSDSKLSTPTNVLIDGAATNPVTNFYGNGSKGIEYVSKGTTKGVTKHTITFDTAFSGRANDLADLKIKMLAATTLSDPHFYEDGSKGNYGRYNGQTAPYVIANDSGTAIGGYQVSGVNADSIPSDTTSQSESTSKSESTSKSISESVIESISESVIGSVSESVSESVSESVSESITESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESISESVSESVSESVSESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESVSESVSESISESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESISESVSESVSESISESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESVSESVSESVSESVSESISESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESVSESVSESVSESISESVSESVSESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESISESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESISESVSESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESVSESVSESVSESISESVSESVSESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESVSESVSESISESVSESVSESISESVSESVSESVSESVSESVSESISESVSESISESVSESVSESISESVSESVSESISERTLPNTGENVSSSLGLVGLSGLLFGALLGRKKRKSEDAE", "sequence_length": 2587, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3e7ec8cdba1d5d4bb37f04ddb51389dcdc81d402cec288322e8db62385833dd9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1C3L3.json", "taxon_id": "1318", "uniprot_accession": "A1C3L3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf445-pf04286.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04286", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf445-pf04286.yaml" } ], "pfam_ids": [ "PF04286" ], "protein_name": "Uncharacterized protein YjiN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKLIELRRAKRLALSLLLIAAATFVVTLFLPPNFWVSGVKAIAEAAMVGALADWFAVVALFRRVPIPIISRHTAIIPRNKDRIGENLGQFVQEKFLDTQSLVALIRRHEPALLIGNWFSQPENARRVGQHLLQIMSGFLELTDDARIQRLLKRAVHRAIDKVDLSGTSALMLESMTKNDRHQVLLDTLIAQLIALLQRDKSRKFIAQQIVRWLESEHPLKAKILPTEWLGEHSAELVSDAVNSLLDDISRDRAHQIRHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSEDSRVKERIARAGQWFGETLIADDALRASLNGHLEQAAHRVAPEFSAFLTRHISDTVKSWDARDMSRQIELNIGKDLQFIRVNGTLVGGCIGLILYLLSQLPALFPLGNF", "sequence_length": 426, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "661161f7ae9b8f2a6f7659a2195684d7db6230a87b795869d95009aa97290e25", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P39385.json", "taxon_id": "83333", "uniprot_accession": "P39385", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf445-pf04286.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04286", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf445-pf04286.yaml" } ], "pfam_ids": [ "PF04286" ], "protein_name": "UPF0754 thylakoid membrane protein sll0412", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLPLMMINYSLLLSLALPPIAGGIIGYFTNDLAIKMLFRPYKPLFLGPYQLPFTPGLIPRNQERLAKRVSDTIMGSLLTPEELQRLARKLLQRERVEGALGWLLQLALKQIREDKQQKTAQILANILRDLFSESLPRLLKALARQDNFLSDQINRIFDQILLEFRLSELQSRQFADWLLGTVLPPDTIRLALVDFLSDRNIQVIDEGFREKTSGTYWVVANLFGVRNSLTRLRAFCLEEKETANLRLKELLLSLEIRNRLKDWLQQLSLENLPVSTVRQLRRTTGEVVRTYIRERGEPLLKDFGSSVDWDNVAVLIVNRLQSSTAVTGSLGLVSEELASILERYLEDDLEKIVKQIIPILAIDQVIINRINETPAAELETAVQAIVRSELQAIVNLGGVLGLIIGGLQTGFFLVSRGF", "sequence_length": 419, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1a1ed6a096c42bb6a4f6111582d7b09c52405bf255ff16ba849e5cf4bda58577", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q55115.json", "taxon_id": "1111708", "uniprot_accession": "Q55115", "uniprot_release": "2026_03" } ], "pfam_id": "PF04286", "short_name": "DUF445", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/yqcc-like-domain-ipr023376.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/yqcc-like-domain-ipr023376.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf446-pf04287.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04287", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf446-pf04287.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/yqcc-like-superfamily-ipr036814.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036814", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yqcc-like-superfamily-ipr036814.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/yqcc-like-1-20-1440-40.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1440.40", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yqcc-like-1-20-1440-40.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q46919", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04287" ], "protein_name": "Uncharacterized protein YqcC", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f1ad09b30f47b5a331da339424054da07a9aa0832197ae2da8c2aefb550843c8", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTTHDRVRLQLQALEALLREHQHWRNDEPQPHQFNSTQPFFMDTMEPLEWLQWVLIPRMHDLLDNKQPLPGAFAVAPYYEMALATDHPQRALILAELEKLDALFADDAS", "sequence_length": 109, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f1ad09b30f47b5a331da339424054da07a9aa0832197ae2da8c2aefb550843c8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q46919.json", "taxon_id": "83333", "uniprot_accession": "Q46919", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pectobacterium carotovorum subsp. carotovorum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf446-pf04287.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04287", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf446-pf04287.yaml" } ], "pfam_ids": [ "PF00849", "PF04287" ], "protein_name": "tRNA pseudouridine synthase C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRENQVRQSLFDIERALRESPFWQVVPPEEEAFNSTEPFSLDTMKPEEWLQWVFLPRMHALLDSELALPRSWFYCLILKKRWKGRQKRPRRFCCVSSSSMSYSPPMYRMAQCTMLEIIYQDEHLVAVNKPSGWLVHRSWLDRKEKVVVMQTVRDQIGQHVYTVHRLDRPTSGVLLLALSSEVARALSQQFESHQMQKTYHAVVRGYVLDDGVIDYALTEELDKIADKFTNPDKAPQPAVTHYRSLAQAEMPVAIGRYPTARYSLMELKPQTGRKHQLRRHMSHIHHPIIGDTAHGDLRHNRGMESHFSCGRLMLHASELQLNHPVSGQPLTLQARWDAPWQGVVTQFGWKGILPEFEGVEFPADSGQDSEHFVEQ", "sequence_length": 376, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0020b6ed39e1f0482be44f129bfd8216dcf478c68e20171cc43f1ef0b1de4acd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q47417.json", "taxon_id": "555", "uniprot_accession": "Q47417", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf446-pf04287.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04287", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf446-pf04287.yaml" } ], "pfam_ids": [ "PF04287" ], "protein_name": "Uncharacterized protein HI_1436", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNQTKQHLEQLQITMQQLNLWQTMPPAAEAFLSEEPFSIDTMSAEEWLQWVFIPRMQALLESGSALPNKIAISPYIEEAMKEFNELQQLLTPLVALEELXNNNEC", "sequence_length": 106, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ec12ec3d8713c6d6806aa72a3e4e6df72cf6ea463896a6ad8f0c76780f38762a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57152.json", "taxon_id": "71421", "uniprot_accession": "Q57152", "uniprot_release": "2026_03" } ], "pfam_id": "PF04287", "short_name": "DUF446", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf447-c-pf20766.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20766", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf447-c-pf20766.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf447-n-pf04289.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04289", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf447-n-pf04289.yaml" } ], "pfam_ids": [ "PF04289", "PF20766" ], "protein_name": "Uncharacterized protein MTH_863", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGALKENSGKPSEVEYTHFKDLQALEMERGRLYETIVVTWDDSMVGNAAPIGVLCTGDDTVTLYLYQGTRTVENVLNNGRFTVNVTLDPLIFTDSTLGDLEEDMFSHYRDFLHLRGADAFFTAEVVSVKKLVKRDRFGESELHVVKARAGDVMRAESFRMALNRGIYAVIESLIAYTRAEFSDPLVLRERIAEMNRVARKVGGPREKEAMRRIIQALESKIS", "sequence_length": 223, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a17b3a69c4a833830081bc36cb85235e42b7026538146adef294332604b8e907", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O26951.json", "taxon_id": "187420", "uniprot_accession": "O26951", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf447-c-terminal-domain-ipr049288.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049288", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf447-c-terminal-domain-ipr049288.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf447-n-terminal-domain-ipr007386.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007386", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf447-n-terminal-domain-ipr007386.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf447-c-pf20766.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20766", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf447-c-pf20766.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf447-n-pf04289.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04289", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf447-n-pf04289.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/hypothetical-membrane-protein-ta0354-69-121-1-20-58-290.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.290", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/hypothetical-membrane-protein-ta0354-69-121-1-20-58-290.yaml" } ], "pfam_ids": [ "PF04289", "PF20766" ], "protein_name": "Uncharacterized protein MJ1453", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISEVVVTTRKNNRDNKAPIGVYFKDKKVIMHLFSGSHTYENLLTEDYFSVNVVPPIEIAKAVLDDEDDYLYYNDIPYLKSSYYAIFYKVIERKFVDREDKFGKNRLMILEGEEIKRIYLNNIPKPYNRADGLLVEIAVIYSRLANKNIKINEDDKKEMINDIRKYFSIIKKVGGREHKQLAEIMLRNLNLL", "sequence_length": 192, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c676670047d54797ba33a37e5bbc10ec44369aa2430b51dc8547a33b493b0806", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58848.json", "taxon_id": "243232", "uniprot_accession": "Q58848", "uniprot_release": "2026_03" } ], "pfam_id": "PF04289", "short_name": "DUF447_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/rnase-p-modulator-rnpm-nf047356.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF047356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/rnase-p-modulator-rnpm-nf047356.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P32728", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04296" ], "protein_name": "Nucleoid-associated protein YlxR", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "9509f148ad7adc13681f4500049b0667d62417160535e5cdcf33db54e3798456", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"sequence_length": 169, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4903b7af3b118bfc74b2c11a73750bb92aa1f932ce91380cdb22c5b93fcc0851", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P36087.json", "taxon_id": "559292", "uniprot_accession": "P36087", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fmn-bind-2-pf04299.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04299", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fmn-bind-2-pf04299.yaml" } ], "pfam_ids": [ "PF04299" ], "protein_name": "Uncharacterized protein AFUA_5G13800", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYLRAVHAETHIPLLQQFIRDNPLGILTTAIKSPNYPLLQSSHIPFVLDIPDTPTDKANSDLTPGTLRGHIAKQNPQAKALMEALAQHQAQTQSTTLELPDEVLILFNGPHHHYVTPKFYKDTKPATGKVVPTWNYSAVQAYGKITVYCDSKAEETGAFLSRQVNDLSRHAETAIMGYTGGERPGPWEVSDAPENYIELLKKNIIGVKVRIERLQGKFKMSQEMGAGDREGVIEGFEKLGTEVGMGIAKTVKERGDMKDKK", "sequence_length": 261, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "96827bea803873b77eaa7a59a6ffc01a1232be861f22813904f2201eb28b8d7a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4WVZ0.json", "taxon_id": "330879", "uniprot_accession": "Q4WVZ0", "uniprot_release": "2026_03" } ], "pfam_id": "PF04299", "short_name": "FMN_bind_2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, 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"commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/biog-pf04301.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04301", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/biog-pf04301.yaml" } ], "pfam_ids": [ "PF04301" ], "protein_name": "Uncharacterized protein HI_1552", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTKFYDYQGEHLILYFAGWGTPPDAVNHLILPENHDLLICYDYQDLNLDFDLSAYRHIRLVAWSMGVWVAERVLQGIRLKSATAVNGTGLPCDDSFGIPYAIFKGTLENLTENTRLKFERRICGDKASFERYQLFPARPFDEIHQELTALFAMIQQDKRIDLIHWANAWVSSRDKIFTPANQHQYWALRCAVQEIEGEHYVFSRFTHWSALWDH", "sequence_length": 215, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f6cb547852e264d6f74b1d2bccd4c2a95af5a7bedfe8d5b68755b15506f7a54", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44251.json", "taxon_id": "71421", "uniprot_accession": "P44251", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides fragilis (strain YCH46)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/biog-pf04301.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04301", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/biog-pf04301.yaml" } ], "pfam_ids": [ "PF04301", "PF08241" ], "protein_name": "Malonyl-[acyl-carrier protein] O-methyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLKRLYPPQKSVNSLHSETGTRCEVAGCPPLRKEALLFFAGWGMDETPFMHNLPPNKDLIICYDYRSLDFDSTLLSTYEGIYVVAWSMGVWAASQVLPDSNLPLKQSIAINGTPFPIDDMRGIPPAIFEGTLNNLNEATLQKFRRRMCGSGSAFQAFLEIAPQRPVEELKEELAAIGRQYSELPLSTFVWNKAIIGESDHIFPPKNQEQAWQKYCNEIQRYDGAHYDEKILKENLAPAAASSKLLIAQRFTKAIGTYPHEARVQQQIARKMCSLLQQHLPAHSLRRVVEFGCGTGTYSRLLLRSFRPEHLLLNDLCEEMRHSCRDILNERVSFLPGDAEALDFPHGTELITSCSVLQWFEHPDAFFRKCENILNAQGYIAFSTFGKENMKEIRQLTGQGLAYRSREELTASLSALYDIVHTEEEVISLNFNNPMEVLYHLKQTGVTGTCNQSWTRSKLNLFCQEYERLFSPGKGSVSLTYHPIYIIAKKR", "sequence_length": 491, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "547da7c01e52fd366872783b18ef4e7d28f81e66c6a70430f023b31bcd75bcce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q64VX6.json", "taxon_id": "295405", "uniprot_accession": "Q64VX6", "uniprot_release": "2026_03" } ], "pfam_id": "PF04301", "short_name": "BioG", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] 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"data/traits/function/molecular_function/go/intramolecular-oxidoreductase-activity-transposing-c-c-bonds-go0016863.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016863", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/intramolecular-oxidoreductase-activity-transposing-c-c-bonds-go0016863.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/prpf-pf04303.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04303", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/prpf-pf04303.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04303" ], "protein_name": "Putative isomerase YraM", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a0d14e24e16e36b4f35304c5678634015b62236228e8104e00d64cc3a9d39771", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVKTNVTIMRGGTSKGVFFHESAMPNNKNEWEPFLLDVMGSPDKRQIDGLGGGNSLTSKVAIIKKAYTSDIDVHYTFGQVSISEEKVDFKGNCGNISAAVGPFAIEEGLVKAKEPMTAVRILNTNTNKMIIAEVEVEDGQVKYDGDVTISGVPGSGSPIYLNFHDAAGSVTGHLLPTGNSSEFLDTSQGQIEVSIIDYANPLVFVEASSIGLDGTELAEEFTDLQLAQFEELRSIAAEKCGFASRFSATKLSPAVPKLAIVAKPEKYKDSTGAWHSSVEMDLHIRMMSMQKPHQALAVTGAICTTRALSVEGAIPARIAKNHSTKVRLAHSSGIIETMVEPTGIKIVRTARRIMDGTVYTHGDYQMM", "sequence_length": 367, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a0d14e24e16e36b4f35304c5678634015b62236228e8104e00d64cc3a9d39771", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O07931.json", "taxon_id": "224308", "uniprot_accession": "O07931", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/5-ec5------.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:5.-.-.-", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/enzymatic_activity/ec/5-ec5------.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/4-oxalomesaconate-tautomerase-nf033377.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF033377", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/4-oxalomesaconate-tautomerase-nf033377.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/prpf-pf04303.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04303", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/prpf-pf04303.yaml" } ], "pfam_ids": [ "PF04303" ], "protein_name": "Putative isomerase YbhH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP", "sequence_length": 350, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2e12cdc1a310395a6f3c7bcbdf0ab021edb5ab48c6a5d88b1d047fb000a9623a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAV8.json", "taxon_id": "83333", "uniprot_accession": "P0AAV8", "uniprot_release": "2026_03" } ], "pfam_id": "PF04303", "short_name": "PrpF", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/duf454-family-protein-nf007818.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007818", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/duf454-family-protein-nf007818.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf454-pf04304.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04304", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf454-pf04304.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AAR5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04304" ], "protein_name": "Inner membrane protein YbaN", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a9ed19c26d785892cc7f741394d6a366219e1e332649f457feb029f6aa7fa735", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDEKQEKH", "sequence_length": 125, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a9ed19c26d785892cc7f741394d6a366219e1e332649f457feb029f6aa7fa735", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAR5.json", "taxon_id": "83333", "uniprot_accession": "P0AAR5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf454-pf04304.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04304", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf454-pf04304.yaml" } ], "pfam_ids": [ "PF04304" ], "protein_name": "Inner membrane protein YbaN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDEKQEKH", "sequence_length": 125, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9ed19c26d785892cc7f741394d6a366219e1e332649f457feb029f6aa7fa735", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAR6.json", "taxon_id": "83334", "uniprot_accession": "P0AAR6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf454-pf04304.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04304", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf454-pf04304.yaml" } ], "pfam_ids": [ "PF04304" ], "protein_name": "Inner membrane protein YbaN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDEKQEKH", "sequence_length": 125, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9ed19c26d785892cc7f741394d6a366219e1e332649f457feb029f6aa7fa735", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAR7.json", "taxon_id": "623", "uniprot_accession": "P0AAR7", "uniprot_release": "2026_03" } ], "pfam_id": "PF04304", "short_name": "DUF454", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf455-pf04305.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04305", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf455-pf04305.yaml" } ], "pfam_ids": [ "PF04305" ], "protein_name": "Uncharacterized protein HI_0077", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTALITQFWQQVETALKTANPQEKCRLVNDLYDNLLPQIQLIKLEDFPEIVPQDNIAAFPEKPLLVAPKDVPKRSFATEEGYAATLHAIAHIEFNAINLGLDAAWRFGRNAQEELGEGLAFVKDWLRVAREESTHFSLVNEHLKTLGYQYGDFEAHAGLWEMAQATAHDIWERMALVPRVLEARGLDATPVLQEKIAQRKDFAAVNILDIILRDEIGHVYIGNHWYHALSKKRGLDAMKCFTELLHKYRIVIFKGVINTDARIQAGFTQHELDWIYEVEQTLKSYIKK", "sequence_length": 288, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1e9764773bf788252072ab80f507ea84bb4fe6e664bca5538b3773e47495ea91", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P43935.json", "taxon_id": "71421", "uniprot_accession": "P43935", "uniprot_release": "2026_03" } ], "pfam_id": "PF04305", "short_name": "DUF455", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf456-pf04306.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04306", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf456-pf04306.yaml" } ], "pfam_ids": [ "PF04306" ], "protein_name": "Uncharacterized protein YqgC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDMLYWLLIAAVFIIAFIGLVYPVIPSVVFIVAGFVLYGFLFSFSPYSYMFWLVEAVFAAVLFAADYVSNLLGVKRFGGSKAAIWGSTIGLLIGPFVIPVAGIILGPFIGAVCAELIVHQKDLKSAFKIGLGSLIGFLTGVIAKGIIQLLMIGYFLWTVL", "sequence_length": 160, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7dee8d1883ebf8372d1c05df291e513cad10056f719a696ba0dd903fdcc78f10", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54486.json", "taxon_id": "224308", "uniprot_accession": "P54486", "uniprot_release": "2026_03" } ], "pfam_id": "PF04306", "short_name": "DUF456", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ydjm-inner-membrane-n-terminal-domain-ipr007404.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007404", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ydjm-inner-membrane-n-terminal-domain-ipr007404.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ydjm-pf04307.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04307", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ydjm-pf04307.yaml" } ], "pfam_ids": [ "PF04307", "PF29897", "PF29898" ], "protein_name": "Uncharacterized protein YfhP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTGTHVVMGIALGGIATLDPVVGSDPAMAHAVMIATLAGSQAPDIDTVLKLKNNAVYIRNHRGFTHSIPAVLFWSVIIPAILYLFYPQADFLHLWLWTLLAVVLHVFVDIFNAYGTQAIRPFSKKWVALGLINTFDPFIFISHLAAIAIWYAGGSPGITFLSLYIILVGYYLVRLIMQLRIKRKLHEMIHDEIESIIISPTMKFRQWRIAVTTAHAFYVGRSMEGHVVILDTFNRVPVPETDVMHAAKQDDNIAAFLSFSPVYRWEVDTFKDHYEVRFIDLRYRSKGHYPFVAIVHIGHDLTIRSSYTGWIFSEEKLQKKLKLGSI", "sequence_length": 327, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "01bc8416b25eb0a78321f59e75dc05d5f04212c9f84497d8c171cb7c6238ccae", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31583.json", "taxon_id": "224308", "uniprot_accession": "O31583", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ydjm-inner-membrane-n-terminal-domain-ipr007404.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007404", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ydjm-inner-membrane-n-terminal-domain-ipr007404.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ydjm-pf04307.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04307", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ydjm-pf04307.yaml" } ], "pfam_ids": [ "PF04307" ], "protein_name": "Uncharacterized protein YvsG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGKTHIMGGIASCTAAAYYYGFDPVLMAASGAVGALIPDICHTQSKIGRKFPILSKVVSSVFGHRTFTHSLLFMLIMFFITSTYIPDKNISAGLMIGMASHLILDAWTVNGIKLLFPSTIRVRLPLYMKTGSFSEQLVLAGLTLASCYYFYMLFHGRMF", "sequence_length": 160, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "502b034ffbada316151be6a176e50a73a57903de36e21747f4b14852794831c8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32205.json", "taxon_id": "224308", "uniprot_accession": "O32205", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ydjm-inner-membrane-n-terminal-domain-ipr007404.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007404", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ydjm-inner-membrane-n-terminal-domain-ipr007404.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ydjm-pf04307.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04307", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ydjm-pf04307.yaml" } ], "pfam_ids": [ "PF04307" ], "protein_name": "Inner membrane protein YbcI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVFIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMLLMGMLWWRRR", "sequence_length": 173, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9ddbc0d346067d8ca0c60a2d5cc56953a41850b978f3f01a244cc14e24e9038e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P45570.json", "taxon_id": "83333", "uniprot_accession": "P45570", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/metal-dependent-hydrolase-nf008651.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008651", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/metal-dependent-hydrolase-nf008651.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ydjm-inner-membrane-n-terminal-domain-ipr007404.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007404", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ydjm-inner-membrane-n-terminal-domain-ipr007404.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ydjm-pf04307.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04307", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ydjm-pf04307.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P64481", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04307" ], "protein_name": "Inner membrane protein YdjM", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "da28106d9647e91b327557cf15105f99923b70d87f14cad1bea1e385dca5ad97", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLLPDIDHPKSFLGQRLKWISKPIARAFGHRGFTHSLLAVFALLATFYLKVPEGWFIPADALQGMVLGYLSHILADMLTPAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSVWMPHSLPENSAVRWSSQMINTLQIQFHRLIKHQVEY", "sequence_length": 196, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "da28106d9647e91b327557cf15105f99923b70d87f14cad1bea1e385dca5ad97", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P64481.json", "taxon_id": "83333", "uniprot_accession": "P64481", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ydjm-inner-membrane-n-terminal-domain-ipr007404.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007404", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ydjm-inner-membrane-n-terminal-domain-ipr007404.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ydjm-pf04307.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04307", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ydjm-pf04307.yaml" } ], "pfam_ids": [ "PF04307" ], "protein_name": "Uncharacterized protein MJ0790", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNWKGHTILGIIFGLPFISSPEQIFLALAGALYPDLDHDVKEDIVKRGLLISGGIVFINILLYFFDKHLFNVDLFILGVLILLIYLIPYFSDHRGLTHTFWSLLFVSSILGYLAYKLSFISSVFAGLISLLMVTNEVLLGRVMIFAVFAWAVLDILNPNINVNGALYYILPVVFGYLSHLVGDTMTPAGVRAFYPLSNYKLRKKEGYILVAIWALMAVYVWKYMILSLL", "sequence_length": 229, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a8ef973c38c978ecc4ef0fba9a9eab1e65ab235c2da4c9b5a7ebbf88cdb0a834", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58200.json", "taxon_id": "243232", "uniprot_accession": "Q58200", "uniprot_release": "2026_03" } ], "pfam_id": "PF04307", "short_name": "YdjM", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rnaseh-like-pf04308.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04308", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rnaseh-like-pf04308.yaml" } ], "pfam_ids": [ "PF04308" ], "protein_name": "Uncharacterized protein YkuK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADSFLFYNLSEAQMTFQDVMERLKAFVQKDPRSSYVLSIGTDSQVYRDYTKFITALHLHRTGKGAWGCLKNHTVDRPIHSLREKISLETAYSQETAAHILDGHLMDITDLLLPFTGEGADLTFEVHLDIGKKGLTKDLIQEMTGRITSMGIEAKIKPDSYTAFSYANRFTK", "sequence_length": 172, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60a415ecaeb1bd8b4f63872e8666adb4652b3e38ee7af6570b831ca7a9263836", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34776.json", "taxon_id": "224308", "uniprot_accession": "O34776", "uniprot_release": "2026_03" } ], "pfam_id": "PF04308", "short_name": "RNaseH_like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04311", "short_name": "DUF459", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04312", "short_name": "DUF460", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ecor124-c-pf12008.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ecor124-c-pf12008.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hsdr-n-pf04313.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04313", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hsdr-n-pf04313.yaml" } ], "pfam_ids": [ "PF04313", "PF12008", "PF18766", "PF22679" ], "protein_name": "Type I restriction enzyme EcoR124I/EcoR124II endonuclease subunit", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTHQTHTIAESNNFIVLDKYIKAEPTGDSYQSESDLERELIQDLRNQGYEFISVKSQSAMLANVREQLQNLNGVVFNDSEWRRFTEQYLDNPSDGILDKTRKIHIDYICDFIFDDERLENIYLIDKKNLMRNKVQIIQQFEQAGSHANRYDVTILVNGLPLVQIELKKRGVAIREAFNQIHRYSKESFNSENSLFKYLQLFVISNGTDTRYFANTTKRDKNSFDFTMNWAKSDNTLIKDLKDFTATCFQKHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTIDAITLFGDKNTKNVVLEKSYTEYMEGFTDAATGEAKRGFMTVVSELEQRFPDPTSIESEKEKKDFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEALIKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTKKQAVFQKIVSFIEKFKGVGGKI", "sequence_length": 1038, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "575aa98425644770fb6ef881dac396a41923f422907e1859821b1c4ca8290c7e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P10486.json", "taxon_id": "562", "uniprot_accession": "P10486", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hsdr-n-pf04313.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04313", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hsdr-n-pf04313.yaml" } ], "pfam_ids": [ "PF04313", "PF12008", "PF18766", "PF22679" ], "protein_name": "Type I restriction enzyme SsaAORF53P endonuclease subunit", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVYQSEFALETEMMEQLKSNGYETVTIRNEQQLLDNFRSILNERHADKLNGDPLTDKEFQRLLTMINGKGIFESARILRDKMPLKRDDESEVYLSFLDTRHWCQNKFQITNQVSVDDTYKARYDVTILINGLPLVQIELKRRGIDINEAFNQVMRYRKQNYTGLFRYIQLFIISNGIDTRYISNNDGEIYKSHMFYWSDKENNRINTLNEFTETFLRPCHIAKMISRYMILNETDNILMAMRPYQVHAVEALIHQATETSNNGYIWHTTGSGKTLTSFKASQVLSEQDDIKKVIFLVDRKDLDSQTEEEFNKFSKGSVDKTNNTAQLVKQLKDKSLPLIVTTIQKMSKAIQNNAEALDQYKTDKVVFIIDECHRSQFGDMHRIVRQHFNNAQYFGFTGTPRFEENQSQDGRSTADIFGRCLHTYLIKDAIHDGNVLGFSVDYINTIKAQNIDTETDELVEGINTDEVWLSDQRVELIARHITENHDKYTRNRQYSAIFTVQSIPALVKYYDAFKKISKDYEHPLKVAGVFSYAANEERNEGEVDEAHSRGKLEEVIQDYNLNFGTNFSTDTFQEYFNHISKNVKKGVKDNKIDVLIVVNMFLTGFDSKVLNTLYVDKNLKYHDLIQAYSRTNRVEKETKPFGKIVNYRDLKQNTDNALKLFSQTEDTDRVLMRDYDEYKAEFVDALAELKAVALKPQDMDQVQDENEKKAFVEAFRLVSKLVLRLKAFDEFDFTKANIGMNEQEFEDYKSKYFAIYDEVKPKRGEVEKVSILNDIDFEIEILRNDRINVSYIMDLVRQIDLKDKAEQQRNRDQIRRMLDNADDPTLRLKRDLLREFIDDVIPELSEEDNIDEAYILFENAKRESEFNQFAQQQAVDEQVLKDITGEYEYSGIVNQDHLKELVGDKKLREKRQTKKAVTSFVEEVSEKYSS", "sequence_length": 930, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f921f19bf186a5f12927ffe2ce01e6bca11611f5f066f518b692b54d397b98d9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4A127.json", "taxon_id": "342451", "uniprot_accession": "Q4A127", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/type-i-site-specific-deoxyribonuclease-activity-go0009035.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009035", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/type-i-site-specific-deoxyribonuclease-activity-go0009035.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hsdr-family-type-i-site-specific-deoxyribonuclease-tigr00348.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00348", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hsdr-family-type-i-site-specific-deoxyribonuclease-tigr00348.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/n-terminal-domain-of-hsdr-motor-subunit-of-type-i-restriction-modifica-cd22332.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/restriction-endonuclease-type-i-hsdr-n-terminal-ipr007409.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007409", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/restriction-endonuclease-type-i-hsdr-n-terminal-ipr007409.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", 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"ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/dexh-box-helicase-domain-of-type-i-restriction-enzyme-hdsr-subunit-the-cd18030.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd18030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/dexh-box-helicase-domain-of-type-i-restriction-enzyme-hdsr-subunit-the-cd18030.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/n-terminal-domain-of-hsdr-motor-subunit-of-type-i-restriction-modifica-cd22332.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22332", "section": "canonical_examples", "url": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/swi2-snf2-atpase-ipr040980.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/t1r-d3-like-pf22679.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22679", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/t1r-d3-like-pf22679.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/swi2-snf2-pf18766.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18766", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/swi2-snf2-pf18766.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-90-1570-50-3-90-1570-50.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.90.1570.50", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-90-1570-50-3-90-1570-50.yaml" } ], "pfam_ids": [ "PF04313", "PF18766", "PF22679" ], "protein_name": "Putative type I restriction enzyme MjaVIIIP endonuclease subunit", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKMPIPEIYVHNDIEENLNKLGWKELEGYEGEAFSNYIIKPILEEQLKIINDHIGEYKDEFIEKAINKLINEPKPEEILDYIKNGILITLDKGRKGQVSNRVKLIDYKNIEKNIFNYAHELKFKGNDNIIPDFTLFINGIPIIIIEAKREFSEKETYEEAINQINRYEREAPKLFNYVQFAIVYGDEKLYIPTYPNEEKEDRFKKPYKWKNEKKEEDIWDLLKRERVLDTIKNFIFFSKDRAGRKTKIIPRYMQYWAVKKAYERITNYLNNKDYKNRGLVWHWQGSGKTFEILYLAELFYNEFKNKDPIVFIMVDRRELETQFNDDIIALQNANFKDCFKKINSVEELKGVLEDIKESENNPNISEKGVYLVMMHKFDKNKLKDFIESFGSIDKKEILILRDEAHRTESGKFATLRNKILKNAIAIGFTGTPVHKKDMSTFKEYAYPQEGEFYLDRFFIEESIKEGFTLPLIWRVVKPEDIKDISEEEIKNIIEKLFVDEEDADKIVVSKKEIAEKIKLSDLLKSESSIKEASKYIAEHILEDTENFKFKAMVVAQDRKSCILFKKYLDEYLKEKIKNYNENWTQVVITYIHNDDVEIENYKKEIEKKYGKNVDELNKKWTEDFINKENPKILIVNKKLLTGFDAPILKTIYIHQFLKDYLLLQASARANRPAKNKKYGLIVDLTGILIENYKKAIENYNLYRDEAINKDILNNLFVETSKIWESFLTKLNEFKELFKLIVGIEFDDFIVNLKKQKNSKEFKKIISKIILSDKFDYFYAKLRELIQLFEAVGAYGEKLNYYETYEWLKIISAGINKQMRPKSYKIPYNQIKKEVIKYLEFDTYADIASTSINPQLLENLKNKDEINVIVADMIYYALDTLQNKKEPIYRMIYDRINELKNAYISKTKKNEYVINELINCLNALKTYEEEEKTLSKSEKAIKNMLFYLKNVENCNIKKLPLTEKTLKNLEDKKLIKPSDFDKIKKFLFVDLKNAIKETEKRRKVSNKIVEEIIKPIFI", "sequence_length": 1018, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c15b023953302e6269ea45fd3be25930420ae75742806b889d31da35ffbb7b6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q58611.json", "taxon_id": "243232", "uniprot_accession": "Q58611", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain COL)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hsdr-n-pf04313.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04313", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hsdr-n-pf04313.yaml" } ], "pfam_ids": [ "PF04313", "PF12008", "PF18766", "PF22679" ], "protein_name": "Type I restriction enzyme SauCOLORF180P endonuclease subunit", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYQSEYALENEMMNQLEQLGYERVTIRDNKQLLDNFRTILNERHADKLEGNPLTDKEFQRLLTMIDGKSIFESARILRDKLPLRRDDESEIYLSFLDTKSWCKNKFQVTNQVSVEDTYKARYDVTILINGLPLVQVELKRRGIDINEAFNQVKRYRKQNYTGLFRYIQMFIISNGVETRYFSNNDSELLKSHMFYWSDKQNNRINTLQSFAESFMRPCQLAKMISRYMIINETDRILMAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVDRKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLPLIVTTIQKMAKAIQGNAPLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKNAQYFGFTGTPRFPENSSQDGRTTADIFGRCLHTYLIRDAIHDGNVLGFSVDYINTFKNKALKAEDNSMVEAIDTEEVWLADKRVELVTRHIINNHDKYTRNRQYSSIFTVQSIHALIKYYETFKRLNKKLEQPLTIAGIFTFKPNEDDRDGEVPYHSREKLEIMISDYNKKFETNFSTDTTNEYFNHISKNVKKGVKDSKIDILIVVNMFLTGFDSKVLNTLYVDKNLMYHDLIQAYSRTNRVEKESKPFGKIVNYRDLKKETDDALRVFSQTNDTDTILMRSYEEYKKEFMDAYRELKMIVPTPHMVDDIQDEEELKRFVEAYRLLAKIILRLKAFDEFEFTIDEIGMDEQENEDYKSKYLAVYDQVKRATAEKNKVSILNDIDFEIEMMRNDTINVNYIMNILRQIDLEDKAEQRRNQEQIRRILDHADDPTLRLKRDLIREFIDNVVPSLNKDDDIDQEYVNFESIKKEAEFKGFAGERSIDEQALKTISNDYQYSGVVNPHHLKKMIGDLPLKEKRKARKAIESFVAETTEKYGV", "sequence_length": 929, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "120fbbedcb6c0e330991990bc00d00b2471feca48f2caaeb748d9ba13ca07277", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5HJH8.json", "taxon_id": "93062", "uniprot_accession": "Q5HJH8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ecor124-c-pf12008.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ecor124-c-pf12008.yaml" } ], "pfam_ids": [ "PF04313", "PF12008", "PF18766", "PF22679" ], "protein_name": "Type I restriction enzyme SepRPIP endonuclease subunit", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVYQSEYALENEVLQQLENLGYERVNIHNVEQLHDNFRTIINERHKEKLNGKPLTDREFERLMTGINGKSVFDSAMQLRDSYVLKRDDDTDLYLNFMNLKQWCQNKFQVTNQISVKDKYKSRYDVTILINGLPLVQIELKRSGVAITEAFNQIERYRRQNYTGLFRYIQLFVVSNKMETRYYANSDREIFKGQMFYWSNEQNERINYLKDFIEDFLESCHISKMISRYMVVNETDKFLMALRPYQVYAVEAILNRALETNNNGYIWHTTGSGKTLTSFKASQLLSQEENIKKVIFLVDRKDLDNQTLAEFNKFQEDSVDFTDNTRKLLKQLADPTLPLIVTTIQKMANAVKSNHSVMESYKQDKVIFIIDECHRTQFGDMHRLIKQHFENAQYFGFTGTPRFEENKSQDGRATADIFDKCLHHYLIKDAIRDHNVLGFSVEYNQTFNSHEDLDEEYISKINTSEIWMADERIEAVCRHLISNYHKKTDNGNYTSMFAVQSIPMAIKYYDTFQRLKNEGVHDLNVATIFTYQANEDAQEDENHVHSREVLDRIMNDYNQTFKTNYNTDNFEGYFSDVSKRMKEVVRDDKIDILIVVNMFLTGFDSKKLNTLYVDKNLKHHDLIQAYSRTNRVEKERKPYGNIVCYRDLKKQTDEAIEIFSQTDNTDTVLSLSYEEYLDNFKDILQDVFQLAPTPLDVDKLEAEDLKKEFVISFRDLSNTLIKLKTFDEFQFTEDELGIAEQTYEDYKGKYLNIYEEVMRGKKVDGEEGVSVLDDIDFQVELMRNDLINVKYIMDLIGQINLSDAKARDEKRHQIHKLLDKADDQQLRLKADLIRSFLDKVVPSLKEDSDINEAYYEFEDKEKTKEIDAFAEQKAFSAMLLNEAVNEYEYSGNIDRKSIGQNISEPFMKRKRKTDQIIQFIEDTVEKYGVVE", "sequence_length": 930, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "edba23e06f040d732618cf0c5ee1b4b0603a0c4676a71b1e1f5676d7e5b3b32c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5HK76.json", "taxon_id": "176279", "uniprot_accession": "Q5HK76", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain MRSA252)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ecor124-c-pf12008.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ecor124-c-pf12008.yaml" } ], "pfam_ids": [ "PF04313", "PF12008", "PF18766", "PF22679" ], "protein_name": "Type I restriction enzyme SauMRSORF196P endonuclease subunit", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYQSEYALENEMMNQLEQLGYERVTIRDNKQLLDNFRTILNERHADKLEGNPLTDKEFQRLLTMIDGKSIFESARILRDKLPLRRDDESEIYLSFLDTKSWCKNKFQVTNQVSVEDTYKARYDVTILINGLPLVQVELKRRGIDINEAFNQVKRYRKQNYTGLFRYIQMFIISNGVETRYFSNNDSELLKSHMFYWSDKQNNRINTLQSFAESFMRPCQLAKMISRYMIINETDRILMAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVDRKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLPLIVTTIQKMAKAIQGNAHLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKNAQYFGFTGTPRFPENSSQDGRTTADIFGRCLHTYLIRDAIHDGNVLGFSVDYINTFKNKALKAEDNSMVEAIDTEEVWLADKRVELVTRHIINNHDKYTRNRQYSSIFTVQSIHALIKYYETFKRLNKKLEQPLTVAGIFTFKPNEDDRDGEVPYHSREKLEIMISDYNKKFETNFSTDTTNEYFNHISKNVKKGVKDSKIDILIVVNMFLTGFDSKVLNTLYVDKNLMYHDLIQAYSRTNRVEKESKPFGKIVNYRDLKKETDDALRVFSQTNDTDTILMRSYEEYKKEFIDAYRELKMIVPTPHMVDDIQDEEELKRFVEAYRLLAKIILRLKAFDEFEFTIDEIGMDEQENEDYKSKYLAVYDQVKRATAEKNKVSILNDIDFEIEMMRNDTINVNYIMNILRQIDLEDKAEQRRNQEQIRRILDHADDPTLRLKRDLIREFIDNVVPSLNKDDDIDQEYVNFESIKKEAEFKGFAGERSIDEQALKTISNDYQYSGVVNPHHLKKMIGDLPLKEKRKARKAIESFVAETTEKYGV", "sequence_length": 929, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dd4640cdd43cbf3fec9b72a9fedef2b0c89a93660630c9c10cfac22da575e147", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6GKB1.json", "taxon_id": "282458", "uniprot_accession": "Q6GKB1", "uniprot_release": "2026_03" } ], "pfam_id": "PF04313", "short_name": "HSDR_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04314", "short_name": "LpqE-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/epmc-pf04315.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04315", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/epmc-pf04315.yaml" } ], "pfam_ids": [ "PF04315" ], "protein_name": "Elongation factor P lysine hydroxylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEHKLEDIIAIFNQCFEEEYNTRLVKGGDEPIYLPANDEVPYNAIYFARGFYSSALHEIAHWLVAGKERRKLEDFGYWYEPDGRSEERQRDFEKVEVKPQALEWILATAAGFRYFASADNLNGNPGDTQPFKQAVYEQVKIYAEKGLPKRAETLRKALVAFYSTEDDINLAKFDVTCI", "sequence_length": 178, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "52dd33f073cd5ec4abe60705224d92a37b5f4f2782124ab3dcc52061742e0e5c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44255.json", "taxon_id": "71421", "uniprot_accession": "P44255", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/epmc-pf04315.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04315", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/epmc-pf04315.yaml" } ], "pfam_ids": [ "PF04315" ], "protein_name": "Elongation factor P lysine hydroxylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSTHHYEQLIEIFNSCFADDFNTRLIKGDDEPIYLPADAEVPYNRIVFAHGFYASAIHEISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEDVEVKPQALDWLFCVAAGYPFNVSCDNLEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKALQNYYHTPELTAEQFPWPEALN", "sequence_length": 182, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f79c9c4df1a0d16e64b61a3bc206743d3ead653d3822fe34568a99e36b12de62", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76938.json", "taxon_id": "83333", "uniprot_accession": "P76938", "uniprot_release": "2026_03" } ], "pfam_id": "PF04315", "short_name": "EpmC", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf463-pf04317.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04317", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf463-pf04317.yaml" } ], "pfam_ids": [ "PF04317" ], "protein_name": "Ras-like GTPase HI_1637", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFNRVQKEINQIINRGFDRTLRLAVTGLSRSGKTAFITSLINQLLSINQHSSQNLPLFEAARNGSILAVKRVSQQDLSVPRFDYESNLNDLSQNPPQWFQSTRGVSETRLAIRFQRQSGLLRHLKERGTLYLDIFDYPGEWLLDLPLLNLDFQQWSQEQIKVTTGVRAELAQNWLSMLQNLDLSAVANEDVLAKIAKSYTDYLHQCKAQGMQFIQPGRFVLPSDLEGAPALQFFPLIHLSGEHWQTLKKTAKSNSYFAVLTKRYNYYRNKIVKGFYENYFSTFDRQVILADCLTPLNHSQQAFLDMQMGLNQLFNNFHYGSRNFLHRLFSPQIDRLMFVATKADHITRDQIPNLVSLMRQIVQEGGRHVEFEGIDTEYTAIAAVRTTKQVIVNQQGKEIKAIQGVRSIDKQLITLYPGTVPSKLPKTEFWQKQPHFDFDSFEPQPLEQGESIPHLRMDAVLQFLLSDRFE", "sequence_length": 470, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9f3242eee47a5813bfbf357ebd90cab8ea263a8b6a294ca003c2ee2b888aa1e2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44280.json", "taxon_id": "71421", "uniprot_accession": "P44280", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf463-pf04317.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04317", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf463-pf04317.yaml" } ], "pfam_ids": [ "PF04317" ], "protein_name": "Ras-like GTPase YcjX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRLKNELNALVNRGVDRHLRLAVTGLSRSGKTAFITAMVNQLLNIHAGARLPLLSAVREERLLGVKRIPQRDFGIPRFTYDEGLAQLYGDPPAWPTPTRGVSEIRLALRFKSNDSLLRHFKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMTGLLNGQRGEWSAKWRMMSEGLDPLAPADENRLADIAAAWTDYLHHCKEQGLHFIQPGRFVLPGDMAGAPALQFFPWPDVDTWGESKLAQADKHTNAGMLRERFNYYCEKVVKGFYKNHFLRFDRQIVLVDCLQPLNSGPQAFNDMRLALTQLMQSFHYGQRTLFRRLFSPVIDKLLFAATKADHVTIDQHANMVSLLQQLIQDAWQNAAFEGISMDCLGLASVQATTSGIIDVNGEKIPALRGNRLSDGAPLTVYPGEVPARLPGQAFWDKQGFQFEAFRPQVMDVDKPLPHIRLDAALEFLIGDKLR", "sequence_length": 465, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "de4a2490bffd2414b72ac4def403e308a10bbda6a74cecc382d2fcaffaa35f4f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76046.json", "taxon_id": "83333", "uniprot_accession": "P76046", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf463-pf04317.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04317", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf463-pf04317.yaml" } ], "pfam_ids": [ "PF04317" ], "protein_name": "Ras-like GTPase YcjX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGMLDVSLHKITQKSQSLLHRTADRHLRLAVTGLSGAGKTAFITGLVNQLLNSGAVSTVSHSRQNGLPLWQVSREQRLLGVKRAMQPDLEIASFDYQGAMLALTSNPPTWPESTRTISELRLAIKYRPEKGLLAKFADAATLYLDIVDYPGEWLLDLPMLRQSYIEWCTTQQQRIAVLKSSPLYAGFETSLNALNLAAMADESELKRLADQYQQLLHDLVHVQGYYQAQPGRMLLPGEWQGAPLLAFFPLLSVTNAQWSNLKQSDKHSAFHVLEKRYQEYVAKVVKPFYKQHFAGFDRQVVLVDCFSALNRGKSQFEDMGAALNAIMESFQYGQSSYLRRLFAPRIDRLLFAASKVDHVTRDQQSHVLSLLTDMLKHSQHFAGFEGCKVETMAISAIKATRHGMVTTQEGDVEVVQGTGLNGQALTLFPGEVPTRLPEPDFWREQGFNFIGFAPPDNTNVDPSSVHFDHIRLDHLLQYLVGDKLE", "sequence_length": 485, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "67e88c27d1aa137f9820fe35ae2dcf13f229691997ea743bbff2a8d540bb5422", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8EG04.json", "taxon_id": "211586", "uniprot_accession": "Q8EG04", "uniprot_release": "2026_03" } ], "pfam_id": "PF04317", "short_name": "DUF463", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf468-pf04318.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04318", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf468-pf04318.yaml" } ], "pfam_ids": [ "PF04318" ], "protein_name": "Putative UPF0320 protein YKL225W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRIYHSQLTLLSHSTPWPSLTKSVRCTHIIIHGTCLSGLYPVQFTHKTHDYPHFNIYISFSGSKYCITALNAYIIPLLLHILTIQFIHTYFNIPTKSPLKLPKHKNILLFNNNT", "sequence_length": 115, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "88d4773c995a9c4329dc92fd817691f696ed2e67c791636d5529e8faea7d8e0e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P36030.json", "taxon_id": "559292", "uniprot_accession": "P36030", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf468-pf04318.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04318", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf468-pf04318.yaml" } ], "pfam_ids": [ "PF04318" ], "protein_name": "UPF0320 protein YOL166W-A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHGACLSGLYPLPFTHKFHDYLHFNIYISFGGPKYCITALNTYVILFYTVY", "sequence_length": 51, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "83bdf73812753a333dd3c7b48b7e868dbffb10bde49d9e20afeb15fc41504a8c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TGJ1.json", "taxon_id": "559292", "uniprot_accession": "Q8TGJ1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf468-pf04318.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04318", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf468-pf04318.yaml" } ], "pfam_ids": [ "PF04318" ], "protein_name": "Putative UPF0320 protein YLL065W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQYIPLSNLPYSHIPLHHPSLTISTKCTRIIMHGTCLSGLYPVPFTHKVHHYPHFNIYISFGDPKYCITALNTYVIPLLHHILTTQFIHTYFNIPTKSPPKSPKHKNYLSFNFTK", "sequence_length": 116, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "11ac5c0107137114855a54a071ea31e764157468a295163262a859de6dcf2d2d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q99339.json", "taxon_id": "559292", "uniprot_accession": "Q99339", "uniprot_release": "2026_03" } ], "pfam_id": "PF04318", "short_name": "DUF468", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008685.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008685", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008685.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yggl-50s-bp-pf04320.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04320", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yggl-50s-bp-pf04320.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P38521", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04320" ], "protein_name": "Ribosome assembly factor YggL", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/acp-phosphodiesterase-nf007466.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acp-pd-pf04336.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04336", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acp-pd-pf04336.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P21515", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04336" ], "protein_name": "Acyl carrier protein phosphodiesterase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "606c2aadfdb5576da9af7c3127bf055127d063381049f3a548a95a54a4a6d5f8", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVREAREWFRSETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFVCYAREQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALRDSWYDLDAHYDALETRFWQFYPRMMAQASRKAL", "sequence_length": 193, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "606c2aadfdb5576da9af7c3127bf055127d063381049f3a548a95a54a4a6d5f8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P21515.json", "taxon_id": "83333", "uniprot_accession": "P21515", "uniprot_release": "2026_03" } ], "pfam_id": "PF04336", "short_name": "ACP_PD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shewanella baltica (strain OS155 / ATCC BAA-1091)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf480-pf04337.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04337", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf480-pf04337.yaml" } ], "pfam_ids": [ "PF04337" ], "protein_name": "UPF0502 protein Sbal_1765", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELTLHEARVIGCLLEKEITTPEQYPLSLNSLTLACNQKTSREPVLELSETQVQIAVDSLNRKRLISEQSGFGSRVVKYKHRFCNTEFSELQLSPAALAIVCLLLLRGPQTPGELRTRSNRLHEFKDVIEVEDCIRQLMNREKPFLKQLPREAGRRESRYVELFSAASSQLETAQPESASHTVAHVAVSLDAEPLELTKRVTELEQQVAELTQKLDELIASLS", "sequence_length": 223, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6289910ebc4efda8cbb1cebc13a496f8f080fc48b40e1163c94c3fb6f453608c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A3D3F9.json", "taxon_id": "325240", "uniprot_accession": "A3D3F9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf480-pf04337.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04337", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf480-pf04337.yaml" } ], "pfam_ids": [ "PF04337" ], "protein_name": "UPF0502 protein VC0395_0676/VC395_A0574", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIQLSPLEARVIGCLIEKEVTTPDHYPLTLNSLTTACNQKSNREPVLNLSEAEVQDTVEGLIARRLVSDESSFNSRTSKYQHRFCNTEFGDLKLNQQELGLICCLLLRGAQTPGELRTRTNRLCTFTDVKETEAVLERLANRDSGALVVKLPREPGKRESRYHHLFCGEVDMAAFATSSDNEANASSQYAELEQEVAALREEVAELRALIERHLG", "sequence_length": 216, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c94bb4a698c3541ba151b691e97e2763981bfbc5f2a416cb33a3a0c8b9feb7a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5EZS7.json", "taxon_id": "345073", "uniprot_accession": "A5EZS7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008413.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008413", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008413.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf480-pf04337.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04337", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf480-pf04337.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P29217", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04337" ], "protein_name": "UPF0502 protein YceH", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0c090efada30c94ba9a5c068280b4c185e759e546b42344e23b4b4da6eef6de1", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKYQLTALEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNREPVMNLSESEVQEQLDNLVKRHYLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVALITTLLLRGAQTPGELRSRAARMYEFSDMAEVESTLEQLANREDGPFVVRLAREPGKRENRYMHLFSGEVEDQPAVTDMSNAVDGDLQARVEALEIEVAELKQRLDSLLAHLGD", "sequence_length": 215, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0c090efada30c94ba9a5c068280b4c185e759e546b42344e23b4b4da6eef6de1", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P29217.json", "taxon_id": "83333", "uniprot_accession": "P29217", "uniprot_release": "2026_03" } ], "pfam_id": "PF04337", "short_name": "DUF480", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf481-pf04338.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04338", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf481-pf04338.yaml" } ], "pfam_ids": [ "PF04338" ], "protein_name": "Uncharacterized protein YdiY", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLLKTVPAIVMLAGGMFASLNAAADDSVFTVMDDPASAKKPFEGNLNAGYLAQSGNTKSSSLTADTTMTWYGHTTAWSLWGNASNTSSNDERSSEKYAAGGRSRFNLTDYDYLFGQASWLTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRYDKYTDNASETQPLGYASGAYAWQLTDNAKFTQGVSVFGAEDTTLNSESALNVAINEHFGLKVAYNVTWNSEPPESAPEHTDRRTTLSLGYSM", "sequence_length": 252, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6e33388c21431a5d920109d965a79628ecb7ca4b6fc63278d16457bcb5424a8b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76206.json", "taxon_id": "83333", "uniprot_accession": "P76206", "uniprot_release": "2026_03" } ], "pfam_id": "PF04338", "short_name": "DUF481", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04339", "short_name": "FemAB_like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008203.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008203", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008203.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf484-pf04340.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04340", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf484-pf04340.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P23305", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04340" ], "protein_name": "Uncharacterized protein YigA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "27be98f5ed627b4dbc2aa4e08d7390fcee4dfdf024e641a98693ea85b1e6c3f8", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKQPGEELQETLTELDDRAVVDYLIKNPEFFIRNARAVEAIRVPHPVRGTVSLVEWHMARARNHIHVLEENMALLMEQAIANEGLFYRLLYLQRSLTAASSLDDMLMRFHRWARDLGLAGASLRLFPDRWRLGAPSNHTHLALSRQSFEPLRIQRLGQEQHYLGPLNGPELLVVLPEAKAVGSVAMSMLGSDADLGVVLFTSRDASHYQQGQGTQLLHEIALMLPELLERWIERV", "sequence_length": 235, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "27be98f5ed627b4dbc2aa4e08d7390fcee4dfdf024e641a98693ea85b1e6c3f8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P23305.json", "taxon_id": "83333", "uniprot_accession": "P23305", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf484-pf04340.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04340", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf484-pf04340.yaml" } ], "pfam_ids": [ "PF04340" ], "protein_name": "Uncharacterized protein YigA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKQPEEELQETLTELDDRAVVDYLRHHPEFFIRNAHAVEAMRVPHPVRGTVSLVEWHMARARNHINVLEENMTLLMEQAHANESLFYRLLHLQSRLVAADSLDEMLVRFHRWARDLGLAGATLRLFPDRWRLGAPSRYTHLALNRQAFEPLRIQRLGQSQHYLGPLNGPELLVVLPEAKAVGSVAMSMMGSDGGLGVILFSSRDPHHYQPGQGTQLLQEIALMLPELLERWIKRV", "sequence_length": 235, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "abca8c43478efd9495e28cfdad8965105d7972eaf02863e594a4bf1a53476dfd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P55886.json", "taxon_id": "99287", "uniprot_accession": "P55886", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf484-pf04340.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04340", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf484-pf04340.yaml" } ], "pfam_ids": [ "PF04340" ], "protein_name": "Uncharacterized protein YigA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKQPGEELQETLTELDDRAVVDYLIKNPEFFIRNARAVEAIRVPHPVRGTISLVEWHMARARNHIHVLEENMALLMEQAIANEGLFYRLLYLQRSLTAASSLDDMLMRFHRWARDLGLAGASLRLFPDRWRLGAPSNHTHLALSRQSFEPLRIQRLGQEQHYLGPLNGPELLVVLPEAKAVGSVAMSMLGSDADLGVVLFTSRDASHYQQGQGTQLLHEIALMLPELLERWIERV", "sequence_length": 235, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bce7cf0651f12a0428dc1ebdd771b4359f7db3037675af8dded878f197a1f8fc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q83IW8.json", "taxon_id": "623", "uniprot_accession": "Q83IW8", "uniprot_release": "2026_03" } ], "pfam_id": "PF04340", "short_name": "DUF484", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf485-pf04341.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04341", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf485-pf04341.yaml" } ], "pfam_ids": [ "PF04341" ], "protein_name": "Inner membrane protein YjcH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLIAFAPGWLGTPLNPNTSVTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQAS", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4dc4a700f7deb42733d17c236526e3d6ba6b91d5d50ce09355705378750b15fc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AF54.json", "taxon_id": "83333", "uniprot_accession": "P0AF54", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf485-pf04341.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04341", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf485-pf04341.yaml" } ], "pfam_ids": [ "PF04341" ], "protein_name": "Inner membrane protein YjcH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLIAFAPGWLGTPLNPNTSVTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQAS", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4dc4a700f7deb42733d17c236526e3d6ba6b91d5d50ce09355705378750b15fc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AF55.json", "taxon_id": "623", "uniprot_accession": "P0AF55", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf485-pf04341.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04341", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf485-pf04341.yaml" } ], "pfam_ids": [ "PF04341" ], "protein_name": "Uncharacterized protein YwcB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYKADYKQIAATPSFQAFLKQKRAFIVPSAIFFFVFYFSLPVLTSYFTFLNAPAIGAVSWAWLFAIAQFAMTWILSTVYSRRAAHFDKYVSALKEDLKGEQT", "sequence_length": 102, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3f1ff794905e30287951fda52d862c542582da54703579c90fc39ce5b3b5f81a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P39600.json", "taxon_id": "224308", "uniprot_accession": "P39600", "uniprot_release": "2026_03" } ], "pfam_id": "PF04341", "short_name": "DUF485", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04342", "short_name": "DMT_6", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04343", "short_name": "DUF488", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf489-pf04356.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf489-pf04356.yaml" } ], "pfam_ids": [ "PF04356" ], "protein_name": "High frequency lysogenization protein HflD homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDKFQDRTMAFAGICQAAYLVQKVARDGSCDEAALRESLSSILVTNPSQPLEVFNNTHLAIRDGYRALVEQLGADGSQKNAELTRYVVSLIALERKLAKRKDILNMLGERISQIGRQQQHFDLLDEQILANMASIYSDLISPIGPRIQVAGTPLFLQQPLVQHKVRALLLAGIRACVLWRQLGGSRTQIIFARKKMVELAKRY", "sequence_length": 204, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e917113024fb206dbc6fbc824455059ced93daded2cec1a57d33e5d2b969a148", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0KI52.json", "taxon_id": "380703", "uniprot_accession": "A0KI52", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shewanella sp. (strain ANA-3)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf489-pf04356.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf489-pf04356.yaml" } ], "pfam_ids": [ "PF04356" ], "protein_name": "High frequency lysogenization protein HflD homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNEQLHNRTMAFAGILQAIAQVQHLARHGESDTDELAASLNTILVTDPESAADVYQDKAALHKGYQLVLNQLGDSSQKDVEITRYLVGILALERKLTRSNSGLAMLAERINQVNRQLHHFAITDEQVIANLASIYSDIISNLGPKIQISGNPLCLQRPLVQHKIRALLLAAMRSAVLWRQLGGKRRHLVFARKAIIDTAKKSLTL", "sequence_length": 205, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "154100ffb994b8950e02d426699f283d3d02fcabee0e64953f4a455a782554b0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0KW10.json", "taxon_id": "94122", "uniprot_accession": "A0KW10", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/high-frequency-lysogenization-protein-hfld-nf001245.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF001245", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/high-frequency-lysogenization-protein-hfld-nf001245.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/high-frequency-lysogenization-protein-hfld-nf001246.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF001246", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/high-frequency-lysogenization-protein-hfld-nf001246.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/high-frequency-lysogenization-protein-hfld-nf001248.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF001248", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/high-frequency-lysogenization-protein-hfld-nf001248.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/high-frequency-lysogenization-protein-hfld-nf001249.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF001249", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/high-frequency-lysogenization-protein-hfld-nf001249.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf489-pf04356.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf489-pf04356.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/hfld-like-superfamily-ipr035932.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035932", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/hfld-like-superfamily-ipr035932.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/hfld-like-1-10-3890-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.3890.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/hfld-like-1-10-3890-10.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P25746", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04356" ], "protein_name": "High frequency lysogenization protein HflD", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e3dcbcaf79a410c472834e5a24cf418a89531c662ad1c6c389c8ddb3a7f53483", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSIIDMNPSSTLAVFGGSEANLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSAKGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRATLLAGIRAAVLWHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL", "sequence_length": 213, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e3dcbcaf79a410c472834e5a24cf418a89531c662ad1c6c389c8ddb3a7f53483", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P25746.json", "taxon_id": "83333", "uniprot_accession": "P25746", "uniprot_release": "2026_03" } ], "pfam_id": "PF04356", "short_name": "DUF489", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain SL1344)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tamb-n-pf27051.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27051", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tamb-n-pf27051.yaml" } ], "pfam_ids": [ "PF04357", "PF27051" ], "protein_name": "Translocation and assembly module subunit TamB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLWKKISLGVLIFIVVLLASVAFLVGTTTGLHLVFSAANRWVPGLEIGQVTGGWRDLSLKNIRYEQPGVAVNAGEIHLAIGLDCLWRSSLCVNDLALKDINVAIDSKKMPPSEPAQEEEESGPLNLSTPWPITLSRVALNNINIKIDDTTVSVLDFTSGLAWQEKNLTLKPTRLQGLLIALPKVADVAQEEVVEPKIEKPQPDEKPLGETLKDLFAKPVMPEMTDVHLPLNLNIESFRGEQLRITGDTDLTVRTMLLKVSSIDGNMKLDTLDIDANQGTVKASGTAQLANNWPVDITLNSTLNIDPLKGEKIKLKVGGALREQLEVGVNLSGPMDVALRAQTRLAEAGLPLNLEVVSQRIAWPLTGDTQFQADDLKLKLSGKMTDYTLSMRTAVKGQDIPPATITLDAKGNERQINLDKLTVAALEGKTELKALVDWQQAISWRGELTLNGINTAKEIPDWPAKLNGVMKTKGSLYGGTWQMDVPELKLTGNVKQNSVNVNGTLKGNSYMQWTIPGLHFALGPNSADIKGELGVKELNLDAAIDAPGLDNALPGLGGMAKGIVKVRGTVEAPQLLADITARGLRWQELSVAQARIEGDIKSTDQIAGHLNVRVERISQPDVNINLVTLDAKGSEKQHQLQLRVQGEPVSGQLSLTGSFDREAARWKGTLSDTRFQTPVGPWSLTRAIALDYRNKEQKISIGPHCWLNPNAELCIPQTIDAGAAGRAVVNLNRFDLAMLKPFMPDTTQASGIFSGKADVSWDTTQEGLPQGKVTLSGRNVKVTQTVNDAPLPVAFETLNLSADLHNNRAELGWLIRLTNNGQFDGQVQVTDPQGRRNLGGNVNMRNLNLAMVNPVFSRGEKAAGMLNARLRLGGDVQSPQLFGQLQLSALDIDGNFMPFEMQPSQLTMNFSGTRSTLAGIVRTQQGQINLNGNADWSQIDNWRARVTAKGSRVRITVPPMVRLDVSPDVVFDATPSLFTLDGRVDVPWARIVVHDLPESAVGVSSDVVMLNNDLQPETPQTASIPINSNLTVHVGNNVRIDAFGLKARLTGDLKVAQDKQGLGLNGQINIPDGRFRAYGQDLLVRKGELLFSGPPDQPLLNIEAIRNPDATEDDVIAGVRVTGTADEPKAEIFSDPAMPQAEALSYLLRGQGLDSNQSDSAAMTSMLIGLGVAQSGQVVGKIGETFGVSNLALDTQGVGDSSQVVVSGYVLPGLQVKYGVGIFDSLATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF", "sequence_length": 1259, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5776bb4826a8f69e066a1cd2ac0e4857c0051df99c69c91ca8308fccc7191a0a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E1WAU5.json", "taxon_id": "216597", "uniprot_accession": "E1WAU5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/chloroplast-intermembrane-space-go0031972.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031972", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/chloroplast-intermembrane-space-go0031972.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/translocation-and-assembly-module-tamb-c-terminal-domain-ipr007452.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007452", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/translocation-and-assembly-module-tamb-c-terminal-domain-ipr007452.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tamb-pf04357.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04357", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tamb-pf04357.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:F4ISL7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04357" ], "protein_name": "Protein TIC236, chloroplastic", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "5f9b3c42944caeb01f85ad7d28463cfa0157c7fb3cbce73d7dae934a44c4b319", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSLRLQNPFLSTPLLHGSFNRREKRINVARRAFRSKRIYSEKKQNDWLAKVAKFSQFCGKNVQLLRKSLDSRSRMEVKCLKEPFVRSKDLVRSLAPVWEEGLFFLRCSVFFAVISGVCLLVWYGQNKARVFVETKLLPSVCSVLSETIQREVDFGKVRRVSPLCITLEASSIGPHGEEFSCGEVPTMKVCVRPFASLRRGKIVVDAILSNPTVLVAQKKDFTWLGIPLSDTTLPSHLSSEEGIDFRTKTRRVSREEAGIRWDEERDNDARKAAEIGYIVPCKNYSQAKDNAVKHDRRFTEIANPNSFICMDEKMHSAEQHCMDPGVEYDVKHAELEKSFGIKIPGSGLKFLSKMLKVPRKYKFKWNSKSHKNSMSNISAKKRILERSASAALSYFHSLSQQKLDEPSVLSTNYDGLSLDMLLVKGDREISNQYDRHVPYGEQSLANDLDGKGYRVRGKRLLGVKKASTLDKFTVSCDPFLMTVDRLCALLQTKRSPSVEDIVNSSESETLSSQRGDISMNVVNQNTDDVPHGNRSGNQPRDFTFKKHEHQPVANHWRPSWPRNKKLKEAVFNILTGSSKKLTGRADPNAPHLSDELEKLPAVYVEKTLPVMLDSVQFKGGTLLLLAYGDTEPREMRNVHGHVKFQNHYGRVYVQLGGNCNMWRSDVTSEDGGLLSVDVFVDTVEQNWHANLNVANFFVPIFERILEIPIEWSKGRATGEVHLCMSRGESFPNLHGQLDVTGLGFHINDAPSSFSDVSASLSFRGQRIFLHNANGWFGKVPLEASGDFGIHPDEGEFHLMCQVPYVEINALMKTFKMKPLFFPLAGSVTAVFNCQGPLDAPVFVGSCMVSRKIAYLSPDLPTSLAYEAMLKNKEAGAVAAFDRVPFSYLSANFTFNTDNCVADLYGIRATLVDGGEIRGAGNAWICPEGEVDDTALDVNFSGNISFDKVLHRYMPEYFNIGMLKLGDLTGETKLSGALLKPRFDIKWAAPKADGSLTDARGDIVISHDNIIVNSSSVAFDLFTKLDTSYHDPCLSHQDFTQGEAMPFVVEGLDLDLRMRGFEFFSLVSSYPFDSPRPTHLKATGRIKFLGKIKRHSTTKDGDVGSDKCEDAAAISSLDGDISISSLKLNQLILAPQLSGRLSVSRDHVKLDAAGRPDESLTLDFIGPLQPNSDENVQSGKLLSFSLQKGQLRANACFQPQQSATLEIRNFPLDELELASLRGLIQKAEIQLNLQKRRGHGLLSVIRPKFSGVLGEALDVAVRWSGDVCFMLSGRLEVMITVEKTILEQSNSRYELQGEYVLPGSRDRDLGQKEAGSFLMRAMTGHLGSVISSMGRWRMRLEVPKAEVAEMLPLARLLSRSTDPAVHSRSKDLFIQSVQNLCLQAENLRDLLEEIRGYYTPPSEVVLEDLSLPGLAELKGHWHGSLDASGGGNGDTLAEFDFHGDDWEWGTYKTQRVLATGSYNNDDGLRLKEMLIQKGNATLHADGTLLGPKTNLHFAVLNFPVSLIPTLVEVVESSATDIVHSLRKLLSPIKGILHMEGDLRGSLEKPECDVQVRLLDGAVGGIDLGRAEVFASLTSNSRFLFNSNFEPFVQNGHVHIQGSVPVSFSQKNMSEGEVSETDRGGAVKIPSWAKEKEDDEKRTSRDRSEERWDSQLAESLKGLYWNILDAGEVRLEADIKDGGMTLLTAISPYANWLQGNADIRLQVGGTVDHPVLDGSASFHRASISSPVLRKPLTNFGGTLHVKSNRLCITSLESRVSRKGKLVVKGNLPLRSNEASAGDGIELKCEVLEVRAKNFLSCQVDTQLQITGSMLQPTISGNIKLSQGEAYLPHDKGGGAAPLNRLAANQYSIPGAAINQAVSSRYFARFFGTERASSGMKFSQSTGKSNSVEKEIEEVKMKPNMDIRLSDMKLVLGPELRIMYPLILNFAVSGELELDGMAHPKFIKPKGVLTFENGDVNLVATQVRLKREHLNVAKFEPEHGLDPLLDLALVGSEWQFRVQSRASNWQDKLVVTSTRSVEQDALSPSEAAKVFESQLAESILEGDGQLAFKKLATATLGTIMPRIEGKGEFGQARWRLVYAPQIPSLLSVDPTVDPLKSLASNISFGTEVEVQLGKRLQASVVRQMKDSEMAMQWTLIYQLTSRLRVLLQSAPSKRLLFEYSATSQD", "sequence_length": 2166, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "5f9b3c42944caeb01f85ad7d28463cfa0157c7fb3cbce73d7dae934a44c4b319", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4ISL7.json", "taxon_id": "3702", "uniprot_accession": "F4ISL7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/tam-protein-secretion-complex-go0097347.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097347", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/tam-protein-secretion-complex-go0097347.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-localization-to-outer-membrane-go0089705.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0089705", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-localization-to-outer-membrane-go0089705.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/autotransporter-assembly-complex-protein-tamb-nf047952.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF047952", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/autotransporter-assembly-complex-protein-tamb-nf047952.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/translocation-and-assembly-module-tamb-c-terminal-domain-ipr007452.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007452", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/translocation-and-assembly-module-tamb-c-terminal-domain-ipr007452.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tamb-n-pf27051.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27051", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tamb-n-pf27051.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tamb-pf04357.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04357", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tamb-pf04357.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P39321", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04357", "PF27051" ], "protein_name": "Translocation and assembly module subunit TamB", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0391b730cb3f98c3fef38b6a06bd10214865599dbc849c87e5f339577c012e1f", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSLWKKISLGVVIVILLLLGSVAFLVGTTSGLHLVFKAADRWVPGLDIGKVTGGWRDLTLSDVRYEQPGVAVKAGNLHLAVGLECLWNSSVCINDLALKDIQVNIDSKKMPPSEQVEEEEDSGPLDLSTPYPITLTRVALDNVNIKIDDTTVSVMDFTSGLNWQEKTLTLKPTSLKGLLIALPKVAEVAQEEVVEPKIENPQPDEKPLGETLKDLFSRPVLPEMTDVHLPLNLNIEEFKGEQLRVTGDTDITVSTMLLKVSSIDGNTKLDALDIDSSQGIVNASGTAQLSDNWPVDITLNSTLNVEPLKGEKVKLKMGGALREQLEIGVNLSGPVDMDLRAQTRLAEAGLPLNVEVNSKQLYWPFTGEKQYQADDLKLKLTGKMTDYTLSMRTAVKGQEIPPATITLDAKGNEQQVNLDKLTVAALEGKTELKALLDWQQAISWRGELTLNGINTAKEFPDWPSKLNGLIKTRGSLYGGTWQMDVPELKLTGNVKQNKVNVDGTLKGNSYMQWMIPGLHLELGPNSAEVKGELGVKDLNLDATINAPGLDNALPGLGGTAKGLVKVRGTVEAPQLLADITARGLRWQELSVAQVRVEGDIKSTDQIAGKLDVRVEQISQPDVNINLVTLNAKGSEKQHELQLRIQGEPVSGQLNLAGSFDRKEERWKGTLSNTRFQTPVGPWSLTRDIALDYRNKEQKISIGPHCWLNPNAELCVPQTIDAGAEGRAVVNLNRFDLAMLKPFMPETTQASGIFTGKADVAWDTTKEGLPQGSITLSGRNVQVTQTVNDAALPVAFQTLNLTAELRNNRAELGWTIRLTNNGQFDGQVQVTDPQGRRNLGGNVNIRNFNLAMINPIFTRGEKAAGMVSANLRLGGDVQSPQLFGQLQVTGVDIDGNFMPFDMQPSQLAVNFNGMRSTLAGTVRTQQGEIYLNGDADWSQIENWRARVTAKGSKVRITVPPMVRMDVSPDVVFEATPNLFTLDGRVDVPWARIVVHDLPESAVGVSSDVVMLNDNLQPEEPKTASIPINSNLIVHVGNNVRIDAFGLKARLTGDLNVVQDKQGLGLNGQINIPEGRFHAYGQDLIVRKGELLFSGPPDQPYLNIEAIRNPDATEDDVIAGVRVTGLADEPKAEIFSDPAMSQQAALSYLLRGQGLESDQSDSAAMTSMLIGLGVAQSGQIVGKIGETFGVSNLALDTQGVGDSSQVVVSGYVLPGLQVKYGVGIFDSIATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF", "sequence_length": 1259, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0391b730cb3f98c3fef38b6a06bd10214865599dbc849c87e5f339577c012e1f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P39321.json", "taxon_id": "83333", "uniprot_accession": "P39321", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tamb-n-pf27051.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27051", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tamb-n-pf27051.yaml" } ], "pfam_ids": [ "PF04357", "PF27051" ], "protein_name": "Translocation and assembly module subunit TamB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKALKITLLAIVGLLLALLLGLAALLGTQTGSAWLLGRVPGLQVSGFEGRLGGAWQAQRLSWAQDGTQLVVERPELRWSPACLAGLRLCLQRVAAERVALDLPPSGDSADSGPISLPTLKLPLSIELGEVAVGSFLLDGNQQVAELKLAAHWLADGLHIDSLTARGFGLDLALQGRLQPSGDWPLQAEATLGLPAPEGKPWKLAVQVGGELQQALTLKGRSSGYLDGSLEGQLQALAENLPARLLIRADGFKGAAGLPDTLTLNAIQLDASGDLKSGYLIRGGASLPGEGGAVALSLDGRVDAQGADIRQLRLDAGGEQRLELVGRLDWRESLAADATLDWKDFPWLRLYPLAEPPPVTLKTFKAEVHYQDQRYLGNFSAAASGPAGDFTLASPVSGDLVQLNLPSLQLRAGQGQAEGRVTLRFDNGVAWDTALQLSELNPAYWVAELPGSLAGPLRSQGSVRDERLALGVDLDVKGRLRGQPALFQARAEGEGQRWTLGNLDLRLGDNKVQGSGALDQRLQGRLDIALNRLGQLWPQLFGRLDGRLDLAGSLAAPQGRLNLKGQQIAYAEQRIAGLDLQANLDARQNGTLALVASGLRSGETDLGLFKANARGDQRRQQLELDLQGALLKLGLAFDGQLERGNWRGRLARGELSSGGQDWKLQQPARLERLADGRVNFGAHCWVSGAASLCGGEQRLLPEPRLRYTLRDFPLDSLKQWFPEDFAWQGKLNGDLQLDVPARGPSGVVSLDAGSGTLRLRDQGQWVDVGYDSLRLESRLAPNRVDTSLDFRGPKLGELRVQAQIDPRPASKPLSGEFSLAGLDLSLARPFVPMVEKLQGRLNGSGRLSGGLLAPRVDGRVTLSDGNIGGGELPTSFENLSLDARIAGESLELGGGWRSGRYGQGSLSGNLSWGDALNVALNIRGNRLPVVVDPYAQLEVEPDLKIGMAGQELAISGKVLVPRGDITIRQLPPSTVKVSDDAVIVGSEQPAQRPLKMKMDIDVEVGQDKLAFSGFGLSAELAGHLHIGDNLDTRGELNLNKGRYRAYGQRLTIRRARLFFAGPIDQPYLDIEAIRRVDDVVAGLRLTGSAEQPTSAVFSEPAMSQEQALSYLVLGRPMSTGEDSNMLGEAALALGLAGSAPLTGEIAKQLGIQDFQLDTEGTGNSTSVVASGNITDKLSLRYGVGVFEPANTIALRYQLTKRLYLEAASGLASSLDLFFKRDF", "sequence_length": 1221, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2e590473ab85bb5a3463e62ab429e2703644a385aab9d3db3ed629c3b6b1ee88", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9I0U2.json", "taxon_id": "208964", "uniprot_accession": "Q9I0U2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tamb-pf04357.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04357", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tamb-pf04357.yaml" } ], "pfam_ids": [ "PF04357" ], "protein_name": "Protein SUBSTANDARD STARCH GRAIN 4, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSHCLRASPFLSPPPPLLHPSRRRRHRQGGCIHTSPGTRPLVARARFDPPPLLRLKVSDSSDCPAPHHPHSQHQPLLPTRRQQQQPPPPYQALVASLAPLWREGLFLVRCSVFAAALSVAAALSWYAQLRARSFVESRLLPAACAALGEFLQREVHLGRVRSVSPLGITLHTCSIGPHAEEFSCAEVPVMKIRVRPFASLRRGRVVVDAVLSEPSALVAQRKDFSWLGLPAPSEGSPKRHSGEEGIDYRTKTRRLAREKAAEQWNEERDKAAREAAEMGYIVPSAQSISPSIDEMMEDDGPVDTGKSSPHLCPDEMHRKDHHIDAGIDSSSKHADLEKSFGVKARIPGISFWSRMIPNPSRRRYRRKAHSKLISDTDNSSQQRILRRSAYAAVAYFQNECSGNPDDSLPGPGESSSDGGHTNGGGEEGSPNDGPTEYSETTSMDYGELPPEKSNFASTMLIGNTDVLNGSSHNQQPSQISSHSWENNEQVSEAPVLKKRKNISEDDYRQEFDFGAFGSCTYAHNWLSFWPFQLKGFPVGFNAPSASLNVQIQKLRSLFAIGPGDNSAELSQGVGQIHPGAVQQTLPITLDSVYFNGGNLMLLGYGDQEPREMKHANGHIKFKNSYNRVHVHVTGNCMEWRQDRTSQGGGYLSTDVFVDIAEQTWHANLNVVNAFAPLFERILEIPVVWNKGRATGEVHLCMSKGDSFPSIHGQLDVKGLAFQILDAPSSFSDIVATLSFRGQRVFLHNASGWFGDAPVEASGDFGLNPEDGEFHLMCQVPSVEVNALMKTMKMRPLMFPLAGAVTAVFNCQGPLDAPVFVGSGIVSRKSLSVSGMLPSAASEAVMQNKESGAVAAFDHIPFTHVSANFTFNLDNCVADLYGIRACLLDGGEIRGAGNVWICPEGEGDDSAMDINLSGSILLDKVLHRYIPGGIQLIPLKIGELNGETRLSGSLIRPKFDIKWAAPNAEDSFSDARGNIVIAHDYIMVNSSSVSFDLNTHIQTSYIDDYLLHKEMYQRKKIMPLIVEGVDLDLRMRGFEFAHIASSIPFDSPRPLHLKASGRFKFQGKVVKYSQLVDEKNHGAIQGTIDQSKLENDVSRLVGEISLSGIKLNQLMLAPQSTGFLSISPDSIMLNATGRPDENFSIEVNVPLFFGTHEAIQDGRLLSIFLQKGQLRSNICYHPENLTSLEVRNLPLDELEFASLRGFVQKAELQLNFQKRRGHGLLSVIRPKFSGMLGESLDIAARWSGDVITMEKSVLEQANSKYELQGEYVFPGTRDRFPMESQSNGFIEKAMGGHLGSMMSSMGRWRMRLEVPGAEVAEMLPLARLLSRSTDPAIRSRSKELFMQTLHSVGFNAESLRDQLKALEMYPDWLDDDTIEDITLPGLAELRGYWRGSLDASGGGNGDTMADFDFNGEDWEWGTYKTQRVLASGSFSNNDGLRLDKLFIQKDNATLHADGSILGPLTNLHFAVLNFPVGLIPALVQAIESSTTDSIHFLRQWLTPIKGILHMEGDLRGTLAKPECDVQIRLLDGTIGGIDLGRAEVLASVTPTSRFVFDANFEPTIQSGHVNIQGSVPVTYVDSNSIEEDLEGGDGKQGIIRIPVWAKDRGLTNDISETRIMRDKPDEGWEFQLAESLKGLSWNMLEPGEVRINADIKDGGMTLITALSPYSNWLQGYAEVLLQVKGTVDHPVVDGSASFHRATVASPFLRTPLTNFAGNVHVISNRLCISSMESRVGRKGRLSMKGTLPLHNIEPSANDKIELKCEVLDIRAKNILSGQVDSQLQVTGSILRPDVSGMIRLSHGEAYLPHDKGNGAVATRLSSNKSISVPAGFDQRTVSRDVSHFLGSLSTSPDGQQSETERTPEHGSFKPNIDARLNDLKLTFGPELRIVYPLILNFAVSGDLELNGMVHPKYIRPKGVLTFENGEVNLVATQVRLKNDHLNVAKFEPDLGLDPILDLVLVGSEWQFKIQSRASMWQDNLVVTSTRSVDQDVLSPSEAAKVFESQLAESLLEGDGQLAFKKLATATLETLMPRIEGKGEFGQARWRLVYAPQIPSLLSVDPTVDPLKSLANNISFATEVEVQLGKRLQASVVRQMKDSEMAMQWSLIYQLTSRLRVLFQSTPSNRLLFEYSATSQG", "sequence_length": 2135, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "915bec15a1b31f39af4a0b8556df4f8f320edec9427ba51282b22f6d0b5e59c6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/W0RYD3.json", "taxon_id": "39947", "uniprot_accession": "W0RYD3", "uniprot_release": "2026_03" } ], "pfam_id": "PF04357", "short_name": "TamB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Ruthia magnifica subsp. Calyptogena magnifica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf493-pf04359.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04359", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf493-pf04359.yaml" } ], "pfam_ids": [ "PF04359" ], "protein_name": "UPF0250 protein Rmag_0541", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTINLTSETLFNFPCDYHIKVLGKDCEALQRTIYSIVERYTDKLHPNQITKKHSSKGNYMSFSIHIIASSRIQLDAINQDLQDCHLVSYVL", "sequence_length": 92, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c4b6ec102f807d4ffce496820353a3d626a3964cdf4974946cfeabb4eae95c31", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1AWI6.json", "taxon_id": "413404", "uniprot_accession": "A1AWI6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Ectopseudomonas mendocina (strain ymp)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf493-pf04359.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04359", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf493-pf04359.yaml" } ], "pfam_ids": [ "PF04359" ], "protein_name": "UPF0250 protein Pmen_3793", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDSDVQPPKIEFPCERYPIKVIGTAGEGFSDLVIEVIQRHAPDLDASTLVMRDSRNGNFLSVQVLITATSVEQLQAIHVDLRATGRVHMVL", "sequence_length": 92, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7fe236d10ebc62425fd6fb602c9795a3bfd023cc8b8c60fa0c64a9eae0327663", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4XYX5.json", "taxon_id": "399739", "uniprot_accession": "A4XYX5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/duf493-family-protein-ybed-nf003447.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF003447", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/duf493-family-protein-ybed-nf003447.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf493-pf04359.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04359", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf493-pf04359.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/ybed-like-domain-superfamily-ipr027471.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027471", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/ybed-like-domain-superfamily-ipr027471.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0A8J4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04359" ], "protein_name": "UPF0250 protein YbeD", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "25d324b6f4bdd517cee86a3820713ac758cc3e95a3cec64c651a1f1655027178", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKTKLNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMVL", "sequence_length": 87, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "25d324b6f4bdd517cee86a3820713ac758cc3e95a3cec64c651a1f1655027178", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A8J4.json", "taxon_id": "83333", "uniprot_accession": "P0A8J4", "uniprot_release": "2026_03" } ], "pfam_id": "PF04359", "short_name": "DUF493", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Yersinia pestis (strain Pestoides F)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf494-pf04361.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04361", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf494-pf04361.yaml" } ], "pfam_ids": [ "PF04361" ], "protein_name": "Protein Smg", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFDVLIYLFETYMHNEPEMLVDQDKITDDLADAGFYREDINNALNWLEVLADLQEGQKAPYLYTADPQALRIYTVEECRRLGAACRGFILFLEQIQVLQFDAREMVIDRIMALDSPEIDLEDLKWVVLMVLFNIPGYENAYKQMEELLFEVNDGYLH", "sequence_length": 157, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "48c99c416b175469980d584f90291044948ecc2e03f21d93dd4a6ccb882ac8e1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4TH25.json", "taxon_id": "386656", "uniprot_accession": "A4TH25", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Janthinobacterium sp. (strain Marseille)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf494-pf04361.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04361", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf494-pf04361.yaml" } ], "pfam_ids": [ "PF04361" ], "protein_name": "Protein Smg homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFDVLVYLYETYYRPDACPDSEALVKKLSAIGFEEEEIAKALGWLTALAETTNELSDSYPHQTAFSFGIRIYATQEMDVLGTPAVGFIQFLESAKLINPVQREIVIERALAAGESPISLEKLKVIVLMVLWSQGKEPDGLIFDELFVDDEDAPPRMLH", "sequence_length": 158, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7846aa537b65222ed4a481ba44602065fb7d8c264bf7752bec88384d92ad7762", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6SU83.json", "taxon_id": "375286", "uniprot_accession": "A6SU83", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/duf494-family-protein-nf002897.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF002897", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/duf494-family-protein-nf002897.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf494-pf04361.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04361", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf494-pf04361.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0A828", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04361" ], "protein_name": "Protein Smg", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "99f0b5b29ddce79eb88dd2bfc7a68828f4b75feb48546ee21b756e19ec4e9f46", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MFDVLMYLFETYIHTEAELRVDQDKLEQDLTDAGFEREDIYNALLWLEKLADYQEGLAEPMQLASDPLSMRIYTPEECERLDASCRGFLLFLEQIQVLNLETREMVIERVLALDNAEFELDDLKWVILMVLFNIPGCENAYQQMEELLFEVNEGMLH", "sequence_length": 157, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "99f0b5b29ddce79eb88dd2bfc7a68828f4b75feb48546ee21b756e19ec4e9f46", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A828.json", "taxon_id": "83333", "uniprot_accession": "P0A828", "uniprot_release": "2026_03" } ], "pfam_id": "PF04361", "short_name": "DUF494", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/iron-traffic-pf04362.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04362", "section": "canonical_examples", "url": 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"MKFLVLLFNILCLFPILGADELVMSPIPTTDVQPKVTFDINSEVSSGPLYLNPVEMAGVKYLQLQRQPGVQVHKVVEGDIVIWENEEMPLYTCAIVTQNEVPYMAYVELLEDPDLIFFLKEGDQWAPIPEDQYLARLQQLRQQIHTESFFSLNLSFQHENYKYEMVSSFQHSIKMVVFTPKNGHICKMVYDKNIRIFKALYNEYVTSVIGFFRGLKLLLLNIFVIDDRGMIGNKYFQLLDDKYAPISVQGYVATIPKLKDFAEPYHPIILDISDIDYVNFYLGDATYHDPGFKIVPKTPQCITKVVDGNEVIYESSNPSVECVYKVTYYDKKNESMLRLDLNHSPPSYTSYYAKREGVWVTSTYIDLEEKIEELQDHRSTELDVMFMSDKDLNVVPLTNGNLEYFMVTPKPHRDIIIVFDGSEVLWYYEGLENHLVCTWIYVTEGAPRLVHLRVKDRIPQNTDIYMVKFGEYWVRISKTQYTQEIKKLIKKSKKKLPSIEEEDSDKHGGPPKGPEPPTGPGHSSSESKEHEDSKESKEPKEHGSPKETKEGEVTKKPGPAKEHKPSKIPVYTKRPEFPKKSKSPKRPESPKSPKRPVSPQRPVSPKSPKRPESLDIPKSPKRPESPKSPKRPVSPQRPVSPRRPESPKSPKSPKSPKSPKVPFDPKFKEKLYDSYLDKAAKTKETVTLPPVLPTDESFTHTPIGEPTAEQPDDIEPIEESVFIKETGILTEEVKTEDIHSETGEPEEPKRPDSPTKHSPKPTGTHPSMPKKRRRSDGLALSTTDLESEAGRILRDPTGKIVTMKRSKSFDDLTTVREKEHMGAEIRKIVVDDDGTEADDEDTHPSKEKHLSTVRRRRPRPKKSSKSSKPRKPDSAFVPSIIFIFLVSLIVGIL", "sequence_length": 893, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d885634b114b522f2d73bae0de495dfbd9b5c6d39d7eb1c962ed7fe379a68719", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4U9M9.json", "taxon_id": "5874", "uniprot_accession": "Q4U9M9", "uniprot_release": "2026_03" } ], "pfam_id": "PF04385", "short_name": "FAINT", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/lps-assembly-lipoprotein-lpte-nf008062.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008062", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/lps-assembly-lipoprotein-lpte-nf008062.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/lpte-pf04390.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04390", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/lpte-pf04390.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/lipoprotein-like-domain-3-30-160-150.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.160.150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/lipoprotein-like-domain-3-30-160-150.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0ADC1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04390" ], "protein_name": "LPS-assembly lipoprotein LptE", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "42e1d7b4e85e3dadba41450904be5df5076a206ac3ebf64631f3bce1c008948d", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLPSIRAADIRSDEEQTSTTTDTPATPARVSTTLGN", "sequence_length": 193, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "42e1d7b4e85e3dadba41450904be5df5076a206ac3ebf64631f3bce1c008948d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADC1.json", "taxon_id": "83333", "uniprot_accession": "P0ADC1", "uniprot_release": "2026_03" } ], "pfam_id": "PF04390", "short_name": "LptE", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/tellurium-resistance-terb-like-protein-subgroup-3-this-family-includes-cd07178.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd07178", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/tellurium-resistance-terb-like-protein-subgroup-3-this-family-includes-cd07178.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf533-pf04391.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04391", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf533-pf04391.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/terb-like-ipr029024.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029024", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/terb-like-ipr029024.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/terb-like-1-10-3680-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.3680.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/terb-like-1-10-3680-10.yaml" } ], "pfam_ids": [ "PF04391" ], "protein_name": "Inner membrane protein YebE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANWLNQLQSLLGQSSSSTSSSADQGLVKLLVPGALGGLAGLLVANKSARKLLTKYGTNALLVGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERTARLILALVFAAKSDGHIDAKERAAIDQQLRGAGVEEQGRVLIEQAIEQPLDPQRLATGVRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLAE", "sequence_length": 219, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "25011e4769ab7f237c24d69cf055723e72f6e8f133321599e16116a348bcd61a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P33218.json", "taxon_id": "83333", "uniprot_accession": "P33218", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Yersinia enterocolitica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf533-pf04391.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04391", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf533-pf04391.yaml" } ], "pfam_ids": [ "PF04391" ], "protein_name": "Uncharacterized protein in ampR 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "IRQNHQDEPQYGQQVAPIDQRVQRLVMALVFAAKSDGHIERKMRSIIEQNMREAGISEQGERLVQQAIDQPLDPQLLARDIQNEEEALELYFLSCAVIDVDHFMERTYLAALGHALKIPQDVRDGIEQDIREKKQSITD", "sequence_length": 139, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2e4dc0a540832940076d1ecabcb3f0bd60213b5eb00edda6efa9857521ba71c8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P45462.json", "taxon_id": "630", "uniprot_accession": "P45462", "uniprot_release": "2026_03" } ], "pfam_id": "PF04391", "short_name": "DUF533", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Clostridioides difficile (strain R20291)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/abc-sub-bind-pf04392.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04392", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/abc-sub-bind-pf04392.yaml" } ], "pfam_ids": [ "PF04392" ], "protein_name": "Tyrosine-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIKSKKILSLIIAGVLGVSMLTGCSQNDGSNASNENKKTDSKKQKNIGISQLVEHPSLDKAKKGFIKALEDKGYKDGDNIKIDFQNAQNDMPTTQSIASKFVSDKKDLIYAISTPSAQAAYNATKDIPIIMTAVTDPVEAGLVKSLEKPGGNVSGTSDYLSIDKTLELVKTLTPKAKKIGVIYNTSEVNSKIQVDSLHDYAKKNNYEVVEKGISTSSEVNQAISSLVGKIDVLYVPTDNLIVSSMPIVSKVANENKIPIIASEEGSVSSGALACCGIDYEKLGYKAGELAIEVLEGKSVGDIPVTTLDETEIIINEDTLKALDMQKLSADNIKYIKSDENAKSAK", "sequence_length": 345, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6552160072529227c96a452eb35bb0ac6d0d4ebc11aa36f93cb52bc0fcbecf56", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DX45.json", "taxon_id": "645463", "uniprot_accession": "P0DX45", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/abc-sub-bind-pf04392.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04392", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/abc-sub-bind-pf04392.yaml" } ], "pfam_ids": [ "PF04392" ], "protein_name": "Uncharacterized protein RP367", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFISNIFQKFFSFLFVLLITTLVCADPKKVAVIVPLEHDSMYKIVSGIQEALKDIDVEILVKNAHADPNILLAIINQIKDHDIDLIIPIGTTVSQTTISHIINKPIVCAAAIINGKNLPLVTGVNDEIKITDTISKLPFLENITLIYSSSEKVIPEVEMLKLYAKNNNISLYTAMIQNLNDMPIAVKNAPKNTQSFIILKDHLIVSGINILKQEAFVRRIPLIASDEGSVINGATIAVGVQEKQIGVEAGLMAKKILQGIAPKDIPFSDMKDFTLFINLKSFLKQDILTQENLSVLPFKHKEF", "sequence_length": 303, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6e493d76bf7e8c925b4057c95e14f271a2d872d0cf3fea68ddbb6401c118df1f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZDG2.json", "taxon_id": "272947", "uniprot_accession": "Q9ZDG2", "uniprot_release": "2026_03" } ], "pfam_id": "PF04392", "short_name": "ABC_sub_bind", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mannheimia haemolytica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf535-pf04393.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04393", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf535-pf04393.yaml" } ], "pfam_ids": [ "PF04393" ], "protein_name": "Membrane protein LapB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNLYKWPAAQSLYPNQGKKSYAGKRFRYRLRSWLHHSKIKQFEQFVTQNPQLIPLLNARPNYSYPVAHRFLDKRFSAKQRLQKITDNLLFLPQKLAHLPPLWEQAVNFGEIIADFELWLNINEHQPMEGFWALELRHRPTNQLVYLLTFGKLDEALLIAVIQGPNFEGSKELVKQLTKSCHGLRPAYLMVETMKALTAVLGYQSLLGIPQKYQNKSAGCKVSAM", "sequence_length": 225, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7a35a6e4e42fa4dd65e9266477ba7095523dd186663aa038602bcc19ee9d0dbf", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P32181.json", "taxon_id": "75985", "uniprot_accession": "P32181", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf535-pf04393.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04393", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf535-pf04393.yaml" } ], "pfam_ids": [ "PF04393" ], "protein_name": "Uncharacterized protein YbjX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVKSTPCITIDFMNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRECMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG", "sequence_length": 330, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "35dbdd64af9dbe64dd3c24afd1dcc526cbc0102cae1c3071fa5f560b5e6d089d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75829.json", "taxon_id": "83333", "uniprot_accession": "P75829", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf535-pf04393.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04393", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf535-pf04393.yaml" } ], "pfam_ids": [ "PF04393" ], "protein_name": "Uncharacterized protein HI_1119", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIQMTTKTTYQWPQSKDIYPYRPGRFDAPKHWRYNLRSFLNRGSIRRFEQFINQHPFLIDIFNTHLDYSYPVACRFLDKRFNASQRFHAVCENLLFLPEKLTALSTPLWEKPLSFGEVIPDFEMTLSMTTHQPMEGYWVLELWHKPRNELVYLLTFAKLGDALLIAVVQGPNFEGSKEMVKQLTKLCHGLRPAYLMVETMKSLTKILGYNKLLGIPQKYQNKSRFIQSKQYTVDYDAIFGESGGELKDYWELPLEMDRNLDDIPSKKRSMYRKRYAMLDDLAKVIEEKLGL", "sequence_length": 292, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a90ac182c24809510fe2b114bf1c3924e8fc49adc4112b214741f16adea52b72", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57273.json", "taxon_id": "71421", "uniprot_accession": "Q57273", "uniprot_release": "2026_03" } ], "pfam_id": "PF04393", "short_name": "DUF535", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)", "origins": [ { "cited_uniprot_accession": "", "commit": 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"ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf536-pf04394.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04394", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf536-pf04394.yaml" } ], "pfam_ids": [ "PF04394", "PF13412" ], "protein_name": "Regulator of chromosome segregation", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSIEMTVSEIAEVLGLSRQAINNRVKELPEEDTDKNDKGVTVVTRSGLIKLEEIYKKTIFEDEPVSEDVKQRELMEILVDEKNAEILRLYEQLKAKDRQLSEKDEQMRIKDRQIAEKDKQLDQQQQLTLQAMKDQENLKLELDQAKEEVQSTKKGFFARLFGG", "sequence_length": 163, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9f80c0cf5ee60c989a837865c8ed76a0efbbc7c4a9585b9be4461bbd5ec76fdf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8DQ15.json", "taxon_id": "171101", "uniprot_accession": "Q8DQ15", "uniprot_release": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAYRDQPLGELALSIPRASALFRKYDMDYCCGGKQTLARAAARKELDVEVIEAELAKLAEQPIEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVERVHADKPSVPKGLTKYLTMLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEHDEAGELLEVIKHTTNNVTPPPEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALAGE", "sequence_length": 220, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "cf32754dea48318537573d664235235b2197e00cfa789dc589c36946c3283489", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P69506.json", "taxon_id": "83333", "uniprot_accession": "P69506", "uniprot_release": "2026_03" } ], "pfam_id": "PF04405", "short_name": "ScdA_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf531-pf04407.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04407", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf531-pf04407.yaml" } ], "pfam_ids": [ "PF04407" ], "protein_name": "Uncharacterized protein MJ0224", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"pfam_id": "PF04411", "short_name": "PDDEXK_7", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Agrobacterium fabrum (strain C58 / ATCC 33970)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acnx-2nd-pf28403.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28403", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acnx-2nd-pf28403.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acnx-3rd-pf28406.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28406", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acnx-3rd-pf28406.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acnx-pf04412.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04412", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acnx-pf04412.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acnx-swivel-put-pf01989.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01989", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acnx-swivel-put-pf01989.yaml" } ], "pfam_ids": [ "PF01989", "PF04412", "PF28403", "PF28406" ], "protein_name": "Cis-3-hydroxy-L-proline dehydratase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSAVSTTAAPEARSILAGAAEGKVIATTEALSFWGGVDPATGKVIDVHHPLHGICLTGGVLFMPTSRGSCTGSGVLLDLILTGRAPSALVFCEAEDVLTLGALVAAEMFDKALPVIRLDAETFSRFSRAAHVSIDQNTIKADGVSLAIAPPATAHLDLNDDDRAMLVGRDGIAVRQAMRIIVAMAAQQGASALVDVTQGHIDGCIYASPANLTFAEKMADMGGKVRAPSTMNAISVDKANWRAQGVPEDFGDPAARLADAYVRMGCKPTFTCSPYLLDSAPSAGESIAWAESNAVIFANTVLGARTAKHPDFLDLCIAMTGRAPLSGVYIEENRRPQRIVDVALPAGIDDAFWPLVGYLAGKAAPDCIPLLRGLGAAKPSRDDLKALCAAFGTTSASPMLHIEGATPEAGLAPLETAETVTISLQDMAAAWSLLNDGPEEVQLVAIGSPHASLEECRALAAVFAGRKRRADVAVIVTAGQQVIDAAGKDGTLQSLKDSGVQVLPDLCWCSISEPVFPTKTRALMTNSGKYAHYGPGLSGRAVRFGSLADCVESALTGRAVSRLPVWLS", "sequence_length": 569, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4a0d518808a49a8e08c868cda24b59592b2ff53797fdb1151456e6375014ace2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A9CH00.json", "taxon_id": "176299", "uniprot_accession": "A9CH00", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Trichoderma reesei (strain QM6a)", 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"data/traits/function/molecular_function/go/k11-linked-polyubiquitin-modification-dependent-protein-binding-go0071795.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071795", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/k11-linked-polyubiquitin-modification-dependent-protein-binding-go0071795.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/k6-linked-polyubiquitin-modification-dependent-protein-binding-go0071796.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071796", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/k6-linked-polyubiquitin-modification-dependent-protein-binding-go0071796.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mindy-deubiquitinase-domain-ipr033979.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mindy-deubiquitinase-domain-ipr033979.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mindy-dub-pf04424.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04424", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mindy-dub-pf04424.yaml" } ], "pfam_ids": [ "PF04424" ], "protein_name": "Ubiquitin carboxyl-terminal hydrolase MINDY-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENSPDSPQPLELGVAAGRVSPPEGRRRGGREAEDGPAGRAVDSGGQGAAAAAARSSLGDPTSPSQLGCGAGSDLKDGASSSPAASEVPSRGQHKVTASPELAEAAAGRGSGPVGDTGTCRVEQAAEEPSSTGAPSSSCSEPSPPGDSPSLDSLESFSNLHSFPSSSEFNSEEGAETRVPEDVEEGAAGPPRAAPLCKEEEEDPAQVLAASKERFPGQSVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLGDYMLEAKPKEISEIQRVNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSQLVSEGFVAEQFLNNTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKIVWESLHNVDGDGNFCDSEFHLRPPSDPETVYKGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQEQAQAVVTTTTPSTQAQQGQPAQASPSSIKQPGNSERKRKEPREKDKEKEKEKNSCVIL", "sequence_length": 601, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b6ff0d8cb18e93daa6b21d3b88f2da4b6485b6167f45b55dacc64dfed40d9cf7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PDI6.json", "taxon_id": "10090", "uniprot_accession": "Q6PDI6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mindy-dub-pf04424.yaml" } ], "pfam_ids": [ "PF04424" ], "protein_name": "Ubiquitin carboxyl-terminal hydrolase MINDY-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEQPQTENPAPSKATSAETVESENHEALSGPEKHPQDKDGADADGAAGEQEPGDQTLPPAQDGENLECPPPEASSSPPGPACGTSPKVETAEVCSRPQELPQSPRIQQPELDFYCVKWIPWKGERTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELLTHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSIFDLLGIPLYHGWLVDPQSPEAVSAVGKLSYNQLVEKIITCKHSSDSNLVTEGLVAEQFLETTAAQLTYHGLCELTAAATEDELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKSHGAEGGGGSPEKQLQVDQDYLIALSLQQQQQPQGTLGLSDLELAQQLQQEEYQQQQAVQPVRTRAPSPQGRGATSGRPAGERRQRSKTESDCVLL", "sequence_length": 468, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3fdc21da57b87761f23ef9a7207fcbbeed4f9503bdd4a6b7c7471ada347e3050", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q76LS9.json", "taxon_id": "10090", "uniprot_accession": "Q76LS9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mindy-deubiquitinase-domain-ipr033979.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mindy-deubiquitinase-domain-ipr033979.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", 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"ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mindy-dub-pf04424.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04424", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mindy-dub-pf04424.yaml" } ], "pfam_ids": [ "PF04424" ], "protein_name": "Ubiquitin carboxyl-terminal hydrolase MINDY-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"sequence_sha256": "e4020eeef8164f060aa0d41c84ccfda961d691eeb2c6a317dd0ad6a08bfb120f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O26338.json", "taxon_id": "187420", "uniprot_accession": "O26338", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf483-pf04467.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04467", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf483-pf04467.yaml" } ], "pfam_ids": [ "PF04467" ], "protein_name": "Uncharacterized protein AF_0426", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFFEFKKHFWKNPVLSLEISRILCNASSYVLPQGILKVEEGAFDAINRKFDDFMEGKAEVDELMAEADRLEEKLNEQLNRNFGYLHELGLEPHAKVAFVSRILSRGFVYPDVQIFVGKRACKKLRELSKVERRILEGRIELGKGREKLLRLEGKLLGYPDCCVGSYIESKRGFPAESRFIMECAEKGVFVKSLKALKSSKLISIPYLFTSNFYPCSIECSKAVKVGLKIQEWLDEFEDAFKLRSMLIALFYAATALRASKAAGNYGEKLRSFFSSLSPGDIGLIETLERHSGNQAEFTNLFIARILGGFSKG", "sequence_length": 312, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4ea5906a21ad9eea4ddeef5510c9dd6c3dbdb17396b67e68b7a1a27584d715e3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O29823.json", "taxon_id": "224325", "uniprot_accession": "O29823", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf483-pf04467.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04467", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf483-pf04467.yaml" } ], "pfam_ids": [ "PF04467" ], "protein_name": "Uncharacterized protein MJ1106", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKNLLYKIEKLRSGELEGFEVLKEHIQSLDEFQYQQIVERLKFQIELVEKYKPKVRPAIDPMVSTELGIYRRLDDFEIGKLLDYPECCIKSFVEDVRVAIDREHLKEVEEMKEELKNKGIYAIVLPSGFIPCSLKCEEAIKRGFIGYLTKEEFDKILELEKELKEKIRHWHFGYDEYYEKIILP", "sequence_length": 185, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2e7f7356c2f11467d551a6252f33820e82138943ac420dd4f250ca957daa3035", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58506.json", "taxon_id": "243232", "uniprot_accession": "Q58506", "uniprot_release": "2026_03" } ], "pfam_id": "PF04467", "short_name": "DUF483", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "O31728", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/division_machinery/divisome_complex.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990586", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/division_machinery/divisome_complex.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sepf-pf04472.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04472", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sepf-pf04472.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/sepf-like-superfamily-ipr038594.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038594", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/sepf-like-superfamily-ipr038594.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/sepf-like-protein-3-30-110-150.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.110.150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/sepf-like-protein-3-30-110-150.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O31728", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04472" ], "protein_name": "Cell division protein SepF", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "cf4223e56788a331c9903bad6bd0d463c74cea5071f59fdc8daab2c871bf43e6", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSMKNKLKNFFSMEDEEYEYEYIETERESHEEHEQKEKPAYNGNKPAGKQNVVSLQSVQKSSKVVLSEPRVYAEAQEIADHLKNRRAVVVNLQRIQHDQAKRIVDFLSGTVYAIGGDIQRIGSDIFLCTPDNVDVSGTISELISEDEHQRW", "sequence_length": 151, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "cf4223e56788a331c9903bad6bd0d463c74cea5071f59fdc8daab2c871bf43e6", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O31728.json", "taxon_id": "224308", "uniprot_accession": "O31728", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sepf-pf04472.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04472", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sepf-pf04472.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/sepf-like-superfamily-ipr038594.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038594", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/sepf-like-superfamily-ipr038594.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/sepf-like-protein-3-30-110-150.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.110.150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/sepf-like-protein-3-30-110-150.yaml" } ], "pfam_ids": [ "PF04472" ], "protein_name": "Uncharacterized protein MJ0919", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLEKLKKLLSKKGDNFSTPAPVSVDDYLEEIEEIPLTPVEEEKVIIKVCSIEDEKDAVNAIVMAEAGYIVIAKTPNLEKEIDDEFIEIIRKMRNEVAKFGGMLLALGDEHLLITPRNVVIEKLIKEKKEESNVTKENIEIKEEKEENSE", "sequence_length": 149, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5d3349f43817f8d769e467e803419920bda818f909cecfcfdd8532e8673751ea", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58329.json", "taxon_id": "243232", "uniprot_accession": "Q58329", "uniprot_release": "2026_03" } ], "pfam_id": "PF04472", "short_name": "SepF", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf553-pf04473.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf553-pf04473.yaml" } ], "pfam_ids": [ "PF04473" ], "protein_name": "UPF0252 protein PH0672", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKVSVIIFIVIMLGIGCLNLNESIKETCPRTSNITQAMSCYIPEDFEILKGVAEEIPGGTIEWKIWNILEWEEDHLSYDNNKGSDIILKPSEFIKVGEGVCTDYAVLTAGLLLASNISPVYLMIFHFMEDPTLHAAVAVNISGKLFILDQRLPPKNLDSYLIQFSKLEGKIILFAEMYKVEMKKGRVVVSGRKYLDLSNFGFYPGNISLDMLENLLLSEFQRRTNLFPRIDLKTVLPQGLKERKVWMIKFENFKLFYDDTFVEQYSNFIADEILKNEKIKSDISRYSAFWISIKLEGDDLIVRLFLGR", "sequence_length": 309, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "242d87c3a7287a323150d266cd9870e95f1c6369c49f097ea34c88679f141eca", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O58405.json", "taxon_id": "70601", "uniprot_accession": "O58405", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf553-pf04473.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf553-pf04473.yaml" } ], "pfam_ids": [ "PF04473" ], "protein_name": "UPF0252 protein PH1321", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQEYKELIKECAKELEGLMPEISQKLVNIAKINSPDRAFLEYLKVVEQVSLMKTERKQKNKALIILWRYGEALEKELYSDVKFFAKPLHKRIFRFVDWKIIGMLFLVFIILPAITSNLWSFRSEHYVLYLNENVDFPRELCNYRTSWLYDFRTSMVCVLKYGYGSINVTLRGNSWEKGVEAQRFISDMEYDFDRVKSPITYIQTPKETLRYKKGVCSDFALLVANILLDNNVSPVYIVHTVVRKEPSGGHAAAGIYVNGTLWILDWGSKPTKFQEYLENIDRIWEIREVRIYRITRDRITLERIYKARLEDDRWRFLYSVIIMLGIFILKRREWWIM", "sequence_length": 337, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c4797edb59f1fe2dc88065ef6e75fa8dd9bc577d412ffee655462e74e9dcfa3d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O59045.json", "taxon_id": "70601", "uniprot_accession": "O59045", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/s-layer-protein-outer-domain-ipr022651.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022651", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/s-layer-protein-outer-domain-ipr022651.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transglutaminase-like-domain-ipr007562.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007562", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transglutaminase-like-domain-ipr007562.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf553-pf04473.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf553-pf04473.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/s-layer-c-pf05124.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05124", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/s-layer-c-pf05124.yaml" } ], "pfam_ids": [ "PF04473", "PF05124" ], "protein_name": "UPF0252 protein MJ1282", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKIILIFFIFLILQNIYAYEKIYDVNHVCYYTLTSVELQKFVKTAEIITPLNADNKTTITKDTILVGNPEENPLTKKYIGFFKIKINKTFPGKNKGIIEKQIINGHTVILLAGSDIQGTYASIITFANLNDIPENPIICETSNKVNIYSTSLNSEYFRDFIEKNILTPKEIEKVKSLSYKLKGKDKKATIENIAKWVANNIKYDYDKCKKIESGKFSWDEYNTPSETVKTKKGVCLDYATLTSALLLNDNIIPYMLDVALYNTSSLKISSYHASVAVKIDNTYFVIDQQPYLIPINEYTAQTFEDNLRIASIVMFRVVKERDGIKLIKEKEVPGIAIYGDLINLLEMRFNN", "sequence_length": 352, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c03ed78a291aa757e561f841433d3bf6436a097c3682715358d5c739c49c6d28", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58678.json", "taxon_id": "243232", "uniprot_accession": "Q58678", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transglutaminase-like-domain-ipr007562.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007562", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transglutaminase-like-domain-ipr007562.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-10-620-30-3-10-620-30.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.620.30", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-10-620-30-3-10-620-30.yaml" } ], "pfam_ids": [ "PF04473" ], "protein_name": "UPF0252 protein MJECL39", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPILLEHIQLNDEDLKDTKHLAEILKYKNNSIKTIINVLEWEDSNIRYCYEKSNVYYFITFFIIVGLVWAIFPEVWLWCEQVFCISPTIHIIICCLYFIITIILFLFLCGVVGTFLHLWATFFTLSKCDSKILKLKEGLFTTLSLIWISTSLKTILKTKYAICRDYAKLTSAILHNLNIKHYFLVYPTHVAVAVKIDDYYYVIDQKLPIYKIDVWLKKLGKEKVKIYTPVDIYNSKLKFVEKYYKNENNLKSEISDDILRKIEEDVKKELQIKNAEQYNKKVEPIPVKLSIPIENYDEITHYSIVRVISKEIYNKFLTNIKNVSNIEIKKDEGKFAVNVYYEIPNSIPNSK", "sequence_length": 351, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "114b4b8fed98642c2e26b379b6d85119a2c734a9e5854e496ef11d87b8f92791", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q60294.json", "taxon_id": "243232", "uniprot_accession": "Q60294", "uniprot_release": "2026_03" } ], "pfam_id": "PF04473", "short_name": "DUF553", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf554-pf04474.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04474", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf554-pf04474.yaml" } ], "pfam_ids": [ "PF04474" ], "protein_name": "Uncharacterized membrane protein YdfK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFGTIFNTVMIIAGSIIGGIFKKGIKDEYQDILMQAMGFAAVALGINAITQHLPDSKYPILFIVSLAIGGLLGQIINLELRFNKLVNKFSKSNLAEGLSTAVLLFCIGSLSILGPVEAALHGDYTYLLTNGMLDGITSIVLASTFGFGIAAAALVLFSWQGSIYLFAQVMESAINTDLINEITIVGGILILSSGLSILGIKKFKTLNLLPSLLIPPVVIFVIHAFGLRF", "sequence_length": 229, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea7fd42532786c9c95e175ec0bbe72f3f7b5c78f517c841b738bfac9a31aea3c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P96689.json", "taxon_id": "224308", "uniprot_accession": "P96689", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf554-pf04474.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04474", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf554-pf04474.yaml" } ], "pfam_ids": [ "PF04474" ], "protein_name": "Uncharacterized protein YqgA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVIGPFINASAVLLGGVLGALLSQRLPERIRVSMTSIFGLASLGIGILLVVKCANLPAMVLATLLGALIGEICLLEKGVNTAVAKAQNLFRHSRKKPAHESFIQNYVAIIVLFCASGTGIFGAMNEGMTGDPSILIAKSFLDFFTAMIFACSLGIAVSVISIPLLIIQLTLAWAAALILPLTTPSMMADFSAVGGLLLLATGLRICGIKMFPVVNMLPALLLAMPLSAAWTAWFA", "sequence_length": 235, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d808fcb8ae6c6440f7dab733a9a1e1f693ef23296b587922ae5f8fedcd10a8f5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q46831.json", "taxon_id": "83333", "uniprot_accession": "Q46831", "uniprot_release": "2026_03" } ], "pfam_id": "PF04474", "short_name": "DUF554", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermococcus sibiricus (strain DSM 12597 / MM 739)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf555-pf04475.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04475", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf555-pf04475.yaml" } ], "pfam_ids": [ "PF04475" ], "protein_name": "UPF0212 protein TSIB_1358", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDYIVVLEAPIIVREVESADDAINVAVSKVAKALNKEKLDFVRVEIGYSQCPVCGSPFESAFVIGNVGLVGIYLTLKVFNAQSLEHAERIAKAVVGKALKKVPLKVFEIKEFHDGKEEGIELNNHKNEF", "sequence_length": 130, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a8fe13fe4919e4552875c7a43ca6ba1726d160e76479838f2ebaefdbb895d27d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C6A465.json", "taxon_id": "604354", "uniprot_accession": "C6A465", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf555-pf04475.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04475", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf555-pf04475.yaml" } ], "pfam_ids": [ "PF04475" ], "protein_name": "UPF0212 protein AF_0282", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPDYLVVLQAAWIVRKARSVEDAMNIAVAEAGKKLNPDLDFVKIDVGDTACPKCNSPLKAVFMVAGVALVGLIFEMKVFNAKSPEHAAKIAKYEIGKRMPRIPLEVIEVAEIE", "sequence_length": 113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8160b9fb3c8ae51a94bc507adda8f35175b2fa18f9a76591fae8ee4651693527", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O29959.json", "taxon_id": "224325", "uniprot_accession": "O29959", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf555-pf04475.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04475", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf555-pf04475.yaml" } ], "pfam_ids": [ "PF04475" ], "protein_name": "UPF0212 protein UNCMA_00570", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPNYKVVLEAAWIVKDAKSVDDAMSVAISEAGKRLNAAKMDFVEVEVGGTFCPFCGEPFDSVFVVAGTGIVGLLLEMKVFNAESKEHAERIARKGIGKALRDVPLKVVDITEAE", "sequence_length": 114, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7d677eb38576fe7900e0b12e7e7573b1209dc5f1656b2e38df2f0e759afb966a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0W081.json", "taxon_id": "351160", "uniprot_accession": "Q0W081", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf003035.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF003035", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf003035.yaml" } ], "pfam_ids": [ "PF04475" ], "protein_name": "UPF0212 protein MJ0068", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPNYHVTLQAAYIVRNVDDVEDAISVTISQIGKMLNKEGLNYVDIDIGLTICPKCGELVDCVLVVARTALVGVLLSMKVFNAESPEHAIRIAKATIGKVLKNIPLEPVDVVELEK", "sequence_length": 115, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a329edef87cd29ef9ea743b4035bdd10ddeef29fbd05bcd8015ab5260f932589", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q60372.json", "taxon_id": "243232", "uniprot_accession": "Q60372", "uniprot_release": "2026_03" } ], "pfam_id": "PF04475", "short_name": "DUF555", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/4hfcp-synth-pf04476.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04476", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/4hfcp-synth-pf04476.yaml" } ], "pfam_ids": [ "PF04476" ], "protein_name": "(5-formylfuran-3-yl)methyl phosphate synthase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MILLVSPKDVAEAYEAINGGADIIDVKNPPEGSLGANFPWVIKEIRSATPNGMLVSAAIGDVHYKPGTVTLAALGATISGADYIKIGLYGTRSYQEAVDVMKNVSNAVKSEDPKKIVVAAGYADAYRVGAVDPLIIPKIARDSGCDVAMLDTAVKDGKTLFDHLSIDLLKEFVEETHKYGMKCALAGSIKKEEIPMLKEIGCDIVGIRGAACTKGDRNEGKIQKDLVKEIVKICKE", "sequence_length": 236, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8283bcf5bd15bfe188254cfd0e79298262b5635c0b8804d0cd4de3b4c9f388df", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6USK6.json", "taxon_id": "406327", "uniprot_accession": "A6USK6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/carbon-carbon-lyase-activity-go0016830.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016830", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/carbon-carbon-lyase-activity-go0016830.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/methanofuran-biosynthetic-process-go2001120.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2001120", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/methanofuran-biosynthetic-process-go2001120.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/5-formylfuran-3-yl-methyl-phosphate-synthase-nf002573.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF002573", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/5-formylfuran-3-yl-methyl-phosphate-synthase-nf002573.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/5-formylfuran-3-yl-methyl-phosphate-synthase-nf002575.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF002575", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/5-formylfuran-3-yl-methyl-phosphate-synthase-nf002575.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/class-i-aldolases-class-i-aldolases-the-class-i-aldolases-use-an-activ-cd00945.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd00945", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/class-i-aldolases-class-i-aldolases-the-class-i-aldolases-use-an-activ-cd00945.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/4hfcp-synth-pf04476.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04476", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/4hfcp-synth-pf04476.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q58499", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04476" ], "protein_name": "(5-formylfuran-3-yl)methyl phosphate synthase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e45617d792114b99945c60929eeafed739c337dc950e65263b7a7933aeb17b5c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MILLVSPIDVEEAKEAIAGGADIIDVKNPKEGSLGANFPWMIKAIREVTPKDLLVSATVGDVPYKPGTISLAAVGAAISGADYIKVGLYGVKNYYQAVELMKNVVRAVKDIDENKIVVAAGYADAYRVGAVEPLIVPKIARDAGCDVAMLDTAIKDGKTLFDFQSKEILAEFVDEAHSYGLKCALAGSIKKEHIPILKEIGTDIVGVRGAACKGGDRNNGRIDRELVKELKELCK", "sequence_length": 235, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e45617d792114b99945c60929eeafed739c337dc950e65263b7a7933aeb17b5c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58499.json", "taxon_id": "243232", "uniprot_accession": "Q58499", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methylorubrum extorquens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": 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"408", "uniprot_accession": "Q8GEK8", "uniprot_release": "2026_03" } ], "pfam_id": "PF04476", "short_name": "4HFCP_synth", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus parainfluenzae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf559-pf04480.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf559-pf04480.yaml" } ], "pfam_ids": [ "PF03852", "PF04480" ], "protein_name": "Type II nicking enzyme 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"canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf559-ipr007569.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007569", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf559-ipr007569.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/putative-endonuclease-duf559-bacteria-ipr047216.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR047216", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/putative-endonuclease-duf559-bacteria-ipr047216.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf559-pf04480.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf559-pf04480.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/vsr-endonuclease-3-40-960-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.960.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/vsr-endonuclease-3-40-960-10.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P45736", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04480" ], "protein_name": "Uncharacterized protein YcjD", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "aaeb20dbbaef010d43014f1ec40d0bdf08e7dcbd1d7fef09429c36f7e25f3b35", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MIDKIKSNARDLRRNLTLQERKLWRYLRSRRFSDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDSRRTSWLESQGWTVLRFWNNEIDCNEETVLENILQELNRRSPSP", "sequence_length": 117, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "aaeb20dbbaef010d43014f1ec40d0bdf08e7dcbd1d7fef09429c36f7e25f3b35", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P45736.json", "taxon_id": "83333", "uniprot_accession": "P45736", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Neisseria meningitidis serogroup C", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf559-pf04480.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf559-pf04480.yaml" } ], "pfam_ids": [ "PF03852", "PF04480" ], "protein_name": "Type II nicking enzyme V.NmeDIP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDRLTPEQRKKCMQSNKSKGTKPELALAKAMWALGLRYRKNSGSIFGKPDFSFKKYKVAVFVDGEFWHGKDWEQRKAEIKGNREFWIAKIERNIRRDMEVTGRLKVEGWAVLRFWSNDVVKNTTCCAEKVRQAVRDKQGLSKFQTREK", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2d44c9f99eca8f013a91ef40c135cd0bde61ffb4d390463a4d29672dc8aa3b0c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RLM5.json", "taxon_id": "135720", "uniprot_accession": "Q9RLM5", "uniprot_release": "2026_03" } ], "pfam_id": "PF04480", "short_name": "DUF559", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cyanidium caldarium", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf561-pf04481.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04481", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf561-pf04481.yaml" } ], "pfam_ids": [ "PF04481" ], "protein_name": "Uncharacterized protein ycf23", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVNKSQVLLDIANKKAIKVISGLTNLNYEHVLTIARASQRACVSYIDIAADPQLVKVVKANVNIPICVSGLEIQPIYNAVLAGADLIEVGNYESLYKRNTVLSVCKIITLVEEIKKLCPRVPLTVTIPYILNQKDQINLCKQLESLRVDYIQTEGNSISKCKNHCVQDLLRLSLQTLACTYELVKHTQLPIICSSGLSDVTVPLAFSLGASGIGIGKFVTSYYEEEKIVSILSKIKKIVSGTRSYQACE", "sequence_length": 249, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "996d2ab1c334ee5034f36330f6d45277b5647570b3d8d71d6af7cecdb2432fbd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O19904.json", "taxon_id": "2771", "uniprot_accession": "O19904", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cyanophora paradoxa", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf561-pf04481.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04481", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf561-pf04481.yaml" } ], "pfam_ids": [ "PF04481" ], "protein_name": "Uncharacterized protein ycf23", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNKIDNFLKQKKLIKVISGLNNFNTTHVIKIAKAASKTNASFIDIAAAPKLVEKVKKEVPNLPICVSAIKPELFVPCVKAGAELIEIGNFDSLYNQGYKINFSDVLSLVKQTRSLLPDTPLSVTIPYLLPLNLQLELAYRLEDLNVDLIQTEGKINKITSLLDNRNIETILPTLASTYLIANNVTIPVICASGLTISTIELPFKLNASGIGIGNAVSKLNSTEEMINLLNEISTRINYSTVL", "sequence_length": 243, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f2c395387246b16738da007dcd2923799c0c6da01011da11b62dec45fbc3123", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P31605.json", "taxon_id": "2762", "uniprot_accession": "P31605", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porphyra purpurea", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf561-pf04481.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04481", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf561-pf04481.yaml" } ], "pfam_ids": [ "PF04481" ], "protein_name": "Uncharacterized protein ycf23", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTISSKISSDFDKQSALKVITGLNNFNIPQIKQMALASEIAKVTYLDIVADTDIIKEVESVSKIPICVSAVKSKELLKCQKTGVNILEIGNYDCFYEQGRLFHSEEIKLISKETRNLLPHATLCVTLPHILKIEEQVKLASDLQRIGIDMIQTEGKSTSISKTDHLSGMIQKSASTFSSTYTVSSKIRLPIISASGISSLTSPIAFLYGASGIGIGSNIRRLQDIGSMVIYIYEVQAAISSNHNIQQNINHSIQSSKISHQLIPY", "sequence_length": 265, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "22078b09c0a4e526f9a307b110586c5e06be07d0da7cad698fdf3b8777c25bcb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P51373.json", "taxon_id": "2787", "uniprot_accession": "P51373", "uniprot_release": "2026_03" } ], "pfam_id": "PF04481", "short_name": "DUF561", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf565-pf04483.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04483", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf565-pf04483.yaml" } ], "pfam_ids": [ "PF04483" ], "protein_name": "Ycf20-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MACQIQASRVFPVLEIEKGLSFMINVFHRRIKASSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS", "sequence_length": 197, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7b1b6fdd782e0fe9732b7bd57252228a24c2f1683edbb9ffc3b01378b98f0e84", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O80813.json", "taxon_id": "3702", "uniprot_accession": "O80813", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Galdieria sulphuraria", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf565-pf04483.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04483", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf565-pf04483.yaml" } ], "pfam_ids": [ "PF04483" ], "protein_name": "Uncharacterized protein ycf20", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQLIIINTLLGIFSSNLLCTIYTQTGDWSLYLTSCIIALYEIISYISYNQFIKKTHKNIINCFNGFKIGLIYGLYLDAFKLGS", "sequence_length": 83, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fd29d458fb59dbae31663975f692dc53f5ad7626914ba571c037ae1f2c03924a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P48409.json", "taxon_id": "130081", "uniprot_accession": "P48409", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porphyra purpurea", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf565-pf04483.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04483", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf565-pf04483.yaml" } ], "pfam_ids": [ "PF04483" ], "protein_name": "Uncharacterized protein ycf20", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIRTKLSIFFSYFVQNLSSRLYYSLNELTAGLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVRINLLNNLKIGITYGLFVDAFKLGS", "sequence_length": 108, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fc8938faef2f697fc9b5bff92f3b78d82ec9a64a1a9a9adad5107db3f7e946a9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P51214.json", "taxon_id": "2787", "uniprot_accession": "P51214", "uniprot_release": "2026_03" } ], "pfam_id": "PF04483", "short_name": "DUF565", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/qwrf-pf04484.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04484", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/qwrf-pf04484.yaml" } ], "pfam_ids": [ "PF04484" ], "protein_name": "QWRF motif-containing protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQVGSKKASMGKQQQSVSDATSPRPPLAPSEKNNVGSVTRRARTMEVSSRYRSPTPTKTRRCPSPIVTRTAPSSSPESFLKRAVSAERNRGPSTPTTPVSDVLVDLPVSSRRLSTGRLPESLWPSTMRSLSVSFQSDSVSVPVSKKEKPLVTSSTDRTLRPSSSNIAHKQQSETTSVTRKQTPERKRSPLKGKNVSPGQSENSKPMDGSHSMLIPPQHRWSGRIRGNRSFDLGDKAVRRVSLPLSNKSSRHKKSSSDITRLFSCYDNGRLEVSSSTTSEDSSSTESLKHFSTSSLPRLHPMSAPGSRTASPSRSSFSSSSSSNSRGMSPSRGVSPMRGLSPVGNRSLVRSSTPPSRGVSPSRIRQTAQSSSTNTSVLSFIADVKKGKKATYIEDVHQLRLLYNRYSQWRFANARAEGVSYVQSLIAKETLYNVWHAISDLRDLVTTQRICLQQLKLEIKLRSILNDQMVCLEDWAMVEREHISSLAGAIGDLEANTLRLPLAGGTKADLGSLKLAMSSALDVMQSMGSSIWSLHSQMEEMNKLVSDLAVIAKTENFLLDKCENLLASTAVMEIEERSLKTHLIQKKQEEEVRDDAESSPLLPLSKFQWP", "sequence_length": 609, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "de2818fe76ec1de00230a1ae0fc403faea175de7897aae719f4f745c021ef67d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4INP9.json", "taxon_id": "3702", "uniprot_accession": "F4INP9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/nuclear-microtubule-go0005880.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0005880", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/nuclear-microtubule-go0005880.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/endosperm-cellularization-go0010342.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010342", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/endosperm-cellularization-go0010342.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/qwrf-pf04484.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04484", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/qwrf-pf04484.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O80588", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04484" ], "protein_name": "Protein ENDOSPERM DEFECTIVE 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "bfceec04bf0d0927b32bcdfcc15a11cb12df125d526a42a56f4879ee7cdd8998", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEARIGRSMEHPSTPAINAPAPVPPPSTRRPRVREVSSRFMSPISSSSSSSSSSSAGDLHQLTSNSPRHHHQHQNQRSTSAQRMRRQLKMQEGDENRPSETARSLDSPFPLQQVDGGKNPKQHIRSKPLKENGHRLDTPTTAMLPPPSRSRLNQQRLLTASAATRLLRSSGISLSSSTDGEEDNNNREIFKSNGPDLLPTIRTQAKAFNTPTASPLSRSLSSDDASMFRDVRASLSLKNGVGLSLPPVAPNSKIQADTKKQKKALGQQADVHSLKLLHNRYLQWRFANANAEVKTQSQKAQAERMFYSLGLKMSELSDSVQRKRIELQHLQRVKAVTEIVESQTPSLEQWAVLEDEFSTSLLETTEALLNASLRLPLDSKIKVETKELAEALVVASKSMEGIVQNIGNLVPKTQEMETLMSELARVSGIEKASVEDCRVALLKTHSSQMEECYLRSQLIQHQKKCHQQECTTSV", "sequence_length": 474, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "bfceec04bf0d0927b32bcdfcc15a11cb12df125d526a42a56f4879ee7cdd8998", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O80588.json", "taxon_id": "3702", "uniprot_accession": "O80588", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/qwrf-pf04484.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04484", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/qwrf-pf04484.yaml" } ], "pfam_ids": [ "PF04484" ], "protein_name": "QWRF motif-containing protein 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATTGRRLRPPSPNNNRSRTISSSISLPVSLNASLSSSTSSSSSSSPSNSSKRVMITRSQSTTRSSRPIGSSDSKSGENIIPARNSASRSQEINNGRSRESFARYLEQRTRGSPRSNASSRGVKPGASSPSAWALSPGRLSTMKTPLSSSAPTTSMCMTPPESPVSKAKIRSGGGGAVAGVLKYFMAQKKVSPVQEEDYHRFRIFQNRLLQWRFVNARTEATMANLKINVEDQLFWVWLRIYKMRNYVVENLIEIQRLRQDIKVREVLSLQMPLLNEWSKIDAKNSEALSKLTRKLHALSVRLPLVHGATIDMVSIHEEMVIAIEVMDEIEDVIIKFLPRVEIILYELTELIGMFNQELLYFEEMDESLLSIPLFTAKESSLRVHILQKTEEQR", "sequence_length": 394, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d47b9a2fac87af9b93ef9076ac8fe40adb69d6a22b1533981f26ce2f6863fdab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1PE51.json", "taxon_id": "3702", "uniprot_accession": "Q1PE51", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/qwrf-pf04484.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04484", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/qwrf-pf04484.yaml" } ], "pfam_ids": [ "PF04484" ], "protein_name": "QWRF motif-containing protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAKTSGPKQIQPSTPAPPPSTRRPRVREVSSRFMSPVTSSSSSAGDLHSLTCNSPKQHHLQHHQIQRSVSAQRLRRQLKMADGDENRSSETAARSLDSPFTLSQSRKSSKPSHLKPLNENSHRLETPTPMVPPPPSRSRLSQQRLPTATRLLQLSGISACYEKEGIINIQEKPKSNGSDQFPTLSCRTHLKVFNNPVPSSLNRSVSSPSSSCNVRESSSFSRLGLPLPPMAPKVPADTKKQRKVTEQLEDVHSLKLLHNRYLQWRFANANAQVKTQTHKTQTETMIHSFGSKISELHDSVQRKRIELQRLLKTKALLAITESQTPCLEQWSAIEEEYSTSVSQTIQAFSNASLRLPLDGDIMVDSKQLGDGLVAASKIVDGITQNVGNYMPKAKEMESLLSELTRVARSERSLTENCVVALLKTQASQVLNLSLHKLKNVL", "sequence_length": 442, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "432a977342f5e7723be2d88ddbea2e3755b63faf44782cb8146b1e597709f249", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5BPM6.json", "taxon_id": "3702", "uniprot_accession": "Q5BPM6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/qwrf-pf04484.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04484", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/qwrf-pf04484.yaml" } ], "pfam_ids": [ "PF04484" ], "protein_name": "Protein SNOWY COTYLEDON 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVAAIPQGAAISNTDSKNPPPRDRQDKPQLTANNGGLQRRPRAAKNVPSRYLSPSPSHSTTTTTTTATSTSTSSSSSVILRSSKRYPSPLLSRTTNSASNLVYTPSSLPKRSQSVDRRRPSAVSDTRTEMSAATKMLITSTRSLSVSFQGEAFSFPISKKKETATPVSHRKCTPERRRATPVRDQRENSKPVDQQLWPGASRRGSSESVVPNSLSRSVDSDSDDGRKLGSGFVGRSMLQHSQSSRVSGDGRLNLGFVGGDGMLEMRDENKARQSTHPRLASSVSCDFTASDTDSVSSGSTNGAHECGSGEVSKTRSLPRNGMASTKFWQETNSRLRRMQDPGSPQCSSPSSRISSISSKFSQSKRFSSDSPLTSSPRGMTSPIRGATRPASPSKLWATATSAPARTSSSPSRVRNGVSEQMNAYNRTLPSILCFSADIRRGKIGEDRVMDAHLLRLLYNRDLQWRFANARADSTLMVQRLSAEKILWNAWVSISELRHSVTLKRIKLLLMRQKLKLASILKEQMCYLEEWSLLDRNHSNSLSGATEALKASTLRLPVSGKAVVDIQDLKHAVSSAVDVMHAMVSSIFSLTSKVEEMNSVMAEMVNITGKEEVLLEQCQGFLTRVAAMQVTDCSMKTHIIQLSRL", "sequence_length": 644, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ef78f3f3ee7187c8c7bde5af7f1a7c42999d4b59b8e0d2c16cab6dd2f923d989", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8GXD9.json", "taxon_id": "3702", "uniprot_accession": "Q8GXD9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/qwrf-pf04484.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04484", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/qwrf-pf04484.yaml" } ], "pfam_ids": [ "PF04484" ], "protein_name": "QWRF motif-containing protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSCEHELLKTRRGKSREVSSRFLSSPSASSSPNRRNSTSNSSRDDQNNNGVKGHLGLKKHDRMSDGTRVCFGLPNQSSIEVDTKENRMPSPWINDEDNVILPGRFSVDECALYRASSRRNSCSLLYESFNDETDSELSDVSCASSLSTNRSSWNHKPGIKVSSKYLHDLTAKPSKGNNKTKLRSQDDSQRTNSSKGIENRLQRNNSVSRYGSSMSQWALSPGRSLDTQAVTVPSSKLKPPRGKGVGKLINLGFDFFRSKNKSSPFTSPLKPKTCDTESAHQLKLMNNRLLQWRFVNARACDVNKNVASQEKNQLLCAWDTLIKLNNLVLQERIKLQKKNLEMKLNYVFLSQVKHLEAWEDMEIQHLSSLSIIRDSLHSVLSRLPLKEGAKVNLESAVSIIKNAEAVTDAIISTVDDYAPTMEGIVPLASQLAEVVVQEKLMLEKCHDLLRMISELEMQERSLKCCFLIQHKQTFDTNLLKH", "sequence_length": 482, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9ff1c04037d8291164605fe53e107f5d60dd67fbb8927fc31abb8173888fead5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8S8I1.json", "taxon_id": "3702", "uniprot_accession": "Q8S8I1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/qwrf-pf04484.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04484", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/qwrf-pf04484.yaml" } ], "pfam_ids": [ "PF04484" ], "protein_name": "QWRF motif-containing protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVAAAISTTDPRNPPRDRPQSLTNNGGQRRPRGKQVPSRYLSPSPSHSVSSTTTTTTTTTTTTSSSSSSSSSAILRTSKRYPSPSPLLSRSTTNSASNSIKTPSLLPKRSQSVDRRRPSAVSVTVGTEMSAATKMLITSTRSLSVSFQGEAFSLPISKKKETTSTPVSHRKSTPERRRSTPVRDQRENSKPVDQQRWPGASRRGNSESVVPNSLSRSLDCGSDRGKLGSGFVGRSMLHNSMIDESPRVSVNGRLSLDLGGRDEYLDIGDDIQRRPNNGLTSSVSCDFTASDTDSVSSGSTNGVQECGSGVNGEISKSKSLPRNIMASARFWQETNSRLRRLQDPGSPLSSSPGLKTSSISSKFGLSKRFSSDAVPLSSPRGMASPVRGSAIRSASPSKLWATTTSSPARALSSPSRARNGVSDQMNAYNRNNTPSILSFSADIRRGKIGEDRVMDAHLLRLLYNRDLQWRFVNARADSTVMVQRLNAEKNLWNAWVSISELRHSVTLKRIKLLLLRQKLKLASILRGQMGFLEEWSLLDRDHSSSLSGATESLKASTLRLPIVGKTVVDIQDLKHAVSSAVDVMQAMSSSIFSLTSKVDEMNSVMVETVNVTAKEKVLLERCQGCLSRVAAMQVTDCSMKTHIIQLSRIPITSSLTPQL", "sequence_length": 659, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9e02371979b993280f17ba5b4d96f7e73f71de8c61f8e826caa411c8589256da", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q94AI1.json", "taxon_id": "3702", "uniprot_accession": "Q94AI1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/qwrf-pf04484.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04484", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/qwrf-pf04484.yaml" } ], "pfam_ids": [ "PF04484" ], "protein_name": "AUGMIN subunit 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVATDTTRRRLLPSDKNNAVVATRRPRTMEVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQSVAAKRAVSAERKRPSTPPSPTSPSTPIRDLSIDLPASSRRLSTGRLPESLWPSTMRSLSVSFQSDSVSVPVSKKERPVSSSSGDRTLRPSSNIAQKHKAETTSVSRKPTPERKRSPLKGKNNVSDLSENSKPVDGPHSRLIEQHRWPSRIGGKITSNSLNRSLDLGDKASRGIPTSGPGMGPSLRRMSLPLSSSSRPLHKTSSNTSSYGGLVSPTKSEDNNIARTSGAQRLLSAGSLDRATLATAVARLHPLPAPGSRPASPSRTSFLSSSSISRGMSTSRGVSPSRGLSPSRGLSPTRGLSPSRGLSPSRGTNTSCFARPSTPPSRGISPSRIRQTTTSTQSSTTTSVLSFITDVKKGKKASYIEDVHQLRLLHNRYLQWRFAIARAESVMYIQRLTSEETLFNVWHAISELQDHVTRQRIGLQQLKLEIKLNSLLNDQMVSLEDWATLERDHVSSLVGAISDLEANTLRLPATGGTKADTESLKAAMSSALDVMQAMGSSIWSLLSKVEEMNIMVTELAVVVTKESSMQGKCEDLLASTAIMQIEECSLRTHLIQTRREEGEDAETPPPLLPLSKFPWP", "sequence_length": 644, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b012d2c21262f3da2921cce692c1a202196ac483f3461cc12292c4632c4610ff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SUH5.json", "taxon_id": "3702", "uniprot_accession": "Q9SUH5", "uniprot_release": "2026_03" } ], "pfam_id": "PF04484", "short_name": "QWRF", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human cytomegalovirus (strain AD169)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf570-pf04489.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04489", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf570-pf04489.yaml" } ], "pfam_ids": [ "PF04489" ], "protein_name": "Protein UL31", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDKPTLVTLLTVAVSSPPPSSPLPLVSFTELLLPPPSVAAAAVAATATSEVGEKTAEQEVAAADPETGNERRENRENEGGETRTTGTTAVKRSHDGIPRQLAERLRLCRHMDPEQDYRLPAQDVVTSWIEALRDADRDNYGRCVRHAKIHRSASHLTAYESYLVSITEQYNTASNVTEKASYVQGCIFLSFPVIYNNTQGCGYKYDWSNVVTPKAAYAELFFLLCSTSESSVVLQPLITKGGLCSSMAVYDEETMRQSQAVQIGFLHTQLVMVPFVPHACPHYAVPFTTPGKPGCGGAPSGVAGLEEAAPFGRVSVTRHGATLLCRVDHLTWISKRVTTYGHKKITRYLAQFRGTMDDDEAALPGEDEAWIASKNVQYEFMGLIFTVNVDSLCVDAEQRQLLGTVATSFCHRVSDKITARNMPRAFSFYLLTSAQRGYDLRFSRNPSLFFSGDALNCPLLNEPNVFSLTVHAPYDIHFGVQPRQTVELDLRYVQITDRCFLVANLPHEDAFYTGLSVWRGGEPLKVTLWTRTRSIVIPQGTPIATLYQITEGDGNVYSYNHHTVFRQMHAAGTTTFFLGDMQLPADNFLTSPHP", "sequence_length": 595, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "369cf359a6939bf06b21dce41430b61449e7557938969b169437055501cb8f59", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P16848.json", "taxon_id": "10360", "uniprot_accession": "P16848", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human herpesvirus 6A (strain Uganda-1102)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf570-pf04489.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04489", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf570-pf04489.yaml" } ], "pfam_ids": [ "PF04489" ], "protein_name": "U10 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEIVTYKTVSARSPTVTWSSGFGRAIASIQKRNQDNIRKPLRFYTGLLHCLIKQYEHCLVPPNKSIRFDKGKIEVAALILDLGHQVLGRQIHVRQRIYSWTSITLPKLFTPKELYFLIASPEEENIAFNPTITKGGWISGSFSYPVDYRSNFSLTGMSANILMVPFVPYKYPLNYARFISSIDLMILNEQFPEHECGDIQILKQRNYLYLGVIKNLTWKKSVTGTGQTAPHRILKASFIGSWPDTSLPDRVALRFFNNTRFTIHCHEFSINIENLGLVKNKEKVFGTLATVCCEQIPSLLTTENLPKYLIVQFEVVTQIEEPEPLLFSSNPKLYFTGDVLNATIQLQHNPNYYELLVHAPYDIHFYPSRCHIVILPIRYFTKPDKQILISGYQNEGFFETQVMLWAPGTPLHITLRSFSPNLILPQSTPIATLFYVERMTSQNNEQKDVIAKLSENGHFIGNLKLPRENFLHHDAIADSPLASISKDSATPGPETVFSSVSPS", "sequence_length": 503, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4d0f3624b00e3195fe214e5472e4fe8c3c467cdf583d40df709331786fa18063", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q01348.json", "taxon_id": "10370", "uniprot_accession": "Q01348", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human cytomegalovirus (strain Merlin)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf570-pf04489.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04489", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf570-pf04489.yaml" } ], "pfam_ids": [ "PF04489" ], "protein_name": "Protein UL31", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDKPTLVTLLTVAVSSPPPSSPLPLVSFTELLLPPPSVAAAAVAATATSEVGEKTAEQEVAAAGPETRNERRENREDEGGETRTTGTTAVKRSHDGIPRQLAERLRLCRHMDPEQDYRLPAQDVVTSWIEALRDADRDNYGRCVRHAKIHRSASHLTAYESYLVSITEQYNTASNVTEKASYVQGCIFLSFPVIYNNTQGCGYKYDWSNVVTPKAAYAELFFLLCSTSESSVVLQPLITKGGLCSSMAVYDEETMRQSQAVQIGFLHTQLVMVPFVPHACPHYAVPFTTPGKPGCGGAPSGVAGLEETAPFGRVSVTRHGATLLCRVDHLTWISKRVTTYGHKKITRYLAQFRGTMDDDEAALPGEDEAWIASKNVQYEFMGLIFTVNVDSLCVDAEQRQLLGTVATSFCHRVSDKITARNMPRAFSFYLLTSAQRGYDLRFSRNPSLFFSGDALNCPLLNEPNVFSLTVHAPYDIHFGVQPRQTVELDLRYVQITDRCFLVANLPHEDAFYTGLSVWRGGEPLKVTLWTRTRSIVIPQGTPIATLYQITEGDGNVYSYNHHTVFRQMHAAGATTFFLGDMQLPADNFLTSPHP", "sequence_length": 595, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "27f5723f282d9f562dc33996ff1648b51cf018ba16245ad1ab7d9dcc9d5e48cc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6SWA0.json", "taxon_id": "295027", "uniprot_accession": "Q6SWA0", "uniprot_release": "2026_03" } ], "pfam_id": "PF04489", "short_name": "DUF570", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/saf4-yju2-pf04502.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04502", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/saf4-yju2-pf04502.yaml" } ], "pfam_ids": [ "PF04502" ], "protein_name": "Probable splicing factor YJU2B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGERKGVNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRKEERWDMADNEQVLTTEHEKKQKLETDAMFRLEHGEADRSTLKKALPTLSHIQEAQSAWKDDFALNSMLRRRFREKKKAIQEEEERDQALQAKASLTIPLVPETEDDRKLAALLKFHTLDSYEDKQKLKRTEIISRSWFPSAPGSASSSKVSGVLKKLAQSRRTALATSPITVGDLGIVRRRSRDVPESPQHAADTPKSGEPRVPEEAAQDRPMSPGDCPPETTETPKCSSPRGQEGSRQDKPLSPAGSSQEAADTPDTRHPCSLGSSLVADYSDSESE", "sequence_length": 396, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f2c4f9e430314a49746f7bdfe09d0982ae70812357745506cf192e37282645ef", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P13994.json", "taxon_id": "9606", "uniprot_accession": "P13994", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/generation-of-catalytic-spliceosome-for-first-transesterification-step-go0000349.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000349", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/generation-of-catalytic-spliceosome-for-first-transesterification-step-go0000349.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/generation-of-catalytic-spliceosome-for-second-transesterification-step-go0000350.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000350", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/generation-of-catalytic-spliceosome-for-second-transesterification-step-go0000350.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/saf4-yju2-pf04502.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04502", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/saf4-yju2-pf04502.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P28320", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04502" ], "protein_name": "Splicing factor YJU2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "2dca6bd9cae5c155e8d0936a82b5294634e7edaf044b25d8c1126ce438eafc07", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSERKAINKYYPPDYNPLEAEKLSRKMAKKLKTMNKSHASIRLMTPFSMRCLECNEYIPKSRKFNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDYVMEVGGVRNYVPQKPNDDLNAKTAVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKRLAKIQQEQEDDEELENLRKKNLEMSQRAEMINRSKHAQQEKAVTTDDLDNLVDQVFDNHRQRTNKPGNNNDEKRTPLFNPTSTKGKIQKKSSVRTNPLGIVIKRGKSLK", "sequence_length": 278, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2dca6bd9cae5c155e8d0936a82b5294634e7edaf044b25d8c1126ce438eafc07", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P28320.json", "taxon_id": "559292", "uniprot_accession": "P28320", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/saf4-yju2-pf04502.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04502", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/saf4-yju2-pf04502.yaml" } ], "pfam_ids": [ "PF04502" ], "protein_name": "Coiled-coil domain-containing protein 130 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGERKGQNFYYPPDFNYKTHKSLNGYHGTHALRERAKKIDQGILVIRFEMPFNIWCLGCHNHVGMGVRYNAEKKKIGMYYTTPLHEFRMKCHLCDNYYVIRTDPKNFDYELVEGCSRQELRFDPTDIAQIGAVDRGFTQKLAADAMFKKEHEAEDKDKAATEEGRVDKLEWIQERMRDDFTANSFLRAQFRNEKKSLNETRARDANLRDKLSIGTTQLLPETEEDRRIASMMTRYRDTKTHDDHLESSRDRIESRRIFRRPEETDTPSTSSGSSGGAVPSASERLKATMKAERDKRINASFSTAGTSSATQKLLGIKRKSASSLGVQIKKAAPENSSLQDEEPAVEKPNISNPISLIAQEYGNSSDDSD", "sequence_length": 369, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1d43c31063e26c2de6eb1cddd05b764a52ebc61e7dd0e6a0cbfa4dfeb5fc15ec", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q09651.json", "taxon_id": "6239", "uniprot_accession": "Q09651", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/saf4-yju2-pf04502.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04502", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/saf4-yju2-pf04502.yaml" } ], "pfam_ids": [ "PF04502" ], "protein_name": "Coiled-coil domain-containing protein 130 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGERKGQNKYYPPDYDPKKGGLNKFQGTHALRERARKIHLGIIIIRFEMPYNIWCDGCKNHIGMGVRYNAEKTKVGMYYTTPVFKFRMKCHLCDNHFEIQTDPGNLDYVILSGARRQENRWDPLQNEQVVPETKEVQKRLFDDAMYKLEHQAKDAKAGADARPVLQKLVERNMSVWDDSYMANSRLRAEFRQQKKEINGQQELDRQLLAKSSLDIALLPETTQDREMAALMKLQTKSALERESEQRLELLMRPALPGATVTTFGGLKRQKVLNTQLQVQDLGIRRKKLEETTSSATNEKPISLVGDYSSSDNDSNG", "sequence_length": 316, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "42a62c6366e2458c86bd69d7e7ee7d951b033ecd12b38db6bcf0e72bd37cd8dc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7K0F0.json", "taxon_id": "7227", "uniprot_accession": "Q7K0F0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/saf4-yju2-pf04502.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04502", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/saf4-yju2-pf04502.yaml" } ], "pfam_ids": [ "PF04502" ], "protein_name": "Splicing factor YJU2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARKETVQNEVYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNFQAEKLLEEEEKRVQKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDFEAMLRQHRLSEEERRRQQQEEDEQETAALLEEARKRRLLEDSDSEDEAAPSPLQPALRPNPTAILDEAPKPKRKVEVWEQSVGSLGSRPPLSRLVVVKKAKADPDCSNGQPQAAPTPGAPQNRKEANPTPLTPGASSLSQLGAYLDSDDSNGSN", "sequence_length": 323, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c61c1cf95729749073f19d328eb7a1902b3680adc9dce2820fb5500833fc9895", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BW85.json", "taxon_id": "9606", "uniprot_accession": "Q9BW85", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/saf4-yju2-pf04502.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04502", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/saf4-yju2-pf04502.yaml" } ], "pfam_ids": [ "PF04502" ], "protein_name": "Probable splicing factor YJU2B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGERKGQNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILVIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGASRKEERWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHIQEAQNAWKDDFALNSMLRRHFREKKKAMQEEEEKDQALQAKASLAIPLVPESEDDRRLAALLRLHTLDSYEDKQRMKRTEIIHRSWFPSAQGPSASSSKASSVLKKLCQGRRPPPSSTGTVGDLGIVRRKSRDVPESPQCAADNSLSEEQRRPPGTTQGSKTLEEAAEASRTSKTSESKRNCSDQAFPLGSSQEDLLNPNTPNASLVADYSDSESE", "sequence_length": 385, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "53d60ffae3e234bcaabc5b15b326e78498f49837d2c7661f283c1ad71421e6b4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D516.json", "taxon_id": "10090", "uniprot_accession": "Q9D516", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/saf4-yju2-pf04502.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04502", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/saf4-yju2-pf04502.yaml" } ], "pfam_ids": [ "PF04502" ], "protein_name": "Splicing factor YJU2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARKETVQNEAYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNFQAEKLLEEEEKRVQKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDFEAMLRQHRMSQEQWQQQQEEEDERETAALLEEARHRRLLEDSESEDEAPPSRPRAAARPNPTAILNEVPQTKRKAEALCSKAQLAGLVVPKKVKTEANGASEQVGVPTAAGAPKSRKADNPTPQTPGTSSLSQLGAYGDSEDSDS", "sequence_length": 314, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "30321fa693e86b9b987b1687d25464cf4c8cb3255798a5bddbc00711ebf7894b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D6J3.json", "taxon_id": "10090", "uniprot_accession": "Q9D6J3", "uniprot_release": "2026_03" } ], "pfam_id": "PF04502", "short_name": "Saf4_Yju2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 13, "discovery_scanned": true, "example_count": 13, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-c-terminal-domain-ipr053933.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-c-terminal-domain-ipr053933.yaml" } ], "pfam_ids": [ "PF04504", "PF22757" ], "protein_name": "Probable transcription factor At1g11510", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRRFNPLEDPPSASSSDEEGKEIARNSSSDDEDDVSSENPSPLKTTLDAVSDSESGSDEETDSDSELEKKKDQVVTNPVDVKRAKKVKTSEKSGAKRSLEVDEAAVSMDVKRAKKVSGEEEKKKSGGGGEETKKTYFQRLWTEDDEIVVLQGLIDDKKDTGVSNTNKVYELVKKSISFDVSKNQLMEKLRALKKKYENNLGKAKDGVEPTFVKPHDRKAFELSKLVWGGIRMALASGMKSNEKSKKSSKFESVKHELDSSLPNSKNNCEDEVMDEGEVSFTKSSLVRSIVGLGMDELTAQQGLSKLASKDMKRFYEQWKAMQAREFEFFLQKHGFLFEVLSKISEAFGSNA", "sequence_length": 352, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dd405a129a2aebd62de0d1181f5bb21cd3cba569bdc6ee3943d87f5edeecaa28", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0SUU6.json", "taxon_id": "3702", "uniprot_accession": "C0SUU6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-dbd-domain-ipr053932.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053932", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-dbd-domain-ipr053932.yaml" } ], "pfam_ids": [ "PF04504" ], "protein_name": "Probable transcription factor At5g28040", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASDQRDTDFSAESPDLEEDGGGGGGGRGGGETESDEDVVIPEPNEAEDDDHDPDPDPEYEDLNSPSMISRAPATKSSSGTVTVALPAGSAVPVASIPSDSDQKWHRMTEIVHQRPPIDDSRRLFQRLWTDEDEIELLRGFLDYITNHRGNSSHPPDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFSSGKEVFFKSPHDQATFDISRKIWNQTGKIIGFEDNNVMDLEETNHVNNANGSSGFNVSVIGNANVDVDSENGLEKKVTISRKRSRSRIGKIDEDKPVLAPCDGVIPNAVNLNENVAVGCDFGDGRNLGVLIEETVKNCVSPMIKEMMNSTTGMMMAATGGFPGGGAHALGVLSPMLMPSMNLGFGGKGVGDERWRRQQILELEVYSRRLELVQEQIRATVNELKTMPNGG", "sequence_length": 427, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "442368f76a144c8420a7f7bb668b5bb729fc55971689f4737f1e38e5ca86d967", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4K5T4.json", "taxon_id": "3702", "uniprot_accession": "F4K5T4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-dbd-domain-ipr053932.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053932", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-dbd-domain-ipr053932.yaml" } ], "pfam_ids": [ "PF04504" ], "protein_name": "Probable transcription factor At4g01260", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPKQLKKIENPVVSSSEEEESASSGESATSGEESDSSADSPVKESSKKPVVVSKPSGSKTTTKPESSTAAKRSFEKTDEMSKKKSKNSMGEEDVKKKDETLKKNLFVRLFTEEDEAILLQGFLDFATKKENPSDHIDDFYESIKNSISFDVTKPQLVTKIGNLKKKFNGRVSKGLKKGKNEEVMVFSKASDQNCFDLSRKIWGSNGVLYSKSKNMRQVQLGGSVKVDEDDQEPQKHRFVISTLSSGQELVSYLKVENPNSLGVDDTKWSAKLDKIKDGKQKRKMEKNLKKIQAKEEELSMMRSEFVAAVTNVLSKQDNASYSCK", "sequence_length": 325, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b74115dc80170443919ac5a559f445d7b5c788dcaee5b9a82069c493589e38b6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O04608.json", "taxon_id": "3702", "uniprot_accession": "O04608", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-c-terminal-domain-ipr053933.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-c-terminal-domain-ipr053933.yaml" } ], "pfam_ids": [ "PF04504", "PF22757" ], "protein_name": "Probable transcription factor At4g00390", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKKLDPPTAPSSDEDDVETSEDDSSSSEEDEPIKSLPATTAAAPAKSTAVSAATPAKSTSVSAAAPSKSTAVSAAADSDSGSESETDSDSESTDPPKSGSGKTIASKKKDDPSSSTATLALPAVKSGAKRAASEAATTSTKRVKKDEESVKKPALFQRLWSDDDEISMLQGMIDYHADTGKSPSADTNAFYEFQKKSISFEVSKSQFSDKVRSLRKKYRAKEGKDEPRFVKAHDKKAFELSKFIWGPKGIALDSNAKSNGVSKKSASKTKEKLDSVKQDLAFVGVSSTNGDDWFEKSSLARMIAGSGIDEYYVRQKWSSFTLETKKIVEEKFQLMQAKELEAMLDKSVRLTDLTSYFVDASKN", "sequence_length": 364, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1117637a72fad03acd599b9d9feea9f57a0c351819a675907fb01e47554c9998", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O23063.json", "taxon_id": "3702", "uniprot_accession": "O23063", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-c-terminal-domain-ipr053933.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-c-terminal-domain-ipr053933.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-dbd-domain-ipr053932.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053932", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-dbd-domain-ipr053932.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gebp-like-c-pf22757.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gebp-like-c-pf22757.yaml" } ], "pfam_ids": [ "PF04504", "PF22757" ], "protein_name": "Transcription factor STKL2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPLESPATASSSEVESSSEEIFKSSSEESKPKDPVTVPSSKTLKSPSAAVNSKTDSSDDSEKQSFVLTRRKKKEGAAESPAVKSGKKRAGEGSTSRDMHVKRVKKEDDNKKANPQRVWSEEDEISLLQAVIDFKAETGTSPWDHKNAFFDIAKKSISFDVSHVQFFDKIRRLKNKYFVNRKNKSGESNHDKKCLGLAVLIWGSDGMNVESPVKKDESILVKGKANSKEKKVEKPLVIEDEQVILGADSEWFEESFLVPVIANLGLDEYSVKKKWSKVSLETKKKIQEKMKVVDAKKCELLLAEMDVLKDVTSVLAQTN", "sequence_length": 319, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ec2253de81159dda048447e398358e4db6bbd5ee0306d9a0b8cec27e03218101", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O23077.json", "taxon_id": "3702", "uniprot_accession": "O23077", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-c-terminal-domain-ipr053933.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-c-terminal-domain-ipr053933.yaml" } ], "pfam_ids": [ "PF04504", "PF22757" ], "protein_name": "Probable transcription factor At4g00610", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSVQNLKTDQLLNFLFKNPTKFLSRFSPMAKNKTLVTPSTVKKSSDVASTSKKLSGVASPAKKPSGVTSPVKKPLEAVASTSSEEEEEDEPSSDSESGSESESDTEAEPMTLAAAAPSSSNEKRQSEGKPEEERAKTETETGKKPLLFQRLWTDEDEIVFLQGMIKFAKDTGKNVSEDMNGFFEKLKDSISFEVKTDQFVNKIRSMKRKYIENKKTTTEHDKKCYELAEIIWVSDGDATALVKPKKKKLKVDEESDWFERSFVDGAFKELGPGVDEETWKKNWSLVPVKKRKRIEEKVKSMQADELKTTWQKIDVVHEMRSLMAKYV", "sequence_length": 328, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b7d700824e9a1d621f98395b4c1e836f195976bedc3ca5808e039393b0a6354d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O65270.json", "taxon_id": "3702", "uniprot_accession": "O65270", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-c-terminal-domain-ipr053933.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-c-terminal-domain-ipr053933.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-dbd-domain-ipr053932.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053932", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-dbd-domain-ipr053932.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gebp-like-c-pf22757.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gebp-like-c-pf22757.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gebp-like-dbd-pf04504.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gebp-like-dbd-pf04504.yaml" } ], "pfam_ids": [ "PF04504", "PF22757" ], "protein_name": "Transcription factor STKL1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLENPAIDSSSEFESSSEEISSSKESKPKEAPVTVPSTKTLNSPSAAVAVSDDSESEKQSFVLTRRKKKEGAAESPAVKSGKKEGAAESPAVKSGNNEGATESPAVKSGKKRASEGTTSRDMHVKRIKKEGDNKKGHAQRVWSEEDEISLLQAMIDFKAETGTSPWDHKDRFFDIAKKSISFDVSKVQFFDKIRSFKRKYFGDRKVRSVESDHDKKCLGLAVSFWGSDGVSLETPVKKKVKDESVLVKANSKEKNVKPLVKEDEQVVILGEDSEWFEESFLVPVIASLGLDEYSVKKKWSKVSVETKKRIQEKMKLVDAKKCELLLANMDVLKEVTSVLTQTN", "sequence_length": 345, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "286f14dc30575928459e27d4c63ddf2e14bc4b318b7025acdf43eacace7397ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LG05.json", "taxon_id": "3702", "uniprot_accession": "Q8LG05", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-dbd-domain-ipr053932.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053932", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-dbd-domain-ipr053932.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gebp-like-dbd-pf04504.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gebp-like-dbd-pf04504.yaml" } ], "pfam_ids": [ "PF04504" ], "protein_name": "GLABROUS1 enhancer-binding protein-like 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVTPKQIDFSSCGGGDNSDDTLSHRESPRNPSSKRAAASFAAEAGEETMKKKKKKKKKNLGPPLIVRIWNEEDELSILKGLVDYRAKTGFNPKIDWDAFYSFLGSSIVAKFSKEQVLSKIRKLKRRFHVHWEKISEGNDPKFTRSSDSEAFGFSSMIWGQGEFGNDDGMDKEMVKEHDVNGNGAAENGTARIAQENESGEEMLKEHEETLNENGAEEIRDNDETARKAQQLESESEEEMLKEHEEPFNENGAENIRDNNGTTQIAQQSESESEEMLKEHEEVANTELVNENGAAKTTENGTTGGKERHDDDDDDELCAVQDAFEAVMSQGLSGYQKKLQLEKLMNLGTGKRRELSDEWKALCVEERRLNIKKLRFSAKLAEAANDS", "sequence_length": 386, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "608a1feb9eb582caca3c559da34e06662c087c5077dca7ccb53c73332ede5020", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VYD2.json", "taxon_id": "3702", "uniprot_accession": "Q8VYD2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-dbd-domain-ipr053932.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053932", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-dbd-domain-ipr053932.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gebp-like-dbd-pf04504.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gebp-like-dbd-pf04504.yaml" } ], "pfam_ids": [ "PF04504" ], "protein_name": "GLABROUS1 enhancer-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVTPKQIDFSSCVGADNSNGTLSHRRSPRNIPSSKRAASVAEEETMKKKMKMKKKKKKLDPPLIVRIWNEEDELSILKGLVDYRAKTGFNPKIDWDAFCSFLGSSIVERFSKDQVLSKIRKLKRRFHVHSEKINQGNDPKFTRSSDSEAFGFSSMIWGQGDDDGMDKEHEVNGNGAAENRTNESGEEMLKEHEEEVANTELLNENGAAKTTENGTSSGKERHDEDNDDDDELCAVQDAFEAVMSQGLSGYQKKLQLEKLMNLGNGKRRELSDEWKALCVEETRFNIKKLRFSAKLAEAANDS", "sequence_length": 302, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "600e8c0dda0ff8678ce936e5b2988b1ffa27de94edde17a61532ace8535e3892", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ASZ1.json", "taxon_id": "3702", "uniprot_accession": "Q9ASZ1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-c-terminal-domain-ipr053933.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-c-terminal-domain-ipr053933.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-dbd-domain-ipr053932.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053932", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-dbd-domain-ipr053932.yaml" } ], "pfam_ids": [ "PF04504", "PF22757" ], "protein_name": "Probable transcription factor At1g44810", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKKLLNPLEDPPTASSSEDVDEEISSGEDEKEHISNSSSSEEENELKDLSTQTLNSPSTEAPTLDSGSETNSDSDKPIVLTSQKKKEGTDSSGTKRASEGTSSKDIKRAKKVSGDDDNKKFQSLWTKEDEISLLQGMIDFKAETGTSAHDDMNGFFDIAKRYISFDVSKIQFGDKIRGLKKKYFGVRKKKGLDLDHDKKCLGLAKSIWGLDGKEVVVLGGDSETSNWFEKSFLVRVVARLGVDECIVKWKWSKVSKETKKRIEEKMKMVEAKELELLSQKIDVLKEVASVIAETI", "sequence_length": 296, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "19956caf2bd34dc70bb2b0c95b41d0325ff946c4b495f91aecf3cc9227971df5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LPF0.json", "taxon_id": "3702", "uniprot_accession": "Q9LPF0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-c-terminal-domain-ipr053933.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-c-terminal-domain-ipr053933.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gebp-like-c-pf22757.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gebp-like-c-pf22757.yaml" } ], "pfam_ids": [ "PF04504", "PF22757" ], "protein_name": "GLABROUS1 enhancer-binding protein-like", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPKKAEEVVESPPVSSEEEESGSSGEESESSAEVPKKVESSQKPESDSEGESESESSSGPEPESEPAKTIKLKPVGTKPIPETSGSAATVPESSTAKRPLKEAAPEAIKKQKTSDTEHVKKPITNDEVKKISSEDAKKMFQRLFSETDEIALLQGIIDFTSTKGDPYEDIDAFCIYVKKLIDFDATKNQIVTKLQRLKKKFNNAVKNSLKKGKTEDDIEFAKDLEQKGFELSRKIWGSNGVLVTGKSSRKKVGGTPAPKEMKLVAHSTPKKQQEEAKKPERTEAKVVNTGLSIGKEIASFLNADNGSSCGLDESTLTAVWAKVADGAEKREVEEKWKKLKAKQFELCLQRSGLVNETAKMIFKAYES", "sequence_length": 368, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ff6752e48b3b60fcc5c5edbaa8d36951a1dc4c9c0b287d399672d26fddabc6a6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SB42.json", "taxon_id": "3702", "uniprot_accession": "Q9SB42", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-dbd-domain-ipr053932.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053932", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-dbd-domain-ipr053932.yaml" } ], "pfam_ids": [ "PF04504" ], "protein_name": "GLABROUS1 enhancer-binding protein-like 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVGTKRVADSIDTNSDDTLTRNREVEVEAMLSRRKQLRTTTTRTTTTRTTPLSLSSSASKMNWSKNDELVILGGIVDYENETKLSYRSDWDALYRYIKDCVEAKFSKIQLINKVKNMKRKFTYNQGRSNHGEQLSFTNTDDDEIFKLSLIIWDKNESEYVSNENIDQAKDVPSGEPETNDVPCEEQDDRDVPCEEQERANIEIDNGVREKLDQAKDVPCVEQESEDVPCVEQERVSIEIDNGEKEKLDQTMDCEEQENTDVLCEEKGDKDVPCEEQENKDVPCEEQERVSIEIDNGEEEMSSEEDGVDEVGVMEDTLDSGISFQGLGKNGVKDKSEEDDVVELGVLQEIFKEDTFFQSLGRYQQKLLLQNLENVGVERRKELINEWKALFVDEQRLCVKKLTFAAKLANLGVSP", "sequence_length": 414, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bbf340a51c87bae9a1880a2e0c050d8c9306320c2def56ccf2ced58dcc33422e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SJM4.json", "taxon_id": "3702", "uniprot_accession": "Q9SJM4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-c-terminal-domain-ipr053933.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glabrous-enhancer-binding-protein-like-c-terminal-domain-ipr053933.yaml" } ], "pfam_ids": [ "PF04504", "PF22757" ], "protein_name": "Probable transcription factor At1g61730", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKKLNPLEDPPTATSSDEDDVETSEAGEASDDSSSSEEDVPIKIRIKSPSATTAAAPPAKSTAVSTAADSDSGSETETDSDSESTNPPNSGSGKTIALNTVNLKKKEDPTSSSATLALPAMKSGTKRPASEAAATTSTKRVKKDEESVKKPGGFQRLWSEEDEILVLQGMIDFKADTGKSPYVDTNAFYDFLKKSISFEVSKNQFMDKIRSLRKKYIGKEGRNEPSFVKAHDKKAFELSKFIWGPKGIALDSNVKSNGVSKKSVAKKKIDSVKQELVFAGGSSTNGKKVEEDGGDDGCDWFDNSSLVRMIASLGVDEYYVKQQWSLVSVESKKIVEEKYKLLQAKELEFVLEKTKFLNEVASMFVEASKNKPLDT", "sequence_length": 376, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6c9e5838cccfe462dd560ad71e40849f4995119ac151c02e8b7da11d1c1acf5f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SYA9.json", "taxon_id": "3702", "uniprot_accession": "Q9SYA9", "uniprot_release": "2026_03" } ], "pfam_id": "PF04504", "short_name": "GeBP-like_DBD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain bovine RF122 / ET3-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf576-pf04507.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04507", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf576-pf04507.yaml" } ], "pfam_ids": [ "PF04507" ], "protein_name": "Uncharacterized lipoprotein SAB0390/SAB0391", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGYLKRFALYISILVLIVMVAGCGKSDETKEDSKEEQIKKSFAKTLDMYPIKNLQDLYDKEGYRDGEFKKGDKGTWTLLTSFAKSNKPGEIDDEGMVLFLNRNTKKATGYYYISKVHDEFNEKEHQKNIMLNLKIIKIVLLDNVEDEKLKQKIENFKFLSQYADFKDLKNYQDGSITTNENVPSYEAEFKLNNSDENVKKLREVYPITTKKSPVLKLHIDGDIKGSSIGYKNIEFNFSKVKDEETAVRDFVNFGPSDENS", "sequence_length": 260, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5eeaaa33e7e459c94aa84ccb9bda349e5cd34404f3deb01b79aaf5af7cfb6db6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q2YVR0.json", "taxon_id": "273036", "uniprot_accession": "Q2YVR0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain MSSA476)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf576-pf04507.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04507", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf576-pf04507.yaml" } ], "pfam_ids": [ "PF04507" ], "protein_name": "Uncharacterized lipoprotein SAS0403", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEYIKKIALYMSVLLLIIFIGGCGNMKDEQKKEEQTNKTDSKEEQIKKSFAKTLDMYPIKNLEDLYDKEGYRDGEFKKGDKGMWTIYTDFAKSNKADELSNEGMVLYLDRNTRTAKGHYFVKTFYEKDKFPDRKKYKVEMKNNKIILLDKVEDPKLKKRIENFKFFGQYANLKELKNYNNGDVSINENVPSYDAKFKMSNKDENVKQLRSRYNIPTDKAPVLKMHIDGNLKGSSVGYKKLEIDFSKGEKSDLSVIDSLNFQPAKVDEDER", "sequence_length": 270, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b67dbfcae52dc16208af0f779de13884e7b8570bcaa8cd4eac3aa43030b5fa9a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6GC44.json", "taxon_id": "282459", "uniprot_accession": "Q6GC44", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain MRSA252)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf576-pf04507.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04507", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf576-pf04507.yaml" } ], "pfam_ids": [ "PF04507" ], "protein_name": "Uncharacterized lipoprotein SAR0445", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEYIKKIALYMSVLLLIIFIGGCGNMKDEQKKEEQTNKTDSKEEQIKKSFAKTLDMYPIKNLEDLYDKEGYRDGEFEKGDKGMWVLYSSIVSEFKGESLKSRGMILKLDRNKRTAKGSYIIRELKEDKNHDVQKNEKKYPVKLVNNKIIPTEDVKNEDLKREIENFKLFSQYGEFKSLNTDRITNISYNPNAPNYSAEYKINDDDNNIKQLKNRFNIKSNKNPKLLFKGAGNIKGSSVGYKEIQIIFNRNKEESVSCIDSIEFKPSEGDYNE", "sequence_length": 272, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "058f8d99155e0d45117053a82b907c5cd8097bcd567d6a6438167c75eb659602", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6GJM8.json", "taxon_id": "282458", "uniprot_accession": "Q6GJM8", "uniprot_release": "2026_03" } ], "pfam_id": "PF04507", "short_name": "DUF576", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04510", "short_name": "DUF577", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/thiamine-pyrophosphate-transmembrane-transporter-activity-go0090422.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090422", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/thiamine-pyrophosphate-transmembrane-transporter-activity-go0090422.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/acetylcholine-biosynthetic-process-go0008292.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008292", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/acetylcholine-biosynthetic-process-go0008292.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/acetylcholine-secretion-go0061526.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061526", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/acetylcholine-secretion-go0061526.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/neuromast-hair-cell-development-go0035675.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0035675", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/neuromast-hair-cell-development-go0035675.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/otolith-formation-go0032475.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032475", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/otolith-formation-go0032475.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/thiamine-pyrophosphate-transmembrane-transport-go0030974.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030974", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/thiamine-pyrophosphate-transmembrane-transport-go0030974.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/choline-transpo-pf04515.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04515", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/choline-transpo-pf04515.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q53GD3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04515" ], "protein_name": "Choline transporter-like protein 4", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0d06c97efd6f5bd5586ff7c9c2fe8844b44c0a27c0af82e1b4dac93e1ccef465", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGGKQRDEDDEAYGKPVKYDPSFRGPIKNRSCTDVICCVLFLLFILGYIVVGIVAWLYGDPRQVLYPRNSTGAYCGMGENKDKPYLLYFNIFSCILSSNIISVAENGLQCPTPQVCVSSCPEDPWTVGKNEFSQTVGEVFYTKNRNFCLPGVPWNMTVITSLQQELCPSFLLPSAPALGRCFPWTNVTPPALPGITNDTTIQQGISGLIDSLNARDISVKIFEDFAQSWYWILVALGVALVLSLLFILLLRLVAGPLVLVLILGVLGVLAYGIYYCWEEYRVLRDKGASISQLGFTTNLSAYQSVQETWLAALIVLAVLEAILLLMLIFLRQRIRIAIALLKEASKAVGQMMSTMFYPLVTFVLLLICIAYWAMTALYLATSGQPQYVLWASNISSPGCEKVPINTSCNPTAHLVNSSCPGLMCVFQGYSSKGLIQRSVFNLQIYGVLGLFWTLNWVLALGQCVLAGAFASFYWAFHKPQDIPTFPLISAFIRTLRYHTGSLAFGALILTLVQIARVILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAYIMIAIYGKNFCVSAKNAFMLLMRNIVRVVVLDKVTDLLLFFGKLLVVGGVGVLSFFFFSGRIPGLGKDFKSPHLNYYWLPIMTSILGAYVIASGFFSVFGMCVDTLFLCFLEDLERNNGSLDRPYYMSKSLLKILGKKNEAPPDNKKRKK", "sequence_length": 710, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0d06c97efd6f5bd5586ff7c9c2fe8844b44c0a27c0af82e1b4dac93e1ccef465", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q53GD3.json", "taxon_id": "9606", "uniprot_accession": "Q53GD3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/ethanolamine-transmembrane-transporter-activity-go0034228.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/ethanolamine-transmembrane-transporter-activity-go0034228.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/ethanolamine-transport-go0034229.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/ethanolamine-transport-go0034229.yaml" } ], "pfam_ids": [ "PF04515" ], "protein_name": "Choline transporter-like protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGCCSSASAAQSSKREWKPLEDRSCTDIPWLLLFVLFCIGMGFICGFSVATGAAARLVSGYDSYGNICGQRNAKLEAIPNSGLDHTHRKYVFFLDPCNLDLINRKIKSIALCVAACPRQELKTLSDVQKFAEINGSALCSYNIKPSEYTLTSKSSGFCPKLPVPASAPIPFFHRCAPVNISCYAKFAEALITFVSDNSVLHRLISGVMTSKEIILGLCLLSLVLSMILMVIIRYISRVLVWILTVLVILGSLGGTGVLWWLYAKQRRSPKEAVIPEQLQIAEDNLRALLIYAISATVFTVILFLIMLVMRKRVALTIALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGSAVQNEQGFVEYKISGPLQYMWWYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDKRNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRMVLMYIHSQLKGKENACARCMLKSCICCLWCLEKCLSYLNQNAYTATAINSTNFCTSAKDAFVILVENALRVAAINTVGDFMLFLGKVLIVCSTGLAGIMLLNYQQDYTVWVLPLIIVCLFAFLVAHCFLSIYEMVVDVLFLCFAIDTKYNDGSPGREFYMDKVLMEFVENSRKAMKEAGKGGAADARELKPMLRKR", "sequence_length": 653, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cf6f0fb18f7d0954f3853dec4cc756dc57512902856733ae162803d7a629ac27", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6X893.json", "taxon_id": "10090", "uniprot_accession": "Q6X893", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/ethanolamine-transport-go0034229.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/ethanolamine-transport-go0034229.yaml" } ], "pfam_ids": [ "PF04515" ], "protein_name": "Choline transporter-like protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKDSQNYYGKHGTPQKYDPTFKGPIYNRGCTDVICCVLLFLAIVGYVAVGIIAWTHGDPRKVIYPTDSRGEFCGQKGTKNADKPFLFYFNIVKCANPLVLLEFHCPTPQICVKQCPDRYLTLLSARNTRDFDYYKQFCVPGFQNNKGVTEILRDGECPAVITPSKPLAQRCFPAIHASKGVLMVGNETTYEDGHGARKNITDLVEGAKKANKILEARQLAMQIFEDYTVSWYWIIIGLVIAMVLSLLFIVLLRFLAGIMVWVMIVMVILVLGYGIFHCYMEYSRLRGEAGSDVSLVDLGFQTDLRVYLHLRQTWMAFMIILSILEVVIILLLIFLRKRILIAIALIKEASRAVGHVMCSLLYPLVTFFLLCLCIAYWASTSVFLSTSNTAVYKVVDDTACPLLRKTCNPETFPLRNESLQCPTARCQFAFYGGESTYHRALLGLQIFNAFMFFWLANFVLALGQVTLAGAFASYYWAMRKPDDMPAFPLFSAFGRALRYHTGSLAFGSLILAIVQIIRVMLEYLDQRLKAAQNKFAKFLMVCLKCCFWCLEKFIKFLNRNAYIMIAIYGTNFCTSARNAFFLLMRNIIRVAVLDKVTDFLFLLGKLLIVGSVGILAFFFFTHRIRIVQDTAPPLNYYWVPILTVIIGSYLIAHGFFSVYGMCVDTLFLCFLEDLERNDGSAERPYFMSSTLKKLLNKTNKKVAES", "sequence_length": 706, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e72e587438d29422f324302e50bd0a1d69a790c41d5ff5b757627c593f4d8b70", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BY89.json", "taxon_id": "10090", "uniprot_accession": "Q8BY89", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/ethanolamine-transmembrane-transporter-activity-go0034228.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/ethanolamine-transmembrane-transporter-activity-go0034228.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/ethanolamine-transport-go0034229.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/ethanolamine-transport-go0034229.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/choline-transpo-pf04515.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04515", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/choline-transpo-pf04515.yaml" } ], "pfam_ids": [ "PF04515" ], "protein_name": "Choline transporter-like protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDERPHYYGKHGTPQKYDPTFKGPIYNRGCTDIICCVFLLLAIVGYVAVGIIAWTHGDPRKVIYPTDSRGEFCGQKGTKNENKPYLFYFNIVKCASPLVLLEFQCPTPQICVEKCPDRYLTYLNARSSRDFEYYKQFCVPGFKNNKGVAEVLQDGDCPAVLIPSKPLARRCFPAIHAYKGVLMVGNETTYEDGHGSRKNITDLVEGAKKANGVLEARQLAMRIFEDYTVSWYWIIIGLVIAMAMSLLFIILLRFLAGIMVWVMIIMVILVLGYGIFHCYMEYSRLRGEAGSDVSLVDLGFQTDFRVYLHLRQTWLAFMIILSILEVIIILLLIFLRKRILIAIALIKEASRAVGYVMCSLLYPLVTFFLLCLCIAYWASTAVFLSTSNEAVYKIFDDSPCPFTAKTCNPETFPSSNESRQCPNARCQFAFYGGESGYHRALLGLQIFNAFMFFWLANFVLALGQVTLAGAFASYYWALRKPDDLPAFPLFSAFGRALRYHTGSLAFGALILAIVQIIRVILEYLDQRLKAAENKFAKCLMTCLKCCFWCLEKFIKFLNRNAYIMIAIYGTNFCTSARNAFFLLMRNIIRVAVLDKVTDFLFLLGKLLIVGSVGILAFFFFTHRIRIVQDTAPPLNYYWVPILTVIVGSYLIAHGFFSVYGMCVDTLFLCFLEDLERNDGSAERPYFMSSTLKKLLNKTNKKAAES", "sequence_length": 706, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6a87737a8a430424aabe488c24d5552cf9d68bf8dd63af4aa68d0acab33e74e6", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IWA5.json", "taxon_id": "9606", "uniprot_accession": "Q8IWA5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/choline-transpo-pf04515.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04515", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/choline-transpo-pf04515.yaml" } ], "pfam_ids": [ "PF04515" ], "protein_name": "Choline transporter-like protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHCLGAEYLVSAEGAPRQREWRPQIYRKCTDTAWLFLFFLFWTGLVFIMGYSVVAGAAGRLLFGYDSFGNMCGKKNSPVEGAPLSGQDMTLKKHVFFMNSCNLEVKGTQLNRMALCVSNCPEEQLDSLEEVQFFANTSGSFLCVYSLNSFNYTHSPKADSLCPRLPVPPSKSFPLFNRCVPQTPECYSLFASVLINDVDTLHRILSGIMSGRDTILGLCILALALSLAMMFTFRFITTLLVHIFISLVILGLLFVCGVLWWLYYDYTNDLSIELDTERENMKCVLGFAIVSTGITAVLLVLIFVLRKRIKLTVELFQITNKAISSAPFLLFQPLWTFAILIFFWVLWVAVLLSLGTAGAAQVMEGGQVEYKPLSGIRYMWSYHLIGLIWTSEFILACQQMTIAGAVVTCYFNRSKNDPPDHPILSSLSILFFYHQGTVVKGSFLISVVRIPRIIVMYMQNALKEQQHGALSRYLFRCCYCCFWCLDKYLLHLNQNAYTTTAINGTDFCTSAKDAFKILSKNSSHFTSINCFGDFIIFLGKVLVVCFTVFGGLMAFNYNRAFQVWAVPLLLVAFFAYLVAHSFLSVFETVLDALFLCFAVDLETNDGSSEKPYFMDQEFLSFVKRSNKLNNARAQQDKHSLRNEEGTELQAIVR", "sequence_length": 653, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d9fcd0f044257f2b98d554a1a3c5ee691c210b33766135402479ac62bce068ab", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N4M1.json", "taxon_id": "9606", "uniprot_accession": "Q8N4M1", "uniprot_release": "2026_03" }, { "evidence_scope": 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"ProteinTraitsMech", "path": "data/traits/function/pathway/go/xylem-and-phloem-pattern-formation-go0010051.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010051", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/xylem-and-phloem-pattern-formation-go0010051.yaml" } ], "pfam_ids": [ "PF04515" ], "protein_name": "Choline transporter protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRGPLGAVIGRYTSSDGSAPNDGIIKHNRKCRDITFLIIFIAFWVSMIVNSSFGFNQGNPLRLTYGLDYEGNVCGSKHRHRDLTQLELRYWLNPNQVYESGLKDGELKLANARTICLLDCPAPSDDTLNWVCDYPDGEIRLKMNDWIDRNYDYFEFLTPEMRNSSLQLQGPCYPVIFPSVNVYWSCQYIARASNSSLRHWQQMGGVNIQEDMIIDKSIRRSMNSRASVLKRYVADIGKSWPVLIVCGGLVPLFLSIIWLLLIRHFVAAMPWITVVLFNMLLISVTVFYYLKAGWIGNDAVTPIIGEHDPYFHVYGRELTHVRGVAILMTFISVVAILTSIAIIRRILMATSVLKVAAKVIGEVQALIIFPAIPFAMLAIFYMFWISAALHLFSSGQVVQNNCNNTNCCAYDLVLKKVNCDRCCGYSIHYTPHITIAIFFHLFGCYWATQFFIASSATVIAGSVASYYWAQGEASPEIPFLPVFASMKRLARYNLGSVALGSLIVSFVESVRFILEAIRRKTKVSGTIPDHWFWRMAHYTSRGCLKSVEWTIKSVNRNAYIMIAITGKSFCKSSAIATELIISNILRIGKVNVIGDVILFLGKLCVSLFSALFGFLMLDSHRYRASHNKVSSPLLPVLACWALGYIVATLFFAVVEMSIDTIILSFCQDSEENQGNAQHAPPLLLETLDSNQEEEVQSLTH", "sequence_length": 700, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5e9867213f59b07b7ddf28078b690bc094b2b7505555749cc84a58dee62c2ac1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q94AN2.json", "taxon_id": "3702", "uniprot_accession": "Q94AN2", "uniprot_release": "2026_03" } ], "pfam_id": "PF04515", "short_name": "Choline_transpo", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04518", "short_name": "Effector_1", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Myxococcus xanthus (strain DK1622)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/bactofilin-pf04519.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04519", "section": "canonical_examples", "url": 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"ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/bactofilin-pf04519.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04519", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/bactofilin-pf04519.yaml" } ], "pfam_ids": [ "PF04519" ], "protein_name": "Bactofilin BacO", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFTPRTARHTPFERRTTLMANTVIGSSIVIDGEISGDEDLVIQGTVKGKISLKESLYVEGSGVVEADIETQNVEIAGRVTGNIVASDKVELKTDCRVVGDIKAPRILIADGASFKGNVDMDMKER", "sequence_length": 126, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5bccaa499c022cb4f92c16cf979a081479be52a877693cd6e2481c47592b2245", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1D3H1.json", "taxon_id": "246197", "uniprot_accession": "Q1D3H1", "uniprot_release": "2026_03" }, { 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"MATAKELSASSNVDNTVVGPSILISGRLTGDEDLTVRGRVEGELTLSRTLIVEPSGVVKANVAVKNAIVSGVVVGNINATESVELTREGRMVGDIRAPRVIIVDGASFRGRVDMGDVEPGRLPAERPAVVRPTAVTRPTATPARPTIPAARPMPPPPPSRPTPPPPPARPSAPPAVTRPSAPITRPGLGGLGSKPLPPPPPTRVERAEPQAGQAGSAEPPTPVLVGAGAKKKVVVKKKTR", "sequence_length": 240, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "504facdc6242cd85059de3036aaf73546d5fd7dea637213f33a8172f4d5d6606", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1D3H2.json", "taxon_id": "246197", "uniprot_accession": "Q1D3H2", "uniprot_release": "2026_03" } ], "pfam_id": "PF04519", "short_name": "Bactofilin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/senescence-reg-pf04520.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04520", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/senescence-reg-pf04520.yaml" } ], "pfam_ids": [ "PF04520" ], "protein_name": "Protein S40-6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKGRKPTTMNRSDRYLGSYTYGDSHGNSVTDELELGEEDIWSPAVIHDDTTENEESYGTWNLRATLGKNGRVGGLSLAFEGSLVAPPSSSPMIVQKIHGGGGEGEEDRRKLASSAPVNVPDWSKIYRVDSVESIHELDDEDDEDEESGMMPPHEYLAKSQARRSRKIGGGGASVFDGVGRTLKGRELRRVRDAIWSQTGFYG", "sequence_length": 203, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c85dfe92c13fdb17360d71f3c97453713fdde4ef2055731cb18cf72e414764a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O80698.json", "taxon_id": "3702", "uniprot_accession": "O80698", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/defense-response-to-nematode-go0002215.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0002215", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/defense-response-to-nematode-go0002215.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-nematode-larval-development-go0061062.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061062", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-nematode-larval-development-go0061062.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/senescence-reg-pf04520.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04520", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/senescence-reg-pf04520.yaml" } ], "pfam_ids": [ "PF04520" ], "protein_name": "Protein S40-3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEEFQESEVIFSDESFTRKDNKISHNNENYERKSTEKDKISSPVRIPSRTTIRYTEEEGEMTPPHVIIEKRRTEAQMAFSFCTLKGRDLSRHRNTVLRMTGFLEV", "sequence_length": 106, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f5b301e7cb976daa4ddf9587c45f74a66783c556845620498ca0f322b520efd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8GX72.json", "taxon_id": "3702", "uniprot_accession": "Q8GX72", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/senescence-reg-pf04520.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04520", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/senescence-reg-pf04520.yaml" } ], "pfam_ids": [ "PF04520" ], "protein_name": "Protein S40-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEEFDESEIIFSDNYFPIRRREDGNEKENNRPVDFRENSERVWNKSSRRSKTTPLPSAVTAFSSSLPVNIPMRRYSTEEEYSDDDGGRKMIPPHLIVGRRMEGGQMAFSVCTGNGRTLKGRDLSRVRNSVLKLTGFLEA", "sequence_length": 140, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "607b655b5bbbae48e5e3e9f5855df9d615f6454392929b84de64ae37409a7c8f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9C7N7.json", "taxon_id": "3702", "uniprot_accession": "Q9C7N7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/senescence-reg-pf04520.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04520", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/senescence-reg-pf04520.yaml" } ], "pfam_ids": [ "PF04520" ], "protein_name": "Protein S40-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEEFQESDIIFSDQSKISTSSRYTKLYNSRNDEKKGTRRHETAEKTSPVRIPTNNFRCLEWDTTEEEDDKTPPHVIIERRMKEQIAFSACTLKGRDLSRHRNSVLRMTGFLEA", "sequence_length": 114, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "be64e0f88c2998c26246e55f055a89259153739f2fec457609ca25a519b88a43", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FK78.json", "taxon_id": "3702", "uniprot_accession": "Q9FK78", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/senescence-reg-pf04520.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04520", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/senescence-reg-pf04520.yaml" } ], "pfam_ids": [ "PF04520" ], "protein_name": "Protein S40-7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKNPRLDFSSPSSLATISDSADGELNEDDIFAIDISHAPPQARHSPVSSPAKQQTPARQLQRSKSGLKNVEASGILAALPESSGSSSYLSHVFHHKPAAALSTSVSSTASSSSSSGGGASAGSSSSARAIPTAPKPPQERLPFSASFVGGGKYPQSAPVQVPLVSSAMMNRHKKEFKLTDVVDDDEEEEEGEMLPPHEIVARSLAQSSLLSCSVLEGAGRTLKGRDLRQVRNAVFRRTGFID", "sequence_length": 243, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "379cf2632babf38d11503ac7f9b1f98ec4b6bc1c3733245d757490c0336e1e22", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LKA1.json", "taxon_id": "3702", "uniprot_accession": "Q9LKA1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/senescence-reg-pf04520.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04520", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/senescence-reg-pf04520.yaml" } ], "pfam_ids": [ "PF04520" ], "protein_name": "Protein S40-5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARGRKLTMSQSERYLGSSYSYGDSNGNSATDESELTEEDIWSHAVDHSPEMLESHGAWNTRDAVVRNGRVGGGLSLAFEDASSSPRIVHQIRGGGEGGGGGGGGGRVERQLASSAPVNVPDWSKIYRVNSVESIHESDEEEEEDSGMMMPPHEYLAKSQQRRSRKSGGGGSVFEGVGRTLKGRELRRVRDAIWSQTGFYG", "sequence_length": 201, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d189b07ec3c73e2d1aa50972dca8319275344cc4edb54b4f0e05277aaf9972d0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SAA7.json", "taxon_id": "3702", "uniprot_accession": "Q9SAA7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/senescence-reg-pf04520.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04520", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/senescence-reg-pf04520.yaml" } ], "pfam_ids": [ "PF04520" ], "protein_name": "Protein S40-4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATSKCYYPRPSHRFFTTDQHVTATSDFELDEWDLFNTGSDSSSSFSFSDLTITSGRTGTNRQIHGGSDSGKAASSLPVNVPDWSKILGDESRRQRKISNEEEVDGDEILCGEGTRRVPPHELLANRRMASFSVHEGAGRTLKGRDLSRVRNTIFKIRGIED", "sequence_length": 162, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3c3c6f56b7c9717e756a87a30cedb7b267bdf44eebc0c1a90e5dbe057a4b848a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SKN0.json", "taxon_id": "3702", "uniprot_accession": "Q9SKN0", "uniprot_release": "2026_03" } ], "pfam_id": "PF04520", "short_name": "Senescence_reg", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Brome mosaic virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bbmv-gp1-n-pf04522.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04522", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bbmv-gp1-n-pf04522.yaml" } ], "pfam_ids": [ "PF00978", "PF04522" ], "protein_name": "RNA-directed RNA polymerase 2a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSKTWDDDFVRQVPSFQWIIDQSLEDEVEAASLQVQEPADGVAIDGSLASFKLAIAPLEIGGVFDPPFDRVRWGSICDTVQQMVQQFTDRPLIPQAEMARMLYLDIPGSFVLEDEIDDWYPEDTSDGYGVSFAADEDHASDLKLASDSSNCEIEEVRVTGDTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNPIEHRVSRVIDTHCHPDNPDISTGPIYMERVSLARTEATSHSILPTHAYFDDSYHQALVENGDYSMDFDRIRLKQSDVDWYRDPDKYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPEMGDAINMKDTAKAIAKRFRSTFLNVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNVAAETDLCRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLALKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPLTNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAIFSGDDSLIISKVKPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNLVSVPDPLREIQRLAKRKILRDEQMLRAHFVSFCDRMKFINQLDEKMITTLCHFVYLKYGKEKPWIFEEVRAALAAFSLYSENFLRFSDCYCTEGIRVYQMSDPVCKFKRTTEERKTDGDWFHNWKNPKFPGVLDKVYRTIGIYSSDCSTKELPVKRIGRLHEALERESLKLANDRRTTQRLKKKVDDYATGRGGLTSVDALLVKSHCETFKPSDLR", "sequence_length": 822, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "114c980ecca67f9e0b486c94525b51dd4b929e5a5eecd2575ac8ce52cef6e5f7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P03594.json", "taxon_id": "12302", "uniprot_accession": "P03594", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cowpea chlorotic mottle virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bbmv-gp1-n-pf04522.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04522", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bbmv-gp1-n-pf04522.yaml" } ], "pfam_ids": [ "PF00978", "PF04522" ], "protein_name": "RNA-directed RNA polymerase 2a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKFIPEGETYHVPSFQWMFDQTLESDSHHDEAIFVTESINESGVDTSVEITADGTLASYMHAVKPLVEDGLLNPPFDQARWGLCCKNVVDVYDGLLGYRLIPMAEAARMLYLEIDGSFVDESECDDWRPVDTSDGFTEAMFDVMNEIPGEETKNTCALSLEAESRQAPETSDMVPSEYTLADRYVTTREEFASVDSDYDISLNLVSPVEFRVGVCEDTYRHSEADDPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELGDYNVDISKLSVRQSDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELADSVDIKRVACEVAEKFKRAYLNHSGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSEINLQRYQHMIKSDIKPVVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKSRFVVPIGKISSLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNWWCDFHRESMLSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMNTVDCAIFSGDDSLLICKSKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVPDPMREIQRLAKRKIIKSPELLRAHFESFCDRMKFLNKLDEKMINLLCKFVALKYKKPDVENDVRVAIAAFGYYSENFLRFCECYATEGVNIYKVKHPITQEWFEASRDRDGDWFHDWRNPKFPTALDKVWRFFGKYARDDPMKHIEERDRRHRLNRAMNSSLKLAYDRRSLSKDKETVAWVRKTLSK", "sequence_length": 808, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dd5d3122f5742dac8cdeb678690421846bbf89549347aaca5cd26d7d80c2f219", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P20179.json", "taxon_id": "12303", "uniprot_accession": "P20179", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Broad bean mottle virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bbmv-gp1-n-pf04522.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04522", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bbmv-gp1-n-pf04522.yaml" } ], "pfam_ids": [ "PF00978", "PF04522" ], "protein_name": "RNA-directed RNA polymerase 2a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKFVAADEYIVPSFQWLLGPTSSQVESFDSSVAGWIKRYEDESKRPESTVDGSCESFVLAVKPVMIGGQCEPAYDQAKWAETCLNVTNLASGLTGVRLIPLPEMARMIYLDEEDSFVDESEVDDWYPEDTSDGFEYLSADGSDYHQNSEPEEEVLDKSNGTLESEEARHETDVKSICSFRDIPVETTMGHRYLALSEEFASIEVDYQVSSIVTPLNKGSIYMTLDVHEETHPKSGIQDKASIERLEAAGHNALKTHAYFDDSYYEGFEESADFSSDFQRLKIKQSHVDWYKDPDKFFEPVLNFGASSRRVGSQKTVLTALKKRNADVPELSDVVDATEVPICLRQSYLNIYGADCLFESFNIMAKGLDYHKRWKSHKELQGVTLLCETNLQRYQHMIKSDVKPTVTDTLHVERDVPATITFHGKGVTSCFSPFFTACFEKFSLALRESIYVPIGKISSLELKSKALNNKFFLEADLSKFDKSQGELHLEFQRLILINLGFPVPLTNWWCDFHRSILSRWTLRPGVSIPLLSKTNRGCFHLLWEHFSDNAMMAYCFDMSTAELAMFSGDDSLVICGSKPEFDPGVFQSLFNMEVKVMDPSLPYICSKFLLESEFGDVFSVPDPMREIQRLQKRKIPKDVQVLRADFDSFCDRMKFLDRLSELSLSVLCRLTALKYCKPGIEGDVRAWLSGFAYYRENFLRYSECYVTDGIHCYRRVDPMSRFKPIDKFQRSDKEWFHDWRNNEFPKKPIDKMARMFGAYKGPVNNDRVERKAKYKVNAAMHDPFALAYERRYVQELELKNDKGNCSVLRE", "sequence_length": 810, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3b67f4e40570d18deede1dee637c3135fc018fa888a34b77f26aeea0703c3481", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P27462.json", "taxon_id": "12301", "uniprot_accession": "P27462", "uniprot_release": "2026_03" } ], "pfam_id": "PF04522", "short_name": "BBMV_Gp1_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lor-pf04525.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04525", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lor-pf04525.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/lurp-one-related-superfamily-ipr038595.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038595", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/lurp-one-related-superfamily-ipr038595.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/lurp1-related-2-40-160-200.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.40.160.200", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/lurp1-related-2-40-160-200.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:B3H5L1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04525" ], "protein_name": "Protein LURP-one-related 9", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "aea99eb587ec93bffd756b6b0567066bd46f2f7e8b600b2ae67fc6c19cfa0f29", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVSVVGEMFCNPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVDGGIWNIRRKRVLRDAAGIPLLSMRTKGLVPMRYNWEVYKGDSTESDNLLFSAREPNLLSFKTSLDVTLPPDQSSTDISSVEPDFQTFGRYIGSSFKLFEPIHNTLLAEVVHDFTWGGLIKGSYSFKVRVNPYVDFAFVVALLVITDDTSNLR", "sequence_length": 197, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "aea99eb587ec93bffd756b6b0567066bd46f2f7e8b600b2ae67fc6c19cfa0f29", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B3H5L1.json", "taxon_id": "3702", "uniprot_accession": "B3H5L1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lor-pf04525.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04525", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lor-pf04525.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/lurp-one-related-superfamily-ipr038595.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038595", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/lurp-one-related-superfamily-ipr038595.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/lurp1-related-2-40-160-200.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.40.160.200", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/lurp1-related-2-40-160-200.yaml" } ], "pfam_ids": [ "PF04525" ], "protein_name": "Protein LURP-one-related 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQIYNPISPVKTMVKIYPHLAFPVDMDVVQDKILPYLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVDNYDSKSWSNEVYFMDLNGKILFTLRQKKLGFFKSWEGYNSTGTRFRLRKIFKILPRESSSSYKVVMGSRIVDGDQQSCYKIVNRGSVFAIKDGSGRLMAEVKNKLSDISGLDLGDDVLTMMVEPQLDHSLIMGIVIAYKLTKCKL", "sequence_length": 217, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4b5459a663ac470e91d2fa61d7a1608725ec8a184081493ad1fb8380bdff450f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q67XV7.json", "taxon_id": "3702", "uniprot_accession": "Q67XV7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lor-pf04525.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04525", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lor-pf04525.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/lurp-one-related-superfamily-ipr038595.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038595", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/lurp-one-related-superfamily-ipr038595.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/lurp1-related-2-40-160-200.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.40.160.200", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/lurp1-related-2-40-160-200.yaml" } ], "pfam_ids": [ "PF04525" ], "protein_name": "Protein LURP-one-related 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADSETPYHPDPEDLRRIPVDLFASKKLPGLSSGDLGFADSSEHLVFILRKSSSSLKSLLDSSGVPLFSISRLHNGVWELHKGDVEKRKDLVLTVKRTSKRFSKTESEVSFAGESSENLVIKGVPFQKSCTIYSQDSIVAQTSLMYKLRQIYVGRSKFRLTIFPGSIDHSLVVAMVAIFLQG", "sequence_length": 182, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8336bc0b08504a52f5f6c1b428fa69ceaeb60a91fc9b7d42e23ee14c55f43ac0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8GWL2.json", "taxon_id": "3702", "uniprot_accession": "Q8GWL2", 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"record_id": "CDD:cd08760", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/eukaryotic-cytochrome-b-561-including-the-frrs1-gene-product-cytochrom-cd08760.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/air12-domon-domain-ipr045265.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045265", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/air12-domon-domain-ipr045265.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf568-pf04526.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04526", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf568-pf04526.yaml" } ], "pfam_ids": [ "PF03188", "PF04526" ], "protein_name": "Cytochrome b561 and DOMON domain-containing protein At4g12980", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSSYLRISLSFLFWALLLSPAVSQSSSCSSQTFSGVKSYPHCLDLPDLKAILHYSYDASNTTLAVVFSAPPSKPGGWIAWAINPKSTGMAGSQALVASKDPSTGVASVTTLNIVSYSSLVPSKLSFDVWDVKAEEAANDGGALRIFAKVKVPADLAASGKVNQVWQVGPGVSNGRIQAHDFSGPNLNSVGSLDLTGTTPGVPVSGGGGAGNSRIHKRNIHGILNAVSWGLLFPIGAMIARYMRIFESADPAWFYLHVSCQFSAYVIGVAGWATGLKLGSESKGIQYNTHRNIGICLFSIATLQMFAMLLRPRKDHKFRFVWNIYHHGVGYSILILGIINVFKGLSILNPKHTYKTAYIAVIGTLGGITLLLEVVTWVIVLKRKSAKSTKPLKA", "sequence_length": 394, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5a418eaa584f0136543856a4a81ef36c75a11f295a9058cdbf4ab31c77465aab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SV71.json", "taxon_id": "3702", "uniprot_accession": "Q9SV71", "uniprot_release": "2026_03" } ], "pfam_id": "PF04526", "short_name": "DUF568", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human cytomegalovirus (strain AD169)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf587-pf04532.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04532", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf587-pf04532.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/herpes-ul87-pf03043.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03043", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/herpes-ul87-pf03043.yaml" } ], "pfam_ids": [ "PF03043", "PF04532" ], "protein_name": "Protein UL87", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGAAPRRLGCDALIVVGGSAMPRRVLHVPVHVRACNLTQELSTGEDARFCRPRPVNVERVRAVFAALYRACPIHVRTEPERVKLVLGRLLLGPVAVPCFCDGEVEGHGEHLVPTTQFCRGPLLYVHRRCCCGSVTAGRALSYHVLENHVATHVLRGLLSLTEWNRELPSLFCDCPGGGGASGTEERYAMACLPRDLSLHLDDYPYLMVEIGRVLSVSEVDDYVTAVSGYLGEAAAPRIQVHYKLLFGLNVRPQAPCALDATRDFFLLELQKLWLGVEYHHEVTSEFFGRVLAQLHRDRARVMMALRLPEQTVCHLSTFVLSRFKRQVLYFKLQVSYGKCRTGHADRSGGGGNGGNQGHHNLLCYRRLSVTFADTDTVWRNLFYVYYELARDLGSHGTEDRPVSRGYGVSCASRTSRLSPSESTVVSANGHALSSTALPTTSAGHKLSLPRDPAADRVRRYVCIISRLMYARYGERWRKHCQRRSETGEEEEEETLESGETDATPPFDFTGQQLRRAYQEHRRRKHLAVQRYAPCRRKLIGGMEFAEVTGVSLDRIAVNAFNTNRVINMKAALSSIAASGLGVRAPRLPKNMTHSFVMYKHTFKEPACTVSTFVSNDAVYINSLNVNIRGSYPEFLYSLGVYRLHVNIDHFFLPAVVCNSNSSLDVHGLEDQAVIRSERSKVYWTTNFPCMISHTNNVNVGWFKAATAIVPRVSGADLEAILLKELSCIKNMRDVCIDYGLHRVFTQLELRNSYQIPFLAKQLVLFLRACLLKLHGREKRLQLDRLVFEAAQRGLFDYSKNLTAHTKIKHTCALIGSRLANNVPKILARNKKVKLDHLGRNANVLTVCRHVEAHKIPRTRLKVLVEVLGALQSISGTPHTREVIHQTLFRLCSAAAATSGLCSSPPPLCVSSSSSVPSVPTSVSVDGSSEPTSPRARFASR", "sequence_length": 941, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1006d1bdd38cf2ac9e209ed76d42249c6129f3891e425cb3292653a213b0992f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P16730.json", "taxon_id": "10360", "uniprot_accession": "P16730", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human herpesvirus 7 (strain JI)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf587-pf04532.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04532", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf587-pf04532.yaml" } ], "pfam_ids": [ "PF03043", "PF04532" ], "protein_name": "Protein U58", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIDSISEETLIVKSYTVNHCAKNVPVFINSYDLTAEVAKNEDVRLARQVQISLEKIDEVIESIFSASGPSVENVKDQAKFALCRLLLGPVSIPCYCEEWDVNFYLTKCSYNCEGPVLYIYKNASQCCESTYRFSIMTNYHSTHIFRGLLSLQEWNSHLSNILCTCSNVTGDKYTATIFPNNASIYLEYYPYFLCYLCKHLSIIDIEQCTNELIAFLGPKTSQRIIIHYKLLFGFRSKPMNFTVSLLEQVFTLEIQKLYYSVSKHNSTTADFFNVITAKFAEDKYFVLRTFKLSAQITPGIQSFCSLKFKLQTLYLNLKIMKNTKLSISNSFYHGKTLYTLDEKQLVWRNLLLIYYGYNLKDNVKQTQEESLLSMHYIRILERLSLKSFREINQQFSFEIPSYQEKTLQFIPGGNDFAEITSVTHGETTVNAFNTNRVMNVKAALSGEIHCVLHRIPKSMTHSFVMYKRTFKEPSLTVSTFISNDDFTTSSLNINIRGPYCDFLYALGVYRLHVNIQDFFLPAFVCNSNNSMDLHGLENQGIVRKRKKKVYWITNFPCMISNSEKVNVGWFKAGTGIIPKVSGTDLKNVLLKELISIGEIPNITFDMDLHALLTLLEKRNMHQVPFLIKQFFMFLRLGLLVGYGRKQERKVHHIMLFLIQKGFFDFSKNSVANSKIKHACALVGSRLANNVPKILSKQKKMKLDHLGRNANALTVLRFIVENGYYKRKTIFRKLLKYLATTSFNAHVQTESNRLLNLMHNDSKTNFSSLERLYTLR", "sequence_length": 775, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2b3048829e90c09150d0e2910830be0835e5deaac5438e6e3918e15955aec74b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P52363.json", "taxon_id": "57278", "uniprot_accession": "P52363", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human cytomegalovirus (strain Merlin)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf587-pf04532.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04532", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf587-pf04532.yaml" } ], "pfam_ids": [ "PF03043", "PF04532" ], "protein_name": "Uncharacterized protein UL87", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGAAPRRLGCDALIVVGGSAMPRRVLHVPVHVRACNLTQELSTGEDARFCRPRPVNVERVRAVFAALYRACPIHVRTEPERVKLVLGRLLLGPVAVPCFCDGEVEGHGEHLVPTTQFCRGPLLYVHRRCCCGSVTAGRALSYHVLENHVATHVLRGLLSLTEWNRELPSLFCDCPGGGGASGTEERYAMACLPRDLSLHLDDYPYLMVEIGRVLSVSEVDDYVTAVSGYLGEAAAPRIQVHYKLLFGLNVRPQAPCALDATRDFFLLELQKLWLGVEYHHEVTSEFFGRVLAQLHRDRARVMMALRLPEQTVCHLSTFVLSRFKRQVLYFKLQVSYGKCRTGHADRSGGGGNGGNQGHHNLLCYRRLSVTFADTDTVWRNLFYVYYELARDLGSHGTENRPVNRGYGVSCAPRTSRLSPSESTVVSANGHALSSTALPTTSAGHKLSLPRDPAADRVRRYVCIISRLMYARYGERWRKHRQRRSETGEEEEEETLESGETDATPPFDFTGQQLRRAYQEHRRRKHLAVQRYAPCRRKLIGGMEFAEVTGVSLDRIAVNAFNTNRVINMKAALSSIAASGLGVRAPRLPKNMTHSFVMYKHTFKEPACTVSTFVSNDAVYINSLNVNIRGSYPEFLYSLGVYRLHVNIDHFFLPAVVCNSNSSLDVHGLEDQAVIRSERSKVYWTTNFPCMISHTNNVNVGWFKAATAIVPRVSGADLEAILLKELSCIKNMRDVCIDYGLHRVFTQLELRNSYQIPFLAKQLVLFLRACLLKLHGREKRLQLDRLVFEAAQRGLFDYSKNLTAHTKIKHTCALIGSRLANNVPKILARNKKVKLDHLGRNANVLTVCRHVEAHKIPRTRLKVLVEVLGVLQSISGTPHTREVIHQTLFRLCSAAAATSGLCSSPPPLCVSSSSSVPSVPTSVSVDGSSEPTSPRVRFASR", "sequence_length": 941, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2e17d9c556e41fc6a4c5fa9aabf476568537d4302f80d92d5eceab57ceab48e7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6SW55.json", "taxon_id": "295027", "uniprot_accession": "Q6SW55", "uniprot_release": "2026_03" } ], "pfam_id": "PF04532", "short_name": "DUF587", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 12, "discovery_scanned": true, "example_count": 12, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/casparian-strip-membrane-protein-domain-ipr006702.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/casparian-strip-membrane-protein-domain-ipr006702.yaml" } ], "pfam_ids": [ "PF04535" ], "protein_name": "CASP-like protein 5C3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVEVPGSVGTTASLSLRLGQMVLAFGSLLFMTIGVRFYQFTAFCYLVTIMSLAIPWNLTLAMVDIYCVILQQPFQKPRILLAISIGDWVVSVLALASASSAASVVDILRSNESSCPPTICNRYQFAATLAFLTWFLSLSSSLFNLWLLPSLI", "sequence_length": 152, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3e95cd22000d4d06c08950ba0daad657ceb83dc167367a54aaaf88c2489378c4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3ECT8.json", "taxon_id": "3702", "uniprot_accession": "Q3ECT8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/casparian-strip-membrane-protein-domain-ipr006702.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/casparian-strip-membrane-protein-domain-ipr006702.yaml" } ], "pfam_ids": [ "PF04535" ], "protein_name": "CASP-like protein 5A1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMNVSRPAIHPVDALPVAPTAGAIDRPPVRMKDVQGMPGTTGGLILRLSQFVPALISVSVMVTTSDFRSATAFCCLVLAVSLQSLWSLSLFIIDAYALLVRRSLRNHSVVQCFTIGDGVTSTLTFAAASASAGITVLINDLGQCNVNHCTRFETATAMAFISWFAVSPSFILNFWSLATH", "sequence_length": 180, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e4baaf512bc867e32ffb90410d7444d152c957d479b6a24236c6a0c9ed9326e1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NPF8.json", "taxon_id": "3702", "uniprot_accession": "Q6NPF8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/casp-dom-pf04535.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04535", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/casp-dom-pf04535.yaml" } ], "pfam_ids": [ "PF04535" ], "protein_name": "CASP-like protein BLE3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKVHRLMNAVLRLAAAAAAATAAVVMVTSRETTSFFGIQMEAKYSYTPSFIFFVVAYAVAAAYSLLVLAVPAGSALSRLALTTDVVLGMVLAGAVASAGAISDIAKNGNSHAGWLPVCGQIHAYCNHVMAALIAGFVALAVHFVVVMYSLHIVTDVICPCH", "sequence_length": 162, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5072898143a148567f3fef902dfc3253ee528862af850438de5e80426e9dc059", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q84UT5.json", "taxon_id": "39947", "uniprot_accession": "Q84UT5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/plant-integral-membrane-protein-tigr01569-tigr01569.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01569", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/plant-integral-membrane-protein-tigr01569-tigr01569.yaml" } ], "pfam_ids": [ "PF04535" ], "protein_name": "CASP-like protein 1E1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEHESKNKVDGMEMEKGKKESGSRKGLELTMRVLALVLTMVAATVLGVAKQTKVVPIKLIPTLPPLNVSTTAKASYLSAFVYNISANAIACGYTAISIVIVMISKGKRSKSLLMAVLIGDLMMVALLFSSTGAAGAIGLMGRHGNKHVMWKKVCGVFGKFCNQAAVSVAITLIASVVFMLLVVLDALKLP", "sequence_length": 190, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "436a6be05b91cae0893bafb5bd733626bff00ae5566beedf9f7939025726794a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8L8Z1.json", "taxon_id": "3702", "uniprot_accession": "Q8L8Z1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/plant-integral-membrane-protein-tigr01569-tigr01569.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01569", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/plant-integral-membrane-protein-tigr01569-tigr01569.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/casparian-strip-membrane-protein-domain-ipr006702.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/casparian-strip-membrane-protein-domain-ipr006702.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9CAX3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04535" ], "protein_name": "Casparian strip membrane protein 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4c6dd95a9cf099b8451fa300df182a98dabded4e8b7c1f2fa91f06fdc2a59574", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKNESTFIDVPAESSSAMKGKAPLIGVARDHTTSGSGGYNRGLAIFDFLLRLAAIVAALAAAATMGTSDETLPFFTQFLQFEASYDDLPTFQFFVIAMALVGGYLVLSLPISVVTILRPLATAPRLLLLVLDTGVLALNTAAASSAAAISYLAHSGNQNTNWLPICQQFGDFCQKSSGAVVSAFVSVVFFTILVVISGVALKRH", "sequence_length": 204, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4c6dd95a9cf099b8451fa300df182a98dabded4e8b7c1f2fa91f06fdc2a59574", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CAX3.json", "taxon_id": "3702", "uniprot_accession": "Q9CAX3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/plant-integral-membrane-protein-tigr01569-tigr01569.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01569", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/plant-integral-membrane-protein-tigr01569-tigr01569.yaml" } ], "pfam_ids": [ "PF04535" ], "protein_name": "CASP-like protein 1D1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"path": "data/traits/sequence/domain/pfam/casp-dom-pf04535.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04535", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/casp-dom-pf04535.yaml" } ], "pfam_ids": [ "PF04535" ], "protein_name": "Casparian strip membrane protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKESTTIDVGEPSTVTKSSSHVVKDAKKKGFVAVASRGGAKRGLAIFDFLLRLAAIAVTIGAASVMYTAEETLPFFTQFLQFQAGYDDLPAFQYFVIAVAVVASYLVLSLPFSIVSIVRPHAVAPRLILLICDTLVVTLNTSAAAAAASITYLAHNGNQSTNWLPICQQFGDFCQNVSTAVVADSIAILFFIVLIIISAIALKRH", "sequence_length": 206, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b29d03afc86eae1ce66a3508f40b84283038ae414dc4f0c5fe7bdbd49954d2e8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SIH4.json", "taxon_id": "3702", "uniprot_accession": "Q9SIH4", 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"data/traits/structure/homologous_superfamily/cath/3-10-310-50-3-10-310-50.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.310.50", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-10-310-50-3-10-310-50.yaml" } ], "pfam_ids": [ "PF04536" ], "protein_name": "UPF0603 protein YgcG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIVVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW", "sequence_length": 290, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fda7cc5131095f6c3b83b05255fb73fbd159df551a2cd6bfff61436f2b7ae200", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P55140.json", "taxon_id": "83333", "uniprot_accession": "P55140", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tpm-domain-ipr007621.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007621", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tpm-domain-ipr007621.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tpm-phosphatase-pf04536.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04536", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tpm-phosphatase-pf04536.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-10-310-50-3-10-310-50.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.310.50", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-10-310-50-3-10-310-50.yaml" } ], "pfam_ids": [ "PF04536" ], "protein_name": "Inner membrane protein YcfZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKFIILLSLLILLPLTAASKPLIPIMKTLFTDVTGTVPDAEEIAHKAELFRQQTGIAPFIVVLPDINNEASLRQNGKAMLAHASSSLSDVKGSVLLLFTTREPRLIMITNGQVESGLDDKHLGLLIENHTLAYLNADLWYQGINNALAVLQAQILKQSTPPLTYYPHPGQQHENAPPGSTNTLGFIAWAATFILFSRIFYYTTRFIYALKFAVAMTIANMGYQALCLYIDNSFAITRISPLWAGLIGVCTFIAALLLTSKR", "sequence_length": 262, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e0cfbe9f5d9374f6fcdc779490e3a5a2950f22bc364d28bc3b999a0b1d3b6ff6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75961.json", "taxon_id": "83333", "uniprot_accession": "P75961", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tpm-domain-ipr007621.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007621", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tpm-domain-ipr007621.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tpm-phosphatase-pf04536.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04536", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tpm-phosphatase-pf04536.yaml" } ], "pfam_ids": [ "PF04536" ], "protein_name": "Thylakoid lumenal 15.0 kDa protein 2, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAMLFRPPPSQCRSFSPFVFNYSSREVSSSSRLSLKTSGDEENWVSRFRSKSLSLVFSGALALGLSLSGVGFADAKVGVNKPELLPKEFTSVIDVADFLSNGQEKRIAQEIANLEKDTGFKLRVLAQNYPVTPGLAIKDFWQVDDSTIVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGNMFYWKEKGEDASIEAAVMAISSCLREPVGRNNCAEIQ", "sequence_length": 223, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a83a2c093f449c0370ad67d14c6a4b8963f1b4894e3b4e455f2b297dbffd8ebc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LVV5.json", "taxon_id": "3702", "uniprot_accession": "Q9LVV5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/acid-phosphatase-activity-go0003993.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0003993", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/acid-phosphatase-activity-go0003993.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/photosystem-ii-repair-go0010206.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010206", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/photosystem-ii-repair-go0010206.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-10-310-50-3-10-310-50.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.310.50", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-10-310-50-3-10-310-50.yaml" } ], "pfam_ids": [ "PF04536" ], "protein_name": "UPF0603 protein At1g54780, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METLLSPRALSPPLNPKPLSLHQTKPTSHSLSLSKPTTFSGPKHLSTRFTKPESRNWLIDAKQGLAALALSLTLTFSPVGTALASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNNKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAAIDGQPDPGGPTVKDSKRESNFKTKEETDEKRGQFSLVVGGLLVIAFVVPMAQYFAYVSRK", "sequence_length": 285, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e5d22d5aab0dc3316972073d2a09f033f61a54b37a295c6510b631cca5a81b75", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZVL6.json", "taxon_id": "3702", "uniprot_accession": "Q9ZVL6", "uniprot_release": "2026_03" } ], "pfam_id": "PF04536", "short_name": "TPM_phosphatase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 15, "discovery_scanned": true, "example_count": 15, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/calcium-activated-phosphatidylserine-scrambling-go0061589.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061589", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/calcium-activated-phosphatidylserine-scrambling-go0061589.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anoctamin-dimerisation-domain-ipr032394.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032394", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/anoctamin-dimerisation-domain-ipr032394.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anoctamin-transmembrane-domain-ipr049452.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049452", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/anoctamin-transmembrane-domain-ipr049452.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A1A5B4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04547", "PF16178" ], "protein_name": "Anoctamin-9", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7d486267046bc46aff3155c2a872c8cff4aa053ac643881ed52e5796073c851b", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQGEESLRILVEPEGDSFPLMEISTCETEASEQWDYVLVAQRHTQRDPRQARQQQFLEELRRKGFHIKVIRDQKQVFFGIRADNSVFGLYRTLLLEPEGPAPHAELAAPTTIPVTTSLRIRIVNFVVMNNKTSAGETFEDLMKDGVFEARFPLHKGEGRLKKTWARWRHMFREQPVDEIRNYFGEKVALYFVWLGWYTYMLVPAALTGLLVFLSGFSLFEASQISKEICEAHDILMCPLGDHSRRYQRLSETCTFAKLTHLFDNDGTVVFAIFMALWATVFLEIWKRQRARVVLHWDLYVWDEEQEEMALQLINCPDYKLRPYQHSYLRSTVILVLTLLMICLMIGMAHVLVVYRVLASALFSSSAVPFLEEQVTTAVVVTGALVHYVTIIIMTKINRCVALKLCDFEMPRTFSERESRFTIRFFTLQFFTHFSSLIYIAFILGRINGHPGKSTRLAGLWKLEECHASGCMMDLFVQMAIIMGLKQTLSNCVEYLVPWVTHKCRSLRASESGHLPRDPELRDWRRNYLLNPVNTFSLFDEFMEMMIQYGFTTIFVAAFPLAPLLALFSNLVEIRLDAIKMVWLQRRLVPRKAKDIGTWLQVLETIGVLAVIANGMVIAFTSEFIPRVVYKYRYSPCLKEGNSTVDCLKGYVNHSLSVFHTKDFQDPDGIEGSENVTLCRYRDYRNPPDYNFSEQFWFLLAIRLAFVILFEHVALCIKLIAAWFVPDIPQSVKNKVLEVKYQRLREKMWHGRQRLGGVGAGSRPPMPAHPTPASIFSARSTDV", "sequence_length": 782, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7d486267046bc46aff3155c2a872c8cff4aa053ac643881ed52e5796073c851b", "sequence_version": 3, "source_url": 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"data/traits/function/pathway/go/calcium-activated-phosphatidylcholine-scrambling-go0061590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/calcium-activated-phosphatidylcholine-scrambling-go0061590.yaml" } ], "pfam_ids": [ "PF04547", "PF16178" ], "protein_name": "Anoctamin-3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"PF20877" ], "protein_name": "Uncharacterized protein C691.05c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNEKLQSYEKQLTSDIVNNCDLIIEVNASSKTCQETLSSLLRELQLSHFSTAVRPGSDTSIFVFVKVQNDYLIELAHNDRTSSFLCGALDDLNHVNVNSVTDIDSSERIRLVYDKITGSKTEDSLGICPGENPYADIISIFPLHQPKFDIKWSKYWYQLLLGNKKQLDSINAEYGSQVALYFAFADFFKTGVFVLSFWGILGYYFLRPYSYIFAIGVALWGAFFIQFWRVQEHKLTNHWSTVNCQSLAKSMTEFKPQSYRVDSLLGTARPYYPQWEIIVRSTIANVPLFLISGCILLFLIAIAFIVDVTLSEVYSGPLKSIVSLLPAVVFQVLTLPFTFIYSIVAERLTKLENRRTKTDFQASLSGKMFLQNFMLSYTALFLISYIYGPFAEYFVPHYIQNRMSQSFFSVGYIAKSTFKLNPLRLRNQYIYFLTNAQVINYITILAVPQLISYVKKHYMSKPTRELHIQDIPSETVTLKRARSEAEKIEYDCYNDYKDFVLMFGFLVMFSPIYPLAPIFSLVNCVLYIRSSVYRFTKMVKKPVPCRVDSIAPWDQRLSLLSWLGCITMPSICYFYSSTTKPSDKSMVIAAVIGLLSEHLWFLLRMFISSVFPVDKTFFAPAKERQHLLAERSFSIPPVADVPTSTTTAFEEADETLSIYRTAENKKTK", "sequence_length": 668, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e0ef1f6ec932c2fbdd74db3d1524213837484d5504f39bb534ca898b5cd69cd3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O13621.json", "taxon_id": "284812", "uniprot_accession": "O13621", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/cellular-bud-membrane-go0033101.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0033101", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/cellular-bud-membrane-go0033101.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-phosphatidylinositol-dephosphorylation-go0060304.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0060304", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-phosphatidylinositol-dephosphorylation-go0060304.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anoctamin-transmembrane-domain-ipr049452.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049452", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/anoctamin-transmembrane-domain-ipr049452.yaml" } ], "pfam_ids": [ "PF04547" ], "protein_name": "Increased sodium tolerance protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQTITSLDPNCVIVFNKTSSANEKSLNVEFKRLNIHSIIEPGHDLQTSYAFIRIHQDNAKPLFSFLQNLDFIESIIPYHDTELSDDLHKLISISKSKILEAPKQYELYNLSNLTNNPKQSLYFAFLQNYIKWLIPFSFFGLSIRFLSNFTYEFNSTYSLFAILWTLSFTAFWLYKYEPFWSDRLSKYSSFSTIEFLQDKQKAQKKASSVIMLKKCCFIPVALLFGAILLSFQLYCFALEIFIKQIYNGPMISILSFLPTILICTFTPVLTVIYNKYFVEPMTKWENHSSVVNAKKSKEAKNFVIIFLSSYVPLLITLFLYLPMGHLLTAEIRTKVFNAFSILARLPTHDSDFIIDTKRYEDQFFYFIVINQLIQFSMENFVPSLVSIAQQKINGPNPNFVKAESEIGKAQLSSSDMKIWSKVKSYQTDPWGATFDLDANFKKLLLQFGYLVMFSTIWPLAPFICLIVNLIVYQVDLRKAVLYSKPEYFPFPIYDKPSSVSNTQKLTVGLWNSVLVMFSILGCVITATLTYMYQSCNIPGVGAHTSIHTNKAWYLANPINHSWINIVLYAVFIEHVSVAIFFLFSSILKSSHDDVANGIVPKHVVNVQNPPKQEVFEKIPSPEFNSNNEKELVQRKGSANEKLHQELGEKQPASSANGYEAHAATHANNDPSSLSSASSPSLSSSSSSSKTGVVKAVDNDTAGSAGKKPLATESTEKRNSLVKVPTVGSYGVAGATLPETIPTSKNYYLRFDEDGKSIRDAKSSAESSNATNNNTLGTESKLLPDGDAVDALSRKIDQIPKIAVTGGENNENTQAKDDAATKTPLIKDANIKPVVNAAVNDNQSKVSVATEQTKKTEVSTKNGPSRSISTKETKDSARPSNNNTTTTTTTDATQPHHHHHHHRHRDAGVKNVTNNSKTTESSSSSSAAKEKPKHKKGLLHKLKKKL", "sequence_length": 946, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0525fe818feefd722f72f0aa877dc7fb65efd43543d4e3796775977b00bfb043", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P38250.json", "taxon_id": "559292", "uniprot_accession": "P38250", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/calcium-activated-galactosylceramide-scrambling-go0061591.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061591", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/calcium-activated-galactosylceramide-scrambling-go0061591.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/calcium-activated-phosphatidylcholine-scrambling-go0061590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/calcium-activated-phosphatidylcholine-scrambling-go0061590.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/calcium-activated-phosphatidylserine-scrambling-go0061589.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061589", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/calcium-activated-phosphatidylserine-scrambling-go0061589.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anoctamin-transmembrane-domain-ipr049452.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049452", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/anoctamin-transmembrane-domain-ipr049452.yaml" } ], "pfam_ids": [ "PF04547" ], "protein_name": "Anoctamin-9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQDDESSQIFMGPEGDQLPLVEMGSCKPEASDQWDCVLVADLQTLKIQKHAQKQLQFLENLESNGFHFKMLKDQKKVFFGIRADSDVIDKYRTLLMNPEDSGSRDEQSFNIATTRIRIVSFVVNNKLKPGDTFEDLVKDGVFETMFLLHKGEQNLKNIWARWRNMFEPQPIDEIREYFGEKVALYFTWLGWYTYMLVPAAVVGLIVFLSGFALFDSSQISKEICSANDIFMCPLGDHSHRYLRLSEMCTFAKLTHLFDNEGTVLFAIFMALWATVFLEIWKRKRAHEVQSWKLYEWDEEEEEMALELINSPHYKLKDHRHSYLSSTIILILSLFMICLMIGMAHVLVVYRVLAGALFSSLVKQQVTTAVVVTGAVVHYIIIVIMTKVNKYVALKLCKFEESGTFSEQERKFTVKFFILQFFAHFSSLIYIAFILGRINGHPGKSTRLAGLWKLEECHLSGCMMDLFIQMAIIMGLKQTLSNCVEYLCPLLAHKWRLMWASKHGHMSKDPELKEWQRNYYMNPINTFSLFDEFMEMMIQYGFTTIFVAAFPLAPLLALFSNLVEIRLDAIKMVRLQRRLVPRKAKDIGTWLQVLETIGVLAVIANGMVIAFTSEFIPRVVYKYHYGPCRTNRTFTDDCLTNYVNHSLSVFYTKHFNDHSRMEGQENVTVCRYRDYRNEHDYNLSEQFWFILAIRLTFVILFEHFALCIKLIAAWFVPDVPQKVKNEVLQEKYDRIRHRMRFSSRSTDV", "sequence_length": 747, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3f45ce9a0011649f3d8919b0004722de620252c7cbdeb3b8b96ddf523edb1eea", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P86044.json", "taxon_id": "10090", "uniprot_accession": "P86044", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/calcium-activated-galactosylceramide-scrambling-go0061591.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061591", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/calcium-activated-galactosylceramide-scrambling-go0061591.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/calcium-activated-phosphatidylcholine-scrambling-go0061590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/calcium-activated-phosphatidylcholine-scrambling-go0061590.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/calcium-activated-phosphatidylserine-scrambling-go0061589.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061589", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/calcium-activated-phosphatidylserine-scrambling-go0061589.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/calcium-activated-phospholipid-scrambling-go0061588.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/calcium-activated-phospholipid-scrambling-go0061588.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anoctamin-dimerisation-domain-ipr032394.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032394", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/anoctamin-dimerisation-domain-ipr032394.yaml" } ], "pfam_ids": [ "PF04547", "PF16178" ], "protein_name": "Anoctamin-7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRGQAREEDSVVLIDMASPEAGNGCSYGSTAQASEAGKQQVAPSRVGSSAKPPIDFVLVWEEDLRNQENPTKDKTDTHEVWRETFLENLCLAGLKIDQHDVQDEAAAVHYILLRAPWAVLCYYAEDLRLKLPLQELPNQASNWSATLLEWLGIPNILLEHVPDTPPEYYSCQFKASKLQWFLGSDNQDTFFTSTKRHQILFEILAKTPYGHEKKGLFGIDQLLAEGVFSAAFPLHDGPFSAVPESSQVLGLIQRQVLFQHWARWGKWNKYQPLDHVRRYFGEKVALYFAWLGFYTGWLLPAAVVGTVVFLVGCFLVFSDIPTQELCHSSDSFDMCPLCSDCSFWLLSSACTLAQAGRLFDHGGTVFFSLFMALWAVLLLEYWKRKNATLAYRWDCSDYEDIEERPRPQFAATAPMTALNPITGEDEPYFPEKNRVRRMLAGSVVLLMMVAVVIMCLVSVILYRAVMAIIVSRSDNAFLSAWASRIASLTGSVVNLVFILILSKVYVLLAQVLTRWEMHRTQTEFEDAFTLKVFIFQFVNFYASPVYIAFFKGRFVGYPGNYHTLFGIRNEECPAGGCLSELAQELLVIMVGKQIINNVQEVLVPKLKGCWQKFSRGKKAGTGTHPAPWEADYELLPCEGLFHEYLEMVLQFGFVTIFVAACPLAPLFALLNNWVEIRLDARKFVCEYRRPVAERAQDIGIWFHILTGLTHLAVISNAFLLAFSSDFLPRVYYSWTHAPDLHGFLNFTLARAPPTFTSAHNRTCRYRAFRDDDGHYSPTYWTLLAIRLAFVIVFEHVVFSIGRVLDLLVPDIPESVEIKVKREYYLAKQALAENEALLGATGVKDDQPPSSEPSLGLPA", "sequence_length": 859, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": 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"MRVPEKYSTLPAEDRSVHIVNICAIEDLGYLPSEGTLLNSLSVDPDAECKYGLYFRDGKRKVDYILVYHHKRASGSRTLARRGLQNDMVLGTRSVRQDQPLPGKGSPVDAGSPEVPMDYHEDDKRFRREEYEGNLLEAGLELENDEDTKIHGVGFVKIHAPWHVLCREAEFLKLKMPTKKVYHISETRGLLKTINSVLQKITDPIQPKVAEHRPQTTKRLSYPFSREKQHLFDLTDRDSFFDSKTRSTIVYEILKRTTCTKAKYSMGITSLLANGVYSAAYPLHDGDYEGDNVEFNDRKLLYEEWASYGVFYKYQPIDLVRKYFGEKVGLYFAWLGAYTQMLIPASIVGVIVFLYGCATVDENIPSMEMCDQRYNITMCPLCDKTCSYWKMSSACATARASHLFDNPATVFFSVFMALWAATFMEHWKRKQMRLNYRWDLTGFEEEEEAVKDHPRAEYEARVLEKSLRKESRNKETDKVKLTWRDRFPAYFTNLVSIIFMIAVTFAIVLGVIIYRISTAAALAMNSSPSVRSNIRVTVTATAVIINLVVIILLDEVYGCIARWLTKIEVPKTEKSFEERLTFKAFLLKFVNSYTPIFYVAFFKGRFVGRPGDYVYIFRSFRMEECAPGGCLMELCIQLSIIMLGKQLIQNNLFEIGIPKMKKFIRYLKLRRQSPSDREEYVKRKQRYEVDFNLEPFAGLTPEYMEMIIQFGFVTLFVASFPLAPLFALLNNIIEIRLDAKKFVTELRRPVAIRAKDIGIWYNILRGVGKLAVIINAFVISFTSDFIPRLVYLYMYSQNGTMHGFVNHTLSSFNVSDFQNGTAPNDPLDLGYEVQICRYKDYREPPWSEHKYDISKDFWAVLAARLAFVIVFQNLVMFMSDFVDWVIPDIPKDISQQIHKEKVLMVELFMREEQGKQQLLDTWMEKEKPRDVPCNNHSPTTHPEAGDGSPVPSYEYHGDAL", "sequence_length": 960, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a990dc91e09309185a9d09cfccc58d7ad4574cd692e436299c5e1b169055656a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BHY3.json", "taxon_id": "10090", "uniprot_accession": "Q8BHY3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/calcium-activated-galactosylceramide-scrambling-go0061591.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061591", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/calcium-activated-galactosylceramide-scrambling-go0061591.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/calcium-activated-phosphatidylcholine-scrambling-go0061590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/calcium-activated-phosphatidylcholine-scrambling-go0061590.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/calcium-activated-phosphatidylserine-scrambling-go0061589.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061589", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/calcium-activated-phosphatidylserine-scrambling-go0061589.yaml" } ], "pfam_ids": [ "PF04547", "PF16178" ], "protein_name": "Anoctamin-4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEASSSGITNGKNKVFHAEGGLDLQSHQLDMQILPDGPKSDVDFSEILNAIQEMAKDVNILFDELEAVNSPCKDDDSLLHPGNLTSTSEDTSRLEAGGETVRERNKSNGLYFRDGKCRIDYILVYRKSNPQTEKREVFERNIRAEGLQMEKESSLINSDIIFVKLHAPWEVLGRYAEQMNVRMPFRRKIYYLPRRYKFMSRIDKQISRFRRWLPKKPMRLDKETLPDLEENDCYTAPFSQQRIHHFIIHNKDTFFNNATRSRIVHHILQRIKYEEGKNKIGLNRLLTNGSYEAAFPLHEGSYRSKNSIKTHGAVNHRHLLYECWASWGVWYKYQPLDLVRRYFGEKIGLYFAWLGWYTGMLFPAAFIGLFVFLYGVTTLDHCQVSKEVCQATDIIMCPVCDKYCPFMRLSDSCVYAKVTHLFDNGATVFFAVFMAVWATVFLEFWKRRRAVIAYDWDLIDWEEEEEEIRPQFEAKYSKKERMNPISGKPEPYQAFTDKCSRLIVSASGIFFMICVVIAAVFGIVIYRVVTVSTFAAFKWALIRNNSQVATTGTAVCINFCIIMLLNVLYEKVALLLTNLEQPRTESEWENSFTLKMFLFQFVNLNSSTFYIAFFLGRFTGHPGAYLRLINRWRLEECHPSGCLIDLCMQMGIIMVLKQTWNNFMELGYPLIQNWWTRRKVRQEHGTERKINFPQWEKDYNLQPMNAYGLFDEYLEMILQFGFTTIFVAAFPLAPLLALLNNIIEIRLDAYKFVTQWRRPLASRAKDIGIWYGILEGIGILSVITNAFVIAITSDFIPRLVYAYKYGPCAGQGEAGQKCMVGYVNASLSVFRISDFENRSEPESDGSEFSGTPLKYCRYRDYRDPPHSLAPYGYTLQFWHVLAARLAFIIVFEHLVFCIKHLISYLIPDLPKDLRDRMRREKYLIQEMMYEAELERLQKERKERKKNGKAHHNEWP", "sequence_length": 955, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "acb124ea4c7ac0a2eabf9c286d4cfed768be10170e37e2af03322528c8f1a059", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C5H1.json", "taxon_id": "10090", "uniprot_accession": "Q8C5H1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anoctamin-dimerisation-domain-ipr032394.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032394", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/anoctamin-dimerisation-domain-ipr032394.yaml" } ], "pfam_ids": [ "PF04547", "PF16178" ], "protein_name": "Anoctamin-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAPGLRDIPLLPGSPRRLSSRTVARGSQGPKHGQQYLKVPGHRAPGQRDNSSLHPSQVSRRESSRDRSVINNYLDANEPPSSEARLSRMHFHDNQRKVDYVLAYHYRKRGAHLGHGSPGHSLAVISNGETGKERHGGGPGDVELGPLDALEEERREQRDEFEHNLMAAGLELEKDLESKSQGSVFVRIHAPWQVLAREAEFLKIKVPTKKMYEIKAGGSIAKKFSAILQTLSSPLQPRVPEHSNNRMKNLSYPFSREKMYLYNIQEKDTFFDNATRSRIVHEILKRTACSRANNTMGINSLIANNIYEAAYPLHDGEYDSPGDDMNDRKLLYQEWARYGVFYKFQPIDLIRKYFGEKIGLYFAWLGLYTSFLIPSSVIGVIVFLYGCATIEEDIPSKEMCDHQNAFTMCPLCDKSCDYWNLSSACGTARASHLFDNPATVFFSIFMALWATMFLENWKRLQMRLGYFWDLTGIEEEEERSQEHSRPEYETKVREKLLKESGKSAVQKLEANSPEDDEDDEDKLTWKDRFPGYLMNFASILFMIALTFSIVFGVIVYRITTAAALSLNKATRSNVRVTVTATAVIINLVVILILDEIYGAVAKWLTKIEVPKTEQTFEERLILKAFLLKFVNAYSPIFYVAFFKGRFVGRPGSYVYVFDGYRMEECAPGGCLMELCIQLSIIMLGKQLIQNNIFEIGVPKLKKLFRKLKDETEPGESDPDHSKRPEQWDLDHSLEPYTGLTPEYMEMIIQFGFVTLFVASFPLAPVFALLNNVIEVRLDAKKFVTELRRPDAVRTKDIGIWFDILSGIGKFSVIINAFVIAVTSDFIPRLVYQYSYSHNGTLHGFVNHTLSFFNVSQLKEGTQPENSQFDQEVQFCRFKDYREPPWAPNPYEFSKQYWSVLSARLAFVIIFQNLVMFLSVLVDWMIPDIPTDISDQIKKEKSLLVDFFLKEEHEKVKLADEPTQRSQGGGDRSRRSRAASSAPSGRSQPGSIASSGSQHTNV", "sequence_length": 1002, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4c44842e92804d1df4efcab1765e01014fe9dc81ace2e8e8b16e744af3912cf4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CFW1.json", "taxon_id": "10090", "uniprot_accession": "Q8CFW1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/anoct-dimer-pf16178.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16178", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/anoct-dimer-pf16178.yaml" } ], "pfam_ids": [ "PF04547", "PF16178" ], "protein_name": "Anoctamin-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATPGPRDIPLLPGSPRRLSPQAGSRGGQGPKHGQQCLKMPGPRAPGLQGGSNRDPGQPCGGESTRSSSVINNYLDANEPVSLEARLSRMHFHDSQRKVDYVLAYHYRKRGVHLAQGFPGHSLAIVSNGETGKEPHAGGPGDIELGPLDALEEERKEQREEFEHNLMEAGLELEKDLENKSQGSIFVRIHAPWQVLAREAEFLKIKVPTKKMYEIKAGGSIAKKFSAALQKLSSHLQPRVPEHSNNKMKNLSYPFSREKMYLYNIQEKDTFFDNATRSRIVHEILKRTACSRANNTMGINSLIANNIYEAAYPLHDGEYDSPEDDMNDRKLLYQEWARYGVFYKFQPIDLIRKYFGEKIGLYFAWLGLYTSFLIPSSVIGVIVFLYGCATIEEDIPSREMCDQQNAFTMCPLCDKSCDYWNLSSACGTAQASHLFDNPATVFFSIFMALWATMFLENWKRLQMRLGYFWDLTGIEEEEEHSRPEYETKVREKMLKESNQSAVQKLETNTTECGDEDDEDKLTWKDRFPGYLMNFASILFMIALTFSIVFGVIVYRITTAAALSLNKATRSNVRVTVTATAVIINLVVILILDEIYGAVAKWLTKIEVPKTEQTFEERLILKAFLLKFVNAYSPIFYVAFFKGRFVGRPGSYVYVFDGYRMEECAPGGCLMELCIQLSIIMLGKQLIQNNIFEIGVPKLKKLFRKLKDETEAGETDSAHSKHPEQWDLDYSLEPYTGLTPEYMEMIIQFGFVTLFVASFPLAPVFALLNNVIEVRLDAKKFVTELRRPDAVRTKDIGIWFDILSGIGKFSVISNAFVIAITSDFIPRLVYQYSYSHNGTLHGFVNHTLSFFNVSQLKEGTQPENSQFDQEVQFCRFKDYREPPWAPNPYEFSKQYWFILSARLAFVIIFQNLVMFLSVLVDWMIPDIPTDISDQIKKEKSLLVDFFLKEEHEKLKLMDEPALRSPGGGDRSRSRAASSAPSGQSQLGSMMSSGSQHTNV", "sequence_length": 998, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "67d3c7e16e4b6e08ea1dd03bf02e4bd12488ffde71e154664ecfa6399de53081", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NQ90.json", "taxon_id": "9606", "uniprot_accession": "Q9NQ90", "uniprot_release": "2026_03" } ], "pfam_id": "PF04547", "short_name": "Anoctamin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04569", "short_name": "DUF591", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 11, "discovery_scanned": true, "example_count": 11, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/response-to-mannose-go1905582.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905582", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/response-to-mannose-go1905582.yaml" } ], "pfam_ids": [ "PF04570" ], "protein_name": "FCS-Like Zinc finger 12", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSSNPMTWKLSHMVVPGKNSTISPDYFTASQTSPLDMMKFPSPGSSKRYDNGGGIGLGIVAALEKSSIGINPVCHTGAGSKGFDLARYSKRFQFAAGIDLSDSEEYTCVTTRDGLTKVYYKEEEFEFGHNLLNGDQRWRKPIEIAEESPAKERRVLRDCPDFLTSCCLCKKKLQGKDIYMYKGDEGFCSKECRSLKIMEDSLKEQHKLTSVEVLTGEEIASPGIFLI", "sequence_length": 228, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb5fb6a38885c43390eefaf490de0c43cc6d9f12d746f2c44f4598c3f6d69e1d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/F4IE21.json", "taxon_id": "3702", "uniprot_accession": "F4IE21", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/response-to-mannose-go1905582.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905582", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/response-to-mannose-go1905582.yaml" } ], "pfam_ids": [ "PF04570" ], "protein_name": "FCS-Like Zinc finger 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLGNRPRPQMQRTASITRITIEVDGDQTAGQDSDVSMTVVDGGENYAQRFLSPVNHQRNERKYGGRSSPSSFLVNCGFCKRGLAPGRDIYMYKGDAAFCSIECREQQMEHDEGKTRNRVVLSPSK", "sequence_length": 126, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0285524ddabf9866a8fc6219a41cb6140f0fc5e78ade04dfba24ec09da49faee", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4JW68.json", "taxon_id": "3702", "uniprot_accession": "F4JW68", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cellular-response-to-cytokinin-stimulus-go0071368.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071368", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cellular-response-to-cytokinin-stimulus-go0071368.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/response-to-mannose-go1905582.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905582", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/response-to-mannose-go1905582.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zf-flz-domain-ipr007650.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007650", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zf-flz-domain-ipr007650.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zf-flz-pf04570.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04570", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-flz-pf04570.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/zf-flz.yaml", "qualification_status": "NOT_ASSESSED", "record_id": 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"sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MYIQLLCFFLFLFLLLQATMSKRSFKKFVEQELGSLPHFLIYTVLEWSLIVFLFIDGVIAFLSNQFAKFFDLNIPCLLCTRIDHILVPRDPQFYYNESICDSHKKKVSSLAYCHVHKKLSEIKHMCEGCLLSFATEKDSDCDTYKSLIGILHKDLELLIDDERDLPLAFKKDDNLVQTTKNLVDYKTNNIKNDSLKQHCSCCGELLKIKSEKLPKNNNSFLAPAPSPRVSHNKLSENESEFKDMDVDRTPSFVRGGNKFFGIPLSDSAQNSPRWSVRSLKKSVLNKTENASDTTDPTGESILNQLKKEVRLDKKSLIDLYMELDEERSASAVAANEAMAMITRLQAEKAAVQMEALQYQRMMDEQAEYDQEALQSMSSELAKREEEMKELEAEFEVYREKYGCLTDQEDAREEFHKQNGNASAYDDCQETKPVSDLAVSSSNQQENGENIDQNGQSKRSEESTAENVVSADEEKGSESKEGIVKELSEITERLSTLQSNGDLLKHIADVLDVSEGEAILLQISQNLHMLRSFVAMPSESMNL", "sequence_length": 542, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "23208e18d1cd47ec02145e6ccde54b15f8863d651c92193f37cbf4a8ac1b25f2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4HVS6.json", "taxon_id": "3702", "uniprot_accession": "F4HVS6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/myosin-xi-tail-binding-go0080115.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0080115", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/myosin-xi-tail-binding-go0080115.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gtd-binding-domain-ipr007656.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gtd-binding-domain-ipr007656.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zein-binding-pf04576.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04576", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zein-binding-pf04576.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/gtd-binding.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51775", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/gtd-binding.yaml" } ], "pfam_ids": [ "PF04576" ], "protein_name": "Myosin-binding protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSRSFTRALALAFNEWLLMFMLFVNSIFSYVIARFADYSELQSPCLMCSNLDHILRRTKDLKKTHWDIICSKHKSEISSLVYCHAHGKLVDVRGMCETCLFSFATTNKSNAETYRLLVGKLGEDSHFGSKSDRSKYPNCSKLTDCTCCNQLWTPQTAATQVAEREILPKIGLLGKIRTGKQSAPKKSVSFNHLPDVGYTELKIHSDTESEAVFSDTEPKQESSLNHLPPVGYNEPKIGLVGDVRTGKPSTPKKSVSFNHLPDVGYTELKIHSDTESEAVFSEDECVVLKDEDHKYQIVDLQTHPIITLPYDLATDKLLNFDFPLEPFVTRNDREEVQLQETNWRTYSSFPVLIPVNDVPETSEKVFKEEEINSLDNLFLTSRAMKHFAAAKVKEEPIRLQDISSTPDVKENPANASLMEETELICLSDVTATSGAMEHSEVILKEREELIHLQDISVTPDFKENPANASLLEETELICLNDVTSPLRAVEHSAVLLKDKVEPIRLQDGGSLTPDFMENSANASILEETELICVNDVTSTSRTMGHSSVVLKENEEPIRFQDSSLTPDFKENPASTFLVEETELICLNDVTSPSRAMEHSTVFIEEKEELVRHQNITLTQDFMENPANSSLREETELICLNDVTSTSEVAETPEDVLEGIELMSIHDISLDEVSESVTTNQTSVEISKERDTDQADITSLESEYIVVPSPNSMPENSTDNCVSDKKEMKETSLRISSLSEMAPRDVTSHTEAALESESSSFNSMSVAAETNQYSGELLDLADAYNIVVGNEGHYDSNGRQQIENWMKKDTSRVSEDLKALLTQISASRGIEFLSPRDVSPKISVNSSDQETKNLDHDMQLLLQKRMLERNESNLSLEGVSVTEIEGESEGDRLKRQVDYDRKLLTGLYKELEEERSASAVATNQAMAMITRLQEEKASFQMEALQNLRMMEEQAEYDMEAIQRLNDLLVEREKLIQDLEAEIEYFRDQTPQKKNKLDVAEKVTEMDSPSEGMSNKIQSCLVGFDEERLYITSCLEKIENRVNGKAHDDNLPAQESVSELHERVERLKGDLYFLEQVMNSLGHGNEGVQFVKEIASHLQTLRSLSMKRQDQTEC", "sequence_length": 1113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c4e92927953d0707cd8b5037d4dd66800d6cc04efd1e798ec5441ec7f89abee6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4HXQ7.json", "taxon_id": "3702", "uniprot_accession": "F4HXQ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gtd-binding-domain-ipr007656.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gtd-binding-domain-ipr007656.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/gtd-binding.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51775", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/gtd-binding.yaml" } ], "pfam_ids": [ "PF04576" ], "protein_name": "Probable myosin-binding protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSNLIFDQKVINGFAPVLTYAACEWFLILLMFIDALLSYLLVWFARYCRLQMPCFLCSKLLHPLHWRFLLCRNHRSEVSSYMSCQNHGNNLADCRGMCDDCLLSFTKMTGPNPDMNRLLLGKLGYDLLSRSHFAHPRSCSCCNKPWRTRHHTQRLIRLGSRGRNSSSKPNIPAPRHLTRRGSGGSLKKMRDHIATSGSEYVDVGSRDGMAHVGYTELKIHSDSESEFLFSDDDAFLHITDFNVEPSEKRTHKSRRRKSFDDKKMSNHKQPVLQDNQYKKIHVEDNETVESSMLGYNLENRTRQKQPVKAKEHDDVLSELITMSEARPFLLGSPRKYAAGVVTQNENEAEVSGSSSPSGGEFLSPSAENGASREIRIQEHDDSSDFSQNITSSAMEIEEFEAAIEQKESDHMDVSGSVANEPSSDEENEVEGDSKPLISNNMSDSLEQEQSGEEESEVNENNVAEEYFSNEEEDEVNGHTEPLTSKSESGSFAEEQSSEDEDGSNIYSVAKDHSSNEEDVDNEESEPMTSNNVTGVVKEEHSAKEEHGDHEETEPLTSLNISKEEPSLEHSDKDSLKITETRNTSNGSPELKHSASVESFVSISSDIEGESLVEVLKQQLEHGRKSLRDLNKEFEEERNASAIATNQAMAMITRLQEEKAALHMEALQYLRMMDEQAEHDMDALERANDVLADREKEIQDLEMELEYYRVKYPDEPREEILASMGILGNTEETNVTSPTDETSIKDSTDTKLTGSPSAEN", "sequence_length": 760, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "14b61ecf78a35111d8204f40e116f39ab74f62e37a28de552c71db6be0fec3e2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4INW9.json", "taxon_id": "3702", "uniprot_accession": "F4INW9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/myosin-xi-tail-binding-go0080115.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0080115", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/myosin-xi-tail-binding-go0080115.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gtd-binding-domain-ipr007656.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gtd-binding-domain-ipr007656.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/gtd-binding.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51775", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/gtd-binding.yaml" } ], "pfam_ids": [ "PF04576" ], "protein_name": "Myosin-binding protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAANNFATKLSRNTNRITVILVYAFLEWLLMFFIFLNSFFTYFIVKFASFFGLKQVCLLCPKLDRIFERKPENRFTYKELLCQNHIAELASLSFCRTHGKLSESANLCSDCSNREEEQSNIGLGFCTCCQKSLADKPYPNYLLLKSSIWGKTLGDREDGGLILEMIDDDKFGDGFEIDRESYPLGFFRDKAEEGKKQDQQQNGEVISDVESYGLSLREVSEEDGLRSIISNNSPGNEAKSRVSEDEQRNDDTSNVATYGEDQISGRVEEKEEETGVADLLYDQFESKNFTGSQIEEEEEDREETTKELDPETPTSVSTLFNKKLHFLARNEYAAAEDAGDGNVLVSEMDGGDPLRTIERLRETVRAEQEALRDLYAELEEERSASAISANQTMAMITRLQEEKAKVQMEALQYQRMMEEQAEYDQEALQLLNHLMVKREKEKEQLQRELEVYRAKVLEYESKAKNKIIVVENDCEADDDDKEEENREEDNSSEMDVDLEKITLDCVQHMSMLGESLSEFEEERLVILDQLKVLEDRLVTMQDKESAEDPGEFSNSYEEASNGHGGLTMASMAKSLLPLLDAAENESEDGSQGLPESDEKNFGSDSEKLEIIKQVDSVYERLQELETDGEFLKNCMSSAKKGDKGTDILKDILQHLRDLRTIELTNTIENQTTQEE", "sequence_length": 675, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "be57d4745ecf9c05c2f9995b2a9c521a3e9787ce963fab7be93a6c530fea4f19", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0WNW4.json", "taxon_id": "3702", "uniprot_accession": "Q0WNW4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/myosin-xi-tail-binding-go0080115.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0080115", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/myosin-xi-tail-binding-go0080115.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gtd-binding-domain-ipr007656.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gtd-binding-domain-ipr007656.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zein-binding-pf04576.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04576", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zein-binding-pf04576.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/gtd-binding.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51775", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/gtd-binding.yaml" } ], "pfam_ids": [ "PF04576" ], "protein_name": "Myosin-binding protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAANKFATLIHRKTNRITLILVYAFLEWSLIFFILLNSLFSYFILRFADYFGLKRPCLFCSRLDRFFDASGKSPSHRDLLCDDHALQLHSKPVEESNCGFGEFHNDLVHRGCCVEKISSSLCAPIESDFGNLDYPIGDEGQIYNGLKFPRSIFVFEEEKVGSVNLNDSQEETEEKKVPQSHEKLEDDDVDEEFSCYVSSFDCKNKEIATEKEEENRVDLPIEVETAESAPKNLEFYIDEEDCHLIPVEFYKPSEEVREISDINGDFILDFGVEHDFTAAAETEEISDFASPGESKPEDAETNLVASEMENDDEETDAEVSIGTEIPDHEQIGDIPSHQLIPHHDDDDHEEETLEFKTVTIETKMPVLNINEERILEAQGSMESSHSSLHNAMFHLEQRVSVDGIECPEGVLTVDKLKFELQEERKALHALYEELEVERNASAVAASETMAMINRLHEEKAAMQMEALQYQRMMEEQAEFDQEALQLLNELMVNREKENAELEKELEVYRKRMEEYEAKEKMGMLRRRLRDSSVDSYRNNGDSDENSNGELQFKNVEGVTDWKYRENEMENTPVDVVLRLDECLDDYDGERLSILGRLKFLEEKLTDLNNEEDDEEEAKTFESNGSINGNEHIHGKETNGKHRVIKSKRLLPLFDAVDGEMENGLSNGNHHENGFDDSEKGENVTIEEEVDELYERLEALEADREFLRHCVGSLKKGDKGVHLLHEILQHLRDLRNIDLTRVRENGDMSL", "sequence_length": 749, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "46f1d52592ef1d76aef343ea58dd021259044bbbf4a075fc19101ee5a0dc61f4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CAC4.json", "taxon_id": "3702", "uniprot_accession": "Q9CAC4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/myosin-xi-tail-binding-go0080115.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0080115", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/myosin-xi-tail-binding-go0080115.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gtd-binding-domain-ipr007656.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gtd-binding-domain-ipr007656.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zein-binding-pf04576.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04576", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zein-binding-pf04576.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/gtd-binding.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51775", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/gtd-binding.yaml" } ], "pfam_ids": [ "PF04576" ], "protein_name": "Myosin-binding protein 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLAIVSSPTRDVVRCCDCGCDCSLNGASPGSLLRSVKRKYEEFENEKLFHIPELELDLSSNAKVQIENELELLRETVSSQQQSIQDLYEELDEERNAASTAASEAMSMILRLQRDKAELQMELRQFKRFAEEKMEHDQQELLDLEDLIYKREQTIQALTFEAQAYKHRMMSFGFTEAEVETEKNMLSRNPSMIENDYQYDLPTSDYPPIKCNVNENPGPLEADIDVDDVEKYPLADSPHPLKTLERRISQMERNPSFTQPTGDVSGGRHYTEKNVVGQSPRHQRHFRRVSTGSASSLLGTTREKRLDFSNDSPRSNNGSFRKMEDPPYAAGNSFARDKGDSSEIGDNDMNDRVYTIDSVHHSVSHSGTAEQKFKNDTADGYAMSPREISNQPDLGDPEISKLYMRLQALEADRESMRQAIMSMRTEKAQMVLLKEIAQHLSKDVVPERRLPLRKTSIIGAFNFISVFKWITSFVFWRRKARRSKYMNGVQGNNMGLQMLLEKTPRIRQWRCLSSTQV", "sequence_length": 518, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8620bff891d7014afea9a3717bb42f266c105745d4dcf7241cffea19d3963341", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FG14.json", "taxon_id": "3702", "uniprot_accession": "Q9FG14", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gtd-binding-domain-ipr007656.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gtd-binding-domain-ipr007656.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/gtd-binding.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51775", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/gtd-binding.yaml" } ], "pfam_ids": [ "PF04576" ], "protein_name": "Protein FLOURY 1-like", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVYFFVMEITSFLKLLSQTDGFGFGIFVIGCSSQFFNLVFLCCLLLLGLKFLSFKGTSLFLQYLEKINRISPNIEFFNSFNREHKDCNNNNNNNNNNNGFISKSHLADGLDQKKPIILHWSSDSTNRLSWENCDLLLLRDGLDHIQNRENTVALSETELDEKNHHGEEEESEDEEESQSQNDEDQLLDVITLRTMVKRERKRGDYMKKELEKERRAAESAAEEAMAMLLKLRMEKSVVEMETKQYKRVAEQKQVYDQEVIQSLQWMLMKLDDDEDKIQM", "sequence_length": 280, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c2385eca3481590d397305d0661e6320abc3d23a2530b0c262bc11dc466efb56", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LM24.json", "taxon_id": "3702", "uniprot_accession": "Q9LM24", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/myosin-xi-tail-binding-go0080115.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0080115", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/myosin-xi-tail-binding-go0080115.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gtd-binding-domain-ipr007656.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gtd-binding-domain-ipr007656.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/gtd-binding.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51775", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/gtd-binding.yaml" } ], "pfam_ids": [ "PF04576" ], "protein_name": "Probable myosin-binding protein 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNRSFKNFIEEELGTFPQFLIYALLEWILIIILFIDGFLAFFSNQIAKFFDLKIPCLLCTRLDHVLVSRNPDFYYNDSICDAHKKNVSSLAYCHVHKKLSEIKRMCEGCLLSFATEKETDVDTYKSLIGILHKDLELLIDDERELQLAFPVAGSKKDENFYQVENRTNNSNDRFQRQQRCSCCGQIMKLKSDKPKSNNQSFFGAPSPSPRVSFNQRTLDLSNIKYTDLPEDDDALNTKGASLDAVDDRTPSFVKGGNKFFGIPLSDSAQNSPRWSVRSMKKSFVDQNGLESEVLDGDSILQHLNRQVRLDRKSLMDLYMELDEERSASAVAANNAMAMITRLQAEKAAVQMEALQYQRMMDEQAEYDQEALQSMNGLLVKREEEMKELEAGIEVYRLRYGLLREERGEAEEFLDEETKPVSDLPVCSSNHEEDLEQMKDSAEDSIGNNGVMIIEEEKENGSRKDMLVKEISEITERLNAIESKGELLQQISDVLDVSEGEAILLQISQNLHMLRSFIEMPTES", "sequence_length": 524, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3b296eda933fc44e761878c207718614f2290e2c501a5be8e0d82a08707a7134", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LMC8.json", "taxon_id": "3702", "uniprot_accession": "Q9LMC8", "uniprot_release": "2026_03" } ], "pfam_id": "PF04576", "short_name": "Zein-binding", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/protein-o-acetylglucosaminyltransferase-activity-go0097363.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097363", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/protein-o-acetylglucosaminyltransferase-activity-go0097363.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glycosyltransferase-61-catalytic-domain-ipr049625.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycosyltransferase-61-catalytic-domain-ipr049625.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/glyco-transf-61-pf04577.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04577", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/glyco-transf-61-pf04577.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5NDL2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04577" ], "protein_name": "EGF domain-specific O-linked N-acetylglucosamine transferase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3a148377908f52a8d44d9e4dafaf90c551fe2d6b5bed139b06f43bafa8598be7", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLMLFVFGVLLHEVSLSGQNEAPPNTHSIPGEPLYNYASIRLPEEHIPFFLHNNRHIATVCRKDSLCPYKKHLEKLKYCWGYEKSCKPEFRFGYPVCSYVDMGWTDTLESAEDIFWKQADFGYARERLEEMHVLCQPKETSDSSLVCSRYLQYCRATNLYLDLRNIKRNHDRFKEDFFQSGEIGGHCKLDIRTLTSEGQRKSPLQSWFAELQSYTQLNFRPIEDAKCDIVIEKPTYFMKLDAGVNMYHHFCDFINLYITQHVNNSFSTDVYIVMWDTSSYGYGDLFSDTWNAFTDYDVIHLKTYDSKRVCFKEAVFSLLPRMRYGLFYNTPLISGCQNTGLFRAFAQHVLHRLNITQEGPKDGKIRVTILARSTEYRKILNQNELVNALKTVSTFEVQIVDYKYRELGFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAVFELYNCEDERCYLDLARLRGVHYITWRRQNKVFPQDKGHHPTLGEHPKFTNYSFDVEEFMYLVLQAADHVLQHPKWPFKKKHDEL", "sequence_length": 527, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3a148377908f52a8d44d9e4dafaf90c551fe2d6b5bed139b06f43bafa8598be7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5NDL2.json", "taxon_id": "9606", "uniprot_accession": "Q5NDL2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/glyco-transf-61-pf04577.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04577", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/glyco-transf-61-pf04577.yaml" } ], "pfam_ids": [ "PF04577" ], "protein_name": "Beta-1,2-xylosyltransferase RCN11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMPVRTYHHHHHHNNSNNHRLRRIIPRVLLAVFAIYAVSFAAYLLRHQSPHPHPHPAADPERDAVDAAGGGGGGGAVDRVRVEAPSSQKPWPRLPSFLPWTSASVRPPPKHSCEGYFGNGFSRLVDVLPARGGGGGGWFRCHHSETLRSSICEGGRVRLDPGLIAMSRGGEPLDQVMGRAEEEELPKYEPGALQVEAAAKRTGPLVEAGFLDAYVPTGGIGMHTMRSLLDSGRVVPPGELHCSQWVEEPTLLVTRFEYANLFHTITDWYSAYVSSRVTDLPNRPNVVFVDGHCKAQLEQTWEALFSNVTYVKNFSGPVCFRHAILSPLGYETALFKGLSESFSCEGASAESLREKPDHQKTARLSEFGEMILASFDLLRDDILSSKTSNGLNVLFVRREDYLAHPRHSGKVESRLSNEKEVYDAIEGWAKGQKCKINVINGLFAHMNMKEQLRAIQEASVVIGAHGAGLTHLVSATPDTKVLEIISSMYRRPHFALISHWKSLEYHAINLPGSYARVTDVINELSNILKGFGC", "sequence_length": 533, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95711c21ef9bb1b860daa16fe4cf31692c0c51decbf1c3913d77f0e96c0311c9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZFH6.json", "taxon_id": "39947", "uniprot_accession": "Q6ZFH6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/protein-o-acetylglucosaminyltransferase-activity-go0097363.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097363", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/protein-o-acetylglucosaminyltransferase-activity-go0097363.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glycosyltransferase-61-catalytic-domain-ipr049625.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycosyltransferase-61-catalytic-domain-ipr049625.yaml" } ], "pfam_ids": [ "PF04577" ], "protein_name": "Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHLSAVFNALLVSVLAAVLWKHVRLREHAATLEEELALGQQSLDPVLGLKIDYPKALQILMEGGTHMVCTGRTHTDRICRFKWLCYSNEAEEFIFFHGNSSVMLPNLGSRRFQPALLDLSTVEDHNAQYFNFVELPAAALRFMPKPVFVPDVALIANRFNPDNLMHVFHDDLLPLFYTLRQFPGLAQEARLFFMEGWGEGAHFDLYKLLSPKQPLLRAQLKTLGRLLCFSHAFVGLSKVTTWYQYGFVQPQGPKANILVSGNEIRQFTRFMTERLNVSHAGAPLGEEYILVFSRTQNRLILNEAELLLELAQEFQMKTVTVSLEDHTFADVVRLVSNASMLVSMHGAQLVTALFLPRGATVVELFPYAVNPDHYTPYKTLATLPGMDLQYVAWRNMIRENTVTHPERPWDQGGITHLDRAEQARILQSREVPRHLCCRNPEWLFRIYQDTRVDIPSLMQSIRRVVKGRPGPRRQRWAISLYPGKVREARCQASVQGATEARLSVSWQIPWNLKYLKVREVKYEVWLQEQGENTYVPYMLTLQNHTFTENIKPFTTYLVWVRCIFNRSLLGPFADVLVCST", "sequence_length": 580, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "de58ee4b04f25d93fc6a5ff821ba882c0c32334dca422c397065a6894b3ffb36", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BW41.json", "taxon_id": "10090", "uniprot_accession": "Q8BW41", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glycosyltransferase-61-catalytic-domain-ipr049625.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycosyltransferase-61-catalytic-domain-ipr049625.yaml" } ], "pfam_ids": [ "PF04577" ], "protein_name": "EGF domain-specific O-linked N-acetylglucosamine transferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLMLLVFGVLLHEVPLSGQDKAHSEADDAPGKALYDYSSLRLPAEHIPFFLHNNRHVASVCREDSHCPYKKHLENLNYCWGYEKSCAPEFRFGSPVCSYVDLGWTDTLESAQDMFWRQADFGYARERLGEIRTICQPERASDSSLVCSRYLQYCRATGLYLDLRNIKRNHDRFKEDFLQGGEIGGYCKLDSHALVSEGQRKSPLQSWFAELQGYTQLNFRPIEDAKCDIVVEKPTYFMKLDAGINMYHHFCDFLNLYLTQHVNNSFSTDVYIVMWDTSTYGYGDLFSDTWKAFTDYDVIHLKTYDSKKVCFKEAVFSLLPRMRYGLFYNTPLISGCQNTGLFRAFSQHVLHRLNITQEGPKDGKVRVTILARSTEYRKILNQDELVNALKTVSTFEVRVVDYKYRELGFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAVFELYNCEDERCYLDLARLRGIHYITWRKPSKVFPQDKGHHPTLGEHPKFTNYSFDVEEFMYLVLQAAEHVLQHPQWPFKKKHDEL", "sequence_length": 527, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6a6f9cbbb2f3ea999e60d2a4cc9d14dd15824b0ed6c64fe7cb8040d290b29e89", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BYW9.json", "taxon_id": "10090", "uniprot_accession": "Q8BYW9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/protein-o-acetylglucosaminyltransferase-activity-go0097363.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097363", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/protein-o-acetylglucosaminyltransferase-activity-go0097363.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glycosyltransferase-61-catalytic-domain-ipr049625.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycosyltransferase-61-catalytic-domain-ipr049625.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/glyco-transf-61-pf04577.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04577", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/glyco-transf-61-pf04577.yaml" } ], "pfam_ids": [ "PF04577" ], "protein_name": "Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2", 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"ProteinTraitsMech", "path": "data/traits/function/pathway/go/post-translational-protein-targeting-to-membrane-translocation-go0031204.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031204", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/post-translational-protein-targeting-to-membrane-translocation-go0031204.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glycosyltransferase-61-catalytic-domain-ipr049625.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycosyltransferase-61-catalytic-domain-ipr049625.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9LDH0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04577" ], "protein_name": "Beta-1,2-xylosyltransferase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "63e4a4ff9a3d4a8e5bc62152cb72f201da311cd6743a665ef4e3a302763c153b", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSKRNPKILKIFLYMLLLNSLFLIIYFVFHSSSFSPEQSQPPHIYHVSVNNQSAIQKPWPILPSYLPWTPPQRNLPTGSCEGYFGNGFTKRVDFLKPRIGGGGEGSWFRCFYSETLQSSICEGRNLRMVPDRIVMSRGGEKLEEVMGRKEEEELPAFRQGAFEVAEEVSSRLGFKRHRRFGGGEGGSAVSRRLVNDEMLNEYMQEGGIDRHTMRDLVASIRAVDTNDFVCEEWVEEPTLLVTRFEYANLFHTVTDWYSAYVSSRVTGLPNRPHVVFVDGHCTTQLEETWTALFSGIRYAKNFTKPVCFRHAILSPLGYETALFKGLSGEIDCKGDSAHNLWQNPDDKRTARISEFGEMIRAAFGLPVNRHRSLEKPLSSSSSSASVYNVLFVRREDYLAHPRHGGKVQSRLINEEEVFDSLHHWVATGSTGLTKCGINLVNGLLAHMSMKDQVRAIQDASVIIGAHGAGLTHIVSATPNTTIFEIISVEFQRPHFELIAKWKGLEYHAMHLANSRAEPTAVIEKLTEIMKSLGC", "sequence_length": 534, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "63e4a4ff9a3d4a8e5bc62152cb72f201da311cd6743a665ef4e3a302763c153b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LDH0.json", "taxon_id": "3702", "uniprot_accession": "Q9LDH0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/1-4-beta-d-xylan-synthase-activity-go0047517.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0047517", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/1-4-beta-d-xylan-synthase-activity-go0047517.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glycosyltransferase-61-catalytic-domain-ipr049625.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycosyltransferase-61-catalytic-domain-ipr049625.yaml" } ], "pfam_ids": [ "PF04577" ], "protein_name": "Xylan glycosyltransferase MUCI21", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRQNLKKVAQIKVDESKKLFPYVFRVKTSCGNCAKRSKPKLIYLLIFSLISSCFVFAPQLLCFPYPSALFLIDSSIKEIENRVSESNIESPKTSQKEESISCDRTGYRSDICFMKGDIRTHSPSSSIFLYTSNDLTTDQVLQEKIKPYTRKWETSIMETIPELKLVTKDMKLFGDKRKCEVIHEVPAVLFSTGGYTGNLYHEFNDGLIPLYITSKRFNKKVVFVIAEYHKWWEMKYGDVLSQLSDYSLIDFNKDKRTHCFKEAIVGLRIHGELTVDPSQMQDDGTTINEFRNVLDRAYRPRINRLDRLEEQRFHARLAQRRKAKRPKLALFSRTGSRGITNEDLMVKMAQRIGFDIEVLRPDRTTELAKIYRVLNSSKVMVGVHGAAMTHFLFMKPGSIFIQIIPLGTDWAAETYYGEPAKKLGLDYNGYKILPRESSLYEKYDKDDPILKDPNSITKKGWQFTKGIYLNDQKVRLDLHRFKKLLIDAYAKSIR", "sequence_length": 494, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "505d4d48c3e9e66caa600addea5d0da5cdc40a7cdcde4493d044fb41a2361d97", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SS43.json", "taxon_id": "3702", "uniprot_accession": "Q9SS43", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glycosyltransferase-61-catalytic-domain-ipr049625.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycosyltransferase-61-catalytic-domain-ipr049625.yaml" } ], "pfam_ids": [ "PF04577" ], "protein_name": "EGF domain-specific O-linked N-acetylglucosamine transferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPILPILIGILHLSLAEDAKHLDGFSLPSLPSEHLIRYLNTFPKLKQQLPTNLTGKGTISSACWGHERDCTPAGRFQTPQCPGEHTGWARSKEAQVRTFYNQADFGYIQEQLSQLTPQCVPTYLGDSSLECTHYLRFCRGRNLLFDFRGLEQREERIRYHMDVLGPGQLLGHCKLNRTRLSGEMEHIGSALQSWGPELRNFDVLPHPVLESGLCDVVVNTPTFIMKIDATYNMYHHFCDFFNLYASLFVNQSHPAAFNTDVQILIWETYPYDSPFRDTFKAFSQRPVWTLSDVEGKRVCFKNVVLPLLPRMIFGLFYNTPIIQGCSNSGLFRAFSEFILHRLQIPYKPPQQKIRITYLSRRTKYRQVLNEDELLAPLEANDKYDVQRVSYERLPFTNQLAITRNTDILIGMHGAGLTHLLFLPNWACIFELYNCEDPNCYKDLARLRGVRYRTWEQRDLVYPQDEGHHPEGGAHAKFTNYSFDVKEFVHLVDGAAEEILSHKEFPRRASENPSKTQRNEL", "sequence_length": 520, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d77e0629dca10787a3710cab6963922d73270ffee9e0f6e8cc5a6c2587027266", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VQB7.json", "taxon_id": "7227", "uniprot_accession": "Q9VQB7", "uniprot_release": "2026_03" } ], "pfam_id": "PF04577", "short_name": "Glyco_transf_61", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04578", "short_name": "DUF594", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04591", "short_name": "DUF596", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04601", "short_name": "DUF569", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/tigr01741-family-protein-tigr01741.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01741", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/tigr01741-family-protein-tigr01741.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yezg-like-pf04634.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04634", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yezg-like-pf04634.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/immunity-protein-yezg-like-superfamily-ipr036170.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036170", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/immunity-protein-yezg-like-superfamily-ipr036170.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/bh3703-like-domains-3-30-500-20.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.500.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/bh3703-like-domains-3-30-500-20.yaml" } ], "pfam_ids": [ "PF04634" ], "protein_name": "Immunity protein YezG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQDLYQLIGEKLNDIIPGEWTKIYLYAEVLDDSTMVLFHFRTPENNQIIYSQDIPSHYNVSKDIFKTLLRELRELFEELRTEHRNNNDDVWTNLTLTLDRSGEFQLDYNYDDILASELDGYERIAIWEYKNLGILPEDEDDKEFVISYLGL", "sequence_length": 151, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "934deb8654814328d2b2ee8da9908d965f80ec941d79b6086308b0fdf8a1a0e1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0H3X4.json", "taxon_id": "224308", "uniprot_accession": "C0H3X4", "uniprot_release": "2026_03" } ], "pfam_id": "PF04634", "short_name": "YezG-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/platz-pf04640.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/platz-pf04640.yaml" } ], "pfam_ids": [ "PF04640" ], "protein_name": "Uncharacterized protein At3g50808", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQYMDISGIHLYSINGFPIVYINQRRGNNNHRSRSNVMHKCKICEWEIDAASSALFCSMECKFRSVLGSQLDELMENSSEVTEISEEIDEPVMKKRHRRKGSPHRAPFF", "sequence_length": 110, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/six-hairpin-glycosidase-superfamily-ipr008928.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008928", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/six-hairpin-glycosidase-superfamily-ipr008928.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/gh116-catalytic-pf04685.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04685", "section": "canonical_examples", "url": 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"MVDINLECVHQIEPKTRSAGQQQQERGLKEAYLEAVRILLVLLENILAQPENSMFRTIRQENKAIKEKLLSLPGCERLLEAIGFVRAPSSNAYTLPTEVSLQQVKKYRDALSERRTAWLNGTVSKSPPQQSTTSTTPLFIKPSVEYRHRIAFPRVLRTNNNFLQSLELYSDAVMQYEDNLLLATGRTLIPVEELTEMASEKLIDIQDQIASGERQEKEPCVRDLLLVELVNWFNTQFFQWVNNIPCRVCGSEESRLRRTEREGDIRVEVTVCCGQESKFYRYNDISQLLVSRKGRCGEYANCFTFLCRALDYDARIVHSHFDHVWTEVYSEAQMRWLHVDPSENVIDSPLMYQHGWKRHIDYILAYSRDDIQDVTWRYTNDHQKILHLRKLCGEKEMVQTLDAIRAKRRQNCTADRKLFLSQRNMYEVIGLTLERKPTENELKGRSSGSLSWRQSRGEHTFTNIFVFNLSATELQKRQLNVRYSCATDTYERYAKEGEHITILDSYKTWQKAQFSSKNIFRKVERDWKMAYLARLEDTDCGEIAWTFDFSKTNLKVKSYNLVFETKTFGDGKISVTVDATDGSASVENATGFKIVAKLTGGKGDVAWQHTQLFRQSLNSRDYPFDLQVQLH", "sequence_length": 631, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ee6237011fe6af412dcf5cf54b64aa51cf4b20c5a52fabc62bd5f898deb9c408", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7KRR5.json", "taxon_id": "7227", "uniprot_accession": "Q7KRR5", "uniprot_release": "2026_03" }, { "evidence_scope": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01841", "PF04721", "PF09409" ], "protein_name": "Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "2d08f57524e313b968e075a8585b4ff6632c2a6159c78c05f8abbc49d2b8727e", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAAAALGSSSGSASPAVAELCQNTPETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIAIERSSRLDGSNKSHKVKSSQQPAASTQLPTTPSSNPSGLNQHTRNRQGQSSDPPSASTVAADSAILEVLQSNIQHVLVYENPALQEKALACIPVQELKRKSQEKLSRARKLDKGINISDEDFLLLELLHWFKEEFFHWVNNVLCSKCGGQTRSRDRSLLPSDDELKWGAKEVEDHYCDACQFSNRFPRYNNPEKLLETRCGRCGEWANCFTLCCRAVGFEARYVWDYTDHVWTEVYSPSQQRWLHCDACEDVCDKPLLYEIGWGKKLSYVIAFSKDEVVDVTWRYSCKHEEVIARRTKVKEALLRDTINGLNKQRQLFLSENRRKELLQRIIVELVEFISPKTPKPGELGGRISGSVAWRVARGEMGLQRKETLFIPCENEKISKQLHLCYNIVKDRYVRVSNNNQTISGWENGVWKMESIFRKVETDWHMVYLARKEGSSFAYISWKFECGSVGLKVDSISIRTSSQTFQTGTVEWKLRSDTAQVELTGDNSLHSYADFSGATEVILEAELSRGDGDVAWQHTQLFRQSLNDHEENCLEIIIKFSDL", "sequence_length": 654, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2d08f57524e313b968e075a8585b4ff6632c2a6159c78c05f8abbc49d2b8727e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96IV0.json", "taxon_id": "9606", "uniprot_accession": "Q96IV0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/paw-pf04721.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04721", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/paw-pf04721.yaml" } ], "pfam_ids": [ "PF01841", "PF04721", "PF09409" ], "protein_name": "Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASATLGSSSSSASPAVAELCQNTPETFLEASKLLLTYADNILRNPSDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIAIERSSRLDGSSKKVQFSQHPAAAKLPLEQSEDPAGLIRHSGNQTGQLPSLPSAPMVVGDSTILKVLQSNIQHVQLYENPVLQEKALTCIPVSELKRKAQEKLFRARKLDKGTNVSDEDFLLLELLHWFKEEFFRWVNNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNNPEKLLETRCGRCGEWANCFTLCCRALGFEARYVWDYTDHVWTEVYSPSQQRWLHCDACEDVCDKPLLYEIGWGKKLSYIIAFSKDEVVDVTWRYSCKHDEVMSRRTKVKEELLRETINGLNKQRQLSLSESRRKELLQRIIVELVEFISPKTPRPGELGGRVSGSLAWRVARGETGLERKEILFIPSENEKISKQFHLRYDIVRDRYIRVSDNNINISGWENGVWKMESIFRKVEKDWNMVYLARKEGSSFAYISWKFECGSAGLKVDTVSIRTSSQSFESGSVRWKLRSETAQVNLLGDKNLRSYNDFSGATEVTLEAELSRGDGDVAWQHTQLFRQSLNDSGENGLEIIITFNDL", "sequence_length": 651, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ff3cf8145d6ca8fada39dc5771ea91a7946fa091e1ee8664b3ee9473ba043046", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JI78.json", "taxon_id": "10090", "uniprot_accession": "Q9JI78", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/paw-pf04721.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04721", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/paw-pf04721.yaml" } ], "pfam_ids": [ "PF00085", "PF01841", "PF04721" ], "protein_name": "Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPVTEVGSLPELNNILERSDANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQHYSPTPANPNAASDSEKRFLEQFVKCSNVPRSYQDEVFKALARSVMPEELVGRAMTEGPRDEKAILKDLLHWFKTQFFTWFDRPTCPKCTLKCSTDGLQGTPTREEQKEGGASRVEVYICDGCNTEMRFPRYNNPAKLLQTRTGRCGEWANCFGLLLAALNLESRFIYDTTDHVWNEVYLLAEQRWCHVDPCENTMDRPLLYTRGWGKTLGYCIGYGSDHVVDVTWRYIWDSKKLVTQRNEVRQPVFENFLSKLNSRQAEGQTEPRKRELAVRRVCELMEMMAQEAKNHKIGWEKIGDDLGGRITGSEEWRRERGELGESGPKLLAEPIKLAPPTGPAQNYLEFNYDVITDTYSQPPEIGFSAQAFELENVQRVEETDWNMTYLCRKRGDAPGNISWHFDLKSLKKSIEKIEIRMAGIQKFEKGKAMAIACLGDSCMRLPIDCSALTIEDPKNAEILKITATLSGGEGAIGFQQAQIFRTELKRGGGARTESFSVKIWMKN", "sequence_length": 606, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c1cfb03f7fcd08673aadf41c0fd83ddc0e1b76d0a491b93680fe88da4851e912", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9TW67.json", "taxon_id": "6239", "uniprot_accession": "Q9TW67", "uniprot_release": "2026_03" } ], "pfam_id": "PF04721", "short_name": "PAW", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 14, "discovery_scanned": true, "example_count": 14, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/elmo-domain-ipr006816.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006816", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/elmo-domain-ipr006816.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/elmo.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51335", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/elmo.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q09292", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04727" ], "protein_name": "ELMO domain-containing protein elmd-1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "34418688c642e1d6521b4d515b3fbba65690c567d56451020e774b25633c7739", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEAEPLETEQDEWRKERMRVLDEWCEIELKGADALKMDVTREPGSPTVAVAPETSLQDLYPLLIATSSSNAPPSATPTDDVTDPEVQVVSRESIDNRSTFNRIIDVCLCRPVKSQMGPKAYTDKTLILKLAQIPYDHENGTHWLLLSDYFNNVSRSLMTSSEYSHVTNPSRVGAHWVTVGFQSATPHTDFRGCGVLGLLQMHTFTQRVPANLLRAIVLLATTEPNDFPLAVVSINITSILLTQLKKGALDNFGNEIEGLYPFFSALHASAMCRFCSIYKSQKCTLANTQTIFSEITRQLEKSPLSLIMLLNPTNDELINTLL", "sequence_length": 322, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "34418688c642e1d6521b4d515b3fbba65690c567d56451020e774b25633c7739", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q09292.json", "taxon_id": "6239", "uniprot_accession": "Q09292", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/elmo-domain-ipr006816.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006816", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/elmo-domain-ipr006816.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/elmo.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51335", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/elmo.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q3V1U8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04727" ], "protein_name": "ELMO domain-containing protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d7415460f8aa17ce6286b7fab27177a2d94781cae7e9dbd0c7ade03d42046707", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKHFLRMLIQVCLYFYCKFLWRCMKFVMRKLTGRCELQRICYGTKPGASRTMKIETSLRDSKSKLLQTSVSVHPDAIEKTIDDIMELKKINPDINPQLGISLQACLLQIVGYRNLIADVEKLRREPYDSDNPQHEEMLLKLWELLKPNTPLESRVSKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATVAQQVLSDSVHPKCSKFSKIEWEKKKMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDMALCPHFAASEGLINM", "sequence_length": 326, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d7415460f8aa17ce6286b7fab27177a2d94781cae7e9dbd0c7ade03d42046707", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3V1U8.json", "taxon_id": "10090", "uniprot_accession": "Q3V1U8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/elmo-domain-ipr006816.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006816", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/elmo-domain-ipr006816.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/elmo.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51335", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/elmo.yaml" } ], "pfam_ids": [ "PF04727" ], "protein_name": "ELMO domain-containing protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFVSLWEFFYGHFFRFWMKWLLRQMTGKCELQRIFDTYGGAQRTYRIENSLTYSKNKVLQNATRVAQSELDRCIANIMKEKNICSEKDTSFQICMRTCLLQITGYKQLYHDVENVRKKPYDSANAQHEKMLLKLWSLLMPTKKLTARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKLGYSYAIVGINLTEMAYSLLKSEALKLHLYNFVPGVPTMEHFHQFYCYLVYEFDKFWLEEEPESIMYFNLYREKFHERIKGLLMDCNAVLTLKT", "sequence_length": 293, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "176031d27db0593e768be15190fb4cafa16f0d854e156b4f3d8ba06198edb35e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BGF6.json", "taxon_id": "10090", "uniprot_accession": "Q8BGF6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/engulfment-and-cell-motility-protein-1-pleckstrin-homology-ph-domain-d-cd13359.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13359", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/engulfment-and-cell-motility-protein-1-pleckstrin-homology-ph-domain-d-cd13359.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/6-10-10-90-6-10-10-90.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.10.10.90", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-10-10-90-6-10-10-90.yaml" } ], "pfam_ids": [ "PF04727", "PF11841", "PF16457" ], "protein_name": "Cell death abnormality protein 12", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFHMPLKELQPVDTSLPEHVVKGAVVIDKEFTIWNHRAVIPSNALHTVFITINLLEQKLTDVVKMAARSMNLSEDDSYGLMADKPKRFITDDNLNSLGSGFILTLCASPDHYVKRITEILTEGNNISQMENAVKTLDEFSLDPALIEAFYRCSSLELLFSLIRDDRVCMSSTLLSTCLRALSSMLELAVGDFTWKSVPNDVVVSMASLVTGKAKREEANTLLAALQMLEQLVIGDDTTRDWILEEVPIETLIRHVEKSDERIALCALSLMNSMIRRCPDDEKRFELIKSLEVVPFRNAVHSSLLRGGGGVRNLNAIEQLVEVQRSLISAYETSPPTDAEVQKILDIESSEDVSEEIREMWKSQIGEHRCGRLAAISMVQFAEKSPQDLRMLISENTMRIEGGKWQLIPMWMRCCDIAAELFRVIPGRDELDRLIVVLFSTETPFPAVFACIVHLFHRTWREMQAKGGEMEKVACVVLEQLRHVLKRREIQDVEELSADLETFSYRAMQEIWREEQLGKENIQLHSEAVIQLKSKLRPKMEELVRINHLNYLKLGAVFRKPQKSKSLAKLAFWHWKLDASEKMLTITGCDGENYVEGVQRDDIRQVWIKDIADVTNNDEIDRKASSSRFTSSPSTQMLRGIRVQLKTTNDMKEGEVLMALTSDETQSVIWLEGLAELIGSKAVKSETDAMVERMLKMELRVRLLNVKLTNPEEKPEIPPIPDDIKSFISKF", "sequence_length": 731, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "563f67a75bf3dc90be53174d2490e27b298a4e40ec70eb9d76683e2c02cd224d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8STE5.json", "taxon_id": "6239", "uniprot_accession": "Q8STE5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/stereocilium-maintenance-go0120045.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0120045", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/stereocilium-maintenance-go0120045.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/elmo-domain-ipr006816.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006816", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/elmo-domain-ipr006816.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/elmo.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51335", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/elmo.yaml" } ], "pfam_ids": [ "PF04727" ], "protein_name": "ELMO domain-containing protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSETSCSFFIEKEFQDGQLENVSAGLSSSYKDKGALMAFRGIPISELTNHGILQALTAETNGWQPGVVSEEVLRAQEEWEVVDTIHPDIESGVHCQQPGQLISFNEALEHFQSVDLSSFKKRIQPTIQRTGLAALRHCLFGPPKLHQGLREERDLVLTIAQCGLDSQNPTHGRVLQTIYKKLTGSKFDCALHGDHWEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTFLMAQEIFRLSHHHIQQFPFCLMSVNITRIAIQALREECLSRECNRRQKVIPVVNSFYAATFLHLARVWRTQQKTILDSGFVLKDLEALAKKSPKRLLKTLDDYLAQVSKGQTSLLEAHKRPGSQGPHSRDLTFTGVCDLQSHSFESAGLI", "sequence_length": 381, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "56b6ee65d7e219acb8aa5b9647eb1ce881f60e3afe2d8685495645be5f00193e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91YP6.json", "taxon_id": "10090", "uniprot_accession": "Q91YP6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/elmo-n-pf26964.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26964", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/elmo-n-pf26964.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/elmo-ced12-pf04727.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04727", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/elmo-ced12-pf04727.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/elmo-arm-pf11841.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11841", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/elmo-arm-pf11841.yaml" } ], "pfam_ids": [ "PF04727", "PF11841", "PF16457", "PF26964" ], "protein_name": "Engulfment and cell motility protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPPADIVKVAIEWPGAYPKLMEIDQKKPLSAIIKEVCDGWSLANHEYFALQHADSSNFYITEKNRNEIKNGTILRLTTSPAQNAQQLHERIQSSSMDAKLEALKDLASLSRDVTFAQEFINLDGISLLTQMVESGTERYQKLQKIMKPCFGDMLSFTLTAFVELMDHGIVSWDTFSVAFIKKIASFVNKSAIDISILQRSLAILESMVLNSHDLYQKVAQEITIGQLIPHLQGSDQEIQTYTIAVINALFLKAPDERRQEMANILAQKQLRSIILTHVIRAQRAINNEMAHQLYVLQVLTFNLLEDRMMTKMDPQDQAQRDIIFELRRIAFDAESEPNNSSGSMEKRKSMYTRDYKKLGFINHVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKHECPFGRSSIELTKMLCEILKVGELPSETCNDFHPMFFTHDRSFEEFFCICIQLLNKTWKEMRATSEDFNKVMQVVKEQVMRALTTKPSSLDQFKSKLQNLSYTEILKIRQSERMNQEDFQSRPILELKEKIQPEILELIKQQRLNRLVEGTCFRKLNARRRQDKFWYCRLSPNHKVLHYGDLEESPQGEVPHDSLQDKLPVADIKAVVTGKDCPHMKEKGALKQNKEVLELAFSILYDSNCQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSMEIKLRLLDLENIQIPDAPPPIPKEPSNYDFVYDCN", "sequence_length": 727, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "32f23fc0940d1a7af852095c6cb0e7934875c428ed8ad7cfd5163a84f53c2606", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q92556.json", "taxon_id": "9606", "uniprot_accession": "Q92556", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/engulfment-and-cell-motility-protein-1-pleckstrin-homology-ph-domain-d-cd13359.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13359", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/engulfment-and-cell-motility-protein-1-pleckstrin-homology-ph-domain-d-cd13359.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/elmo-armadillo-like-helical-domain-ipr024574.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024574", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/elmo-armadillo-like-helical-domain-ipr024574.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/6-10-250-810-6-10-250-810.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.10.250.810", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-10-250-810-6-10-250-810.yaml" } ], "pfam_ids": [ "PF04727", "PF11841", "PF16457", "PF26964" ], "protein_name": "Engulfment and cell motility protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPPRNVVKIAIKMRDAIPQLIQLDQAKPLAAVLKEVCDAWSLTHSERYALQFADGHRRYITENNRAEIKNGSILCLSTAPDLEAEQLLGGLQSNSPEGRREALRRLVPLASDMIFAREVISRNGLQILGTIIEDGDDLGEVLALSLRAFSELMEHGVVSWETLSIPFVRKVVCYVNMNLMDASVPPLALGLLESVTLSSPALGQLVKSEVPLDRLLVHLQVMNQQLQTKAMALLTALLQGASPVERKHMLDYLWQRNLRQFIYKNIIHSAAPMGDEMAHHLYVLQALMLGLLEPRMRTPLDPYSQEQREQLQVLRQAAFEVEGESSGAGLSADRRRSLCAREFRKLGFSNSNPAQDLERVPPGLLALDNMLYFSRNAPSAYSRFVLENSSREDKHECPFARGSIQLTVLLCELLRVGEPCSETAQDFSPMFFGQDQSFHELFCVGIQLLNKTWKEMRATQEDFDKVMQVVREQLARTLALKPTSLELFRTKVNALTYGEVLRLRQTERLHQEGTLAPPILELREKLKPELMGLIRQQRLLRLCEGTLFRKISSRRRQDKLWFCCLSPNHKLLQYGDMEEGASPPTLESLPEQLPVADMRALLTGKDCPHVREKGSGKQNKDLYELAFSISYDRGEEEAYLNFIAPSKREFYLWTDGLSALLGSPMGSEQTRLDLEQLLTMETKLRLLELENVPIPERPPPVPPPPTNFNFCYDCSIAEP", "sequence_length": 720, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "16fcb180a598b03da05068c96027b670d5e758297e90a1dd38532c21a11fe41f", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q96BJ8.json", "taxon_id": "9606", "uniprot_accession": "Q96BJ8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/elmo-domain-ipr006816.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006816", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/elmo-domain-ipr006816.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/elmo-ced12-pf04727.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04727", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/elmo-ced12-pf04727.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/elmo.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51335", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/elmo.yaml" } ], "pfam_ids": [ "PF04727" ], "protein_name": "ELMO domain-containing protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNEKSCSFHSKEELRDGQGERLSAGYSPSYDKDKSVLAFRGIPISELKNHGILQALTTEAYEWEPRVVSTEVVRAQEEWEAVDTIQPETGSQASSEQPGQLISFSEALQHFQTVDLSPFKKRIQPTIRRTGLAALRHYLFGPPKLHQRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTLPMAQEIFRLSRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWRTQRKTISDSGFVLKELEVLAKKSPRRLLKTLELYLARVSKGQASLLGAQKCYGPEAPPFKDLTFTGESDLQSHSSEGVWLI", "sequence_length": 381, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "88342b62e6d6d66c511b6f0405f83fd7a363265ce25adf64e0671d35c01b9713", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96FG2.json", "taxon_id": "9606", "uniprot_accession": "Q96FG2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/engulfment-and-cell-motility-protein-1-pleckstrin-homology-ph-domain-d-cd13359.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13359", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/engulfment-and-cell-motility-protein-1-pleckstrin-homology-ph-domain-d-cd13359.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/elmo-armadillo-like-helical-domain-ipr024574.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024574", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/elmo-armadillo-like-helical-domain-ipr024574.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/elmo-n-pf26964.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26964", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/elmo-n-pf26964.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ph-12-pf16457.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16457", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ph-12-pf16457.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/elmo-ced12-pf04727.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04727", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/elmo-ced12-pf04727.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/elmo-arm-pf11841.yaml", 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"source_url": "https://rest.uniprot.org/uniprotkb/Q6DBD7.json", "taxon_id": "3702", "uniprot_accession": "Q6DBD7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mucilage-pectin-biosynthetic-process-go0048358.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0048358", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mucilage-pectin-biosynthetic-process-go0048358.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/rhamnogalacturonan-i-biosynthetic-process-go0010246.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010246", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/rhamnogalacturonan-i-biosynthetic-process-go0010246.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tod1-muci70-glycosyltransferase-like-domain-ipr048354.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tod1-muci70-glycosyltransferase-like-domain-ipr048354.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tod1-muci70-pf04765.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04765", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tod1-muci70-pf04765.yaml" } ], "pfam_ids": [ "PF04765" ], "protein_name": "Probable hexosyltransferase MUCI70", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGLGVRSSSYGSLEKTGLNGVVLPIQITTTTRTKPSKMQKDREGIVHWICKFAGRKKVGMLLLFLISAVVFLRVLYVGKGEDSQEGQGPPSLHFNGSSGVNYSNMLQTNEELNMNIGNISFKAKEVIVFPPPPIHFLGYSLPQGHPCNSFTLPPPPADRKRTGPRPCPVCYLPVEEAVALMPNAPSFSPVLKNLTYIYEEPLNRETEFGGSDFGGYPTLKHRNDSFDIKETMSVHCGFVKGPQPGRNTGFDIDEADLLEMKQCRGIVVASAVFDAFDDVKAPQNISKYAEETVCFYMFVDEETESILKRERGLDGNKKVGIWRVVVVHNLPYSDGRRNGKVPKLLVHRMFPNARYSLWIDGKLELVVDPYQILERFLWRKNATFAISRHYKRFDVLVEAEANKAAGKYDNASIDFQVDFYKNEGLTPYSVAKLPITSDVPEGCVILREHVPISNLFTCLWFNEVDRFTSRDQISFSTVRDKIAAKTNWTVSMFLDCERRNFVVQRYHRAEQERFARQRPPVPNFPPPPPSPPPPVLISSDLPRKMSSGRATPPRRRGRDRRSGQRGHRKANLPVRLPDSA", "sequence_length": 581, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a0df179805fb429ce3f3359576fafa8d4a936b413351d360870b3a05aba4f589", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FZ97.json", "taxon_id": "3702", "uniprot_accession": "Q9FZ97", "uniprot_release": "2026_03" } ], "pfam_id": "PF04765", "short_name": "TOD1_MUCI70", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/argc.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01224", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/argc.yaml" } ], "pfam_ids": [ "PF00696", "PF01118", "PF04768", "PF22698" ], "protein_name": "Protein arg11, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLIELQQIVKSGLVRNGAKHCTKRSLLCSNASVIASKRFQGSFAPGQQQPLNPLAKPIEQDRDAIIRILSSIGSRREVEQYLRYFTSFEAQRFAIIKVGGAIITDELDTLAQSLAFLNHVGLYPIVVHGAGPQLNKILASRNVEPEYSDGIRITDAETLSVARKVFLEENAKLVDALEKLGTRARPITGGVFQAEYLDKEKYKYVGKIVKVNKAPIEHSIRAGTLPILTSMAETASGQLLNVNADITAGELARVLKPLKVVYLNEKGGLINGETKKKISSIYLDREYDGLMKQPWVKYGTKLKIKEIKELLDTLPRTSSVAIISTKDLQKELFTESGAGTLISRGFVINKHDSLDSIPDAALENLIIQKNSLAAPSESLKQFKDTLKDRKLRIYSDSFNESVAIVDTTDSSLPVLLAFGAADNNWLNNVVDSILTTLKADFPSLLWRLQPSAKNLEWFFSKSEGTLFANNFYYFWYGVKDLNKISKFIQSDKPFADAIIQTQSTKPPTASSTTNNPSSSQINQKRSYSTSSLFSKNKKMNRSLFLKGGKRFFSAEAQKTQKPLKAVSSKPAKVVLLGARGYTGKNLIGLINTHPYLELSHVSSRELEGTKLPGYTKKEIQYVNLSTDDVKKLEEEGAVDAWVMALPNGVCKPYVDALTSANGKSVIVDLSADYRFEPSWQYGLPELNDREALRNSKRISNPGCYATGSQVGLTPILSLIDGQPSIFGVSGYSGAGTKPSPKNDLNVLTNNLIPYSLTDHIHEREISYRLKQPVAFIPHVAQWFQGITLTINVPLKKSITSRELRNLYQDRYNGEPLIHVQGDVPLVKDNAHKHHVSVGGFGVHSSGKRAVIVVTIDNLLKGAATQALQNLNLSCGYDEYAGIHLD", "sequence_length": 885, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c2ca2af5449f0e34467e91d3d3120cb38e1308352afffd26919d311b2f6df973", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P31318.json", "taxon_id": "284812", "uniprot_accession": "P31318", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "P40360", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/l-arginine-biosynthesis-ii-acetyl-cycle.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "gomodel:YeastPathways_ARGSYNBSUB-PWY", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/l-arginine-biosynthesis-ii-acetyl-cycle.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/l-glutamate-n-acetyltransferase-activity-acting-on-acetyl-coa-as-donor-go0004042.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0004042", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/l-glutamate-n-acetyltransferase-activity-acting-on-acetyl-coa-as-donor-go0004042.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vertebrate-like-nags-gcn5-related-n-acetyltransferase-gnat-domain-ipr006855.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006855", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vertebrate-like-nags-gcn5-related-n-acetyltransferase-gnat-domain-ipr006855.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nat-pf04768.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04768", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nat-pf04768.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/gnat-nags.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51731", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/gnat-nags.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P40360", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04768" ], "protein_name": "Amino-acid acetyltransferase, mitochondrial", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "36a220d2dd8a527aa2a5e1f6db0b6b78162575fb4bca0c400aa274d16d53015a", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MWRRIFAHELKYDQPNASSKNLILSVLNTTATKREAKDYLSKYTNDSGQHNHCLFFIRDLHKVAPAILSQFSSVIKRLGMLGLRPMFVIPPSPTHVNIQAELLDSIVTEADLKPLHLKEGLTKSRTGLYHSVFSQESRFFDIGNSNFIPIVKPYVYNEETASEFMTKDVVKFMDCLCQGNIPHIDKFFILNNAGGIPSGERNDNAHVFINLSQELEHLSSSLSHNISTLTKREPRSQNLLHRMEVYVKKDEISSLECEYHDHLENLLLMDKVLSNLAATATGLITTVKAAALSSDRKNPLVYNLLTDRSLISSSLPRFKKKDGEIDSPANMFDDHAWYELPSQQVNAAPSNSDAVLVTTVLKKGVHIKTYDYKTLTQFNSIGLPKKFHVPEKGAKPSSNSPKLDINKFKSIIDQSFKRSLDLHDYIKRINGKIATIIVIGDYEGIAILTYEGSEENSFVYLDKFAVLPHLKGSLGISDIIFNLMFKKFPNEILWRSRKDNVVNKWYFQRSVAVLDLSIDLDPEHCDEKQSQFKLFYYGNPQYAKRALRDKKRLREFMRSVRDIKPSWENEKNIS", "sequence_length": 574, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "36a220d2dd8a527aa2a5e1f6db0b6b78162575fb4bca0c400aa274d16d53015a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40360.json", "taxon_id": "559292", "uniprot_accession": "P40360", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "Q01217", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/l-arginine-biosynthesis-ii-acetyl-cycle.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "gomodel:YeastPathways_ARGSYNBSUB-PWY", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/l-arginine-biosynthesis-ii-acetyl-cycle.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/argc.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01224", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/argc.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nat-pf04768.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04768", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nat-pf04768.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q01217", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00696", "PF01118", "PF04768", "PF22698" ], "protein_name": "Protein ARG5,6, mitochondrial", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "14db0060ca95fcbcf2d4cf9248d57ce01d8d101b549a1ec0e1d3a585e5670528", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPSASLLVSTKRLNASKFQKFVSSLNKSTIAGFASVPLRAPPSVAFTRKKVGYSKRYVSSTNGFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRGYKLVKRSSIGEFPSADALRKALQRDAGISSGKESVASYLRYLENSDFVSYADEPLEAVAIVKKDTNVPTLDKFVCSDAAWLNNVTDNVFNVLRRDFPALQWVVSENDANIAWHFDKSQGSYLKGGKVLFWYGIDDINTISELVENFVKSCDTASTLNSSASSGVFANKKSARSYSTRSTPRPEGVNTNPGRVALIGARGYTGKNLVSLINGHPYLEVAHVSSRELKGQKLQDYTKSEIIYESLQIQDIRKLEEQNAVDFWVMALPNKVCEPFVETIQSVHGKSKIIDLSADHRFVSESDWAYGLPELNDRAKIANAAKIANPGCYATGSQLTISPLTKYINGLPTVFGVSGYSGAGTKPSPKNDPKFLNNNLIPYALSDHIHEREISARIGHNVAFMPHVGQWFQGISLTVSIPIKKGSLSIDEIRKLYRNFYEDEKLVHVIDDIPLVKDIEGTHGVVIGGFKLNDAEDRVVVCATIDNLLKGAATQCLQNINLAMGYGEYAGIPENKIIGV", "sequence_length": 863, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "14db0060ca95fcbcf2d4cf9248d57ce01d8d101b549a1ec0e1d3a585e5670528", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q01217.json", "taxon_id": "559292", "uniprot_accession": "Q01217", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyostelium discoideum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/argc.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01224", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/argc.yaml" } ], "pfam_ids": [ "PF00696", "PF01118", "PF04768", "PF22698" ], "protein_name": "Bifunctional protein argC, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": 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"7a8137c74b420abf7206f510c786a256fffc7f1b1a05c1f955bc187fa62f5c6b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q54M18.json", "taxon_id": "44689", "uniprot_accession": "Q54M18", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/l-glutamate-n-acetyltransferase-activity-acting-on-acetyl-coa-as-donor-go0004042.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0004042", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/l-glutamate-n-acetyltransferase-activity-acting-on-acetyl-coa-as-donor-go0004042.yaml" }, { 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/gnat-nags.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51731", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/gnat-nags.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8N159", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00696", "PF04768" ], "protein_name": "N-acetylglutamate synthase, mitochondrial", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ca57639c7312c228ef076f053ab7ee4dc0195072dd0c37e72ad15fac32e06e0b", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MATALMAVVLRAAAVAPRLRGRGGTGGARRLSCGARRRAARGTSPGRRLSTAWSQPQPPPEEYAGADDVSQSPVAEEPSWVPSPRPPVPHESPEPPSGRSLVQRDIQAFLNQCGASPGEARHWLTQFQTCHHSADKPFAVIEVDEEVLKCQQGVSSLAFALAFLQRMDMKPLVVLGLPAPTAPSGCLSFWEAKAQLAKSCKVLVDALRHNAAAAVPFFGGGSVLRAAEPAPHASYGGIVSVETDLLQWCLESGSIPILCPIGETAARRSVLLDSLEVTASLAKALRPTKIIFLNNTGGLRDSSHKVLSNVNLPADLDLVCNAEWVSTKERQQMRLIVDVLSRLPHHSSAVITAASTLLTELFSNKGSGTLFKNAERMLRVRSLDKLDQGRLVDLVNASFGKKLRDDYLASLRPRLHSIYVSEGYNAAAILTMEPVLGGTPYLDKFVVSSSRQGQGSGQMLWECLRRDLQTLFWRSRVTNPINPWYFKHSDGSFSNKQWIFFWFGLADIRDSYELVNHAKGLPDSFHKPASDPGS", "sequence_length": 534, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ca57639c7312c228ef076f053ab7ee4dc0195072dd0c37e72ad15fac32e06e0b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N159.json", "taxon_id": "9606", "uniprot_accession": "Q8N159", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/duf619-domain-of-various-n-acetylglutamate-synthases-nags-of-the-urea--cd04265.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd04265", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/duf619-domain-of-various-n-acetylglutamate-synthases-nags-of-the-urea--cd04265.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vertebrate-like-nags-gcn5-related-n-acetyltransferase-gnat-domain-ipr006855.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006855", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vertebrate-like-nags-gcn5-related-n-acetyltransferase-gnat-domain-ipr006855.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nat-pf04768.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04768", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nat-pf04768.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/gnat-nags.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51731", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/gnat-nags.yaml" } ], "pfam_ids": [ "PF04768" ], "protein_name": "N-acetylglutamate synthase, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATAWVATALRSAAAARRLRSPGGPGGSRRLSGSARRRGAKSASPGRRLSTARAHAEDAEGAKGRVQSPAVEEPSWTPLPTPLESPAPPAGRSLVQRDIQAFLNQCGASPGEARHWLTQFQTCYHSVDKPFAVMEVDEEVIRCPQAVSRLAFALAFLQRMDMKPLVVLGLPTPTAPSGCLSFWEAKAQLAQSCKVLVDELRHNAATAVPFFGGGSVLSAAEPAPHASYGGIVAVETDLLQWCLESNSIPILCPIGETAARRSVLLDSLEVTASLAKALQPTKIIFLNNSGGLRNNSQKILSNVNLPADLDLVTNAEWLSIKERQQIRLIVDVLSRLPHYSSAVITAASTLLTELFSNKGCGTLFKNAERMLRVRNLDSLDQGRLVNLVNASFGKKLREDYLESLRPRLHSIYVSEGYNAAAILTVEPVLGGTPYLDKFVVSSSRQGQGSGQMLWECLRRDLQTLFWRSRVTNPINPWYFKHSDGSFSNKQWIFFWFGLADIRDSYELVNHAKGLPDSFCKPASDPGS", "sequence_length": 527, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9942176088f474ad58daf149e179941b15fabd9ad800be9a5a736b6f16a8cec4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R4H7.json", "taxon_id": "10090", "uniprot_accession": "Q8R4H7", "uniprot_release": "2026_03" } ], "pfam_id": "PF04768", "short_name": "NAT", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 13, "discovery_scanned": true, "example_count": 13, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/protein-ms5-pf04776.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04776", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/protein-ms5-pf04776.yaml" } ], "pfam_ids": [ "PF04776" ], "protein_name": "UPF0725 protein At4g17990", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDDEKCREFWSRVAESQGFDVEHLMDDKPKSCLLDYQNSDFDTEVFLNAKLGIHKYNMLQGTNLQLSCIEKCNSRITTVCIGYYITLVAKDPSAGGSLVTFQTKVVHEDYSKINTLTVYLARLKSQPPPDEEIGGAKTGLGSSILGTCIHPCKSVSSKSVETEENVKQPNERLKARNAVFYIRYRYYPNKGRAPKGNGHKPPRDRIAIIKRTMDIQGLLTLEFDTRYAKTLL", "sequence_length": 233, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "92684db6844c6c6de3ccc9bc59c3a8063e231e1cc33e7e6b3481212a2d2ab944", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O49698.json", "taxon_id": "3702", "uniprot_accession": "O49698", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/protein-ms5-pf04776.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04776", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/protein-ms5-pf04776.yaml" } ], "pfam_ids": [ "PF04776" ], "protein_name": "UPF0725 protein At1g19565", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDQTHKKIHWRLGLCKCKNISLVETRESYRSLHPTNQPYRSAIQCSWADDNFVTPEEEYEPSLPSSESPTDSCHADHESPDSPKYQQPAPGERPECEIYKDLCSDPQTVDWAAPPLKIRDGRHQELFLLYAEITLFSHWASIKLVEWAKPLELIYVIVQTWEPKLTMKAKAANANFYVTFSNRHGFPYHAVIRRTTTRIPNQMSLEFKMLMRSK", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "573b0a7e17950f03f596f134592e0abf6bff58774362de74bb7327796e0422b9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C8P5.json", "taxon_id": "3702", "uniprot_accession": "P0C8P5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/tigr01572-family-protein-tigr01572.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/tigr01572-family-protein-tigr01572.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/protein-ms5-pf04776.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04776", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/protein-ms5-pf04776.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5BPN1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04776" ], "protein_name": "UPF0725 protein At3g57210", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d639a47bfdeb134cbeee4572f0c3042a920186c6debbc221816ef45299dbda1b", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQPSSGRRFTFQTSVYEEACGRLVLTSFIAERRRPGTIIKTSLEREFYRMGSLPEFPLENPFENRNRFYVVDDESELRANDWIRLYLELSVAISDRTTTDHDLSGLRIVSVAIQTMEPPSESSLTAKNATVYIRYIDFCKARCGQNLDRIAVVRRNLQ", "sequence_length": 158, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d639a47bfdeb134cbeee4572f0c3042a920186c6debbc221816ef45299dbda1b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5BPN1.json", "taxon_id": "3702", "uniprot_accession": "Q5BPN1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/tigr01572-family-protein-tigr01572.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/tigr01572-family-protein-tigr01572.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/protein-ms5-pf04776.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04776", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/protein-ms5-pf04776.yaml" } ], "pfam_ids": [ "PF04776" ], "protein_name": "UPF0725 protein At3g44770", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADILRQLLDCGKLSDETCHSILCGLGQHVDALHLSKTEEEVDGWTSEEDEELDQEYCRQVTESLGFDIDGKVCIPACGISPVFLGANKNPRSEVALYGRLGVHCFNIDKERKFQYMRIPKYNVQYPEAMSFHITVEVNDLADNSAHTLQNLVTRSFSRNGEDLRVSTGICRIKPKTPEREICLVDEEAIDKFYRGVMPNFVSKLGADDDKLRFYEVQEQDVCANDWLRLYTEFALFSYWRYNEDGFESCLPVEIKKIIVETCDTHREPRMKLKSSNAIFHINFNAKSCDYKSVSRRTTDGKPGHIVLEINTWKLSST", "sequence_length": 318, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "157a26111856856196241c21b70c479b3ad3862b3126981564ddd8dabdfa8654", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5BPP4.json", "taxon_id": "3702", "uniprot_accession": "Q5BPP4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/protein-ms5-pf04776.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04776", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/protein-ms5-pf04776.yaml" } ], "pfam_ids": [ "PF04776" ], "protein_name": "UPF0725 protein At2g19200", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLVSLIPELPLENPFQDATDRFYVLPRLIGTVSNMVWPIKILRVAMETTQDLGACDATFYVRYTDSCQARTGEDADRVAIVRRIWDEQFDVFKIVGRTESYRSLGNGESTTSRETVVHCSKDIDSMEQSDMHDGFDGYVGLYSELTNLGSWLVVIHLNMLIRIVNPIAC", "sequence_length": 169, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "43a187d1ac689cf46261c2081f79b92b795a8b79feca295c93c80cd80565ae3e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q84J62.json", "taxon_id": "3702", "uniprot_accession": "Q84J62", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/tigr01572-family-protein-tigr01572.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/tigr01572-family-protein-tigr01572.yaml" } ], "pfam_ids": [ "PF04776" ], "protein_name": "UPF0725 protein At4g29550", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAVDRPLRIEETTVSHDVSSCGFISKEEWLNKHPPSGSGWTDEDDDNDDVFSSSFISKEELSDAVHNDPPSGWTDEDDDDQVDPALEKEFYRQIRESDGFDVDIRIPTSSLYVYKCANNDDLRGDIVGICARVGLHWYNFQKGSNLELMHVDKYNSRFCALMTYNITAEAVDPANDSRFTFQTCVTRATCQKDEDLRILTEVCRIKPKIQGTGDEIKRWNDEAIDDIYKGNLPEWISDDTLMSCSEQDHFYRVQESDIREHNWLQLYTEIASYSLWEGDMRLKSCVPLQIKNVLVRTREDFKSKEKLKAGNAIFYISFRGVNTPHGPPQDHRAIVRRTVDGIPGHVCLEFKCLLMDL", "sequence_length": 358, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e6aa5507fd514cdd36a78939773bade6b8cc3b95bd1f858c0397aa0e970064f3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LFV1.json", "taxon_id": "3702", "uniprot_accession": "Q8LFV1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/protein-ms5-pf04776.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04776", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/protein-ms5-pf04776.yaml" } ], "pfam_ids": [ "PF04776" ], "protein_name": "UPF0725 protein At2g20625", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVEAYVKQTEALEKKNRIVELMLEREHASSVKSVLETLNGLPGVRMWSPFHKTSIDHLIADEASRQGFIAFPRAEHKRTGEEDLIWDPNAVDDFCRGDMHKWLEEMPNYCYYNCAGEGIGFARQRMALFIYALQRAYLPFEMKKVVVQTREDIESSMKLKASNAIFYMNFKAYGGPQCRGIVRKQVIED", "sequence_length": 190, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8095bc1e449146c590a7ad1a641a834380ac6eee8c1933b62897571f6774fc4f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8S8D8.json", "taxon_id": "3702", "uniprot_accession": "Q8S8D8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/tigr01572-family-protein-tigr01572.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/tigr01572-family-protein-tigr01572.yaml" } ], "pfam_ids": [ "PF04776" ], "protein_name": "UPF0725 protein At1g23970", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTEEESLSAAEEGYNVQRDYWRQAEESDGFDIENIKLPPGMHGRVMGLITYNCQLCYRYPFPVLVKLYAKFGLHRYNLIKGTSFELAALMKFNMLQNYMSSFYMTLLAHDPDPAASSSQKTFQVRVDEQQFGTLGINCSIARPKHEGDLLEVSTKTPFIPHFHGGALGDGIFKGELPDCLSDDALNALMEAVSKDELPEHVLDDALYARAGGIFQGELPDWPSDDALNDGKRFYMLKESEWQATDWISMYLELVITTTDRSITETVQKPEVLSKLEIVKVAIETATKDEEPSNERLKAYRAHFYITFKGLAEPRAPRQVFEIGEHVERQAIVRRVMGHRGDLTLKGKLCGGQYIKRRSLALKSGEESPNCKKQTRVG", "sequence_length": 378, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6534ff66cb9fe2e6a7705280f152d2c1db222ea1a89621c69ffe891a246047d5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q94A88.json", "taxon_id": "3702", "uniprot_accession": "Q94A88", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/tigr01572-family-protein-tigr01572.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/tigr01572-family-protein-tigr01572.yaml" } ], "pfam_ids": [ "PF04776" ], "protein_name": "UPF0725 protein At1g27860", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPTEDRVCFTWEEYARHVREYWRGVAESDGFDSEDIRSPVVLTGLFHYDCQSGRHYPEPLLGTSFELAALLKFNKTMNLTSSYYITLLAHDPSLEKTFQVRVDEREYGSLDLTVAIARPKKDQNEVSDGVFQGPLPDWPSEDALRHDRNRFYELEISEWQATDWISLYLKLLILATDRGMFVQTGLPQVQILEVVIETEEENEKPPDKRLNARRAHVYITFTGLPKSPRLVEIGEHVERKAIIRRVIDASGYLTLLGKFWSGKDTDQQRSMTLPSGEQAESSKKRPRLS", "sequence_length": 289, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9d877d413d6e08c35c712e1f620bb071ba1dc262b53add6deb164f7351ccdaaa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9C6N2.json", "taxon_id": "3702", "uniprot_accession": "Q9C6N2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/protein-ms5-pf04776.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04776", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/protein-ms5-pf04776.yaml" } ], "pfam_ids": [ "PF04776" ], "protein_name": "UPF0725 protein At5g63820", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAWLIMEEEEVDGIPVNEFGRLEIGFDYGFDFTGIVTPPVSTDYDVTLYAKLGLYCYNFQKGTNLKFVRWEKYNTSTGTAYIDNYITLEAMDPSCNSVFSFQTVFSAAGCYNQDTYHVQDWRVLACRPTCGKSVNEYFDRHEAMDPFYTGKMPKWLSDDALAFDNKKYYVVQESDLHENDWLLVFMEMVFLQEKSCVSSSDHKAIIRKTMDGVPEHMSLEIALVK", "sequence_length": 225, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3a4edfa98a88f1701a859e1f0dc378af9a87b954c7b43a034f1f68709bf8aec5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FN07.json", "taxon_id": "3702", "uniprot_accession": "Q9FN07", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/tigr01572-family-protein-tigr01572.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/tigr01572-family-protein-tigr01572.yaml" } ], "pfam_ids": [ "PF04776" ], "protein_name": "UPF0725 protein At3g19520", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSLSVNDRKDFVDGQMKYWRQIAESDGFDIDDVPVPRGTRAGLWSVDCKHPRFRLRACLPKIYAMVGLHRYNLLRGTNFEHLELLKYNESMNCVCSYYITSVAVDLSSQLQKTFQIRVDEKSFGDLDLTVSVARPNDEEKVTTEKRFIHHFHCEAAADDFYKGALPDWPSVGDLNNQKRFYMVKKCELQSNDWIRLYLELAVGVRYQQTSESDLSKLQVLKVAIETKEEDVQPPNRRLKSKSLHVYITFKGLAKAPIGDEIGEHVERKAIVRRVIDERSGHLTLLGGFSNAKNDLNQSSDDEQPFGKRRRI", "sequence_length": 312, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "81ff9669199b38e83f1aa426c91540b9f033e39a05434132499829bf0d2a0c45", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LH42.json", "taxon_id": "3702", "uniprot_accession": "Q9LH42", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/tigr01572-family-protein-tigr01572.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/tigr01572-family-protein-tigr01572.yaml" } ], "pfam_ids": [ "PF04776" ], "protein_name": "UPF0725 protein EMB2204", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRRVEYTLAPPQRNESDGFDYPDGIPISYNLHRLRHFECEGSYPKYPYGSLVKFYAMVGLHRYNVLEGKNLQLDTLKSFNMRINCGASSYYITLAARVPDSGLKQIFQVLVHEERLGSLDMTCTIARPRVTTNVPFLRPHSESEYDYMDNDELPDWPSEIAFDDTKRFHLVKESELRDNDWIRLYLELTLVAHDRFLTVHYLSQLEIVKVAIEEVEQPNASLNTKTTFVYITYKDLAKAQIGEPVDRKAIVRKIINETTGLLRLRGDYWSGERSVITPEEEYMLLHGGEKVRNNEQRSKKLKRRVGVHRLWRWWYQAYKNRGLRSSSY", "sequence_length": 329, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7b0c89e7930f8478cb61520fabf75becdcc1b68ed7ce3072f0c606597e9fec8b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LM50.json", "taxon_id": "3702", "uniprot_accession": "Q9LM50", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/protein-ms5-pf04776.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04776", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/protein-ms5-pf04776.yaml" } ], "pfam_ids": [ "PF04776" ], "protein_name": "UPF0725 protein At4g11700", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPVLYSTGYDLVNLCIGETKKNIKLTEDILDAGMELDFILREYCDSKLPLEEDPFNDDTGRFYVLDKSQIEDNAWILLYLELVVATSFRNHITHGLTSLKILKVAMEISRSPGVSVNMGLDAYDATFYISYKDFCKARVGKEVDRIALVRRILDPQLEILRLGGYTLSSQTIKPSNTMDAGSF", "sequence_length": 183, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "26092147d9183ede62be6e0b4de82fa9de74505c9010b3d8f33a1ff6b1eb6ebb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9T0D7.json", "taxon_id": "3702", "uniprot_accession": "Q9T0D7", "uniprot_release": "2026_03" } ], "pfam_id": "PF04776", "short_name": "protein_MS5", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04780", "short_name": "DUF629", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04781", "short_name": "DUF627", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf630-ipr006868.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006868", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf630-ipr006868.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf632-ipr006867.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf632-ipr006867.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf630-pf04783.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04783", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf630-pf04783.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"MGCAASKLDNEDAVRRCKDRRRLMKEAVYARHHLAAAHADYCRSLRITGSALSSFASGEPLSVSDQTPAVFLHTPPPPLSEQSPAKFVPPRFSPSPAPSSVYPPSTSPSVASSKQPSVMSTSSNRRRKQQPKPRLPHILSESSPSSSPRSERSNFMPNLYPSAYQNSTYSATPSHASSVWNWENFYPPSPPDSEFFNRKAQEKKHNSDNRFNDEDTETVRSEYDFFDTRKQKQKQFESMRNQVEEETETEREEVQCSEWEDHDHYSTTSSSDAAEEEEEDDDRESISEVGTRSEFGSTVRSNSMRRHHQQPSPMPQVYGGAEQSKYDKADDATISSGSYRGGGDIADMKMVVRHRDLKEIIDAIKENFDKAAASGEQVSQMLELGRAELDRSFSQLKKTVIHSSSLLSNLSSTWTSKPPLAVKYRIDTTALDQPNSSKSLCSTLDRLLAWEKKLYEEIKAREGFKIEHEKKLSQLQSQEYKGEDEAKLDKTKASITRLQSLIIVTSQAVTTTSTAIIRLRDTDLVPQLVELCHGFMYMWKSMHQYHETQNSIVEQVRGLINRSGKGESTSELHRQATRDLESAVSSWHSSFSSLIKFQRDFIHSVHAWFKLTLLPVCQEDAANHHKEPLDAYAFCDEWKLALDRIPDTVASEAIKSFINVVHVISAKQADEHKIKKRTESASKELEKKASSVRNLERKYYQSYSMVGVGLPESGPDNQHMLDARDPLSDKKSELAVCQRRVEEEMVKYSKAIEVTRAMTLNNLQTGLPGVFQSLTSFSALFMESLQTVCTRSYSIK", "sequence_length": 796, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f4c959f0685a8ae940d0fe9d825a261993258be8bcbdf83effee024a866dd089", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q93YU8.json", "taxon_id": "3702", "uniprot_accession": "Q93YU8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf630-pf04783.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04783", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf630-pf04783.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf632-pf04782.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04782", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf632-pf04782.yaml" } ], "pfam_ids": [ "PF04782", "PF04783" ], "protein_name": "Protein ROLLING AND ERECT LEAF 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"https://rest.uniprot.org/uniprotkb/Q9AQW1.json", "taxon_id": "39947", "uniprot_accession": "Q9AQW1", "uniprot_release": "2026_03" } ], "pfam_id": "PF04782", "short_name": "DUF632", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf630-ipr006868.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006868", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf630-ipr006868.yaml" }, 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf632-pf04782.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04782", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf632-pf04782.yaml" } ], "pfam_ids": [ "PF04782", "PF04783" ], "protein_name": "Nitrate regulatory gene2 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"https://rest.uniprot.org/uniprotkb/Q93YU8.json", "taxon_id": "3702", "uniprot_accession": "Q93YU8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf630-pf04783.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04783", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf630-pf04783.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"https://rest.uniprot.org/uniprotkb/Q9AQW1.json", "taxon_id": "39947", "uniprot_accession": "Q9AQW1", "uniprot_release": "2026_03" } ], "pfam_id": "PF04783", "short_name": "DUF630", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04784", "short_name": "DUF547", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04788", "short_name": "DUF620", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04789", "short_name": "DUF621", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / 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"data/traits/function/pathway/go/negative-regulation-of-glucose-mediated-signaling-pathway-go1902660.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1902660", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-glucose-mediated-signaling-pathway-go1902660.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pp4r3-evh1-like-domain-ipr055236.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055236", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pp4r3-evh1-like-domain-ipr055236.yaml" }, { 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"url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/evh1-pp4r3-pf22972.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/pp4r3-pf04802.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04802", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/pp4r3-pf04802.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P40164", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04802", "PF22972" ], "protein_name": "Serine/threonine-protein phosphatase 4 regulatory subunit 3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "9dc379b36902ddcfd539b20127ecc15eb83b87da6f84cfd42b5b624f5faf92a3", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSLPGTPTTSPTPMDEDTEQAVSVNTEPKRVKVYILENNEWKDTGTGFCIGEVDEGKFAYLVVSDEDSPTETLLKSKLEGNIEYQRQEETLIVWKDLGGKDIALSFEESMGCDTLCEFIVHVQRNIESNISLVTVKSSDNGLGSVHDIITGPVTLPSNDQQQNSQTLLEALKILNENTSFDFLKNETIEFILQSNYIDTLISHFHKAEEEKIPKDLFLLSNIIKTLILYNKRDILESMVEDDRIMGIVGILEYDTEYPTSKANHRKYLGSKGPNFKEVIPLENEDLKIIMKKCFRLQFLKDVVLVRFLDDHNFNLISEIVMDLETCIIDFLQVGTFLDRLIELYDTKTLPESSSEKEKFVQKRKDGIRLLQQCVQMSINLDAVDRSKFYKTLVRKGLFKVLDYAFHMETDSNVRILATDTIITIIEHDILLIHNVQNEDSFKRQHKSAPDDKSSHRKYPQDYSSSTDSKLLLILSTILLSDRSPGLREQVVQALNTLLHPEGCVGNGEGSYDLMGRSNYEAKNTSEDFPSFSYGLNSDSINLNNYHYSSDEMNNLEPESESEFQVMEYFANFYNKIAPILFGPLIKKDITTEMAEIDGQIEKVTKDDLLLIHLVKLVSFVCTEHDRVLSRRFILENGILDSVSKLIGGNHMMQLRLTAVRCIKNLMCLDDKYYHRYMISKNLYAPVFKLFQENIDKNNLANSCIQDFFRIIITECRAYQSDGHNRKEKTNGSYDGNGNDVKTNVNNNRTNFTILNKYLVQTYGDVLRKATDIPFIQDMLETGEENQPDHSSFENSIEGGNDISVNMSTDGFASNHLEDIDIKNVKRLHSEIEHFENDPHYSGDQLAFKKSVDQMNAST", "sequence_length": 858, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "9dc379b36902ddcfd539b20127ecc15eb83b87da6f84cfd42b5b624f5faf92a3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40164.json", "taxon_id": "559292", "uniprot_accession": "P40164", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pp4r3-evh1-like-domain-ipr055236.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055236", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pp4r3-evh1-like-domain-ipr055236.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"MTWPSEARPNINMEYRLHTVKVYVMMEDKQWKNVGTGQISSKYSEQLQGVCLLVHSLSDGSPIMECKIHPNVPYQKQQGKIIIWSEAKNHGMAIHFQEPNDCQEIWEDICQIQGKDPHVEITQELTDDLETFEHMPLIWNWVEMSNCEIHTLKNIAELFPFVFEMPSQKERLALFLENEGYIKKLLQLFHTCEKLKNMEGLYYLHNIIKGILFLNNTRLFNIMFSDEFFMDIVGCLEYDPALDQPKQYREFLTQNSKFKEVIPIIHSQLRQKIQQTYRMQYVHDIMLPTPSIFQTNLLSDITTMIFFNKINIITMIQEDENFLLEVFSQLKDNSIGDERRIELLLFLKEFCEFAKTLQSQKKNELLKTLIKLGIMSVLKVVVHMNDYQIQVGALDIFAYLVEYSPCLVRAYAMEEAQDSEDNDDLLINIMIKQMICDFDPEFSQGIIMTAVLHELLNPENMRTTAKGCERKVFLNFFYKRYMRKLIAPILSIRVKYDSNDNRVYICPDNYQNAQLLGAVLEILTFCVQYHSMYIKHYIFSNNLLRSILVLMSSKHTFLILCAVRFMRKIIGLKDKMYNHYIIKKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRKENITSLIVNIVENFFRAFKSIEYVQTFKGLKTKYEEEKKRKSQRRKNLHSIMHPKMYYRHIEDMEVKVKADICCRGIIEEEERQGGGEEGAILPMGSDFTNNYDIFMKNKDTNESESAIEGQKIKSSEASECCPSHGDASATRMSRSHCSSLVPLVDYLYDTDDENDDDPYGNDKHEDEHEDEDEEPPPKRPNLST", "sequence_length": 813, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aaa7fc28833fa02f70c1292c506f259ecdba49c9a248e2a567211c5773b1b17a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3V0Y1.json", "taxon_id": "10090", "uniprot_accession": "Q3V0Y1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pp4r3-evh1-like-domain-ipr055236.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055236", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pp4r3-evh1-like-domain-ipr055236.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"MSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFEEMPETSHLIDLPTCELNKLEEIADLVTSVLSSPIRREKLALALENEGYIKKLLQLFQACENLENTEGLHHLYEIIRGILFLNKATLFEVMFSDECIMDVVGCLEYDPALAQPKRHREFLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTPSVFEENFLSTLTSFIFFNKVEIVSMLQEDEKFLSEVFAQLTDEATDDDKRRELVNFFKEFCAFSQTLQPQNRDAFFKTLAKLGILPALEIVMGMDDLQVRSAATDIFSYLVEFSPSMVREFVMQEAQQSDDDILLINVVIEQMICDTDPELGGAVQLMGLLRTLIDPENMLATTNKTEKSEFLNFFYNHCMHVLTAPLLTNTSEDKCEKDFFLKHYRYSWSFICTPSHSHSHSTPSSSISQDNIVGSNKNNTICPDNYQTAQLLALILELLTFCVEHHTYHIKNYIMNKDLLRRVLVLMNSKHTFLALCALRFMRRIIGLKDEFYNRYITKGNLFEPVINALLDNGTRYNLLNSAVIELFEFIRVEDIKSLTAHIVENFYKALESIEYVQTFKGLKTKYEQEKDRQNQKLNSVPSILRSNRFRRDAKALEEDEEMWFNEDEEEEGKAVVAPVEKPKPEDDFPDNYEKFMETKKAKESEDKENLPKRTSPGGFKFTFSHSASAANGTNSKSVVAQIPPATSNGSSSKTTNLPTSVTATKGSLVGLVDYPDDEEEDEEEESSPRKRPRLGS", "sequence_length": 849, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "efd4b6414170a374b77830abb437e38afe1f11899ff4d86e3e66c79abce0390d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5MIZ7.json", "taxon_id": "9606", "uniprot_accession": "Q5MIZ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pp4r3-evh1-like-domain-ipr055236.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055236", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pp4r3-evh1-like-domain-ipr055236.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serine-threonine-protein-phosphatase-4-regulatory-subunit-3-like-centr-ipr006887.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006887", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serine-threonine-protein-phosphatase-4-regulatory-subunit-3-like-centr-ipr006887.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/evh1-pp4r3-pf22972.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22972", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/evh1-pp4r3-pf22972.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/pp4r3-pf04802.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04802", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/pp4r3-pf04802.yaml" } ], "pfam_ids": [ "PF04802", "PF22972" ], "protein_name": "Serine/threonine-protein phosphatase 4 regulatory subunit 3A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQDLVDESEEERFDDMSSPGLELPSCELSRLEEIAELVASSLPSPLRREKLALALENEGYIKKLLELFHVCEDLENIEGLHHLYEIIKGIFLLNRTALFEVMFSEECIMDVIGCLEYDPALSQPRKHREFLTKTAKFKEVIPISDPELKQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEIVGMLQEDEKFLTDLFAQLTDEATDEEKRQELVNFLKEFCAFSQTLQPQNRDAFFKTLSNMGILPALEVILGMDDTQVRSAATDIFSYLVEYNPSMVREFVMQEAQQNDDVSKKLTEQKITSKDILLINLIIEHMICDTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLGFFYKHCMHVLTAPLLANTTEDKPSKDDFQTAQLLALVLELLTFCVEHHTYHIKNYIINKDILRRVLVLMASKHAFLALCALRFKRKIIGLKDEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIRVEDIKSLTAHVIENYWKALEDVDYVQTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYRRDARTLEDEEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERKKLKESEEKEVLLKTNLSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGLVDYPDDDEDDDEDEDKEDTLPLSKKAKFDS", "sequence_length": 833, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "641bec68cbe4fe3c9a70d1fdcc57a185a560a6e2bcee272abfecde3da2bafdc4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6IN85.json", "taxon_id": "9606", "uniprot_accession": "Q6IN85", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pp4r3-evh1-like-domain-ipr055236.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055236", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pp4r3-evh1-like-domain-ipr055236.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serine-threonine-protein-phosphatase-4-regulatory-subunit-3-like-centr-ipr006887.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006887", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serine-threonine-protein-phosphatase-4-regulatory-subunit-3-like-centr-ipr006887.yaml" } ], "pfam_ids": [ "PF04802", "PF22972" ], "protein_name": "Serine/threonine-protein phosphatase 4 regulatory subunit 3A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQDLVDESEEERFDDMSSPGLELPSCELSRLEEIAELVASSLPSPLRREKLALALENEGYIKKLLELFHVCEDLENIEGLHHLYEIIKGIFLLNRTALFEVMFSEECIMDVIGCLEYDPTLSQPRKHREFLTKTAKFKEVIPISDPELKQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEIVGMLQEDEKFLTDLFAQLTDEATDEEKRQELVNFLKEFCAFSQTLQPQNRDAFFKTLSNMGILPALEVILGMDDTQVRSAATDIFSYLVEYNPSMVREFVMQEAQQNDDDILLINLIIEHMICDTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLGFFYKHCMHVLTAPLLANTTEDKPSKDDFQTAQLLALVLELLTFCVEHHTYHIKNYIINKDILRRVLVLMASKHAFLALCALRFKRKIIGLKDEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIRVEDIKSLTAHVIENYWKALEDVDYVQTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYRRDARTLEDEEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERKKLKESEEKEVLLKTNLSGRQSPSFKLSLSSGTKTNLTSQSSATSLPGSPGSPGSPGSPGSPGSVPKSTSQTAAITTKGGLVGLVDYPDDDEDDDEDEDKEDTLPVSKKAKFES", "sequence_length": 820, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1300ac4766f61b9370870109365b49c443817be39a8a52eb8dc19b97b956036e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P2K6.json", "taxon_id": "10090", "uniprot_accession": "Q6P2K6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pp4r3-evh1-like-domain-ipr055236.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055236", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pp4r3-evh1-like-domain-ipr055236.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serine-threonine-protein-phosphatase-4-regulatory-subunit-3-like-centr-ipr006887.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006887", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serine-threonine-protein-phosphatase-4-regulatory-subunit-3-like-centr-ipr006887.yaml" } ], "pfam_ids": [ "PF04802", "PF22972" ], "protein_name": "Protein PPP4R3C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGLRYSVKVYVLNEDEEWNNLGTGQVSSTYDEQFQGMSLLVRSDSDGSVILRSQIPPDRPYGKYQETLIVWYEAENQGLVLKFQDPAGCQDIWKEICQAQGKDPSIQTTVNISDEPEEDFNEMSVISNMVVLPDCELNTLDQIADIVTSVFSSPVTDRERLAEILKNEAYIPKLLQLFHTCENLENTEGLHHLYEIIKGILFLNEACLFEIMFSDECIMDVVGCLEYDPALDQPKRHRDFLTNDAKFKEVIPITNSELRQKIHQTYRLQYIYDILLPVPSIFEDNFLSTLTTFIFSNKAEIVSMLQKDHKFLYEVFAQLKDETTHDDRRCELLFFFKELCSFSQALQPQSKDALFETLIQLGVLPALKIVMIRDDLQVRSAAAVICAYLVEYSPSRIREFIISEAHVCKDSDLFINVIIKQMICDTDPELGGAVHLMVVLHTLLDPRNMLTTPEKSERSEFLHFFYKHCMHKFTAPLLAATSEHNCEEDDIAGYDKSKNCPNDNQTAQLLALILELLTFCIQHHTFYIRSYILNKDLLRKALILMNSKHTHLILCVLRFMRRMICLNDEAYNNYIIKGNLFEPVVNALLDNGTRYNMLNSAILELFEYIRVENIKPLVSHIVEKFYNTLESIEYVQTFKGLKIKYEKERDRQSQIQKNLHSVLQNIVVFRGTIEEIGLEEEICFMEDAGEVVMPPLEDDDEFMETKRTQEGEAVMPPLEDDDKFTETKRTHQEGEAVMPPLEDDDEFMETKRNQEHEGKVDSPKRTSSGDFKFSSSYSACAAIGTGSPSGSSVVRLVDHPDDEEEKEEDEEEKEEDKEDETSPKKKPHLSS", "sequence_length": 832, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "22130f3200b9a188978af2a87fa30c88d3f34b91a63cd38f2f4d7141ee5f2563", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZMV5.json", "taxon_id": "9606", "uniprot_accession": "Q6ZMV5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pp4r3-evh1-like-domain-ipr055236.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055236", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pp4r3-evh1-like-domain-ipr055236.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serine-threonine-protein-phosphatase-4-regulatory-subunit-3-like-centr-ipr006887.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006887", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serine-threonine-protein-phosphatase-4-regulatory-subunit-3-like-centr-ipr006887.yaml" } ], "pfam_ids": [ "PF04802", "PF22972" ], "protein_name": "Serine/threonine-protein phosphatase 4 regulatory subunit 3B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFEEMPETSHLIDLPACELSKLEEIADLVTSVLSSPIRREKLALALENEGYIKKLLQLFQACENLENTEGLHHLYEIIRGILFLNKATLFEVMFSDECIMDVVGCLEYDPALAQPKRHREFLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTPSVFEENFLSTLTSFIFFNKVEIVSMLQEDEKFLSEVFAQLTDEATDDDKRRELVNFFKEFCAFSQTLQPQNRDAFFKTLAKLGILPALEIVMGMDDLQVRSAATDIFSYLVEFSPSMVREFVMQEAQQSDDDVLLINVVIEQMICDTDPELGGAVQLMGLLRTLIDPENMLATTNKTEKSEFLNFFYNHCMHVLTAPLLTNTSEDKCEKDNMLGSNTTNTICPDNYQTAQLLALILELLTFCVEHHTYHIKNYIMNKDLLRRVLVLMNSKHTFLALCALRFMRRIIGLKDEFYNRYITKGNLFEPVINALLDNGTRYNLLNSAVIELFEFIRVEDIKSLTAHIVENFYKALESIEYVQTFKGLKTKYEQEKDRQNQKLNSVPSILRSNRFRRDAKALEEDEEMWFNEDDDEEGKAVITPVEKSKTEDDFPDSYEKFMETKKAKESEDKENLPKRASSGGFKFTFSHSPSATNGTNSTNSKSVVSQTTPASSNVASSKTTSLATSVTATKGNLVGLVDYPDDEEEDEEEESSPRKRPRLGS", "sequence_length": 820, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "07b8a3df042d2902e76ae8b8784e4a6952d1351877fa9dee42e8766700622736", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q922R5.json", "taxon_id": "10090", "uniprot_accession": "Q922R5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/protein-phosphatase-4-complex-go0030289.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030289", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/protein-phosphatase-4-complex-go0030289.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/basal-protein-localization-go0045175.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0045175", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/basal-protein-localization-go0045175.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pp4r3-evh1-like-domain-ipr055236.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055236", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pp4r3-evh1-like-domain-ipr055236.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serine-threonine-protein-phosphatase-4-regulatory-subunit-3-like-centr-ipr006887.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006887", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serine-threonine-protein-phosphatase-4-regulatory-subunit-3-like-centr-ipr006887.yaml" } ], "pfam_ids": [ "PF04802", "PF22972" ], "protein_name": "Serine/threonine-protein phosphatase 4 regulatory subunit 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTDTRRRVKLYALNAERQWDDRGTGHVSSTYVERLKGISLLVRAESDGSLLLESKIQPDTAYQKQQDTLIVWSEGDNFDLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDIVEESEDERFEDMSDTAPPIELPPCELSRLEDISETIQSCLSTPLRKEKLSMALESESYIKKLLNLFHVCEDLDNTEGLHHLFEIFKNIFLLNKNALFEIMFADDTIFDVVGCLEYDPSVSQPKKHRQYLKQLAKFREAVPIKNLDLLAKIHQTFRVQYIQDIILPTPSVFVEDNMLNTLSSFIFFNKVEIVTMIQDDERYLLDVFAVLTDPTTGDAKRRDTVLFLKEFCNYAQNLQPQGKDSFYKTLTCLGILQALELTLVMNDKKTKSASIDILTAIVEFSPLVVRNYTLNQANRPEVERMLLNIAIEQMLNDSEPELGIAVQLMGIVKILLEPENMLTEKGDFLNFFYKYSVQTLVAPVILNTIGDRPQNEDYQTAQLLGIVLDILSFCVEHHSYHIKNFLLQKDLLKRILVLMKSTHTFLVLGALRLLRKIIALKDEFYNRHIVKCNLFAPVVDAFIRNNGRYNLLESAILELFEFIKLEDIRTLCVYFVENFSKIFDEIEYVQTFKYLKNRYDQYQDRLKDRDKMENRTDGGLPIIRSGGRFRRDQRQMEEEEEMWFNEEDDFTEEIDTYNNVMKSVSEKNGPQTQNQQKSSPPHSTSPHSGLLGSLSTTASSTATSATSGAPVASGSSSPEAISADEQTQAAVHLAAAALQHHQQQQQQQQQNPFQQQTQPEIAELQQQLSSVEAPQSQELELSQSAAASASPTSSSSSLEASTSSSSASSSSSSSSSSSPPGSSAAASLCDSATVAAVAASQFLSTIATAMAASVTAAAATNSSPSISPAPAVSSPDIENADAQLPPSDDASSPASGEQDANSTEGTSSEADKTTAKKGLVDYESDSGEDDYEEDEYSEGPQAQKRARQA", "sequence_length": 980, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7056daf4d33be1979675a4cb864c48e158cae90cd733eedeb23eb522352e7868", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VFS5.json", "taxon_id": "7227", "uniprot_accession": "Q9VFS5", "uniprot_release": "2026_03" } ], "pfam_id": "PF04802", "short_name": "PP4R3", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trna-adenine-22-n1-methyltransferase-activity-go0160105.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160105", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trna-adenine-22-n1-methyltransferase-activity-go0160105.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/trmk-pf04816.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04816", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/trmk-pf04816.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-10-287-1890-1-10-287-1890.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.287.1890", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-10-287-1890-1-10-287-1890.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P54471", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04816" ], "protein_name": "tRNA (adenine(22)-N(1))-methyltransferase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6d02909c15eff4de455e1d03e8d5a7454d8639bc90aefc2370dcbb5c6221d9bf", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNELKLSKRLQTVAEYIPNGAVMADIGSDHAYLPCYAVLNHKASGAIAGEITDGPFLSAKRQVEKSGLNSHISVRQGDGLEVIKKGEADAITIAGMGGALIAHILEAGKDKLTGKERLILQPNIHAVHIREWLYKERYALIDEVILEEDGKCYEVLVAEAGDRDAAYDGISLSAGMLVGPFLAKEKNAVFLKKWTQELQHTQSIYEQISQAADTEQNKQKLKELADRMELLKEVIDHG", "sequence_length": 238, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6d02909c15eff4de455e1d03e8d5a7454d8639bc90aefc2370dcbb5c6221d9bf", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P54471.json", "taxon_id": "224308", "uniprot_accession": "P54471", "uniprot_release": "2026_03" } ], "pfam_id": "PF04816", "short_name": "TrmK", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 24, "discovery_scanned": true, "example_count": 24, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/pwwp-domain-found-in-arabidopsis-thaliana-protein-hua2-like-hulk-famil-cd20147.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/pwwp-domain-found-in-arabidopsis-thaliana-protein-hua2-like-hulk-famil-cd20147.yaml" } ], "pfam_ids": [ "PF00855", "PF04818" ], "protein_name": "Protein HUA2-LIKE 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPSRRKGGGKAAAVAAACRKRKVGDLVLAKVKGFPAWPAVVSEPEKWDASPDSKKVFVHFFGTQQIAFCNPGDVEAFTEERKQSLLTRRHAKGSDFVRAVKEIIESYEKLKQQERASDPKSAEEGTLGSAENTTLMPQVIEIPTATSLTQMNSDPSHGRDESTLLNEDASAAEQMLALRDNSGPRNKACDSAVVKEPRKIATYSSRKRNGGVRSQNCAPQNETCPVQRSKSPSRLQTEKLQSSMLQNSDGGQTIDDVEDGALRREKRIRRSSGHSESDDVATSSLNSHGSDEENASEIATVESDNNRNEGNGVDSGSKVEQIDIGGKFLEGDYDLNKGLNFQINIMVKRKKRKPTRKRGTSDVVDPQAKVEGEAVPEAGARNNVQTSQNSHEKFTERPCEENGDEHLPLVKRARVRMSRAFYGNHEANSSLQAEERSPKDTVVSATAQTSPSDIISSHDTFAVEESKFFEVSAKLSGDMVNVAPSPVEKSHDGMSPSEACVQTVREREYAMGWNELSKTPDDKSAGPQYNQVSSLPAGEAQTASVPEAVCPEVLKLLTSESDLPAVQYCQVAKIEPSMDPNTVDSSANNASEICSLSIPSQLSGQDRSNDQDACVSLENSREYLNEEGSKIDACVAQVVQSEAIEHSPSSCLVVNKQETENMPKTVNMLLKEGHGSLGEECAIVEPAQCTPNLPISATESDVIVGENVPLNEIGCTKCEDAVEDSRQLKMIGETNDQKQQVQTNNSVLVSENLSREKMSFSPAITADTPARGTPHSSSVYYHISTSESANDMQNNSSGSPNIPTGEKKNDCDAIVKEEEKIETGVCQGQKVVSCDVQSTRESYEDALCSLVRTKESIGRATCLAMDLMKFGVSAKAMEILAHTLESESNLKRRVDLFFLVDSIAQCSKGLKGDTGCVYLSAIQVILPRLLAAAVPAGATTQENRKQCLKVLKLWLERRILPESIVRHHIRELDSHSIVPACLYSRRSARTERSLDDPVRDMEDMLVDEYGSNSTLQLPGFCMPALLKDEEGGSDSEGGCDSEGGSDSDGGDFESVTPEHESRILEENVSSSTAERHTLILEDVDGELEMEDVAPPWGTENCTHTDQADNTKVSNCQLGQQHRPVFGTSHQHMSLSSPPLPSSSPPPPPAPPSQQGECAMPDSYLNGFENGGYRNVHGDQQAGPLRMNPPLSGSTMHYQGPESSYISGVQLTNSIPQADGSNFQHRPYPSHPHPHPPPPPPPPQHQFSFREPGHVLKSHRDAPSYSHRSHYVPNCDERNFHDNHERMRHAPFENRDNWRYPPSSSYGSRYQDEHKAPYPSSSYNGVRWDNPPRQYNNRPSFHPKPHSEGPAPVGMRDPGMWHQRSD", "sequence_length": 1366, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f01bf51af2ba7db0f2e64edca649b4a0d15393747595f3e12f4da89200ebe45a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/F4IN78.json", "taxon_id": "3702", "uniprot_accession": "F4IN78", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/pwwp-domain-found-in-arabidopsis-thaliana-protein-hua2-like-hulk-famil-cd20147.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/pwwp-domain-found-in-arabidopsis-thaliana-protein-hua2-like-hulk-famil-cd20147.yaml" } ], "pfam_ids": [ "PF00855", "PF04818" ], "protein_name": "Protein HUA2-LIKE 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPSRKRGGGRAAAASSARREWKVGDLVLAKVKGFPAWPAVVDEPEKWGHSADSKKVTVHFFGTQQIAFCNHGDVESFTEEKKQSLLTRRHAKGSDFVRAVKEITESYEKLKQQDQASGPKYAEETTAGSSGNTSQLPQACENLIGSRLDTQIESSSSHGRDELTLLSEDASAAEQMLALRHNTLAHNGACDSAAAKDLCEIATYSSRRRNERVRALKYAPQSIILPVEHSKISSRLELDRVQRSMLQCSDGGPSVNSINGKAIRRRKRIRTSGQSESDDVVSSDLNLHGSDEDNASEIATVESNNNSRNEGNGVDSGSKVEYSDAVGEGCDGGHELNKGLDFHISTMVKRKKRKPTRKRETSDIIDPPAKVEAEGLGPNACDSCQRSQNSHERLNERPCEENGDEHLPLVKRARVRMSRAFYADEKVNASSQVEERSSKDTLLSAALQTSPSVNHENGIGSGHDTSAAEEFNSFELSAKLSGVMVDVVPSHMEKPSDRMSPSVACVQTVGDRQTAVNFHENEFTMTLDDEVTRAQSNQLSSLVETEARVPEVVQGCSEESQTGNCLISETDPIDIQCSHQSEKHETPLNPDIVDSSANKSPGLCSSLDMTTTVVPAQSPHQHKIQEYDSSDHSLVIVGDSLNGKCEKIDYCMTQVVQSQALEPPPPLFCSVVNYQEVENLQETENTLWKENQGSPGKELDSDKQAHMIQNPVLSATESEMIVDDAEPQYETVYSHCADAVENRELEKSCEVDEQKEQMQATNSISVSENFSREKLNSSPARGTPNCNSVCRISTAESENAMQNNSYYSTNVQYGENKSLNVDTVKEESKVETGTTQVKKVVSSDVQCTVESFETALDSLVRTKETIGRATRLAMDLAKFGVSAKAMEILAHTLESESNLQRRVDLFFLVDSIAQCSKGLNGDAGGVYLSSIQAMLPRLLTAAVPAGATTQENRKQCLKVLRLWLERRILPESIVRHHIRELDSLSNVPACLYSRRSARTERALDDPVRDMEGILVDEYGSNSTLQLHGFCIPPILRDEDEGSDSDGGDFESVTPEHESRSLEEHVTPSITERHTRILEDVDGELEMEDVAPPWEGGSSASAITDQADNRESANCLLVPGTSHQNVTSSSPPARPSQNAQLAMSNSYSNGFDYRRNPSMQGDYHAGPPRMNPPMHYGSPEPSYSSRVSLSKSMPRGEGSNFQHRPYPSSHPPPPPPSHHYSYMEPDHHIKSRREGLSYPHRSHYTLEFDERNYQDSYERMRPEPCENRDNWRYHPPSSHGPRYHDRHKGPHQSSSYSGHHRDSGRLQNNRWSDSPRAYNNRHSYHYKQHSEGPVPVGMRDPGTWHQR", "sequence_length": 1347, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f493e7a81b8950b78bef94ba123f6b4e7f3066288d194e63ae6ebea65fb50c4d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4IZM8.json", "taxon_id": "3702", "uniprot_accession": "F4IZM8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:F4KIA8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00076", "PF01805", "PF04818", "PF08312" ], "protein_name": "Protein 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"PTM_REGISTRY_MIRROR", "sequence_sha256": "974fd6937f954fd66a9e4cec8585e11670b9436e616177895c7ed10c1508822f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4KIA8.json", "taxon_id": "3702", "uniprot_accession": "F4KIA8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/cid-ctd-interacting-domain-of-pcf11-pcf11-is-conserved-across-eukaryot-cd16982.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd16982", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/cid-ctd-interacting-domain-of-pcf11-pcf11-is-conserved-across-eukaryot-cd16982.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pcf11-c-terminal-domain-ipr054127.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR054127", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pcf11-c-terminal-domain-ipr054127.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pcf11-charged-region-ipr048832.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048832", "section": "canonical_examples", "url": 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"MAAGGGGGSSKASSSSASSAGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERIFKIWEDRNVYPEEMIVALREALSTTFKTQKQLKENLNKQPNKQWKKSQTSTNPKAALKSKIVAEFRSQALIEELLLYKRSEDQIELKEKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFEEASSKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNLKKKLDQLKSTLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEESQSPTMESEKSATPEPVTDNRDVEDMELSDVEDDGSKIIVEDRKEKPAEKSAVSTSVPTKPTENISKASSCTPVPVTMTATPPLPKPVNTSLSPSPALALPNLANVDLAKISSILSSLTSVMKNTGVSPASRPSPGTPTSPSNLTSGLKTPAPATTTSHNPLANILSKVEITPESILSALSKTQTQSAPALQGLSSLLQSVTGNPVPASEAASQSTSASPANTTVSTIKGRNLPSSAQPFIPKSFNYSPNSSTSEVSSTSASKASIGQSPGLPSTTFKLPSNSLGFTATHNTSPAAPPTEVTICQSSEVSKPKLESESTSPSLEMKIHNFLKGNPGFSGLNLNIPILSSLGSSAPSESHPSDFQRGPTSTSIDNIDGTPVRDERSGTPTQDEMMDKPTSSSVDTMSLLSKIISPGSSTPSSTRSPPPGRDESYPRELSNSVSTYRPFGLGSESPYKQPSDGMERPSSLMDSSQEKFYPDTSFQEDEDYRDFEYSGPPPSAMMNLEKKPAKSILKSSKLSDTTEYQPILSSYSHRAQEFGVKSAFPPSVRALLDSSENCDRLSSSPGLFGAFSVRGNEPGSDRSPSPSKNDSFFTPDSNHNSLSQSTTGHLSLPQKQYPDSPHPVPHRSLFSPQNTLAAPTGHPPTSGVEKVLASTISTTSTIEFKNMLKNASRKPSDDKHFGQAPSKGTPSDGVSLSNLTQPSLTATDQQQQEEHYRIETRVSSSCLDLPDSTEEKGAPIETLGYHSASNRRMSGEPIQTVESIRVPGKGNRGHGREASRVGWFDLSTSGSSFDNGPSSASELASLGGGGSGGLTGFKTAPYKERAPQFQESVGSFRSNSFNSTFEHHLPPSPLEHGTPFQREPVGPSSAPPVPPKDHGGIFSRDAPTHLPSVDLSNPFTKEAALAHAAPPPPPGEHSGIPFPTPPPPPPPGEHSSSGGSGVPFSTPPPPPPPVDHSGVVPFPAPPLAEHGVAGAVAVFPKDHSSLLQGTLAEHFGVLPGPRDHGGPTQRDLNGPGLSRVRESLTLPSHSLEHLGPPHGGGGGGGSNSSSGPPLGPSHRDTISRSGIILRSPRPDFRPREPFLSRDPFHSLKRPRPPFARGPPFFAPKRPFFPPRY", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/cid-ctd-interacting-domain-of-regulation-of-nuclear-pre-mrna-domain-co-cd17001.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rprd2-cid-domain-ipr047885.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR047885", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rprd2-cid-domain-ipr047885.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/6-10-250-2560-6-10-250-2560.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.10.250.2560", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-10-250-2560-6-10-250-2560.yaml" } ], "pfam_ids": [ "PF04818" ], "protein_name": "Regulation of nuclear pre-mRNA domain-containing protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAGGGGGSSKASSSSASSAGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSIERIFKIWEDRNVYPEDMIVALREALMDRAASHNARLQKLQCFPGTTFKTQKQLKENLNKQPNKQWKKSQTSTNPKAALKSKIVAEFRSQALIEELLMYKRSEDQIELKEKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFEEASSKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNLKKKLDQLKSTLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEEPQSPAMESDKSATPEPVTDNRDVEDMELSDVEDDGSKIIVEDRKEKPVEKPAVSTGVPTKSTESVSKASPCAPPSVPTTAAPPLPKPLSTALLSPSPTLVLPNLANVDLAKISSILSSLTSVMKNTGVSSASRPSPGIPTSPSNLSSGLKTPAPATTPSHNPLANILSKVEITPESILSALSKTQTQSAPALQGLSSLLQSVTANPVPASEVTSQSTTASPASTTGSAVKGRNLLSSTQSFIPKSFNYSPSSSTSEVSSTSASKASVGQSPVLPSTTFKLPSSSLGFTGTHNPSPAAPPTEVAVCQSSEVSKPKPESESTSPSLEMKIHNFLKGNPGFSGLNLNIPILSSLGSSAPSEGHASDFQRGPTSTSVDSIDGTPVRDERSGTPTQDEMMDKPTSSSVDTMSLLSKIISPGSSTPSSTRSPPPGRDESYPQELPNSVSTYRPFGLGSDSPYKQPSGGVERPSSLMDSSQEKLFPDTSFQEDEDYRDFEYSGPPPSAMMNLEKKPAKSILKSSKLSDATEYQPILSSYNHRAQEFGVKSAFPPSVRALLDSSENCDRLSSPPGLFGAFNIRGNEPGSERSPSPSKNDAFFTPDSNHSGLSQSTAGHLTLPQTQYPDSPHSVPHRSIFSSQSTLAAPAGHPPTSGVEKVLASTISTTSTIEFKNMLKNASRKPSDDKHFGQTPNKGTSSDGVSLSNLTQPSLPTTDQQQEEHYRIETRVSSSCLDLPDSTEEKGAPIETLGYHNAANRRMSGEPIKTVESIRVPGKGNRGHGREVSRVGWFDLSTPGSSFDNGPSSASELASLGGGGSGGLTGFKTTPYKERAPQFQESVTSFRSNSFNSTFEHHLPPSPLEHGAPFQREPVGPSSAPPAPPKDHGGIFSREAPTHLPSVDLSNPFTKEASLAHAGPPPPPGEHSGVPFPPPPPPPPPGELSSGGTGVPFATPAPPPPPVDHSGVVPFPTPPLPEHGVTGAVSVFPKDHSSLLQGTMAEHFGVLTGPRDLNGPGLNRSRESLSLPSHPLEHLGPALGGGGGGNTSSSGLPLSPAHRDAIGRSGMILRSPRPDFRPREAFLGRDPFHSLKRPRPPFVRGPPFFAPKRPFFPPRY", "sequence_length": 1469, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "944351290fd15154eef58ee3c64bdfe4e06daa49349c622a1ff18bc23d64af8f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NXI6.json", "taxon_id": "10090", "uniprot_accession": "Q6NXI6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7819-pf25127.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25127", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7819-pf25127.yaml" } ], "pfam_ids": [ "PF01585", "PF01805", "PF04818", "PF25127" ], "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEMPMPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEFYSYYKCKLALEQQQLICKQQAPELEPTSAMPPLPQPPLAPTASLTPAQGTPSMDELIQQSQWSLQQQEQHLLALRQEQVTTAVAHAVEQQMQKLLEETQLDMSEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQATLINEYSSVVQPVQLAFQQQIQSLKTQHEEFVSSLAQQQQQQQQQQQQQPQPQPQPQIQLPQMEADVKATPPPPAPPPASAPAPTIPPTTQPDDNKPPIQMPGSSEYDTSAGVQDPAAAGPRGPGPHEQIPPNKPPWFDQPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRGDPGWNGQRDAPWNNQPDPNWNNQFEGPWNNQHEPPPWGGAQREPPFRMQRPPHFRGPFPPHQQHPQFNQPPHPHNFNRFPPRFMQDDFPPRHPFERPPYPHRFDYPQGDFPADMGPPHHHPGHRMPHPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQGPPHINHDDPSLVPNVPYFDLPAGLMAPLVKLEDHEYKPLDPKDIRLPPPMPPSERLLAAVEAFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSSSRSSKSSRSSSRSHSRSRSRSSSRSRSRSRSRSRSSRSRSRSRSRSRSKSYSPGRRRRSRSRSPTPPSAAGLGSNSAPPIPDSRLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRRNKSYSFIARMKARDEFSTFGTRKEEKED", "sequence_length": 936, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3f80e135d141aa4e30a7628149b69ee89c2dbd390c86c15b240350fafbddb30a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CGZ0.json", "taxon_id": "10090", "uniprot_accession": "Q8CGZ0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7819-pf25127.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25127", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7819-pf25127.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8IWX8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01585", "PF01805", "PF04818", "PF25127" ], "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4c1380915f450dc5a04773855bdf7d1c5f58ca6175fe87d3246c98f54f990f4d", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEMPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEFYSYYKCKLALEQQQLICKQQTPELEPAATMPPLPQPPLAPAAPIPPAQGAPSMDELIQQSQWNLQQQEQHLLALRQEQVTAAVAHAVEQQMQKLLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQATLINEYSSVVQPVQLAFQQQIQTLKTQHEEFVTSLAQQQQQQQQQQQQLQMPQMEAEVKATPPPPAPPPAPAPAPAIPPTTQPDDSKPPIQMPGSSEYEAPGGVQDPAAAGPRGPGPHDQIPPNKPPWFDQPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRGDPGWNGQRDAPWNNQPDAAWNSQFEGPWNSQHEQPPWGGGQREPPFRMQRPPHFRGPFPPHQQHPQFNQPPHPHNFNRFPPRFMQDDFPPRHPFERPPYPHRFDYPQGDFPAEMGPPHHHPGHRMPHPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQGPPHINHDDPSLVPNVPYFDLPAGLMAPLVKLEDHEYKPLDPKDIRLPPPMPPSERLLAAVEAFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSRSQSRSRSKSYSPGRRRRSRSRSPTPPSSAGLGSNSAPPIPDSRLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRRNKSYSFIARMKARDECK", "sequence_length": 916, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4c1380915f450dc5a04773855bdf7d1c5f58ca6175fe87d3246c98f54f990f4d", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IWX8.json", "taxon_id": "9606", "uniprot_accession": "Q8IWX8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/cid-ctd-interacting-domain-of-regulation-of-nuclear-pre-mrna-domain-co-cd17011.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd17011", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/cid-ctd-interacting-domain-of-regulation-of-nuclear-pre-mrna-domain-co-cd17011.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rprd1a-b-c-terminal-domain-ipr032337.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032337", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rprd1a-b-c-terminal-domain-ipr032337.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rprd1a-cid-domain-ipr047884.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR047884", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rprd1a-cid-domain-ipr047884.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/crept-pf16566.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16566", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/crept-pf16566.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/6-10-250-2560-6-10-250-2560.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.10.250.2560", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-10-250-2560-6-10-250-2560.yaml" } ], "pfam_ids": [ "PF04818", "PF16566" ], "protein_name": "Regulation of nuclear pre-mRNA domain-containing protein 1A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKHALYGDKKARKRTYEQIKVDENENCSSLGSPSEPPQTLDLVRALQDLENAASGDAAVHQRIASLPVEVQEVSLLEKITDKESGERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLADFLRCQKEALAEKEHKLEEYKRKLARVSLVRKELRARIQSLPDLSRLPNVTGSHMHLPFAGDIYSED", "sequence_length": 312, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e1136a7c238970a076cf87dc21299e10ee9f412dedbd6e664a632eeafcf207c8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VDS4.json", "taxon_id": 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"data/traits/sequence/repeat/pfam/cid-pf04818.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04818", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/cid-pf04818.yaml" } ], "pfam_ids": [ "PF00076", "PF04818" ], "protein_name": "SR-related and CTD-associated factor 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTTAMSNTPGTPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAAAAANTLTPLEQGVSFNKKLMDRFDFGEDSEHSEEPKKEIPASQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSASPSQGSSQQHFLEPEVNLDDSIDIQQQDMDIDEGQDGVEEEVFEQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQETVNTEWETVKSSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPTVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPTIPPVVPTSLVQPSLSMTPETVKDVGFGSLVIPGGSVASNLATSALPAGNVFNAPTKQAEPEEKVPHLIDHQISSGENTRSVIPNDISSNAAILGGQPPNVTSNSGILGVQRPNVSSNSEILGVRPSNVSSSSGIIAAQPPNILNNSGILGIQPPSVSNSSGLLGVLPPNIPNNSGLVGVQPPNVPNTPGLLGTQPPAGPQNLPPLSIPNQRMPTMPMLDIRPGLIPQAPGPRFPLIQPGIPPQRGIPPPSVLDSALHPPPRGPFPPGDIFSQPERPFLAPGRQSVDNVTNPEKRIPLGNDNIQQEGDRDYRFPPIETRESISRPPPVDVRDVVGRPIDPREGPGRPPLDGRDHFGRPPVDIRENLVRPGIDHLGRRDHFGFNPEKPWGHRGDFDEREHRVLPVYGGPKGLHEERGRFRSGNYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREMNGNRLGRDRIQNTWVPPPHARVFDYFEGATSQRKGDNVPQVNGENTERHAQPPPIPVQNDPELYEKLTSSNEINKEKSDTVADIESEPVVESTETEGT", "sequence_length": 1271, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c6cb1a46779aa72421ead8dd2c669f67b86be9934f7e3950a2bdd4eb0c725344", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UPN6.json", "taxon_id": "9606", "uniprot_accession": "Q9UPN6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/anthocyanin-accumulation-in-tissues-in-response-to-uv-light-go0043481.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0043481", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/anthocyanin-accumulation-in-tissues-in-response-to-uv-light-go0043481.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/maintenance-of-floral-organ-identity-go0048497.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0048497", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/maintenance-of-floral-organ-identity-go0048497.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/pwwp-domain-found-in-arabidopsis-thaliana-protein-hua2-like-hulk-famil-cd20147.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/pwwp-domain-found-in-arabidopsis-thaliana-protein-hua2-like-hulk-famil-cd20147.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cid-domain-ipr006569.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006569", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cid-domain-ipr006569.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/cid.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51391", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/cid.yaml" } ], "pfam_ids": [ "PF00855", "PF04818" ], "protein_name": "ENHANCER OF AG-4 protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPGRKRGASKAKAKGQLVLGDLVLAKVKGFPAWPAKISRPEDWDRAPDPKKYFVQFFGTEEIAFVAPPDIQAFTSEAKSKLLARCQGKTVKYFAQAVEQICTAFEGLQNHKSNALGDEDSLDATEPGLTKAEIVDGTDHIVIESERTDNFNFRVDPCFPKLDENNGEERKAEIRKLDSSSFLESKVKTTSPVSESLEHSSFDPKIKKEDFDKGTDGSACNEHFGNGQKKLANGKRIKKEAGGSDRKGEDTVHRDKSNNSHVPGGRTASGNSDSKKSKGLLTEKTSSKVSADKHENSPGIKVGVSGKKRRLESEQGKLAPRVDESSRAAKKPRCESADNKVKCEIDDGSDSTGTVSDIKREIVLGLGARGGNFQYDKEAVAYTKRQRQTMEHATSPSFSGSRDKSGKGHLEQKDRSSPVRNVKAPAAQSLKKRRAVCIYDEDDDEDPKTPLHGKPAIVPQAASVLTDGPKRANVCHSTSTKAKISAGSTESTEVRKFPLRKHCEDASRVLPSNAENSTNSLPVVKPINELPPKDVKQILQSPKMSPQLVLTNKHVAGQHKVVKSSVKVSGVVMAKKPQSDSCKEAVAGSDKISSSQSQPANQRHKSASVGERLTVVSKAASRLNDSGSRDMSEDLSAAMLDLNREKGSATFTSAKTPDSAASMKDLIAAAQAKRKLAHTQNSIFGNLNPSFLSISDTQGRSHSPFMVQNASASAAISMPLVVQGHHQQGSSPSNHGHQSLSRNQIETDDNEERRLSSGHKSVGGSLSCSTEAAISRDAFEGMLETLSRTRESIGRATRLAIDCAKYGLASEVVELLIRKLESESHFHRKVDLFFLVDSITQHSHSQKGIAGASYVPTVQAALPRLLGAAAPPGTGASDNRRKCLKVLKLWLERKVFPESLLRRYIDDIRASGDDATGGFSLRRPSRSERAVDDPIREMEGMLVDEYGSNATFQLPGFFSSHNFEDDEEDDDLPTSQKEKSTSAGERVSALDDLEIHDTSSDKCHRVLEDVDHELEMEDVSGQRKDVAPSSFCENKTKEQSLDVMEPVAEKSTEFNPLPEDSPPLPQESPPPLPPLPPSPPPPSPPLPPSSLPPPPPAALFPPLPPPPSQPPPPPLSPPPSPPPPPPPPSQSLTTQLSIASHHQIPFQPGFPPPTYPLSHQTYPGSMQQDRSSIFTGDQIVQGPGNSSRGGLVEGAGKPEYFVQQSSSFSPAGVCSSREPSSFTSSRQLEFGNSDVLFNPEASSQNHRFQPSTPLSQRPMVRLPSAPSSHFSYPSHIQSQSQHSYTHPYPFPPQRDDARRYRNEEPWRIPSSGHSAENQNGAWIHGRNSHPGLPRVTDSFFRPPPERPPSGTMNYQPSAASNLQAVPAIPGHTAPQMLPSRPDIPTVNCWRPA", "sequence_length": 1392, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "11baf3fc8a6848f1d4911585c5ea302477fc3c7ca4228db994a7b6d43301c339", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9XER9.json", "taxon_id": "3702", "uniprot_accession": "Q9XER9", "uniprot_release": "2026_03" } ], "pfam_id": "PF04818", "short_name": "CID", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf716-pf04819.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf716-pf04819.yaml" } ], "pfam_ids": [ "PF04819" ], "protein_name": "Transmembrane protein 45B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANFKGHALPGSFFLIVGLWWSVKYPLKYFHHKGLKNNRLSRQQERIEIIEGAVKTLFAIIGILAEQFVPDGPHLHLYHENQWVKLMNWQHSTMYLFFGVSGLMDMITYLYFHIVPLGLDRVVLAMAVFIEGFLFYFHVHNRPPLDQHIHSLLLFGLFGAAVSISLEVILRDNIVLELFRTSLLILQGTWFWQIGFVLFPPFGRPEWDQKDMDNIMFITMCFCWHYLVALCIVAINYSLVYCFLTRVKRRAEGEIIGIQKLKSDHTYQSALLSGSDEE", "sequence_length": 278, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "320ddbf0f89e737fdf3eb3a16cd4b03ee26469a5bc5f64c6744607894d24fce0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VCZ2.json", "taxon_id": "10090", "uniprot_accession": "Q8VCZ2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf716-pf04819.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf716-pf04819.yaml" } ], "pfam_ids": [ "PF04819" ], "protein_name": "Transmembrane protein 45B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANFKGHALPGSFFLIIGLCWSVKYPLKYFSHTRKNSPLHYYQRLEIVEAAIRTLFSVTGILAEQFVPDGPHLHLYHENHWIKLMNWQHSTMYLFFAVSGIVDMLTYLVSHVPLGVDRLVMAVAVFMEGFLFYYHVHNRPPLDQHIHSLLLYALFGGCVSISLEVIFRDHIVLELFRTSLIILQGTWFWQIGFVLFPPFGTPEWDQKDDANLMFITMCFCWHYLAALSIVAVNYSLVYCLLTRMKRHGRGEIIGIQKLNSDDTYQTALLSGSDEE", "sequence_length": 275, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e6fb379add666c27641dca561eb7e021567c5bf777818c329e4c9ebe5209b031", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96B21.json", "taxon_id": "9606", "uniprot_accession": "Q96B21", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf716-pf04819.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf716-pf04819.yaml" } ], "pfam_ids": [ "PF04819" ], "protein_name": "Transmembrane protein 45A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGNFRGHALPGTFFFIIGLWWCTKSILKYICKKQKRTCYLGSKTLFYRLEILEGITIVGMALTGMAGEQFIPGGPHLMLYDYKQGHWNQLLGWHHFTMYFFFGLLGVADILCFTISSLPVSLTKLMLSNALFVEAFIFYNHTHGREMLDIFVHQLLVLVVFLTGLVAFLEFLVRNNVLLELLRSSLILLQGSWFFQIGFVLYPPSGGPAWDLMDHENILFLTICFCWHYAVTIVIVGMNYAFITWLVKSRLKRLCSSEVGLLKNAEREQESEEEM", "sequence_length": 275, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fe2af5aa049d4fe1df5ab8fa9f6372eef23351ce51178752707fb2437db71237", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NWC5.json", "taxon_id": "9606", "uniprot_accession": "Q9NWC5", "uniprot_release": "2026_03" } ], "pfam_id": "PF04819", "short_name": "DUF716", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/dbpdz-assoc-pf16610.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16610", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/dbpdz-assoc-pf16610.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/takusan-pf04822.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04822", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/takusan-pf04822.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:E9Q9R9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00595", "PF00625", "PF04822", "PF16610" ], "protein_name": "Disks large homolog 5", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "55d22b42c6d0d5a9acab720c9f085f46c297ec0bdf3b7fc76b11aca274e613d2", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEPQRRELLAQCQQSLAQAMTEVEAVLGLLEAAGALSPGERRQLDEEAGGAKAELLLQLLLAKEQDHFQDLRAALEKTQPHLLPILYLNGVVGPPQSTEGAGSTYSVLSIMPSDSESSSSLSSVGTTGKAPSPPPLLTEQQANDTVENLSIQLRLMTRERNELRKRLAFATHGATFDKRPYHRLNPDYERLKIQCVRAMSDLQSLQNQHTNALKRCEEVAKETDFYHTLHSRLLSDQTQLKDDVDMLRRENGKLRRERNLLQQSWEDMKRLREEDQKEIGDLRAQQQQVLKHNGSSEILNKLYDTAMDKLEVVKKDYDALRKRYSEKVAMHNSDLSRLEQLGEENQRLQKQTEMLTQQRDTAIQLQHQCALSLRRFETIHHELSKATAQNKDLQWEMELLQSELTELRSKQVKTAKESEKYKEERDAVYSEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAASEEMEALRQIKDTVTMDAGRANKEVEILRKQCKALCQELKEALQEADVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKNDVSRELKELKEQMECQLEKEARFRQLMAHSSHDSAIDTDSMEWETEVVEFERETEDIDLKALGFDMAEGVNEPCFPGDCGIFVTKVDKGSIADGRLRVNDWLLRINDVDLINKDKKQAIKALLNGEGAINMVVRRRKSLGGKVVTPLHINLSGQKDSGISLENGVYAAAVVPGSPAAKEGSLAVGDRIVAINGIALDNKSLNECESLLRSCQDSLTLSLLKVFPQSSSWSGQNIFENIKDSDRMLSCRAHGPEVQAHNKRNLLQHNNSTQTDIFYTDRLEDRKELGHSGGSSSFLHKPFSGSSSPVSPQACPSTSERSLNSFRSDTSAERGYGLVDMRSQRPLLSFETEVGPCGAVEVPLDKIDPEGSNSGGTWPKAVLGSTSGPEKLSVYKKPKQRKSIFDPNTFKRPQTPPKIDYLLPGPGLTHSPQPSKRVGSLTPPKPPRRSDSIKFQHRLETSSESEATLVGSSPSTSPPSAPPPSMDPSEPTHASPPRKARVRIASSYHSEGDGDTSYLPAKKPCDEDLTSQKVDELGQKRRRPKSAPSFRPKISPVVIPAQCLEEQECVPAIGELSPEGQEWSPYSPGHASRHGNPLLYPNRPSVGTVPRSMTPGTTVGSILRNPIYTVRSHRVLPCGSPPVPRDAGSQSLSPSVQHQGRLSLDLSHRACSDYSEMRASQGSNSLPSSARLGSSSNLQFKAERIKIPLTPRYPRSVMGSDRGSLSHSECSTPPRSPLNIDTLSSCSQPQTTASTLPRIAVNPSSHGERRKDRPFVEEPRHVKVQKGSEPLGISIVSGEKGGVYVSKVTLGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHIHQLNSHSRSSSHLDPAATPHSTLQGSSAGTPEHPSVIDPLMEQDEGPGTPPAKQSASSTRSVGDTTKKTPDPRIVFIKKSQLDLGVHLCGGNLHGVFVAEVEDDSPAKGPDGLVPGDLILEYGSLDMRSRTVEDVYVEMLKPKDSLRLKVQYRHEEFTRVKGLPGDSFYIRALYDRLAEVEPELSFKKDDILYVDDTLPQGVFGSWMAWQLDENAQKIQRGQIPSKYVMDQEFSRRLSMSEVKDDNTAKTLSAAARRSFFRRKHKHKRSGSKDGKDLLALDTFSNDSIPLFEDSVSLAYQRVQKVDCTSLRPVLLLGPLLDVVKEMLVNEAPGKFCRCPLEVMKASQQAIERGVKDCLFVDYKRRSGHFDVTTVASIKEITEKNRHCLLDIAPHAIERLHHMHIYPIVIFIRYKSAKHIKEQRDPVYLRDKVTQRHSKEQFETAQKIDQEYSRYFTGVVQGGALSSICTQILAMVSQEQSKVLWIPACPP", "sequence_length": 1921, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "55d22b42c6d0d5a9acab720c9f085f46c297ec0bdf3b7fc76b11aca274e613d2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E9Q9R9.json", "taxon_id": "10090", "uniprot_accession": "E9Q9R9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/dbpdz-assoc-pf16610.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16610", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/dbpdz-assoc-pf16610.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/takusan-pf04822.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04822", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/takusan-pf04822.yaml" } ], "pfam_ids": [ "PF00595", "PF00625", "PF04822", "PF16610" ], "protein_name": "Disks large homolog 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPQRRELLAQCQQSLAQAMTEVEAVLGLLEAAGALSPGERRQLDEEAGGAKAELLLKLLLAKERDHFQDLRAALEKTQPHLLPILYLNGVVGPPQPAEGAGSTYSVLSTMPSDSESSSSLSSVGTTGKAPSPPPLLTDQQVNEKVENLSIQLRLMTRERNELRKRLAFATHGTAFDKRPYHRLNPDYERLKIQCVRAMSDLQSLQNQHTNALKRCEEVAKETDFYHTLHSRLLSDQTRLKDDVDMLRRENGQLLRERNLLQQSWEDMKRLHEEDQKEIGDLRAQQQQVLKHNGSSEILNKLYDTAMDKLEVVKKDYDALRKRYSEKVAIHNADLSRLEQLGEENQRLLKQTEMLTQQRDTAIQLQHQCALSLRRFEAIHHELNKATAQNKDLQWEMELLQSELTELRTTQVKTAKESEKYREERDAVYSEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAANEEMEALRQIKDTVTMDAGRANKEVEILRKQCKALCQELKEALQEADVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKNDVSRELKELKEQMESQLEKEARFRQLMAHSSHDSAIDTDSMEWETEVVEFERETEDIDLKALGFDMAEGVNEPCFPGDCGIFVTKVDKGSIADGRLRVNDWLLRINDVDLINKDKKQAIKALLNGEGAINMVVRRRKSLGGKVVTPLHINLSGQKDSGISLENGVYAAAVLPGSPAAKEGSLAVGDRIVAINGIALDNKSLNECESLLRSCQDSLTLSLLKVFPQSSSWSGQNIFENIKDSDKMLSFRAHGPEVQAHNKRNLIQHNNSTQTDIFYTDRLEDRKEPGPPGGSSSFLHKPFPGGPLQVCPQACPSASERSLSSFRSDASGDRGFGLVDVRGRRPLLPFETEVGPCGVGEASLDKADSEGSNSGGTWPKAMLSSTAVPEKLSVYKKPKQRKSIFDPNTFKRPQTPPKIDYLLPGPGPAHSPQPSKRAGPLTPPKPPRRSDSIKFQHRLETSSESEATLVGSSPSTSPPSALPPDVDPGEPMHASPPRKARVRIASSYYPEGDGDSSHLPAKKSCDEDLTSQKVDELGQKRRRPKSAPSFRPKLAPVVIPAQFLEEQKCVPASGELSPELQEWAPYSPGHSSRHSNPPLYPSRPSVGTVPRSLTPSTTVSSILRNPIYTVRSHRVGPCSSPPAARDAGPQGLHPSVQHQGRLSLDLSHRTCSDYSEMRATHGSNSLPSSARLGSSSNLQFKAERIKIPSTPRYPRSVVGSERGSVSHSECSTPPQSPLNIDTLSSCSQSQTSASTLPRIAVNPASLGERRKDRPYVEEPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSSSHLDPAGTHSTLQGSGTTTPEHPSVIDPLMEQDEGPSTPPAKQSSSRIAGDANKKTLEPRVVFIKKSQLELGVHLCGGNLHGVFVAEVEDDSPAKGPDGLVPGDLILEYGSLDVRNKTVEEVYVEMLKPRDGVRLKVQYRPEEFTKAKGLPGDSFYIRALYDRLADVEQELSFKKDDILYVDDTLPQGTFGSWMAWQLDENAQKIQRGQIPSKYVMDQEFSRRLSMSEVKDDNSATKTLSAAARRSFFRRKHKHKRSGSKDGKDLLALDAFSSDSIPLFEDSVSLAYQRVQKVDCTALRPVLILGPLLDVVKEMLVNEAPGKFCRCPLEVMKASQQAIERGVKDCLFVDYKRRSGHFDVTTVASIKEITEKNRHCLLDIAPHAIERLHHMHIYPIVIFIHYKSAKHIKEQRDPIYLRDKVTQRHSKEQFEAAQKLEQEYSRYFTGVIQGGALSSICTQILAMVNQEQNKVLWIPACPL", "sequence_length": 1919, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6a8fbd43fce725e6b430799ab503b953221aaa8c16ac4bcfb6fcf285cb2a1fdf", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TDM6.json", "taxon_id": "9606", "uniprot_accession": "Q8TDM6", "uniprot_release": "2026_03" } ], "pfam_id": "PF04822", "short_name": "Takusan", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 9, "discovery_scanned": true, "example_count": 9, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/g-protein-coupled-receptor-catabolic-process-go1990172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/g-protein-coupled-receptor-catabolic-process-go1990172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-2-pf04826.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04826", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-2-pf04826.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5JY77", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04826" ], "protein_name": "G protein-coupled receptor-associated sorting protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "52667e062c83e750d00f7f38b9335104d0a17529358fd94df93f35c21eaa5cbd", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTGAEIESGAQVKPEKKPGEEVVGGAEIENDVPLVVRPKVRTQAQIMPGARPKNKSKVMPGASTKVETSAVGGARPKSKAKAIPVSRFKEEAQMWAQPRFGAERLSKTERNSQTNIIASPLVSTDSVLVAKTKYLSEDRELVNTDTESFPRRKAHYQAGFQPSFRSKEETNMGSWCCPRPTSKQEASPNSDFKWVDKSVSSLFWSGDEVTAKFHPGNRVKDSNRSMHMANQEANTMSRSQTNQELYIASSSGSEDESVKTPWFWARDKTNTWSGPREDPNSRSRFRSKKEVYVESSSGSEHEDHLESWFGAGKEAKFRSKMRAGKEANNRARHRAKREACIDFMPGSIDVIKKESCFWPEENANTFSRPMIKKEARARAMTKEEAKTKARARAKQEARSEEEALIGTWFWATDESSMADEASIESSLQVEDESIIGSWFWTEEEASMGTGASSKSRPRTDGERIGDSLFGAREKTSMKTGAEATSESILAADDEQVIIGSWFWAGEEVNQEAEEETIFGSWFWVIDAASVESGVGVSCESRTRSEEEEVIGPWFWSGEQVDIEAGIGEEARPGAEEETIFGSWFWAENQTYMDCRAETSCDTMQGAEEEEPIIGSWFWTRVEACVEGDVNSKSSLEDKEEAMIPCFGAKEEVSMKHGTGVRCRFMAGAEETNNKSCFWAEKEPCMYPAGGGSWKSRPEEEEDIVNSWFWSRKYTKPEAIIGSWLWATEESNIDGTGEKAKLLTEEETIINSWFWKEDEAISEATDREESRPEAEEGDIIGSWFWAGEEDRLEPAAETREEDRLAAEKEGIVGSWFGAREETIRREAGSCSKSSPKAEEEEVIIGSWFWEEEASPEAVAGVGFESKPGTEEEEITVGSWFWPEEEASIQAGSQAVEEMESETEEETIFGSWFWDGKEVSEEAGPCCVSKPEDDEEMIVESWFWSRDKAIKETGTVATCESKPENEEGAIVGSWFEAEDEVDNRTDNGSNCGSRTLADEDEAIVGSWFWAGDEAHFESNPSPVFRAICRSTCSVEQEPDPSRRPQSWEEVTVQFKPGPWGRVGFPSISPFRFPKEAASLFCEMFGGKPRNMVLSPEGEDQESLLQPDQPSPEFPFQYDPSYRSVQEIREHLRAKESTEPESSSCNCIQCELKIGSEEFEELLLLMEKIRDPFIHEISKIAMGMRSASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIRMAPPYPNLNIIQTYICKVCEETLAYSVDSPEQLSGIRMIRHLTTTTDYHTLVANYMSGFLSLLATGNAKTRFHVLKMLLNLSENLFMTKELLSAEAVSEFIGLFNREETNDNIQIVLAIFENIGNNIKKETVFSDDDFNIEPLISAFHKVEKFAKELQGKTDNQNDPEGDQEN", "sequence_length": 1395, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "52667e062c83e750d00f7f38b9335104d0a17529358fd94df93f35c21eaa5cbd", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q5JY77.json", "taxon_id": "9606", "uniprot_accession": "Q5JY77", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/armadillo-repeat-containing-domain-ipr006911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/armadillo-repeat-containing-domain-ipr006911.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-2-pf04826.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04826", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-2-pf04826.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5T9G4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04826" ], "protein_name": "Armadillo repeat-containing protein 12", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b5304ccc8e72e7ec7384f8f4cc5d33f5a932fea0bb515f1698207d20b3129465", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGKSIPQYLGQLDIRKSVVSLATGAGAIYLLYKAIKAGIKCKPPLCSNSPICIARLAVERERHGRDSGELRRLLNSLECKQDEYAKSMILHSITRCVYLLEAEASACTTDDIVLLGYMLDDKDNSVKTQALNTLKAFSGIRKFRLKIQEHSIKVLELISTIWDTELHIAGLRLLNNLPLPDYVHPQLRRVMPALMEILQSDYILAQVQAVRLLSYLAQKNDLLYDILNCQVHSNFLNLFQPTQSGSLLYEVLVFAERLSEGRNAPHYHVVKWHYNEQSLHESLFGEESRLADRLLALVIHPEEDVQIQACKVIVSLQYPQDLRARPSSCQPSRSYFKNTE", "sequence_length": 340, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b5304ccc8e72e7ec7384f8f4cc5d33f5a932fea0bb515f1698207d20b3129465", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T9G4.json", "taxon_id": "9606", "uniprot_accession": "Q5T9G4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/g-protein-coupled-receptor-catabolic-process-go1990172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/g-protein-coupled-receptor-catabolic-process-go1990172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/armadillo-repeat-containing-domain-ipr006911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/armadillo-repeat-containing-domain-ipr006911.yaml" } ], "pfam_ids": [ "PF04826" ], "protein_name": "G protein-coupled receptor-associated sorting protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTRAEVEPGAQAKAENKPGDENANAAEVEPEAPLVVRPKVRTQIMTGARPKVKPKGTPGARPKGETSTPGGAYAKCKPKAIPIARSKHDAQVWAPNKFRGESMSKMGKQCQISAADPPLLSNDSGMVAQAKCLPVDRELANMDTESIPKKANSPAGFQPSYGSEEGTNMGSWYRARPVPKGEAYENSDFKWADKPSGSPSFWNRDEASTRFRPRKSMKANNRFRHMAKQEANTMPRHKNKQEFYNISSSDSEDESGKTPWFWPKDKTKVWSKPKEEPNSRSWFRSKKEVRVESTSGSECENPTKSLFWSGEEAKSRSKPRARKGVNMRARQQAKREACSDAMSGAIDTNKKESWFLPEEKANVFSKSKTKKEPRTRAVPKEEVKTKARASTKQEARPEEEVLVGAWFWDTQESTMADRISIKTTFVEEEPIVGDWFWSEEEASVDSETCHTSRPRAKEEQVSSFCLGSGKKSSMESGPKATSKSMPVAKEDEVVIGSWFWADDEEINLQADDESIFGSWFWGTGENSLRSVGVNCEKMPKAGEKEVTDSWFWAGDVNTEAEVEEQARSASTKATIFVPWFWSEKQPNMDLGSEPCSDIMAGAEEEPIIGPWFWAKVDNSVEAEVNSKSSLEDEEEPIRSPWFGAREQTDMKYAAGIRYKPMAEAEDANKKSCVWAKEPCLYPTNRECLKSTLGEKEDTVDPWLWSNNYPRTKTITGSWLWAAEEGNIDDETGEKIKLPTLEDNAFNSWFWKENEESIVEAPKREEFRPEAEEEDIIGSWFWAGDEDRFEPAAKINEENKIASEDEDTVGSWFWGNEEASLEAVRRGTFESAPGIKEEKVTGSWFWTDKAKVGAGSQTVETGSETEEEAIFESLIWAAKKDSIQAGVKRVSKPKDDGNIAVGSWLWSSDKATKEAKTLIVSEASPENGKESVVKFGSRAKDEVINKTGSGDNCKHSTEAETIVGAWFWEGDEASFESNPVPVCKAVCEPESSAEHEPDPSRRPQSWDEVTVQFKAGPWGKAGFPPMNPFRFPKEAASLFAEMFGGKPKLVEVGPEREPEPQFPFQYDPSYRSVREIREHLKARESAQPENWSCNCIQCELRIGSEEFEELLLLMDRNRDPFIHEISKIAMGMRGASQFTRDFIRNSGVVSLIEALLNYPSSRVRTRFLENMVRMAPPYPDLNMIETYVCQICEDTFDYDLDSPDQLSGLTMITHLTATSDYHKVVVNYLAGFFYLLNSGNTKTRFHVLKLLLNLSENLVMTKRLLVTDSVSEFMDLINREESDENIQIVLAIFETISKHIQKEALFSDDDDDDEEEDAVNLEPFISAFREAEKIAKELKRKPGNQKAP", "sequence_length": 1347, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc9d4d58e90c86232bb9b0efc73befbef238b4248ce238c5f70c3229a134d2db", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5U4C1.json", "taxon_id": "10090", "uniprot_accession": "Q5U4C1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/armadillo-repeat-containing-domain-ipr006911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/armadillo-repeat-containing-domain-ipr006911.yaml" } ], "pfam_ids": [ "PF04826" ], "protein_name": "G protein-coupled receptor associated sorting protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGSKNKARAQAKLEKRASAQARAVAEREAANANRGAGKSRDKGKGKAGSKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGTSDFNHRTENKFARSTRKDKPSSDNWFWAGEDSGINSWFWKGEELSNNSVAKCENKPSTSIQARAEEPAPRTSHKSRSGAEEEEEENVIGNWFWEGDDTGFDTDPKPVFKIVKPQPVDEINEKDRPKDWSEVTIWPKAPAVTPAVLGYRSQDSSEARSSSYIVLASNEEETSTACTKNTRSSLQSIPEYPFGSDPCIQTLDEIRQQIKIREENGIKPFACPCKLECYLDSPEFEKLVNILKSTTDPLIHKIAQIAMGIHKVHPFAQEFINEVGVVTLIESLLSFSSPEVSIKKAVITLNSSGDDRYNKVEFHVKHMCKETVSFPLNSPGQQSGLKIIGQLTTESVHHYIVVSYFSELFHLLSQGNRKTRNLVLKVFLNMSENPKAARDMINMKALAALKLIFNQKEAKANLVSAVAIFINIKEHIRKGSIVVVDHLSYNTLTAIFREVKGIIERM", "sequence_length": 539, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "36d960c66d39903f7c9520f5841874c64cc3844c8b1158c5b33fb0212b159931", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PB60.json", "taxon_id": "10090", "uniprot_accession": "Q6PB60", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/armadillo-repeat-containing-domain-ipr006911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/armadillo-repeat-containing-domain-ipr006911.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-2-pf04826.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04826", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-2-pf04826.yaml" } ], "pfam_ids": [ "PF04826" ], "protein_name": "G protein-coupled receptor associated sorting protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKAKAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCKNEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCKPRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVTIWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQPIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKSTTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPPSGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELFHLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVAIFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM", "sequence_length": 547, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5b8c24b558adf6ce0c736dad5841cd2dce5f96fcc4255a112b1fd06ad42353e7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PI77.json", "taxon_id": "9606", "uniprot_accession": "Q6PI77", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/armadillo-repeat-containing-domain-ipr006911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/armadillo-repeat-containing-domain-ipr006911.yaml" } ], "pfam_ids": [ "PF04826" ], "protein_name": "Protein ARMCX6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGRAREVGWMAAGLMIGAGACYCVYKLTIGRDDSEKLEEEGEEEWDDDQELDEEEPDIWFDFETMARPWTEDGDWTEPGAPGGTEDRPSGGGKANRAHPIKQRPFPYEHKNTWSAQNCKNGSCVLDLSKCLFIQGKLLFAEPKDAGFPFSQDINSHLASLSMARNTSPTPDPTVREALCAPDNLNASIESQGQIKMYINEVCRETVSRCCNSFLQQAGLNLLISMTVINNMLAKSASDLKFPLISEGSGCAKVQVLKPLMGLSEKPVLAGELVGAQMLFSFMSLFIRNGNREILLETPAP", "sequence_length": 300, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8566403856ed18b0f1bb2de27e8d2473732f1426f185fee3ed75a25073de394f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7L4S7.json", "taxon_id": "9606", "uniprot_accession": "Q7L4S7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/armadillo-repeat-containing-domain-ipr006911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/armadillo-repeat-containing-domain-ipr006911.yaml" } ], "pfam_ids": [ "PF04826" ], "protein_name": "Protein ARMCX6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGRAREMGWMAAGLMIGAGACYCMYKLTMGRSEGNELEDEEEDEWEDGQDLDEEEADNWFDFTAMARPWSEDGDWDEPGAPGGTEDRRSGGGKANRAHPIKQRPFPYEHKNIWGEQSFKSFTCILDLNKCVSTQRKKRFTKNINAGFSLSPNISKHLASLSVVGNRSPTPHPTVREKALFVPENPNSSLENQGQIKMSIDEVCRETLLCCCKSFLQQAGLSLLISMTVINNMLAKSVSDLKFPLLSKGSGCAEVRGLEELMSLSEKPVLVGEALAAQMLSSFMCLFTRSGSREMLVEAISP", "sequence_length": 301, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a10cbcefeb7977399e6a608d14ce1e8ec3862456cad4cdd1b21164ac3c6605ea", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8K3A6.json", "taxon_id": "10090", "uniprot_accession": "Q8K3A6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/dna-binding-domain-binding-go0050692.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050692", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/dna-binding-domain-binding-go0050692.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/armadillo-repeat-containing-domain-ipr006911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/armadillo-repeat-containing-domain-ipr006911.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8N2F6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04826" ], "protein_name": "Armadillo repeat-containing protein 10", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "edba7eb08cfd068ea23e2d03b6fe0c311e2b6d323980f418298371734bf9ce95", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGGPRGAGWVAAGLLLGAGACYCIYRLTRGRRRGDRELGIRSSKSAGALEEGTSEGQLCGRSARPQTGGTWESQWSKTSQPEDLTDGSYDDVLNAEQLQKLLYLLESTEDPVIIERALITLGNNAAFSVNQAIIRELGGIPIVANKINHSNQSIKEKALNALNNLSVNVENQIKIKIYISQVCEDVFSGPLNSAVQLAGLTLLTNMTVTNDHQHMLHSYITDLFQVLLTGNGNTKVQVLKLLLNLSENPAMTEGLLRAQVDSSFLSLYDSHVAKEILLRVLTLFQNIKNCLKIEGHLAVQPTFTEGSLFFLLHGEECAQKIRALVDHHDAEVKEKVVTIIPKI", "sequence_length": 343, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "edba7eb08cfd068ea23e2d03b6fe0c311e2b6d323980f418298371734bf9ce95", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N2F6.json", "taxon_id": "9606", "uniprot_accession": "Q8N2F6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/armadillo-repeat-containing-domain-ipr006911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/armadillo-repeat-containing-domain-ipr006911.yaml" } ], "pfam_ids": [ "PF04826" ], "protein_name": "Armadillo repeat-containing protein 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGGARDVGWVAAGLVLGAGACYCIYRLTRGPRRGGRRLRPSRSAEDLTDGSYDDILNAEQLKKLLYLLESTDDPVITEKALVTLGNNAAFSTNQAIIRELGGIPIVGNKINSLNQSIKEKALNALNNLSVNVENQTKIKIYVPQVCEDVFADPLNSAVQLAGLRLLTNMTVTNDYQHLLSGSVAGLFHLLLLGNGSTKVQVLKLLLNLSENPAMTEGLLSVQVDSSFLSLYDGQVANEILLRALTLFQNINNCLKVEGRLANQIPFAKGSLFFLLYGEECAQKMRALACHHDVDVKEKALAIKPKF", "sequence_length": 306, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "85af4ae5ba069bed494087c3d4c65841c93621f112aaaa5410038199e9e0125b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D0L7.json", "taxon_id": "10090", "uniprot_accession": "Q9D0L7", "uniprot_release": "2026_03" } ], "pfam_id": "PF04826", "short_name": "Arm_2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04827", "short_name": "Plant_tran", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cenp-v-gfa-domain-ipr006913.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006913", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cenp-v-gfa-domain-ipr006913.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/cenp-v-gfa.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51891", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/cenp-v-gfa.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-170-150-70-2-170-150-70.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.170.150.70", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-170-150-70-2-170-150-70.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGRVRNRATAQRRRRKRPGDPPAACAAIAVTGASRAQCPRVQVGVGSHAAAKRWLGRWRRKRRWRRVRKAGPRDLLPSAPTPDPPGPAPSPKDLDLGAQRERWETFRKLRGLSCEGAAKVLLDTFEYPGLVHHTGGCHCGAVRFAVWAPADLRVVDCSCRLCRKKQHRHFLVPASRFTLLQGAESIVTYRSNTHPALHSFCSRCGVQSFHAAVSDPRVYGVAPHCLDEGTVRSVVIEEVGGGDPGEEAAEEHKAIHKTSSQSAPACPREQEQ", "sequence_length": 272, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8175bd1d540f63013ad79bd34b90d1a31029e13b8f4e968efc982fc5a72e9618", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0U1RR11.json", "taxon_id": "9606", "uniprot_accession": "A0A0U1RR11", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cenp-v-gfa-domain-ipr006913.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006913", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cenp-v-gfa-domain-ipr006913.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/cenp-v-gfa.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51891", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/cenp-v-gfa.yaml" }, { 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"sequence_length": 1077, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0cb37c3b617cd63ab94027456ea5109f285277f054adc51e2286f8984b34300a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0H3B0B8.json", "taxon_id": "502800", "uniprot_accession": "A0A0H3B0B8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain STEC_O31)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf6862-pf21726.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21726", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf6862-pf21726.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/fil-haemagg-2-pf13332.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13332", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/fil-haemagg-2-pf13332.yaml" } ], "pfam_ids": [ "PF04829", "PF05860", "PF13332", "PF21726" ], "protein_name": "tRNA nuclease CdiA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHQPPVRFPYRLLSYLISTIIAGQPLLPAVGAVITPQNGAGMDKAANGVPVVNIATPNGAGISHNRFTDYNVGKEGLILNNATGKLNPTQLGGLIQNNPNLKAGGEAKGIINEVTGGNRSLLQGYTEVAGKAANVMVANPYGITCDGCGFINTPRATLTTGRPVMNADGSLQALEVTEGSITINGAGLDGTRSDAVSIIARATEVNAALHAKDLTVTAGANRVTADGRVSALKGEGDVPKVAVDTGALGGMYARRIHLTSTESGVGVNLGNLYAREGDIILSSSGKLVLKNSLAGGNTTVTGTDVSLSGDNKAGGNLSVTGTTGLTLNQSRLVTDKNLVLSSSGQIVQNGGELTAGQNAMLSAQHLNQTSGAVNAAENVTLTTTGGITLKGRSVAGKTLTVSSGSLNNGGTLGAGRDATVKTGTFSNTGAVQGNGLKVTATDLTSTGSIKSGSTLDISARNATLSGDAGAKDSARVTVSGTLENRGRLVSDDVLTLSATQINNSGTLSGAKELVASADTLTTTEKSVTNSDGNLMLNSASSTLAGETSAGGTVSVKGNSLKTTTTAQTQGNSVSVDVQNAQLDGTQAARDILTLNASEKLTHSGKSSAPSLSLSAPELTSSGVLVASALNTQSQTLTNSGLLQGEASLTVNTQRLDNQQNGTLYSAADLTLDIPDIRNSGLITGDNGLTLNTASLSNPGKITADTLNVRATTLDGDGLLQGAAALALAGDTLSQGSHGRWLTAGDLSLRGKTLNTAGTTQGQNLTVQADRWANSGSVLATGNLTASATGQLTSTGDIMSQGDTTLNAATTDNRGSLLSAGTLSLDGNSLDNSGTVQGNHVTLHHRSTDNSGTVTGLSGLTLHSADGLTNSGALLSQNSLVLSAGDVTNSGRIQGQNITLDASSLTSSGAVQSALDLALTLSGDVIAATGSKITALGDARLTGKVLGNQGLISAKTLEVNGDSLSNSGEISGVNSLNVTLSGNLQQHGKMLTGGALNVNARDISNSGQLQGADNRITASSLANSGRVQGESGLTLTLLNALTNQTSGVLLSQNVSALSAPVLTNDGTIQGNGKTTLSAATQAHNSGKILSGGELTFTTPDYSGSGWLQATDLLLNVAKLAGNGTVMAANQATLTGNSLTNRGLFQAAQLNVNTQTITNSGTLLGNQGLTIKGNNLNNAGGKVFSGGDMLAEMVSLSGAGQLVALGNLTLKLTRGLTAQGVIAANKQLSVSSQGDITNGATLQGNGITLNAAGRLTNNGQLTAGNGTTALSGSGIAMNASGSLQAGGDVSLTSRGDITLDAFTGTTGSLMLTAAGAVINTALLYAGNNLSLFASTIRNHHGDMLAGDSLVMQKDVSGAANAEVINTSGNIETTRGDITIRTGHLLNQREGINETKSYIPVENVAVPDGANSVSVRVGDLGEDGWGYYVKSWSGTAGGGFDAWAVPTEKGATRKFLTGTTRVDVGATGGDARISAGNNLLIDADKLDNTGSHLLASGFVSLSGSQLNNQSFFGYTQDEYNVYRYYGKLAMIPNDGHLQYGDASADDRVTFTLSGAPEYVTRDTGQALRAVIQAGKNVTAVFSSDISNTSTTSNAGRITNTLAAPEINTPAEKNISPRMAQLAPDGTEMLTVTAPDWTDTITRLTIGSGTDLASGIVEGNYPLPSGNNGYFVPSADPDSPYLITVNPKLDGLGKVDSSLFAGLYDLLRMHPGQAPRETDPAYTDEKQFPGSSYFLDRLGLKPEKDYRFLGDAAFDTRYVSNYMLNQIGGRYINGVGSDTDQMRYLMDNAARAQKALGLKFGVALTADQVAALDQSILWYKAVTIKGQTVMVPEVYLSPKDVTLQNGSIISGQNVHLAGGNVTNSGSTLMAQNNLTIDSADSLGNLESGLINAGGALGLKAMGDINNISATITGKTVRLESLAGNVNNLTRYSHWQLDAPEDSLALKHTYTGSIASVSAMDSLDIRADKNISVTGAEISAGDRAALIAGNDLSLNAIDRVSSRRHANSESHQRSAGLTTITAGDSVMLSAGRDVSSQGAGIAAEDNITVRAGRDVNLLAEESVTGSSSYSKKKTVIDETVRQQGAEIASGGDTTITAGRDITAVASSVTATGNISVNAGRDVALTTATESDYHYLETKKKSGGFLSKKTTHTISENSATREAGALLSGNRVTVNAGDNLTVQGSDVVADRDVSLAAGNHVDVLAATSTDTSWRFKETKKSGLMGTGGIGFTIGSSKTTHDRREAGTTQSQSASTIGSTAGNVSITAGKQAHISGSDVIANRDISITGDSVVVDPGHDRRTVDEKFEQKKSGLTVALSGTVGSAINNAVTSAQETKESSDSRLKALQATKTALSGVQAGQAAAMATATGDPNATGVSLSLTTQKSKSQQHSESDTVSGSTLNAGNNLSVVATGKNRGDNRGDIVIAGSQLKAGGNTSLDAANDILLSGAANTQKTTGRNSSSGGGVGVSIGAGKGAGISVFASVNAAKGSEKGNGTEWTETTTDSGKTVTINSGRDTVLNGAQVNGNRIIADVGHDLLISSQQDTSKYDSKQTSVAAGGSFTFGSMTGSGYIAASRDKMKSRFDSVAEQTGMFAGDGGFDITVGRHTQLDGAVIASTATPDKNHLDTGTLGFSDLHNEADYKVSHSGISLSGGGSFGDKFQGNMPGGMISAGGHSGHAEGTTQAAVAEGTITIRDRDNQKQNPADLSRDPAHANDSISPIFDKEKEQRRLQTVGLISDIGSQVADIARTQGELNALKAAKEATGETLPANATEKQRQEYLAKLRDTPEYKKEQEKYGTGSEIQLGIQAATAALQGLAGGNLAGALAGASAPELAHLLKSTEKDPAVNAIAHAILGGAVAAMQGNNVAAGAAGAATGELAARAIAGMLYPGVKQSDLSEEQKQTISTLATVSAGLAGGLTGNSSASAAVGAQSGKNAVDNNYLSVSEKTELEIAKQTLKNSKNPAEREKAQQKYDALLEKDIASDKEVIAACGNGNAGSSACASARLKVIASKEGYEDGPYNSKYSQQYADAYGQIVNLLDITSVDVQNQQQVKDAMVSYFMATLGVDQKTAQGYVETTQGLEIAAASMTPLFGQAVANKITALVDKANKYPSGIGFKINQPEHLAQLDGYSQKKGISGAHNADVFNKAVVDNGVKIISETPTGVRGITQVQYEIPTKDAAGNTTGNYKGNGAKPFEKTIYDPKIFTDEKMLQLGQEAAAIGYSNAIKNGLQAYDAKAGGVTFRVYIDQKTGIVSNFHPK", "sequence_length": 3253, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "578045e7e21d67bea804c9f299f6a32384b882a6abf23fc4b4f5915cb6d53c90", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A0A1S4NYE3.json", "taxon_id": "754081", "uniprot_accession": "A0A1S4NYE3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7 (strain EC869)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cdi-toxin-ec869-like-pf21111.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21111", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cdi-toxin-ec869-like-pf21111.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cdia-helical-pf21483.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21483", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cdia-helical-pf21483.yaml" } ], "pfam_ids": [ "PF04829", "PF21111", "PF21483" ], "protein_name": "Deoxyribonuclease CdiA-o11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVNATLSVVQKNSAFVGSATGELAARAIGMLYPGVKQSDLSEEQKQTISTLATVSAGLAGGLTGSSTASAAVGAQSGKNAVENNYLSTNQSLTFDKELSDCRKSGGNCQDIIDKWEKISDEQSAEIDQKLKDNPLEAQVIDKEVAKGGYDMTQRPGWLGNIGVEVMTSDEAKAYVQKWNGRDLTKIDVNSPEWTKFAVFASDPENQAMLVSGGLLVKDITKAAISFMSRNTATATVNASEVGMQWGQGNMKQGMPWEDYVGKSLPADARLPKNFKIFDYYDGATKTATSVKSIDTQTMAKLANPNQVYSSIKGNIDAAAKFKEYALSGRELTSSMISNREIQLAIPADTTKTQWAEINRAIEYGKSQGVKVTVTQVK", "sequence_length": 377, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "23ceaca0a375ee5883740710589375ecc1ee734352f811911fe1df766f683421", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B3BM80.json", "taxon_id": "478008", "uniprot_accession": "B3BM80", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Yersinia mollaretii (strain ATCC 43969 / DSM 18520 / CIP 103324 / CNY 7263 / WAIP 204)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/endou-bacteria-pf14436.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14436", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/endou-bacteria-pf14436.yaml" } ], "pfam_ids": [ "PF04829", "PF05860", "PF13332", "PF14436" ], "protein_name": "tRNA nuclease CdiA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIPIYLRQKLISYALIYLVAIQPIMPVMAAGIDVAQGSTALDKAGNGVPVVNIAPPNSAGVSHNVYNQFNVGSEGVILNNATDRLTQTQLGGLIQSNANLNGKAAGAIINEVVSANRSQLNGYLEVGGKAAAVMVANPYGITCDGCGFINTPNVTLTTGKPMMDTNGKLQSLDVTQGAISIQGKGLDASQSSALSLISRANEINAQIHAQDLTVIAGSNRVDSAGHVSERQGQGDVPQVSIDTGALGGMYANRIRLVSSEKGVGVNLGNLNARQGDIQLDSKGKLTVNNAVAHGDIIASADQLHLQGHQRAQGNITLNSHGESRLDNATLLAGDTLAVKAGGKITSKESQLNAGVDSAGNIGEKGTVSLQGSELALQQSHVAAAAVSVVSSGDIVQDKESSLTARQLKLSGQHLELAGQLAANNDLSITGQSLRGSKTASVGSQKNITFNLAGDSEWAGQMVAGNDLIFSGQSLTNHGQLLAANQMHFEGLGLDNQGQILAADINIAVHRLNNQGQLQGDKSLLLTADSLVQSTRGTMNSGRALTLRAAEMDISGDLQSQILDVKGDNWHNHGNVVAQEHAQLRLGHTIDNRGVLVSAGDMDLSFNQLSNQGRILGAELALSGKNISNSGQLVGKQQLSLQLDEGYQGTSSGELKSDGLLSVTADEINNQGHWESGSLNTTAQQLTNNGKVLSVGSQNINLSGSLTNQQLGQFLTDGEFIIVAEQVINSGLLQGNQAVTLNGLKQYQGGTGSQLLTKGVGEIHSDSVNNAGLIQAGSLSLTGEVLDNTGTLSGLSTLHIDSHNEIINQARGQLLSDNTIKLDSEQLVNNGLMQGTELVLASQHLTNNGTLLGLTYLELQAVNLTNSSAGKILSGQDLHFTTSHLQQNGQWTALRDLTGEIKGALDFSGAMAAGKQLSLQVDGDFNQRGNLQGNDVSITSRGVITNSGQLAAGSGSLALNGAAINQEQSGSLQSGGQISLTSRGDINNRGFVGAAGDLLLQAIGAVNNTSLLYAGGSMRLLADAIYNVRGDILAGNHLWMQRDNAGNSNREIINSSGNIETQQGDMVLNTASLLNRRDGFSVTEKTGAVNSGGIANVGATNILISSGYFKPGEVTHYSKTVTGGGHHGNVSTVNLLGLVPSARKQKLSTSSSIVTVDSPYDVGRIVAGRDINISANTLVNQASQMSAGRNALLQGQSLNNQSYQSGTLTQYLVYTNTRDTNPEYNLFEFKLSGSPTYEISNDGQLYQGVIQAVGSVSANFTQNLSNTSVKPNIGSIVHQVTQPSLTATTVPSELATKPNSGAAQVAPDSNNGDLVALYNQSGTALTFGLGTDGKPLTRAQLSDYPLPDSNNGLFVVNSEPGSRYLISTNPTLEKLGNVDSTLLSGLQAMLGRQPQTSVAIERNPQWTQQDNFLGSDYLLKKINLDAEHDYRFLGDAAFDTRYINNAVLSQTGQRYLNGVGSDLSQMQYLLDNAAQSQKKLDLKLGVSLTPEQVAQLSHSIVWWENINVNGQTVLAPKLYLAKAEQAHLQGSVISGNKVELNAGSVTNSGVLKGVELLAIASQDTITNEKGGLLTSEGALNLTALNNISNLSSSISGDRVAITSQNGDIINQTQTRQWSADQSRQPGYWSGIKTQSMTQTEVGETAAITAGKALTLAAGNNIAITGAKVTAAGDIGIQAAHDINIIANDLYSAQQQTLGRNRNIELNEQHESQSSHVSAGGTLTAHAGRDITLSASHLGADGNATLQAERDVNLLVQEKSTRNQHIDSEDKTTGYTRSTLSSGGDLTASAGRDINSQAAAVTAENTLALNAGRDINLNAQESRQYNESHGKNYKRVDEAIRQQGTELASGKGTQVHAGQDINLHAASISAKGDLALQAGRDIAVNSATESDYHFFEEKKTKKKLVSKTTIHNVEEDFATTEKSSALVGNNVSLSAGNNLIVKGSSVVGDGTVVLKADNNVDIVAATEQQSSYRLNEKKTSGMFSGGGLGVTLGSKSSRQQINQEGSKQSESASAVGSTAGNVSILAGAQAHISGSDVIAGKDLNVIAGTIKVDPGNDVLKRRQIYEQKQSGLTLSLSSPFTDALLAINSKLKQASDAGSDKLSALYGAQAAREAWVGVDGTMDMMASKPGGPAADPGASIKLQLSVGASHSKSTSELAQNQTRGSSLTAGDNLTMVASGDHEQSGDLSVVGSGVTGNKVTLVAKNDVLLAAASNNSEQTSRDSSSGWNAGVHLSLGKETGIGIAANGFMSKGNSDGKTTDYANARINAKEALAINSGRDTVLSGAQVLGDKITAEIGRDLTISSLQDSDNYNSIQKDASAGFSFTFGPSGGGSASFSLGKTKIESKYASVGDQSGFFAGSKGFDLNVGNHTQLNGGVLASTAGAQDNLLSTGTLGWGDIHNQAEYKATSTRIGYSTDAPMPTLGMANAHGSASGTTRSAVASGEIEIRNQGEQQQDVTTLSRDTDSANGRIDKIFDESKVKDQMAFTQGVTQLATQLVGDVSSWNMKQAERSAAEKLEKDPKYQNATREKRQEMIYASADYKAAQESFGIGSSFWTAGMAVSAALTGLAGNADIGSISSAAVAPYLAGQIKKYTTDKDDKVNKTINILAHAILGGIVAQMQGNSATAGALGGGGGELAARIYMDQVHPGKKVSDLSEADKKIVSAIGTLTAGILGGLSTDSSTGLITGAQAGKNAVEDNNLSFGKGMADIGMSQTSLGVSMLRNGTSPDEVSAALVKNSLGQTPEGQDPIRGLLTAWAEFFGVPVTALIANGPMTVERAAEIVSSGVPTSEAKLIQYTAAKAFLAVAKNLPQGTTLVSTPEGISFRIDQPKHLSSVDGFTQKAGISGGHNADAFYEAAKQYDVKILSETSTGAKGITEVKYQIPTKDRAGNLTGGYKPAVETKTIYDPNVFTDQKILELGQQAAAKGYKDAMASKSGQASATVDGVSFRIYVDKDTGRVRNFHPN", "sequence_length": 2963, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4c4e0c133ec45a797fd273f23ed58dc70a00f5d64d85697beaf363ac54e0d331", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C4SGN7.json", "taxon_id": "349967", "uniprot_accession": "C4SGN7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCTC 10005 / WDCM 00083 / NCDC 279-56)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/fil-haemagg-2-pf13332.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13332", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/fil-haemagg-2-pf13332.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tps-pf05860.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05860", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tps-pf05860.yaml" } ], "pfam_ids": [ "PF04829", "PF05860", "PF13332", "PF15526" ], "protein_name": "16S rRNA endonuclease CdiA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMKQDQVRFSQRALSALLSVLLATQPLLPAVAASITPSGNTQMDKAANGVPVVNIATPNQSGISHNKYNDYNVGKEGLILNNATGQLNQTQLGGLIQNNPNLKAGQEAKGIINEVTGANRSNLQGYTEVAGKAANVIVANPYGITCNGCGFINTPNVTLTTGKPVLDASGKLQSLDVTQGAVTIEGAGLNGSQSDAVSIISRATEINVQLHAKDLRVVAGANRVAADGSVSALKGEGTAPKVAVDTGALGGMYANRIRLVSSETGVGVNLGNLNARQGDIALSSAGKVVLKNTLASGSTTVSAADVTLRGDHKAGGNVTVSGQTALTLDQAHVAADNNLQLTTRGTLTQNGGAFTAANDATLAATTLIQSVDAQASAGRHLAVNAEKNAALNGSVVAGQQLSVKGGELVQQGNLSASEIALNAQTLTQESRSTTNASGNITLTTSGHSQLKGSTTAGQSLAVSAGSLANHGALAAVADTRINTGIFSNTGTVQGNSLTVSGTDITSSGALKSASTLDIRADNATLSGETGAKGKTTVTASGNLNNSGTLISDDTLTLNAAQIVNSGTLSGVRGLTTSGKTFTASATSVTQSDGDVALNNTDTTLAGETSAGGAVTVQGRSLNTTATAQTQGNSVGVAVQNAKLEGTQAAKGNMTLKADSSLNHTGKSSASGLKVETGHLSNSGTLTASALVIDSPEVINGGLIHAGQTLSLVTRLLDNRSSGVLYSPSALSLSLSELNNAGIITSDAALSLSGSNLTNSGELSGTSLAIDYETLKNSAEGMLLAQGANRITAQSVSSAGSMVGNTLTLNADRLESAGLLQGDSALSLTAGILNLLTGSRTLTGGALGLSGTTLTTAGQLQGQDVSIRSHDWTNRGSSLATGSLDVTTAGTLSNTGELMSQGNGTLNAVTTVNSGNMLSAGDLSLNGKTLRNSGTLQGNRVTAHQDTITNSGTLTGIAALMLAARLEMAAPLLTLVNDASGSLLTAGELSVTGGDLRNAGQWQGKRVLIHAQALTNGGAIQAENLLDAQIDSTLTGTAGSKITSNGELALSALTLANSGQWIAKHLTLGASTLNNSGEITGVVALSVALTQLNNQAGGKLLSAGALTLDVENATNAGQIQGKATTVTAGQLINSGRLQGEALTLNASGALNNTASGVLLSENALTVSTATLNNQGTLQGGGESSVKATTRVQNDGKMLSGGKLTLTAPELANSSSGLVQAVRLLLDVVKAVNGGNVLATTRAELRGSSLDNSGTLQGADLQANYQSVTNSGTVLGTTSLTINGDALDNTESGKLYSGDKLLLDVRNYSGRGDVVSLGDTTLKLVNALVNTGTLAASKTLSVSSQNAMTNSGVMQGNAIALSAGGAFTNNGTLTTGNGSSTFNAQSLLLNASGSLQAGGDVQLTSRENITVNGFTGTAGSLTMTAAGTLLNTALIYAGNNISLFAARIHNIYGDILADNSLWMQKNAVGEANAEVVNRSGTIETTRGDITVNTGHLLNEADGLTVSQSEREYPDAIPAADEHYFSYDLNGRRSDFVLLLEDWKNDGSKVVYDWYEQCLGSGANGSGQCRDRVDYRLTGEDIRQFLLSESVVSVSATGSSARIAAGRDITINAGTLDNRASHILAGRNAVLAGGTLNNLSAEGGRRVTYVQAEYRCEWFYRDCSDSKWEPLTQYPDGSWGWFDEDYGWYGWVPYILGERTTEFVADGGVYRSVISAGGNVSANFTSDISNTNVTANSGEFSNTIDAPTLNTLSPEAIGKGLNSESLAQGGSADIRFPEQLGNITDALKDISGGSSLSDQNGSSGNYPLPSGNNGYFVPSTDPDSPYLITVNPKLDELGNMDDSLFNGLYDLLGITPGATPRETNSAYTDRNQFLGSSYFLDRLGLNPDRDYRFLGDAAFDTRYVSNAILNQTGSRYINGIGSDLDQMRYLMDSAAEQQKTLGLKFGVALTAEQVAALDKSMLWWESATINGQTVMIPKVYLSPKDVTVHSGSVISGNNVQLAGGNVINSGSTIAAQNGLSIDSSNSLSNLNAGLLSAGGGLNLSALGDINNIGSTISGKTVGLESVAGSINNITRAQQWNVDAGNVHFSGTDVGKTASITATDGLTMRAGQDINVTGANVSAGGSLGMAAGNDINITANEIVTSEGRAGRNRATTETASVTHQGSTLSAGDDLTLQAGNDVNARAAAIAAEGDVGIQAGRDVDLLAEASMERSSSQAKKKTAIDESVRQQGTEIASGGNTVILAGRDVTAQAADVTAQGDIGVAAGRDVNLTTATESDYRYREQTKTSSGFLSKKTTHTIEEESATREKGSLLSGDNVTVSAGNNLRVLGSAVAGDGDVALSAGNNVDIVAATNTDTAWRFKETKKSGLMGTGGIGFTIGSSKSTHDLREQGTTQSESFSTVGSTGGNVSIAAGKQAHIGGADIIAQKDISLTGDSVVIEPGHDKRTRDEKFEQKSSGLTVALSGAAGSAVNNAVTTAQSAKQSSDSRLAALQGTQAALSGVQAGQAVALDQVKGDSDKRNNNTIGVSASIGSQSSKSSSHMESETTTGSTLSAGNNVTIKATGSDITVAGSQIKAGKDVTLDAARDVNLIASQDTQQTTGKNSSSGGSLGVGVGVGSGGAGISISANANSSKGHEKGNGVWQNETTVDAGNRVTINTGRDATIAGAQVSGETVVADIGRDLTIASTQDSDHYNSKQNSVSGGAGYTFGAGGFSGSINVSRDKMTSDYDSVQEQSGLFAGNGGFDVTVGNHTQLDSGVIASTATADKNRLDTGTLGFSDIHNQADFKTEHQGAGISSGGSIGKQFAGNMANALLAGGGNSGHAEGTTQAAVSEGTLIIRDKENQKQDVADLSRDAEHANGSISPIFDKEKEQQRLQEVQLIGEIGSQVVDIANTQGEINGLNAGRKELADKGITEPGADASDEVKAAYQNALRETDAYKTTTAKYGTGSDLQRGIQAATAALQGLAGSDLTAALAGASAPELAYRIGHGMGIDNNTAAKTIAHAILGGAVAALQGNSAAAGAAGAATGELAAKAIAGMLYPDVKDLSTLSEEQKQTVSALATISAGMAGGLAGDSTGSAVAGGQAGKNAAENNSLALVARGCAVAAPCRTKVAEQLLEIGAKAGIAGLAGAAVKDMADKMTSDELEHLVTLEMMGNDEIIAKYVSLLHDKYAPSHTGGNLLPETLPGHTGNNTGSVDTGPNHTGNTNRQNDSGSNNTGNTEGAPNTGGNTTITPIPNGPSKDDIAYLALKGKEAQEAASNLGFDRRIPPQKAPFNSHGQPVFYDGKNYITPDIDSHNVTNGWKMFNSKGKRIGTYDSGLNRIKD", "sequence_length": 3321, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb3ecdbe006a3f8098ed591be72994711de7213b7db0c33c9c1c4efae508d219", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D5CBA0.json", "taxon_id": "716541", "uniprot_accession": "D5CBA0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dickeya dadantii (strain 3937)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/fil-haemagg-pf05594.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05594", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/fil-haemagg-pf05594.yaml" } ], "pfam_ids": [ "PF04829", "PF05594", "PF13332" ], "protein_name": "Deoxyribonuclease CdiA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAADTLMVTGAWLSNSGTLQGRQSVGLAVGRDFSQTADGVLTSGGTVTVTAGGVATAGALTAQGLALTAGRWRHQGAVTLGGDGRLVLDELDNGGTLRAGGAWDMQAAALSNGGTLQGGRLALTLSGAAVNRGTLAGERVTLTADSLDNGGTLLGMDALTLAIAGTARNQASGQWLSQGESRLTAGTLDNQGQWQGDSLSVTADRIRNAGQLLGLSALTLTADGTLTNTATGTLLTQGAAVLRAATVDNDGEWQAGRLRLTADSLRNGGRIQSDGALDVALSPAGVLTNTGTLAANGDTTLTPGGLDNRGAVSVRGDLTVTGTDLDNAGQLAARGALTLTGSYAGAGSLYSDAALTLRGTTLANDGGRWQGQTVDIGGGPLTNDGNITGLDSLTVTTTGALTNRGRLAGQTLGITADALDNAGTLLGVDALTLAIAGTARNQTSGQWLSNGAGRLTAGTLDNRGQWQGDSLDATADRLDNAGTLLGLSAMTLTVNGALTNTGRLLTQGAAVLSAATADNDGEWQTGSLWLTADSLRNGGQIHSDGEVRITLPTADGDPLRPTLRAARQLAQDVEAIGAGRLSNTGVLTAGGDGRITGRGLDNAGTLAAGGALTLAAGDLTNAGRLESRTLSLTGDSLDNGGTLLAEQGGELTLGGGLHVGADGRLLSNGDWQVQAGTVTSLGQWQGKTLLLSAASLDNGGALLATDAVTLTLTQGYTGGAGSQVLGSGAVTLTADTVTQQGDIGGDRLALTTGTLTNGGRLVGLSQLDVTSRGQLTNRATGSLLGNGTAGVTAATLDNAGSVQADTLTLTADTVTNAGRMQGTSALTLNGVSRYTGTDGSQLLSGGTATLAIDNADNAGLWQAGELRFRGASLTSRGQITGLDSLTVDAASLTSTGQLTTRGLATLRGQRFDNGGTLTALGGFTARFSDSVTNQGGGQLLSGGTGSLTTGTLVNRGRWQSDRLTLTADTLRNPGTLLGLDDGNIQLTGAYVGEAGSQVGGNGALSLSAATIDQAGQWQARDVTLRATRLRNQGSITGSGQLTATLDEQLENLAGATLLGGTVWLGGATVSNGGQIQGRSGLTVQGGTLLDNQGGGQLLSGGQLALGATQLTNAGWVQGQDLTLTTAQLDNSGTLQAQSGLTLHLPQWTNRGTVQAGQLDITTDGALDNRGTLLGLTRLALQAASLNNADGARLYSAGGLQLRTGQLTQDGQLAALGDLRADIGTPFTFTRTLAAGGQLTLAVTGDLVQAGTLQGHGVTVTSTGTLTQQGRIVAGGGNSTLSAAAISQTESGSIQGGGPLSLRATGNIVNRGFVGTAGDLLVQAGGVMENGSLLYGGGNLQLLSAALVNRFGNILAGGSLWIQRDAAGNASDSVLNSSGTIETQRGDITVRTGTLTNQREGLVVTESGSTAADMPDWVGGTTIYIPVERFEVIKDYLVYSFEHTPGAGSDSPTTYNYFYPFPLSHVSKQEFSASSKIVNIESKGGSSLIHSAGDINIFSSVLVNDASIIASEKNILMNGGVLKNSSYQSGVMSESLIYEYERDDKDDFLPYIEWLWEKTKREEGVSDYDYWEYLSGYNIHAYNRNILTNDRFKYVLKDRQIIFTPGQTYAATIQAGGAITANFSQNISNTNLQPGSGGFMPAMATPTLAGVNALGPVGAQADRGLNGGTAGNVSGSTLSGAGNGVALAGQAGRLNAGYSAVTRDNTASSGSALNPVGIPAGPGTAGGAPVAGASLTPVAPGALALSDLQAALAQGLQQLGSPSLTDYPLPTSQSGLFVADTAGDSRYLIRTNPTLSQLGQVDNALFGDLRGLLGQTPGTTAPVERSPTLTDPTQVLGSSYLLGKLNLDAEHDYRFLGDAAFDTRYISNAVLSQTGQRYLNGVGSELAQMQQLMDNAAAEKSRLNLQLGVSLTPEQVAGLSHSLVWWENITVGGQTVLAPKLYLAQADKTNLQGSRIVANSVSLSAGGDIDNRGSTVTAQDALAVASGGNLTNSEGGLLNAGGALNLVALGNLTNSSATIQGNTVTLASVGGDIVNTTTTDQWQTAARDGRGRGSLTRTDIGQAGLISAQGGLTLQAGHDIALNGAQLSAGGPLQLAAGNDIRLTALSTVTDTVRQDGGATTERRGQGLVQSTVASGGDLSLSAGRDLSGTAAQLSAAGTLALSAGRDLSLLSASEEQFSSNAWKRHLDWQQTVTQQGTVLNAGEGLSLRAGQDLTLQGAQAETRGALTAQAGRDLSLLSATESRHDFFEETTVKKGFLSKTTTHTLRETQQTTEKGTLLSAGSVALTAGHDIGVQGSAVAADGEVTLTAGNDITTAASVETYRNYEEQSRKKSGVFSGGGIGFTIGSTSLRQTLESAGTTQSQSVSTLGSTGGSVRLNAGQAVSMAATDVIAARDIQVTGNSVTIDPGYDTRKQSRQMEQKTAGLTVTLSGVVGSALNSAVQTVQAVREQSDSRLQALQGMKAALSGYQAYQGTQIDTNNQGASSFVGISVSLGAQRSSSSQTSEQSQSFASTLNAGHDISVVARQGDITAVGSQLKAANNVELNASRAINLLSARNTESMTGSNSSSGGNIGVSFGLSNSGAGFSVFANVNAAKGRELGNGNSWSETTVDAGQQIALTSGGDTRLTGAQVSGERIVANVGGDLLLKSQQDSNRYDSKQTSVSAGGSFTFGSMTGSGYLSASQDKMHSSFDSVQQQTGLFAGKGGYDISVGNHTQLDGAVIGSTAGADKNRLDTGTLGFSNIDNRAEFSVSHSGIGLSASPSLSMSDMLKSAALTAPSALMSMGRGGNAGSTTYAAVSDGALIIRNQAGQQQDIAGLSREVEHANNALSPIFDKEKEQKRLQTAQMVGELGAQVMDVIRTEGEIRAVRAAEAKGDVKRPPDNASEKDWDKYKKDLTETPAYKAVMQSYGTGSDLQRATQAATAAIQALAGGGNLQQALAGASAPYLAQLVKGVTMPADESKATASDIAANAMGHALMGAVVAQLSGKDAVAGAVGAAGGELTARLLIMKELYSGRDTSDLTEAEKQSVSALASLAAGLASGIASGNTTGAATGAQAGRNAVENNSLGDIAQAQSEGKTLEQNAGEYVEAENERYKKENCAGLSAEACSVKMYEERREELKETLSTGADFVPVIGDIKSFAEAQSALDYLAAAVGLIPGAGDAAGKAIKAAETALKKGELAEASKLINKASDEIQAVKPLDVGSYKELKDRAVVGDGLEHDHIPSFAALRTAKENELGRKLTPAEEKTLYQNATAVEVPKDVHRAGPTYGGKNTAAQVQQDALDLCGAVCRDTDALRTNMIERGYEPALVDDAVKKIIDRNRQIGVIK", "sequence_length": 3326, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1617541ee577bf43afb4dacd053182e8ca81978fce6a325e556bf105dd7d4441", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E0SDG8.json", "taxon_id": "198628", "uniprot_accession": "E0SDG8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain NC101)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf6862-pf21726.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21726", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf6862-pf21726.yaml" } ], "pfam_ids": [ "PF04829", "PF05860", "PF13332", "PF21726" ], "protein_name": "tRNA nuclease CdiA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHQPPVRFTYRLLSYLISTIIAGQPLLPAVGAVITPQNGAGMDKAANGVPVVNIATPDGAGISHNRFTDYNVGKEGLILNNATGKLNPTQLGGLIQNNPNLKAGGEAKGIINEVTGGNRSLLQGYTEVAGKAANVMVANPYGITCDGCGFINTPHATLTTGRPVMNADGSLQALEVTEGSITINGAGLDGTRSDAVSIIARATEVNAALHAKDLTVTAGANRITADGRVSALKGEGDVPKVAVDTGALGGMYARRIHLTSTESGVGVNLGNLYARDGDITLDASGRLTVNNSLATGAVTAKGQGVTLTGDHKAGGNLSVSSRSDIVLSNGTLNSDKDLSLTAGGRITQQNEKLTAGRDVTLAAKNITQDTASQINAARDIVTVSSDTLTTQGQITAGQNLTASATTLTQDGTLLAKGHAGLDAGTLNNSGAVQGASLTLGSTTLSNSGSLLSGGPLTVNTRDFTQSGRTGAKGKVDITASGKLTSTGSLVSDDVLVLKAQDVTQNGVLSGGKGLTVSAQALSSGKKSVTHSDAAMTLNVTTVALDGENSAGDTLRVQADKLSTAAGAQLQSGKNLSINARDARLAGTQAAQQTMAVNASEKLTHSGKSSAPSLSLSAPELTSSGVLVGSALNTQSQTLTNSGLLQGEASLTVNTQRLDNQQNGTLYSAADLTLDIPDIRNSGLITGDNGLTLNTASLSNPGKIIADTLNVRATTLDGDGLLQGAGALALAGDTLSQGRNGRWLTAGDLSLRGKTLHTAGTTQGQNLTVQADNWANSGSVLATGNLTASATGQLTSTGDIMSQGDTTLNAATTDNRGSLLSAGTLSLDGNSLDNRGTVQGNHVTIRQNSVTNSGTLTGIAALTLAARMDMASPQPALMNNGGSLLTSGDLTITAGSITSSGHWQGKQVLITADSLANSGAIQAADSLTARLTGELVSTAGSKVTSNGEMALSALNLSNSGQWIAKNLTLKANSLTSAGDITGVDALTLTVNQTLNNHASGKLLSAGVLTLKADSVKNDGQLQGNATTITAGQLTNGGHLQGETLTLTASGGVNNRSGGVLMSRNALNVSTATLSNQGTIQGGGGVSLNATDRLQNDGKILSGSNLTLTAQVLANTGSGLVQAATLLLDVVNTVNGGRVLATGSADVKGTTLNNTGTLQGADLLVNYHTFSNSGTLLGTSGLGVKGSSLLQNGTGRLYSAGNLLLDAQDFSGQGQVVATGDVTLKLIAALTNHGTLAAGKTLSVTSQNAITNGGVMQGDAMVLGAGEAFTNNGMLTAGKGNSVFSAQRLFLNAPGSLQAGGDVSLNSRSDITISGFTGTAGSLTMNVAGTLLNSALIYAGNNLKLFTDRLHNQHGDILAGNSLWVQKDASGGANTEIINTSGNIETHQGDIVVRTGHLLNQREGFSATTTTRTNPSSIQGMGNALVDIPLSLLPDGSYGYFTREVENQHGTPCNGHGACNITMDTLYYYAPFADSATQRFLSSQNITTVTGADNPAGRIASGRNLSAEAERLENRASFILANGDIALSGRELSNQSWQTGTENEYLVYRYDPKTFYGSYATGSLDKLPLLSPEFENNTIRFSLDGREKDYTPGKTYYSVIQAGGDVKTRFTSSINNGTTTAHAGSVSPVVSAPVLNTLSQQTGGDSLTQTALQQYEPVVVGSPQWHDELAGALKNIAGGSPLTGQTGISDDWPLPSGNNGYLVPSTDPDSPYLITVNPKLDGLGQVDSHLFAGLYELLGAKPGQAPRETAPSYTDEKQFLGSSYFLDRLGLKPEKDYRFLGDAVFDTRYVSNAVLSRTGSRYLNGLGSDTEQMRYLMDNAARQQKGLGLEFGVALTAEQIAQLDGSILWWESATINGQTVMVPKLYLSPEDITLHNGSVISGNNVQLAGGNITNSGGSINAQNGLSLDSTGYIDNLNAGLISAGGSLDLSAIGDISNISSVISGKTVQLESVSGNISNITRRQQWNAGSDSRYGGVHLSGTDTGPVATIKGTDSLSLDAGKNIDITGATVSSGGTLGMSAGNDINIAANLISGSKSQSGFWHTDDNSASSTTSQGSSISAGGNLAMAAGHNLDVTASSVSAGHSALLSAGNDLSLNAVRESKNSRNGRSESHESHAAVSTVTAGDNLLLVAGRDVASQAAGVAAENNVVIRGGRDVNLVAESAGAGDSYTSKKKKEINETVRQQGTEIASGGDTTVNAGRDITAVASSVTATGNISVNAGRDVALTTATESDYHYLETKKKSGGFLSKKTTHTISEDSASREAGSLLSGNRVTVNAGDNLTVEGSDVVADQDVSLAAGNHVDVLAATSTDTSWRFKETKKSGLMGTGGIGFTIGSSKTTHDRREAGTTQSQSASTIGSTAGNVSITAGKQAHISGSDVIANRDISITGDSVVVDPGHDRRTVDEKFEQKKSGLTVALSGTVGSAINNAVTSAQETKESSDSRLKALQATKTALSGVQAGQAAAMATATGDPNATGVSLSLTTQKSKSQQHSESDTVSGSTLNAGNNLSVVATGKNRGDNRGDIVIAGSQLKAGGNTSLDAANDVLLSGAANTQKTTGRNSSSGGGVGVSIGAGGNGAGISVFASVNAAKGSEKGNGTEWTETTIDSGKTVTINSGRDTVLNGAQVNGNRIIADVGHDLLISSQQDTSKYDSKQTSVAAGGSFTFGSMTGSGYIAASRDKMKSRFDSVAEQTGMFSGDGGFDITVGNHTQLDGAVIASTATADKNSLDTGTLGFSDIHNEADYKVSHSGISLSGGGSFGDKFQGNMPGGMISAGGHSGHAEGTTQAAVADGTITIRDRDNQKQNLANLSRDPAHANDSISPIFDKEKEQRRLQTVGLISDIGSQVADIARTQGELNALKAAQDKYGPVPADATEEQRQAYLAKLRDTPEYKKEQEKYGTGSEIQRGIQAATAALQGLAGGNLAGALAGASAPELAHLLKSTEKDPAVNAIAHAILGGTVAAMQGNNVAAGAAGAATGELAARAIAGMLYPGVKQSDLSEEQKQTISTLATVSAGLAGGLTGNSTASAAVGAQSGKNAVENNYLSVSEKTELEIAKQTLKNSKDPAEREKAQQKYDALLEKDIASDKEVIAACSNGNASSSACASARLKVIASKEGYEDGPYNSKYSQQYADAYGQIVNLLDITSVDAQNQQQVKNAMINYFMVTKGVDRQTAESYTETTQGLEIIAASVTPLIGQAASNKLSYLGIGKKISFDGDFYTVDGMKFSKSYYEKLWEQGRPAPFVQAREVLNSNPKIEPDPRGAPGYLRYEGAGLEMIYNPKTGQVGHIQPVKVK", "sequence_length": 3289, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8cd56e2cc36c4e5e8e9ff06c4c32b9eccecef4299648b8a8a50ffe2c192d104a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DSI1.json", "taxon_id": "753642", "uniprot_accession": "P0DSI1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:K15:H31 (strain 536 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tps-pf05860.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05860", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tps-pf05860.yaml" } ], "pfam_ids": [ "PF04829", "PF05860", "PF13332", "PF15605" ], "protein_name": "tRNA nuclease CdiA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHQPPVRFTYRLLSYLISTIIAGQPLLPAVGAVITPQNGAGMDKAANGVPVVNIATPNGAGISHNRFTDYNVGKEGLILNNATGKLNPTQLGGLIQNNPNLKAGGEAKGIINEVTGGNRSLLQGYTEVAGKAANVMVANPYGITCDGCGFINTPHATLTTGRPVMNADGSLQALEVTEGSITINGAGLDGTRSDAVSIIARATEVNAALHAKDLTVTAGANRITADGRVSALKGEGDVPKVAVDTGALGGMYARRIHLTSTESGVGVNLGNLYARDGDIILSSAGKLVLKNSLAGGNTTVTGTDVSLSGDNKAGGNLSVTGTTGLTLNQPRLVTDKNLVLSSSGQIVQNGGELTAGQNAMLSAQHLNQTSGTVNAAENVTLTTTNDTTLKGRSIAGKTLTVSSGSLNNGGTLVAGRDATVKTGTFSNTGTVQGNGLKVTATDLTSTGSIKSGSTLDISARNATLSGDAGAKDSARVTVSGTLENRGRLVSDDVLTLSATQINNSGTLSGAKELVASADTLTTTEKSVTNSDGNLMLDSASSTLAGETSAGGTVSVKGNSLKTTTTAQTQGNSVSVDVQNAQLDGTQAARDILTLNASEKLTHSGKSSAPSLSLSAPELTSSGVLVGSALNTQSQTLTNSGLLQGEASLTVNTQRLDNQQNGTLYSAADLTLDIPDIRNSGLITGDNGLMLNAVSLSNPGKIIADTLSVRATTLDGDGLLQGAGALALAGDTLSQGSHGRWLTADDLSLRGKTLNTAGTTQGQNITVQADRWANSGSVLATGNLTASATGQLTSTGDIMSQGDTTLKAATTDNRGSLLSAGTLSLDGNSLDNSGTVQGDHVTIRQNSVTNSGTLTGIAALTLAARMVSPQPALMNNGGSLLTSGDLTITAGSLVNSGAIQAADSLTARLTGELVSTAGSKVTSNGEMALSALNLSNSGQWIAKNLTLKANSLTSAGDITGVDTLTLTVNQTLNNQANGKLLSAGVLTLKADSVTNDGQLQGNATTITAGQLTNGGHLQGETLTLAASGGVNNRFGGVLMSRNALNVSTATLSNQGTIQGGGGVSLNVTDRLQNDSKILSGSNLTLTAQVLANTGSGLVQAATLLLDVVNTVNGGRVLATGSADVKGTTLNNTGTLQGADLLVNYHTFSNSGTLLGTSGLGVKGSSLLQHGTGRLYSAGNLLLDAQDFSGQGQVVATGDVTLKLIAALTNHGTLAAGKTLSVTSQNAITNGGVMQGDAMVLGAGEAFTNNGMLTAGKGNSVFSAQRLFLNAPGSLQAGGDVSLNSRSDITISGFTGTAGSLTMNVAGTLLNSALIYAGNNLKLFTDRLHNQHGDILAGNSLWVQKDASGGANTEIINTSGNIETHQGDIVVRTGHLLNQREGFSATTTTRTNPSSIQGMGNALVDIPLSLLPDGSYGYFTREVENQHGTPCNGHGACNITMDTLYYYAPFADSATQRFLSSQNITTVTGADNPAGRIASGRNLSAEAERLENRASFILANGDIALSGRELSNQSWQTGTENEYLVYRYDPKTFYGSYATGSLDKLPLLSPEFENNTIRFSLDGREKDYTPGKTYYSVIQAGGDVKTRFTSSINNGTTTAHAGSVSPVVSAPVLNTLSQQTGGDSLTQTALQQYEPVVVGSPQWHDELAGALKNIAGGSPLTGQTGISDDWPLPSGNNGYLVPSTDPDSPYLITVNPKLDGLGQVDSHLFAGLYELLGAKPGQAPRETAPSYTDEKQFLGSSYFLDRLGLKPEKDYRFLGDAVFDTRYVSNAVLSRTGSRYLNGLGSDTEQMRYLMDNAARQQKGLGLEFGVALTAEQIAQLDGSILWWESATINGQTVMVPKLYLSPEDITLHNGSVISGNNVQLAGGNITNSGSSINAQNGLSLDSTGYIDNLNAGLISAGGSLDLSAIGDISNISSVISGKTVQLESVSGNISNITRRQQWNAGSDSRYGGVHLSGTDTGPVATIKGTDSLSLDAGKNIDITGATVSSGGTLGMSAGNDINIAANLISGSKSQSGFWHTDDNSASSTTSQGSSISAGGNLAMAAGHNLDVTASSVSAGHSALLSAGNDLSLNAVRESKNSRNGRSESHESHAAVSTVTAGDNLLLVAGRDVASQAAGVAAENNVVIRGGRDVNLVAESAGAGDSYTSKKKKEINETVRQQGTEIASGGDTTVNAGRDITAVASSVTATGNISVNAGRDVALTTATESDYHYLETKKKSGGFLSKKTTHTISEDSASREAGSLLSGNRVTVNAGDNLTVEGSDVVADQDVSLAAGNHVDVLAATSTDTSWRFKETKKSGLMGTGGIGFTIGSSKTTHDRREAGTTQSQSASTIGSTAGNVSITAGKQAHISGSDVIANRDISITGDSVVVDPGHDRRTVDEKFEQKKSGLTVALSGTVGSAINNAVTSAQETKESSDSRLKALQATKTALSGVQAGQAATMASATGDPNATGVSLSLTTQKSKSQQHSESDTVSGSTLNAGNNLSVVATGKNRGDNRGDIVIAGSQLKVGGNTSLDAANDILLSGAANTQKTTGRNSSSGGGVGVSIGAGGNGAGISVFAGVNAAKGSEKGNGTEWTETTTDSGKTVTINSGRDTVLNGAQVNGNRIIADVGHDLLISSQQDTSKYDSKQTSVAAGGSFTFGSMTGSGYIAASRDKMKSRFDSVAEQTGMFAGDGGFDITVGRHTQLDGAVIASTATPDKNHLDTGTLGFSDLHNEADYKVSHSGISLSGGGSFGDKFQGNMPGGMISAGGHSGHAEGTTQAAVAEGTITIRDRDNQKQNLANLSRDPAHTNDSISPIFDKEKEQRRLQTVGLISDIGSQVADIARTQGELNALKAAQDKYGPVPADATEEQRQAYLAKLRDTPEYKKEQEKYGTGSDMQRGIQAATAALQGLVGGNMAGALAGASAPELANIIGHHAGIDDNTAAKAIAHAILGGVTAALQGNSAAAGAIGAGTGEVIASAIAKSLYPGVDPSKLTEDQKQTVSTLATLSAGMAGGIASGDVAGAAAGAGAGKNVVENNALSLVARGCAVAAPCRTKVAEQLLEIGAKAGMAGLAGAAVKDMADRMTSDELEHLITLQMMGNDEITTKYLSSLHDKYGSGAASNPNIGKDLTDAEKVELGGSGSGTGTPPPSENDPKQQNEKTVDKLNQKQESAIKKIDNTIKNALKDHDIIGTLKDMDGKPVPKENGGYWDHMQEMQNTLRGLRNHADTLKNVNNPEAQAAYGRATDAINKIESALKGYGI", "sequence_length": 3242, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6efab692f9ed930cb97029e12bed8306ae683ceb7948f8fbce2d050d2d9052d0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0T963.json", "taxon_id": "362663", "uniprot_accession": "Q0T963", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Yersinia pestis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/fil-haemagg-pf05594.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05594", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/fil-haemagg-pf05594.yaml" } ], "pfam_ids": [ "PF04829", "PF05594", "PF05860", "PF13018", "PF13332" ], "protein_name": "Toxin CdiA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKNLYRIVFNQARGMLMVVADIAASGRAASSPSSGVGHTQRRRVSALSPLSFRLLIALGCISLSAQAAIVADGSAPGNQQPTIISSANGTPQVNIQTPSSGGVSRNAYRQFDVDNRGVILNNGRGVNQTQIAGLVDGNPWLARGEASVILNEVNSRDPSQLNGYIEVAGRKAQVVIANPAGITCEGCGFINANRATLTTGQAQLNNGQLTGYDVERGEIVIQGKGLDSRGQDHTDLIARSVKVNAGIWANELNITTGRNQVDAAHQNINTNAADGRHRPAVAVDVANLGGMYAGKIRLIGTETGVGVHNAGEIGASAGDIVITADGMLVNRGQISSAQQLAVNTPSGIENSGVLYGKGNTQLTTAGKLSNSGTVAAAGDTLIRAAEVNSSRNSVLGAGIKSDNSAITRGTLDIKARGQLTAQGKNISGTAQTFNANRIDLSGSQTQSGDLTFTTEGGDIDLTGANLFANRRLSVSTPSLLRTDKANLFAEQIALDAQALANVGGVITQTGLTDFNLNLPGDIDNRDGTLLTRGNFLLQAEHLTSNSQSLLGAGIQSDGKLAPRGDLNVTTRHALIAQGKTLTAGTLALSGSRLDLTDSLTQAKYMRLTATEGDIALTGATVMAANTLFADTRQILRSDKAYLTADQINLTAYSLSNVEGRVVQKGSGDFRLDLPGYLDNRGGVLLTKGNLALQAERLTSNSQSLLGAGIQADGSKASKGDLQANTTQALIAQGQNVAAGTMTLSGSRVDLTGSQTHASNITITARDGDVTTREATLITPGTLSMTAVANPEQTLNNRGGKLHADNIQLNLAKLENSNGEIAAATDLWLRLQSDFIHQAGARLTAGRDLLFNSRGALINQYKLEAGRDMQLTALSIRNTSADRNTNADNSSLLAGRGLSLSTDSLFNRGAIYTTGVGQFTVNGNTENIGEIYTEQQLTFTATGNLANRGVMQTRGEMQLSAQGDVNNSGMLYSAGDQMRLSIAGNLTNEGKLHVANGEMRLLTEGNLDNRGSLYGAGNSDITTQGNAVNTGSVYTQGALQWLTKGSVRNSASIAALGDLQLRANDLLSDNQSLMAAGLKADGSRSDSGNLAVSTEQALIAQGQNIAAGSLALAGSQIDLTGSQTQANAISLTAKSGDITLTSAVIKAATQLLVTQLAATRSSFIPPSSIPPSSTQSSSTQASASPSAWLRTDKASLIADQLTFDVQALSNLGGVIAQTGATDFNLNLPGYLDNRGGTILSKGNVAIQAQGLDSDSGSLLGAGVQSDGKLTNAGDLAVTVRQDLIAHGQSLAAGAMTLTGSGVDLTGSQTQARGITITANKGDVSTQRANILSLGSLAINAGANAGQTLNNQGGSLQANNIALNLGQLDNRTGKIAASQDLVLGLQSDFNILADSTLQAGRDFSFTTHGALTNDGQLLAGRKLSTRSNSLLNNGNIRAVQADLRASGALTNRGEILTRGGLSTDANTLFNSGTLIGATATLNARERITNSGPNALIGATDKNGTLALLAPVIENSDTVTRTDTAPTTTLLGMGKVILAGGQDNSGNYSSAAQVLNLSGLIESGNDLLVYAKTLTNRRQILTATTDFIVGDTETGAAYWTAENPDIPGGRYTQPPAGGPMNSDYIGTNYTSTVAYNRIDQISPEAQLLAGGNLTLQVGTLENNWSKVSAQGVIDLTGVTLQQDDWGSQQRLVEQTTSSGEYRYRTYKGKLWGIAWGPEMKLRLNNQYASSITAKTLTGSGTVINNTVINNGAAPGAIVAPRDRDSTGKNIAVEFNGIALTLPRSGLYQLKTDKGDYAPGPEAALSLANISPPSSLDATGPRGVPPPSDDLNRTGLVTPDRAVSGGYLVETHPAFASLNNWKGSDLYLQQLSSDPSVIHKRLGDNAYEQRLLRDQVLALTGRTVASDYRSEQAQFEQLFAAGVQYSKAFNLAPGTRLSAEQMATLTGNIVLMENRDVAGQTVLVPVVYLAGVKPGDLRANGALIAAENISLTEVQGFANAGAISASNNLQISMAKDITLNNRCGLLQAGNHLQLSTLNSDIDLTSARLNATNLQLDSGRDVILRTASDQYSSGNGAVQRTQTILGPLASLNISNNAVITAQRDFIQQGAGINIGKDLQVNTGGDWLLSTVQRSDQISAQYGGGSATSGSLRHLGSEVKVGGALSANVDNLTAVGARVNAGTIDVRAQNITLSAATDSLSVTGGSSSKRHTSSVNLYDETLLGSQLNATGDINLQTVNDITLSASAVQTDGALKLAAGGDVTLTSQTEQHDEQRNHTGTKKGLLSSTTTRSEEGRSQTLAVGSMLSAGSIDVSSQNIAVAGSSVVADKDIRLRAQENLTVSTAQQSESGSQLFEQKKSGLMSTGGIGVFIGTSRQKTTDQTQTVSHVGSTVGSLTGNVRLEAGNQLTLHGSDVVAGKDLALTGADVAISAAENSRSQQYTAESKQRGLTVALSGPVGSAVNTAVTTAKAAREENTGRLAGLQGVKAALSGVQAVQAGQLVQAQGGGITEMVGVSVSLGSQKSSSQQQQEQTQVSGSALTAGNNLSIKASGSDILIAGSQLKAGGDTRLDAARDVQLLGAANRQKTDGSNSSRGGSVGVSVGGSGLSVFANANKGQGNERGDGTFWTETTVDSGGMFSLRSGRDTALTGAQVSAETVKADVGRNLTLQSQQDRDNYDAKQSRASGGISVPVAGGGAAVNLSMSRDRLSSQYDSVQAQTGIFAGSGGVDIRVGEHTQLDGAVIASTAAADKNTLDTGTLGFSDIKNKAVFTVEHQGGSLSTGGPVGSDLLSNLGGMVLAGLGNGGYAEGTTQAAVSEGTITVRDTENQQQNVDDLSRDTGNANGSIGPIFDKEKEQNRLKEVQLIGEIGGQALDIASTQGKIIATHAANDKMKAVKPEDIAAAEKQWEKAHPGKAATAEDINQQIYQTAYNQAFNESGFGTGGPVQRGMQAATAAVQGLAGGNMGAALTGASAPYLAGVIKQSTGDNPAANTMAHAVLGAVTAYASGNNALAGAAGAATAELMAPTIISALGWDKNTLTEGQKQAVSALSTLAAGLAGGLTGDSTADALAGGQAGKNAVENNLLGGNEFTHTQFVQKHGADVLSCADNPSNAACQRGIAENKAYIAALATGSVALLPGSSQAMWALGAGTNAGMQYADNGKINPVNSVAAGWINVITMGQGWKGTIAWNAAGGALINAINGGDPLTGAITNGTGAGFGYGVGNYVVKPAANTLGKWITGGWNPKFDPNLLKYAEVKGQLGISKEMLPSKIPSAVGNAGGSLSSEFGSSLIQQKKDAMEDSK", "sequence_length": 3295, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "13d910b53887cca4c1a4e8d5d4a6ef9697075a1747d96536afef4835ff4d993f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7CGD9.json", "taxon_id": "632", "uniprot_accession": "Q7CGD9", "uniprot_release": "2026_03" } ], "pfam_id": "PF04829", "short_name": "PT-VENN", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04830", "short_name": "DUF637", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04842", "short_name": "DUF639", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 11, "discovery_scanned": true, "example_count": 11, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/dna-binding-domain-ovate-family-like-ipr025830.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025830", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dna-binding-domain-ovate-family-like-ipr025830.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dna-binding-2-pf13724.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13724", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dna-binding-2-pf13724.yaml" } ], "pfam_ids": [ "PF04844", "PF13724" ], "protein_name": "Transcription repressor OFP4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNYKLRLSVMSPSEWFHKLKNMTKPRKKHSLPLYSINTTKKRKPSSESKSLPYSSTSYFFNRSRSRTSFESRILQISPRNSLHNIQSKRKTVYKPSPPSSSIVSAGFNKTFHQSHDSLSASSNLKVISSEDDIIIDMNNRDFKKKTFKEITKFDSTEKACRASNRTKETHIPHHLSVKVSKEKEDEEEDACRTKKKHQKTLVSSGRRSSAKSPRIKLRARSPRIQVSPRRSKSRSQNKQILDSFAVIKSSIDPSKDFRESMVEMIAENNIRTSNDMEDLLVCYLTLNPKEYHDLIIKVFVQVWLEVINSTFASK", "sequence_length": 315, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f03b2032ccf7bfe8d6df8b073d1aba11c9e36f1f52dce45192badec419bb63a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4HNU8.json", "taxon_id": "3702", "uniprot_accession": "F4HNU8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ovate-protein-family-c-terminal-ipr006458.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ovate-protein-family-c-terminal-ipr006458.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/uncharacterized-plant-specific-domain-tigr01568-tigr01568.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01568", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/uncharacterized-plant-specific-domain-tigr01568-tigr01568.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ovate-pf04844.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04844", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ovate-pf04844.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/ovate.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51754", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/ovate.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:F4I8R6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04844" ], "protein_name": "Transcription repressor OFP12", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "26336d860e7dc46fab1f07173e9109666560d03d007a6590467f7ae8f0eaf23f", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPRVMWKNFHLCFPSNLTKPSSSPSGATSDDPNRPSILLINNFNLLYDDSSAAHRRLSKPLIHDVEPSSTFTASTSTAANSSSSSASYDDSDNYGFAPDDDSPPPDLTAVLASRRFFFSSPGCSNSITDSPDLRCRDNYDTATRLLTGGTAVKHYVQSPDPYNDFRRSMQEMIDAVTNAGDLRRYEFLHELLLSYLSLNAADTHKFIIRAFADILVSLLSDGHRIS", "sequence_length": 226, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "26336d860e7dc46fab1f07173e9109666560d03d007a6590467f7ae8f0eaf23f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4I8R6.json", "taxon_id": "3702", "uniprot_accession": "F4I8R6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/dna-binding-domain-ovate-family-like-ipr025830.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025830", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dna-binding-domain-ovate-family-like-ipr025830.yaml" } ], "pfam_ids": [ "PF04844", "PF13724" ], "protein_name": "Transcription repressor OFP2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGNYKFRISEMLPNAWFHKLKDVTKHSKPKNKASSSSSNTCSKKKPSSDSLPQHSYFSNSLVANNPPHHNSPRNSLHTKKMSKRKTLYKPSLKPLTPPPLLVSASFNKSKINDQDSSYSLFPAIETSPESFVYSFYEEDDDDEFVEFSNFKINTKNKAFTKQKVKVIDSVEKACTASKPIKKPQKSHLSVKISRDEDDNEYKAEKKYQRQVSSGRKPSAGINLKRVNSPRIQLSGTRRSTSRRSESKQDVLESFAVMKRSVDPKKDFRESMIEMIEENNIRASKDLEDLLACYLTLNPKEYHDLIIHVFEQIWLQLTKTK", "sequence_length": 320, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a84e5cdb10cec01df7c4a02d4bc54d246a873175db776ed5acb43e995fe603d1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O04351.json", "taxon_id": "3702", "uniprot_accession": "O04351", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"PF04862" ], "protein_name": "Protein BIIDXI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKEMGVIVLLLLHSFFYVAFCFNDGLLPNGDFELGPRHSDMKGTQVINITAIPNWELSGFVEYIPSGHKQGDMILVVPKGAFAVRLGNEASIKQKISVKKGSYYSITFSAARTCAQDERLNVSVAPHHAVMPIQTVYSSSGWDLYSWAFKAQSDYADIVIHNPGVEEDPACGPLIDGVAMRALFPPRPTNKNILKNGGFEEGPWVLPNISSGVLIPPNSIDDHSPLPGWMVESLKAVKYIDSDHFSVPQGRRAVELVAGKESAVAQVVRTIPGKTYVLSFSVGDASNACAGSMIVEAFAGKDTIKVPYESKGKGGFKRSSLRFVAVSSRTRVMFYSTFYAMRNDDFSSLCGPVIDDVKLLSARRP", "sequence_length": 365, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c9c5994b3b0665a157fba73086c3481779cc1b0671039ac924698718d38d203b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LAR0.json", "taxon_id": "3702", "uniprot_accession": "Q8LAR0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-cell-wall-pectin-metabolic-process-go1902066.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1902066", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-cell-wall-pectin-metabolic-process-go1902066.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf642-l-galactono-1-4-lactone-responsive-gene-2-like-domain-ipr006946.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006946", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf642-l-galactono-1-4-lactone-responsive-gene-2-like-domain-ipr006946.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf642-pf04862.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04862", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf642-pf04862.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/galactose-binding-like-domain-superfamily-ipr008979.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/galactose-binding-like-domain-superfamily-ipr008979.yaml" } ], "pfam_ids": [ "PF04862" ], "protein_name": "Protein DUF642 L-GALACTONO-1,4-LACTONE-RESPONSIVE GENE 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGVTVVSFFLLFIATAMAAKSTVSFRDGMLPNGDFELGPKPSDMKGTEILNKLAIPNWEVTGFVEYIKSGHKQGDMLLVVPAGKFAVRLGNEASIKQRLKVVKGMYYSLTFSAARTCAQDERLNISVAPDSGVIPIQTVYSSSGWDLYAWAFQAESDVAEVVIHNPGVEEDPACGPLIDGVAMRSLYPPRPTNKNILKNGGFEEGPLVLPGSTTGVLIPPFIEDDHSPLPGWMVESLKAVKYVDVEHFSVPQGRRAIELVAGKESAIAQVVRTVIGKTYVLSFAVGDANNACKGSMVVEAFAGKDTLKVPYESKGTGGFKRASIRFVAVSTRSRIMFYSTFYAMRSDDFSSLCGPVIDDVKLISVRKP", "sequence_length": 369, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f8386038917d8a40c895210e9074ff3a74667a130f28ae82ae528c30e546cb4f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q94F20.json", "taxon_id": "3702", "uniprot_accession": "Q94F20", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-cell-wall-pectin-metabolic-process-go1902066.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1902066", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-cell-wall-pectin-metabolic-process-go1902066.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf642-l-galactono-1-4-lactone-responsive-gene-2-like-domain-ipr006946.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006946", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf642-l-galactono-1-4-lactone-responsive-gene-2-like-domain-ipr006946.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/galactose-binding-like-domain-superfamily-ipr008979.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/galactose-binding-like-domain-superfamily-ipr008979.yaml" } ], "pfam_ids": [ "PF04862" ], "protein_name": "BIIDXI-like protein At5g11420", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKGGSLSFLFVLLIATITSVICFSDGMLPNGDFELGPKPSDMKGTQVINKKAIPSWELSGFVEYIKSGQKQGDMLLVVPAGKFAIRLGNEASIKQRLNVTKGMYYSLTFSAARTCAQDERLNISVAPDSGVIPIQTVYSSSGWDLYAWAFQAESNVAEIVIHNPGEEEDPACGPLIDGVAIKALYPPRPTNKNILKNGGFEEGPYVLPNATTGVLVPPFIEDDHSPLPAWMVESLKAIKYVDVEHFSVPQGRRAVELVAGKESAIAQVARTVVGKTYVLSFAVGDANNACQGSMVVEAFAGKDTLKVPYESRGKGGFKRASLRFVAVSTRTRVMFYSTFYSMRSDDFSSLCGPVIDDVKLLSARKP", "sequence_length": 366, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "46867d99452b01d530a4b011695caaf735f326503566b765491d8faae77d899f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LYE7.json", "taxon_id": "3702", "uniprot_accession": "Q9LYE7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf642-l-galactono-1-4-lactone-responsive-gene-2-like-domain-ipr006946.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006946", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf642-l-galactono-1-4-lactone-responsive-gene-2-like-domain-ipr006946.yaml" } ], "pfam_ids": [ "PF04862" ], "protein_name": "Protein DUF642 L-GALACTONO-1,4-LACTONE-RESPONSIVE GENE 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMYQEAALLLALLFISSNVVLSAPVRDGLLPNGNFELGPKPSQMKGSVVKERTAVPNWNIIGFVEFIKSGQKQDDMVLVVPQGSSAVRLGNEASISQKISVLPGRLYSITFSAARTCAQDERLNISVTHESGVIPIQTMYGSDGWDSYSWAFKAGGPEIEIRFHNPGVEEHPACGPLIDAVAIKALFPPRFSGYNLIKNGNFEEGPYVFPTAKWGVLIPPFIEDDNSPLPGWMIESLKAVKYVDKAHFAVPEGHRAIELVGGKESAISQIVRTSLNKFYALTFNVGDARDGCEGPMIVEAFAGQGKVMVDYASKGKGGFRRGRLVFKAVSARTRVTFLSTFYHMKSDHSGSLCGPVIDDVRLVAVGKLRG", "sequence_length": 370, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "020810da1e1843662d80a1e20a5cd4af7d5864bdf94dad175b92e5f7eda40d00", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SSB7.json", "taxon_id": "3702", "uniprot_accession": "Q9SSB7", "uniprot_release": "2026_03" } ], "pfam_id": "PF04862", "short_name": "DUF642", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04867", "short_name": "DUF643", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/moulting-cycle-pf04870.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04870", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/moulting-cycle-pf04870.yaml" } ], "pfam_ids": [ "PF04870" ], "protein_name": "Molting protein mlt-10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNLNLILFTALAAVTYANVQPHDISQNGAVKDGNHLRIDLNETSSVELMDKWLSQAFSGLMAAVASKKIAKMPAEHQNIVQQCSKDAKDVREHAKCLVKLLDAEKSGKLGRKQYQKVVKSPETIVLPENPKMLTKKDLEKAENAGAAENNENLEWIGSFGTARAKRSYKVVHRDSYALRSTDDVDGMTKLAKSLTNTVRAMKNKTERAEPWVEAVGRIKKLGEEAKREKKNREVMKKRLKQMIDNTPAEFVDPRKPVALKQAEMEDENNEIAKLMRKKEADEIRVPLKFLRKAVKTALMLGGQNVTDFDQKTLKMVSPRMMSIVPEQEDESLFNLLSPSLFSLHDEGEGIEKLTSLPHLLKKLDNHGQNAWMDFIVEAAGVSDEVTKTEKVFREKKEKELRGTDGVPLYFTKENATKILGNEEKSKIEVFEDLDKSYSEEQKKKLNDDGFAFLTEKQMERLYGKESPYKHTKALKKFKRLRDDPEKYIEKDIRALAEAEKFRVARRADIVSSPFILTPLTFASAPLSNTFIVLSPLVLSPITLSPAVLGPIILSPWVFVPLILSPRVLSPLIVNPLVFSPIILSPLVLHPLILVPGVFNPIILSPLVLSPLILSPQVFTPLILSPFALNPLILTPMVGSPLILSPFVLSPIILSPQALFAVVLSPYALSPLVESKLIAAEVVLSPSWLS", "sequence_length": 690, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70697b508081eb30e9811d97a4a530601436163ecf73c5ad8b5d0ffc4f034920", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O76555.json", "taxon_id": "6239", "uniprot_accession": "O76555", "uniprot_release": "2026_03" } ], "pfam_id": "PF04870", "short_name": "Moulting_cycle", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04875", "short_name": "DUF645", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hk97-gp10-like-pf04883.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hk97-gp10-like-pf04883.yaml" } ], "pfam_ids": [ "PF04883" ], "protein_name": "Uncharacterized protein YqbI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIRGLDQFIQSLDRASRGGLKRKYEQWLESMGFEFLDIIQDEIIRTKTVDTRRLLNSFQKGDQDNIFSMTEGSLKLDVGTNLDYASYVNDGHFTIDPSKNQDRRWVPGRWKGDRFEYDPAEKNSGMLLKFRWVDGSGFWDNAMAIFQLMFERSLERKLQQWIYEEF", "sequence_length": 167, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b2259cd263c4f5404c11e1ccdaf19cc3d12b478c09cb07179b21af846f5037e1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P45925.json", "taxon_id": "224308", "uniprot_accession": "P45925", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hk97-gp10-like-pf04883.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hk97-gp10-like-pf04883.yaml" } ], "pfam_ids": [ "PF04883" ], "protein_name": "Phage-like element PBSX protein XkdI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIAGLKQLNTALKEAASGGFSRQASRWLEECGQDFLEIVQSELISTQTIDTEKLLSSFEKGAEDNLWIVQSGGLSLEVGTQLDYASFLNDGHWTSKQDVRWVPGRFQGSRFIYDPAASTGMALKRKWIPGTGYWDHALLLYEQLFEKSLESKLRQWLKKL", "sequence_length": 161, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e551d04ff186342f42821073986c969d0f9acf7732ee98e4a12b9a0927246791", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54329.json", "taxon_id": "224308", "uniprot_accession": "P54329", "uniprot_release": "2026_03" } ], "pfam_id": "PF04883", "short_name": "HK97-gp10_like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-root-uvb-sensitive-rus-domain-ipr054549.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR054549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-root-uvb-sensitive-rus-domain-ipr054549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/root-uvb-sensitive-protein-c-terminal-ipr055412.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055412", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/root-uvb-sensitive-protein-c-terminal-ipr055412.yaml" }, { 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"uniprot_accession": "Q05468", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-protein-k48-linked-ubiquitination-go0061945.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061945", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-protein-k48-linked-ubiquitination-go0061945.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tcf25-pf04910.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04910", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tcf25-pf04910.yaml" } ], "pfam_ids": [ "PF04910" ], "protein_name": "Ribosome quality control complex subunit TCF25", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRRALRRLRGEQRGQEPLGPDALKFVLLDDDDAEEEGPKPGLGGRRPGGAGKEGVRVNNRFELINTEDLEDDLVVNGERSDCTLPDSVSSGNKGRAKHGNAETKQDGGATKAGSSEQSNASGKLRKKKKKQKNKKSCTGESSENGLEDIDRILERIEDSSGFSHPGPPPLSSRKHVLYVEHRHLNPDTELKRYFGARAVLGEQRPRQRQRVYPKCTWLTTPKSTWPRYSKPGLSMRLLESKKGLSFFAFDHNEEYQQAQHKFLVAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLIERALYSMECAFHPLFSLTSGTCRLDYRRPENRSFYLTLYKQMSFLEKRGCPRTALEYCKLILSLEPDEDPLCMLLLIDHLALRARNYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQTDLPEHELSSARQQASLLIQQALTMFPGVLMPLLEYCSVRPDATVSNHRFFGPDAEISQPPALGQLVSLYLGRSHFLWKEPAIMSWLEENVHEVLQAVDAGDPAVEACENRRKVLYQRAPRNIHRHVILSEIKEAVAALPSDVTTQSVMGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRSLLPNYTTEGERLEEGVAGGPNRNQGLNRLMLAVRDMMANFHFNDLEVPREDNPEGEGDWD", "sequence_length": 676, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "84a82f9e90700e2820b3da118146283a70b77a8a4771ea257829e749c28463b5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R3L2.json", "taxon_id": "10090", "uniprot_accession": "Q8R3L2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-protein-k48-linked-ubiquitination-go0061945.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061945", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-protein-k48-linked-ubiquitination-go0061945.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tcf25-pf04910.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04910", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tcf25-pf04910.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9BQ70", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04910" ], "protein_name": "Ribosome quality control complex subunit TCF25", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f2b6ff56ea0c059e22151ccfbbca36def7d96f42256547369fc2e1e8547c231c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSRRALRRLRGEQRGQEPLGPGALHFDLRDDDDAEEEGPKRELGVRRPGGAGKEGVRVNNRFELINIDDLEDDPVVNGERSGCALTDAVAPGNKGRGQRGNTESKTDGDDTETVPSEQSHASGKLRKKKKKQKNKKSSTGEASENGLEDIDRILERIEDSTGLNRPGPAPLSSRKHVLYVEHRHLNPDTELKRYFGARAILGEQRPRQRQRVYPKCTWLTTPKSTWPRYSKPGLSMRLLESKKGLSFFAFEHSEEYQQAQHKFLVAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLVERALYSMECAFHPLFSLTSGACRLDYRRPENRSFYLALYKQMSFLEKRGCPRTALEYCKLILSLEPDEDPLCMLLLIDHLALRARNYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQTDLPECEQSSARQKASLLIQQALTMFPGVLLPLLESCSVRPDASVSSHRFFGPNAEISQPPALSQLVNLYLGRSHFLWKEPATMSWLEENVHEVLQAVDAGDPAVEACENRRKVLYQRAPRNIHRHVILSEIKEAVAALPPDVTTQSVMGFDPLPPSDTIYSYVRPERLSPISHGNTIALFFRSLLPNYTMEGERPEEGVAGGLNRNQGLNRLMLAVRDMMANFHLNDLEAPHEDDAEGEGEWD", "sequence_length": 676, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f2b6ff56ea0c059e22151ccfbbca36def7d96f42256547369fc2e1e8547c231c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BQ70.json", "taxon_id": "9606", "uniprot_accession": "Q9BQ70", "uniprot_release": "2026_03" } ], "pfam_id": "PF04910", "short_name": "Tcf25", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf655-pf04919.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04919", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf655-pf04919.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/af1531-like-domain-1-10-150-280.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.150.280", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/af1531-like-domain-1-10-150-280.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q60345", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04919" ], "protein_name": "Uncharacterized protein MJ0038", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "aa807ffe1d8d730ce468e1bf9f2a4f238fa06872541cb8c31bcdc68499e595d8", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVRGQYKKGNDERMRFPKKNKPQKFENYAWVLDYLPYGYPDKPDEPIVQGLGEYQFLLMEMIPKPNVDIELGERVYIGKGKRDKIDHVRRMIKYEQLTPTAKSELLYVVMEAVKIQEDRFVRFFNECPPITTRLHTLELLPEIKKKYMWKIIEEREAKKFESFKDFEERIGKNPVRIIAKRIEKELSDDKKDKYYLFVKWKKGIILNEDNMTFYLKE", "sequence_length": 217, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "aa807ffe1d8d730ce468e1bf9f2a4f238fa06872541cb8c31bcdc68499e595d8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q60345.json", "taxon_id": "243232", "uniprot_accession": "Q60345", "uniprot_release": "2026_03" } ], "pfam_id": "PF04919", "short_name": "DUF655", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Beet necrotic yellow vein mosaic virus (isolate Yugoslavia/G1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bnyvv-p31-pf04920.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04920", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bnyvv-p31-pf04920.yaml" } ], "pfam_ids": [ "PF04920" ], "protein_name": "RNA-4 uncharacterized 31.9 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADGEICRCQVTDPPLIRHEDYDCTARMVQKRIEIGPLGVLLNLNMLFHMSRVRHTDVYPCLNNIMSVSVSLDVPVSSGVGVGRARVLIFTTSRERVGIFHGWQVVPGCFLNAPCYSGVDVLSDELCEANIINTSVSSVAMFNRSYKPEDVWILLLTSSTCYGYHDVVVDIEQCTLPSNIDGCVHCSGVCYFNDNHCFCGRRDSNPSNPPCFQFIKDCNELYGTNETKQFICDLVGDANLDSVNTLTKEGWRRFCDVLWNTTYGDVESRTFARFLWFVFYHD", "sequence_length": 282, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f301f7ff6baa104c9e0a0e2d92d21a67c732f82d2d699f60c1c5530676ae5eeb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P19231.json", "taxon_id": "12257", "uniprot_accession": "P19231", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Beet necrotic yellow vein virus (isolate Japan/S)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bnyvv-p31-pf04920.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04920", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bnyvv-p31-pf04920.yaml" } ], "pfam_ids": [ "PF04920" ], "protein_name": "31 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADGEICRCQVTDPPLIRHEDYDCTARMVQKRIEIGPLGVLLNLNMLFHMSRVRHIDVYPYLNNIMSISVSLDVPVSSGVGVGRVRVLIFTTSRERVGIFHGWQVVPGCFLNAPCYSGVDVLSDELCEANITNTSVSSVAMFNGSYRPEDVWILLLTSSTCYGYHDVVVDIEQCTLPSNIDGCVCCSGVCYFNDNHCFCGRRDSNPFNPPCFQFIKDCNELYGTNETKQFICDLVGDDNLDSVNTLTKEGWRRFCDVLWNTTYGDVESRTFARFLWFVFYHD", "sequence_length": 282, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9507df6f859ca77bd93ffb5921df561ac112cbab89cf61fe2446f6844e34e625", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q65670.json", "taxon_id": "652670", "uniprot_accession": "Q65670", "uniprot_release": "2026_03" } ], "pfam_id": "PF04920", "short_name": "BNYVV_p31", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04936", "short_name": "DUF658", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04937", "short_name": "DUF659", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rrs1-pf04939.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rrs1-pf04939.yaml" } ], "pfam_ids": [ "PF04939" ], "protein_name": "Regulator of ribosome biosynthesis", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAEDYKNLPVTVEKPIPVVYDLGNLAAFDSNVLDKNDLDSSNARREEKIKSLTRDNVQLLINQLLSLPMKTTTESVGGTGGQSSVMTLLQLPDPTTDLPREKPLPKAKAMTKWEKFAAKKGIKPKERAGKMIYDEASGEWVPKWGYKGANKKLDDQWLVEVDDKVKGTDNELIDPRTLNRAERKRLVKKNEKQQRRNMKNAL", "sequence_length": 203, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4f84b0e10a5b3c764e93baed539d90856f0578cc8d539e760befd2779bbdbae3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q08746.json", "taxon_id": "559292", "uniprot_accession": "Q08746", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rrs1-pf04939.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rrs1-pf04939.yaml" } ], "pfam_ids": [ "PF04939" ], "protein_name": "Ribosome biogenesis regulatory protein homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGQSVEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALARDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYQRARDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKMQLPSAAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPQLDVTRATNKQMREEDQEEAAKRRKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGGKRRK", "sequence_length": 365, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79e784771dd5b0f50eaac66a4686fd755a4505e2a1e940ab0b53c7519e213272", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q15050.json", "taxon_id": "9606", "uniprot_accession": "Q15050", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rrs1-pf04939.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rrs1-pf04939.yaml" } ], "pfam_ids": [ "PF04939" ], "protein_name": "Ribosome biogenesis regulatory protein homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGQRVEELLAKAEQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTVLRQAGPSPEAELRALARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYKRARDDTKEWLIEVPGSADPMEDQFAKRTQAKKERVAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPRLDVTRATNKQMREEDQEEAAKRRKMSQKGKRKGGRQGPSGKRKGGPPGQGEKRKGGLGSKKHSWPSALAGKKKGVPPQGGKRRK", "sequence_length": 365, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5e5b2806202689a8ce57c4cf106554bf8500364c1d238eed700ab40e835e4146", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CYH6.json", "taxon_id": "10090", "uniprot_accession": "Q9CYH6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rrs1-pf04939.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rrs1-pf04939.yaml" } ], "pfam_ids": [ "PF04939" ], "protein_name": "Ribosome biogenesis regulatory protein homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTEMETEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTETNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRRHGYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPSHVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKHHKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKKSGRSDKLKPKKDITKKPANKAK", "sequence_length": 318, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fc95b1b2719a42a780cad725b8dbf0305d39f524e66e480c3d499460ce118566", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SH88.json", "taxon_id": "3702", "uniprot_accession": "Q9SH88", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rrs1-pf04939.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rrs1-pf04939.yaml" } ], "pfam_ids": [ "PF04939" ], "protein_name": "Ribosome biogenesis regulatory protein homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADKSTEVEKAIDPIIDLGNLLFIDREPIQGDASEGLEERARKNTQLLFNNIWQLEQKRVEEAIIVTLPPATYRLPREKRLPEKKEPTKWEKYAAEKGIEKRKKDKKVFDEATKEWKPTYGYRRGNDDTKDWLIEIPDNAEDPNKDFFAERREKKKERVAKNDMQRMKNLARQMKTTVKSGPSTEKMIGVGVDAKEKSKQQVRFAVDRAKLATASAGKFQEGLKGEKANVKTGKKRKFEANEAPVSGEKERALQILQRMKSKKAKIVEEKAAAVAGPLREKKEKSERKGAKDQTRQKSQIHRQQWFKNKVDGKKKGTGGAGKKGANKAKARKG", "sequence_length": 333, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b69bcccd0a884b2ea4bbd2fe25bfccd0c273b31dba9f58a0b4cce7e1fac5a3a3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9XVT0.json", "taxon_id": "6239", "uniprot_accession": "Q9XVT0", "uniprot_release": "2026_03" } ], "pfam_id": "PF04939", "short_name": "RRS1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/transcrip-act-pf04949.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04949", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/transcrip-act-pf04949.yaml" } ], "pfam_ids": [ "PF04949" ], "protein_name": "RAB6-interacting golgin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQGWAGFSEEELRRLKQTKDPFEPQRRLPAKKSRQQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPVGDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRLMEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYIAAKLDIQRKTEIKEQLTEHLCTIIQQNELRKAKKLEELMQQLDVEADEETLELEVEVERLLHEQEVESRRPVVRLERPFQPAEESVTLEFAKENRKCQEQAVSPKVDDQCGNSSSIPFLSPNCPNQEGNDISAALAT", "sequence_length": 369, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d440000f92ccee82b69ac296f1b7a9696d4b22b87df22c536d873b516329b757", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T7V8.json", "taxon_id": "9606", "uniprot_accession": "Q5T7V8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/transcrip-act-pf04949.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04949", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/transcrip-act-pf04949.yaml" } ], "pfam_ids": [ "PF04949" ], "protein_name": "RAB6-interacting golgin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQDWAGFSEEELRRLKQNKDPFEPQRRIPVKKTRQQLQREKALLEQSQKLGLQDGSASLLPEQLLSAPKQRANSQKPRSPSPVAPSPLTPTSSSGDGKLPGVGSQPQEPGLENSHHGHKSAEVRAPKPDCKVEKKKMELQEKSRWEVLQQEQRLMEEKNKRKKALLAQAIAERSKKTQAETIKLKRIQKELQALDDMVSADIGILRNRIDQASLEYSYARKRFDRAEAEYITAKLDLQRKTETKEQLTEHLCTIIQQNELRKAKKLEELMQQLDVQADEEALQLEVEVEQLLREQEAEAAKQMASVERLCPPDGESVSSELAEENNEPQKQAPSPETDKPGKCCSSSPHRLDCPDPGAKNFSAAVAT", "sequence_length": 368, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7d94c0f5e9301417911b6f1113d01e26812aee5312eb0df44beed16a846136ac", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BRM2.json", "taxon_id": "10090", "uniprot_accession": "Q8BRM2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/transcrip-act-pf04949.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04949", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/transcrip-act-pf04949.yaml" } ], "pfam_ids": [ "PF04949" ], "protein_name": "RAB6-interacting golgin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTEKFNGFSHDEILKITGVKEGGVGKRPASLEAAKPALRIQPGIRRMPDKIFRQADQLRKQQQQQPQQPIQKPDVAKKTKSGTATPTEKPPTPTPAAEDDVANGSLNLDRPLSDSLIEALYHGNATARDKKTPATYADAETTSTDDSSILKISGGDSQTTSSTDDGSILPSTQDTSPRERLNTDSPFKGISLKDFEQHRRMIEEQNKQKKQMLYQAIEQHTQKTAAESRKIEEIRHELSKLESDLAVDVALLRKQIDNACIHFANVEKQYVKIEAQFLRAKIELHNASEKKELLTEHLCTVIAHNEDRKAQKLTELMQKVGLSPTDDCQPIDLTQQSP", "sequence_length": 338, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7983876e1f8e25884ae1ade2c099c2d320251892b55f80ce9a10d87b76d57f0a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IQQ4.json", "taxon_id": "7227", "uniprot_accession": "Q8IQQ4", "uniprot_release": "2026_03" } ], "pfam_id": "PF04949", "short_name": "Transcrip_act", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/endonucleolytic-cleavage-of-tricistronic-rrna-transcript-ssu-rrna-5-8s-rrna-lsu--go0000479.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000479", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/endonucleolytic-cleavage-of-tricistronic-rrna-transcript-ssu-rrna-5-8s-rrna-lsu--go0000479.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/endonucleolytic-cleavage-to-generate-mature-3-end-of-ssu-rrna-from-ssu-rrna-5-8s-go0000461.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000461", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/endonucleolytic-cleavage-to-generate-mature-3-end-of-ssu-rrna-from-ssu-rrna-5-8s-go0000461.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/aarp2cn-ipr012948.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012948", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/aarp2cn-ipr012948.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bms1-tsr1-type-g-domain-ipr030387.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR030387", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bms1-tsr1-type-g-domain-ipr030387.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ribosome-biogenesis-protein-bms1-tsr1-c-terminal-ipr007034.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007034", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ribosome-biogenesis-protein-bms1-tsr1-c-terminal-ipr007034.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aarp2cn-pf08142.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08142", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aarp2cn-pf08142.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tsr1-g-like-pf22298.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22298", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tsr1-g-like-pf22298.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ribiop-c-pf04950.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ribiop-c-pf04950.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/g-bms1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51714", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/g-bms1.yaml" } ], "pfam_ids": [ "PF04950", "PF08142", "PF22298" ], "protein_name": "Ribosome biogenesis protein TSR1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGHSHRSSLKNGHKSYKSKHASKGALKRLYKGKVEKEPVGTGKPDKQVSKLQRKNKAKQLRAQRILDSIENRKLFEGKNGAAKIITIVPLVNDLDPLDILYKLLKCADDEGIMVQEVDSKRIFNVHIKKFKSNLKIIIPDMTNFLNILDCAKVADFVVFGLSGVQEVDEEFGEQIIRALELQGIASYIGVISNLSAVHEKEKFQLDVKQSLESYFKHFFPSEERVYNLEKNSDALNVLRTLCQRLPRSINWRDNRGYVVADFVDFVETSPDSGDLVIEGTVRGIGFNANRLVHIPDFGDFQLNKIEKISESSQKRKIIKEKATDSLSLELDLQTVFESNMNRDTLDEYAPEGTEDWSDYDEDFEYDGLTTARYDDHGFLPGREQTSKKAAVPKGTSDYQAKWYLDDVIDANEEEEAEQTNGKDETMMEIDDEMMVEQDNEEVAGDEEYDIEDNEGFEELSPEEEERQLREFRDMEKEDREFPDEIELEPSESAIERLKRYRGLKNLYNCDWQVDEKDPSSPAEWKRLLRIGNYKNTKNRIIKETKNEAQAIAGDRIRMFIRFPKFLLEKIQDPKQLLFAVYGLLLHEHKNAVVNFSLQRWEQYDKPVPSQEPIVVQYGVRRYTIQPLFSQGSNSPNNVHKYERFLHPDTVSVATCIAPVDFTQSPAIFFKPSPTDAKNIELIGHGTFLNADHSRILAKRAILTGHPFRFHKTVVTVRYMFFRPEDVEWFKSIPLFTKSGRSGFIKESLGTHGYFKATFDGKLSAQDVVAMSLYKRMWPMPSLPWNGM", "sequence_length": 788, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b6d1f09ad6d4e53fefcb5686e389010be7f9153d60e48a315d684f3f09b21fec", "sequence_version": 1, "source_url": 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"MEAKDQKKHRKKNSGPKAAKKKKRLLQDLQLGDEEDARKRNPKAFAVQSAVRMARSFHRTQDLKTKKHHIPVVDRTPLEPPPIVVVVMGPPKVGKSTLIQCLIRNFTRQKLTEIRGPVTIVSGKKRRLTIIECGCDINMMIDLAKVADLVLMLIDASFGFEMETFEFLNICQVHGFPKIMGVLTHLDSFKHNKQLKKTKKRLKHRFWTEVYPGAKLFYLSGMVHGEYQNQEIHNLGRFITVMKFRPLTWQTSHPYILADRMEDLTNPEDIRTNIKCDRKVSLYGYLRGAHLKNKSQIHMPGVGDFAVSDISFLPDPCALPEQQKKRCLNEKEKLVYAPLSGVGGVLYDKDAVYVDLGGSHVFQDEVGPTHELVQSLISTHSTIDAKMASSRVTLFSDSKPLGSEDIDNQGLMMPKEEKQMDLNTGRMRRKAIFGDEDESGDSDDEEDDEMSEDDGLENGSSDEEAEEEENAEMTDQYMAVKGIKRRKLELEEDSEMDLPAFADSDDDLERSSAEEGEAEEADESSEEEDCTAGEKGISGSKAAGEGSKAGLSPANCQSDRVNLEKSLLMKKAALPTFDSGHCTAEEVFASEDESEESSSLSAEEEDSENEEAIRKKLSKPSQVSSGQKLGPQNFIDETSDIENLLKEEEDYKEENNDSKETSGALKWKEDLSRKAAEAFLRQQQAAPNLRKLIYGTVTEDNEEEDDDTLEELGGLFRVNQPDRECKHKADSLDCSRFLVEAPHDWDLEEVMNSIRDCFVTGKWEDDKDAAKVLAEDEELYGDFEDLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDAEYDEGESTYFDDLKGEMQKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGVRLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGKVPKDRRRPAVIREPHERKILALLDALSTVHSQKMKKAKEQRHLHNKEHFRAKQKEEEEKLKRQKDLRKKLFRIQGQKERRNQKSSLKGAEGQLQ", "sequence_length": 1282, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "14924c53dff19ced54eac8b72ace56feef1c519c6eecd16fb17f8f1ecd531d6c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q14692.json", "taxon_id": "9606", "uniprot_accession": "Q14692", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/endonucleolytic-cleavage-of-tricistronic-rrna-transcript-ssu-rrna-5-8s-rrna-lsu--go0000479.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000479", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/endonucleolytic-cleavage-of-tricistronic-rrna-transcript-ssu-rrna-5-8s-rrna-lsu--go0000479.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/aarp2cn-ipr012948.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012948", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/aarp2cn-ipr012948.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bms1-tsr1-type-g-domain-ipr030387.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR030387", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bms1-tsr1-type-g-domain-ipr030387.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ribosome-biogenesis-protein-bms1-tsr1-c-terminal-ipr007034.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007034", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ribosome-biogenesis-protein-bms1-tsr1-c-terminal-ipr007034.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tsr1-g-like-pf22298.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22298", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tsr1-g-like-pf22298.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ribiop-c-pf04950.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ribiop-c-pf04950.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/g-bms1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51714", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/g-bms1.yaml" } ], "pfam_ids": [ "PF04950", "PF08142", "PF22298" ], "protein_name": "Pre-rRNA-processing protein TSR1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTTGHRAGVFKKPSKPHKSWKGKRTKGEITSENRGREGVKQLTRSAHSTHRTISKDARRNQLKMARDQKMADAMERRRTSNAPCLVTVVSLGVGARPTEFIKKLATCDETIIQTTSPSTIDFAIPRFKSRVSFLTPDKDNVDGVLDAIRASDVLCFLWPMSAELSEWDEQLLTIIKANGLPTIVSVVPGLGSIANHKKKEDVRKGIEFIISKWSMSNAGVMPADSVTDNLQLLRILNETKKKPLTLQARHSYMLVENLECSDKTGETCTLVAQGYLRGPEWNANNLVHLPGFGDFQISKIESTVDPHPLKAHNKTPEAQIIAKSDDKRQNTETEITPDSMDGEQTWPTREELEEADKELRRVPKGTSSYQAAWILDDEDDEDEEDSDEDMDDSDNEEVEDDSEEEEPMDDLKSEAGETTASEMMFDDGIDEDINMAEVEKYRKERENAQWPDEVDTPMDMPARIAFQKYRGLKSFRTSTWDPKENLPLDYARIFQFANYRNTKKNVMSKIGGNDVDADSVADKKFNGAFASVFIENVPVAVLEAYKDAKNLVLFQLLPHEHKMSVLNMVLKKHPSCTIPITSDQNQKFIFYVGFRQFEANAVFSSNTPGDKFKLERFMPTEKTFVATVYAPITFNPATVLCFRQDDKGRQELVATGSILDSNPDRIVLKRTVLAGHPYKINRRAVVVRYMFFNREDIEWFKPVELYTPSGRRGHIKEAVGTHGNMKCRFDQQLNAQDSVMLNLYKRVFPVWNYSIFNRSLNPSRFVERSRVESISLVNEDAMEE", "sequence_length": 785, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c26301c7e8c5856423704068d58c70744c0ba6718308e336fced73571a203cff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q19329.json", "taxon_id": "6239", "uniprot_accession": "Q19329", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/aarp2cn-ipr012948.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012948", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/aarp2cn-ipr012948.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bms1-tsr1-type-g-domain-ipr030387.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR030387", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bms1-tsr1-type-g-domain-ipr030387.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ribosome-biogenesis-protein-bms1-tsr1-c-terminal-ipr007034.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007034", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ribosome-biogenesis-protein-bms1-tsr1-c-terminal-ipr007034.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tsr1-g-like-pf22298.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22298", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tsr1-g-like-pf22298.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ribiop-c-pf04950.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ribiop-c-pf04950.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/g-bms1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51714", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/g-bms1.yaml" } ], "pfam_ids": [ "PF04950", "PF08142", "PF22298" ], "protein_name": "Pre-rRNA-processing protein TSR1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAHRPGPLKQQNKAHKGGRHRGRGSAQRDGKGRLALKTLSKKVRKELSRVDQRHRASQLRKQKKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLNELGNTQNFMLLCPRLKHRWFFTSARPGDLHVVLDMAKVADTILFLLDPLEGWDSTGDYCLSCLFAQGLPTYTLAVQGISGLPLKKQIDTRKKLSKAVEKRFPHDKLLLLDTQQEAGMLLRQLANQKQQHLAFRDRRAYLFAHAVDFVPSEENNLVGTLKISGYVRGQTLNVNRLLHIVGYGDFQMKQIDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVIPDPMEGEQTWPTEEELSEAKDFLKESSKVVKKVPKGTSSYQAEWILDGGSQSGGEGDEYEYDDMEHEDFMEEESQDESSEEEEEYETMTIGESVHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEKEVEGAEVGWYVTLHVSEVPVSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMHSLIATGHLMSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGRRGHIKEPLGTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPEPVPWLKSEISSTVPQGGME", "sequence_length": 804, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "da99f61069109e06ddda54674ee937736be9ea7a3c9fca25dba0ee6e05f76d07", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2NL82.json", "taxon_id": "9606", "uniprot_accession": "Q2NL82", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/aarp2cn-ipr012948.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012948", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/aarp2cn-ipr012948.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bms1-tsr1-type-g-domain-ipr030387.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR030387", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bms1-tsr1-type-g-domain-ipr030387.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ribosome-biogenesis-protein-bms1-tsr1-c-terminal-ipr007034.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007034", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ribosome-biogenesis-protein-bms1-tsr1-c-terminal-ipr007034.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tsr1-g-like-pf22298.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22298", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tsr1-g-like-pf22298.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ribiop-c-pf04950.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF04950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ribiop-c-pf04950.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/g-bms1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51714", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/g-bms1.yaml" } ], "pfam_ids": [ "PF04950", "PF08142", "PF22298" ], "protein_name": "Pre-rRNA-processing protein TSR1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAHRSGPLKQQNKAHKGGRHHGGGSAQRDSKGRVGPKILCKKLKRQLSRIDQRHRASQLRKQKRESVLAEKRQLGSKDGPPHQVLVVPLHSRISLPEAFKLLQNEDLGTVYLSERGSTQSFMLLCPSLKHRWFFTYARPGDLHTLLDMAKVADTILFLLDPLEGWDSTGDYCLSCLFAQGLPTYTLAVQGLSGFPPKKQIDARKKLSKMVEKRFPEDKLLLLDTQQESGMLLRQLANQKQRHLAFRDRRAYLFAHVADFVPSEESDLVGTLKISGYVRGRTLNVNSLLHIVGHGDFQMNQIDAPVDPFPLNPRVIKSQKKPNMAMEVCVTDAAPDMEEDLKVLMKADPDHQESLQTEAIPDPMEGEQTWPTEEELDEADDLLKQRSRVVKKVPKGTSSYQAEWILDEGDESDGEGGEYDDIQHEGFMEEESQDGSGEEEEEECETMTLGESVRDDLYDEKVDAEDEERMLEKYKQERLEEMFPDEMDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPRDYARIFQFQNFVNTRKRIFKEIEEKEAEGAEVGWYVTLHVSDVPVSVVEYFRQGAPLIAFSLLPYEQKMSVLNMVVSRNPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTAADKHKFQRFLTADAAFVVTVFAPITFPPASVLLFKQRRNGMHSLIATGHLFSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVMWFKPVELRTKWGRRGHIKEPLGTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPEPVPWVKSDISSTVSEVDME", "sequence_length": 803, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "da8728165c411b110fe6ab9303ca02508ddfd00459d28a496986362ffb0d4859", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5SWD9.json", "taxon_id": "10090", "uniprot_accession": "Q5SWD9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/aarp2cn-ipr012948.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012948", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/aarp2cn-ipr012948.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bms1-tsr1-type-g-domain-ipr030387.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR030387", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bms1-tsr1-type-g-domain-ipr030387.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ribosome-biogenesis-protein-bms1-tsr1-c-terminal-ipr007034.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007034", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ribosome-biogenesis-protein-bms1-tsr1-c-terminal-ipr007034.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ribiop-c-pf04950.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/g-bms1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51714", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/g-bms1.yaml" } ], "pfam_ids": [ "PF04950", "PF08142", "PF22298" ], "protein_name": "Pre-rRNA-processing protein TSR1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADHAFHRPGPLKQANKAHKTGRHRSKGAIDNAQKGKIGLRPISHKHKQQQRKEQRRNQMNQLRKNKREEVLEQKRKLGGQNTAPFLVCLLPMHEQIDPMSALEILKSCDSELVVENSPSGIVYINLPRFKQRFAFVTPPVGRGNELIALDYLKVCDTTLLLTTAAFGDDEIFDRWGQRIFNMMSAQGIPTPVVALMDLESINPKRRPAAKQAAQKVISKLLPEEKIMQLDTASEALNVMRRIGGQKKRILHNVANRPHLFGDVVEFKPGSDPSDDLGTLEVTGFLRGQSLNVNGLVHIPGLGDFQLSQVVAPPDPYKLDKSRDGENSEVRLLDRSDPSKRTSLQSENIPDPMDAEQTWPTEDEIAASQAETKKMKLVKRVPKGYSEYQAAWIPDVEEVEDPDGKDDDDMSEDDDDDKEDDNEDFMSCDNKSFEDEYEKRDSDTEEFQDTVSVASEAAINDEKYDQQMDFQEERETLKKLQQARTDQLWPDEIDTPLDVPARERFQKYRGLESFRTSPWDAKENLPADYARIYQFQNFDRTKRRILNEAKEFEGVLPGLYVTLYVINVPESRWNAFKSAQLMDNIIVYGMLPHEHQMCVMNVVLQRMPDSEVPLKSKEQLIIQCGYRRFVVNPIYSQHTNGDKHKFERYFRPYETVCATFYAPIQFPPAPVLAFKVNPDSTLALVARGRLLSCNPDRIVLKRVVLSGHPMRINRKSASIRYMFFYKEDVEYFKPVKLRTKCGRLGHIKESLGTHGHMKCYFDGQLRSYDTAFMYLYKRVFPKWTYEECLVRTAEHERQHASANRRSSQQVAMEE", "sequence_length": 814, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6c4e4eecd1fcfe01f584ae0a7a5eade727cd0a9340d3771eb40dd9b25710f88e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VP47.json", "taxon_id": "7227", "uniprot_accession": "Q9VP47", "uniprot_release": "2026_03" } ], "pfam_id": "PF04950", "short_name": "RIBIOP_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF04978", "short_name": "MST", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3475-ipr021864.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021864", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3475-ipr021864.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf668-ipr007700.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007700", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf668-ipr007700.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3475-pf11961.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11961", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3475-pf11961.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf668-pf05003.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05003", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf668-pf05003.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0DO24", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05003", "PF11961" ], "protein_name": "Protein PSK SIMULATOR 3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1ea558c171dd663d9ea51fd601f0321c8b0f4e8ef9855085dfd59bf52792ef1f", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGSFCSKSLGINFGSEYSGSSVADDGREPDFGHSQPNGQTSLIVPGMRQLMVKDVKEQNQLKDVFSFREREAEDNFYDGIPTYTMAPSQKIRSAKSTQTAVSKVTEASKLLGKAGLGRAKDVLDTLGSSMTDLSSGGFTSGVATKGNELGILAFEVANTIVKSSNLIESLSKRNIEHLKGTILYSEGVQNLVSNDFDELLRLVAADKRQELQVFSGEVVRFGNRSKDFQWHNLQRYFDRISKELTPQRQLKEDAVLVVDQLMVLVQYTAELYQELQVLYRLEKDYEQKRREEENSANSSKGDGLAILKTELKAQRKVVKSLKKKSLWSRGFEEVMEKLVDIVHFLLLEIHNIFGGADDQPSKKGAAEYDKRLGPAGLALHYANIIVQIDTLVARASSITSNARDSLYQSLPPGIKLALRSKIKSFNVDKELSVTQIKDEMERTLHWLVPVAGNTTKAHHGFGWVGEWANTGTDFTSKPSGGDILRIETLYHASKEKTEIYILGQIIWLQHLVTKAKSDARGGPRLSSIKSPLDTTNQQLISEPLSVPIVTDEEQKMLQEASKRKRTPCVSKSQDFDSEYSRARKCDPLSKSSEYFRGVRRSKSAAVKRYSSGFPLLDFAIDKEKVLDVIDRVDVPRDYKALLKEGSLSF", "sequence_length": 649, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "1ea558c171dd663d9ea51fd601f0321c8b0f4e8ef9855085dfd59bf52792ef1f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DO24.json", "taxon_id": "3702", "uniprot_accession": "P0DO24", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3475-ipr021864.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021864", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3475-ipr021864.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf668-ipr007700.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007700", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf668-ipr007700.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3475-pf11961.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11961", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3475-pf11961.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf668-pf05003.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05003", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf668-pf05003.yaml" } ], "pfam_ids": [ "PF05003", "PF11961" ], "protein_name": "Protein PSK SIMULATOR 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGGVCSCVFKDDDKKKKLRSNDDDKSRGFSGKLKSMRRSKTSDSYYSDNYGGSRRKSSKPDEVVFNFSGELGPMPPLRNDSTKFMQRNSFMGRAGVMGLEKAVEVLDTLGSSMTRMNPSNAYLSGVTSSRGGKVTILAFEVANTIAKGAALLQSLSEENLKFMKKDMLHSEEVKKLVSTDTTELQILAASDKREELDLFSGEVIRFGNMCKDLQWHNLDRYFMKLDTENSQHKLLKDDAEARMQELVTLARITSELYHELQALDRFEQDYRRKLAEVESLNLPRRGEGIVILQNELKQQKKLVKSLQKKSLWSQNLAEIIEKLVDVVSYIRQTIVEVFGNNGLRDNEGEQGRERLGEAGLSLHYANLIQQIDNIASRPSSLPSNVRDTLYNALPATVKTALRPRLQTLDQEEELSVPEIKAEMEKSLQWLVPFAENTTKAHQGFGWVGEWANSRIEFGKGKGKGENNGNPTRLQTLHHADKPIVDSYVLELVVWLHRLMKSSKKRAHGVKLQETNHVSPPNNRTISNTQLSLSPDFTYKNQLSLEDRLLLDRVQSIRFGPNLSKSQELVGLKKNKKGFKIWALSRSTGNSPKVDLSDKNSSSDLDVLDGLDFAFQ", "sequence_length": 615, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c8db0d679b9ccd3a7c93abc0ba0f5692415049f2b7ded743fcaa55c34b63e239", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SA91.json", "taxon_id": "3702", "uniprot_accession": "Q9SA91", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3475-ipr021864.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021864", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3475-ipr021864.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf668-ipr007700.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007700", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf668-ipr007700.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3475-pf11961.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11961", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3475-pf11961.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf668-pf05003.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05003", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf668-pf05003.yaml" } ], "pfam_ids": [ "PF05003", "PF11961" ], "protein_name": "Protein PSK SIMULATOR 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGGLCSRSSSVNNAPGGTFAHVNGHHLNNNASDLNSHSGESGLKDDPSPVTENVDDNKHTSESFSFPIVSSGSHPQNIEDGIPRLSRVLSQKSRSTKSRQAAVAKVSEVSSLLGRAGTMGLGKAVDVLDTLGSSMTNLNLSGGFSSATTVKGNKISILSFEVANTIVKGANLMHSLSKDSITHLKEVVLPSEGVQNLISKDMDELLRIAAADKREELRIFSGEVVRFGNRCKDPQYHNLDRFFDRLGSEFTPQKHLKQEAETIMHQMMSFVHFTADLYHELHALDRFEQDYQRKIQEEENPSTAQRGVGDTLAILRTELKSQKKHVRNLKKKSLWSRILEEVMEKLVDVVHFLHLEIHEAFGGADPDKPANDPPINHKKLGSAGLALHYANIITQIDTLVSRSSTMPASTRDALYQGLPPSIKSALRSRIQSFQVKEELTVPQIKAEMEKTLQWLVPVATNTTKAHHGFGWVGEWASSGSEANQRPAGQTILRIDTLHHADKEKTEAYILDLVVWLHHLVTQVRATTGYGLRSPVKSPIRSPNQKTIQLSSGSHNPSMGLPLLTTEDQEMLRDVSKRRKTPGISKSQEFETVAKARLCKHHRLSKSSSHSPMMGEMMKNKKDTFSTRRPSSVPIIDFDIDRMKALDVIDRVDTIRSL", "sequence_length": 657, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "44ee1cd546a963ba8da48404f3b6782fe70e7dbdb532e72e94c497de751bf9d4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9XID5.json", "taxon_id": "3702", "uniprot_accession": "Q9XID5", "uniprot_release": "2026_03" } ], "pfam_id": "PF05003", "short_name": "DUF668", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05006", "short_name": "PIF3", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 11, "discovery_scanned": true, "example_count": 11, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Xenopus tropicalis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/wdr90-beta-prop-4th-pf23342.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23342", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/wdr90-beta-prop-4th-pf23342.yaml" } ], "pfam_ids": [ "PF00400", "PF05018", "PF23342", "PF23393", "PF23409" ], "protein_name": "WD repeat-containing protein 90", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGVWQHPFVNVFKHLRLEEWKKSSKEGDVTSVMDKTLKCTVYRIRGSIPAGNYIQLPKTSSQSLGLTGRYLYILFKPLPGKHFVVHIDVSAEDGQTVRISFSNLFKEFKSTATWLQFPFVCGAIKGSVYDSTAQGARQGMVGPAPSGSRWTCLLLDVQYILSLYLSRRYSHLRSAKLCSNLLVRNLMTSDLLFNPEVNFMEARHAKTLPDGISPMPREMSFPVPKGEKWHDLYDFIMFPSDSSKLPYDSIQKGQSMVTAPGAPMSRSPARERPRSVTISKPVQDRVSLIQQITTPRPMPHRSLLRVESVPERPVSVSARAEEARDLEDRSRGVEQDGGVHVYAHKTNKLSIHRHKSDSEQVICTKVDRPETLSVPPECKKLLPDPIFNLRRIIGFGGCTECFALWTHTGCSVVYPCHAIIVVLEVKTGEQRFLLGHTDKVSALAFNGSCTLLASAQTGSLSMVRLWHFQKGSCLAMFKTHVHSVSYLSFSHSGTVLCGVGKDGHGKTMVVVWNTSQASRSGEVAVLAKAHTDIDIQTMKIAFFDDTRMVSCGKDNVRLWRVRGGTLRSCPVNLGEYHMLEFSDLAFEAGHRPEKEAEDRTLYVSSRSGHILEIDYKNVVLRNVRRVQPGQQQHSERRDKQTFSSGPGIAINSLSVSATFCATGTEDGYLRLWPLDFSGVFLEAEHEGPVSCVAISPEGLRVLSCTSSGELGVLDVPSRGYNTLMRSHTDTLLSFSCHPTHPQLVTVSSDNTIRIWDTGTLQQLYDFTAEEETPCAVTFHPVRQAFACGFSSGTIRFFDITATALQAEHKQHRGAITGLLFSPDGSLMYSCCSLGSVALYSIGHKEQHVLRVLGNVVCKDSERGPMALSLSSDGRLLAFVGPTEYTVTVMDARSLDELLRVDVSILDLDSTTLDCALGLAFSPLKPHHLLVSTSGNKILWLDPKTGRLTREVTQVHKQCCSSLAVSMDTRYMLTAGDRLLKVWDQRQPGTVRPQVFIGHSEAVQQVDFSPDQQSVISAGDAVFIWDFLAAPDPEFTKTDCVPALPFALHSSAALDPSSEHRRDSTFISSGMPRGTAPRPCISSPPRLDISPVQGMDHPDLFSESDDGQEEEGNRDEQERTLVPDTRDNLVESDEQSSVVIIECQPNRAKLLTGSKSNSSSLREGMVKSTHEPPRPDSYTHFHTRFKASCLAKGMCHPPEGQEMLTLRALIGYNGNGRANMAWNPDTGFFSYTCGCVIVVEDLHSGSQRHWLGHPEEISTLALTNDALVLASASGSGDGSSLCQIRIWDTQDGSCMKILTHHRTEVQAMSYSRDDRLFVSIGDYRDGNLALWSTKGYELLATSRLFQPVHAVTFNPAHFDDFASAGPGAVSFWRIETQGTDTQIKVYRVAVPEEVGTAAELTSITYNSTSLLYSGCSTGQVCVWDCQTHRCFLTWEADQGEIGILLCRGNRLLTGSNTRRIRLWCVAAVQELREKGSGASSTSVLMEHEMTLDGAIVSATFDDALEMGIVGTTAGTLWYINWVENTSIRLISGHRNKVMDLAVAHGESHCATCGEDGSLRIWSLQSCELLLQFQVLNQSCLCLAWSPQPKSGPSTEDQRIAAGYSDGTIRIFSVSKTEMEMKIHPHPCAVTSIAYSTSGDVLLTGGKDGQMAITSPRTGMTIRVLSDHKGSPITTIECTGRKLTGLPTDGELWLAASTDRRVSIWASDWSKDKCELLDWLSFPAPTSQKDLDVSVPTLAAFCPWQPGTVVYSGFGVEKEILFYSLIQKQVLLRIPLSHFATSLTLSPAASLIAVGSNERLLRLIDTSAGTKQDFAAYDDGVHLCRVSPSGNLLLTASYNQVLVWDIQNS", "sequence_length": 1848, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d734888c87fe4f71a8c361516a20b6a6d2ad45e8576d1637c0f0cde457622687", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0JP70.json", "taxon_id": "8364", "uniprot_accession": "A0JP70", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydomonas reinhardtii", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-wdr90-poc16-2nd-pf23393.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23393", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-wdr90-poc16-2nd-pf23393.yaml" } ], "pfam_ids": [ "PF00400", "PF05018", "PF23393" ], "protein_name": "Centriole proteome protein 16", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLAPEWQHPFVNIFKLCDVDTMREFETKGDVTEHIDKIIGKKVFKIRGMIPAGNYLRVPRTKLQTLGLTGRLLYIQLKVTPIKVFAIHIEVVTEDHNIHRISISNMYNPESMKRKSNGVQLPFPKPSHRWCVLAVDLREALRGYTSSPFASVKAVQTCSWMTVRTMFASDYKFSLQSLPGDMALSHALDSSLFEMVWLPAEPQDAPTMDFMPPPKRYGTRARRPGTAETADTAGAAGRKSLSGASAGGAGPAKGGAKAGAAAGGKRAVSSAGATRGTPSQRGSTAGAATPGSGAGGGGHDGEEDFEDDLSEDLDNGAPLPPSPAVPPPLSPSVAARIAGRATSANIGAATAAGAIVGAAAAHPRPGESDASARPFPRPTTALLAGAATTASLRPPIASANVAKPEPGQPAAQPLLPDPALTLTRVNAYSGEFVRCLAWLPGTDEVVFAAASVVVIMGVADPGAAAQQQAAVTPGRQRYCLGHTAFVCALAVASDGRLLASCQEGKEAIVRLWDTANCACLAILNAHASGLSCVDLSPDLRALAAVGLDVQGRQTIALWNIAELRAAGGPKVELVTRHATEYNIKVLKFSAYQEDHLLTAGRDSIRIYRLKAGQLRGTSVRLVPQDKRVTSFAGGVSAAVGPNIFTDIGFEAGVGVYGVDAFKVYVSSASGALFVVDYTTRQLDAIFQLHAAAINCLVVSDGLVLTGGDDRLLRAWPLDFRDYLLEAEHEGAVTGLAMSTDALRLAVGTENGTLGVLAIPTHAYTTLLRSHCGAVNAVAVDPNRDQYCTVSSDGTLRIWHLATHQQLYEFDAPGEAVSAIAYHPHPSHHELAAGFANGRLRVFDVPSTTLLQEHHQHRAGITELLFSPGGDRLFSGGADGALVVYDTARMYAPAQYLSAGVRDIKVCCAVSSNGAFFASLVRDPYRRTTSLLVFHGRTLDPFMRIETDAAAYVKLAFSADCNELWALTSGRRLDRYELKDGQLVQQIHEVSPLELTALCLDPAGRYAATAGADGLLRLWGCVPLPALRGLKGLPPNSAFLGHPSAILGAAFHRSGYLVTVGDADCVCVWRVNADHMQQERGHLAAAAHALRGAAAGGGAAGASPLLLQGAAHHTQATGALDPTDPRSRAHPSTALGPVASARDHQLTTRAAALGTPLPAGVLGLVPAPSAFTGTYTQGMAAPSLGSTVASPTRVTAATANSMAALSLVANSPAVAATAPGLPSHALVVPKPSPPPPSAAPASPGRSPNRALAGAGPARSRLPVPLPPSPQPLPPPPPPRCSWLLGYSPTGSSNVAWNATTGLFCYVVEDMVVMEKLATRQQRYLRGHNRPLSCLAASPDGALVAAGPAAAEPAFTEPAAGARAAQLQQQGVAVGPGGASPTAPFADVVVWEAASGRELWRLRYHPLGVQALAFSPDGRWLVSLGRDPERGVVVWDVAAGLLVAAGRTEQSPRAAAWLWGGHNPAFATAGADGLLLWTLQDNFLEQRTVPLSPTASPRDPRPVTALAVDPHGALLAAEAPAAPGSQVPVWQVQVELQPPQEPGGEAAVAPGGGGGMSAAVVQVAALPSGCVVTAMAAGLDFALLATDGGSVVRYRRSTLSGTWLESSAVRLDGRVAALSAEPNMCDAVAATDTATIWFVGMQDASCVPIVCGQAAPVTGLVPAPHSGRVMASTAADGLLRVWRLGPEDAEPALELHSTSPATAAAFLLRQPTDAPAHTLRHPPSAAPSSAASSSPLDPLDPLPAADAAPARPVLLPAPHLLGGYGDGSLRLFALEPAVQLSWALARHPAPVVGVAPHPRRGLVLSASSDGSLAVTDLSSTRLVSYITAFTAAGPTPHSPGGTGRRSPRGAASPPPAPPRPGTGPLQAMAVSSGPGAPLAALAWRDRLVVFAAPWDDPACSPLAEYDVTPSDGRTDAADSHGLLSPDVPACLAFVNSSSGSSSSGTSAASPGLSAHLGGSSSGAPSSKLLAYASPLLPGTVLLYDVRLAAVARRVRLPQMVRSLAVAPDGGAMVVGCMGRSVFLVHLASGNTEELGGHAGAVAAASYTGDGGHAVTASGSVLMVWDAAQLLKGVTPPPPRMLREF", "sequence_length": 2083, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8ca69a05517117220e9fa09a890e50e297eece058f204e630cf2e659a2acc3cb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8JAN3.json", "taxon_id": "3055", "uniprot_accession": "A8JAN3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cfa20-dom-pf05018.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05018", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cfa20-dom-pf05018.yaml" } ], "pfam_ids": [ "PF05018" ], "protein_name": "Cilia- and flagella-associated protein 20", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLPVQNKAKQ", "sequence_length": 193, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7d49a070746621fe116de91f047dbcb6407013494c54bee6eb5e4a0dbbb4b521", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6B857.json", "taxon_id": "9913", "uniprot_accession": "Q6B857", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cfa20-domain-ipr007714.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007714", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cfa20-domain-ipr007714.yaml" } ], "pfam_ids": [ "PF05018" ], "protein_name": "Protein CFAP20DC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFKNEYQGGAFVEIFSAQGKNPGAKWKILGSPSVIWKEFDKEVKSFVFVLEGSSQTNRIQLPKENKQILGLIQRFLVLQIYIPLGQDFSTELLITDLGNIKRRLYLSTVHKEVSSTPLHAKIPLFMIQRKIWCNLCIDLVAFTSEIFKGAVFQSLDGIIVSANCKLRKIFTLKSKPQETADKDDEPTDIIPRSCQLATDVPHVTQLLNMTKLRQTEIKFGGHPLRSAESEQFISSGAGSVQNSKGQDVCHIAFGSRVLGPPPLSGRRNNLRQSTETVRSIRYKNSQLCQQPTEERSVNSTEVSALLADQQGEKGSARPLKQTTPLPAKLPIPYPHPPQEPSADKGSNRRRLRLKSSSGDRTEAHCGCSSGNNRSEEDVVMALNSIPQLRTEPVRASTPEPPAPEQPDEWIFPESGGLTSDPAWSSPPLLLDEDSHTASNLWLETSKDSEHDQAEETQRAPKDIFTFSSRPRSAPHGKSHDMSPKGCPFTLDTQDDSQVTKEDPKLEGGFYGSESSEEEYNWRNYQPSQMSESELQMLASLRRQQNEDLEDTGAPHGLSASQVDHCNVSISTSSDDTTTWNSCLPPPVNQGRHYQKEMNPPSPSNPRDWLNMLSPPIVPPSQQPVEQSLDSSASLSVQGEEDPRVEEDEEVLTLLYDPCLNCYFDPQTGKYYELV", "sequence_length": 674, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7c497e13001750fd94ee2360a019ae95cb1d752a202450518337bfd05d26e59c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P2K3.json", "taxon_id": "10090", "uniprot_accession": "Q6P2K3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-wdr90-poc16-2nd-pf23393.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23393", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-wdr90-poc16-2nd-pf23393.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/wdr90-beta-prop-4th-pf23342.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23342", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/wdr90-beta-prop-4th-pf23342.yaml" } ], "pfam_ids": [ "PF05018", "PF23342", "PF23393", "PF23409" ], "protein_name": "WD repeat-containing protein 90", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGGSGARETRCRQGSRPGSPGSEVPAASVTGPRAEARPAGGGGGSRRAAPDRCSGGVPSAAWQHPFLNVFRHFRVDEWKRSSKEGDVAVVTDKVLKSAVYRIRGSVSASNYIQLPRTSTQSLGLTGRYLYVLFRPVPTKHFVIHLDVSTEDGQVIRVSFSNLFKEFKSSTTWLQFPFVFETKTPRRDLAGVALPRARWTCLQLDLRDILMFYLGRHYSHLKSIRLCASLLVRNLYTSDLCFDPAVTVTEARRAKLSVNPMPREMAFPVPKGESWHDNYIHVRFPSDCSKVPDEQDEKSCSPPEAVFLGRMSRHLPHPGVLGKPLLSSKSPVAQACSSALPCQVLSASSRLPEVSRTYRYREVSSVSASSIQSQRPSVRDEVPDAHTVSGERHVLADRSSGVPMALEDIGSCRLFLPDPVLRLKGVIGFGGHSTQWALWTKDGVAVVYPCHAVIIVLQIDTGQQRFFLGHTDKVSALALNGSDTLLASAQVQPPSMVRLWDFQTGSCLSLFRSPLHTICSLSFSGSGALLCGVGKDRHGRTVVVAWSTEQAGLGGEVVVLAKVHTDFDIRAFQVAFFDETRMASCGRGSVRLWRLRGGVLRSCAVDLGEYCSLELTDLAFAQALDGHCAPSAGTLFVCSHSGHILEIDHQRMSVQHVRRLLPARSPGAPLAEKQNFSVGSGIAISSLSVSTATCAVGSEDGYLRLWPLDFSSVLLEAEHDGPVSSVSFSPDGLRVLSTTTSGHLGFLDVPSREYTVLARSHMAPVLALSTEPNRGQMATVSLDHTVRIWDLATLQQLYDFSSSEDTPCAVAFHPTMPNFFCGFSSGAVRSFSLESSGVLVEHTRHRGAITSLVITLDGRFLFSSCSQGSLVQYSCADSQCCVLRVAANMVCQDGRPNPNILAVSGDSCRLAFVGPSKCMVTIVESASLDELLRVDVSTLNLASNHLDWAVAICFSPGNSGHLLVSTSSNKVVVLDAVSGHTLRELSSVRSRACCSLALSEDAHLLLAATDRTITVWDYPTQANPSCQVYIGHSEPVHAVAFTPDQLQVISVGDAIFLWDILATPERDGGDHEAPPGHEAGSSSGQLDDLASGASGLPRQQVPIPFQALPPPLSSHDRLLDGSTGTFSTSDEEGLCEENHVSEALLQGQAPTPHVLVDREASGAGDAPRETAGSSWTPAERPSPHSHMSEWSLRSGKAGLPTRPDSYKHFTPRYKTSPRVKSVYFPPIGRERLRLKAIVGYNGNGRANMVWRPDTGFFAYTCGRLVVVEDLHSGTQRHWLGHSQEISTLALNQDGQILASASCCGNTAARCQIRIWDVPKGLCRHLLSHHDTAVQALAFSPDDEFLVTLGDYADRNLALWSMATYELLSSTRLLEPVHGVAFNPWDANELICVGTNAITFWLLQHHGADTCFQVHREPIPEELGASELTSLCYGASPLLYCGSSSGQVCVWDTGTGHCFLAWEADDGEIGVLLCSGSRLISGSNTKRLRLWAVGVVPELRRKGSSARSSSVFMERELTLDGAVVSASFDSGMDMGVVGTTAGTIWYISWTEGTSTRLISGHRTKVNEVVFSPGESHCATCGEDGSVRVWSLASMELVIQFQVLNQSCLCLAWTPPSCELPEQQQVVAGYSDGTLRVFSISRTAMELKMHPHRTALTAIAFSTDGQTILSGDKDGLVAISHPCTGMTFRVLSDHRGAPISAIQSTSKEYGDLGVEGVELWLAASGDQRVSIWVSDWLRDRCELLEWLSFPAPAVSEAPGLLPPSLAAFCPWDKAILVCVGLGAHEEVIFYSLRQKQVIQKTPLPFFAMSLSLSPGSQLMVVGFAECMMRLLDCASGTAQDLEGHDDSVHLCRFTPSGRLLFTAAHNEILVWEVTDP", "sequence_length": 1874, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5111798550f5c2eda973167c6d4a47a08d9647456af80158eed00c727a190484", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZPG2.json", "taxon_id": "10090", "uniprot_accession": "Q6ZPG2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cfa20-domain-ipr007714.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007714", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cfa20-domain-ipr007714.yaml" } ], "pfam_ids": [ "PF05018" ], "protein_name": "Protein CFAP20DC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIKRKIWCNLCIDLVAFTSEIFKGAVFQSLDGIVVSANCKLRKIFTLKSKPQDTADKDAVYGVPFSTDEPTDIIPRSCQLMTDVPHVTQLLNMTKLRQTEIKFGGHPLRSAESDQFINRGTSITRNSKNQDVCHIAFGSKVLGPPPLSGRRNNMKISSETVRSVGSKNNRSCQPSTVEKCVNGTEMSALLIPESEEQGNKENIHQIKQTVPIHAANLHIMHPHPPQEPSADKNNNRRRLRLKSTSRERTETPSGSSSGNNRIEDKASTILTTVSQQGAELLNSGTLGPQSPDQSDEWIFPENADHISYLASSRQSLLLGDDSCNPSHLWLEASKESEHDQQAEESQSVPKDIFTFSSRPRSAPHGKTQTMSPEELSFILDLKEDNSVTSRDTQSEDDFYGGDSSEEGNHSIQGSRGPTTGPSELTQLTLESLLGKAAKRTSKEYLRSAYTEAGATESQDSSMEQIDRNNFEMSLLPTTCLSPTGRRCGSCQKTPEPVIKAKDLSAQQVPASLNKTSLKEISGERLSSIPEASEYDWRNYQPSQMSESELQMLASLRWQQNEELEDAGTSHGLSASQVDNCNVSISTSSDDTTTWNSCLPPPVNQGRHYQKEMNPPSPSNPRDWLNMLSPPIVPPSQQPAEQRPDSCESLSVQGEEDLSVEEDEEVLTLLYDPCLNCYFDPQTGKYYELV", "sequence_length": 689, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "924922e27995bc08cd66842ea12f86fc94f858cd2aa2467c356f4245ff6ef288", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZVT6.json", "taxon_id": "9606", "uniprot_accession": "Q6ZVT6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cfa20-domain-ipr007714.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007714", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cfa20-domain-ipr007714.yaml" } ], "pfam_ids": [ "PF05018" ], "protein_name": "Cilia- and flagella-associated protein 20", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFHNTFQSGLLSVLYSIGSKPLQIWDTQIKNGHVKRITDEEIQSLVLEIMGNNISTAFISCPVDPDKTLGIKLPFFVMVVKNMNKYFSFEVQIIDDKKIKRRFRASNYQSATRVKPFICTMPMRMDEGWNQIQFNLSDFVKRAYGTNYVETLRIQIHANCRIRRVYFADRLYTEDELPAEFKLYLPIRGQLSTQSPAFAMTSE", "sequence_length": 203, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6a0cef2725ebf5a5d59aa1643a198169ea4a8913ab3a54a7809de0fab942eaf9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q86D25.json", "taxon_id": "6239", "uniprot_accession": "Q86D25", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/axonemal-b-tubule-inner-sheath-go0160112.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160112", "section": "canonical_examples", "url": 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"MECPFQIKVCVSDRFFAFPYNLVEPQTAVGNRPTENLVVYVPTDADVLYVEKRNFPRFRSVLVYKHEQDYNGNSQSPKKTGAATIVYWNPLVPITEIGAGETRVFSVLLTNNLFYCNTLIVHHENPTCPIEFTYPGLEMQPVCKLLSGARKSVDMRAHAPPLSYSELRPINCELPLAHFKELTESDKFLLCFNLETPTMVKILCLKRIFCIFQYRKLPARYVINLPHEEVDSLYNKLNWARTRRLLRGDIPSNCATVNRASLQYVKDAQTLLHIAKCSQTIVEFVRIFQQLIFPYQIVPIVIVKLNSLNAKSGQTAHENRVRVFCKNDSVAITTAGCVPVNMPDAAPASTFDNTEFDDVAHLKQVANRVAVDGVFTSGVVVHAVRYNYFL", "sequence_length": 390, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6eb456b5b404aa9fd5e61ea3c35e98a19d9b9244683ca2f69d0e46f80d9f8768", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10348.json", "taxon_id": "262177", "uniprot_accession": "O10348", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/acmnpv-ac109-pf05054.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05054", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/acmnpv-ac109-pf05054.yaml" } ], "pfam_ids": [ "PF05054" ], "protein_name": "Protein AC109", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MECPFQIQVCISDRFFAFPHNLVEPQSDVGNKLIENLIVYVPTDDDRLYIDKKQFPKFNSVLVYRHEHDVNIDSRSPKKTASATIVYWNPLVPITEIGAGETRVFSVLLTNNLFYCNTMIVHHENPKCPIEFTYPETDMQSACSALLKNRNGQSVPPPIKSNLRPIACEIPLSHFKELVESNDFLLCFNLETSTMVKILSLKRIFCIFQYRKQPARYVINLPHEEIDNLYNKLNWERTRRLMKGDVPSNCATVNRSSLKYIKQAQSLLGIPDYSQTVVDFVKMFQKIIFPYQLVPNVIIKLNNFDQMVSSAPNKAEPYKKIRLFCKNDSIAISSSGIVPINMPDFSPPNTFDYSDYANRTNINFVTQRVLTDGGFSSGITVTPVKYNYYL", "sequence_length": 390, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "236816f0e30b13b6077f83abbef6bf3a29ec4aea7f24e4beb740ce94f05c9d8b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41662.json", "taxon_id": "46015", "uniprot_accession": "P41662", "uniprot_release": "2026_03" } ], "pfam_id": "PF05054", "short_name": "AcMNPV_Ac109", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf677-pf05055.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05055", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf677-pf05055.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1170.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0DI78", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05055" ], "protein_name": "UPF0496 protein At3g28290", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "eb3ff7e1ed18a23455bcbb7120c888dd0d49c333d69b97f9d82822910286f11b", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVLSKENMLKYSAHLRAYNSACGDHPELKSFDSELQQKTSNLINSFTSDAKTGLVPLPQHAAYKEFTKHLAEVNQQVSDYIIGYGEVVWENSTLRSLVETYFESAKKTLDIAENVTEYVDEAKRGERYIVAAVAQFEKDKENDVGKKTKRYENTLRELKKFEAMGNPFDGDKFTTLFKLMHKEQESLLERVRETKEKLDEELKNIEMEISSRKKWSIISNVLFIGAFVAVAVGSMVLVCTGVGAGVGVAGLLSLPLIAIGWVGVHTILENKIQAREKQEEALKKAHRIANEMDKGMETDKVDMNSISGKVHALKSKITSMLNAVKDATEDGANEVDTKQVMETLTGDVVELTEDIKAVGDDVAKYSKMIEETSYHVLQKITGSGK", "sequence_length": 385, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "eb3ff7e1ed18a23455bcbb7120c888dd0d49c333d69b97f9d82822910286f11b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DI78.json", "taxon_id": "3702", "uniprot_accession": "P0DI78", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf677-pf05055.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05055", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf677-pf05055.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1170.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml" } ], "pfam_ids": [ "PF05055" ], "protein_name": "UPF0496 protein At3g28300", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLSKENMLKYSAHLRAYNSACGDHPELKSFDSELQQKTSNLINSFTSDAKTGLVPLPQHAAYKEFTKHLAEVNQQVSDYIIGYGEVVWENSTLRSLVETYFESAKKTLDIAENVTEYVDEAKRGERYIVAAVAQFEKDKENDVGKKTKRYENTLRELKKFEAMGNPFDGDKFTTLFKLMHKEQESLLERVRETKEKLDEELKNIEMEISSRKKWSIISNVLFIGAFVAVAVGSMVLVCTGVGAGVGVAGLLSLPLIAIGWVGVHTILENKIQAREKQEEALKKAHRIANEMDKGMETDKVDMNSISGKVHALKSKITSMLNAVKDATEDGANEVDTKQVMETLTGDVVELTEDIKAVGDDVAKYSKMIEETSYHVLQKITGSGK", "sequence_length": 385, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eb3ff7e1ed18a23455bcbb7120c888dd0d49c333d69b97f9d82822910286f11b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DI79.json", "taxon_id": "3702", "uniprot_accession": "P0DI79", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf677-pf05055.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05055", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf677-pf05055.yaml" } ], "pfam_ids": [ "PF05055" ], "protein_name": "UPF0496 protein At1g20180", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKVKNFLGSRLKSFPTRKGKSDKECCRSLTSKLSVNEEYKEAFRTNSYLETRTKAEDQLGITSCSKLSSSSPSPSSSSDLSFHSHFTDYLLDPPQETLDALMQDSSLDNLIVTFFDLSSEACDVCETLLQCLQQIKINHNKIKRVMKIGKRVCNGAKTLECSPEMLCALIFQELSRFAALKNPLCRIVNEAQFRIVHDANSDLLTKLTSKKRRIRRKIRFFKFCKKLGGYSLVITHSAIVITLLIIALHSILGVFAAPALLGLCSFCLLRKKKAKGRMHKSNKDTTLEKLGTQIDIAAKGMFILINDLDTLSRLAGRLCDEIEHRKTVAAMCAKSRKIEVLKEALREFNGHEEKFSDQLQELEEHLYLCFHTINRSRRLVLAQITGQSS", "sequence_length": 390, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc89c287baa88f62ba73a4caab8ee733caea25189230ca245b15d6438a168d84", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6DYE5.json", "taxon_id": "3702", "uniprot_accession": "Q6DYE5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1170.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml" } ], "pfam_ids": [ "PF05055" ], "protein_name": "UPF0496 protein At3g28310/At3g28320", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFSKDKTSRYSEHVDAYRAACGHHPDLKSFDSKIQQRTSNLIDSLTVEAKTGSVSPHAVHKEVIDIHLVEVSKAVADVITECGEEVWENGTLQSLVKDYFNSTMETLKIFETVTQCVHEAKRGQRYIKAAVAQFKKDSEEKDVGVKKKRYGKTLEELMKFKAMGNPFDDGLLKTQFELMNKQQESLFDRVTETKERIAKEIEEVQKRISNVNTATIVSHVVFGAAAFGYAAGCIALMCTGVGAPLGAGMVTLLPVIVVQWVGVNYVLNNSLEALQKQLKALNKVKPIPERITEGMEADKEGMKSVPEQVDELKDQISSLLQTVDDAIGSEGDEVDVKLDMESLEDDVKTLTTKITEVCETVAKYSKIIKEARLHVLEKITGTG", "sequence_length": 384, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "318904539d3db387bf1d616258b7a13a441efcaec09c06934d7cf94a32e903c0", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6E240.json", "taxon_id": "3702", "uniprot_accession": "Q6E240", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1170.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-1170-10-1-20-1170-10.yaml" } ], "pfam_ids": [ "PF05055" ], "protein_name": "UPF0496 protein At3g28270", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALSKDLMLKCSEDMMSAYKSACEEHPKLKSFDASLQQRTNKMIDSLTVEDKNGSSSPHDAHMELSKHLVEVTQGVADFITEIEDDVWDNQALKYLVLAYFENTKKTLEIFKTIENCVENAEMGQLLIREALAEFEKESAEKDVGGKKKKYEKTLEDLKSFKEMGDPFDGKVLTTQFERIKKQQESLLEEVSETRKKIQDEISNLEKKTLITNVVFGAAFAIVAVASIALIATGVGAAAGFGALAAPLLAAGWAGVYTTLDKKKDALNKQLEGLKKVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQISKKVEKLTKKITEVGESVEDHSKLIAKARLQVLQKINR", "sequence_length": 374, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7651acd89690141abeddd9fc4f38fab0ac04454c367108097b1b1d8e319b90de", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LHD9.json", "taxon_id": "3702", "uniprot_accession": "Q9LHD9", "uniprot_release": "2026_03" } ], "pfam_id": "PF05055", "short_name": "DUF677", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05056", "short_name": "DUF674", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml" } ], "pfam_ids": [ "PF05057" ], "protein_name": "Putative lipase ROG1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLTPTNEILFHYKSSVKVGELERYVITYHLYDGEEIPPDLNLNSLWLKVRNMNPLSYRAAYLMGPFMLYCDVKTAQYHHSQKIVASVDYPKFEPNVQTQQDFVAELSVHNIRQKYVWIADVMSQILFTTNTNVTYEVTIGTSKESVENPHDLPSHLGSYSPKLTVNRLTTLDLWNLPVQITTPQKKKHLVVLTHGLHSNVSTDLVYIMEQIYKAQKNYPHEQIVVKGYRGNVCQTEKGVKYLGTRLAEYIIQDLYDESIRKISFVGHSLGGLIQAFAIAYIYEVYPWFFKKVNPINFITLASPLLGIVTDNPAYIKVLLSFGVIGKTGQDLGLENDVEVGKPLLYLLSGLPLIEILRRFKRRTVYANAINDGIVPLYTASLLFLDYNDILEQLQKLKENSKKSPLINDASTPVNQDFFNKTFISPLTKMLSILAPQKFPTENGSEIPKVSFFESASSILLPPLPERAYIMDPDSRDPVIIHDKIYNEDDIPQSEFDIEDGFFGKKNILLQAFFAGKKERAKYRNLEETIARRWHEGMAWRKVVVALKPDAHNNIIVRRKFANAYGWPVIDHLIDVHFNGDDDDDNDENDDINSTQVVEPIQSVTEGKKKYRKAENIPQEYGWLNKVETNGVFDEGPTGMISTVGEIVEALAKRGFSAVIDRRNASEDPNDEVLRFEEMNSDLVQ", "sequence_length": 685, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "71a1363a3456661b9bdc29bd83739b001b738837eb7e1500999656e3dd380a44", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53118.json", "taxon_id": "559292", "uniprot_accession": "P53118", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml" } ], "pfam_ids": [ "PF05057" ], "protein_name": "Putative lipase YDR444W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPYKINRMKNSLEINETGGTLLVDERKRLRIGELYRYKFSVNKDVIKEQGLDVSHLFLRIKNEESALLRPLYLTGPYSFYIDVRPHNYNENRKFPGKEIIPFVENLKPDERFKVKILLNENSRVGDTSLYSWTIDIISQLAVTTIPKLEFSFRIGTTRKVVKKSNGLFKSIEGVSLEMWDTETLWDLPPKFPEKPVHLVIMTHGIFSNIGCDMLYMKDKIEEMTFPMDESINPNIIVRGFMGNVGKSGHGIHCLGVRVGKYVLETVDKLNKKYKVDRISFIGHSLGGPTQSMAVRYISIKRPDFFDAVKGVKPVNFITLASPFIGVIGDFPFYLSVPLDMGALGLTGRDLNLKYTPLTSKDGLYADDEVYPEHSKYILEILPQAPAKKVFESFKRRTIYANVMDDGIVPLRTAALLYLDWRSIHKVQKIRKKNKNSPTSSEFVSSDSPESSGASSPSNENGNNVGEIPAESPNKKATLQWTLPQAVIHGSKINKYKRGQTNEANSDSDNEQGVFLDGQKFEPPKEANTVLSALSVLTAAIPDQEYIKNPAVRKDEVIHDKLYHPEELPPPHYENRPIVKKLIYPNESVNRIQERIAREWQETMTWRKVLVQIQPDSHNNIVVRRRFVNLYGYVAVEHMVEHHFGSKVCSELAEDANEPKDEPNQSSQADRSNEYNEGEISKGAENAT", "sequence_length": 687, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1d871aed5483fc149303c245868fe68454cbd53c8bcf8344b635b77e8d281615", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q04093.json", "taxon_id": "559292", "uniprot_accession": "Q04093", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/phosphatidylethanolamine-lysophospholipase-a1-activity-go0120559.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0120559", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/phosphatidylethanolamine-lysophospholipase-a1-activity-go0120559.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf676-pf05057.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf676-pf05057.yaml" } ], "pfam_ids": [ "PF05057" ], "protein_name": "Lipid droplet phospholipase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSDKHLFVLIHGLWGNYTHMESMRTILSTTLKKEDVNDDMIYFLPKQNAMFKTFDGIEIIGYRTLIEVCEFIRDYKDGKITKLSVMGYSQGGLVARFMIGKMLTEFKELFEDIEPQLFITMATPHLGVEFYNPTGIAYKSALYSALRTLGSTILGKSGREMFIANSSNNILVKLSQGEYLEALSLFKWRIAFANVKNDRTVAFYTAFITDCDPFIDFDNKLKYTFEEKIPGSGYKGILPKIVDLNALNVNSHAPTKPTKTYKKWGRTILIILVATFLILPIALVMNGLGTAYSYIVTCKYRKMLSNGILHNEVRGKLGLTEQLKGYVTDAYGSIINSALDMDANYEASNSNLVNEEELPWKEFIQKYTTINDGVWKSKFKKLPFDENRKVILRNLNKLKWIRVPIYIKAVNAHGVIVARRGMDENTAATGIACIEFTAQLLAYLMHKSN", "sequence_length": 450, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0620ef953649baf7b2f12771a5a5bb21fe931800e018c665128b5c95f81917e0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q08448.json", "taxon_id": "559292", "uniprot_accession": "Q08448", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml" } ], "pfam_ids": [ "PF05057" ], "protein_name": "Putative lipase YDL109C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAGRSADEVLYHNQSSVKLGELERYVITYELYQGDSIPADITLDSLWVKIKNTTKLSYKPAYLLGPFILYCDVRAKDYESSYKIICSADKPVFQSNLQAQQKFIAELSLHHIKPRYVWIVDIVSQILFNKETKVTFEIVVGNSKASLKRKIRCNDSLPDKACNILHTGLSVHRLTTADIWKVPRPIDMSQKSHLVILTHGFQSNVSADMEYLMEEIYKAQMNNPNERLVIKGYMKNACETEKGIKFLGVGLANYIIDELYDDSVGKISFIGHSLGGLTQTFAICYIKTKYPYFFKKVEPINFISLASPLLGIATSTPNYVKMSLSMGIIGTTGQELGLKDGNYGDKPLLYLLSEESLISVLARFKRRTLYANAVNDGIVPLYSSSLLFLDYSQLLQKLGGQTTAPCDPLFQPEVSPIGELPNHSDVANDDDGINASSWNTFWKSKENNCDKKSKRLMNASVIKSMKSVLLSPCPDAKFFSDPDARVATIIHDKIYTEKNLPPPSPTLYEGTAAKEGETRKTRKEMEEIIARRWHKGMHWRKVVVLLKPDAHNNIIVRRRFSNAYGWPVVDHLVTAHFQRDDPIASPMQDKQFAEEDINMATGGVEPNKFYSWLTKIEDPSVYHGGIVSTASQLASSWISKHSSVTD", "sequence_length": 647, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cddb8a98485ff66c2ada91ec8e3e2e1d1494c1d6a03648800c3771c380778778", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12103.json", "taxon_id": "559292", "uniprot_accession": "Q12103", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3657-pf12394.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12394", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3657-pf12394.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf676-pf05057.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf676-pf05057.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q49AJ0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05057", "PF12394" ], "protein_name": "Protein FAM135B", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "cc227836af107648bc58a51a859772a3bea5a1f6c12ae3b659bfe34a0af9d452", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSEIQGTVEFSVELHKFYNVDLFQRGYYQIRVTLKVSSRIPHRLSASIAGQTESSSLHSACVHDSTVHSRVFQILYRNEEVPINDAVVFRVHLLLGGERMEDALSEVDFQLKVDLHFTDSEQQLRDVAGAPMVSSRTLGLHFHPRNGLHHQVPVMFDYFHLSVISVTVHAALVALQQPLISFTRPGRGSWLGKGGPDTGQEQSIISLENLVFGAGYCKPTSSEGSFYITSENCMQHAHKWHRDLCLLLLHAYRGLRLHFLVIMRDIPELPHTELEALAVEETLSQLCSELQMLNNPEKIAEQISKDLAWLTSHMMTLWTQFLDTVTLHSQVTTYLTQEHHTLRVRRFSEAFFYMEHQKLAVLTFQENLIQTHSQLSLDIRNSEYLTSMPPLPAECLDIDGDWNTLPVIFEDRYVDCPATGHNLSVYPNFDVPVTSPTIMNLKDKEDNCMVNSNLSFREDLVLSTIKPSQMDSDEEVIRCPEPGENVATQNHMDMCSESQVYISIGEFQNKAGVPEDECWTGQTSDAGTYPVADVDTSRRSPGPEDGQAPVLTYIDVKSSNKNPSRAEPLVAFNAQHESRSSRDKYGLDRTGLSKVVVGGSHQNAISSDKTTLHELSTLGKGIDQEGKMVLLSLKLTPSEPCDPLSSTLREPLDIRSSLKDSHTEEQEELSVLSGVIKRSSSIISDSGIESEPSSVAWSEARSRALELPSDREVLHPFVRRHALHRNSLEGGHTESNTSLPSGIQASLTSISSLPFEEDEREVALTKLTKSVSAPHISSPEEAAEDADTKQQDGGFAEPSDMHSKSQGSPGSCSQLCGDSGTDAGADHPLVEIVLDADNQQGPGYIDIPKGKGKQFDAQGHCLPDGRTENTPGVETKGLNLKIPRVIALENPRTRSLHRALEETPKGMPKDLNVGQQALSNSGISEVEGLSQHQVPELSCTSAADAINRNSTGQQSQSGSPCIMDDTAFNRGVNAFPEAKHKAGTVCPTVTHSVHSQVLKNQELKAGTSIMGSHLTSAETFTLDSLKAVEVVNLSVSCTATCLPFSSVPKETPARAGFSSKQTLFPITHQPLGSFGVVSTHSSTLDEEVSERMFSFYQAKEKFKKELKIEGFLYSDLTVLASDIPYFPPEEEEENLEDGIHLVVCVHGLDGNSADLRLVKTFIELGLPGGKLDFLMSEKNQMDTFADFDTMTDRLLDEIIQHIQLYNLSISRISFIGHSLGNIIIRSVLTRPRFRYYLNKLHTFLSLSGPHLGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKTGLQYFKNVVLVASPQDRYVPFHSARIEMCKTALKDRHTGPVYAEMINNLLGPLVEAKDCTLIRHNVFHALPNTANTLIGRAAHIAVLDSELFLEKFFLVAGLNYFK", "sequence_length": 1406, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "cc227836af107648bc58a51a859772a3bea5a1f6c12ae3b659bfe34a0af9d452", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q49AJ0.json", "taxon_id": "9606", "uniprot_accession": "Q49AJ0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml" } ], "pfam_ids": [ "PF05057", "PF12394" ], "protein_name": "Protein FAM135A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPARIPHRVEASLLHATGMTLAFPASVHDALVCSKTFQILYKNEEVVLNDVMIFKVKMLLDERKIEETLEEISFLLSLGLHFTDGDYSADDLNALQLISSRTLKLHYSICRGLHHHANVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKTTWLNRNAPAQSKDSAIPTLESVVFGINYTKQLSPDGCSFLIAESFLHHAYHFHYTLCATLLLAFKGLHSYFITVTEEIPSCQKLDLEEMDVEARLTELCEEVKKVENPDELAELINMNLAQLCSLLMALWGQFLEAITLHEDLRVLLAQEHHTLRVRRFSEAFFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVIEDLDAPWMGIQSLQISEASKTDKHETEESSVVGLSSPELKVRPAVASSNCYTEGEKQLTKSLKGKNEESNKSKVKVTKLMKTMKPENTKKLIKQNSKDSVVLVSYKCLKTTASSDFTKCLEGSPSHSQKEGLDPTLCAGNFDPKTYTRQPSQKEASSLSANTDRSEHKSPDTENMQPDQFELLNSGSLNLCANLSISGKLAISQDNSDIPDTEHNLASTSSSNDCHDYQTTPSSGVRTLEVKSSSKESFNGEKITVKIGPWTELQEAELFVDNLLPDFEALDSNDKPKSIDIPLERDALQETKCHSTEESLTKFRSNLPAPSTKEYHVAVSSDTIKLPDTNATYASSRFSDSGVESEPSSFATHPNPEIAFETLQGPGPCNNERLFPQLLMKPDHNVKFSLGSHCTESTSALSEIQSSLTSINSLPSDDELSPDDNCKKSAVPDCHLSDSKTVFNLGTMDLPKCDDTKKSSIILQQQSVVFSGHLDNDTLAMHSLDLSTEDPLRLVFLDEDASSGVRSSWGSKPHLDAPFTGPQSQGTSSNNSTESVPTLNSKLICLGSPCVVSGSVCTDAGLSADRTVEGKSGEPLNHKQVCSAAPVVESDPLSSSTDVVKQGLVENYFGSQSTTDVSDACAITCHSPVSSQETCDKGISDLQQEQGKEEEEEDQEMVQNGYHEETDFSATDGTVSVHYISGNELGEGRHEQSEKLSSNYLSAGVTVPAVCTSGCLSFPSALRESPCVKYSSRSKVDAITKQPSSISYNFSSSTSWYENSPKPQIHAFLQAKEELKQLRLPGFMYSDVPLLASSAPYFSMDEEDGSEDGVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRVDFLMSERNQNDTFADFDCMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFKYYLSKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKGCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ", "sequence_length": 1506, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "265a2fde1997256d819405cd6a4a4029985a04d63dd47dfb01a9645ed3b0af24", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NS59.json", "taxon_id": "10090", "uniprot_accession": "Q6NS59", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3657-pf12394.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12394", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3657-pf12394.yaml" } ], "pfam_ids": [ "PF05057", "PF12394" ], "protein_name": "Protein FAM135B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEVQGTVEFSVELHKFYNVDLFQRGYYQIRVTLKVSSRIPHRLSASIVGQSESSSLHSACVHESAVHSRVFQILYRNEEVSINDAMLFRVHLLLDGERVEDALSEVEFQLKVDLHFTDSEQQLRDVTGTPMISSRTLGLHFHPRRGLHHQVPVMFDYFHLSVISVAIHAALVALQQPLISFTRPGRGSWLGKGGPDTGPEQPTISLENLVFGAGYCKPTSSEGSFYVPSENCIQHAHKWHRDLCLLLLHAYQGLRLYFLVIMRDIPELPTMELEALAVEETLSQLCSELQMLNNPEKIAEQISKDLAWLASHLMALWTQFLDTVTLHSQVTTYLTQEHHTLRVRRFSEAFFYMEHQKLAVLTFQENLIQTHSQLSLDIRNSEYLTSMPPLPAECLDIDGDWNTLPVIFEDRYVDCPVSGHNLSVYPNFDVPVTSPAIMNLKGKEKNLINQNSSSRKDIPLSTTEAPQLGSDEDVTRRPEVQENVSTWNPIDVCSESQVYLTIGEFQNRAGIPEDECWTGPRPDAVKDSLTDTDICSRSPGPDEGQTPALTYIDVQSSNKYCPRAELVQGINVQHEHRSSRESYGIVKTVPSKVVAGTSQNNSTSLNQTAALELRTLGRGVNQDGKPVLLSLKLTPAEPCDPPSTALREALDTKPSQPDHAEEPEDLSALSGVIKRSASIISDSGIESEPSSVAWSEARSRALELPSDRDVLHQVVRRHAHHRNSLEGGHTESNTSLPSGIQASLSSISSLPFEEEERELALNKLTKSVSAPQISSPEESAEGADTIKNTAGFSEDLDPSSKENSPPRHTSLSYGGSRVQDVRAGHSLADIALDSDRPQGPGYMDIPNDKGNHPELQEPCCLDGMAETPLHVETKGLNLKIPCTIVLENSKSRSFHRAAGETAKGKPEELSMSKCVLSNNSISEVRAASHHRVPEISCSPAVEAVNLNSTGVQNSSLSVNDTMTLNRRHNASLEAKHEAGTVCPTVTHTIASQVSRNQELKTGTSISGSHLNSTEAFTLDSLKAVEVVNLSVSCTATCLPFSSVPKETPARAGLSSKQNPAPITHQPLGSFGVVSTYSSKLEEEVSERMFSFYQAKEKFKKELKIEGFLYSDLSVLASDIPYFPPEEEEENLEDGIHLVVCVHGLDGNSADLRLVKTFIELGLPGGKLDFLMSEKNQTDTFADFDTMTDRLLDEIIQHIQLYNLSISRISFIGHSLGNIIIRSVLTRPRFRYYLNKLHTFLSLSGPHLGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKTGLQYFKNVVLVASPQDRYVPFHSARIEMCKTALKDRHTGPVYAEMINNLLGPLVEAKDCTLIRHNVFHALPNTANTLIGRAAHIAVLDSELFLEKFFLVAGLNYFK", "sequence_length": 1403, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d4af05113dd15dd8a416233acaa026cff0df4709af5bc5c2c99468dfba2924d6", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DAI6.json", "taxon_id": "10090", "uniprot_accession": "Q9DAI6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3657-pf12394.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12394", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3657-pf12394.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf676-pf05057.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf676-pf05057.yaml" } ], "pfam_ids": [ "PF05057", "PF12394" ], "protein_name": "Protein FAM135A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPSRIPHRVEASLLHATGMTLAFPASVHDSLICSKTFQILYKNEEVVLNDVMIFKVKMLLDERKIEETLEEMNFLLSLDLHFTDGDYSADDLNALQLISSRTLKLHFSPHRGLHHHVNVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKTTWLNRNAPAQNKDSVIPTLESVVFGINYTKQLSPDGCSFIIADSFLHHAYRFHYTLCATLLLAFKGLHSYFITVTEEIPSCQKLELEEMDVEARLTELCEEVKKIENPDELAELINMNLAQLCSLLMALWGQFLEVITLHEELRILLAQEHHTLRVRRFSEAFFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVTEDLDAPWMGIQNLQRSESSKMDKYETEESSVAGLSSPELKVRPAGASSIWYTEGEKQLTKSLKGKNEESNKSKVKVTKLMKTMKSENTKKLIKQNSKDSVVLVGYKCLKSTASNDLIKCFEGNPSHSQKEGLDPTICGYNFDPKTYMRQTSQKEASCLPTNTERTEQKSPDIENVQPDQFDPLNSGNLNLCANLSISGKLDISQDDSEITQMEHNLASRRSSDDCHDHQTTPSLGVRTIEIKPSNKDPFSGENITVKLGPWTELRQEEILVDNLLPNFESLESNGKSKSIEITFEKEALQEAKCLSIGESLTKLRSNLPAPSTKEYHVVVSGDTIKLPDISATYASSRFSDSGVESEPSSFATHPNTDLVFETVQGQGPCNSERLFPQLLMKPDYNVKFSLGNHCTESTSAISEIQSSLTSINSLPSDDELSPDENSKKSVVPECHLNDSKTVLNLGTTDLPKCDDTKKSSITLQQQSVVFSGNLDNETVAIHSLNSSIKDPLQFVFSDEETSSDVKSSCSSKPNLDTMCKGFQSPDKSNNSTGTAITLNSKLICLGTPCVISGSISSNTDVSEDRTMKKNSDVLNLTQMYSEIPTVESETHLGTSDPFSASTDIVKQGLVENYFGSQSSTDISDTCAVSYSNALSPQKETSEKEISNLQQEQDKEDEEEEQDQQMVQNGYYEETDYSALDGTINAHYTSRDELMEERLTKSEKINSDYLRDGINMPTVCTSGCLSFPSAPRESPCNVKYSSKSKFDAITKQPSSTSYNFTSSISWYESSPKPQIQAFLQAKEELKLLKLPGFMYSEVPLLASSVPYFSVEEEDGSEDGVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRIDFLMSERNQNDTFADFDSMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFKYYLNKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKDCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ", "sequence_length": 1515, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bde7abce2076da8c80cb2a7340d55daa379a44846d422e96af02a4d77e2d09fc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9P2D6.json", "taxon_id": "9606", "uniprot_accession": "Q9P2D6", "uniprot_release": "2026_03" } ], "pfam_id": "PF05057", "short_name": "DUF676", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ndufa12-pf05071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ndufa12-pf05071.yaml" } ], "pfam_ids": [ "PF05071" ], "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSWWSGVWRSVWSALSREVREHVGTDHLGNKYYYVAEYKNWRGQTIREKRIVEAANRKEVDYEAGDIPTEWEAWIRRTRKTPPTMEEILKNEKYREEIKIKSQDFYEKDKLGKETSEELLPSPTATQVKGHASAPYFGREEPSVAPTSTGKTFQPGSWTPEDGKRQSQ", "sequence_length": 168, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a54593b2a25e0cc5825e0b220a22d484b48902a189a01bae77dc696ab7a0c513", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q59J78.json", "taxon_id": "10090", "uniprot_accession": "Q59J78", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ndufa12-pf05071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ndufa12-pf05071.yaml" } ], "pfam_ids": [ "PF05071" ], "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELVEVLKRGVQQVTGHGGLRGLLRVFFRANDIRIGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTTNPPTARKFIWTNHKFNVSATPEQYVPYSTTRKKIHEWVPPSTPYK", "sequence_length": 145, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ab093c1c832a8965f39fa60c8b47316c9f3650d3e4e6288e869f6106631e9b6e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q7TMF3.json", "taxon_id": "10090", "uniprot_accession": "Q7TMF3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ndufa12-pf05071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ndufa12-pf05071.yaml" } ], "pfam_ids": [ "PF05071" ], "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGWSQDLFRALWRSLSREVKEHVGTDQFGNKYYYIPQYKNWRGQTIREKRIVEAANKKEVDYEAGDIPTEWEAWIRRTRKTPPTMEEILKNEKHREEIKIKSQDFYEKEKLLSKETSEELLPPPVQTQIKGHASAPYFGKEEPSVAPSSTGKTFQPGSWMPRDGKSHNQ", "sequence_length": 169, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "11c727dec3b99dd071e482ec7b9f24e6cd1a296bbad0a5497cee78de21388e70", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N183.json", "taxon_id": "9606", "uniprot_accession": "Q8N183", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ndufa12-pf05071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ndufa12-pf05071.yaml" } ], "pfam_ids": [ "PF05071" ], "protein_name": "Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALTVAKSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLGDTQYGRHRWVEYASKDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKENFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKTQ", "sequence_length": 159, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b6e48da2e97ee952735091c076e6841108fd474ab5be2cfb22d45655f47ec08a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M9M9.json", "taxon_id": "3702", "uniprot_accession": "Q9M9M9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ndufa12-pf05071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ndufa12-pf05071.yaml" } ], "pfam_ids": [ "PF05071" ], "protein_name": "Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLKAWLGIDKIQKFGQMVKEIGGVKAVLKKRYLMDATRVGTLVGSDNFGNRYYENNAYFVPRNRWVEFPDKVWLDYDATQVPPEWHSWLHHITDDAPSVKPPPTQDWVLEHKENTSIYADKKYVPYSTTRTKIQGWQPGEKPQFD", "sequence_length": 146, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "97f7836f69925c72e0bc3c3521777f3d75cff2d9e7f92be01410e2b4d9af1c0a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9N2W7.json", "taxon_id": "6239", "uniprot_accession": "Q9N2W7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ndufa12-pf05071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ndufa12-pf05071.yaml" } ], "pfam_ids": [ "PF05071" ], "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELVQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYSTTRKKIQEWIPPSTPYK", "sequence_length": 145, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "28e083beca9d33c94f7e295839174332572b195698223ab23949c772cca7f79a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UI09.json", "taxon_id": "9606", "uniprot_accession": "Q9UI09", "uniprot_release": "2026_03" } ], "pfam_id": "PF05071", "short_name": "NDUFA12", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05075", "short_name": "DUF684", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Monkeypox virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf678-pf05077.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05077", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf678-pf05077.yaml" } ], "pfam_ids": [ "PF05077" ], "protein_name": "Protein OPG146", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSTNMRSGMKSRKKKPKTTVIDDDDDCMTCSACQSKLVKISDITKVSLDYINTMRGNTLACSACGSSLKLLNDFAS", "sequence_length": 77, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "599aab04a0f62b235682aec9fae71f2f639c69221dba9c600d04bbbbb757c19f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A7H0DNB8.json", "taxon_id": "10244", "uniprot_accession": "A0A7H0DNB8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Variola virus (isolate Human/India/Ind3/1967)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf678-pf05077.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05077", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf678-pf05077.yaml" } ], "pfam_ids": [ "PF05077" ], "protein_name": "Protein OPG146", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSTNARSGMKSRKKKPKTTVIDEDDCMTCSVCQSKLVKISDITKVSLDYINTMRGNTLACTACGSSLKLLNDFAS", "sequence_length": 76, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "769356c3f18885a7e226013b015260a6c2068ea9d2feece1fe2051f3b3675889", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P33842.json", "taxon_id": "587200", "uniprot_accession": "P33842", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vaccinia virus (strain Western Reserve)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf678-pf05077.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05077", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf678-pf05077.yaml" } ], "pfam_ids": [ "PF05077" ], "protein_name": "Protein OPG146", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSTNVRSGMKSRKKKPKTTVIDDDDDCMTCSACQSKLVKISDITKVSLDYINTMRGNTLACAACGSSLKLLNDFAS", "sequence_length": 77, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6c9d4cab239eee2434e3add89b2edff1204023182b67e02b5f08c376dacf2501", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P68714.json", "taxon_id": "10254", "uniprot_accession": "P68714", "uniprot_release": "2026_03" } ], "pfam_id": "PF05077", "short_name": "DUF678", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/fusion-of-sperm-to-egg-plasma-membrane-involved-in-double-fertilization-forming--go0061936.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/fusion-of-sperm-to-egg-plasma-membrane-involved-in-double-fertilization-forming--go0061936.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf679-pf05078.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05078", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf679-pf05078.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O80493", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05078" ], "protein_name": "Protein DMP8", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "97553f51e868911847168a5242a5dbd4c37e8c4aab3c3dcedea9d2332c0ad0b2", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEKTEESVGIRVYTTTTTQNPSPTSSRSPKPVPLSSLPMLPAGAAAGGGKGRKRRMVAKGVQKTVSKTSMLVNFLPTGTLLMFEMVLPTIYRDGDCNGINTLMIHLLLLLCAMSCFFFHFTDSFKASDGKIYYGFVTPRGLAVFMKPPSPGFGGGDVIAEKEIPVTDERYKLRVNDFVHSVMSVLVFMAIAFSDRRVTGCLFPGKEKEMDQVMESFPLMVGIVCSALFLVFPTSRYGVGCMST", "sequence_length": 243, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "97553f51e868911847168a5242a5dbd4c37e8c4aab3c3dcedea9d2332c0ad0b2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O80493.json", "taxon_id": "3702", "uniprot_accession": "O80493", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/abscission-go0009838.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/abscission-go0009838.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/dehiscence-go0009900.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/dehiscence-go0009900.yaml" } ], "pfam_ids": [ "PF05078" ], "protein_name": "Protein DMP7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEETKQSLIASLPSAPRKPKSKVERVVRKTFKGTAHLSNLLPTGSVMSFQIMCPVLTHQGQCPTITSRWLTCFLVSLCAISCFLFSFTDSIRDPNGKVRYGLATWSGLLVMDGSITLTEEEKEKYKLKILDFIHAIMSMLVFFAVSMFDQNVTRCLFPVPSEETKEILTSLPFVIGVICGAFFLAFPTRRHGIGSPLTKE", "sequence_length": 200, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "08b9a4d6b31940584984d0caad8780459c9e55854d9cd94ffbc4e6a03f171b14", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5XV67.json", "taxon_id": "3702", "uniprot_accession": "Q5XV67", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/abscission-go0009838.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/abscission-go0009838.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/plant-organ-senescence-go0090693.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090693", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/plant-organ-senescence-go0090693.yaml" } ], "pfam_ids": [ "PF05078" ], "protein_name": "Protein DMP4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEIKVDEGHQKGTKEDITRPLLEEDKDFPDIERTTWIQKAIGQTFQTTAHLANLLPTGTVLAFQLLSPIFSNGGQCDLVSKIMTSTLVAICGFSCFILSFTDSYKDKNGTICYGLATIHGFWIIDGSTTLPQELSKRYKLRFIDFVHAFMSLFVFGAVVLFDRNAVNCFFPSPSAEALEVLTALPVGVGVFSSMLFATFPTTRNGIGFPLSSK", "sequence_length": 213, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3c5a5c83895673a43212606ce55ccd95bc7a75517e58bcf0c332c3db0487b481", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8L928.json", "taxon_id": "3702", "uniprot_accession": "Q8L928", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/endomembrane-system-organization-go0010256.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010256", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/endomembrane-system-organization-go0010256.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/fusion-of-sperm-to-egg-plasma-membrane-involved-in-double-fertilization-forming--go0061936.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/fusion-of-sperm-to-egg-plasma-membrane-involved-in-double-fertilization-forming--go0061936.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf679-pf05078.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05078", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf679-pf05078.yaml" } ], "pfam_ids": [ "PF05078" ], "protein_name": "Protein DMP9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKTEESVGIRVYTATPPQKPSPSPPSRSPKPVLISSLPSLPSGAAAGGGRGRKRRMVAQGVQKTVSKTSMLVNFLPTGTLLMFEMVLPSIYRDGDCNGINTLMIHLLLLLCAMSCFFFHFTDSFKASDGKIYYGFVTPRGLAVFMKPPPPEFGGGDVIAEAEIPVTDDRYKLTVNDFVHAVMSVLVFMAIAFSDRRVTGCLFPGKEKEMDQVMESFPIMVGIVCSALFLVFPTTRYGVGCMTG", "sequence_length": 244, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "637314e0aae2bef0b57a80cc18fe1c7211b76bafbec3e612008c51a3151572a7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FK96.json", "taxon_id": "3702", "uniprot_accession": "Q9FK96", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/abscission-go0009838.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/abscission-go0009838.yaml" } ], "pfam_ids": [ "PF05078" ], "protein_name": "Protein DMP2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKTFKAIRDRTYSGVGDLIKLLPTGTVFLFQFLNPVLTNNGHCLLINKYLTGVLIVICAFSCCFTCFTDSYRTRDGYVHYGVATVKGLWPDSSSVDLSSKRLRVGDFVHAFFSLIVFSVISLLDANTVNCFYPGFGSAGKIFLMVLPPVIGVISGAVFTVFPSRRHGIGNPSDHSEDDASEMK", "sequence_length": 184, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8d82cb9b05568b9acc9cae31d3e27940f130712272890ad330724aa0bc69d1ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LVF1.json", "taxon_id": "3702", "uniprot_accession": "Q9LVF1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/endomembrane-system-organization-go0010256.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010256", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/endomembrane-system-organization-go0010256.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/plant-organ-senescence-go0090693.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090693", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/plant-organ-senescence-go0090693.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf679-pf05078.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05078", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf679-pf05078.yaml" } ], "pfam_ids": [ "PF05078" ], "protein_name": "Protein DMP1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSETSLLIPKTNSPASSENMANTNKSLTGLESLIKLLPTGTLFIYLLLNPVLTNDGECSTGNKVMSSILVALCSFSCVFSCFTDSFKGVDGSRKFGIVTKKGLWTYAEPGSVDLSKYKLRIADFVHAGFVLAVFGTLVLLDANTASCFYPRFRETQKTLVMALPPAVGVASATIFALFPSKRSGIGYAPIAEEVGAEEETKKASVSA", "sequence_length": 207, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ec89226862cd3cd3c59966068bc41ee432b66733a4e28101225242761368e188", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LVF4.json", "taxon_id": "3702", "uniprot_accession": "Q9LVF4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/plant-organ-senescence-go0090693.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090693", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/plant-organ-senescence-go0090693.yaml" } ], "pfam_ids": [ "PF05078" ], "protein_name": "Protein DMP3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSPSSLTQRNPTSSQEQSESVPQLRRQTSQHAVMSQTLTSAANLANLLPTGTLLAFTLLIPVFTSNGSCDYPTQVLTIVLLTLLSISCFLSSFTDSVKAEDGNVYYGFATRKGMWVFDYPDPDGLGLPNLSKYRIRIIDWIHAVLSVLVFGAVALRDKNAVSCFYPAPEQETKKVLDIVPMGVGVICGMLFLVFPARRHGIGYPVTGDGGRR", "sequence_length": 213, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "37390a8187b66201918cd43088c47358792b36ee7d00ce7a1093967b2cefefe0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9STW3.json", "taxon_id": "3702", "uniprot_accession": "Q9STW3", "uniprot_release": "2026_03" } ], "pfam_id": "PF05078", "short_name": "DUF679", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05079", "short_name": "DUF680", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Beak and feather disease virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf681-pf05080.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05080", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf681-pf05080.yaml" } ], "pfam_ids": [ "PF05080" ], "protein_name": "Uncharacterized protein ORF5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGGAYITSRYWLVPAHVTSRLRLTSFTGHRGVARVDGPMSSLGLNIIKCAVNGGMDMTGKMSSSWTIFMGGYLIARCSASATVIHIKCQSRALLWSLPARG", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ca1e674851e70ead0784d00a2deb7b89a1b134b1fb075f2757567b587745c273", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9YUD2.json", "taxon_id": "77856", "uniprot_accession": "Q9YUD2", "uniprot_release": "2026_03" } ], "pfam_id": "PF05080", "short_name": "DUF681", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/acmnpv-p18-pf05081.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05081", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/acmnpv-p18-pf05081.yaml" } ], "pfam_ids": [ "PF05081" ], "protein_name": "P18 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATSKTIVLYLCQAPATASLYVSADTDADEPIIYFENITECLTDDQCDKFTYFAELKQEQALFMKKVYKHLVLKNEGAFNKHHVLFDAMIMYKTYVHLVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLNLIGIEIVN", "sequence_length": 161, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "712641a49a05d40009cb5286106fa709a4a36aa99e98c2c7ba302cfa4f1b1b69", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41481.json", "taxon_id": "46015", "uniprot_accession": "P41481", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/acmnpv-p18-pf05081.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05081", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/acmnpv-p18-pf05081.yaml" } ], "pfam_ids": [ "PF05081" ], "protein_name": "P18 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVKEVRLYLCPVPPSVALSVGDADADEPMIYFENITECLTDASCDKLACFAELKQEQALFMKKLYKHMVLKSDGAYNKHHVLFDLMVMYKTYVQLADESAFGSNVLHYCEQFITGAFEVFGLGSRVAVLVPPGWENDNLSVLLKHLHGLHLIAIDIVQ", "sequence_length": 159, "sequence_origin": "UNIPROT_FETCH", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ciapin1-pf05093.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dre2-n-pf16803.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16803", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dre2-n-pf16803.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/fe-s-cluster-assembly-protein-dre2-n-terminal-domain-3-40-50-11000.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.50.11000", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/fe-s-cluster-assembly-protein-dre2-n-terminal-domain-3-40-50-11000.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P36152", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05093", "PF16803" ], "protein_name": "Fe-S cluster assembly protein DRE2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d5e0237e375fbcf76eac9c04288e6c90003bc3d9b724a78fc885e8cce28c61b2", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSQYKTGLLLIHPAVTTTPELVENTKAQAASKKVKFVDQFLINKLNDGSITLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIGLSDIYKVDALINGFEIINEPDYCWIKMDSSKLNQTVSIPLKKKKTNNTKLQSGSKLPTFKKASSSTSNLPSFKKADHSRQPIVKETDSFKPPSFKMTTEPKVYRVVDDLIEDSDDDDFSSDSSKAQYFDQVDTSDDSIEEEELIDEDGSGKSMITMITCGKSKTKKKKACKDCTCGMKEQEENEINDIRSQQDKVVKFTEDELTEIDFTIDGKKVGGCGSCSLGDAFRCSGCPYLGLPAFKPGQPINLDSISDDL", "sequence_length": 348, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d5e0237e375fbcf76eac9c04288e6c90003bc3d9b724a78fc885e8cce28c61b2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P36152.json", "taxon_id": "559292", "uniprot_accession": "P36152", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anamorsin-c-terminal-ipr046408.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046408", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/anamorsin-c-terminal-ipr046408.yaml" } ], "pfam_ids": [ "PF05093" ], "protein_name": "Anamorsin homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSILSDFLKHPNLLQVTDGGPLVDGTNGVKGTRVVGSVSNARELRGADSLVGDVERAIIQVQETELLAEVCNTVFDVMKQNGEVIVFSQDLTTAQRKLRIAGFRVTEVAAEFPVRGIKLVNFGEKVALDLGVVADEDLIDEDGLLQEEDFEKPTGDQLKAGGCGPDDPNKKKRACKNCSCGLAEQEELEKMGQIAAEPKSSCGNCSLGDAFRCSTCPYLGQPPFKPGETVKISTVDDF", "sequence_length": 238, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60a1848118c8be81a7680b88fa255d97bd510c757ee9e5cfc36f52877c69bd5e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41847.json", "taxon_id": "6239", "uniprot_accession": "P41847", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/anamorsin-n-pf20922.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20922", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/anamorsin-n-pf20922.yaml" } ], "pfam_ids": [ "PF05093", "PF20922" ], "protein_name": "Anamorsin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADLGLQKGKRVLLIWTQPSSSSALKQFAESIAAVVGDQSLVSLENSERLLLSSHNASSYDCVLSGLLTDSSLIHSSEMLVEMARVMKPGGTLVLEEPVTGSEDTGVRTAEKLMSAIKLAGLVSVTEVKTEPLSPKAAAALTERTGFSGNTLSRVRMTASKPDFEVGSSTQLKLSFGKKKTTTVKPALDPGTAQKWTLSANDMDDDDVDLVDSDALLDADDLKKPDPSSLKASCGDDSKKKKKACKNCTCGLAEELEQESKAAQKASQPKSACGNCYLGDAFRCGSCPYLGMPAFKPGEKVLLANTDIADK", "sequence_length": 311, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ac6481d58ed1f448f18e3062d40b8c5b530a16ab250db7099c49a9e76b974edb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6AZB3.json", "taxon_id": "7955", "uniprot_accession": "Q6AZB3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anamorsin-c-terminal-ipr046408.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046408", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/anamorsin-c-terminal-ipr046408.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anamorsin-n-terminal-domain-metazoan-type-ipr049011.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049011", "section": 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"data/traits/sequence/domain/pfam/ciapin1-pf05093.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05093", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ciapin1-pf05093.yaml" } ], "pfam_ids": [ "PF05093", "PF20922" ], "protein_name": "Anamorsin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITKKSSPSVKPAVDPAAAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAASCGEGKKRKACKNCTCGLAEELEKEKSREQMSSQPKSACGNCYLGDAFRCASCPYLGMPAFKPGEKVLLSDSNLHDA", "sequence_length": 312, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b329fa7c84be89afcdd742b6ce2de9909c1f5a99409924ed3be007190d670ae2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6FI81.json", "taxon_id": "9606", "uniprot_accession": "Q6FI81", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anamorsin-c-terminal-ipr046408.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046408", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/anamorsin-c-terminal-ipr046408.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ciapin1-pf05093.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05093", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ciapin1-pf05093.yaml" } ], "pfam_ids": [ "PF05093" ], "protein_name": "Anamorsin homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSMMNQKTVLAVTDDVVLPVSSVLAIMKELGKEVIESFDPLIITQASTINQFPLDASSVEAVLAISKTSDFPSDKICGEFSRILKPGGTVSVCKVLEGETGEIQQTIQRRVTLAGFLEPQCLDLKSIKLSTFSLSFGIKAKKPSWKIGSSFALKKPVTNLFKIDLDDDVDLIDEDSLLTEEDLMKPQLPVASGCETTKKACKNCVCGRAEIEEKAVKLGLTEDQIENPQSSCGSCGLGDAFRCGTCPYKGLPPFKLGEKVTLSQNFLEADI", "sequence_length": 272, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ec319bbf7d830a02be88ce1d8cd9e28b074a7730c850474acb81b91f84aa5775", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8L7Z3.json", "taxon_id": "3702", "uniprot_accession": "Q8L7Z3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/cytosolic-4fe-4s-assembly-targeting-complex-go0097361.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097361", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/cytosolic-4fe-4s-assembly-targeting-complex-go0097361.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anamorsin-c-terminal-ipr046408.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046408", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/anamorsin-c-terminal-ipr046408.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anamorsin-n-terminal-domain-metazoan-type-ipr049011.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049011", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/anamorsin-n-terminal-domain-metazoan-type-ipr049011.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/anamorsin-n-pf20922.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20922", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/anamorsin-n-pf20922.yaml" } ], "pfam_ids": [ "PF05093", "PF20922" ], "protein_name": "Anamorsin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEFGISPGQLVAVFWDKSSPEEALKKLVARLQELTGSEGQVFMENVTQLLQSSHKESSFDVILSGVVPGSTSLHSAEVLAEMARILRPGGCLFLKEPVETAEVNNDKMKTASKLCSALTLSGLVEIKELQREALSPEEVQSVQEHLGYHSDSLRSVRVTGKKPNFEVGSSSQLKLPNKKSSSVKPVVDPAAAKLWTLSANDMEDDSVDLIDSDELLDPEDLKRPDPASLKAPSCGEGKKRKACKNCTCGLAEELEREQSKAQSSQPKSACGNCYLGDAFRCANCPYLGMPAFKPGEQVLLSNSNLQDA", "sequence_length": 309, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "31b2748d4ca6190769f49d3512b288ce2468c08e35c8d1e2639bd3bcea67ccd7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WTY4.json", "taxon_id": "10090", "uniprot_accession": "Q8WTY4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anamorsin-c-terminal-ipr046408.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046408", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/anamorsin-c-terminal-ipr046408.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anamorsin-n-terminal-domain-metazoan-type-ipr049011.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049011", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/anamorsin-n-terminal-domain-metazoan-type-ipr049011.yaml" } ], "pfam_ids": [ "PF05093", "PF20922" ], "protein_name": "Anamorsin homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENFKGLQKSLYIWTDSADLDKRVEQLKAATGGDVALENVHRLSFSSYANSSFDLIVIECAQLTDSYVKLLHMLKPSGKLHLVSYIGPAASLLQEIKLSGFINCREDSPDALTAEKPGYETGSSARLSFAKKNASAVNVWKISGDDEELIDEEELLDEEDKQKPDPAGLRVCSTTGKRKACKNCSCGLAEELETEKQSQKATENAKSSCGNCYLGDAFRCSTCPYLGMPAFKPGEKVQLADNLLKSDI", "sequence_length": 248, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "05a54e131ab2669001dc0f690219b605994ede2fcedf95d14e11793a35a9c0b2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9V3Y2.json", "taxon_id": "7227", "uniprot_accession": "Q9V3Y2", "uniprot_release": "2026_03" } ], "pfam_id": "PF05093", "short_name": "CIAPIN1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05095", "short_name": "DUF687", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf688-pf05097.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05097", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf688-pf05097.yaml" } ], "pfam_ids": [ "PF05097" ], "protein_name": "Uncharacterized protein At4g00950", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAEKETEQEGNLTVMKLPVLPTKPNTHSHSMSSPIHSSISASVPFSWEEEPGKPKQHSTSSSSSSSSSPLTSYSSSPFETHKSLELPPRLHLLEKDGGSVTKLHSPITVFDGPYSMTTSKRMDSPSFRMMVKGSADCYGSFRSDIDGDLEDLEVGSKQQENLSSGSLAVVKKRGRLGFFGFRRRRALKGKTEFGRGSYVFPSSVDRESEYSRKEEEEEKEDKRFGYDDTDGISCSQSSRFCDVKISSISRTGSFSTLPAPPSSSSKSHFWTNVYAGLKQVVPWKSKKTTV", "sequence_length": 291, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6235dc7a6d2c186f26dc93492fa37b21261fbd23cc0106a755cc4d31b3aeeb07", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M160.json", "taxon_id": "3702", "uniprot_accession": "Q9M160", "uniprot_release": "2026_03" } ], "pfam_id": "PF05097", "short_name": "DUF688", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cas-cas7-pf05107.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05107", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cas-cas7-pf05107.yaml" } ], "pfam_ids": [ "PF05107" ], "protein_name": "CRISPR-associated protein Cas7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTLNRSELLFVYDAQDCNPNGNPIGDNRPRRDPDTGQGIITDVRLKRYLRDQLQDDGFDIYVKKTEGRSHTRTKLIKDVLGGVDDADDLEDLGDVAEAFLDAATDVRYFGSTLSFEASDKDEDEAFRDALNSSLPNNYQGPVQFLPSKSLNEVEENEEYDSLTSVISTGEGNRQGGFDLDDKRIKYGIFPFWGLVDNNGAESTNLSQADVERLDTLCWRALKNQTTSRSKLGQEPRLYVRVEYEEGNYHVGGLQNLLELGDDSSESLRSVKDVVVDVTELVETLERVADRIDTLHVVGDGRLELDIGDETIRADEFWSHLSEAGHDVHEIDVLNERDLA", "sequence_length": 340, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fee3684a86ff53dcb8760494b8147d976faa9e1c998bb5b4bfc412ee38798786", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D4GQN6.json", "taxon_id": "309800", "uniprot_accession": "D4GQN6", "uniprot_release": "2026_03" } ], "pfam_id": "PF05107", "short_name": "Cas_Cas7", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)", "origins": [ { "cited_uniprot_accession": "A0QQ39", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/secretion_system/esx_3_type_vii_secretion_system_membrane_complex.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "cellstructuremech:esx_3_type_vii_secretion_system_membrane_complex", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/secretion_system/esx_3_type_vii_secretion_system_membrane_complex.yaml" } ], "pfam_ids": [ "PF05108" ], "protein_name": "ESX-3 secretion system ATPase EccB3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGPVNPDDRRSFSSRTPVNENPDGVQYRRGFVTRHQVSGWRFVMRRIASGVALHDTRMLVDPLRTQSRAVLTGALILVTGLVGCFIFSLFRPGGVPGNNAILADRSTSALYVRVGEQLHPVLNLTSARLISGSPDNPTMVKTSEIDKFPRGNLLGIPGAPERMVQNAATDAEWTVCDAVGGANPGVTVIAGPLGADGERAAPLPPDHAVLVHSDAEPNPGDWLLWDGKRSPIDLADRAVTDALGLGGQALAPRPIAAGLFNAVPAAPALTAPVIPDAGAAPQFELSLPVPVGAVVVAYDADNTARYYAVLSDGLQPISPVLAAILRNTDSHGFAQPPRLGPDEVARTPMSRGLDTSAYPDNPVTLVEASAHPVTCAHWTKPSDAAESSLSVLSGAVLPLAEGLHTVDLVGAGAGGAANRVALTPGTGYFVQTVGAEPGSPTAGSMFWVSDTGVRYGIDTAEDDKVVAALGLSTSPLPVPWSVLSQFAAGPALSRGDALVAHDAVSTNPNSARMEASR", "sequence_length": 518, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99734711a4171368f88f6dcce5c4b7bda358229a5870aacfb015d2ebe3c8ece1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0QQ39.json", "taxon_id": "246196", "uniprot_accession": "A0QQ39", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "P9WNQ9", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/secretion_system/esx_5_type_vii_secretion_system_membrane_complex.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "cellstructuremech:esx_5_type_vii_secretion_system_membrane_complex", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/secretion_system/esx_5_type_vii_secretion_system_membrane_complex.yaml" } ], "pfam_ids": [ "PF05108" ], "protein_name": "ESX-5 secretion system ATPase EccB5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEESRGQRGSGYGLGLSTRTQVTGYQFLARRTAMALTRWRVRMEIEPGRRQTLAVVASVSAALVICLGALLWSFISPSGQLNESPIIADRDSGALYVRVGDRLYPALNLASARLITGRPDNPHLVRSSQIATMPRGPLVGIPGAPSSFSPKSPPASSWLVCDTVATSSSIGSLQGVTVTVIDGTPDLTGHRQILSGSDAVVLRYGGDAWVIREGRRSRIEPTNRAVLLPLGLTPEQVSQARPMSRALFDALPVGPELLVPEVPNAGGPATFPGAPGPIGTVIVTPQISGPQQYSLVLGDGVQTLPPLVAQILQNAGSAGNTKPLTVEPSTLAKMPVVNRLDLSAYPDNPLEVVDIREHPSTCWWWERTAGENRARVRVVSGPTIPVAATEMNKVVSLVKADTSGRQADQVYFGPDHANFVAVTGNNPGAQTSESLWWVTDAGARFGVEDSKEARDALGLTLTPSLAPWVALRLLPQGPTLSRADALVEHDTLPMDMTPAELVVPK", "sequence_length": 506, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a4a975d6b4a1304a7361385f0589d0e3a9ae6288e34f59380b7107673bec70c8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WNQ9.json", "taxon_id": "83332", "uniprot_accession": "P9WNQ9", "uniprot_release": "2026_03" } ], "pfam_id": "PF05108", "short_name": "T7SS_ESX1_EccB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05113", "short_name": "DUF693", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05114", "short_name": "MbnB_TglH_ChrH", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf695-pf05117.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05117", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf695-pf05117.yaml" } ], "pfam_ids": [ "PF05117", "PF06877" ], "protein_name": "Uncharacterized protein HI_0040", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDMANWQNYRSTVNGMPAVFTANIEDVEKYHGKGLDKIVQFTIDYQADDETGLPSEVEYDKLINRVFKILTQLTALPNVFFAGHFICNSQIKIHFYCKHENLIVETLQQIDFVKDINVQKDLIWDTYFDFLLASPLEIKLNATEELLDLLKSKGRNLSDTYLVEHSFHFDEEQKMFPFMDELSLGDYSFTTLQYSAQAIQFNEDDEPYFLVKLEQEISLENSEIFEQVERFEKLAEQFSGEYIGWECDSLLDSNKPLN", "sequence_length": 258, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ffd9f2a2b4d08b3f780c97abe1a66f1cf71615ccfe7d54f90719b42f235a1b19", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P43929.json", "taxon_id": "71421", "uniprot_accession": "P43929", "uniprot_release": "2026_03" } ], "pfam_id": "PF05117", "short_name": "DUF695", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/18s-rrna-cytidine-n-acetyltransferase-activity-go1990883.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/18s-rrna-cytidine-n-acetyltransferase-activity-go1990883.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"A5VQH6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sinorhizobium medicae (strain WSM419)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf697-pf05128.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05128", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf697-pf05128.yaml" } ], "pfam_ids": [ "PF05128" ], "protein_name": "UPF0283 membrane protein Smed_1530", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf697-pf05128.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05128", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf697-pf05128.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0A8R7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } 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"canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ribosomal-rna-processing-protein-8-n-terminal-domain-1-10-10-2150.yaml" } ], "pfam_ids": [ "PF05148" ], "protein_name": "Ribosomal RNA-processing protein 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFEEPEWVEAAPAIVGLGAATAQVRPATAPPVKGRKRRHLLATLRALEAASLSQQTPSLPGSDSEEEEEVGRKKRHLQRPSLASVSKEVGKKRKGKCQKQAPSISDSEGKEIRRKCHRQAPPLGGVSAGEEKGKRKCQEYSSLHLTQPLDSVDQTVHNSRTSTATIDPSKPSPESMSPNSSHTLSRKQWRNRQKNKRRHKNKFRPLQTPEQAPPKASIEETEVPPVPKSDSQESRAGALRARMTQRLDGARFRYLNEQLYSGPSSAARRLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIAKDLRQKPASLVVADFGCGDCRLASSVRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKTGGLLKVAEVSSRFEDIRTFLGAVTKLGFKIIYKDLTNSHFFLFDFEKTGPPRVGPKAQLSGLKLQPCLYKRR", "sequence_length": 457, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e686ae1f6e61d4878b9c3652810a7049a4066d0f7ae38039b07917c5fae5c141", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DB85.json", "taxon_id": "10090", "uniprot_accession": "Q9DB85", "uniprot_release": "2026_03" } ], "pfam_id": "PF05148", "short_name": "Methyltransf_8", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf705-pf05152.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05152", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf705-pf05152.yaml" } ], "pfam_ids": [ "PF05152" ], "protein_name": "Uncharacterized 36.0 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKCKWACLRLRDAFYKGHVLVLAEYADLKYLGFQKYEYFEYVLLQLNGSAQFCGAMATNPRYCLQVFSAADDMCSVRHHVKTAFKTPVLGHVCVLQHKPAMYACLKEWYTLFEFQVPLLRSQSLVWEFPHVVVFDLDSTLITEQEDVQIRDPQIYDDLSELRDLGCVLVLWSYGSRDHVAHSLRAVQLTPYFDAIISEGSVAEDAPAATTETTDLQMQSRYVSSNFSFDMHAESGAELPKSPKVVIKILADKGVNYFKSITLVDDLPSNNFAYDYYVRVKRCPVPLRDWRRYQDEILDNLAEYDSLYVSNKTI", "sequence_length": 313, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "66570159f5b16acffe1519d2689960ff613f0b40310c06401826540ebe5be29f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10343.json", "taxon_id": "262177", "uniprot_accession": "O10343", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf705-pf05152.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05152", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf705-pf05152.yaml" } ], "pfam_ids": [ "PF05152" ], "protein_name": "Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASSLQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPQLCKIIENNYNYCMQIFKAPADDMRDIRHNIKRAFKTPVLGHMCVLSNKPPMYSFLKEWFLLPHYKVVSLKSESLTWGFPHVVVFDLDSTLITEEEQVEIRDPFVYDSLQELHEMGCVLVLWSYGSRDHVAHSMRDVDLEGYFDIIISEGSTVQEERSDLVQNSHNAIVDYNLKKRFIENKFVFDIHNHRSDNNIPKSPKIVIKYLSDKNVNFFKSITLVDDLPTNNYAYDFYVKVKRCPTPVQDWEHYHNEIIQNIMDYEQYFIK", "sequence_length": 320, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aecbd5d68479bdd5a557c7a5139461ccdb6bbcbb0ffa528ae937fecc60819844", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P24745.json", "taxon_id": "46015", "uniprot_accession": "P24745", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cryptophlebia leucotreta granulosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf705-pf05152.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05152", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf705-pf05152.yaml" } ], "pfam_ids": [ "PF05152" ], "protein_name": "Uncharacterized 41.0 kDa protein in P143-LEF5 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGVMKVKSSVFNILRIVRYKVINETVVIVFLSKFTKHIKQMNHRWTVLRNSWSLTKRHILFVTKYSDLKDIQKELLNSVEFVVFIGDFTKSIFFSDYKMDNIVCKDEMQDFRQHFKTKYKLSYMGHIFVIPHKQPTYDLLTEWLVCNIYSLQEITNINTIYFEPPHVVVFDMDSTLITDEDQVRIRDPAIYEALDALKKYNCVLCLWSYGDKEHVVNSLNKVKLDGYFKIILSGGRKAGEYQLNEEEDRYYNVYYESTPFYLNMTDVKNIPKSPRVVLWYLINHNIVLFKTLTLVDDLFDNNIYYDNFVNLSTCPVPVNDWDKWHTQIVRFIVNYDKKFKNY", "sequence_length": 343, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c0c51115972d66f059f4d5bda0a2d4f4ea31635220517a6425f9fae890fc71d8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41729.json", "taxon_id": "35254", "uniprot_accession": "P41729", "uniprot_release": "2026_03" } ], "pfam_id": "PF05152", "short_name": "DUF705", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/inositol-oxygenase-activity-go0050113.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050113", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/inositol-oxygenase-activity-go0050113.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/miox-pf05153.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05153", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/miox-pf05153.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O82200", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05153" ], "protein_name": "Inositol oxygenase 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "2ff94c4b81005d6f63d9e807482774e061254510dd1bffb6e9253b0707f2a2c9", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTILVEHFVPDSRVDEKKVIEERDNELVLDGGFVVPKSKETDAFDAPDMNFLGHSFRDYENGESERQQGVEEFYRMQHIHQTYDFVKKMRKEYGKLNKMEMSIWECCELLNNVVDESDPDLDEPQIQHLLQTAEAIRRDYPDEDWLHLTALIHDLGKVLLLPEFGGLPQWAVVGDTFPVGCTFDSANIHHKYFKGNHDINNPKYNTKNGVYTEGCGLDNVLMSWGHDDYMYLVAKKNGTTLPHAGLFIIRYHSFYPLHKAGAYTHLMNDEDRDDLKWLHVFNKYDLYSKSKVLVDVEQVKPYYISLINKYFPAKLKW", "sequence_length": 317, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2ff94c4b81005d6f63d9e807482774e061254510dd1bffb6e9253b0707f2a2c9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O82200.json", "taxon_id": "3702", "uniprot_accession": "O82200", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/inositol-oxygenase-activity-go0050113.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050113", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/inositol-oxygenase-activity-go0050113.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/miox-pf05153.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05153", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/miox-pf05153.yaml" } ], "pfam_ids": [ "PF05153" ], "protein_name": "Inositol oxygenase 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTISVEKPIFEEVSAFEKSGDNIGELKLDGGFSMPKMDTNDDEAFLAPEMNAFGRQFRDYDVESERQKGVEEFYRLQHINQTVDFVKKMRAEYGKLDKMVMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKVITLPQFGGLPQWAVVGDTFPVGCAFDESNVHHKYFVENPDFHNETYNTKNGIYSEGCGLNNVMMSWGHDDYMYLVAKENGSTLPSAGQFIIRYHSFYPLHTAGEYTHLMNEEDKENLKWLHVFNKYDLYSKSKVHVDVEKVKPYYMSLIKKYFPENLRW", "sequence_length": 317, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4b2e0144d90d2adadc26ac805f8e680c0b5b12af6a8dd44fd36965853e442406", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8H1S0.json", "taxon_id": "3702", "uniprot_accession": "Q8H1S0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/inositol-oxygenase-activity-go0050113.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050113", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/inositol-oxygenase-activity-go0050113.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/miox-pf05153.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05153", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/miox-pf05153.yaml" } ], "pfam_ids": [ "PF05153" ], "protein_name": "Inositol oxygenase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTILIDRHSDQNDAGDEIVEKNQGNGKEEETELVLDAGFEAPHTNSFGRTFRDYDAESERRRGVEEFYRVNHIGQTVDFVRKMREEYEKLNRTEMSIWECCELLNEFIDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLLHSSFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYDNPSYNSKYGIYTEGCGLDNVLMSWGHDDYMYLVAKENQTTLPSAGLFIIRYHSFYALHKSEAYKHLMNNEDRENMKWLKVFNKYDLYSKSKVRVNVEEVKPYYLSLTNKYFPSKLKW", "sequence_length": 311, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7d3065cefdf8b88f627048999910024dc3334ea6a9a742b6f5cc93224d795039", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8L799.json", "taxon_id": "3702", "uniprot_accession": "Q8L799", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/inositol-oxygenase-activity-go0050113.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050113", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/inositol-oxygenase-activity-go0050113.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/miox-pf05153.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05153", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/miox-pf05153.yaml" } ], "pfam_ids": [ "PF05153" ], "protein_name": "Inositol oxygenase 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNISVENPVFVHEDSTTQKTGELRLDSDIPMSKISSDDEVFLAPEMNAFGRQFRDYTDTNSERQKSVEHFYATQHTNQTLDFVQKMRSEYGKLDKMVMNIWECCELSKEVVDESDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKVLTLPQFGGLPQWAVVGDTFPVGCAFDESNVHHKYFMENPDFNNPKYNTKAGIYSEGCGLENVLMSWGHDDYMYLVAKENGSTLPSPGLFIIRYHSFYPLHKAGAYTHLMNEEDKENLKWLHVFNKYDLYSKSKVHVNVEKVKPYYMSLIKKYFPENLRW", "sequence_length": 314, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "541d391beccc16b8982aa688483e9e603053b04024cf275298e3d3a39fd0d4ab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FJU4.json", "taxon_id": "3702", "uniprot_accession": "Q9FJU4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"CATH:3.10.510.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ycgl-domain-3-10-510-20.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AB43", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05166" ], "protein_name": "Protein YcgL", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "33e34809a6f7d757c56f2df17a835580aa4a1892005008cf87922bb8ddf119dd", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPKPGILKSKSMFCVIYRSSKRDQTYLYVEKKDDFSRVPEELMKGFGQPQLAMILPLDGRKKLVNADIEKVKQALTEQGYYLQLPPPPEDLLKQHLSVMGQKTDDTNK", "sequence_length": 108, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "33e34809a6f7d757c56f2df17a835580aa4a1892005008cf87922bb8ddf119dd", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P0AB43.json", "taxon_id": "83333", "uniprot_accession": "P0AB43", "uniprot_release": "2026_03" } ], "pfam_id": "PF05166", "short_name": "YcgL", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf711-pf05167.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05167", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf711-pf05167.yaml" } ], "pfam_ids": [ "PF05167" ], "protein_name": "UPF0210 protein Sfum_2948", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSDREVLSTLEMLKNEHLDVRTVTLGVSLFDCAGHDPEKFKENVQRKIFRLAGNLVKVCDEIGIRYGIPVVNKRVAVSPIAVAACSFSRPQMVEVARKLDETAADIGIDFIGGFGALVEKGFTEGDRALIAAIPEALASTRRVCSSVNVASTRAGINMDAVYLMGKTIKDAAELTREADGIACAKLCVFANIPEDVPFMAGAYLGVGEPDSVINVGVSGPGVVKKAIDRARAANPHLDLGALSDIIKRTSFKVTRVGELIGRQVAEKLGVPFGVVDLSLAPTPNVGDSVGEIFQSLGLQSIGVPGTTAALALLNDAVKKGGAFASSYVGGLSGAFIPVSEDLNIAAAASRGYLSMEKLEAMTSVCSVGLDMVALAGDTSAETLAGIIADEMAIGVINKKTTAARLIPVPGKKAGEKASFGGLLGEAVIIAVSSNFGSREFISLGGRIPAPIHSLIN", "sequence_length": 457, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3f5c00dbd3372982971179accff06f8e14908ccef00d24c6c45b323615833d17", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0LMH0.json", "taxon_id": "335543", "uniprot_accession": "A0LMH0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrobaculum islandicum (strain DSM 4184 / JCM 9189 / GEO3)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf711-pf05167.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05167", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf711-pf05167.yaml" } ], "pfam_ids": [ "PF05167" ], "protein_name": "UPF0210 protein Pisl_0759", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRFDPSEIGEVLEMLLFRELDIRAVTLSVNTLPAIRPTVGDTLAALEETLEPLLKRLRPAVERVASRLGVKIVTVRLAVSPISIMLEPIGKAEAAVEIAKHLDGLAEKHGVDMVGGFSAFVHAGVSRGDAALMEALPEALNSTRRLAGFLNVASTATGVNMDAVRAAAEAVLKMEPHAAARFAATANMPEDVPFMPGAYHGLGLPDAVVNIAVSGPGVIEAVVRNMPNADVRTLHDAIKRAAFKITRLGELVGREVAKELGVPFGSVDLSVAPSPKVGDSVAAILEAVGLPRVGAPGTLFALALFVDAVKKGGAMATSTIGGLSGAFIPVSEDVVMAEAAREGALTFDTLKSTLAVCNTGIDMAGIPGDAPPDAVAALIADVMAVAVALDKALGVRLVPIPGAKPGDVYDLGGLYGRVVVMDLGKYRDIPLARRKGTAPPAVERLKKG", "sequence_length": 448, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79f110ca24097251c3271eed37d0b676908f6239883bd82fe87dc22f77323291", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1RSK3.json", "taxon_id": "384616", "uniprot_accession": "A1RSK3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf003700.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF003700", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf003700.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uncharacterized-proteins-with-similarity-to-ribonucleotide-reductase-a-cd08025.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd08025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uncharacterized-proteins-with-similarity-to-ribonucleotide-reductase-a-cd08025.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q59059", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05167" ], "protein_name": "UPF0210 protein MJ1665", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "68f362f05787dfb0d71c6a4d69508d707dbb0498f29c8bbe898c4ca7bf5ccf47", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MFRPEEIIETIKMIKMENLDLRTVTLGLSLRDCVSKDLDELKENIYNKITSSAENLVETAERISEKYGIPIVNKRIAVTPISLVIGGAIKDLDKEEQIKACVEVGEVLDKAAKKVRVDFLGGYSALVHKDATKEDRALIDSIPFMMEKTERVCSSVNVASTKTGINMDAVKRMGEIIKETAFRTEKAIGCAKLVVFANAPEDNPFMAGAFHGVGEGDKVINVGVSGPGVVRAVIEKLPDADFGTLANEIKKVAFKITRVGELIGREVSKELGVKFGVVDLSLAPTPARGDSIANILEAMGLEKCGTHGSTAALALLNDAVKKGGAMATSYVGGLSGAFIPVSEDSGMVEAVEAGALTLEKLEAMTCVCSVGIDMVAIPGDTPASTISAIIADEMAIGVINNKTTAVRIIPVPGKKAGEYVDYGGLLGKAPIMEVNKYSSEKFIKRGGRIPAPLQALTN", "sequence_length": 458, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "68f362f05787dfb0d71c6a4d69508d707dbb0498f29c8bbe898c4ca7bf5ccf47", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q59059.json", "taxon_id": "243232", "uniprot_accession": "Q59059", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf711-pf05167.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05167", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf711-pf05167.yaml" } ], "pfam_ids": [ "PF05167" ], "protein_name": "UPF0210 protein SP_0239", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDIRQVTETIAMIEEQNFDIRTITMGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINMTAVADMGRIIKETANLSDMGVAKLVVFANAVEDNPFMAGAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQMASERLGVEFGIVDLSLAPTPAVGDSVARVLEEMGLETVGTHGTTAALALLNDQVKKGGVMACNQVGGLSGAFIPVSEDEGMIAAVQNGSLNLEKLEAMTAICSVGLDMIAIPEDTPAETIAAMIADEAAIGVINMKTTAVRIIPKGKEGDMIEFGGLLGTAPVMKVNGASSVDFISRGGQIPAPIHSFKN", "sequence_length": 445, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a05c5f8046dbc03d95df52fb456bbbc3c0dc93c3d4fbefc1c904f92b496592c8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q97ST4.json", "taxon_id": "170187", "uniprot_accession": "Q97ST4", "uniprot_release": "2026_03" } ], "pfam_id": "PF05167", "short_name": "DUF711", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hepn-pf05168.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hepn-pf05168.yaml" } ], "pfam_ids": [ "PF05168" ], "protein_name": "UPF0332 protein PH1297", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVPEEVEKHIKITEEELSSAYLLLENGKLRDSISRAYYSMFHAAKALLLLKGIDPRKHSGVIRMFGLHFVNSGFIERVYAKYLTHSRSDQRLTMMSITNQVMRKLKTLLKVLSASWRELKVFWRRLKMDKKAQALNEFLKL", "sequence_length": 142, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1efee25951da0ff6f3b4541b3598fd2157bb1492bf1237633a4d2d4df3aa359c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O59008.json", "taxon_id": "70601", "uniprot_accession": "O59008", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hepn-domain-ipr007842.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hepn-domain-ipr007842.yaml" } ], "pfam_ids": [ "PF05168" ], "protein_name": "Putative toxin MJ0142", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRLKIMELRYKRELEKLIEKAEKSLEASENLYNSEFYDFAVSRIYYSMFYCVKALLLTKEINPKKHSGVLKMFAKEFIKTNELDVELFEYINEAYNYRQTADYDATIEIKKEEAEYLLHKGHIFLNKTKKYLISKNILKGENDNTKS", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c8c444a0f0f532974b12ac8054b9bbfa7c581355527c01276759ad119025de38", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q57607.json", "taxon_id": "243232", "uniprot_accession": "Q57607", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hepn-domain-ipr007842.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hepn-domain-ipr007842.yaml" } ], "pfam_ids": [ "PF05168" ], "protein_name": "Putative toxin MJ0605", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKALLNKDIREEIQALIEIAEENLSAAKILFENKLYRDAVARAYYAIFHSAKALLLTKNLNPKKHAGVIKMFGLYFVNEGYIEEIYGRIITKSYNLRWKADYTTDKPTEEEAESIIYEAEMFVDRIKKALKEIL", "sequence_length": 134, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2479f770fec981d2f1434a83bdd99f24b232683c5430a9a250a39080724d0916", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58022.json", "taxon_id": "243232", "uniprot_accession": "Q58022", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hepn-domain-ipr007842.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hepn-domain-ipr007842.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/hepn.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50910", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/hepn.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q58700", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05168" ], "protein_name": "Putative toxin MJ1304", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "146a8b4061a26752cbbc718a29fcd28cb66cce6d97655ef4ca84c0d74c7caff4", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEDSGFNIKYAKLFIKRAEEDLEVAKVLLKTNHYPDSVYHSQQCVEKAVKAVLILNGIIFRRHVVSGVFRNVIYEMKIEDSWKEKLLNLIPKIESLEEHWVMPRYPEPYFGELWNPLEEYTKEDAEECLKDAENVLEVIKDFLKEKYGLKQI", "sequence_length": 152, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "146a8b4061a26752cbbc718a29fcd28cb66cce6d97655ef4ca84c0d74c7caff4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58700.json", "taxon_id": "243232", "uniprot_accession": "Q58700", "uniprot_release": "2026_03" }, { "evidence_scope": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sacsin-nov-domain-ipr058210.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/sacsin-n-terminal-atp-binding-like-domain-containing-protein-nf047352.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF047352", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/sacsin-n-terminal-atp-binding-like-domain-containing-protein-nf047352.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hepn-pf05168.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hepn-pf05168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sacs-pf25794.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25794", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sacs-pf25794.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/hepn.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50910", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/hepn.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9JLC8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05168", "PF25794" ], "protein_name": "Sacsin", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "86cb12d201b543822be3b269598f2019a67d38879680918c09e03523c1e7632a", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "METKFQRWVRVTVLRGCVGCRTVAVPATATGRDLKERIFAETSFPVAEQRLWRGDREVPDWIKIGDLTSKTCHLFVNLQSKGLKGGGRFGQTTPPLVDFLKDILRRYPEGGQILKELIQNAEDAGATEVKFLYDETQYGTETLWSKDMAQYQGSALYVYNNAVFTPEDWHGIQEIARSRKKDDPLKVGRFGIGFNSVYHITDVPCIFSGDQIGMLDPHQTLFGPHESGQCWNLKDDIKEINELPDQFAPFIGVFGSTKETFTNGSFPGTFFRFPLRLQPSQLSSNLYTKQKVLELFDSFRADADTVLLFLKSVQAVSLHVREADGTEKLVFRVTASENKALKHERPNSIKILGTAISNYCKKIPSNSVTCVTYHINIVLEDESTKDAQKTSWLVCNSVGGRGISSKLDSLADELKFVPIIGLAMPLSGKDEENGAISDFSGKAFCFLPLPPGEESRTGLPVHISGFFGLTDNRRSIKWRELDQWRDPAALWNEYLIVNVVPKTYATLILDSIKRLETEKSSDFPLSVDTIYKLWPEASKVKAHWHPVLGPLFSELFQHAVIYSIGGEWVKLEQVHFSELDGSLESTRSVLNYLQSSGKQIAKVPGNLAAAVQLSAASATSSASPVRKVTPAWVRQVLRKCAHLGSAEEKLHLLEFVLSDQAYSELLGLELLPLQSGAFVPFSSSVSDQDVVYITSEEFPRSLFPGLEARLILENLKPHLLAALKEAAQTRGRPCTQLQLLNPERFARLIKEVMNTFWPGRELVVQWYPFSEDKRHPSLSWLKMVWKNLYIHFSEDLTLFDEMPLIPRTLLNEDQTCVELIRLRIPSVVILDDETEAQLPEFLADIVQKLGGIVLKRLDTSIQHPLVKKYIHSPLPSAILQIMEKIPLQKLCNQIASLLPTHKDALRKFLASLTDTSEKEKRIIQELTIFKRINHSSDQGISSYTKLKGCKVLDHTAKLPTDLRLSVSVIDSSDEATIRLANMLKIEKLKTTSCLKFVLKDIGNAFYTQEEVTQLMLWILENLSSLKNENSNVLDWLMPLKFIHMSQGHVVAAGDLFDPDIEVLRDLFYNEEEACFPPTIFTSPDILHSLRQIGLKNESSLKEKDVVQVARKIEALQVSSCQNQDVLMKKAKTLLLVLNKNQTLLQSSEGKMALKKIKWVPACKERPPNYPGSLVWKGDLCNLCAPPDMCDAAHAVLVGSSLPLVESVHVNLEQALSIFTKPTINAVLKHFKTVVDWYTSKTFSDEDYYQFQHILLEIYGFMHDHLSEGKDSFKALKFPWVWTGKNFCPLAQAVIKPTHDLDLQPYLYNVPKTMAKFHQLFKACGSIEELTSDHISMVIQKVYLKSDQELSEEESKQNLHLMLNIMRWLYSNQIPASPNTPVPIYHSRNPSKLVMKPIHECCYCDIKVDDLNDLLEDSVEPIILVHEDIPMKTAEWLKVPCLSTRLINPENMGFEQSGQREPLTVRIKNILEEYPSVSDIFKELLQNADDANATECSFMIDMRRNMDIRENLLDPGMAACHGPALWSFNNSEFSDSDFLNITRLGESLKRGEVDKVGKFGLGFNSVYHITDIPIIMSREFMIMFDPNINHISKHIKDRSNPGIKINWSKQQKRLRKFPNQFKPFIDVFGCQLPLAVEAPYSYNGTLFRLSFRTQQEAKVSEVSSTCYNTADIYSLVDEFSLCGHRLIIFTQSVNSMYLKYLKIEETNPSLAQDTIIIKKKVCPSKALNAPVLSVLKEAAKLMKTCSSSNKKLPTDVPKSSCILQITVEEFHHVFRRIADLQSPLFRGPDDDPATLFEMAKSGQSKKPSDELPQKTVDCTTWLICTCMDTGEALKFSLNESGRRLGLVPCGAVGVLLHETQEQKWTVKPHIGEVFCYLPLRIKTGLPIHINGCFAVTSNRKEIWKTDTKGRWNTTFMRHVIVKAYLQALSVLRDLAIGGELTDYTYYAVWPDPDLVHDDFSVICKGFYEDIAHGKGKELTRVFSDGSMWVSMKNVRFLDDSILQRKDVGSAAFKIFLKYLKKTGSKNLCAVELPSSVKAGFEEAGCKQILLENTFSEKQFFSEVFFPNIQEIEAELRDPLMNFVLNEKLDEFSGILRVTPCVPCSLEGHPLVLPSRLIHPEGRVAKLFDTKDGRFPYGSTQDYLNPIILIKLVQLGMAKDDILWDDMLERAESVAEINKSDHAAACLRSSILLSLIDEKLKIKDPRAKDFAAKYQTIPFLPFLTKPAGFSLEWKGNSFKPETMFAATDIYTAEYQDIVCLLQPILNENSHSFRGCGSVSLAVKEFLGLLKKPTVDLVINQLKQVAKSVDDGITLYQENITNACYKYLHEAVLQNEMAKATIIEKLKPFCFILVENVYVESEKVSFHLNFEAAPYLYQLPNKYKNNFRELFESVGVRQSFTVEDFALVLESIDQERGKKQITEENFQLCRRIISEGIWSLIREKRQEFCEKNYGKILLPDTNLLLLPAKSLCYNDCPWIKVKDSTVKYCHADIPREVAVKLGAIPKRHKALERYASNICFTALGTEFGQKEKLTSRIKSILNAYPSEKEMLKELLQNADDAKATEICFVFDPRQHPVDRIFDDKWAPLQGPALCVYNNQPFTEDDVRGIQNLGKGTKEGNPCKTGHYGIGFNSVYHITDCPSFISGNDILGIFDPHARYAPGATSVSPGRMFRDLDADFRTQFSDVLDLYLGNHFKLDNCTMFRFPLRNAEMAQVSEISSVPSSDRMVQNLLDKLRSDGAELLMFLNHMEKISICEIDKATGGLNVLYSVKGKITDGDRLKRKQFHASVIDSVTKKRQLKDIPVQQITYTMDTEDSEGNLTTWLICNRSGFSSMEKVSKSVISAHKNQDITLFPRGGVAACITHNYKKPHRAFCFLPLSLETGLPFHVNGHFALDSARRNLWRDDNGVGVRSDWNNSLMTALIAPAYVELLIQLKKRYFPGSDPTLSVLQNTPIHVVKDTLKKFLSFFPVNRLDLQPDLYCLVKALYSCIHEDMKRLLPVVRAPNIDGSDLHSAVIITWINMSTSNKTRPFFDNLLQDELQHLKNADYNITTRKTVAENVYRLKHLLLEIGFNLVYNCDETANLYHCLVDADIPVSYVTPADVRSFLMTFSSPDTNCHIGKLPCRLQQTNLKLFHSLKLLVDYCFKDAEESEFEVEGLPLLITLDSVLQIFDGKRPKFLTTYHELIPSRKDLFMNTLYLKYSSVLLNCKVAKVFDISSFADLLSSVLPREYKTKNCAKWKDNFASESWLKNAWHFISESVSVTDDQEEPKPAFDVIVDILKDWALLPGTKFTVSTSQLVVPEGDVLIPLSLMHIAVFPNAQSDKVFHALMKAGCIQLALNKICSKDSALVPLLSCHTANIDSPASILKAVHYMVQTSTFRTEKLMENDFEALLMYFNCNLSHLMSQDDIKILKSLPCYKSISGRYMSIAKFGTCYVLTKSIPSAEVEKWTQSSSSAFLEEKVHLKELYEVLGCVPVDDLEVYLKHLLPKIENLSYDAKLEHLIYLKNRLASIEEPSEIKEQLFEKLESLLIIHDANNRLKQAKHFYDRTVRVFEVMLPEKLFIPKEFFKKLEQVIKPKNQAAFMTSWVEFLRNIGLKYALSQQQLLQFAKEISVRANTENWSKETLQSTVDILLHHIFQERMDLLSGNFLKELSLIPFLCPERAPAEYIRFHPQYQEVNGTLPLIKFNGAQVNPKFKQCDVLQLLWTSCPILPEKATPLSIKEQEGSDLAPQEQLEQVLNMLNVNLDPPLDKVINNCRNICNITTLDEEMVKTRAKVLRSIYEFLSAEKREFRFQLRGVAFVMVEDGWKLLKPEEVVINLEYEADFKPYLYKLPLELGTFHQLFKHLGTEDIISTKQYVEVLSRIFKSSEGKQLDPNEMRTVKRVVSGLFKSLQNDSVKVRSDLENARDLALYLPSQDGKLVKSSILVFDDAPHYKSRIQGNIGVQMLVDLSQCYLGKDHGFHTKLIMLFPQKLRPRLLSSILEEQLDEETPKVCQFGALCSLQGRLQLLLSSEQFITGLIRIMKHENDNAFLANEEKAIRLCKALREGLKVSCFEKLQTTLRVKGFNPIPHSRSETFAFLKRFGNAVILLYIQHSDSKDINFLLALAMTLKSATDNLISDTSYLIAMLGCNDIYRISEKLDSLGVKYDSSEPSKLELPMPGTPIPAEIHYTLLMDPMNVFYPGEYVGYLVDAEGGDIYGSYQPTYTYAIIVQEVEREDADNTSFLGKIYQIDIGYSEYKIVSSLDLYKFSRPDESSQNRDSAPTTPTSPTEFLTPGLRSIPPLFSGKESHKSPSTKHHSPRKLKVNALPEILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQNADRASRRTFSTSASRFQSDKYSFQRFYTSWNQEATSHKSERQQQSKEKCPPSAGQTYSQRFFVPPTFKSVGNPVEARRWLRQARANFSAARNDLHKNANEWVCFKCYLSTKLALIAADYAVRGKSDKDVKPTALAQKIEEYSQQLEGLTNDVHTLEAYGVDSLKTRYPDLLPFPQIPNDRFTSEVAMRVMECTACIIIKLENFIQQKV", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9NZJ4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00240", "PF05168", "PF25794" ], "protein_name": "Sacsin", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "5b976fe4afbf54bd4709d2bf32161b5e9af58de5a57d42ffd1004136e9141045", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "METKENRWVPVTVLPGCVGCRTVAALASWTVRDVKERIFAETGFPVSEQRLWRGGRELSDWIKIGDLTSKNCHLFVNLQSKGLKGGGRFGQTTPPLVDFLKDILRRYPEGGQILKELIQNAEDAGATEVKFLYDETQYGTETLWSKDMAPYQGPALYVYNNAVFTPEDWHGIQEIARSRKKDDPLKVGRFGIGFNSVYHITDVPCIFSGDQIGMLDPHQTLFGPHESGQCWNLKDDSKEISELSDQFAPFVGIFGSTKETFINGNFPGTFFRFPLRLQPSQLSSNLYNKQKVLELFESFRADADTVLLFLKSVQDVSLYVREADGTEKLVFRVTSSESKALKHERPNSIKILGTAISNYCKKTPSNNITCVTYHVNIVLEEESTKDAQKTSWLVCNSVGGRGISSKLDSLADELKFVPIIGIAMPLSSRDDEAKGATSDFSGKAFCFLPLPPGEESSTGLPVHISGFFGLTDNRRSIKWRELDQWRDPAALWNEFLVMNVVPKAYATLILDSIKRLEMEKSSDFPLSVDVIYKLWPEASKVKVHWQPVLEPLFSELLQNAVIYSISCDWVRLEQVYFSELDENLEYTKTVLNYLQSSGKQIAKVPGNVDAAVQLTAASGTTPVRKVTPAWVRQVLRKCAHLGCAEEKLHLLEFVLSDQAYSELLGLELLPLQNGNFVPFSSSVSDQDVIYITSAEYPRSLFPSLEGRFILDNLKPHLVAALKEAAQTRGRPCTQLQLLNPERFARLIKEVMNTFWPGRELIVQWYPFDENRNHPSVSWLKMVWKNLYIHFSEDLTLFDEMPLIPRTILEEGQTCVELIRLRIPSLVILDDESEAQLPEFLADIVQKLGGFVLKKLDASIQHPLIKKYIHSPLPSAVLQIMEKMPLQKLCNQITSLLPTHKDALRKFLASLTDSSEKEKRIIQELAIFKRINHSSDQGISSYTKLKGCKVLHHTAKLPADLRLSISVIDSSDEATIRLANMLKIEQLKTTSCLKLVLKDIENAFYSHEEVTQLMLWVLENLSSLKNENPNVLEWLTPLKFIQISQEQMVSAGELFDPDIEVLKDLFCNEEGTYFPPSVFTSPDILHSLRQIGLKNEASLKEKDVVQVAKKIEALQVGACPDQDVLLKKAKTLLLVLNKNHTLLQSSEGKMTLKKIKWVPACKERPPNYPGSLVWKGDLCNLCAPPDMCDVGHAILIGSSLPLVESIHVNLEKALGIFTKPSLSAVLKHFKIVVDWYSSKTFSDEDYYQFQHILLEIYGFMHDHLNEGKDSFRALKFPWVWTGKKFCPLAQAVIKPIHDLDLQPYLHNVPKTMAKFHQLFKVCGSIEELTSDHISMVIQKIYLKSDQDLSEQESKQNLHLMLNIIRWLYSNQIPASPNTPVPIHHSKNPSKLIMKPIHECCYCDIKVDDLNDLLEDSVEPIILVHEDIPMKTAEWLKVPCLSTRLINPENMGFEQSGQREPLTVRIKNILEEYPSVSDIFKELLQNADDANATECSFLIDMRRNMDIRENLLDPGMAACHGPALWSFNNSQFSDSDFVNITRLGESLKRGEVDKVGKFGLGFNSVYHITDIPIIMSREFMIMFDPNINHISKHIKDKSNPGIKINWSKQQKRLRKFPNQFKPFIDVFGCQLPLTVEAPYSYNGTLFRLSFRTQQEAKVSEVSSTCYNTADIYSLVDEFSLCGHRLIIFTQSVKSMYLKYLKIEETNPSLAQDTVIIKKKSCSSKALNTPVLSVLKEAAKLMKTCSSSNKKLPSDEPKSSCILQITVEEFHHVFRRIADLQSPLFRGPDDDPAALFEMAKSGQSKKPSDELSQKTVECTTWLLCTCMDTGEALKFSLSESGRRLGLVPCGAVGVQLSEIQDQKWTVKPHIGEVFCYLPLRIKTGLPVHINGCFAVTSNRKEIWKTDTKGRWNTTFMRHVIVKAYLQVLSVLRDLATSGELMDYTYYAVWPDPDLVHDDFSVICQGFYEDIAHGKGKELTKVFSDGSTWVSMKNVRFLDDSILKRRDVGSAAFKIFLKYLKKTGSKNLCAVELPSSVKLGFEEAGCKQILLENTFSEKQFFSEVFFPNIQEIEAELRDPLMIFVLNEKVDEFSGVLRVTPCIPCSLEGHPLVLPSRLIHPEGRVAKLFDIKDGRFPYGSTQDYLNPIILIKLVQLGMAKDDILWDDMLERAVSVAEINKSDHVAACLRSSILLSLIDEKLKIRDPRAKDFAAKYQTIRFLPFLTKPAGFSLDWKGNSFKPETMFAATDLYTAEHQDIVCLLQPILNENSHSFRGCGSVSLAVKEFLGLLKKPTVDLVINQLKEVAKSVDDGITLYQENITNACYKYLHEALMQNEITKMSIIDKLKPFSFILVENAYVDSEKVSFHLNFEAAPYLYQLPNKYKNNFRELFETVGVRQSCTVEDFALVLESIDQERGTKQITEENFQLCRRIISEGIWSLIREKKQEFCEKNYGKILLPDTNLMLLPAKSLCYNDCPWIKVKDTTVKYCHADIPREVAVKLGAVPKRHKALERYASNVCFTTLGTEFGQKEKLTSRIKSILNAYPSEKEMLKELLQNADDAKATEICFVFDPRQHPVDRIFDDKWAPLQGPALCVYNNQPFTEDDVRGIQNLGKGTKEGNPYKTGQYGIGFNSVYHITDCPSFISGNDILCIFDPHARYAPGATSISPGRMFRDLDADFRTQFSDVLDLYLGTHFKLDNCTMFRFPLRNAEMAKVSEISSVPASDRMVQNLLDKLRSDGAELLMFLNHMEKISICEIDKSTGALNVLYSVKGKITDGDRLKRKQFHASVIDSVTKKRQLKDIPVQQITYTMDTEDSEGNLTTWLICNRSGFSSMEKVSKSVISAHKNQDITLFPRGGVAACITHNYKKPHRAFCFLPLSLETGLPFHVNGHFALDSARRNLWRDDNGVGVRSDWNNSLMTALIAPAYVELLIQLKKRYFPGSDPTLSVLQNTPIHVVKDTLKKFLSFFPVNRLDLQPDLYCLVKALYNCIHEDMKRLLPVVRAPNIDGSDLHSAVIITWINMSTSNKTRPFFDNLLQDELQHLKNADYNITTRKTVAENVYRLKHLLLEIGFNLVYNCDETANLYHCLIDADIPVSYVTPADIRSFLMTFSSPDTNCHIGKLPCRLQQTNLKLFHSLKLLVDYCFKDAEENEIEVEGLPLLITLDSVLQTFDAKRPKFLTTYHELIPSRKDLFMNTLYLKYSNILLNCKVAKVFDISSFADLLSSVLPREYKTKSCTKWKDNFASESWLKNAWHFISESVSVKEDQEETKPTFDIVVDTLKDWALLPGTKFTVSANQLVVPEGDVLLPLSLMHIAVFPNAQSDKVFHALMKAGCIQLALNKICSKDSAFVPLLSCHTANIESPTSILKALHYMVQTSTFRAEKLVENDFEALLMYFNCNLNHLMSQDDIKILKSLPCYKSISGRYVSIGKFGTCYVLTKSIPSAEVEKWTQSSSSAFLEEKIHLKELYEVIGCVPVDDLEVYLKHLLPKIENLSYDAKLEHLIYLKNRLSSAEELSEIKEQLFEKLESLLIIHDANSRLKQAKHFYDRTVRVFEVMLPEKLFIPNDFFKKLEQLIKPKNHVTFMTSWVEFLRNIGLKYILSQQQLLQFAKEISVRANTENWSKETLQNTVDILLHHIFQERMDLLSGNFLKELSLIPFLCPERAPAEFIRFHPQYQEVNGTLPLIKFNGAQVNPKFKQCDVLQLLWTSCPILPEKATPLSIKEQEGSDLGPQEQLEQVLNMLNVNLDPPLDKVINNCRNICNITTLDEEMVKTRAKVLRSIYEFLSAEKREFRFQLRGVAFVMVEDGWKLLKPEEVVINLEYESDFKPYLYKLPLELGTFHQLFKHLGTEDIISTKQYVEVLSRIFKNSEGKQLDPNEMRTVKRVVSGLFRSLQNDSVKVRSDLENVRDLALYLPSQDGRLVKSSILVFDDAPHYKSRIQGNIGVQMLVDLSQCYLGKDHGFHTKLIMLFPQKLRPRLLSSILEEQLDEETPKVCQFGALCSLQGRLQLLLSSEQFITGLIRIMKHENDNAFLANEEKAIRLCKALREGLKVSCFEKLQTTLRVKGFNPIPHSRSETFAFLKRFGNAVILLYIQHSDSKDINFLLALAMTLKSATDNLISDTSYLIAMLGCNDIYRIGEKLDSLGVKYDSSEPSKLELPMPGTPIPAEIHYTLLMDPMNVFYPGEYVGYLVDAEGGDIYGSYQPTYTYAIIVQEVEREDADNSSFLGKIYQIDIGYSEYKIVSSLDLYKFSRPEESSQSRDSAPSTPTSPTEFLTPGLRSIPPLFSGRESHKTSSKHQSPKKLKVNSLPEILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQNADRASRRTFSTSASRFQSDKYSFQRFYTSWNQEATSHKSERQQQNKEKCPPSAGQTYSQRFFVPPTFKSVGNPVEARRWLRQARANFSAARNDLHKNANEWVCFKCYLSTKLALIAADYAVRGKSDKDVKPTALAQKIEEYSQQLEGLTNDVHTLEAYGVDSLKTRYPDLLPFPQIPNDRFTSEVAMRVMECTACIIIKLENFMQQKV", "sequence_length": 4579, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "5b976fe4afbf54bd4709d2bf32161b5e9af58de5a57d42ffd1004136e9141045", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NZJ4.json", "taxon_id": "9606", "uniprot_accession": "Q9NZJ4", "uniprot_release": "2026_03" } ], "pfam_id": "PF05168", "short_name": "HEPN", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tric-pf05197.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05197", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tric-pf05197.yaml" } ], "pfam_ids": [ "PF05197" ], "protein_name": "Trimeric intracellular cation channel type A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLMSALSLGELALSFSRVPLFPVFDLSYFIVSIIYLKYEPGAVELSRRHPVASWLCAMLHCFGSYILADLLLGEPIIDYFSNSSSILLASGVWYLIFFCPLDLFYKCVCFLPVKLIFVAMKEVVRVRKIAVGIHHAHHHYHHGWFIMIATGWVKGSGVALLSNVEQLLRGVWKPETNEILHMSFPTKASLYGAILFTLQQTRWLPVSKASLIFVFTMFMVSCKVFLTATHSHSSPFDILEGYICPVLFGATWGGDHHHDNHGAPHGMGLGTQHSGLPAKAKEELGEGSRKKKTKKAD", "sequence_length": 298, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "09d3326678830a11be3c47bd33d01a566a9721a4960eb01375ec497d6371b54f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3TMP8.json", "taxon_id": "10090", "uniprot_accession": "Q3TMP8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/extracellular-matrix-constituent-secretion-go0070278.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070278", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/extracellular-matrix-constituent-secretion-go0070278.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/release-of-sequestered-calcium-ion-into-cytosol-by-endoplasmic-reticulum-go1903514.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1903514", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/release-of-sequestered-calcium-ion-into-cytosol-by-endoplasmic-reticulum-go1903514.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/secretion-by-lung-epithelial-cell-involved-in-lung-growth-go0061033.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061033", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/secretion-by-lung-epithelial-cell-involved-in-lung-growth-go0061033.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tric-pf05197.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05197", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tric-pf05197.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9DAV9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05197" ], "protein_name": "Trimeric intracellular cation channel type B", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d86d5187582172eaa5a328022e2bb432ed1baae3c43b9f08fa667a9d67b074c8", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEYPWDDLTLAFSRTSMFPFFDIAHYLVSVMALKQRPGAVAAAWNNPLASWLSAMLHCFGGGILSCMLLAESPLKFLTNHTNILLASSIWYIVFFCPRDLVSQGYSYQPIQFLAAGMKEVTRTWKIVGGVSDANSYYRNAWIVMIVVGWARGAGGAVVTACEQLLKGDWKPEGDEWLKMSFPCKITLLGSIMFTFQHTRHLAISKHDLMFLYTIFLVTIKVTMMMTKDTAVTLTPFEDTLTRMLFGRRQQQQFSSSEKKTEVKPSSNGSASSASKRGAEPSGGAKRHAKKED", "sequence_length": 292, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d86d5187582172eaa5a328022e2bb432ed1baae3c43b9f08fa667a9d67b074c8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DAV9.json", "taxon_id": "10090", "uniprot_accession": "Q9DAV9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tric-pf05197.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05197", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tric-pf05197.yaml" } ], "pfam_ids": [ "PF05197" ], "protein_name": "Trimeric intracellular cation channel type A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELLSALSLGELALSFSRVPLFPVFDLSYFIVSILYLKYEPGAVELSRRHPIASWLCAMLHCFGSYILADLLLGEPLIDYFSNNSSILLASAVWYLIFFCPLDLFYKCVCFLPVKLIFVAMKEVVRVRKIAVGIHHAHHHYHHGWFVMIATGWVKGSGVALMSNFEQLLRGVWKPETNEILHMSFPTKASLYGAILFTLQQTRWLPVSKASLIFIFTLFMVSCKVFLTATHSHSSPFDALEGYICPVLFGSACGGDHHHDNHGGSHSGGGPGAQHSAMPAKSKEELSEGSRKKKAKKAD", "sequence_length": 299, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d70e996db656c5cc1854dd869138b0a1304516732aa7ca248e775e187f9eb60d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H6F2.json", "taxon_id": "9606", "uniprot_accession": "Q9H6F2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tric-pf05197.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05197", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tric-pf05197.yaml" } ], "pfam_ids": [ "PF05197" ], "protein_name": "Trimeric intracellular cation channel type 1B.2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGWVPDEWSIDHDTLIDAGGYVQKLKLYPYFDAAHYVLTCLSVRHDLGPDAISFSRKHPFSCWLSCMLMSFAGSFLSCFLLGEPIISPLKQHADILLGSIVWYLVFYSPFDVVFRLATWFPVKLGLSVLKEVQRTHKIAAGVKHAVRIYPESYLVQILVGVAKGAGSGVVKIVEQLARGTWHPTNHEILRPSFTTKACVIASIVFTLERHSMYVTAPHDLVYLCVVGFFIYFKLASLCLSVHDVLMPIENVLCAVFMGGIIDAFAKAVDATKKAIHSNRVLSEEEILSKEREKVLKKKKLLAQMSNGTDKKNN", "sequence_length": 313, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "43514f91c9c11c4b2e8d91fbf6b2846fec9d5a4fb6393df6d06a08882c9de35c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NA73.json", "taxon_id": "6239", "uniprot_accession": "Q9NA73", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tric-pf05197.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05197", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tric-pf05197.yaml" } ], "pfam_ids": [ "PF05197" ], "protein_name": "Trimeric intracellular cation channel type 1B.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVPESFQLDQEILLDAGAQLHRLKMYPYFDVAHYLLMIIEVRDDLGSAASIFSRKHPLSCWLSSMLMCFADAFLANFLLGEPVIAPFKRHDDIILATIIWYLVFYAPFDGIYKIAKITPVKCVLAVMKEVKRAYKVSHGVSHAAKLYPNSYIVQVLVGTAKGAGSGIVRTLEQLVRGVWLPTHNELLRPSFATKACVVAASVLALEKSGTYLTAPHDLVYLVIVGFFVYFKLSAVILHVTDPFAPIENLFCAIFMGGIWDAVSRALAASRDRRAAGAHSNENGSSISTPEKKDQ", "sequence_length": 295, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "615bf9a77691e08f5b4ffe20bc0c3d82a794dc810983f4d36964ae3314a44717", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NA75.json", "taxon_id": "6239", "uniprot_accession": "Q9NA75", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tric-pf05197.yaml", 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"qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05253", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-u11-48k-pf05253.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/zf-chhc-u11-48k.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51800", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/zf-chhc-u11-48k.yaml" } ], "pfam_ids": [ "PF05253" ], "protein_name": "U11/U12 small nuclear ribonucleoprotein 48 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDRPPSLPHYQNPNPNLFYHYPPPNSNPNFFFRPPPPPLQNPNNYSIVPSPPPIRELSGTLSSLKSLLSECQRTLDSLSQNLALDHSSLLQKDENGCFVRCPFDSNHFMPPEALFLHSLRCPNTLDLIHLLESFSSYRNTLELPCELQLNNGDGDLCISLDDLADFGSNFFYRDCPGAVKFSELDGKKRTLTLPHVLSVECSDFVGSDEKVKKIVLDKCLGVLPSDLCAMKNEIDQWRDFPSSYSSSVLSSIVGSKVVEISALRKWILVNSTRYGVIIDTFMRDHIFLLFRLCLKSAVKEACGFRMESDATDVGEQKIMSCKSSTFECPVFIQVLSWLASQLAVLYGEGNGKFFALDMFKQCIVESASQVMLFRLEGTRSKCSGVVEDLDDARLRNKDVIMEKPFENSSGGECGKTLDSPQVISVSRVSAAVAALYERSLLEEKIRAVRYAQPLTRYQRAAELGFMTAKADEERNRRCSYRPIIDHDGRPRQRSLNQDMDKMKTREELLAEERDYKRRRMSYRGKKVKRTPRQVLHDMIEEYTEEIKLAGGIGCFEKGMPLQSRSPIGNDQKESDFGYSIPSTDKQWKGENRADIEYPIDNRQNSDKVKRHDEYDSGSSQRQQSHRSYKHSDRRDDKLRDRRKDKHNDRRDDEFTRTKRHSIEGESYQNYRSSREKSSSDYKTKRDDPYDRRSQQPRNQNLFEDRYIPTEKE", "sequence_length": 712, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "342487089c80080aa9323c718ef7df39e1ba82c76f57a9d6bbdcc6cd6eb908c9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M8X2.json", "taxon_id": "3702", "uniprot_accession": "Q9M8X2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/methyltransferase-trm13-ipr007871.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007871", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/methyltransferase-trm13-ipr007871.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zinc-finger-ccch-type-trm13-ipr021721.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021721", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zinc-finger-ccch-type-trm13-ipr021721.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zf-trm13-ccch-pf11722.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11722", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-trm13-ccch-pf11722.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/trm13-pf05206.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05206", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/trm13-pf05206.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9NUP7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05206", "PF05253", "PF11722" ], "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "64225f72ab0a50c350a1e6e6e3dc3bb65340a0f9fccf8b96f4a0e5211c27afc5", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MATSATSPHAPGFPAEGRCGYYVEKKKRFCRMVVAAGKRFCGEHAGAAEEEDARKRILCPLDPKHTVYEDQLAKHLKKCNSREKPKPDFYIQDINAGLRDETEIPEQLVPISSLSEEQLEKLIKKLRKASEGLNSTLKDHIMSHPALHDALNDPKNGDSATKHLKQQASILGNIENLKLLGPRRCFVEFGAGKGKLSHWVDIALKDAEKVHFILVEKVTTRFKVDGKHRKKNSVFERLQIDIQHLCLNKIPVLREEKLPVVGIGKHLCGMATDLALRCLVETYAASFEERNEEPLAKRIKNDKTEKEIYTLAKEGNEKNVPEKWNPVAGIVIALCCHHRCDWRHYVGKEYFRALGLGAVEFHYFQRMSSWATCGMRKTSLETSNSTTKRQDNQNDDSEEHDDGGYRITDDGADCLPGLLSVEEKKKIGHLCKLLIDQGRIQYLQQKGFSPALQYYTDPLVSLENVLLTALPNHSSSPETTA", "sequence_length": 481, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "64225f72ab0a50c350a1e6e6e3dc3bb65340a0f9fccf8b96f4a0e5211c27afc5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NUP7.json", "taxon_id": "9606", "uniprot_accession": "Q9NUP7", "uniprot_release": "2026_03" } ], "pfam_id": "PF05253", "short_name": "zf-U11-48K", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dcia-pf05258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dcia-pf05258.yaml" } ], "pfam_ids": [ "PF05258" ], "protein_name": "UPF0232 protein Rv0004", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGSVDRPDQNRGERSMKSPGLDLVRRTLDEARAAARARGQDAGRGRVASVASGRVAGRRRSWSGPGPDIRDPQPLGKAARELAKKRGWSVRVAEGMVLGQWSAVVGHQIAEHARPTALNDGVLSVIAESTAWATQLRIMQAQLLAKIAAAVGNDVVRSLKITGPAAPSWRKGPRHIAGRGPRDTYG", "sequence_length": 187, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fc966bde3eb556949ed1548b976ef1d39beab11a364db9eb264d3a753abcf732", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WFL1.json", "taxon_id": "83332", "uniprot_accession": "P9WFL1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhodococcus jostii (strain RHA1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dcia-pf05258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dcia-pf05258.yaml" } ], "pfam_ids": [ "PF05258" ], "protein_name": "UPF0232 protein RHA1_ro03670", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDDLEPTAPAAAAPEPEVKGIDLARRALEEARAAAKASGKSVGQGRRSGTGVRALRARRRRGWSGPGPDDRDPQPFGALTNAIAKQRGWSPKVSEGTVLGRWVQVVGEDIAAHAEPTGLRDGILSVSAESTAWATQLRMMQSQILAKIAAAVGDGVVKSLRITGPTAPSWRKGERHIRGRGPRDTYG", "sequence_length": 188, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c9c6891d4ca665a10e16eae95e7674e2004bf0eba99b538edcef1ccdc33ed83", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0SAG3.json", "taxon_id": "101510", "uniprot_accession": "Q0SAG3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bifidobacterium longum (strain NCC 2705)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dcia-pf05258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dcia-pf05258.yaml" } ], "pfam_ids": [ "PF05258" ], "protein_name": "UPF0232 protein BL0636", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNPPIARQLNLDETKLPAEIFERLSRRGATLKDYRRRREEAIENFGKPGRDPAELGSVMTTIAGNGVWAANMKLAQLRNHWDQVVGQAIASHSAVADFTDGVLTIRAESTVWATQLTYLIPQLTDTIRRNLKGLTITEIRVTGPAAGYTRKWARRR", "sequence_length": 156, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ff47f9b12e647095f75c9716a8f4231dd2103098dbd374c25ed6328d6f284efd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8G6K4.json", "taxon_id": "206672", "uniprot_accession": "Q8G6K4", "uniprot_release": "2026_03" } ], "pfam_id": "PF05258", "short_name": "DciA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05263", "short_name": "DUF722", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf723-pf05265.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05265", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf723-pf05265.yaml" } ], "pfam_ids": [ "PF05265" ], "protein_name": "Uncharacterized protein R47", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLLEFVDFLAKALNIHESKYDYQHVIYIDDETNVKILCNGCKNIFKTTPHTHLYLKNGECSKCFPCRKYKKLTTEKIISKLEKKYSDDFDYSEIDYRGVNYPVIISCKKCKNRFSVLPKEFLRNPKCRACGRKKNLSSREYVERAVLIHGSKYDYSKIEYRGLKCDIEIICNNCGILLKINARNHLRGRKCGCLLGNKTS", "sequence_length": 201, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "73faaf40273618f3eea60731c2bd67a6d7d7ccffea90f8e48a502ad4812eb614", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UPC5.json", "taxon_id": "212035", "uniprot_accession": "Q5UPC5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf723-pf05265.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05265", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf723-pf05265.yaml" } ], "pfam_ids": [ "PF05265" ], "protein_name": "Uncharacterized protein R97", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKYIRSRDKSNFEKFCRRAREIHGDKYSYDVSCYVNKITTTNIKCNSCGEIFTVTPRRHLSINGGCSNCTSRGGQEYLNKFIRKLTDIHGNKYDYSMIVYKNSKTPIKLKCNQCDIIFEQIPLKLIRSKYHCPVCDFRPDCRIFNYNPKSKISVDEFIKRAKNKHGDDSYDYSEINYVDLNTKVSIRCNKCSVQFEQKPRVHLEHGHGCGTFSRYTNNEWIIFAKITHGDTYDYSRVEFISSSKPVTIGCKIHGWFVQRPTNHIISKIPCKKCRVKNQ", "sequence_length": 279, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f5c4732ecc326ff31bce6ea8d7be677e28e5dfc3574d780ab6d82f72ebcbbada", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UPH3.json", "taxon_id": "212035", "uniprot_accession": "Q5UPH3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf723-pf05265.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05265", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf723-pf05265.yaml" } ], "pfam_ids": [ "PF05265" ], "protein_name": "Uncharacterized protein L763", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLITKFHLKNNLNRYNSFLEKAIKIHGNQYSYNKVYYITREDPVLILCNSCELSFLITPKKHLNKDTGQCPNCFPNKKQLRELQFIQQLLDIYGNQFDYSKISYQKSKHPVSIICAGCKFLIKKTPFELLRKKIHCPKCEPFKEYDSKSIVRCKITTQEFIKRAKERHGDRYDYSKTEYISMDDFVTIKCNNCSTEFNKKPKHHLKSVHKCCYIECKSIDKNQSPINSYRESILEKSKIITEKNTDNTQIESQEWLKWLNI", "sequence_length": 262, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "503ecea48057b8936a9e20f2d16e66f8ba06e302769f3700ef7c2372c71c591e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UPQ5.json", "taxon_id": "212035", "uniprot_accession": "Q5UPQ5", "uniprot_release": "2026_03" } ], "pfam_id": "PF05265", "short_name": "DUF723", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 9, "discovery_scanned": true, "example_count": 9, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/first-and-third-tudor-like-agenet-domains-found-in-a-family-of-arabido-cd20405.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20405", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/first-and-third-tudor-like-agenet-domains-found-in-a-family-of-arabido-cd20405.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/second-and-fourth-tudor-like-agenet-domains-found-in-the-family-of-ara-cd20406.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20406", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/second-and-fourth-tudor-like-agenet-domains-found-in-the-family-of-ara-cd20406.yaml" } ], "pfam_ids": [ "PF05266", "PF05641" ], "protein_name": "DUF724 domain-containing protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEQMIFIRKDDKVEVFSEEEELKGSYYRAILEDNPTKSGHNKLKVRYLTQLNEHRLAPLTEFVDQRFIRPVPSEDVNDGVVFVEGLMVDAYLKDGWWTGVVVKTMEDEKFLVYFDCPPDIIQFEKKKLRVHLDWTGFKWIRPDNKELVKSVFSCGTMVELRFDCAWIPVIVIKELEKDKRFLVKYWNKSYSCRESKNLIVDSLRLRPMQPPLSVGKYELLDHVEAFSGFEWRQGVVRGIVFEGRYMVSFGATKEASQFNHSDIRPPMEWEDGVWHKRTKPKRQKETSLDGNRNVQTKEPPGNEMADDVKKESGLPITLGVTATKNKTQGKVSPVPMKNGFGNESTREKMPEEPKIKYYTRKRKRGGLKLNSYINKTVLSSDRTPNVVKNSASNAEENHAKHTIMVLPFAKKSPVWKTYESLEVFKSVSHSLHFSPLFETKQDFREGYAIGMMVTYFGLLEKFKDLEADVPVSQLNSLKDSFSELEKHGFNVTTPLSRIDKLLALKDRQLYIMEELKGFDKEMTNEFSKAKQEFDDMEQKILEVKHKIIELQRQEAALKEQKEAEKEQKDAAWKKICQMESCAKDLNVELEDVEFEFETILSAPW", "sequence_length": 604, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "89ec90f662e4b8d62569d5a4bc96238f9b8cbfc367dfc41e555fee35b9a0a2db", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4I8W1.json", "taxon_id": "3702", "uniprot_accession": "F4I8W1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/first-and-third-tudor-like-agenet-domains-found-in-a-family-of-arabido-cd20405.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20405", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/first-and-third-tudor-like-agenet-domains-found-in-a-family-of-arabido-cd20405.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/second-and-fourth-tudor-like-agenet-domains-found-in-the-family-of-ara-cd20406.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20406", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/second-and-fourth-tudor-like-agenet-domains-found-in-the-family-of-ara-cd20406.yaml" } ], "pfam_ids": [ "PF05266", "PF05641" ], "protein_name": "DUF724 domain-containing protein 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFSPGTMVEVSSKINEGEVVWVPSMVIKEFKEDDEYKYIVKDKSFSCEGKKARPNKTVDLSSLRPIPVSVDEYQLEENVEVFLDGMGWRHGRVMGSQERAIGTLSQKWYFVRLESTKKQLTFKQSDLRPLKVWEDGVWKVLQTRELSFTQGSGDKTGDSVRNANESDPPLTPPPGIITPPLKQIEAGTQRKALSKKTLPRNQNGSGNDSTLENENSEDNNRKRKREENLGCVASVEQDKPKDTTMVLPFEKKLRIWETLESMEVFKTVPQSPHFSPLLVESREDSREMSAVGMMLTFFGLLDEVKALQHNDPISFFISLTNSFAELEKHGFNVKAPQSRINKLLSLRDRQSKKTEELKDAEKVTAEKESVKAENKRKILELQRLNEEMDKEIAQSKSCAAKIVQQLDDVKLEFLATASAPW", "sequence_length": 421, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "94378ef604ffd358cd993554b628b0563b04bf1132089d59315b7c340c7c1c2a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4KEA4.json", "taxon_id": "3702", "uniprot_accession": "F4KEA4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/first-and-third-tudor-like-agenet-domains-found-in-a-family-of-arabido-cd20405.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20405", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/first-and-third-tudor-like-agenet-domains-found-in-a-family-of-arabido-cd20405.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/second-and-fourth-tudor-like-agenet-domains-found-in-the-family-of-ara-cd20406.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20406", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/second-and-fourth-tudor-like-agenet-domains-found-in-the-family-of-ara-cd20406.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/agenet-domain-plant-type-ipr014002.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR014002", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/agenet-domain-plant-type-ipr014002.yaml" } ], "pfam_ids": [ "PF05266", "PF05641" ], "protein_name": "DUF724 domain-containing protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEETIRKGSEVEVSSTEEGFADAWFRGILQENPTKSGRKKLRVRYLTLLNDDALSPLIENIEPRFIRPVPPENEYNGIVLEEGTVVDADHKDGWWTGVIIKKLENGKFWVYYDSPPDIIEFERNQLRPHLRWSGWKWLRPDIQELDKSMFSSGTMAEVSTIVDKAEVAWFPAMIIKEIEVDGEKKFIVKDCNKHLSFSGDEARTNSTIDSSRVRPTPPPFPVEKYELMDRVEVFRGSVWRQGLVRGVLDHNCYMVCLVVTKEEPVVKHSDLRPCKVWEDGVWQDGPKQTPVIETPSNVMKTKPMRSCSGAKSMTPKRTTKHARRSLNLEKSAETLTKAESRAATGELRSKRANDVINDNTPLVITPQVKPIASVEPVTPSRVRTATPLKQTKADTQGKSSPKKTLEPMRDENGLENSTRQKVLEEKNSEKKGRKRKRQEEHNSDLKETDESCNGQMAEINDTSSICNDVDDQPLAAWINLPTETSIDHSPIVVNNAAIATDVEERQANDTLMILPFAKKSPFWKMYETQEVCKIAPQSPHFSPLFEAKEELREWTAVGMMVSFYGLLEEVKNLQLDVSPSTLGSLSCSFAELEKHGFDVAAPQSRINKMLSLQDERAKKAEERKGLEKKIEAGEIEGHTYEEEMAELELKILELKRQQVVAKEMKEATDKVTSGMKSYAEMINQEIEDLRLEFQSTASAPW", "sequence_length": 701, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc75ab7f738b0174f8e98332cc7fd1e7639d509b74743be8d58384e2c0960b29", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O22897.json", "taxon_id": "3702", "uniprot_accession": "O22897", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf724-pf05266.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf724-pf05266.yaml" } ], "pfam_ids": [ "PF05266" ], "protein_name": "DUF724 domain-containing protein 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MREKHYSEDNSRKRKRGELEHNSDLNETVLPSDWTPDPVKNFAADDDDEETKAKDATMVLPFVKKSPVWKIYESMEVFKRVPQSPHFSPLFEAKEDFREGFALGMMVTFSGVLEKVEDLKTDVPIRQLNSLKDSFTELEKHGFTVTAPLSRIAKLLALKDRQLKILEELKVFDKEMKDESSKKHKAEQEFGEMERKILEVKNKVLELQKQEAALEKQKDATYEKICKMESRARDLGVELEDVE", "sequence_length": 243, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "48b200155561dd482a824757f4c4393b2fbcf76fdad5c2a9ed2924392796d63e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0WNB1.json", "taxon_id": "3702", "uniprot_accession": "Q0WNB1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/second-and-fourth-tudor-like-agenet-domains-found-in-the-family-of-ara-cd20406.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20406", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/second-and-fourth-tudor-like-agenet-domains-found-in-the-family-of-ara-cd20406.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/agenet-domain-plant-type-ipr014002.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR014002", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/agenet-domain-plant-type-ipr014002.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/agenet-like-domain-ipr008395.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008395", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/agenet-like-domain-ipr008395.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf724-pf05266.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf724-pf05266.yaml" } ], "pfam_ids": [ "PF05266", "PF05641" ], "protein_name": "DUF724 domain-containing protein 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLTTGRKEKLSVSKGSEIEISSQEYEYGSGNVWYCVILEENLAKSKRKKLSVRHLDPLLKYDYSPPLIKTTVHRFMRPVPPPDPFPEVDFEEGDVVDAAYKGGWCSGSVVKVLGNRRFLVYLRFQPDVIELLRKDLRPHFVWKDEEWFRCEKQQLIESDFSAGKSVEVRTKVDKLGDVWAPAMVIKEDEDGTMLVKLKTLKEEEVNCTKISVSYSEIRPSPLPIGLRDYKLMENVDALVESGWCPGVVSKVLAGKRYAVDLGPNRESKEFSRLQLRPSIEWKDGIWHRKEKVSGSEESSHAVEETAASTRIRITVRTALKEKKALGTGINVRTTRSSSGAMHNPLPASFNGGDVAEAGRVSVTVNETPLFETAALSGELGNSLADVVMNESAPVTSQPEIAAPKEFHPSVVLGVAAAVKTQGKTTPKKKLQAMKNQKSSTNDSVGEKVSVNKRKRGQPRKFIVAEPKQKIGVSGNNSKAATIEHADMTDDDRPLASWVHTGNSSSGQSVSRTPDIGLNTVVEKHVDIVETPPGRESTMVLPFVKKSQLWKVLESMEVFKVVPQSPHFSPLLESEEECREGDAIGRMVMFSSLLEKVNNLQVDDPISSINRIDECFLKLEKHGFNVTTPRSRIAKILSIKERQTCALEELKAVEEKITENDNKRRKYEEDIVELQRQEVLMKEAKVTLDNEIARMQSQAAVLDQEVQNVDHEFQAILAAPWK", "sequence_length": 722, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ca769b1937e60aeb032d5a46092ffc39eccd32f035985d3b2ffad8b5939c8089", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8H0V4.json", "taxon_id": "3702", "uniprot_accession": "Q8H0V4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/first-and-third-tudor-like-agenet-domains-found-in-a-family-of-arabido-cd20405.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20405", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/first-and-third-tudor-like-agenet-domains-found-in-a-family-of-arabido-cd20405.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/second-and-fourth-tudor-like-agenet-domains-found-in-the-family-of-ara-cd20406.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20406", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/second-and-fourth-tudor-like-agenet-domains-found-in-the-family-of-ara-cd20406.yaml" } ], "pfam_ids": [ "PF05266", "PF05641" ], "protein_name": "DUF724 domain-containing protein 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGRQVPSESLSLSEGCEVEISYKNNGNESVWYKAILEAKPNSIFKEELSVRLLKDDFSTPLNELRHKVLIRPIPPTNVQACIDIEIGTFVDADYKDAWWAGFVVKVIDDDKFWVCFDSPPDIIQFDRNHLRPTLEWVDEKIYSWWIIGSTRNSEFLKRLAEEPMFSPGTIVELCSKRDEGEVVWVPALVYKEFKENDEYRYIVKDKPLIGRSYKSRPSKTVDLRSLRPIPPPIRVKEYRLDEYIEVYHDGIGWRQGRVVKSEGGVMGSLFQNWCTLLLEATKKQLMFKQSDLRPLRVWEDGVWKTRESSLTQGSGDKTEVETQRKTFPKKTLPRNQNGSGNDSTLENENSNRKRKREENLCSGSSVEETNILFEKKLPVWKILESMEVFKTIPQSPHFRPLAEIREDSREMLAVGMMLTFSCLLEQVKALQHDEARSSFISLSNSFAELEKHGFNAQVAQLRINKLLTLRGMQSRKMDELKGAKKVTAEKESVKVENERKILELQRLNEEMAKEIAQSMSCEGKILQQLDNMKLEFQATASAPWPKWAFRST", "sequence_length": 552, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a29cf6504ccb9be5918396db5621ed0e6bb0b8b6e79cdeb07313c58c9bb3f754", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FFA0.json", "taxon_id": "3702", "uniprot_accession": "Q9FFA0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/first-and-third-tudor-like-agenet-domains-found-in-a-family-of-arabido-cd20405.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20405", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/first-and-third-tudor-like-agenet-domains-found-in-a-family-of-arabido-cd20405.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/second-and-fourth-tudor-like-agenet-domains-found-in-the-family-of-ara-cd20406.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20406", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/second-and-fourth-tudor-like-agenet-domains-found-in-the-family-of-ara-cd20406.yaml" } ], "pfam_ids": [ "PF05266", "PF05641" ], "protein_name": "DUF724 domain-containing protein 9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFSPGTTVEVSSKINNKEVVWVPAVVIKEFKEDDEYKYIVRVYDKSFSCKGNKAARLNKTVDLCSLRPTPPSISVEEYQLKEYVEVFHDGMGWRQGRVMKIQERVMLSQGRVMVSQGRVMGNLSQKCYIVLLEATKKQISFKQSDLRPLQVWEDGVWKMLQTRESSLTQGSGDETSDSVRNANESDPPVTPRPGITTPPLKQIEAETQRKTLPRNQNASVNDSTRENENSEDINRKRKREESLCSDASVEDTTMTLPFEKKLSIWKTLESVETVPQSPHFSPLVETREDCREMSAVGMMLTFPCLLEEVKSLQHDNSISSLISLSNNFCELEKHGFNVKAPQSRISKLLSLRGKQSMKMDELKGAEKVTAEKESIKIENERKILELQRLNEEVDKEIAQSKSCAAKIVQQLEDVELQFQTTASAPW", "sequence_length": 426, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "25a97edf7e7af87502ac1f9fb0f345b4aadc193946136bd8f9fe3a1ab41892ab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FFA2.json", "taxon_id": "3702", "uniprot_accession": "Q9FFA2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/first-and-third-tudor-like-agenet-domains-found-in-a-family-of-arabido-cd20405.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20405", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/first-and-third-tudor-like-agenet-domains-found-in-a-family-of-arabido-cd20405.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/second-and-fourth-tudor-like-agenet-domains-found-in-the-family-of-ara-cd20406.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20406", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/second-and-fourth-tudor-like-agenet-domains-found-in-the-family-of-ara-cd20406.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/agenet-domain-plant-type-ipr014002.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR014002", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/agenet-domain-plant-type-ipr014002.yaml" } ], "pfam_ids": [ "PF05266", "PF05641" ], "protein_name": "DUF724 domain-containing protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELQTMKITKDCVVEVSSEEEGFEGAWFRAVLEENPGNSSRRKLRVRYSTLLDMDGSSPLIEHIEQRFIRPVPPEENQQKDVVLEEGLLVDADHKDGWWTGVVVKKMEDDNYLVYFDLPPDIIQFERKQLRTHLIWTGGTWIQPEIEESNKSMFSPGTMVEVFSAKEAVWSPAMVVKETDVDDKKKFIVKDCNRYLSCNGDEARPTNIVNSRRVRPIPPPSSVDKYALLESVETFSGLGWHKGQVRKILSENRYTVRLEATQQESTIRHSDLRPFMVWEDGVWYNDLKQKPIKETPPTILKRKPMRSCSAAKSMTPTSATKHLRSFLNSKEISETPTKAKFVSATRELGKNKADAVMNDKTHLLITPQETSIAPVITVTPLKQQDAETEGKKSPKKTPEPVKHQNGLENSSTQHEMPEEENSNEKSRKRKREQNQNSNLNETDETCNVSKAGVNGTSDTIRVDDVDDQPLSSWINIPTVLSSDQSSNVVDNSAADVEETQAKGALTIEPFTKNLPFWKTYEMEKGYKTVPQNPHFSPLLEFKEDIREWSAVGMMVSFYGLLEEVKKLQLDVSSSKLGSLSTCFAELEKHGFDIATPQSRINKVLSLQVGRAKKVEERKCLEKRIEAEEIEMQKFEHEMVEVERKMLELKRRAEVAKEKKEAADKMIVEMKSSAETIDQEIANVELEFITSVLAPW", "sequence_length": 695, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a885a77b274633c3bc9d2427a51ed0bf121e576e8602556939a46c00ba74e24a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FZD9.json", "taxon_id": "3702", "uniprot_accession": "Q9FZD9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/first-and-third-tudor-like-agenet-domains-found-in-a-family-of-arabido-cd20405.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20405", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/first-and-third-tudor-like-agenet-domains-found-in-a-family-of-arabido-cd20405.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf724-pf05266.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf724-pf05266.yaml" } ], "pfam_ids": [ "PF05266", "PF05641" ], "protein_name": "DUF724 domain-containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIFKDCEVEIFSEEDGFRNAWYRAILEETPTNPTSESKKLRFSYMTKSLNKEGSSSPPTVEQRFIRPVPPENLYNGVVFEEGTMVDADYKHRWRTGVVINKMENDSYLVLFDCPPDIIQFETKHLRAHLDWTGSEWVQPEVRELSKSMFSPGTLVEVSCVIDKVEVSWVTAMIVKEIEESGEKKFIVKVCNKHLSCRVDEAKPNMTVDSCCVRPRPPLFFVEEYDLRDCVEVFHGSSWRQGVVKGVHIEKQYTVTLEATKDKLVVKHSDLRPFKVWEDGVWHNGPQQKPVKESPSNAIKQKPMCSSSGARPMTPKMATKHARISFNPEENVEELSVAETVAATGKLEKMGIAEESVSCVTPLKQTEANAEGNKLEPMRNQNCLRNDSTQQMLPEEENSKDGSTKRKREEKHNSASSVMDEIDGTCNGSESEISNTGKSICNNDDVDDQPLSTELPYYQSLSVVNSFAADAEETPAKSARTISPFAKKLPFWKSYETDELYKSLPQSPHFSPLFKAKEDIREWSAVGMMVTFYCLLKEVKDLQLDDSSSKLSSLSSSLAELEKHGFNVTDPLSRISKVLPLQDKRAKKAEERKCLEKKIECEEIERKRFEEEFADFERIIIEKKRQALVAKEKKEAADKRIGEMKTCAETIDQEIKDEELEFQTTVSTPW", "sequence_length": 670, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d96740d72ef3bb344e8a8e0b7884a928248b41853d1463944a6c179e60d2113c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZVT1.json", "taxon_id": "3702", "uniprot_accession": "Q9ZVT1", "uniprot_release": "2026_03" } ], "pfam_id": "PF05266", "short_name": "DUF724", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Glossina palpalis palpalis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf725-pf05267.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05267", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf725-pf05267.yaml" } ], "pfam_ids": [ "PF05267" ], "protein_name": "Protein TsetseEP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFFISFAFLCLVLSCVAALSPDQVESRLKSYVEKRSFTLLRSARVSRAGTNTVQCYDKYVPLIRQAAADGKLACDKCAQEGQNAREEETKKSEVIRESLNIKVSSIENGLGSCVAKYDVLEYFTCLRDHASESQTTAAEVGKTAAVIVEGLNIVLTNIDLREKYCTDQAFEQAQEKTDALFSELENCLIEGLPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPESKPNSLFNF", "sequence_length": 374, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aca7fa7d8e5a7bee0408e76cc2fd968898b6cab117d301c2912fbb55df0824d6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8T4N5.json", "taxon_id": "66268", "uniprot_accession": "Q8T4N5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Glossina morsitans morsitans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf725-pf05267.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05267", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf725-pf05267.yaml" } ], "pfam_ids": [ "PF05267" ], "protein_name": "Protein TsetseEP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFFISFAFLCLVLSCVAALSPDQVESRLKSYVENRSFALLRSGRVARAGTNTVQCYDKYVPLIRQAAAEGKFASDKCAQEGQNAREEETKKSEVIRESLNVKVASIEKGLGACVAKYDVLEYFTCLRDHASESQTAAGEVGKTSAVIVEGLNIVLTNIELREKYCIDQAFEQAQEKSDILFTELENCLIEGLPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQPEPESKPNSLFNF", "sequence_length": 320, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9e1baeff7f2222dd0de8d60a5b09e9d01a9a061dc88e8f2f24f197e52a223cd6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q95P09.json", "taxon_id": "37546", "uniprot_accession": "Q95P09", "uniprot_release": "2026_03" } ], "pfam_id": "PF05267", "short_name": "DUF725", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/clathrin-coated-vesicle-cargo-loading-go0035652.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0035652", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/clathrin-coated-vesicle-cargo-loading-go0035652.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf726-pf05277.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05277", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf726-pf05277.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P43564", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05277" ], "protein_name": "Probable lipase MIL1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d63387cb5d42f42ef98daa564d9622ac65cedf1f2ba7c66b417ed6f7d8966e8b", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSDSEEDLGVQLKGLKIARHLKESGEHTDEESNSSPEHDCGLSNQDDLTVMHTQAKEEVFKRREEDGTRTEDALHEGEAGKEGTGFPSSQSVCSPNEADSGIDRADKPILLDPFKSVHDTDPVPGTKSRSNSDSDSDSDDGGWQEMPAVSSFNIYNHRGELELTSKVRNSEQASETSPTVPPGKNCKSVNDSRFDYTKMAAEQQAQRSYRTNKKTDFLFDHKVLKKKINSSQTSVNLTSSPSTTSLNNEKNNDDDDDDSYDEYEDDVEPVNDLNRDSQLNITKNLLSDMEKFAYVGAINILANQMCTNLATLCLCIDIKSHKKLAHRLQFTQKDMAAWKTVVLSRLYDHLGISQEEIVMIEKLSLHKIQLEDLCKCLKTTQSIDNPWENDRDHEEDGIEETTERMSPNEQNGSVQASTPDPEQSATPETPKAKQSPLSSDVPGKVLDPENVKSQDKLNIDVAWTIICDLFLICLQSSTYDSRSRTLLINFAKVLNMTSLEICEFERRVTDSLDMEQSTEDQVWDEQDHMRNRRRSKRRKKMAYVALAMVGGSLVLGLSGGLLAPVIGGGIAAGLSTIGITGATSFLTGVGGTTVVAVSSTAIGANIGARGMSKRMGSVRTFEFRPLHNNRRVNLILTVSGWMVGNEDDVRLPFSTVDPVEGDLYSLYWEPEMLKSIGQTVSIVATEIFTTSLQQILGATVLTALISSIQWPMALSKLGYILDNPWNVSLDRAWSAGKILADTLIARNLGARPITLVGFSIGARVIFSCLIELCKKKALGLIENVYLFGTPAVMKKEQLVMARSVVSGRFVNGYSDKDWFLAYLFRAAAGGFSAVMGISTIENVEGIENINCTEFVDGHLNYRKSMPKLLKRIGIAVLSEEFVEIEEMMNPEEVKRKRKLINDVDAAQKKLSERKKHNSWVPKWLKPKKSKWKVMVEEAVEEGRDMQDLPENDVNNNENENPDEHEGIARQKRRDAALVDHGALMHELQLIKQAMHEDEIKNKACLPGEDKEVESSNDFLGESHYKPPSTPKINPPQSPNNFQLLSAGRTILPEDDDFDPRGKKKVEFSFPDDI", "sequence_length": 1073, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d63387cb5d42f42ef98daa564d9622ac65cedf1f2ba7c66b417ed6f7d8966e8b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P43564.json", "taxon_id": "559292", "uniprot_accession": "P43564", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf726-pf05277.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05277", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf726-pf05277.yaml" } ], "pfam_ids": [ "PF05277" ], "protein_name": "Transmembrane and coiled-coil domain-containing protein STS1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATTLTPTQRYAAGALLALALRQAQIHQSVLLGAHHHHDDDDEEQGRTSTSSGGGGGSSSSSSNSGAGADADLWTHDSHGLLRPVFRFLEIDPKAWSGLEETAASSEAKHHIGAFLRIIFEEDGESSSDRSVQELALAKGVDVMVMSLGNDSEVGNTIKGGDQDALPSSSGTDKSPGESSHDDQLGINKLTLDDIPANNHRKMALLFALLSACVADKPVSQEEEDRKSTRFRKGYDARHRVALRLLSTWLDVKWIKMEAIEVMVACSAMAAAKEQEQSQESASPKSKWEKWKRGGIIGAAALTGGALLAITGGLAAPAIAAGFGALAPTLGTLVPVIGASGFAAMATAAGSVAGSVAVAASFGAAGAGLTGSKMARRIGSVKEFEFKPIGENHNQGRLAVGILISGFAFDEDDFCRPWEGWQDNLERYILQWESKHIIAVSTAIQDWLTSRLAMELMKQGAMRTVLSGLLAAFAWPATLLAATDFIDSKWSVAIDRSDKAGKMLAEVLLKGLQGNRPVTLIGFSLGARVIFKCLQELALSSDNEGLVERVVLLGAPVSVKGERWEAARKMVAGRFVNVYSTDDWILGVTFRASLLTQGLAGIQAIDVPGVENVDVTELVDGHSSYLSAAQQILEHLELNTYYPVFVPLSAANEETDGTVAQ", "sequence_length": 661, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "39874e66d1fa3c1f88df736d930d8be5e1b5b47d211b76fff951546b4ad15a7b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q10SS2.json", "taxon_id": "39947", "uniprot_accession": "Q10SS2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf726-pf05277.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05277", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf726-pf05277.yaml" } ], "pfam_ids": [ "PF05277" ], "protein_name": "Transmembrane and coiled-coil domain-containing protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"DUF726", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sinorhizobium fredii (strain NBRC 101917 / NGR234)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf736-pf05284.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05284", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf736-pf05284.yaml" } ], "pfam_ids": [ "PF05284" ], "protein_name": "Uncharacterized protein y4eB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mic19-mic25-pf05300.yaml" } ], "pfam_ids": [ "PF05300", "PF06747" ], "protein_name": "MICOS complex subunit Mic25", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSAESAEARRVSFEMDEEERVRVLQGIRLSESVVNRMKDCSQPSAGEQLVPGFGPSSSAPVPTVPLPAISVPTVPAPTTPVPTAPSSSVRGLPGGTCKGPLTDVKVPSAESGGGLQSSAVKEDLKKFQQEQLAVQDEMVRVAKKEKEAAEKHLKASLPKKKASLTHEQQQSARLARELEDREAELSRRDTFYKEQQGRIQEKNAELYKLSSQQFHEAASKAESTIKPRRVEPVCSGLQAQILRCYRDHLHEVLLCSDLVKAYQHCVSTARKG", "sequence_length": 273, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c0f9177167a923ef9065ba630f580b3710a7022b1731d12f87cf65d36ef90e86", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q91VN4.json", "taxon_id": "10090", "uniprot_accession": "Q91VN4", 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"MGSTESSEGRRVSFGVDEEERVRVLQGVRLSENVVNRMKEPSSPPPAPTSSTFGLQDGNLRAPHKESTLPRSGSSGGQQPSGMKEGVKRYEQEHAAIQDKLFQVAKREREAATKHSKASLPTGEGSISHEEQKSVRLARELESREAELRRRDTFYKEQLERIERKNAEMYKLSSEQFHEAASKMESTIKPRRVEPVCSGLQAQILHCYRDRPHEVLLCSDLVKAYQRCVSAAHKG", "sequence_length": 235, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "69c9ec55719353b9a80711e031d542c4871588561d4ae71dd6a1a8de2838af3f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BRQ6.json", "taxon_id": "9606", "uniprot_accession": "Q9BRQ6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mic19-mic25-pf05300.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": 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"url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/mib-complex-go0140275.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/micos-complex-go0061617.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061617", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/micos-complex-go0061617.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/mitochondrial-crista-junction-go0044284.yaml", "qualification_status": 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"path": "data/traits/sequence/family/pfam/mic19-mic25-pf05300.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mic19-mic25-pf05300.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/chch.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51808", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/chch.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9NX63", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05300" ], "protein_name": "MICOS complex subunit MIC19", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1646b8d13a113f748c8b668e19fd7e5cfc70611d97cb8e981c9a8055bdd32ef4", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGGTTSTRRVTFEADENENITVVKGIRLSENVIDRMKESSPSGSKSQRYSGAYGASVSDEELKRRVAEELALEQAKKESEDQKRLKQAKELDRERAAANEQLTRAILRERICSEEERAKAKHLARQLEEKDRVLKKQDAFYKEQLARLEERSSEFYRVTTEQYQKAAEEVEAKFKRYESHPVCADLQAKILQCYRENTHQTLKCSALATQYMHCVNHAKQSMLEKGG", "sequence_length": 227, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "1646b8d13a113f748c8b668e19fd7e5cfc70611d97cb8e981c9a8055bdd32ef4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NX63.json", "taxon_id": "9606", "uniprot_accession": "Q9NX63", "uniprot_release": "2026_03" } ], "pfam_id": "PF05300", "short_name": "MIC19_MIC25", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Plasmodium falciparum (isolate 3D7)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gskip-dom-pf05303.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05303", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gskip-dom-pf05303.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/clu-n-pf15044.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15044", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/clu-n-pf15044.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/eif3-p135-pf12807.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12807", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/eif3-p135-pf12807.yaml" } ], "pfam_ids": [ "PF05303", "PF12807", "PF13236", "PF13424", "PF15044" ], "protein_name": "Clustered mitochondria protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGKSNKSKAKRAAQSTTTNSTTDVKSDAPAPPVAATVPATAPVTAAAAPVATAAAPVTAPDNGTLTAVDSAVPEANEVAPTIPKADESESQVENNDAQPKQGELRLYPVSVKTQSGGKMELQLNPGDSVMDIRQFLLDAPETCYFTCYELLLRNKDGETHHLEDYNEISEVADITIGGCSLEMVAALYDDRSIRAHVHRARDLLSLSTLHSSLSTTLALQYDAALNKVQNPGDKPKSDVPELECLGFMEDVPGSLKKLINSTSEEIRSVENIVFSSFNPPPSHRRLVGDLIYLDVVTLEGNKYCITGTTKTFYVNSSSGNILDPRPSKSGFEAATLIGLLQKLSSKFKKAFREVMEKKASAHPFENVQSLLPPHSWLRTYPVPDHKRDAARAEEALTISYGSELIGMQRDWNEELQSCREFPHTSPQERILRDRALYKVSSDFVDAALNGAIGVISRCIPPINPTDPECLHMYVHNNIFFSFAVDADIEQLSKKRPSNQMTEKVSSSEKVSCTEGTCDNEEHNNCNEAPLVENEQATYASANNDLKGTKLYQEADVPGLYNLAMAIIDYRGHRVVAQSVLPGILQGDKSDALLYGSVDNGKKICWNEDFHAKVLEAAKLLHIKEHSVIDASETVFKLAAPVECKGIVGSDNRHYLLDLMRVTPRDANYTGPESRFCVLRPELITSFCQAESLEKSKFKTKADEGGDDSSNVSADTSKVGDALIDGEANGASNSDQKSISDKQNTTAEDYAAGSSESSKSCDQIAFNPNVFTDFTLGGNQEEIAADEENVKKVSSYLVDVVLPKFIEDLCTLEVSPMDGQTLTEALHAHGVNVRYIGRVANGVKHLPHLWDLCLNEITVRSAKHILKDILRDIEDHDIGSAVSHFLNCFFGNYQTAGGKASANSSTAKNQKKFFGADQPITKKGQGRGKGKASSKKSFSSYMMVDSNILWSDIQEFAKAKYEFELPELSRTTAKKVSVLRNLCQKVGVSIAARKYDFSANTPFETSDILDLRPVIKHSVPVCSEAKDLVEMGKVQLAEGMLSESYTFFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALQNMGRALLLLGLSSGPDHPDVAATFINVAMMYQDMGKMDTALRYLQEALKKNERLLGPEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGDDDSRTRDSLNWMKTFKMRELQMTAQKQKGQAANAANTQKAIDLLKAHPDLIHAFQNAAATGRTNALNSAVLGETQPRGRGFDERAARAAAEVRKKAAAKGLLVRPQGGVPVQAMPPLSQLQNMINTATVSSEKGGENGEAKVQEKKESSENGKTENLAPAGLGAGLTSLDKKKQKAKK", "sequence_length": 1407, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "317adc9420d91fd1face535a61df8d4e5bef0707035e858c16e280a7e8196486", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4J5S1.json", "taxon_id": "3702", "uniprot_accession": "F4J5S1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/an-uncharacterized-central-domain-of-clu-mitochondrial-proteins-mutati-cd15466.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd15466", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/an-uncharacterized-central-domain-of-clu-mitochondrial-proteins-mutati-cd15466.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/clu-central-domain-ipr033646.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033646", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/clu-central-domain-ipr033646.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/clu-domain-ipr025697.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025697", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/clu-domain-ipr025697.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/clustered-mitochondria-protein-n-terminal-ipr028275.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028275", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/clustered-mitochondria-protein-n-terminal-ipr028275.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gskip-domain-ipr007967.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007967", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gskip-domain-ipr007967.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/clu.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/clu.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/hypothetical-protein-hspc210-3-30-2280-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.2280.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/hypothetical-protein-hspc210-3-30-2280-10.yaml" } ], "pfam_ids": [ "PF05303", "PF12807", "PF13236", "PF13374", "PF15044" ], "protein_name": "Clustered mitochondria protein homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLGSETKTDVEVPIINGKHEIPQEENDSGHSSINTPDSSEPDKQVDKFVKITIQPSCGDAFELHLSDNELVQELYQTLLDREATCHRTCFSLYLNGTAVDNYSEVRAIPGFVDGCTLNVVDEPYTIRDARLHLRQVRELLKFGLTEDQHEPPCTNDAQSYLTTINLQPEEKKEPKPSDILPPDHALPGCKERSLAHLLVPQPKELIALKDIAFSPYNPPPGPRKLRGDVLYIDITTVENRIYHVTCCTRGFYVNNSQDGRFDPTVSNSNKTVYQSVIELLQNVSPGFKKVYPQILKRRQEKTLVERLPTSYPVSSWVGNPLKTDGYMSDSLRAIELTEPFRVGFEDHMPGLLRDWNEELQTTFEMTRKSISERVIRDRSYYKIHADYVNAAARGVQSILDGNILAINPGEDKKTHMYIWNNIFFSLGFDVRDHYKELGGDAAAFAATSTDLQGVRAFATLDDPKLNTLGMAIFDYRGYRVTAQSIIPGILEREQEQSVVYGSIDFGKTVVSDEKYHELLEDAAHKLKMLPHTVISEKDGVKEELKLYTSYEAKGIIGNDGRKYVLDLLRSMPPDVHYLDDAEVSEAAKTLGYPRKFPHKLSALRRELIDAFCESRLVTFIQLTAKKIRDLITESKEKNDETLIKQAAEAETELSLLFMAISEDKEFEAKNKVVQDAIKEACAVVHSIYEDRYVMKFNPDCFSSNVKHAPTENLERQRRVVVDAADFLLTQKIPELVQNLKDCVVQPIDGDNLADIMHINGINIRYLGEIGKRLENSVSFARPLVLSDIVARSAKHVIRKINVQITADQLSASTSHILNCLFSVVLDPSPIAANVAKKANKKNGKKRVTSAWSSLTTSALWNSIREDSASYYGYPIEADSLEKFTELHDIQKTALFRRICKVMGVQLVARDYQLDNSTAKKTSIFVEDDIINFFPIIKHHEPFTADAKKMFIRGQQAMSIGASREAYECIGESLNLMTLVYGVMHPDMPQCLRALARLSHVLGETGDALNNQHKAAVMSERLIGLDAGNTIIEYINLAHFAFGALLIPGSLRPLYRARYLMNLVFGEKHPVMAQIDANIGLILFTVQEFDTALKYLQSADAITKTIGEPRKLKTGLISNLIARTHAARGDFRAALVAEKETFAIYSELYGPNHPRVNESSEYLRTLTQQAVTFQKKMLKLDNSTNITELFQAQPPTVTSLFDTLNIINGILIIGVPGLSSLGKQQNGTTEESKTTDVAAQLDNETLD", "sequence_length": 1247, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1d89db5a8664ee06ac600d3d9c8e73fd78b1d4fe965c184bbf621394c02242ed", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P34466.json", "taxon_id": "6239", "uniprot_accession": "P34466", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/kinase-regulator-activity-go0019207.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0019207", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/kinase-regulator-activity-go0019207.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gskip-domain-ipr007967.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007967", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gskip-domain-ipr007967.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/gskip-domain-superfamily-ipr023231.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/gskip-domain-superfamily-ipr023231.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/hypothetical-protein-hspc210-3-30-2280-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.2280.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/hypothetical-protein-hspc210-3-30-2280-10.yaml" } ], "pfam_ids": [ "PF05303" ], "protein_name": "GSK3B-interacting protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METDYNPVELSSMSGFEEGSELNGFEGADMKDMQLEAEAVVNDVLFAVNHMFVSKSMPCADDVAYINVETKERNRYCLELTEAGLRVVGYAFDQVEDHLQTPYHETVYSLLDTLSPAYREAFGNALLQRLEALKRDGQS", "sequence_length": 139, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "be05e49f70ad1c1255694d86005fabebdfda243d26979b66025fd68214170206", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BGR8.json", "taxon_id": "10090", "uniprot_accession": "Q8BGR8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/kinase-regulator-activity-go0019207.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0019207", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/kinase-regulator-activity-go0019207.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gskip-domain-ipr007967.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007967", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gskip-domain-ipr007967.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gskip-dom-pf05303.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05303", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gskip-dom-pf05303.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/gskip-domain-superfamily-ipr023231.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/gskip-domain-superfamily-ipr023231.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/hypothetical-protein-hspc210-3-30-2280-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.2280.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/hypothetical-protein-hspc210-3-30-2280-10.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9P0R6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05303" ], "protein_name": "GSK3B-interacting protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "95c9e7564316761048418c035af57f359a87d652cd151d26fe96743725042943", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "METDCNPMELSSMSGFEEGSELNGFEGTDMKDMRLEAEAVVNDVLFAVNNMFVSKSLRCADDVAYINVETKERNRYCLELTEAGLKVVGYAFDQVDDHLQTPYHETVYSLLDTLSPAYREAFGNALLQRLEALKRDGQS", "sequence_length": 139, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "95c9e7564316761048418c035af57f359a87d652cd151d26fe96743725042943", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9P0R6.json", "taxon_id": "9606", "uniprot_accession": "Q9P0R6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gskip-domain-ipr007967.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007967", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gskip-domain-ipr007967.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/gskip-domain-superfamily-ipr023231.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/gskip-domain-superfamily-ipr023231.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/hypothetical-protein-hspc210-3-30-2280-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.2280.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/hypothetical-protein-hspc210-3-30-2280-10.yaml" } ], "pfam_ids": [ "PF05303" ], "protein_name": "Protein GSKIP homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALVQSDENDFHALREAQRMVDSCQDFADHLIVAEFLPHCRGVAYINIRTLEQVIYCVQLSRAGYRIVSYEFDDVADEVANCDTVYESAHQLLAGISPLYGEKYGFGREPLGKRKEKQS", "sequence_length": 119, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "db3ce44635f2fa635f424f973fcf679a6c5a9772e8dca2414e5670c1e12bf430", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9V8F3.json", "taxon_id": "7227", "uniprot_accession": "Q9V8F3", "uniprot_release": "2026_03" } ], "pfam_id": "PF05303", "short_name": "GSKIP_dom", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Tobacco rattle virus (strain PSG)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf728-pf05304.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05304", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf728-pf05304.yaml" } ], "pfam_ids": [ "PF05304" ], "protein_name": "16 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTCVLKGCVNEVTVLGHETCSIGHANKLRKQVADMVGVTRRCAENNCGWFVCIIINDFTFDVYNCCGRSHLEKCRKRVEARNREIWKQIRRIQAESSSATRKKSHNSKNSKKKFKEDREFGAPKRFLRDDVPLGIDQLFVF", "sequence_length": 141, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9a0335f4a9c6d997a840434937e44bebb143f427df3613dc49d905fbfcb32d5a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P05075.json", "taxon_id": "12297", "uniprot_accession": "P05075", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Tobacco rattle virus (strain TCM)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf728-pf05304.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05304", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf728-pf05304.yaml" } ], "pfam_ids": [ "PF05304" ], "protein_name": "16 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTCVLKGCVNEVTVLGHETCSIGHANKLRKQVADMVGVTRRCAENNCGWFVCVIINDFTFDVYNCCGRSHLEKCRKRFEARNREIWKQVERIRGEKASATVKKSHKSKPSKKKFKERKDFGTPKRFLRDDVPLGIDQLFVF", "sequence_length": 141, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7bce3f9885c91a72369d6ab76aa855d85a903662cdbf2abe939e6ddae783e61b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P05076.json", "taxon_id": "12299", "uniprot_accession": "P05076", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Tobacco rattle virus (isolate PpK20)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf728-pf05304.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05304", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf728-pf05304.yaml" } ], "pfam_ids": [ "PF05304" ], "protein_name": "Suppressor of RNA silencing", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTCVLKGCVNEVTVLGHETCSIGHANKLRKQVADMVGVTRRCAENNCGWFVCVVINDFTFDVYNCCGRSHLEKCRKRVETRNREIWKQIRRNQAENMSATAKKSHNSKTSKKKFKEDREFGTPKRFLRDDVPFGIDRLFAF", "sequence_length": 141, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bb9524b5aa5216032f8bc907b1da052ed63e888f6c53926f29e4f3b9fa7074fe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q77JX3.json", "taxon_id": "652939", "uniprot_accession": "Q77JX3", "uniprot_release": "2026_03" } ], "pfam_id": "PF05304", "short_name": "DUF728", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf732-pf05305.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05305", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf732-pf05305.yaml" } ], "pfam_ids": [ "PF05305" ], "protein_name": "Uncharacterized protein Rv3067", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRDEPPTDTAAAPTTGAAPEIDTAREYEVTAEYQSWRVVWGSAAALLTVGVGIGAAILLGWFTLAHRHPDQPGAAATPPPAGLTTRSAPTAAPPSTLQSPDLDSVFLGNLHDRGISFTNPDAAVYNGKMVCTNLGGGMTVQQVVEALQSSSPALGDRTTAYVAVSIRTYCPKYDAVLPPGS", "sequence_length": 181, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d87eef3358ccfbc80600f114e676f6e6783405e3a29d73c1ba86fd093da90bb7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/I6YB21.json", "taxon_id": "83332", "uniprot_accession": "I6YB21", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf732-pf05305.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05305", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf732-pf05305.yaml" } ], "pfam_ids": [ "PF05305" ], "protein_name": "Putative lipoprotein LprJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAHTHDGTRTWRTGRQATTLLALLAGVFGGAASCAAPIQADMMGNAFLTALTNAGIAYDQPATTVALGRSVCPMVVAPGGTFESITSRMAEINGMSRDMASTFTIVAIGTYCPAVIAPLMPNRLQA", "sequence_length": 127, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95706d80775b5c6ece1539dc0c8c557625ca0b5d85d85ed0d3e443f77cee062a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O33192.json", "taxon_id": "83332", "uniprot_accession": "O33192", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf732-pf05305.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05305", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf732-pf05305.yaml" } ], "pfam_ids": [ "PF05305" ], "protein_name": "Uncharacterized protein Rv0559c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKGTKLAVVVGMTVAAVSLAAPAQADDYDAPFNNTIHRFGIYGPQDYNAWLAKISCERLSRGVDGDAYKSATFLQRNLPRGTTQGQAFQFLGAAIDHYCPEHVGVLQRAGTR", "sequence_length": 112, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aef0df9d0b142e5a7ae524c1b5c8a35681c717f34d78bf50b0dc7bffdd00be8e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKL3.json", "taxon_id": "83332", "uniprot_accession": "P9WKL3", "uniprot_release": "2026_03" } ], "pfam_id": "PF05305", "short_name": "DUF732", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05306", "short_name": "DUF733", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mito-fiss-reg-pf05308.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05308", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mito-fiss-reg-pf05308.yaml" } ], "pfam_ids": [ "PF05308" ], "protein_name": "Mitochondrial fission regulator 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLGWIKRLIRMVFQQVGVSMQSVLWSRKPYGSSRSIVRKIGTNLSLIQCPRVQFQINSHATEWSPSHPGEDAVASFADVGWVAKEEGECSARLRTEVRSRPPLQDDLLFFEKAPSRQISLPDLSQEEPQLKTPALANEEALQKICALENELAALRAQIAKIVTQQEQQNLTAGDLDSTTFGTIPPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMPNMLEILKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAYRYRSDSQDEVEKGIPKSESEATSERVLFGPHMLKPTGKMKALIENVSDS", "sequence_length": 333, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7cdbcb3d178c0d06d1e55a44e06548216eba4a0fb945f78f2ecd8027606eedda", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q15390.json", "taxon_id": "9606", "uniprot_accession": "Q15390", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mito-fiss-reg-pf05308.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05308", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mito-fiss-reg-pf05308.yaml" } ], "pfam_ids": [ "PF05308" ], "protein_name": "Mitochondrial fission regulator 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLILNILREMLEYFGVPVEQVLLIWENKDYGSTRSIVRIIGKMLPLEPCRRPNFELIPLLNSVDSDNCGSMVPSFADILYVANDEEASYLRFRNSIWKNEEEKVEIFHPLRLVRDPLSPAVRQKETVKNDLPVNEAAIRKIAALENELTFLRSQIAAIVEMQELKNSTNSSSFGLSDERISLGQLSSSRAAHLSVDPDQLPGSVLSPPPPPPLPPQFSSLQPPCFPPVQPGSNNICDSDNPATEMSKQNPAANKTNYSHHSKSQRNKDIPNMLDVLKDMNKVKLRAIERSPGGRPIHKRKRQNSHWDPVSLISHALKQKFAFQEDDSFEKENRSWESSPFSSPETSRFGHHISQSEGQRTKEEMVNTKAVDQGISNTSLLNSRI", "sequence_length": 385, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d340f88751b5fb189d07829d808993e0bfe673be810c6da2875c6568e391a551", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P444.json", "taxon_id": "9606", "uniprot_accession": "Q6P444", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mito-fiss-reg-pf05308.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05308", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mito-fiss-reg-pf05308.yaml" } ], "pfam_ids": [ "PF05308" ], "protein_name": "Mitochondrial fission regulator 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPRDGTNEQRFLELPSPMSFILNILRNVLEYFGVPVDQDLLICQNKNCGSARSIVRIIGRRLPLKPCRRPHFELIPHVNSTESDDYELRVPSFADVLCVANDEEASCLRFRHSLWQKKEERKIAPFYPSKLTWDPSSPGLRQNKTETDDLPVNEAAIKKIAALEDELTFLRSQIAAIVAMQDLRESRETGFIDLSDEQVPPSSATTGLSVEPDHAPSVVLPPPPPPPPPPQFSLQPPSSLPMQPGSANTHDIDSLATEMERQLSGVKKTDDSHHSKSQRLRDVPNMLDVLKDVNKVRLRPVERSPGGRPVQKRKRRSSEWDPVSLISNALKQKFAFQDDSFDRENSSWECSPFSSPETSRF", "sequence_length": 361, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "771dc2963099c2f26f342244d366f2d7763fa35457582f6ea7b30af629c28bbb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VED8.json", "taxon_id": "10090", "uniprot_accession": "Q8VED8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mito-fiss-reg-pf05308.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05308", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mito-fiss-reg-pf05308.yaml" } ], "pfam_ids": [ "PF05308" ], "protein_name": "Mitochondrial fission regulator 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLGWIKCLMRMWFQRVGVSMQSVLWSGKPYGSSRSIVRKIGTNLSLIQCPRVQFQLTSHATEWSPAHSGEDAVASFADVGLVATEEGECSIRLRAEVSSKPPHEDDPPCFEKPPSRHTSFPSLSQDKPSPERTLASEEALQKISALENELAALRAQIAKIVTLQEQQSPSAGCLDSSTSVTVAPPPPPPPPPPPLPLVLHQSTSALDLIKERREQRLSAGKTLATGHPKKPDMPNMLEILKDMNSVKLRSVKRSEKDVKPRPADTDHAAFIAEALKKKFAYRHNSQGETERGIPKPESEATSEPALFGPHILKSTGKMKALIENVPDS", "sequence_length": 328, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "98b8f41fa33651c316d85fb5653f37d7892d7885c5655eecb732bc330f7dae8b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q99MB2.json", "taxon_id": "10090", "uniprot_accession": "Q99MB2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mito-fiss-reg-pf05308.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05308", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mito-fiss-reg-pf05308.yaml" } ], "pfam_ids": [ "PF05308" ], "protein_name": "Mitochondrial fission regulator 1-like", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEANVTIPIWQNKPHGAARSVVRRIGTNLPLKPCPRASFETLPNISDLCLKDVPPVPTLADIAWIAADEEETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKPALPALSRTTELQDELSHLRSQIAKIVAADAASASLTPDFFSSGSSNVSSPLPCFGSSLHSTTSFVISDITEETEVEVPELPTVPLLCSASPECCKPEHKTTCSSSEEDDCISLSKASSFADMMGILKDFHRIKQSQDLSRSLLKEEDPAVLISEVLRRKFALKEEDISRKGN", "sequence_length": 289, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b6385aa144eaa1d9fbea76ffab9a25342b5b0d4c1a01b4419f34aa62c442d7ff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CWE0.json", "taxon_id": "10090", "uniprot_accession": "Q9CWE0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mito-fiss-reg-pf05308.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05308", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mito-fiss-reg-pf05308.yaml" } ], "pfam_ids": [ "PF05308" ], "protein_name": "Mitochondrial fission regulator 1-like", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGMEATVTIPIWQNKPHGAARSVVRRIGTNLPLKPCARASFETLPNISDLCLRDVPPVPTLADIAWIAADEEETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKPALPALSRTTELQDELSHLRSQIAKIVAADAASASLTPDFLSPGSSNVSSPLPCFGSSFHSTTSFVISDITEETEVEVPELPSVPLLCSASPECCKPEHKAACSSSEEDDCVSLSKASSFADMMGILKDFHRMKQSQDLNRSLLKEEDPAVLISEVLRRKFALKEEDISRKGN", "sequence_length": 292, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f59dbebf96e41115b7f519edf13da423a6cf7d5412d4a7c6896afc4bc2db8a67", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H019.json", "taxon_id": "9606", "uniprot_accession": "Q9H019", "uniprot_release": "2026_03" } ], "pfam_id": "PF05308", "short_name": "Mito_fiss_reg", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05325", "short_name": "DUF730", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05331", "short_name": "DUF742", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05332", "short_name": "Vesi_VP2", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { 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"MSDDAGDTLATGDKAEVTEMPNSDSLPEDAEVHCDSAAVSHEPTPADPRGEGHENAAVQGAGAAAIGPPVQPQDANALEPPLNGDVTEDTLAECIDSVSLEAEPRSEIPLQEQNYLAVDSPPSGGGWAGWGSWGKSLLSSASATVGHGLTAVKEKAGATLRIHGVNSGSSEGAQPNTENGVPEITDAATDQGPAESPPTSPSSASRGMLSAITNVVQNTGKSVLTGGLDALEFIGKKTMNVLAESDPGFKRTKTLMERTVSLSQMLREAKEKEKQRLAQQLTMERTAHYGMLFDEYQGLSHLEALEILSNESESKVQSFLASLDGEKLELLKNDLISIKDIFAAKELENEENQEEQGLEEKGEEFARMLTELLFELHVAATPDKLNKAMKRAHDWVEEDQTVVSVDVAKVSEEETKKEEKEEKSQDPQEDKKEEKKTKTIEEVYMSSIESLAEVTARCIEQLHKVAELILHGQEEEKPAQDQAKVLIKLTTAMCNEVASLSKKFTNSLTTVGSNKKAEVLNPMISSVLLEGCNSTTYIQDAFQLLLPVLQVSHIQTSCLKAQP", "sequence_length": 563, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "80f2a5c5a8267caa7048a598d302be215ca2efef32e902c55f1da00b15424c63", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IWE2.json", "taxon_id": "9606", "uniprot_accession": "Q8IWE2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf719-pf05334.yaml" } ], "pfam_ids": [ "PF05334" ], "protein_name": "Protein Noxp20", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDDARDTIANGVGEDAAEMPNSDSPAEDAAEVQCGPATTSNEPAPDDHMEEQPEITAMCAESTPPGILDQSKASAADETPLNGEVTEDTLVECVDSVSLEGDTGSEIPLKEQDDAAVDPSSQAGRWAGWGSWGKSLLSSASATVGHGLTAVKEKAGATLRIHSANSASPEGAPTDAENGISGNVTPDQDPARGPHTPPPPGAAGSRGMLSALTNVVQNTGKSVLTGGLDALEFIGKKTMIVLAESDPGFKRTKTLMERTVSLSQMLREAKEKEKQRLAQQLTVERTAHYGMLFDEYQGLSHLEALEILSNESESKVQSFLTSLDGEKLELLKNDLISIKDIFVAKESENEANPEEQGLEESGEEFARMLTELLFELHVAATPDKLNKAMKKAHDWVEEDQSVVSIDVAKGSEEEEKEEGKEEKAEEPEEDKTGGQGAKTVEEVYMLSIESLAEVTARCIEQLHKVAELILHGQEEEKPAQDQARVLIKLTTAMCNEVTSLSKKFTNSLTTVGSNKKAEVLNPMINSVFLEGSNSTTYVQDALQLLLPVLQVSHIRTSCLKATAQPDCS", "sequence_length": 569, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "57fc29d09904d7e0f487ca4a6724ca2a9d9a9c9017729ca65ec43d9c5777c466", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D281.json", "taxon_id": "10090", "uniprot_accession": "Q9D281", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/purine-nucleotide-binding-go0017076.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0017076", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/purine-nucleotide-binding-go0017076.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "2af0ead2d287dbf3842483919b8bc96c28b9d1171b2c440f25b50cd4d82e3d26", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"Pfam:PF05346", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf747-pf05346.yaml" } ], "pfam_ids": [ "PF05346" ], "protein_name": "Transmembrane anterior posterior transformation protein 1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADSVAAGLGDENETENEDKEREKRLFSGVKKMEKQAAASDVTETLGFYERKAKCKDRKTNVSDLSLVRFISAELTRGYFLEHNEAKYTERRERVYTCLRIPKELEKLMIFGYFLCLDVFLYVFTLLPLRVLLALVRLLTLPCCGLSGSRILQPAQVCDVLKGFIMVLCYFMMHYVDYSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKERKRAHIGVIPHFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLFQMSNSDIKERFTNYTLLLIVCLRNMEQFSWNPDHLWVLFPDVCMVIASEIAVDVVKHAFITKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVSRRMGFIPLPLALLLIRVVTSSVKIQGSLSIVCVLLFYLGMITLKVLNSIVLLGKSCMYVKEANMEEKLFQNPPSAAPSRVSSRAHRTKHTREPPGDPAEEGMSASVTTQPTQQDECPAPQIPTSESDQFLTTPDESEEKSLIQDDSELKHRAPKKDLLEIDRFTICGNRID", "sequence_length": 567, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "97bb3fb1a7ab9d6e2bf90a415ad6c30d213a4b75ab4aee89851b0eeac91e7beb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2BIE7.json", "taxon_id": "7955", "uniprot_accession": "A2BIE7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf747-pf05346.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05346", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf747-pf05346.yaml" } ], "pfam_ids": [ "PF05346" ], "protein_name": "Protein POLLEN DEFECTIVE IN GUIDANCE 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIRSSGRKLSFEILSQNSSFENDDTSIRRSSSDPITGNVASESPRDYGKRKRSKKKKKKVNQVETILENGDSHSTIITGSSGDFGETTTMFENRLNYYGGGGSGSSGGGCVVTLLDGQTVHHNGFNFGELRQRNVNGSVDGSNDERWSDTLSSDKKLYMEETSVELSPSENPPFQEVQHQFPRSEINGNVVRRLDTEASLDWKQLVADDPDFLSAETRSPMKYFMEEIYGGISLRSTTTPGNDIERERIYDTIFRLPWRCEVLIDTGFFVCVNSFLSLLTVMPIRVLLIFMDAFKNRQFRRPSASELSDLACFLVLATGTILLGRTDISLIYHMIRGQSTIKLYVVYNILEIFDRLCQSFCGDVFGALFSSAKGLSISPPEKLRFSTWRFVSDLALTMAASILHSFILLAQAITLSTCIVAHNNALLALLVSNNFAEIKSSVFKRFSKDNIHGLVYADSIERFHISAFLVSVLAQNILESEGAWFGNFIYNATTVFFCEMMIDIIKHSFLAKFNDIKPIAYSEFLQALCEQTLNIRPEDRKTNLTFVPLAPACVVIRVLTPVYAAHLPYSPLPWRMLWMVILFVITYIMLTSLKVLIGMGLRKHATWYINRCRRRNSSHLHND", "sequence_length": 624, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5dca8ba0dbb493798c331564e71cbc63c9a2b7a0e7087f684bfd34391ec6ca77", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4HVJ3.json", "taxon_id": "3702", "uniprot_accession": "F4HVJ3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-bone-development-go1903012.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1903012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-bone-development-go1903012.yaml" } ], "pfam_ids": [ "PF05346" ], "protein_name": "Transmembrane anterior posterior transformation protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGVCDAAAPGEGGGGGADGPERTGRGEAEQPGGGGHGPAPQHTETLGFYESDRRREKRRGRAELSLLRFLSAELTRGYFLEHNEAKYTERRERVYTCMRIPRELEKLMFFGIFLCLDAFLYVFTLLPLRVFLALFRLLTLPCYGLRDRRLLQPAQVCDILKGVILVICYFMMHYVDYSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKERKRAHIGVIPHFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLFQMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLWVLFPDVCMVIASEIAVDIVKHAFITKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVARRMGFIPLPLAVLLIRVVTSSIKVQGILSYACVILFYFGLISLKILNSIVLLGKSCQYVKEAKMEEKLFNPPPASTPGKPSSKSQSKGKPSQGLSTEENLSASVTSQPGHQKENVIPLLVTSNSDQFLTTPDGDEKDITQENSELKHRSSKKDLLEIDRFTICGNRID", "sequence_length": 564, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3849e63b2aa8034a3a38b3b228d9c730a03dc20964d719d9e88842f21ebd2648", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q4VBD2.json", "taxon_id": "10090", "uniprot_accession": "Q4VBD2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/growth-hormone-releasing-hormone-receptor-activity-go0016520.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016520", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/growth-hormone-releasing-hormone-receptor-activity-go0016520.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-bone-development-go1903012.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1903012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-bone-development-go1903012.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf747-pf05346.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05346", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf747-pf05346.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q6NXT6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05346" ], "protein_name": "Transmembrane anterior posterior transformation protein 1 homolog", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b3193764a4a6ca1bd62dcaf756a3bc0bfebf4c090d5f3cb8118b86741fbd8695", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAGVGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTETLGFYESDRRRERRRGRTELSLLRFLSAELTRGYFLEHNEAKYTERRERVYTCLRIPRELEKLMVFGIFLCLDAFLYVFTLLPLRVFLALFRLLTLPCYGLRDRRLLQPAQVCDILKGVILVICYFMMHYVDYSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKERKRAHIGVIPHFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLFQMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLWVLFPDVCMVIASEIAVDIVKHAFITKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVARRMGFIPLPLAVLLIRVVTSSIKVQGILSYACVILFYFGLISLKVLNSIVLLGKSCQYVKEAKMEEKLSNPPATCTPGKPSSKSQNKCKPSQGLSTEENLSASITKQPIHQKENIIPLLVTSNSDQFLTTPDGDEKDITQDNSELKHRSSKKDLLEIDRFTICGNRID", "sequence_length": 567, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b3193764a4a6ca1bd62dcaf756a3bc0bfebf4c090d5f3cb8118b86741fbd8695", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NXT6.json", "taxon_id": "9606", "uniprot_accession": "Q6NXT6", "uniprot_release": "2026_03" } ], "pfam_id": "PF05346", "short_name": "DUF747", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf748-pf05359.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05359", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf748-pf05359.yaml" } ], "pfam_ids": [ "PF05359" ], "protein_name": "Putative phospholipid transport protein EpaF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKGLKRAVSALLITFLVYCLLGFLLIPGIGLRVANQQLAQYATVPARLERIEFNPFSLELTLWGLRLGEEKNPQLAFRRLYANLQLDSLWKRQLHLADVELEGPHTELLFGEKGQLNLASLFRIPPSESPEPEQPSDPFPLRIDRIQLAEGSLHFQDLRPSEPVDFSFDPLGFELHNLSTLPDDGAKMTLVATGPNGGRLDWEGDLTLVPITSRGHLSVKDIQLKAWWPYVRDNAPLVLENGVVSLSSDYRLDLSKDTQLLLDKAALKLADFSINSPQGKPLAKLASLDVAATTLDLAKQEVVLGEVRSQGLEAWAAREKDGQLDWQKLFADFTPPPRKAPAPKPAENTDPAAAPTDAAKTTSEPATDGAAKAAAIASGEASKDRPAEKDASVAETERATDDKESAKAAEGAADKVAKQETSKAPKTGKATGQETAKTAEIDKAASDSPQQLADTAKTPPPESTKASAETPAKPWNIVLRDAQLRGYKAHLVDRQPATEVPLEVGPLDLDLQNVDSLGKTPFDLKLKTGLGNRGQVQASGQVVLDPVSARLKVSTRDIDLRVAQAYISPFIRLELRSGFLGSELAVDLKSVEPLAFSVDGSAEVSQLHTLDTIKDRDFVKWTKLTLNGLAYRHEDSLSIQSVSFEEPYARFIINEDRSTNVSELIIPQPASSSGKTAAESKNAPASKPLGIHIGGVRINNGSANFADLTLMPPFGTAIQQLSGEVGTLDTRNSQPAKVDIKGKVDKYAPVTIAGELDPFDPLKKLDITTSFKRVELTTLTPYSGKFAGYRIRKGRLNLDLHYQIERSQLKAENKVLLEGLQLGEKVDSPDAVDLPVKLAVALLKDTKGNIDIQLPVAGDLNNPEFSVMPIVWQTLRNLVLRAVQAPFKFIAGLAAGGNEDLGTVPFAAGSDELTPEAQANLDKLADALKERPALRLEVEGVASAAADGPSIGAKRLELEYQNTYYRMLQRRGDKVPSDAKQLEVPENMQAPLLEGIYRTRLKQQPPAEWKELDSDERTAKMREAVIASWAKSQVLLRQIGQARATRIKDYLVEKGQLPDDRIYLIDVSFAEGEDKGNVDTQLHLDSE", "sequence_length": 1088, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6a298a37241e9251e1d5762b473c18833ac61882ce5e1342c4e4b278041abb0c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HV64.json", "taxon_id": "208964", "uniprot_accession": "Q9HV64", "uniprot_release": "2026_03" } ], "pfam_id": "PF05359", "short_name": "DUF748", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf749-pf05370.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05370", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf749-pf05370.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/hypothetical-protein-mth1880-ipr035933.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/hypothetical-protein-mth1880-ipr035933.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/hypothetical-protein-mth1880-3-30-160-120.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.160.120", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/hypothetical-protein-mth1880-3-30-160-120.yaml" } ], "pfam_ids": [ "PF05370" ], "protein_name": "Uncharacterized protein MJ0858", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNDKNVEFVATLISILTVKEALNSEMENFVKVRAAIDKRELKDDDKVAIFNINSTTSYQVFFIDKDTNIEELKEEFKKMNVRINYDSEQVLKRYIERLRIQNNSKPISNNNKQ", "sequence_length": 113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c325646503e59503a2653ca326e10426738b5f12d2b6d0006c422c921378b03e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58268.json", "taxon_id": "243232", "uniprot_accession": "Q58268", "uniprot_release": "2026_03" } ], "pfam_id": "PF05370", "short_name": "DUF749", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Apple stem grooving virus (strain P-209)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1717-pf05414.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05414", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1717-pf05414.yaml" } ], "pfam_ids": [ "PF00978", "PF01443", "PF01660", "PF05414", "PF05892" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFKSVAFFSLRENKVDSFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRNKFPKVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDRGRACNEFNHFDKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAKLRQLEKRDLYPDELNFVYSFGEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHFIAASFFEPTEFHLNMRKLLNDLATKGIEVPLSVIILDKVNFIETRFHARMFDIAQAIGVNLDLLGKRFDYEAESEEYFSENGYIFMPSKSNPERNWILNSGSLKIDYSRLVRARRFRLRRDFLDPISKGKSPRKQLFLESTGNIKSNPNAEKNSESGEIKIEGSAENDQPHEVSHTSMETEDGQGFEGSIPVDLINCFEPEEIKLPKRRRKNDCVFKAISAHLGIDSQDLLNFLVNEDISDELLDCIEEDKGLSHEMIEEVLITKGLSMVYTSDFKEMAVLNRKYGVNGKMYCTIKGNHCELSSKECFIRLLKEGGEAQMSNENLNADSLFDLGRFVHNRDRAVKLAKSMARGTTGLLNEFDLEFCKNMVTLSELFPENFSSVVGLRLGFAGSGKTHKVLQWINYTPSVKRMFISPRRMLADEVEPQLKGTACQVHTWETALKKIDGTFMEVFVDEIGLYPPGYLTLLQMCAFRKIVKGQSENFLKGKLLELSKTCLNIRCFGDPLQLRYYSAEDTNLLDKTHDIDLMIKTIKHKYLFQGYRFGQWFQELVNMPTRVDESKFSRKFFADISSVKTEDYGLILVAKREDKGVFAGRVPVATVSESQGMTISKRVLICLDQNLFAGGANAAIVAITRSKVGFDFILKGNSLKEVQRMAQKTIWQFIIEGKSIPMERIVNMNPGASFYESPLDVGNSSIQDKASNDLFIMPFINLAEEEVDPEEVVGDVIQPVEWFKCHVPVFDTDPTLAEIFDKVAAKEKREFQSVLGLSNQFLDMEKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQGKELLQEFISMLPFEFKVNIKEIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVRNSKLLTGLSKSLIFEIGEGIGSKWLSSTSTASSRRSNLQTSKLMLSRPQSFTRMQPFSNQTCLIASKGLNQTSRFPLDLVTASSCLISNCLMTPKLIQSGRKATSTNTYTMESSWLGSKQCCQTLEAWKGESLYMMEPAWIRKEATFARIFSSLSLTVATLVSGQSTVCLPQTQIWPKGLDFVWTLIVHNMNRTLSCLLLTLELHTDASTLQGFWKPKLAIQDGLHRQSAAVKHLNSMRKSRWPSWIADPRCFWKKVHQTCTLKRDCSEVTRLEGHAQFPLKGGQTQGCKKREDLGPSRLELKDLEKMSLEDVLQQARRHRVGVYLWKTHIDPAKELLTVPPPEGFKEGESFEGKELYLLLCNHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHYNLTTTPKEGETDEGRKARAGSSGEKTKIWRIDLSNVVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESNLELEG", "sequence_length": 2105, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d2fc0bbc5e13519dc93814294806c948d2c9f4104b8efccfa479cf95bea4c0c7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P36309.json", "taxon_id": "36402", "uniprot_accession": "P36309", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Apple stem grooving virus (strain Korea)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1717-pf05414.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05414", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1717-pf05414.yaml" } ], "pfam_ids": [ "PF00978", "PF01443", "PF01660", "PF05414", "PF05892" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFTYRNPLEIAINKLPSKQTDQLLSLTTDEIEKTLEVTNRFFSFSITPEDQELLTKHGLTLAPIGFKAHSHPVSKMIENHLLYICVPSLLSSFKSVAFFSLRESKANSFLKMHSAFSHGKIKSMGMYNAIIDGKDKYRYGDVSFTSFRERVIGLRDQCLTRNKFPKIIFMHDELHFLSPFDIAYLFETIPEIDRVIATTVFPIELLFGDKVSKEPRVYTYKVHGSSFSFYPDGVASECYEQNLANSKWPFTCNGIQWANRRVRVTKLQSLFAHHVFSFDRGRACNDFNHFNKPGCLLSEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAKLRQLEKRDLYPDELNFVYSFGEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHFISASFFEPTEFHLNMRKLLNDLATKGIEVPLPTIVLDKVNFIETRFHARMFEVASAIGVNLDLLGKRFDFENESEEYFSENGYLFMPSKHNTDRNWILNSCPVRVDYSKLVRARRFRLKRDFVEEILKKRPPRTQLFLEFNKDFGGPVSFEKEEVEKKGEAATRVEDKAPHEPSCSNLSTEDGQGFEGSLPLDLISCFEQEEIRLPKRKRKNDCVFKAIAAHLGIETQDLLNFLVNEDISDELLDCIEEDKGLSHEMIEEVLVTKGLSMVYTSDFKEMAVLNRKYGVNGKMYCTIKGNHCELSSKECFIRLLKEGGNAQMSNENLNADSMFDLGKFVHNKERAVKLAKSMARGTTGLLNSFDPNFCKEVVGLSELFPDNFSSVVGLRLGFAGSGKTHKVLQWINYTPNVKRMFISPRRMLAEEVEGRLKGTACQVHTWETALRKIDGTFMEVFVDEIGLYPPGYLTLLQMCAFRRTVKGQSERFLKSKLAELSKTCLSLRCFGDPLQMRYYSAEDTNLLDKTHELDLMIKTIKHKYLLQGYRFGEWFQSLINMPTRIDSSEISIKFFADMSSVKSEDYGLVLVARREDIGVFAGRIPVATVSESQGMTIDKRVLICLDQNLFAGGANAAIVAITRSRVGFDFVLKGNTLKEIQRMSQKTIWQFILEKKRIPMERIVNMNPGASFYESPLDVGNSSIQDKASHDVFIMPFINLAEEEVDPEEICGDVIKPVEWFKCHVPVFDTDPMLAEIFDKVAAKEKREFQSILGMSNQFLDMEKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQKRIRKSNWRREKTKFEEFEIQGRELLSEFLSMLPCEFKVNIKDIEEGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHVFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNAEVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRKHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVKNSKLLTGLSKSLIFEIGEGIGSEWQLSMSTTSSKRLNQQISRLMPSRHLNFIKMQPFSSQMFSIASNDLNQMSKCLKVRVMDSCCPTSSCLMTQKLTPLERRATSTNTYIMELFLLASKQCCPTSGEWKGGSLYMTVPVWTQKEVIYVPTYSDLSLTAVTLDSDQNIAYLQLMLIWQKGSGSEWILTVHNTNRTQSCLLLTLELHTGVSTQLDSWKPKQVIQDGLHRQSAAVKHLNTMKRSRWRSWITNHRCFWRKVHRMCILKKECSEGTRSGGRALSLPKGGQTQGQKKREDLGPSQRGLKDLGKMSLEDVLQLARRHRVGVYLWKTQIDPGKEILTVPPPESFKEGESFEGRELYLLLCNHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHYNLTTTPKEGETEEQKKAREGSSGEKSKIWRIDLSNVVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEKSPWVAFDFATGLKMNKLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESNLELEG", "sequence_length": 2105, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "afad8f98fe679a4a3f6fcce364210d26eec056c36eccb4327693b5017fee10bf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PLS1.json", "taxon_id": "273525", "uniprot_accession": "Q6PLS1", "uniprot_release": "2026_03" } ], "pfam_id": "PF05414", "short_name": "DUF1717", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Guillardia theta", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf751-pf05421.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05421", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf751-pf05421.yaml" } ], "pfam_ids": [ "PF05421" ], "protein_name": "Uncharacterized protein ycf33", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPTFWENLIRYPRFFISSTLGLVFIITGPLFNLLNKPKSALLFAIIVFGILSGLLITLLLMLDII", "sequence_length": 65, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8cc30665d95676b8e2ee487b05991459c0e988848ce65f7d593828dc4cde9b9f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O78517.json", "taxon_id": "55529", "uniprot_accession": "O78517", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cyanophora paradoxa", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf751-pf05421.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05421", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf751-pf05421.yaml" } ], "pfam_ids": [ "PF05421" ], "protein_name": "Uncharacterized protein ycf33", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNFFTNVLRYPLFLISFSLGIFLTFFRWIEPITKKPLNLIVLIISFGTVLMFLNLTFKAMLDLN", "sequence_length": 65, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e79bd42098337d3c5780edc764589b0035ca03b92d0d111d36efa29192dd3a35", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P48273.json", "taxon_id": "2762", "uniprot_accession": "P48273", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porphyra purpurea", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf751-pf05421.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05421", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf751-pf05421.yaml" } ], "pfam_ids": [ "PF05421" ], "protein_name": "Uncharacterized protein ycf33", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRFWNNVVKFPRFLVSVILGLILTIISPFFVLFRKPSTSFFFIISFTGLLVVLTAIIKKMLNIECC", "sequence_length": 67, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c01669992194dabf7474f61f3b5553cc587c544224b59b1ba951f7a44ac0372", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P51329.json", "taxon_id": "2787", "uniprot_accession": "P51329", "uniprot_release": "2026_03" } ], "pfam_id": "PF05421", "short_name": "DUF751", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/methyltransf-30-pf05430.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05430", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/methyltransf-30-pf05430.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P77182", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01266", "PF05430" ], "protein_name": "tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6a3f3fd77ba6ce1370648bd44557fa3dc03ba5ba1e9db89fe07fcd03a76893ff", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKHYSIQPANLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLGGNQLEVRFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAGFVRRGLQDAGFTMQKRKGFGRKREMLCGVMEQTLPLPCSAPWFNRTGSSKREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLPVKFDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNLSRKDDCWLLNFAGDQQATHSVVVLANGHQISRFSQTSTLPVYSVAGQVSHIPTTPELAELKQVLCYDGYLTPQNPANQHHCIGASYHRGSEDTAYSEDDQQQNRQRLIDCFPQAQWAKEVDVSDKEARCGVRCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVFDDLFMFAALGSRGLCSAPLCAEILAAQMSDEPIPMDASTLAALNPNRLWVRKLLKGKAVKAG", "sequence_length": 668, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6a3f3fd77ba6ce1370648bd44557fa3dc03ba5ba1e9db89fe07fcd03a76893ff", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P77182.json", "taxon_id": "83333", "uniprot_accession": "P77182", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/oxidoreductase-activity-acting-on-the-ch-nh-group-of-donors-go0016645.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016645", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/oxidoreductase-activity-acting-on-the-ch-nh-group-of-donors-go0016645.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mnmc-like-methyltransferase-ipr008471.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008471", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mnmc-like-methyltransferase-ipr008471.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/methyltransf-30-pf05430.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05430", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/methyltransf-30-pf05430.yaml" } ], "pfam_ids": [ "PF05430" ], "protein_name": "Uncharacterized protein MJ0670", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRVMLPNKKALEIIRKYMKIYNGKNEKDIKERLIKELKEEHVLVETEDGTYTLKAEDEEEMMHSKVGALKEAIYKFAKPSKITDLSNPRVLDLCSGMGYNAIAALHYNKNAEIDMVEICEEVLFLTLFLDIPYKEHEIIKDKVREYFLNKIGIEYKSDYDNINLYVGDARKFIIKSDKKYNVVFHDAFSPKRDPTLYTYDFLKEIYKRMEDNGVLISYSSAIPFRSALVDCGFVISEKESVGRKRGITLAYKNPNFKPNRINEVDERVIALSVIALPYRDETLSLTKDKIIEDREERREKLKEKLIKIGKYLSTKQIKKGNIPEEILKIQKEDLNSSEIIKKMRLKFFKDANIFIL", "sequence_length": 356, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7efd5cd1d55aa5ba1c8782eafb35e399ce64ef508ae6fb1e6e637262ebd2f9d1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58084.json", "taxon_id": "243232", "uniprot_accession": "Q58084", "uniprot_release": "2026_03" } ], "pfam_id": "PF05430", "short_name": "Methyltransf_30", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05444", "short_name": "DUF753", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05449", "short_name": "Phage_holin_3_7", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Torque teno midi virus 1 (isolate MD1-073)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf755-pf05501.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05501", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf755-pf05501.yaml" } ], "pfam_ids": [ "PF02957", "PF05501" ], "protein_name": "Uncharacterized ORF3 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQNLSAKDFYKPCRYNCETKNQMWMSGIADSHDSWCDCDTPFAHLLASIFPPGHTDRTRTIQEILTRDFRKTCLSGGADATNSGMAETIEEKREDFQKEEKEDFTEEQNIEDLLAAVADAEGRYQTNQLKTQETKTNMMCPIQSKKHYKLLTQQKTLLPRCSMTGTTDGVALHQQLLKECNKTSQLIHLSNLIQTQNQHPRKKDYYQSSTTHKRKRKRSTNVSSLSAKKVHARSRKRRKTSSSSSSSSSSSSRNSSTTS", "sequence_length": 259, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3723d75b3fd15cf8ea35778c27010aa953347d9fdb0b28439e56c571ad5510b7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4GZ95.json", "taxon_id": "766184", "uniprot_accession": "A4GZ95", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Torque teno virus (isolate Human/Japan/TRM1/1999)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf755-pf05501.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05501", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf755-pf05501.yaml" } ], "pfam_ids": [ "PF02957", "PF05501" ], "protein_name": "Probable protein VP2", 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"ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf755-pf05501.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05501", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf755-pf05501.yaml" } ], "pfam_ids": [ "PF02957", "PF05501" ], "protein_name": "Probable protein VP2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSWRPPAHNAEGQEGLWYRSVCQSHGAFCGCGDFVGHLNRLAERLGRPQPPRPPGGPPGPAIRVLPALPPAEGSPRRHNRTENQPCGGGDADFGDQRDAGDGGAAADDLSPADVEDLLDWLDAPDRLSKTPVNNPPLTSPVPVESLVQYKLSTRSTSTRASRSTDGTSDVASLGRQLLKECKQNQQMLSFLQQVQNAQEQRSPWPLQETPYLPGRENAKPGKTRPRKKPRAKQKPKKRRRYRSSSNSSSKSNDSSDAESSTCSSN", "sequence_length": 265, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c839fb4721d287bad73bf6826df3e2773c648d4ce1a15bb5e59efeec7a6b126e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q914N2.json", "taxon_id": "687345", "uniprot_accession": "Q914N2", "uniprot_release": "2026_03" } ], "pfam_id": "PF05501", "short_name": "DUF755", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05506", "short_name": "PLipase_C_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tnfaip8-pf05527.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tnfaip8-pf05527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/tumor-necrosis-factor-alpha-induced-protein-8-like-superfamily-ipr038355.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038355", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/tumor-necrosis-factor-alpha-induced-protein-8-like-superfamily-ipr038355.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/tumor-necrosis-factor-alpha-induced-protein-8-like-1-20-1440-160.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1440.160", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tumor-necrosis-factor-alpha-induced-protein-8-like-1-20-1440-160.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O95379", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05527" ], "protein_name": "Tumor necrosis factor alpha-induced protein 8", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0fabe86e19ac2eaa19f99687d6d7a73ca588d2ca15ab987fe319a1a97a06df17", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MHSEAEESKEVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTREYTQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDYTFDRNVLSRLLNECREMLHQIIQRHLTAKSHGRVNNVFDHFSDCEFLAALYNPFGNFKPHLQKLCDGINKMLDEENI", "sequence_length": 198, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0fabe86e19ac2eaa19f99687d6d7a73ca588d2ca15ab987fe319a1a97a06df17", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O95379.json", "taxon_id": "9606", "uniprot_accession": "O95379", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/1-phosphatidyl-1d-myo-inositol-4-5-bisphosphate-metabolic-process-go1902633.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1902633", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/1-phosphatidyl-1d-myo-inositol-4-5-bisphosphate-metabolic-process-go1902633.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tnfaip8-pf05527.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tnfaip8-pf05527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/tumor-necrosis-factor-alpha-induced-protein-8-like-superfamily-ipr038355.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038355", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/tumor-necrosis-factor-alpha-induced-protein-8-like-superfamily-ipr038355.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/tumor-necrosis-factor-alpha-induced-protein-8-like-1-20-1440-160.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1440.160", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tumor-necrosis-factor-alpha-induced-protein-8-like-1-20-1440-160.yaml" } ], "pfam_ids": [ "PF05527" ], "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSDSGEQSEGEPGTAAGPHVFSSKNLALQAQKKILSKIASKTVANMLIDDTSSEIFDELYKVTEIHTHNKKEAHKIMKDAIKVAIKIGILYRNKQFSQEEVIIVEKLRKKLNQTAMTMVSFYEVEYTFDTNVLSKLLHECKDLVHELVQRHLTPRTHGRINHVFNHFADVEFLSTLYGPHGNCRPNLKRICEGINKLLDDKIL", "sequence_length": 204, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c6cf39d72b8926bb656f89fc7c4ba2245e2aebc236e9f2fa74497f1483e5705a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3TBL6.json", "taxon_id": "10090", "uniprot_accession": "Q3TBL6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/1-phosphatidyl-1d-myo-inositol-4-5-bisphosphate-metabolic-process-go1902633.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1902633", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/1-phosphatidyl-1d-myo-inositol-4-5-bisphosphate-metabolic-process-go1902633.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tnfaip8-pf05527.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tnfaip8-pf05527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tumor-necrosis-factor-alpha-induced-protein-8-like-1-20-1440-160.yaml" } ], "pfam_ids": [ "PF05527" ], "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKPRQNPSTLVSTLCEAEPKGKLWVNGYAGTQGTRDATLQTRLIPLSFHLQRGKGLAAPLSALSAPRLPERPADGRVAVDAQPAARSMDSDSGEQSEGEPVTAAGPDVFSSKSLALQAQKKILSKIASKTVANMLIDDTSSEIFDELYKVTKEHTHNKKEAHKIMKDLIKVAIKIGILYRNNQFSQEELVIVEKFRKKLNQTAMTIVSFYEVEYTFDRNVLSNLLHECKDLVHELVQRHLTPRTHGRINHVFNHFADVEFLSTLYSLDGDCRPNLKRICEGINKLLDEKVL", "sequence_length": 292, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f8b7a3f46119bb550153276a22190f108971432fceb2f412258bb26814ed349e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5GJ75.json", "taxon_id": "9606", "uniprot_accession": "Q5GJ75", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tnfaip8-pf05527.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tnfaip8-pf05527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/tumor-necrosis-factor-alpha-induced-protein-8-like-superfamily-ipr038355.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038355", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/tumor-necrosis-factor-alpha-induced-protein-8-like-superfamily-ipr038355.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/tumor-necrosis-factor-alpha-induced-protein-8-like-1-20-1440-160.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1440.160", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tumor-necrosis-factor-alpha-induced-protein-8-like-1-20-1440-160.yaml" } ], "pfam_ids": [ "PF05527" ], "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESFSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELVEHHLTPKSHGRIRHVFDHFSDPGLLTALYGPDFTQHLGKICDGLRKLLDEGKL", "sequence_length": 184, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "43cb804932ca1bdf579bcffabae1879de7a56163799b52748a2e69e17919cafd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P589.json", "taxon_id": "9606", "uniprot_accession": "Q6P589", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tnfaip8-pf05527.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tnfaip8-pf05527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/tumor-necrosis-factor-alpha-induced-protein-8-like-superfamily-ipr038355.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038355", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/tumor-necrosis-factor-alpha-induced-protein-8-like-superfamily-ipr038355.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/tumor-necrosis-factor-alpha-induced-protein-8-like-1-20-1440-160.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1440.160", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tumor-necrosis-factor-alpha-induced-protein-8-like-1-20-1440-160.yaml" } ], "pfam_ids": [ "PF05527" ], "protein_name": "Protein salivary glands marred", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADNVFKSHDIGLRAQKKILSRMATKNIAKTFIDGTTASLLDNLYRLCKMHTGNKAKAEKLIKNIIKIVIKIGVLHRNNQFSDEELQKAELFKRKFQNTQLSIISFYEVDFTFDLPYLQKSIAESQVALKSIVQPHLTEKSLGRIDEVFDFFGEEALLETAFRPDSPYREVMGKIVADINAAMETGDI", "sequence_length": 188, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4ff1938d86d085d74fe4721dc604b3c1a3efe8e9b2eb91a9a14e46d1c1c8bdb8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q7KVH9.json", "taxon_id": "7227", "uniprot_accession": "Q7KVH9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tnfaip8-pf05527.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tnfaip8-pf05527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/tumor-necrosis-factor-alpha-induced-protein-8-like-superfamily-ipr038355.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038355", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/tumor-necrosis-factor-alpha-induced-protein-8-like-superfamily-ipr038355.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/tumor-necrosis-factor-alpha-induced-protein-8-like-1-20-1440-160.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1440.160", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tumor-necrosis-factor-alpha-induced-protein-8-like-1-20-1440-160.yaml" } ], "pfam_ids": [ "PF05527" ], "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTFSTKSLALQAQKKLLSKMASKAVVAVLVDDTSSEVLDELYRATREFTRSRKEAQKMLKNLVKVALKLGLLLRGDQLGGEELALLRRFRHRARCLAMTAVSFHQVDFTFDRRVLAAGLLECRDLLHQAVGPHLTAKSHGRINHVFGHLADCDFLAALYGPAEPYRSHLRRICEGLGRMLDEGSL", "sequence_length": 186, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2b11291fed769e80ed65567b5257184a1a856d7227540f6c7696cf41224e975a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WVP5.json", "taxon_id": "9606", "uniprot_accession": "Q8WVP5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tnfaip8-pf05527.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tnfaip8-pf05527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/tumor-necrosis-factor-alpha-induced-protein-8-like-superfamily-ipr038355.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038355", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/tumor-necrosis-factor-alpha-induced-protein-8-like-superfamily-ipr038355.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/tumor-necrosis-factor-alpha-induced-protein-8-like-1-20-1440-160.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1440.160", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tumor-necrosis-factor-alpha-induced-protein-8-like-1-20-1440-160.yaml" } ], "pfam_ids": [ "PF05527" ], "protein_name": "Tumor necrosis factor alpha-induced protein 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSEAEEPREVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAERVIKNLIKTVIKLAVLHRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVEYTFDRNVLSRLLNECRELLHEIIQRHLTAKSHGRVNNVFDHFSDCDFLAALYNPFGKFKPHLQKLCDGINKMLDEENI", "sequence_length": 198, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "47bf24645a0d17e8fcc414e74f3ea5397699b61c8a19a54b09955cdd2c4ca859", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q921Z5.json", "taxon_id": "10090", "uniprot_accession": "Q921Z5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tnfaip8-pf05527.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tnfaip8-pf05527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/tumor-necrosis-factor-alpha-induced-protein-8-like-superfamily-ipr038355.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038355", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/tumor-necrosis-factor-alpha-induced-protein-8-like-superfamily-ipr038355.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/tumor-necrosis-factor-alpha-induced-protein-8-like-1-20-1440-160.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1440.160", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tumor-necrosis-factor-alpha-induced-protein-8-like-1-20-1440-160.yaml" } ], "pfam_ids": [ "PF05527" ], "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESFSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPKAQRVIKDLIKVAVKVAVLHRSGCFGPGELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLVECRDILLELVEHHLTPKSHDRIRHVFDHYSDPDLLAALYGPDFTQHLGKICDGLRKLLDEGKL", "sequence_length": 184, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "11ab42fab94f3ebd7b58300afcd7061a898d1fb5996d044cba48166fe29e1b8e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D8Y7.json", "taxon_id": "10090", "uniprot_accession": "Q9D8Y7", "uniprot_release": "2026_03" } ], "pfam_id": "PF05527", "short_name": "TNFAIP8", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05537", "short_name": "DUF759", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf760-pf05542.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf760-pf05542.yaml" } ], "pfam_ids": [ "PF05542" ], "protein_name": "UV-B-induced protein At3g17800, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDALTSSLVRSPIVPSRTSDNGSGSMFLTASGPGFTRSGSSRLQLRLRQNASARSSRSLQSLTTTAKTRRSFVVRASSASNDASSGSSPKPIAPLQLQSPAGQFLSQILVSHPHLVPAAVEQQLEQLQTDRDSQGQNKDSASVPGTDIVLYRRIAELKENERRRTLEEILYALVVQKFMEANVSLVPSVSPSSDPSGRVDTWPTKVEKLERLHSPEMYEMIHNHLALILGSRMGDLNSVAQISKLRVGQVYAASVMYGYFLKRVDQRFQLEKTMKILPGGSDESKTSVEQAEGTATYQAAVSSHPEVGAFAGGVSAKGFGSEIKPSRLRSYVMSFDAETLQRYATIRSREAVGIIEKHTEALFGKPEIVITPEGTVDSSKDEQIKISFGGMKRLVLEAVTFGSFLWDVESHVDARYHFVLN", "sequence_length": 421, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d7a4264b75a2255fa1701c051e3b8b77efc9f2ced0cf9a9fb7bdc7bdc15797f3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LVJ0.json", "taxon_id": "3702", "uniprot_accession": "Q9LVJ0", "uniprot_release": "2026_03" } ], "pfam_id": "PF05542", "short_name": "DUF760", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05551", "short_name": "zf-His_Me_endon", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4408-ipr025520.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025520", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4408-ipr025520.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4408-pf14364.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14364", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4408-pf14364.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf761-pf05553.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05553", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf761-pf05553.yaml" } ], "pfam_ids": [ "PF05553", "PF14364" ], "protein_name": "Pathogen-associated molecular patterns-induced protein A70", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELLTTVASFFTPTTLFLLLNLMIGTIVVTSRLGSGSRKHYQHHDGFGSGHAPAPLARAPSIIDRVKSINFHLYKFPHPETELFSMTAHHDIIGSDLHVYPDPNPAPLQRAPSLLDRVKSINMSYFKFPHDVTGSDPHSHSHSHLDLHPDPAPAPLQRAPSLLDRVKSINMSYFKFQQYNPEENDYAHHTEPTRFESIPTRMGRVDPIDISKFRIPEEDQPTGTGVNSQINPPGLTRAPSILERVKSIKLSSFYRSDPDLDQKQNPDPVLHEEHKHVRSKSESKKPVKKKKKALTKMTKSASEKSGFGFAGSHAEAPETVESLERRRPDTTRVERSTSFGDGEDGVDAKASDFINKFKQQLKLQRLDSILRYKEMLKAH", "sequence_length": 379, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2c8ebe010705711397f7cedd6f01ce875399436e8dfccfce329f365dfe93f60b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4K956.json", "taxon_id": "3702", "uniprot_accession": "F4K956", "uniprot_release": "2026_03" } ], "pfam_id": "PF05553", "short_name": "DUF761", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05555", "short_name": "DUF762", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05559", "short_name": "DUF763", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05561", "short_name": "DUF764", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05570", "short_name": "DUF765", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/jamp-pf05571.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05571", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/jamp-pf05571.yaml" } ], "pfam_ids": [ "PF05571" ], "protein_name": "JNK1/MAPK8-associated membrane protein homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSLSGHASTIQPSCLGFCGRTVLVGNYSEDVEATTTAAGSTSLSRCGPCSFGYRNNAMSICESCDTPLQPYDWMYLLFIALLPLLLHMQFIRIARKYCRTRYYEVSEYLCVILENVIACVIAVLIYPPRFTFFLNGCSKTDIKEWYPACYNPRIGYTKTMRCTYEVVFPLYSITFIHHLILIGSILVLRSTLYCVLLYKTYNGKPFYAAIVSVPILAVIHAVLSGVVFYTFPYILLIGSLWAMCFHLALEGKRPLKEMIVRIATSPTHLIFLSITMLMLSFGVIAIIAPLDIPYRWSFLCIVPVPFIFYMATIPFSNPTTTMRLS", "sequence_length": 326, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b45d9785f82dd76e1173ff0ded5cb8bf6f91112434ecad432b9893629d0d4646", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G5EBX4.json", "taxon_id": "6239", "uniprot_accession": "G5EBX4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/jamp-pf05571.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05571", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/jamp-pf05571.yaml" } ], "pfam_ids": [ "PF05571" ], "protein_name": "JNK1/MAPK8-associated membrane protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVDIQPACLGLYCGKTLLFKNGSSEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECTMAAIITLLVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFVYYAFCLVLMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIVSISRVDRLEHDLPLLALVPTPALFYLFTAKFTEPSRILSEGANGH", "sequence_length": 311, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8c0acc41d938b3344d380821071cd34c5de709f44d7d1767a02343092a62c734", "sequence_version": 2, "source_url": 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"", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cdk5rap3-pf05600.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05600", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cdk5rap3-pf05600.yaml" } ], "pfam_ids": [ "PF05600" ], "protein_name": "CDK5 regulatory subunit-associated protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQDHQHVPIDIQTSKLLDWLVDRRHCNLKWQSLVLTIREKINTAIQDMPESQEIAQLLSGSYIHYFHCLRIVDLLKGTEASTKNIFGRYSSQRMKDWQEIISLYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQDYSRKEEEGQAGAAEMREQFYHSCKQYGITGDNVRRELLALVKDLPSQLAEIGAGAQSLGEAIDLYQACVEFVCDSPTEQVLPMLRYVQPKGNSTVYEWRTGTEPSVVERPQLEDPPEQVQEDEIDWGDFGLEAVSDSGNIISAETPGIDWGISLESESKDAGADKIDWGDNAVASEITVLETGTEAPEGVARGSDALTLLEYPETRNQFIDELMELEIFLSQRAVEMSEEADILSVSQFQLAPAILQGQTKEKMLSLVSTLQHLIGQLTSLDLQHLFMILASPRYVDRVTELLQQKLKQSQLLALKKDLMVEKQQEALQEQAALEPKLDLLLEKTRELQKLIEADISKRYNGRPVNLMGTSV", "sequence_length": 504, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "69bbae9e7f085dd34843766a782ce762edd732621b1b5e614009295ca97b9942", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JLH7.json", "taxon_id": "10116", "uniprot_accession": "Q9JLH7", "uniprot_release": "2026_03" } ], "pfam_id": "PF05600", "short_name": "CDK5RAP3", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hikeshi-like-c-terminal-domain-ipr048364.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048364", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hikeshi-like-c-terminal-domain-ipr048364.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hikeshi-like-n-terminal-domain-ipr008493.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008493", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hikeshi-like-n-terminal-domain-ipr008493.yaml" } ], "pfam_ids": [ "PF05603", "PF21057" ], "protein_name": "Protein OPI10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFAAIASGNPLQLSVEVPNSNGLQHTIVLSRTKPKLYSHITLFILPNVTFPQDYIATVYFKLSPQEEFKLFGYLSSEKPSAIFKVQIPSSKKDAGDTSDGLGEIDMDVDDGSGAADPFTDTNGSSSNNISELIIGISIEPREQGMMKLEEWKASMNAEAQKNNSLILSRPNLGIIRNITTAGQLAQVYPSLTQELAAKIVQHAYNYLSGFLDAQGNVPIKRFDTWWDKFRNRLANDGTFLDEVTKN", "sequence_length": 246, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "25ab368696dbd5ca90341d0501d942e059a9d0d4ed96bb66e65f80c76292bf50", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q08202.json", "taxon_id": "559292", "uniprot_accession": "Q08202", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hikeshi-like-c-terminal-domain-ipr048364.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048364", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hikeshi-like-c-terminal-domain-ipr048364.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hikeshi-like-n-terminal-domain-ipr008493.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008493", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hikeshi-like-n-terminal-domain-ipr008493.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hikeshi-like-c-pf21057.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hikeshi-like-c-pf21057.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hikeshi-like-n-pf05603.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05603", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hikeshi-like-n-pf05603.yaml" } ], "pfam_ids": [ "PF05603", "PF21057" ], "protein_name": "Protein Hikeshi", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYESINHVVVFMLGTIPFPEGMGGSVYFSYPDSNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDSMAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKWYENFQRRLAQNPLFWKT", "sequence_length": 197, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c09d32de528aa303e7f264e0bf37147d0ae1759cc38953ab685f110f45477483", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q53FT3.json", "taxon_id": "9606", "uniprot_accession": "Q53FT3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hikeshi-like-c-pf21057.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hikeshi-like-c-pf21057.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hikeshi-like-n-pf05603.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05603", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hikeshi-like-n-pf05603.yaml" } ], "pfam_ids": [ "PF05603", "PF21057" ], "protein_name": "Protein Hikeshi", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPDSNGVPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDSLAQQTPVGSAAVSSVDSFTQFTQKMLDNFYNFASSFALSQAQMTPNPSEMFIPANVVLKWYENFQRRLAQNPLFWKT", "sequence_length": 197, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ee70336154ce0431a7ab02de39a843009250579f6842ca6b0be1267f016c6c77", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5M808.json", "taxon_id": "10116", "uniprot_accession": "Q5M808", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hikeshi-like-c-terminal-domain-ipr048364.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048364", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hikeshi-like-c-terminal-domain-ipr048364.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hikeshi-like-n-terminal-domain-ipr008493.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008493", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hikeshi-like-n-terminal-domain-ipr008493.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hikeshi-like-c-pf21057.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hikeshi-like-c-pf21057.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hikeshi-like-n-pf05603.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05603", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hikeshi-like-n-pf05603.yaml" } ], "pfam_ids": [ "PF05603", "PF21057" ], "protein_name": "Protein Hikeshi", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPDSNGVPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDSLAQQTPVGSAAVSSVDSFTQFTQKMLDNFYNFASSFALSQAQMTPNPSEMFIPANVVLKWYENFQRRLAQNPLFWKT", "sequence_length": 197, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ee70336154ce0431a7ab02de39a843009250579f6842ca6b0be1267f016c6c77", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DD02.json", "taxon_id": "10090", "uniprot_accession": "Q9DD02", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hikeshi-like-c-terminal-domain-ipr048364.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048364", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hikeshi-like-c-terminal-domain-ipr048364.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hikeshi-like-n-terminal-domain-ipr008493.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008493", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hikeshi-like-n-terminal-domain-ipr008493.yaml" } ], "pfam_ids": [ "PF05603", "PF21057" ], "protein_name": "Protein OPI10 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLFGLIVSGRLPQSDFVAVDATKLLVNVPDIESVNYLVVFLTGVSPLPVGTSAAIYFSWPDANAAPTWQYLGHINNTKPSAIFKIAQLKKSHELEAQAHGMVFGSQEISHIAQIGVSLEPELTVAQQTPAVSTANDNKQFGQRMLENFFNYASSFGVAARDIPPISSETFVPFSVVQNWYTNFQRRMEQNPNFWKY", "sequence_length": 197, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0a029a9aaa4a5e20d994ece87d8eea01e9cf01895d28a914edff1c3d6985843e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9W0C7.json", "taxon_id": "7227", "uniprot_accession": "Q9W0C7", "uniprot_release": "2026_03" } ], "pfam_id": "PF05603", "short_name": "Hikeshi-like_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf776-pf05604.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05604", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf776-pf05604.yaml" } ], "pfam_ids": [ "PF05604" ], "protein_name": "Oxidative stress-responsive serine-rich protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGASVRASVRAAVEDAKPKSACASKDSWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIASSSSQLKHKSQTDSPDGSSGLGISTPKEFNAGECSSSLDTNHTGAVAEPLRTSVPRLPSESKEEDSSDAPQVSQASLQANDLSDFQSVSKLNLGKPCVCIGKECQCKRWHDMEVYSFSGLQNVPPLAPERRSTLEDYSQSLHTRTLSGSPRSCSEQARVYVDDVTIEDLSGYMEYYLYIPKKMSHMAEMMYT", "sequence_length": 291, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "84883489291217741747af6df636dac777dba262d90500ab0e52d40254530efb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5E9A0.json", "taxon_id": "9913", "uniprot_accession": "Q5E9A0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf776-pf05604.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05604", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf776-pf05604.yaml" } ], "pfam_ids": [ "PF05604" ], "protein_name": "Oxidative stress-responsive serine-rich protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSEAKDGEEESLQTAFKKLRVDASGSIVSLSVGEGTSVRASVRTTVDDTKPKTMCAPKDSWHGSTRKSSRGAVRIQRRRRSKSPVLHPPKFIHCSTTASPSSSQLKQRSQTEPLDGSSGRGISTPKEFSTGENSTSLDINHTGAAIEPLRSSVLRLPSESKTEELSDATQVSPESLTANDLSDFQSVSKLSQGKPCVCVGKACQCKRWHDMEVYSFSGLQNVPPLAPERRSLEDYSQSLHTRTLSGSPRSCSEQARVYVDDVTIEDLAGYMEYYLYIPKKMSHMAEMMYT", "sequence_length": 291, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1f8a411a6e63359b4499c6fa62df5985f360dd12a3170ddc3dc976c4e26188c6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q703I1.json", "taxon_id": "10116", "uniprot_accession": "Q703I1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf776-pf05604.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05604", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf776-pf05604.yaml" } ], "pfam_ids": [ "PF05604" ], "protein_name": "Oxidative stress-responsive serine-rich protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSEAKDGEEESLQTAFKKLRVDASGSVASLSVGEGTGVRAPVRTATDDTKPKTTCASKDSWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIASSSSSQLKHKSQTDSPDGSSGLGISSPKEFSAGESSTSLDANHTGAVVEPLRTSVPRLPSESKKEDSSDATQVPQASLKASDLSDFQSVSKLNQGKPCTCIGKECQCKRWHDMEVYSFSGLQSVPPLAPERRSTLEDYSQSLHARTLSGSPRSCSEQARVFVDDVTIEDLSGYMEYYLYIPKKMSHMAEMMYT", "sequence_length": 292, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dbf29941c4780ef60aa2e1eaa96524840d2af5664adeb0ae99075308e0f0f9d3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NX31.json", "taxon_id": "9606", "uniprot_accession": "Q9NX31", "uniprot_release": "2026_03" } ], "pfam_id": "PF05604", "short_name": "DUF776", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05606", "short_name": "DUF777", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rte1-pf05608.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05608", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rte1-pf05608.yaml" } ], "pfam_ids": [ "PF05608" ], "protein_name": "Protein REVERSION-TO-ETHYLENE SENSITIVITY1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRGRGVPMMDLKRSYDVEDRVVSVSIPSIIEADEADLWPLPEIDTKKSKFPCCIVWTPLPVVSWLAPFIGHIGLCREDGVILDFAGSNFINVDDFAFGPPARYLQLDRTKCCLPPNMGGHTCKYGFKHTDFGTARTWDNALSSSTRSFEHKTYNIFTCNCHSFVANCLNRLCYGGSMEWNMVNVAILLMIKGKWINGSSVVRSFLPCAVVTSLGVVLVGWPFLIGLSSFSLLLFAWFIIATYCFKNIIT", "sequence_length": 250, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "91f6da1cf04aa341046eddeba9152d132c22aed49df02654f4be77b0f2b9adee", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4ITL6.json", "taxon_id": "3702", "uniprot_accession": "F4ITL6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rte1-pf05608.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05608", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rte1-pf05608.yaml" } ], "pfam_ids": [ "PF05608" ], "protein_name": "Transmembrane protein 222", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEAEGSSPLLLQPPPPPPRMAEVETPTGAETDMKQYHGSGGVVMDVERSRFPYCVVWTPIPVLTWFFPIIGHMGICTSAGVIRDFAGPYFVSEDNMAFGKPAKFWKLDPGQVYASGPNAWDTAVHDASEEYKHRMHNLCCDNCHSHVALALNLMRYNNSTNWNMVTLCCFCLIYGKYVSVGAFVKTWLPFVLLLGIILTVSLVFNLR", "sequence_length": 208, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8452f1cf4bb7d2a5b0f0b8831249365b519684a40b6e4d01031cd35bd4ba4233", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BVA2.json", "taxon_id": "10090", "uniprot_accession": "Q8BVA2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rte1-pf05608.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05608", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rte1-pf05608.yaml" } ], "pfam_ids": [ "PF05608" ], "protein_name": "Transmembrane protein 222", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEAEGSSLLLLPPPPPPPRMAEVEAPTAAETDMKQYQGSGGVAMDVERSRFPYCVVWTPIPVLTWFFPIIGHMGICTSTGVIRDFAGPYFVSEDNMAFGKPAKYWKLDPAQVYASGPNAWDTAVHDASEEYKHRMHNLCCDNCHSHVALALNLMRYNNSTNWNMVTLCFFCLLYGKYVSVGAFVKTWLPFILLLGIILTVSLVFNLR", "sequence_length": 208, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea48bf0c30607237bcb28a2ad746479be0d4c078a38614ea09be0161194a55eb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H0R3.json", "taxon_id": "9606", "uniprot_accession": "Q9H0R3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-signaling-go0023056.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0023056", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-signaling-go0023056.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rte1-pf05608.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05608", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rte1-pf05608.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9SD42", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05608" ], "protein_name": "Protein RTE1-HOMOLOG", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "fb08499177d1cdd29b25f732e267602b0b95456f2010949c111f2ca1b593e6e4", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGETATDSEHRMMIGLSDPMKIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVILDFAGPNFVCVDNFAFGAVSRYIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPTWDDALRKSTQEYQHHSYNILTCNCHSFVANNLNRLSIKSGGWNVVNLATLVLFKGRWVNKTAIVKSLLPPLIVYTIGILLGGWTFIASCSILVVLLTGWFIIGTYCFKKLIQL", "sequence_length": 231, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "fb08499177d1cdd29b25f732e267602b0b95456f2010949c111f2ca1b593e6e4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SD42.json", "taxon_id": "3702", "uniprot_accession": "Q9SD42", "uniprot_release": "2026_03" } ], "pfam_id": "PF05608", "short_name": "RTE1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05610", "short_name": "DUF779", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05611", "short_name": "DUF780", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/leg1-pf05612.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05612", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/leg1-pf05612.yaml" } ], "pfam_ids": [ "PF05612" ], "protein_name": "Protein leg1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEMGFLRSVAAVLLLAVFSHAAVVTENGLPIQWGKAPSDLSHLPISDTGVQVNPWDYSQRMTMYKMLINATNAYMSSMGPGEQENPLWSLPLQLGWKLKSGRLADPTLDSSSTCGSEASDPVCISPLSWFACVNYYLSVLPFLAAVETGVVSSGGHQVLIQVPAEVAQDYCSSYSDCSTKHPNAMAKWHLFFQSLRQVSQSEDSDFNKKDSILGLMWAAEEESLQTASGACTERQKLYSSPEVSFQQSWLNSAAFVSAAHFHANIERSEKFMAPLPSRVLQEADSPPNIADLSTEENHTLYIFGWMNSVNQLLGGSLVNLWRKAMCSAQAREKGQALLHDLILDPKFPGSSLWSILSEMSTSC", "sequence_length": 364, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "082b85eb7ac163612c698858427c0919ea4195ee3ae683b4f409715772c30788", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5PF61.json", "taxon_id": "7955", "uniprot_accession": "A5PF61", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/leg1-pf05612.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05612", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/leg1-pf05612.yaml" } ], "pfam_ids": [ "PF05612" ], "protein_name": "Protein leg1b", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEMGFLRSVAAVLLLAVFSHAAVVTENGLPIQWRKAPSDLSHLPISNTGVQVNPWVYSQRMTMLKMVINATNAYMSSMGPGEQENPLWSLPLQLGWKLKSGRLADPTPDSSSTCGSEASDPVCISPLSFFGCVNYYLSVLPFLAAVETGVVSSGGHQMLIQVPAEVAQDYCSSYSDCSTKHPNTMAKWHLFFQSLRQVSQSKESDFNKKDSILGLMWAAEEESIQTASGACTERQKLYSSPEVSFQQSSVNLGAFISAAHYHASIERSGKFMSHLPSRVLQEADSPPNIADLSTEENHALYMLSWMNSINQLLGGSLVDLWRKAMCSAQAREKGQAFLDDLILDPKFPGSSLWSIICVMSTSC", "sequence_length": 364, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d4c4ac4e22e94d6c3c3fb1eda6d53ce3b13c8f4f5810f83bdc4c2b69bfb190e2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q4QRF7.json", "taxon_id": "7955", "uniprot_accession": "Q4QRF7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/leg1-pf05612.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05612", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/leg1-pf05612.yaml" } ], "pfam_ids": [ "PF05612" ], "protein_name": "Protein LEG1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFLPSWVCVLVGSFSASLAGTSNLSETEPPLWKESPGQLSDYRVENSMYIINPWVYLERMGMYKIILNQTARYFAKFAPDNEQNILWGLPLQYGWQYRTGRLADPTRRTNCGYESGDHMCISVDSWWADLNYFLSSLPFLAAVDSGVMGISSDQVRLLPPPKNERKFCYDVSSCRSSFPETMNKWNTFYQYLQSPFSKFDDLLKYLWAAHTSTLADNIKSFEDRYDYYSKAEAHFERSWVLAVDHLAAVLFPTTLIRSYKFQKGMPPRILLNTDVAPFISDFTAFQNVVLVLLNMLDNVDKSIGYLCTEKSNVYRDHSESSSRSYGNNS", "sequence_length": 330, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f29eb697e02571974da5e3e25ad55743f3e5f54ace0c7647b260a199fbe84f73", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P5S2.json", "taxon_id": "9606", "uniprot_accession": "Q6P5S2", "uniprot_release": "2026_03" } ], "pfam_id": "PF05612", "short_name": "Leg1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porcine circovirus 2", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/circovir-orf3-pf05614.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05614", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/circovir-orf3-pf05614.yaml" } ], "pfam_ids": [ "PF05614" ], "protein_name": "Protein ORF3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVTIPPLVSRWFPVCGFRVCKISSPFAFTTPRWPHNDVYIGLPITLLHFPAHFQKFSQPAEISDKRYRVLLCNGHQTPALQQGTHSSRQVTPLSLRSRSSTFNK", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f8b6a935bfdf872492e4d7b7eb643e0546aaeb6bcb008ec6ab318417c8ce8db7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O56124.json", "taxon_id": "85708", "uniprot_accession": "O56124", "uniprot_release": "2026_03" } ], "pfam_id": "PF05614", "short_name": "Circovir_ORF3", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/nucleoplasmic-tho-complex-go0000446.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000446", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/nucleoplasmic-tho-complex-go0000446.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/thoc7-pf05615.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05615", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/thoc7-pf05615.yaml" } ], "pfam_ids": [ "PF05615" ], "protein_name": "THO complex subunit MFT1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLSQKQIDQVRTKVHYSEVDTPFNKYLDILGKVTKLTGSIINGTLSNDDSKIEKLTEQNISQLKESAHLRFLDLQSSIDTKKVADENWETCQQETLAKLENLKDKLPDIKSIHSKLLLRIGKLQGLYDSVQVINREVEGLSEGRTSLVVTRAEWEKELGTDLVKFLIEKNYLKLVDPGLKKDSSEERYRIYDDFSKGPKELESINASMKSDIENVRQEVSSYKEKWLRDAEIFGKITSIFKEELLKRDGLLNEAEGDNIDEDYESDEDEERKERFKRQRSMVEVNTIENVDEKEESDHEYDDQEDEENEEEDDMEVDVEDIKEDNEVDGESSQQEDNSRQGNNEETDKETGVIEEPDAVNDAEEADSDHSSRKLGGTTSDFSASSSVEEVK", "sequence_length": 392, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0723c639230ca18a53b848328f2a1d121c151909244e2d4a0032dd6c2f62217a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P33441.json", "taxon_id": "559292", "uniprot_accession": "P33441", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/prolamin-like-domain-ipr008502.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/prolamin-like-pf05617.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05617", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/prolamin-like-pf05617.yaml" } ], "pfam_ids": [ "PF05617" ], "protein_name": "Egg cell-secreted protein 1.2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASNTSFLFATIAILLVLNISGRTLPETEDSTNIAARLNGGGLMECWNALYELKSCTNEIVLFFLNGETKLGVDCCQAVEVITTDCWPAMLTSLGFTSDETNVLRGFCQSPNSGGSSPAPSSVKL", "sequence_length": 125, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d6745f47740f5c2f7850b69c0e93332e98ea3dc65e561adc1ad25296db02083d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SJ24.json", "taxon_id": "3702", "uniprot_accession": "Q9SJ24", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/prolamin-like-domain-ipr008502.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008502", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/prolamin-like-domain-ipr008502.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/prolamin-like-pf05617.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05617", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/prolamin-like-pf05617.yaml" } ], "pfam_ids": [ "PF05617" ], "protein_name": "Egg cell-secreted protein 1.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASKSSFMATFNIVTLMLMVASSTVTARPLMKPSMGTSSPTTSLVYRLKLDEDTGYCWDSLMQLQHCSGELILFFLNGETYIGPGCCSAIRTIGRKCWPTMIGVLGFTAQEGDMLQGYCDGNDSDNNGEDHALASSTLPLSVNFKTTVVRSSASPSNP", "sequence_length": 158, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4c55cf9e6c734de9aa0e0194dd28fa7f8689bced7a818717746792341353ac87", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SRD8.json", "taxon_id": "3702", "uniprot_accession": "Q9SRD8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/prolamin-like-domain-ipr008502.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008502", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/prolamin-like-domain-ipr008502.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/prolamin-like-pf05617.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05617", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/prolamin-like-pf05617.yaml" } ], "pfam_ids": [ "PF05617" ], "protein_name": "Egg cell-secreted protein 1.4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASNTTFLFSTVTLLIILLNTTVSGRDLPAESSTNIAARLQSGGLMECWNALYELKSCTNEIVLFFLNGETKLGVSCCESVDIITTNCWPAMLTSLGFTPEEANVLRGFCQNPNSGDSSPAPSPKIV", "sequence_length": 127, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a33028404927732b7b4a557ffa780ee5042ec570ee7d9ee558c2481894ce7dd1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9T039.json", "taxon_id": "3702", "uniprot_accession": "Q9T039", "uniprot_release": "2026_03" } ], "pfam_id": "PF05617", "short_name": "Prolamin_like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05618", "short_name": "RimB-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05619", "short_name": "DUF787", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem208-snd2-pf05620.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem208-snd2-pf05620.yaml" } ], "pfam_ids": [ "PF05620" ], "protein_name": "Transmembrane protein 208", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPQQKGKQGTKGAKQIVEENKTTLTFYRNMAIGCAAPALLLSFLVFEVTKTSVFMHILSLLILGSSYQFMAFMSQAKYSESGALLDSGNDLNMEGGIAENVKDLIILTSGTLLLALISNYFWLVLLLAPIRAGWMLWGSVIQPWLSQRNAQDDNPQVDEKKQKKMDRRMRRMR", "sequence_length": 174, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f28fa9879a62816504f4092eef707053f4aba69e5f0a28b0b03be2440488945", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1ZA77.json", "taxon_id": "7227", "uniprot_accession": "A1ZA77", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem208-snd2-pf05620.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem208-snd2-pf05620.yaml" } ], "pfam_ids": [ "PF05620" ], "protein_name": "SRP-independent targeting protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGKAGRKQASSNAKIIQGLYKQVSLFLGMAIVRLFISRKVTIGQWIKLVALNVPMFVALYIIVLSGKPKYDGNRVVKQGIDLNDNTNLISYFFDLIYLSLFGNIGIIAFRTFKFWWCLLLCPIYAGYKLYGLKNMFMPGAQQTQADNRSKNANEGQSKSKRQMKRERRGETDSKIKYKYR", "sequence_length": 181, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6064477b377f84c187e8fb30a53189aed7a33a7b6f0dfd6608f2985f50f6e5b3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q99382.json", "taxon_id": "559292", "uniprot_accession": "Q99382", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem208-snd2-pf05620.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem208-snd2-pf05620.yaml" } ], "pfam_ids": [ "PF05620" ], "protein_name": "Transmembrane protein 208", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPKGKVGTRGKKQIFEENRETLKFYLRIILGANAIYCLVTLVFFYSSASFWAWLALGFSLAVYGASYHSMSSMARAAFSEDGALMDGGMDLNMEQGMAEHLKDVILLTAIVQVLSCFSLYVWSFWLLAPGRALYLLWVNVLGPWFTADSGTPAPEHNEKRQRRQERRQMKRL", "sequence_length": 173, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7355d1bd15b44d65d697a3f3dd531fb44725c7ecad4fb39b3298d4f529d85f1f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BTX3.json", "taxon_id": "9606", "uniprot_accession": "Q9BTX3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem208-snd2-pf05620.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem208-snd2-pf05620.yaml" } ], "pfam_ids": [ "PF05620" ], "protein_name": "Transmembrane protein 208", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPKGKVGTRGKKQIFEENKETLKFYLRIILGANAIYCLVTLVFFYSSASFWAWMALGFSLAVYGASYHSMSSMARASFSEDGSLMDGGMDLNMEQGMAEHLKDVILLTAIVQVLSCFSLYIWSFWLLAPGRALYLLWVNVLGPWFTADSGAPAPELNEKRQRRQERRQMKRL", "sequence_length": 173, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5669b65500bbe09544672897e80f3fa8f93f5d7277854496cedd2c58b0768223", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CR96.json", "taxon_id": "10090", "uniprot_accession": "Q9CR96", "uniprot_release": "2026_03" } ], "pfam_id": "PF05620", "short_name": "TMEM208_SND2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05623", "short_name": "DUF789", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf790-pf05626.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05626", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf790-pf05626.yaml" } ], "pfam_ids": [ "PF05626" ], "protein_name": "Endonuclease Bax1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPKELLDVRRAKGRIFPKFADERDYELAEKVIEIFKKGLGKKYGNLMKQARKLENAKNFKKVRGFIRVLENHCIEKSCAFDVDSELEPRKVRMLLFEHGFVTSKKERDRVLEYVARYFSTTPETVERAMYADREEELILTKFRPLTPDNLIKLYNLSLLQTTLFNALRLTFWASDRHKEIFRSIKRLGLMYELYEDSGRLMVEVTGAATLLKMTRKYGVSFAKLIPWILRAKNWFIRAEISDFDRLYIMEIDDRIRDLFPDVEERLSYDSTLEEEFARKMQMLGYEVEREPDVVKAGKYAFIPDFAVNLGDKKVYIEIAGFWTDEYLRKKAEKIKSSSIPLILIAREDFGDGGANVKDVILFSRKIPYGEVIKALKRYKPEKKVEGDVVELENFAEVPSEYVIAGKYAVRREIFEEIKREIEVSNPSTLEDIKAILKKYGLGESAIRAFGYRVRWIGLGEAVIERTD", "sequence_length": 468, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6dee81e32e71536b227872b5ee966d862b44ea2197332e12391d9f1739d5b370", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O29890.json", "taxon_id": "224325", "uniprot_accession": "O29890", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf790-pf05626.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05626", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf790-pf05626.yaml" } ], "pfam_ids": [ "PF05626" ], "protein_name": "Endonuclease Bax1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPWELARFSIVKDEVLPHFATNEDLDLANEIISLFKAGKKLGEIDEEIEYLEKIYDHKLVRAFVKLLTRLCEFELDSPIPPIQIRRELFKYGPVLDEKEREDIIQKVSKKLGADIMRFVFSDLDEEKKIIKAPTISAEDLIRWYNLSLLQTLLFKAYKLTVYVSSNWKEIIRRAKWLGLMYFAYDKPLRFEFLGPATLVKLTEKYGRNLAVLLQFIISSQNWKIEAELVLGKKFKRVYKLKLANFKELKELVIDEKRFDSSVEEKFYKDFTNVIKGWKIIREPEPLVVDNRVFIPDFLVEKGNLKVYVEIVGFWTKEYIKEKLDKLKKVKYPILILLNEELGKEKFNGMNVITYKRKIDISLVYKWLRELENKYLNEVKVDYTISGDIISLNEIASKLSLPVEVIRKNIKIFPGYIFLKNYYVSEKFLEKLRNENFDNKSLKELVSAYGDYIVEVLEFLGYKLKWQGISDAIVIKDKKVN", "sequence_length": 481, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d093bee0db41db7791c210b7a950ff5f81cb1eb4ce04831f30d7ccbadba1d97", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q970I1.json", "taxon_id": "273063", "uniprot_accession": "Q970I1", "uniprot_release": "2026_03" } ], "pfam_id": "PF05626", "short_name": "DUF790", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/molybdate-ion-transmembrane-transporter-activity-go0015098.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015098", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/molybdate-ion-transmembrane-transporter-activity-go0015098.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"7b0e4ee52dee180ceefccd5a7f2894eff01a9ffb31346e59e4bbc3a013b9879e", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSITYSAISFSGFSPKSVPFAIHSVTRRQFLNPNTFYRFGFSPSLQGSSIEFSLQLNSRVVLSKERRSLPLVVRNDRPQNEDLPKQYTRREKKPFPVPIVDLRRAARERVKNNKDKPKRPLPPPKNGMVVKSLVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVGPYGHPFKSCKGPNTSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVPAVVELCIQGGVEIPEFPAKRRRKPIIRIGKSEFVDADETELPDPEPQPPPVPLLTELPVSEITPPSSEEETVSLAEETLQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGPTGHKAQNCGAFKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPMQRELRSFYGQAPAVVEICAQAGAVVPEHYRATMRLEVGIPSSVKEAEMVV", "sequence_length": 440, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": 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"sequence_sha256": "4d6c551c7b9fd76570524d915d9b6c6cc36a91a42dbbd9e17c2d2a42e32e32c9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FH50.json", "taxon_id": "3702", "uniprot_accession": "Q9FH50", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/apo-domain-ipr023342.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023342", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/apo-domain-ipr023342.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/apo-domain-ipr023342.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023342", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/apo-domain-ipr023342.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/apo-rna-bind-pf05634.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05634", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/apo-rna-bind-pf05634.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/apo.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51499", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/apo.yaml" } ], "pfam_ids": [ "PF05634" ], "protein_name": "APO protein 1, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLVSPACRGVYLQTIDPKPIDFSARASYALCFQIPTSIPKRECLMRLGTVFCFNQKHREQTSFKKRYVSTQNVDLPPILPKNKKKPYPIPFKQIQEEARKDKKLAQMGIEKQLDPPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVELCIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDTLGVFERYPPPTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEICMHSGARVPQRYKAMMRLDIIVPDSQEADMVA", "sequence_length": 436, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e2d7a3d5218129ff3e92714662f3f6df9f04ee6aacb803030ef18f0a2af943f9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9XIR4.json", "taxon_id": "3702", "uniprot_accession": "Q9XIR4", "uniprot_release": "2026_03" } ], "pfam_id": "PF05634", "short_name": "APO_RNA-bind", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / CCUG 15529 / CIP 8149 / NCTC 11857 / SLCC 5334 / V8)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/high-ntase1-pf05636.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05636", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/high-ntase1-pf05636.yaml" } ], "pfam_ids": [ "PF05636" ], "protein_name": "tRNA(Met) cytidine acetate ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKATGIVVEYNPFHNGHQLHLNKARELTKADVVIAVMSGSFVQRGEPAILPKWERTKMALAAGVDMVVELPVSFATQHATIFAEESVRILDALHVDALFFGSEHGVSEDFLTAAKTVVEHEASFNQAIQLALIDKKTSYARAYTETFKQSFGTELLDVTKPNNILGFHYALAIQKQNPTISLQTMARIHAGYHDIEANHDQIASATAIRKLLLAGNLEEASRYLPASSIEILKNYDGPFLSWENYWALLKYRLIQAETDELEGIRNVSEGIQNRMQIAATKAQYFSDFIESMKTKRYSNARIQRTALQILLNARNIPSAPYIRILGMNKTGQKYLSHHKKNISLPIVTTVSKAAPGLLEEDLRATNIYTLVKGLENYQAGDFHIPPILKSQT", "sequence_length": 392, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea4b2b2665ce7cde69af748cc7b68b716eef60a3bc6090943e329116cf2c6fd6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0AKE9.json", "taxon_id": "386043", "uniprot_accession": "A0AKE9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"MNVSAIVVEYNPMHNGHLYHIKKTKKLTNCDALVCIMSGNFVQRGFPSILDKWTKANMAISNGVDLVIELPTLYSLSSAEFFSFGAVSILDSLNIINSICFGSEIGNINALQDIATTLLEEPLEYKILLKNYLDKGISFAKARNLALVELNRDNKIMSENINKILSLSNNILGIEYLKSLLLLNSSIKPFTITREGADYKDENLHEEYSSASSIRKYLKENKNINILKDFLPLEGFLEFKRLITKGYNFSMEDSMINYIRYKYISGYKNLHNLIDVSEGLDNRIYKSLEKNFTYDSLVGEIKSKRYAYSRIGRILCQYFIGFENYDLNSLLKSTPNYMRVLASNEMGLKVLKKIKKHSSTNIYTKLPKNTNTLLSLDIKATNAYSLLNNNIRFNEDYFRSPTIIKNTIY", "sequence_length": 409, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "071216c775b88c007fe674e24e3f97ab3063b26c9f7f6dde2c10cfc8dd243b6f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5I4R8.json", "taxon_id": "441771", "uniprot_accession": "A5I4R8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/high-ntase1-ass-pf16581.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16581", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/high-ntase1-ass-pf16581.yaml" } ], "pfam_ids": [ "PF05636", "PF16581" ], "protein_name": "Uncharacterized protein MTH_1126", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"data/traits/function/molecular_function/go/ligase-activity-forming-carbon-nitrogen-bonds-go0016879.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016879", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/ligase-activity-forming-carbon-nitrogen-bonds-go0016879.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/nucleotidyltransferase-nf010191.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF010191", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/nucleotidyltransferase-nf010191.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05636" ], "protein_name": "tRNA(Met) cytidine acetate ligase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c4f67217eb424c15734b115c525f4c071f46fd3a307c2f4b9a681abc97a12b6f", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKAVGLVVEYNPFHNGHLYHAQTAKLQTGCDTAVAVMSGHFLQRGEPAVVSKWARTKMALQSGVDLVIELPYLYAVQKADIFARGSVSILNELECEALFFGSENGDIKPFLETAQLIDEHKHILNDRIKEELKKGASYPAAAAIAFSSILHTESALDLSKPNNILGYQYVTSILTGGYPMKPYTTARISSDYHDADLPEGENHIASATSIRKAMIGQNLEACLRFLPAASARELAAYRKSFGLWHTPESYFSYLKYSLSTVTARELQQVYEVEEGLEHRIIRSIRKSSSYQEFMELLKTKRYTWTRLQRMNTHILTRTKKQDMQKLLDNDKAPYIRLLGMTKKGQAYLSEKKKALSVPLVSKLSSFSHPALDLDVKASRIYSLPIEEPLRTEFDLQEYGHAPIRYDEDEQHFLNV", "sequence_length": 415, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c4f67217eb424c15734b115c525f4c071f46fd3a307c2f4b9a681abc97a12b6f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34513.json", "taxon_id": "224308", "uniprot_accession": "O34513", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/putative-cytidyltransferase-related-c-terminal-region-ipr032266.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/putative-cytidyltransferase-related-c-terminal-region-ipr032266.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/high-ntase1-ass-pf16581.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16581", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/high-ntase1-ass-pf16581.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-58-620-1-20-58-620.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-58-620-1-20-58-620.yaml" } ], "pfam_ids": [ "PF05636", "PF16581" ], "protein_name": "Uncharacterized protein MJ0951", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLIGEIMDLNLKNFLEDREEIIRDAKRKDEKSFKDFKKIVEEIKERENKDKIVCDFTEYNPLHKGHKYALEKGKEHGIFISVLPGPLERSGRGIPYFLNRYIRAEMAIRAGADIVVEGPPMGIMGSGQYMRCLIKMFYSLGAEIIPRGYIPEKTMEKVIDCINKGYHIQVKPYKIICIETGEILGEKLNIDNYVIASMSQMIYKLNREGLKFNPKFVFVKRLEGISGTKIREAIFSGKFEDIKNMLPKTTLSILKELYDNGKLNELILKRFEDRILETANEYDLYEYLPSNVAEILEKKRPFNNIEEIKNSLPYGFSRHFRERILSKLEARIPNETLSKYINNYPAKIKILAVKL", "sequence_length": 355, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "778301f11a4f089944b56ba7993a05bcc3a505c5ff53310f408529ca330b57f7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58361.json", "taxon_id": "243232", "uniprot_accession": "Q58361", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/high-ntase1-ass-pf16581.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16581", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/high-ntase1-ass-pf16581.yaml" } ], "pfam_ids": [ "PF05636", "PF16581" ], "protein_name": "Uncharacterized protein MMP1471", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDEIKSFEKDRNLIIEDSKNSKNNIVDVQKLIEALKDEKNAKNIVVDFTEYNPLHNGHKYCMDFGKSEGLFISVIPGPLERSGRGIPYLVNRHIRAEMALLAGADLVVEGPPMGIMGSGQYMQCLIKIFSALNGDIIPRGYIEEETMERVINSINNGNHIKIKPYNISCIETREKLGEKLEIDNYVIASMSYTIYKLKENFPKWNPKFKFIERIEGISGTKIREGVFNNNFESIKHMLPITTIDVFKNFGDNLSEIILKRNEEMVLDTVNNFDLNKYLPENISEKLNEKEYYESIEEIKEYIPRGFSKNNIERTISKLEARIEKETISKYIENYPANLRILNGINNHE", "sequence_length": 349, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6b3868396e68baa2eaf470d6f94a2b750b195fb5507cc13a0caeee02b2323055", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6LX81.json", "taxon_id": "267377", "uniprot_accession": "Q6LX81", "uniprot_release": "2026_03" } ], "pfam_id": "PF05636", "short_name": "HIGH_NTase1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/type-vi-secretion-system-tube-protein-tssd-tigr03344.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR03344", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/type-vi-secretion-system-tube-protein-tssd-tigr03344.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/type-vi-secretion-system-effector-hcp-ipr008514.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008514", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/type-vi-secretion-system-effector-hcp-ipr008514.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/t6ss-hcp-pf05638.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05638", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/t6ss-hcp-pf05638.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/hcp1-like-superfamily-ipr036624.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036624", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/hcp1-like-superfamily-ipr036624.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/hcp1-like-2-30-110-20.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.30.110.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/hcp1-like-2-30-110-20.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P46855", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05638", "PF30439" ], "protein_name": "hcp1 family member YhhZ", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "095471ae9a07bb361cfa745fddd57eeda808f54485919ca5fdf46f319a18ba90", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSNIVYLTVTGEQQGSISAGCGTSESTGNRWQSGHEDEIFTFSLLNNINNTGLGSQFHGITFCKLIDKSTPLFINSINNNEQLFMGFDFYRINRFGRLEKYYYIQLRGAFLSAIHHQIIENQLDTETITISYEFILCQHLIANTEFSYLALPENYNRLFLPNSKNQTNNRFKTLNSKAIGRLLAAGGVYNGNIEGFRDTAEKLGGDAIKGYDQILNEKTAGIAIATASILLTKRSNVDTYTEINSYLGKLRGQQKLLDGIDIIEIIYIKRPSKDLANLRKEFNKTVRKNFLIKLAKTSEASGRFNAEDLLRMRKGNVPLNYNVHHKLSLDDGGTNDFENLVLIENEPYHKVFTNMQSRIAKGILVGESKITPWAIPSGSIYPPMKNIMDHTK", "sequence_length": 392, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "095471ae9a07bb361cfa745fddd57eeda808f54485919ca5fdf46f319a18ba90", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P46855.json", "taxon_id": "83333", "uniprot_accession": "P46855", "uniprot_release": "2026_03" } ], "pfam_id": "PF05638", "short_name": "T6SS_HCP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05639", "short_name": "Pup", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nkain-pf05640.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nkain-pf05640.yaml" } ], "pfam_ids": [ "PF05640" ], "protein_name": "Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGCCTGRCSLVCLCALQLLSALERQIFDFLGFQWAPILGNFLHIIVVILGLFGTIQYRPRYIMVYTVWTALWVTWNVFIICFYLEVGGLSKDTDLMTFNISVHRSWWREHGPGCVRRVLPPSAHGMMDDYTYVSVTGCVVDFQYLEVIHSAVQILLSLVGFVYACYVISISMEEEDTCRNK", "sequence_length": 181, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "da1473f09073dbbe85cc67e697ae514d3dea560ef6778cab479ec2a09c565244", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3URJ8.json", "taxon_id": "10090", "uniprot_accession": "Q3URJ8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nkain-pf05640.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nkain-pf05640.yaml" } ], "pfam_ids": [ "PF05640" ], "protein_name": "Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKCSGRCTLVAFCCLQLVAALERQIFDFLGYQWAPILANFLHIMAVILGIFGTVQYRSRYLILYAAWLVLWVGWNAFIICFYLEVGQLSQDRDFIMTFNTSLHRSWWMENGPGCLVTPVLNSRLALEDHHVISVTGCLLDYPYIEALSSALQIFLALFGFVFACYVSKVFLEEEDSFDFIGGFDSYGYQAPQKTSHLQLQPLYTSG", "sequence_length": 207, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d7081b36934a2a138c9837f471d6ae46f9106fd25111e4c6b006347c428320b5", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q4KMZ8.json", "taxon_id": "9606", "uniprot_accession": "Q4KMZ8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nkain-pf05640.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nkain-pf05640.yaml" } ], "pfam_ids": [ "PF05640" ], "protein_name": "Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGYCSGRCTLIFICGMQLVCVLERQIFDFLGYQWAPILANFVHIIIVILGLFGTIQYRPRYVTGYAVWLVLWVTWNVFVICFYLEAGDLSKETDLILTFNISMHRSWWMENGPGCMVTSVTPAPDWAPEDHRYITVSGCFLDYQYIEVAHSSLQIVLALAGFIYACYVVRCITEEEDSFDFIGGFDSYGYQGPQKTSHLQLQPMYMSK", "sequence_length": 208, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1aa9987c1d93408e46a9c222ddc5ef2e8b3468e3d1590539bd58128877358dcf", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q4PNJ2.json", "taxon_id": "10090", "uniprot_accession": "Q4PNJ2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nkain-pf05640.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nkain-pf05640.yaml" } ], "pfam_ids": [ "PF05640" ], "protein_name": "Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGYCSGRCTLIFICGMQLVCVLERQIFDFLGYQWAPILANFVHIIIVILGLFGTIQYRPRYITGYAVWLVLWVTWNVFVICFYLEAGDLSKETDLILTFNISMHRSWWMENGPGCTVTSVTPAPDWAPEDHRYITVSGCLLEYQYIEVAHSSLQIVLALAGFIYACYVVKCITEEEDSFDFIGGFDSYGYQGPQKTSHLQLQPMYMSK", "sequence_length": 208, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e41b0adc52ee4446f80af2f96ec82f597945894666559e4a35281579e808d8b8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VXU1.json", "taxon_id": "9606", "uniprot_accession": "Q5VXU1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nkain-pf05640.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nkain-pf05640.yaml" } ], "pfam_ids": [ "PF05640" ], "protein_name": "Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSCSGRCALVVLCAFQLVAALERQVFDFLGYQWAPILANFVHIIIVILGLFGTIQYRLRYVMVYTLWAAVWVTWNVFIICFYLEVGGLLKDSELLTFSLSRHRSWWRERWPGCLHEEVPAVGLGAPHGQALVSGAGCALEPSYVEALHSCLQILIALLGFVCGCQVVSVFTEEEDSFDFIGGFDPFPLYHVNEKPSSLLSKQVYLPA", "sequence_length": 208, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cd642ba20d38af16e24061282110f870b62b19e88ab4a6df457ac2c3d20512b6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IVV8.json", "taxon_id": "9606", "uniprot_accession": "Q8IVV8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nkain-pf05640.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nkain-pf05640.yaml" } ], "pfam_ids": [ "PF05640" ], "protein_name": "Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGCCTGRCSLICLCALQLVSALERQIFDFLGFQWAPILGNFLHIIVVILGLFGTIQYRPRYIMVYTVWTALWVTWNVFIICFYLEVGGLSKDTDLMTFNISVHRSWWREHGPGCVRRVLPPSAHGMMDDYTYVSVTGCIVDFQYLEVIHSAVQILLSLVGFVYACYVISISMEEEDTYSCDLQVCKHLFIQMLQIIE", "sequence_length": 197, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "63870a9ac25df8fd01506ac49957316a30095a9ff33370795866528dd9f0a415", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N8D7.json", "taxon_id": "9606", "uniprot_accession": "Q8N8D7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nkain-pf05640.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nkain-pf05640.yaml" } ], "pfam_ids": [ "PF05640" ], "protein_name": "Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKCSGRCTLVAFCCLQLVAALQRQIFDFLGYQWAPILANFLHIMAVILGIFGTVQYRSRYLILYAAWLVLWVGWNAFIICFYLEVGQLSQDRDFIMTFNTSLHRSWWMENGPGCLVTPVLNSRLALEDHHVISVTGCLLDYPYIEALSSALQIFLALFGFVFACYVSKVFLEEEDSFDFIGGFDSYGYQAPQKTSHLQLQPLYTSG", "sequence_length": 207, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6372d9f9d1548229a400225eb9a23fb176b582aeeb2f73bb7de05795ef4d8b8e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D035.json", "taxon_id": "10090", "uniprot_accession": "Q9D035", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nkain-pf05640.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nkain-pf05640.yaml" } ], "pfam_ids": [ "PF05640" ], "protein_name": "Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFCSGRCTLLALCALQLVTALERQVFDFLGYQWAPILANFTHIIVVILGLFGTIQYRPRYIVVYVVWAAVWVTWNVFIICFYLEVGGLSKDSELLTFNLSGHRSWWEEHGPGCLHEEEATAGLGALHGQSLVVGAGCAMVHSYVEALHSGLQILLALLGFVYGCYVVSVLTEEEDSFDFIGGFDPFPLYHVNEKPSSLLSKQAYLPA", "sequence_length": 208, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c124b3ad83327ed00e2cd9f9e17a0acde387958db45bb352d3deadbe393ba31", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JMG4.json", "taxon_id": "10090", "uniprot_accession": "Q9JMG4", "uniprot_release": "2026_03" } ], "pfam_id": "PF05640", "short_name": "NKAIN", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gna1162-like-pf05643.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05643", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gna1162-like-pf05643.yaml" } ], "pfam_ids": [ "PF05643" ], "protein_name": "Putative lipoprotein NMB1124/NMB1162", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKPLILGLAAVLALSACQVQKAPDFDYTSFKESKPASILVVPPLNESPDVNGTWGVLASTAAPLSEAGYYVFPAAVVEETFKQNGLTNAADIHAVRPEKLHQIFGNDAVLYITVTEYGTSYQILDSVTTVSAKARLVDSRNGKELWSGSASIREGSNNSNSGLLGALVSAVVNQIANSLTDRGYQVSKTAAYNLLSPYSHNGILKGPRFVEEQPK", "sequence_length": 215, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0b34be50994d6b462d1884b9cdfa0043f13819afe6e2645347b8a385f8980758", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7DDE8.json", "taxon_id": "122586", "uniprot_accession": "Q7DDE8", "uniprot_release": "2026_03" } ], "pfam_id": "PF05643", "short_name": "GNA1162-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mff-like-domain-ipr039433.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039433", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mff-like-domain-ipr039433.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/miff-pf05644.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05644", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/miff-pf05644.yaml" } ], "pfam_ids": [ "PF05644" ], "protein_name": "Mitochondrial fission factor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEISRIQYEMEYTEGISQRMRVPEKLKVAPPNADLEQEFQDGVPNASVIMQVPERIVVTGNNEDISFSRPADLDLIQSTPFKPLALKTPPRVLTLSERPLDFLDLERPLPTPQSEESRAVGRLKRERSMSENAVRQNGQLVRNDSIVTPSPPQARVCPPHMLPEDGANLSSARGILSLIQSSTRRAYQQILDVLDENRRPVLRGGSAAATSNPHHDNVRYGISNLDAAIEGASDDMTVVDAASLRRQIIKLNRRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR", "sequence_length": 291, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "29d12bcdfb171a1e249bd8cec7a076f3ca52c5b2f924dde23bbbb2d9f68e554f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PCP5.json", "taxon_id": "10090", "uniprot_accession": "Q6PCP5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mff-like-domain-ipr039433.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039433", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mff-like-domain-ipr039433.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/miff-pf05644.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05644", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/miff-pf05644.yaml" } ], "pfam_ids": [ "PF05644" ], "protein_name": "Transport and Golgi organization protein 11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVTPQSPTPMFNGLDDDLYSDAKYAHEINDKMRVPKRIKATGEYSNEDLLLSNQNGMISSWNYHDKIDMNVPDRIVVLGHNQHLETRSAPREIQLENSILPKNPSVGLVRVQTPPRIITLTDQHFPSASEESSPIRANGHHLYGNDLDEDADDEEVHATQYVRANGVARMGFQGNDTNSVESDSQLTTGSASKRSQLNQQQHNNLDASMLAHREGTPMGELTPHEEILYLRRQLAKLNRRVLNIEINNEQRTQREKIVYCLGLAYFVLKTIFWLNRN", "sequence_length": 277, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d3e2570892e5257b45d84c51628cc019fd101c025b1e4e5a459ffdced737b19b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q961C9.json", "taxon_id": "7227", "uniprot_accession": "Q961C9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mff-like-domain-ipr039433.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039433", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mff-like-domain-ipr039433.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/miff-pf05644.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05644", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/miff-pf05644.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q969F0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05644" ], "protein_name": "Fetal and adult testis-expressed transcript protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "52100e922b0c3b2fc9559994a236b4fcf499f9ac217f8c6c707d1426740a3396", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAGGPPNTKAEMEMSLAEELNHGRQGENQEHLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAKRVWNMTATRPKKMGSQLPKPRMLRESGHGDAHLQEYAGNFQGIRFHYDRNPGTDAVAQTSLEEFNVLEMEVMRRQLYAVNRRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMNQ", "sequence_length": 183, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "52100e922b0c3b2fc9559994a236b4fcf499f9ac217f8c6c707d1426740a3396", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q969F0.json", "taxon_id": "9606", "uniprot_accession": "Q969F0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mff-like-domain-ipr039433.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039433", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mff-like-domain-ipr039433.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/miff-pf05644.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05644", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/miff-pf05644.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9GZY8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05644" ], "protein_name": "Mitochondrial fission factor", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "661812c60119b734a3eef4587f455db440163290a7612333b0d517125bf9d509", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSKGTSSDTSLGRVSRAAFPSPTAAEMAEISRIQYEMEYTEGISQRMRVPEKLKVAPPNADLEQGFQEGVPNASVIMQVPERIVVAGNNEDVSFSRPADLDLIQSTPFKPLALKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVRQNGQLVRNDSLWHRSDSAPRNKISRFQAPISAPEYTVTPSPQQARVCPPHMLPEDGANLSSARGILSLIQSSTRRAYQQILDVLDENRRPVLRGGSAAATSNPHHDNVRYGISNIDTTIEGTSDDLTVVDAASLRRQIIKLNRRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR", "sequence_length": 342, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "661812c60119b734a3eef4587f455db440163290a7612333b0d517125bf9d509", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9GZY8.json", "taxon_id": "9606", "uniprot_accession": "Q9GZY8", "uniprot_release": "2026_03" } ], "pfam_id": "PF05644", "short_name": "Miff", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mucin-catalytic-tm-and-cytoplasmic-tail-domain-ipr028199.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028199", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mucin-catalytic-tm-and-cytoplasmic-tail-domain-ipr028199.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tandem-repeating-region-of-mucin-epiglycanin-like-ipr008519.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008519", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tandem-repeating-region-of-mucin-epiglycanin-like-ipr008519.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/epiglycanin-c-pf14654.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14654", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/epiglycanin-c-pf14654.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/epiglycanin-tr-pf05647.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF05647", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/epiglycanin-tr-pf05647.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5SSG8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05647", "PF14654" ], "protein_name": "Mucin-21", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "436e35edf5f86dbe60b61685ed8606d2296001a2f21f43b72584715c082338b0", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKMQKGNVLLMFGLLLHLEAATNSNETSTSANTGSSVISSGASTATNSGSSVTSSGVSTATISGSSVTSNGVSIVTNSEFHTTSSGISTATNSEFSTVSSGISIATNSESSTTSSGASTATNSESSTPSSGASTATNSDSSTTSSGASTATNSDSSTTSSEASTATNSESSTTSSGASTATNSESSTVSSRASTATNSESSTTSSGASTATNSESRTTSNGAGTATNSESSTTSSGASTATNSESSTPSSGAGTATNSESSTTSSGAGTATNSESSTVSSGISTVTNSESSTPSSGANTATNSESSTTSSGANTATNSDSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATNSGSSTTSSGTSTATNSESSTVSSGASTATTSESSTTSSGASTATNSESSTVSSGASTATNSESSTTSSGANTATNSGSSVTSAGSGTAALTGMHTTSHSASTAVSEAKPGGSLVPWEIFLITLVSVVAAVGLFAGLFFCVRNSLSLRNTFNTAVYHPHGLNHGLGPGPGGNHGAPHRPRWSPNWFWRRPVSSIAMEMSGRNSGP", "sequence_length": 566, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "436e35edf5f86dbe60b61685ed8606d2296001a2f21f43b72584715c082338b0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5SSG8.json", "taxon_id": "9606", "uniprot_accession": "Q5SSG8", "uniprot_release": "2026_03" } ], "pfam_id": "PF05647", "short_name": "Epiglycanin_TR", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05650", "short_name": "DUF802", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mg-trans-nipa-pf05653.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05653", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mg-trans-nipa-pf05653.yaml" } ], "pfam_ids": [ "PF05653" ], "protein_name": "Probable magnesium transporter NIPA2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEMSPDNIHGVILAVSSSIFIGSSFIIKKKGLKKAGVSGARAGEGGYGYLYEPWWWAGMITMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILEEKLHMFGILGCVLCVVGSTTIVLHAPHEQGIESVKQVWHLATEPGFLAYSAVVLVVVLALIFYYEPRYGKTHMIVYVGICSLMGSLTVMSVKAVAIAIKLTFSGMNQFKYFHAWIFIIVVTICCILQINYLNKALDNFNTAVISPVYYVMFTTFTILASMIMFKDWASQSGLQIATELCGFVTILSGTFLLHKTKDMGNSTSLRGSTSHSPRDTPVFINSGSSRSSNSTRPAIL", "sequence_length": 336, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "71ecbdcebf9175ba691a85d31f301ad07e3dd6960ff99848600f225ef3100851", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B3LFA3.json", "taxon_id": "3702", "uniprot_accession": "B3LFA3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mg-trans-nipa-pf05653.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05653", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mg-trans-nipa-pf05653.yaml" } ], "pfam_ids": [ "PF05653" ], "protein_name": "Probable magnesium transporter NIPA5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVYSSGSWRDAYKGMSSDNVKGLVLALSSSIFIGASFIVKKKGLKKAGASGLRAGSGGYSYLLEPLWWIGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISASLAHIILQEKLHTFGILGCALCIVGSVTIVLHAPQEQDIVSVLEVWNLATEPAFLFYAAAVVGAAIVLIVQFIPLYGQSHVMVYIGVCSLIGSLSVMSVKALGIALKLTFSGTNQLGYPQTWVFTVIVLFCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQSGTQIMTELCGFVTILSGTFLLHTTTDMVDGESKGNLSSEEDSHLLLRIPKHSEDSNGFVQDGIILSLRRQESAKSPRPARQNKQLEDDLEAVPLRRQESSLRS", "sequence_length": 386, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5598277e07ecf7f98050342158e8ac760fba29bf7333838449b0c1d8b33edfc1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4JKQ7.json", "taxon_id": "3702", "uniprot_accession": "F4JKQ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mg-trans-nipa-pf05653.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05653", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mg-trans-nipa-pf05653.yaml" } ], "pfam_ids": [ "PF05653" ], "protein_name": "Probable magnesium transporter NIPA6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METDNGKGLILAVASSVFIGSSFILKKKGLKRAGAIGTRAGYGGYTYLLEPLWWAGMVTMIVGEAANFVAYIYAPAVLVTPLGALSIIISAVLAHFLLKEKLKKMGVLGCVSCIVGSVVIVIHAPKEQTPNSVEEIWNLATQPAFLIYVAITMSIVLALILHFEPLCGQTNILVYIGICSLMGALTVMSIKAIGIAIKLTMEGVSQIGYPQTWLFVMVAVTCVVTQLIYLNKALDTFNAAIVSPVYYVMFTTLTIVASAIMFKDWSGQDAASVASELCGFITVLTGTMILHGTREEEQQQASSEHVRWYDSRKSMNEEHLVSLYSPEY", "sequence_length": 328, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0ba0010d082626e76d1ba4ffc3202a0f511354d65653f77ad381f89277b76af1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8GWX2.json", "taxon_id": "3702", "uniprot_accession": "Q8GWX2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mg-trans-nipa-pf05653.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05653", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mg-trans-nipa-pf05653.yaml" } ], "pfam_ids": [ "PF05653" ], "protein_name": "Probable magnesium transporter NIPA7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSDNEMGLVLAVSSSVFIGSSFILKKKGLKRAAANGTRAGFGGYTYLLEPLWWVGLVTMTFGEIANFVAYVYAPAVLVTPLGALSIIISAVLAHFLLDEKLRKMGVWGCVCCIVGSVMIVIHAPQEQTPNSVEEIWKLAMQPAFLIYVAISMSIVLALILYCEPLCGQTNILVYIGICSLMGSLTVMSIKAVGIAIKLTFEGINQIWYPETWFFAMVAAICVVMQMIYLNKALDTFNAAIVSPIYYVMFTTLTIVASAIMFKDWNGQNTDSIASEICGFITVLTGTVILHSTREEEQASPRRMRWQDSGKSFDEEHLTSLYSPEY", "sequence_length": 326, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "284d60c9c025796baba4e93a9b45c4457c5c77574ccf4ed4293900211469e4d0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8GYS1.json", "taxon_id": "3702", "uniprot_accession": "Q8GYS1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mg-trans-nipa-pf05653.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05653", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mg-trans-nipa-pf05653.yaml" } ], "pfam_ids": [ "PF05653" ], "protein_name": "Probable magnesium transporter NIPA8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGEWVIGAFINIFGSVAINFGTNLLKLGHNERERLALQDGGGKMPLKPIIHNQTWRVGILVFLLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAYVVLNKMVTVKVLVATAFIVLGNVFLVAFGNHQSPVFTPEQLAEKYSNVTFLVYCGILILIVAVHHFLYRKGEVLISTPGQEISSYWKMLLPFSYAVVSGAIGSCSVLFAKSLSNLLRLAMSSSYQLHSWFTYSMLLLFLSTAGFWMTRLNEGLSLYDAILIVPMFQIAWTFFSICTGCIYFQEFQVFDALRTTMFILGMMCVFIGISLLAPDDTRGNETKDNSSSLDSIVSSSVPTEEDRLIPQSSEDGHSKDTRVVVQGMYMKAADLIAKTKTACLAALGFGEDSINASAILVMPMVSSKITGFRGNGLERAKILSMRGSGWSKLAMEEEGTRMLEKTISSKA", "sequence_length": 441, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3290c3debb6622d48df5fb82b28355bbd31af2f0bd60a19940f100244ebac599", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8RWF4.json", "taxon_id": "3702", "uniprot_accession": "Q8RWF4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mg-trans-nipa-pf05653.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05653", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mg-trans-nipa-pf05653.yaml" } ], "pfam_ids": [ "PF05653" ], "protein_name": "Probable magnesium transporter NIPA4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAESSGSWRDSYKGMSSDNIKGLVLALSSSLFIGASFIVKKKGLKKAASTGTRAGVGGYSYLYEPLWWIGMTTMLLGEIANFAAYAFAPAILVTPLGAVSIIISAVLAHIILREKLHIFGILGCALCVVGSTTIVLHAPQEREIDSVIEVWNLATEPAFMFYASLVIGAAVFLIIRFVPQYGQTNVMVYIGICSLVGSLSVMSVKALGIALKLTFSGTNQLFYPQTWIFTLVVLTCVVTQLNYLNKALDTFNTAIVSPIYYVMFTSLTILASVIMFKDWDRQNGTQIVTEICGFVTILSGTFLLHRTKDMVEGSSVILPLRISKHINEEEGIPLRRQESLRSP", "sequence_length": 343, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "350db4c1b3489860b2b24e5f3c19b2071c929dcb5de46bb5a8c916bb2b14845d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q94AH3.json", "taxon_id": "3702", "uniprot_accession": "Q94AH3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mg-trans-nipa-pf05653.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05653", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mg-trans-nipa-pf05653.yaml" } ], "pfam_ids": [ "PF05653" ], "protein_name": "Probable magnesium transporter NIPA1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDQMSPDNINGVILAVSSSIFIGSSFIIKKKGLKKAGASGVRAGEGGYGYLKEPWWWAGMITMIVGEVANFAAYAFAPAILVTPLGALSIIFSAVLAHFILKEKLHMFGILGCILCVVGSTTIVLHAPHEQKIESVKQIWQLAIEPGFLVYSAVIVIVVAILIFYYEPRYGKTHMIVYVGICSLMGSLTVMSVKAVAIAIKLTFSGTNQFKYFNTWIFILVVATCCILQINYLNKALDTFNTAVISPVYYVMFTTFTIIASMIMFKDWASQSGLKIATELCGFVTILSGTFLLHKTKDMGNSASGRGSISMPTRDTPVFTNSGSGRSSSSDKVAS", "sequence_length": 335, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e3a7bd7c76d93b44265404ad4212115cc3b9931793139ca13b15c06d34523f62", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LIR9.json", "taxon_id": "3702", "uniprot_accession": "Q9LIR9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mg-trans-nipa-pf05653.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05653", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mg-trans-nipa-pf05653.yaml" } ], "pfam_ids": [ "PF05653" ], "protein_name": "Probable magnesium transporter NIPA3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLSGSWRDAYKGMSSDNIKGLVLALSSSLFIGASFIVKKKGLKRAGASGLRAGSGGYSYLLEPLWWVGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHVILHEKLHTFGLLGCVLCVVGSITIVLHAPQEQEIDSVLQVWNLATEPAFLLYAAAVVGAAIILIVQFVPQYGQSHVMVYIGVCSLVGSLSVMSVKALGIALKLTFSGMNQLIYPQTWVFTLIVLTCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQDGTQIVTELCGFVTILSGTFLLHKTKDMVDGSSSLGNLALRLPKQLEDSNGFEQEGIPLTLRRHECTKSPRPMRQFILPQDGPEAV", "sequence_length": 368, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6833b7537aec13d073d4d1294dfcfe48a173bba2c4ce2820c553df68745d783c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LNK7.json", "taxon_id": "3702", "uniprot_accession": "Q9LNK7", "uniprot_release": "2026_03" } ], "pfam_id": "PF05653", "short_name": "Mg_trans_NIPA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf805-pf05656.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf805-pf05656.yaml" } ], "pfam_ids": [ "PF05656" ], "protein_name": "Uncharacterized protein YiiR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAAVTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAFVGTQGENKYGKDTQDVKYKADNKSSN", "sequence_length": 146, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a2d617645c11f66e7a62096eb0fedece914500f5e4f531cbf9aad762fa1b9b8d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AF34.json", "taxon_id": "83333", "uniprot_accession": "P0AF34", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf805-pf05656.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf805-pf05656.yaml" } ], "pfam_ids": [ "PF05656" ], "protein_name": "Inner membrane protein YhaH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTPGENRFGPDPKLEP", "sequence_length": 121, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3fe9c3590b1307b916e83709014ab2ea52034937d65a25daaa781539d40abf9e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64590.json", "taxon_id": "83333", "uniprot_accession": "P64590", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf805-pf05656.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf805-pf05656.yaml" } ], "pfam_ids": [ "PF05656" ], "protein_name": "Inner membrane protein YhaI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQWYLSVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLILGLELPYLSMLYLLATFLPVLALAIRRLHDTDRSGAWALLFFVPFIGWLVLLVFFCTEGTSGSNRYGNDPKFGSN", "sequence_length": 118, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "795ceec63435ed201833f8b93e03e49c2978a2bf0b05dd20e61e9657a30e9f81", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64592.json", "taxon_id": "83333", "uniprot_accession": "P64592", "uniprot_release": "2026_03" } ], "pfam_id": "PF05656", "short_name": "DUF805", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05657", "short_name": "DUF806", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05660", "short_name": "DUF807", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf007476.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007476", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf007476.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf808-pf05661.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05661", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf808-pf05661.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P46125", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05661" ], "protein_name": "Inner membrane protein YedI", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6eae31b49c50dacfe45c0999ba8f263f18333ebf95439e3945bc3686daf39f4e", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLLAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLNAQQVSGVRANRELPVVWGVAKGSLINKVILVPLALIISAFIPWAITPLLMIGGAFLCFEGVEKVLHMLEARKHKEDPAQSQQRLEKLAAQDPLKFEKDKIKGAIRTDFILSAEIVAITLGIVAEAPLLNQVLVLSGIALVVTVGVYGLVGVIVKIDDLGYWLAEKSSALMQALGKGLLIIAPWLMKALSIVGTLAMFLVGGGIVVHGIAPLHHAIEHFAGQQSAVVAMILPTVLNLILGFIIGGIVVLGVKAVEKMRGQAH", "sequence_length": 305, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6eae31b49c50dacfe45c0999ba8f263f18333ebf95439e3945bc3686daf39f4e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P46125.json", "taxon_id": "83333", "uniprot_accession": "P46125", "uniprot_release": "2026_03" } ], "pfam_id": "PF05661", "short_name": "DUF808", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Brassica napus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf809-pf05663.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05663", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf809-pf05663.yaml" } ], "pfam_ids": [ "PF05663" ], "protein_name": "Uncharacterized mitochondrial protein ORF138", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MITFFEKLSTFCHNLTPTECKVSVISFFLLAFLLMAHIWLSWFSNNQHCLRTMRHLEKLKIPYEFQYGWLGVKITIKSNVPNDEVTKKVSPIIKGEIEGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGPRK", "sequence_length": 138, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "75e7d0e457611bab07bc9ad71dbf109803ea1b0d9980eea9668b93b6375b7137", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P68513.json", "taxon_id": "3708", "uniprot_accession": "P68513", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Raphanus sativus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf809-pf05663.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05663", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf809-pf05663.yaml" } ], "pfam_ids": [ "PF05663" ], "protein_name": "Uncharacterized mitochondrial protein ORF138", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MITFFEKLSTFCHNLTPTECKVSVISFFLLAFLLMAHIWLSWFSNNQHCLRTMRHLEKLKIPYEFQYGWLGVKITIKSNVPNDEVTKKVSPIIKGEIEGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGPRK", "sequence_length": 138, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "75e7d0e457611bab07bc9ad71dbf109803ea1b0d9980eea9668b93b6375b7137", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P68514.json", "taxon_id": "3726", "uniprot_accession": "P68514", "uniprot_release": "2026_03" } ], "pfam_id": "PF05663", "short_name": "DUF809", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccdc22-coiled-coil-domain-ipr048348.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048348", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccdc22-coiled-coil-domain-ipr048348.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccdc22-n-terminal-domain-ipr048349.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048349", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccdc22-n-terminal-domain-ipr048349.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccdc22-cc-pf05667.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05667", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccdc22-cc-pf05667.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccdc22-n-pf21674.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21674", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccdc22-n-pf21674.yaml" } ], "pfam_ids": [ "PF05667", "PF21674" ], "protein_name": "Coiled-coil domain-containing protein 22", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEADRILIHSLRQAGTAVPPDVQTLRAFTTELVVEAVVRCLRVINPAVGSGLSPLLPLAMSARFRLAMSLAQACMDLGYPLELGYQNFLYPSEPDLRDLLLFLAERLPTDASEDADQPAGDSAILLRAIGSQIRDQLALPWVPPHLRTPKLQHLQGSALQKPFHASRLVVPELSSRGEPREFQASPLLLPVPTQVPQPVGRVASLLEHHALQLCQQTGRDRPGDEDWVHRTSRLPPQEDTRAQRQRLQKQLTEHLRQSWGLLGAPIQARDLGELLQAWGAGAKTGAPKGSRFTHSEKFTFHLEPQAQATQVSDVPATSRRPEQVTWAAQEQELESLREQLEGVNRSIEEVEADMKTLGVSFVQAESECRHSKLSTAEREQALRLKSRAVELLPDGTANLAKLQLVVENSAQRVIHLAGQWEKHRVPLLAEYRHLRKLQDCRELESSRRLAEIQELHQSVRAAAEEARRKEEVYKQLMSELETLPRDVSRLAYTQRILEIVGNIRKQKEEITKILSDTKELQKEINSLSGKLDRTFAVTDELVFKDAKKDDAVRKAYKYLAALHENCSQLIQTIEDTGTIMREVRDLEEQIETELGKKTLSNLEKIREDYRALRQENAGLLGRVREA", "sequence_length": 627, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6158b8727063d130ef3fd60ae4d6baafca9281e4fe980cd9775f6cf1aac8830a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O60826.json", "taxon_id": "9606", "uniprot_accession": "O60826", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccdc22-cc-pf05667.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05667", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccdc22-cc-pf05667.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccdc22-n-pf21674.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21674", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccdc22-n-pf21674.yaml" } ], "pfam_ids": [ "PF05667", "PF21674" ], "protein_name": "Coiled-coil domain-containing protein 22", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"sequence_length": 992, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "85cc7c2f9efc32de283d8663d06b2150b37e342c26427b3b48a04f4bd7b3cb37", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VBX1.json", "taxon_id": "7227", "uniprot_accession": "Q9VBX1", "uniprot_release": "2026_03" } ], "pfam_id": "PF05670", "short_name": "NFACT-R_1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05673", "short_name": "DUF815", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf816-pf05674.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05674", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf816-pf05674.yaml" } ], "pfam_ids": [ "PF05674" ], "protein_name": "Uncharacterized 29.4 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDAKYKVVDVDTFARQLITDKCSELIETENLLPANILHVVKQARDKYFEDPSVKNYEYVKNLFLRTKYMDDSIDYKNFNRRVLLIVFKFALNRGSGYFPSYRELIEVAVKRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVATKMFIEAFEFSYASNNEINLTTNKRGSDLFDPIPMPAPAPAPSASLLDNVMNERKRKLQASVTTTPPKRCKLADRPAQTTQDTPRAPQPAPVRAQRPLFTL", "sequence_length": 256, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "987f77ea569683b39ca6a189b9f5cd9b7b0a23e45325e387372f29a4e7d3a78a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10346.json", "taxon_id": "262177", "uniprot_accession": "O10346", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf816-pf05674.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05674", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf816-pf05674.yaml" } ], "pfam_ids": [ "PF05674" ], "protein_name": "Uncharacterized 7.1 kDa protein in HE65-PK2 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDDSIDYKDFNRRILLIVFKFALNKSTILSIVQRDHRVAIKRLNKINPDLKSSPRNASALQ", "sequence_length": 61, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cbe036dbe1c04db6524ba4f32e71c0e3a75cc9d8d69afca7b5a7e256d88261d1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41659.json", "taxon_id": "46015", "uniprot_accession": "P41659", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf816-pf05674.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05674", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf816-pf05674.yaml" } ], "pfam_ids": [ "PF05674" ], "protein_name": "Uncharacterized 12.5 kDa protein in HE65-PK2 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFGKSRQSSHGRTSFVDKRVATKIFIEAFEYSYTNTNAISMDKTDEFDFIKPALKPLPDARPPSLLANVMNERKRKLQNTNSTAKCLLPAPPPQLRKLEKKNHLLPLFSL", "sequence_length": 110, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b8afec1fea78a18e0c6fe721e315a7f836954383a9f90a05d4c9bf94cdff0be", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41660.json", "taxon_id": "46015", "uniprot_accession": "P41660", "uniprot_release": "2026_03" } ], "pfam_id": "PF05674", "short_name": "DUF816", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf817-pf05675.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05675", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf817-pf05675.yaml" } ], "pfam_ids": [ "PF05675" ], "protein_name": "Uncharacterized protein YoaT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRAIKQIVHFGWEQALSCLFPAVIFASLAITQIIPLPFLPRYDWLLIICVLMQLWMVRSGLETRDELKVITLFHLIGLALELFKVHMGSWSYPEEGYSKIFGVPLYSGFMYASVASYLCQAWRRLKVELVKWPSFFAVVPLAAAIYLNFFTHHFSIDIRWWLSGLVIIVFWQTWVTYEVNGARYRMPLALSFILIGFFIWIAENIATFFGAWKYPNQIDTWSLVHLGKVSSWLLLVIVSFLIVASLKQVKEQSPTKAEMDESFS", "sequence_length": 264, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "27b4b7ef7a0f159b6f4397f0dc7dfe975f93dabea4783e38b36fbc465034a6de", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34535.json", "taxon_id": "224308", "uniprot_accession": "O34535", "uniprot_release": "2026_03" } ], "pfam_id": "PF05675", "short_name": "DUF817", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05677", "short_name": "DUF818", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf819-pf05684.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05684", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf819-pf05684.yaml" } ], "pfam_ids": [ "PF05684" ], "protein_name": "Uncharacterized membrane protein YjcL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHSLISSDDVWVLWGFIAVWAAVSIGLEQRFKWASAVSGAIIALAGAMVFTNVGVLPVESPVYDTVWSYVVPLAIPLLLFQINVRQIFKESRRLLFIFLISSVGTVLGSILAFFLLKQHIPYLDKIGGMISASYIGGGVNFAAMAAKFETPGEYVSATVVADNFMMALLFFILISIPALKWFQRHYAMPFEEKVKADGNSGNSAESYWKRKDISLKDIAFNAGAAFALVAVSMKVSGYFKSIFSHPLLTGTLGDQYLVLTSLTVLIIFLFPRFFERLNGSQELGTFLIYLFFVVIGIPADLRLIVTNAPLILLFVFIIAISNLAVSLAAGKLFRVRLEEILLAVNATVGGPTTAAAMAIAKGWRELVAPIMLVGTLGYLIGNYVGTFMGNWFSSFL", "sequence_length": 396, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "be0b4d35dcb1ecdf5ce34e82bddba2687fb63c4462b2bf580e345612c3143c51", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31634.json", "taxon_id": "224308", "uniprot_accession": "O31634", "uniprot_release": "2026_03" } ], "pfam_id": "PF05684", "short_name": "DUF819", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05685", "short_name": "Uma2", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/egf-domain-serine-glucosyltransferase-activity-go0140561.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140561", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/egf-domain-serine-glucosyltransferase-activity-go0140561.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/egf-domain-serine-xylosyltransferase-activity-go0140562.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140562", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/egf-domain-serine-xylosyltransferase-activity-go0140562.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glycosyl-transferase-cap10-domain-ipr006598.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006598", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycosyl-transferase-cap10-domain-ipr006598.yaml" } ], "pfam_ids": [ "PF00630", "PF05686" ], "protein_name": "Protein O-glucosyltransferase 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQALPLGLQLALLVAAGAGARVSAPRSLAWGPGLQAAAVLPVRYFFLQSVDSDGRNFTSSPPGQTQFKVVVKSLSPKELVRIYVPKPLDRNDGTFLVRYRMHETAHKGLKIEILHGSEHVAHSPYILKGPVYHEYCDCPEDDPQVWQETLSCPASEPQIEQDFVSFPSINLQQMLKEVPTRFGDERGAVVHYTILNNHIYRRSLGKYTDFKMFSDEILLSLARKVTLPDLEFYINLGDWPLEHRKVNDTPGPIPIISWCGSLDSRDIILPTYDVTHSTLEAMRGVTNDLLSVQGNTGPSWINKTEKAFFRGRDSREERLQLVLLSKENPQLLDAGITGYFFFQEKEKELGKAKLMGFFDFFKYKYQVNVDGTVAAYRYPYLMLGDSLVLKQESPYYEHFYVALKPWKHYVPIKRNLGDLLEKVKWAKENDEEAKKIAKEGQLTARDLLQPPRLYCYYYRVLQKYAERQASKPMIRDGMELVPQPDDGTSICQCHRRRPEREEL", "sequence_length": 503, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9a1b280b13cf01abb0d04ba64ac62c8731cded63ad263e1d6c64ba9eba295a1b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G5E897.json", "taxon_id": "10090", "uniprot_accession": "G5E897", "uniprot_release": "2026_03" }, { 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"qualification_status": "NOT_ASSESSED", "record_id": "GO:0140562", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/egf-domain-serine-xylosyltransferase-activity-go0140562.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-o-linked-glycosylation-via-glucose-go0180059.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0180059", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-o-linked-glycosylation-via-glucose-go0180059.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ycf2-n-terminal-ipr056777.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ycf2-pf05695.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05695", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ycf2-pf05695.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P56786", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00004", "PF05695" ], "protein_name": "Protein Ycf2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c7a303e94498d3fe2b6e02eb35f1ef2cb03ead6af4ac02260f7333aea2ae6dba", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKGHQFKSWIFELREIVREIKNAHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSILLLRNSQGSTSNRYFTIKGVVLFVVAALLYRINNRNMVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSCNINRLIVSLLYLTKGKKISESCFRDPKESTWVLPITQKCIMPESNWSSRWWRNWIGKKRGFCCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLSPSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFCKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFHQDLFVSWGKNPHESDFFRKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQFIDPFDSISNEDSEYHYHTLINQREIQQLKERSILLDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNHLLPEESEEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEQDVSFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSDLGCDMVPKDELDMDSSNKISFLNKNPFFDLFHLFHERKRGGYTLRHESEERFQEMADLFTLSITEPDLVYHKGFAFSIDSYGLDQRQFLKEVFNFRDESKKKSLLVLPPIFYEENESFYRRLRKIWVRISCGNYLEDQKRVVFASNNIMEAVNQYRLIRNMIQIQFQYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHLSNLKKSQKKWFDPLIFLSQTERSINRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRFQVVFDQLCINQYSIDWSEVIDKKDLSKSLRFFLSKLLRFFLSKLLLFLSKLLLFLSNSLPFFFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKSKFLINGGTISPFLFNKIPKWMIDSFHTRKNRRKSFDNTDSAYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNPHHFCFYCNKRFPFYVEKARLNNSDFTFTYGQFLTILFIHNKTFSSCGGKKKHAFLERDTISPSSIESQVSNIFISNDFPQSGDERYNLYKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNLSDSEEKSLHQYLNFNSNMGLIHTPCSEKYLQRKKRSLCLKKCVDKGQMDRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSSQKFVSIFHDIMHGLDISWRILQKKLCLPQRNLISEISSKSLHNLLLSEEMIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKKDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVSGDWIDDKIESWVANSDSIDDKEREFLVQFSTLRAEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGTIYLRYLVDIHKKYLMNYEFNTSCLAERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFFIDDIDIDDSDDIDASNDIDRELDTELELLTMMNALTMDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESSYLALGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFESITMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLISNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTILLYLLSCSAGSVAQDLWSLPVPDEKNRITSYGFVENDSDLVHGLLEVQGALVGSSRTEKDCSQFDNDRVTLLFRSEPRDPLYMMQDGSCSIVDQRFLYEKYESEFEEGEGEGVLDPQQIEEDLFNHIVWAPRIWRPRGFLFDCIERPNELGFPYSAGSFRGKRIIYDEKYELQENDSEFLQSGTMQYQRRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGTLLDRMTKTLLKKRWLFSDEMKIGFM", "sequence_length": 2294, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c7a303e94498d3fe2b6e02eb35f1ef2cb03ead6af4ac02260f7333aea2ae6dba", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P56786.json", "taxon_id": "3702", "uniprot_accession": "P56786", "uniprot_release": "2026_03" } ], "pfam_id": "PF05695", "short_name": "Ycf2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05696", "short_name": "DUF826", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/wembl-pf05701.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05701", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/wembl-pf05701.yaml" } ], "pfam_ids": [ "PF05701" ], "protein_name": "Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDLKTVEASDNVVSDNVEKVNPELIDSTIRESNIQSATKVDNIPQSQTDTEETQQSQTDTEETQQSQTDDTTGNAKIYVDDTFSPSDAATAAVLTGKDSTSTTIVEEVMEPDEIGLPSVKITEAATGTARNGGGSPRTVSSPRFSGSPVSTGTPKNVDSHRGLIDTAAPFESVKEAVSKFGGITDWKSHRMQAVERRKLIEEELKKIHEEIPEYKTHSETAEAAKLQVLKELESTKRLIEQLKLNLDKAQTEEQQAKQDSELAKLRVEEMEQGIAEDVSVAAKAQLEVAKARHTTAITELSSVKEELETLHKEYDALVQDKDVAVKKVEEAMLASKEVEKTVEELTIELIATKESLESAHASHLEAEEQRIGAAMARDQDTHRWEKELKQAEEELQRLNQQIHSSKDLKSKLDTASALLLDLKAELVAYMESKLKQEACDSTTNTDPSTENMSHPDLHAAVASAKKELEEVNVNIEKAAAEVSCLKLASSSLQLELEKEKSTLASIKQREGMASIAVASIEAEIDRTRSEIASVQSKEKDAREKMVELPKQLQQAAEEADEAKSLAEVAREELRKAKEEAEQAKAGASTMESRLFAAQKEIEAAKASERLALAAIKALEESESTLKANDTDSPRSVTLSLEEYYELSKRAHEAEELANARVAAAVSRIEEAKETEMRSLEKLEEVNRDMDARKKALKEATEKAEKAKEGKLGVEQELRKWRAEHEQKRKAGDGVNTEKNLKESFEGGKMEQSPEAVVYASSPSESYGTEENSETNLSPQTKSRKKKKKLSFPRFFMFLSKKKSHNN", "sequence_length": 807, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dda7f90c6f5bef7dbef1627c0f261049ef2bdbc14f604d67ef967a3445e3e702", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O48724.json", "taxon_id": "3702", "uniprot_accession": "O48724", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chloroplast-accumulation-movement-go0009904.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chloroplast-accumulation-movement-go0009904.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chloroplast-avoidance-movement-go0009903.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009903", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chloroplast-avoidance-movement-go0009903.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/wembl-pf05701.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05701", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/wembl-pf05701.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9C9N6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05701" ], "protein_name": "Protein PLASTID MOVEMENT IMPAIRED 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "305f16e26ead7a73d09016358068739e417a181cad400791f62fc7e0f24ea2d0", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGERNLDGTVSVKATINKYGQKATRSVIKSSVAEDLHKSGRELGIYRESRRVAESAKAKAEVELCKAKKIVKELTLRIEESNRRLKSRRIDIEAVMNESRIDGNGGYVRIMRELEDMKQELSKLKLDVVYVSREKVVAEKEVMELESRMEENLKLLESLKLEVDVANEEHVLVEVAKIEALKECKEVEEQREKERKEVSESLHKRKKRIREMIREIERSKNFENELAETLLDIEMLETQLKLVKEMERKVQRNESMSRSKNRAFERGKDNLSVLKEVTEATEAKKAELASINAELFCLVNTMDTLRKEFDHAKKETAWLDKMIQKDDVMLERLNTKLLIAKDQLEAVSKAEERISYLADNLTTSFEKLKSDREAAKKEELKLREEARIINNEIQKTETGFDGKEKELLSKLDELEKAKHAESLALEKLETMVEKTMETREMESRRNSTITISRFEYEYLSGKACHAEETAEKKVEAAMAWVEALKASTKAIMIKTESLKRVSGKTMLEEERESFRMQRSLSIKRLVQDEIQKFKGNSEDNGLINSPKPVRKSVRLSGKFAPVQGGKSRRYSSGNRATPTFFVIKKKKKVPNMVKFFSRKRRNSSLEQ", "sequence_length": 607, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "305f16e26ead7a73d09016358068739e417a181cad400791f62fc7e0f24ea2d0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9C9N6.json", "taxon_id": "3702", "uniprot_accession": "Q9C9N6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chloroplast-accumulation-movement-go0009904.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chloroplast-accumulation-movement-go0009904.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/wembl-pf05701.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05701", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/wembl-pf05701.yaml" } ], "pfam_ids": [ "PF05701" ], "protein_name": "Protein PLASTID MOVEMENT IMPAIRED 15", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLNRAMENSDMKRNSSTLLDLPVVKSSLVVEAIHMSRKKLGWYNESRRDSETVKARVEAGLSEVKKSVEELALLIKRSNRSAGFQEKDMEVLKMEEKYAEVMRVLEVVKEEVSRVKLDVSSVLIERVAAEEKVEELRFKTEGGLRLLESLKKEIEVANEEHLMVALGKIEALKGYKEIERQREGKAIKVLDLLVERNKRIKNMLEEAERSKDIEIELFETSTDVEMLETQLKLFKKMERRVQGRDSSSMSRSNRSFGRGKYSLSVLKEVTEGKKEELASVKVEIFRVMTVMDALRNEIIRARDETACLGKILREDDVKIEKLNSKILIEKSKLEVVSIAEERISSLAENFVGSLEKIKKSRNAAKKEEFLFKEEKTVTKAETQKTKLDIDKKESELNSKLDELEKVKHTEALVLEKLESLVEDMMESREMESEHCSTITISRFEYEYLSKHASQAEETAEKKVAAAAAWVEALKASTKSFLMKTETLMRESEMTKAEEEREVFRMERSLSTKRLVEGEIQKIKRNSEAEGYISPKPVGKFTPVQRGKPRRYSSVGTPTFFVIKKKKKVPRLAKFFSRRS", "sequence_length": 579, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8c5929cd98d8a6f11f916bc705ffce7f3edfe7ec1a3f0139968a64680eea63f9", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FF41.json", "taxon_id": "3702", "uniprot_accession": "Q9FF41", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/phragmoplast-microtubule-organization-go0080175.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0080175", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/phragmoplast-microtubule-organization-go0080175.yaml" } ], "pfam_ids": [ "PF05701" ], "protein_name": "WEB family protein At5g16730, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASKTKTSLSETTTTTTPTGKSSPATPRIAKRTVNKSETSNNNSPSTTTPHSRLSLDRSSPNSKSSVERRSPKLPTPPEKSQARVAAVKGTESPQTTTRLSQIKEDLKKANERISSLEKDKAKALDELKQAKKEAEQVTLKLDDALKAQKHVEENSEIEKFQAVEAGIEAVQNNEEELKKELETVKNQHASDSAALVAVRQELEKINEELAAAFDAKSKALSQAEDASKTAEIHAEKVDILSSELTRLKALLDSTREKTAISDNEMVAKLEDEIVVLKRDLESARGFEAEVKEKEMIVEKLNVDLEAAKMAESNAHSLSNEWQSKAKELEEQLEEANKLERSASVSLESVMKQLEGSNDKLHDTETEITDLKERIVTLETTVAKQKEDLEVSEQRLGSVEEEVSKNEKEVEKLKSELETVKEEKNRALKKEQDATSRVQRLSEEKSKLLSDLESSKEEEEKSKKAMESLASALHEVSSEGRELKEKLLSQGDHEYETQIDDLKLVIKATNEKYENMLDEARHEIDVLVSAVEQTKKHFESSKKDWEMKEANLVNYVKKMEEDVASMGKEMNRLDNLLKRTEEEADAAWKKEAQTKDSLKEVEEEIVYLQETLGEAKAESMKLKENLLDKETEFQNVIHENEDLKAKEDVSLKKIEELSKLLEEAILAKKQPEEENGELSESEKDYDLLPKVVEFSSENGHRSVEEKSAKVETLDHEPPQEQISNGNSNGNGMEEKEVNGKPEVETEKKEKKDESQDDDKDDSVEVIFKMWESCQIEKKEAFPDKKSELESQEEEEDSSKIDESDKTSTENIDETGNALTAEDQLTMEKKIKKKKTLLGKVGNLLKKKAPVNQK", "sequence_length": 853, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b13a3bb2de6dfbd6ba300e58d148daf780dd4145c9ef0ed86907ab13f465da06", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LFE4.json", "taxon_id": "3702", "uniprot_accession": "Q9LFE4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chloroplast-accumulation-movement-go0009904.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chloroplast-accumulation-movement-go0009904.yaml" } ], "pfam_ids": [ "PF05701" ], "protein_name": "WEB family protein At5g55860", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVAKKGRRDSSDSSPIVEVGEIDTSAPFQSVKDAVNLFGEAAFSAEKPVFRKPNPQSAEKVLVKQTELHLAQKELNKLKEQLKNAETIREQALSELEWSKRTVDELTRKLEAVNESRDSANKATEAAKSLIEEAKPGNVSVASSSDAQTRDMEEYGEVCKELDTAKQELRKIRQVSNEILETKTVALSKVEEAKKVSKVHSEKIELLRKEIAAVNESVEQTKLACSQARKEQSEIFAEKEIQQKSYKAGMEESAKKSLALKNEFDPEFAKKLEVQLTETYNEIDELQKQMETAKASDIDSVNGVSLELNEAKGLFEKLVEEEKSLQELVESLKAELKNVKMEHDEVEAKEAEIESVAGDLHLKLSRSKSELEQCVTEESKAKAALEDMMLTINQISSETEAARREAEGMRNKAKELMKEAESAHLALEDSELHLRVALDEAEEAKAAETKALEQIKSMSEKTNAARNSTSSESGSQSITLSQEEFKSLSKRAEVFDKLAEMKVAAALAQVEAVRASENETLKKLETTQEEIKKLKTATEEALKKAAMADAAKKAVEGELRRWRERDQKKAEEAATRILAEAEMKMASESSPQQHYKAPKQKPVNNKLEKTKTSVVSKKVLMPNLSGIFNRKKNQVEWGSPSYLPGEKPF", "sequence_length": 649, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f39e59922577e871110a921ac0b33203ade4fd98ae6f8b02fb62f26f80e273e2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LVQ4.json", "taxon_id": "3702", "uniprot_accession": "Q9LVQ4", "uniprot_release": "2026_03" } ], "pfam_id": "PF05701", "short_name": "WEMBL", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pleckstrin-like-plant-ipr013666.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013666", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pleckstrin-like-plant-ipr013666.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/van3-binding-protein-like-auxin-canalisation-domain-ipr008546.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008546", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/van3-binding-protein-like-auxin-canalisation-domain-ipr008546.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ph-2-pf08458.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ph-2-pf08458.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/auxin-canalis-pf05703.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05703", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/auxin-canalis-pf05703.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8W4K5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05703", "PF08458" ], "protein_name": "VAN3-binding protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4069a2240e41a378571c77fa54b257afef88e4a05d98ae403fe70cd1d52c0078", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MERELRRPNPINSSRRPEIFSSGGSSTQLPESPRGPMEFLSRSWSVSALEVSRALHTAKSASATNRPPSSINTPIPEETLNPEKEECPPENSTSVSSQFSFAASATSQLVLERIMSQSEVSPLTSGRLSHSSGPLNGGGSFTETDSPPISPSDEFDDVIKYFRTHNTIHPLFSGTGGSRGTTGNGSNTPMAGTGPKTVGRWLKDRKEKKKEETRTQNAQVHAAVSVAAVASAVAAVAAATAASSPGKNEQMARIDMAMASAAALVAAQCVEAAEIMGADRDHLTSVVSSAVNVKSHDDIVTLTAAAATALRGAATLKARALKEVWNIAAVLPAEKGASSALCGQVDTKHSDSSFSGELPVAGEDFLGVCNQELLAKGTELLKRTRGGELHWKIVSVYINKAGQAVLKMKSKHVGGTFTKKKKHMVLEVRKDIPAWAGRDLFNGDKHHYFGLKTETKRVIEFECRNQREYEIWTQGVSRLLAIAAEKKQKSSMSKWMAP", "sequence_length": 498, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4069a2240e41a378571c77fa54b257afef88e4a05d98ae403fe70cd1d52c0078", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8W4K5.json", "taxon_id": "3702", "uniprot_accession": "Q8W4K5", "uniprot_release": "2026_03" } ], "pfam_id": "PF05703", "short_name": "Auxin_canalis", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf829-pf05705.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05705", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf829-pf05705.yaml" } ], "pfam_ids": [ "PF05705" ], "protein_name": "Transmembrane protein 53", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASAQLDYTIEIPDQPCRSQENSPDQGGKEAGTRLPLVILLGWGGCSDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSETLGIPSLRVLAQKLLELLFDYEVEKEPLLFHVFSNAGVMLYRYVLELLQTHQRFCHLRVVGTIFDSGPGDSNLLGALRALAVVLEHRPAALRLLLLVAFTLVAFLFHVLLAPLTALFHTHFYDRLLDAASRWPELYLYSRADEVVLARDVERMVEARLAHQVLVRSVDFVSSAHVSHLRDYPTYYTTLCINFMHSCVHCSGPCPPHLTSAPEINA", "sequence_length": 294, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cf4e41a51bd15d65ebb61000efb7f0873866f26c669f3001f2a921e308183dd8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2TBP5.json", "taxon_id": "9913", "uniprot_accession": "Q2TBP5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf829-pf05705.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05705", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf829-pf05705.yaml" } ], "pfam_ids": [ "PF05705" ], "protein_name": "Transmembrane protein 53", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASAELDYTIEIPDQPCWSQKNSPSPGGKEAETRQPVVILLGWGGCKDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVLAQKLLELLFDYEIEKEPLLFHVFSNGGVMLYRYVLELLQTRRFCRLRVVGTIFDSAPGDSNLVGALRALAAILERRAAMLRLLLLVAFALVVVLFHVLLAPITALFHTHFYDRLQDAGSRWPELYLYSRADEVVLARDIERMVEARLARRVLARSVDFVSSAHVSHLRDYPTYYTSLCVDFMRNCVRC", "sequence_length": 277, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9cfc6e1bb533ded7c2eb618d2e811cce7fa0c640ec858d60598f975bfeda5bb9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P2H8.json", "taxon_id": "9606", "uniprot_accession": "Q6P2H8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf829-pf05705.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05705", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf829-pf05705.yaml" } ], "pfam_ids": [ "PF05705" ], "protein_name": "Transmembrane protein 53", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASAELDYSIEIPDQPCWSQKNRQGGKEAGKQQPVVILLGWGGCRDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVIAQKLLELLFDYEIEREPLLFHVFSNAGVMLYRYVLELLQTHQRFRHLHVVGTIFDSGPGDSNLIGALRALATILERRPAVLRLLLLAAFALVVILFHFLLAPFTALFHTHFYDRLQDSGSCWPELYLYSRADKVVSARDVERMVEARLAHQVMVRGVDFVSSAHVSHLRDYPTYYTSLCVDFMHNCVQC", "sequence_length": 276, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6f34cbe7149a0bf95d33c993a343eebed51eebc8e41154085e8b07b3f9fa57a4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D0Z3.json", "taxon_id": "10090", "uniprot_accession": "Q9D0Z3", "uniprot_release": "2026_03" } ], "pfam_id": "PF05705", "short_name": "DUF829", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/yebb-family-permuted-papain-like-enzyme-nf008547.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008547", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/yebb-family-permuted-papain-like-enzyme-nf008547.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/peptidase-c92-pf05708.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05708", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/peptidase-c92-pf05708.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P24238", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05708" ], "protein_name": "Uncharacterized protein YebB", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4a11aba2f17eeb1f007a6734cb3ffa0270a79960e90246bd6f21d40d12cfd87b", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNINYPAEYEIGDIVFTCIGAALFGQISAASNCWSNHVGIIIGHNGEDFLVAESRVPLSTITTLSRFIKRSSNQRYAIKRLDAGLTERQKQRIVEQVPSRLRKLYHTGFKYESSRQFCSKFVFDIYKEALCIPVGEIETFGELLNSNPNAKLTFWKFWFLGSIPWERKTVTPASLWHHPGLVLIHAEGVETPQPELTEAV", "sequence_length": 200, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4a11aba2f17eeb1f007a6734cb3ffa0270a79960e90246bd6f21d40d12cfd87b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P24238.json", "taxon_id": "83333", "uniprot_accession": "P24238", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/yiix-family-permuted-papain-like-enzyme-nf007458.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/yiix-family-permuted-papain-like-enzyme-nf007458.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/peptidase-c92-pf05708.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05708", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/peptidase-c92-pf05708.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P32167", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05708" ], "protein_name": "Uncharacterized protein YiiX", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "2384f1400aaade6814db807ccaaf652d45145a5e73ce83cf4ccdf007ea2cd3df", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKNRLLILSLLVSVPAFAWQPQTGDIIFQISRSSQSKAIQLATHTDYSHTGMLVIRNKKPYVFEAVGPVKYTPLKQWIAHGEKGKYVVRRVEGGLSVEQQQKLAQTAKRYLGKPYDFSFSWSDDRQYCSEVVWKVYQNALGMRVGEQQKLKEFDLSSPQVQAKLKERYGKNIPLEETVVSPQAVFDAPQLTTVAKEWPLFSW", "sequence_length": 202, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2384f1400aaade6814db807ccaaf652d45145a5e73ce83cf4ccdf007ea2cd3df", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32167.json", "taxon_id": "83333", "uniprot_accession": "P32167", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/yaef-family-permuted-papain-like-enzyme-nf008552.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008552", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/yaef-family-permuted-papain-like-enzyme-nf008552.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/peptidase-c92-pf05708.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05708", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/peptidase-c92-pf05708.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P37056", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05708" ], "protein_name": "Probable lipoprotein peptidase YaeF", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ec8286d1ae04bf681552830aeecf326962d31fb4b6d892bc71c8bbfbe0b66c64", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDKPKAYCRLFLPSFLLLSACTVDISQPDPSATAVDAEAKTWAVKFQHQSSFTEQSIKEITAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNNVAEATGAGVQIVSLKKAMKHSDKLFVLRVPDLTPQQATDITAFANKIKDSGYNYRGIVEFIPFMVTRQMCSLNPFSEDFRQQCVSGLAKAQLSSVGEGDKKSWFCSEFVTDAFAKAGHPLTLAQSGWISPADLMHMRIGDVSAFKPETQLQYVGHLKPGIYIKAGRFVGLTR", "sequence_length": 274, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ec8286d1ae04bf681552830aeecf326962d31fb4b6d892bc71c8bbfbe0b66c64", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P37056.json", "taxon_id": "83333", "uniprot_accession": "P37056", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/peptidase-c92-pf05708.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05708", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/peptidase-c92-pf05708.yaml" } ], "pfam_ids": [ "PF05708" ], "protein_name": "Uncharacterized protein YycO", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLKKRVSMFLVALTMCGGLFVTPAKAVKTTNYAEEIAALQPGTTPEEIMKSASQIAKQQHVKQDVILKQFYKEITADKAEGDRLAKESGMSIMGGSSGTKKLPTSAKGNIYYTNSYTAYYNHGHVGMYSAADKIVESVPSDGVRQIAYNARDVEDNSIVQTVSVSSSQKTAAADWAVSKVGDPYSFNFVNNRNTGHDGAKNCSKLLWSAFLLKAGIDIDSNGGLGVYPRDITSSSYTTTIMTIY", "sequence_length": 245, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f4c504fe1db591eb88abdee272131d654f1303096f5bb2b21aa462441a4856b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q45607.json", "taxon_id": "224308", "uniprot_accession": "Q45607", "uniprot_release": "2026_03" } ], "pfam_id": "PF05708", "short_name": "Peptidase_C92", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Epstein-Barr virus (strain B95-8)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf832-pf05734.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05734", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf832-pf05734.yaml" } ], "pfam_ids": [ "PF05734" ], "protein_name": "Tegument protein BRRF2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGQQRGSVILVPEHLAGALTKLMSDFITGQDVTLSGGNIAVKIRDAINQTPGGGDVAILSSLFALWNALPTSGRQSSRDDLIPAAVQALTTAHNLCLGVIPGETSHKDTPESLLRAIVTGLQKLWVDSCGCPECLQCLKGLKAIKPGLYEIPRIIPHTKQCSPVNLLNMLVHKLVALRGHVQLAYDARVLTPDFHEIPDLDDSDAVFARTLLAALFHLNMFFILKDYITQDSMSLKQALSGHWMSATGNPLPAAPETLRDYLEAFRNSDNHFYLPTTGPLNTFQFPEELLGRVVVIDSSLCAASHVQDVITHGVGAGVPRPRFSALPPAPSREPQQTCSQLTSRGNESSRRNLGQPGGTSPAVPPVCPIVSLTASGAKQNRGGMGSLHLAKPEETSPAVSPVCPIASPAASRSKQHCGVTGSSQAAPSFSSVAPVASLSGDLEEEEEGSRESPSLPSSKKGDEEFEAWLEAQDANLEDVQREFSGLRVIGDEDEDGSEDGEFSDLDLSDSDHEGDEGGGAVGGGRSLHSLYSLSVV", "sequence_length": 537, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e15648455445398d33869747d16afcc5b8d5243fd397199ad7fa7d16968b8222", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P03210.json", "taxon_id": "10377", "uniprot_accession": "P03210", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Epstein-Barr virus (strain AG876)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf832-pf05734.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05734", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf832-pf05734.yaml" } ], "pfam_ids": [ "PF05734" ], "protein_name": "Tegument protein BRRF2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGQQRGSVILVPEHLAGALTKLMSDFITGQDVTLSGGNIAVKIRDAINQTPGGGDVAILSSLFALWNALPTSGRQSSRDDLIPAAVQALTTAHNLCLGVIPGETSHKDTPESLLRAIVTGLQKLWVDSCGCPECLQCLKGLKAIKPGLYEIPRIIPHTKQCSPVNLLNMLVHKLVALRGHVQLAYDARVLTPDFHEIPDLDDSDAVFARTLLAALFHLNMFFILKDYITQDSMSLKQALSGHWMSATGNPLPAAPETLRDYLEAFRNSDNHFYLPTTGPLNTFKFPEELLGRVVVIDSSLCAASHVQDVITRGVGAGVPRPQFLALPPAPSRKPQQTCSQLTSRGNESSRRNLGQPGGTSPAVPPVCPIVSLTASGAKQNRGGMGSLHLAKPEETSPAVSPVCPIASPAASRSKQHCGVTGSSQAAPSSSSVAPVASLSGDLEEEEEGSRESPSLPSSKKGADEFEAWLEAQDANFEDVQREFSGLRVIGDEDEDGSEDGEFSDLDLSDSDHEGDEGGGAVGGGRSLHSLYSLSVI", "sequence_length": 537, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3a68c09de2cd393402933be1d09a5fd67696ae151151db196a1e34ce505f84af", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1HVF8.json", "taxon_id": "82830", "uniprot_accession": "Q1HVF8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human herpesvirus 4 (strain GD1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf832-pf05734.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05734", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf832-pf05734.yaml" } ], "pfam_ids": [ "PF05734" ], "protein_name": "Tegument protein BRRF2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGQQRGSVILVPEHLAGALTKLMSDFITGQDVTLSGGNIAVKIRDAINQTPGGGDVAILSSLFALWNALPTSGRQSSRDDLIPAAVQALTTAHNLCLGVIPGETSHKDTPESLLRAIVTGLQKLWVDSCGCPECLQCLKGLKAIKPGLYEIPRIIPHTKQCSPVNLLNMLVHKLVALRGHVQLAYDARVLTPDFHEIPDLDDSDAVFARTLLAALFHLNMFFILKDYITQDSMSLKQALSGHWMSATGNPLPAAPETLRNYLEAFRNSDNHFYLPTTGPLNTFKFPEELLGRVVVIDSSLCAASHVQDVITRGVGAGVPRPRFLALPPAPSREPQQTCSQLTSRGNESSRRNLGQPGGTSPAVPPVCPIVSLAASRAKQNRGGTGSLHLAQPEGTSPAVSPVCPIASPAASRSKQHCGVTGSSQAAPSSSSVTPVASLSGDLEEEEEGSRESPSPPSSKKGAEEFEAWLEAQDANLEDVQREFSGLRVIGDEDEDGSEDGEFSDLDLSDSDHEGDEGGGAVGGGRSLHSLYSLSVV", "sequence_length": 537, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a03ff2bfb8b7cad0c8f6c57c6d8945266ed61a554631cd69a6eb5335f2210651", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3KSS5.json", "taxon_id": "3470597", "uniprot_accession": "Q3KSS5", "uniprot_release": "2026_03" } ], "pfam_id": "PF05734", "short_name": "DUF832", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tango2-pf05742.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tango2-pf05742.yaml" } ], "pfam_ids": [ "PF05742" ], "protein_name": "Uncharacterized protein YGR127W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCILMATRAHPDYELILISNRDEFLARKTHATCWHNNDFILSPYDLAKTSAEKQIFGTWSGINKEGKLATILNLKLDNEQNNTKSRSRGLLPFIFLSIHKADFEDWDNYKKFEGHYDGLKSTGDFNFFYGDVIKKQYKVIDSLGRTFDVLSSTCRKDLDSYMVVSNGKFYDSSSIPGQAWEKVKVARDSLENLVLENIESDEEKIISSCFQLASKSSLPSTISNPDVLQMVDPNVTMNTIYVPPLRRPPRDDLGASIPDGDYYGTRSQIVLLVSKDSTRVTFIERVLYSSDEDVRKYSVTSPKEEKRFKFKL", "sequence_length": 312, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99cde650192418c6161e29f7fb8f71f8a602b7ecd37e2f50d42ea20071691e8b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53275.json", "taxon_id": "559292", "uniprot_accession": "P53275", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tango2-pf05742.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tango2-pf05742.yaml" } ], "pfam_ids": [ "PF05742" ], "protein_name": "Transport and Golgi organization 2 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCIIFFKFDPRPVSKNAYRLILAANRDEFYNRPSKLADFWGNNSEILSGLDMEEGKAGGTWLGISTRGKLGALTNYLQPRQEPDARGRGELVSHFLTSDMDSLSYLKKVSTEGHLYNGFNIIAADLSTSKGDVVCYYGNRGEPEPIVLTPGTYGLSNALLETPWKKLCFGKQLFMEAVEQSEALPKDVLVTQLLDVLNNEEAQLPDPAIEDQGQEYVQPILNKYAAVCVRCATYGTRTNTIILVDANGHVTFTERSMLDKDTSRWETNTYEFTLQS", "sequence_length": 276, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "64848b90c8eb5950885e022367a4f5965b40e495d98090465dfbb094fc5a6e2d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P54797.json", "taxon_id": "10090", "uniprot_accession": "P54797", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tango2-pf05742.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tango2-pf05742.yaml" } ], "pfam_ids": [ "PF05742" ], "protein_name": "Transport and Golgi organization protein 2 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCIIFFKFDPRPVSKNAYRLILAANRDEFYSRPSKLADFWGNNNEILSGLDMEEGKEGGTWLGISTRGKLAALTNYLQPQLDWQARGRGELVTHFLTTDVDSLSYLKKVSMEGHLYNGFNLIAADLSTAKGDVICYYGNRGEPDPIVLTPGTYGLSNALLETPWRKLCFGKQLFLEAVERSQALPKDVLIASLLDVLNNEEAQLPDPAIEDQGGEYVQPMLSKYAAVCVRCPGYGTRTNTIILVDADGHVTFTERSMMDKDLSHWETRTYEFTLQS", "sequence_length": 276, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e44d255d3e494bb3e812e34fe6543af67473b1458336e1f5a171bdb35a94ebd5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ICL3.json", "taxon_id": "9606", "uniprot_accession": "Q6ICL3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tango2-pf05742.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tango2-pf05742.yaml" } ], "pfam_ids": [ "PF05742" ], "protein_name": "Transport and Golgi organization protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCVIFFCADSNPQPGGYKLILASNRDEFFARATLSAAKWANADHVYGGIDLEPGREGGTWLAIGHSAGFFKVGALLNLTGEPKPRDAVGRGMIVADYVTRADEEHSILNYNERLLKDCTKYSAFNFVSIEIGSASQPARVKLLSNVPPTLEDFQNGECYGFGNSLPHSPFEKVRHGKQEFEAIVKAHGEASVETLSAQLMQLLRNKHKFWPDDELKTRAPNWGEGLSSLNVHIEEHAYGSRTHSVVLVDSENKMHFIEETMTGLDPHGEWNKTHIEKDFQNGV", "sequence_length": 283, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "746cb0385d5ec18346abd93779e7cdcb9485ae5233639cb7e8198cfa6271dafc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VYA8.json", "taxon_id": "7227", "uniprot_accession": "Q9VYA8", "uniprot_release": "2026_03" } ], "pfam_id": "PF05742", "short_name": "TANGO2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05754", "short_name": "DUF834", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05763", "short_name": "DUF835", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glrx-like-pf05768.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05768", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glrx-like-pf05768.yaml" } ], "pfam_ids": [ "PF05768" ], "protein_name": "Glutaredoxin-like protein C5orf63", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLWFQGNSMQLARSSFGLFLRNCSASKTTLPVLTLFTKDPCPLCDEAKEVLKPYENRQPYKDQKLPGTRRRRSPSSPSHPHMASQSGKRYNLTLNQVLSFDYDMGLDAPKTISSDCGAFYCLRMFKSPDMTCCFYPKQ", "sequence_length": 138, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e236afc44ae3cc1d4ac3d93fb1d050ecfc5c3a7629741ae715463d5e93015f7a", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/A6NC05.json", "taxon_id": "9606", "uniprot_accession": "A6NC05", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vaccinia virus (strain Western Reserve)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glrx-like-pf05768.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05768", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glrx-like-pf05768.yaml" } ], "pfam_ids": [ "PF05768" ], "protein_name": "Glutaredoxin-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNVLIIFGKPYCSICENVSDAVEELKSEYDILHVDILSFFLKDGDSSMLGDVKRGTLIGNFAAHLSNYIVSIFKYNPQTKQMAFVDINKSLDFTKTDKSLVNLEILKSEIEKATYGVWPPVTE", "sequence_length": 124, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "28bcb258b4dacfeacc8450a9ba2e29bae115b700e70c895777ca2449fdb27af7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P68460.json", "taxon_id": "10254", "uniprot_accession": "P68460", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Ectromelia virus (strain Moscow)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glrx-like-pf05768.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05768", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glrx-like-pf05768.yaml" } ], "pfam_ids": [ "PF05768" ], "protein_name": "Glutaredoxin-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNVLIIFGKPYCSICENVSEAVEELKSEYDILHVDILSFFLKDGDSSMLGDVKRGTLIGNFAAHLSNYIVSIFKYNPQTKQMAFVDINKSLDFTKTDKSLVNLEILKSEIEKATYGVWPPVTE", "sequence_length": 124, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fbe8b547e8cd1f7a547f7a2f2afbab510d4dea903f3be66f8a9669b515466780", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8V507.json", "taxon_id": "265874", "uniprot_accession": "Q8V507", "uniprot_release": "2026_03" } ], "pfam_id": "PF05768", "short_name": "Glrx-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sike-pf05769.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sike-pf05769.yaml" } ], "pfam_ids": [ "PF05769" ], "protein_name": "Suppressor of IKBKE 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASDMKDMSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLQLMVAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELENKELRELLSISSESLQARKENSMDTASQAIK", "sequence_length": 207, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3eaab5dc2027836aff08ce5b1dfee9b056986e36249a78ce6971598c3e7b9deb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BRV8.json", "taxon_id": "9606", "uniprot_accession": "Q9BRV8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sike-pf05769.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sike-pf05769.yaml" } ], "pfam_ids": [ "PF05769" ], "protein_name": "Suppressor of IKBKE 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGAVLPEQYQEDASDVKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGAVMRRAVQVDDNQFCKVQERLAQLELENKELRELLSISSESLQVGKESSVAPASQTIK", "sequence_length": 207, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "78c28c6efbab6d548ec350affcbeb15beb96c53f01ebea8d5d8381db81537238", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CPR7.json", "taxon_id": "10090", "uniprot_accession": "Q9CPR7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sike-pf05769.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sike-pf05769.yaml" } ], "pfam_ids": [ "PF05769" ], "protein_name": "FGFR1 oncogene partner 2 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALSKRVEAMKQYQEEIQELNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPGIIMKLKEQHSKIDMVHRNSCEGFFLDASRHILEAPQHGLERRHLEANQNELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKDDASESTSLSALVTNSDLSLRKS", "sequence_length": 253, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0ddefd72fd806e0c79f3dd4b2af73e3d0d9b788747667aa3a9a757049aa27efa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CRA9.json", "taxon_id": "10090", "uniprot_accession": "Q9CRA9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sike-pf05769.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sike-pf05769.yaml" } ], "pfam_ids": [ "PF05769" ], "protein_name": "FGFR1 oncogene partner 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPGIIMKLKEQHSKIDMVHRNKSEGFFLDASRHILEAPQHGLERRHLEANQNELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKDDASESTSLSALVTNSDLSLRKS", "sequence_length": 253, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3824b9bbddcba177b57368607e0e793950581903728cb67bfe2338e5e7e6c8fb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NVK5.json", "taxon_id": "9606", "uniprot_accession": "Q9NVK5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sike-pf05769.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sike-pf05769.yaml" } ], "pfam_ids": [ "PF05769" ], "protein_name": "FGFR1 oncogene partner 2 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNLSVGQIIMDAQRMASRVKDLDALGTALLEEAENNNRLVESLRQYQDDIESLNRISNNKTNADMVNRIQQQNINSSEILKENRELKIFIEDYERAMELMMQKYREHTVSKVLDSKFSFKELYNERMWQVIREQREKINEMAAVMQLAASVDDGVVQRELQTISQLRLENETLRELLQISKQYGSSQRPIRESDHLLEEKAVQTDSTADDSADDLSISGASVENMNNNSVIQMYSSPEQPAKVAGTTNSFNTAPVHSQSETQAPSVTLETAPPGEEPLANDNNNGPAVNTTSAPPPATTSNESVEDQATVAPAT", "sequence_length": 315, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "981d572bd8a449f9ef38bf257cafe69a358a0e00cc2eb0b7d43cf7e1351e14c3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VM65.json", "taxon_id": "7227", "uniprot_accession": "Q9VM65", "uniprot_release": "2026_03" } ], "pfam_id": "PF05769", "short_name": "SIKE", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05787", "short_name": "PhoX", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05801", "short_name": "VP2_lagovir", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf842-pf05811.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05811", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf842-pf05811.yaml" } ], "pfam_ids": [ "PF05811" ], "protein_name": "TIM double twin CX3C motif protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEVQQLRVQEAVDAMVKSVERENIRKMQGLMFRCSANCCEDNQASMQQVHQCIERCHAPLAQAQALVTSELERFQDRLARCTMHCNDKAKDSMDAGSKELQVKRQLDSCVAKCVDDHMHLIPTMTKKIKESLSSIGK", "sequence_length": 138, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99dcee42802198af9e241122541ae000326a1236a38925f085c1b5fcc59e252f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B0BN94.json", "taxon_id": "10116", "uniprot_accession": "B0BN94", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf842-pf05811.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05811", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf842-pf05811.yaml" } ], "pfam_ids": [ "PF05811" ], "protein_name": "TIM double twin CX3C motif protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMHLIPTMTKKMKEALLSIGK", "sequence_length": 138, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f3df730232b298c67246360cbcf9995fa3343957b93863a969b39f746c730b74", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96C01.json", "taxon_id": "9606", "uniprot_accession": "Q96C01", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf842-pf05811.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05811", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf842-pf05811.yaml" } ], "pfam_ids": [ "PF05811" ], "protein_name": "TIM double twin CX3C motif protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEVQQLRVQEAVDAMVKSVERENIRKMQGLMFRCSANCCEDTQASMQQVHQCIERCHAPLAQAQALVTSELERFQDRLARCTMHCNDKAKDSMDAGTKELQVKRQLDSCVTKCVDDHMHLIPTMTKKMKESLSSIGK", "sequence_length": 138, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d0350a581a87e3b6db8c0d475e8a1548218e81a504ec36dfe9840a13b9423dc3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CR98.json", "taxon_id": "10090", "uniprot_accession": "Q9CR98", "uniprot_release": "2026_03" } ], "pfam_id": "PF05811", "short_name": "DUF842", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ac76-pf05814.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05814", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ac76-pf05814.yaml" } ], "pfam_ids": [ "PF05814" ], "protein_name": "Uncharacterized 9.4 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHLYLLLGALAVFSLVYDKKENGIVFYFLILVLVFVLISPAFISKNTESAANDLPSHKAKSVRKKLEIEQALDAILNKNTSSLD", "sequence_length": 84, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "558386ec000bb160270579492bc2e3447b00f3b86fcf567296c9c7f73eff3ebe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10329.json", "taxon_id": "262177", "uniprot_accession": "O10329", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ac76-pf05814.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05814", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ac76-pf05814.yaml" } ], "pfam_ids": [ "PF05814" ], "protein_name": "Protein Ac76", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLYLLLGALAIFSLVYDKKENSIFLYLLILFLVFIIVSPAIISKNTESTVEDIPSHKAKSVRKKLEIEQALDAILNKNTSSID", "sequence_length": 84, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fa17c019eb91fa306a222e905e5cceb7c9e4427f74c7434c5eacd808c83736dc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06690.json", "taxon_id": "46015", "uniprot_accession": "Q06690", "uniprot_release": "2026_03" } ], "pfam_id": "PF05814", "short_name": "Ac76", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/acmnpv-orf101-pf05815.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05815", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/acmnpv-orf101-pf05815.yaml" } ], "pfam_ids": [ "PF05815" ], "protein_name": "Protein C42", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVIDVHIRIDSLRRLIDENMQMEIWPQLLRMCSDTVSDVDVDTSALMAFLVTVARKSQTAFANANAATASAFAAGGARAPAAMPAPAPPAQTVFGALVSAPSAEPALVDMRRYRAAARRLIQYYSLNTTTSSEFKVRDVVMTMIFLQRSENYHQLFKLLDTAMDDFTCRPQLTEAQVSTLLHTLRTLLEMPTTPIDMTTVDVMRSSFARCFASPVLRYAKVVLLQGETVSRDERTTLEELLVERGDNIQKLQPQQYVASGSEIPFCDDPEFINRLLKHLDPYPLSRMYYNAANSMFYTTMENYAVANCKFNIEDYNRIFKGAESIKKHANKTAEDSDELDIYLGTTAKRKKII", "sequence_length": 354, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8698a4f523cd8e3db135cd9f08d7f28e9ec0266f82c9e69b900d740c379ab1fb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P24653.json", "taxon_id": "262177", "uniprot_accession": "P24653", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/acmnpv-orf101-pf05815.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05815", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/acmnpv-orf101-pf05815.yaml" } ], "pfam_ids": [ "PF05815" ], "protein_name": "Protein C42", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAIALYLEINKLRLKIDEPMQLAIWPQLFPLLCDEHQSVQLNTDVLINFMMHVARKSQNTILNNNAAIASQYAAGNADVVAAPASAQPTPRPVINLFARANAAAPAQPSEELINMRRYRNAARKLIHHYSLNSTSSTEYKISDVVMTMIFLLRSEKYHSLFKLLETTFDDYTCRPQMTQVQTDTLLDAVRSLLEMPSTTIDLTTVDIMRSSFARCFNSPIMRYAKIVLLQNVALQRDKRTTLEELLIERGEKIQMLQPQQYINSGTEIPFCDDAEFLNRLLKHIDPYPLSRMYYNAANTMFYTTMENYAVSNCKFNIEDYNNIFKVMENIRKHSNKNSNDQDELNIYLGVQSSNAKRKKY", "sequence_length": 361, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ee950c80fd704f615a6dcd141d87697470758cc58dc56ea5a453e52e5521104c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P25695.json", "taxon_id": "46015", "uniprot_accession": "P25695", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cryptophlebia leucotreta granulosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/acmnpv-orf101-pf05815.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05815", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/acmnpv-orf101-pf05815.yaml" } ], "pfam_ids": [ "PF05815" ], "protein_name": "Uncharacterized protein in P7.3 3'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSAKTRLFLTIEKLKNSMDDPQMTYPFWEKFFPLLGNSTTITLELSTLSEMINEAAETAEQLIVTQGGVVYSQYVQNATNTSGTNNNMVNRRLLVPPISTATPVLQPLEIKKYHNFAEKIASYFVSASVQSSMYTVKDVVKLYLYLSHLPKFKPLFSLLEEALFTKQRNCVPAVTSDKLILILDNLRDLTVITNFRLDNEAVSLMLNNIQIVLNNELSKYPVVKVKDFISTSNVYEKEVEPFKAFGDKFELLVAQKSSHLVLSSENTLLFNSNPIIVENIAASIEYNCDINRMVYNSINNIFINSVEQSAAENIKFDVDDYNRRYRVLDRIRENLRNNYIEKVAVGDISSKKRITNNPTTIPPITLKKRRTSNLLIED", "sequence_length": 379, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "78c175f8e833612bb32e38133e7a56f7f0cea1bc77a1472ef4596560a79419da", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P41730.json", "taxon_id": "35254", "uniprot_accession": "P41730", "uniprot_release": "2026_03" } ], "pfam_id": "PF05815", "short_name": "AcMNPV_Orf101", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ac81-pf05820.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05820", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ac81-pf05820.yaml" } ], "pfam_ids": [ "PF05820" ], "protein_name": "Uncharacterized 24.9 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNPNPFLPRKALSPTALNQNLATHRRRPKSKNWTSVNKIKYDSELLLQYLYEGFGADRPYSDINVIKVYKVKVKKTGASILAHYFAHVSTSTGYEFEFHPGSQPRTFQTVHTDGLIIKVHIMCDACCKAELRRYIEGENGFNVAFRNCESILCRRVSFQTLLLGSVILLLLFNVENFSALNLLVILLILLALFCHNNYIISNPHVVFCNHKNALKNHE", "sequence_length": 218, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d90c44c68a37e45dabdd65dd279f124f370407b80cada01e803b7332f164b6b9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10334.json", "taxon_id": "262177", "uniprot_accession": "O10334", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ac81-pf05820.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05820", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ac81-pf05820.yaml" } ], "pfam_ids": [ "PF05820" ], "protein_name": "Protein AC81", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTTERPPPPPLSMSKKETPTLLDSISKKISTTETLQRLRNKNLTTLNKIKYDSELLLHYLYDDHHNKNSDYANNNINVIKISKVKVKKTGASILAHYFAQIHVSTGYSFEFHPGSQPRTFQTIHTDGLIIKVLILCDECCKKELRDYIKGENSFNVAFRNCESILCRRVSFQTVLLTCAILLLLFNVEKFSMINLLIILLILLSLFCHNNYIISNPYIEFCNHKSTNKKYDR", "sequence_length": 233, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "84453e38a0ad387b573cd7c26969ecaa43549148e897fbce4efda2d08f0ecd43", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06694.json", "taxon_id": "46015", "uniprot_accession": "Q06694", "uniprot_release": "2026_03" } ], "pfam_id": "PF05820", "short_name": "Ac81", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf846-pf05832.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05832", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf846-pf05832.yaml" } ], "pfam_ids": [ "PF05832" ], "protein_name": "Golgi apparatus membrane protein TVP23", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDQARNFYNTILKSSHPLLLSFHLAGKAVPIVFYIIGSMFLNFTPQFITVVLLLSFDFYLTKNITGRKLVQLRWWYDSTDVNKDSNFTFESYKQYAPGPPINAIDSKLFWWSMYVTPVIWGVFAVLCLLRLKIFYLILVIVAMCLTAWNTYGFRCCDRWEPNSGQSDGQDTNNWFALPSVPGFENLSRLANIQSFFQRQ", "sequence_length": 199, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b791938d0cbdcbd65f71bc57f7444d1f2b8ef325dfed7b3af5b090ef83726cc8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38962.json", "taxon_id": "559292", "uniprot_accession": "P38962", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/trans-golgi-network-membrane-go0032588.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/trans-golgi-network-membrane-go0032588.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/golgi-organization-go0007030.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0007030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/golgi-organization-go0007030.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/plant-organ-development-go0099402.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0099402", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/plant-organ-development-go0099402.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-secretion-go0009306.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009306", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-secretion-go0009306.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/unidimensional-cell-growth-go0009826.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009826", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/unidimensional-cell-growth-go0009826.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/vacuolar-transport-go0007034.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0007034", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/vacuolar-transport-go0007034.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/vesicle-mediated-transport-go0016192.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016192", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/vesicle-mediated-transport-go0016192.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf846-pf05832.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05832", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf846-pf05832.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8LEK2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05832" ], "protein_name": "Golgi apparatus membrane protein-like protein ECHIDNA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ab6ac2e2d463a75fd8b2605ad4bf1b07c41d5c7830cd0eca4787e71a7e19500e", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDPNNQIQAPVENYANPRTCLFHVLFKGAALAFYILSALFFNSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYLAAAAWFILGVFSLIRFQADYLLVVGVCLSLNVANIIGFTKCKKDAKKQFQQFASQTIASRFQSTVQSAFTLV", "sequence_length": 186, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ab6ac2e2d463a75fd8b2605ad4bf1b07c41d5c7830cd0eca4787e71a7e19500e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LEK2.json", "taxon_id": "3702", "uniprot_accession": "Q8LEK2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf846-pf05832.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05832", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf846-pf05832.yaml" } ], "pfam_ids": [ "PF05832" ], "protein_name": "Golgi apparatus membrane protein TVP23 homolog B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQQDSNDDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVYLLCGLLSSSFITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVRSRKHLTSMATSYFGKQFLRQNTGDDQTS", "sequence_length": 205, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "497d9bab232e7cdf5e87cec2f582de04e41a5fffdacb7eb033fa7010d639abe1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NYZ1.json", "taxon_id": "9606", "uniprot_accession": "Q9NYZ1", "uniprot_release": "2026_03" } ], "pfam_id": "PF05832", "short_name": "DUF846", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05838", "short_name": "Glyco_hydro_108", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human herpesvirus 8 type P (isolate GK18)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf848-pf05852.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05852", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf848-pf05852.yaml" } ], "pfam_ids": [ "PF05852" ], "protein_name": "Protein ORF35", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSTNSKREFIKSALEANINRRAAVSLFDRFGGSSAVFEKQFQDAQHAVRAHGALKREAELGTLVRKAGQRFEALKRERSILRQPRDLPRVADIDALVDAVADLKEEVAVRLDALEENGEETPTHSSSEIKDTIVRWRLDDLPPVCPETP", "sequence_length": 150, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9fc2f5e683798aa5fc944b00d90d8a66cef7cbbad8c1c718a5b1df4139fc2def", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F5HCD4.json", "taxon_id": "868565", "uniprot_accession": "F5HCD4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saimiriine herpesvirus 2 (strain 11)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf848-pf05852.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05852", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf848-pf05852.yaml" } ], "pfam_ids": [ "PF05852" ], "protein_name": "Gene 35 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSNKKEFLYSAFETEINKKASVSLFDRFGGKSCIFLHQLDHTKKSLIKHENLKRQKSIEGMLQAVDTSIQEKRKELSLLKAFNRHKLTAAEDLQDKILELKEDIHFEIESLNNGQPSSQEEENSSETSIPDTIMQWRIEALPRVPSATF", "sequence_length": 150, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f9fe63e49e6d6733bab2230661815cfcf85f03642bfe306ba8007b694b05bf5f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q01024.json", "taxon_id": "10383", "uniprot_accession": "Q01024", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Equine herpesvirus 2 (strain 86/87)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf848-pf05852.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05852", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf848-pf05852.yaml" } ], "pfam_ids": [ "PF05852" ], "protein_name": "Gene 35 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASASRDQQRDLIARGLEAEVNKRAAVSLFDRFGPSNPLFKKQYADTRLSLRSYHSCSQTERVRASLELVNLTIETKNKERALLSKLNRGAVARVEKLCDAVADLREEFDLELDSLTAAQDDPVEGGPEPADVADTITEWRAEALPSVPAEDAP", "sequence_length": 154, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "954728018ee0c854b2a99ab33b2aa8591635332d2e7d948a4852f4cbbcd6b0db", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q66639.json", "taxon_id": "82831", "uniprot_accession": "Q66639", "uniprot_release": "2026_03" } ], "pfam_id": "PF05852", "short_name": "DUF848", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cloacimonas acidaminovorans (strain Evry)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bkace-pf05853.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05853", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bkace-pf05853.yaml" } ], "pfam_ids": [ "PF05853" ], "protein_name": "3-keto-5-aminohexanoate cleavage enzyme", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPLILTAAITGAETTRADQPNLPITPEEQAKEAKACFEAGARVIHLHIREDDGRPSQRLDRFQEAISAIREVVPEIIIQISTGGAVGESFDKRLAPLALKPEMATLNAGTLNFGDDIFINHPADIIRLAEAFKQYNVVPEVEVYESGMVDAVARLIKKGIITQNPLHIQFVLGVPGGMSGKPKNLMYMMEHLKEEIPTATWAVAGIGRWHIPTSLIAMVTGGHIRCGFEDNIFYHKGVIAESNAQLVARLARIAKEIGRPLATPEQAREILALNK", "sequence_length": 276, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "832e9473bf92f4f162b7d06f31463efdf9e2a97ab59947c6306a7697c9dca55a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B0VHH0.json", "taxon_id": "459349", "uniprot_accession": "B0VHH0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bkace-pf05853.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05853", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bkace-pf05853.yaml" } ], "pfam_ids": [ "PF05853" ], "protein_name": "3-keto-5-aminohexanoate cleavage enzyme", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMEKLIITAAICGAEVTKEHNPAVPYTVEEIAREAESAYKAGASIIHLHVREDDGTPTQDKERFRKCIEAIREKCPDVIIQPSTGGAVGMTDLERLQPTELHPEMATLDCGTCNFGGDEIFVNTENTIKNFGKILIERGVKPEIEVFDKGMIDYAIRYQKQGFIQKPMHFDFVLGVQMSASARDLVFMSESIPEGSTWTVAGVGRHQFQMAALAIVMGGHVRVGFEDNVYIDKGILAKSNGELVERVVRLAKELGREIATPDEARQILSLKK", "sequence_length": 272, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d3e515eb5cbc4fedd036ecd2398273cb168e49dc315f5704f825e0c53ed2ba38", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8RHX2.json", "taxon_id": "190304", "uniprot_accession": "Q8RHX2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhizobium meliloti (strain 1021)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bkace-pf05853.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05853", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bkace-pf05853.yaml" } ], "pfam_ids": [ "PF05853" ], "protein_name": "3-dehydrocarnitine:acetyl-CoA trimethylamine transferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLSMNREVFITCAVTGAGDTVSKSSHVPVTPKQIAESAIEAAKAGAAVVHCHVRDPETGAPARRLDLYREVTDRIRSADIDVVLNLTAGMGGDLVFGNVESPFPVDEKGTDMAGATERVAHVAECLPEICTLDCGTMNFSLGDYVMTNTPSMLREMARQMTALGVRPEIEAFDTGHLWFAKQLAEEGLIEDPVLIQLCMGIPWGAPDDLNTFMAMVNNVPSNWTFSAFSIGRNAMAYPAAAVLAGGNVRVGLEDNLYVGKGQLATNAQLVEKAVSVVESMGAKIIGPEEVRRKLKLTKR", "sequence_length": 300, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5b9f78a9361e256dd441c1325c9359cbe41f23e0b82824c788468ae3ff155e19", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q92NF6.json", "taxon_id": "266834", "uniprot_accession": "Q92NF6", "uniprot_release": "2026_03" } ], "pfam_id": "PF05853", "short_name": "BKACE", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf851-pf05867.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf851-pf05867.yaml" } ], "pfam_ids": [ "PF05867" ], "protein_name": "Uncharacterized protein C45G9.8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRLLVCFGFFSFTYFFSRKGTRSYFRWVSTETSNNTRSKCHKLKSESIMTTSLLSRMQIDRDLRRSTEHVEIVPQETCVHHESPDSVLTECATMSTSTHVMPNSSSTISKSATEKKTKTGSKKVTRSKKSKKTKRRSSTTVTTTTISNSKPVTPDKDKDSKDQRKQRTKRKDPFEKEWFGKECDDVTRCKVPIQEFKIAEVQLRPRIEEDQNIEVTSRDIDEADMERICKKFAKEKINPITMAEPIDEKTKILLDRVTKKPYPLKYNNEKGLLLFDERSSFYKSREKKKAEKSESNLEEDTYGQVPKLKDVQRLPPQNVFSRPGVPFWAVTLLPTEEDLVDVDPSISVGTEHLEMYHLKQVPLQTIKKSKLILNALQPLSILEDRDDIHFTPELVFSNTIRSLVHAQEMEGKRNESKSDDEGKSDKSLSFVIEKQEEFIYSRANPIETARMARRNRRSKGSSSKK", "sequence_length": 465, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95117061f8c7b38576f76d5b9285e682ff44bca1f7ff76d192e003658d429914", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q09280.json", "taxon_id": "6239", "uniprot_accession": "Q09280", "uniprot_release": "2026_03" } ], "pfam_id": "PF05867", "short_name": "DUF851", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/escrt-ii-pf05871.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05871", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/escrt-ii-pf05871.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/escrt-ii-complex-vps25-subunit-n-terminal-winged-helix-ipr014041.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR014041", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/escrt-ii-complex-vps25-subunit-n-terminal-winged-helix-ipr014041.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/winged-helix-dna-binding-domain-chain-c-domain-1-1-10-10-570.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.10.570", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/winged-helix-dna-binding-domain-chain-c-domain-1-1-10-10-570.yaml" } ], "pfam_ids": [ "PF05871" ], "protein_name": "Vacuolar protein-sorting-associated protein 25", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSALPPVYSFPPLYTRQPNSLTRRQQISTWIDIISQYCKTKKIWYMSVDGTVINDNELDSGSTDNDDSKKISKNLFNNEDIQRSVSQVFIDEIWSQMTKEGKCLPIDQSGRRSSNTTTTRYFILWKSLDSWASLILQWFEDSGKLNQVITLYELSEGDETVNWEFHRMPESLLYYCLKPLCDRNRATMLKDENDKVIAIKVV", "sequence_length": 202, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0adcc27477d9d9e1e6532c51265391864592b03f08312f1c9f8f6bab3f76e21a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47142.json", "taxon_id": "559292", "uniprot_accession": "P47142", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/escrt-ii-complex-go0000814.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000814", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/escrt-ii-complex-go0000814.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/bicoid-mrna-localization-go0045450.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0045450", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/bicoid-mrna-localization-go0045450.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/imaginal-disc-derived-male-genitalia-morphogenesis-go0048803.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0048803", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/imaginal-disc-derived-male-genitalia-morphogenesis-go0048803.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"MDNNEIIGYTIGETRIDELTFLAKEAPKVGDYVKINYDDSELLGMVESTIQGNMALEDILNIEHLEKIREFEDNSSYYILGKIKVLGDIRDLNKDGALKLPRVPPKPGIPIYRADDELLKKVFGNGHLKIGHLVTREDVEVKLDANKLCSRHLAILAMTGMGKSNTVAVLLRELNKLKATVLVFDMHGEYKDIYCESEKLRVHIIEPKINIYRINDDDLCDLAGVDAQATKQRPYIRKAIKEIKEERKEHDFSTVDDYINAIIGKLEEYKSNDNYKKDESSIQTAIFRLEDMLQFRKNIITLHYNPINDIREHYINIIPMEELDENAVDIVVSYIAKAVLDDRKRIIIDKGRDFAKPIFMIFEEAHLIAPQHRKTRAKHYLSRIAREGRKFGVGLCLVSQRPKTLDAETLSQCSNLIISKLIEPTDQKHVQMASENLSEDLVKQLTSLNIGEAIILGPCIKVPAIVKVDKFDGRYGGEDLNLVELWEKDFINTERLKTDDIEENAFGDDDLFS", "sequence_length": 513, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "94d7250fd3ab31a3d837ee4e539e26b7e8a87622c3bb657cbd3b65c9803e9932", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58960.json", "taxon_id": "243232", "uniprot_accession": "Q58960", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/helicase-hera-barrel-domain-ipr018538.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018538", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/helicase-hera-barrel-domain-ipr018538.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/helicase-hera-central-domain-ipr002789.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002789", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/helicase-hera-central-domain-ipr002789.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/helicase-hera-like-c-terminal-ipr033186.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033186", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/helicase-hera-like-c-terminal-ipr033186.yaml" } ], "pfam_ids": [ "PF01935", "PF05872", "PF09378" ], "protein_name": "Probable helicase MJECL08", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMVINSVVVGTVVASKNVNEFEFVIENQVIDKIKKGEFVITKNTHGDYLLSKITKIVSVNALIGDKSEDASELAKIRGVIYSEEMLNNSSKFLASAKILGVINNESGSIESNVYPINVPQNVYLTKDDLLAKIFSNGSIEVGYLKVRSSTKVKLNAKELCSRHFAVLAMTGAGKSNTIAVLVQELFEKDKGKMNIVIVDPHGEYVKMRNTHILPAKLNPILVPEEHLAKLLGIGENSSVQKSFLVYAALTVKYECKENKKQISGLEYLKKIEEKLVECADKIANSEDKKRIYIEYYDGTRCRXKTVKKDDEMSINRVIEKLRWFINKNKNILGENEGMFDIKSDKINVLPLQKIEDEEAITIVGEFLKRVLKERIKSVHDEIVEIKALEKPTLVIIEEAHLFAAKNLKDRSGYWINRIAKEGRKFGVGLGLVSQRPKELNPTVLSQMNTKIILRIVEPTDQKYILESSENVGEDLLQDLPQLSTGEAIVVGSSLPLPALVKIKKYDGVLGGEDGLKNLKI", "sequence_length": 520, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e1099f937c8aa55b7282f53fe8ac9a3e5f744c51ef7361402c60062d387e76e8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q60270.json", "taxon_id": "243232", "uniprot_accession": "Q60270", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hera-c-pf05872.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05872", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hera-c-pf05872.yaml" } ], "pfam_ids": [ "PF01935", "PF05872", "PF09378" ], "protein_name": "DNA double-strand break repair helicase HerA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEFVGIVRGEASFTSYEFSINPSANVSFGEFVVTKNRDGDLVLGTVRHVKNVNWLLSSVKSNFNSLALDIEEYGESLGENEEVVATVRILGKIEGNELVPNRVPIRNGEYVYKASDDLLQMIYGNDGIEIGTLLLRPNVRIKLDVNELVSRHFAVLAVTGAGKSNAVAVIIKGIVEDVGGTVVVLDPHGDYVNLRLPETGIDLVNIIDGKIRIEDLDPEELADLIGISSSAQIQRHFLSLAWETVKHKNQSLGGESLLEALLDLLNEWISRKTIKYWSEKEGRMKSEDLKSERIETIRGIIFRIRRFLRNYGNIVTSENLVAAIKPGMVNVIDLSPLDENQMKVVVGKFLEAVFEKRVEYEMARKRFEKETSKKKRDEYEEIMTEIESKYPALAYPILVIVEEAHIFAPQGEENDAMRIMGRIAREGRKFGVGLGVVSQRPSKLNEDILSQMNTKIILRIVNPRDQDYVLKASEQLSKDLMDDIAGLGKGEAVIVGQAIKLPALVRIYNFKELRGKAGTGQYGGEDIGILDRWNKMKRNMVNSLDIDIDF", "sequence_length": 551, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b8975160773dbcfb4c60bdde0bc96642bfac502958499c46d4669ec06ef18388", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8U1P0.json", "taxon_id": "186497", "uniprot_accession": "Q8U1P0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf87-pf01935.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01935", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf87-pf01935.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/has-barrel-pf09378.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09378", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/has-barrel-pf09378.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hera-c-pf05872.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05872", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hera-c-pf05872.yaml" } ], "pfam_ids": [ "PF01935", "PF05872", "PF09378" ], "protein_name": "DNA double-strand break repair helicase HerA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIIGYVVGSATTQEANVLLEKKVRSGYYVTLEYDDEKVLGLVTLITTGSPLVDDSLNDIELVQRIKQMGNKIPIYMKAKVKLLCKLDGKLSQPDLPPVAGTPVRLATNEELSTIFSEGTIRIGKLIGSDVEVRIRVNALTRHLAILAATGSGKSNTVAVLSSRLSEVFGSVLIFDYHGEYYESEIKNLNNIEPKINPLNLTPDEFATLLEIRENATIQYRILRRAFKSFLEETKEKLKNGNVNYNELNNNFRNLILKKVDEVSKNEKRKDSKDEVINKIEDFLDRYSEIIDFTAGDVVDKIKIGKVNVINLSSLDEDAIDAIVSHYLRKILTSRKENKMKRKIGLKFPVLVVIEEAHVLLSKDSNTLTKHWAGRIAREGRKFGVGLIIVSQRPKGIDENILSQMTNKIILKMVEPSDKKYVLETSDNLSEDIVEGLSALDTGEAVIVGNIVRMPAIVKIDKFEGKLAGSDPNLIEEWKKAKEEIEEHADVLNWGE", "sequence_length": 495, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "093d86cf4bba881b94c29aa485a029f79785881f18424cc7dca446fa4766dbb7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96YR7.json", "taxon_id": "273063", "uniprot_accession": "Q96YR7", "uniprot_release": "2026_03" } ], "pfam_id": "PF05872", "short_name": "HerA_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/baculo-ring-pf05883.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/baculo-ring-pf05883.yaml" } ], "pfam_ids": [ "PF05883" ], "protein_name": "Uncharacterized 17.0 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLTVYLKDKQYYLFKLFREIWPSCTTECRICLETLGTEGGVVGVPDNGLLNLDKMFHAECIERWKRGRNRDPFNRAIKYYFAFPPPTLHECKALLEHTRGFIGDDEMDRVYSLVHQRVTTEDALDVELNFARFFKDDARAVGGGQ", "sequence_length": 146, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2f164f2749f1a79920b5dad71d2696169b579ca1a20769917b54a5c5d4d14bdd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10310.json", "taxon_id": "262177", "uniprot_accession": "O10310", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/baculo-ring-pf05883.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/baculo-ring-pf05883.yaml" } ], "pfam_ids": [ "PF05883" ], "protein_name": "Protein AC53", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFCTFCLKDRNYYMFKLFKDYWPTCTTECQICLEKIDDNGGIVAMPDTGMLNLEKMFHEQCIQRWRREHTRDPFNRVIKYYFNFPPKTLEECNVMLRETKGSIGDHEIDRVYKRVYQRVTQEDALDIELDFRHFFKMQS", "sequence_length": 139, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6b5890015ffbeff87c50f3f56714bee5e0ce681dc9aeb2d2561ffd2a2adce061", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41457.json", "taxon_id": "46015", "uniprot_accession": "P41457", "uniprot_release": "2026_03" } ], "pfam_id": "PF05883", "short_name": "Baculo_RING", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05884", "short_name": "ZYG-11_interact", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/n-terminal-protein-amino-acid-methylation-go0006480.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0006480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/n-terminal-protein-amino-acid-methylation-go0006480.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/methyltransf-pk-pf05891.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05891", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/methyltransf-pk-pf05891.yaml" } ], "pfam_ids": [ "PF05891" ], "protein_name": "N-terminal Xaa-Pro-Lys N-methyltransferase 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAHLGAHFAFRSRWQKTDDELCRHSMSFILHKAIRNDFFQSYLYLLEKIPLVKLYALTSQVIDGEMQFYARAKLFYQEVPATEEGMMGNFIELSNPDIQASREFLRKFVGGPGRAGTGCALDCGSGIGRVSKHVLLPVFSSVELVDMMESFLLEAQSYLQVNEDKVESYHCYSLQEFTPHLGRYDVIWIQWVSGYLTDKDLLAFLSRCRDGLKENGVIILKDNVAREGCIFDLSDSSVTRDMDILRSLIRKSGLVVLGQEKQEGFPEQCVPVWMFALHSDRHS", "sequence_length": 283, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d63b708a1f642d4d983958a53268042cd6e216eaa83e6fa603f6a8df4ab4501c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B2RXM4.json", "taxon_id": "10090", "uniprot_accession": "B2RXM4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/n-terminal-protein-n-methyltransferase-activity-go0071885.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071885", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/n-terminal-protein-n-methyltransferase-activity-go0071885.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/n-terminal-peptidyl-proline-dimethylation-go0018016.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0018016", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/n-terminal-peptidyl-proline-dimethylation-go0018016.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/methyltransf-pk-pf05891.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05891", "section": "canonical_examples", "url": 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"ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cxxc-zn-b-euk-pf05907.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05907", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cxxc-zn-b-euk-pf05907.yaml" } ], "pfam_ids": [ "PF05907" ], "protein_name": "UPF0587 protein YCR090C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLFLVLKATLSENVTKVSIENTNESRAEFAFDLQCTSCRELHDSKVIINTFEEYAMPASKGTASFLMKCKFCSKELSVNLCAFEDEYLTDQSDDKWAKIKDVRKKHGLSKVKEDSFIPLSLDCRGCELIKFYPDTITFEVSLSSGKVMSCQLEDNEWYDYDDNLGEEVTMTDFSSSIIKGK", "sequence_length": 182, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f205d503a70f1fff08c7e21f56e81ba680344ea8ba08ab8ee504fed76546e35", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P25654.json", "taxon_id": "559292", "uniprot_accession": "P25654", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cxxc-zn-b-euk-pf05907.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05907", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cxxc-zn-b-euk-pf05907.yaml" } ], "pfam_ids": [ "PF05907" ], "protein_name": "CXXC motif containing zinc binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKIELQLKATLENVTNLRPVGEDFRWYLKMKCGNCGEISEKWQYIRLMDSVALKGGRGSASMVQKCKLCSRENSIEILSSTIKSYNAEDNEKFKTIVEFECRGLEPVDFQPQAGFAAEGVESGTVFSDINLQEKDWTDYDEKAQESVGIYEVTHQFVKC", "sequence_length": 160, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ff33fd0e9e87a11d581330ce3c78e96bb2f3548f6b576695d50a70adc5703204", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q32P66.json", "taxon_id": "9913", "uniprot_accession": "Q32P66", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cxxc-zn-b-euk-pf05907.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05907", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cxxc-zn-b-euk-pf05907.yaml" } ], "pfam_ids": [ "PF05907" ], "protein_name": "CXXC motif containing zinc binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKIALQLKATLENITNLRPVGEDFRWYLKMKCGNCGEISDKWQYIRLMDSVALKGGRGSASMVQKCKLCARENSIEILSSTIKPYNAEDNENFKTIVEFECRGLEPVDFQPQAGFAAEGVESGTAFSDINLQEKDWTDYDEKAQESVGIYEVTHQFVKC", "sequence_length": 160, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "402d4a1a44cd87eec2b48f3cdb9ba276732f52448cea8431cd363bb68ff050f6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NWV4.json", "taxon_id": "9606", "uniprot_accession": "Q9NWV4", "uniprot_release": "2026_03" } ], "pfam_id": "PF05907", "short_name": "CXXC_Zn-b_euk", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gamma-pga-hydro-pf05908.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05908", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gamma-pga-hydro-pf05908.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/poly-gamma-glutamate-hydrolase-zinc-binding-motif-superfamily-ipr038128.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038128", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/poly-gamma-glutamate-hydrolase-zinc-binding-motif-superfamily-ipr038128.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/poly-gamma-glutamate-hydrolase-zinc-binding-motif-3-40-630-100.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.630.100", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/poly-gamma-glutamate-hydrolase-zinc-binding-motif-3-40-630-100.yaml" } ], "pfam_ids": [ "PF05908" ], "protein_name": "UPF0714 protein YmaC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRFLLNVILVLAIVLFLRYVHYSLEPEPSNQPDTYSNFSSLAENESPADYDISYNEKKGSKVLIMSPHGGRIEGGVSELVRYFNNEYSTYLFEGLKSHDNQTLHITSTNFDEPLAKKKIKEHQYVVAFHGYKGENKNTLVGGTDRKRAKMIVRALERRGFSAELASSKSGLAGLNAENINNQGETGLSIQLEISREQREAFFDDFYYKNRKYTKNSEFYAYVSAIKGVLEKEYS", "sequence_length": 235, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7de4fa38e05102d4afbf8ac9212fb905c8a66b6ed13d9e7f90562d976b45a64a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31789.json", "taxon_id": "224308", "uniprot_accession": "O31789", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gamma-pga-hydro-pf05908.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05908", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gamma-pga-hydro-pf05908.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/poly-gamma-glutamate-hydrolase-zinc-binding-motif-superfamily-ipr038128.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038128", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/poly-gamma-glutamate-hydrolase-zinc-binding-motif-superfamily-ipr038128.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/poly-gamma-glutamate-hydrolase-zinc-binding-motif-3-40-630-100.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.630.100", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/poly-gamma-glutamate-hydrolase-zinc-binding-motif-3-40-630-100.yaml" } ], "pfam_ids": [ "PF05908" ], "protein_name": "UPF0714 protein YndL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKPAKVSLLRRLLHSLKHVDCNIAKRFPSTIKIVKLLMIFMVFTPISSIYAEDVYQNFEELKNNEDPSDYGVVTKETGSPVLVLAIHGGGIEGGTSEVARELSKEYSMYLFEGLKSAGNSVLHITSTHFDEPRALKMTGNHEYVISLHGYAEEDQQIEVGGTDRVRAADLVEKLQHAGFPAVLLNMDHPHAGVSPNNIANKSKTGLSIQIEMSTGFRKSLFGIFSLKSRAVTQNERFYEFTEVMFRFLKNSY", "sequence_length": 252, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7c0047cb443713f30995778f98cfa842ae6978b50718233fb6f25c1ff27f7379", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31815.json", "taxon_id": "224308", "uniprot_accession": "O31815", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/poly-gamma-glutamate-hydrolase-zinc-binding-motif-superfamily-ipr038128.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038128", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/poly-gamma-glutamate-hydrolase-zinc-binding-motif-superfamily-ipr038128.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/poly-gamma-glutamate-hydrolase-zinc-binding-motif-3-40-630-100.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.630.100", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/poly-gamma-glutamate-hydrolase-zinc-binding-motif-3-40-630-100.yaml" } ], "pfam_ids": [ "PF05908" ], "protein_name": "SPbeta prophage-derived UPF0714 protein YoqZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKFKNRIVEKRVKGAEKASFGGPVLLYRTLRKVTKLYKYITDKKSFPILVTSLFALFNPNSVLAADKYSNFEELKENESPLSYNILTTDVDRRVLILAPHGGGIEGGTSELARELSKSYSAYLFEGLRIPGASELHITSTNFDEPQALDLLSKHDLTISIHGYASSKKHTLVGGTDREKAAKITSLLTDAGFSAELLSEDSRLAGTNEQNIANKNSTGMSIQLEISTEQRREMFNTFTLAGRNGTQNQVFYDYIAVLTKFINENVYCMAGVAP", "sequence_length": 274, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c5908ac7c808188c996f58bf69ef6b8aee923631144284141c38fd4952f7e2a8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31913.json", "taxon_id": "224308", "uniprot_accession": "O31913", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gamma-pga-hydro-pf05908.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05908", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gamma-pga-hydro-pf05908.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/poly-gamma-glutamate-hydrolase-zinc-binding-motif-superfamily-ipr038128.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038128", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/poly-gamma-glutamate-hydrolase-zinc-binding-motif-superfamily-ipr038128.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/poly-gamma-glutamate-hydrolase-zinc-binding-motif-3-40-630-100.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.630.100", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/poly-gamma-glutamate-hydrolase-zinc-binding-motif-3-40-630-100.yaml" } ], "pfam_ids": [ "PF05908" ], "protein_name": "UPF0714 protein YjqB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDMYDSFAALSASESEYRIIYEEKNGSELIVLGPHGGRIEPGVSELVRAFSDRCSIYLFEGLKQRNNRSLHLTSIRFDEPLALEKVNDHHYALAFHGYYDPKIPHTLVGGADRKKAKLICERLNEAGFSAELTNEKDRLAGVHPNNIVNRTKREMGLQLEVSTAQRNALFRNFGCRDKSYIQNDLFDRYVEAVKLGFYT", "sequence_length": 200, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f0877ef3b1b45499b3e10817bf7e9a3fdaf10b5936e7587fa423f380c3ec2080", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34785.json", "taxon_id": "224308", "uniprot_accession": "O34785", "uniprot_release": "2026_03" } ], "pfam_id": "PF05908", "short_name": "Gamma_PGA_hydro", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05910", "short_name": "DUF868", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fpp-pf05911.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fpp-pf05911.yaml" } ], "pfam_ids": [ "PF05911" ], "protein_name": "Filament-like plant protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDRKSWPWKKKSSEKTATVTEVVDQENGKKPSYIQISFDQYTNLNGLKDEVKSYEEKVTKLEDQIKDLDLKLSTANADIVAKEVLVKQHSKVAEEAVTGWEKAEAEASALKTHLETITLAKLTVEDRAAHLDGALKECMRQIRSLKEENEQKLHDVIATKTNQMDNLRAEFESRIGEYEEELLRCGAENDALSRSLQERSNMLMRISEEKSQAESEIEHLKNNIESCEREINTLKYETHVITKELEIRNEEKNMSMRSAEAANKQHLEGVKKIAKLEAECQRLRTLVRKKLPGPAALAQMKMEVESLGFGDHRQDHRQRRSPVRPSSPLMSPMSHMSQVSEFSLDNMQKFHKENDLLTERLLAMEEETKMLKEALAKRNSELQVSRNLCAKTANRLQTLEAQMMSKSPTKRGFEMPAEIFSRQNASNPPSMASMSEDGNEDARSVAGSLMSELSQSNKDKANAKIKKTESANQLELMDDFLEMEKLACLPNGSNANGSTDHSSADSDAEIPPATQLKKRISNVLQSLPKDAAFEKILAEIQCAVKDAGVKLPSKSHGANLNGLTEEKVIAMSNETTEEKVTIVEVITQELSDALSQIYQFVTYLSKEATACSENRTFSQKVQEFSTTFEGVLGKEKTLVDFLFDLSRVLVEASELKIDVLGFHTSTVEIHSPDCIDKVALPENKALQKDSSGEHYQNGCSQSSDSEIPDDCNGTSGYEPKLATCKFTTEEFEGLKLEKEKAESNLASCEADLEATKTKLQETEKLLAEVKSDLESAQKSNGMGETQLKCMVESYRSLETRSSELEIELTSLKGKIENLEDELHDEKENHREALAKCQELEEQLQRNNQNCPNCSVIEDDPKSKQDNELAAAAEKLAECQETILLLGKQLKSMCPQTEQVASSPSQEQQALNPEEEEYATSTNPQDSKLSSPSDKDTPSMNTMKSPVASKHRHTKSNSSSSSSGLTPEKHSRGFSRFFSTKAK", "sequence_length": 982, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc2812338c1b1459b80c78463f1b2f538bfd21c37dd109fd17cc356a7c97a5ff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0WSY2.json", "taxon_id": "3702", "uniprot_accession": "Q0WSY2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fpp-pf05911.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fpp-pf05911.yaml" } ], "pfam_ids": [ "PF05911" ], "protein_name": "Filament-like plant protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDRRSWLWRRKSSEKSPGETESTGSVSSHSERFSDDQRSQSPELNSKPVTREEEATADIKILTERLSAALLNVSLKEDLAKQHAKVAEEAVSGWEKAENEAAALKQQLDASTSKVSALEDRNSHLDSALKECVRQLWQGREEQNQKIEEAINNKCKEWETTKSQLEARIEELQARQDVTTSSVHEDLYPKLEALEKENSALKLQLLSKSEEVKIRTIERDLSTQAAESASKQQLEGIKKLTKLEAECRKLRVMVRRSDNSSDLKSSIDNQSDYSGRVSFSDNEMQSPSEKIIGKSSMATSVDIGLMDDFLEMEKLAALPHSEPGRKHSESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALNGSKEQIEALQSRLKEIEGKLSEMKKLEAENQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLELTMCLNGTKKQLETSQNRLKETERKLTELQTLLHLTKDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSAKHNSKCNELQDEISKLKQELEHHQETEPAPNHIKGFELKQEKELAVAASKFAECQRTIASLGQRLQSLATFEDFLIES", "sequence_length": 615, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "06e665a7ab8ffed54523f57dcb0e40e0310794c479e69e549489efa3ef48f3a6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9MA92.json", "taxon_id": "3702", "uniprot_accession": "Q9MA92", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fpp-pf05911.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fpp-pf05911.yaml" } ], "pfam_ids": [ "PF05911" ], "protein_name": "Filament-like plant protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMTGTTLILEPVMDSKDELVKQHAKVAEDAVAGWEKAENEVVELKQKLEDAADKNIVLEDRVSHLDGALKECVRQLRQFRDEQEKNIQAAVTESTKELHSANTGLEKRVLELQKEAEAAKSENMMLRREFLTQREDLEIVMIERDLSTQAAETASKQHLDIIKKLAKLEAECRKLRILAKTSSSLSSNQSVDSHSDGGRERVEGSCSDSWASSAFISELDQIKNEKGGNRSLQGTTSSTEIDLMDDFLEMERLVALPTETQAKNSKDGYELSLMEKLEKIQAEKDDLEREVKCCREAEKRLSLEIEAVVGDKMELEDMLKRVEAEKAELKTSFDVLKDKYQESRVCFQEVDTKLEKLQAEKDELDSEVICCKEAEKRFSLELEAVVGDKIEMEDELEKMEAEKAELKISFDVIKDQYQESRVCFQEVEMKLEAMKRELKLANESKTQAESRVTRMEAEVRKERIVSDGLKEKCETFEEELRREIEEKTMIKREKVEPKIKQEDIATAAGKFADCQKTIASLGKQLQSLATLEEFLIDTASIPGSARSVHNKEALLGKDPHECIKTINGRSLEFLAIQNSNNKTSPPCSSSSDSTTVSLIMSSNRGSSEKNRNGFATVFTRSRNSVNLGI", "sequence_length": 629, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b6ce887b6b7c6c0c479bf25768c4f2e1d0fc5f672afc1614d6b689872d5426db", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SFF4.json", "taxon_id": "3702", "uniprot_accession": "Q9SFF4", "uniprot_release": "2026_03" } ], "pfam_id": "PF05911", "short_name": "FPP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf870-pf05912.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05912", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf870-pf05912.yaml" } ], "pfam_ids": [ "PF05912" ], "protein_name": "Uncharacterized protein B0416.7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLSTAIISCLCIGVLSYENKFQFTGTVYCKSNAPWCVRIRVIEVDTLVDDGVASVDFCSNEVTQTYDIGGVQENDGLLDRNFELQMVVFHNCSRNTETVFKTGIWRIPLPKAPTVHAPIRQHLNLNTNNSQ", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "077691f217688b900395f3751c07924a5019795d9c791b9fc6026b9337398465", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q11074.json", "taxon_id": "6239", "uniprot_accession": "Q11074", "uniprot_release": "2026_03" } ], "pfam_id": "PF05912", "short_name": "DUF870", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05913", "short_name": "MupG_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem-230-134-pf05915.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05915", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem-230-134-pf05915.yaml" } ], "pfam_ids": [ "PF05915" ], "protein_name": "Transmembrane protein 230", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMPSRTNLATGLPSSKVKYSRLASTDDGYIDLQFKKSPPKIPYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD", "sequence_length": 120, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87774af313e7e3ecb572ad1adad854d3664b09223a535042a4b7ed28b603d117", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CIB6.json", "taxon_id": "10090", "uniprot_accession": "Q8CIB6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem-230-134-pf05915.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05915", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem-230-134-pf05915.yaml" } ], "pfam_ids": [ "PF05915" ], "protein_name": "Transmembrane protein 134", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAARPQFSIDDAFELTLEDAGPEPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNLENDEDGAQASPEPDGGVSTRDSGHMSVRSSQWSFSTISSSTQRSYNACCSWTQHPLIQKNRRVVLASFLLLLLGLVLILVGVGLEVAPSPGVSSAIFFVPGILLLVPGVYHVIFIYCAVKGRRGFQFFYLPYFEK", "sequence_length": 195, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f99eb4a3a59ede70166edf022296887f95f5563bd22e30018708bb7a0c6e545c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R0J4.json", "taxon_id": "10090", "uniprot_accession": "Q8R0J4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem-230-134-pf05915.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05915", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem-230-134-pf05915.yaml" } ], "pfam_ids": [ "PF05915" ], "protein_name": "Transmembrane protein 230", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD", "sequence_length": 120, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb0bded3f854435ee4c631cec177655d5ee8aa3faf3be66202279f958f69c3d9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96A57.json", "taxon_id": "9606", "uniprot_accession": "Q96A57", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem-230-134-pf05915.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05915", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem-230-134-pf05915.yaml" } ], "pfam_ids": [ "PF05915" ], "protein_name": "Transmembrane protein 134", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNLENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFLLLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLPYFEK", "sequence_length": 195, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "22c5fd0a9a388320357b24d85cb9ec95c4556d72b907be4a9d92a25d2bed482d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H6X4.json", "taxon_id": "9606", "uniprot_accession": "Q9H6X4", "uniprot_release": "2026_03" } ], "pfam_id": "PF05915", "short_name": "TMEM_230_134", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 17, "discovery_scanned": true, "example_count": 17, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/alpha-helical-domain-of-gins-complex-protein-psf2-partner-of-sld5-2-ps-cd11712.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd11712", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/alpha-helical-domain-of-gins-complex-protein-psf2-partner-of-sld5-2-ps-cd11712.yaml" }, 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"InterPro:IPR056784", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dna-replication-complex-gins-protein-psf2-n-terminal-domain-ipr056784.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/psf2-n-pf25005.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25005", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/psf2-n-pf25005.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-58-1020-1-20-58-1020.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.1020", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-58-1020-1-20-58-1020.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-40-5-50-3-40-5-50.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.5.50", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-40-5-50-3-40-5-50.yaml" } ], "pfam_ids": [ "PF05916", "PF25005" ], "protein_name": "Probable DNA 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"data/traits/sequence/domain/cdd/macrolide-efflux-protein-a-and-similar-proteins-of-the-major-facilitat-cd06173.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd06173", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/macrolide-efflux-protein-a-and-similar-proteins-of-the-major-facilitat-cd06173.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mfs-3-pf05977.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05977", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mfs-3-pf05977.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P24077", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05977" ], "protein_name": "Enterobactin exporter EntS", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a7cc64c1fbb74d6af039c7f4cd2c86b4d7166dc27041b7a389248d3d2106b4af", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNKQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQIQMMTHSTWQVGLSVTLTGGAMFVGLMVGGVLADRYERKKVILLARGTCGIGFIGLCLNALLPEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPMIGGLLLATGGVAWNYGLAAAGTFITLLPLLSLPALPPPPQPREHPLKSLLAGFRFLLASPLVGGIALLGGLLTMASAVRVLYPALADNWQMSAAQIGFLYAAIPLGAAIGALTSGKLAHSARPGLLMLLSTLGSFLAIGLFGLMPMWILGVVCLALFGWLSAVSSLLQYTMLQTQTPEAMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLVELRHFRQTPPQVTASDS", "sequence_length": 416, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a7cc64c1fbb74d6af039c7f4cd2c86b4d7166dc27041b7a389248d3d2106b4af", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P24077.json", "taxon_id": "83333", "uniprot_accession": "P24077", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain NCTC 8325 / PS 47)", "origins": [ { "cited_uniprot_accession": "Q2FW71", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/unclassified/staphyloferrin-a.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:84711", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/unclassified/staphyloferrin-a.yaml" } ], "pfam_ids": [ "PF05977" ], "protein_name": "Staphyloferrin A transporter", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKYFFSSSFLLFLGNWIGQIGLNWFVLTTYHNAVYLGIVNFCRLVPILLLSVWAGAIADKYDKGRLLRITISSSFLVTAILCVLTYSFTAIPISVIIIYATLRGILSAVETPLRQAILPDLSDKISTTQAVSFHSFIINICRSIGPAIAGVILAVYHAPTTFLAQAICYFIAVLLCLPLHFKVTKIPEDASRYMPLKVIIDYFKLHMEGRQIFITSLLIMATGFSYTTLLPVLTNKVFPGKSEIFGIAMTMCAIGGIIATLVLPKVLKYIGMVNMYYLSSFLFGIALLGVVFHNIVIMFICITLIGLFSQWARTTNRVYFQNNVKDYERGKVLSIIMMDRGMIPLGSLLMSICADVFGIVRTFSIMGISTICITMVFYFINRKLKLKLEESNHGIS", "sequence_length": 397, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb703c5277ba7457bae933d3a82adbbc7074f1775316ed09a6be03c17a9887f7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2FW71.json", "taxon_id": "93061", "uniprot_accession": "Q2FW71", "uniprot_release": "2026_03" } ], "pfam_id": "PF05977", "short_name": "MFS_3", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 9, "discovery_scanned": true, "example_count": 9, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/unc93-like-major-facilitator-superfamily-domain-containing-protein-11--cd17407.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd17407", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/unc93-like-major-facilitator-superfamily-domain-containing-protein-11--cd17407.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/unc-93-pf05978.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/unc-93-pf05978.yaml" } ], "pfam_ids": [ "PF05978" ], "protein_name": "UNC93-like protein MFSD11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSPESKKLFNIIILGVAFMFMFTAFQTCGNVAQTVIRSLNRTDFHGSGYTSMAIIYGVFSASNLITPSVVAIVGPQLSMFASGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDEHSIGRNSGIFWALLQSSLFFGNLYIYFAWQGKTQISESDRRTVFIALTVISLVGTVLFFLIRKPDSENVLGEDESSDDQDMEVNESAQNNLTKAVDAFKKSFKLCVTKEMLLLSITTAYTGLELTFFSGVYGTCIGATNKFGAEEKSLIGLSGIFIGIGEILGGSLFGLLSKNNRFGRNPVVLLGILVHFIAFYLIFLNMPGDAPIAPVKGTDSSAYIKSSKEVAILCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAIFKFVQSICAAVAFFYSNYLLLHWQLLVMVIFGFFGTISFFTVEWEAAAFVARGSDYRSI", "sequence_length": 449, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "71c91687bac5229c036c55ce5a02922dc7415523fe038a6d7a2445031df0e890", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O43934.json", "taxon_id": "9606", "uniprot_accession": "O43934", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uncharacterized-unc-93-like-proteins-of-the-major-facilitator-superfam-cd06178.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd06178", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uncharacterized-unc-93-like-proteins-of-the-major-facilitator-superfam-cd06178.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/unc-93-pf05978.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/unc-93-pf05978.yaml" } ], "pfam_ids": [ "PF05978" ], "protein_name": "UNC93-like protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNVRDEGKTTAEKHGGGEENKSPENKWRFNSPLAQVSLMGFVCFCCPGMFNALSGMGGGGQVDPTAANNANTAVYTAFTVFGLLGGGFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLGCGAGLLWAGEGAVMTSYPPPHRKGTYIALFWSIFNLGGVIGGLIPFILNYQRSSAASVNDSTYIAFMCFMFAGVLLSFGILPATSVIRNDGSRCSAVKYSRPSTEAAAVLRLFLDRKMLLIVPAAWASNFFYSYQFNNVNGLLFNLRTRGFNNVFYWGAQMAGSIAIGYVMDFSFKSRRARGFTGISLVAVIGTIIWAGGLANQHGYSLDKLPEKKLDFKDSGIEFAGPFVLYMSYGLLDAMYQSMVYWLIGALADDSQTLSRYSGFYKGVQSAGAAVAWQVDTRKVPLMSQLIVNWSLTTVSYPLLVLLVYFYVKNDNDDDSNDKV", "sequence_length": 459, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "af77fbdf2a1281fb87f3b7c43c60a698a6a2bfe36508fcfc8d231d6bcf079748", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q56WD3.json", "taxon_id": "3702", "uniprot_accession": "Q56WD3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/protein-unc-93-homolog-a-and-similar-proteins-of-the-major-facilitator-cd17406.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/unc-93-pf05978.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/unc-93-pf05978.yaml" } ], "pfam_ids": [ "PF05978" ], "protein_name": "N-acetylglucosamine transporter UNC93A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERSLKNVLVVSCGFLLLFTAYGGLQNLQSSLYSEQGLGVATLSTLYASVLLSSMFLPPILIKKCGCKWTIVGSMCCYVVFSLGNFHANWYTLIPTSILLGLGAAPLWSAQGTYLTTMGNLQAEKVGKLGKDVVNQYFGIFFLVFQSSGVWGNLISSLVFGKMSMQEAIPEEQLMSCGAKDCLMGPAATNSTHHPSQQLIYTLLGIYTGCGVLAILLVAVFLESLEDKLENEGERRPRPPPLWSTLLSTFMLFRDKRLCLLMFLPLYSGFQQEFLSGEYTKSYVTCALGIHFVGYVMICFSAMTALCSLLYGKISKYTGRAALYALGAAIHFSCIVVFLLWHPNTNQLPVFFVLSGLWGMSDAVWQTQNNALFGVLFEENKEPAFANYRLGEAIGFVIAFGYSSFLCVSTKLYILLGVLSLAMVGYGTVEYLEVKAASKVLGAEKKNQAEEEEMKTKI", "sequence_length": 458, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb17686f1c780a27ca2f1bcaabb3772945eb2a7487b74b47757b99060a067914", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q710D3.json", "taxon_id": "10090", "uniprot_accession": "Q710D3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/protein-unc-93-homolog-a-and-similar-proteins-of-the-major-facilitator-cd17406.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/unc-93-pf05978.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/unc-93-pf05978.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q86WB7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05978" ], "protein_name": "N-acetylglucosamine transporter UNC93A", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d045faf1cd80abc7c3f4d32ca745f8dc6c2b856ed86d8bb5b54eba7501684caa", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDRSLRNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPLLIERLGCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGNTHAEKAGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSLVFGQTPSQETLPEEQLTSCGASDCLMATTTTNSTQRPSQQLVYTLLGIYTGSGVLAVLMIAAFLQPIRDVQRESEGEKKSVPFWSTLLSTFKLYRDKRLCLLILLPLYSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFSATDALCSVLYGKVSQYTGRAVLYVLGAVTHVSCMIALLLWRPRADHLAVFFVFSGLWGVADAVWQTQNNALYGVLFEKSKEAAFANYRLWEALGFVIAFGYSMFLCVHVKLYILLGVLSLTMVAYGLVECVESKNPIRPHAPGQVNQAEDEEIQTKM", "sequence_length": 457, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d045faf1cd80abc7c3f4d32ca745f8dc6c2b856ed86d8bb5b54eba7501684caa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q86WB7.json", "taxon_id": "9606", "uniprot_accession": "Q86WB7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/unc93-like-major-facilitator-superfamily-domain-containing-protein-11--cd17407.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd17407", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/unc93-like-major-facilitator-superfamily-domain-containing-protein-11--cd17407.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/unc-93-pf05978.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/unc-93-pf05978.yaml" } ], "pfam_ids": [ "PF05978" ], "protein_name": "UNC93-like protein MFSD11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSPESKKLFNIVILGVAFMFMFTAFQTCGNVAQTVIRSLNSTDFHGSGYTSLAIIYGVFSASNLITPSVVAIVGPQISMFVSGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDEHTIGRNSGIFWALLQSSLFFGNLYIYFAWQGKTQISEHDRRTVFIALTVISLVGTVLFFLIRKPDPENVLGEEESCDDQDMEATESAQNNVTKAVDAFKKSLRLCVTREMLLLSVTTAYTGLELTFFSGVYGTCIGAVNKFGTEEKSLIGLSGIFIGIGEILGGSLFGLLSKNSRFGRNPVVLLGTLVHFVAFYLIFLNMPGDAPIAPVEGTNSIAYIRPSKEVAILCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAVFKFVQSICAAVAFFYSNYLLLHWQLLVMVIFGFFGTISFFAVEWDAAAIVARGSDYRSI", "sequence_length": 449, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7884ebe952110cf5d57be98b623eeb3e20c722c2f14b1640aca554c049f490c8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BJ51.json", "taxon_id": "10090", "uniprot_accession": "Q8BJ51", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uncharacterized-unc-93-like-proteins-of-the-major-facilitator-superfam-cd06178.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd06178", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uncharacterized-unc-93-like-proteins-of-the-major-facilitator-superfam-cd06178.yaml" } ], "pfam_ids": [ "PF05978" ], "protein_name": "UNC93-like protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNVRDEGKTTAEKHGGGEENKSPENKWRFNSPLAQVSLMGFVCFCCPGMFNALSGMGGGGQVDPTAANNANTAVYTAFTVFGLLGGGFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLGCGAGLLWAGEGAVMTSYPPPHRKGTYIALFWSIFNLGGVIGGLIPFILNYQRSSAASVNDSTYIAFMCFMFAGVLLSFGILPATSVIRNDGSRCSAVKYSRPSTEAAAVLRLFLDRKMLLIVPAAWASNFFYSYQFNNVNGLLFNLRTRGFNNVFYWGAQMAGSIAIGYVMDFSFKSRRARGFTGISLVAVIGTIIWAGGLANQHGYSLDKLPEKKLDFKDSGIEFAGPFVLYMSYGLLDAMYQSMVYWLIGALADDSQTLSRYSGFYKGVQSAGAAVAWQVDTRKVPLMSQLIVNWSLTTVSYPLLVLLVYFYVKNDNDDDSNDKV", "sequence_length": 459, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "af77fbdf2a1281fb87f3b7c43c60a698a6a2bfe36508fcfc8d231d6bcf079748", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LG53.json", "taxon_id": "3702", "uniprot_accession": "Q8LG53", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/protein-unc-93-homolog-a-and-similar-proteins-of-the-major-facilitator-cd17406.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd17406", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/protein-unc-93-homolog-a-and-similar-proteins-of-the-major-facilitator-cd17406.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/unc-93-pf05978.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/unc-93-pf05978.yaml" } ], "pfam_ids": [ "PF05978" ], "protein_name": "Putative potassium channel regulatory protein unc-93", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFQKMGDSNTWDLVGEQQQRKKSRSPSRASRVDSELLVGVENAAELEALGLGKEQLEEEARRHKKQRSKSPALENIRKTSIHLLQKFGAIPKKKDDSVLLFRFHDIPDIPLESLCIRPKEFFEEPKVFSFRDMGREQQKAEVNEKCSYLFRGTSFDHDDHFELPTETGRVPEYDHFCPIHGSRRRLPRNKLVTMQTLMHSVDDEDNEDLAYIYGHDFLAKLVRKKKREMMSGTEKERANKIKRKIMSNLWILSVAFLFLFTAFNGLQNLQTSVNGDLGSDSLVALYLSLAISSLFVPSFMINRLGCKLTFLIAIFVYFLYIVINLRPTYSSMIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFESQTTVIVRFFGYFFMIVHCGQVVGNMVSSYIFTLSYSQALRGPEDSIYDSCGYQFPKNLSDLTELAESNLARPPQKVYVAVCLAYLACVIISGMIMSMFLNALAKDARNRKMAQKFNSEIFYLMLKHLINIKFMLLVPLTIFNGLEQAFLVGVYTKAFVGCGLGIWQIGFVMACFGISDAVCSLVFGPLIKLFGRMPLFVFGAVVNLLMIVTLMVWPLNAADTQIFYVVAAMWGMADGVWNTQINGFWVALVGRQSLQFAFTKYRFWESLGIAIGFALIRHVTVEIYLLITFFMLLLGMCGFLAIENFDHIIKFWHHLIHTSCPEKEPLDDRNSDFE", "sequence_length": 705, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "951f1b17bd4e52535f1d3591f6cab81433999fa1176775e7a106c0e02dbf4e25", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q93380.json", "taxon_id": "6239", "uniprot_accession": "Q93380", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/unc-93-family-of-the-major-facilitator-superfamily-of-transporters-the-cd17338.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd17338", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/unc-93-family-of-the-major-facilitator-superfamily-of-transporters-the-cd17338.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/unc-93-pf05978.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/unc-93-pf05978.yaml" } ], "pfam_ids": [ "PF05978" ], "protein_name": "UNC93-like protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESRNDEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKDLGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPASLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLITLALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVDSLASLPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALDAVCSMTAGRFTSGLSSITFIVSGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIMAAILGIGDGILNTQISALLALLFKHDTEGAFAQLKVWQSAAIAIVFFLSPYISLQAMLIVMLVMRDFTVEETHFTSSLLFQNSLSRNSLRFRRCLTIKIWDSLPISWESSFSYW", "sequence_length": 464, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79930b19846f3f358002ea426ea125571f9463a212b2dffc7c094b5d795ab154", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q94AA1.json", "taxon_id": "3702", "uniprot_accession": "Q94AA1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/inorganic-ion-homeostasis-go0098771.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0098771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/inorganic-ion-homeostasis-go0098771.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/protein-unc-93-homolog-a-and-similar-proteins-of-the-major-facilitator-cd17406.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd17406", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/protein-unc-93-homolog-a-and-similar-proteins-of-the-major-facilitator-cd17406.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/unc-93-pf05978.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/unc-93-pf05978.yaml" } ], "pfam_ids": [ "PF05978" ], "protein_name": "UNC93-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGFTNAGFENDEPVKPKAGFEPDTASLREKVVLNPGEKWRILKNISIISIAFMVQFTAFQGTANLQSSINAKDGLGTVSLSAIYAALVVSCIFLPTLIIRKLTVKWTLVCSMLCYAPYIAFQLFPRFYTLVPAGILVGMGAAPMWASKATYLTQVGQVYAKITEQAVDAIIVRFFGFFFLAWQSAELWGNLISSLVLSSGAHGGGSSSNTTVSEEDLQFCGANFCTTGSGGHGNLERPPEDEIFEISMIYLSCIVAAVCIIAFFLDPLKRYGEKRKGSNSAAELSGLQLLSATFRQMKKPNLQLLIPITVFIGMEQAFIGADFTQAYVACALGVNKIGFVMICFGVVNALCSILFGSVMKYIGRTPIIVLGAVVHFTLITVELFWRPNPDNPIIFYAMSGLWGVGDAVWQTQINGLYGLLFRRNKEAAFSNYRLWESAGFVIAYAYATTLCTQMKLYILLAVLTLGCIGYVIVEILYRKKQRKLKKQEKLEAAEKEKEAAAAAAAAALAAAEAGADGVEETDDELDDLEEDIVVTRL", "sequence_length": 538, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d0bc7dc90d3c59c1f6031d23cfa4f2366f7f52a869d104dc46fe2bcb6180a622", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y115.json", "taxon_id": "7227", "uniprot_accession": "Q9Y115", "uniprot_release": "2026_03" } ], "pfam_id": "PF05978", "short_name": "UNC-93", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus pyogenes serotype M5 (strain Manfredo)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf896-pf05979.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf896-pf05979.yaml" } ], "pfam_ids": [ "PF05979" ], "protein_name": "UPF0291 protein SpyM50407", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDPKKIARINELAKKKKTVGLTGPEKVEQAKLREEYIEGYRRSVRHHIEGIKLVDEEGNDVTPEKLRQVQREKGLHGRSLDDPKS", "sequence_length": 85, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "48e22d63c45c31caa523bcf58efab55585576731275a9f7636d27ec86953d63e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2RD25.json", "taxon_id": "160491", "uniprot_accession": "A2RD25", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf896-pf05979.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf896-pf05979.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/helix-hairpin-bin-1-10-287-540.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.287.540", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/helix-hairpin-bin-1-10-287-540.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O31818", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05979" ], "protein_name": "UPF0291 protein YnzC", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "55d7ecb834c603058fd9d31e2a7f69d74072a86ff91e26063e9fa22facea7c9f", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MISNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKNTLKSVKIIDPEGNDVTPEKLKREQRNNKLH", "sequence_length": 77, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "55d7ecb834c603058fd9d31e2a7f69d74072a86ff91e26063e9fa22facea7c9f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31818.json", "taxon_id": "224308", "uniprot_accession": "O31818", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf896-pf05979.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf896-pf05979.yaml" } ], "pfam_ids": [ "PF05979" ], "protein_name": "UPF0291 protein SP_1473", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDPKKIARINELAKKKKTEGLTPEEKVEQAKLREEYIEGYRRAVRHHIEGIKIVDEEGNDVTPEKLRQVQREKGLHGRSLDDPNS", "sequence_length": 85, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a140ca44cbaa5819ff9788e75317468c46f514b912c45d54a4b4c9289904bf41", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q97PW7.json", "taxon_id": "170187", "uniprot_accession": "Q97PW7", "uniprot_release": "2026_03" } ], "pfam_id": "PF05979", "short_name": "DUF896", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05982", "short_name": "Sbt_1", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf898-pf05987.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05987", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf898-pf05987.yaml" } ], "pfam_ids": [ "PF05987" ], "protein_name": "Inner membrane protein YjgN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLFFVFFYFAILMTVSADMPLVGCVLTLLLLVLLIFMAAKGLRHQALMTSLNGVRFSFNCSMKGFWWVTFFLPILMAIGMGTVFFISTKMLPANSSSSVIISMVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRLTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGVMPSLPFL", "sequence_length": 398, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "da15a41f302767b95f4657f97bd47298121b835d27f1e1d65af5821df51019bb", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/P39338.json", "taxon_id": "83333", "uniprot_accession": "P39338", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf898-pf05987.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05987", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf898-pf05987.yaml" } ], "pfam_ids": [ "PF05987" ], "protein_name": "Inner membrane protein YjgN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFFSCLVFVFFYFAILMTVSADMPLIGCVLTLSLLVLLIFMAAKGLRYQALMTSLNGVRFSFNCSMKGVWWVTFFLPILMAIGMGTVFFISTKMLHANSSSSVIVSVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTAYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGIMPSLPFL", "sequence_length": 398, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c9ee7b6e43b2922ee9ac0b0667e20e185b835910a97a0efdfa259ca8064b2008", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P58219.json", "taxon_id": "83334", "uniprot_accession": "P58219", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf898-pf05987.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05987", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf898-pf05987.yaml" } ], "pfam_ids": [ "PF05987" ], "protein_name": "Inner membrane protein YjgN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNVISSKDNHNHTLVFTGKGGKYFVICLVNFLLTCITLGIYAPWAMVKCRRYIYTNMTLNNQPFAYKATGGALFISVLLVFIIYIVSLSLIEHGHPGLGFTLFGLLIAIIPFMAVKGLQYQAMMTSLNGVHFGFQCSMRRAWWYMFALPVLLMVALYIVLYIISLVTIAVGGLVFSIVFLGLLAIIGIGVINGITYSKWMTLFGNGANFGIHRFSIQVNVKTCIRGCVLAMLTLFPFAVVIGYLIAPVFTDMILLSMMGNAQAGGALILQYYGQIMACYFLYFLAIIVVTSYLYVALRNLFLNNLSLANDSIRFHSSVTAHGMLWRLLVVFVISGVTLGLAYPWLKIWLVSWLAQNTQVQGDLDSLELTNDEKPLENSPLMWISRGIMPYFPFI", "sequence_length": 395, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "33b9f4d9e1b0e5f8124c4ce26d98f839d01b808f5d230e35bd4c376c2111a4d3", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q08022.json", "taxon_id": "99287", "uniprot_accession": "Q08022", "uniprot_release": "2026_03" } ], "pfam_id": "PF05987", "short_name": "DUF898", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF05988", "short_name": "DUF899", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf900-pf05990.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05990", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf900-pf05990.yaml" } ], "pfam_ids": [ "PF05990" ], "protein_name": "Uncharacterized protein alr1448", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQIRFFATNRDRQNLGLNVDRDTRIKLLKFGYHWVDMKKYMAHYLATTDPSTMPPGVIIEDSEETVFNKFLKKEAVKHIIIGTHGYNVPFHGALTSFSILADTLKGALKKHNFTLIADPEEKIDIDNSNQNLIAFVGFSWPSNGKVLDYNSDRTECVQSAPALANLISYIRTKKPDIKIYVIAHSMGSYLVCHMLEQLVNQAFEPTELNEEIKNRLKRKDRGGENTFFVDRYFMLAPDVERREVTKCDLGGSEYTGPFYSGLEHLVQESHVFYSRYDNALKASVVEKDAIRESLQKGFELFTGPDLQKRWESSLGLNPLPALAPNNVYSHNATVLTNRQIDHGDYFDAPAIIDQIANIISEANTSRIPELPWRFSESSDRPLIE", "sequence_length": 384, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4cfa3d9cc9c9c40f11eefb9418c690ed49f600ab0e7086d07c260e8b59620535", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P29978.json", "taxon_id": "103690", "uniprot_accession": "P29978", "uniprot_release": "2026_03" } ], "pfam_id": "PF05990", "short_name": "DUF900", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/pin-domain-of-bacillus-subtilis-yacp-rae1-and-related-proteins-bacillu-cd10912.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd10912", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/pin-domain-of-bacillus-subtilis-yacp-rae1-and-related-proteins-bacillu-cd10912.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nyn-yacp-pf05991.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF05991", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nyn-yacp-pf05991.yaml" } ], "pfam_ids": [ "PF05991" ], "protein_name": "Ribosome-associated endoribonuclease 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDILLVDGYNMIGAWPQLKDLKANSFEEARDVLIQKMAEYQSYTGNRVIVVFDAHLVKGLEKKQTNHRVEVIFTKENETADERIEKLAQALNNIATQIHVATSDYTEQWAIFGQGALRKSARELLREVETIERRIERRVRKITSEKPAGKIALSEEVLKTFEKWRRGDLD", "sequence_length": 170, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "62ecac24df917cc7edf597057ba8e29187c6bca3f8deeec88ad16e0c753360c9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37574.json", "taxon_id": "224308", "uniprot_accession": "P37574", "uniprot_release": "2026_03" } ], "pfam_id": "PF05991", "short_name": "NYN_YacP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/creb-binding-pf09030.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/creb-binding-pf09030.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kix-pf02172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kix-pf02172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ring-cbp-p300-pf06001.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ring-cbp-p300-pf06001.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:B2RWS6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00439", "PF00569", "PF02135", "PF02172", "PF06001", "PF09030", "PF23570", "PF29847" ], "protein_name": "Histone acetyltransferase p300", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c53a4299436fa019c9e2bee93e664585fe10e63d74b48d280b39554c2fe1396d", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAENVVEPGPPSAKRPKLSSPALSASASDGTDFGSLFDLEHDLPDELINSTELGLTNGGDISQLQTSLGIVQDAASKHKQLSELLRSGSSPNLNMGVGGPGQAMASQAQQNSPGLSLINSMVKSPMAQTGLTSPNMGIGSSGPNQGPTQSPAGMMNSPVNQPAMGMNTGMNAGMNPGMLAAGNGQGIMPNQVMNGSIGAGRGRPNMQYPNAGMGNAGSLLTEPLQQGSPQMGGQPGLRGPQPLKMGMMNNPSPYGSPYTQNSGQQIGASGLGLQIQTKTVLPNNLSPFAMDKKAVPGGGMPSMGQQPTPSVQQPGLVTPVAAGMGSGAHTADPEKRKLIQQQLVLLLHAHKCQRREQANGEVRQCNLPHCRTMKNVLNHMTHCQSGKSCQVAHCASSRQIISHWKNCTRHDCPVCLPLKNAGDKRNQQSILTGAPVGLGNPSSLGVGQQSTPSLSTVSQIDPSSIERAYAALGLPYQVNQIPPQPQVQAKNQQSQPSGQSPQGMRSVNNMSASPMGVNGGVGVQTPNLLSDSMLHSTINSQNPMMSENAGVASLGPLPTAAQPSSTGIRKQWHEDITQDLRNHLVHKLVQAIFPTPDPAALKDRRMENLVAYARKVEGDMYESANNRAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPNAPGMGPVPMNTGSNMGQQPTGMTTNGPVPDPSMIRGSVPNHMMPRMTPQPGLNQFGQMNMPQPPIGPRQPSPLQHHGQLAQSGSLNPPMGYGPRMQQASGQNQFLSQTQFTSQGMNVTNMPLAPSSGQAPVSQAQMSSSSCPVNSPIMPPGSQGSHIHCPTLPQQAHQNSPSPVPSRTPTPHHTPPSIGNQPPPATAIPTPVPTPPAIPPGPQPPSLHPSSRQTPTPPTHLPPQVQPSLPAAPSADQSQQQPRSQQSTAVSVPTPTAPLLPPQPSTPLSQPAVSIEGQVSNPPSTSSTEVNSQTIPEKQPSQEVKMESKMEVDKPEPADAQPEDTKEAKGEDVKVEPTEMEERGPELKTDGKEEEEQPSTSATQSSPAPGQSKKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYIDDIWLMFNNAWLYNRKTSRVYKYCSKLSEVFEQEIDPVMQSLGYCCGRKLEFSPQTLCCYGKQLCTIPRDATYYSYQNRYHFCEKCFNEIQGESVSLGDDPSQPQTTINKEQFSKRKNDTLDPELFVECTECGRKMHQICVLHHEIIWPSGFVCDGCLKKTARTRKENKLSAKRLPSTRLGTFLENRVNDFLRRQNHPESGEVTVRVVHASDKTVEVKPGMKARFVDSGEMAESFPYRTKALFAFEEIDGVDLCFFGMHVQEYGSDCPPPNQRRVYISYLDSVHFFRPKCLRTAVYHEILIGYLEYVKKLGYTTGHIWACPPSEGDDYIFHCHPPDQKIPKPKRLQEWYKKMLDKAVSERIVHDYKDILKQATEDRLTSAKELPYFEGDFWPNVLEESIKELEQEEEERKREENTSNESTDVTKGDSKNAKKKNNKKTSKNKSSLSRGNKKKPGMPNVSNDLSQKLYATMEKHKEVFFVIRLIACPAPNSLPPIVDPDPLIPCDLMDGRDAFLTLARDKHLEFSSLRRAQWSTMCMLVELHTQSQDRFVYTCNECKHHVETRWHCTVCEDYDLCITCYNTKNHDHKMEKLGLGLDDESNNQQAAATQSPGDSRRLSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALCCYHAKHCQENKCPVPFCLNIKQKLRQQQLQHRLQQAQMLRRRMASMQRTGVAGQQQGLPSPTPATPTTPTGQQPATPQTPQPQPTSQPQPTPPNNMTPYLPRTQTTGPVSQGKAPGQVTPPTPPQTAQAPLPGPPPAAVEMAMQIQRAAETQRQMAHVQIFQRPIQHQMPQMSPMAPMGMNPPPMARGPGGHLDPGIGPAGMQQQPPWAQGGMPQPQQMQSGMPRPAMMSVAQHGQPLNMAPQPGLGQVGVSPLKPGTVSQQALQNLLRTLRSPSSPLQQQQVLSILHANPQLLAAFIKQRAAKYANPNPQPLPGQPGMTQGQPGLQPPTMPGQQGVHSNPALQNMNPLQAGVQRAGLPQQQPQQQLQPPMGAMSPQAQQMNMNHNTMPSQFRDILRRQMMQQQGAGPGIGPGMANQFQQPQGIGYPPQQQQQQRMQHHMQQMQQGNMGQMGQLPQALGAEAGASLQAYQQRLLQQQMGSPAQPNPMSPQQHMLPNQAQSPHLQGQQIPNSLSNQVRSPQPVPSPRPQSQPPHSSPSPRMQPQPSPHHVSPQTSSPHPGLVAAQAANPMEQGHFASPDQNSMLSQLASNPGMANLHGASATDLGLSSDNADLNSNLSQSTLDIH", "sequence_length": 2412, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c53a4299436fa019c9e2bee93e664585fe10e63d74b48d280b39554c2fe1396d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/B2RWS6.json", "taxon_id": "10090", "uniprot_accession": "B2RWS6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ring-cbp-p300-pf06001.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ring-cbp-p300-pf06001.yaml" } ], "pfam_ids": [ "PF00439", "PF00569", "PF02135", "PF02172", "PF06001", "PF23570", "PF29847" ], "protein_name": "Protein cbp-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDEPPSKKSRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSAGGSGGPSGSTPHPQGTPQPAPSNNGGFNLQPGQSQPQQPPQNMGGGVNGSVLQELLMNPSQTSNNSPRPQAYPPGQQNAFNRSPMMPNGTPNMMSPPSMGRVPGPSPGGPQPPGPGQPQMRPGQPGMFQGDQQQQMMMGAQGQQFPGMMHRYPYAQGGPPPGAQGMPQGYPGVSRGGPTPGQPMGRGAMMNGAMPRSGPMPTQGRPGIPPNQQAMMQPMMTDRQFMQHGQYGQQRPEFMQQYGRPGGYPMMHQGMMMDSNGQPIRGPNQMMMMSNGHPGMSHGPPNGQPGPQAAAAQHAAQQQAAAQAQAQAAAQQQQQQQREQEAAAAAQRNGAGRATTPGSSMLATHQDPEKRKLIQQQLVLLLHAHKCSQREKENRDFAAKNQPPPHAACTLPHCSTMKEVLTHMTSCNVGRLCHSDTTQTTKKCSVAHCASSRQIIAHWKNCSREDCPVCKPLKRIQDTPLQFSLPDLANLIGVNGNSNGSAEGDGLHQFGSPAMRTGNITNSLFEGFNGNPFQNGPNRGGPRPPGGNGEIPNLPPPDMPDCTKEWHHQVTKDLRNHLVGKLVKAIFPEPNQEAMNDNRLKDLIAYARKVEKEMFESANDREEYYHLLAEKIYKIQKELQEKKNSRLNQGAAAHDQYAIPPSNELAQMLGVEGGRSDVHSEGSSMAVAPSQQNQPWGGAPNSNMHQQIPPNGQVPQVNNSSTFPSSGNSTPNIGASSTVSAMLQPKTEPMDDQNTDSLSSRPPTAIGFGGSSSSTPAPIMNGIVKKEEDPEESSNQAPPSVKDTKDGVAESKPKEQQAKREPTPPPTEDTVFSQEDLIKFLLPVWEKLDKSEDAAPFRVPVDAKLLNIPDYHEIIKRPMDLETVHKKLYAGQYQNAGQFCDDIWLMLDNAWLYNRKNSKVYKYGLKLSEMFVSEMDPVMKSMGYCCAKKLAFTPLSLFCYGAAMCTIAREQQYWVFEQSSTQYNVTVTERYTYCQKCFDALPPEGISLSENPNDRNNMAPKTSFTEQKNSVIDYEPFERCKYCMRKWHRICALHDKKVYPEGFICECCRTAKKYQKPDNKYLASKLPHNKLSTFLEDRVNGFIKKQLQAEAHKYPVIIRTLCVQDKEAEVKAQMKQKYVESNQFPEKFPYRTKAVFAFEIIDGVEVCFFGLHVQEYGSACPAPNARRVYIAYLDSVHFFQPRELRTDVYHELLLGYLDYAKMLGYTMAHIWACPPSEGDDYIFHCHPPEQKIPKPKRLQDWYKKMLEKGVQEGSVVEFKDIYKQARDDNLTTPTQLPYFEGDFWPNVIEDCIREASNEEAQRKVKEDDDDGEDADGGLGGGDSGKKKSSKNKKNNLKKNAKMNKKKAGSITGNEVADKLYSQFEKHKEVFFTIRLVSLQNEPAVLAKPISDPDGLMQSDMMDGRDTFLTKAREEHWEFSSLRRAKYSTLCLAYSLHETDSKGMEYTCNKCSSPAVWHCQSCDDFDLCDGCKPTTQHPHEMEKIKSLIGGGEAGDSAAGGTRYESIQRCIASLVHACQCRDANCRRMSCHKMKRVVQHTKMCKKRINGTCPVCKQLIALCCYHAKHCTRDACTVPFCMNIRQKLAEQKRSQQRRADMMMRRRMEGLQSHVGGAAPTPSTVSNGTPSNAPTPPVSAGPGPAVKGGGVGQVQMQQHQGSHVGGSGPAGMGQPMNSFGGMPGMGLGPNAQNGPGLPGMNPQMNANQSRYMPNGPGLGQSGAPGQQQQPMYSSGMPMQRPGGLGGMNPQQQPQQQQGHPGLQNPGGRPGGVHGMGQNQPVRNNQDMVMNMQMQNQHQQPPPFDSTLQPQIMKINSRLKAAKTEEERETVFSDLKKTPHLFHAWLRMRENQNLVPNRMQGYSQMSMGSSNLQNLQQQQLQQQQAGAMRGGGGFAPGQNNSQPRAPSGQFASMNPSMQQQYPQQQQGWPQQRQQNPGGMQQNANPYNQFQNRQNMMMMPQQQQPHPSNAGGQ", "sequence_length": 2017, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e1ea6963465adbc39abed5881a6215fd2e03ca02f0076d71c3bb2cad368cfff6", "sequence_version": 6, "source_url": "https://rest.uniprot.org/uniprotkb/P34545.json", "taxon_id": "6239", "uniprot_accession": "P34545", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ring-cbp-p300-pf06001.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ring-cbp-p300-pf06001.yaml" } ], "pfam_ids": [ "PF00439", "PF00569", "PF02135", "PF02172", "PF06001", "PF09030", "PF23570", "PF29847" ], "protein_name": "Histone lysine acetyltransferase CREBBP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAENLLDGPPNPKRAKLSSPGFSANDNTDFGSLFDLENDLPDELIPNGELSLLNSGNLVPDAASKHKQLSELLRGGSGSSINPGIGNVSASSPVQQGLGGQAQGQPNSTNMASLGAMGKSPLNQGDSSTPNLPKQAASTSGPTPPASQALNPQAQKQVGLVTSSPATSQTGPGICMNANFNQTHPGLLNSNSGHSLMNQAQQGQAQVMNGSLGAAGRGRGAGMPYPAPAMQGATSSVLAETLTQVSPQMAGHAGLNTAQAGGMTKMGMTGTTSPFGQPFSQTGGQQMGATGVNPQLASKQSMVNSLPAFPTDIKNTSVTTVPNMSQLQTSVGIVPTQAIATGPTADPEKRKLIQQQLVLLLHAHKCQRREQANGEVRACSLPHCRTMKNVLNHMTHCQAGKACQVAHCASSRQIISHWKNCTRHDCPVCLPLKNASDKRNQQTILGSPASGIQNTIGSVGAGQQNATSLSNPNPIDPSSMQRAYAALGLPYMNQPQTQLQPQVPGQQPAQPPAHQQMRTLNALGNNPMSIPAGGITTDQQPPNLISESALPTSLGATNPLMNDGSNSGNIGSLSTIPTAAPPSSTGVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRSRLHKQGILGNQPALPASGAQPPVIPPAQSVRPPNGPLPLPVNRMQVSQGMNSFNPMSLGNVQLPQAPMGPRAASPMNHSVQMNSMASVPGMAISPSRMPQPPNMMGTHANNIMAQAPTQNQFLPQNQFPSSSGAMSVNSVGMGQPAAQAGVSQGQVPGAALPNPLNMLAPQASQLPCPPVTQSPLHPTPPPASTAAGMPSLQHPTAPGMTPPQPAAPTQPSTPVSSGQTPTPTPGSVPSAAQTQSTPTVQAAAQAQVTPQPQTPVQPPSVATPQSSQQQPTPVHTQPPGTPLSQAAASIDNRVPTPSSVTSAETSSQQPGPDVPMLEMKTEVQTDDAEPEPTESKGEPRSEMMEEDLQGSSQVKEETDTTEQKSEPMEVEEKKPEVKVEAKEEEENSSNDTASQSTSPSQPRKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSLGYCCGRKYEFSPQTLCCYGKQLCTIPRDAAYYSYQNRYHFCEKCFTEIQGENVTLGDDPSQPQTTISKDQFEKKKNDTLDPEPFVDCKECGRKMHQICVLHYDIIWPSGFVCDNCLKKTGRPRKENKFSAKRLQTTRLGNHLEDRVNKFLRRQNHPEAGEVFVRVVASSDKTVEVKPGMKSRFVDSGEMSESFPYRTKALFAFEEIDGVDVCFFGMHVQNTALIAPHQIQGRVYISYLDSIHFFRPRCLRTAVYHEILIGYLEYVKKLGYVTGHIWACPPSEGDDYIFHCHPPDQKIPKPKRLQEWYKKMLDKAFAERIINDYKDIFKQANEDRLTSAKELPYFEGDFWPNVLEESIKELEQEEEERKKEESTAASETPEGSQGDSKNAKKKNNKKTNKNKSSISRANKKKPSMPNVSNDLSQKLYATMEKHKEVFFVIHLHAGPVISTQPPIVDPDPLLSCDLMDGRDAFLTLARDKHWEFSSLRRSKWSTLCMLVELHTQGQDRFVYTCNECKHHVETRWHCTVCEDYDLCINCYNTKSHTHKMVKWGLGLDDEGSSQGEPQSKSPQESRRLSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPVCKQLIALCCYHAKHCQENKCPVPFCLNIKHKLRQQQIQHRLQQAQLMRRRMATMNTRNVPQQSLPSPTSAPPGTPTQQPSTPQTPQPPAQPQPSPVNMSPAGFPNVARTQPPTIVSAGKPTNQVPAPPPPAQPPPAAVEAARQIEREAQQQQHLYRANINNGMPPGRAGMGTPGSQMTPVGLNVPRPNQVSGPVMSSMPPGQWQQAPIPQQQPMPGMPRPVMSMQAQAAVAGPRMPNVQPPRSISPSALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAFIKQRTAKYVANQPGMQPQPGLQSQPGMQPQPGMHQQPSLQNLNAMQAGVPRPGVPPPQPAMGGLNPQGQALNIMNPGHNPNMTNMNPQYREMVRRQLLQHQQQQQQQQQQQQQQQNSASLAGGMAGHSQFQQPQGPGGYAPAMQQQRMQQHLPIQGSSMGQMAAPMGQLGQMGQPGLGADSTPNIQQALQQRILQQQQMKQQIGSPGQPNPMSPQQHMLSGQPQASHLPGQQIATSLSNQVRSPAPVQSPRPQSQPPHSSPSPRIQPQPSPHHVSPQTGSPHPGLAVTMASSMDQGHLGNPEQSAMLPQLNTPNRSALSSELSLVGDTTGDTLEKFVEGL", "sequence_length": 2441, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d1308d7c7ce51f8c3ab368895a4b7e21c3f8ded387325d5d82051c2d9fbe1f6a", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P45481.json", "taxon_id": "10090", "uniprot_accession": "P45481", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/creb-binding-pf09030.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/creb-binding-pf09030.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hat-kat11-pf08214.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08214", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hat-kat11-pf08214.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kix-pf02172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kix-pf02172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ring-cbp-p300-pf06001.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ring-cbp-p300-pf06001.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q09472", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00439", "PF00569", "PF02135", "PF02172", "PF06001", "PF09030", "PF23570", "PF29847" ], "protein_name": "Histone acetyltransferase p300", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b1145f7221920a6ebbaba4b030af3d5df9b1df69d37f2a656aa2640c37336aa4", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAENVVEPGPPSAKRPKLSSPALSASASDGTDFGSLFDLEHDLPDELINSTELGLTNGGDINQLQTSLGMVQDAASKHKQLSELLRSGSSPNLNMGVGGPGQVMASQAQQSSPGLGLINSMVKSPMTQAGLTSPNMGMGTSGPNQGPTQSTGMMNSPVNQPAMGMNTGMNAGMNPGMLAAGNGQGIMPNQVMNGSIGAGRGRQNMQYPNPGMGSAGNLLTEPLQQGSPQMGGQTGLRGPQPLKMGMMNNPNPYGSPYTQNPGQQIGASGLGLQIQTKTVLSNNLSPFAMDKKAVPGGGMPNMGQQPAPQVQQPGLVTPVAQGMGSGAHTADPEKRKLIQQQLVLLLHAHKCQRREQANGEVRQCNLPHCRTMKNVLNHMTHCQSGKSCQVAHCASSRQIISHWKNCTRHDCPVCLPLKNAGDKRNQQPILTGAPVGLGNPSSLGVGQQSAPNLSTVSQIDPSSIERAYAALGLPYQVNQMPTQPQVQAKNQQNQQPGQSPQGMRPMSNMSASPMGVNGGVGVQTPSLLSDSMLHSAINSQNPMMSENASVPSLGPMPTAAQPSTTGIRKQWHEDITQDLRNHLVHKLVQAIFPTPDPAALKDRRMENLVAYARKVEGDMYESANNRAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPNAAGMVPVSMNPGPNMGQPQPGMTSNGPLPDPSMIRGSVPNQMMPRITPQSGLNQFGQMSMAQPPIVPRQTPPLQHHGQLAQPGALNPPMGYGPRMQQPSNQGQFLPQTQFPSQGMNVTNIPLAPSSGQAPVSQAQMSSSSCPVNSPIMPPGSQGSHIHCPQLPQPALHQNSPSPVPSRTPTPHHTPPSIGAQQPPATTIPAPVPTPPAMPPGPQSQALHPPPRQTPTPPTTQLPQQVQPSLPAAPSADQPQQQPRSQQSTAASVPTPTAPLLPPQPATPLSQPAVSIEGQVSNPPSTSSTEVNSQAIAEKQPSQEVKMEAKMEVDQPEPADTQPEDISESKVEDCKMESTETEERSTELKTEIKEEEDQPSTSATQSSPAPGQSKKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRKTSRVYKYCSKLSEVFEQEIDPVMQSLGYCCGRKLEFSPQTLCCYGKQLCTIPRDATYYSYQNRYHFCEKCFNEIQGESVSLGDDPSQPQTTINKEQFSKRKNDTLDPELFVECTECGRKMHQICVLHHEIIWPAGFVCDGCLKKSARTRKENKFSAKRLPSTRLGTFLENRVNDFLRRQNHPESGEVTVRVVHASDKTVEVKPGMKARFVDSGEMAESFPYRTKALFAFEEIDGVDLCFFGMHVQEYGSDCPPPNQRRVYISYLDSVHFFRPKCLRTAVYHEILIGYLEYVKKLGYTTGHIWACPPSEGDDYIFHCHPPDQKIPKPKRLQEWYKKMLDKAVSERIVHDYKDIFKQATEDRLTSAKELPYFEGDFWPNVLEESIKELEQEEEERKREENTSNESTDVTKGDSKNAKKKNNKKTSKNKSSLSRGNKKKPGMPNVSNDLSQKLYATMEKHKEVFFVIRLIAGPAANSLPPIVDPDPLIPCDLMDGRDAFLTLARDKHLEFSSLRRAQWSTMCMLVELHTQSQDRFVYTCNECKHHVETRWHCTVCEDYDLCITCYNTKNHDHKMEKLGLGLDDESNNQQAAATQSPGDSRRLSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALCCYHAKHCQENKCPVPFCLNIKQKLRQQQLQHRLQQAQMLRRRMASMQRTGVVGQQQGLPSPTPATPTTPTGQQPTTPQTPQPTSQPQPTPPNSMPPYLPRTQAAGPVSQGKAAGQVTPPTPPQTAQPPLPGPPPAAVEMAMQIQRAAETQRQMAHVQIFQRPIQHQMPPMTPMAPMGMNPPPMTRGPSGHLEPGMGPTGMQQQPPWSQGGLPQPQQLQSGMPRPAMMSVAQHGQPLNMAPQPGLGQVGISPLKPGTVSQQALQNLLRTLRSPSSPLQQQQVLSILHANPQLLAAFIKQRAAKYANSNPQPIPGQPGMPQGQPGLQPPTMPGQQGVHSNPAMQNMNPMQAGVQRAGLPQQQPQQQLQPPMGGMSPQAQQMNMNHNTMPSQFRDILRRQQMMQQQQQQGAGPGIGPGMANHNQFQQPQGVGYPPQQQQRMQHHMQQMQQGNMGQIGQLPQALGAEAGASLQAYQQRLLQQQMGSPVQPNPMSPQQHMLPNQAQSPHLQGQQIPNSLSNQVRSPQPVPSPRPQSQPPHSSPSPRMQPQPSPHHVSPQTSSPHPGLVAAQANPMEQGHFASPDQNSMLSQLASNPGMANLHGASATDLGLSTDNSDLNSNLSQSTLDIH", "sequence_length": 2414, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b1145f7221920a6ebbaba4b030af3d5df9b1df69d37f2a656aa2640c37336aa4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q09472.json", "taxon_id": "9606", "uniprot_accession": "Q09472", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/creb-binding-pf09030.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/creb-binding-pf09030.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hat-kat11-pf08214.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08214", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hat-kat11-pf08214.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kix-pf02172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kix-pf02172.yaml" }, { "cited_uniprot_accession": "", 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"PF00569", "PF02135", "PF02172", "PF06001", "PF09030", "PF23570", "PF29847" ], "protein_name": "CREB-binding protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "25d7e9ae5fd4915f3d49b417f6e8d928d3840a74eacf8094f64cd21b93001807", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"data/traits/sequence/domain/interpro/trp-c-terminal-ipr010308.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010308", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trp-c-terminal-ipr010308.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trp-n-pf14558.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14558", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trp-n-pf14558.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/trp-pf06011.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06011", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/trp-pf06011.yaml" } ], "pfam_ids": [ "PF06011", "PF14558" ], "protein_name": "Uncharacterized membrane protein YOR365C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPIKVFSLSRIFVLLAIFRQIHAISINSSTFQVSNSFTLLNNASTLFPVPFDAYTKEYLRTSALLTCAKDSQFSASYFEAAFFPRNNTLFFNVEAQTIMSENITIKAELIAYGLNVYTKVFDLCGIQDNLLCPLKPGNIELMGSYYVEAAVASQIPSITYNIPDLDAYIVVTAYSTIDKEFTKPLACVQVMLSNGRTVQTEYLSWNLVILTISGIMFSVVYSLQGYTVTSTRLASYSISLLLYFQNLAILAMISVSFLPPIVAAWTQNFQWSMGIIRINFMQRLFDWYVVATSGSPTVVYRNKEVLSISVQKRSLNSKIISASSNLNGIESSQKNDLLYTSNLRNSNDYLSKILVLRGIKRVSYKAGIEISNFFLTGFSFFIIFICMIILAFIIFKTFLKVLQKFKVKTIRYLHFHTHWSALLQGTLYRAVFIIYSEISLLALWEFTQTDSAATLVEAIVVFILITVLLSSASVRIWRKMIKSKKIFGQPSYLLFSSSKFLNKFGFLSSQFKSTKVWWLMATSAHMLIRSILVGSLQAHGKSQSIGIFLNEAIYLILLCWMQPYMDKTTNFFNISIHSLNLVNAFFFLFFSNLFQQPIAVSSFMGLIFFFLNAAFSLYLFIFILICFTMAIYYKHPDTRYKPIDDQRRSFLKGEMDDDAVYESVPELHEMKKAVLECNGIQKPQINKIDLCKQNSNCEYLYM", "sequence_length": 703, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d5436d7894b299782d7c3da6c73363feb4af6dff556bfef849fd6936c8b7dc50", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q08844.json", "taxon_id": "559292", "uniprot_accession": "Q08844", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/fad-transmembrane-transporter-activity-go0015230.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015230", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/fad-transmembrane-transporter-activity-go0015230.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/fad-transport-go0015883.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/fad-transport-go0015883.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/fungal-type-cell-wall-biogenesis-go0009272.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009272", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/fungal-type-cell-wall-biogenesis-go0009272.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/the-ml-md-2-related-lipid-recognition-domain-is-present-in-md-1-md-2-g-cd00912.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd00912", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/the-ml-md-2-related-lipid-recognition-domain-is-present-in-md-1-md-2-g-cd00912.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ml-like-domain-ipr032800.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032800", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ml-like-domain-ipr032800.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trp-c-terminal-ipr010308.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010308", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trp-c-terminal-ipr010308.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trp-n-pf14558.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14558", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trp-n-pf14558.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/trp-pf06011.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06011", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/trp-pf06011.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q08967", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06011", "PF14558" ], "protein_name": "Flavin carrier protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7e0b6609188e7f389dcd1d017c2c14665fd5fb36bb40fd716a89c6b40e5ae842", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQVLVTLWCLICTCLVLPVAAKKRTLTASSLVTCMENSQLSANSFDVSFSPDDRSLHYDLDMTTQIDSYIYAYVDVYAYGFKIITENFDVCSMGWKQFCPVHPGNIQIDSIEYIAQKYVKMIPGIAYQVPDIDAYVRLNIYNNVSENLACIQVFFSNGKTVSQIGVKWVTAVIAGIGLLTSAVLSTFGNSTAASHISANTMSLFLYFQSVAVVAMQHVDSVPPIAAAWSENLAWSMGLIRITFMQKIFRWYVEATGGSASLYLTATTMSVLTQRGLDYLKNTSVYKRAENVLYGNSNTLIFRGIKRMGYRMKIENTAIVCTGFTFFVLCGYFLAGFIMACKYSIELCIRCGWMRSDRFYQFRKNWRSVLKGSLLRYIYIGFTQLTILSFWEFTERDSAGVIVIACLFIVLSCGLMAWAAYRTIFFASKSVEMYNNPAALLYGDEYVLNKYGFFYTMFNAKHYWWNALLTTYILVKALFVGFAQASGKTQALAIFIIDLAYFVAIIRYKPYLDRPTNIVNIFICTVTLVNSFLFMFFSNLFNQKYAVSAIMGWVFFIMNAAFSLLLLLMILAFTTIILFSKNPDSRFKPAKDDRASFQKHAIPHEGALNKSVANELMALGNVAKDHTENWEYELKSQEGKSEDNLFGVEYDDEKTGTNSENAESSSKETTRPTFSEKVLRSLSIKRNKSKLGSFKRSAPDKITQQEVSPDRASSSPNSKSYPGVSHTRQESEANNGLINAYEDEQFSLMEPSILEDAASSTQMHAMPARDLSLSSVANAQDVTKKANILDPDYL", "sequence_length": 793, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7e0b6609188e7f389dcd1d017c2c14665fd5fb36bb40fd716a89c6b40e5ae842", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q08967.json", "taxon_id": "559292", "uniprot_accession": "Q08967", "uniprot_release": "2026_03" } ], "pfam_id": "PF06011", "short_name": "TRP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf913-pf06025.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf913-pf06025.yaml" } ], "pfam_ids": [ "PF00632", "PF02825", "PF06012", "PF06025", "PF14377", "PF22562" ], "protein_name": "E3 ubiquitin-protein ligase HUWE1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKVDRTKLKKTPTEAPADCRALIDKLKVCNDEQLLLELQQIKTWNIGKCELYHWVDLLDRFDGILADAGQTVENMSWMLVCDRPEKEQLKMLLLAVLNFTALLIEYSFSRHLYSSIEHLTTLLASSDMQVVLAVLNLLYVFSKRSNYITRLGSDKRTPLLTRLQHLAESWGGKENGFGLAECCRDLQMLKYPPSATTLHFEFYADPGAEVKIEKRTTSNTLHYIHIEQLDKISESPSEIMESLTKMYSIPKDKQMLLFTHIRLAHGFSNHRKRLQAVQARLHAISILVYSNALQESANSILYNGLIEELVDVLQITDKQLMEIKAASLRTLTSIVHLERTPKLSSIIDCTGTASYHGFLPVLVRNCIQAMIDPSMDPYPHQFATALFSFLYHLASYDAGGEALVSCGMMEALLKVIKFLGDEQDQITFVTRAVRVVDLITNLDMAAFQSHSGLSIFIYRLEHEVDLCRKECPFVIKPKIQRPSTTQEGEEMETDMDVADVTMESSPGSSISMEHRLDVELRASSSNSSTSISGPGPGPGPGPGPGPGPGPGPGPGPGLGPSLGPGPGPGPRPGVQCIPQRAALLKSMLNFLKKAIQDPAFSDGIRHVMDGSLPTSLKHIISNAEYYGPSLFLLATEVVTVFVFQEPSLLSSLQDNGLTDVMLHALLIKDVPATREVLGSLPNVFSALCLNARGLQSFVQCQPFERLFKVLLSPDYLPAMRRRRSSDPLGDTASNLGSAVDELMRHQPTLKTDATTAIIKLLEEICNLGRDPKYICQKPSIQKADGTTSAPPPRSNHAAEEASSEDEEEEEVQAMQSFNSAQQNETEPNQQVVGTEERIPIPLMDYILNVMKFVESILSNNTTDDHCQEFVNQKGLLPLVTILGLPNLPIDFPTSAACQAVAGVCKSILTLSHEPKVLQEGLLQLDLILSSLEPLHRPIESPGGSVLLRELACAGNVADATLSAQATPLLHALTAAHAYIMMFVHTCRVGQSEIRSISVNQWGSQLGLSVLSKLSQLYCSLVWESTVLLSLCTPNSLPSGCEFGQADMQKLVPKDEKAGTTQGGKRSDGEQDGTAGSMDASAQGLLEGIELDGDTLAPMETDEPSSSDSKGKSKITPAMAARIKQIKPLLSASSRLGRALAELFGLLVKLCVGSPVRQRRSHHAASTTTAPTPAARSTASALTKLLTKGLSWQPPPYTPTPRFRLTFFICSVGFTSPMLFDERKYPYHLMLQKFLCSGGHNALFETFNWALSMGGKVPVSEGLEHSDLPDGTGEFLDAWLMLVEKMVNPTTVLESPHSLPAKLPGGVQSFPQFSALRFLVVTQKAAFTCIKNLWNRKPLKVYGGRMAESMLAILCHILRGEPVIRERLSKEKEGSRGEEEAGQEEGGSRREPQVNQQQLQQLMDMGFTREHAMEALLNTSTMEQATEYLLTHPPPIIGGVVRDLSMSEEDQMMRAIAMSLGQDIPMDQRAESPEEVACRKEEEERKAREKQEEEEAKCLEKFQDADPLEQDELHTFTDTMLPGCFHLLDELPDTVYRVCDLIMTAIKRNGADYRDMILKQVVNQVWEAADVLIKAALPLTTSDTKTVSEWISQMATLPQASNLATRILLLTLLFEELKLPCAWVVESSGILNVLIKLLEVVQPCLQAAKEQKEVQTPKWITPVLLLIDFYEKTAISSKRRAQMTKYLQSNSNNWRWFDDRSGRWCSYSASNNSTIDSAWKSGETSVRFTAGRRRYTVQFTTMVQVNEETGNRRPVMLTLLRVPRLSKNSKSSNGQELEKTLEESKETDIKRKENKGNDIPLALESTNTEKDASLEETKIGEILIQGLTEDMVTVLIRACVSMLGVPVDPDTLHATLRLCLRLTRDHKYAMMFAELKSTRMILNLTQSSGFNGFTPLVTLLLRHIIEDPCTLRHTMEKVVRSAATSGAGSTTSGVVSGSLGSREINYILRVLGPAACRNPDIFTEVANCCIRIALPAPRGSGTASDDEFENLRIKGPNAVQLVKTTPLKPSSLPVIPDTIKEVIYDMLNALAAYHAPEEADKSDPKPGGMTQEVGQLLQDMGDDVYQQYRSLTRQSSDFDTQSGFSLNSQVFAADGAPAETSTTGTSQGEGASTPEETREGKKDKEGDRTSEEGKQKGKGSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPHTQNAEDKDTPALARLFLASLAAAGSGTDAQVALVNEVKAALGRALAMAESTEKHARLQAVMCIISTIMESCPSTSSFYSSATAKTQHNGMNNIIRLFLKKGLVNDLARVPHSLDLSSPNMANTVNAALKPLETLSRIVNQPSSLFGSKSASSKSKSEQDAQGASQDSSSHQQDPGEPGEAEVQEEDHDVTQTEVADGDIMDGEAETDSVVIAGQPEVLSSQEMQVENELEDLIDELLERDGGSGNSTIIVSRSGEDESQEDVLMDEAPSNLSQASTLQANREDSMNILDPEDEEEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGSEMELDEDYPDMNASPLVRFERFDREDDLIIEFDNMFSSATDIPPSPGNIPTTHPLMVRHADHSSLTLGSGSSTTRLTQGIGRSQRTLRQLTANTGHTIHVHYPGNRQPNPPLILQRLLGPSAAADILQLSSSLPLQSRGRARLLVGNDDVHIIARSDDELLDDFFHDQSTATSQAGTLSSIPTALTRWTEECKVLDAESMHDCVSVVKVPIVNHLEFLRDEELEERREKRRKQLAEEETKIIDKGKEDKENRDQSAQCTVSKTNDSTEQNVSDGTPMPDSYPTTPSSTDAPTSESKETLGTLQPSQQQPTLPPPPSLGEISQELQSPAEEVGNSTQLLMPIELEELGPTRPSGEAETTQMELSPAPTITSLSPERAEDSDALTAVSSQLEGSPMDTSSLASCTLEEAVGDTPAAGSSEQPTAGSSTPGDAPSVGADVQGRPDVSRESTQPPEDSSPPASSESSSTRDSAVAISGADSRGILEEPLPSTSSEEEDPLAGISLPEGVDPSFLAALPDDIRREVLQNQLGIRPPTRTAPSTNSSTPAVVGNPGVTEVSPEFLAALPPAIQEEVLAQQRAEQQRRELAQNASSDTPMDPVTFIQTLPSDLRRSVLEDMEDSVLAVMPPDIAAEAQALRREQEARQRQLMHERLFGHSSTSALSAILRSPAFTSRLSGNRGVQYTRLAVQRGGTFQMGGSSSHNRPSGSNVDTLLRLRGRLLLDHEALSCLLVLLFVDEPKLNTSRLHRVLRNLCYHAQTRHWVIRSLLSILQRSSESELCIETPKLSTSEERGKKSSKSCASSSHENRPLDLLHKMESKSSNQLSWLSVSMDAALGCRTNIFQIQRSGGRKHTEKHASSGSTVHIHPQAAPVVCRHVLDTLIQLAKVFPSHFTQQRTKETNCESDRERGSKQACSPCSSQSSSSGICTDFWDLLVKLDNMNVSRKGKNSVKSVPVSAGGEGETSLHSLEASPLGQLMNMLSHPVIRRSSLLTEKLLRLLSLISIALPENKVSEVQTNSSNSGSSTAATSNTSTTTTTTTATAPTPTPPAATTPVTSAPALVAATAISTITVAASTTVTTPTTATTTVSTSTTKGNKSPAKVGEGGSSSVDFKMVSSGLTENQLQLSVEVLTSHSCSEEGLEDAANVLLQLSRGDSGTRDTVLKLLLNGARHLGYTLCKQIGTLLAELREYNLEQQRRAQCETLSPDGLPEEQPQTTKLKGKMQSRFDMAENVVIVASQKRPLGGRELQLPSMSMLTSKTSTQKFFLRVLQVIIQLRDDTRRANKKAKQTGRLGSSGLGSASSIQAAVRQLEAEADAIIQMVREGQRARRQQQAATSESSNQSETSVRREESPMDVDQPSPSAQDTQSIVVSDGTPQGEKEKEERPPELPLLSEQLSLDELWDMLGECLKELEESHDQHAVLVLQPAVEAFFLVHATERESKPPVRDTRESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSREPSSMHISSSLPPDTQKFLRFAETHRTVLNQILRQSTTHLADGPFAVLVDYIRVLDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA", "sequence_length": 4454, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60048164b6f98ce69e087742e64e750122c0b55e098ccb427020e9eecf5264ac", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P51593.json", "taxon_id": "10116", "uniprot_accession": "P51593", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf908-pf06012.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf908-pf06012.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q03280", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00632", "PF06012", "PF06025", "PF14377" ], "protein_name": "E3 ubiquitin-protein ligase TOM1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "93818cb1b0a397b84cfc3466e2efc65c220a0e7d35ef8bf050f6e211e5145a28", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVLFTRCEKARKEKLAAGYKPLVDYLIDCDTPTFLERIEAIQEWDRSRDDLYVWIPILDRMDGLLLKVAEKYKYKQDPKKECEVKLVEMEAHDVDYCLKMLKFTRRLLLNTENRFVYSSGDVLMYLLNCPNFTIKLAVMRILAILGERFVIAREKIVAHNIFGDHNLRKKTLKLALSLSSSVMDEDGEHFSLVDLYFDKKKVPQKWRKLRFTHYTSNDFKKSSQQKNNINETQTSIKKVTMTTQELCEHSLQQIFDKGMALLPAESWFDFSIKASVAKAFSDDSGENIDLRNIIIETKLNAIAFVNTIFSPPQVSSKLFELDPYAFNSLTDLISLSETKIPKELRTDALFTLECISLKHVWCSDIIRNLGGNISHGLLFQILRYIAKTLREATDEIDEEYNVRFFYLISNLADVKPLHESLFAAGLIPTLLEIVSIRNCPYKRTLASATHLLETFIDNSETTTEFIENDGFTMLITSVANEIDFTLAHPETWQPPKYSVVYYSISFRELAYIRSLLKLVLKLLSTDSGDRIRNLIDSPILVSLKKILENKLVFGLTLITYTLDVVQKVINSEPTIYPVLVEAGLIPYVIDNFPKLIGPSAELLSLLPDVVSAICLNPEGLKQVKEKGLINNLFDFLLDADHARILTGGDRSTEYGTDIDELARHYPDLKANIVEALCNVIRKMPSTFRNEREFLFTSPKDQKYFFHRKNEEILTDKEEHEPAYWELLDKGTMLDTFTSVLFGMSLGNGSFSQVPQHLEARDFLAIIFMENPPYEYFTSVAISNVTEVLQYLDEKYEDYAFMDVMKVLNDQLENLNDFLNSPNDRSFFLERDGENSVRSCHSKLCRLAAILNIVTNVYIDLTTLSCKRIMQIYSYFDKRGFSLIKNLKLLFQKCALEEMYIRQHMPDSVITETMPLPIVDVSGDGPPLQIYIDDPKKGDQKGKITSVKTRNTLQMRTILYTLQSNTAILFRCFLRLSHSRNMDLEHKDLTTEVHIFENVVENVIEMLKATELEGHLPYILVLLNFNTFVFTIPKASPNSTEILQTIPAYIFYQKGGYLLYLHIIRDLFTRMTKIKDLSSLDNINYIDESNGILTLSCLINALTFYNKSMQTETMENVQSIGKYYVSIDDDYNIMKALTVPIKVMALAMILDLDKSDSLFKTQSRNVPYSVFKQLLSMLKNIFTNVNIYTKELYELHWDLIFPPIKKISLFEQVGIPGDVAANYLTDTGDDLPADNSIGLFSPEQWEKYKKLIGEDKSIYYPQPMQAQYYKGCSSKELDELRDTFFNDGLPSRIFTVLPFYPKLVNAFAKTLLQIFTKYDEPTEVFAGRILDRILETDLDDPATLSSLIHLFGIFLNEKYIYQKASHLMQRFIEYLEKSLKPEHVNTPWFSKALYVYEIILAKSELPHLEELSKDVLLRYPLLSMAKVFRIPDPMKQKLFDILIRVSDISNFYSALATSRILIFYSRDELYANNIARSGILSRLLKVIGSFQKLDKINFLESSFLLLTRRCFETTENVDALIRAEINRSFTARPLGGGDDAVRELTTILEEKAHVVMRSPSQFIDVLCETARFHEFDDQGALVDYSLKRFLGEKDKNTQASSTEKSDIYERTGIMHLLLSQLMAASEKDWLSEPANSSDLPENKKAQLDPSRNPVCAYMIFLLKLLVELVSSYNQCKFEFLTFSRRNTYAERPRPRTTAINFFLYRLLDKPVGTDHDKHEAKRREVIGMLARSVIIGFLATVQDDRTTKTDVKLADPHMNFIRKFAIEAIIKAIRNATSSSKLLESNHLKLDMWFRIITSMVYVQAPYLRQLLDSNKVEADQYQLCKLVIDLGLPSVITEAMASIDLNYPFSKKIFNVAVEALNTISSTRNNFSEHFKIEDHDEVEDEVDESDKEEIPDMFKNSALGMYDVEDIEEDDDDDTSLIGDDDAMAFVDSDNGFEVVFSDEDDDMGEEDADDARSDSEENELSSEMQSSTADGTDVDYEVDDADGLIINIDQPSGDDEEMADYDANISHSSHSENEDDASMDVIEVYDDELSSGYDVDLSDYDVDESDWDSGLSSLSISDEDSESSEDEPINSTRMGDSRRRWLIAEGVELTDDSQGESEEDDRGVFRGIEHIFSNENEPLFRVHDEMRHRNHHRSINRTHFHSAMSAPSLSLLNRGRRNQSNLINPLGPTGLEQVENDISDQVTVAGSGSRPRSHHLHFSEVLVSGSFFDEPVLDGIILKSTVSRWKDIFDMFYDSKTYANCIIPTVINRLYKVSLALQKDLENKREQEKLKNKNLLFNEAKVESHNSSDAISVEQDDIQESNVTHDDHEPVYVTIQGSEVDIGGTDIDPEFMNALPDDIRADVFAQHVRERRAEARLNSDHNVHSREIDSDFLEAIPEDIREGILDTEAEEQRMFGRIGSSADVIRADDDVSNNDEEVENGLDHGNSNDRNNADPEKKKPARIYFAPLIDRAGIASLMKSVFISKPYIQREIYHELFYRLCSSKQNRNDLMNTFLFILSEGIIDQHSLEKVYNIISSRAMGHAKTTTVRQLPSDCTPLTVANQTIEILQSLIDADSRLKYFLIAEHDNLIVNKANNKSRKEALPDKKLRWPLWHLFSLLDRKLITDESVLMDLLTRILQVCTKTLAVLSTSSNGKENLSKKFHLPSFDEDDLMKILSIIMLDSCTTRVFQQTLNIIYNLSKLQGCMSIFTKHLVSLAISIMSKLKSALDGLSREVGTITTGMEINSELLQKFTLPSSDQAKLLKILTTVDFLYTHKRKEEERNVKDLQSLYDKMNGGPVWSSLSECLSQFEKSQAINTSATILLPLIESLMVVCRRSDLSQNRNTAVKYEDAKLLDFSKTRVENLFFPFTDAHKKLLNQMIRSNPKLMSGPFALLVKNPKVLDFDNKRYFFNAKLKSDNQERPKLPITVRREQVFLDSYRALFFKTNDEIKNSKLEITFKGESGVDAGGVTREWYQVLSRQMFNPDYALFLPVPSDKTTFHPNRTSGINPEHLSFFKFIGMIIGKAIRDQCFLDCHFSREVYKNILGRPVSLKDMESLDPDYYKSLVWILENDITDIIEETFSVETDDYGEHKVINLIEGGKDIIVTEANKQDYVKKVVEYKLQTSVKEQMDNFLVGFYALISKDLITIFDEQELELLISGLPDIDVDDWKNNTTYVNYTATCKEVSYFWRAVRSFDAEERAKLLQFVTGTSKVPLNGFKELSGVNGVCKFSIHRDFGSSERLPSSHTCFNQLNLPPYESYETLRGSLLLAINEGHEGFGLA", "sequence_length": 3268, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "93818cb1b0a397b84cfc3466e2efc65c220a0e7d35ef8bf050f6e211e5145a28", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q03280.json", "taxon_id": "559292", "uniprot_accession": "Q03280", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf908-pf06012.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf908-pf06012.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf913-pf06025.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf913-pf06025.yaml" } ], "pfam_ids": [ "PF00632", "PF02825", "PF06012", "PF06025", "PF14377", "PF22562" ], "protein_name": "E3 ubiquitin-protein ligase HUWE1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKVDRTKLKKTPTEAPADCRALIDKLKVCNDEQLLLELQQIKTWNIGKCELYHWVDLLDRFDGILADAGQTVENMSWMLVCDRPEKEQLKMLLLAVLNFTALLIEYSFSRHLYSSIEHLTTLLASSDMQVVLAVLNLLYVFSKRSNYITRLGSDKRTPLLTRLQHLAESWGGKENGFGLAECCRDLQMLKYPPSATTLHFEFYADPGAEVKIEKRTTSNTLHYIHIEQLDKISESPSEIMESLTKMYSIPKDKQMLLFTHIRLAHGFSNHRKRLQAVQARLHAISILVYSNALQESANSILYNGLIEELVDVLQITDKQLMEIKAASLRTLTSIVHLERTPKLSSIIDCTGTASYHGFLPVLVRNCIQAMIDPSMDPYPHQFATALFSFLYHLASYDAGGEALVSCGMMEALLKVIKFLGDEQDQITFVTRAVRVVDLITNLDMAAFQSHSGLSIFIYRLEHEVDLCRKECPFVIKPKIQRPSTTQEGEEMETDMDGVQCIPQRAALLKSMLNFLKKAIQDPAFSDGIRHVMDGSLPTSLKHIISNAEYYGPSLFLLATEVVTVFVFQEPSLLSSLQDNGLTDVMLHALLIKDVPATREVLGSLPNVFSALCLNARGLQSFVQCQPFERLFKVLLSPDYLPAMRRRRSSDPLGDTASNLGSAVDELMRHQPTLKTDATTAIIKLLEEICNLGRDPKYICQKPSIQKADGTATAPPPRSNHAAEEASSEDEEEEEVQAMQSFNSAQQNETEPNQQVVGTEERIPIPLMDYILNVMKFVESILSNNTTDDHCQEFVNQKGLLPLVTILGLPNLPIDFPTSAACQAVAGVCKSILTLSHEPKVLQEGLLQLDLILSSLEPLHRPIESPGGSVLLRELACAGNVADATLSAQATPLLHALTAAHAYIMMFVHTCRVGQSEIRSISVNQWGSQLGLSVLSKLSQLYCSLVWESTVLLSLCTPNSLPSGCEFGQADMQKLVPKDEKAGTTQGGKRSDGEQDGTAGSMDASAQGLLEGIELDGDTLAPMETDEPSSSDSKGKSKITPAMAARIKQIKPLLSASSRLGRALAELFGLLVKLCVGSPVRQRRSHHAASTTTAPTPAARSTASALTKLLTKGLSWQPPPYTPTPRFRLTFFICSVGFTSPMLFDERKYPYHLMLQKFLCSGGHNALFETFNWALSMGGKVPVSEGLEHSDLPDGTGEFLDAWLMLVEKMVNPTTVLESPHSLPAKLPGGVQSFPQFSALRFLVVTQKAAFTCIKNLWNRKPLKVYGGRMAESMLAILCHILRGEPVIRERLSKEKEGSRGEEEAGQEEGGSRREPQVNQQQLQQLMDMGFTREHAMEALLNTSTMEQATEYLLTHPPPIIGGVVRDLSMSEEDQMMRAIAMSLGQDIPMDQRAESPEEVACRKEEEERKAREKQEEEEAKCLEKFQDADPLEQDELHTFTDTMLPGCFHLLDELPDTVYRVCDLIMTAIKRNGADYRDMILKQVVNQVWEAADVLIKAALPLTTSDTKTVSEWISQMATLPQASNLATRILLLTLLFEELKLPCAWVVESSGILNVLIKLLEVVQPCLQAAKEQKEVQTPKWITPVLLLIDFYEKTAISSKRRAQMTKYLQSNSNNWRWFDDRSGRWCSYSASNNSTIDSAWKSGETSVRFTAGRRRYTVQFTTMVQVNEETGNRRPVMLTLLRVPRLSKNSKSSNGQELEKTLEESKETDIKHKENKGNDIPLALESTNTEKEASLDETKIGEILIQGLTEDMVTVLIRACVSMLGVPVDPDTLHATLRLCLRLTRDHKYAMMFAELKSTRMILNLTQSSGFNGFTPLVTLLLRHIIEDPCTLRHTMEKVVRSAATSGAGSTTSGVVSGSLGSREINYILRVLGPAACRNPDIFTEVANCCIRIALPAPRGSGTASDDEFENLRIKGPNAVQLVKTTPLKPSSLPVIPDTIKEVIYDMLNALAAYHAPEEADKSDPKPGGTTQEVGQLLQDMGDDVYQQYRSLTRQSSDFDTQSGFSLNSQVFAADGAPAETSTTGTSQGEASTPEETREGKKDKEGDRTSEEGKQKSKGSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPHTQNAEDKDTPALARLFLASLAAAGSGTDAQVALVNEVKAALGRALAMAESTEKHARLQAVMCIISTIMESCPSTSSFYSSATAKTQHNGMNNIIRLFLKKGLVNDLARVPHSLDLSSPNMANTVNAALKPLETLSRIVNQPSSLFGSKSASSKNKSEQDAQGASQDSSSHQQDPGEPGEAEVQEEDHDVTQTEVADGDIMDGEAETDSVVIAGQPEVLSSQEMQVENELEDLIDELLERDGGSGNSTIIVSRSGEDESQEDVLMDEAPSNLSQASTLQANREDSMNILDPEDEEEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGSEMELDEDYPDMNASPLVRFERFDREDDLIIEFDNMFSSATDIPPSPGNIPTTHPLMVRHADHSSLTLGSGSSTTRLTQGIGRSQRTLRQLTANTGHTIHVHYPGNRQPNPPLILQRLLGPSAAADILQLSSSLPLQSRGRARLLVGNDDVHIIARSDDELLDDFFHDQSTATSQAGTLSSIPTALTRWTEECKVLDAESMHDCVSVVKVPIVNHLEFLRDEELEERREKRRKQLAEEETKIIDKGKEDKENRDQSAQCTVTKTNDSTEQNVSDGTPMPDSYPTTPSSTDAPTSESKETLGTLQPSQQQPALPPPPSLGEIPQELQSPAEEVANSTQLLMPIELEELGPTRPSGEAETTQMELSPAPTITSLSPERAEDSDALTAVSSQLEGSPMDTSSLASCTLEEAVGDTPAAGSSEQPTAGSSTPGDAPSVVAEVQGRPDVSRESNQPPEDSSPPASSESSSTRDSAVAISGADSRGILEEPLPSTSSEEEDPLAGISLPEGVDPSFLAALPDDIRREVLQNQLGIRPPTRSAPSSNSSAPAVVGNPGVTEVSPEFLAALPPAIQEEVLAQQRAEQQRRELAQNASSDTPMDPVTFIQTLPSDLRRSVLEDMEDSVLAVMPPDIAAEAQALRREQEARQRQLMHERLFGHSSTSALSAILRSPAFTSRLSGNRGVQYTRLAVQRGGTFQMGGSSSHNRPSGSNVDTLLRLRGRLLLDHEALSCLLVLLFVDEPKLNTSRLHRVLRNLCYHAQTRHWVIRSLLSILQRSSESELCIETPKLSTSEERGKKSSKSCASSSHENRPLDLLHKMESKSSNQLSWLSVSMDAALGCRTNIFQIQRSGGRKHTEKHASSGSTVHIHPQAAPVVCRHVLDTLIQLAKVFPSHFTQQRTKETNCESDRERGSKQACSPCSSQSSSSGICTDFWDLLVKLDNMNVSRKGKNSVKSVPVSSGGEGETSPHSLEASPLGQLMNMLSHPVIRRSSLLTEKLLRLLSLISIALPENKVSEVQTNSSNSGSSTAATSNTSTTTTTTTTATAPTPTPPAATTPVTSAPALVAATAISTITVAASTTVTTPTTATTTVSTSTTKGSKSPAKVGEGGSGIDFKMVSSGLTENQLQLSVEVLTSHSCSEEGLEDAANVLLQLSRGDSGTRDTVLKLLLNGARHLGYTLCKQIGTLLAELREYNLEQQRRAQCETLSPDGLPEEQPQTTKLKGKMQSRFDMAENVVIVASQKRPLGGRELQLPSMSMLTSKTSTQKFFLRVLQVIIQLRDDTRRANKKAKQTGRLGSSGLGSASSIQAAVRQLEAEADAIIQMVREGQRARRQQQAATSESSNQSETSVRREESPMDVDQPSPSAQDTQSIVISDGTPQGEKEKEEKPPELPLLSEQLSLDELWDMLGECLKELEESHDQHAVLVLQPAVEAFFLVHATERESKPPVRDTRESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSREPSSMHISSSLPPDTQKFLRFAETHRTVLNQILRQSTTHLADGPFAVLVDYIRVLDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA", "sequence_length": 4377, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c92edb7441548d2fbaf39a24981f8c2886cf6284f15431cd72592aa9fb949385", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/Q7TMY8.json", "taxon_id": "10090", "uniprot_accession": "Q7TMY8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf908-pf06012.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf908-pf06012.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf913-pf06025.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf913-pf06025.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/ubm-pf14377.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14377", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/ubm-pf14377.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q7Z6Z7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00632", "PF02825", "PF06012", "PF06025", "PF14377", "PF22562" ], "protein_name": "E3 ubiquitin-protein ligase HUWE1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "746b5a381bbaded30e5fe4ffc0898c70edad0766057c975d3845f9656cff3e60", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKVDRTKLKKTPTEAPADCRALIDKLKVCNDEQLLLELQQIKTWNIGKCELYHWVDLLDRFDGILADAGQTVENMSWMLVCDRPEREQLKMLLLAVLNFTALLIEYSFSRHLYSSIEHLTTLLASSDMQVVLAVLNLLYVFSKRSNYITRLGSDKRTPLLTRLQHLAESWGGKENGFGLAECCRDLHMMKYPPSATTLHFEFYADPGAEVKIEKRTTSNTLHYIHIEQLDKISESPSEIMESLTKMYSIPKDKQMLLFTHIRLAHGFSNHRKRLQAVQARLHAISILVYSNALQESANSILYNGLIEELVDVLQITDKQLMEIKAASLRTLTSIVHLERTPKLSSIIDCTGTASYHGFLPVLVRNCIQAMIDPSMDPYPHQFATALFSFLYHLASYDAGGEALVSCGMMEALLKVIKFLGDEQDQITFVTRAVRVVDLITNLDMAAFQSHSGLSIFIYRLEHEVDLCRKECPFVIKPKIQRPNTTQEGEEMETDMDGVQCIPQRAALLKSMLNFLKKAIQDPAFSDGIRHVMDGSLPTSLKHIISNAEYYGPSLFLLATEVVTVFVFQEPSLLSSLQDNGLTDVMLHALLIKDVPATREVLGSLPNVFSALCLNARGLQSFVQCQPFERLFKVLLSPDYLPAMRRRRSSDPLGDTASNLGSAVDELMRHQPTLKTDATTAIIKLLEEICNLGRDPKYICQKPSIQKADGTATAPPPRSNHAAEEASSEDEEEEEVQAMQSFNSTQQNETEPNQQVVGTEERIPIPLMDYILNVMKFVESILSNNTTDDHCQEFVNQKGLLPLVTILGLPNLPIDFPTSAACQAVAGVCKSILTLSHEPKVLQEGLLQLDSILSSLEPLHRPIESPGGSVLLRELACAGNVADATLSAQATPLLHALTAAHAYIMMFVHTCRVGQSEIRSISVNQWGSQLGLSVLSKLSQLYCSLVWESTVLLSLCTPNSLPSGCEFGQADMQKLVPKDEKAGTTQGGKRSDGEQDGAAGSMDASTQGLLEGIGLDGDTLAPMETDEPTASDSKGKSKITPAMAARIKQIKPLLSASSRLGRALAELFGLLVKLCVGSPVRQRRSHHAASTTTAPTPAARSTASALTKLLTKGLSWQPPPYTPTPRFRLTFFICSVGFTSPMLFDERKYPYHLMLQKFLCSGGHNALFETFNWALSMGGKVPVSEGLEHSDLPDGTGEFLDAWLMLVEKMVNPTTVLESPHSLPAKLPGGVQNFPQFSALRFLVVTQKAAFTCIKNLWNRKPLKVYGGRMAESMLAILCHILRGEPVIRERLSKEKEGSRGEEDTGQEEGGSRREPQVNQQQLQQLMDMGFTREHAMEALLNTSTMEQATEYLLTHPPPIMGGVVRDLSMSEEDQMMRAIAMSLGQDIPMDQRAESPEEVACRKEEEERKAREKQEEEEAKCLEKFQDADPLEQDELHTFTDTMLPGCFHLLDELPDTVYRVCDLIMTAIKRNGADYRDMILKQVVNQVWEAADVLIKAALPLTTSDTKTVSEWISQMATLPQASNLATRILLLTLLFEELKLPCAWVVESSGILNVLIKLLEVVQPCLQAAKEQKEVQTPKWITPVLLLIDFYEKTAISSKRRAQMTKYLQSNSNNWRWFDDRSGRWCSYSASNNSTIDSAWKSGETSVRFTAGRRRYTVQFTTMVQVNEETGNRRPVMLTLLRVPRLNKNSKNSNGQELEKTLEESKEMDIKRKENKGNDTPLALESTNTEKETSLEETKIGEILIQGLTEDMVTVLIRACVSMLGVPVDPDTLHATLRLCLRLTRDHKYAMMFAELKSTRMILNLTQSSGFNGFTPLVTLLLRHIIEDPCTLRHTMEKVVRSAATSGAGSTTSGVVSGSLGSREINYILRVLGPAACRNPDIFTEVANCCIRIALPAPRGSGTASDDEFENLRIKGPNAVQLVKTTPLKPSPLPVIPDTIKEVIYDMLNALAAYHAPEEADKSDPKPGVMTQEVGQLLQDMGDDVYQQYRSLTRQSSDFDTQSGFSINSQVFAADGASTETSASGTSQGEASTPEESRDGKKDKEGDRASEEGKQKGKGSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPHTQNAEDKDTPALARLFLASLAAAGSGTDAQVALVNEVKAALGRALAMAESTEKHARLQAVMCIISTIMESCPSTSSFYSSATAKTQHNGMNNIIRLFLKKGLVNDLARVPHSLDLSSPNMANTVNAALKPLETLSRIVNQPSSLFGSKSASSKNKSEQDAQGASQDSSSNQQDPGEPGEAEVQEEDHDVTQTEVADGDIMDGEAETDSVVIAGQPEVLSSQEMQVENELEDLIDELLERDGGSGNSTIIVSRSGEDESQEDVLMDEAPSNLSQASTLQANREDSMNILDPEDEEEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGSEMELDEDYPDMNASPLVRFERFDREDDLIIEFDNMFSSATDIPPSPGNIPTTHPLMVRHADHSSLTLGSGSSTTRLTQGIGRSQRTLRQLTANTGHTIHVHYPGNRQPNPPLILQRLLGPSAAADILQLSSSLPLQSRGRARLLVGNDDVHIIARSDDELLDDFFHDQSTATSQAGTLSSIPTALTRWTEECKVLDAESMHDCVSVVKVSIVNHLEFLRDEELEERREKRRKQLAEEETKITDKGKEDKENRDQSAQCTASKSNDSTEQNLSDGTPMPDSYPTTPSSTDAATSESKETLGTLQSSQQQPTLPTPPALGEVPQELQSPAGEGGSSTQLLMPVEPEELGPTRPSGEAETTQMELSPAPTITSLSPERAEDSDALTAVSSQLEGSPMDTSSLASCTLEEAVGDTSAAGSSEQPRAGSSTPGDAPPAVAEVQGRSDGSGESAQPPEDSSPPASSESSSTRDSAVAISGADSRGILEEPLPSTSSEEEDPLAGISLPEGVDPSFLAALPDDIRREVLQNQLGIRPPTRTAPSTNSSAPAVVGNPGVTEVSPEFLAALPPAIQEEVLAQQRAEQQRRELAQNASSDTPMDPVTFIQTLPSDLRRSVLEDMEDSVLAVMPPDIAAEAQALRREQEARQRQLMHERLFGHSSTSALSAILRSPAFTSRLSGNRGVQYTRLAVQRGGTFQMGGSSSHNRPSGSNVDTLLRLRGRLLLDHEALSCLLVLLFVDEPKLNTSRLHRVLRNLCYHAQTRHWVIRSLLSILQRSSESELCIETPKLTTSEEKGKKSSKSCGSSSHENRPLDLLHKMESKSSNQLSWLSVSMDAALGCRTNIFQIQRSGGRKHTEKHASGGSTVHIHPQAAPVVCRHVLDTLIQLAKVFPSHFTQQRTKETNCESDRERGNKACSPCSSQSSSSGICTDFWDLLVKLDNMNVSRKGKNSVKSVPVSAGGEGETSPYSLEASPLGQLMNMLSHPVIRRSSLLTEKLLRLLSLISIALPENKVSEAQANSGSGASSTTTATSTTSTTTTTAASTTPTPPTAPTPVTSAPALVAATAISTIVVAASTTVTTPTTATTTVSISPTTKGSKSPAKVSDGGSSSTDFKMVSSGLTENQLQLSVEVLTSHSCSEEGLEDAANVLLQLSRGDSGTRDTVLKLLLNGARHLGYTLCKQIGTLLAELREYNLEQQRRAQCETLSPDGLPEEQPQTTKLKGKMQSRFDMAENVVIVASQKRPLGGRELQLPSMSMLTSKTSTQKFFLRVLQVIIQLRDDTRRANKKAKQTGRLGSSGLGSASSIQAAVRQLEAEADAIIQMVREGQRARRQQQAATSESSQSEASVRREESPMDVDQPSPSAQDTQSIASDGTPQGEKEKEERPPELPLLSEQLSLDELWDMLGECLKELEESHDQHAVLVLQPAVEAFFLVHATERESKPPVRDTRESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSREPSSMHISSSLPPDTQKFLRFAETHRTVLNQILRQSTTHLADGPFAVLVDYIRVLDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA", "sequence_length": 4374, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "746b5a381bbaded30e5fe4ffc0898c70edad0766057c975d3845f9656cff3e60", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Z6Z7.json", "taxon_id": "9606", "uniprot_accession": "Q7Z6Z7", "uniprot_release": "2026_03" } ], "pfam_id": "PF06012", "short_name": "DUF908", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/wxg100-family-type-vii-secretion-target-tigr03930.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR03930", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/wxg100-family-type-vii-secretion-target-tigr03930.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/wxg100-pf06013.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06013", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/wxg100-pf06013.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/esat-6-like-superfamily-ipr036689.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036689", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/esat-6-like-superfamily-ipr036689.yaml" } ], "pfam_ids": [ "PF06013" ], "protein_name": "Protein YukE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGLIRVTPEELRAMAKQYGVESQEVLNQVDRLNRMISDLKSMWEGASSEAFADQYEQLKPSFIKMSDLLQDVNQQLDQTANTLESTDQDIANQIRG", "sequence_length": 97, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4977c356759e2c2409ab55239ee959169031887a4978faa6fed3cc064188039c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0SP85.json", "taxon_id": "224308", "uniprot_accession": "C0SP85", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/wxg100-family-type-vii-secretion-target-tigr03930.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR03930", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/wxg100-family-type-vii-secretion-target-tigr03930.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/wxg100-pf06013.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06013", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/wxg100-pf06013.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/esat-6-like-superfamily-ipr036689.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036689", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/esat-6-like-superfamily-ipr036689.yaml" } ], "pfam_ids": [ "PF06013" ], "protein_name": "Uncharacterized protein YfjA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSYKVIELANKYSAAAEEVRSSKMLLESRLSALGDAWQGKARDSFDQDFEETKAAYDQFEQELLETSQELKAAAVKIEERKAEIARMEELERKAREERHKLGR", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c35ac51ac41e7bf0d06b66d59aeb0e06893e1bee5867aae86e8a069cf3845cc4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31558.json", "taxon_id": "224308", "uniprot_accession": "O31558", "uniprot_release": "2026_03" } ], "pfam_id": "PF06013", "short_name": "WXG100", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yqgq-like-pf06014.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06014", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yqgq-like-pf06014.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/yqgq-like-superfamily-ipr023164.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023164", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yqgq-like-superfamily-ipr023164.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/yqgq-like-1-10-287-760.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.287.760", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yqgq-like-1-10-287-760.yaml" } ], "pfam_ids": [ "PF06014" ], "protein_name": "Uncharacterized protein YqgQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTFYDVQQLLKTFGHIVYFGDRELEIEFMLDELKELYMNHMIEKEQWARAAAVLRKELEQTKNGRDFYKG", "sequence_length": 71, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e84e3ffe9319cfe488ff6ab7557cca6d95fd5a430262aae6f52358706a806af", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54494.json", "taxon_id": "224308", "uniprot_accession": "P54494", "uniprot_release": "2026_03" } ], "pfam_id": "PF06014", "short_name": "YqgQ-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermoproteus tenax (strain ATCC 35583 / DSM 2078 / JCM 9277 / NBRC 100435 / Kra 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/csa1-pf06023.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06023", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/csa1-pf06023.yaml" } ], "pfam_ids": [ "PF06023" ], "protein_name": "CRISPR-associated exonuclease Csa1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLTLLEIARLLRRAKVTQGPAEVSPELRGWAYDRQPVKPPAYLGLALSDFAYGYCPTGRSLYLKYVLGERPQPTKPLAEGQALHAVLFKALEDFRRYVYSGAPMSPPGEGMPEDLRAKAEALYRYIAVRLTGEYQYVLASRLARSRDAAAFYAAPIAAQIAVDGAPLGLSYVVADGVALGAVVEFKFGPSQNVDVALAGYAMAIEAEYGVPIDYGIHVQIAVDGQVEYRASAYVLGDAPRAKFLEARDEAIDVVASARDPGPAPQCPKTCPYYSVCRS", "sequence_length": 278, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cfc84469fae7dc198363e717de2e09df42b4166bc917d964b0cf3e10ce5298a8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G4RJY8.json", "taxon_id": "768679", "uniprot_accession": "G4RJY8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/csa1-pf06023.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06023", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/csa1-pf06023.yaml" } ], "pfam_ids": [ "PF06023" ], "protein_name": "CRISPR-associated exonuclease Csa1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFFTHSDMLLLSKRIKKLPKNVDEELRGWNWSEPPVYTRSLSQVSISEMVYCSTLRNVYLKVKGFRGEIGRQILQGSLIHTIYAIGIEAIKRFIYSRESIDGSTLRTLMGDEFYSLLKDLREEEGIYAKVLWDHITNIYSAELDRVRSKFTNLTRDSLVSQVVPFYVEFPVDGSLLGLTNLRVDAFIPHLPLIAEMKTGKYRYTHELSLAGYALAIESQYEIPIDFGYLCYVTVTEKEVKNNCKLIPISDSLRSEFLDMRDKAQDIMDKGVDPGIAKDCESDCMFYKVCHP", "sequence_length": 291, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3399fc018020e433c8aa91c60b2607157a9c132282fd3d5044c83b1b3744f5fd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q97YD4.json", "taxon_id": "273057", "uniprot_accession": "Q97YD4", "uniprot_release": "2026_03" } ], "pfam_id": "PF06023", "short_name": "Csa1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06024", "short_name": "Orf78", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf913-pf06025.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf913-pf06025.yaml" } ], "pfam_ids": [ "PF00632", "PF02825", "PF06012", "PF06025", "PF14377", "PF22562" ], "protein_name": "E3 ubiquitin-protein ligase HUWE1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKVDRTKLKKTPTEAPADCRALIDKLKVCNDEQLLLELQQIKTWNIGKCELYHWVDLLDRFDGILADAGQTVENMSWMLVCDRPEKEQLKMLLLAVLNFTALLIEYSFSRHLYSSIEHLTTLLASSDMQVVLAVLNLLYVFSKRSNYITRLGSDKRTPLLTRLQHLAESWGGKENGFGLAECCRDLQMLKYPPSATTLHFEFYADPGAEVKIEKRTTSNTLHYIHIEQLDKISESPSEIMESLTKMYSIPKDKQMLLFTHIRLAHGFSNHRKRLQAVQARLHAISILVYSNALQESANSILYNGLIEELVDVLQITDKQLMEIKAASLRTLTSIVHLERTPKLSSIIDCTGTASYHGFLPVLVRNCIQAMIDPSMDPYPHQFATALFSFLYHLASYDAGGEALVSCGMMEALLKVIKFLGDEQDQITFVTRAVRVVDLITNLDMAAFQSHSGLSIFIYRLEHEVDLCRKECPFVIKPKIQRPSTTQEGEEMETDMDVADVTMESSPGSSISMEHRLDVELRASSSNSSTSISGPGPGPGPGPGPGPGPGPGPGPGPGLGPSLGPGPGPGPRPGVQCIPQRAALLKSMLNFLKKAIQDPAFSDGIRHVMDGSLPTSLKHIISNAEYYGPSLFLLATEVVTVFVFQEPSLLSSLQDNGLTDVMLHALLIKDVPATREVLGSLPNVFSALCLNARGLQSFVQCQPFERLFKVLLSPDYLPAMRRRRSSDPLGDTASNLGSAVDELMRHQPTLKTDATTAIIKLLEEICNLGRDPKYICQKPSIQKADGTTSAPPPRSNHAAEEASSEDEEEEEVQAMQSFNSAQQNETEPNQQVVGTEERIPIPLMDYILNVMKFVESILSNNTTDDHCQEFVNQKGLLPLVTILGLPNLPIDFPTSAACQAVAGVCKSILTLSHEPKVLQEGLLQLDLILSSLEPLHRPIESPGGSVLLRELACAGNVADATLSAQATPLLHALTAAHAYIMMFVHTCRVGQSEIRSISVNQWGSQLGLSVLSKLSQLYCSLVWESTVLLSLCTPNSLPSGCEFGQADMQKLVPKDEKAGTTQGGKRSDGEQDGTAGSMDASAQGLLEGIELDGDTLAPMETDEPSSSDSKGKSKITPAMAARIKQIKPLLSASSRLGRALAELFGLLVKLCVGSPVRQRRSHHAASTTTAPTPAARSTASALTKLLTKGLSWQPPPYTPTPRFRLTFFICSVGFTSPMLFDERKYPYHLMLQKFLCSGGHNALFETFNWALSMGGKVPVSEGLEHSDLPDGTGEFLDAWLMLVEKMVNPTTVLESPHSLPAKLPGGVQSFPQFSALRFLVVTQKAAFTCIKNLWNRKPLKVYGGRMAESMLAILCHILRGEPVIRERLSKEKEGSRGEEEAGQEEGGSRREPQVNQQQLQQLMDMGFTREHAMEALLNTSTMEQATEYLLTHPPPIIGGVVRDLSMSEEDQMMRAIAMSLGQDIPMDQRAESPEEVACRKEEEERKAREKQEEEEAKCLEKFQDADPLEQDELHTFTDTMLPGCFHLLDELPDTVYRVCDLIMTAIKRNGADYRDMILKQVVNQVWEAADVLIKAALPLTTSDTKTVSEWISQMATLPQASNLATRILLLTLLFEELKLPCAWVVESSGILNVLIKLLEVVQPCLQAAKEQKEVQTPKWITPVLLLIDFYEKTAISSKRRAQMTKYLQSNSNNWRWFDDRSGRWCSYSASNNSTIDSAWKSGETSVRFTAGRRRYTVQFTTMVQVNEETGNRRPVMLTLLRVPRLSKNSKSSNGQELEKTLEESKETDIKRKENKGNDIPLALESTNTEKDASLEETKIGEILIQGLTEDMVTVLIRACVSMLGVPVDPDTLHATLRLCLRLTRDHKYAMMFAELKSTRMILNLTQSSGFNGFTPLVTLLLRHIIEDPCTLRHTMEKVVRSAATSGAGSTTSGVVSGSLGSREINYILRVLGPAACRNPDIFTEVANCCIRIALPAPRGSGTASDDEFENLRIKGPNAVQLVKTTPLKPSSLPVIPDTIKEVIYDMLNALAAYHAPEEADKSDPKPGGMTQEVGQLLQDMGDDVYQQYRSLTRQSSDFDTQSGFSLNSQVFAADGAPAETSTTGTSQGEGASTPEETREGKKDKEGDRTSEEGKQKGKGSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPHTQNAEDKDTPALARLFLASLAAAGSGTDAQVALVNEVKAALGRALAMAESTEKHARLQAVMCIISTIMESCPSTSSFYSSATAKTQHNGMNNIIRLFLKKGLVNDLARVPHSLDLSSPNMANTVNAALKPLETLSRIVNQPSSLFGSKSASSKSKSEQDAQGASQDSSSHQQDPGEPGEAEVQEEDHDVTQTEVADGDIMDGEAETDSVVIAGQPEVLSSQEMQVENELEDLIDELLERDGGSGNSTIIVSRSGEDESQEDVLMDEAPSNLSQASTLQANREDSMNILDPEDEEEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGSEMELDEDYPDMNASPLVRFERFDREDDLIIEFDNMFSSATDIPPSPGNIPTTHPLMVRHADHSSLTLGSGSSTTRLTQGIGRSQRTLRQLTANTGHTIHVHYPGNRQPNPPLILQRLLGPSAAADILQLSSSLPLQSRGRARLLVGNDDVHIIARSDDELLDDFFHDQSTATSQAGTLSSIPTALTRWTEECKVLDAESMHDCVSVVKVPIVNHLEFLRDEELEERREKRRKQLAEEETKIIDKGKEDKENRDQSAQCTVSKTNDSTEQNVSDGTPMPDSYPTTPSSTDAPTSESKETLGTLQPSQQQPTLPPPPSLGEISQELQSPAEEVGNSTQLLMPIELEELGPTRPSGEAETTQMELSPAPTITSLSPERAEDSDALTAVSSQLEGSPMDTSSLASCTLEEAVGDTPAAGSSEQPTAGSSTPGDAPSVGADVQGRPDVSRESTQPPEDSSPPASSESSSTRDSAVAISGADSRGILEEPLPSTSSEEEDPLAGISLPEGVDPSFLAALPDDIRREVLQNQLGIRPPTRTAPSTNSSTPAVVGNPGVTEVSPEFLAALPPAIQEEVLAQQRAEQQRRELAQNASSDTPMDPVTFIQTLPSDLRRSVLEDMEDSVLAVMPPDIAAEAQALRREQEARQRQLMHERLFGHSSTSALSAILRSPAFTSRLSGNRGVQYTRLAVQRGGTFQMGGSSSHNRPSGSNVDTLLRLRGRLLLDHEALSCLLVLLFVDEPKLNTSRLHRVLRNLCYHAQTRHWVIRSLLSILQRSSESELCIETPKLSTSEERGKKSSKSCASSSHENRPLDLLHKMESKSSNQLSWLSVSMDAALGCRTNIFQIQRSGGRKHTEKHASSGSTVHIHPQAAPVVCRHVLDTLIQLAKVFPSHFTQQRTKETNCESDRERGSKQACSPCSSQSSSSGICTDFWDLLVKLDNMNVSRKGKNSVKSVPVSAGGEGETSLHSLEASPLGQLMNMLSHPVIRRSSLLTEKLLRLLSLISIALPENKVSEVQTNSSNSGSSTAATSNTSTTTTTTTATAPTPTPPAATTPVTSAPALVAATAISTITVAASTTVTTPTTATTTVSTSTTKGNKSPAKVGEGGSSSVDFKMVSSGLTENQLQLSVEVLTSHSCSEEGLEDAANVLLQLSRGDSGTRDTVLKLLLNGARHLGYTLCKQIGTLLAELREYNLEQQRRAQCETLSPDGLPEEQPQTTKLKGKMQSRFDMAENVVIVASQKRPLGGRELQLPSMSMLTSKTSTQKFFLRVLQVIIQLRDDTRRANKKAKQTGRLGSSGLGSASSIQAAVRQLEAEADAIIQMVREGQRARRQQQAATSESSNQSETSVRREESPMDVDQPSPSAQDTQSIVVSDGTPQGEKEKEERPPELPLLSEQLSLDELWDMLGECLKELEESHDQHAVLVLQPAVEAFFLVHATERESKPPVRDTRESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSREPSSMHISSSLPPDTQKFLRFAETHRTVLNQILRQSTTHLADGPFAVLVDYIRVLDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA", "sequence_length": 4454, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60048164b6f98ce69e087742e64e750122c0b55e098ccb427020e9eecf5264ac", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P51593.json", "taxon_id": "10116", "uniprot_accession": "P51593", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf908-pf06012.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf908-pf06012.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q03280", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00632", "PF06012", "PF06025", "PF14377" ], "protein_name": "E3 ubiquitin-protein ligase TOM1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "93818cb1b0a397b84cfc3466e2efc65c220a0e7d35ef8bf050f6e211e5145a28", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVLFTRCEKARKEKLAAGYKPLVDYLIDCDTPTFLERIEAIQEWDRSRDDLYVWIPILDRMDGLLLKVAEKYKYKQDPKKECEVKLVEMEAHDVDYCLKMLKFTRRLLLNTENRFVYSSGDVLMYLLNCPNFTIKLAVMRILAILGERFVIAREKIVAHNIFGDHNLRKKTLKLALSLSSSVMDEDGEHFSLVDLYFDKKKVPQKWRKLRFTHYTSNDFKKSSQQKNNINETQTSIKKVTMTTQELCEHSLQQIFDKGMALLPAESWFDFSIKASVAKAFSDDSGENIDLRNIIIETKLNAIAFVNTIFSPPQVSSKLFELDPYAFNSLTDLISLSETKIPKELRTDALFTLECISLKHVWCSDIIRNLGGNISHGLLFQILRYIAKTLREATDEIDEEYNVRFFYLISNLADVKPLHESLFAAGLIPTLLEIVSIRNCPYKRTLASATHLLETFIDNSETTTEFIENDGFTMLITSVANEIDFTLAHPETWQPPKYSVVYYSISFRELAYIRSLLKLVLKLLSTDSGDRIRNLIDSPILVSLKKILENKLVFGLTLITYTLDVVQKVINSEPTIYPVLVEAGLIPYVIDNFPKLIGPSAELLSLLPDVVSAICLNPEGLKQVKEKGLINNLFDFLLDADHARILTGGDRSTEYGTDIDELARHYPDLKANIVEALCNVIRKMPSTFRNEREFLFTSPKDQKYFFHRKNEEILTDKEEHEPAYWELLDKGTMLDTFTSVLFGMSLGNGSFSQVPQHLEARDFLAIIFMENPPYEYFTSVAISNVTEVLQYLDEKYEDYAFMDVMKVLNDQLENLNDFLNSPNDRSFFLERDGENSVRSCHSKLCRLAAILNIVTNVYIDLTTLSCKRIMQIYSYFDKRGFSLIKNLKLLFQKCALEEMYIRQHMPDSVITETMPLPIVDVSGDGPPLQIYIDDPKKGDQKGKITSVKTRNTLQMRTILYTLQSNTAILFRCFLRLSHSRNMDLEHKDLTTEVHIFENVVENVIEMLKATELEGHLPYILVLLNFNTFVFTIPKASPNSTEILQTIPAYIFYQKGGYLLYLHIIRDLFTRMTKIKDLSSLDNINYIDESNGILTLSCLINALTFYNKSMQTETMENVQSIGKYYVSIDDDYNIMKALTVPIKVMALAMILDLDKSDSLFKTQSRNVPYSVFKQLLSMLKNIFTNVNIYTKELYELHWDLIFPPIKKISLFEQVGIPGDVAANYLTDTGDDLPADNSIGLFSPEQWEKYKKLIGEDKSIYYPQPMQAQYYKGCSSKELDELRDTFFNDGLPSRIFTVLPFYPKLVNAFAKTLLQIFTKYDEPTEVFAGRILDRILETDLDDPATLSSLIHLFGIFLNEKYIYQKASHLMQRFIEYLEKSLKPEHVNTPWFSKALYVYEIILAKSELPHLEELSKDVLLRYPLLSMAKVFRIPDPMKQKLFDILIRVSDISNFYSALATSRILIFYSRDELYANNIARSGILSRLLKVIGSFQKLDKINFLESSFLLLTRRCFETTENVDALIRAEINRSFTARPLGGGDDAVRELTTILEEKAHVVMRSPSQFIDVLCETARFHEFDDQGALVDYSLKRFLGEKDKNTQASSTEKSDIYERTGIMHLLLSQLMAASEKDWLSEPANSSDLPENKKAQLDPSRNPVCAYMIFLLKLLVELVSSYNQCKFEFLTFSRRNTYAERPRPRTTAINFFLYRLLDKPVGTDHDKHEAKRREVIGMLARSVIIGFLATVQDDRTTKTDVKLADPHMNFIRKFAIEAIIKAIRNATSSSKLLESNHLKLDMWFRIITSMVYVQAPYLRQLLDSNKVEADQYQLCKLVIDLGLPSVITEAMASIDLNYPFSKKIFNVAVEALNTISSTRNNFSEHFKIEDHDEVEDEVDESDKEEIPDMFKNSALGMYDVEDIEEDDDDDTSLIGDDDAMAFVDSDNGFEVVFSDEDDDMGEEDADDARSDSEENELSSEMQSSTADGTDVDYEVDDADGLIINIDQPSGDDEEMADYDANISHSSHSENEDDASMDVIEVYDDELSSGYDVDLSDYDVDESDWDSGLSSLSISDEDSESSEDEPINSTRMGDSRRRWLIAEGVELTDDSQGESEEDDRGVFRGIEHIFSNENEPLFRVHDEMRHRNHHRSINRTHFHSAMSAPSLSLLNRGRRNQSNLINPLGPTGLEQVENDISDQVTVAGSGSRPRSHHLHFSEVLVSGSFFDEPVLDGIILKSTVSRWKDIFDMFYDSKTYANCIIPTVINRLYKVSLALQKDLENKREQEKLKNKNLLFNEAKVESHNSSDAISVEQDDIQESNVTHDDHEPVYVTIQGSEVDIGGTDIDPEFMNALPDDIRADVFAQHVRERRAEARLNSDHNVHSREIDSDFLEAIPEDIREGILDTEAEEQRMFGRIGSSADVIRADDDVSNNDEEVENGLDHGNSNDRNNADPEKKKPARIYFAPLIDRAGIASLMKSVFISKPYIQREIYHELFYRLCSSKQNRNDLMNTFLFILSEGIIDQHSLEKVYNIISSRAMGHAKTTTVRQLPSDCTPLTVANQTIEILQSLIDADSRLKYFLIAEHDNLIVNKANNKSRKEALPDKKLRWPLWHLFSLLDRKLITDESVLMDLLTRILQVCTKTLAVLSTSSNGKENLSKKFHLPSFDEDDLMKILSIIMLDSCTTRVFQQTLNIIYNLSKLQGCMSIFTKHLVSLAISIMSKLKSALDGLSREVGTITTGMEINSELLQKFTLPSSDQAKLLKILTTVDFLYTHKRKEEERNVKDLQSLYDKMNGGPVWSSLSECLSQFEKSQAINTSATILLPLIESLMVVCRRSDLSQNRNTAVKYEDAKLLDFSKTRVENLFFPFTDAHKKLLNQMIRSNPKLMSGPFALLVKNPKVLDFDNKRYFFNAKLKSDNQERPKLPITVRREQVFLDSYRALFFKTNDEIKNSKLEITFKGESGVDAGGVTREWYQVLSRQMFNPDYALFLPVPSDKTTFHPNRTSGINPEHLSFFKFIGMIIGKAIRDQCFLDCHFSREVYKNILGRPVSLKDMESLDPDYYKSLVWILENDITDIIEETFSVETDDYGEHKVINLIEGGKDIIVTEANKQDYVKKVVEYKLQTSVKEQMDNFLVGFYALISKDLITIFDEQELELLISGLPDIDVDDWKNNTTYVNYTATCKEVSYFWRAVRSFDAEERAKLLQFVTGTSKVPLNGFKELSGVNGVCKFSIHRDFGSSERLPSSHTCFNQLNLPPYESYETLRGSLLLAINEGHEGFGLA", "sequence_length": 3268, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "93818cb1b0a397b84cfc3466e2efc65c220a0e7d35ef8bf050f6e211e5145a28", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q03280.json", "taxon_id": "559292", "uniprot_accession": "Q03280", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf908-pf06012.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf908-pf06012.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf913-pf06025.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf913-pf06025.yaml" } ], "pfam_ids": [ "PF00632", "PF02825", "PF06012", "PF06025", "PF14377", "PF22562" ], "protein_name": "E3 ubiquitin-protein ligase HUWE1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKVDRTKLKKTPTEAPADCRALIDKLKVCNDEQLLLELQQIKTWNIGKCELYHWVDLLDRFDGILADAGQTVENMSWMLVCDRPEKEQLKMLLLAVLNFTALLIEYSFSRHLYSSIEHLTTLLASSDMQVVLAVLNLLYVFSKRSNYITRLGSDKRTPLLTRLQHLAESWGGKENGFGLAECCRDLQMLKYPPSATTLHFEFYADPGAEVKIEKRTTSNTLHYIHIEQLDKISESPSEIMESLTKMYSIPKDKQMLLFTHIRLAHGFSNHRKRLQAVQARLHAISILVYSNALQESANSILYNGLIEELVDVLQITDKQLMEIKAASLRTLTSIVHLERTPKLSSIIDCTGTASYHGFLPVLVRNCIQAMIDPSMDPYPHQFATALFSFLYHLASYDAGGEALVSCGMMEALLKVIKFLGDEQDQITFVTRAVRVVDLITNLDMAAFQSHSGLSIFIYRLEHEVDLCRKECPFVIKPKIQRPSTTQEGEEMETDMDGVQCIPQRAALLKSMLNFLKKAIQDPAFSDGIRHVMDGSLPTSLKHIISNAEYYGPSLFLLATEVVTVFVFQEPSLLSSLQDNGLTDVMLHALLIKDVPATREVLGSLPNVFSALCLNARGLQSFVQCQPFERLFKVLLSPDYLPAMRRRRSSDPLGDTASNLGSAVDELMRHQPTLKTDATTAIIKLLEEICNLGRDPKYICQKPSIQKADGTATAPPPRSNHAAEEASSEDEEEEEVQAMQSFNSAQQNETEPNQQVVGTEERIPIPLMDYILNVMKFVESILSNNTTDDHCQEFVNQKGLLPLVTILGLPNLPIDFPTSAACQAVAGVCKSILTLSHEPKVLQEGLLQLDLILSSLEPLHRPIESPGGSVLLRELACAGNVADATLSAQATPLLHALTAAHAYIMMFVHTCRVGQSEIRSISVNQWGSQLGLSVLSKLSQLYCSLVWESTVLLSLCTPNSLPSGCEFGQADMQKLVPKDEKAGTTQGGKRSDGEQDGTAGSMDASAQGLLEGIELDGDTLAPMETDEPSSSDSKGKSKITPAMAARIKQIKPLLSASSRLGRALAELFGLLVKLCVGSPVRQRRSHHAASTTTAPTPAARSTASALTKLLTKGLSWQPPPYTPTPRFRLTFFICSVGFTSPMLFDERKYPYHLMLQKFLCSGGHNALFETFNWALSMGGKVPVSEGLEHSDLPDGTGEFLDAWLMLVEKMVNPTTVLESPHSLPAKLPGGVQSFPQFSALRFLVVTQKAAFTCIKNLWNRKPLKVYGGRMAESMLAILCHILRGEPVIRERLSKEKEGSRGEEEAGQEEGGSRREPQVNQQQLQQLMDMGFTREHAMEALLNTSTMEQATEYLLTHPPPIIGGVVRDLSMSEEDQMMRAIAMSLGQDIPMDQRAESPEEVACRKEEEERKAREKQEEEEAKCLEKFQDADPLEQDELHTFTDTMLPGCFHLLDELPDTVYRVCDLIMTAIKRNGADYRDMILKQVVNQVWEAADVLIKAALPLTTSDTKTVSEWISQMATLPQASNLATRILLLTLLFEELKLPCAWVVESSGILNVLIKLLEVVQPCLQAAKEQKEVQTPKWITPVLLLIDFYEKTAISSKRRAQMTKYLQSNSNNWRWFDDRSGRWCSYSASNNSTIDSAWKSGETSVRFTAGRRRYTVQFTTMVQVNEETGNRRPVMLTLLRVPRLSKNSKSSNGQELEKTLEESKETDIKHKENKGNDIPLALESTNTEKEASLDETKIGEILIQGLTEDMVTVLIRACVSMLGVPVDPDTLHATLRLCLRLTRDHKYAMMFAELKSTRMILNLTQSSGFNGFTPLVTLLLRHIIEDPCTLRHTMEKVVRSAATSGAGSTTSGVVSGSLGSREINYILRVLGPAACRNPDIFTEVANCCIRIALPAPRGSGTASDDEFENLRIKGPNAVQLVKTTPLKPSSLPVIPDTIKEVIYDMLNALAAYHAPEEADKSDPKPGGTTQEVGQLLQDMGDDVYQQYRSLTRQSSDFDTQSGFSLNSQVFAADGAPAETSTTGTSQGEASTPEETREGKKDKEGDRTSEEGKQKSKGSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPHTQNAEDKDTPALARLFLASLAAAGSGTDAQVALVNEVKAALGRALAMAESTEKHARLQAVMCIISTIMESCPSTSSFYSSATAKTQHNGMNNIIRLFLKKGLVNDLARVPHSLDLSSPNMANTVNAALKPLETLSRIVNQPSSLFGSKSASSKNKSEQDAQGASQDSSSHQQDPGEPGEAEVQEEDHDVTQTEVADGDIMDGEAETDSVVIAGQPEVLSSQEMQVENELEDLIDELLERDGGSGNSTIIVSRSGEDESQEDVLMDEAPSNLSQASTLQANREDSMNILDPEDEEEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGSEMELDEDYPDMNASPLVRFERFDREDDLIIEFDNMFSSATDIPPSPGNIPTTHPLMVRHADHSSLTLGSGSSTTRLTQGIGRSQRTLRQLTANTGHTIHVHYPGNRQPNPPLILQRLLGPSAAADILQLSSSLPLQSRGRARLLVGNDDVHIIARSDDELLDDFFHDQSTATSQAGTLSSIPTALTRWTEECKVLDAESMHDCVSVVKVPIVNHLEFLRDEELEERREKRRKQLAEEETKIIDKGKEDKENRDQSAQCTVTKTNDSTEQNVSDGTPMPDSYPTTPSSTDAPTSESKETLGTLQPSQQQPALPPPPSLGEIPQELQSPAEEVANSTQLLMPIELEELGPTRPSGEAETTQMELSPAPTITSLSPERAEDSDALTAVSSQLEGSPMDTSSLASCTLEEAVGDTPAAGSSEQPTAGSSTPGDAPSVVAEVQGRPDVSRESNQPPEDSSPPASSESSSTRDSAVAISGADSRGILEEPLPSTSSEEEDPLAGISLPEGVDPSFLAALPDDIRREVLQNQLGIRPPTRSAPSSNSSAPAVVGNPGVTEVSPEFLAALPPAIQEEVLAQQRAEQQRRELAQNASSDTPMDPVTFIQTLPSDLRRSVLEDMEDSVLAVMPPDIAAEAQALRREQEARQRQLMHERLFGHSSTSALSAILRSPAFTSRLSGNRGVQYTRLAVQRGGTFQMGGSSSHNRPSGSNVDTLLRLRGRLLLDHEALSCLLVLLFVDEPKLNTSRLHRVLRNLCYHAQTRHWVIRSLLSILQRSSESELCIETPKLSTSEERGKKSSKSCASSSHENRPLDLLHKMESKSSNQLSWLSVSMDAALGCRTNIFQIQRSGGRKHTEKHASSGSTVHIHPQAAPVVCRHVLDTLIQLAKVFPSHFTQQRTKETNCESDRERGSKQACSPCSSQSSSSGICTDFWDLLVKLDNMNVSRKGKNSVKSVPVSSGGEGETSPHSLEASPLGQLMNMLSHPVIRRSSLLTEKLLRLLSLISIALPENKVSEVQTNSSNSGSSTAATSNTSTTTTTTTTATAPTPTPPAATTPVTSAPALVAATAISTITVAASTTVTTPTTATTTVSTSTTKGSKSPAKVGEGGSGIDFKMVSSGLTENQLQLSVEVLTSHSCSEEGLEDAANVLLQLSRGDSGTRDTVLKLLLNGARHLGYTLCKQIGTLLAELREYNLEQQRRAQCETLSPDGLPEEQPQTTKLKGKMQSRFDMAENVVIVASQKRPLGGRELQLPSMSMLTSKTSTQKFFLRVLQVIIQLRDDTRRANKKAKQTGRLGSSGLGSASSIQAAVRQLEAEADAIIQMVREGQRARRQQQAATSESSNQSETSVRREESPMDVDQPSPSAQDTQSIVISDGTPQGEKEKEEKPPELPLLSEQLSLDELWDMLGECLKELEESHDQHAVLVLQPAVEAFFLVHATERESKPPVRDTRESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSREPSSMHISSSLPPDTQKFLRFAETHRTVLNQILRQSTTHLADGPFAVLVDYIRVLDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA", "sequence_length": 4377, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c92edb7441548d2fbaf39a24981f8c2886cf6284f15431cd72592aa9fb949385", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/Q7TMY8.json", "taxon_id": "10090", "uniprot_accession": "Q7TMY8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf908-pf06012.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf908-pf06012.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf913-pf06025.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf913-pf06025.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/ubm-pf14377.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14377", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/ubm-pf14377.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q7Z6Z7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00632", "PF02825", "PF06012", "PF06025", "PF14377", "PF22562" ], "protein_name": "E3 ubiquitin-protein ligase HUWE1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "746b5a381bbaded30e5fe4ffc0898c70edad0766057c975d3845f9656cff3e60", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKVDRTKLKKTPTEAPADCRALIDKLKVCNDEQLLLELQQIKTWNIGKCELYHWVDLLDRFDGILADAGQTVENMSWMLVCDRPEREQLKMLLLAVLNFTALLIEYSFSRHLYSSIEHLTTLLASSDMQVVLAVLNLLYVFSKRSNYITRLGSDKRTPLLTRLQHLAESWGGKENGFGLAECCRDLHMMKYPPSATTLHFEFYADPGAEVKIEKRTTSNTLHYIHIEQLDKISESPSEIMESLTKMYSIPKDKQMLLFTHIRLAHGFSNHRKRLQAVQARLHAISILVYSNALQESANSILYNGLIEELVDVLQITDKQLMEIKAASLRTLTSIVHLERTPKLSSIIDCTGTASYHGFLPVLVRNCIQAMIDPSMDPYPHQFATALFSFLYHLASYDAGGEALVSCGMMEALLKVIKFLGDEQDQITFVTRAVRVVDLITNLDMAAFQSHSGLSIFIYRLEHEVDLCRKECPFVIKPKIQRPNTTQEGEEMETDMDGVQCIPQRAALLKSMLNFLKKAIQDPAFSDGIRHVMDGSLPTSLKHIISNAEYYGPSLFLLATEVVTVFVFQEPSLLSSLQDNGLTDVMLHALLIKDVPATREVLGSLPNVFSALCLNARGLQSFVQCQPFERLFKVLLSPDYLPAMRRRRSSDPLGDTASNLGSAVDELMRHQPTLKTDATTAIIKLLEEICNLGRDPKYICQKPSIQKADGTATAPPPRSNHAAEEASSEDEEEEEVQAMQSFNSTQQNETEPNQQVVGTEERIPIPLMDYILNVMKFVESILSNNTTDDHCQEFVNQKGLLPLVTILGLPNLPIDFPTSAACQAVAGVCKSILTLSHEPKVLQEGLLQLDSILSSLEPLHRPIESPGGSVLLRELACAGNVADATLSAQATPLLHALTAAHAYIMMFVHTCRVGQSEIRSISVNQWGSQLGLSVLSKLSQLYCSLVWESTVLLSLCTPNSLPSGCEFGQADMQKLVPKDEKAGTTQGGKRSDGEQDGAAGSMDASTQGLLEGIGLDGDTLAPMETDEPTASDSKGKSKITPAMAARIKQIKPLLSASSRLGRALAELFGLLVKLCVGSPVRQRRSHHAASTTTAPTPAARSTASALTKLLTKGLSWQPPPYTPTPRFRLTFFICSVGFTSPMLFDERKYPYHLMLQKFLCSGGHNALFETFNWALSMGGKVPVSEGLEHSDLPDGTGEFLDAWLMLVEKMVNPTTVLESPHSLPAKLPGGVQNFPQFSALRFLVVTQKAAFTCIKNLWNRKPLKVYGGRMAESMLAILCHILRGEPVIRERLSKEKEGSRGEEDTGQEEGGSRREPQVNQQQLQQLMDMGFTREHAMEALLNTSTMEQATEYLLTHPPPIMGGVVRDLSMSEEDQMMRAIAMSLGQDIPMDQRAESPEEVACRKEEEERKAREKQEEEEAKCLEKFQDADPLEQDELHTFTDTMLPGCFHLLDELPDTVYRVCDLIMTAIKRNGADYRDMILKQVVNQVWEAADVLIKAALPLTTSDTKTVSEWISQMATLPQASNLATRILLLTLLFEELKLPCAWVVESSGILNVLIKLLEVVQPCLQAAKEQKEVQTPKWITPVLLLIDFYEKTAISSKRRAQMTKYLQSNSNNWRWFDDRSGRWCSYSASNNSTIDSAWKSGETSVRFTAGRRRYTVQFTTMVQVNEETGNRRPVMLTLLRVPRLNKNSKNSNGQELEKTLEESKEMDIKRKENKGNDTPLALESTNTEKETSLEETKIGEILIQGLTEDMVTVLIRACVSMLGVPVDPDTLHATLRLCLRLTRDHKYAMMFAELKSTRMILNLTQSSGFNGFTPLVTLLLRHIIEDPCTLRHTMEKVVRSAATSGAGSTTSGVVSGSLGSREINYILRVLGPAACRNPDIFTEVANCCIRIALPAPRGSGTASDDEFENLRIKGPNAVQLVKTTPLKPSPLPVIPDTIKEVIYDMLNALAAYHAPEEADKSDPKPGVMTQEVGQLLQDMGDDVYQQYRSLTRQSSDFDTQSGFSINSQVFAADGASTETSASGTSQGEASTPEESRDGKKDKEGDRASEEGKQKGKGSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPHTQNAEDKDTPALARLFLASLAAAGSGTDAQVALVNEVKAALGRALAMAESTEKHARLQAVMCIISTIMESCPSTSSFYSSATAKTQHNGMNNIIRLFLKKGLVNDLARVPHSLDLSSPNMANTVNAALKPLETLSRIVNQPSSLFGSKSASSKNKSEQDAQGASQDSSSNQQDPGEPGEAEVQEEDHDVTQTEVADGDIMDGEAETDSVVIAGQPEVLSSQEMQVENELEDLIDELLERDGGSGNSTIIVSRSGEDESQEDVLMDEAPSNLSQASTLQANREDSMNILDPEDEEEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGSEMELDEDYPDMNASPLVRFERFDREDDLIIEFDNMFSSATDIPPSPGNIPTTHPLMVRHADHSSLTLGSGSSTTRLTQGIGRSQRTLRQLTANTGHTIHVHYPGNRQPNPPLILQRLLGPSAAADILQLSSSLPLQSRGRARLLVGNDDVHIIARSDDELLDDFFHDQSTATSQAGTLSSIPTALTRWTEECKVLDAESMHDCVSVVKVSIVNHLEFLRDEELEERREKRRKQLAEEETKITDKGKEDKENRDQSAQCTASKSNDSTEQNLSDGTPMPDSYPTTPSSTDAATSESKETLGTLQSSQQQPTLPTPPALGEVPQELQSPAGEGGSSTQLLMPVEPEELGPTRPSGEAETTQMELSPAPTITSLSPERAEDSDALTAVSSQLEGSPMDTSSLASCTLEEAVGDTSAAGSSEQPRAGSSTPGDAPPAVAEVQGRSDGSGESAQPPEDSSPPASSESSSTRDSAVAISGADSRGILEEPLPSTSSEEEDPLAGISLPEGVDPSFLAALPDDIRREVLQNQLGIRPPTRTAPSTNSSAPAVVGNPGVTEVSPEFLAALPPAIQEEVLAQQRAEQQRRELAQNASSDTPMDPVTFIQTLPSDLRRSVLEDMEDSVLAVMPPDIAAEAQALRREQEARQRQLMHERLFGHSSTSALSAILRSPAFTSRLSGNRGVQYTRLAVQRGGTFQMGGSSSHNRPSGSNVDTLLRLRGRLLLDHEALSCLLVLLFVDEPKLNTSRLHRVLRNLCYHAQTRHWVIRSLLSILQRSSESELCIETPKLTTSEEKGKKSSKSCGSSSHENRPLDLLHKMESKSSNQLSWLSVSMDAALGCRTNIFQIQRSGGRKHTEKHASGGSTVHIHPQAAPVVCRHVLDTLIQLAKVFPSHFTQQRTKETNCESDRERGNKACSPCSSQSSSSGICTDFWDLLVKLDNMNVSRKGKNSVKSVPVSAGGEGETSPYSLEASPLGQLMNMLSHPVIRRSSLLTEKLLRLLSLISIALPENKVSEAQANSGSGASSTTTATSTTSTTTTTAASTTPTPPTAPTPVTSAPALVAATAISTIVVAASTTVTTPTTATTTVSISPTTKGSKSPAKVSDGGSSSTDFKMVSSGLTENQLQLSVEVLTSHSCSEEGLEDAANVLLQLSRGDSGTRDTVLKLLLNGARHLGYTLCKQIGTLLAELREYNLEQQRRAQCETLSPDGLPEEQPQTTKLKGKMQSRFDMAENVVIVASQKRPLGGRELQLPSMSMLTSKTSTQKFFLRVLQVIIQLRDDTRRANKKAKQTGRLGSSGLGSASSIQAAVRQLEAEADAIIQMVREGQRARRQQQAATSESSQSEASVRREESPMDVDQPSPSAQDTQSIASDGTPQGEKEKEERPPELPLLSEQLSLDELWDMLGECLKELEESHDQHAVLVLQPAVEAFFLVHATERESKPPVRDTRESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSREPSSMHISSSLPPDTQKFLRFAETHRTVLNQILRQSTTHLADGPFAVLVDYIRVLDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA", "sequence_length": 4374, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "746b5a381bbaded30e5fe4ffc0898c70edad0766057c975d3845f9656cff3e60", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Z6Z7.json", "taxon_id": "9606", "uniprot_accession": "Q7Z6Z7", "uniprot_release": "2026_03" } ], "pfam_id": "PF06025", "short_name": "DUF913", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/slc35f-pf06027.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/slc35f-pf06027.yaml" } ], "pfam_ids": [ "PF06027" ], "protein_name": "Solute carrier family 35 member F1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIPPEQPQQQLQPPSPAPPNHVVTTIENLPAEGSGGGGSLSASSRAGVRQRIRKVLNREMLISVALGQVLSLLICGIGLTSKYLSEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEENLLAILRRRWWKYMILGLIDLEANYLVVKAYQYTTLTSIQLLDCFVIPVVILLSWFFLLIRYKAVHFIGIVVCILGMGCMVGADVLVGRHQGAGENKLVGDLLVLGGATLYGISNVWEEYIIRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGFSACMFGLYSFMPVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGLVLYSSTSTYIAQDPRVYKQFRNPSGPVVDLPTTAQVEPSVTYTSLGQETEEEPHVRVA", "sequence_length": 408, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "543fa9a5c424c71acdd716abe4c9a40b6b2f10b00d294419c356ae1cffc5e361", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T1Q4.json", "taxon_id": "9606", "uniprot_accession": "Q5T1Q4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/trna-queuosine-34-biosynthetic-process-from-salvaged-queuine-go0160255.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160255", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/trna-queuosine-34-biosynthetic-process-from-salvaged-queuine-go0160255.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/trna-queuosine-34-biosynthetic-process-from-salvaged-queuosine-or-its-precursors-go0160254.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/trna-queuosine-34-biosynthetic-process-from-salvaged-queuosine-or-its-precursors-go0160254.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/slc35f-pf06027.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/slc35f-pf06027.yaml" } ], "pfam_ids": [ "PF06027" ], "protein_name": "Queuine/queuosine transporter SLC35F2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAESPASAGASEPRALGTVDSIGSQLSRIRRKLFTWDILKTIALGQMLSLCICGTAITSQYLAEKYRVNTPMLQSFINYCLLFLVYTLMLAFQSGSDNLLEILRRKWWKYTLLGLADVEANYLIVRAYQYTTLTSVQLLDCFGIPVLMALSWFILRARYKVIHFIAVFVCLLGVGTMVGADILAGREDNSGSDVLIGDILVLLGASLYAVSNVCEEYIVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIARIQWDWKIALLFVAFALCMFCLYSFMPLVIKVTSATSVNLGILTADLYSLFFGLFLFEYKFSGLYILSFTVIMVGFILYCSTPTRTVEPPESSVPPVTSIGIDNLGLKLEESGLPETHSAVL", "sequence_length": 375, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "61fd28a4d0d2556a4661e62fcf4ae3d089209faa6305ceaa9260bda6a908020b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q7TML3.json", "taxon_id": "10090", "uniprot_accession": "Q7TML3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/slc35f-pf06027.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/slc35f-pf06027.yaml" } ], "pfam_ids": [ "PF06027" ], "protein_name": "Solute carrier family 35 member F1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIPPEPPQPQLQPPPPPAPPNHVVTTIENLPAEGSGGVSLSASSRASMRQRIRKVLNREMLISVALGQVLSLLVCGIGLTSKYLAEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEENLLAILRRRWWKYMILGLIDLEANYLVVKAYQYTTLTSVQLLDCFVIPVVILLSWFFLLIRYKAVHFIGIVVCILGMGCMVGADVLVGRHQGAGENKLVGDLLVLGGATLYGISNVWEESIIRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGFSACMFGLYSFMPVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGLVLYSSTSTYIAQDPRVYKQFRNPSGPVVDLPSTAQVEPSVTYTSLGQETEEEPHVRVA", "sequence_length": 408, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "024a22da36cedb15452f69fbfd23aa071a187a8785b11d78c2749e7c8df12e2a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BGK5.json", "taxon_id": "10090", "uniprot_accession": "Q8BGK5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/trna-queuosine-34-biosynthetic-process-from-salvaged-queuine-go0160255.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160255", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/trna-queuosine-34-biosynthetic-process-from-salvaged-queuine-go0160255.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/trna-queuosine-34-biosynthetic-process-from-salvaged-queuosine-or-its-precursors-go0160254.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/trna-queuosine-34-biosynthetic-process-from-salvaged-queuosine-or-its-precursors-go0160254.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/slc35f-pf06027.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/slc35f-pf06027.yaml" } ], "pfam_ids": [ "PF06027" ], "protein_name": "Queuine/queuosine transporter SLC35F2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEADSPAGPGAPEPLAEGAAAEFSSLLRRIKGKLFTWNILKTIALGQMLSLCICGTAITSQYLAERYKVNTPMLQSFINYCLLFLIYTVMLAFRSGSDNLLVILKRKWWKYILLGLADVEANYVIVRAYQYTTLTSVQLLDCFGIPVLMALSWFILHARYRVIHFIAVAVCLLGVGTMVGADILAGREDNSGSDVLIGDILVLLGASLYAISNVCEEYIVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIASIHWDWKIALLFVAFALCMFCLYSFMPLVIKVTSATSVNLGILTADLYSLFVGLFLFGYKFSGLYILSFTVIMVGFILYCSTPTRTAEPAESSVPPVTSIGIDNLGLKLEENLQETHSAVL", "sequence_length": 374, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e247f679ac9f4d0cb61e62a711689d5b26b1c30a5b79802b8c32556297061527", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IXU6.json", "taxon_id": "9606", "uniprot_accession": "Q8IXU6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/slc35f-pf06027.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/slc35f-pf06027.yaml" } ], "pfam_ids": [ "PF06027" ], "protein_name": "Solute carrier family 35 member F6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAWTKYQLFLAGLMLVTGSINTLSAKWADNFMAEGCGGSKEHSFQHPFLQAVGMFLGEFSCLAAFYLLRCRAAGQSDSSVDPQQPFNPLLFLPPALCDMTGTSLMYVALNMTSASSFQMLRGAVIIFTGLFSVAFLGRRLVLSQWLGILATIAGLVVVGLADLLSKHDSQHKLSEVITGDLLIIMAQIIVAIQMVLEEKFVYKHNVHPLRAVGTEGLFGFVILSLLLVPMYYIPAGSFSGNPRGTLEDALDAFCQVGQQPLIAVALLGNISSIAFFNFAGISVTKELSATTRMVLDSLRTVVIWALSLALGWEAFHALQILGFLILLIGTALYNGLHRPLLGRLSRGRPLAEESEQERLLGGTRTPINDAS", "sequence_length": 371, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "50e523753e42510f42b5fcc2cace00d2790c2384cacc52fada6bd87505b7ace2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N357.json", "taxon_id": "9606", "uniprot_accession": "Q8N357", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/slc35f-pf06027.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/slc35f-pf06027.yaml" } ], "pfam_ids": [ "PF06027" ], "protein_name": "Solute carrier family 35 member F6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAWTKYQLFLAGLMLVTGSINTLSAKWADNFVAEGCGGSQEHSFKHPFVQAVGMFLGEFSCLAAFYLLKCQGRRQSASSVEPQQPFNTLLFLPPALCDMTGTSIMYVALNMTSASSFQMLRGAVIIFTGLFSVAFLDRRLAPSQWLGILITIAGLVVVGLADLLSKHDSQHKLSEVITGDLLIIMAQIIIAIQMVLEEKFVYKHNIHPLQAVGIEGFFGFVILSLLLVPMFYIPTASFSGNPRGVLEDALDAFCQVGRQPLIALALLGNISSIAFFNFSGISVTKELSATTRMVLDTLRTIVIWAFTLALGWEIFYPLQILGFLILLMGTALYNGLHRPLLAFLSRRWRLPTQEGEQERLLGDSRTPINEAS", "sequence_length": 372, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "629be73fdc7004c2a118ee5256faeb5083c62a03a1fc10ecf9975f05d25a6ba0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VE96.json", "taxon_id": "10090", "uniprot_accession": "Q8VE96", "uniprot_release": "2026_03" } ], "pfam_id": "PF06027", "short_name": "SLC35F", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06028", "short_name": "DUF915", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06030", "short_name": "WxLIP_PGBD", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06032", "short_name": "S-Me-THD_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf918-pf06033.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06033", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf918-pf06033.yaml" } ], "pfam_ids": [ "PF06033" ], "protein_name": "Uncharacterized 18.9 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMIQSVHAKRLEFDNVILDLSHLQLHGPPEERYIVFLNVKRAFYKNFCVECDMSLETFALHLYETARLTVDGAVVPRAPEFAHHISFNSADRDQSLVLDLGPDARIVVAKQLRADERYHQRASGFLDFQRRHERPPAPIEHDLVARNALDRELEIKLYTLCES", "sequence_length": 163, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "43d42baf9f6c69605b306ec23395f3886681365f0b846bfa9136364561339c10", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10315.json", "taxon_id": "262177", "uniprot_accession": "O10315", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf918-pf06033.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06033", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf918-pf06033.yaml" } ], "pfam_ids": [ "PF06033" ], "protein_name": "Uncharacterized 19.0 kDa protein in LEF8-FP intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKHPVYARYLEFDDVVLDLTSLIFLEFDNAQNEEYIIFMNVKKAFYKNFHITCDLSLETLTVLVYEKARLIVKQMEFEQPPNFVNFISFNATDNDNSMIIDLCSDARIIVAKKLTPDETYHQRVSGFLDFQKRNCIPRPPIESDPKVRDALDRELEIKLYK", "sequence_length": 161, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f88a4e7bb3e3ccde687542c6cc9a6452fdccfc4b5c48f435520ca465a1ce5868", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41461.json", "taxon_id": "46015", "uniprot_accession": "P41461", "uniprot_release": "2026_03" } ], "pfam_id": "PF06033", "short_name": "DUF918", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf919-pf06034.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06034", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf919-pf06034.yaml" } ], "pfam_ids": [ "PF06034" ], "protein_name": "Uncharacterized 8.5 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSSKGGDAKVVGDGAKSLANQLDQINKIKRKATIESQHFEKIYKLTKNPNELQDLHKRVMDSRVQFLNFGVQNF", "sequence_length": 75, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f2f5fe02c6d265f56c66eb9bf97559138230afa5cfe54dff41eddd90d1d95c3f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10294.json", "taxon_id": "262177", "uniprot_accession": "O10294", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf919-pf06034.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06034", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf919-pf06034.yaml" } ], "pfam_ids": [ "PF06034" ], "protein_name": "Uncharacterized 8.6 kDa protein in IAP1-SOD intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFSRNYNASQSQRDLKSQLEEINRQKQKITIDSQHFEKIKSVTKNVNELQNMEKRVMKSRQNFLNYGIDNF", "sequence_length": 71, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7350c29fd5751fae1c7140acd3ead955a1e2c14ed39064f17786962aa46f91dd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41433.json", "taxon_id": "46015", "uniprot_accession": "P41433", "uniprot_release": "2026_03" } ], "pfam_id": "PF06034", "short_name": "DUF919", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06035", "short_name": "Peptidase_C93", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06037", "short_name": "DUF922", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06041", "short_name": "DUF924", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06042", "short_name": "NTP_transf_6", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nf-kappa-b-activating-protein-c-terminal-ipr009269.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009269", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nf-kappa-b-activating-protein-c-terminal-ipr009269.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nkap-c-pf06047.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06047", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nkap-c-pf06047.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nkap-pf15692.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15692", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nkap-pf15692.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5M9Q1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06047", "PF15692" ], "protein_name": "NKAP-like protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8780a6aeca45f049b55ad1e529eb80cfc05a8e393eebc774229311890e35982c", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPPVSRSSYSEDIVGSRRRRRSSSGSPPSPQSRCSSWDGCSRSHSRGREGLRPPWSELDVGALYPFSRSGSRGRLPRFRNYAFASSWSTSYSGYRYHRHCYAEERQSAEDYEKEESHRQRRLKERERIGELGAPEVWGPSPKFPQLDSDEHTPVEDEEEVTHQKSSSSDSNSEEHRKKKTSRSRNKKKRKNKSSKRKHRKYSDSDSNSESDTNSDSDDDKKRVKAKKKKKKKKHKTKKKKNKKTKKESSDSSCKDSEEDLSEATWMEQPNVADTMDLIGPEAPIIHTSQDEKPLKYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIGSFECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRESKILASFREMVHKKTKEKDDK", "sequence_length": 402, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8780a6aeca45f049b55ad1e529eb80cfc05a8e393eebc774229311890e35982c", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q5M9Q1.json", "taxon_id": "9606", "uniprot_accession": "Q5M9Q1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nf-kappa-b-activating-protein-c-terminal-ipr009269.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009269", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nf-kappa-b-activating-protein-c-terminal-ipr009269.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nkap-c-pf06047.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06047", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nkap-c-pf06047.yaml" } ], "pfam_ids": [ "PF06047" ], "protein_name": "NKAP-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSPVSRSRPNEDTLGSQKRRRFSESPPSALQTSRSPRGGGFGSLLSGPEGLQPPRGAQGVRPLHPISRPRSGERPLPLGIRTLACSSSPICGGYRYHHNYAGDPSWAEDQEKEKEESYRQRRLKERERIGELGAPEVWGLSPKIPEPDSDEHTPAEDEVKNQKSSSSDFTNEEKRTKTSHSTKKKRKKKPSKRKHKKYYDSSSDCHSSSDSDKKKVKTKKKEKKKKHRAKQLKKKRTKKEYNDISCKASERDLPEDAWMEQSMSAESMDLIGPEAPVIHTSQDEKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIASFECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMVYRKTKGKDDK", "sequence_length": 395, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2a23372252f4d36d9b43a8a9970f8230bb1a5a2df8e533c4f5ec229eee87e3d0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5SZT7.json", "taxon_id": "10090", "uniprot_accession": "Q5SZT7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nf-kappa-b-activating-protein-c-terminal-ipr009269.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009269", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nf-kappa-b-activating-protein-c-terminal-ipr009269.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nkap-c-pf06047.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06047", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nkap-c-pf06047.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nkap-pf15692.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15692", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nkap-pf15692.yaml" } ], "pfam_ids": [ "PF06047", "PF15692" ], "protein_name": "NF-kappa-B-activating protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPVSGSRSPDREASGSGGRRRSSSKSPKPSKSARSPRGRRSRSHSCSRSGDRNGLTHQLGGLSQGSRNQSYRSRSRSRSRERPSAPRGIPFASASSSVYYGSYSRPYGSDKPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKKSTTSASTSEEEKKKKSSRSKERSKKRRKKKSSKRKHKKYSEDSDSDSDSETDSSDEDNKRRAKKAKKKEKKKKHRSKKYKKKRSKKSRKESSDSSSKESQEEFLENPWKDRTKAEEPSDLIGPEAPKTLTSQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIASFECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMVYRKTKGKDDK", "sequence_length": 415, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cfebd875c0abb98c63585754d44c6503f385b471417fab90d927f46b2787842f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N5F7.json", "taxon_id": "9606", "uniprot_accession": "Q8N5F7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nf-kappa-b-activating-protein-c-terminal-ipr009269.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009269", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nf-kappa-b-activating-protein-c-terminal-ipr009269.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nkap-c-pf06047.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06047", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nkap-c-pf06047.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nkap-pf15692.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15692", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nkap-pf15692.yaml" } ], "pfam_ids": [ "PF06047", "PF15692" ], "protein_name": "NF-kappa-B-activating protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPVSGSRSPEREASGAKRRSPSRSPKSIKSSRSPRCRRSRSRSCSRFGDRNGLSHSLSGFSQSSRNQSYRSRSRSRSRERPSAQRSAPFASASSSAYYGGYSRPYGGDKPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKKSTTSASSSEDDKKKKRKSSHSKDRAKKKRKKKSSKRKHKKYSEDSDSDSESDTDSSDEDSKRRAKKAKKKDKKKKRRGKKYKKKKSKKNRKESSDSSSKESQEEFLENPWKDRSKAEEPSDLIGPEAPKTLASQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIASFECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMVYRKTKGKDDK", "sequence_length": 415, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4bea203dad1ddc189070670db0f8fcf1d30ac885fb520e8a5bfa2d43a61e748a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D0F4.json", "taxon_id": "10090", "uniprot_accession": "Q9D0F4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nf-kappa-b-activating-protein-c-terminal-ipr009269.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009269", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nf-kappa-b-activating-protein-c-terminal-ipr009269.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nkap-c-pf06047.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06047", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nkap-c-pf06047.yaml" } ], "pfam_ids": [ "PF06047" ], "protein_name": "NF-kappa-B-activating protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSRSRSRSRQRERRRSDSRARSRSERRTYQKPQHRRSVSRERKRERDRELHRERTSNRSSRRSREKDAVPRRRRTRSSPSRSSSSSSSDRSSSSRSPSRSRKSRPKSVERWPNDRYHENNDRRQNPFRGRAPEGSFINDPAEPSFRSQHRGRGSSNHQFKGDSKAVNARRNQRVLIGEEGVPEVWGKSPSRPETDDVELVKGSYIGPKKKKKKGKRKHKKSEKKSKKKSKKSKKKKSKQESSSSSSSSSSEDSSDESSSSSSSSSSDSEDESEEEDVWLEKTADGIKKPKKKKSSTSKKDKKSKKKKKKRKSEAEKSKKSSSSSASKSKNKESASHNDEDVGPSLRPGGSLNQKDFGKALLPGEGAAMAAYIAEGKRIPRRGEIGLTSDEIANFESVGYVMSGSRHRRMEAVRIRKENQLYSADEKRALAMFSKEERQKRENKILSQFKDMIHSKLQAKDKK", "sequence_length": 463, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6fd54fcae1133b2886ffeb42596025658456e3e50ac9dd004c79579d607d77f6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VB74.json", "taxon_id": "7227", "uniprot_accession": "Q9VB74", "uniprot_release": "2026_03" } ], "pfam_id": "PF06047", "short_name": "Nkap_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06048", "short_name": "DUF927", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06051", "short_name": "DUF928", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06053", "short_name": "DUF929", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06059", "short_name": "DUF930", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf932-pf06067.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06067", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf932-pf06067.yaml" } ], "pfam_ids": [ "PF06067" ], "protein_name": "UPF0380 protein YubP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRLASRFGRYNSIHRERPLTDDELMQFVPSVFSGDKHESRSERYTYIPTINIINKLRDEGFQPFFACQSRVRDLGRREYSKHMLRLRREGHINGQEVPEIILLNSHDGSSSYQMIPGIFRFVCTNGLVCGNNFGEIRVPHKGDIVGQVIEGAYEVLGVFDKVTDNMEAMKEIHLNSDEQHLFGRAALMVRYEDENKTPVTPEQIITPRRWEDKQNDLWTTWQRVQENMIKGGLSGRSASGKNTRTRAITGIDGDIRINKALWVIAEQFRKWKS", "sequence_length": 273, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ad54d5527d504e2d32fa03097590c9b3a85cca6440f988645afa64c3ec6eee25", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P18005.json", "taxon_id": "83333", "uniprot_accession": "P18005", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf932-pf06067.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06067", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf932-pf06067.yaml" } ], "pfam_ids": [ "PF06067" ], "protein_name": "UPF0380 protein YfjQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTRLASRFGAANLIRRDRPLTREELFRVVPSVFSEDKHESRSERYTYIPTISLLDSLQREGFQPFFACQTRVRDPRRREHTKHMLRLRREGQITGKQVPEIILLNSHDGTSSYQMLPGMFRAVCQNGLVCGESFGEVRVPHKGDVVSQVIEGAYEVLGIFERVEEKRDAMQSLLLPPPVQQALAKAALTYRFGEDHQPVTESQILSPRRWQDESNDLWTTYQRIQENLIKGGLSGRNAKGGRTHTRAVRGIDGDVKLNRALWVMAETLLTQLQ", "sequence_length": 273, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "515976c5f7cab4c1c6bd178e001492e780a447fa1a98b97ffec8a8aeee454791", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P52132.json", "taxon_id": "83333", "uniprot_accession": "P52132", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf932-pf06067.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06067", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf932-pf06067.yaml" } ], "pfam_ids": [ "PF06067" ], "protein_name": "UPF0380 protein YafZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTRLASRFGAANLIRRDRPLTREELFRVVPSVFSEDKHESRSERYTYIPTISLLDSLQREGFQPFFACQTRVRDPGRREHTKHMLRLRREGQITGKQVPEIILLNSHDGTSSYQMLPGLFRAVCQNGLVCGESFGEVRVPHKGDVVSQVIEGAYEVLGIFDRVEEKRDAMQSLLLPPPAQQALAKAALTYRFGEDHQPVTESQILSPRRWQDESNDLWTTYQRIQENLIKGGLSGRNAKGGRSHTRAVRGIDGDVKLNRALWVMAEALLTQLQ", "sequence_length": 273, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3a90bc38ef87d67638eb2a9f43b39fb3c87d0884c954c864559dab42b22674ad", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P77206.json", "taxon_id": "83333", "uniprot_accession": "P77206", "uniprot_release": "2026_03" } ], "pfam_id": "PF06067", "short_name": "DUF932", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ychf-gtpase-c-pf06071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ychf-gtpase-c-pf06071.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0ABU2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01926", "PF06071" ], "protein_name": "Ribosome-binding ATPase YchF", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8bd58092dacbb5e08d6e40ac03bd3ddbf6cc4dcd6430d13f8fff2e181235e029", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKAELAVLEKCLPQLENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAVEADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFLFNV", "sequence_length": 363, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8bd58092dacbb5e08d6e40ac03bd3ddbf6cc4dcd6430d13f8fff2e181235e029", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P0ABU2.json", "taxon_id": "83333", "uniprot_accession": "P0ABU2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ychf-gtpase-c-pf06071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ychf-gtpase-c-pf06071.yaml" } ], "pfam_ids": [ "PF01926", "PF06071" ], "protein_name": "Ribosome-binding ATPase YchF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALTAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIVEVPDDRLQKLTELVNPKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKVDPIDDIETINLELILADMETVEKRITRVSKLAKQKDKDAVFEFEILSKLKEAFESEKPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENAEVIVVCAKIESEIAELEGEEKQMFLEELGIQESGLDQLIKASYSLLGLATYFTAGEQEVRAWTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKVRLEGKEYVVQDGDVIHFRFNV", "sequence_length": 366, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "08197968361b388af3b0214d69cfa2fd1f23c4fd21e70f12f2a6219185cd7ba9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37518.json", "taxon_id": "224308", "uniprot_accession": "P37518", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ychf-gtpase-c-pf06071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ychf-gtpase-c-pf06071.yaml" } ], "pfam_ids": [ "PF01926", "PF06071" ], "protein_name": "Obg-like ATPase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPKKQVEEKKVLLGRPGNNLKAGIVGLANVGKSTFFQAITRCPLGNPANYPFATIDPEEARVIVPSPRFDKLCEIYKKTASEVPAHLTVYDIAGLTKGASAGEGLGNAFLSHIRSVDSIYQVVRCFDDAEIIHVEGDVDPVRDLEIINQELRLKDIEFAQKALEGAEKIAKRGGQSLEVKQKKEEMDLITKIIKLLESGQRVANHSWTSKEVEIINSMFLLTAKPCIYLINLSERDYIRKKNKHLLRIKEWVDKYSPGDLIIPFSVSLEERLSHMSPEDAEEELKKLQTISALPKIITTMRQKLDLISFFTCGPDEVREWTIRRGTKAPQAAGVIHNDLMNTFILAQVMKCEDVFEYKDDSAIKAAGKLMQKGKDYVVEDGDIIYFRAGAGKN", "sequence_length": 394, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4e599153dec58fde3c58bfc7012edef2cb5d78cc1380c0e3fed350ef477d3417", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38219.json", "taxon_id": "559292", "uniprot_accession": "P38219", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ychf-gtpase-c-pf06071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ychf-gtpase-c-pf06071.yaml" } ], "pfam_ids": [ "PF01926", "PF06071" ], "protein_name": "Obg-like ATPase homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIGGGKFLLGRISNNPTSGIVGLANVGKSTFFQAITNSKLGNPANYPFATIDAECAKVNIPSVPLSNLLRIYQSAKCVPGTLTIYDIAGLTRGASQGHGLGNKFLNDIRHVEGIFQVVRGFLKEDITHIEGNVDPVRDLSVVQDELILKDLEFLENIRERLSKKMRMVSKNSKEHQEMKIETELLDALEEHLFNGKKIRHFKDHWNLDEVKILNKHNFLTSKPTLILLNVSPQDYVRNENKFVRNIIEWINEFSPGDKFLLFSAEFESQLMECKGIASEYFDKIKEDTNVSDQQLVSAIPQIILEMRKLLNLISFFTCGPQEVHQWNIREGTTAQEAAGVIHSDLRETFISADVIKYDDLKKMEPPLNESLLKSKGLIKRAGKQYIMQDNDIALFKAAGGKIKK", "sequence_length": 405, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "31e895e8ba9ceceb7db974157321663210b02592005c231020d553a628aa554b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38746.json", "taxon_id": "559292", "uniprot_accession": "P38746", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ychf-gtpase-c-pf06071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ychf-gtpase-c-pf06071.yaml" } ], "pfam_ids": [ "PF01926", "PF06071" ], "protein_name": "Obg-like ATPase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPKKNVVEEKPALIGRLGTNLKVGILGLPNVGKSTFFNVLTKSEAQAENFPFCTIDPNESRVAVQDDRFDWLVNHYKPASKVPAFLNVTDIAGLVKGASEGQGLGNAFLSHVSACDALFHLCRAFDDDDVTHVEGEVDPVRDLEIISNELFAKDLQFIDGPLDKVEKLFTRANDKTKKIEYDTLVRVKKCLEEKKPVRQELWNEKEIEILNKHLFLTAKPIVYLVNLSEKDYIRKKNKWLPKIKAWIDTNDAGAVLIPFSGAFELKLLDMPEDERQKYLKEQGVTSNLDKIVHTGYKALQLEYFFTSGEDEVKAWTIQVGTPAPKAAGRIHTDFEKGFIMAEVMKVADLIELGDEAKCKAGGKYRQQGKTYIVQDGDVIFFKFNAGAGLQAKKK", "sequence_length": 395, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b5660fd9c6224157f547c152c6120e208d32f6e8131fd1e230656046bd12e79a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P91917.json", "taxon_id": "6239", "uniprot_accession": "P91917", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ychf-gtpase-c-pf06071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ychf-gtpase-c-pf06071.yaml" } ], "pfam_ids": [ "PF01926", "PF06071" ], "protein_name": "Obg-like ATPase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPKKGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPILDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKDEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQQPKKK", "sequence_length": 396, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "158f4863f7bc3ff3bbf662758d0d17f2422d482d7a2fcb50d5b03a1b565ab424", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CZ30.json", "taxon_id": "10090", "uniprot_accession": "Q9CZ30", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ychf-gtpase-c-pf06071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ychf-gtpase-c-pf06071.yaml" } ], "pfam_ids": [ "PF01926", "PF06071" ], "protein_name": "Obg-like ATPase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPKKGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQQPKKK", "sequence_length": 396, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e50ebb57af5616d569720b9d8d88ea62587f68663eda5cdb1d0cc9b166448828", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NTK5.json", "taxon_id": "9606", "uniprot_accession": "Q9NTK5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ychf-gtpase-c-pf06071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ychf-gtpase-c-pf06071.yaml" } ], "pfam_ids": [ "PF01926", "PF06071" ], "protein_name": "Obg-like ATPase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPKAKAKDAGPVERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLSIPAENFPFCTIEPNEARVNIPDERFDWLCQTYKPKSEIPAFLEIHDIAGLVRGAHEGQGLGNNFLSHIRAVDGIFHVLRAFEDADIIHVDDIVDPVRDLETITEELRLKDIEFVGKKIDDVEKSMKRSNDKQLKIELELLQKVKAWLEDGKDVRFGDWKTADIEILNTFQLLSAKPVVYLINLNERDYQRKKNKFLPKIHAWVQEHGGDTMIPFSGVFERSLADMAPDEAAKYCEENKLQSALPRIIKTGFSAINLIYFFTAGPDEVKCWQIRRQSKAPQAAGAIHTDFERGFICAEVMKFEDLKELGNEPAVKAAGKYRQEGKTYVVQDGDIIFFKFNVSGGGKK", "sequence_length": 394, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d6452dd5b1d7573fab22aabd6d3ecfe7c035d30c617202a5ae6b0f51bae6de34", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SA73.json", "taxon_id": "3702", "uniprot_accession": "Q9SA73", "uniprot_release": "2026_03" } ], "pfam_id": "PF06071", "short_name": "YchF-GTPase_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06073", "short_name": "DUF934", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06074", "short_name": "Portal_Mu", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml" } ], "pfam_ids": [ "PF06075", "PF21647" ], "protein_name": "Protein CORTICAL MICROTUBULE DISORDERING 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAELRSGVLFKLLEEMGVGKVRRDVDHRPVLLQIRCIIPVLAAGGLWPNKGFFLRITDSTHSIYVSLPREENDLVLYDKLQIGQLIFVEKLEFAYPVPMIKGIRPTPGRRACTGDPIDLIPKERIEKFCVGLSDIEENYDHQVKKPRRTRWNNSSVSELNFTDLGLSKNLSSVMEEKDDTESMISSCSSSFSSAARRRSWIGSADNRKRRDSLDPSMIKNHDHDTKHVSRARSSSATSPSLSIRSYGGIEEKSSSRTRRRDVVVSPSPRWSKSLSYGSRSNKSKNLLPPKSNTFESSDPISRKRSWTETEILWDSLPPKVVNLGKEILRQRDTAIRAASQALLEASAAERLLKCLRSYSELSDRRNQHQENQQPPIQDFLSFQDELSKSRLIIQSLSTEKTEHCNANIVKTGDERREKATQWIKSALATDLKLVSLSASKPTQSPGRKGLTLIAQESDNREGNASESNSRLGEIKERLSRASSELRNWLKEEGRSWYLNRVEKYLDEISNGTKWREMRSEEVGETMYQIKRVSDWLDTIVKGEEDEEEKMVMMMMSESETEACGRVRNKIYRILLKHVETTSLLSHQRSTSLMSHHQQQQHEQHLFQKTMSL", "sequence_length": 612, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7b8955d7a42f80b086f3156fa0b43f29f18ef8259c3a77d6c30458b347121db7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/F4JCB3.json", "taxon_id": "3702", "uniprot_accession": "F4JCB3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cord-c-pf21647.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21647", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cord-c-pf21647.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cord-n-pf06075.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06075", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cord-n-pf06075.yaml" } ], "pfam_ids": [ "PF06075", "PF21647" ], "protein_name": "Protein CORTICAL MICROTUBULE DISORDERING 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAALAPGILQKLIQGMKTGIKPTREHRSSMLQVTDIVPIDLDEKSLEPKQGFLIKISDSSHSIYVSLPSDQDDVVLSNKLQLGQFIYVDRLEPGSPVPVIKGAKPIPGRHPLLGTPETLVVPKERTDQEIGSKPRRGSWGQNVDFSSSPFVVKPMALEFDHSTPAKRSVSARFAASPIRRGGVRCSFGGGVLGKLEGESPATAMLRKSCFVSSASKFPRSRSVCDRQAKKNNASLFSPFKSSLEAQEDVVPLSTSKKIKPEKDTNLSGRLNILSKEATQLREVAQKVALQALREATITEIVVRHTKTFTNLSKSAKADCPAVCFEKFMEFHQQMAQTIGELTSIEVAATPDAENKSQNINARTENQKPTEEGSSSILHEIAYNSIDQEKRRSKRRIVLKQQSEGKTVRSNDENKNPASGGISNTIRLAKEIEDEAANWFMEFIEIALEKGMKKSRGPDDADVKKVPQSLILGVLNWIEVEQSDSNNNKRRRVHPKASKITRKLRIKLKNP", "sequence_length": 510, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "23a0408da6af0385d7bf69fbf6aad370d2901a8b38968a649d559bb558ba7f7e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O64602.json", "taxon_id": "3702", "uniprot_accession": "O64602", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml" } ], "pfam_ids": [ "PF06075", "PF21647" ], "protein_name": "Protein CORTICAL MICROTUBULE DISORDERING 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLTPRVLIKLLETMNTNIKVRGEYRSVLLQVISIVPALAGSELWPNQGFFIKVSDSSHSTYVSLSNEDNELILNNKLGIGQFFYVDKLDAGTPVPVLVGVRPISGRHPFVGNPKDLMQMLVPSETTPREEEYHNQKKKDGARSNIVENIRKHQPFVIKEEKTGVASRYMKGISNSKASGSDSSSGGSNNEGETGSIMVAKKVGVLAKGKQREHKDQARQAGPLQCRPATAPTKAEPKKLSLSSTVNYINRKSNSAEDASWSSLPVSLSKLGKGMLRRRNLAALIAAEVQREALAASHLIKCISMFAELSSNASPKNPHTSLRNFFTLQSILDQVQVTVVASKDKSFQPVNIHSLWMEPEKLSKKASLSSSRATMKPSKALTEAEKLEWVKGNGTEEIKELTNTLKRETRSWFLKFLEDALDTGLHATVPEKKGKTKGARLAEPDNHIAETLSQLKQANEWLEKVKNDNLSSDNSLLENIERLKKKIYSCLLLYVDSAASAIGV", "sequence_length": 505, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2ba20c356f10041635205a73998c641a886c330a296363a32114fe2c0729ef9d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NKR8.json", "taxon_id": "3702", "uniprot_accession": "Q6NKR8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cord-c-pf21647.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21647", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cord-c-pf21647.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cord-n-pf06075.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06075", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cord-n-pf06075.yaml" } ], "pfam_ids": [ "PF06075", "PF21647" ], "protein_name": "Protein CORTICAL MICROTUBULE DISORDERING 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANLVPGVLLKLLQHMNTDVKIAGEHRSSLLQVISIVPALAGGELFPNQGFYLKVSDSSHATYVSLPDEHDDLILSDKIQLGQYIHVDRVESSSPVPILRGVRPVPGRHPCVGDPEDIVATHSLGFLSDDKVKNDNNGGVSSKPKERVKASVKANGSGSDGERIIGNRLSVSISRDDSSDGKKPVSALFRAKSAKSSLSLDVKKESLGKLKTSSGSKSIPSSPTSCYSLPNSFAKFANGIKQQQTVKPKLLEKGSPRMGLSEKGRSLLKAESPKVGKKLPMIKNFVQGIEFGAKALRKSWEGNLDIRGSDRTKSSLPRRDLTPDSRSLAAPRRSTSSEKLPSKQERANVFARSSKEHNKIQSTKKVEPTAVLDTKDKTSRPKSTSVEKKSVAENGLPGNLVKVSVNGKRLAAANIQWSSLPPSLSRMGQEVLRHREAAQVVAIEALQEASASESLLQCLIMYSDLLSTAKEDDPLPVVEQFLKLHSGLKNVQVITESLSKLLSLMSSPDNEENRSEEAIKAASEKQKLAASWVQAALVTNLSPFSVYSSKQAKLAASRSKPVIILESPGNNSSSKTRGNIQNKPTIGSKLVAQGMIRKHRENSSSQKATSVAGSESPPLNWVKGNGLNEATDLAEKLQMVSQDWFLGFVERFLDADVITSSSLSLSDNGQIAGMLSQLKSVNDWLDEIGSKEDEEGLQEVSKETIDRLRKKIYEYLLTHVESAAAALGGGGGSVSSPRPKPIETKAKR", "sequence_length": 748, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79672aa45f24dc9b0055bb0e7f255180240bfd1d4a8071758f8b8bc7ab0ea213", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FRR2.json", "taxon_id": "3702", "uniprot_accession": "Q9FRR2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml" } ], "pfam_ids": [ "PF06075", "PF21647" ], "protein_name": "Protein CORTICAL MICROTUBULE DISORDERING 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLTPGVLSNLLNIAAGNSPSSPPLLSSHRSPLLQVIEIVPCLSDDQWRSEAFFVKVSDSLHAAYVAVSTGDDADLIRSDEIQLGQFIYICGGLHVEKGCPVPVIRGLKPVPKRRMCVGNPSDLYSSDLLLPFTQVSVSPTTTKKKNLVETRRLSLDSARRSCWDQTPPVTRRRDAALLLSSPRLKSKLVLNDKSLLKIESPSKYFNCGTSPALRNKNVVKPGSPISMASSPKDGIKSPISKHLNCETPALRSRYVVKPASPISVTRSPKDGIKSLSKAVTPPVALFKVPSSHMTWSDQRMSWSGLPKTIQLLGKEVSSHRQVAVSAAVSALEEASAMESVLFSLQAFAELCDSTKKLSTGQVVARFLDIYHNTQNTCKAVHRLLTQNRNNGSCRLVVNKNATSWVQAAVVTGFSQFNLFKEPGKKGDAADHHYIVMQNSSEKLNPKETTSSRTPSYKGAKPPATKHCSVSDRSSLEGKSSLKDSTSLADELVQVSSQWFLKYLENSLNKGSFLVKTEETNGKESLLVHLKALNHWLDDLNLNRTETNEKVEDLRKKLQRFLLEHIESVIGDTYNMKRKIINSI", "sequence_length": 585, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "853ddf2a2bbdf20cb97d8921c1e377b073855a6736c9671f82045c19dcbcca96", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SKA8.json", "taxon_id": "3702", "uniprot_accession": "Q9SKA8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml" } ], "pfam_ids": [ "PF06075", "PF21647" ], "protein_name": "Protein CORTICAL MICROTUBULE DISORDERING 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLAPGILLKLLQCMNSGTRPTGDHRSAILQVTGIVPALAGSDLWPNQGFYVQISDSLNSTYVSLSERDTDLILSNRLQLGQFIYLERLEFATPVPRAAGIRPVAGRHAFVGKPEPLIARVSNGSKRDFVIQPVSDSEYSLDPIAVYLNNRRIDDDGDSDVKPNVRQALAPVNQNEENRNQIRNQKPKTTPQRFSSPASSKRSVSSGKKNCSGAVAVTVERDPSPVVSGKGRRSASPVPSKCVVPSLAAAREENRKVAREPSIVVPSRYRQPSPNGRKMNPSPSGRRMSISPGRRLSSGLKMTPMVGDSSGKKKMAVIAAGISKVSEALVGSSAKNGNRKNWEEPLAGDGSAKNKPDHQAILRTQAAMTRRLSDANRRKSGSSSSVCEEKAKSCSSESSLLEEVSAFEGLGITYHERKWTDGSVPLDSISDELAKLGKEAMKRRDFAAKAAARALEEANANECIIRCLSKFSELSSASKVGNPLRIINEFLKIYEDVMKYSKIASENSFSLSSDQQNPISLWVEAALATNLEVVSLVKSHESPSSLKKSMPTRLSPRPSSKTDNIVGMWTDLDGLKETAKFAVNLQSEMQVWFIEFVEESLDNKNAAKRSLDGSSIAAVLSQLKQVNEWLDRVSSNQENKITTMDKIERLKRKIYGFVIHHVGSTYDNSASS", "sequence_length": 673, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b32794472d88c50a08461cf2e3c73f3bff3dec94a456ac4c83cd6b67b3e576ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9T0K8.json", "taxon_id": "3702", "uniprot_accession": "Q9T0K8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cord-c-pf21647.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21647", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cord-c-pf21647.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cord-n-pf06075.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06075", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cord-n-pf06075.yaml" } ], "pfam_ids": [ "PF06075", "PF21647" ], "protein_name": "Protein CORTICAL MICROTUBULE DISORDERING 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAALAPGILQKLIDGMKTGVKPTGEHRSSLLQVTDIVPIDLDEKNLLPKQGFFIKVSDSSHSIYVSLPSDQDDDVLSNKMQLGQFIYVDRLDPGTPVPIIKGARPIPGRHPLLGTPEPLMSTRGKIESSRPRRGSWGQNGDVSSPFVLKPAPLDFDQCTPAKHRLGTGRFMAASPNVMTRGRSPGGVRCSYGGGLLSKMAESPAAMMRKSCVVPPSSKFPRSKSVCDRETMAKNSVLFSPFKSSAKKNDSPPPSVRTRRATAASLLEDEREAPKSTSKYSKLEKPEKSLSLPGRLSTLSKEAMQQRETAQKIALQALREATTTETVVRHLKTFANLSKSAKADCPAACFDKFLEFHSQISETMNEIASIEAAASPATTEKKSEDGSLILHEIQHNSIDQEKTTSKRRILLKQQQKRSNDENKNPAVSLSGLGNTARLVKEIEKEAANWFMEFIEKALEKGMKKCKGTSDADVKKVPQSLILKVVNWVEEEHSADNTKRPVHPKASHITRKLRIKLKNP", "sequence_length": 518, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "54e35c513a7d056b5217448a82e00303d95b74310c6da4fd506656e7e131a684", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZUB7.json", "taxon_id": "3702", "uniprot_accession": "Q9ZUB7", "uniprot_release": "2026_03" } ], "pfam_id": "PF06075", "short_name": "CORD_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06078", "short_name": "DUF937", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf938-pf06080.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06080", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf938-pf06080.yaml" } ], "pfam_ids": [ "PF06080" ], "protein_name": "Methyltransferase-like 26", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMVAAAAERNKEPILCVLRQYVDPAQRGVRVLEVASGSGQHAAHFARAFPNAEWQPSDVDQRCLDSIAATTQAQGLSNVKAPLYLDVTWKWEQWGGIPPRSLDLLLCINMIHISPLNCTEGLFRAAGHLLKTKAVLITYGPYAINGKISPQSNVDFDLTLRCRNPEWGLRDTALLEELGQASGLTLERMVDMPANNKCLIFRKE", "sequence_length": 204, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c9eb57c4a2c61eb07ae1dfc5711501f37906233e44a0f57bc7c31a4f81ce5907", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q497C3.json", "taxon_id": "10116", "uniprot_accession": "Q497C3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf938-pf06080.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06080", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf938-pf06080.yaml" } ], "pfam_ids": [ "PF06080" ], "protein_name": "Methyltransferase-like 26", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLNAAAADRNKDPILSVLKSRVASNRRLFALEISSGTGQHVVHFAKAFPNITWQPSEVETQSLSSIEAYRQYHRLQNVQPPIYLDVSQSWQTWGGFPAESCDLIININMMHISPLACTTGLFHGVGQILKPQGLLLTYGPYAFNGSIVPQSNFDFDQSLRYRNPEWGLRDASFLTTLGQENGLRLEEIVDMPANNKCLLFRKDSVV", "sequence_length": 206, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2878d41812a151e8b1a01af02c1acf0fb4135af14114397dd006f6817e3643c1", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q7ZVJ8.json", "taxon_id": "7955", "uniprot_accession": "Q7ZVJ8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf938-pf06080.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06080", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf938-pf06080.yaml" } ], "pfam_ids": [ "PF06080" ], "protein_name": "Methyltransferase-like 26", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVDQRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTEGLFRAAGHLLKPRALLITYGPYAINGKISPQSNVDFDLMLRCRNPEWGLRDTALLEDLGKASGLLLERMVDMPANNKCLIFRKN", "sequence_length": 204, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "206efd1032511ca292bc7f2a339e755c2704f08624dc258bf87961e5068be413", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96S19.json", "taxon_id": "9606", "uniprot_accession": "Q96S19", "uniprot_release": "2026_03" } ], "pfam_id": "PF06080", "short_name": "DUF938", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/putative-aromatic-acid-exporter-c-terminal-ipr021062.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021062", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/putative-aromatic-acid-exporter-c-terminal-ipr021062.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/arae-1-c-pf11728.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11728", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/arae-1-c-pf11728.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/arae-1-pf06081.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06081", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/arae-1-pf06081.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/putative-aromatic-acid-exporter-c-terminal-domain-superfamily-ipr038323.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038323", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/putative-aromatic-acid-exporter-c-terminal-domain-superfamily-ipr038323.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/putative-aromatic-acid-exporter-c-terminal-domain-1-20-120-940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.120.940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/putative-aromatic-acid-exporter-c-terminal-domain-1-20-120-940.yaml" } ], "pfam_ids": [ "PF06081", "PF11728" ], "protein_name": "Uncharacterized protein YqjA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFKIGYRTIKTALGTALAIYISQLLHLQNFASAGIITILCIQITQKRSLQASWARFSACCLAIAFSYLFFELIGYHPFVIGALLLIFIPITVLLKINEGIVTSSVIILHLYMSGGITPTFIWNEVQLITVGIGVALLMNLYMPSLDRKLIAYRKKIEDNFAVIFAEIERYLLTGEQDWSGKEIPETHQLITEAKNLAYRDVQNHILRYENLHYHYFKMREKQFEIIERLLPKVTSISITVDQGKMIAEFIHDLREAIHPGNTAYKFLKRLADMRKEFEEMPLPATREEFEARAALFHLLGEMEQYLVIKSYFKGIKAQKSLG", "sequence_length": 322, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc83f99167f0ef0878f273da6fc3702ea6b88c5bfbd5d5a98f5519c1da350f10", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P54538.json", "taxon_id": "224308", "uniprot_accession": "P54538", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/arae-1-pf06081.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06081", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/arae-1-pf06081.yaml" } ], "pfam_ids": [ "PF06081" ], "protein_name": "UPF0421 protein YgaE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLGARIFKTGIAITLALYLASWIGLPAPIFAGIAAIFAIQPSIYRSFLIIIDQVQANIIGAVIATVFGLIFGPSPIMIGLTAVIVITIMLKLKIEHTISIALVTVIAILESAGDDFLMFALIRTSTVILGVLSSFIVNLVFLPPKYETKLIHNTVENTEEIMKWIRLSMRQSTEHSILKEDIEKLKEKMIKLDQTYLLYKEERSYFKKTTYVKSRKLVLFRQAIITANRALDTLKKLHRLENEIYHMPEEFQETLTEELDYLLYWHERILMRFVGKIKPHDDAVEEGIRYKQLLTKSFLKNQQNTDEELIDYNMLNIMASAVEYREQLEHLETLITSFQTYHPKDCEIETEE", "sequence_length": 353, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3380fa194bede55dc00f92584c3ca2679d769925e13311e80984327d35308e40", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P71083.json", "taxon_id": "224308", "uniprot_accession": "P71083", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain NCTC 8325 / PS 47)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/arae-1-pf06081.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06081", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/arae-1-pf06081.yaml" } ], "pfam_ids": [ "PF06081" ], "protein_name": "UPF0421 protein SAOUHSC_02103", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQELILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKALEISGENQIKSHILYEVLMIYRLLDSRYA", "sequence_length": 328, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4fb3141f5f8975cbf8473f18105e3e80f874a4e114fc39d3f1a69f06297be0d8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2FX03.json", "taxon_id": "93061", "uniprot_accession": "Q2FX03", "uniprot_release": "2026_03" } ], "pfam_id": "PF06081", "short_name": "ArAE_1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yjbh-pf06082.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06082", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yjbh-pf06082.yaml" } ], "pfam_ids": [ "PF06082" ], "protein_name": "Uncharacterized lipoprotein YjbH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGYLGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSKFNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPQYQPQPQDAILQHSVVANQLTLLKYNAGLADPQIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLAGEPLGHETTLAQKRVEPVVPQSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVMGTADLWLTDHLLTTGSLFANLANNYDKFNYTNPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGAGAEVLYRPLDSNWAFGLDANYVKQRDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGEGDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR", "sequence_length": 698, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7d253f3e04efb08f47227e85529bb214c1513f37efd7fb8e0e71fab488e8a292", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32689.json", "taxon_id": "83333", "uniprot_accession": "P32689", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yjbh-pf06082.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06082", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yjbh-pf06082.yaml" } ], "pfam_ids": [ "PF06082" ], "protein_name": "Uncharacterized lipoprotein GfcD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMAWGYAGNAGNITNPFCRVSDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQASHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFDAPEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGQSEPLQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDGGIFTNIYNNYDKFKSSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDACWALGVDVNYVKQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVGVWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRKYQLYPMTAEREVPVGQ", "sequence_length": 698, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fa0d97767d5ee05f00c51c874294abda7e42cbb1c632011dcb89cd73e98212ec", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75882.json", "taxon_id": "83333", "uniprot_accession": "P75882", "uniprot_release": "2026_03" } ], "pfam_id": "PF06082", "short_name": "YjbH", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "Q06667", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/inositol-phosphate-biosynthesis.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "gomodel:YeastPathways_PWY3O-402", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/inositol-phosphate-biosynthesis.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/inositol-1-3-4-5-6-pentakisphosphate-2-kinase-activity-go0035299.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0035299", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/inositol-1-3-4-5-6-pentakisphosphate-2-kinase-activity-go0035299.yaml" } ], "pfam_ids": [ "PF06090" ], "protein_name": "Inositol-pentakisphosphate 2-kinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQVIGRGGANILIDYGDPTWLWRCCIRWPDLLSSNNSYTIKNISYIKDYVEPLLHGLLCPMYLIDVDIEAIRPILSDFILNLDDKVVKVIKIKNLTNNTSNLILNNHFLKSYCSQNLQTVILELKPKWLYYDTDYCRNCTHNAFKGRGTKYCYNQLLMNPAHLELIFGECNIFPVKFKDAMHEYLRNDNNIFKILYDLQKKLTKNTTPISDIKSINDVNDEHLLLMTLRDVTCFIEWNSAENALHVNIIDVDLKPKEKWTHWTKTYSQLTSSQKIYHTSNK", "sequence_length": 281, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d17b6631c880902a5b5ba7ece1633c26401333ee8ad2b5f551407c3b4b8a0553", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06667.json", "taxon_id": "559292", "uniprot_accession": "Q06667", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ins-p5-2-kin-pf06090.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ins-p5-2-kin-pf06090.yaml" } ], "pfam_ids": [ "PF06090" ], "protein_name": "Inositol-pentakisphosphate 2-kinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELDKMDENDWKYHGEGNKSIVVSHLRHCQVLRLLKVPSEDSAHTRQTAEQTLRHILNIMDYSKHVMKPLLGEKYVHSGEVVRLPLDFLRQMSLKVQQERPELRCDKVMDTFSGCGLCLPDLTQLPLHHLRDHRPPICVEIKPKCGFLPFSRHMTKECKWKVCRFCMHQHYKLANGKWKRLSRYCPLDLFSGSKQRMYVALKNLLEEPQNNLKIFKGGELIFSCKDDAKQQPDLNNLIQHLRPYFPHTNGLYNGHQPGKVILNEFIQVICSALLSGGDSNRSGEPRKMHLSESKPHCEASPFPRDLIRNGHHGLPKDSVLAKILQVQMLDNLDIEGIYPLYKRVEQYLEEFPKERIRLQIDGPYDESFMDTVKSCLNEDDGSVEYAIGKVHQYRVAMTAKDCSVMITFAPCEEDEEHKLNLEKPRFTYSVSILDLDTKPYEGIPHQYKLDSKIVNYYLRSTQAPPPSSLYKERQECTLLFHAV", "sequence_length": 483, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2fabb737b6bddf36e31bd42e3921a8d001f86503d6d3f6a4c1c57ddc8df19d6e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q4JL91.json", "taxon_id": "7955", "uniprot_accession": "Q4JL91", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/inositol-1-3-4-5-6-pentakisphosphate-2-kinase-activity-go0035299.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0035299", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/inositol-1-3-4-5-6-pentakisphosphate-2-kinase-activity-go0035299.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/inositol-pentakisphosphate-2-kinase-n-terminal-lobe-ipr043001.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR043001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/inositol-pentakisphosphate-2-kinase-n-terminal-lobe-ipr043001.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/inositol-pentakisphosphate-2-kinase-n-lobe-3-30-200-110.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.200.110", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/inositol-pentakisphosphate-2-kinase-n-lobe-3-30-200-110.yaml" } ], "pfam_ids": [ "PF06090" ], "protein_name": "Inositol-pentakisphosphate 2-kinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEGKMDENEWSYHGEGNKSLVVAHAQRCVVLRFLKFPPNKKKTSEEILQHLQNIVDFGKNVMKDFLGENYVHCGEVVQLPLEFVKQLCLKIQCERPESRCDKDLDTFSGYAMCLPNLTRLQTFHFAEHRPILCVEIKPKCGFIPFSNDVTHEMKHKVCRYCMHQHLKVATGKWKKISKYCPLDLYSGNKQRMHFALRSLLQETQNNLRIFKNGELIYGCGDARSPVADLKELAHHLKPFFFPSNGLASGPHCTKAVIRELVHVITRVLLSSSEKARAGALRLGLQGPRVCEASPFSRSLHNQGKNTSEHSGLPKGCLLYKTLQVQMLDQLDIEGLYPLYKRVEQYLEEFPEERKTLQIDGPYDEVFYQKLLDLSTEDDGTVAFALTKVQQYRVAMTAKDCSIMIALSPCLQGTSSDQRPVIPSSRSRLAFSVSVLDLDLKPYESIPHQYKLDSKIVNYYSKTVHAKDDTVRSTRFKEHEDCTLVLHKV", "sequence_length": 489, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1e818239a855066c228812b84640d18498c9f5414d0b77e98504331047346047", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P1C1.json", "taxon_id": "10090", "uniprot_accession": "Q6P1C1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/inositol-1-3-4-5-6-pentakisphosphate-2-kinase-activity-go0035299.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0035299", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/inositol-1-3-4-5-6-pentakisphosphate-2-kinase-activity-go0035299.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/inositol-1-3-4-6-tetrakisphosphate-2-kinase-activity-go0102731.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0102731", "section": "canonical_examples", "url": 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"MKKSKIAAGVVVALAAVWCTSAWFTGKKAEEEYLYQLEQLNQLFTKTEALEESKIFYKNIKFERGLFASHIQDQIEIHKANETIIIPLSSTLYHGPLPLDRVAKLNFVPAIFSSQTLLGKNATTQAFFDITESEKPLQLNFAMNYSLSGNAELKLASGQYHNEQSKTDFDWSNVVLNIDLNQNTPNNYVLSVDTFNSNAPNHAVSTASSIKIKDLVVQGSLQSTKWPFIYSGNINSKIGYFEQNTESAESGEKFSLIQKNSQANLTTQVEGDTVNIINKTNLDELHINGNNLGKVTNNVEFNHIDGNALQELLNILVAIGKADSECLYLKHWCKNYNKQAWPLRIISLKLSLPLFLFLMKKAKWHWI", "sequence_length": 367, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b9585e40e96f33905ab77d3eb7f6fe078fc7176eee67a1751180648a30fb40fb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44132.json", "taxon_id": "71421", "uniprot_accession": "P44132", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf945-pf06097.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06097", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf945-pf06097.yaml" } ], "pfam_ids": [ "PF06097" ], "protein_name": "Protein YdgA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQLKLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFPLAQLKKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLKPLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLKTDGSSTLASFGERVGNQKLSLEKMTISVEGKELALLEGMEISGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELYQEKVTEAFFSALPLMLKGDPVITIAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLAQEVDRSVKSLDAKLTIPVDMATEFMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFRLTTLQDNTITTSLQYANGQITLNGQKMSLEDFVGMFAMPALNVPAVPAIPQQ", "sequence_length": 502, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "56db53b87455d34dd0cb3ec1402a660542b51be14ae799f4f2c86c7ec250a75a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P77804.json", "taxon_id": "83333", "uniprot_accession": "P77804", "uniprot_release": "2026_03" } ], "pfam_id": "PF06097", "short_name": "DUF945", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/vps62-pf06101.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06101", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/vps62-pf06101.yaml" } ], "pfam_ids": [ "PF06101" ], "protein_name": "Hypothetical protein At1g04090", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLGYKCLHWNNLIDLPPLKDPETFSLPSSIPHWPPGQGFGSGTINLGKLQVIKITDFEFIWRYRSTEKKKNISFYKPKGLLPKDFHCLGHYCQSDSHPLRGYVLAARDLVDSLEQVEKPALVEPVDFTLVWSSNDSAENECSSKSECGYFWLPQPPEGYRSIGFVVTKTSVKPELNEVRCVRADLTDICEPHNVIVTAVSESLGVPLFIWRTRPSDRGMWGKGVSAGTFFCRTRLVAAREDLGIGIACLKNLDLSLHAMPNVDQIQALIQHYGPTLVFHPGETYLPSSVSWFFKNGAVLCEKGNPIEEPIDENGSNLPQGGSNDKQFWIDLPCDDQQRDFVKRGNLESSKLYIHIKPALGGTFTDLVFWIFCPFNGPATLKLGLVDISLISIGQHVCDWEHFTLRISNFSGELYSIYLSQHSGGEWIEAYDLEIIPGSNKAVVYSSKHGHASFPRAGTYLQGSTMLGIGIRNDTARSELLVDSSSRYEIIAAEYLSGNSVLAEPPWLQYMREWGPKVVYDSREEIERLVNRFPRTVRVSLATVLRKLPVELSGEEGPTGPKEKNNWYGDERC", "sequence_length": 572, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bfce506d9e7cd6e39d85fb667b4f894d50f7ba1bc67a783ccb5df48b1c185491", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q501D1.json", "taxon_id": "3702", "uniprot_accession": "Q501D1", "uniprot_release": "2026_03" } ], "pfam_id": "PF06101", "short_name": "Vps62", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rrp36-pf06102.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06102", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rrp36-pf06102.yaml" } ], "pfam_ids": [ "PF06102" ], "protein_name": "rRNA biogenesis protein RRP36", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSYYFKNLKPDLNSDVEEDDGNLLESIMANKSKREIDEQESSDDELKTLSFGSLKKAETVIDEEDFKDTKPVHKKPITTTYREESFDEDEDSEDQSDEDAGFFEEDSEDETHHGQKVPKKKSKHAPVEQSSKKRVPRVRNIPGLEIPRNKRSNLYQDIRFDKSTGKALDSSIIRKRYQFLDEYREKEIDELQKLLQERKFLSKIDQGEREEMEQRLKSMKSRLQSMKNKDLEREILKEYENDMNKNNNTRYHLKKSEKRKVVQKWKFDHMKAKQREKVMERKRKKRLGKEFKQFEFHNRR", "sequence_length": 300, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b493a431a537c53b27c182d4888da25e73960ff18315b777beb1b67d86330b1f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12481.json", "taxon_id": "559292", "uniprot_accession": "Q12481", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rrp36-pf06102.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06102", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rrp36-pf06102.yaml" } ], "pfam_ids": [ "PF06102" ], "protein_name": "Ribosomal RNA processing protein 36 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKAGSRARAEAEGPHRAMEGGEVTGDRLKADTPDVSFEELLRLQGQGRPKAHKQLVAGNSTRTRSPQQPVCVADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGDYNPEVFDKTYQFLNDIRAKEKQLVKKQLKRHRSGEERDKLQQLLQRMEQQEMAQQERKQQQELRLALKQERRAQAQQGHRPYFLKKSEQRQLALAEKFKELRRSKKLESFLSRKRRRNAGKDRRHLPLSKE", "sequence_length": 244, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c9f92f98cd24dc59ef25dfc1be2849d4012ad374a0fab94674ea2b00758d7003", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UFY0.json", "taxon_id": "10090", "uniprot_accession": "Q3UFY0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rrp36-pf06102.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06102", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rrp36-pf06102.yaml" } ], "pfam_ids": [ "PF06102" ], "protein_name": "Ribosomal RNA processing protein 36 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGANYRAGAGAGAGARRPRGARDREEDGGGLEPAAVARDLLRGTSNMSFEELLELQSQVGTKTYKQLVAGNSPKKQASRPPIQNACVADKHRPLEMSAKIRVPFLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTYQFLNDIRAKEKELVKKQLKKHLSGEEHEKLQQLLQRMEQQEMAQQERKQQQELHLALKQERRAQAQQGHRPYFLKKSEQRQLALAEKFKELKRSKKLENFLSRKRRRNAGKDRRHLPLSKE", "sequence_length": 259, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb74ce1b6e08447b179e24ec8f8c5c6349d5f22ac43b9b0a0dffb37e8383f180", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96EU6.json", "taxon_id": "9606", "uniprot_accession": "Q96EU6", "uniprot_release": "2026_03" } ], "pfam_id": "PF06102", "short_name": "RRP36", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf948-pf06103.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06103", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf948-pf06103.yaml" } ], "pfam_ids": [ "PF06103" ], "protein_name": "Uncharacterized protein YoxC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIIVYISLAVLAVSIIFLGVTVIQNKKKIDPALKELSSVTQAMQKQIEGLKTETELLTQKQKKIQQDVQIKKYTLQQTAAEVKEVPQAVKEVWQAGHFNSR", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4af8772b37052ff318ec5407083adec0267c8c95b8e3b6beb8bc4896391387fb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P28670.json", "taxon_id": "224308", "uniprot_accession": "P28670", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf948-pf06103.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06103", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf948-pf06103.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/methyl-accepting-chemotaxis-protein-1-10-287-950.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.287.950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/methyl-accepting-chemotaxis-protein-1-10-287-950.yaml" } ], "pfam_ids": [ "PF06103" ], "protein_name": "UPF0478 protein YtxG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIIILYLSVALIAVAFLVLVIYLSKTLKSLQLTLKNVASTLEGLEGQMKGITTETAELLHKTNRLAEDIQEKSEKLNTVVHAVQGVGASVQQFNTSMKQAAGSVSASVRENQDKINQVVTWSQAAMEIWEKWKQKKKSAL", "sequence_length": 140, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "77a257176d5a0699da3dc89260e6984c67b060044797ef08fcb4213c5f0a73e2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P40779.json", "taxon_id": "224308", "uniprot_accession": "P40779", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf948-pf06103.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06103", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf948-pf06103.yaml" } ], "pfam_ids": [ "PF06103" ], "protein_name": "UPF0478 protein SSP1024", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEWILPIAGIIAAVAFLILVIGIVVVLLSVKKNLDHVAKTLDGVEGQVQGITRESTDLLHKANRLTEDIQDKSDRLNSVVDAVKGIGDSVQTLNGSVDRVTNSITHNISQNEDKISQVVQWSNVAMEVADKWQNRRNRRDSANYKTSSVANETNHSYTTRVDNK", "sequence_length": 164, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9b42375f2943adcfef3a1700c7ad1c7689ea5236ec7a6b0725ae23f9cf9c6148", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q49YH0.json", "taxon_id": "342451", "uniprot_accession": "Q49YH0", "uniprot_release": "2026_03" } ], "pfam_id": "PF06103", "short_name": "DUF948", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06106", "short_name": "SAUGI", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf951-pf06107.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06107", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf951-pf06107.yaml" } ], "pfam_ids": [ "PF06107" ], "protein_name": "Uncharacterized protein YyzM", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADKDFGLNDIVEMKKPHPCGANSWKIIRMGMDIRIKCEGCSHSVMIPRREFERKLKKVLVKHEEPTS", "sequence_length": 68, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a8e9fe0cf1ad0f6ddaed2a0a2d2d69f614214eefdac1a9ff3cfa2c3a8a2a602b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0H3V8.json", "taxon_id": "224308", "uniprot_accession": "C0H3V8", "uniprot_release": "2026_03" } ], "pfam_id": "PF06107", "short_name": "DUF951", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06108", "short_name": "DUF952", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/human-trx-related-protein-14-trp14-like-family-composed-of-proteins-si-cd02952.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd02952", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/human-trx-related-protein-14-trp14-like-family-composed-of-proteins-si-cd02952.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/thioredoxin-domain-containing-protein-17-like-domain-ipr010357.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010357", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/thioredoxin-domain-containing-protein-17-like-domain-ipr010357.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/txd17-like-trx-pf06110.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06110", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/txd17-like-trx-pf06110.yaml" } ], "pfam_ids": [ "PF06110" ], "protein_name": "Thioredoxin domain-containing protein 17", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARYEEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFSED", "sequence_length": 123, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "84e24da1b0033317e65a63c27d0af425041d6250c2b7d65ee075853005a853cb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BRA2.json", "taxon_id": "9606", "uniprot_accession": "Q9BRA2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/human-trx-related-protein-14-trp14-like-family-composed-of-proteins-si-cd02952.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd02952", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/human-trx-related-protein-14-trp14-like-family-composed-of-proteins-si-cd02952.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"data/traits/sequence/pattern/hth-laci-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/hth-laci-1.yaml" } ], "pfam_ids": [ "PF06114" ], "protein_name": "Radiation response metalloprotease IrrE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDPAPPPTALAAAKARMRELAASYGAGLPGRDTHSLMHGLDGITLTFMPMGQRDGAYDPEHHVILINSQVRPERQRFTLAHEISHALLLGDDDLLSDLHDEYEGDRLEQVIETLCNVGAAALLMPAELIDDLLTRFGPTGRALAELARRADVSATSALYALAERTAPPVIYAVCALSRQEDEGEGGGAKELTVRASSASAGVKYSLSAGTPVPDDHPAALALDTRLPLAQDSYVPFRSGRRMPAYVDAFPERQRVLVSFALPAGRSEPDADKPEAPGDQS", "sequence_length": 281, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6cb3835c251ab8635d6bf91fef97c431aa451d553f1b124e49b57d6c79875cfc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C1CZ84.json", "taxon_id": 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"data/traits/sequence/family/pfam/peptidase-m78-pf06114.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06114", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/peptidase-m78-pf06114.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-10-10-2910-1-10-10-2910.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.10.2910", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-10-10-2910-1-10-10-2910.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P39780", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06114" ], "protein_name": "Phage-like element PBSX protein XkdA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d3eee2f2151530d5bb07342487f497e0028627dc9209818f91c4f5b4a42a3d95", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGDYLSHLEEYVKNLYGRLGITSPHHIDMLKIAKDLDIWVHFEDMGSMMVKYDGMYSIVLNQKKSREEQWEDFGHELCHVLKHAGNHFQMNKLFRELQEFQANQFMYHFCVPTFMLLQMELPQWRSQALATIAAVFRVTKEFADKRLDMFERRKAGIQFQKRLAYLLSHKRPNAYEEGDQQHLQVAEEKALYHIGKNI", "sequence_length": 198, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d3eee2f2151530d5bb07342487f497e0028627dc9209818f91c4f5b4a42a3d95", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P39780.json", "taxon_id": "224308", "uniprot_accession": "P39780", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"MAQKLYAGAKLRELRVKLGLTQKVFAERLGASLPYLNQMENNHRPVSATVVLALAQEFGVDVTKLTTSEAERIVTDMREALADPVFTDSPPLADLRLVASNAPAFARAFLDLHRAYRQTHERLASLDEALGRDEADLRPSPWEEVRDFFHYCDNYLDAVDRAAEHYAAPGGVRRDVFSAAMETLTRAGLDLQISDMPAIRSREGNALRLSARAAAPTQRFQLLHQVALLTQNDLLEATLDLARFQTAEAREIAKIGLANYFAGAALLPYRPFLQAAAETRHDLERLADLFGASIEQVAHRLSTLQRPGAKGVPFFFVRVDQAGTITKRHSATRFQFARFGGACPLWNVHRAFETPGRFLRQLAQTPDGVRYLLLARDVSKPGGSFTAPVRRYAIGLGCEVQHADALVYADGLDLKGSFEPIGISCRICDRQECHQRSVPPLEKRLRVDPDRRGLLPYEIVD", "sequence_length": 461, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f60a89bf8b56520ee8811c0fbd8975f17040d3f4d1d56ab5885de8bf052a8cd4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3J4E6.json", "taxon_id": "272943", "uniprot_accession": "Q3J4E6", "uniprot_release": "2026_03" } ], "pfam_id": "PF06114", "short_name": "Peptidase_M78", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06115", "short_name": "DUF956", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 12, "discovery_scanned": true, "example_count": 12, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nido-pf06119.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06119", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nido-pf06119.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A1Z877", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00058", "PF06119", "PF07474", "PF07645", "PF12947" ], "protein_name": "Nidogen", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a9413ba40af8cf992c8b29f0711fc664c04297db4f37d22956b5429329ab259c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPTFGSKLLACLLLSSVILVSGQFEHYLDSLRASELYEFEDGSLGSIHLLPKGDSETIVLQLEQPIHFYGEQYEQLYINTNGILTFNSEFPEYLNQPFPLEYASIAAFYSNVDTSFSDEGTSISLFESKEQSILDRASSLVRYAFSSQSEFEARQVIVATWRNVGYFDSKTDRLNTFQVALIANEQSTFVQFIYPDGGLNWLQGETAGLGLPDIRAQAGFVAEDGRFYTLNGSGSENARFLSESTNLGVPGVWLFEVAPIENEQNVRSPDNAESLTESPALALSCQAHAHQCHEKAECHDKAEGYCCVCGSGFYGNGKSCLANDQPIRVTGTLTGELNKQPVSEEAKLQSYVVTSEGRTYTTINPLTPELGAQLRLVLPLLTTVPWLFAKSVGGVANGYQLTGGVYTHVSRLQFDSGENLHVNQTFEGLNYWDQLSVKIEIYGEVPAVAADAVLILPDYVEEYTFERPGELKSVQVLNINITEEQRVLGLQVEQRILYRSCLRDDEADPSATKVLQKISKVALDYVERDQALRIGAMSKVGVTPESNACNDGTADCVENSVCVPYEDTYRCDCYHGFAAQLDERGVEVCLDIDECATGSHVCDENAVCDNTEGGFNCYCTEGFEGNGYRCLSNSTADNIEYPPAVEGQAEPTSEPSPNPSPYPDQGQDQEREREDDQYPQPNPYPYPEEQIPQHPDECYRCSKDADCYQGRCTCHEGFDGDGYTCTNICGHGEVWENGRCEPLLLERHDVDPLCDALGECRCPYGYELSEDSQRCTYVQEFDGERNADLIPCDVDENCHINATCNWYGQELRHICTCQPGFRGDGYNCDPISDDSCAIRPDICDVHADCVYEEHLGKSECQCQAGYTGNGFNCQLAAECQSAEHCGENAFCDDGVCRCQADFERDVSDRCVPAGRCGSVFCGSNAICKWDSAEGVQYCDCLDGYQGDALTGCTSKPLSCHVLNNCGIHATCEPTEDPANYECQCIAGFKGDGYVCIEEQNCLNNPTLCDMNAQCRSTNSGLVCVCNQGFFGNGSLCQERQHQDSDFLIVSQGVMIARVPLNGRNVRPISVAQMAIGLDKDCVEGRVYWGDISTKKIVSTKYDGTDLRPFITTDIESPEGIAIDVISRRLYWADSAKDTIEVASLDDPSLRAVIINKQLVNPRGIAVDPYREKLFWSDWDRESPKIEMSNLDGTGRELLLGKDDVTLPNSLVVLENSGEVCYADAGTKKVECIEPQNRQIRTISNELSYPFGITFTHDQFYWTDWTTKKVEIVDSLGARQTPIQPPFFGSHKMYGMTVVEQHCPQYQSPCQISNGGCTDSRLCLVNRQAPSGKSCKCTSASTGCTVLAPGY", "sequence_length": 1350, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a9413ba40af8cf992c8b29f0711fc664c04297db4f37d22956b5429329ab259c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1Z877.json", "taxon_id": "7227", "uniprot_accession": "A1Z877", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/zp-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00682", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/zp-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O75443", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00094", "PF00100", "PF01826", "PF06119", "PF08742", "PF12714" ], "protein_name": "Alpha-tectorin", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "617b1ec05ba1acdb539a6171032d4e3b6c0e948166759f9c5c17b902366f48f0", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNYSSFLRIWVSFIFALVQHQAQPRELMYPFWQNDTKTPKVDDGSSSEIKLAIPVFFFGVPYRTVYVNNNGVVSFNVLVSQFTPESFPLTDGRAFVAPFWADVHNGIRGEIYYRETMEPAILKRATKDIRKYFKDMATFSATWVFIVTWEEVTFYGGSSTTPVNTFQAVLVSDGSYTFTLFNYYEINWTTGTASGGDPLTGLGGVMAQAGFNGGNLTNFFSLPGSRTPEIVNIQETTNVNVPGRWAFKVDGKEIDPANGCTSRGQFLRRGEVFWDDLNCTVKCRCLDFNNEIYCQEASCSPYEVCEPKGKFFYCSAVETSTCVVFGEPHYHTFDGFLFHFQGSCAYLLARQCLQTSSLPFFSVEAKNEHRRGSAVSWVKELSVEVNGYKILIPKGSYGRVKVNDLVTSLPVTLDLGTVKIYQSGISTAVETDFGLLVTFDGQHYASISVPGSYINSTCGLCGNYNKNPLDDFLRPDGRPAMSVLDLGESWRVYHADWKCDSGCVDNCTQCDAATEALYFGSDYCGFLNKTDGPLWECGTVVDPTAFVHSCVYDLCSVRDNGTLLCQAIQAYALVCQALGIPIGDWRTQTGCVSTVQCPSFSHYSVCTSSCPDTCSDLTASRNCATPCTEGCECNQGFVLSTSQCVPLHKCGCDFDGHYYTMGEFFWATANCTVQCLCEEGGDVYCFNKTCGSGEVCAVEDGYQGCFPKRETVCLLSQNQVLHTFDGASYAFPSEFSYTLLKTCPERPEYLEIDINKKKPDAGPAWLRGLRILVADQEVKIGGIGASEVKLNGQEVELPFFHPSGKLEIYRNKNSTTVESKGVVTVQYSDIGLLYIRLSTTYFNCTGGLCGFYNANASDEFCLPNGKCTDNLAVFLESWTTFEEICNGECGDLLKACNNDSELLKFYRSRSRCGIINDPSNSSFLECHGVVNVTAYYRTCLFRLCQSGGNESELCDSVARYASACKNADVEVGPWRTYDFCPLECPENSHFEECITCTETCETLTLGPICVDSCSEGCQCDEGYALLGSQCVTRSECGCNFEGHQLATNETFWVDLDCQIFCYCSGTDNRVHCETIPCKDDEYCMEEGGLYYCQARTDASCIVSGYGHYLTFDGFPFDFQTSCPLILCTTGSRPSSDSFPKFVVTAKNEDRDPSLALWVKQVDVTVFGYSIVIHRAYKHTVLVNSERLYLPLKLGQGKINIFSFGFHVVVETDFGLKVVYDWKTFLSITVPRSMQNSTYGLCGRYNGNPDDDLEMPMGLLASSVNEFGQSWVKRDTFCQVGCGDRCPSCAKVEGFSKVQQLCSLIPNQNAAFSKCHSKVNPTFFYKNCLFDSCIDGGAVQTACSWLQNYASTCQTQGITVTGWRNYTSCTVTCPPNSHYESCVSVCQPRCAAIRLKSDCSHYCVEGCHCDAGYVLNGKSCILPHSCGCYSDGKYYEPKQLFWNSDCTRRCRCFRRNVIQCDPRQCKSDEECALRNGVRGCFSTKTSYCLAAGGGVFRTFDGAFLRFPANCAFVLSTICQKLPDISFQLIINFDKWSAPNLTIISPVYFYINEEQILINDRNTVKVNGTQVNVPFITGLATKIYSSEGFLVIDTSPDIQIYYNGFNVIKISISERLQNKVCGLCGNFNGDLTDDYVTLRGKPVVSSVVLAQSWKTNGMQKRPLAPSCNELQFSQYAAMCDNVHIQKMQGDGYCLKLTDMKGFFQPCYGLLDPLPFYESCYLDGCYSHKKFQLCGSLAAYGEACRSFGILSTEWIEKENCSGVVEDPCVGADCPNRTCELGNGRELCGCIEPPPYGNNSHDIIDAEVTCKAAQMEVSISKCKLFQLGFEREGVRINDRQCTGIEGEDFISFQINNTKGNCGNIVQSNGTHIMYKNTLWIESANNTGNIITRDRTINVEFSCAYELDIKISLDSVVKPMLSVINLTVPTQEGSFITKMALYKNASYKHPYRQGEVVLTTRDVLYVGVFVVGADATHLILTLNKCYATPTRDSNDKLRYFIIEGGCQNLKDNTIGIEENAVSLTCRFHVTVFKFIGDYDEVHLHCAVSLCDSEKYSCKITCPHNSRIATDYTKEPKEQIISVGPIRRKRLDWCEDNGGCEQICTSRVDGPLCSCVTGTLQEDGKSCRASNSSMELQVWTLLLIMIQISLWHFVYKSGTTS", "sequence_length": 2155, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "617b1ec05ba1acdb539a6171032d4e3b6c0e948166759f9c5c17b902366f48f0", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O75443.json", "taxon_id": "9606", "uniprot_accession": "O75443", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nido-pf06119.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06119", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nido-pf06119.yaml" } ], "pfam_ids": [ "PF00058", "PF00086", "PF06119", "PF07474", "PF07645", "PF12662", "PF12947", "PF14670" ], "protein_name": "Nidogen-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDASGCSWAMWTWALLQLLLLVGPGGCLNRQELFPFGPGQGDLELEAGDDVVSPSLELIGELSFYDRTDITSVYVTTNGIIAMSEPPATEYHPGTFPPSFGSVAPFLADLDTTDGLGNVYYREDLSPFIIQMAAEYVQRGFPEVSFQPTSVVVVTWESVAPYGGPSSSPAEEGKRNTFQAVLASSNSSSYAIFLYPEDGLQFFTTFSKKDESQVPAVVGFSKGLVGFLWKSNGAYNIFANDRESIENLAKSSNAGHQGVWVFEIGSPATAKGVVSADVNLDLDDDGADYEDEDYDLVTSHLGLEDVATPSPSHSPRRGYPDPHNVPRILSPGYEATERPRGVPTERTRSFQLPAERFPQHHPQVIDVDEVEETGVVFSYNTGSQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLPLAPIGGIIGWMFAVEQDGFKNGFSITGGEFTRQAEVTFLGHPGKLVLKQQFSGIDEHGHLTISTELEGRVPQIPYGASVHIEPYTELYHYSSSVITSSSTREYTVMEPDQDGAAPSHTHIYQWRQTITFQECAHDDARPALPSTQQLSVDSVFVLYNKEERILRYALSNSIGPVRDGSPDALQNPCYIGTHGCDSNAACRPGPGTQFTCECSIGFRGDGQTCYDIDECSEQPSRCGNHAVCNNLPGTFRCECVEGYHFSDRGTCVAAEDQRPINYCETGLHNCDIPQRAQCIYMGGSSYTCSCLPGFSGDGRACRDVDECQHSRCHPDAFCYNTPGSFTCQCKPGYQGDGFRCMPGEVSKTRCQLEREHILGAAGGADAQRPTLQGMFVPQCDEYGHYVPTQCHHSTGYCWCVDRDGRELEGSRTPPGMRPPCLSTVAPPIHQGPVVPTAVIPLPPGTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQCPQGHNYCSVNNGGCTHLCLPTPGSRTCRCPDNTLGVDCIERK", "sequence_length": 1245, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bdac5578a6eb7068be9aa11cf50ac0d86b316f7e919e15cbe12dd2dac0bd85ac", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P10493.json", "taxon_id": "10090", "uniprot_accession": "P10493", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/g2f-pf07474.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07474", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/g2f-pf07474.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/thyroglobulin-1-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00484", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/thyroglobulin-1-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nido-pf06119.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06119", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nido-pf06119.yaml" } ], "pfam_ids": [ "PF00058", "PF00086", "PF06119", "PF07474", "PF07645", "PF12662", "PF12947", "PF14670" ], "protein_name": "Nidogen-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLASSSRIRAAWTRALLLPLLLAGPVGCLSRQELFPFGPGQGDLELEDGDDFVSPALELSGALRFYDRSDIDAVYVTTNGIIATSEPPAKESHPGLFPPTFGAVAPFLADLDTTDGLGKVYYREDLSPSITQRAAECVHRGFPEISFQPSSAVVVTWESVAPYQGPSRDPDQKGKRNTFQAVLASSDSSSYAIFLYPEDGLQFHTTFSKKENNQVPAVVAFSQGSVGFLWKSNGAYNIFANDRESVENLAKSSNSGQQGVWVFEIGSPATTNGVVPADVILGTEDGAEYDDEDEDYDLATTRLGLEDVGTTPFSYKALRRGGADTYSVPSVLSPRRAATERPLGPPTERTRSFQLAVETFHQQHPQVIDVDEVEETGVVFSYNTDSRQTCANNRHQCSVHAECRDYATGFCCSCVAGYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPIVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLPLAPVGGIIGWMFAVEQDGFKNGFSITGGEFTRQAEVTFVGHPGNLVIKQRFSGIDEHGHLTIDTELEGRVPQIPFGSSVHIEPYTELYHYSTSVITSSSTREYTVTEPERDGASPSRIYTYQWRQTITFQECVHDDSRPALPSTQQLSVDSVFVLYNQEEKILRYALSNSIGPVREGSPDALQNPCYIGTHGCDTNAACRPGPRTQFTCECSIGFRGDGRTCYDIDECSEQPSVCGSHTICNNHPGTFRCECVEGYQFSDEGTCVAVVDQRPINYCETGLHNCDIPQRAQCIYTGGSSYTCSCLPGFSGDGQACQDVDECQPSRCHPDAFCYNTPGSFTCQCKPGYQGDGFRCVPGEVEKTRCQHEREHILGAAGATDPQRPIPPGLFVPECDAHGHYAPTQCHGSTGYCWCVDRDGREVEGTRTRPGMTPPCLSTVAPPIHQGPAVPTAVIPLPPGTHLLFAQTGKIERLPLEGNTMRKTEAKAFLHVPAKVIIGLAFDCVDKMVYWTDITEPSIGRASLHGGEPTTIIRQDLGSPEGIAVDHLGRNIFWTDSNLDRIEVAKLDGTQRRVLFETDLVNPRGIVTDSVRGNLYWTDWNRDNPKIETSYMDGTNRRILVQDDLGLPNGLTFDAFSSQLCWVDAGTNRAECLNPSQPSRRKALEGLQYPFAVTSYGKNLYFTDWKMNSVVALDLAISKETDAFQPHKQTRLYGITTALSQCPQGHNYCSVNNGGCTHLCLATPGSRTCRCPDNTLGVDCIEQK", "sequence_length": 1247, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e67c82dbf831a44abfa16baf171ae0a74e5874fee911a96a4e1a6c84047e984", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P14543.json", "taxon_id": "9606", "uniprot_accession": "P14543", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/amop-pf03782.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03782", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/amop-pf03782.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c8-3-muc4-pf23263.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23263", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c8-3-muc4-pf23263.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nido-pf06119.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06119", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nido-pf06119.yaml" } ], "pfam_ids": [ "PF00084", "PF00094", "PF03782", "PF06119", "PF23263" ], "protein_name": "Defecation cycle abnormal dec-7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWTARHAVALLVVLTYAYSSILPPGTTFVQSIRDIFRFQEQLKKENVEDTICSETPPESSIPNRDELLELIRKSKIEDHKFDEHVRKKRQLSRISYQEYLDNLGKADYDVRIEEGWTEILYPFGTWAMDKQLMGQAGRETQTNLGFDCPFFGFRFNYTMVYPMGMLSFGLPPFSAPPWTFPNPAWPKQRDHSFVAAFYADAMFQWIGNTKISNVFFRSVHRPRLDDDEVYERNSQTNYGAPNYQQAGAQSAANQQFSNPSQYSQNLNAYSQNQQYNTQLLQQQQQIYGKRKKRQMPGRVSQPGMVVDPWLLDNITRHIQDGYTGANGFRAEHAFIATWYRMAHGGAARALDVSQFEHVKDWQNTFQVVLASDEIRTFAIFNYARLNWTSSNEAGGLDGFGGKQAAMAGFNGGNGTGWYGLPYSGEGRLWKLGYFSNVLTPGRWIHRVDEVIIPAGCTNASNGGMMTAPPWGPMHGGMAINVSGPCLRPADSVKVNFENWQTSCTRLSRVRARCIMPMFHKIGLVPIRMSRDGGQSFPFFGKFYVVNSERAPASVSLKDSVDNKTNRWYEPYAQELALGWQAMNLTWNTGARVDISLFGYWEDADRSHFERIDYLARGISNTGSYSFRPQQLTKQFLLRDAWQKFHFGFVQVALADAEDGVMWSKPTPFPWYHLHEWERYYGRNWPIDMCIEWFEYDGKRNNFQIDLTTDFPCPCKLPQAMLDLGRFMPIMDCDKDGDTSCPFNKGAQHCIQSVQPTFSGSSQQCCYDYDGYLMFTDDWEPDGDYTTFFQPGTPARAHRYGAAPYRLPPFIPTLSNYQLDLNPYRTCCKYADHCEFYYWRRMTNGCQDYRAPAAGYIYGEPHVITYDGIRYTMPGKGYYVLTMSDSPYHKLMVQVRLEQPDDTLWHAHVNATVITGVAVQENDSSIVQVYARKPMRRWRYRTDVYVDGTRRFFDKPHWKHQQFKHLDIRNPLQNMNQSEIVIMLKSGVGIRIFEGFGMLDVMVTLPPSYNTTCRPGESLSSSLNAPRGQRRCYTTLGLLGTYNNDPADDLTTPSGTVTRVQNPTTTASTTQMIYEQFASFWKIDGTNDKIGGVLFQDKFKPIYNPLLFAESDYRPVYWPQTIDMNASRVFTMEQVVSTCQNNPECEYDFIMTGRKEVGLTTLRRQKEFFALQKTGSKQLISCGPLLKKEGVVKTPPAANYLDGDKVVFSCKPKYYIHGDIERVCRNGTWSPGWWAWCRDRNLEYALKWMTALLSIFGISLIFVIFFCILWNIRKKKQAAHAERLQLKEQSDRLNKLENERIFGTSPEKTPLIETDFRSNFNMNQPSRPIPSQPPSSQYSPPVFAAPPPPSQPTRLPTYTNAISQQQRQFEPPRPPRGNMRFETSAI", "sequence_length": 1385, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d097cbf6596046db508406b48f8b9086096b6f711561261be8ffbcea6580b2c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P34501.json", "taxon_id": "6239", "uniprot_accession": "P34501", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nido-pf06119.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06119", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nido-pf06119.yaml" } ], "pfam_ids": [ "PF06119", "PF12947" ], "protein_name": "Dendrite extension defective protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLAHTHRINKCLYGQNQMRNRHALLGALPPIFLLLLPLISCMKFDPERIAARLRIDEKWDQLDAFQSIKSRRGRQIQPKEISIQVTAPLFSSRLFDYGTTAGDEELPQALDVGKKLDLVHPISFFGSDYKTIYILSNGAVGFEASSRSYKSGILPSSTRFLAPFWNRNDLRNGGKVYYREVTKGRVLERGQSEIRYQYDKNVKVKSALIITWDKMQPLNTAALPEENTNTFQAAIFITANGTFANFIYSNIGWTQGAEAGFNAGDATNHFKLPTSGTPNIMYLEEYGNTGIPGEWMFELSELRVISCKSGIKGDTCDQECSNGEWGPDCAYCCHCSEGTCHPISGDCQRGCATCWDGVACQTRQEKCATKTQCASNALSFNDYDRCGEPIQRCQCLNGYKGDGYNNCEDVDECKTNSTICHKNAICTNTPGRYFCMCKEGFSGDGQNDCSQSFLFQYDTHHQLPRKKNSKMEWNLKKPLKIFGETTEKLTVTSTGLIAINEVNRDNGRLEDMQLVGIAPFFGPIDLSRNGAVSVEEVDDVEVLRRVTRTIGENYNDPTFVAKSALVVTFSNVTDGRQTKGNTFQALLIDGSNSKNEKMTFVELMYRDLPWASGAEAGILSSDASSSILLPASGTEAISQLSKNSNIKQPGTWLYRIDKAQLMPCAQPIQVPPYCDRLLSTAPRLPSKLLEEKKEGLTLPSPGAFLVDQPSETIVPTLVRGGGTVTRGRNVLTVTTSPIGNQQRQQTTKAVTRPRPNFSSTPHRPIVSLSDEDFELGPDAFEVTFPPFVTVQPELFRPNQRNGVQKSTQRPLPDFSIRTPLKEEATTSVPREKTSSAAPAHSPIEEMSENEESPFEAGSFDGEAVKFNEELEAIDKALQTTKKQRPELSVTPQPEDLSGDARVIETTEEDEEEAEISTETTTEMSSTTTTTKAHTTTTTMMIPTEAPPSIFVFTTTQKPRAQSTTQKRIIVQQPSIVVNSQPPKQRNDNQPTVNVGHAEEQSPRLAILLPVMIILAWLVILVCIGAVVCCKRRNSRESSQLRAMYGAAYGVRPTAYESKRKESTYEDHLERAARLSGQPALSGQQAGKVSLYGSYWNLEPLSNHSPARLSTQERQSPPSFVNNGYTNQTTRYTYAGHY", "sequence_length": 1137, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4447232becc3bf9fc272a00e45b92308598378b040a7f4edfa582eed806fd093", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P41950.json", "taxon_id": "6239", "uniprot_accession": "P41950", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/amop-pf03782.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03782", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/amop-pf03782.yaml" } ], "pfam_ids": [ "PF00084", "PF00094", "PF03782", "PF06119", "PF23263" ], "protein_name": "Protein mesh", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRFKLFVVCALACGFMAFVLANENISTEEFEDQIINAVPEPVKVTKPKAQAEFVEVPKATPAPKKAEADNPKTKPLALQKPTLIPVVHVSSRGTDDILTVAGLKPEKMFGALIMPNDYLGELYDVDNSGYNWDPNNNVAPPTTYSTAAGGYTITAARLAELRSNFMYWYFDKDMYGGRGDYQFDIHASMTQLHKNLNFQLPFYGFRFNYTRLSLNGYLEFSDPPEYLTYPLVFPIKDWPAKRDPSFMGIFFSKCRVGRIYPSDIDQRTPGVYFRVERDLMGRTDRFGVEVRERTMWDIRQGVVGADTFIPKHVVIATWKNVSFAGGIDNSLYTTNTFQMVLATDEVYTYIIFNYAVLNWLSHTEAGGDTTKGEGGVPAYVGFNAGNGTQAYEYNPYSQNMVIRDLANRGWANGFPGRHIFRVDEQILIGSCNKDIDAALLPLTFAPESGNMLGGQVVNITGPCFDPAIRVTCHFDTESVLGTYVDRNRVICVQPYLKAEGYIRFQISVGTQRFKWRGKYFVETPAAATEKIFFTTDDVHKKNPAEIRITWNQYNLTSNANANVMISLWGYRETKIEPQLEYIDVIEASYSNSGSYVITPSNYINRNNINRDMQFGFLQINLTQPDQYSGLAISPVLWSRPIPLAWYMAPQWERQHGKRWARALCDNWIRADRFLRNFAADLPLCPCTLDQAVLDKGRFRPDRECDKDSNPSCLRHRGAIHCVVSGTPVAQGAEQQCCYDRYGFLMLTYDQMWGSRPRRVHNLGKMPWNEASKVPSLSMWFHDMRPFYSCCYWQEEQAVGCETYRFERRPSQDCVAYQAPGIAGVFGDPHFVTFDGTAYTFNGLGEFVLARSVDESNKFEVQGRFEQLPVNYYGEVKATQLTAVAMRGNTTTTIEVRLRPLHARWRYRLDVLADGRRVYFDRESLKFQHFDGVTVYTPTYLLNQSQVVVQFDAGIGVEVVENEGYMTGRVFLPWKFINKTAGLFGNWSFNKLDDFMLPNGQVAQLNLNDLRSIHTNFGIKWMLTDREVPGVGAALFKREFGRMSGYYANATFQPNYVLDPADFLPANRSYDLERAEELCGECMQCQYDYAMTLNRDLAHFTKNYYDTIVNMQAENAVRVVSCGVLQTPRFGRKLSFDFMPGAKVSFECNEGFILIGDQRRECLSNGLWNIPEYGYTECLREVYYTRRVAFIAIGIIFLVICPLMLCIVCGVYRYRQKQLKEDPQWQMPMLPRSRASSARNLRTLNYDDDSDTDASTLKKSRSYDKVYRTNEPLPGKPQIDFPAKKWDLDENDEDVTSSEGEKPKQLGRRSLHSASGTELDQHGSPVDGDHPDEDDDFDEADVHTGTTHPVGYHQPLSPEEADQLHRQQYSPTFSGLDSRTSGASSINYTPQAATQNRFGGVPVLPSNTQYYSRPPSSVNTVPLRTAPTPLTQDTGLPSPPLATSPTPSVQKSTEV", "sequence_length": 1454, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3d8cb2e40e44271fa6ed2dc4a9d0c061a69104508fc78d2adb239c21387159de", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q0KHY3.json", "taxon_id": "7227", "uniprot_accession": "Q0KHY3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/g2f-pf07474.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07474", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/g2f-pf07474.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nido-pf06119.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06119", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nido-pf06119.yaml" } ], "pfam_ids": [ "PF00058", "PF00086", "PF06119", "PF07474", "PF07645", "PF12662", "PF12947" ], "protein_name": "Nidogen-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGDRVAGRPVLSSLPVLLLLPLLMLRAAALHPDELFPHGESWGDQLLQEGDDESSAVVKLANPLHFYEARFSNLYVGTNGIISTQDFPRETQYVDYDFPTDFPAIAPFLADIDTSHGRGRVLYREDTSPAVLGLAARYVRAGFPRSARFTPTHAFLATWEQVGAYEEVKRGALPSGELNTFQAVLASDGSDSYALFLYPANGLQFLGTRPKESYNVQLQLPARVGFCRGEADDLKSEGPYFSLTSTEQSVKNLYQLSNLGIPGVWAFHIGSTSPLDNVRPAAVGDLSAAHSSVPLGRSFSHATALESDYNEDNLDYYDVNEEEAEYLPGEPEEALNGHSSIDVSFQSKVDTKPLEESSTLDPHTKEGTSLGEVGGPDLKGQVEPWDERETRSPAPPEVDRDSLAPSWETPPPYPENGSIQPYPDGGPVPSEMDVPPAHPEEEIVLRSYPASGHTTPLSRGTYEVGLEDNIGSNTEVFTYNAANKETCEHNHRQCSRHAFCTDYATGFCCHCQSKFYGNGKHCLPEGAPHRVNGKVSGHLHVGHTPVHFTDVDLHAYIVGNDGRAYTAISHIPQPAAQALLPLTPIGGLFGWLFALEKPGSENGFSLAGAAFTHDMEVTFYPGEETVRITQTAEGLDPENYLSIKTNIQGQVPYVSANFTAHISPYKELYHYSDSTVTSTSSRDYSLTFGAINQTWSYRIHQNITYQVCRHAPRHPSFPTTQQLNVDRVFALYNDEERVLRFAVTNQIGPVKEDSDPTPGNPCYDGSHMCDTTARCHPGTGVDYTCECASGYQGDGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCILITPPANPCEDGSHTCAPAGQARCVHHGGSTFSCACLPGYAGDGHQCTDVDECSENRCHPAATCYNTPGSFSCRCQPGYYGDGFQCIPDSTSSLTPCEQQQRHAQAQYAYPGARFHIPQCDEQGNFLPLQCHGSTGFCWCVDPDGHEVPGTQTPPGSTPPHCGPSPEPTQRPPTICERWRENLLEHYGGTPRDDQYVPQCDDLGHFIPLQCHGKSDFCWCVDKDGREVQGTRSQPGTTPACIPTVAPPMVRPTPRPDVTPPSVGTFLLYTQGQQIGYLPLNGTRLQKDAAKTLLSLHGSIIVGIDYDCRERMVYWTDVAGRTISRAGLELGAEPETIVNSGLISPEGLAIDHIRRTMYWTDSVLDKIESALLDGSERKVLFYTDLVNPRAIAVDPIRGNLYWTDWNREAPKIETSSLDGENRRILINTDIGLPNGLTFDPFSKLLCWADAGTKKLECTLPDGTGRRVIQNNLKYPFSIVSYADHFYHTDWRRDGVVSVNKHSGQFTDEYLPEQRSHLYGITAVYPYCPTGRK", "sequence_length": 1375, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4312825649ed9788fee8d52b6ad044c32c006bb0e1301b9db92fab743def7e90", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q14112.json", "taxon_id": "9606", "uniprot_accession": "Q14112", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/amop-domain-ipr005533.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005533", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/amop-domain-ipr005533.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7658-ipr056075.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056075", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7658-ipr056075.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f54d1-6-like-c-terminal-sushi-like-domain-ipr057017.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057017", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f54d1-6-like-c-terminal-sushi-like-domain-ipr057017.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f54d1-6-like-ig-like-domain-ipr057018.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057018", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f54d1-6-like-ig-like-domain-ipr057018.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f54d1-6-like-second-ig-like-domain-ipr057019.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057019", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f54d1-6-like-second-ig-like-domain-ipr057019.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7658-pf24678.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24678", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7658-pf24678.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/f54d1-6-c-pf24469.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/f54d1-6-c-pf24469.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-f54d1-6-2-pf24464.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24464", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-f54d1-6-2-pf24464.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-f54d1-6-pf24462.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24462", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-f54d1-6-pf24462.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/amop.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50856", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/amop.yaml" } ], "pfam_ids": [ "PF03782", "PF06119", "PF24462", "PF24464", "PF24469", "PF24678" ], "protein_name": "Uncharacterized protein F54D1.6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSSVRLAFLATLLLLLPLEAQIQQANSANVNQNVGQQDTGTLFTGTGTNLYYGVNLVPFGPEVGDQEVNPGLLTAGQTIDLHMYFPFYGGLYNYSTLSVNGYIGFATVLDQGPTLNVGPDMTDWPRHEDPAMIAPYLCKQQIPQNLNPGMRSGVFYRLMMRQSLFGRQTGSNMNMGQATYQSSFFGQSASKACPGTPDSYVRCDSQADYFLEEMQRWLIEGVAGAAAFRADAALVVTWYNTASAISGRSDIDSGQLATYQAIWLTDRTARLSYVILNYDRLGFDAADFRQNSRSGRCQALFNGGNHTGLVPVDPTQDFKNTPKVLAQRSGVPQMVRGRYMFRVDDVVRPAGCSNKTGGTYPMLIYPNIVNMLGEMTVDVNAICLDKSQTYILMIEQRQTATCTVLTSAIARCNLPKIFDWGTKTVYFQPQSGGANDEKAFVGYIYFVPPTLDPMRLDIGNVYDWFKNPLPYTTMPLVWYPRNFTNPEMTQHMDQVRMNDDTLYSTQLGLYVIAYREYKDDTIKKFRPEHRVICRLATYSNRNTYEYRWKPQEERINLYQVEQWYMNDWERQNDLYHYRFGYLKLAPLKTNQEQNPQQLLSGLVSSPISLHFLWTSNNPQFATTTYSQQDESARTEYVKKKSLEMCHDWYDEDGAQWNFIRDTETNSSCPCIERQAIADIGRFMPHPRCSQAFRDITCTTSIGSRNCYMSSQNVMTTYAGDGRQYNENLARFPTHYGQVCCYDDQGHLMQTSYQPVIKVTPEVPYNPGFPMRAYEFGTAPYMGQYEVPGLSAFHNDYMPYFLCCKFADFRCQMFYWRRPSSGCQEYQPPAYGEVMGAGTFNTIDNDKFIFNEPGVYNGLYIPHTLSTPEVKVQIRMERYPNRRVDFSLLGRYMAQQDLVQPTNATVVTGVVLEATGTDRVHVVARKDTRRFRYRTSIIVGNILRYFDTMRIQRFKGVMIYVNNVERGQPEIYVVLEEAQIGIRVRESYAIDIDRLSEYQESMGILNIAVSVPPQYGVRPDGDKTREQEIRQRYNLPRVSGVFRPFPDQSSGSYLNTLTLNDVNSETYRQQIINMYRVQGSGEPGSDQNINNQGNNYGMPTENMFTTSRDEDKKFEVFPEAQMKSGPIFKTSPKYETGAYRFYPMTGQVLNQRLQTCRDMQQNTNINMQPLQSQLTGEYGQTQCPDNPSSIIQDCGDSVPCLYDYYNFNAKLLGLNVKNEWNTFTSDRFDASRQYNSCGVINIEYPEYLMKTSSMSSAYLQGDVARFECFQSHWIYGVHEYKCGIVVDRNQRNIIDPRDYRFEWNKGEQPWCRSREKQNFLTWLAIIGGIFGVLVFVILIFLCCWIVKQKKKGEAAERRGYDMASRSSMTGSRGGKKYPIHESEPLNEKRFDADTYRDDDFYPPAREEQYAARNEDLHGLKTSV", "sequence_length": 1423, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "06a534c12b28b532032a2f9fa3a031364b6c06eb391a1fc122360ad86c91053c", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q20762.json", "taxon_id": "6239", "uniprot_accession": "Q20762", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/amop-domain-ipr005533.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005533", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/amop-domain-ipr005533.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7658-ipr056075.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056075", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7658-ipr056075.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f54d1-6-like-c-terminal-sushi-like-domain-ipr057017.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057017", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f54d1-6-like-c-terminal-sushi-like-domain-ipr057017.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f54d1-6-like-ig-like-domain-ipr057018.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057018", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f54d1-6-like-ig-like-domain-ipr057018.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f54d1-6-like-second-ig-like-domain-ipr057019.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057019", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f54d1-6-like-second-ig-like-domain-ipr057019.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7658-pf24678.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24678", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7658-pf24678.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/f54d1-6-c-pf24469.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/f54d1-6-c-pf24469.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-f54d1-6-2-pf24464.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24464", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-f54d1-6-2-pf24464.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-f54d1-6-pf24462.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24462", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-f54d1-6-pf24462.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/amop.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50856", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/amop.yaml" } ], "pfam_ids": [ "PF03782", "PF06119", "PF24462", "PF24464", "PF24469", "PF24678" ], "protein_name": "Uncharacterized protein R09E10.5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRGCRHHLAAVVLLIATFPPLAYNQNIGGINQNIGGTPQNPTINQVSPGQIFSGTGNNPFYGVNLVPFGPEAGDLMVNPSMLTSGMTIDLYMFFPYYGGLYNYTTISVNGYLGFATVLDQGPTINVGPETTDWPRQEDPAMIAPYLCKQQVPQQGNPARRAGVYYRLLLRQSLFGRESNSNLNLGGTLQQNAFFGQQASQACPGTADSYVRCDSNSDYFLDQMMIWVQEGVAGGAMFRADAAVVVTWYNTASAISGRSDIDAGQTGTYQVIWLTDSTARLSYVIINYDRLGFDAQDFRGNSRSGRCRAVFNGGNHTGTVEVDPTQPYKNTPKVLAQRSGVPHMVRGRYMFRVDDVVRPAGCSNKTGGTYPIMIYPNIVNMLGDMTVDVNACCLDRTQTYIMMIEEREVATCQVINPAIARCSLPRIYDWGTKTVYFQPESRGANDEKAFVGYIYFVPPTLDPMRLDIGNIYEWYKNPMTNYLMPITWYPRNFTNPDILTNGNNMGVRISDDSMYGVQLGLYIVGYREFKDDEIKKFRPEYRTLARITTYSNQNNANYRWMPQEEVINTNQVQQWYLTDWERMHTLYTYRVGFFKLAPINPNDANGTQLLPGLVSAPISLHWLWTPENQQFATLTLNQQDRDQRIEFVKEKSREMCHDWYDEDGALWNFIRDTETNTSCPCIETQALLDLGRFMPHPRCSQMFRDITCTTVIGSKNCYMSSSNIYSSYAGNGNTFNNMDTNRFMTHYGQVCCYDESGYLMQTPYQPVIKTQREYFYNPGYPLRAYEFGTAPYMGQFEVPGLSVFHNDYMPYFLCCKFADFRCQMFYWRRPSSACQQYQPPAIGHAQGAGVFQTIDNDKFIFNQPGVFNFLYIPQSVRTPEVRIQTRLERYPNRKVDFGLLGRYISQYELVQPTNATVITGIALEATGTERVIVMTRKDTRRFRYRTNIIVGNILRYFDTIRLQRFRGVLIYVNNVERGQPEIYVVLEEAQIGVKVTESYALDIDRLPNYQESMGMLDIQISVSPQYGVRPDGDKTQETQYRQMYNLPRVSGLIRPYPDQTSGSLNEGLTLNDVNSDSYRQQIINNYLVLGTGEPGTQQNQAGTLNQNMPQDNMFTTSRDEDKQFDVFPEASMRSEPVYKTAPIFDTGSYRFVPQTGAMILQLLNTCRDLQNNPNTDLQPYQSIATLSYGLQCPDDPGQVLTECGDSVACLYDYALLNSKVLGQEEQDAWNMFTTDRALAIRQYNSCGAINIEYPEYMMKTPALSSGYLQGDVARFECYQSHWVKGDHEYKCGIVVDYNRPNEYRFEWNKGNQPWCRSRIKENYFKWLAVIAGIVGIIIVILLIFLVFWCIKRKKLQESRNYSGTAAYSNNAFQNQTYETKPSRALSVGDLSTAPRTVAMPPPRGTTATPMTLEPRGFSPVPSDVRGSQGMLGLNTSV", "sequence_length": 1437, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bd80738f383e6f79517924e781c12c48bcec569f6fe205f849b6f5ae9a0869b1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q21874.json", "taxon_id": "6239", "uniprot_accession": "Q21874", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nido-pf06119.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06119", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nido-pf06119.yaml" } ], "pfam_ids": [ "PF00094", "PF06119", "PF23263" ], "protein_name": "Mucin-4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRGPHWRVPWLCLSCLYSCLLLLPDALATTSTQTPMSLSSSTRTSQMSSQASTSSTSSDRRTSKTEQTSTRDTPSSITTVSQSHHTTSMETSKPQTTTTTEVTTSTPSASSRDQIQTETSSQRTISPDGTTTSHAPSISSSAPSTTHMLTTTSSTESTSVDSGHTTAITTQGLTPATAQVSLTPSSQNMSTVSTPITSTLTQRQHTGSKQTSSKSQVNIVTSTLSTSTSDSTPAQTMSQVTSSSDKRTKPSTSGVSSTSLTTTEVLTQTSSTDSAPGNTTLRITQNSTTHTTKVSTTSTPQKLSPVSTLINSSQKMSTLPQNQHTESMDTSRQPQTTTTIEVTTSTPSASSLHQIQTETNSPKTISPGETTTSHAPNMRSSPPKTSQILTTMPSTKSTSVDTKQTKAITTKVSTPDTTQVSMTPSSQKLPTHSTSTQELTSSYSQHIQSKGTSSKSQTTTNTKVNTSTPSASSRDKIQTETSSQRTNSPGEKRTSHAPSMSSSAPSTTHMLSTTSSNQSTSVDTGQTTSVTAQGSTPAITQTSLTPSSQNTSTVSTPITSTHKLSTLSQSQHTGSKGTSSNPQTTTTTEVTTSTPSATTHDQIQTETSSQNTISPGETTTSYAPIMSSSAPSTTHMLSTTSSTQSTSVDTRHTTTLTNQGSTPATTQVSPSSQNMSTVSAPITSTQILSTFPQSQHTGSKGTSSNPQTTTTPVVTTSNPSATSRDQIQTETSSQRTISPGETTTSYASIMSSSAPSTTHMLTTTSSTQSTSVDTRHTIAVRTQGSTPATTQVSPSSQNMSTVSTPITSTQILSTLPQSQHTGSKGTSSNPQTTTSPVVTTSTPSGTSGDQIQTETSSQRTISPGKTTTSHALNINSSAPSTTHMLSTTSSTQSTSGDTRHTTAGRTQGSTPATTQVSPSSQNMSTVSAPITSIQMLSTLPQSQHTESKSTSTNPQTTTTPEVTTSNPSATSHDQIETETSSQRTISPGETTTSYAPIMSSSAPSTTHMLSTTSSTQSTSVDTRNTTTLTTQGSTPATTQVSPSSKNMSTVSTPITSTHKLSTLPQSQHTGSNGTSSSSSTPATHRSHLHPNMSTVSTPITTTHKLSTLSQSQHTGSKGTSSNPQTTTTPVMTTSTPSATTHDQIQTETSSQRTISHGETTTSYAPIMSSSAPSTTHMLSTASSTQITSVDTRHTTAITTQGSTPATTQVSPSSQNMSTVSAPITSIQILSTLPQSQHTGSKGTSTNPQTTTTPEVTTSTPSATSRDQIQTETSSQRTISPGETTTSHAPIMSSSAPSTTHMLSTTSSTQSTSVDTRHTTAGRTQGSTPATTQVSPSSQNMTTTSHALMSSSAPSTTHMLSTTSSTQSTSVDTRHTTTVTTQGSTPATTQVLPSSQNMSTVSAPITSTQILSTLPQSQHTGSKGTSTNPQTTTNAEVTTSTPSATSHDQIETETSSQRTISPGETTTSHAPNMSSSAPSTTHMLSSTSSTQITSVDTGHTSAGRTQGSTPATTQVSPSSQNMSTVSAPITSTHILSTLPKSQHTGSKGTSSNPQTTITPVVTTSTPSASSRDQIQTETSFQRTISPGETTTSHAPSMSSSAPSSTHMLSTASSTQITSVDTRHTTAITTQGSTPATTQVSPSSQNMSTVSAPITSIQMLSTLPQSQHTESKSTSTNPQTTTTPRVTTSTPSASSRDQIQTETSSQRTISPGKTTTSHVPNMNSSAPSTTHILSTTSSIQSTSGDTRHTTAVRTQGSTPATTQVSLAPSSQNMSTLSAPITSPQHFSTLPQNQHTGSMGTSSNPQSTTIPEVTTSTLSASSRDQVQTETSSQRTISPGETTTSHASSLSSSAPSSTHMLSTASSTEITSGDTRHTTAIVTQGSTPATTQTTLTPSSQNMSTVSTPITSTHKLSPLPQSQHTENMGTSSNPQTTTTPEVTTSTPSATSYDQIQTETSFQRTISPGETTTSHAPSMSNSAPSSTHKLSTASSTEITSVDTRHTIAITTQGSTLATTQTSLTPSSQNMSTVSAPITSSQILSTLRQSQHTGSKGTSSNHQTTTTPVVTTSTSSATSRDQIQTETSSLRTISPDGTTTSHASSMSSSSPNTTHLLITTSSTESTSVDTGYSTVITTHGSTLATTQVSLTPSSQNMSTVSMPSTSSQELTSLPQRQHTGNMETSSQPQNITPTVVTTSTLLSFSRGSTELQTMSWGTSSSGTINTLSTPVRNTSPASTSGILTSTLTTSGNTGYTGVTRSLGVITSRVTSTSLPGKSTVVHSTPAQPLSAHSQSHQTYGTGTPSMSQTSILPDMTSEKRVASSPGPTVTESFSHVSSSSGLTTKTDNDRNTAVSATSSTLTSPSPTTASRSTVPLPSLLPDQGISLFPYGSEVGDQNLFARTVDFNSPIFKILIGFPLGSSLRDSFYVTDNGQIIFPESDYDVFSYPNPPQRGFTGRERVAMVAPFWADADFSSSRGAIFYQEYVTFYNEHHQLIREVETLINDFTSSWGYRAKWTLKVTWVNVPAYTAQESFGTNTYQAILSTDGSRSYALFLYQNSGMRWDVTQEPYNRVLMGFSSGDGYFENSPLTFRPAMEKYRPDRFLNSKLGIRGLQVYRLHREERPNYRLKCLQWLESQPQQPSWGWSSVSCPCSWQQGQRDFRFRPINPGWWDRQLCSFSSGRGGVCCSYGAWGEFREGWRMHSPWQFDEEQEAQNWCCQWNDKPSFCVWYQLRRPRVSCAGYRPPRPAWTFGDPHITTLDNANFTFNGLGDFLLVQAQDRNSSFLLEGRTAQTGTAKATNFIAFAAQYNTSSLKSPITVQWFLEPSDKIRVVYNNQTVAFNTRDTEVLPIFNTTGVLLTQNGSQVSANFDGTVTISVIARSNILHASSSLSEEYRNHTEGLLGVWNDNPEDDFRMPNGSTIPSNSSEETLFYYGMTWHVNGTGLLGIRADPLPTKFTPIFLSQLLNQSASGEDLASGCKGDRKCMFDILATGNRTIGQSTNSILNEFQHMNDTLNQYPPSINCSSKIQAYKGQTVTTEITSNSKDATLSLSKKCSGFKLFENGSLQWTPTSPEACTLEILARDVRTNLSWVLQPKTVACFCSKEEQCLYNETSKEGNSSLEVTSCKCDGDTFGRLCERSKDPCDEPCFPNVNCIPGKGCEACPPNTTGDGRHCAALEDSCPNRSCPMNYCYNNGHCDISEAPGCQPTCTCPPAFTDNRCFLAGNSFTPTISMELPLRTIVLSLREDENASAADVNASVANILENLDMRAFFSNSLVELIRTSPGAQPSSKSIHHWKVTSHFKYRPRGPLIHYLNNQLIGAVMEAFLLQARQERQKRSGEARKDVHFFPISRADVQDQMALNLSMLEEYFTCDGYKGYHLVYSPQDGVTCVSPCSEGYCHNGGQCKHLPDGPQCSCASFTIYSSSGEHCEHLSVKLGAFYGILFGTLGALLLLGILAFMIFHFCGCSKNKFSYPLDSEL", "sequence_length": 3470, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9d9a0753654b6af56c28f3ce67a3c1374309e47fef89b42e78f6c11d3cbc3ad4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8JZM8.json", "taxon_id": "10090", "uniprot_accession": "Q8JZM8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c8-3-muc4-pf23263.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23263", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c8-3-muc4-pf23263.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nido-pf06119.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06119", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nido-pf06119.yaml" } ], "pfam_ids": [ "PF00094", "PF06119", "PF23263" ], "protein_name": "Mucin-4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKGARWRRVPWVSLSCLCLCLLPHVVPGTTEDTLITGSKTAAPVTSTGSTTATLEGQSTAASSRTSNQDISASSQNHQTKSTETTSKAQTDTLTQMMTSTLFSSPSVHNVMETAPPDEMTTSFPSSVTNTLMMTSKTITMTTSTDSTLGNTEETSTAGTESSTPVTSAVSITAGQEGQSRTTSWRTSIQDTSASSQNHWTRSTQTTRESQTSTLTHRTTSTPSFSPSVHNVTGTVSQKTSPSGETATSSLCSVTNTSMMTSEKITVTTSTGSTLGNPGETSSVPVTGSLMPVTSAALVTFDPEGQSPATFSRTSTQDTTAFSKNHQTQSVETTRVSQINTLNTLTPVTTSTVLSSPSGFNPSGTVSQETFPSGETTTSSPSSVSNTFLVTSKVFRMPTSRDSTLGNTEETSLSVSGTISAITSKVSTIWWSDTLSTALSPSSLPPKISTAFHTQQSEGAETTGRPHERSSFSPGVSQEIFTLHETTTWPSSFSSKGHTTWSQTELPSTSTGAATRLVTGNPSTGTAGTIPRVPSKVSAIGEPGEPTTYSSHSTTLPKTTGAGAQTQWTQETGTTGEALLSSPSYSVTQMIKTATSPSSSPMLDRHTSQQITTAPSTNHSTIHSTSTSPQESPAVSQRGHTQAPQTTQESQTTRSVSPMTDTKTVTTPGSSFTASGHSPSEIVPQDAPTISAATTFAPAPTGDGHTTQAPTTALQAAPSSHDATLGPSGGTSLSKTGALTLANSVVSTPGGPEGQWTSASASTSPDTAAAMTHTHQAESTEASGQTQTSEPASSGSRTTSAGTATPSSSGASGTTPSGSEGISTSGETTRFSSNPSRDSHTTQSTTELLSASASHGAIPVSTGMASSIVPGTFHPTLSEASTAGRPTGQSSPTSPSASPQETAAISRMAQTQRTRTSRGSDTISLASQATDTFSTVPPTPPSITSTGLTSPQTETHTLSPSGSGKTFTTALISNATPLPVTYASSASTGHTTPLHVTDASSVSTGHATPLPVTSPSSVSTGHTTPLPVTDTSSESTGHVTPLPVTSFSSASTGDSTPLPVTDTSSASTGHVTPLPVTSLSSASTGDTTPLPVTDTSSASTGHATSLPVTDTSSVSTGHTTPLPVTDTSSASTGHATSLPVTDTSSVSTGHTTPLHVTDASSASTGQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHATPLLVTDTSSASTGHATPLPVTDASSVSTDHATSLPVTIPSAASTGHTTPLPVTDTSSASTGQATSLLVTDTSSVSTGDTTPLPVTSTSSASTGHVTPLHVTSPSSASTGHATPLPVTSLSSASTGDTMPLPVTSPSSASTGDTTPLPVTDASSVSTGHTTPLHVTDASSASTGQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHATPLLVTDTSSASTGHATPLPVTDASSVSTDHATSLPVTIPSAASTGHTTPLPVTDTSSASTGQATSLLVTDTSSVSTGDTTPLPVTSTSSASTGHVTPLHVTSPSSASTGHATPLPVTSLSSASTGDTMPLPVTSPSSASTGDTTPLPVTDASSVSTGHTTPLPVTSPSSASTGHTTPLPVTDTSSASKGDTTPLPVTSPSSASTGHTTPLPVTDTSSASTGDTTPLPVTNASSLSTGHATPLHVTSPSSASTGHATPLPVTSTSSASTGHATPLPVTGLSSATTDDTTRLPVTDVSSASTGQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHASPLLVTDASSASTGQATPLPVTDTSSVSTAHATPLPVTGLSSASTDDTTRLPVTDVSSASTGQAIPLPVTSPSSASTGDTTPLPVTDASSASTGDTTSLPVTIPSSASSGHTTSLPVTDASSVSTGHATSLLVTDASSVSTGDTTPLPVTDTNSASTGDTTPLHVTDASSVSTGHATSLPVTSLSSASTGDTTPLPVTSPSSASSGHTTPLPVTDASSVPTGHATSLPVTDASSVSTGHATPLPVTDASSVSTGHATPLPVTDTSSVSTGQATPLPVTSLSSASTGDTTPLPVTDTSSASTGQDTPLPVTSLSSVSTGDTTPLPVTNPSSASTGHATPLLVTDASSISTGHATSLLVTDASSVSTGHATALHDTDASSLSTGDTTPLPVTSPSSTSTGDTTPLPVTETSSVSTGHATSLPVTDTSSASTGHATSLPVTDTSSASTGHATPLPVTDTSSASTGQATPLPVTSPSSASTGHAIPLLVTDTSSASTGQATPLPVTSLSSASTGDTTPLPVTDASSVSTGHATSLPVTSLSSVSTGDTTPLPVTSPSSASTGHATPLHVTDASSASTGHATPLPVTSLSSASTGDTTPLPVTSPSSASTGHATPLHVTDASSVSTGDTTPLPVTSSSSASSGHTTPLPVTDASSASTGDTTPLPVTDTSSASTGHATHLPVTGLSSASTGDTTRLPVTNVSSASTGHATPLPVTSTSSASTGDTTPLPGTDTSSVSTGHTTPLLVTDASSVSTGDTTRLPVTSPSSASTGHTTPLPVTDTPSASTGDTTPLPVTNASSLSTRHATSLHVTSPSSASTGHATSLPVTDTSAASTGHATPLPVTSTSSASTGDTTPLPVTDTYSASTGQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHATPLLVTDASSASTGQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHATSLPVTDTSSASTGDTTSLPVTDTSSAYTGDTTSLPVTDTSSSSTGDTTPLLVTETSSVSTGDTTPLPVTDTSSASTGHATPLPVTNTSSVSTGHATPLHVTSPSSASTGHTTPLPVTDASSVSTGHATSLPVTDASSVFTGHATSLPVTIPSSASSGHTTPLPVTDASSVSTGHATSLPVTDASSVSTGHATPLPVTDASSVSTGHATPLPLTSLSSVSTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTDTSSASTGHATSLPVTDTSSASTGHATPLPDTDTSSASTGHATLLPVTDTSSASIGHATSLPVTDTSSISTGHATPLHVTSPSSASTGHATPLPVTDTSSASTGHANPLHVTSPSSASTGHATPLPVTDTSSASTGHATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHTTPLPVTDTSSASTGQATALPVTSTSSASTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHATPLLVTDASSASTGQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHATSLPVTDTSSASTGDTTSLPVTDTSSAYTGDTTSLPVTDTSSSSTGDTTPLLVTETSSVSTGHATPLLVTDASSASTGHATPLHVTSPSSASTGDTTPVPVTDTSSVSTGHATPLPVTGLSSASTGDTTRLPVTDISSASTGQATPLPVTNTSSVSTGDTMPLPVTSPSSASTGHATPLPVTSTSSASTGHATPVPVTSTSSASTGHTTPLPVTDTSSASTGDTTPLPVTSPSSASTGHTTPLHVTIPSSASTGDTSTLPVTGASSASTGHATPLPVTDTSSVSTGHATPLPVTSLSSVSTGDTTPLPVTDASSASTGQATPLPVTSLSSVSTGDTTPLLVTDASSVSTGHATPLPVTDTSSASTGDTTRLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLLVTDASSVSTGHATPLPVTDTSSASTGDTTRLPVTDTSSASTGQATPLPVTIPSSSSSGHTTPLPVTSTSSVSTGHVTPLHVTSPSSASTGHVTPLPVTSTSSASTGHATPLLVTDASSVSTGHATPLPVTDASSASTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTDASSASTGHATPLPVTIPSSVSTGDTMPLPVTSPSSASTGHATPLPVTGLSSASTGDTTPLPVTDTSSASTRHATPLPVTDTSSASTDDTTRLPVTDVSSASTGHATPLPVTSTSSASTGDTTPLPVTDTSSVSTGHATSLPVTSRSSASTGHATPLPVTDTSSVSTGHATPLPVTSTSSVSTGHATPLPVTSPSSASTGHATPVPVTSTSSASTGDTTPLPVTNASSLSTGHATPLHVTSPSSASRGDTSTLPVTDASSASTGHATPLPLTSLSSVSTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTIPSSASSGHTTSLPVTDASSVSTGHGTPLPVTSTSSASTGDTTPLPVTDTSSASTGHATPLPVTDTSSASTGHATPLPVTSLSSVSTGHATPLAVSSATSASTVSSDSPLKMETPGMTTPSLKTDGGRRTATSPPPTTSQTIISTIPSTAMHTRSTAAPIPILPERGVSLFPYGAGAGDLEFVRRTVDFTSPLFKPATGFPLGSSLRDSLYFTDNGQIIFPESDYQIFSYPNPLPTGFTGRDPVALVAPFWDDADFSTGRGTTFYQEYETFYGEHSLLVQQAESWIRKMTNNGGYKARWALKVTWVNAHAYPAQWTLGSNTYQAILSTDGSRSYALFLYQSGGMQWDVAQRSGNPVLMGFSSGDGYFENSPLMSQPVWERYRPDRFLNSNSGLQGLQFYRLHREERPNYRLECLQWLKSQPRWPSWGWNQVSCPCSWQQGRRDLRFQPVSIGRWGLGSRQLCSFTSWRGGVCCSYGPWGEFREGWHVQRPWQLAQELEPQSWCCRWNDKPYLCALYQQRRPHVGCATYRPPQPAWMFGDPHITTLDGVSYTFNGLGDFLLVGAQDGNSSFLLQGRTAQTGSAQATNFIAFAAQYRSSSLGPVTVQWLLEPHDAIRVLLDNQTVTFQPDHEDGGGQETFNATGVLLSRNGSEVSASFDGWATVSVIALSNILHASASLPPEYQNRTEGLLGVWNNNPEDDFRMPNGSTIPPGSPEEMLFHFGMTWQINGTGLLGKRNDQLPSNFTPVFYSQLQKNSSWAEHLISNCDGDSSCIYDTLALRNASIGLHTREVSKNYEQANATLNQYPPSINGGRVIEAYKGQTTLIQYTSNAEDANFTLRDSCTDLELFENGTLLWTPKSLEPFTLEILARSAKIGLASALQPRTVVCHCNAESQCLYNQTSRVGNSSLEVAGCKCDGGTFGRYCEGSEDACEEPCFPSVHCVPGKGCEACPPNLTGDGRHCAALGSSFLCQNQSCPVNYCYNQGHCYISQTLGCQPMCTCPPAFTDSRCFLAGNNFSPTVNLELPLRVIQLLLSEEENASMAEVNASVAYRLGTLDMRAFLRNSQVERIDSAAPASGSPIQHWMVISEFQYRPRGPVIDFLNNQLLAAVVEAFLYHVPRRSEEPRNDVVFQPISGEDVRDVTALNVSTLKAYFRCDGYKGYDLVYSPQSGFTCVSPCSRGYCDHGGQCQHLPSGPRCSCVSFSIYTAWGEHCEHLSMKLDAFFGIFFGALGGLLLLGVGTFVVLRFWGCSGARFSYFLNSAEALP", "sequence_length": 5412, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6ccb51ad9fc979b3a2469ec71f67acbefdafa86b0d28a70c3bd5b3a816953c32", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/Q99102.json", "taxon_id": "9606", "uniprot_accession": "Q99102", "uniprot_release": "2026_03" } ], "pfam_id": "PF06119", "short_name": "NIDO", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/collagen-trimer-pf20010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/collagen-trimer-pf20010.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf959-pf06121.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06121", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf959-pf06121.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/endostatin-pf06482.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06482", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/endostatin-pf06482.yaml" } ], "pfam_ids": [ "PF01391", "PF01392", "PF06121", "PF06482", "PF20010" ], "protein_name": "Collagen alpha-1(XVIII) chain", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPYPCGCHILLLLFCCLAAARANLLNLNWLWFNNEDTSHAATTIPEPQGPLPVQPTADTTTHVTPRNGSTEPATAPGSPEPPSELLEDGQDTPTSAESPDAPEENIAGVGAEILNVAKGIRSFVQLWNDTVPTESLARAETLVLETPVGPLALAGPSSTPQENGTTLWPSRGIPSSPGAHTTEAGTLPAPTPSPPSLGRPWAPLTGPSVPPPSSGRASLSSLLGGAPPWGSLQDPDSQGLSPAAAAPSQQLQRPDVRLRTPLLHPLVMGSLGKHAAPSAFSSGLPGALSQVAVTTLTRDSGAWVSHVANSVGPGLANNSALLGADPEAPAGRCLPLPPSLPVCGHLGISRFWLPNHLHHESGEQVRAGARAWGGLLQTHCHPFLAWFFCLLLVPPCGSVPPPAPPPCCQFCEALQDACWSRLGGGRLPVACASLPTQEDGYCVLIGPAAERISEEVGLLQLLGDPPPQQVTQTDDPDVGLAYVFGPDANSGQVARYHFPSLFFRDFSLLFHIRPATEGPGVLFAITDSAQAMVLLGVKLSGVQDGHQDISLLYTEPGAGQTHTAASFRLPAFVGQWTHLALSVAGGFVALYVDCEEFQRMPLARSSRGLELEPGAGLFVAQAGGADPDKFQGVIAELKVRRDPQVSPMHCLDEEGDDSDGASGDSGSGLGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMGASSGVRLWATRQAMLGQVHEVPEGWLIFVAEQEELYVRVQNGFRKVQLEARTPLPRGTDNEVAALQPPVVQLHDSNPYPRREHPHPTARPWRADDILASPPRLPEPQPYPGAPHHSSYVHLRPARPTSPPAHSHRDFQPVLHLVALNSPLSGGMRGIRGADFQCFQQARAVGLAGTFRAFLSSRLQDLYSIVRRADRAAVPIVNLKDELLFPSWEALFSGSEGPLKPGARIFSFDGKDVLRHPTWPQKSVWHGSDPNGRRLTESYCETWRTEAPSATGQASSLLGGRLLGQSAASCHHAYIVLCIENSFMTASK", "sequence_length": 1754, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ee04f52825fa08f3557f5d1fb09f935217ffa63e665d9b6c6bb7765f025ab2fe", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/P39060.json", "taxon_id": "9606", "uniprot_accession": "P39060", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf959-pf06121.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06121", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf959-pf06121.yaml" } ], "pfam_ids": [ "PF01391", "PF01392", "PF06121", "PF06482", "PF13385", "PF20010" ], "protein_name": "Collagen alpha-1(XVIII) chain", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPDPSRRLCLLLLLLLSCRLVPASADGNSLSPLNPLVWLWPPKTSDSLEGPVSKPQNSSPVQSTENPTTHVVPQDGLTEQQTTPASSELPPEEEEEEDQKAGQGGSPATPAVPIPLVAPAASPDMKEENVAGVGAKILNVAQGIRSFVQLWDEDSTIGHSAGTEVPDSSIPTVLPSPAELSSAPQGSKTTLWLSSAIPSSPDAQTTEAGTLAVPTQLPPFQSNLQAPLGRPSAPPDFPGRAFLSSSTDQGSSWGNQEPPRQPQHLEGKGFLPMTARSSQQHRHSDVHSDIHGHVPLLPLVTGPLVTASLSVHGLLSVPSSDPSGQLSQVAALPGFPGTWVSHVAPSSGTGLSNDSALAGNGSLTSTSRCLPLPPTLTLCSRLGIGHFWLPNHLHHTDSVEVEATVQAWGRFLHTNCHPFLAWFFCLLLAPSCGPGPPPPLPPCRQFCEALEDECWNYLAGDRLPVVCASLPSQEDGYCVFIGPAAENVAEEVGLLQLLGDPLPEKISQIDDPHVGPAYIFGPDSNSGQVAQYHFPKLFFRDFSLLFHVRPATEAAGVLFAITDAAQVVVSLGVKLSEVRDGQQNISLLYTEPGASQTQTGASFRLPAFVGQWTHFALSVDGGSVALYVDCEEFQRVPFARASQGLELERGAGLFVGQAGTADPDKFQGMISELKVRKTPRVSPVHCLDEEDDDEDRASGDFGSGFEESSKSHKEDTSLLPGLPQPPPVTSPPLAGGSTTEDPRTEETEEDAAVDSIGAETLPGTGSSGAWDEAIQNPGRGLIKGGMKGQKGEPGAQGPPGPAGPQGPAGPVVQSPNSQPVPGAQGPPGPQGPPGKDGTPGRDGEPGDPGEDGRPGDTGPQGFPGTPGDVGPKGEKGDPGIGPRGPPGPPGPPGPSFRQDKLTFIDMEGSGFSGDIESLRGPRGFPGPPGPPGVPGLPGEPGRFGINGSYAPGPAGLPGVPGKEGPPGFPGPPGPPGPPGKEGPPGVAGQKGSVGDVGIPGPKGSKGDLGPIGMPGKSGLAGSPGPVGPPGPPGPPGPPGPGFAAGFDDMEGSGIPLWTTARSSDGLQGPPGSPGLKGDPGVAGLPGAKGEVGADGAQGIPGPPGREGAAGSPGPKGEKGMPGEKGNPGKDGVGRPGLPGPPGPPGPVIYVSSEDKAIVSTPGPEGKPGYAGFPGPAGPKGDLGSKGEQGLPGPKGEKGEPGTIFSPDGRALGHPQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGTNGLKGEKGEPGDASLGFSMRGLPGPPGPPGPPGPPGMPIYDSNAFVESGRPGLPGQQGVQGPSGPKGDKGEVGPPGPPGQFPIDLFHLEAEMKGDKGDRGDAGQKGERGEPGAPGGGFFSSSVPGPPGPPGYPGIPGPKGESIRGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTVSVPGPPGPPGPPGPPGAMGASAGQVRIWATYQTMLDKIREVPEGWLIFVAEREELYVRVRNGFRKVLLEARTALPRGTGNEVAALQPPLVQLHEGSPYTRREYSYSTARPWRADDILANPPRLPDRQPYPGVPHHHSSYVHLPPARPTLSLAHTHQDFQPVLHLVALNTPLSGGMRGIRGADFQCFQQARAVGLSGTFRAFLSSRLQDLYSIVRRADRGSVPIVNLKDEVLSPSWDSLFSGSQGQLQPGARIFSFDGRDVLRHPAWPQKSVWHGSDPSGRRLMESYCETWRTETTGATGQASSLLSGRLLEQKAASCHNSYIVLCIENSFMTSFSK", "sequence_length": 1774, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2d07687df10bb49a92bdfe927f368cda28241a7e2ce5396ec0a365f056ca1d03", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P39061.json", "taxon_id": "10090", "uniprot_accession": "P39061", "uniprot_release": "2026_03" } ], "pfam_id": "PF06121", "short_name": "DUF959", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06124", "short_name": "DUF960", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf961-pf06125.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06125", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf961-pf06125.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/ydcp-like-superfamily-ipr038620.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/ydcp-like-superfamily-ipr038620.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/conjugative-transposon-protein-duf961-2-40-50-390.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.40.50.390", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/conjugative-transposon-protein-duf961-2-40-50-390.yaml" } ], "pfam_ids": [ "PF06125" ], "protein_name": "Putative uncharacterized protein YdcP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLNFIVPDINMTFGDMKFMGLNRERYVYDRENNKRTDVLESRIYNIASAVQGGQIEVTIPEYAGAKEIPPFADIELKNPKISAMATSQRDSTYANVMWKLEADDIVVKGGSSVKPAAATGGNEKK", "sequence_length": 126, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6bc7656abbee23dddf1e4c21a12d72152e20ee956229bba06d1eb6e1cc0d4a5c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P96633.json", "taxon_id": "224308", "uniprot_accession": "P96633", "uniprot_release": "2026_03" } ], "pfam_id": "PF06125", "short_name": "DUF961", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/fatty-acid-alpha-dioxygenase-activity-go0102672.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0102672", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/fatty-acid-alpha-dioxygenase-activity-go0102672.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/sphingoid-catabolic-process-go0046521.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0046521", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/sphingoid-catabolic-process-go0046521.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mpo1-like-pf06127.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06127", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mpo1-like-pf06127.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P25338", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06127" ], "protein_name": "2-hydroxy-palmitic acid dioxygenase MPO1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f54773adeb844773f60e3508db03a476bf7caf1334c6f2f4da5a90740d528afa", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGEGLLDLRSQLGFYKFYHHNPKNVLIHSIFVPTILFSGSCMLHRVKIYQSISLTAVLSVLFSIFYCLLYLPTGLLAGVLLLLLNLALIDHRVDLTFKQELGLFTIGWIFQFVGHGVFEKRRPALIDNLVQSLVLAPYFIMFEFLFKLGFMPRLKATLEHDLEIKQRNLRMQRQ", "sequence_length": 174, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f54773adeb844773f60e3508db03a476bf7caf1334c6f2f4da5a90740d528afa", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P25338.json", "taxon_id": "559292", "uniprot_accession": "P25338", "uniprot_release": "2026_03" } ], "pfam_id": "PF06127", "short_name": "Mpo1-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf963-pf06131.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06131", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf963-pf06131.yaml" } ], "pfam_ids": [ "PF05727", "PF06131" ], "protein_name": "UPF0228 protein MA_3119", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVEMSNVRKEIVAFIVLLSLLLLWTLFTQAPINTSTPVNTSTPVNTSTPVNTSTPVNTSTPVSTSTIDPESQVAGMAIQFKNGTSESEVKSTLQNYNMTQNYRITFDANHYPEYYIMVNKENITDVKGKLEKEKTWTEPIPAIEKGNYYIITISERVIHNKNFIMMLSKYNLQLEKFVWCDIRFLYSDGPLTYWISKEDAIRLKNELEQNENIFTIRFDYLYPPYDPTT", "sequence_length": 229, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a92f3d819ec9588cbc0f41ee4dde4af838b8985155cc48debcf2627e96f33421", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TLB8.json", "taxon_id": "188937", "uniprot_accession": "Q8TLB8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf963-pf06131.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06131", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf963-pf06131.yaml" } ], "pfam_ids": [ "PF06131" ], "protein_name": "Uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"sequence_length": 3971, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "733c44aaef29ded40ea43948c257a8b2748a5571af0235f9474ca49ec254bf09", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96WV6.json", "taxon_id": "284812", "uniprot_accession": "Q96WV6", "uniprot_release": "2026_03" } ], "pfam_id": "PF06131", "short_name": "DUF963", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/com-ylbf-pf06133.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06133", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/com-ylbf-pf06133.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/yhea-ymca-like-domain-superfamily-ipr023378.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023378", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yhea-ymca-like-domain-superfamily-ipr023378.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/yhea-ymca-like-1-20-1500-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1500.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yhea-ymca-like-1-20-1500-10.yaml" } ], "pfam_ids": [ "PF06133" ], "protein_name": "UPF0342 protein YheA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVNFYDVAYDLENALRGSEEFTRLKNLYDEVNADESAKRMFENFRDVQLRLQQKQMAGEEITQEEVTQAQKTVALVQQHEKISQLMEAEQRMSMLIGELNKIIMKPLEELYGSVEG", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f71ebd2fc69bd38c508abfa17c64241122bb3da5d3a080f58fd1a11ac17a9f4f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O07542.json", "taxon_id": "224308", "uniprot_accession": "O07542", "uniprot_release": "2026_03" }, { "evidence_scope": 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"source_url": "https://rest.uniprot.org/uniprotkb/Q8GYT8.json", "taxon_id": "3702", "uniprot_accession": "Q8GYT8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/specification-of-plant-organ-axis-polarity-go0090708.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090708", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/specification-of-plant-organ-axis-polarity-go0090708.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": 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"registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSRVFRATPDNNYLVPRRSKDQQDTSPDRNRIWSEPRLKPVVNRKVPVVYYLCRNGQLDHPHFIEVTLSSHDGLYLKDVINRLNDLRGKGMASLYSWSSKRSYKNGFVWHDLSEDDFIFPVQGQEYVLKGSEVLDSCLISNPRSLLETSSFRDPRSLNPDKNSGDDIPAVINRRRNQSWSSIDLSEYKVYKATESSAESTQRLAADASTQTDDRRRRRRPAKEEIEEVKSPASYENQSTELSRDEISPPPSDSSPETLENLIKADGRLILRPSESSTDHRTVESLSSGRMRASAVLMQLISCGTMSFKECGPVLLKDQGLALNGRSGCTITRGAEDNGEERVDKELKSFGRVQLEDKEYFSGSLIETKKELVPALKRSSSYNADRCSRMGPTTEKDEEEAVRAKCIPRKPKPVAKRNNGGQQ", "sequence_length": 423, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5239d1d8473811b78c98095dee3a30acb4b6b59cceacb1d18f76cbdab295edf4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FJF5.json", "taxon_id": "3702", "uniprot_accession": "Q9FJF5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/specification-of-plant-organ-axis-polarity-go0090708.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090708", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/specification-of-plant-organ-axis-polarity-go0090708.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/soseki-dix-like-domain-ipr048351.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048351", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/soseki-dix-like-domain-ipr048351.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sok-pf06136.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06136", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sok-pf06136.yaml" } ], "pfam_ids": [ "PF06136" ], "protein_name": "Protein SOSEKI 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAVRCRRGRENNKSPERIIRSLNHHQHDEELEEEVKTKKPIFRRVQVVYYLTRNGHLEHPHFIEVISPVNQPLRLRDVMNRLTILRGKCMTSQYAWSCKRSYRNGFVWNDLAENDVIYPSDCAEYVLKGSEITDKFQEVHVNRPLSGSIQEAPKSRLLRSKLKPQNRTASFDDAELYVGEEEEEEDGEYELYEEKTSYTSSTTPQSRCSRGVSTETMESTEQKPNLTKTEQDLQVRSDSSDLTRSNPVVKPRRHEVSTRVEDGDPVEPGSGRGSMWLQMISCGHIATKYYAPSVMNPRQKEENLRKGVLCKNIVKKTVVDDEREMIRFMSENPRFGNPQAEEKEYFSGSIVESVSQERVTAEPSLRRSNSFNEERSKIVEMAKETKKKEERSMAKVKCIPRTCLMSSSKQIKK", "sequence_length": 414, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "08cf81ada51a31f95b9d55e38f0419f69b0cf020ba69928231d782dc45236080", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LX14.json", "taxon_id": "3702", "uniprot_accession": "Q9LX14", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/soseki-dix-like-domain-ipr048351.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048351", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/soseki-dix-like-domain-ipr048351.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sok-pf06136.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06136", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sok-pf06136.yaml" } ], "pfam_ids": [ "PF06136" ], "protein_name": "Protein SOSEKI 1", 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"organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/hnh-nucleases-hnh-endonuclease-signature-which-is-found-in-viral-proka-cd00085.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd00085", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/hnh-nucleases-hnh-endonuclease-signature-which-is-found-in-viral-proka-cd00085.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf968-ipr010373.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010373", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf968-ipr010373.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hnh-nuclease-ipr003615.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003615", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hnh-nuclease-ipr003615.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf968-pf06147.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf968-pf06147.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-30-40-190-3-30-40-190.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.40.190", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-30-40-190-3-30-40-190.yaml" } ], "pfam_ids": [ "PF06147" ], "protein_name": "Uncharacterized protein YdfU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRVLLRPVLVPELGLVVLKPGRESIQIFHNPRVLVEPEPKSMRNLPSGVVPAVRQPLAEDKTLLPFFSNERVIRAAGGVGALSDWLLRHVTSCQWPNGDYHHTETVIHRYGTGAMVLCWHCDNQLRDQTSESLELLAQQNLTAWVIDVIRHAISGTQERELSLAELSWWAVCNQVVDALPEAVSRRSLGLPAEKICSVYRESDIVPGELTATSILKQRTKNLAPLPYAHQQQKSPQEKTVVSITVDPESPESFMKLPKRRRWVKEKYTRWVKTQPCACCGMPADDPHHLIGHGQGGMGTKAHDLFVLPLCRKHHNELHTDTVAFEDKYGSQLELIFRFIDRALAIGVLA", "sequence_length": 349, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "41e2cf79bd4a6d9142b4e8cd8c8de4ac5ddc07431d9644d24287b37ffa2403a4", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P76162.json", "taxon_id": "83333", "uniprot_accession": "P76162", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage P1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf968-pf06147.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf968-pf06147.yaml" } ], "pfam_ids": [ "PF06147" ], "protein_name": "Uncharacterized 36.0 kDa protein in doc-Gp10 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPVPRELIEHMEDGLVVTEQTMATNEALQPFFNSDELFRRIGGIDALVAWLRRKEGQCQAADRSWCDNHIVHAERDNSAVLLCWHHDNHYRMRGFNELKETLHNNRVNWILDVARQEMGLSNSHDLSIQELCWWAFMRNMMHLMPEEVCRISINKMKATPQDSGPLKEADIRPYDDRATAYVQMMEERSAPMRAKVCPVDVDSDPGMAHFKIPKLQSLKLPEYMDFVASRPCCGCGAAGRGAHITPYIVRHSRLCAHDIYAIPLCQSCQRDIERDRYNWEKTHGRLAMHQRLFFDYALGVGVITSHSSSVR", "sequence_length": 312, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": 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"2488a57993628d8200bf7e429b1549733a10fd5659a88a7c607bbef16d61e66d", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGTESGSDPESSSNGWSRARGLVVKTLVLIGGALLIKRLTKSTTRRDHARVVSRSLTGEKFTREQASRDPDNYFNIRMLSCPAAEMVDGSEVLYLEQAFWRTPQKPFRQRLYMVKPCPKELKCDVEVSSYAIRDAEEYKNFCDRPKDQRPLPEEVIGDIGEHLTTIHLNCCDRGKRCLYEGSTSPGGFPNSWNGASYCTSDLAVLKNNEIHLWDRGFDENRNQVWGPKEGPYEFKPATSSSINENLSALNILYQSSIDKPIQGSLILQD", "sequence_length": 269, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2488a57993628d8200bf7e429b1549733a10fd5659a88a7c607bbef16d61e66d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FI46.json", "taxon_id": "3702", "uniprot_accession": "Q9FI46", "uniprot_release": "2026_03" } ], "pfam_id": "PF06206", "short_name": "CpeT", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1002-pf06207.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06207", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1002-pf06207.yaml" } ], "pfam_ids": [ "PF06207" ], "protein_name": "Uncharacterized protein YpuA", "registry_status": "NOT_IN_REGISTRY", 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"example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gaga-bind-pf06217.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gaga-bind-pf06217.yaml" } ], "pfam_ids": [ "PF06217" ], "protein_name": "Protein BASIC PENTACYSTEINE5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gaga-bind-pf06217.yaml" } ], "pfam_ids": [ "PF06217" ], "protein_name": "Protein BASIC PENTACYSTEINE6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDDGGHRENGRHKAAVQGQWLMQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVTAPAANMSACPPGCQISRGVKHLHHPHMHHHHQQHHIPQLTENAYETREMEPNDGLPTSPPAGSTLESAKPKRGKRVNPKATTQTAANKRGPKNQRKVKKESEDDLNKIMFVKTTHDYTDEDSSKHILIGSKSDWKSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK", "sequence_length": 342, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cdc1423bffe582e119f5ed552373aa88cbba92dfb5f296478622e689d1ecccc9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8L999.json", "taxon_id": "3702", "uniprot_accession": "Q8L999", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gaga-bind-pf06217.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gaga-bind-pf06217.yaml" } ], "pfam_ids": [ "PF06217" ], "protein_name": "Protein BASIC PENTACYSTEINE4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENGGQYDNARFKPDYFKGAQSMWNMIPQHQIKEQHNALVMNKKIMSILAERDAAVHERNQAVSAKKEAVAARDEALQQRDKALSERDKALIERDNAYAALQHHENSLNFALSGGKCVDGDDCFGIGEPHKLEVFPLSTIPPEVTNTKVVNKRKKENKQGLSKVKKVGEDLNRRVPAPGKKSRTDWDSQDVGLNLVTFDETTMPVPMCSCTGSTRQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRMGGRKMSGNVFSRLLSRLSAEGYDLSCPVDLKDYWARHGTNRYITIK", "sequence_length": 296, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "09c0325961ae7081c9d67355343fd04cd9fb83599a155ea4738f03f2853f1490", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8S8C6.json", "taxon_id": "3702", "uniprot_accession": "Q8S8C6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-response-to-salt-stress-go1901002.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1901002", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-response-to-salt-stress-go1901002.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-developmental-process-go0050793.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050793", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-developmental-process-go0050793.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-plant-type-cell-wall-organization-or-biogenesis-go0080157.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0080157", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-plant-type-cell-wall-organization-or-biogenesis-go0080157.yaml" } ], "pfam_ids": [ "PF06217" ], "protein_name": "Protein BASIC PENTACYSTEINE2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDDDGFRNWGYYEPAAATFKGNLGLQLMSTIDRNTKPFLPGRDPNLMMGPNGSYHHQEPPIHMSYNWINQQKDKFFNMLPVTTATPNYGNVLPETSSAPSMQMNLHHHLQTEENPVKLEEEIVVQTKKRKTNAKAGSTPKAKKPRKPKDENSNNNNNNNTNVTRVKPAKKSVDLVINGVSMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR", "sequence_length": 279, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9eae61a4bdc88860797cb80e96fdbd60bc6a8966fdcb0db0d110793203035b6e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LDE2.json", "taxon_id": "3702", "uniprot_accession": "Q9LDE2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-response-to-salt-stress-go1901002.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1901002", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-response-to-salt-stress-go1901002.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-developmental-process-go0050793.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050793", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-developmental-process-go0050793.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-plant-type-cell-wall-organization-or-biogenesis-go0080157.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0080157", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-plant-type-cell-wall-organization-or-biogenesis-go0080157.yaml" } ], "pfam_ids": [ "PF06217" ], "protein_name": "Protein BASIC PENTACYSTEINE1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDDDGFRNWGYYEPAAASSFKGNLGLQLMSTIDRNTKPFLPGRESNLMIGSNGSYHSREQDMNYSWINQPKDNKFFNMLPISTPSYSNVLSETSGSNSIQMIHQPVLNSSRFEENPIPPPAPCEEQTGKKRKMRGSIATPTVPKAKKMRKPKEERDVTNNNVQQQQQRVKPVKKSVDLVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISVYPLPMSTKRRGARISGRKMSQGAFKKVLEKLSTEGYSFGNAIDLKSHWARHGTNKFVTIR", "sequence_length": 283, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d9e64e6ee54a17ff3105246fa258dd5cc4d73b090eb159da7b8c033020041b3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SKD0.json", "taxon_id": "3702", "uniprot_accession": "Q9SKD0", "uniprot_release": "2026_03" } ], "pfam_id": "PF06217", "short_name": "GAGA_bind", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06219", "short_name": "DUF1005", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces sahachiroi", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/alkz-like-pf06224.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06224", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/alkz-like-pf06224.yaml" } ], "pfam_ids": [ "PF06224" ], "protein_name": "Interstrand DNA cross-link repair glycosylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKASWRQVFAWRMQRQFLEPRTQPSASDVVGRLCGVQAQVWSVAELNVALRQAAPDRESVNREVADLSLMKTWAMRGTLHLLRPSEAGPYLSLMANTGSWLKPSWTRASGVTPRQVDELTEEVAGILDGVVLTRDELVTRLVADKRFVSMEERLRSGWGSVLKPLAWRGVLCHGPNRGNKITFTLPASQFGADWGKMPEPDEAAPTVIKAYLGAYGPATIETFDRWLSLNSTSKPKLRKWFGDMGDELTEVDVEGRKAFVLTEHAEELAATAPCTGIRLLGGFDQYLLGPGTKDEVVLAPEHRSAVSRAAGWISPVVVKDGRVVGVWEIVDQELVVTPFPDTERLPVKAVEKEAAHVARASGVSRLPVRIV", "sequence_length": 371, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "32e8b0c3fb288eb670bfc6ea8c4579a692c401160aedaca06d54bb2fc5b9d2c8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B4XYC8.json", "taxon_id": "285525", "uniprot_accession": "B4XYC8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/alkz-like-pf06224.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06224", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/alkz-like-pf06224.yaml" } ], "pfam_ids": [ "PF06224" ], "protein_name": "Interstrand DNA cross-link repair glycosylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLPHLSLADARNLHLAAQGLLNKPRRRASLEDIPATISRMSLLQIDTINIVARSPYLVLFSRLGNYPAQWLDESLARGELMEYWAHEACFMPRSDFRLIRHRMLAPEKMGWKYKDAWMQEHEAEIAQLIQHIHDKGPVRSADFEHPRKGASGWWEWKPHKRHLEGLFTAGKVMVIERRNFQRVYDLTHRVMPDWDDERDLVSQTEAEIIMLDNSARSLGIFREQWLADYYRLKRPALAAWREARAEQQQIIAVHVEKLGNLWLHDDLLPLLERALAGKLTATHSAVLSPFDPVVWDRKRAEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQLVGRMDAKMHRQTGILEVISLWLQEGIKPTTTLQKGLRQAITDFANWQQATRVTLGCCPQGLFTDCRTGWEIDPVA", "sequence_length": 410, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "325059c787b62a189ccb1145826d82414d807d91b4d26a4899073d3d60bac8ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75843.json", "taxon_id": "83333", "uniprot_accession": "P75843", "uniprot_release": "2026_03" } ], "pfam_id": "PF06224", "short_name": "AlkZ-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Spirochaeta aurantia", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1007-pf06226.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06226", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1007-pf06226.yaml" } ], "pfam_ids": [ "PF06226" ], "protein_name": "Uncharacterized 15.5 kDa protein in trpE 3'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVMDHDINGNGKFDDKELPGLKKGYFDNLKSYQYFTHLRLGTKKLEVPSPTKFVASIADGRVTFRFFVPLGLRLDAKTPLAVAFYDDTFFTDMVFNKSGPVALKVTDGGKGSVALRASPSLSYYSGQVVPTYAFITWSPS", "sequence_length": 140, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4ae020a2cd8ad953a6a425f6c294da873c0b5e993959351d1fbfda6383c7653c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P22041.json", "taxon_id": "147", "uniprot_accession": "P22041", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1007-pf06226.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06226", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1007-pf06226.yaml" } ], "pfam_ids": [ "PF06226" ], "protein_name": "Uncharacterized protein HI_1249", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTYSLLLGLFISFGVLAHPHAFIDIQTTPIIENNQLTGFSMKWTLDEPSSSAVIYDMKQARTKAEKQKLLDDVMGNIVSEHYFSYLYDAQNNKIKYSPRPKNYGINVQGLQLQYYFDVPLAHPQKLEKNTFSLQTYDPTYYVAMTYASKSAVDFSALSKNCQGKLIEPNVDEKIQAYASSLDKSQKNEDDSLGVMFAQKIIIQCE", "sequence_length": 206, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1e4f205ed787267e98037b90f032136abc3e94be1ef46c2036502caadec6974d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44137.json", "taxon_id": "71421", "uniprot_accession": "P44137", "uniprot_release": "2026_03" } ], "pfam_id": "PF06226", "short_name": "DUF1007", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chux-hutx-pf06228.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chux-hutx-pf06228.yaml" } ], "pfam_ids": [ "PF06228" ], "protein_name": "Intracellular heme transport protein HutX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYSGAYSFVQISTAAYRISITRLEKTMESLQQQVAQLLEQQPTLLPAAMAEQLNVTEFDIVHALPEEMVAVVDGSHAQTILESLPEWGPVTTIMTIAGSIFEVKAPFPKGKVARGYYNLMGRDGELHGHLKLENISHVALVSKPFMGRESHYFGFFTAQGENAFKIYLGRDEKRELIPEQVARFKAMQQQHKQ", "sequence_length": 193, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "41e2090ac8e08a95cc1abb5ea49357513732eeec2ec5525314ac9606d3b7e3ea", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9KL40.json", "taxon_id": "243277", "uniprot_accession": "Q9KL40", "uniprot_release": "2026_03" } ], "pfam_id": "PF06228", "short_name": "ChuX_HutX", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06230", "short_name": "LpxI_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06231", "short_name": "DUF1010", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/slc52-ribofla-tr-pf06237.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/slc52-ribofla-tr-pf06237.yaml" } ], "pfam_ids": [ "PF06237" ], "protein_name": "Riboflavin transporter rft-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGCSAATFILVALFGSSSWMGTNSVWMQLPLLTSELPEQWNLPSYLAGVVQIACIVPLIYTILHKGVKSFTIPTAPLIIALLSLACCCQLGLSFFWSDYSEIFGAPRSWPLYSLLFGLAIVNAMSNVLFMPFMAQFHPAYLNAYFVGMGLSSLAPSLLSLAQGTSMFKCDEKGVAERFPPNFSVSIFFFVIFSFTCVALFAFIALYRSGAHTHFATPNKKEPNEGTPLKKDLNNTSSSRKGDDEDESPIEIHETGAPAIDAIVSELDVTFREELQKSFRDANYLERSAMINDDSEPHPVDYITGVKFTFLLFTTALVNAQMNGIITSVQSYAALPYSQATYHFAVTLSNVVSPLSSFLPFFISVRSIPVLAILTACSTAMTAFIVYLAALSPNLIFNSVTIGSALSIGGSLIAAGLHSYLRVVFASLLREGHQSESRLFWCGVFIQIGSFIGSAVMFPLVNIAHLFTSAPQCKSIS", "sequence_length": 476, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c8519464d00e5c2089beb9d4ae7fdbc507c9e707fe664ab545c3a4cd8ae36922", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/G4SDH4.json", "taxon_id": "6239", "uniprot_accession": "G4SDH4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/slc52-ribofla-tr-pf06237.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/slc52-ribofla-tr-pf06237.yaml" } ], "pfam_ids": [ "PF06237" ], "protein_name": "Riboflavin transporter rft-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTFLFTFCLVAIFGSSSWIGTNSVWMELSLLTAKLPEGWNLPSYLSAIVQIACLGPLIYSIIHKGIKMTIPTVPLIFIFMVLACICQLGLCFFWDDTGYIFGAIRSWPLYLLLFGLAIVDAISSVLFLPFMAQFHPSFLNAYFVGMGLSALIPSLLSLIQGTSNYWCDDNKTPHYYPPRFSVSMFFLINFFFTCAAVAAFLVLYKIGAHKNSSQVEPEPKHSIQIIQGDSTTDVNEVNTESSFQETSSIPDSSSATGARLAFLLLTTALVNAQMNGIVTSVQSYATLVYSQNTYHYAVTLSNVISPLASYLQFFVKIRSLPILAFLTLCSSLTTAVIIYLAALSPNWIFNSETAGTIISIASSLIAAGLHSYLRVMFAALLREGNQKESRLFWCGAFIQIGSFTGSAIMFPLVNVWKLFHSAPSCR", "sequence_length": 427, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b488807aae5d2487328f038f5c3747d81ecff136dbf75b1de0b0c8c278f20b8d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3LFN0.json", "taxon_id": "6239", "uniprot_accession": "Q3LFN0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/riboflavin-transmembrane-transporter-activity-go0032217.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/riboflavin-transmembrane-transporter-activity-go0032217.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/riboflavin-transport-go0032218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/riboflavin-transport-go0032218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/slc52-ribofla-tr-pf06237.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/slc52-ribofla-tr-pf06237.yaml" } ], "pfam_ids": [ "PF06237" ], "protein_name": "Solute carrier family 52, riboflavin transporter, member 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFLTHLLVCVFGMGSWVAINGLWVELPLLVTELPEAWYLPSYLTVVIQLANIGPLLVTLMHRFRPGCLSEVPVIFLILCVGTAACILLAFLWNVTSWIQGGQHSVAFIVLTFFLALVDCTSSVTFLPFMSQLPTYYLTTFFIGEGLSGLLPALVALVQGSGITTCVNVTETPGTTLNTMETPITQGNLSPSLPSPSWHQESRYLAPRFSPLLFFLLLSFLTGCCLVAFFLLQRQPWGRQGSIEDLLHSQVTLHSIRPRDTEDTSSLGAPVSSPGKGSVEASVASLRPAQLAFIYSVVAFVNALTNGVLPSVQTYSCLPYGPVAYHLSATLSSVASPLACFLPIFLPNRSLLFLGVLTVLGTGFGAYNMAMAAMSPCPVLQGHWGGEVLIVLSWVLFAACLSYVKVMLGVILRDRSRSALLWCGAAVQLGSLIGALLMFPLVNVLKLFSSADYCSLDCSV", "sequence_length": 460, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "802417114857be190810a5b8e74d558e7a2a555b7ccd64fb8746910bfb961e72", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D6X5.json", "taxon_id": "10090", "uniprot_accession": "Q9D6X5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/4-hydroxybutyrate-receptor-activity-go0062124.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0062124", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/4-hydroxybutyrate-receptor-activity-go0062124.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/slc52-ribofla-tr-pf06237.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/slc52-ribofla-tr-pf06237.yaml" } ], "pfam_ids": [ "PF06237" ], "protein_name": "Solute carrier family 52, riboflavin transporter, member 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAPPLGRLVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYLSVLVALGNLGLLLVTLWRRLARGKGEQVPIRVVQGLGIVGTGLLASLWNHVAPVAGKPYSVAFLTLAFVLALACCASNVTFLPFLSHLPPPFLRSFFLGQGLSALLPCVLALGQGVGRLECLHVPANRTTGPPIEVSPINFPERFSATTFFWVLTALLGTSAAAFQGLLLLLPSPTSEPTTGTGLRVETPGTEEEEEEEEASPLQEPPGQVAGIVSSPDPKAHQLFSSRSACLLGLLAITNALTNGVLPAVQSFSCLPYGRLAYHLAVVLGSCANPLACFLAMAVLCRSLAGLCGLSLLGMLLGSYLMTLAALSPCPPLVGTSAGVVLVVLSWVLCAGTFSYIKVAISSMLHSGGRPALLAAGVAIQVGSLLGAVAMFPPTSIYRVFRSGKDCVDQCGL", "sequence_length": 450, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1503831c0ad341bb0c941abeb2f878be89df0c7194a202a1af5a765b687d3911", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D8F3.json", "taxon_id": "10090", "uniprot_accession": "Q9D8F3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/4-hydroxybutyrate-receptor-activity-go0062124.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0062124", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/4-hydroxybutyrate-receptor-activity-go0062124.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/riboflavin-transmembrane-transporter-activity-go0032217.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/riboflavin-transmembrane-transporter-activity-go0032217.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/riboflavin-transport-go0032218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/riboflavin-transport-go0032218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/slc52-ribofla-tr-pf06237.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/slc52-ribofla-tr-pf06237.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9HAB3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06237" ], "protein_name": "Solute carrier family 52, riboflavin transporter, member 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "82d936031147881865c782b3d60d9c54f716df65ab6c079653b20aebb63e660d", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNLGLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFVLALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPINGTPGPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALAVLSPCPPLVGTSAGVVLVVLSWVLCLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGAVAMFPPTSIYHVFHSRKDCADPCDS", "sequence_length": 445, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "82d936031147881865c782b3d60d9c54f716df65ab6c079653b20aebb63e660d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HAB3.json", "taxon_id": "9606", "uniprot_accession": "Q9HAB3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/riboflavin-metabolic-process-go0006771.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/riboflavin-transport-go0032218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/riboflavin-transport-go0032218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/slc52-ribofla-tr-pf06237.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/slc52-ribofla-tr-pf06237.yaml" } ], "pfam_ids": [ "PF06237" ], "protein_name": "Solute carrier family 52, riboflavin transporter, member 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANIGPLLVTLLHHFRPSCLSEVPIIFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLTFFLALVDCTSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTEISDSVPSPVPTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMMACCLVAFFVLQRQPRCWEASVEDLLNDQVTLHSIRPREENDLGPAGTVDSSQGQGYLEEKAAPCCPAHLAFIYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVANPLASLVSMFLPNRSLLFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVLFSGCLSYVKVMLGVVLRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNLHCPA", "sequence_length": 469, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c1fabdb677873711ac7d012449e76108d80054df80e51a05c767c18d2d086861", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NQ40.json", "taxon_id": "9606", "uniprot_accession": "Q9NQ40", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/slc52-ribofla-tr-pf06237.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/slc52-ribofla-tr-pf06237.yaml" } ], "pfam_ids": [ "PF06237" ], "protein_name": "Solute carrier family 52, riboflavin transporter, member 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAPTLGRLVLTHLLVALFGMGSWAAVNGIWVELPVVVKDLPEGWSLPSYLSVVVALGNLGLLVVTLWRQLAPGKGEQVPIQVVQVLSVVGTALLAPLWHHVAPVAGQLHSVAFLTLALVLAMACCTSNVTFLPFLSHLPPPFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPTNGTSGPPLDFPERFPASTFFWALTALLVTSAAAFRGLLLLLPSLPSVTTGGSGPELQLGSPGAEEEEKEEEEALPLQEPPSQAAGTIPGPDPEAHQLFSAHGAFLLGLMAFTSAVTNGVLPSVQSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLVGLSLLGMLFGAYLMALAILSPCPPLVGTTAGVVLVVLSWVLCLCVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGAGAMFPPTSIYHVFQSRKDCVDPCGP", "sequence_length": 448, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c695eb576464cd490127dac99effe229b517e951dbaf4ed01be710723ba4e586", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NWF4.json", "taxon_id": "9606", "uniprot_accession": "Q9NWF4", "uniprot_release": "2026_03" } ], "pfam_id": "PF06237", "short_name": "SLC52_ribofla_tr", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lotus japonicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/castor-poll-mid-pf06241.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06241", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/castor-poll-mid-pf06241.yaml" } ], "pfam_ids": [ "PF06241", "PF22614" ], "protein_name": "Ion channel POLLUX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIPLPVAAANSNSNSNSNSNDEESPNLSTVIKPPLKKTKTLLPPPSSSSSNRPLHLRVSIDNNNNNNAPPPPADFSDHQWNYPSFLGTTTRKRRPSSVKPPSTSNLRFDTIPKTKTKTKTNTNTNTNTNTNTNTNTDLPPPPVPSSSPVARPQHHNHRSPPIFYLLIITCIIFVPYSSYLQYKLAKLEDHKLHLCRQSQIHFSSGHGNGKISIPIHDASFSYILSRKAALYIVLFTLILPFLLYKYLDYLPQIINFLRRTHNNKEDVPLKKRIAYMLDVFFSIYPYAKLLALLFATLFLIGFGGLALYAVTGGSLAEALWHSWTYVADSGNHAETQGTGQRVVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKCEVIERNHILILGWSDKLGSLLKQLAIANKSVGGGVIVVLAEKEKEEMEMDITKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFENAEFYIKRWPELDGLSFKDILISFPDAIPCGVKVAADGGKIVINPDDSYVMRDGDEVLVIAEDDDTYSPGSLPEVLKGFFPRIPDAPKYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMFNEVPEKEREKKLAAGGLDVFGLENIKLVHREGNAVIRRHLESLPLETFDSILILADESVEDSVAHSDSRSLATLLLIRDIQSRRLPYKDTKSTSLRLSGFSHNSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEQGNEMCIKPAEFYLFDQEELCFYDIMIRGRARQEIIIGYRLANQERAIINPSEKLVARKWSLGDVFVVIASGD", "sequence_length": 917, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "71dcca2b7efc27895a7955c1334f1fe1af9379d52f8c434bd7d52229ac74bfad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5H8A5.json", "taxon_id": "34305", "uniprot_accession": "Q5H8A5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lotus japonicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/castor-poll-mid-pf06241.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06241", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/castor-poll-mid-pf06241.yaml" } ], "pfam_ids": [ "PF06241" ], "protein_name": "Ion channel CASTOR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLDSEVSVSSSSGRDWFFPSPSFFRSSPSQYGRRFHTNSNTHSAPSSTYPSGIRHRRRVKFSRTPTTSSNEKPQISIVSDKPSAISKNNLNWLSQFGLQFALVTLTIVFLLLLLLRNTHLESQVNKLQGEILRLHACHQLDTLNVSSSTAHKSQDTHPCSCENFKRNLALFLSFMLLLIPLIIFKYIDYVSRSRLSENISEQVSLNKQIAYRVDVFLSVYPYAKPLVLLVATLLLIFLGGLTLFGVTTEDLGHCLWLSWTYVADSGNHASSEGIGPRLVAVSISFGGMLIFAMMLGLVSDAISEKFDSLRKGKSEVVEQNHTLILGWSDKLGSLLNQLAIANESLGGGTIAVMAERDKEDMELDIGKMEFDFKGTSVICRSGSPLILADLKKVSVSKARTIIVLAEDGNADQSDARALRTVLSLTGVKEGLRGHIVVEMSDLDNEVLVKLVGGDLVETVVAHDVIGRLMIQCARQPGLAQIWEDILGFENCEFYIKRWPQLDGMLFEDVLISFPAAIPCGIKVASYGGKIILNPDDSYVLQEGDEVLVIAEDDDTYAPAPLPMVRRGSLPKDFVYPKSPERILFCGWRRDMEDMITVLDASLAPDSELWMFNDVPEKEREKKLIDGGLDISRLENISLVNREGNAVIRRHLESLPLESFDSILILADESVEDSAIQADSRSLATLLLIRDIQARRLPYVAMASQTQGGNFSKGSWIGEMKQASDKTVIISEILDPRTKNLLSMSKISDYVLSNELVSMALAMVAEDRQINDVLEELFAEEGNEMHIRQADIYLREGEEMSFYEIMLRARQRREILIGYRLANAERAVINPPAKTGRRKWSLKDVFVVITEKE", "sequence_length": 853, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "df67e5181084f682a93c2a7b97c0c85cc80b8ac5fcd7e0ff047ca7af2a206624", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5H8A6.json", "taxon_id": "34305", "uniprot_accession": "Q5H8A6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/castor-poll-mid-pf06241.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06241", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/castor-poll-mid-pf06241.yaml" } ], "pfam_ids": [ "PF06241", "PF22614" ], "protein_name": "Probable ion channel POLLUX", 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"sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "50828a17b4618089cb70377bda1924077ed49defae033a166a8bcf12f5b95d82", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5N941.json", "taxon_id": "39947", "uniprot_accession": "Q5N941", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/plastid-membrane-go0042170.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042170", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/plastid-membrane-go0042170.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/castor-pollux-sym8-ion-channel-conserved-domain-ipr010420.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010420", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/castor-pollux-sym8-ion-channel-conserved-domain-ipr010420.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/regulator-of-k-conductance-c-terminal-domain-superfamily-ipr036721.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036721", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/regulator-of-k-conductance-c-terminal-domain-superfamily-ipr036721.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8VZM7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06241" ], "protein_name": "Putative ion channel POLLUX-like 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e2cd1d23f492aedf3636468b970ffe5efd591acfdb855b9335cd272794252169", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"data/traits/sequence/domain/interpro/castor-pollux-sym8-ion-channel-conserved-domain-ipr010420.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010420", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/castor-pollux-sym8-ion-channel-conserved-domain-ipr010420.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/regulator-of-k-conductance-n-terminal-lobe-ipr003148.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003148", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/regulator-of-k-conductance-n-terminal-lobe-ipr003148.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/rck-n.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51201", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/rck-n.yaml" } ], "pfam_ids": [ "PF06241" ], "protein_name": "Putative ion channel POLLUX-like 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMVAVQLFTWKPLVLLPSQSSRLDRFASFNRSLSLKSLPLGGIGSFRCPGTFKVKSQRTGDTEPSSSVNLNDFSSILHKSLPYKVVIGCIPLYAVFRIAQKICQELPRLVQNSVGAGLPFACASNSLPTPLKLDVSFPSFQDIRWGLARFLYLFNIQLEKNIGTFLVALMIACVSFVIIGGLLFFKFRKDLPLEDCLWEAWACLISSSTHLKQKTRIERVIGFVLAIWGILFYSRLLSTMTEQFRYNMTKLREGAQMQVLEADHIIICGINSHLPFILKQLNSYHEHAVRLGTATARKQRLLLMSDTPRKQMDKLAEAYSKDFNHIDILTKSCSLNLTKSFERAAASMARAIIILPTKGDRYEVDTDAFLSVLALQPIQKMESIPTIVEVSSPNTYDLLKSISGLKVEPVENVTSKLFVQCSRQKDLIKIYRHLLNYSKNVFNLCSFPNLVGTKYRQLRLGFQEVVVCGLLRDGKVNFHPNDNEELMETDKLLFIAPLNWKKKQLLYTDMKLENITVPTDTRKQVFEKKRSRLSKIIMRPRKSLSKGSDSVKGPTESILLLGWRGDVVQMIEEFDNYLGPGSSMEILSDVSLEDRRRVGDSIGSVKIKNIQVSHKVGNPLNYDTLKQTIMRMKSKYRKGKNIPLTILVISDRDWLLGDPSRADKQSAYSLLLAESICNKLGVKVHNLASEIVDSKLGKQITGLKPSLTFIAAEEVMSLVTAQVAENSELNEVWKDILDADGDEIYVKDVELYMKEGENPSFTELSERAWLRREVAIGYIKGGKKMINPVPKNEPLSLEMDDSLIVISELEGDQPITL", "sequence_length": 817, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d9b6287d36e202dbd973ae5ce24ebb38a0bfbfff0e5ea775bf3e95b32fbd59a6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q940Y9.json", "taxon_id": "3702", "uniprot_accession": "Q940Y9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/castor-pollux-sym8-ion-channel-conserved-domain-ipr010420.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010420", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/castor-pollux-sym8-ion-channel-conserved-domain-ipr010420.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/slo-like-rck-pf22614.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22614", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/slo-like-rck-pf22614.yaml" } ], "pfam_ids": [ "PF06241", "PF22614" ], "protein_name": "Probable ion channel POLLUX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPIHTPRRTSLFQRSKTLPTNSYRRFTSPVIPTFRYDDGDTVSYDGDDSSNLPTVPNPEEKPVPVPSQSPSQRITRLWTQFSLTHCLKFICSCSFTYVMFLRSKVSRLEAENIILLTRCNSSSDNNEMEETNSRAVVFFSVIITFVLPFLLYMYLDDLSHVKNLLRRTNQKKEDVPLKKRLAYSLDVCFSVYPYAKLLALLLATVVLIVYGGLALYAVSDCGVDEALWLSWTFVADSGSHADRVGVGARIVSVAISAGGMLIFATMLGLISDAISKMVDSLRKGKSEVLESNHILILGWSDKLGSLLKQLAIANKSIGGGVVVVLAERDKEEMETDIAKFEFDLMGTSVICRSGSPLILADLKKVSVSNARAIIVLGSDENADQSDARALRVVLSLTGVKEGWKGHVVVEMCDLDNEPLVKLVGGERIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFENAEFYIKKWPQLDGYCFEDVLISFPNAIPCGVKVAADGKIVLNPSDDYVLKEGDEILVIAEDDDTYAPGSLPEVRMCHFPKMQDPPKYPEKILFCGWRRDIDDMIKVLEALLAPGSELWMFNEVPDQEREKKLTDAGLNISKLVNIKLVHRQGNAVIRRHLESLPLETFDSILILAEQSLENSIVHSDSRSLATLLLIRDIQSKRLPYKDAKSSALRISGFPNCCWIRKMQQASDKSIVISEILDSRTKNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLKELFAEKGNELCIRPAEFYIYDQEEVCFYDIMRRARQRQEIIIGYRLAGMEQAVINPTDKSKLTKWSLDDVFVVIASSQ", "sequence_length": 824, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0a6614726ef6a00729da2c6ccc1c4e526c68f95ef3e22d58dd758cf1f2c7c3b7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LTX4.json", "taxon_id": "3702", "uniprot_accession": "Q9LTX4", "uniprot_release": "2026_03" } ], "pfam_id": "PF06241", "short_name": "Castor_Poll_mid", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06242", "short_name": "TrcR", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ccdc124-pf06244.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06244", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ccdc124-pf06244.yaml" } ], "pfam_ids": [ "PF06244", "PF22048" ], "protein_name": "Coiled-coil domain-containing protein 124 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGNPKKRAEKAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAKKNSSLDAFLNETPQTASYSARNIDDALDLLSLNNSSSKDKIDRHPERRFKAALTEYKQSRLPELRKEQPGLRLNQYEDIMYKEFQKHPDNPFNKMNVSYNTSQDEVEQLRKARKAELEARLRE", "sequence_length": 207, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5224b5394589632d9c605fce89afbef4fabc53c95ca17a8b0689c3bc378ddffe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O94389.json", "taxon_id": "284812", "uniprot_accession": "O94389", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ccdc124-pf06244.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06244", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ccdc124-pf06244.yaml" } ], "pfam_ids": [ "PF06244" ], "protein_name": "Coiled-coil domain-containing protein 124", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKKFQGENTKSAAARARRAEAKAAADAKKQKELEDAYWRDEDKHVMRKEQRKEEKEKRRLEQLERKKETQRLLEEEDSKLKGGKAPRVAASSKVTRAQIEETLRRDHQHKESPDPAEKAKSHLEVPLEENVNRRVLEEGSVEARTIEDAIAVLSVTEEAVDRHPERRMRAAYTAFEEAQLPRLKQENPNMRLSQLKQMLKKEWLRSPDNPMNQRAVPFNTPK", "sequence_length": 223, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dc8cabad60ba23076ee516470560b6e912faa9fdfddb29fc432fedf4789aaa1f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2TBV6.json", "taxon_id": "9913", "uniprot_accession": "Q2TBV6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coiled-coil-domain-containing-protein-124-oxs1-c-terminal-ipr054414.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR054414", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coiled-coil-domain-containing-protein-124-oxs1-c-terminal-ipr054414.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ccdc124-pf06244.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06244", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ccdc124-pf06244.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q96CT7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06244" ], "protein_name": "Coiled-coil domain-containing protein 124", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1bc99aeca2983089b8bee203414efc7046bf23a3556dd89feb9dbf847061101d", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPKKFQGENTKSAAARARRAEAKAAADAKKQKELEDAYWKDDDKHVMRKEQRKEEKEKRRLDQLERKKETQRLLEEEDSKLKGGKAPRVATSSKVTRAQIEDTLRRDHQLREAPDTAEKAKSHLEVPLEENVNRRVLEEGSVEARTIEDAIAVLSVAEEAADRHPERRMRAAFTAFEEAQLPRLKQENPNMRLSQLKQLLKKEWLRSPDNPMNQRAVPFNAPK", "sequence_length": 223, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "1bc99aeca2983089b8bee203414efc7046bf23a3556dd89feb9dbf847061101d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96CT7.json", "taxon_id": "9606", "uniprot_accession": "Q96CT7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coiled-coil-domain-containing-protein-124-oxs1-c-terminal-ipr054414.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR054414", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coiled-coil-domain-containing-protein-124-oxs1-c-terminal-ipr054414.yaml" } ], "pfam_ids": [ "PF06244" ], "protein_name": "Coiled-coil domain-containing protein 124", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKKFQGENSKSAAARARRAEAKAAADAKKQKELEDAYWKDEDKHVMRKEQRKEEKEKRRLEQLERKKETQRLLEEEDSRLKGGKAPRVAPAKVTRAQIEDSLRREQRAEPVEKAKSHLELPLEENLNRRLQEEGSVEARTVEDAIAVLSVAEEADRHPERRMRAAFTAFEEVQLPRLKQENPNMRLSQLKQLLKKEWLRSPDNPMNQRALPFNAPK", "sequence_length": 217, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aa8b1a9119e5b880d564543e4bc557fc42a1943ee248ef636be44ca161824781", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D8X2.json", "taxon_id": "10090", "uniprot_accession": "Q9D8X2", "uniprot_release": "2026_03" } ], "pfam_id": "PF06244", 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{ "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/putative-bacterial-toxin-ydat-1-10-3600-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.3600.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/putative-bacterial-toxin-ydat-1-10-3600-10.yaml" } ], "pfam_ids": [ "PF06254" ], "protein_name": "Transcriptional regulator YdaT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQAVYRKAHFSGGGSSDDSVIVH", "sequence_length": 140, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fdfeaf2c078ed2570ef724bc6e33b646328d5c8724cbec7b297ba3acb0f07297", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76064.json", "taxon_id": "83333", "uniprot_accession": "P76064", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ydat-toxin-pf06254.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ydat-toxin-pf06254.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/transcriptional-regulator-ydat-like-superfamily-ipr037042.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR037042", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/transcriptional-regulator-ydat-like-superfamily-ipr037042.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/putative-bacterial-toxin-ydat-1-10-3600-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.3600.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/putative-bacterial-toxin-ydat-1-10-3600-10.yaml" } ], "pfam_ids": [ "PF06254" ], "protein_name": "Protein YdfX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKITPEQAREALDAWICRPGMTQEQATILITEAFWALKERPNIDVQRVTYEGGAIDQRALGVNRVKIFERWKAIDTRDKREKFTALVPAIMEATTG", "sequence_length": 96, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a872d7826402677380388981b53335469a60474ea83bdf7a8125cf752a95809d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76165.json", "taxon_id": "83333", "uniprot_accession": "P76165", "uniprot_release": "2026_03" } ], "pfam_id": "PF06254", "short_name": "YdaT_toxin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06255", "short_name": "MafB", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/biofilm-formation-stimulator-veg-nf046033.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF046033", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/biofilm-formation-stimulator-veg-nf046033.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/veg-pf06257.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/veg-pf06257.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P37466", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06257" ], "protein_name": "Protein Veg", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7f3c0ddec4d2b287d53f30ef225c1444a090422eea99e2e652c5e8d6c83e86e3", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAKTLSDIKRSLDGNLGKRLTLKANGGRRKTIERSGILAETYPSVFVIQLDQDENSFERVSYSYADILTETVELTFNDDAASSVAF", "sequence_length": 86, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7f3c0ddec4d2b287d53f30ef225c1444a090422eea99e2e652c5e8d6c83e86e3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37466.json", "taxon_id": "224308", "uniprot_accession": "P37466", "uniprot_release": "2026_03" } ], "pfam_id": "PF06257", "short_name": "VEG", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mito-fiss-elm1-pf06258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mito-fiss-elm1-pf06258.yaml" } ], "pfam_ids": [ "PF06258" ], "protein_name": "Mitochondrial fission protein ELM1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRPILLPDPPSLSTGVPDIFEQGGSHNVVRRAVVIGNGFPGSENQCIGLVRALGLSDNHLLYRVTRPKGGLNEWLHWLPVGFHKKLDFILRHIYLYSRLMLGSKQSKYISSVPSENGGNVGLASILEADVKGIVNLARQTYEKDGPLIVIACGRDTISIASSIRRLASENVFVVQIQHPRSHLNRFDMVITPRHDYYPLTLEAQEQVPRFMRSWITPREPPQDHVVLTTGALHQIDYASLRKAASAWHDEFAALPKPLVVVNIGWPRSNCRYGADLAKQLTDSLLNVLATCGSVRITLSYKTPAKVSRVIFKELGDNPKVYIWNGQEPNPYMGHLAWGDAFVVTADSVSLISEACSTGKPVYVVGADHCKWKIAEFQKSLRERGVVRSFTGFEDMSESWSYPPLNDTAEAATRIRRELAARGWSLRS", "sequence_length": 427, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "30af429f6a62eb29cd545f53a58167a866ffb266993533b78cf1c95b7e6418ff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q93YN4.json", "taxon_id": "3702", "uniprot_accession": "Q93YN4", "uniprot_release": "2026_03" } ], "pfam_id": "PF06258", "short_name": "Mito_fiss_Elm1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/abhydrolase-8-pf06259.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/abhydrolase-8-pf06259.yaml" } ], "pfam_ids": [ "PF06259" ], "protein_name": "Uncharacterized protein MT0992", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQRELTRLQNGWLSRDGVWHTDTDKLADLRALRDTLAAHPGTSLILLDTASDPRKVLAAVGVGDVDNAERVGVTMGGLNTRVSSSVGDMVKEAGIQRAKAAELRERAGWPNYDAVASIAWLGYDAPDGLKDVMHDWSARDAAGPLNRFDKGLAATTNVSDQHITAFGHSYGSLVTSLALQQGAPVSDVVLYGSPGTELTHASQLGVEPGHAFYMIGVNDHVANTIPEFGAFGSAPQDVPGMTQLSVNTGLAPGPLLGDGQLHERA", "sequence_length": 266, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7153c36e9d66add1782a31a7ed291db71446a5aeb75859942cd59a1857858aa2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKM6.json", "taxon_id": "83331", "uniprot_accession": "P9WKM6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/abhydrolase-8-pf06259.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/abhydrolase-8-pf06259.yaml" } ], "pfam_ids": [ "PF06259" ], "protein_name": "Uncharacterized protein Rv0963c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQRELTRLQNGWLSRDGVWHTDTDKLADLRALRDTLAAHPGTSLILLDTASDPRKVLAAVGVGDVDNAERVGVTMGGLNTRVSSSVGDMVKEAGIQRAKAAELRERAGWPNYDAVASIAWLGYDAPDGLKDVMHDWSARDAAGPLNRFDKGLAATTNVSDQHITAFGHSYGSLVTSLALQQGAPVSDVVLYGSPGTELTHASQLGVEPGHAFYMIGVNDHVANTIPEFGAFGSAPQDVPGMTQLSVNTGLAPGPLLGDGQLHERA", "sequence_length": 266, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7153c36e9d66add1782a31a7ed291db71446a5aeb75859942cd59a1857858aa2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKM7.json", "taxon_id": "83332", "uniprot_accession": "P9WKM7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hydro-n-hd-pf22905.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22905", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hydro-n-hd-pf22905.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/abhydrolase-8-pf06259.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/abhydrolase-8-pf06259.yaml" } ], "pfam_ids": [ "PF06259", "PF22905" ], "protein_name": "Uncharacterized protein MT2140", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQLRHINIRALIAEAGGDPWAIEHSLHAGRPAQIAELAEAFHAAGRCTAEANAAFEEARRRFEASWNRENGEHPINDSAEVQRVTAALGVQSLQLPKIGVDLENIAADLAEAQRAAAGRIATLESQLQRIDDQLDQALELEHDPRLAAAERSELDALITCLEQDAIDDTASALGQLQSIRAGYSDHLQQSLAMLRADGYDGAGLQGLDAPQSPVKPEEPIQIPPPGTGAPEVHRWWTSLTSEERQRLIAEHPEQIGNLNGVPVSARSDANIAVMTRDLNRVRDIATRYRTSVDDVLGDPAKYGLSAGDITRYRNADETKKGLDHNARNDPRNPSPVYLFAYDPMAFGGKGRAAIAIGNPDTAKHTAVIVPGTSSSVKGGWLHDNHDDALNLFNQAKAADPNNPTAVIAWMGYDAPNDFTDPRIATPMLARIGGAALAEDVNGLWVTHLGVGQNVTVLGHSYGSTTVADAFALGGMHANDAVLLGCPGTDLAHSAASFHLDGGRVYVGAASTDPISMLGQLDSLSQYVNRGNLAGQLQGLAVGLGTDPAGDGFGSVRFRAEVPNSDGINPHDHSYYYHRGSEALRSMADIASGHGDALASDGMLAQPRHQPGVEIDIPGLGSVEIDIPGTPASIDPEWSRPPGSITDDHVFDAPLHR", "sequence_length": 656, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "975f05f15b3da5668851f73dc00da0894339a20e3391d319c97314f4fcf6c2ca", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLK6.json", "taxon_id": "83331", "uniprot_accession": "P9WLK6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hydro-n-hd-pf22905.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22905", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hydro-n-hd-pf22905.yaml" } ], "pfam_ids": [ "PF06259", "PF22905" ], "protein_name": "Uncharacterized protein Rv2079", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQLRHINIRALIAEAGGDPWAIEHSLHAGRPAQIAELAEAFHAAGRYTAEANAAFEEARRRFEASWNRENGEHPINDSAEVQRVTAALGVQSLQLPKIGVDLENIAADLAEAQRAAAGRIATLESQLQRIDDQLDQALELEHDPRLAAAERSELDALITCLEQDAIDDTASALGQLQSIRAGYSDHLQQSLAMLRADGYDGAGLQGLDAPQSPVKPEEPIQIPPPGTGAPEVHRWWTSLTSEERQRLIAEHPEQIGNLNGVPVSARSDANIAVMTRDLNRVRDIATRYRTSVDDVLGDPAKYGLSAGDITRYRNADETKKGLDHNARNDPRNPSPVYLFAYDPMAFGGKGRAAIAIGNPDTAKHTAVIVPGTSSSVKGGWLHDNHDDALNLFNQAKAADPNNPTAVIAWMGYDAPNDFTDPRIATPMLARIGGAALAEDVNGLWVTHLGVGQNVTVLGHSYGSTTVADAFALGGMHANDAVLLGCPGTDLAHSAASFHLDGGRVYVGAASTDPISMLGQLDSLSQYVNRGNLAGQLQGLAVGLGTDPAGDGFGSVRFRAEVPNSDGINPHDHSYYYHRGSEALRSMADIASGHGDALASDGMLAQPRHQPGVEIDIPGLGSVEIDIPGTPASIDPEWSRPPGSITDDHVFDAPLHR", "sequence_length": 656, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b3e0ca6f074eda83d5a2e5dda540d1b781d9ea662632f96618309fa022a11d45", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLK7.json", "taxon_id": "83332", "uniprot_accession": "P9WLK7", "uniprot_release": "2026_03" } ], "pfam_id": "PF06259", "short_name": "Abhydrolase_8", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06260", "short_name": "DUF1024", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06262", "short_name": "Zincin_1", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yutd-like-pf06265.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", 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"MEDVEARFAHLLQPIRDLTKNWEVDVAAQLGEYLEELDQICISFDEGKTTMNFIEAALLIQGSACVYSKKVEYLYSLVYQALDFISGKRRAKQLSSVQEDRANGVASSGVPQEAENEFLSLDDFPDSRTNVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRKDFRMNTCVPHPRGAFMLEPEGMSPMEPAGVSPMPGTQKDTGRTEEQPMEVSVCRSPVPALGFSQEPGPSPEGPMPLGGGEDEDAEEAVELPEASAPKAALEPKESRSPQQSAALPRRYMLREREGAPEPASCVKETPDPWQSLDPFDSLESKPFKKGRPYSVPPCVEEALGQKRKRKGAAKLQDFHQWYLAAYADHADSRRLRRKGPSFADMEVLYWTHVKEQLETLRKLQRREVAEQWLRPAEEDHLEDSLEDLGAADDFLEPEEYMEPEGADPREAADLDAVPMSLSYEELVRRNVELFIATSQKFVQETELSQRIRDWEDTVQPLLQEQEQHVPFDIHTYGDQLVSRFPQLNEWCPFAELVAGQPAFEVCRSMLASLQLANDYTVEITQQPGLEMAVDTMSLRLLTHQRAHKRFQTYAAPSMAQP", "sequence_length": 605, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "353ce079ea3379e72a313b624d51ef620f2866c9a533442ba76209ed6b681ff9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6IBW4.json", "taxon_id": "9606", "uniprot_accession": "Q6IBW4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-chromosome-condensation-go1905821.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/condensin-2-complex-subunit-h2-c-terminal-ipr031737.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031737", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/condensin-2-complex-subunit-h2-c-terminal-ipr031737.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/condensin-ii-complex-subunit-h2-middle-domain-ipr031719.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031719", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/condensin-ii-complex-subunit-h2-middle-domain-ipr031719.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/condensin-ii-complex-subunit-h2-n-terminal-ipr009378.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009378", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/condensin-ii-complex-subunit-h2-n-terminal-ipr009378.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cndh2-m-pf16869.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16869", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cndh2-m-pf16869.yaml" } ], "pfam_ids": [ "PF06278", "PF16858", "PF16869" ], "protein_name": "Condensin-2 complex subunit H2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDVEVRFAHLLQPIRDLTKNWEVDVAAQLGEYLEELDQICISFDEGKTTMNFIEAALLIQGSACVYSKKVEYLYSLVYQALDFISGKRRAKQLSLVQEDGSKKTVNSETPCETENEFLSLDDFPDSRANVDLKNDQASSELLIIPLLPMALVAPDEVEKNSSPLYSCQGDILASRKDFRMNTCMPNPRGCFMLDPVGMCPVEPVVPVEPYPMSRSQKDPEDAEEQPMEVSRNGSPVPVPDISQEPDGPALSGGEEDAEDGAEPLEVALEPAEPRTSQQSAILPRRYMLRERQGAPEPASRLQETPDPWQSLDPFDSLESKVFQKGKPYSVPPGVEEAPGQKRKRKGATKLQDFHKWYLDAYAEHPDGRRARRKGPTFADMEVLYWKHVKEQLETLQKLRRRKINERWLPGAKQDLWPTEEDRLEESLEDLGVADDFLEPEEYVEEPAGVMPEEAADLDAEAMPESLRYEELVRRNVELFIATSQKFIQETELSQRIRDWEDTIQPLLQEQEQHVPFDIHIYGDQLASRFPQLNEWCPFSELVAGQPAFEVCRSMLASLQLANDYTVEITQQPGLEAAVDTMSLRLLTHQRAHTRFQTYAAPSMAQP", "sequence_length": 607, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a1bd0e561ea112e2e77ae627075072c3a7b03e9c4e487c5046d633f635593db9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BSP2.json", "taxon_id": "10090", "uniprot_accession": "Q8BSP2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/condensin-2-complex-subunit-h2-c-terminal-ipr031737.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031737", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/condensin-2-complex-subunit-h2-c-terminal-ipr031737.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/condensin-ii-complex-subunit-h2-middle-domain-ipr031719.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031719", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/condensin-ii-complex-subunit-h2-middle-domain-ipr031719.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/condensin-ii-complex-subunit-h2-n-terminal-ipr009378.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009378", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/condensin-ii-complex-subunit-h2-n-terminal-ipr009378.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cndh2-c-pf16858.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16858", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cndh2-c-pf16858.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cndh2-m-pf16869.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16869", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cndh2-m-pf16869.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cndh2-n-pf06278.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06278", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cndh2-n-pf06278.yaml" } ], "pfam_ids": [ "PF06278", "PF16858", "PF16869" ], "protein_name": "Condensin-2 complex subunit H2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSHGGGEVRGERIHTVQPERDLVANWEVDLSEKLEEYLLKICSGEITGNEEDGQIPVNFAEAALLLQGSVQVYSKKVEYLYNLVLRTLEFLSKQRDQEQSKGTSNENEASSSRQVDEEENDLFWNVDDIPVDTKNRLDSSVGGDTCPSQFVKPPANLVVLEGDCLDTSGDGGELESYLLATTHLYRDFILLDPCDAVAVNEFLGDNYGGKGRNSAHRGSSVRKSFHSSVGRSGGSARKSSVGKNQGTNVHLSPICGNGPNDQNCDQGSQPPVFEDNDHGFDMDNEYGGAMDFSDTDADEDDPWKPLNPYEPGKLKVKPFKKVKILKKIGWSITKDHMTSMFPLARPNGPISSELIEIWKMHGCASKDEQASQDIPYYEKLREMLVNGGNQPCGANGNYNDNDKDNHDEANNGDFHDFGEHDGDDAEHPFMDEDVLNMNDGGAAEFHNYDGFENGESNCQESLEDLCRSHLDALLANIAKSEKQTDLAARVSTWKQKIEQNLEEQELHPPFDIQEYGDRIINKLTVEESGNVETFTDLMKDQEKHEVARAFSALLQLVNNGDVDLEKPGNSTNEPMCYTAVKPFSVRLLKVHNRKNEKRGIHLPQKRAKSPITKGKSHESPPPKKRNTCSVSSQTRKVSLKISKINGVGVRCTPNSKKRRKGRSDDVTEVTEVASIEKSLGKL", "sequence_length": 683, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b2d17f8194f98a48312b2219665b4a2956abc3a3b4140971a4cafc4518a9c5b7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LUR0.json", "taxon_id": "3702", "uniprot_accession": "Q9LUR0", "uniprot_release": "2026_03" } ], "pfam_id": "PF06278", "short_name": "CNDH2_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06279", "short_name": "DUF1033", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cryptococcus neoformans (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fn3-5-pf06280.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06280", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fn3-5-pf06280.yaml" } ], "pfam_ids": [ "PF00082", "PF02225", "PF06280" ], "protein_name": "ProQSP1 protease 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVAFHASSALLSFALLATGFANAFSLDDIKRGSDSVIPGRYIVEFDSKAHLTSAGIKRAATPHEYIYRELDARSSSYTVHQEYACDLFFGASLSIFSDADLAVLLDIAGVIDLRAVHLLTLPAEPLSKENTQWPANSPHSPSSSSASATASATSTSAPFSNLPQIQADAVQATGNKGKGIKIGIIDGGVDYTREPLGGCFGSGCKIAGGYDFVGDNYDGSNDPVPDNDPYDNCYSHGTFISGIIGANQNIYGAVGVAPEASLYVYRVFGCNGAASDDIVLAAMQKAYDDDMDVINLSLGEPSGWTESTLSVFASRVVAKGTVVTVSAGNQGQVGGFYSSSPAAGKGVINVGSSDSSIYPAHLATVSTGYGPIAYYNYKAYSDKTLPLYTFDSDIYGCTLPDDVPDLSSYLVIVRRGECSLSQKAQNAYNAGGTAIFVVNDESALPIYQNFPLIDFALISYDDGNYLLNQLNSSANTTVSFSFNPIALPNIWTANTTSYFSEIGPTNDLYFAPSVLAPGTNVVGVMPTTFYNWTIADGTSYSSAYAAGAAALYLAAKGTKNISPSDVLSALGVTAQQLPVSVSDSSLVSVAVQGAGRLRLSNAIHASAVISPSEITLNDTANFDKLHVLTIKNPGNKWVTYKLSHEPAGTALAFQSGLNQSNDQPLPQVSNAASVNIFPSSLTLWPGQSLLTTVKFTAPTGLDAQTFPIYSGFIKVTGGGNTVKVPYMGVAANMKDMPVLDPTDWYLGMNSPAIVDVNGDVQQGSTVYTFSNVSYPSVLYRLAGGTPLLLIDLIDANANLTFTPDYTTRKRSSTPEHETEHDKRHSSLSARRLKSTWAASDTTTKTKGLHSLWCHLTNYKAPGCSKTGNTFQKVPIVGNVYVGEYLPRSTDNADGQGGDYSTFNLSTATFSNGTSIPNGDYQFLMRALHITGDKTKESDYESWVSQPFTIAQ", "sequence_length": 951, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f0c30d5f7a1dd8c21bb1dd24f572893f648cfd5e33201394c0a32750053e00dc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/J9VDC2.json", "taxon_id": "235443", "uniprot_accession": "J9VDC2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus pyogenes serotype M3 (strain SSI-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chu-c-pf13585.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13585", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chu-c-pf13585.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fn3-5-pf06280.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06280", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fn3-5-pf06280.yaml" } ], "pfam_ids": [ "PF00082", "PF02225", "PF06280", "PF13585", "PF22143" ], "protein_name": "C5a peptidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKKQKLPFDKLAIALMSTSILLNAQSDIKANTVTEDTPATEQAVEVPQQTAVSEEAPSSSSKETNPPQTPDDAEETVADKANDLAPQAPAKTADIPATSKETIRDLNDPSHVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKSKARYQSKEDLEKAKKDHGITYGEWVNDKVAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPKVLPTASGTKLSRFSSWGLTADGNIKPDIAAPGQDILSSVANNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATMYVTDKDNTSSKVHLNNVSDKFEVTVTVHNKSDKPQELYYQATVQTDKVDGKHFALAPKALYETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFRGDFGNLSALEKPIYDSKDGSSYYHEANSDAKDQLDGDGLQFYALKNNFTALTTESNPWTIIKAVKEGVENIEDIESSEITETIFAGTFAKQDDDSHYYIHRHANGKPYAAISPNGDGNRDYVQFQGTFLRNAKNLVAEVLDKEGDVVWTSEVTEQVVKNYNNDLASTLGSTRFEKTRWDGKDKDGKVVANGTYTYRVRYTPISSGAKEQHTDFDVIVDNTTPEAATSATFSAEDRRLTLASKPKTSQPVYRERIAYTYMDEDLPTTEYISPNEDGTFTLPEEAETMEGATVPLKMSDFTYVVEDMAGNITYTPVTNLLEGHSNKPEQDGSDQVPDKTPETKPEQDGSGQAPDKKPEAKPEQDGSGQAPDKKPETKPEKDSSGQTPGKTPQKGQPSRTLEKRSSKRALATKASARDQLPTTNDKDTNRLHLLKLVMTTFFFGLVAHIFKTKRQKETKK", "sequence_length": 1169, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a352232a9dd5d588fbfca6fdb79b483c3eebbe7b3f188dd0bdbe95c8d8aad20c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DD35.json", "taxon_id": "193567", "uniprot_accession": "P0DD35", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lactococcus lactis subsp. cremoris (strain SK11)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glucodextran-b-pf09136.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09136", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glucodextran-b-pf09136.yaml" } ], "pfam_ids": [ "PF00082", "PF00746", "PF02225", "PF06280", "PF09136" ], "protein_name": "PIII-type proteinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQRKKKGLSILLAGTVALGALAVLPVGEIQAKAAISQQTKGSSLANTVTAATAKQAATDTTAATTNQAIATQLAAKGIDYNKLNKVQQQDIYVDVIVQMSAAPASENGTLRTDYSSTAEIQQETNKVIAAQASVKAAVEQVTQQTAGESYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDAKANSMANVQAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTAKHGRYFNSKVPYGFNYADNNDTITDDTVDEQHGMHVAGIIGANGTGDDPAKSVVGVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGSPGTSRGATTVASAENTDVITQAVTITDGTGLQLGPETIQLSSHDFTGSFDQKKFYIVKDASGNLSKGALADYTADAKGKIAIVKRGEFSFDDKQKYAQAAGAAGLIIVNTDGTATPMTSIALTTTFPTFGLSSVTGQKLVDWVTAHPDDSLGVKITLAMLPNQKYTEDKMSDFTSYGPVSNLSFKPDITAPGGNIWSTQNNNGYTNMSGTSMASPFIAGSQALLKQALNNKNNPFYAYYKQLKGTALTDFLKTVEMNTAQPINDINYNNVIVSPRRQGAGLVDVKAAIDALEKNPSTVVAENGYPAVELKDFTSTDKTFKLTFTNRTTHELTYQMDSNTDTNAVYTSATDPNSGVLYDKKIDGAAIKAGSNITVPAGKTAQIEFTLSLPKSFDQQQFVEGFLNFKGSDGSRLNLPYMGFFGDWNDGKIVDSLNGITYSPAGGNFGTVPLLKNKNTGTQYYGGMVTDADGNKTVDDQAIAFSSDKNALYNEISMKYYLLRNISNVQVDILDGQGNKVTTLSSSTNRKKTYYNAHSQQYIYYNAPAWDGTYYDQRDGNIKTADDGSYTYRISGVPEGGDKRQVFDVPFKLDSKAPTVRHVALSAKTENGKTQYYLTAEAKDDLSGLDATKSVKTEINEVTNLDATFTDAGTTADGYTKIETPLSDEQAQALGNGDNSAELYLTDNASNATDQDASVQKPGSTSFDLIVNGGGIPDKISSTTTGYEANTQGGGTYTFSGTYPAAVDGTYTDAQGKKHDLNTTYDAATNSFTASMPVTNADYAAQVDLYADKAHTQLLKHFDTKVRLTAPTFTDLKFNNGSDQTSEATIKVTGTVSADTKTVNVGDTVAALDAQHHFSVDVPVNYGDNTIKVTATDEDGNTTTEQKTITSSYDPDMLKNSVTFDQGVTFGANEFNATSAKFYDPKTGIATITGKVKHPTTTLQVDGKQIPIKDDLTFSFTLDLGTLGQKPFGVVVGDTTQNKTFQEALTFILDAVAPTLSLDSSTDAPVYTNDPNFQITGTATDNAQYLSLSINGSSVASQYVDININSGKPGHMAIDQPVKLLEGKNVLTVAVTDSEDNTTTKNITVYYEPKKTLAAPTVTPSTTEPAKTVTLTANSAATGETVQYSADGGKTYQDVPAAGVTVTANGTFKFKSTDLYGNESPAVDYVVTNIKADDPAQLQAAKQELTNLIASAKTLSASGKYDDATTTALAAATQKAQTALDQTNASVDSLTGANRDLQTAINQLAAKLPADKKTSLLNQLQSVKAALGTDLGNQTDSSTGKTFTAALDDLVAQAQAGTQTDDQLQATLAKVLDAVLAKLAEGIKAATPAEVGNAKDAATGKTWYADIADTLTSGQASADASDKLAHLQALQSLKTKVAAAVEAAKTVGKGDGTTGTSDKGGGQGTPAPAPGDTGKDKGDEGSQPSSGGNIPTKPATTTSTTTDDTTDRNGQLTSGTSDKGGGQGTPAPAPGDIGKDKGDEGSQPSSGGNIPTNPATTTSTTTDDTTDRNGQLTSGKGALPKTGETTERPAFGFLGVIVVSLMGVLGLKRKQREE", "sequence_length": 1962, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "34edee4c171626cf14364a787bce4f5a6a533038bd79fccd56f0b5503f960ce4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P15292.json", "taxon_id": "272622", "uniprot_accession": "P15292", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lactococcus lactis subsp. cremoris", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glucodextran-b-pf09136.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09136", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glucodextran-b-pf09136.yaml" } ], "pfam_ids": [ "PF00082", "PF00746", "PF02225", "PF06280", "PF09136" ], "protein_name": "PII-type proteinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQRKKKGLSILLAGTVALGALAVLPVGEIQAKAAISQQTKGSSLANTVTAATAKQAATDTTAATTNQAIATQLAAKGIDYNKLNKVQQQDIYVDVIVQMSAAPASENGTLRTDYSSTAEIQQETNKVIAAQASVKAAVEQVTQQTAGESYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDAKANSMANVQAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTAKHGRYFNSKVPYGFNYADNNDTITDDTVDEQHGMHVAGIIGANGTGDDPAKSVVGVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGTPGTSRGATTVASAENTDVITQAVTITDGTGLQLGPETIQLSSNDFTGSFDQKKFYVVKDASGNLSKGKVADYTADAKGKIAIVKRGELTFADKQKYAQAAGAAGLIIVNNDGTATPVTSMALTTTFPTFGLSSVTGQKLVDWVAAHPDDSLGVKIALTLVPNQKYTEDKMSDFTSYGPVSNLSFKPDITAPGGNIWSTQNNNGYTNMSGTSMASPFIAGSQALLKQALNNKNNPFYAYYKQLKGTALTDFLKTVEMNTAQPINDINYNNVIVSPRRQGAGLVDVKAAIDALEKNPSTVVAENGYPAVELKDFTSTDKTFKLTFTNRTTHELTYQMDSNTDTNAVYTSATDPNSGVLYDKKIDGAAIKAGSNITVPAGKTAQIEFTLSLPKSFDQQQFVEGFLNFKGSDGSRLNLPYMGFFGDWNDGKIVDSLNGITYSPAGGNFGTVPLLTNKNTGTQYYGGMVTDADGNQTVDDQAIAFSSDKNALYNDISMKYYLLRNISNVQVDILDGQGNKVTTLSSSTNRKKTYYNAHSQQYIYYHAPAWDGTYYDQRDGNIKTADDGSYTYRISGVPEGGDKRQVFDVPFKLDSKAPTVRHVALSAKTENGKTQYYLTAEAKDDLSGLDATKSVKTAINEVTNLDATFTDAGTTADGYTKIETPLSDEQAQALGNGDNSAELYLTDNASNATDQDASVQKPGSTSFDLIVNGGGIPDKISSTTTGYEANTQGGGTYTFSGTYPAAVDGTYTDAQGKKHDLNTTYDAATNSFTASMPVTNADYAAQVDLYADKAHTQLLKHFDTKVRLTAPTFTDLKFNNGSDQTSEATIKVTGTVSADTKTVNVGDTVAALDAQHHFSVDVPVNYGDNTIKVTATDEDGNTTTEQKTITSSYDPDMLKNSVTFDQGVTFGANEFNATSAKFYDPKTGIATITGKVKHPTTTLQVDGKQIPIKDDLTFSFTLDLGTLGQKPFGVVVGDTTQNKTFQEALTFILDAVAPTLSLDSSTDAPVYTNNPNFQITGTATDNAQYLSLSINGSSVASQYVDININSGKPGHMAIDQPVKLLEGKNVLTVAVTDSEDNTTTKNITVYYEPKKTLAAPTVTPSTTEPAKTVTLTANSAATGETVQYSADGGKTYQDVPAAGVTVTANGTFKFKSTDLYGNESPAVDYVVTNIKADDPAQLQAAKQELTNLIASAKTLSASGKYDDATTTALAAATQKAQTALDQTNASVDSLTGANRDLQTAINQLAAKLPADKKTSLLNQLQSVKAALETDLGNQTDSSTGKTFTAALDDLVAQAQAGTQTDDQLQATLAKVLDAVLAKLAEGIKAATPAEVGNAKDAATGKTWYADIADTLTSGQASADASDKLAHLQALQSLKTKVAAAVEAAKTVGKGDGTTGTSDKGGGQGTPAPTPGDIGKDKGDEGSQPSSGGNIPTNPATTTSTSTDDTTDRNGQLTSGKGALPKTGETTERPAFGFLGVIVVSLMGVLGLKRKQREE", "sequence_length": 1902, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9f5782ca4c5e6c8044eecaaf0093aeb0beac89cc2e06a15288d51f6b9bd412f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P15293.json", "taxon_id": "1359", "uniprot_accession": "P15293", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus pyogenes", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chu-c-pf13585.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13585", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chu-c-pf13585.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fn3-5-pf06280.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06280", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fn3-5-pf06280.yaml" } ], "pfam_ids": [ "PF00082", "PF02225", "PF06280", "PF13585", "PF22143" ], "protein_name": "C5a peptidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKKQKLPFDKLAIALMSTSILLNAQSDIKANTVTEDTPVTEQAVETPQPTAVSEEVPSSKETKTPQTPDDAEETIADDANDLAPQAPAKTADTPATSKATIRDLNDPSQVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAMVKTDDQQDKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFKDKVANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKTITFNATPKVLPTASGTKLSRFSSWGLTADGNIKPDIAAPGQDILSSVANNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATMYVTDKDNTSSKVHLNNVSDKFEVTVTVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYEASWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFRGDFGNLSAVEKPIYDSKDGSSYYHEANSDAKDQLDGDGLQFYALKNNFTALTTESNPWTIIKAVKEGVENIEDIESSEITETIFAGTFAKQDDDSHYYIHRHANGEPYAAISPNGDGNRDYVQFQGTFLRNAKNLVAEVLDKEGNVVWTSEVTEQVVKNYNNDLASTLGSTRFEKTRWDGKDKDGKVVANGTYTYRVRYTPISSGAKEQHTDFDVIVDNTTPEVATSATFSTEDRRLTLASKPKTSQPVYRERIAYTYMDEDLPTTEYISPNEDGTFTLPEEAETMEGATVPLKMSDFTYVVEDMAGNITYTPVTKLLEGHSNKPEQDGSGQTPDKKPEAKPEQDGSDQAPDKKPEAKPEQDGSGQTPDKKPETKPEKDSSGQTPGKTPQKGQPSRTLEKRSSKRALATKASTRDQLPTTNDKDTNRLHLLKLVMTTFFFGLVAHIFKTKRQKETKK", "sequence_length": 1167, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b478d8a4b19d48e3b6c4a07b2b8e93fe244c2542059dce6ad79b942c53147256", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P15926.json", "taxon_id": "1314", "uniprot_accession": "P15926", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lacticaseibacillus paracasei", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glucodextran-b-pf09136.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09136", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glucodextran-b-pf09136.yaml" } ], "pfam_ids": [ "PF00082", "PF00746", "PF02225", "PF06280", "PF09136" ], "protein_name": "PII-type proteinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQRKKKGLSILLAGTVALGALAVLPVGEIQAKAAISQQTKVSSLANTVKAATAKQAATDTTAATTNQAIATQLAAKGIDYNKLNKVQQQDTYVDVIVQMSAAPASENGTLRTDYSSTAEIQQETNKVIAAQASVKAAVEQVTQQTAGESYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDAKANSMANVQAVWSNYKYKGEGTVVSVIDTGIDPTHKDMRLSDDKDVKLTKYDVEKFTDTAKHGRYFTSKVPYGFNYADNNDTITDDTVDEQHGMHVAGIIGANGTGDDPTKSVVGVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPEIAAVQNANESGTAAVISAGNSGTSGSATQGVNKDYYGLQDNEMVGTPGTSRGATTVASAENTDVISQAVTITDGKDLQLGPETIQLSSNDFTGSFDQKKFYVVKDASGDLSKGAAADYTADAKGKIAIVKRGELNFADKQKYAQAAGAAGLIIVNNDGTATPLTSIRLTTTFPTFGLSSKTGQKLVDWVTAHPDDSLGVKIALTLLPNQKYTEDKMSDFTSYGPVSNLSFKPDITAPGGNIWSTQNNNGYTNMSGTSMASPFIAGSQALLKQALNNKNNPFYADYKQLKGTALTDFLKTVEMNTAQPINDINYNNVIVSPRRQGAGLVDVKAAIDALEKNPSTVVAENGYPAVELKDFTSTDKTFKLTFTNRTTHELTYQMDSNTDTNAVYTSATDPNSGVLYDKKIDGAAIKAGSDITVPAGKTAQIEFTLSLPKSFDQQQFVEGFLNFKGSDGSRLNLPYMGFFGDWNDGKIVDSLNGITYSPAGGNYGTVPLLTNKNTGHQYYGGMVTDADGKQTVDDQAIAFSSDKNALYNDISMQYYLLRNISNVQVDILDGQGNKVTTLSSSTNQTKTYYDAHSQKYIYYNAPAWDGTYYDQRDGNIKTADDGSYTYRISGVPEGGDKRQVFDVPFKLDSKAPTVRHVALSAKTENGKTQYYLTAEAKDDLSGLDATKSVKTAINEVTNLDATFTDAGTTADGYTKIETPLSDEQAQALGNGDNSAELYLTDNASNATNQDASVQKPGSTSFDLIVNGGGIPDKISSTTTGYEANTQGGGTYTFSGTYPAAVDGTYTDAQGKKHDLNTTYDAATNSFTASMAVTNADYAAQVDLYADKAHTQLLKHFDTKVRLTAPTFTDLKFNNGSDQTSEATIKVTGTVSSDTKTVNVGDTVAALDAQHHFSVDVPVNYGDNTIKVTATDEDGNTTTEQKTITSSYDPDVLKNAVTFDQGVKFGANEFNATSAKFYDPKTGIATITGKVKHPTTTLQVDGKQISIKNDLTFSFTLDLGTLGQKPFGVVVGDTTQNKTFQEALTFILDAVAPTLSLDSSTDAPVYTNDPNFQITGTATDNAQYLSLAINGSHVASQYADININSGKPGHMAIDQPVKLLEGKNVLTVAVTDSENNTTTKKITVYYEPKKTLAAPTVTPSTTEPAKTVTLTANAAATGETVQYSADGGKTYQDVPAAGVTVTANGTFKFKSTDLYGNESPAVDYVVTNIKADDPAQLQTAKQALTNLIASAKTLSASGKYDDATTTALAAATQKAQTALDQTDASVDSLTGANRDLQTAINQLAAKLPADKKTSLLNQLQSVKAALGTDLGNQTDPSTGKTFTAALDDLVAQAQAGTQTADQLQASLAKVLDAVLAKLAEGIKAATPAEVGNAKDAATGKTWYADIADTLTSGQASADASDKLAHLQALQSLKTKVAAAVEAAKTAGKGDDTTGTSDKGGGQGTPAPAPGDTGKDKGDEGSQPSSGGNIPTKPATTTSTSTDDTTDRNGQHTSGKGALPKTAETTERPAFGFLGVIVVSLMGVLGLKRKQREE", "sequence_length": 1902, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9f9c9b7ce9c9e0bdecb67e6c3cd656eaea761ac66f50379eece2c5964b5a39a1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q02470.json", "taxon_id": "1597", "uniprot_accession": "Q02470", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus pyogenes serotype M18 (strain MGAS8232)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chu-c-pf13585.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13585", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chu-c-pf13585.yaml" } ], "pfam_ids": [ "PF00082", "PF02225", "PF06280", "PF13585", "PF22143" ], "protein_name": "C5a peptidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKKQKLPFDKLAIALMSTSILLNAQSDIKANTVTEDTPAAEQAVETPQPTAVSEEVPSSKETKTPQTPDNAEETVADKANDLALQAPAKTADTPATSKATIRDLNDPSQVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKENPQKTITFNATPKVLPTASGTKLSRFSSWGLTADGNIKPDIAAPGQDILSSVANNKYAKLSGTSMSAPLVAGIMGLLQKQYEIQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATMYVTDKDNTSSKVHLNNVSDKFEVTVTVHNKSDKPQELYYQATVQTDKVDGKHFALAPKALYETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPKKEELMSIPYIGFRGDFGNLSALEKPIYDSKDGSSYYHEANSDAKDQLDGDGLQFYALKNNFTALTTESNPWTIIKAVKEGVENIEDIESSEITETIFAGTFAKQDDDSHYYIHRHANGKPYAAISPNGDGNRDYVQFQGTFLRNAKNLVAEVLDKEGNVVWTSEVTEQVVKNYNNDLASTLGSTRFEKTRWDGKDKDGKVVANGTYTYRVRYTPISSGAKEQHTDFDVIVDNTTLEVATSATFSTEDRRLTLASKPKTSQPIYRERIAYTYMDEDLPTTEYISPNEDGTFTLPEEAETMEGATVPLKMSDFTYVVEDMAGNITYTPVTKLLEGHSNKPEQDGSDQAPDKKPEAKPEQDGSGQTPDKKPETKPEKDSSGQTPGKTPQKGQPSRTLEKRSSKRALATKASARDQLPTTNDKDTNRLHLLKLVMTTFFFGLVAHIFKTKRQKETKK", "sequence_length": 1150, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "539ec61743cba9777c2cee02d1e00d6c7b5f7c0ffad11dde03f049808179cdb6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NZ80.json", "taxon_id": "186103", "uniprot_accession": "Q8NZ80", "uniprot_release": "2026_03" } ], "pfam_id": "PF06280", "short_name": "fn3_5", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06281", "short_name": "VP1_VP3", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06282", "short_name": "DUF1036", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06283", "short_name": "ThuA", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06287", "short_name": "DUF1039", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1040-pf06288.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06288", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1040-pf06288.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/yihd-like-superfamily-ipr038134.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038134", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yihd-like-superfamily-ipr038134.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf1040-1-10-1580-20.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.1580.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf1040-1-10-1580-20.yaml" } ], "pfam_ids": [ "PF06288" ], "protein_name": "Protein YihD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTALLRARGVIKE", "sequence_length": 89, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b974f3b11a82818ab212228bc7afb60e4c0af62418e3287e9099f3da1f9ae5f4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADP9.json", "taxon_id": "83333", "uniprot_accession": "P0ADP9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1040-pf06288.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06288", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1040-pf06288.yaml" } ], "pfam_ids": [ "PF06288" ], "protein_name": "Protein YihD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTALLRARGVIKE", "sequence_length": 89, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b974f3b11a82818ab212228bc7afb60e4c0af62418e3287e9099f3da1f9ae5f4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADQ0.json", "taxon_id": "199310", "uniprot_accession": "P0ADQ0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1040-pf06288.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06288", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1040-pf06288.yaml" } ], "pfam_ids": [ "PF06288" ], "protein_name": "Uncharacterized protein HI_0845", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKCKRLNEVLELLQSYWSKDSDLSLMEILQKIANESGFQKPLNELTDEVIIYQLKMDGTDKYEPIPGLKKDYEEDFKTALLRARGIIK", "sequence_length": 88, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5802e5e7180b8bff00f7249931f00f4e0d201876cb9e552160da4e635bea58a0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44900.json", "taxon_id": "71421", "uniprot_accession": "P44900", "uniprot_release": "2026_03" } ], "pfam_id": "PF06288", "short_name": "DUF1040", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:B2RUP2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00168", "PF06292" ], "protein_name": "Protein unc-13 homolog D", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "5f0159953c1cf614c488e470204caaa10e127b97b817293440b6c4551f0da12a", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MATHLSHPQRRPLLRQAIKIRRRRVRDLQDPPPQATQEVQVQSHHFSPEERDLLYEEALYTVLHRLGQPEPNHVKEASELLSYLQEAFQVQPEEHQQMLRRVRELEKPVFCLKATVKQAKGILGKDVSGFSDPYCLLGIEQKVGVAEGSPVSRRRQKAVVKHTIPEEETHRTQVKSQTLNPVWDETFILEFEDIANASFHLDMWDLDTVESVRQKLGELTDLHGLRRIFKEARKDKGQDDFLGNVVLRLQDLRCREDQWFPLEPCTETYPDRGQCHLQFQFIHKRRATAASRSQPSYTVHFHLLQQLVSHEVTQHQAGSTSWDASLSPQAVTILFLHATQKDLSDFHQSMAQWLAYSRLYQSLEFPSSCLLHPITSIEYQWIQGRLKAEQREELATSFTSLLAYGLSLIRKFRSVFPLSVSDSPSRLQSLLRVLVQMCKMKAFGELCPDSAPLSQLVSEALRMGTVEWFHLMQQHHQPMVQGILEAGKALLNLVQDVMGDLYQCRRTWNKIFHNVLKIDLFSMAFLELQWLVAKRVQDHTVAAGNLVSPDIGESLFQLYVSLKELCQLGPVPSDSREVLALDGFHRWFQPAIPSWLQKTYSVALERVQRAVQMDTLVPLGELTKHSTSAVDLSTCFAQISHTARQLDWPDPEEAFMITVKFVEDTCRLALVYCSLIKARARELSAVQKDQSQAADMLCVVVNNMEQLRLIIDKLPTQLAWEALEQRVGAVLEEGQLQNTLHAQLQGALAGLGHEIRTGVRTLAEQLEVGIATHIQKLIGVKESVLPEDAILPLMKFLEVKLCYMNTNLVQENFSSLLTLLWTHTLTVLVEVASSQRSSSLASGRLKVALQNLEVCFHAEGCGLPPEALHTDTFQALQNDLELQAASSRELIQKYFCSRIQQQAETTSERLGAVTVKVSYRASEQRLRVELLSASSLLPLDSNGSSDPFVQLTLEPRHEFPEVAPRETQKHKKELHPLFDETFEFLVPAEPCQKAWACLLLTVLDHDRLGADDLEGEAFLPLCRVPGLTDCAEPGEAPQMRLPLTYPAPNGDPILRLLESRKGDREAQAFVKLRRQRAKQASQHAP", "sequence_length": 1085, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "5f0159953c1cf614c488e470204caaa10e127b97b817293440b6c4551f0da12a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/B2RUP2.json", "taxon_id": "10090", "uniprot_accession": "B2RUP2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/git1-tpr-like-3rd-pf27826.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27826", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/git1-tpr-like-3rd-pf27826.yaml" } ], "pfam_ids": [ "PF00168", "PF06292", "PF27826" ], "protein_name": "Exocytic regulator ync13", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNCRRKPLPLHSNEVQAAESISKDELYSWTLKNVLILFLVQYRASTPSALQTSSFSTPVEKKTNGAFSGSLFSAKEKKDNPKYPKDFIKYLSLALESISMGKEPEYQDQLIRGCFAAFYNNINKSHISKQLKDSRKIEDMFLIFASSVSSELTKRLGTAYDSNLADRITASFIELCKRVTLKGQLASPSSEFVSHLDMYHSKLLNKSEILSTKRVNRGQDQFDLSSFPLLKVFSSVFKVAYSKALLDAEKLFPSIDEAAIAEDIGILIEDLESDACKFSHSVVDFSNYKSYSTWKARELQTLEQHRKIMLSLIPLSSSPNHPIQPIGFPASRKTPTYVPPIARPYFRQLLSLCLEYRLQVTDPVEVKQINTFIRECSIYWRILPSTRCALSMDFAREHLQKGLITSADVLTHFGELHKSLKEWEITYWPKIDVSIFSSALFGIRNALAQLLKKSLLDLLHEKKADFHRWLNIMSICVEDGKVINQDLSPKSEISSVALALQEHCKVIFDEEFDLSKLPSSNFLDEIILASNRISVRIKFLERNCSECIYGVLSLPQIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLEIYSDLKQMIHVLQEYHNEEYRIGSFEGFFQPFIDSWLDNVEASAEQWFLRSLEKDNFDENSSEGQYSSSIVDLFHAFHQAFRTLEGFEWEDDLANARFFTRFFRVIYIVLSKYTQWTTQKFFEEANKQDDTSEVQNDNSSSWFSKARNILSGSNEVLPFRFSPTMCILLNNIHFAMHAYEELEQKIDLQRLIEALDVAESTKRHKISATNYLYTIKVVRGEGLHPDGAGKIRTSYIVLTDNKGRRIGKTRPIHSMNPRWDDTFEVKTKDALMITANLWSKGKFNDHEIFGRSSFTLSPKIYGDYLPREEWFDLNPHGELLLRIEMEGEREHIGFYVGRTYHDLERAQREMIKFIVNKMEPVINQNLSTATLKKLLSANTWMDLDKTMTSVTSLLNRTGFSSKSSENVKKEGELTDVQIEAAIYELLDYFDLNFSIIAKHLTKDVFVTVMSYVWDEVVCTTEELLLPPVSVKPINRKPLSPAQMAIVYRWLQFLKDYFYANGEGVKLPVLETDHYKELLRVQEYYDKPTDFLLQECDKIASQLYLSSRMVNNEPVESLPRHSRIKFANKEIYRSGTIRKVHIQTNESELERNERIILRILRMRADSKRFLSKHFQRKGRLLMADAMRNGYVMPLGHLKKLDSR", "sequence_length": 1237, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "29092e118f02c7e9093937f27e795ec4a052a5d3af1942418b878b74c279f77e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O13683.json", "taxon_id": "284812", "uniprot_accession": "O13683", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/mun-pf06292.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06292", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/mun-pf06292.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O14795", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00130", "PF00168", "PF06292" ], "protein_name": "Protein unc-13 homolog B", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "fd8c4b94a197cd39cfa6735a6f1fbbe05f8f9ee19b4d40f025e5a4cf14b29ffa", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSLLCVRVKRAKFQGSPDKFNTYVTLKVQNVKSTTVAVRGDQPSWEQDFMFEISRLDLGLSVEVWNKGLIWDTMVGTVWIALKTIRQSDEEGPGEWSTLEAETLMKDDEICGTRNPTPHKILLDTRFELPFDIPEEEARYWTYKWEQINALGADNEYSSQEESQRKPLPTAAAQCSFEDPDSAVDDRDSDYRSETSNSFPPPYHTASQPNASVHQFPVPVRSPQQLLLQGSSRDSCNDSMQSYDLDYPERRAISPTSSSRYGSSCNVSQGSSQLSELDQYHEQDDDHRETDSIHSCHSSHSLSRDGQAGFGEQEKPLEVTGQAEKEAACEPKEMKEDATTHPPPDLVLQKDHFLGPQESFPEENASSPFTQARAHWIRAVTKVRLQLQEIPDDGDPSLPQWLPEGPAGGLYGIDSMPDLRRKKPLPLVSDLSLVQSRKAGITSAMATRTSLKDEELKSHVYKKTLQALIYPISCTTPHNFEVWTATTPTYCYECEGLLWGIARQGMRCSECGVKCHEKCQDLLNADCLQRAAEKSCKHGAEDRTQNIIMAMKDRMKIRERNKPEIFEVIRDVFTVNKAAHVQQMKTVKQSVLDGTSKWSAKITITVVCAQGLQAKDKTGSSDPYVTVQVSKTKKRTKTIFGNLNPVWEEKFHFECHNSSDRIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLQISVEIKGEEKVAPYHVQYTCLHENLFHYLTDIQGSGGVRIPEARGDDAWKVYFDETAQEIVDEFAMRYGIESIYQAMTHFACLSSKYMCPGVPAVMSTLLANINAYYAHTTASTNVSASDRFAASNFGKERFVKLLDQLHNSLRIDLSTYRNNFPAGSPERLQDLKSTVDLLTSITFFRMKVQELQSPPRASQVVKDCVKACLNSTYEYIFNNCHDLYSRQYQLKQELPPEEQGPSIRNLDFWPKLITLIVSIIEEDKNSYTPVLNQFPQELNVGKVSAEVMWHLFAQDMKYALEEHEKDHLCKSADYMNLHFKVKWLHNEYVRDLPVLQGQVPEYPAWFEQFVLQWLDENEDVSLEFLRGALERDKKDGFQQTSEHALFSCSVVDVFTQLNQSFEIIRKLECPDPSILAHYMRRFAKTIGKVLMQYADILSKDFPAYCTKEKLPCILMNNVQQLRVQLEKMFEAMGGKELDLEAADSLKELQVKLNTVLDELSMVFGNSFQVRIDECVRQMADILGQVRGTGNASPDARASAAQDADSVLRPLMDFLDGNLTLFATVCEKTVLKRVLKELWRVVMNTMERMIVLPPLTDQTGTQLIFTAAKELSHLSKLKDHMVREETRNLTPKQCAVLDLALDTIKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTLIKTFVRSQTTQGSGVDDPVGEVSIQVDLFTHPGTGEHKVTVKVVAANDLKWQTAGMFRPFVEVTMVGPHQSDKKRKFTTKSKSNNWAPKYNETFHFLLGNEEGPESYELQICVKDYCFAREDRVLGLAVMPLRDVTAKGSCACWCPLGRKIHMDETGLTILRILSQRSNDEVAREFVKLKSESRSTEEGS", "sequence_length": 1591, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "fd8c4b94a197cd39cfa6735a6f1fbbe05f8f9ee19b4d40f025e5a4cf14b29ffa", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O14795.json", "taxon_id": "9606", "uniprot_accession": "O14795", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/mun-pf06292.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06292", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/mun-pf06292.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O94812", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00168", "PF06292" ], "protein_name": "BAI1-associated protein 3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "fc469288a19167da8c235ec50af20a6d0c2af5529b759f5786722592bdf46058", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRPRGAAFAAGPPGDLHLGTAIGFAGAIWRSRSPAMSTLLDIKSSVLRQVQVCPSFRRRTEQDPGSASADPQEPATGAWKPGDGVEFFAHMRLMLKKGEGRQGLPCLEVPLRSGSPAPPEPVDPSLGLRALAPEEVEMLYEEALYTVLYRAGTMGPDQVDDEEALLSYLQQVFGTSLEEHTEAIERVRKAKAPTYALKVSVMRAKNLLAKDPNGFSDPYCMLGILPASDATREPRAQKEQRFGFRKGSKRGGPLPAKCIQVTEVKSSTLNPVWKEHFLFEIEDVSTDQLHLDIWDHDDDVSLVEACRKLNEVIGLKGMGRYFKQIVKSARANGTAGPTEDHTDDFLGCLNIPVREVPVAGVDRWFKLEPRSSASRVQGHCHLVLKLITTQRDTAMSQRGRSGFLSHLLLLSHLLRLEHSAEEPNSSSWRGELSTPAATILCLHGAQSNLSPLQLAVLHWQVSSRHHQTCTLDYSYLLGLLEDMQAHWEEAPSLPQEQEESLADSLSAFSEFGLQLLRQLRDYFPATNSTAVHRLELLLKCLGKLQLFQPSFEICPFESELNMDIAAALKRGNREWYDRILNDKSPREQPGPQRLPGLVVLADAVYDDLQFCYSVYASLFHSILNVDVFTLTFRQLERLVAEEAWVLTEELSPKMTLEVASGLFELYLTLADLQRFWDSIPGRDSRSLALAGIHAPFLPAVKLWFQVLRDQAKWRLQGAVDMDTLEPVDASSRHSSSAATAGLCLSHIQELWVRLAWPDPAQAQGLGTQLGQDVCEATLFYTELLRKKVDTQPGAAGEAVSEALCVVLNNVELVRKAAGQALKGLAWPEGATGPEGVLPRPLLSCTQALDDDLQREAHTVTAHLTSKMVGDIRKYVQHISLSPDSIQNDEAVAPLMKYLDEKLALLNASLVKGNLSRVLEALWELLLQAILQALGANRDVSADFYSRFHFTLEALVSFFHAEGQGLPLESLRDGSYKRLKEELRLHKCSTRECIEQFYLDKLKQRTLEQNRFGRLSVRCHYEAAEQRLAVEVLHAADLLPLDANGLSDPFVIVELGPPHLFPLVRSQRTQVKTRTLHPVYDELFYFSVPAEACRRRAACVLFTVMDHDWLSTNDFAGEAALGLGGVTGVARPQVGGGARAGQPVTLHLCRPRAQVRSALRRLEGRTSKEAQEFVKKLKELEKCMEADP", "sequence_length": 1187, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "fc469288a19167da8c235ec50af20a6d0c2af5529b759f5786722592bdf46058", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O94812.json", "taxon_id": "9606", "uniprot_accession": "O94812", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c2-caps-pf25341.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25341", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c2-caps-pf25341.yaml" } ], "pfam_ids": [ "PF00169", "PF06292", "PF25341" ], "protein_name": "Calcium-dependent secretion activator 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDPSSSEEESDEILEEERGKDVLGSAASGARLSPSRTSEGSAGSAGMGGSGAGAGVGAGGGGGSGASSGGGAGGLQPSSRAGGGRPSSPSPSVVSEKEKEELERLQKEEEERKKRLQLYVFVMRCIAYPFNAKQPTDMARRQQKISKQQLQTVKDRFQAFLNGETQIVADEAFMNAVQSYYEVFLKSDRVARMVQSGGCSANDSREVFKKHIEKRVRSLPEIDGLSKETVLSSWMAKFDAIYRGEEDPRKQQARMTASAASELILSKEQLYEMFQNILGIKKFEHQLLYNACQLDNPDEQAAQIRRELDGRLQMADQIARERKFPKFVSKEMENMYIEELKSSVNLLMANLESMPVSKGGEFKLQKLKRSHNASIIDMGEESENQLSKSDVLLSFSLEVVIMEVQGLKSLAPNRIVYCTMEVEGGEKLQTDQAEASKPTWGTQGDFSTTHALPAVKVKLFTESTGVLALEDKELGRVILHPTPNSPKQSEWHKMTVSKNCPDQDLKIKLAVRMDKPQNMKHSGYLWTIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQVQKLNAKGGNVPQLDAPISQFSGLKDADRAQKHGMDEFISSNPCNFDHASLFEMVQRLTLDHRLNDSYSCLGWFSPGQVFVLDEYCARNGVRGCHRHLCYLRDLLERAENGAMIDPTLLHYSFAFCASHVHGNRPDGIGTVTVEEKERFEEIKERLRVLLENQITHFRYCFPFGRPEGALKATLSLLERVLMKDIVTPVPQEEVKTVIRKCLEQAALVNYSRLSEYAKIEENQKDAENVGRLITPAKKLEDTIRLAELVIEVLQQNEEHHAEPHVDKGEAFAWWSDLMVEHAETFLSLFAVDMDAALEVQPPDTWDSFPLFQLLNDFLRTDYNLCNGKFHKHLQDLFAPLVVRYVDLMESSIAQSIHRGFERESWEPVKSLTSNLPNVNLPNVNLPKVPNLPVNIPLGIPQMPTFSAPSWMAAIYDADNGSGTSEDLFWKLDALQTFIRDLHWPEEEFGKHLEQRLKLMASDMIESCVKRTRIAFEVKLQKTSRSTDFRVPQSICTMFNVMVDAKAQSTKLCSMEMGQEHQYHSKIDELIEETVKEMITLLVAKFVTILEGVLAKLSRYDEGTLFSSFLSFTVKAASKYVDVPKPGMDVADAYVTFVRHSQDVLRDKVNEEMYIERLFDQWYNSSMNIICTWLTDRMDLQLHIYQLKTLIRMVKKTYRDFRLQGVLDSTLNSKTYETIRNRLTVEEATASVSEGGGLQGISMKDSDEEDEEDD", "sequence_length": 1355, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bd1e59ecae0784248e20e59c4180117da7d5e49d375343cae2a71abb48a9669a", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q80TJ1.json", "taxon_id": "10090", "uniprot_accession": "Q80TJ1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c2-caps-pf25341.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25341", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c2-caps-pf25341.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q86UW7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00169", "PF06292", "PF25341" ], "protein_name": "Calcium-dependent secretion activator 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1775abc2fcedfa7118a162937cb360fdbb512167e2ec4818c628bd2858ec3d05", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLDPSSSEEESDEGLEEESRDVLVAAGSSQRAPPAPTREGRRDAPGRAGGGGAARSVSPSPSVLSEGRDEPQRQLDDEQERRIRLQLYVFVVRCIAYPFNAKQPTDMARRQQKLNKQQLQLLKERFQAFLNGETQIVADEAFCNAVRSYYEVFLKSDRVARMVQSGGCSANDFREVFKKNIEKRVRSLPEIDGLSKETVLSSWIAKYDAIYRGEEDLCKQPNRMALSAVSELILSKEQLYEMFQQILGIKKLEHQLLYNACQLDNADEQAAQIRRELDGRLQLADKMAKERKFPKFIAKDMENMYIEELRSSVNLLMANLESLPVSKGGPEFKLQKLKRSQNSAFLDIGDENEIQLSKSDVVLSFTLEIVIMEVQGLKSVAPNRIVYCTMEVEGEKLQTDQAEASRPQWGTQGDFTTTHPRPVVKVKLFTESTGVLALEDKELGRVILYPTSNSSKSAELHRMVVPKNSQDSDLKIKLAVRMDKPAHMKHSGYLYALGQKVWKRWKKRYFVLVQVSQYTFAMCSYREKKSEPQELMQLEGYTVDYTDPHPGLQGGCMFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSYKPVPAIQTQKLNPKGGTLHADAQLSGKDADRFQKHGMDEFISANPCKLDHAFLFRILQRQTLDHRLNDSYSCLGWFSPGQVFVLDEYCARYGVRGCHRHLCYLAELMEHSENGAVIDPTLLHYSFAFCASHVHGNRPDGIGTVSVEEKERFEEIKERLSSLLENQISHFRYCFPFGRPEGALKATLSLLERVLMKDIATPIPAEEVKKVVRKCLEKAALINYTRLTEYAKIEETMNQASPARKLEEILHLAELCIEVLQQNEEHHAEGREAFAWWPDLLAEHAEKFWALFTVDMDTALEAQPQDSWDSFPLFQLLNNFLRNDTLLCNGKFHKHLQEIFVPLVVRYVDLMESSIAQSIHRGFEQETWQPVKNIANSLPNVALPKVPSLPLNLPQIPNISTASWMPSLYESTNGSATSEDLFWKLDALQMFVFDLHWPEQEFAHHLEQRLKLMASDMLEACVKRTRTAFELKLQKASKTTDLRIPASVCTMFNVLVDAKKQSTKLCALDGGQEQQYHSKIDDLIDNSVKEIISLLVSKFVSVLEGVLSKLSRYDEGTFFSSILSFTVKAAAKYVDVPKPGMDLADTYIMFVRQNQDILREKVNEEMYIEKLFDQWYSSSMKVICVWLTDRLDLQLHIYQLKTLIKIVKKTYRDFRLQGVLEGTLNSKTYDTVHRRLTVEEATASVSEGGGLQGITMKDSDEEEEG", "sequence_length": 1296, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "1775abc2fcedfa7118a162937cb360fdbb512167e2ec4818c628bd2858ec3d05", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q86UW7.json", "taxon_id": "9606", "uniprot_accession": "Q86UW7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c2-caps-pf25341.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25341", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c2-caps-pf25341.yaml" } ], "pfam_ids": [ "PF00169", "PF06292", "PF25341" ], "protein_name": "Calcium-dependent secretion activator 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDPSSSEEESDEIVEEESGKEVLGSAPSGARLSPSRTSEGSAGSAGLGGGGAGAGAGVGAGGGGGSGASSGGGAGGLQPSSRAGGGRPSSPSPSVVSEKEKEELERLQKEEEERKKRLQLYVFVMRCIAYPFNAKQPTDMARRQQKISKQQLQTVKDRFQAFLNGETQIMADEAFMNAVQSYYEVFLKSDRVARMVQSGGCSANDSREVFKKHIEKRVRSLPEIDGLSKETVLSSWMAKFDAIYRGEEDPRKQQARMTASAASELILSKEQLYEMFQNILGIKKFEHQLLYNACQLDNPDEQAAQIRRELDGRLQMADQIARERKFPKFVSKEMENMYIEELKSSVNLLMANLESMPVSKGGEFKLQKLKRSHNASIIDMGEESENQLSKSDVVLSFSLEVVIMEVQGLKSLAPNRIVYCTMEVEGGEKLQTDQAEASKPTWGTQGDFSTTHALPAVKVKLFTESTGVLALEDKELGRVILHPTPNSPKQSEWHKMTVSKNCPDQDLKIKLAVRMDKPQNMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQVQKLNAKGGNVPQLDAPISQFYADRAQKHGMDEFISSNPCNFDHASLFEMVQRLTLDHRLNDSYSCLGWFSPGQVFVLDEYCARNGVRGCHRHLCYLRDLLERAENGAMIDPTLLHYSFAFCASHVHGNRPDGIGTVTVEEKERFEEIKERLRVLLENQITHFRYCFPFGRPEGALKATLSLLERVLMKDIVTPVPQEEVKTVIRKCLEQAALVNYSRLSEYAKIEENQKDAENVGRLITPAKKLEDTIRLAELVIEVLQQNEEHHAEPHVDKGEAFAWWSDLMVEHAETFLSLFAVDMDAALEVQPPDTWDSFPLFQLLNDFLRTDYNLCNGKFHKHLQDLFAPLVVRYVDLMESSIAQSIHRGFERESWEPVKSLTSNLPNVNLPNVNLPKVPNLPVNIPLGIPQMPTFSAPSWMAAIYDADNGSGTSEDLFWKLDALQTFIRDLHWPEEEFGKHLEQRLKLMASDMIESCVKRTRIAFEVKLQKTSRSTDFRVPQSICTMFNVMVDAKAQSTKLCSMEMGQEHQYHSKIDELIEETVKEMITLLVAKFVTILEGVLAKLSRYDEGTLFSSFLSFTVKAASKYVDVPKPGMDVADAYVTFVRHSQDVLRDKVNEEMYIERLFDQWYNSSMNVICTWLTDRMDLQLHIYQLKTLIRMVKKTYRDFRLQGVLDSTLNSKTYETIRNRLTVEEATASVSEGGGLQGISMKDSDEEDEEDD", "sequence_length": 1353, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d2c9248d2eaf8d503a11fd26512a7efc1fefa09d44075411a30e0b3b88b607a1", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ULU8.json", "taxon_id": "9606", "uniprot_accession": "Q9ULU8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/mun-pf06292.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06292", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/mun-pf06292.yaml" } ], "pfam_ids": [ "PF00130", "PF00168", "PF06292" ], "protein_name": "Protein unc-13 homolog A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQVIMADSEICGTKDPTFHRILLDTRFELPLDIPEEEARYWAKKLEQLNAMRDQDEYSFQDEQDKPLPVPSNQCCNWNYFGWGEQHNDDPDSAVDDRDSDYRSETSNSIPPPYYTTSQPNASVHQYSVRPPPLGSRESYSDSMHSYEEFSEPQALSPTGSSRYASSGELSQGSSQLSEDFDPDEHSLQGSDMEDERDRDSYHSCHSSVSYHKDSPRWDQDEEELEEDLEDFLEEEELPEDEEELEEEEEEVPDDLGSYAQREDVAVAEPKDFKRISLPPAAPGKEDKAPVAPTEAPDMAKVAPKPATPDKVPAAEQIPEAEPPKDEESFRPREDEEGQEGQDSMSRAKANWLRAFNKVRMQLQEARGEGEMSKSLWFKGGPGGGLIIIDSMPDIRKRKPIPLVSDLAMSLVQSRKAGITSALASSTLNNEELKNHVYKKTLQALIYPISCTTPHNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLNADCLQRAAEKSSKHGAEDRTQNIIMVLKDRMKIRERNKPEIFELIQEIFAVTKTAHTQQMKAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGAIRLHISVEIKGEEKVAPYHVQYTCLHENLFHFVTDVQNNGVVKIPDAKGDDAWKVYYDETAQEIVDEFAMRYGVESIYQAMTHFACLSSKYMCPGVPAVMSTLLANINAYYAHTTASTNVSASDRFAASNFGKERFVKLLDQLHNSLRIDLSMYRNNFPASSPERLQDLKSTVDLLTSITFFRMKVQELQSPPRASQVVKDCVKACLNSTYEYIFNNCHELYSREYQTDPAKKGEVLPEEQGPSIKNLDFWSKLITLIVSIIEEDKNSYTPCLNQFPQELNVGKISAEVMWNLFAQDMKYAMEEHDKHRLCKSADYMNLHFKVKWLYNEYVTELPAFKDRVPEYPAWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVGHYMRRFAKTISNVLLQYADIISKDFASYCSKEKEKVPCILMNNTQQLRVQLEKMFEAMGGKELDAEASDILKELQVKLNNVLDELSRVFATSFQPHIEECVKQMGDILSQVKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMEKTIVLPPLTDQTMIGNLLRKHGKGLEKGRVKLPSHSDGTQMIFNAAKELGQLSKLKDHMVREEAKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIKTFVQTQSAQGLGVEDPVGEVSVHVELFTHPGTGEHKVTVKVVAANDLKWQTSGIFRPFIEVNIIGPQLSDKKRKFATKSKNNSWAPKYNESFQFTLSADAGPECYELQVCVKDYCFAREDRTVGLAVLQLRELAQRGSAACWLPLGRRIHMDDTGLTVLRILSQRSNDEVAKEFVKLKSDTRSAEEGGAAPAP", "sequence_length": 1703, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "73715cd1e630eac057f3c982558e76ad43849044f5cf5fab1eba0300ffd8bb06", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UPW8.json", "taxon_id": "9606", "uniprot_accession": "Q9UPW8", "uniprot_release": "2026_03" } ], "pfam_id": "PF06292", "short_name": "MUN", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mucociliary-clearance-go0120197.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0120197", "section": "canonical_examples", "url": 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"data/traits/sequence/domain/interpro/cpc1-spef2-domain-d5-ipr054517.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR054517", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cpc1-spef2-domain-d5-ipr054517.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spef2-c-terminal-domain-ipr056199.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056199", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spef2-c-terminal-domain-ipr056199.yaml" }, { "cited_uniprot_accession": "", "commit": 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"data/traits/function/pathway/go/cellular-response-to-morphine-go0071315.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071315", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cellular-response-to-morphine-go0071315.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-long-term-synaptic-depression-go1900454.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1900454", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-long-term-synaptic-depression-go1900454.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/adenylyl-cyclase-class-4-guanylyl-cyclase-conserved-site-ipr018297.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/adenylyl-cyclase-class-4-guanylyl-cyclase-conserved-site-ipr018297.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/adenylate-cyclase-conserved-domain-ipr009398.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009398", "section": "canonical_examples", "url": 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"MELSDVHCLSGSEELYTIQPTPPAGDDGSGSRPQRLLWQTAVRHITEQRFIHGHRGGGGGGVSRKASNPAGSGPNHHAPQLSSDSVLPLYSLGPGERAHNTGGTKVFPERSGSGSASGSGGGGDLGFLHLDCAPSNSDFFLNGGYSYRGVIFPTLRNSFKSRDLERLYQRYFLGQRRKSEVVMNVLDVLTKLTLLVLHLSLASAPMDPLKGILLGFFTGIEVVICALVVVRKDNTSHTYLQYSGVVTWVAMTTQILAAGLGYGLLGDGIGYVLFTLFATYSMLPLPLTWAILAGLGTSLLQVTLQVLIPRLAVFSINQVLAQVVLFMCMNTAGIFISYLSDRAQRQAFLETRRCVEARLRLETENQRQERLVLSVLPRFVVLEMINDMTNVEDEHLQHQFHRIYIHRYENVSILFADVKGFTNLSTTLSAQELVRMLNELFARFDRLAHEHHCLRIKILGDCYYCVSGLPEPRRDHAHCCVEMGLSMIKTIRFVRSRTKHDVDMRIGIHSGSVLCGVLGLRKWQFDVWSWDVDIANKLESGGIPGRIHISKATLDCLNGDYNVEEGHGKERNEFLRKHNIETYLIKQPEESLLCLPEDIVKESVSCSDRRNSGATFTEGSWSPELPFDNIVGKQNTLAALTRNSINLLPNHLAQALHVQSGPEEINKRIEHTIDLRSGDKLRREHIKPFSLMFKDSSLEHKYSQMRDEVFKSNLVCAFIVLLFITAIQSLLPSSRLMPMTIQFSILIMLHSALVLITTAEDYKCLPLILRKTCCWINETYLARNVIIFASILINFLGAVLNILWCDFDKSIPLKNLTFNSSAVFTDICSYPEYFVFTGVLAMVTCAVFLRLNSVLKLAVLLIMIAIYALLTETIYAGLFLSYDNLNHSGEDFLGTKEASLLLMAMFLLAVFYHGQQLEYTARLDFLWRVQAKEEINEMKELREHNENMLRNILPSHVARHFLEKDRDNEELYSQSYDAVGVMFASIPGFADFYSQTEMNNQGVECLRLLNEIIADFDELLGEDRFQDIEKIKTIGSTYMAVSGLSPEKQQCEDKWGHLCALADFSLALTESIQEINKHSFNNFELRIGISHGSVVAGVIGAKKPQYDIWGKTVNLASRMDSTGVSGRIQVPEETYLILKDQGFAFDYRGEIYVKGISEQEGKIKTYFLLGRVQPNPFILPPRRLPGQYSLAAVVLGLVQSLNRQRQKQLLNENSNSGIIKSHYNRRTLLTPSGPEPGAQAEGTDKSDLP", 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"sequence_length": 1165, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "66b869a92e04e272eeaf346e9a0cb33983f97801271dbfb3fd44df84508c42e0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q01341.json", "taxon_id": "10090", "uniprot_accession": "Q01341", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/adenylate-cyclase-conserved-domain-ipr009398.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/adenylate-cyclase-conserved-domain-ipr009398.yaml" } ], "pfam_ids": [ "PF00211", "PF06327", "PF16214" ], "protein_name": "Adenylate cyclase type 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWQEAMRRRRYLRDRSEEAAGGGDGLPRSRDWLYESYYCMSQQHPLIVFLLLIVMGSCLALLAVFFALGLEVEDHVAFLITVPTALAIFFAIFILVCIESVFKKLLRLFSLVIWICLVAMGYLFMCFGGTVSPWDQVSFFLFIIFVVYTMLPFNMRDAIIASVLTSSSHTIVLSVCLSATPGGKEHLVWQILANVIIFICGNLAGAYHKHLMELALQQTYQDTCNCIKSRIKLEFEKRQQERLLLSLLPAHIAMEMKAEIIQRLQGPKAGQMENTNNFHNLYVKRHTNVSILYADIVGFTRLASDCSPGELVHMLNELFGKFDQIAKENECMRIKILGDCYYCVSGLPISLPNHAKNCVKMGLDMCEAIKKVRDATGVDINMRVGVHSGNVLCGVIGLQKWQYDVWSHDVTLANHMEAGGVPGRVHISSVTLEHLNGAYKVEEGDGDIRDPYLKQHLVKTYFVINPKGERRSPQHLFRPRHTLDGAKMRASVRMTRYLESWGAAKPFAHLHHRDSMTTENGKISTTDVPMGQHNFQNRTLRTKSQKKRFEEELNERMIQAIDGINAQKQWLKSEDIQRISLLFYNKVLEKEYRATALPAFKYYVTCACLIFFCIFIVQILVLPKTSVLGISFGAAFLLLAFILFVCFAGQLLQCSKKASPLLMWLLKSSGIIANRPWPRISLTIITTAIILMMAVFNMFFLSDSEETIPPTANTTNTSFSASNNQVAILRAQNLFFLPYFIYSCILGLISCSVFLRVNYELKMLIMMVALVGYNTILLHTHAHVLGDYSQVLFERPGIWKDLKTMGSVSLSIFFITLLVLGRQNEYYCRLDFLWKNKFKKEREEIETMENLNRVLLENVLPAHVAEHFLARSLKNEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAVPSQEHSQEPERQYMHIGTMVEFAFALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLVLQTLGYTCTCRGIINVKGKGDLKTYFVNTEMSRSLSQSNVAS", "sequence_length": 1091, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8a191c8a7a16c2589e7dcd82eb48115d5c90cf24e6d5a2addfe2bde3246ca1c1", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/Q08462.json", "taxon_id": "9606", "uniprot_accession": "Q08462", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/detection-of-chemical-stimulus-involved-in-sensory-perception-of-sweet-taste-go0001582.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0001582", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/detection-of-chemical-stimulus-involved-in-sensory-perception-of-sweet-taste-go0001582.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/response-to-trehalose-go0010353.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010353", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/response-to-trehalose-go0010353.yaml" } ], "pfam_ids": [ "PF00211", "PF06327", "PF16214" ], "protein_name": "Adenylyl cyclase 78C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVELEEEEERICLRTAEEGQLANMDDDKLVSDEVHLRQLSATPSSAFSLQHSRGSDTKEEAPPEGGTMGGKSAAPREEGEPDERVVLRRAVDKGAIALAQIDDLKLEGDDDDEAVVNGEEVDGLGLSNPAAQTTDDEQITVNGTGAAATSSVAADAASSEQDAASTAMATPDMSKIPRLPGDGAQMEDNGSGDLPPSLRASTTSILSNLRKKQQGGPLRGGVAKQTPLRVQSVRIVEAKRAYGPKRRTESCSIFGNSNFEHDLESGNSLASIPGQSQRPLNNEMYSAFKSGNVVKGILCPSLTNSFKQSSLERSYLTYTHRQRQKSLIIVNVVDFVLKIVLAFVWIMRRSELGPIESDDGTSMATAITWSVCCGIANMAICFLGYWRCFANNYLHWAAVCTWVLFNIQGFVGQGVGFADREYLVWYILFVIFVPYAMLPLPLKWCVVGGTITASCHLAVITIIKLQHGEATINPECVLFQIFANFILYTAINVAGMYTKYLTDRGQRLAFIETHKAMEHKKESEKELQRTQKLLDSILPNIVNNQIRSEMYKGTDPTVETQFNKLYVYPMDNVSILFADIKGFTELASKTSAQQLVKILNDLFARFDRIAEDNHCLRVKLLGDCYYCVSQFESDNWKTRPDHAVCSVETGLHMIKAIKDVRLHTHVDLNMRIGIHSGSVMCGVLGNKKWHFDVWSNDVIIANHMESGGIPGRVHISEATLKCLNDAYEVEPGNGGCRDNHLKMLNVKTYLIKRTEPLRPKRRFGTRSSAHLAGSVATAAPPCATPTALPKSISASGSGSIGGVTATGNDGASIDGRSLEYAATIAVPAQQPTQLLQQQQKKNISLNSLPNVVEGVAMDSRRIRNGCGVMGGAGGTGGGGTGPCGMSTVSSPTAMMSAPLEVQLRPRNGACSIQNLAEAIDGKGLIIEDESTTDWIPEIPFKNLNSPEDGLNRADSILVDTKEDHRVSVAVLDEEIDEFIEQNIQINSNKEIRREYLNPWTLKFKDKSQEQKFCQLREDMFRSNMLCVFVIWIFMVLCQVIIIPRCTRLIICLSVGTVILTFCCVLVMAEEFPGLPRCLKTNSAKLVHQRQRRTLFICGVIVSMCMLSAIGLVLCPSSTYIGTADEHSRFLRMVSPYSNISMTEKEFKLNVYLSATIHHNITISTPASGGPTPLVDITSSGPSDEFVRSTLNALTLNLTPPLPQSHRPYTLTTNGHSVSLSNLSYSDASVMQSSSDVEGQCAHPEYLVFTWVLCLVSLATALKLYYLVKALMALAMVAFYTTLIMMKFGSGDSFSLVELSRLGMPLGVQMLILLISFLVMVCYHARLVEVTSRLDFIWKEQAERELTNMKSNRALNDTLIKNILPDHVATYYLSDEHTDELYSKMHNLCGVMFASIPNFQDFYSEDIDNGKACIRILNEIICDFDELLEEPRFASVEKIKTVGATYMAAAGLNHEHLRLRGETSEDSVCDLVEFAFAMKQKLEEINGDAFNNFQLRVGICSGPLVSGVIGARKPVYDIWGNTVNVASRMDSTGENWRVQVPENTAELLCSRGYTCVKRGEIAVKGKGMMTTFYVHPKGISESQLISPVRMPAGIPLAQTPNLQRQTSHHGSFSAVVFGMLQASKRSTAIAGTPTGTPSPQIRRGHRGSTFSSVRLSQKSTTVNPVRRNTTRVRGRSYRQKKSSSNNSIVTQASSSYMPSFRRIDQIETTISKSHNDAL", "sequence_length": 1718, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4d40d1a24c1d7db27042837f0cea50b32b6b1ed68fb8353298ce7018aeae68dc", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VP76.json", "taxon_id": "7227", "uniprot_accession": "Q9VP76", "uniprot_release": "2026_03" } ], "pfam_id": "PF06327", "short_name": "Adcy_cons_dom", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lysinibacillus sphaericus (strain C3-41)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1054-pf06335.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06335", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1054-pf06335.yaml" } ], "pfam_ids": [ "PF06335" ], "protein_name": "UPF0637 protein Bsph_1379", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKIKWTNKDFNVFKIDGLEQRMNALNDHVRPKFHQLGDDFATYFSSKLGEEFFPHVAKHARRTVNPPQDSWVAFAPYKRGYKSLPHFQIGLWHSHLFIVLAIIYEAPQKNVMAERLLAHPSLFEQLSDDFIVSGDHMSPEAISLEEAKEDKLKELLLRLRDVKKGEFLIGRHIPKDQATKLTASEFHQLTEQTFNSLLPFYNVIVGKDLK", "sequence_length": 211, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "515275f4d160dfaf1df787bbf7f5faffdbc4bef38eb220631577d4264d8b0473", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/B1HPT5.json", "taxon_id": "444177", "uniprot_accession": "B1HPT5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Exiguobacterium artemiae (strain DSM 17290 / CCUG 55495 / CIP 109462 / JCM 13490 / 255-15)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1054-pf06335.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06335", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1054-pf06335.yaml" } ], "pfam_ids": [ "PF06335" ], "protein_name": "UPF0637 protein Exig_2520", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTHFTKEAFDTFEIEGLEQRMDAIRERIQPVFKQIGQEVSPDLTVNLAEDMYVHIAQHARRKVNPPKDTWMAFSPNKRGYKKHPHFQVGLFDDHLFIWLAYIYELPNKSQYATKLLNHQELLHALPSDFVVSYDHMKKEAQQIDETGLEQGLVRFRDVKKAEFLVGRHVSAEEVSAMSHEDLVKLIRNTYEQLVPIYKKIQ", "sequence_length": 202, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ed4bb071dc0bdb603f9001fedac135f0a5c923c37bea9310435eb009d2309537", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B1YM12.json", "taxon_id": "262543", "uniprot_accession": "B1YM12", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1054-pf06335.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06335", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1054-pf06335.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/upf0637-domain-containing-protein-ipr053707.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053707", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/upf0637-domain-containing-protein-ipr053707.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf1054-3-30-930-20.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.930.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf1054-3-30-930-20.yaml" } ], "pfam_ids": [ "PF06335" ], "protein_name": "UPF0637 protein YktB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTQMRFTEEDFNTFTIEGLDARMEVLKETVRPKLTALGEHFAPTLSALTGDEMFPHVAKHARRSVNPPADSWVAFANSKRGYKKLPHFQIGLWESHVFVWFAIIYESPIKEEYGKLLEVNQETITKNIPDSFVWSADHTKPGVHKQSEMDKEQLKTLFERLQTVKKAELLCGIQLQKEEVLNMNNQEFLQRIDDAFKQLAFLYRLTQKVTQA", "sequence_length": 212, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ed6c79ed30c728c3a28c732ed9659c5689aea0038573bf80bdfcd784a3a53a1f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q45498.json", "taxon_id": "224308", "uniprot_accession": "Q45498", "uniprot_release": "2026_03" } ], "pfam_id": "PF06335", "short_name": "DUF1054", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O22207", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00443", "PF06337", "PF25242" ], "protein_name": "Ubiquitin carboxyl-terminal hydrolase 5", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7973c7225a3f76c3463143248310f90016ba38284ebccba04be19461a76a7b5f", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAEVSMGSSSSSTDLSPEEERVFIRDIAIAAEANSKEGDTFYLITQRWWQEWIEYVNQDQPCNTNDGSSLSEHCDSPGSSTLKKPSRIDNSDLIYDSSLEDPSNTSEIIETLQEGRDYVLLPQEVWNQLRSWYGGGPTLARRVISSGLSQTELAVEVYPLRLQLLLMPKSDHSAIRISKKETIRELHRRACEIFDLDSEHVRIWDYYGHQKYSLMNDLDKTLDDANLQMDQDILVEVLDINGTLSSAHIQSAQENGLVDGDSTSILIEPSKSSLAAAGGFSSSRNAFRTGSVEVSQSFDNTYSSTGVTTRGSTAGLTGLLNLGNTCFMNSAIQCLVHTPEFASYFQEDYHQEINWQNPLGMVGELALAFGDLLRKLWAPGRTPIAPRPFKAKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYINSRDADGRPDEEVADEFWKNHIARNDSIIVDVCQGQYKSTLVCPICNKVSVTFDPFMYLSLPLQFNTTRAITVTVFSCDKTALPSTITVNVSKQGRCRDLIQALTNACSLKQSEELKLAEIRNNFIHRLFEDPLIPLSSIKDDDHLAAYKLSKSSENTTLLRLVLRRRDQKAGERESTVQLKPCGTPLLSSASCGDALTKGKIHCLVQNMLSPFRREESVGKKGNSDSSIPERRSARFNNTEEEDKVGGLKKAKKSNSSDLGASKLSLQLIDEDNKTINLPDNEAEAMKLPSSATVTIYLDWTPELSGMYDITCLESLPEVLKYGPTTKKARSEPLSLYACLEAFLREEPLVPDEMWFCPQCNERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDLDLTKYVANKNLSQPQLYELYALTNHYGGMGSGHYTAHIKLLDDSRWYNFDDSHISHINEDDVKSGAAYVLFYRRKSDAGGKMT", "sequence_length": 924, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7973c7225a3f76c3463143248310f90016ba38284ebccba04be19461a76a7b5f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O22207.json", "taxon_id": "3702", "uniprot_accession": "O22207", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P35123", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00443", "PF06337", "PF14836" ], "protein_name": "Ubiquitin carboxyl-terminal hydrolase 4", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "5a616dbb1245bcf9b069f9b21aaccbb435e061d0d36f476ab93e26b2e74c35fd", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAEGRGSRERPDVETQKTELGALMGTTLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVGEHNLFPGPIDNSGLFSDPESQTLKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTWPRQSLQSKSSTAPSRNFTTSSKPSASPYCSVSASLIANGDSTNSSGMHSSGVSRGGSGFSASYNCQEPPSPHIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPQCRPIQYRVTVPLMGAISDLCEALSKLSGIAAENMVVTDVYNHRFHKIFQMDEGLSHITPRDDIFVYEVCNTSMDGSECITLPVYFREKKSRPSSASSGAVLYGQPLLVSVPKHKLTLESLYQAVCDRISRYIKQPLPDEFLSSPLEPGACNGSRSSYEGDEEEEMDHQEEGKEQLSEVEGSGEDDQGDDHSESAQKVKGQPRHKRLFTFSLVNSCGTADINSLATDGKLLKLNSRSTLAIDWDSETRSLYFDEQESEACEKHLSMSQPQKKKKAAVALRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVCDRSARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQRRDDECSSTSSLGSFPGSDGGVKLSSSHQGMGDEEAYNMDTN", "sequence_length": 962, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "5a616dbb1245bcf9b069f9b21aaccbb435e061d0d36f476ab93e26b2e74c35fd", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P35123.json", "taxon_id": "10090", "uniprot_accession": "P35123", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dusp-pf06337.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06337", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dusp-pf06337.yaml" } ], "pfam_ids": [ "PF00443", "PF06337" ], "protein_name": "Ubiquitin carboxyl-terminal hydrolase 48", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPRLQLEKAAWRWAETVRPEEVSQEHIETAYRIWLEPCIRGVCRRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQYLFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNIVQQQFCGEYAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFCENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGFSEILDMEPYVEHKGGSYVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDLAEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVDRDNSKFEEWCIEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAEPYEFVSLEWLQKWLDESTPTKPIDNHACLCSHDKLHPDKISIMKRISEYAADIFYSRYGGGPRLTVKALCKECVVERCRILRLKNQLNEDYKTVNNLLKAAVKGSDGFWVGKSSLRSWRQLALEQLDEQDGDAEQSNGKMNGSTLNKDESKEERKEEEELNFNEDILCPHGELCISENERRLVSKEAWSKLQQYFPKAPEFPSYKECCSQCKILEREGEENEALHKMIANEQKTSLPNLFQDKNRPCLSNWPEDTDVLYIVSQFFVEEWRKFVRKPTRCSPVSSVGNSALLCPHGGLMFTFASMTKEDSKLIALIWPSEWQMIQKLFVVDHVIKITRIEVGDVNPSETQYISEPKLCPECREGLLCQQQRDLREYTQATIYVHKVVDNKKVMKDSAPELNVSSSETEEDKEEAKPDGEKDPDFNQSNGGTKRQKISHQNYIAYQKQVIRRSMRHRKVRGEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEPIADYAAMDDVMQVCMPEEGFKGTGLLGH", "sequence_length": 1035, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5d9d1b449992db44f24f76a2c456eb866bb5401965a25938fb02e998b0f6d090", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q86UV5.json", "taxon_id": "9606", "uniprot_accession": "Q86UV5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dusp-pf06337.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06337", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dusp-pf06337.yaml" } ], "pfam_ids": [ "PF00443", "PF02148", "PF06337" ], "protein_name": "Ubiquitin carboxyl-terminal hydrolase 20", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDSRDLCPHLDSIGEVTKEDLLLKSKGTCQSCGVTGPNLWACLQVACPYVGCGESFADHSTIHAQAKKHNLTVNLTTFRLWCYACEKEVFLEQRLAAPLLGSSSKFSEQDSPPPSHPLKAVPIAVADEGESESEDDDLKPRGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPALCKSYQKLVSEVWHKKRPSYVVPTSLSHGIKLVNPMFRGYAQQDTQEFLRCLMDQLHEELKEPVVATVALTEARDSDSSDTDEKREGDRSPSEDEFLSCDSSSDRGEGDGQGRGGGSSQAETELLIPDEAGRAISEKERMKDRKFSWGQQRTNSEQVDEDADVDTAMAALDDQPAEAQPPSPRSSSPCRTPEPDNDAHLRSSSRPCSPVHHHEGHAKLSSSPPRASPVRMAPSYVLKKAQVLSAGSRRRKEQRYRSVISDIFDGSILSLVQCLTCDRVSTTVETFQDLSLPIPGKEDLAKLHSAIYQNVPAKPGACGDSYAAQGWLAFIVEYIRRFVVSCTPSWFWGPVVTLEDCLAAFFAADELKGDNMYSCERCKKLRNGVKYCKVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLDLRPFLAKECTSQITTYDLLSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEGYVLFYRKSSEEAMRERQQVVSLAAMREPSLLRFYVSREWLNKFNTFAEPGPITNQTFLCSHGGIPPHKYHYIDDLVVILPQNVWEHLYNRFGGGPAVNHLYVCSICQVEIEALAKRRRIEIDTFIKLNKAFQAEESPGVIYCISMQWFREWEAFVKGKDNEPPGPIDNSRIAQVKGSGHVQLKQGADYGQISEETWTYLNSLYGGGPEIAIRQSVAQPLGPENLHGEQKIEAETRAV", "sequence_length": 914, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3e70b0b7ca5f603073f0787ebf6196ed2ed3f9fd0a1e9f8d92c3f1367cb094eb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y2K6.json", "taxon_id": "9606", "uniprot_accession": "Q9Y2K6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dusp-pf06337.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06337", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dusp-pf06337.yaml" } ], "pfam_ids": [ "PF00443", "PF06337", "PF14533", "PF14836" ], "protein_name": "Ubiquitin carboxyl-terminal hydrolase 15", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPKSPGASNFSTLPKISPSSLSNNYNNMNNRNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQRQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDIENENCMHTN", "sequence_length": 981, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "718abd4aac55fd93d7eecd8806678b530b64ba9b3670cf2a21af640e17351307", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y4E8.json", "taxon_id": "9606", "uniprot_accession": "Q9Y4E8", "uniprot_release": "2026_03" } ], "pfam_id": "PF06337", "short_name": "DUSP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06341", "short_name": "DUF1056", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1057-pf06342.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06342", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1057-pf06342.yaml" } ], "pfam_ids": [ "PF06342" ], "protein_name": "Uncharacterized protein F35H12.5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFSSRHILSNVRPIIKNLDLTRGFSDRKTKYFDLNDLIKTVNVTYKTGVNLEETTTVESKYVDVTPSSNTKGTVVTLSGSPGTHNDFKYMKSFFEQKKIRLICTNYPGSEFVTGGLHNSYTNQDRNSYMKSLMETLELKNVNRLIIMGHSRGGENALQLTSMLSNDENWPLVGAVMINSPGFAPHKGISKRMGTINFIISLIKRHNKTINSILHPILHYFYNNLIGLRVSHGKVAAAAILPMQTFAFDEQKLSIDDLRAKPGIRAFYGYGSKDFLIDEHQSEEVAMYFSEEDHYVISNKQDAEKAIKEARKSFTTGKQFVTANFKEEGHFLQKTYPEFIVEVVDSIFDADKEVDTKI", "sequence_length": 357, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8acacc87102428b0d9dc0eb26a6b69af24f12ef47b465b3f8c579461b9de1736", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WT51.json", "taxon_id": "6239", "uniprot_accession": "Q8WT51", "uniprot_release": "2026_03" } ], "pfam_id": "PF06342", "short_name": "DUF1057", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06348", "short_name": "DUF1059", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06353", "short_name": "DUF1062", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06356", "short_name": "DUF1064", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Beet necrotic yellow vein virus (isolate Japan/S)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bnyvv-tgb3-pf06358.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06358", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bnyvv-tgb3-pf06358.yaml" } ], "pfam_ids": [ "PF06358" ], "protein_name": "Movement protein TGB3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLVVKVDLSNIVLYIVAGCVVVSMLYSPFFSNDVKASSYAGAVFKGSGCIMDRNSFAQFGSCDIPKHVAESITKVATKEHDADIMVKRGEVTVRVVTLTETLFIILSRLFGLAVFLFMICLMSIVWFWCHR", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "809104d1d794d658138e83ec1c095df36b3346c89c1951a7ff0c24b4d35d1c50", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q65676.json", "taxon_id": "652670", "uniprot_accession": "Q65676", "uniprot_release": "2026_03" } ], "pfam_id": "PF06358", "short_name": "BNYVV_TGB3", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06364", "short_name": "DUF1068", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/agp-pf06376.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/agp-pf06376.yaml" } ], "pfam_ids": [ "PF06376" ], "protein_name": "Arabinogalactan protein 16", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASRNSVTGFALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSYSFF", "sequence_length": 73, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d11f63274449ad908297d25c31dec021f363c1ee6d8d304a0ca697a34d57bc52", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O82337.json", "taxon_id": "3702", "uniprot_accession": "O82337", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/agp-pf06376.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/agp-pf06376.yaml" } ], "pfam_ids": [ "PF06376" ], "protein_name": "Arabinogalactan protein 22", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH", "sequence_length": 63, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9e0b6e28049dde95ab9bba4e4c75a3611dd87b43aeeae771280415c33e96fc42", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FK16.json", "taxon_id": "3702", "uniprot_accession": "Q9FK16", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/agp-pf06376.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/agp-pf06376.yaml" } ], "pfam_ids": [ "PF06376" ], "protein_name": "Arabinogalactan protein 20", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSSYTFF", "sequence_length": 74, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b8de5df24b923933364b05e0462030a6468865f7bf07361f7c6c9c39d91373ac", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M373.json", "taxon_id": "3702", "uniprot_accession": "Q9M373", "uniprot_release": "2026_03" } ], "pfam_id": "PF06376", "short_name": "AGP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06378", "short_name": "SSAP_Sak", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Barley yellow dwarf virus (isolate PAV)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1072-pf06380.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06380", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1072-pf06380.yaml" } ], "pfam_ids": [ "PF06380" ], "protein_name": "Uncharacterized protein ORF6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDLHVIAVCILALTVLSGVGAVLSCCRWCCSNPFPPSLSSVQAKDSRSVRETIKNIEGASAQ", "sequence_length": 63, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cddf7c6f50cf37b46d39c1da467e0e5fcf92c3418ebc854d34668ab808dd3df9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P09517.json", "taxon_id": "2169986", "uniprot_accession": "P09517", "uniprot_release": "2026_03" } ], "pfam_id": "PF06380", "short_name": "DUF1072", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06381", "short_name": "Phage_portal_3", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/protamine-like-pf06382.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06382", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/protamine-like-pf06382.yaml" } ], "pfam_ids": [ "PF06382" ], "protein_name": "Protamine-like protein 99C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGRKRGRKEYCPPIYKRQKVARVTNNGYLNFMTEYKKRFYGLSPQDMVHYAAKQWTQLSMAEKEAFKSKKPSTITLKSPAQYVACEMKSDVAGGQQSSCQRQSPSARLRESERRSSRSKTLCRSAKNRQRGKPKPQQSKRRLSHMGSAVAYIHFLRKFQRKNTELRTIDLLKTATRLWCRLPERHRHAFERPLWIVTIGKS", "sequence_length": 201, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "09f9c34f99c85b03c5b5b175818e53b1e48ece5c851870db7aee433a8f012134", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VAF7.json", "taxon_id": "7227", "uniprot_accession": "Q9VAF7", "uniprot_release": "2026_03" } ], "pfam_id": "PF06382", "short_name": "Protamine_like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1075-pf06388.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06388", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1075-pf06388.yaml" } ], "pfam_ids": [ "PF06388" ], "protein_name": "Protein FAM162A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSLRGLRLVAGSCFRSCERDAFSSLRLTRNSDLKRTNGFCSKPQESPKPPDQHTYSHRVPLHKPTDWEKKILIWSGRFKKEDEIPETVSFEMLDAAKNKVRVKISYVMIALTVAGCVLMVIEGKKAARRNETLTSLNLEKKARLREEAAMKAKTE", "sequence_length": 156, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1116608677ebb87e9352c9b639382b25c89f96f64e2f1486bbbdaee99951e7c9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2NKR7.json", "taxon_id": "9913", "uniprot_accession": "Q2NKR7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1075-pf06388.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06388", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1075-pf06388.yaml" } ], "pfam_ids": [ "PF06388" ], "protein_name": "Protein FAM162A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSLSGLRLAAGSCFRLCERDVSSSLRLTRSSDLKRINGFCTKPQESPGAPSRTYNRVPLHKPTDWQKKILIWSGRFKKEDEIPETVSLEMLDAAKNKMRVKISYLMIALTVVGCIFMVIEGKKAAQRHETLTSLNLEKKARLKEEAAMKAKTE", "sequence_length": 154, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "31c094b9947c733bcdecfdb3352964cd1d6a61d5461df6cce1c13e4fb54768c1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96A26.json", "taxon_id": "9606", "uniprot_accession": "Q96A26", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1075-pf06388.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06388", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1075-pf06388.yaml" } ], "pfam_ids": [ "PF06388" ], "protein_name": "Protein FAM162A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWSLGGLRLAAGHCLRLYERNASSSLRFTRNTDLKRINGFCTKPQESPKTPTQSYRHGVPLHKPTDFEKKILLWSGRFKKEEEIPETISFEMLDAAKNKLRVKVSYLMIALTVAGCIYMVIEGKKAAKRHESLTSLNLERKARLREEAAMKAKTD", "sequence_length": 155, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "73ae307ac8027f0b84f0a8c27f92bb803b6cd83953ec33fa121c431742ce5877", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D6U8.json", "taxon_id": "10090", "uniprot_accession": "Q9D6U8", "uniprot_release": "2026_03" } ], "pfam_id": "PF06388", "short_name": "DUF1075", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06416", "short_name": "T3SS_NleG", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/emc4-pf06417.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06417", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/emc4-pf06417.yaml" } ], "pfam_ids": [ "PF06417" ], "protein_name": "ER membrane protein complex subunit 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEQEPYEWAKHLLDTKYIEKYNIQNSNTLPSPPGFEGNSSKGNVTRKQQDATSQTTSLAQKNQITVLQVQKAWQIALQPAKSIPMNIFMSYMSGTSLQIIPIMTALMLLSGPIKAIFSTRSAFKPVLGNKATQSQVQTAMFMYIVFQGVLMYIGYRKLNSMGLIPNAKGDWLPWERIAHYNNGLQWFSD", "sequence_length": 190, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "375732f0efc5511ae453bc36ea3a13e94f17e1a071c8633aa565b1498daca8d2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53073.json", "taxon_id": "559292", "uniprot_accession": "P53073", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/emc4-pf06417.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06417", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/emc4-pf06417.yaml" } ], "pfam_ids": [ "PF06417" ], "protein_name": "ER membrane protein complex subunit 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAQGGLVANRGRRFKWAIELSGPGGGSRGRSDRGSGQGDSLYPVGYLDKQVPDTSVQETDRILVEKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLESSSQKFLQGLVYLIGNLMGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEFSGGGLLL", "sequence_length": 183, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "04a80e743a8bdc25fb2ade4630c4145a3a2a11542c58da2f31ab17655c9b57cb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5J8M3.json", "taxon_id": "9606", "uniprot_accession": "Q5J8M3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/emc4-pf06417.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06417", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/emc4-pf06417.yaml" } ], "pfam_ids": [ "PF06417" ], "protein_name": "ER membrane protein complex subunit 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSSAGQGGGALSTRGGAATKRMKWAVELSLGNSRSRSDRQGKDGDVMYPVGYSDKPVPDTSVQEADRNLVEKRCWDVALGPLKQIPMNLFIMYMSGNTISIFPIMMVCMMAWRPIQALMSMSATFKLLESSSQQWLQGLVYLIGNLLGSALAIYKCQSMGLLPTHSSDWLAFIEPPQRLEIMGGGMVM", "sequence_length": 189, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6f3c47b28c4efd526fe49c2471926ef2e1d2ab079303dd8f8ca150fbaf451959", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P011.json", "taxon_id": "7955", "uniprot_accession": "Q6P011", "uniprot_release": "2026_03" } ], "pfam_id": "PF06417", "short_name": "EMC4", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 18, "discovery_scanned": true, "example_count": 18, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Treponema pallidum (strain DSM 117211 / Nichols)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/flge-d2-pf07559.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07559", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/flge-d2-pf07559.yaml" } ], "pfam_ids": [ "PF00460", "PF06429", "PF07559", "PF22692" ], "protein_name": "Flagellar hook protein FlgE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMRSLFSGVSGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSAAARPNEEVGGVNPKEVGLGVLIASIDTVHTQGALQTTGINTDVSIQGSGFFVLKSGEKTFFTRAGAFGVDNAGTLVNPANGMRVQGWMAQDVAGERLINSSAQTQDLVIPIGQKIDAQQTSTVHYACNLDKRLPELAADANEADVRKSTWTTDFQVYDSFGQQHTLQINFSRVPGTNNQWQATVAVDPGTEVDTQTRVGVGTSDGAANTFIVNFDNFGHLASVTDTAGNVTGPTGQVLLEASYDVVGANPDDAGQVTRHAFTLNLGEIGTARNTITQFAERSTTKAYRQDGYAMGYLENFKIDQSGVITGVYSNGVSQDIGQLALAGFANQGGLEKAGENTYVQSNNSGIANISTSGVMGKGKLIAGTLEMSNVDLTDQFTDMIITQKGFQAGAKTIQTSDTMLDTVLSLKR", "sequence_length": 463, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "85d48aafdcc72475f9bf591df4c0e3a79fba3334d268495d0ffad001f2e4f290", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O07884.json", "taxon_id": "243276", "uniprot_accession": "O07884", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "P0A1I7", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/appendage/bacterial_type_flagellum_basal_body_proximal_rod.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009429", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/appendage/bacterial_type_flagellum_basal_body_proximal_rod.yaml" }, { "cited_uniprot_accession": "P0A1I7", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/appendage/bacterial_type_flagellum_basal_body_rod.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030694", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/appendage/bacterial_type_flagellum_basal_body_rod.yaml" } ], "pfam_ids": [ "PF00460", "PF06429" ], "protein_name": "Flagellar basal-body rod protein FlgC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALLNIFDIAGSALAAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQVDAAPGQATGGVKVASVIESQAPEKLVYEPGNPLADANGYVKMPNVDVVGEMVNTMSASRSYQANIEVLNTVKSMMLKTLTLGQ", "sequence_length": 134, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "739327e7b97fa0807979a22ca0445a143fa8feec0accbc39759c476ad14b966a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A1I7.json", "taxon_id": "99287", "uniprot_accession": "P0A1I7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "P0A1J1", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/appendage/bacterial_type_flagellum.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009288", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/appendage/bacterial_type_flagellum.yaml" }, { "cited_uniprot_accession": "P0A1J1", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/appendage/bacterial_type_flagellum_hook.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009424", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/appendage/bacterial_type_flagellum_hook.yaml" } ], "pfam_ids": [ "PF00460", "PF06429", "PF07559", "PF22692" ], "protein_name": "Flagellar hook protein FlgE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATAPTTASTTLKFNENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR", "sequence_length": 403, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7c0f2a912fac46f10adcb15f4cc5e5839909e0fe4d7562a646f06419c0ab7e2f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P0A1J1.json", "taxon_id": "99287", "uniprot_accession": "P0A1J1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "P0A1J3", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/appendage/bacterial_type_flagellum_basal_body_distal_rod.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009426", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/appendage/bacterial_type_flagellum_basal_body_distal_rod.yaml" }, { "cited_uniprot_accession": "P0A1J3", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/appendage/bacterial_type_flagellum_basal_body_rod.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030694", "section": "uniprot_accession", "url": 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"PF06429", "PF22692" ], "protein_name": "Flagellar hook-basal body complex protein FlhP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRSMLTASTTLNQLQQQIDTISSNLSNSNTTGYKAKDTNFSELVRQQFDQVDEKNEEVAKARKTPPGLRLGVGAMMSSRLVSDQGSIQKTDRDLDIAFTSPYQYLQVNVNGNRQYTRDGALYVTPSAANANQLQLVTGNGYPVLDENGNTVNIDSSMKNITINKNGTLTASDGNAVQRFNLGVVQVNNPQELKSEGNNLFSIDNAAAFEELNGANRQNIGMQQGSLEMSNVDISEQMTDLITSQRSYQLNSRTITMGDQMLGLINSVR", "sequence_length": 269, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cf64d357362ae5b905223b05f07e19f4aeacccdccc8552e9b3a95b2d4b884b74", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P39753.json", "taxon_id": "224308", "uniprot_accession": "P39753", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/glycosyl-hydrol-f32.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00609", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/glycosyl-hydrol-f32.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/exo-inulinase-domain-1-2-60-120-560.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.60.120.560", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/exo-inulinase-domain-1-2-60-120-560.yaml" } ], "pfam_ids": [ "PF00251", "PF06439", "PF08244" ], "protein_name": "Levanase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKRLIQVMIMFTLLLTMAFSADAADSSYYDEDYRPQYHFTPEANWMNDPNGMVYYAGEYHLFYQYHPYGLQWGPMHWGHAVSKDLVTWEHLPVALYPDEKGTIFSGSAVVDKNNTSGFQTGKEKPLVAIYTQDREGHQVQSIAYSNDKGRTWTKYAGNPVIPNPGKKDFRDPKVFWYEKEKKWVMVLAAGDRILIYTSKNLKQWTYASEFGQDQGSHGGVWECPDLFELPVDGNPNQKKWVMQVSVGNGAVSGGSGMQYFVGDFDGTHFKNENPPNKVLWTDYGRDFYAAVSWSDIPSTDSRRLWLGWMSNWQYANDVPTSPWRSATSIPRELKLKAFTEGVRVVQTPVKELETIRGTSKKWKNLTISPASHNVLAGQSGDAYEINAEFKVSPGSAAEFGFKVRTGENQFTKVGYDRRNAKLFVDRSESGNDTFNPAFNTGKETAPLKPVNGKVKLRIFVDRSSVEVFGNDGKQVITDIILPDRSSKGLELYAANGGVKVKSLTIHPLKKVWGTTPFMSNMTGWTTVNGTWADTIEGKQGRSDGDSFILSSASGSDFTYESDITIKDGNGRGAGALMFRSDKDAKNGYLANVDAKHDLVKFFKFENGAASVIAEYKTPIDVNKKYHLKTEAEGDRFKIYLDDRLVIDAHDSVFSEGQFGLNVWDATAVFQNVTKES", "sequence_length": 677, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "97022af0128ba1fd85ec5ab79a2117ae0493fad4d030870fe509835bec153b82", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P05656.json", "taxon_id": "224308", "uniprot_accession": "P05656", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/3-keto-alpha-glucoside-1-2-lyase-3-keto-2-hydroxy-glucal-hydratase-dom-ipr010496.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010496", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/3-keto-alpha-glucoside-1-2-lyase-3-keto-2-hydroxy-glucal-hydratase-dom-ipr010496.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/exo-inulinase-domain-1-2-60-120-560.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.60.120.560", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/exo-inulinase-domain-1-2-60-120-560.yaml" } ], "pfam_ids": [ "PF06439" ], "protein_name": "Uncharacterized protein MJ0945", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLRQYINVPRLGEIMNLKELTVILIIPIVYLGVCGCFEIVPKSFYDNFSSYNVGDKAPFGEWKVKEGGFKIEAILSEDKKTLNKVAVPINNGIIYIDKNYTDFKFIVDIKRLEESDSPKIYFRLINNANAGYYIDIEGFDRGYVLYKFNGTKVEKLAESYDAAPAGTDFYRYEVVAKDNKIIFLAGGQKYIEYTDNNTPILKGGIGIGGGRAYYDNVRVEPIE", "sequence_length": 224, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c2f98271a15857f98e79780728fb84db2d550dbd3c45a98a5049fae9b4ed7712", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58355.json", "taxon_id": "243232", "uniprot_accession": "Q58355", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/3keto-disac-hyd-pf06439.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06439", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/3keto-disac-hyd-pf06439.yaml" } ], "pfam_ids": [ "PF06439" ], "protein_name": "3-keto-disaccharide hydrolase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKVFYPLACCLAAGVLVSCSGQKKAGSAQEEQSANEVAVSYSKSLKAAEMDSLQLPVDADGYITIFDGKTFNGWRGYGKDRVPSKWTIEDGCIKFNGSGGGEAQDGDGGDLIFAHKFKNFELEMEWKVSKGGNSGIFYLAQEVTSKDKDGNDVLEPIYISAPEYQVLDNDNHPDAKLGKDNNRQSASLYDMIPAVPQNAKPFGEWNKAKIMVYKGTVVHGQNDENVLEYHLWTKQWTDLLQASKFSQDKWPLAFELLNNCGGENHEGFIGMQDHGDDVWFRNIRVKVLD", "sequence_length": 290, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9fb07b1791e78a16f3c9680c7cb7be7022ccb7c3c61d8403ab2fd5e1b358c83b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8A5T1.json", "taxon_id": "226186", "uniprot_accession": "Q8A5T1", "uniprot_release": "2026_03" } ], "pfam_id": "PF06439", "short_name": "3keto-disac_hyd", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/apob100-c-pf12491.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12491", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/apob100-c-pf12491.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-vitellogenin-pf01347.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01347", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-vitellogenin-pf01347.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:E9Q414", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01347", "PF06448", "PF09172", "PF12491", "PF29934", "PF30406", "PF30433", "PF30435", "PF30436", "PF30444", "PF30454", "PF30460" ], "protein_name": "Apolipoprotein B-100", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a0d76291bcc3fd2eacda4e6cfdb56aa90c5de34e8aea539cb824d38d5844594c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGPRKPALRTPLLLLFLLLFLDTSVWAQDEVLENLSFSCPKDATRFKHLRKYVYNYEAESSSGVQGTADSRSATKINCKVELEVPQICGFIMRTNQCTLKEVYGFNPEGKALMKKTKNSEEFAAAMSRYELKLAIPEGKQIVLYPDKDEPKYILNIKRGIISALLVPPETEEDQQELFLDTVYGNCSTQVTVNSRKGTVPTEMSTERNLQQCDGFQPISTSVSPLALIKGLVHPLSTLISSSQTCQYTLDPKRKHVSEAVCDEQHLFLPFSYKNKYGIMTRVTQKLSLEDTPKINSRFFSEGTNRMGLAFESTKSTSSPKQADAVLKTLQELKKLSISEQNAQRANLFNKLVTELRGLTGEAITSLLPQLIEVSSPITLQALVQCGQPQCYTHILQWLKTEKAHPLLVDIVTYLMALIPNPSTQRLQEIFNTAKEQQSRATLYALSHAVNSYFDVDHSRSPVLQDIAGYLLKQIDNECTGNEDHTFLILRVIGNMGRTMEQVMPALKSSVLSCVRSTKPSLLIQKAALQALRKMELEDEVRTILFDTFVNGVAPVEKRLAAYLLLMKNPSSSDINKIAQLLQWEQSEQVKNFVASHIANILNSEELYVQDLKVLIKNALENSQFPTIMDFRKFSRNYQISKSASLPMFDPVSVKIEGNLIFDPSSYLPRESLLKTTLTVFGLASLDLFEIGLEGKGFEPTLEALFGKQGFFPDSVNKALYWVNGRVPDGVSKVLVDHFGYTTDGKHEQDMVNGIMPIVDKLIKDLKSKEIPEARAYLRILGKELSFVRLQDLQVLGKLLLSGAQTLQGIPQMVVQAIREGSKNDLFLHYIFMDNAFELPTGAGLQLQVSSSGVFTPGIKAGVRLELANIQAELVAKPSVSLEFVTNMGIIIPDFAKSSVQMNTNFFHESGLEARVALKAGQLKVIIPSPKRPVKLFSGSNTLHLVSTTKTEVIPPLVENRQSWSTCKPLFTGMNYCTTGAYSNASSTESASYYPLTGDTRYELELRPTGEVEQYSATATYELLKEDKSLVDTLKFLVQAEGVQQSEATVLFKYNRRSRTLSSEVLIPGFDVNFGTILRVNDESAKDKNTYKLILDIQNKKITEVSLVGHLSYDKKGDGKIKGVVSIPRLQAEARSEVHTHWSSTKLLFQMDSSATAYGSTISKRVTWRYDNEIIEFDWNTGTNVDTKKVASNFPVDLSHYPRMLHEYANGLLDHRVPQTDVTFRDMGSKLIVATNTWLQMATRGLPYPQTLQDHLNSLSELNLLKMGLSDFHIPDNLFLKTDGRVKYTMNRNKINIDIPLPLGGKSSKDLKMPESVRTPALNFKSVGFHLPSREVQVPTFTIPKTHQLQVPLLGVLDLSTNVYSNLYNWSASYTGGNTSRDHFSLQAQYRMKTDSVVDLFSYSVQGSGETTYDSKNTFTLSCDGSLHHKFLDSKFKVSHVEKFGNSPVSKGLLTFETSSALGPQMSATVHLDSKKKQHLYVKDIKVDGQFRASSFYAQGKYGLSCERDVTTGQLSGESNMRFNSTYFQGTNQIVGMYQDGALSITSTSDLQDGIFKNTASLKYENYELTLKSDSSGQYENFAASNKLDVTFSTQSALLRSEHQANYKSLRLVTLLSGSLTSQGVELNADILGTDKINTGAHKATLKIARDGLSTSATTNLKYSPLLLENELNAELGLSGASMKLSTNGRFKEHHAKFSLDGRAALTEVSLGSIYQAMILGADSKNIFNFKLSREGLRLSNDLMGSYAEMKLDHTHSLNIAGLSLDFFSKMDNIYSGDKFYKQNFNLQLQPYSFITTLSNDLRYGALDLTNNGRFRLEPLKLNVGGNFKGTYQNNELKHIYTISYTDLVVASYRADTVAKVQGVEFSHRLNADIEGLTSSVDVTTSYNSDPLHFNNVFHFSLAPFTLGIDTHTSGDGKLSFWGEHTGQLYSKFLLKAEPLALIVSHDYKGSTSHSLPYESSISTALEHTVSALLTPAEQTSTWKFKTKLNDKVYSQDFEAYNTKDKIGVELSGRADLSGLYSPIKLPFFYSEPVNVLNGLEVNDAVDKPQEFTIIAVVKYDKNQDVHTINLPFFKSLPDYLERNRRGMISLLEAMRGELQRLSVDQFVRKYRAALSRLPQQIHHYLNASDWERQVAGAKEKITSFMENYRITDNDVLIAIDSAKINFNEKLSQLETYAIQFDQYIKDNYDPHDLKRTIAEIIDRIIEKLKILDEQYHIRVNLAKSIHNLYLFVENVDLNQVSSSNTSWIQNVDSNYQVRIQIQEKLQQLRTQIQNIDIQQLAAEVKRQMDAIDVTMHLDQLRTAILFQRISDIIDRVKYFVMNLIEDFKVTEKINTFRVIVRELIEKYEVDQHIQVLMDKSVELAHRYSLSEPLQKLSNVLQRIEIKDYYEKLVGFIDDTVEWLKALSFKNTIEELNRLTDMLVKKLKAFDYHQFVDKTNSKIREMTQRINAEIQALKLPQKMEALKLLVEDFKTTVSNSLERLKDTKVTVVIDWLQDILTQMKDHFQDTLEDVRDRIYQMDIQRELEHFLSLVNQVYSTLVTYMSDWWTLTAKNITDFAEQYSIQNWAESIKVLVEQGFIVPEMQTFLWTMPAFEVSLRALQEGNFQTPVFIVPLTDLRIPSIRINFKMLKNIKIPLRFSTPEFTLLNTFHVHSFTIDLLEIKAKIIRTIDQILSSELQWPLPEMYLRDLDVVNIPLARLTLPDFHVPEITIPEFTIPNVNLKDLHVPDLHIPEFQLPHLSHTIEIPAFGKLHSILKIQSPLFILDANANIQNVTTSGNKAEIVASVTAKGESQFEALNFDFQAQAQFLELNPHPPVLKESMNFSSKHVRMEHEGEIVFDGKAIEGKSDTVASLHTEKNEVEFNNGMTVKVNNQLTLDSHTKYFHKLSVPRLDFSSKASLNNEIKTLLEAGHVALTSSGTGSWNWACPNFSDEGIHSSQISFTVDGPIAFVGLSNNINGKHLRVIQKLTYESGFLNYSKFEVESKVESQHVGSSILTANGRALLKDAKAEMTGEHNANLNGKVIGTLKNSLFFSAQPFEITASTNNEGNLKVGFPLKLTGKIDFLNNYALFLSPRAQQASWQASTRFNQYKYNQNFSAINNEHNIEASIGMNGDANLDFLNIPLTIPEINLPYTEFKTPLLKDFSIWEETGLKEFLKTTKQSFDLSVKAQYKKNSDKHSIVVPLGMFYEFILNNVNSWDRKFEKVRNNALHFLTTSYNEAKIKVDKYKTENSLNQPSGTFQNHGYTIPVVNIEVSPFAVETLASSHVIPTAISTPSVTIPGPNIMVPSYKLVLPPLELPVFHGPGNLFKFFLPDFKGFNTIDNIYIPAMGNFTYDFSFKSSVITLNTNAGLYNQSDIVAHFLSSSSFVTDALQYKLEGTSRLMRKRGLKLATAVSLTNKFVKGSHDSTISLTKKNMEASVRTTANLHAPIFSMNFKQELNGNTKSKPTVSSSIELNYDFNSSKLHSTATGGIDHKFSLESLTSYFSIESFTKGNIKSSFLSQEYSGSVANEANVYLNSKGTRSSVRLQGASKVDGIWNVEVGENFAGEATLQRIYTTWEHNMKNHLQVYSYFFTKGKQTCRATLELSPWTMSTLLQVHVSQLSSLLDLHHFDQEVILKANTKNQKISWKGGVQVESRVLQHNAQFSNDQEEIRLDLAGSLDGQLWDLEAIFLPVYGKSLQELLQMDGKRQYLQASTSLLYTKNPNGYLLSLPVQELADRFIIPGIKLNDFSGVKIYKKLSTSPFALNLTMLPKVKFPGIDLLTQYSTPEGSSVPIFEATIPEIHLTVSQFTLPKSLPVGNTVFDLNKLANMIADVDLPSVTLPEQTIVIPPLEFSVPAGIFIPFFGELTARAGMASPLYNVTWSAGWKTKADHVETFLDSMCTSTLQFLEYALKVVETHKIEEDLLTYNIKGTLQHCDFNVEYNEDGLFKGLWDWQGEAHLDITSPALTDFHLYYKEDKTSLSASAASSTIGTVGLDSSTDDQSVELNVYFHPQSPPEKKLSIFKTEWRYKESDGERYIKINWEEEAASRLLGSLKSNVPKASKAIYDYANKYHLEYVSSELRKSLQVNAEHARRMVDEMNMSFQRVARDTYQNLYEEMLAQKSLSIPENLKKRVLDSIVHVTQKYHMAVMWLMDSFIHFLKFNRVQFPGYAGTYTVDELYTIVMKETKKSLSQLFNGLGNLLSYVQNQVEKSRLINDITFKCPFFSKPCKLKDLILIFREELNILSNIGQQDIKFTTILSSLQGFLERVLDIIEEQIKCLKDNESTCVADHINMVFKIQVPYAFKSLREDIYFVLGEFNDFLQSILQEGSYKLQQVHQYMKALREEYFDPSMVGWTVKYYEIEENMVELIKTLLVSFRDVYSEYSVTAADFASKMSTQVEQFVSRDIREYLSMLTDINGKWMEKIAELSIVAKETMKSWVTAVAKIMSDYPQQFHSNLQDFSDQLSSYYEKFVGESTRLIDLSIQNYHVFLRYITELLRKLQVATANNVSPYIKLAQGELMITF", "sequence_length": 4505, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a0d76291bcc3fd2eacda4e6cfdb56aa90c5de34e8aea539cb824d38d5844594c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E9Q414.json", "taxon_id": "10090", "uniprot_accession": "E9Q414", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/apob100-c-pf12491.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12491", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/apob100-c-pf12491.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1081-pf06448.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06448", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1081-pf06448.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-vitellogenin-pf01347.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01347", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-vitellogenin-pf01347.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P04114", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01347", "PF06448", "PF09172", "PF12491", "PF29934", "PF30406", "PF30433", "PF30435", "PF30436", "PF30444", "PF30454", "PF30460" ], "protein_name": "Apolipoprotein B-100", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "42c5671fe8a847d69d0364a6f98bcfb87eda71d009976fc6470f9dcd0fc489d3", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDPPRPALLALLALPALLLLLLAGARAEEEMLENVSLVCPKDATRFKHLRKYTYNYEAESSSGVPGTADSRSATRINCKVELEVPQLCSFILKTSQCTLKEVYGFNPEGKALLKKTKNSEEFAAAMSRYELKLAIPEGKQVFLYPEKDEPTYILNIKRGIISALLVPPETEEAKQVLFLDTVYGNCSTHFTVKTRKGNVATEISTERDLGQCDRFKPIRTGISPLALIKGMTRPLSTLISSSQSCQYTLDAKRKHVAEAICKEQHLFLPFSYKNKYGMVAQVTQTLKLEDTPKINSRFFGEGTKKMGLAFESTKSTSPPKQAEAVLKTLQELKKLTISEQNIQRANLFNKLVTELRGLSDEAVTSLLPQLIEVSSPITLQALVQCGQPQCSTHILQWLKRVHANPLLIDVVTYLVALIPEPSAQQLREIFNMARDQRSRATLYALSHAVNNYHKTNPTGTQELLDIANYLMEQIQDDCTGDEDYTYLILRVIGNMGQTMEQLTPELKSSILKCVQSTKPSLMIQKAAIQALRKMEPKDKDQEVLLQTFLDDASPGDKRLAAYLMLMRSPSQADINKIVQILPWEQNEQVKNFVASHIANILNSEELDIQDLKKLVKEALKESQLPTVMDFRKFSRNYQLYKSVSLPSLDPASAKIEGNLIFDPNNYLPKESMLKTTLTAFGFASADLIEIGLEGKGFEPTLEALFGKQGFFPDSVNKALYWVNGQVPDGVSKVLVDHFGYTKDDKHEQDMVNGIMLSVEKLIKDLKSKEVPEARAYLRILGEELGFASLHDLQLLGKLLLMGARTLQGIPQMIGEVIRKGSKNDFFLHYIFMENAFELPTGAGLQLQISSSGVIAPGAKAGVKLEVANMQAELVAKPSVSVEFVTNMGIIIPDFARSGVQMNTNFFHESGLEAHVALKAGKLKFIIPSPKRPVKLLSGGNTLHLVSTTKTEVIPPLIENRQSWSVCKQVFPGLNYCTSGAYSNASSTDSASYYPLTGDTRLELELRPTGEIEQYSVSATYELQREDRALVDTLKFVTQAEGAKQTEATMTFKYNRQSMTLSSEVQIPDFDVDLGTILRVNDESTEGKTSYRLTLDIQNKKITEVALMGHLSCDTKEERKIKGVISIPRLQAEARSEILAHWSPAKLLLQMDSSATAYGSTVSKRVAWHYDEEKIEFEWNTGTNVDTKKMTSNFPVDLSDYPKSLHMYANRLLDHRVPQTDMTFRHVGSKLIVAMSSWLQKASGSLPYTQTLQDHLNSLKEFNLQNMGLPDFHIPENLFLKSDGRVKYTLNKNSLKIEIPLPFGGKSSRDLKMLETVRTPALHFKSVGFHLPSREFQVPTFTIPKLYQLQVPLLGVLDLSTNVYSNLYNWSASYSGGNTSTDHFSLRARYHMKADSVVDLLSYNVQGSGETTYDHKNTFTLSCDGSLRHKFLDSNIKFSHVEKLGNNPVSKGLLIFDASSSWGPQMSASVHLDSKKKQHLFVKEVKIDGQFRVSSFYAKGTYGLSCQRDPNTGRLNGESNLRFNSSYLQGTNQITGRYEDGTLSLTSTSDLQSGIIKNTASLKYENYELTLKSDTNGKYKNFATSNKMDMTFSKQNALLRSEYQADYESLRFFSLLSGSLNSHGLELNADILGTDKINSGAHKATLRIGQDGISTSATTNLKCSLLVLENELNAELGLSGASMKLTTNGRFREHNAKFSLDGKAALTELSLGSAYQAMILGVDSKNIFNFKVSQEGLKLSNDMMGSYAEMKFDHTNSLNIAGLSLDFSSKLDNIYSSDKFYKQTVNLQLQPYSLVTTLNSDLKYNALDLTNNGKLRLEPLKLHVAGNLKGAYQNNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNTDIAGLASAIDMSTNYNSDSLHFSNVFRSVMAPFTMTIDAHTNGNGKLALWGEHTGQLYSKFLLKAEPLAFTFSHDYKGSTSHHLVSRKSISAALEHKVSALLTPAEQTGTWKLKTQFNNNEYSQDLDAYNTKDKIGVELTGRTLADLTLLDSPIKVPLLLSEPINIIDALEMRDAVEKPQEFTIVAFVKYDKNQDVHSINLPFFETLQEYFERNRQTIIVVLENVQRNLKHINIDQFVRKYRAALGKLPQQANDYLNSFNWERQVSHAKEKLTALTKKYRITENDIQIALDDAKINFNEKLSQLQTYMIQFDQYIKDSYDLHDLKIAIANIIDEIIEKLKSLDEHYHIRVNLVKTIHDLHLFIENIDFNKSGSSTASWIQNVDTKYQIRIQIQEKLQQLKRHIQNIDIQHLAGKLKQHIEAIDVRVLLDQLGTTISFERINDILEHVKHFVINLIGDFEVAEKINAFRAKVHELIERYEVDQQIQVLMDKLVELAHQYKLKETIQKLSNVLQQVKIKDYFEKLVGFIDDAVKKLNELSFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALKLFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLEDTRDRMYQMDIQQELQRYLSLVGQVYSTLVTYISDWWTLAAKNLTDFAEQYSIQDWAKRMKALVEQGFTVPEIKTILGTMPAFEVSLQALQKATFQTPDFIVPLTDLRIPSVQINFKDLKNIKIPSRFSTPEFTILNTFHIPSFTIDFVEMKVKIIRTIDQMLNSELQWPVPDIYLRDLKVEDIPLARITLPDFRLPEIAIPEFIIPTLNLNDFQVPDLHIPEFQLPHISHTIEVPTFGKLYSILKIQSPLFTLDANADIGNGTTSANEAGIAASITAKGESKLEVLNFDFQANAQLSNPKINPLALKESVKFSSKYLRTEHGSEMLFFGNAIEGKSNTVASLHTEKNTLELSNGVIVKINNQLTLDSNTKYFHKLNIPKLDFSSQADLRNEIKTLLKAGHIAWTSSGKGSWKWACPRFSDEGTHESQISFTIEGPLTSFGLSNKINSKHLRVNQNLVYESGSLNFSKLEIQSQVDSQHVGHSVLTAKGMALFGEGKAEFTGRHDAHLNGKVIGTLKNSLFFSAQPFEITASTNNEGNLKVRFPLRLTGKIDFLNNYALFLSPSAQQASWQVSARFNQYKYNQNFSAGNNENIMEAHVGINGEANLDFLNIPLTIPEMRLPYTIITTPPLKDFSLWEKTGLKEFLKTTKQSFDLSVKAQYKKNKHRHSITNPLAVLCEFISQSIKSFDRHFEKNRNNALDFVTKSYNETKIKFDKYKAEKSHDELPRTFQIPGYTVPVVNVEVSPFTIEMSAFGYVFPKAVSMPSFSILGSDVRVPSYTLILPSLELPVLHVPRNLKLSLPDFKELCTISHIFIPAMGNITYDFSFKSSVITLNTNAELFNQSDIVAHLLSSSSSVIDALQYKLEGTTRLTRKRGLKLATALSLSNKFVEGSHNSTVSLTTKNMEVSVATTTKAQIPILRMNFKQELNGNTKSKPTVSSSMEFKYDFNSSMLYSTAKGAVDHKLSLESLTSYFSIESSTKGDVKGSVLSREYSGTIASEANTYLNSKSTRSSVKLQGTSKIDDIWNLEVKENFAGEATLQRIYSLWEHSTKNHLQLEGLFFTNGEHTSKATLELSPWQMSALVQVHASQPSSFHDFPDLGQEVALNANTKNQKIRWKNEVRIHSGSFQSQVELSNDQEKAHLDIAGSLEGHLRFLKNIILPVYDKSLWDFLKLDVTTSIGRRQHLRVSTAFVYTKNPNGYSFSIPVKVLADKFIIPGLKLNDLNSVLVMPTFHVPFTDLQVPSCKLDFREIQIYKKLRTSSFALNLPTLPEVKFPEVDVLTKYSQPEDSLIPFFEITVPESQLTVSQFTLPKSVSDGIAALDLNAVANKIADFELPTIIVPEQTIEIPSIKFSVPAGIVIPSFQALTARFEVDSPVYNATWSASLKNKADYVETVLDSTCSSTVQFLEYELNVLGTHKIEDGTLASKTKGTFAHRDFSAEYEEDGKYEGLQEWEGKAHLNIKSPAFTDLHLRYQKDKKGISTSAASPAVGTVGMDMDEDDDFSKWNFYYSPQSSPDKKLTIFKTELRVRESDEETQIKVNWEEEAASGLLTSLKDNVPKATGVLYDYVNKYHWEHTGLTLREVSSKLRRNLQNNAEWVYQGAIRQIDDIDVRFQKAASGTTGTYQEWKDKAQNLYQELLTQEGQASFQGLKDNVFDGLVRVTQEFHMKVKHLIDSLIDFLNFPRFQFPGKPGIYTREELCTMFIREVGTVLSQVYSKVHNGSEILFSYFQDLVITLPFELRKHKLIDVISMYRELLKDLSKEAQEVFKAIQSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLINYIQDEINTIFSDYIPYVFKLLKENLCLNLHKFNEFIQNELQEASQELQQIHQYIMALREEYFDPSIVGWTVKYYELEEKIVSLIKNLLVALKDFHSEYIVSASNFTSQLSSQVEQFLHRNIQEYLSILTDPDGKGKEKIAELSATAQEIIKSQAIATKKIISDYHQQFRYKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYITELLKKLQSTTVMNPYMKLAPGELTIIL", "sequence_length": 4563, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "42c5671fe8a847d69d0364a6f98bcfb87eda71d009976fc6470f9dcd0fc489d3", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P04114.json", "taxon_id": "9606", "uniprot_accession": "P04114", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/apob100-c-pf12491.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12491", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/apob100-c-pf12491.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1081-pf06448.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06448", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1081-pf06448.yaml" } ], "pfam_ids": [ "PF00134", "PF01347", "PF06448", "PF09172", "PF12491", "PF29934", "PF30406", "PF30433", "PF30435", "PF30436", "PF30444", "PF30454", "PF30460" ], "protein_name": "Apolipoprotein B-100", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGPQRPALRAPLLLLFLLLFLDTSVWAQDATRFKHLRKYVYSYEAESSSGVRGTADSRSATKINCKVELEVPQVCTLIMRTSQCTLKEVYGFNPEGKALMKKTKNSEEFASAMSRYELKLAFPEGKRVALYPDLGEPNYILNIKRGIISALLVPPETEEDKQVLFQDTVYGNCSTQVTVNSRKGTVATEMSTERNLQHCDGFQPISTSVSPLALIKGLVRPLSTLISSSQSCQYTLEPKRKHVSEAICNEQHLFLPFSYKNKYGIMTHVTQKLSLEDTPKINSRFFRGGINQVGLAFESTKSTSPPKQADAVLKTLQELKKLSISEQNAQRANLFHKLVTELRGLSGEAITSLLPQLIEVSSPITLQALIQCGQPECYTHILQWLKTEKAHPLLIDIVTYLMALIPNPSVQRLQEIFNTAKELQSRATLYALSHAVNSYYAIMDHSRSPVLEDIAGYLMKQIDNECMGDEDRTFLILRVIGNMGRTMERVMPALKSSVLNCVRSTKPSLQIQKAALQALRKMEMGDEVRTILFDTFVNDVAPVEKRLAAYLLLMRSPSSSDINKIAKLLQWEQSEQVKNFVASHIANILNSEELYVQDLKNLIKNALVNSRLPTIMDFRKFSRNYQISKSVSIPLFDPVSAKIEGNLVFDPSSYLPKESMLKTTLTVFGIASLDLFEIGLEGKGFEPTLEALFGKQGFFPDSVNKALYWVNGQVPDRVSKVLVDHFGYTKDDKHEQDMVNGIMPIVDKLIKELKSKEIPEARAYLRILGKELGFVRLQDLQVLGKLLLNGAQTFRGVPQMIVQAIREGSKDDLFLHYIFMENAFELPTGVGLQLQVSSSGVFTPGIKAGVRLELANIQAELVAKPSVSLEFVTNMGIIIPDFAKSGVQMNTNFFHESGLEARVALKAGQLKVIIPSPKRPVKLFSGSNTLHLVSTTKTEVIPPLIENRKSWSTCKPFFTGMNYCTTGAYSNASSTESASYYPLTGDTRYELELKPTGEVEQYSASATYELLKEDKSLVDTLKFLVQAEGVQQSEATAMFKYNRRSRTLSSEVLIPGFDVNFGTILRVNDESSKDKNTYKLILDIQNKKITEVSVVGHVSYDKKGDGKVKGVVSIPRLQAEARSEVHTHWSPTKLLFQMDSSATAYGSTISKRVAWRYDNEKIEFDWNTGTNVDTKKVASNFPVDLSRYPRMVHEYANGLLDHRVPQTDMTFRHMGSKLIVDHLNGLSELNLPKVGLPDFHIPDNLFLKTDGRVKYTLNKNRIEIDIPLPLGGKSSKDLKVPESVRTPALNFKSVGFHLPSQEVQIPTFTIPKTHQLQVPLLGILDLSTNVYSNLYNWSVSYTGGNTSRDHFSLQAQYRMKADSVVDLFSYSVQGSGETTYDSKSTFTLSCDGSLHHKFLDSKFKVSHVEKFGNNPVSKGLLTFETSSALGPQMSATVQLDSKKKQHLYVKDIKVDGQFRVFSLYAQGEYGLSYERDSMTGQMSGESNMKFNSTYFQGTNQIVGMYQDGMLSVTSTSDLQDGIFKNTASLKYENYELTLKSDSSGQYENFAASNKLDMTFSKQSALLRSEHQANYKSLRLVTLLSGSLTSQGVELNADILGTDKINTGAHKSTLKIAQDGVSTSATTNLKYSPLLLENELNAELGLSGASMKLSTSGRFKEHHAKFSLDGRAALTEVSLGSIYQAMILGADSKNVFNFKLSREGLKLSNDMMGSYAEMKLDHTHSLRISGLSLDFFSKMDNIYSGDKFYKQNFNLQLQPYSFGITLSNDLKYDALVLTNNGRLRLEPLKLNVGGNFKGTYQNNELKHIYTISYTDLVVASYRADTVATVQGVEFSHRLNADIEGLASSVDVTTSYSSDPLHFNNVFRFVLAPFTLGVDTHTSGDGKMSLWGEHTGQMYSKFLLKAEPLALTFSHDYKGSTSHNLLYKNSVSTALEHTLSALLTPAEQTSSWKFKTSLNDKVYSQEFEAYNTKDKIGIELSGRADLSGLYSPIKVPFFYSEPVNVLNSLEINDAFDEPREFTIDAVVKYDKNQDVHTISLPFFQSLPDYLERNRRGIISLLEAMKGELQRLSVDQFVRKYRVALSRLPQQIHDYLNASDWERQVAGAKEKLTSFMENYRITDNDVLIALDSAKINLNEKLSQLETYAIQFDQYIRDNYDAQDLKRTIAQIIDRIIEKLKMLDEQYHIRVNLAKSIHNLYLFVENVDLNQISSSGASWIQNVDTKYQIRIQIQEKLQHLRTQIHNIDIQQLAAELKQQIEALDVPMHLDQLRTAILFQRISVIIERVKYFVMNLIEDFKVTEKINTFRVIVRELIEKYEVDRQIQVLMDKSIELAHRYSLSEPLQKLSNVLQQIEIKDYYDKLVGFIDDTVEWIKAVSFKNIIEELNRLIDMSVKKLKAFDYHQFVDKTNSKIREMTQRINAEIQALELPQKTEALKLWVEDFKTTVSNSLEKLKDTKVTVVVDWLQDGLAQIKAQFQDALEDVRDRIYQMDIQGELERCLSLVSQVYSTVVTYISDWWTLTAKNITDFAEQYSTQKWAESVKALVEQGFIVPEIQTFLGTMPAFEVSLHALQEANFQTPDFIVPLTDLRIPSIWINFKMLKNVKIPLRFSTPEFTLLNTFRVRSFTIDLLEIKAKIIRTIDQMLSSELQWPLPEVYLRDLEMVNISLARLSLPDFHVPEITIPEFTIPNVNLKDLQVPDLHIPEFQLPHLSCTTEIPAFGKLHSVLKIQSPLFILDASANIQNITTSENKAEIVASVTARGESKFEALNFDFQAQAQFLELNANPLVLKESVNFSSKHVRMEHEGKILVSGKALEGKSDTVARLHTEKNTVEFNNGIVVKINNQFTLDSQTKYFHKLSVPRLDFSSKASLNNEIKTLLEAGHMAWTSSGTGSWNWACPNFSDEGIHSSKISFIVDGPIASFGLSNNINGKHLRVVQKLTSESGFLNYSRFEVESKVESQHVGSSILTAEGRALLGDAKAEMTGEHNANLNGKVIGTLKNSLFFSAQPFEITASTNNEGNLKVSFPLKLTGKIDFLNNYALFLSPHAQQASWQLSTRFNQYKYNQNFSAINNEHNMEASIVMNGDANLDFLNIPLTIPEINLPYTRFTTPLLKDFSIWEETGLKEFLKTTKQSFDLSIKAQYKKNRDKHSVVIPLKMFYEFMLNNVNSWDRKFEKVRDNALHFLTASYNETKIKFDKYKTENSLNQPSRTFQNRGHTIPVLNIEVSPFAVETLASSHVIPKAIRTPSVTIPGPNIIVPSYRLVLPSLQLPVFHIPRTLFKFSLPDFKKLSTIDNIYIPAMGNFTYDFSFKSSVITLNTNAGLYNQSDLVARFLSSSSFVTDALQYKLEGTSRLMRKKVLKLATAVSLTNKFLKGSHDSTISLTKKNMEASVKTTANLHAPIFTMNFKQELNGNTKSKPTVSSSIELNYDFNSSKLHSAAKGGVDHKFSLESLTSYLSIESFTKGNIKGSFLSQEYSGSVANEANVYLNSKGTRSSVRLQGASNFAGIWNFEVGENFAGEATLRRIYGTWEHNMINHLQVFSYFDTKGKQTCRATLELSPWTMSTLLQVHVSQPSPLFDLHHFDQEVILKASTKNQKVSWKSEVQVESQVLQHNAHFSNDQEEVRLDIAGSLEGQLWDLENFFLPAFGKSLRELLQIDGKRQYLQASTSLHYTKNPNGYLLSLPVQELTDRFIIPGLKLNDFSGIKIYKKLSTSPFALNLTMLPKVKFPGVDLLTQYSKPEGSSVPTFETTIPEIQLTVSQFTLPKSFPVGNTVFDLNKLTNLIADVDLPSITLPEQTIEIPSLEFSVPAGIFIPFFGELTAHVGMASPLYNVTWSTGWKNKADHVETFLDSTCSSTLQFLEYALKVVGTHRIENDKFIYKIKGTLQHCDFNVKYNEDGIFEGLWDLEGEAHLDITSPALTDFHLHYKEDKTSVSASAASPAIGTVSLDASTDDQSVRLNVYFRPQSPPDNKLSIFKMEWRDKESDGETYIKINWEEEAAFRLLDSLKSNVPKASEAVYDYVKKYHLGHASSELRKSLQNDAEHAIRMVDEMNVNAQRVTRDTYQSLYKKMLAQESQSIPEKLKKMVLGSLVRITQKYHMAVTWLMDSVIHFLKFNRVQFPGNAGTYTVDELYTIAMRETKKLLSQLFNGLGHLFSYVQDQVEKSRVINDITFKCPFSPTPCKLKDVLLIFREDLNILSNLGQQDINFTTILSDFQSFLERLLDIIEEKIECLKNNESTCVPDHINMFFKTHIPFAFKSLRENIYSVFSEFNDFVQSILQEGSYKLQQVHQYMKAFREEYFDPSVVGWTVKYYEIEEKMVDLIKTLLAPLRDFYSEYSVTAADFASKMSTQVEQFVSRDIREYLSMLADINGKGREKVAELSIVVKERIKSWSTAVAEITSDYLRQLHSKLQDFSDQLSGYYEKFVAESTRLIDLSIQNYHMFLRYIAELLKKLQVATANNGLLKRGDFEAAVKLGIACLYNEGLSVSDEAYAEVNGLKASRFFSMDERLNMGSDPFIWLSICPPCFRKLRDFAGKGCWEAQPALAKDCAGGSQLGLEGKAFSESVCQLFQASQAVNKQQIFSVQKGLSDTVRYILIGWLVEVAPMKDFTSLCLHLTVECVGRYLQRKLVPRYKLQLLGIACMVICTWFISKEILTIREAVRLTDNTYKYKDLVRVKREIISALEGKIRIPTVVDYKEVLLTLVPVTPRTQYLCSFLCELTLSVYTPAHLASAALLLARLMHGQTQP", "sequence_length": 4743, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f89d389c66e300038ff6be8b11fd2fe06c48d37fb5de6dd01aa5203be32f37dc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7TMA5.json", "taxon_id": "10116", "uniprot_accession": "Q7TMA5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1081-pf06448.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06448", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1081-pf06448.yaml" } ], "pfam_ids": [ "PF00094", "PF01347", "PF06448", "PF09172", "PF29934" ], "protein_name": "Apolipophorins", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARMKYNIALIGILASVLLTIAVNAENACNLGCPKSDNGLLKYIPGNYYDYSFDSILTIGASSDVPNDSDDTSLKVSGSAKIFAKGNCGYTLQLSSVKVTNTKESVEKKILNSIQKPVQFTLVSGILEPQICSDSSDLDYSLNIKRAVVSLLQSGIEAEHEVDVFGMCPTHTSTSKVGNANIITKARNLNSCSHREQINSGLVSGKVNEKAGITSSLLLQANYIKESRIVNHLIENVQLTETYKFIGNTKRNSDISAKVVTILKLKNPSGTKANSPGTGSTVRSLIFQRPETYTSKNINALKTILSDLVDSTGDYVKKETAKKFVEFIRLLRQSDSETLLELAAFPHPNKVLARKVYLDGLFRTSTAESARVILKQLSKFDEKEKLLAILSLNIVKSVDKETLNQAASQLLPNAPKELYIAVGNLVAKYCLKNYCQGPEIDAISKKFSDGLKHCKPNTKREEERIVYILKGLGNAKSLSGNTVAALSECASTGRSNRIRVAALHAFSKVKCEETLQSKSLELLKNRNEDSELRIEAYLSAISCPNAEVANQISEIVNSETVNQVGGFISSNLKAIRDSTDVSRDQQKYHLANIRVTKTFPVDYRRYSFNNEVSYKLESLGVGASTDYQIIYSQHGFLPRSSRINVTTEFFGTNYNVFEASVRQENVEDVLEYYLGPKGLVNKDFDEIVKLIEVGNNGVAAGGRARRSIVDDVSKISKKYKMYGVKNVQDLNLDVSLKLFGSELAFLSLGDNIPSSLDDIINYFSTSFEKAKQELSSFEKQFSSHHLFLDTDLAYPTSIGVPLELVAQGFAATKVDLAVSLDINAILEQNWQKAKYRLKFVPSVDINANVQIGFNAQVLSTGLRVVSSAHSATGSDITVAVISDGEGFNVDLELPREKLELINFNVDTELYVAEQDKQKAIALKGNKKNKNSQPSEICFNQLELVGLNICIKSSTSLSEVQAGNGNVAERGLSVSEKFHLSRPFNFAVYLTTERKFTFKGIHTQEAFSQKWKLDYSTPGSKVSHDTTVVYELGNKPKTFSRLSFDNSQCHFAVEGGINNDKNELVVYGQYEQDKEIKKSKIGFSKNGNEYKPLIEIQDNNGISNSINGYHADGKIVVKKNSNNIERYNFENFQVSNSNNAHVAVNGWSDVGTNSLTSELRISLDHQTFLIKENLKLENGLYEAGFFINDEHSPENIYGSSIHLTIADQSYALKTNGKAAAWSIGSDGSFNFQKLADSNSARAGSLVENVEIQYKNKQVGGIKIMSNFDVNKMDVDVEISREQKIGSIIVKYESNQRHAQDYSLEASAKINKHSIDVISKCDFNGNVYVVDNSLVTSWGTLLSAKGEIGQRYSAQDININIQGNVQISGKDKVTQWILKVIGTPDKTNSDFRISRDTSELIKLTSESQHPQDKISFAKLNLIVKNQLTAKGEFRVAKNGKGDFTASIDTLKTEPKHKLEIESKFHIQSPKYDIDASLTLDGKRKVHLKSENTIEKLKFSTKNIGEANDKIIAFEANGSLKGELRGNGEIQGTFIFNAPDGRVIDGSINRKISTNAKSGLSQGNIDAQLSDTPFGSNKKRSISLIGKLDRLNTKTKEFSANSNLVYTAFNGEKSEISYQIKQQPNGDAKNIDFSLKAYGNPLPQPFEIAFALGDYSAQHAVVSITSKYGEIFSVSANGNYNNNQALEYGLQANIEIPKSTLKSLEINSHGKVLKSLIGNENAAYNVEFFLDSKTSLGQYARVNTVWNGTANDGSYDFEAQTNNMESPLKFNGKYHRKQTGNIKDGDLTGKQTYVLNAQYGAQYVKMDASLGYGAEKVDIAYVIDSSFDSVKDIKVNIRTFKPLDDSTYVVTALFKQTDKSYGLDTTFYHSAHKKGVDIRLDLLKEKPIIISSIAELLGDRKGKVLFEILNLADLDIKINSEASYVSIDEFYIIVNWSSKKLKLDGYELEARAQSKNIKIQLKNENGIIFSGTATYALKKELNKTIIDGQGKVQYQGKALSGNFKLTRQHFDFGTDREVGFSYTFMGNLGSKNGLGTLKITNKEFNTKFSVCEEKRQCTNLIVQSIVSIDEQKLDAVEHTTLIIVDLRDFGYPYEFELKSQNTRQGLKYQYHLDSFIITGNNFKYQFTANVQPTSSTIKLALPKRQILFETTQKIPADGSLFGRYEQTASFFIDKLQKPDDVARFSAIVDVTGTERVAFNANGKLKFEHPTIRPLSISGQLNGDVNQQIASAEVIFDIFRLPEQKVVGNSELRNSRSQNGFNIAYITTVKSAGLQFQYQINSNAAVDIEAHEYNIGLELNNGEIDVKAISFLNKEKFEISLSESNKHIIYIVGDFSKQNHYAKLNTKVQILDKNPIEITSEVQPNSAKIILKRQDFIDGTAEVKLGKEFKVDVIGSGKQLFNGRVALDATNFLQTNYFINEDHLNGFWHIVESEINKDSEYISENIKERLKKSRQVTDKIVKLAKEAGPDFSKLQGKLLDYKNDIVQELEADQSIAPIIDGIRTLFKKIAGIVDDINKAISEILEKAQKSIVDIYDKLQALWKDSLLKAWEDFIITVQKLISTLKTEFIKICTQSFKDLLSALEKYGPALKNYGKAIGEIVKPINDAAQEVIKIVVNAAEGVTHEFKQYVASLPSFESIRNEFNDKVKVLKLFEKATELTNSLFDQINILPQTPETSEFLQKLHDYLIAKLKQEHIDNEKYIEELGQLLIKAVRSIWVSIRSTYPGSSDHVIDFQSWIGSLTHSFDSLAVLPSILSFRSSILNCLLNENWDVVFNKKLLYSWIFFNDFELRGHVVDGKHIFTFDGLNFAYPGNCKYILAQDSVDNNFTIIGQLTNGKLKSITLIDREGSYFEVADNLALKLNGNLVEYPQHLSGLHAWRRFYTIHLYSEYGVGIVCTSDLKVCHININGFYTSKTRGLLGNGNAEPYDDFLLIDGTLAENSAALGNDYGVGKCTAIEFDNNQFKSSKRQEMCSELFGIESTLAFNFITLDSRPYRKACDIALAKVAEKEKEATACTFALAYGSAVKQINKWVLLPPRCIKCAGPAGQHDFGDEFTVKLPNNKVDVVFVVDINVTPGVLSNLIAPAINDIRESLRSRGFSDVQVGVIVFEETKRYPALLTSDGGKINYKGNVADVKLAGIKSFCDNCVEQIITEKRILDIYNSLKEIVKGIAPQADEKAFQLALDYPFRAGAAKSIIGVRSDSLEYKNWWKFVRAQLTGSITKFDGALIHLIAPVKGLSLEGVLSEKLIGFNSRLVATVDGKDSKKRTKLQFDNDMGIDFVLNNGGWVFATQNFEKLKASDQKKMLNQITSSLADTLFKTEIVSDCRCLPIHGLHGQHKCVIKSSTFVANKKAKSA", "sequence_length": 3351, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "29e36c42fdc71326379b7dc94771a7882ac0a7efa266bf2361db75831694c834", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9V496.json", "taxon_id": "7227", "uniprot_accession": "Q9V496", "uniprot_release": "2026_03" } ], "pfam_id": "PF06448", "short_name": "DUF1081", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atp-synthase-ymf19-like-n-terminal-ipr003319.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003319", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atp-synthase-ymf19-like-n-terminal-ipr003319.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atp-synthase-ymf19-uncharacterised-c-terminal-ipr009455.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009455", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atp-synthase-ymf19-uncharacterised-c-terminal-ipr009455.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ymf19-c-pf06449.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06449", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ymf19-c-pf06449.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ymf19-pf02326.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02326", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ymf19-pf02326.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P93303", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02326", "PF06449" ], "protein_name": "ATP synthase protein YMF19", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "5ef84cf6b6b23dc4065e6651aa3a756fa131727cef3105646d77ce401ebbc3d5", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPQLDKFTYFSQFFWLCLFFFTFYIFICNDGDGVLGISRILKLRNQLLSHRGKTIRSKDPNSLEDLLRKGFSTGVSYMYASLFEVSQWCKAVDLLGKRRKITLISCFGEISGSRGMERNILYNISKSSPSNTGRWITCRNCRNDIMLIHVVHGQGSIK", "sequence_length": 158, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "5ef84cf6b6b23dc4065e6651aa3a756fa131727cef3105646d77ce401ebbc3d5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P93303.json", "taxon_id": "3702", "uniprot_accession": "P93303", "uniprot_release": "2026_03" } ], "pfam_id": "PF06449", "short_name": "YMF19_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Paenibacillus sp. (strain JDR-2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm9-1-pf06452.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06452", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm9-1-pf06452.yaml" } ], "pfam_ids": [ "PF00331", "PF00395", "PF02018", "PF06452" ], "protein_name": "Endo-1,4-beta-xylanase A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRSLKKFVSILLAAALLIPIGRLAPVAEAAENPTIVYHEDFAIDKGKAIQSGGASLTQVTGKVFDGNNDGSALYVSNRANTWDAADFKFADIGLQNGKTYTVTVKGYVDQDATVPSGAQAFLQAVDSNNYGFLASANFAAGTAFTLTKEFTVDTSVSTQLRVQSSEEGKAVPFYIGDILITANPTTTTNTVYHEDFATDKGKAVQSGGANLAQVADKVFDGNDDGKALYVSNRANTWDAADFKFADIGLQNGKTYTVTVKGYVDQDATVPSGAQAFLQAVDSNNYGFLASANFAARSAFTLTKEFTVDTSVSTQLRVQSSEEGKAVPFYIGDILITETVNSGGGQEDPPRPPALPFNTITFEDQTAGGFTGRAGTETLTVTNESNHTADGSYSLKVEGRTTSWHGPSLRVEKYVDKGYEYKVTAWVKLLSPETSTKLELASQVGDGGSANYPSLASKTITAADGWVQLQGNYRYNSVGGEYLTIYVQSSNATASYYIDDISFESTGSGPVGIQKDLAPLKDVYKNDFLIGNAISAEDLEGTRLELLKMHHDVVTAGNAMKPDALQPTKGNFTFTAADAMIDKVLAEGMKMHGHVLVWHQQSPAWLNTKKDDNNNTVPLGRDEALDNLRTHIQTVMKHFGNKVISWDVVNEAMNDNPSNPADYKASLRQTPWYQAIGSDYVEQAFLAAREVLDENPSWNIKLYYNDYNEDNQNKATAIYNMVKDINDRYAAAHNGKLLIDGVGMQGHYNINTNPDNVKLSLEKFISLGVEVSVSELDVTAGNNYTLPENLAVGQAYLYAQLFKLYKEHADHIARVTFWGMDDNTSWRAENNPLLFDKNLQAKPAYYGVIDPDKYMEEHAPESKDANQAEAQYGTPVIDGTVDSIWSNAQAMPVNRYQMAWQGATGTAKALWDDQNLYVLIQVSDSQLNKANENAWEQDSVEVFLDQNNGKTTFYQNDDGQYRVNFDNETSFSPASIAAGFESQTKKTANSYTVELKIPLTAVTPANQKKLGFDVQINDATDGARTSVAAWNDTTGNGYQDTSVYGELTLAGKGTGGTGTVGTTVPQTGNVVKNPDGSTTLKPEVKTTNGNAVGTVTGDDLKKALDQAAPAAGGKKQVIIDVPLQANAATYAVQLPTQSLKSQDGYQLTAKIANAFIQIPSNMLANTNVTTDQVSIRVAKASLDNVDAATRELIGNRPVIDLSLVAGGNVIAWNNPTAPVTVAVPYAPTAEELKHPEHILIWYIDGSGKATPVPNSRYDAALGAVVFQTTHFSTYAAVSVFTTFGDLAKVPWAKEAIDAMASRGVIKGTGENTFSPAASIKRADFIALLVRALELHGTGTTDTAMFSDVPANAYYYNELAVAKQLGIATGFEDNTFKPDSSISRQDMMVLTTRALAVLGKQLPAGGSLNAFSDAASVAGYAQDSVAALVKAGVVQGSGSKLAPNDQLTRAEAAVILYRIWKLQ", "sequence_length": 1462, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "309bfd9672baf844fd8fcf6267faa239c7c02ba32e87cf097be206fd844ffb6a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C6CRV0.json", "taxon_id": "324057", "uniprot_accession": "C6CRV0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Paenibacillus barcinonensis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm9-1-pf06452.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06452", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm9-1-pf06452.yaml" } ], "pfam_ids": [ "PF00331", "PF02018", "PF06452" ], "protein_name": "Endo-1,4-beta-xylanase C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRGKWLRLCLAAVLIVSLLPGLGAGEWKASAAKAGDILLSHSFEEGTTQGWTARGGVKVDVTAEQAYQGKQSLQTTGRTEAWNGPSLSLTDVVHKNEVVEISGYVKLVAGSAPPDLKFTVERRDRNGDTQYDQVNAAEQVTDQKWVKLQGQYSYEQGSSLLLYLESTDAKAAYLLDEFQIRLVKAAPENPGEPGEAGQALFKAYFEDGNIGNWRARGTEKLEVVSGIGHNSNRSLKTSSRSETYHGPLVEVLPYLQKGSTVHISFWAMYDEGPATQVINGSLEKEFNRDTANLEYAMFASTTLNKGQWKKIEADIIVPAESTGISGLRMYAETPWKQSSEVTETDTIPFYVDDVQITATEAIAIEKNIPDLAKKLGSSYALGAAIDQTALDPKDPHSELLTKHFNSITAGNFMKMDAMQPTEGKFVWSEADKLVNFAAANNMQVRGHTLLWHSQVPDWFFTDPNDPSKPATREQLMQRMKTHIQTIVSRYKGKVHTWDVVNEVISDGGGLRNQASGSKWRDIIGDVDGDGDDSDYIELAFRYAREADPDAVLVINDYGIEGSVSKMNDMVKLVEKLLAKGTPIDAIGFQMHVSMYGPDIKQIREAFNRAAALGVHIQVTELDMSIYSGNSEQEKPVTDEMMLEQAYRYRALFDLFKEFDDRGVMDSVTLWGLADDGTWLDDFPVKGRKDAPLLFDRKLKAKPAYWALVDPSTLPVYRNEWTASQAKVSLPDRKGQEDIIWGAVRALPFSHVIEGAVGTTGEVKTLWDGKQLNLRIEVKDATRLKGDQVEVFVSPEDMTAGKKNSTPKDGQYIFNRDGGKGKDQKLYQVKENKSGYVVYASLPLSSADLAAGKVLSLDFRITDKQPNGKTSIVVWNDVNNQQPQKTENRGKLKLGFDLKHAKVMYGTPTVDGKEDKLWKKAVTITTDVKVTGNSGAKAKAKLLWDEKYLYVLAEVKDPLLSKKSANAHEQDSIELFIDLNKNQTNSYEEDDAQYRVNFDNETSFGGSPRKELFKSATRLTKEGYIVEAAIPLENVRTKESKWIGFDLQVNDDGAGDGKRSSVFMWSDPSGNSYRDTSGFGSLLLMKK", "sequence_length": 1086, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "448d2565b98f601e2c984e48262d746d365a99d4ade5ef66a213253552498f7f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O69230.json", "taxon_id": "198119", "uniprot_accession": "O69230", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermoanaerobacterium saccharolyticum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm9-1-pf06452.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06452", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm9-1-pf06452.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/slh-pf00395.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00395", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/slh-pf00395.yaml" } ], "pfam_ids": [ "PF00331", "PF00395", "PF02018", "PF06452" ], "protein_name": "Endo-1,4-beta-xylanase A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMKNNVDRIVSIVTALIMIFGASLFSPPIRVFADDTNINLVSNGDFESGTIDGWIKQGNPTLAVTTEQAIGQYSMKVTGRTQTYEGPAYSFLGKMQKGESYSVSLKVRLVSGQNSSNPLITVTMFREDDNGKHYDTIVWQKQVSEDSWTTVSGTYTLDYIGTLKTLYMYVESPDPTLEYYIDDVVVTTQNPIQVGNVIANETFENGNTSGWIGTGSSVVKAVYGVAHSGDYSLLTTGRTANWNGPSYDLTGKIVPGQQYNVDFWVKFVNGNDTEQIKATVKATSDKDNYIQVNDFANVNKGEWTEIKGSFTLPVADYSGISIYVESQNPTLEFYIDDFSVIGEISNNQITIQNDIPDLYSVFKDYFPIGVAVDPSRLNDADPHAQLTAKHFNMLVAENAMKPESLQPTEGNFTFDNADKIVDYAIAHNMKMRGHTLLWHNQVPDWFFQDPSDPSKSASRDLLLQRLKTHITTVLDHFKTKYGSQNPIIGWDVVNEVLDDNGNLRNSKWLQIIGPDYIEKAFEYAHEADPSMKLFINDYNIENNGVKTQAMYDLVKKLKSEGVPIDGIGMQMHININSNIDNIKASIEKLASLGVEIQVTELDMNMNGNISNEALLKQARLYKQLFDLFKAEKQYITAVVFWGVSDDVTWLSKPNAPLLFDSKLQAKPAFWAVVDPSKAIPDIQSAKALEGSPTIGANVDSSWKLVKPLYVNTYVEGTVGATATVKSMWDTKNLYLLVQVSDNTPSNNDGIEIFVDKNDDKSTSYETDDERYTIKRDGTGSSDITKYVTSNADGYVAQLAIPIEDISPAVNDKIGFDIRINDDKGNGKIDAITVWNDYTNSQNTNTSYFGDIVLSKSAQIATAIYGTPVIDGKVDDIWNNVEPISTNTWILGSNGATATQKMMWDDKYLYVLADVTDSNLNKSSINPYEQDSVEVFVDQNNDKTTYYENDDGQYRVNYDNEQSFGGSTNSNGFKSATSLTQSGYIVEEAIPWTSITPSNGTIIGFDLQVNNADENGKRTGIVTWCDPSGNSWQDTSGFGNLLLTGKPSGALKKGVTFDDIKNSWAKDAIEVLASRHIVEGMTDTQYEPNKTVTRAEFTAMILRLLNIKEEQYSGEFSDVNSGDWYANAIEAAYKAGIIEGDGKNARPNDSITREEMTQ", "sequence_length": 1157, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "496955bf2c5fc5212f258e9f1f90e674ad4b06b5ba2400a167b03e84d535eab0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P36917.json", "taxon_id": "28896", "uniprot_accession": "P36917", "uniprot_release": "2026_03" } ], "pfam_id": "PF06452", "short_name": "CBM9_1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/thh1-tom1-tom3-domain-ipr009457.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009457", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/thh1-tom1-tom3-domain-ipr009457.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/thh1-tom1-3-dom-pf06454.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06454", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/thh1-tom1-3-dom-pf06454.yaml" } ], "pfam_ids": [ "PF06454" ], "protein_name": "Protein TOM THREE HOMOLOG 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSGGLEMMSSSAIVAFNLKEGKNWWWDVNESPVWQDRIFHVLAVLYGIVSVIAVIQLVRIQLRVPEYGWTTQKVFHFLNFMVNGVRALVFLFRRDAQNMQPEILQHILLDIPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPSFFTINAVVYVIQIALWLVLWWKPVHLMVIISKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDVLDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ", "sequence_length": 293, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "07e54055949b635a69c8efbbcf2bbffc3f3acb11bd62228c4ac987e80ebec817", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q948R8.json", "taxon_id": "3702", "uniprot_accession": "Q948R8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/viral-replication-complex-formation-and-maintenance-go0046786.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0046786", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/viral-replication-complex-formation-and-maintenance-go0046786.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/thh1-tom1-tom3-domain-ipr009457.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009457", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/thh1-tom1-tom3-domain-ipr009457.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/thh1-tom1-3-dom-pf06454.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06454", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/thh1-tom1-3-dom-pf06454.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9FEG2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06454" ], "protein_name": "Tobamovirus multiplication protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e2d2c86e6bb4c1e8ca8e9f7d5a2aae2ad285cc092f6ab048026a2c833c764e56", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTDSGLMMPAEIAGILTTAITSWWDDVNESTQWQDGIFFALCGAYALVSAVALVQLIRIQMRVPEYGWTTQKVFHLMNFVVNGVRAVLFGFHMQVFLVHPKALCWVLLDLPGLLFFSAYTLLVLFWAEIYHQARSLPTDKLRITYISVNVAVYLAQIGIWAYIWVHDNSTVELVGKIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCVVVAVSAFDKDLTLDVLDHPVLNLIYYMVVEVLPSALVLFILRKLPPKRVSAQYHPIQ", "sequence_length": 291, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e2d2c86e6bb4c1e8ca8e9f7d5a2aae2ad285cc092f6ab048026a2c833c764e56", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FEG2.json", "taxon_id": "3702", "uniprot_accession": "Q9FEG2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/viral-replication-complex-formation-and-maintenance-go0046786.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0046786", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/viral-replication-complex-formation-and-maintenance-go0046786.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/thh1-tom1-tom3-domain-ipr009457.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009457", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/thh1-tom1-tom3-domain-ipr009457.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/thh1-tom1-3-dom-pf06454.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06454", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/thh1-tom1-3-dom-pf06454.yaml" } ], "pfam_ids": [ "PF06454" ], "protein_name": "Tobamovirus multiplication protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRIGGVEVTKFASEMMSSSSSSAVEMLNLKEASNWWSDVNESPIWQDRIFHVLAVLYGIVSLVAVIQLVRIQLRVPEYGWTTQKVFHFLNFVVNGVRAVVFVFRRNVQFMQPEILQHILLDIPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPSFFTINAVVYVVQIALWLVLWWKPVRVMVILSKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFAAFDEGANLDVLDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIR", "sequence_length": 303, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "01df72d9796153ea6de00537707bbb8967f4e38303fa622ed3d3a6a0b9122ede", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZUM2.json", "taxon_id": "3702", "uniprot_accession": "Q9ZUM2", "uniprot_release": "2026_03" } ], "pfam_id": "PF06454", "short_name": "THH1_TOM1-3_dom", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Listeria monocytogenes serotype 4b (strain F2365)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/inlj-ig-pf22508.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22508", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/inlj-ig-pf22508.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/int-ef-hand-pf22350.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22350", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/int-ef-hand-pf22350.yaml" } ], "pfam_ids": [ "PF06458", "PF22350", "PF22508" ], "protein_name": "Internalin J", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTSKIIIASLVSLTLVSNPILTFAATNDVIDSTTEITTDKEISSTQPTIKTTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIADMTGIEKLTGLTKLICTYNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKIDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITALDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLNCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTKLDVSHNTKLKSLSCVNAHIQDFSSVGKIPVLNNNLDAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQPIKGEDVTVHYLDDKGEKLAADEVLSGNLDDPYTSSAKDIPDYTLTTTPDNATGTFTTTSQSVTYVYTKNIVAAEPVTVNYVDDTGKTLAPSETLNGNVGDTYNATAKQIDGYTLSTTPNNATGTFNTSSQTVTYVYTKNIVAAEPVTVNYVDDTGKTLAPSETLNGNVGDTYNATAKQIDGYTLSAEPTNATGQFTSSAQTVNYIYTKNPAPEKGVVEIHYVDENNKQLSSATKISGTVGDNYTTEPKNIDGYTLTTTPDNATGTFNTSSQTVTYVYTKNIVAAEPVTVNYVDANGKTLAPSETLNGTIGDTYNATAKQIDGYTLSAEPTNATGQFTNSAQTVNYIYTKNTNIDQPLPDKKTTKPSNLKTTEVKKASDTLPKTGDSTPWKSALLGVFLSSTALVIWKKKK", "sequence_length": 916, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "621d3b3c6def17a0cecc9dc8599e5b484148f506666c5ce5ec3889872abb0e04", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q71VU0.json", "taxon_id": "265669", "uniprot_accession": "Q71VU0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Listeria monocytogenes serotype 4b (strain F2365)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/inlk-d3-pf18981.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18981", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/inlk-d3-pf18981.yaml" } ], "pfam_ids": [ "PF06458", "PF08191", "PF12799", "PF18981", "PF23598" ], "protein_name": "Internalin I", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKKFSIVIISVLLLGYLAPFDTLLVGADETTVTEDTTVKTAETETATEATESESGSDNEKAEEPKEAEASKETTEKEEKAKTKEPASNIKTEINTDKSQLKQTNLKAVVPAGSTYNSLFPDDNLAKKLAVIITGNAAATGNESVDSAALLAISQLDLSGETGNDPTDISNIEGLQYLENLTSLNLSENNISDLAPIKDLVNLVSLNLSSNRTLVNLSGVEGLVNLQELNVSANKALEDISQVAALPVLKEISAQGCNIKTLELDNPAGAILPELETFYLQENDLTDLTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQLIDASNCTDLETLGDISGLSELEMIQLSGCSKLKEITSLKDLPNLVNITADSCAIEDLGTLNNLPKLQTLILSDNKDLTNINAITDMPQLKTLALDGCGITSIGTLDNLPKLEKLDLKENQLTSISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINVSNNVIRTVGKMTELPSLKEFYAQNNNVSDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRIPSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSDLTNLTELNLRDNGYISDISGLSTLSRLIYLNLDSNKIKDISALSNLTTLQELTLENNQIEDISALSDLDNLNKLALSKNKIIDISPAANMVNRGASVTASNQTYTLPTVLSYQSSFTIDNPVVWYDGTPLAPSSIAHSGTYKDGEITWTNMTAASSSTEFNFNRLKDGLTFSGTITQPYKSAVKVTANAEQTYTIGDTISEEQFLKDVNAKSSDGAPVTSDFATVVDLNTFGEYEVTLTSEKDGIQGDSCKVIVKVLHGAPVISADQTINYDKHATITEKQFLEDVHASTDLNTAITTNFSTAVNLNKGGDYTVALNSENEDGVKAETVYVTVTVDKDPAPIISAKTDITYDKFSKKTEAAFLDDIDADTNDGSIITSNFATAVNLDKAGDYTVTLNSINSDGVASTPTAIIVHVEKEKIATISANTAQQYEKYAEINETQFLKDVHASINASPTTAVLESDFETVVKLDVPGTYTVTITATNEDGGVSAPKEVSVIVKKLPAPEITADKEITYPKFDEVSEAEFLSDIHATINEKNVTITSNFSADVNLNKAGDYTVTLNATNEDGVKATPVEVIVHVQQGERPVITADATISYDKFANITEAKFLEDIHATSSDGQSSTVITSNFETATNFKTAMSYTVTLNAVNEDGISAEPVAVTVTINKEPAATLKADAEVSYAKNEAVTESDFFKDVHLEGAEAPSTAKATSNFDSVVDRSKTGDYTVTINATNEDGAVSTPIEVIVHIGAESAPVITANAEVKYNKHEQTDERRFLYDSDAKIDEANVEIKTDFAEKVDINKVGTYTVTLTATNEDGQAANPVEVSVIVSDAAAEKVNVKYVDENGAEISAAETLTGNLDDAFSIDAKSIAGYKCDATLSGVFSTVEQTVVFHYKAIEPGVVTIKYEDANGKAVAEDKQITGEVGDDFEAEAQTVSGYSCRAIASGKITEEPQTITFTYTTATPSKKSGEITVQYVDESGKKLADSKKVTGDIDDSYSVEAKAIDGYSVVGDDSAKGVFTEKSQTVTFKYKKNTQVSKDEPKVKGKTNQPPSADTKLKVDNNTLPATGDTENMALAVLIGFNMLLVASIFLFRKPKTNQ", "sequence_length": 1775, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f3eed26a136d7c735c21ca6385df0d847c819cf2d7951ed2673f900311dc7a00", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q723X5.json", "taxon_id": "265669", "uniprot_accession": "Q723X5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/inlj-ig-pf22508.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22508", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/inlj-ig-pf22508.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/int-ef-hand-pf22350.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22350", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/int-ef-hand-pf22350.yaml" } ], "pfam_ids": [ "PF06458", "PF22350", "PF22508" ], "protein_name": "Internalin J", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTTKIVIASLVSLTMVSNPLLTFAATNDVIDNTTEITTDKETSSTQPTIKNTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQPIKGEDVTVHYLDDKGEKLADDEVLSGNLDDPYTSSAKDIPDYTLTTTPDNATGTFTTTSQSVTYVYTKNIVAAEPVTVNYVDDTGKTLSPSEILNGNVGDTYNATAKQIDGYTLSAEPTNATGQFTSSAQTVNYIYTKNPAPEKGVVEIHYVDEDNKQLNSTTEISGTIGDNYTTEPKTIEGYTLTTTPGNATGTFTTGSQTVTYVYTKNIEAAEPITVNYVDANGKTLAPSETLNGNVGDTYKATAKQIDGYTLSAEPTNATGQFTSSAQTVNYIYTKNTNTDQPLPTKKPTNTTPTKPSNLKTTEVKKASDTLPKTGDSAPWKSALLGVFLSSTALVIWKKKK", "sequence_length": 851, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a0c5d6ba2539082e1adc2287a72c391107cbdd06ef1f14e31e2efa5c081225cc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8Y3L4.json", "taxon_id": "169963", "uniprot_accession": "Q8Y3L4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/inlk-d3-pf18981.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18981", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/inlk-d3-pf18981.yaml" } ], "pfam_ids": [ "PF06458", "PF08191", "PF12799", "PF18981", "PF23598" ], "protein_name": "Internalin I", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKKFSIVIISVLLLGYLAPFDTLLVGADETTVSEDTAVKTAEADSATEGIESETGSDDETAEEPKEAKEAEASKETTEKEEKAKTEEPASNIKTEINTDKSQLKQTSLKAAVPAGSTYNSLFPDDNLAKKLAVIITGNAAATGNESVDSAALLAISQLDLSGETGNDPTDISNIEGLQYLENLTSLNLSENNISDLAPLKDLVNLVSLNLSSNRTLVNLSGVEDLVNLQELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQENDLTNLTSLAKLPKLKNLYIKGNASLKSLETLNGATKLQLIDASNCTDLETLGDISGLSELEMIQLSGCSKLKEITSLKNLPNLVNITADSCAIEDLGTLNNLPKLQTLVLSDNENLTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLEKLDLKENQITSISEITDLPRLSYLDVSVNNLTTIGDLKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINISNNVIRTVGKMTELPSLKEFYAQNNSISDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQSLDVHSNRITSTSVIHDLPSLETFNAQTNLITNIGTMDNLPDLTYVNLSFNRIPSLAPIGDLPNLETLIVSDNNSYLRSLGTMDGVPKLRILDLQNNYLNYTGTEGNLSSLSDLTNLTELNLRNNVYIDDISGLSTLSRLIYLNLDSNKIEDISALSNLTNLQELTLENNKIENISALSDLENLNKLVVSKNKIIDISPVANMVNRGAIVTASNQTYTLPTVLSYQSSFTIDNPVIWYDGTLLAPSSIGNSGNYKDGKITWTNMTATSSSTLFNFNRLKDGLTFSGTVTQPYKSAAKVTADAEQTYTIGDTISEEQFLKDVNAKSSDGAPVTSDFATVVDLNTFGEYEVTLTSEKDGIQGDSCKVIVKVLHGAPVISADQTISYDKHATITEKQFLEDIHASTDLDTAITTNFSTAVNLNKGGDYTVALNSENEDGVKAETVYVTVTVNKDPAPIISAKTEITYDKFSKKTEAAFLDDIDADTNDGSIVTSNFATAVNLDKAGDYTVTLNSINSDGVAGTPTAIIVHVEKEKIATISTNTAQQYEKYAKINETQFLKDVHASINASPTTAVLESDFETVVKLDVPGTYTVTITATNEDGGVSAPKEVSVIVRKIPAPEITADKEITYPKFDEVSEAEFLNDIHATISDKNVAITSNFSTDVNLNKAGDYTVTLNATNEDGVKATPVEVIVHVQQGERPVITADATISYDKFANITEAKFLEDIHATSSDGQSSTVITSNFQTATNFKTAMSYTVTLNAVNEDGISAEPVAVTVTINKEPAAALKADAEVSYAKNEAVTESDFFKDVHLEGTEAPSTAKATSNFDSVVDRSKTGDYTVTINATNEDGAVSTPIEVIVHIEAESAPVITANAEVKYNKHEQTDERRFLYDSEAKIDEANVEIKTDFAEKVDINKVGTYTVTLTATNEDGQAANPVEVSVIVSDAAAEKVNVKYVDENGSEISAAETLTGNLDETFSIDAKSIAGYKCDATLSGVFSTVEQTVVFHYKAIKPGVVTIKYEDTNGKAVDEDKQITGEVGDDFEAEAQTVSGYSCRAIASGKITEEPQTITFTYSTATPSKKSGEITVQYVDESGKKLADSKKVTGNIDDSYSVEAKAIEGYSVVGDDSAKGVFTEKSQTVTFKYKKNTQVSKDDPKVKGKTNQPSSTDTKLKVDNNSLPATGDTENMILAVLIGFNMLIVASIFLFRKPKTNQ", "sequence_length": 1778, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9919e52d07e6da77a6cf39c8bb4f7c64621192058d7b234f2c922de4c90805b8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8YA32.json", "taxon_id": "169963", "uniprot_accession": "Q8YA32", "uniprot_release": "2026_03" } ], "pfam_id": "PF06458", "short_name": "MucBP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A2A8L1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00176", "PF00271", "PF00385", "PF00628", "PF06461", "PF06465", "PF08073", "PF08074" ], "protein_name": "ATP-dependent chromatin remodeler CHD5", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0e0488b9fd831a836af570fe8f60f0b6937ff4fbe38fd33b68573bba65851a4a", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRGPLGTEEELPRLFAEEMENEEEMSEEEDGGLEGFEDFFPAEPVSLPKKKPKKLKESKSSKGKRKKKEGSNDEMSDNEEDLEEKSESEGSDYSPTKKKKKKLKEKKEKKEKKEKRKKRGEDEDDNDDGGLKEPKSSGQLMAEWGLDDVDYLFSEDDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETVTIAPPLAISPQQVPQTLPIRKAKTKEGKGPGVRKKNKGAKDSKKKGRGKRVAGLKFRFGGISKRKKGSSSEEDEREDSDLDNASIHSSSVRSECSAALGKKNKRRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDEEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEPPAPFVVGLPGPEVEPGMPPPRPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMVHRILNHSFDKKGDIHYLIKWKDLPYDQCTWEIDEIDIPYYDNLKQAYWGHRELMLGEDARLPKRLVKKGKKLKDDKQEKPPDTPIVDPTVKFDKQPWYIDATGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRGGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGMMSQGQRPTTPIPDIQSTKGGSLTAGAKKKHGSTPPGDNKDVEDSSVIHYDDAAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREVIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLVPEGAEGKKPGEVISSDPNTPVPASPAQLPPAPLGLTDKMEAQLGYTDEKESGMQKPKKSLEIQTLPTALDRVEGEDKHQSSDSKDRAREERTEEVEKAQGSPEQPLKEEVLPDKEPIPDKPELSLGHSGDFRPDDPKTEEKEPGETQQNGDREEDEEGKKEDKNGKFKFMFNIADGGFTELHTLWQNEERAAVSSGKIYEIWHRRHDYWLLAGIVTHGYARWQDIQNDPRYMILNEPFKSEIHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLTNRAGDPTIQQTSSRRRDFPLFQRSFPAEPSHLPNPRGREKLQPF", "sequence_length": 1946, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0e0488b9fd831a836af570fe8f60f0b6937ff4fbe38fd33b68573bba65851a4a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2A8L1.json", "taxon_id": "10090", "uniprot_accession": "A2A8L1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chdct2-pf08074.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08074", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chdct2-pf08074.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chdii-sant-like-pf06461.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06461", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chdii-sant-like-pf06461.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chdnt-pf08073.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08073", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chdnt-pf08073.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1087-pf06465.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06465", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1087-pf06465.yaml" } ], "pfam_ids": [ "PF00176", "PF00271", "PF00385", "PF00628", "PF06461", "PF06465", "PF08073", "PF08074" ], "protein_name": "ATP-dependent chromatin remodeler CHD3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD", "sequence_length": 2000, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "89f4c0f0235b2362d8b35b76877dfa8b1f771c2869bf26fab06158778f34962e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q12873.json", "taxon_id": "9606", "uniprot_accession": "Q12873", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chdct2-pf08074.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08074", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chdct2-pf08074.yaml" }, { "cited_uniprot_accession": "", "commit": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chdnt-pf08073.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chromo-pf00385.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00385", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chromo-pf00385.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1087-pf06465.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06465", "section": "canonical_examples", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chdii-sant-like-pf06461.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06461", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chdii-sant-like-pf06461.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chdnt-pf08073.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08073", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chdnt-pf08073.yaml" }, { 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"url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4704-pf15787.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/nbch-wd40-pf20426.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20426", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/nbch-wd40-pf20426.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/neurobeachin-pf20425.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20425", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/neurobeachin-pf20425.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P50851", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02138", "PF06469", "PF13385", "PF14844", "PF15787", "PF20425", "PF20426" ], "protein_name": "Lipopolysaccharide-responsive and beige-like anchor protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "989342fd5b505664a86310e50f680ac0ccf33aa5a0c716969ba010991eb7a4d3", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MASEDNRVPSPPPTGDDGGGGGREETPTEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETVFNLLVGGQFDLEMNFIIQEGESINCMVDLLEKCDITCQAEVWSMFTAILKKSIRNLQVCTEVGLVEKVLGKIEKVDNMIADLLVDMLGVLASYNLTVRELKLFFSKLQGDKGRWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIAKWPYQNGFTFHTWLRMDPVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIVTSIKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMTAVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLAEHHKLLLYDGKLSSAIAFTYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLFAQLDYRQYLSDEIDLTICSTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKSHVSRAVLELCLAFSKYLSNLQNGMPLLKQLCDHVLLNPAIWIHTPAKVQLMLYTYLSTEFIGTVNIYNTIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKGLDGPRPNQKEMLSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLLVALMSEHPNSMIPAFDQRNGLRVIYKLLASKSEGIRVQALKAMGYFLKHLAPKRKAEVMLGHGLFSLLAERLMLQTNLITMTTYNVLFEILIEQIGTQVIHKQHPDPDSSVKIQNPQILKVIATLLRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPKNSDEQKITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSITHSKVTFEIHKENLANIFREQQGKVDEEIGLCSSTSVQAASGIRRDINVSVGSQQPDTKDSPVCPHFTTNGNENSSIEKTSSLESASNIELQTTNTSYEEMKAEQENQELPDEGTLEETLTNETRNADDLEVSSDIIEAVAISSNSFITTGKDSMTVSEVTASISSPSEEDASEMPEFLDKSIVEEEEDDDYVELKVEGSPTEEANLPTELQDNSLSPAASEAGEKLDMFGNDDKLIFQEGKPVTEKQTDTETQDSKDSGIQTMTASGSSAMSPETTVSQIAVESDLGQMLEEGKKATNLTRETKLINDCHGSVSEASSEQKIAKLDVSNVATDTERLELKASPNVEAPQPHRHVLEISRQHEQPGQGIAPDAVNGQRRDSRSTVFRIPEFNWSQMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQVMDNMVMACGGILPLLSAATSATHELENIEPTQGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKSMSSGGILRQCLRLVCAVAVRNCLECQQHSQLKTRGDKALKPMHSLIPLGKSAAKSPVDIVTGGISPVRDLDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNERHSQSCTETGSENENVSLSEITPAAFSTLTTASVEESESTSSARRRDSGIGEETATGLGSHVEVTPHTAPPGVSAGPDAISEVLSTLSLEVNKSPETKNDRGNDLDTKATPSVSVSKNVNVKDILRSLVNIPADGVTVDPALLPPACLGALGDLSVEQPVQFRSFDRSVIVAAKKSAVSPSTFNTSIPTNAVSVVSSVDSAQASDMGGESPGSRSSNAKLPSVPTVDSVSQDPVSNMSITERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREDEKMCDHLIRAAKYRDHVTATQLIQKIINILTDKHGAWGNSAVSRPLEFWRLDYWEDDLRRRRRFVRNPLGSTHPEATLKTAVEHVCIFKLRENSKATDEDILAKGKQSIRSQALGNQNSENEILLEGDDDTLSSVDEKDLENLAGPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQVSPLMFTDKAQQDVIMVLKFPSNSPVTHVAANTQPGLATPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQSIQVHSQCFVITSDNRYILVCGFWDKSFRVYSTDTGRLIQVVFGHWDVVTCLARSESYIGGNCYILSGSRDATLLLWYWNGKCSGIGDNPGSETAAPRAILTGHDYEVTCAAVCAELGLVLSGSQEGPCLIHSMNGDLLRTLEGPENCLKPKLIQASREGHCVIFYENGLFCTFSVNGKLQATMETDDNIRAIQLSRDGQYLLTGGDRGVVVVRQVSDLKQLFAYPGCDAGIRAMALSYDQRCIISGMASGSIVLFYNDFNRWHHEYQTRY", "sequence_length": 2863, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "989342fd5b505664a86310e50f680ac0ccf33aa5a0c716969ba010991eb7a4d3", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P50851.json", "taxon_id": "9606", "uniprot_accession": "P50851", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1088-pf06469.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1088-pf06469.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4704-pf15787.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15787", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4704-pf15787.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/nbch-wd40-pf20426.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20426", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/nbch-wd40-pf20426.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/neurobeachin-pf20425.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20425", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/neurobeachin-pf20425.yaml" } ], "pfam_ids": [ "PF02138", "PF06469", "PF13385", "PF14844", "PF15787", "PF20425", "PF20426" ], "protein_name": "Neurobeachin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASEKPGPGPGLEPQPVGLIAVGAAGGGGGGSGGGGTGGSGMGELRGASGSGSVMLPAGMINPSVPIRNIRMKFAVLIGLIQVGEVSNRDIVETVLNLLVGGEFDLEMNFIIQDAESITCMTELLEHCDVTCQAEIWSMFTAILRKSVRNLQTSTEVGLIEQVLLKMSAVDDMIADLLVDMLGVLASYSITVKELKLLFSMLRGESGIWPRHAVKLLSVLNQMPQRHGPDTFFNFPGCSAAAIALPPIAKWPYQNGFTLNTWFRMDPLNNINVDKDKPYLYCFRTSKGVGYSAHFVGNCLIVTSLKSKGKGFQHCVKYDFQPRKWYMISIVHIYNRWRNSEIRCYVNGQLVSYGDMAWHVNTNDSYDKCFLGSSETADANRVFCGQLGAVYVFSEALNPAQIFAIHQLGPGYKSTFKFKSESDIHLAEHHKQVLYDGKLASSIAFTYNAKATDAQLCLESSPKENASIFVHSPHALMLQDVKAIVTHSIHSAIHSIGGIQVLFPLFAQLDNRQLNDSQVETTVCATLLAFLVELLKSSVAMQEQMLGGKGFLVIGYLLEKSSRVHITRAVLEQFLSFAKYLDGLSHGAPLLKQLCDHILFNPAIWIHTPAKVQLSLYTYLSAEFIGTATIYTTIRRVGTVLQLMHTLKYYYWVINPADSSGITPKGLDGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDELQSILNYLLTMHEDENIHDVLQLLVALMSEHPASMIPAFDQRNGIRVIYKLLASKSESIWVQALKVLGYFLKHLGHKRKVEIMHTHSLFTLLGERLMLHTNTVTVTTYNTLYEILTEQVCTQVVHKPHPEPDSTVKIQNPMILKVVATLLKNSTPSAELMEVRRLFLSDMIKLFSNSRENRRCLLQCSVWQDWMFSLGYINPKNSEEQKITEMVYNIFRILLYHAIKYEWGGWRVWVDTLSIAHSKVTYEAHKEYLAKMYEEYQRQEEENIKKGKKGNVSTISGLSSQTTGAKGGMEIREIEDLSQSQSPESETDYPVSTDTRDLLMSTKVSDDILGNSDRPGSGVHVEVHDLLVDIKAEKVEATEVKLDDMDLSPETLVGGENGALVEVESLLDNVYSAAVEKLQNNVHGSVGIIKKNEEKDNGPLITLADEKEDLPNSSTSFLFDKIPKQEEKLLPELSSNHIIPNIQDTQVHLGVSDDLGLLAHMTGSVDLTCTSSIIEEKEFKIHTTSDGMSSISERDLASSTKGLEYAEMTATTLETESSSSKIVPNIDAGSIISDTERSDDGKESGKEIRKIQTTTTTQAVQGRSITQQDRDLRVDLGFRGMPMTEEQRRQFSPGPRTTMFRIPEFKWSPMHQRLLTDLLFALETDVHVWRSHSTKSVMDFVNSNENIIFVHNTIHLISQMVDNIIIACGGILPLLSAATSPTGSKTELENIEVTQGMSAETAVTFLSRLMAMVDVLVFASSLNFSEIEAEKNMSSGGLMRQCLRLVCCVAVRNCLECRQRQRDRGNKSSHGSSKPQEVPQSVTATAASKTPLENVPGNLSPIKDPDRLLQDVDINRLRAVVFRDVDDSKQAQFLALAVVYFISVLMVSKYRDILEPQRETTRTGSQPGRNIRQEINSPTSTVVVIPSIPHPSLNHGFLAKLIPEQSFGHSFYKETPAAFPDTIKEKETPTPGEDIQVESSIPHTDSGIGEEQVASILNGAELETSTGPDAMSELLSTLSSEVKKSQESLTENPSETLKPATSISSISQTKGINVKEILKSLVAAPVEIAECGPEPIPYPDPALKRETQAILPMQFHSFDRSVVVPVKKPPPGSLAVTTVGATTAGSGLPTGSTSNIFAATGATPKSMINTTGAVDSGSSSSSSSSSFVNGATSKNLPAVQTVAPMPEDSAENMSITAKLERALEKVAPLLREIFVDFAPFLSRTLLGSHGQELLIEGLVCMKSSTSVVELVMLLCSQEWQNSIQKNAGLAFIELINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAADRREEEKMCDHLISAAKHRDHVTANQLKQKILNILTNKHGAWGAVSHSQLHDFWRLDYWEDDLRRRRRFVRNAFGSTHAEALLKAAIEYGTEEDVVKSKKTFRSQAIVNQNAETELMLEGDDDAVSLLQEKEIDNLAGPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDSAFKKIDTKVLAYTEGLHGKWMFSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYSLPRVGVGTSYGLPQARRISLATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRDTSDVKELIPEFYYLPEMFVNSNGYNLGVREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHLCFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQITDLVDQSIQINAHCFVVTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWYWSGRHHIIGDNPNSSDYPAPRAVLTGHDHEVVCVSVCAELGLVISGAKEGPCLVHTITGDLLRALEGPENCLFPRLISVSSEGHCIIYYERGRFSNFSINGKLLAQMEINDSTRAILLSSDGQNLVTGGDNGVVEVWQACDFKQLYIYPGCDAGIRAMDLSHDQRTLITGMASGSIVAFNIDFNRWHYEHQNRY", "sequence_length": 2946, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3357bd1b54708bfbb46a2e7e6f583fd0b1b20c226c1c7fbbaeb9981b0acf4c73", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NFP9.json", "taxon_id": "9606", "uniprot_accession": "Q8NFP9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1088-pf06469.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1088-pf06469.yaml" } ], "pfam_ids": [ "PF02138", "PF06469", "PF14844", "PF15787", "PF20425", "PF20426" ], "protein_name": "Neurobeachin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADIMRPPYSEIKRPDEIVRMTTADNLKFAVLIGLIEVGQVTNREVVNTVLHLLVGGEFDMELNFVIQDAQNIKHMLELLDHCPPNLQAEIWSVFIAILRKSVRNLQACTDVGLIEHVLVRLQRSETVVADLLIEMLGVLASYSITVKELKLLFGTMKATNGKWPRHSAKLLNVLRQMPHRNGPDVFFSFPGRKGSAMVLPPLAKWPYENGFTFTTWFRLDPINSVNIEREKPYLYCFKTSKGVGYTAHFVGNCLVLTSMKVKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCLVNGQLASSTEMAWFVSTNDPFDKCYIGATPELDEERVFCGQMSAIYLFSEALTTQQICAMHRLGPGYKSQFRFDNECYLNLPDNHKRVSHFQLLPATLGASALSGGSGSGTGSGTGNDASAAAAAAVAAGQQQQLQLQFQILAAEQEARAIDWSDEKLDLNAAFVKIRAVLTARNAVTLAGSSSTGTTAVATAAAAAAAAGAGAGTTAAATSAAAAAAATQNENDAAVGQQQHATHHHATAATGSADDPLGHLPTGNASSSSSSFEQLRRMSSVSSLNSMVGSADTEEVNQLKAVLYDGKLSNAIVFMYNPVATDGQLCLQSSPKGNVSYFVHTPHALMLQDVKAVVTHSIHCTLNSIGGIQVLFPLFSQLDMAHEGLGDIKRDPTLCSKLLGFICELVETSQTVQQHMIQNRGFLVISFMLQRSSREHLTLEVLGSFLNLTKYLVTCLSANSDLLLKQLFCFSFLTWQLLDHVLFNPALWIYTPANVQARLYSYLATEFLSDTQIYSNVRRVSTVLQTVHTLKYYYWVVNPRAKSGIIPKGLDGPRPAQKDILAIRAYILLFLKQLIMIGNGVKEDELQSILNYLTTMHEDENLHDVLQMLISLMSEHPSSMVPAFDVKHGVRSIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLLYEESLSLPTYNVLYEIMTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQTESLIDVKKLFLQDMTLLCNSNRENRRTVLQMSVWQEWLIAMAYIHPKSSEEQKISDMVYSLFRMLLHHAIKHEYGGWRVWVDTLAIVHSKVSYEEFKLQFAQMYEHYERQRTDNITDPALRQARPISTISGWEREELHQQQNGGSAAAVATNQTAAVKGSVSIASLEDVPPVVEEEVEELELEEVEIQEGPITEETEQKSVIANISDVYNEQLKTDATCNGNLEDVKEEEPVQQQIGDLEKQPEPSTPLGALRETLQLGDDMDVEELELATAKDALNAEQHVSRVLQASEAALNDCKMAVDDVLQESSSVLKDEEIELAVNEVVQGVLNNEKKTQSQDNKDNKEQPGEQDVNVSLLNSKNLLNNNNNNNNNSPSPTPTTATATAETEAETEVNANEIVSSTEAPKAETETSVAPEVETPETAKPSPIVPSPVLATNQKTEDAANKLNNNEKLAEISASPEPPIVVETPEADLLQLSDSETKPNKETEAEDSVALAVRDIVEQLIDKVIDATEAESASETKTETNNNEIPKKEKQTSEEPEDVETAETLAAAAKEIVQEVVEAALVMVQEESTQEKPEKGANSEEEKNEIGKEEILLQLEEKPASTEVQETKIEGDLKKPEDPKGHSSVEPKTPNLEEPKPQETEQQKSQEVAEELPQKPEEQVVAIVNQVLDTLVDDTVKAVAAEQTTQTSPAPEEQSPQILAMESPATSVRVKPTEVDSTTQTTPKNEAGSSLLVEQVQQVLQEDDAQQSAGMTIEDEDYSNQQAAAAVENANSSQLDANHYGPGNPESKQQQQRSKSGSTRPMFSPGPTRPPFRIPEFKWSYIHQRLLSDVLFSLETDIQVWRSHSTKSVLDFVNSSENAIFVVNTVHLISQLADNLIIACGGLLPLLASATSPNSELDVLEPTQGMPLEVAVSFLQRLVNMADVLIFATSLNFGELEAEKNMSSGGILRQCLRLVCTCAVRNCLECKERTRYNVGALARDVPGAAHLQALIRGAQASPKNIVESITGQLSPVKDPEKLLQDMDVNRLRAVIYRDVEETKQAQFLSLAIVYFISVLMVSKYRDILEPPAEPQIQRQSPVLQRTAGGGGRQIQDSDYEIIVVDENNPSVLADNDSHSSGPPSIKANQTTTIATTTTTTATTHINNNNTKTTTSNAPTATIKIQQQPLSPPKPLVPQKLPKSVDSDVGSLNMNSTENEVPEVESSSEILIDDHKPSHSNDESWTDVNLNEDAAVQAASAGIVVGLVDNRGNVISDKHDPSHHNQQQQQQAGIIGQQQQHGSLGHSERGDKPDSEISVVRVPDGYGGAGSGGGVNSGQGQGVPSNQRPRPEELPMKAPALVAQLPLTTPSREASLTQKLEIALGPVCPLLREIMVDFAPFLSKTLVGSHGQELLMEGKGLTTFKNSHSVVELVMLLCSQEWQNSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHADFESQCAQTLLERREEERMCDHLITAARRRDNVIASRLLEKVRNIMCNRHGAWGDSSSTSSGGAIVGAVQKSPYWKLDAWEDDARRRKRMVQNPRGSSHPQATLKAALENGGPEDAILQTRDEFHTQIAVSRTHPSGQHNGELLDDAELLIEDRELDLDLTGPVNISTKARLIAPGLVAPGTVSITSTEMFFEVDEEHPEFQKIDGEVLKYCDHLHGKWYFSEVRAIFSRRYLLQNVALEIFLASRTSILFAFPDQHTVKKVIKALPRVGVGIKYGIPQTRRASMMSPRQLMRNSNMTQKWQRREISNFEYLMFLNTIAGRTYNDLNQYPIFPWVLTNYESKDLDLSLPSNYRDLSKPIGALNPSRRAYFEERYESWDSDTIPPFHYGTHYSTAAFTLNWLVRVEPFTTMFLALQGGKFDYPDRLFSSVSLSWKNCQRDTSDVKELIPEWYFLPEMFYNSSGYRLGHREDGALVDDIELPPWAKSPEEFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAIRATNVFYYLTYEGSVDLDGVLDPVMREAVENQIRNFGQTPSQLLMEPHPPRSSAMHLSPMMFSAMPEDLCQMLKFYQNSPVIHISANTYPQLSLPSVVTVTAGHQFAVNRWNCNYTASVQSPSYAESPQSPGSNQPLTIDPVLAVHGTNNNSNAASRRHLGDNFSQMLKIRSNCFVTTVDSRFLIACGFWDNSFRVFATETAKIVQIVFGHFGVVTCMARSECNITSDCYIASGSADCTVLLWHWNARTQSIVGEGDVPTPRATLTGHEQAVTSVVISAELGLVVSGSSNGPVLIHTTFGDLLRSLDPPAEFHSPELITMSREGFIVINYDKGNVAAYTINGKKLRHETHNDNLQCMLLSRDGEYLMTAGDRGIVEVWRTFNLAPLYAFPACNAGIRSLALTHDQKYLLAGLSTGSIIVFHIDFNRWHHEYQQRY", "sequence_length": 3466, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "663c1512a404200f28c598560c4c26c90cde694687999345cb5f1716888b8ead", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q9W4E2.json", "taxon_id": "7227", "uniprot_accession": "Q9W4E2", "uniprot_release": "2026_03" } ], "pfam_id": "PF06469", "short_name": "DUF1088", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06475", "short_name": "Glycolipid_bind", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1090-pf06476.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06476", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1090-pf06476.yaml" } ], "pfam_ids": [ "PF06476" ], "protein_name": "Protein YqjC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKYRIALAVSLFALSAGSYATTLCQEKEQNILKEISYAEKHQNQNRIDGLNKALSEVRANCSDSQLRADHQKKIAKQKDEVAERQQDLAEAKQKGDADKIAKRERKLAEAQEELKKLEARDY", "sequence_length": 122, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f5d5a934ef8848c50d476ce6d6cf9d2211994d679873c5c5d0bac9dcda90b136", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P42616.json", "taxon_id": "83333", "uniprot_accession": "P42616", "uniprot_release": "2026_03" } ], "pfam_id": "PF06476", "short_name": "DUF1090", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06477", "short_name": "DUF1091", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rna-binding-protein-tab2-atab2-c-terminal-ipr046761.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046761", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rna-binding-protein-tab2-atab2-c-terminal-ipr046761.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rna-binding-protein-tab2-like-n-terminal-ipr046760.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046760", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rna-binding-protein-tab2-like-n-terminal-ipr046760.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tab2-like-c-pf20429.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20429", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tab2-like-c-pf20429.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tab2-like-n-pf06485.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06485", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tab2-like-n-pf06485.yaml" } ], "pfam_ids": [ "PF06485", "PF20429" ], "protein_name": "Protein TAB2 homolog, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATLGFNTRRIQTPSLPRIPKPSSFTKPIKTHHLFSSETLLKRCRFVSRSLPESSLSITKEQEVANEVEEDDPTSELSYLDPESDADSIKEWELDFCSRPILDSRGKKIWELVVCDASLSLQVTKYFPNNVINSITLKDAIVTITQDLGVPLPEKIRFFRSQMQTIITKACKELAIKAVPSKRCLSLFLWLQERYDTVYTRHPGFQKGSLPLLSLDNPFPMNLPENLFGEKWAFVQLPYSAVREEISDFDEKFVFGASLDLDLLGIEVDENTLIPGLSVATSRAKPLAAWMNGLEVCSIEADSSKGCLILSVGIATRYVYATYKKTPVTTDEAEAWESAKKTSGGLHFLAIQDDLDSDDCVGFWLLIDLPPPPV", "sequence_length": 374, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "398364499f7a5a5a30d8768b285bf8ef2864c0675dfc0f1866f9c46928bded5f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SFB3.json", "taxon_id": "3702", "uniprot_accession": "Q9SFB3", "uniprot_release": "2026_03" } ], "pfam_id": "PF06485", "short_name": "Tab2-like_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/yxea-family-protein-tigr01655.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01655", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/yxea-family-protein-tigr01655.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1093-pf06486.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1093-pf06486.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/yxea-like-superfamily-ipr036166.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036166", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yxea-like-superfamily-ipr036166.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf1093-2-40-50-480.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.40.50.480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf1093-2-40-50-480.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P54940", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06486" ], "protein_name": "Uncharacterized protein YxeA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ea662c2ad8d623c7710baa0e97041070bcbd1ac36d2956cf7157c53effe70e2c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKKAMAILAVLAAAAVICGLLFFHNDVTDRFNPFIHQQDVYVQIDRDGRHLSPGGTEYTLDGYNASGKKEEVTFFAGKELRKNAYLKVKAKGKYVETWEEVKFEDMPDSVQSKLK", "sequence_length": 115, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ea662c2ad8d623c7710baa0e97041070bcbd1ac36d2956cf7157c53effe70e2c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54940.json", "taxon_id": "224308", "uniprot_accession": "P54940", "uniprot_release": "2026_03" } ], "pfam_id": "PF06486", "short_name": "DUF1093", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/brxa-brxb-family-bacilliredoxin-tigr04191.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR04191", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/brxa-brxb-family-bacilliredoxin-tigr04191.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/disulph-isomer-pf06491.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06491", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/disulph-isomer-pf06491.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/6-10-250-2150-6-10-250-2150.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.10.250.2150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-10-250-2150-6-10-250-2150.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P54170", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06491" ], "protein_name": "Bacilliredoxin BrxA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "957dd3284ece5a8e8e383b94de371e5969871152cabe663baad3f91e647426ff", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSMAYEEYMRQLVVPMRRELTGAGFEELTTAEEVENFMEKAEGTTLVVVNSVCGCAAGLARPAATQAVLQNDKTPDNTVTVFAGQDKEATAKMREYFTGQEPSSPSMALLKGKEVVHFIPRHEIEGHDMEEIMKNLTAAFDAHC", "sequence_length": 144, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "957dd3284ece5a8e8e383b94de371e5969871152cabe663baad3f91e647426ff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54170.json", "taxon_id": "224308", "uniprot_accession": "P54170", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/brxa-brxb-family-bacilliredoxin-tigr04191.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR04191", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/brxa-brxb-family-bacilliredoxin-tigr04191.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/disulph-isomer-pf06491.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06491", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/disulph-isomer-pf06491.yaml" } ], "pfam_ids": [ "PF06491" ], "protein_name": "Bacilliredoxin BrxB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNMDFNLFMNDIVRQARQEITAAGYTELKTAEEVDEALTKKGTTLVMVNSVCGCAGGIARPAAYHSVHYDKRPDQLVTVFAGQDKEATARARDYFEGYPPSSPSFAILKDGKIMKMVERHEIEGHEPMAVVAKLQEAFEEYCEEV", "sequence_length": 145, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ecd12bb499390440e0b4587b9cc1ed7da0b4b06cfc54377d648f74b643497da2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54534.json", "taxon_id": "224308", "uniprot_accession": "P54534", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salinibacter ruber (strain DSM 13855 / M31)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/disulph-isomer-pf06491.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06491", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/disulph-isomer-pf06491.yaml" } ], "pfam_ids": [ "PF06491" ], "protein_name": "Bacilliredoxin SRU_0242", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPYPKSMVEPMRKELTRLGIDELKSPDDVDAAFGAAEDETLLLIINSVCGCAAGGARPAVAQALETGPTPDHAVTVFAGQDVAATDYVRDTHLPGIPPSSPFMALFRNGQPVYVIERKHIEGREPAAISADLVEALQAYCTDEAPPSDAPSRPDLSSSPNAGGLPSTFQSIS", "sequence_length": 172, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "568e418f052aa555139da7389c45dc92b146e8cae3568a9ec683da5f617fd160", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q2S5Z3.json", "taxon_id": "309807", "uniprot_accession": "Q2S5Z3", "uniprot_release": "2026_03" } ], "pfam_id": "PF06491", "short_name": "Disulph_isomer", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06493", "short_name": "DUF1096", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1097-pf06496.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06496", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1097-pf06496.yaml" } ], "pfam_ids": [ "PF06496" ], "protein_name": "Inner membrane protein YcdZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNILLSIAITTGILSGIWGWGAVSLGLLSWAGFLGCTAYFACPQGGFKGLLISACTLLSGMVWALVIIHGSALAPHLEIVSYVLTGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWRLVLPSLALGLIFGYAMKNSGLWLASRREQHSANTAVTK", "sequence_length": 160, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5895d8b8973821dfb43e8d9050bf4513a82be732a5b667eeab0f6bdf4f086764", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O54290.json", "taxon_id": "99287", "uniprot_accession": "O54290", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1097-pf06496.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06496", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1097-pf06496.yaml" } ], "pfam_ids": [ "PF06496" ], "protein_name": "Inner membrane protein YcdZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEILGYVITGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWKLVLPSLALGLIFGYAMKNSGLWLAARSAKTAHREQEIKNKA", "sequence_length": 163, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b0543be14583ab6e8dfacf3d2644b27e339aca82eb744e8124de006edba751fd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P75916.json", "taxon_id": "83333", "uniprot_accession": "P75916", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1097-pf06496.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06496", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1097-pf06496.yaml" } ], "pfam_ids": [ "PF06496" ], "protein_name": "Uncharacterized protein YahC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNGLTATGVTVGICAGLWQLVSSHVGLSQGWELLGTIGFVAFCSFYAAGGGKSGFIRSLAVNYSGMVWAFFAALTAGWLASVSGLSAFWASVITTVPFSAVVVWQGRFWLLSFIPGGFLGMTLFFASGMNWTVTLLGFLAGNCVGVISEYGGQKLSEATTKRDGY", "sequence_length": 165, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ba0d3fdd0643ac9b80082d8ef3bd382e6c893e64ee8fe46c533199d76c1db6a1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P77219.json", "taxon_id": "83333", "uniprot_accession": "P77219", "uniprot_release": "2026_03" } ], "pfam_id": "PF06496", "short_name": "DUF1097", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/baculo-ac102-pf06497.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06497", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/baculo-ac102-pf06497.yaml" } ], "pfam_ids": [ "PF06497" ], "protein_name": "Uncharacterized 12.2 kDa protein in P6.5-VP48 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIASIGDSAEPPLRRTRRAQQQDRPPTQLAAAEMLHNMNGAETAASFIVKDASENKIASLTTLGNQSIAARKLVESLQAGAPTIKLNREDTVNVLKFLNDVYTNQLEVVNIS", "sequence_length": 112, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "16301deb4b82b25c8aeeb4260c326741a63e03bef9b215e49203fca5835933a5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P24652.json", "taxon_id": "262177", "uniprot_accession": "P24652", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/baculo-ac102-pf06497.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06497", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/baculo-ac102-pf06497.yaml" } ], "pfam_ids": [ "PF06497" ], "protein_name": "Protein Ac102", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIASINDTDMDTDDNMSQARRNRRNRPPARPSAQTQMAAVDMLQTINTAASQTAASLLINDITPNKTESLKILSTQSVGARSLLEPMQANASTIKLNRIETVNVLDFLGSVYDNTIQVIVTE", "sequence_length": 122, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "34907f59a0824d4c46edf0b72ea8bf7820e649047be8a108cab810fd07a16273", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41482.json", "taxon_id": "46015", "uniprot_accession": "P41482", "uniprot_release": "2026_03" } ], "pfam_id": "PF06497", "short_name": "Baculo_Ac102", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-carbohydrate-catabolic-process-go0043470.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0043470", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-carbohydrate-catabolic-process-go0043470.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/esterase-frsa-nf003460.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF003460", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/esterase-frsa-nf003460.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/frsa-like-pf06500.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06500", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/frsa-like-pf06500.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P04335", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06500" ], "protein_name": "Esterase FrsA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d4dc9af546cc3cb496da5d686766c1cd4150b0ea81f4f1a64cd522f94a2a50c4", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTIPHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWATQAMVWQQKACAEDDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEAAQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYFAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGANVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFNPVYRNFDKGLQEITDWIEKRLC", "sequence_length": 414, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d4dc9af546cc3cb496da5d686766c1cd4150b0ea81f4f1a64cd522f94a2a50c4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P04335.json", "taxon_id": "83333", "uniprot_accession": "P04335", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/frsa-like-pf06500.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06500", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/frsa-like-pf06500.yaml" } ], "pfam_ids": [ "PF06500" ], "protein_name": "Heptaketide hydrolyase ayg1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPRWILGDKFDTVFPHKGSLKVLWESRWKSACSKSVYPFHDGSIEDFEPIFNHLISKNINDAASDEYTQAFLPTASALEEKAAQALQAGKHEEASNLLCRAAVVYRISRFPYVDITKPSSIKRVAFERQKQAYLKATSLWTQPIREVTVPHTYRTGNDGAHIPIYIRTPAGADQSNPVPIVLIMTGLDGYRSDNSQRTHEILARGWAAVVAEIPGTADCPADPADPASPDRLWDSVLSYLDQRPELNTAKMVVWGLSAGGYYAIRAAHTHRDRLLGAIAHGPGCHYYLDPEWLAKVNDHEYPFEITAAWATKHGYKTVEEFVAGAQKKFSLVETGIVDQPSCRLLLLNGVDDGVVPIEDCLVLFEHGSPKEGRFYKGLPHMGYPNSLPVSYEWLEQVLASPSKTKN", "sequence_length": 406, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1a4eb7e582bfd8a68e848c3b51f54f764f694e131ee8b5c0d10d8fa8e4f4f457", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4WZB3.json", "taxon_id": "330879", "uniprot_accession": "Q4WZB3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Paenarthrobacter nicotinovorans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/frsa-like-pf06500.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06500", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/frsa-like-pf06500.yaml" } ], "pfam_ids": [ "PF06500" ], "protein_name": "2,6-dihydropseudooxynicotine hydrolase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVTSQVKPEDEMLNWGRLILDGVSYSDMVGARDRPKEITWFDYWMSLANEYEQEAERKVALGHDLSAGELLMSAALCAQYAQFLWFDERRQKGQARKVELYQKAAPLLSPPAERHELVVDGIPMPVYVRIPEGPGPHPAVIMLGGLESTKEESFQMENLVLDRGMATATFDGPGQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDEVPLSFVDTVLELVPAEHLNLVVEKDGDHCCHNLGIRPRLEMADWLYDVLVAGKKVAPTMKGWPLNG", "sequence_length": 367, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a3726f2264e0a116d65fe2664e53dce48d4b941b9ecd403a94a4a4004231e106", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q93NG6.json", "taxon_id": "29320", "uniprot_accession": "Q93NG6", "uniprot_release": "2026_03" } ], "pfam_id": "PF06500", "short_name": "FrsA-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Maize rough dwarf virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1101-pf06503.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06503", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1101-pf06503.yaml" } ], "pfam_ids": [ "PF06503" ], "protein_name": "Probable non-structural 41.0 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDRPAREHLKFSKANTKNEIREMRIYKDDTADGLCFSEINVGCTSTTPKMSLSDYFSSVSCSFDGEMRIPDIPLKMYGDLHFHEQFTNDVDLDLLCWQLLSSNQDSRALCVNILRMVTSLSLGNAFISEGRYHYAIDTTEQTSAEDSDALRFLARIAKIVIKNDVDKSDVVAAQQTLIYYYFGNSYQGIHLNWDSKSSQQSIHGYSTSEVCLDHYIRMKVDLFHGLRSKNLVYGGNYQLVYQALFYYYVITNGRFSSGFNVRKDSIKSYFVPNDDPSMCNVSPRKPSLSLMFIRAVLITILIKDYSPVKEIPKYLRQLEVENPLTNSCLITDNGLRSEVPMNAAAPSAPTPTELPVFSPPSS", "sequence_length": 362, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "025e4866906b16d30bc5d88639a677c8f5e9e8ee29179fb8137fbb87f5ca45e5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P22119.json", "taxon_id": "10989", "uniprot_accession": "P22119", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Fiji disease virus (isolate Sugarcane)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1101-pf06503.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06503", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1101-pf06503.yaml" } ], "pfam_ids": [ "PF06503" ], "protein_name": "Uncharacterized protein VP7-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERSSREHSKYSKANTLNETYQMRMYKDDSTPDYCYSEISVGLSSSSPKMSLSDYFSAVSVTYGDEARLDEYKPLLYSDLLFAESYELDVDINLLVWQLLSSNQDSKSLCVNVLRMLHTYSLGNAYMGGGIYHFSQGTNTETLSDIVDILRLIGRLAKIIIKTKFSQMELKCVQTHLIYYFTGKAYKSLSLSWDSKSILSTSNGYSTSEGLLDYYIRNKLDLFKALYSKNLVYGGNYYLIYQVLVYYYIITNGRYSTGFNLRKDSIKHYNIPNDNPKMCNSILPRKPNLSMMYIRAILIMVMIKDYSPIKLVPLYLNALEIEDPAYMSSRITDGGIRMETDNMASTPDISRVLPAYFNGVKNDQ", "sequence_length": 364, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "94b165f7c08d3a22ffa459a9b87bf47dcd1f893828d821ce725bc003791692ed", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4VPH8.json", "taxon_id": "648172", "uniprot_accession": "Q4VPH8", "uniprot_release": "2026_03" } ], "pfam_id": "PF06503", "short_name": "DUF1101", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06510", "short_name": "DUF1102", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06513", "short_name": "DUF1103", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06518", "short_name": "DUF1104", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06523", "short_name": "DUF1106", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/stringent-response-go0015968.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015968", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/stringent-response-go0015968.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1107-pf06526.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06526", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1107-pf06526.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/so0334-like-domain-3-30-1910-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.1910.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/so0334-like-domain-3-30-1910-10.yaml" } ], "pfam_ids": [ "PF06526" ], "protein_name": "Uncharacterized protein YtfK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKVKDKLHLSVMSEVNRQVMRLQTEMA", "sequence_length": 68, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0fa88f7a7a9aad2ac09ae1d2287f136d6becafd728c2b60f30b1c9c4977730c9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADE2.json", "taxon_id": "83333", "uniprot_accession": "P0ADE2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1107-pf06526.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06526", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1107-pf06526.yaml" } ], "pfam_ids": [ "PF06526" ], "protein_name": "Uncharacterized protein YtfK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKVKDKLHLSVMSEVNRQVMRLQTEMA", "sequence_length": 68, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0fa88f7a7a9aad2ac09ae1d2287f136d6becafd728c2b60f30b1c9c4977730c9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADE3.json", "taxon_id": "199310", "uniprot_accession": "P0ADE3", "uniprot_release": "2026_03" } ], "pfam_id": "PF06526", "short_name": "DUF1107", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06531", "short_name": "DUF1108", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06532", "short_name": "NrsF", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06533", "short_name": "DUF1110", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06537", "short_name": "DHOR", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/abc-trans-cmpb-pf06541.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06541", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/abc-trans-cmpb-pf06541.yaml" } ], "pfam_ids": [ "PF06541" ], "protein_name": "Transmembrane protein 229b", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATTVTPEPLTALSRWYLYAIHGYFCEVMFTAAWEFVVNCNWKFPGVTSVWALFIYGTCILIVERMYLCLKDRCNVLLRCIIYTLWTYFWEFGTGFLLRQFNACPWDYSEFKYNFMGLITAEYAVPWFCASFIVERLVIRNTLRLRFDEVAESGQAEERLDRGGGGRGGRRGRGARAGATSANGYVKVD", "sequence_length": 189, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d3a0d5d277f63325fed182b650f1c38fb9b4a10b0df5595f63d80013e11e7a29", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q08CG9.json", "taxon_id": "7955", "uniprot_accession": "Q08CG9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/abc-trans-cmpb-pf06541.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06541", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/abc-trans-cmpb-pf06541.yaml" } ], "pfam_ids": [ "PF06541" ], "protein_name": "Transmembrane protein 229B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASAEPLTALSRWYLYAIHGYFCEVMFTAAWEFVVNFNWKFPGVTSVWALFIYGTSILIVERMYLRLRGRCPLLVRCVIYTLWTYLWEFTTGFILRQFNACPWDYSQFDFDFMGLITLEYAVPWFCGALIMEQFIIRNTLRLRFDKDAEPGEPASPPALANGHVKTD", "sequence_length": 167, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "969cd57ee0882504935a31126d3178b858a799614de31518c2b6f1efad3579c9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BFQ2.json", "taxon_id": "10090", "uniprot_accession": "Q8BFQ2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/abc-trans-cmpb-pf06541.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06541", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/abc-trans-cmpb-pf06541.yaml" } ], "pfam_ids": [ "PF06541" ], "protein_name": "Transmembrane protein 229B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASAEPLTALSRWYLYAIHGYFCEVMFTAAWEFVVNLNWKFPGVTSVWALFIYGTSILIVERMYLRLRGRCPLLLRCLIYTLWTYLWEFTTGFILRQFNACPWDYSQFDFDFMGLITLEYAVPWFCGALIMEQFIIRNTLRLRFDKDAEPGEPSGALALANGHVKTD", "sequence_length": 167, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e8ac3a5c1599fa365629febf2066b1e0e0639eb982f2f070526f4873131441aa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NBD8.json", "taxon_id": "9606", "uniprot_accession": "Q8NBD8", "uniprot_release": "2026_03" } ], "pfam_id": "PF06541", "short_name": "ABC_trans_CmpB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06542", "short_name": "PHA-1", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "5453b6c0c2db1071a88225a043267f00a25b599bdc66a91b9b0934041c069d6d", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"https://rest.uniprot.org/uniprotkb/Q9D131.json", "taxon_id": "10090", "uniprot_accession": "Q9D131", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap68-pf06608.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06608", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap68-pf06608.yaml" } ], "pfam_ids": [ "PF06608" ], "protein_name": "Cilia- and flagella-associated protein 68", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"data/traits/sequence/family/pfam/alae-pf06610.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06610", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/alae-pf06610.yaml" } ], "pfam_ids": [ "PF06610" ], "protein_name": "L-alanine exporter AlaE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQELNSMFSPHSRLRHAVADTFAMVVYCSVVGMMIEIFVSGMSFEQSLSSRLVAIPVNMVIAWPYGLYRDAVMRLAARVGKGRLVRNLADVIAYITFQSPVYAAILLFVGADIPQIITAVSSNIVVSMMMGAAYGYFLDYCRRLFRVSPAAPVSAQA", "sequence_length": 158, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d1d4721ba724156105f78afa484ddcf8ba90e6b5d8489e304a0237c3cf7fd6c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A7MI12.json", "taxon_id": "290339", "uniprot_accession": "A7MI12", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/l-amino-acid-efflux-transmembrane-transporter-activity-go0034639.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034639", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/l-amino-acid-efflux-transmembrane-transporter-activity-go0034639.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/alae-pf06610.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06610", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/alae-pf06610.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P64550", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06610" ], "protein_name": "L-alanine exporter AlaE", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "405dca6d56898bff921bf448f74c0d9f90dad2c3ec8bd748ea782a68d2b2f7bd", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MFSPQSRLRHAVADTFAMVVYCSVVNMCIEVFLSGMSFEQSFYSRLVAIPVNILIAWPYGMYRDLFMRAARKVSPSGWIKNLADILAYVTFQSPVYVAILLVVGADWHQIMAAVSSNIVVSMLMGAVYGYFLDYCRRLFKVSRYQQVKA", "sequence_length": 149, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "405dca6d56898bff921bf448f74c0d9f90dad2c3ec8bd748ea782a68d2b2f7bd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64550.json", "taxon_id": "83333", "uniprot_accession": "P64550", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aliivibrio fischeri (strain 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"fbc728e3c2b0c112b6ca10d0a4094b70402b28e3ae1a30afd6b5039ae1629dfd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5E684.json", "taxon_id": "312309", "uniprot_accession": "Q5E684", "uniprot_release": "2026_03" } ], "pfam_id": "PF06610", "short_name": "AlaE", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/duf1145-family-protein-nf008158.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008158", "section": "canonical_examples", "url": 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"b7387e0070d1d8979b4087a881239aceb54daa32aff49d3b109ec945a8af9f53", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76172.json", "taxon_id": "83333", "uniprot_accession": "P76172", "uniprot_release": "2026_03" } ], "pfam_id": "PF06649", "short_name": "DUF1161", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06651", "short_name": "DUF1163", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06653", "short_name": "Claudin_3", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cep57-cld-2-pf14197.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14197", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cep57-cld-2-pf14197.yaml" } ], "pfam_ids": [ "PF06657", "PF14197" ], "protein_name": "Spindle pole body protein ppc89", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPSQFNDNFVATDDDVGTMARVGMALDRELNGDSFQDNLNFQPRSGKREDFEPFFQDTPNTKSLSKHFHDFTMNASLETLPSVEKPRGRNMNAFEETSWNRFRKNGSLFPLSSPPISEPDLRPQALNETPDYRNRFLGAFKKQGVLDDHGNLKLDASPSFLKKPAEYTPLANRQNQNLAFDSPTEALPPKPTTPWRRNGFRSKTTPNLNSGKETPSSYKASARLMEQLGLNHSEPSVDFNNQTSYRLPNLTNLSSLIRDDTIDENGNAKEHDRLPELNTIPVASTDEQLFNAHQLLEKKFEILKRERNECNAKIDELQDKLELLTDAYNREKRRARSLEERMSKEMLTKLGESNVDDGMAASRYDTVKREKERLSEHLKSLQEQYEHIQSVYKNVLLDRESYIMRLGNKISENNELLNENRVLKEKLQTYLDKKESNVTSKIKSTAENSSKPLSMNEADERKDGLNNLLFENKSGANTKEMSNGTETAKENCSPQQDSTSPTSGYQDLVKELAKEIEMRKSLELKLKLSQSNKAGPVKHRKRRPKSKRRITGKVVFDSPNVASGVESDEGSEEISLDSEYSDILSDDGDFEKEKQATLPRRRSSSSMKGNKLAEDSYLNEAGFDWNQGTFHNGSEFGTTGVPDEPNEEELPKHVLKQVEHIINESAAHGVGKCNACHARQEDLIRGEQKVSHSNCLYADQTLRPSQPPSEALKTVVNQLTNELMELKKRYEKLSDRYNSLTPGYHKHKRQEIKNKLIKLIECMESKSDQIYLLYDVNVGKDFS", "sequence_length": 783, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "081f7239a1c6a6b230d281e0a4e1c9ee55ef8bc43973337e7d3598fb7dc9ee6e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q10218.json", "taxon_id": "284812", "uniprot_accession": "Q10218", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cep57-centrosome-localisation-domain-ipr025913.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025913", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cep57-centrosome-localisation-domain-ipr025913.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cep57-centrosome-microtubule-binding-domain-ipr024957.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024957", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cep57-centrosome-microtubule-binding-domain-ipr024957.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cep57-cld-pf14073.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14073", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cep57-cld-pf14073.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cep57-mt-bd-pf06657.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06657", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cep57-mt-bd-pf06657.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-58-90-1-20-58-90.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.90", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-58-90-1-20-58-90.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q86XR8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06657", "PF14073" ], "protein_name": "Centrosomal protein of 57 kDa", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4a466483464183af8627359347c6292cc23999670f77567d6f8ca4f73989ea79", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAAASVSAASGSHLSNSFAEPSRSNGSMVRHSSSPYVVYPSDKPFLNSDLRRSPSKPTLAYPESNSRAIFSALKNLQDKIRRLELERIQAEESVKTLSRETIEYKKVLDEQIQERENSKNEESKHNQELTSQLLAAENKCNLLEKQLEYMRNMIKHAEMERTSVLEKQVSLERERQHDQTHVQSQLEKLDLLEQEYNKLTTMQALAEKKMQELEAKLHEEEQERKRMQAKAAELQTGLETNRLIFEDKATPCVPNARRIKKKKSKPPEKKSSRNYFGAQPHYRLCLGDMPFVAGKSTSPSHAVVANVQLVLHLMKQHSKALCNDRVINSIPLAKQVSSRGGKSKKLSVTPPSSNGINEELSEVLQTLQDEFGQMSFDHQQLAKLIQESPTVELKDKLECELEALVGRMEAKANQITKVRKYQAQLEKQKLEKQKKELKATKKTLDEERNSSSRSGITGTTNKKDFMKLRPGEKRRKNLQLLKDMQSIQNSLQSSSLCWDY", "sequence_length": 500, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4a466483464183af8627359347c6292cc23999670f77567d6f8ca4f73989ea79", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q86XR8.json", "taxon_id": "9606", "uniprot_accession": "Q86XR8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cep57-centrosome-localisation-domain-ipr025913.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025913", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cep57-centrosome-localisation-domain-ipr025913.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cep57-centrosome-microtubule-binding-domain-ipr024957.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024957", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cep57-centrosome-microtubule-binding-domain-ipr024957.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cep57-cld-pf14073.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14073", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cep57-cld-pf14073.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cep57-mt-bd-pf06657.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06657", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cep57-mt-bd-pf06657.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-58-90-1-20-58-90.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.90", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-58-90-1-20-58-90.yaml" } ], "pfam_ids": [ "PF06657", "PF14073" ], "protein_name": "Centrosomal protein of 57 kDa", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAASVSAASDSQFSSVLAEPSRSNGNMVRHSSSPYVLYPPDKPFLNSDLRRSPNKPTFAYPESNSRAIFSALKNLQDKIRRLELERIQAEESVKTLSRETIEYKKVLDEQIQERENSKNEESKHNQELASQLVAAENKCNLLEKQLEYMRNMIKHAEMERTSVLEKQVSLERERQHDQTHVQSQLEKLDLLEQEYNKLTAMQALAEKKMQELESKLREEEQERKRMQARAAELQSGLEANRLIFEDKTTSCVSTSTRKIKKKKSKPPEKKGSRTYFGAQPHYRLCLGDMPFVAGTSTSPSHAVVANVQHVLHLMKHHSKALCNDRVVNSVPLAKQACSRVSKSKKSVVPPSSSVNEELSDVLQTLQDEFGQMSFDHQQLTKLIQESPTVELKDNLECELEALVGRMEAKANQITKVRKYQAQLEKQNIDKQKKELKANKKTLDEEGNSSGRSSGVPRTASKKDLAKQRPGEKSRKNLQLLKDMQTIQNSLQSSNLCWDY", "sequence_length": 500, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eb9ffd2009d1b6584bbd1b501a334d78ca3c29341855ac7ed476ab0cd3449d73", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CEE0.json", "taxon_id": "10090", "uniprot_accession": "Q8CEE0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cep57-centrosome-localisation-domain-ipr025913.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025913", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cep57-centrosome-localisation-domain-ipr025913.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cep57-centrosome-microtubule-binding-domain-ipr024957.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024957", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cep57-centrosome-microtubule-binding-domain-ipr024957.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cep57-cld-pf14073.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14073", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cep57-cld-pf14073.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cep57-mt-bd-pf06657.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06657", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cep57-mt-bd-pf06657.yaml" } ], "pfam_ids": [ "PF06657", "PF14073" ], "protein_name": "Centrosomal protein CEP57L1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSELMHSIVGSYHKPPERVFVPSFTQNEPSQNCHPANLEVTSPKILHSPNSQALILALKTLQEKIHRLELERTQAEDNLNILSREAAQYKKALENETNERNLAHQELIKQKKDISIQLSSAQSRCTLLEKQLEYTKRMVLNVEREKNMILEQQAQLQREKEQDQMKLYAKLEKLDVLEKECFRLTTTQKTAEDKIKHLEEKLKEEEHQRKLFQDKASELQTGLEISKIIMSSVSNLKHSKEKKKSSKKTKCIKRRPPWQICSKFGALPFVAEKMRQHRDPHILQKPFNVTETRCLPKPSRTTSWCKAIPPDSEKSISICDNLSELLMAMQDELDQMSMEHQELLKQMKETESHSVCDDIECELECLLKKMEIKGEQISKLKKHQDSVCKLQQKVQNSKMSEASGIQQEDSYPKGSKNIKNSPRKCLTDTNLFQKNSSFHPIRVHNLQMKLRRDDIMWEQ", "sequence_length": 460, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b1e756fff2edb1c433a35587ab314a360333d7f5ed1ad29db115f77b37634a7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IYX8.json", "taxon_id": "9606", "uniprot_accession": "Q8IYX8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cep57-centrosome-localisation-domain-ipr025913.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025913", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cep57-centrosome-localisation-domain-ipr025913.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cep57-centrosome-microtubule-binding-domain-ipr024957.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024957", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cep57-centrosome-microtubule-binding-domain-ipr024957.yaml" } ], "pfam_ids": [ "PF06657", "PF14073" ], "protein_name": "Centrosomal protein CEP57L1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSELSQSMVGSYLNPPERMHLPSFTQNEAFQNCHPGTPPKMFNSPNNQALVSALKTLQEKIRRLELERTQAEDNLNLLSREAAQYKKALEEETNERNLAHQELIKQKKDISIQLSSAQSRCILLEKQLEYTKRMVLNVEREKTMILEQQAQLQREKEQDQMKLHAKLEKLHVLEKECLRLTATRQTAEDKIKCLEEKLKEEEHQRRLFQDRACEKTNCLKREPPQQRDHKFRTPTFERKKPFRTTSQARANPQSSGEPVSICDSLSELLMTMEEELDQMNMEHRELLRQTMQPGNHSVSEDIEQELEQLAKKMESKGDQISKLKKHQDSVRKLQEKIENSRINESSGIHGNPKGSKNLKTSPRKCVSETSSFQRDRGFQPVQVHSLQSKLRRDDIKWEQ", "sequence_length": 400, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "285074926c4f25dd3ab65a284105ad6f1712122a0d9d85115e9de8e0b2c4c418", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VDS7.json", "taxon_id": "10090", "uniprot_accession": "Q8VDS7", "uniprot_release": "2026_03" } ], "pfam_id": "PF06657", "short_name": "Cep57_MT_bd", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1168-pf06658.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06658", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1168-pf06658.yaml" } ], "pfam_ids": [ "PF06658" ], "protein_name": "PRKR-interacting protein 1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVENKDARPGKALKKESQPLIIAKTPAEEQRLKLERLMRNPDKAAPIPEKPKEWNPRAPPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDFLERLSEKQKLDEEYKEKLIENQKAAEDRTAKRRKKREKLKQKKLMAKKAKMESQKEEDSEKSSSSSASEGEEKDDDAEVPSFIMGKR", "sequence_length": 182, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "10ab45b4e4e6011c0def8ea46c12893d547c0624a72e9a3f465f6d65b130472b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q568A0.json", "taxon_id": "7955", "uniprot_accession": "Q568A0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1168-pf06658.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06658", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1168-pf06658.yaml" } ], "pfam_ids": [ "PF06658" ], "protein_name": "PRKR-interacting protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASPAAASVRPPRPKKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMNEWAPRAPPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIAAEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQKEEPSQCQEQHASSSDEASETEEEEEEPSVVIMGR", "sequence_length": 186, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3764c30c6b247cf9e38be887714b1a9dd34d359324412b90d2f91aaa7ce567db", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CWV6.json", "taxon_id": "10090", "uniprot_accession": "Q9CWV6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1168-pf06658.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06658", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1168-pf06658.yaml" } ], "pfam_ids": [ "PF06658" ], "protein_name": "PRKR-interacting protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASPAASSVRPPRPKKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIAAEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEGPGQPKEQGSSSSAEASGTEEEEEVPSFTMGR", "sequence_length": 184, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "09d5723c0249b272127842d29812ec46596c587de087b1a85a9772cef4e87c4f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H875.json", "taxon_id": "9606", "uniprot_accession": "Q9H875", "uniprot_release": "2026_03" } ], "pfam_id": "PF06658", "short_name": "DUF1168", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:G9CGD6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00169", "PF00536", "PF00595", "PF06663", "PF10534", "PF30894" ], "protein_name": "CNK3/IPCEF1 fusion protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4e1f7cce5c6d9f94e839f52051f4f018c8cb15924a8db4f0d5e4347ac2f1b944", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEPVTKWSPKQVVDWTRGLDDCLQQYVHKFEREKINGEQLLQISHQDLEELGVTRIGHQELVLEAVDLLCALNYGLETDNMKNLVLKLRASSHNLQNYISSRRKSPAYDGNTSRKAPNEFLTSVVELIGAAKALLAWLDRAPFTGITDFSVTKNKIIQLCLDLTTTVQKDCFVAEMEDKVLTVVKVLNGICDKTIRSTTDPVMSQCACLEEVHLPNIKPGEGLGMYIKSTYDGLHVITGTTENSPADRSQKIHAGDEVIQVNQQTVVGWQLKNLVKKLRENPTGVVLLLKKRPTGSFNFTPAPLKNLRWKPPLVQTSPPPATTQSPESTMDTSLKKEKSAILDLYIPPPPAVPYSPRDENGSFVYGGSSKCKQPLPGPKGSESPNSFLDQESRRRRFTIADSDQLPGYSVETNILPTKMREKTPSYGKPRPLSMPADGNWMGIVDPFARPRGHGRKAFVSTKMTSYMAIDGSALVPLRQKPRRKTQGFLTMSRRRISCKDLGHADCQGWLYKKKEKGSFLSNKWKKFWVILKGSSLYWYSNQMAEKADGFVNLPDFTVERASECKKKHAFKISHPQIKTFYFAAENVQEMNVWLNKLGSAVIHQESTTKDEECYSESEQEDPEIAAETPPPPHASQTQSLTAQQASSSSPSLSGTSYSFSSLENTVKTPSSFPSSLSKERQSLPDTVNSLSAAEDEGQPITFAVQVHSPVPSEAGIHKALENSFVTSESGFLNSLSSDDTSSLSSNHDHLTVPDKPAGSKIMDKEETKVSEDDEMEKLYKSLEQASLSPLGDRRPSTKKELRKSFVKRCKNPSINEKLHKIRTLNSTLKCKEHDLAMINQLLDDPKLTARKYREWKVMNTLLIQDIYQQQRASPAPDDTDDTPQELKKSPSSPSVENSI", "sequence_length": 899, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4e1f7cce5c6d9f94e839f52051f4f018c8cb15924a8db4f0d5e4347ac2f1b944", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G9CGD6.json", "taxon_id": "9606", "uniprot_accession": "G9CGD6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cnk2-3-dom-pf06663.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06663", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cnk2-3-dom-pf06663.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cric-ras-sig-pf10534.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10534", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cric-ras-sig-pf10534.yaml" } ], "pfam_ids": [ "PF00536", "PF00595", "PF06663", "PF10534" ], "protein_name": "Connector enhancer of kinase suppressor of ras 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPVTKWSPKQVVDWTRGLDDCLQQYVHKFEREKINGEQLLQISHQDLEELGVTRIGHQELVLEAVDLLCALNYGLETDNMKNLVLKLRASSHNLQNYISSRRKSPAYDGNTSRKAPNEFLTSVVELIGAAKALLAWLDRAPFTGITDFSVTKNKIIQLCLDLTTTVQKDCFVAEMEDKVLTVVKVLNGICDKTIRSTTDPVMSQCACLEEVHLPNIKPGEGLGMYIKSTYDGLHVITGTTENSPADRSQKIHAGDEVIQVNQQTVVGWQLKNLVKKLRENPTGVVLLLKKRPTGSFNFTPAPLKNLRWKPPLVQTSPPPATTQSPESTMDTSLKKEKSAILDLYIPPPPAVPYSPRDENGSFVYGGSSKCKQPLPGPKGSESPNSFLDQESRRRRFTIADSDQLPGYSVETNILPTKMREKTPSYGKPRPLSMPADGNWMGIVDPFARPRGHGRKGEDALCRYFSNERIPPIIEESSSPPYRFSRPTTERHLVRGADYIRGSRCYINSDLHSSATIPFQEEGTKKKSGSSATKSSSTEPSLLVSWFTRLKLLTH", "sequence_length": 555, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d04d6b1f82546cc50cd1a5d14fb307f5700a5a7df5c67b8278b31cad7859b835", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P9H4.json", "taxon_id": "9606", "uniprot_accession": "Q6P9H4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cnk2-3-dom-pf06663.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06663", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cnk2-3-dom-pf06663.yaml" } ], "pfam_ids": [ "PF00169", "PF00536", "PF00595", "PF06663", "PF10534", "PF30894" ], "protein_name": "Connector enhancer of kinase suppressor of ras 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALIMEPVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNYGLETENLKTLSHKLNASAKNLQNFITGRRRSGHYDGRTSRKLPNDFLTSVVDLIGAAKSLLAWLDRSPFAAVTDYSVTRNNVIQLCLELTTIVQQDCTVYETENKILHVCKTLSGVCDHIISLSSDPLVSQSAHLEVIQLANIKPSEGLGMYIKSTYDGLHVITGTTENSPADRCKKIHAGDEVIQVNHQTVVGWQLKNLVNALREDPSGVILTLKKRPQSMLTSAPALLKNMRWKPLALQPLIPRSPTSSVATPSSTISTPTKRDSSALQDLYIPPPPAEPYIPRDEKGNLPCEDLRGHMVGKPVHKGSESPNSFLDQEYRKRFNIVEEDTVLYCYEYEKGRSSSQGRRESTPTYGKLRPISMPVEYNWVGDYEDPNKMKRDSRRENSLLRYMSNEKIAQEEYMFQRNSKKDTGKKSKKKGDKSNSPAHYSLLPSLQMDALRQDIMGTPVPETTLYHTFQQSSLQHKSKKKNKGAISGKSKRRISCKDLGRGDCEGWLWKKKDAKSYFSQKWKKYWFVLKDASLYWYINEEDEKAEGFISLPEFKIDRASECRKKYAFKACHPKIKSFYFAAEHLDDMNRWLNRINMLTAGYAERERIKQEQDYWSESDKEEADTPSTPKQDSPPPPYDTYPRPPSMSCASPYVEAKHSRLSSTETSQSQSSHEEFRQEVTGSSAVSPIRKTASQRRSWQDLIETPLTSSGLHYLQTLPLEDSVFSDSAAISPEHRRQSTLPTQKCHLQDHYGPYPLAESERMQVLNGNGGKPRSFTLPRDSGFNHCCLNTPVSACDPQDDIQPPEVEEEEEEEEEEAAGENVGEKNENREEKLGDSLQDLYRALEEASLSPLGEHRISTKMEYKLSFIKRCNDPVMNEKLHRLRILKSTLKAREGEVAIIDKVLDNPDLTSKEFQQWKQMYLDLFLDICQSTTSNDPLSISSEVDVLTSSLTHTHSYIETHV", "sequence_length": 1032, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6ff4f54e7fbd7cb30ff210df0d5ee3b618bb61b4a5a3c6301c2d5df8469f855b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q80YA9.json", "taxon_id": "10090", "uniprot_accession": "Q80YA9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cnk2-3-dom-pf06663.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06663", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cnk2-3-dom-pf06663.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cric-ras-sig-pf10534.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10534", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cric-ras-sig-pf10534.yaml" } ], "pfam_ids": [ "PF00169", "PF00536", "PF00595", "PF06663", "PF10534", "PF30894" ], "protein_name": "Connector enhancer of kinase suppressor of ras 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALIMEPVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNYGLETENLKTLSHKLNASAKNLQNFITGRRRSGHYDGRTSRKLPNDFLTSVVDLIGAAKSLLAWLDRSPFAAVTDYSVTRNNVIQLCLELTTIVQQDCTVYETENKILHVCKTLSGVCDHIISLSSDPLVSQSAHLEVIQLANIKPSEGLGMYIKSTYDGLHVITGTTENSPADRCKKIHAGDEVIQVNHQTVVGWQLKNLVNALREDPSGVILTLKKRPQSMLTSAPALLKNMRWKPLALQPLIPRSPTSSVATPSSTISTPTKRDSSALQDLYIPPPPAEPYIPRDEKGNLPCEDLRGHMVGKPVHKGSESPNSFLDQEYRKRFNIVEEDTVLYCYEYEKGRSSSQGRRESTPTYGKLRPISMPVEYNWVGDYEDPNKMKRDSRRENSLLRYMSNEKIAQEEYMFQRNSKKDTGKKSKKKGDKSNSPTHYSLLPSLQMDALRQDIMGTPVPETTLYHTFQQSSLQHKSKKKNKGPIAGKSKRRISCKDLGRGDCEGWLWKKKDAKSYFSQKWKKYWFVLKDASLYWYINEEDEKAEGFISLPEFKIDRASECRKKYAFKACHPKIKSFYFAAEHLDDMNRWLNRINMLTAGYAERERIKQEQDYWSESDKEEADTPSTPKQDSPPPPYDTYPRPPSMSCASPYVEAKHSRLSSTETSQSQSSHEEFRQEVTGSSAVSPIRKTASQRRSWQDLIETPLTSSGLHYLQTLPLEDSVFSDSAAISPEHRRQSTLPTQKCHLQDHYGPYPLAESERMQVLNGNGGKPRSFTLPRDSGFNHCCLNAPVSACDPQDDVQPPEVEEEEEEEEEEGEAAGENIGEKSESREEKLGDSLQDLYRALEQASLSPLGEHRISTKMEYKLSFIKRCNDPVMNEKLHRLRILKSTLKAREGEVAIIDKVLDNPDLTSKEFQQWKQMYLDLFLDICQNTTSNDPLSISSEVDVITSSLAHTHSYIETHV", 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"registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGPRVLQPPLLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNSTHTRPPGASGSALTRSFYVILGFCGLTALYFLIRAFRLKKPQRRRYGLLANTEDPTEMASLDSDEETVFESRNLR", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "00ab81d91f94ccf86a0500f366dac12e0460038528e16906bf254a465a950911", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BVV8.json", "taxon_id": "9606", "uniprot_accession": "Q9BVV8", "uniprot_release": "2026_03" } ], "pfam_id": "PF06679", "short_name": "DUF1180", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06680", "short_name": "DUF1181", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1182-pf06681.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06681", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1182-pf06681.yaml" } ], "pfam_ids": [ "PF06681" ], "protein_name": "Uncharacterized protein ZK757.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIYNNISLNTITTTPLTYRDRITFEFSVHGTCVVFNLFLCIFFICRPHLLRTFKPTIFFVTLGTFVLSLPLFFLQFYLVVFLWSLVEPRYTIAVCTLVKCITSSTTSCAQVLPLAVAIYRYFIVVRNKKMPSWFVVVVHSIISFIFFVIAILNFPLGEFETNDQCAVLRFSKAMEAVRISLTLGLNLFAVFINVAIYTFVKKYDKRNVDVHRRRVQLTYSMLLQSMIPILVSIPLLVGSFDFYFGYTLPSGFTSRWYATTFLSPLLTPISSMLSLRTIRHELLSIILSSFLFTGTRKISNLVTKTSKTNVAPHSSDYSSA", "sequence_length": 320, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a08d3ed470ccb9a2d98169622d49474c17e0b94b13a3a0e4612d09185832a373", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P34679.json", "taxon_id": "6239", "uniprot_accession": "P34679", "uniprot_release": "2026_03" } ], "pfam_id": "PF06681", "short_name": "DUF1182", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/saraf-pf06682.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06682", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/saraf-pf06682.yaml" } ], "pfam_ids": [ "PF06682" ], "protein_name": "Store-operated calcium entry-associated regulatory factor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVAAVGRPRALRCPLLLLLSLLLVAGPALGWNDPDRILLRDVKALTLYSDRYTTSRRLDPIPQLKCVGGTAGCEAYTPRVIQCQNKGWDGYDVQWECKTDLDIAYKFGKTVVSCEGYESSEDQYVLRGSCGLEYNLDYTELGLKKLKESGKHQGFSDYYHKLYSSDSCGFITIAVLFVLAFAVYKLFLSDGQGSPPPYSEHPPYSEHSQRFASAAGAPPPGFKSEFTGPQNTGYGASSGFGSAFGGQGYGSSGPGFWSGLGAGGLLGYLFGSNRAATPFSDSWYHPAYPPSHSGAWNSRAYSPLGGGAGSYCASSNADSRTRTASGYGGTRRR", "sequence_length": 334, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "383cf4733adc2a9454aeefa7ae738b3d62d3100f501f20d57878cecbb1d5ea29", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R3Q0.json", "taxon_id": "10090", "uniprot_accession": "Q8R3Q0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/saraf-pf06682.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06682", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/saraf-pf06682.yaml" } ], "pfam_ids": [ "PF06682" ], "protein_name": "Store-operated calcium entry-associated regulatory factor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAACGPGAAGYCLLLGLHLFLLTAGPALGWNDPDRMLLRDVKALTLHYDRYTTSRRLDPIPQLKCVGGTAGCDSYTPKVIQCQNKGWDGYDVQWECKTDLDIAYKFGKTVVSCEGYESSEDQYVLRGSCGLEYNLDYTELGLQKLKESGKQHGFASFSDYYYKWSSADSCNMSGLITIVVLLGIAFVVYKLFLSDGQYSPPPYSEYPPFSHRYQRFTNSAGPPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGYLFGSNRAATPFSDSWYYPSYPPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKTRTASGYGGTRRR", "sequence_length": 339, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7253f691a776eaff9e5cf07689bf0930225cd8cb8b0e79ac0a5e2bc842472989", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96BY9.json", "taxon_id": "9606", "uniprot_accession": "Q96BY9", "uniprot_release": "2026_03" } ], "pfam_id": "PF06682", "short_name": "SARAF", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06683", "short_name": "DUF1184", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06684", "short_name": "AA_synth", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf1186-pf06685.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06685", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf1186-pf06685.yaml" } ], "pfam_ids": [ "PF06685" ], "protein_name": "Uncharacterized protein CT_203", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTMEISHILEDLVYDNGVLPREAIEAAIVKHHQITPYLLKILEEAIDHVSDIIDDDCYQGHLYAMYLLAQFRETRALPLIIKLFSFEQDIPHAIAGDVLTEDLSRILASVCDDVALIQELIETPHVNPYVQAAAISSLVALVGVHKLSRETAIRYFGELLNYRLEKKPSFAWDSLVASICALYPKELFYPISKAFSAGLIDTSFISMEDVETIIHEESIDSCLKEVLSSTDLINDTLEEMEKWLERFPFES", "sequence_length": 251, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1abdeb4d698bc69673f7f943f7e08e2836647e9685829508ed1f7905c6952f91", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O84206.json", "taxon_id": "272561", "uniprot_accession": "O84206", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia muridarum (strain MoPn / Nigg)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf1186-pf06685.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06685", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf1186-pf06685.yaml" } ], "pfam_ids": [ "PF06685" ], "protein_name": "Uncharacterized protein TC_0475", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEISHILEDLVYDNGVLPREAIEAAIVKHNQITPYLLKILEEAIDHVSDIIDDDCYQGHLYAMYLLAQFRETRALPLIIKLFSFEQDIPHAIAGDVLTEDLSRILASVCDDVSLIQELIETPRVNPYVQAAAISSLVSLVGVKKLSRGAAIRYFGELLNYRLEKRPSFAWDSLVASICALYPKELFYPISKAFSAGLIDKSFISMEDVETIIHEESIDSCLQEVFSSTDLIDDTLEEMEKWLERFPFES", "sequence_length": 249, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "52c8f22ba76ac6c82de0178bfd7a62dffc0cbc6a1be68809cf5a660b58a0e118", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9PKJ0.json", "taxon_id": "243161", "uniprot_accession": "Q9PKJ0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf1186-pf06685.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06685", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf1186-pf06685.yaml" } ], "pfam_ids": [ "PF06685" ], "protein_name": "Uncharacterized protein CPn_0206/CP_0561/CPj0206/CpB0210", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLMDISHILEDLAYDEGILPREAIEAAIVKQMQITPYLLHILHDATQRVPEIVNDGSYQGHLYAMYLLAQFRESRALPLIIKLFAFEDDTPHAIAGDVLTEDLPRILASVCNDDSLIKELIETPKINPYVKAAAISGLVTLVGAGKIPRDKVIRYFAELLNYRLEKQPSFAWDNLIAGICTLYPGELFYPISKAFDGGLVDTSFISMEDVENIIHEETVESCIHTLCSSTELINDTLEEMEKWLEDFPIEP", "sequence_length": 251, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "68a88faec8a99694951eaa8f54a0f4fd07dc6334e839afd70a806dc4418785e8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z8X8.json", "taxon_id": "83558", "uniprot_accession": "Q9Z8X8", "uniprot_release": "2026_03" } ], "pfam_id": "PF06685", "short_name": "DUF1186", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf007283.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007283", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf007283.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1187-pf06688.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06688", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1187-pf06688.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P33230", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06688" ], "protein_name": "Double-strand break reduction protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "306b361dbd4ae1ef5652d2e52959bd481c7b3123a99b18d8775c85b0181ce6d2", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MYKITATIEKEGGTPTNWTRYSKSKLTKSECEKMLSGKKEAGVSREQKVKLINFNCEKLQSSRIALYSN", "sequence_length": 69, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "306b361dbd4ae1ef5652d2e52959bd481c7b3123a99b18d8775c85b0181ce6d2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P33230.json", "taxon_id": "83333", "uniprot_accession": "P33230", "uniprot_release": "2026_03" } ], "pfam_id": "PF06688", "short_name": "DUF1187", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/6-carboxymethyl-5-methyl-4-hydroxypyridin-2-ol-3-c-methyltransferase-activity-go0160302.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/6-carboxymethyl-5-methyl-4-hydroxypyridin-2-ol-3-c-methyltransferase-activity-go0160302.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/iron-guanylylpyridinol-cofactor-biosynthetic-process-go0160300.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/iron-guanylylpyridinol-cofactor-biosynthetic-process-go0160300.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcgc-pf06690.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06690", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcgc-pf06690.yaml" } ], "pfam_ids": [ "PF06690" ], "protein_name": "6-carboxymethyl-5-methyl-4-hydroxypyridin-2-ol 3-C-methyltransferase HcgC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGCGIMKYGITEMVKTIDTKTRVVDVTNEIAKKKYQAIRDFLEGEEFKEVVIFGVYLWGNYTAQMLSKYADKVYLVDIHEFMKGFVPNNNSIKFLNLNEFKLKFIRGEVNPDLIVDLTGLGGIEPEFLAKFNPKVFIVEDPKGVFDVDIYEADNTYKRTAPFIEKAKVGVLKTYRKARVSKTSGTMTLTIDTIVDASREITSLDGVLYAIPNLRYYEGILFHENDIHKFLSEISQPAITISTLNDVLDEAEEILSNNINLIYSFVEEL", "sequence_length": 268, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8d15643dd1f15ee5f80c2a52fa5219437125d70800766704e2dfd5e267c95ea8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57913.json", "taxon_id": "243232", "uniprot_accession": "Q57913", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcgc-pf06690.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06690", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcgc-pf06690.yaml" } ], "pfam_ids": [ "PF06690" ], "protein_name": "6-carboxymethyl-5-methyl-4-hydroxypyridin-2-ol 3-C-methyltransferase HcgC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNYGITESVKTTRSKIKIKDIVSDVVEKKANAIKYFLEGEEFKQAIVFGAYLSGSYIAYSLLKDCEEVIIVDIQPHLKDILFNDGIKFMDLNKLQLELRNGTSINPDLVIDLTGIGGVSPDLISKFNPKVLIVEDPKGNHDKGISKIDNTDKRLCVGAKKGVLKTYRSSKFSKTSGTMTLVVDIIMDSCREINELDSVLYTIPNLKYFEGTVFHEKNVKKFLTELNMSAITVSSIDHVEYELEEILSKNISRVDSFVKEF", "sequence_length": 260, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e9e0f2bb240d6ffc19d2a3590904abc99bce91c46fecc8c1f954062875c138b6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6LX54.json", "taxon_id": "267377", "uniprot_accession": "Q6LX54", "uniprot_release": "2026_03" } ], "pfam_id": "PF06690", "short_name": "HcgC", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1189-pf06691.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06691", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1189-pf06691.yaml" } ], "pfam_ids": [ "PF06691" ], "protein_name": "Putative maltodextrin utilization protein YvdJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNLENKSFIIRCLKAAASPSGVCRYGNTFSWLQLSFLFLFLTACLMAPLAVSFVKMDRFSVSSFMPSAIQGVNDQFADQLQGFQIRNGKLTGGKSSERIEDGQNVMAVDMKHEYETSGENGRLKVTGFENAIIFQPDQLVITDQNETGFSVGYAKMDVKLEKPNVHDVEVLIDTLWLAQYKPMIMMLAYTVVSMIQLLLTFVLAGGLWITKISNMVSIASFKEAASIAICASALPAFAAAAIGMVHFDLITVLMIHSCGVTLMISFAFRYLTKTRRDNGNLHSGGNDDKSAVI", "sequence_length": 294, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8a34a10fa9e96ea6f87518693cbb16b715e084748bc41e5b0ba29fe2623b633b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O06992.json", "taxon_id": "224308", "uniprot_accession": "O06992", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1189-pf06691.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06691", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1189-pf06691.yaml" } ], "pfam_ids": [ "PF06691" ], "protein_name": "Uncharacterized protein YqgB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNVFQLFIKSTYSPRDIAKTRFQGIGKAILYVFLLSVLFAIPTAYYVSTGTVKSMNGFKTVLNKDFPDFTISNGKLQTDEKKATESQANGFVIVFDPTDSYGTEQIEAKQNAIGILQNKFVLAIDGQAQEMSYSMMPSELQKKDVIAGLNQNKAMIVTVLSALIFLVTAAGKFIEVSFLALIGLIIKNSQKKHLSYHQLWKLSAYSITLSTVFFTIMRALEATVPSEFLLNWFVNFVILFLVLKEIPSKKVINKS", "sequence_length": 255, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fed050af37c5296d31175862890259bd3dd1ffa65784e317db06f3ebe009fe29", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P54485.json", "taxon_id": "224308", "uniprot_accession": "P54485", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1189-pf06691.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06691", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1189-pf06691.yaml" } ], "pfam_ids": [ "PF06691" ], "protein_name": "Uncharacterized protein RP489", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYLLSFILGGLNTLLRQLRLSISSIDFYKDVYKNYQGYGIKYLFTLSFIPSIIYCIFILNYIITLKDYFNGTSSSKVTDNIEYIINQLPKIKYNNSKISVEEVEPIYLYSKNNNKIFVIDTKNQVSNQEKSKVPFVLEENKLKINLVSNTKKHFPSIVNYSEIFKQNEVILTPEIIKKYFADNLLYAPNLFIFFGTPVIILFWFVTFLLERSIIVLLVYGLANLLTTKTSIQTSIRLVMFSSGIPIILQPVIIILIPELSILIQLLQMFTTFLVFVAILQINKSLSHI", "sequence_length": 288, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8ded693ae0131ceceeabcc5094ca0feae6793fcafbd8afbd35497e2265f87240", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZD57.json", "taxon_id": "272947", "uniprot_accession": "Q9ZD57", "uniprot_release": "2026_03" } ], "pfam_id": "PF06691", "short_name": "DUF1189", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O1:K1 / APEC", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1190-pf06693.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06693", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1190-pf06693.yaml" } ], "pfam_ids": [ "PF06693" ], "protein_name": "UPF0441 protein YgiB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRTKSIRHASFRKNWSARHLTPVALAVATVFMLAGCEKSDETVSLYQNADDCSAANPGKSAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPAQAGMAPENQAQAQQSSGSFWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKYTDATGKNYGAAQPGRTMTVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSATGTSSRSMGG", "sequence_length": 223, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c697dd6942aab006d4a748b4ae923f13b4146fe7538e68418013c41856d64e2b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A1AFV9.json", "taxon_id": "405955", "uniprot_accession": "A1AFV9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/duf1190-family-protein-nf008655.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008655", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/duf1190-family-protein-nf008655.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1190-pf06693.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06693", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1190-pf06693.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0ADT2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06693" ], "protein_name": "UPF0441 protein YgiB", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c697dd6942aab006d4a748b4ae923f13b4146fe7538e68418013c41856d64e2b", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKRTKSIRHASFRKNWSARHLTPVALAVATVFMLAGCEKSDETVSLYQNADDCSAANPGKSAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPAQAGMAPENQAQAQQSSGSFWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKYTDATGKNYGAAQPGRTMTVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSATGTSSRSMGG", "sequence_length": 223, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c697dd6942aab006d4a748b4ae923f13b4146fe7538e68418013c41856d64e2b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADT2.json", "taxon_id": "83333", "uniprot_accession": "P0ADT2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1190-pf06693.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06693", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1190-pf06693.yaml" } ], "pfam_ids": [ "PF06693" ], "protein_name": "UPF0441 protein YgiB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRTKSIRHASFRKNWSARHLTPVALAVATVFMLAGCEKSDETVSLYQNADDCSAANPGKSAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPAQAGMAPENQAQAQQSSGSFWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKYTDATGKNYGAAQPGRTMTVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSATGTSSRSMGG", "sequence_length": 223, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c697dd6942aab006d4a748b4ae923f13b4146fe7538e68418013c41856d64e2b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADT4.json", "taxon_id": "623", "uniprot_accession": "P0ADT4", "uniprot_release": "2026_03" } ], "pfam_id": "PF06693", "short_name": "DUF1190", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06697", "short_name": "DUF1191", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06698", "short_name": "DUF1192", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-terminal-putative-kinase-domain-of-fam20-family-with-sequence-simila-cd10314.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd10314", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-terminal-putative-kinase-domain-of-fam20-family-with-sequence-simila-cd10314.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fam20-c-terminal-ipr009581.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009581", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fam20-c-terminal-ipr009581.yaml" } ], "pfam_ids": [ "PF06702" ], "protein_name": "Extracellular serine/threonine protein CG31145", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVLRTMKLKERLVISLGATLVLLTLLLIVDVQMDFGVANRHLLQQQHQKIRLGNDYDGGTGGGGMLHEFKRKFLQKSNASGSKEASTQAGASQSGGATSGQDAAAGASGGAAGPGTSRSTSTRKPTPHDRYADLQKHLLSDEYSHVIVDNAPDVSRDNPTLAEMLHRKASANASNLERFQLRITKKELYGEQDTLVDAVLRDMIKLPIQHVVQKEGGTQLKLIIEYPNDIKALMKPMRFPREQQTLPNHFYFTDYERHNAEIAAFHLDRILGFRRAMPVAGRTLNITTEIYQLAEENLLKTFFVSPSLNLCFHGKCSYYCDTSHAICGNPDMLEGSFAAFLPNFESGNRKLWRHPWRRSYHKRKKAQWETDANYCALVRDIPPYDDGRRLYDLMDMAVFDFLTGNMDRHHYETFKVYGNETFPLHLDHGRGFGRPFHDELSILAPVLQCCLIRKSTLVKLLDFHNGPKPLSQLMSESLSQDPVSPVLWQPHLEALDRRTGIILQSIRDCIKRNPPGDVDGSETDVSS", "sequence_length": 528, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "800fb7ad8eb9d308a18d4a38abd85081c1d2f5ed534221965fe5b001aa0f57ce", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A4VCL2.json", "taxon_id": "7227", "uniprot_accession": "A4VCL2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-proteoglycan-biosynthetic-process-go1902729.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1902729", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-proteoglycan-biosynthetic-process-go1902729.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-terminal-putative-kinase-domain-of-fam20b-xylose-kinase-experiments--cd10470.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd10470", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-terminal-putative-kinase-domain-of-fam20b-xylose-kinase-experiments--cd10470.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fam20-c-terminal-ipr009581.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009581", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fam20-c-terminal-ipr009581.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fam20c-pf06702.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fam20c-pf06702.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O75063", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06702" ], "protein_name": "Glycosaminoglycan xylosylkinase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": 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"sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "56b5f6f7a57e0ca5afa2a1020fa2db906b925964fddb899b44681f2b5dcd8ae1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O75063.json", "taxon_id": "9606", "uniprot_accession": "O75063", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/enamel-mineralization-go0070166.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070166", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/enamel-mineralization-go0070166.yaml" }, { "cited_uniprot_accession": "", "commit": 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"uniprot_accession": "Q8IXL6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-terminal-putative-kinase-domain-of-fam20b-xylose-kinase-experiments--cd10470.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd10470", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-terminal-putative-kinase-domain-of-fam20b-xylose-kinase-experiments--cd10470.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"2e0ae187cb0cf9eb62e1ab564618ae72c265559f1f486dfdb5da2ffd02e386b1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VCS3.json", "taxon_id": "10090", "uniprot_accession": "Q8VCS3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/tooth-eruption-go0044691.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044691", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/tooth-eruption-go0044691.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-terminal-putative-kinase-domain-of-fam20a-human-fam20a-may-play-a-fu-cd10469.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd10469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-terminal-putative-kinase-domain-of-fam20a-human-fam20a-may-play-a-fu-cd10469.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fam20-c-terminal-ipr009581.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009581", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fam20-c-terminal-ipr009581.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fam20c-pf06702.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fam20c-pf06702.yaml" } ], "pfam_ids": [ "PF06702" ], "protein_name": "Pseudokinase FAM20A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGLRRDRLLTLLLLGALLSADLYFHLWPQVQRQLRPRERPRGCPCTGRASSLARDSAAAASDPGTIVHNFSRTEPRTEPAGGSHSGSSSKLQALFAHPLYNVPEEPPLLGAEDSLLASQEALRYYRRKVARWNRRHKMYREQMNLTSLDPPLQLRLEASWVQFHLGINRHGLYSRSSPVVSKLLQDMRHFPTISADYSQDEKALLGACDCTQIVKPSGVHLKLVLRFSDFGKAMFKPMRQQRDEETPVDFFYFIDFQRHNAEIAAFHLDRILDFRRVPPTVGRIVNVTKEILEVTKNEILQSVFFVSPASNVCFFAKCPYMCKTEYAVCGNPHLLEGSLSAFLPSLNLAPRLSVPNPWIRSYTLAGKEEWEVNPLYCDTVKQIYPYNNSQRLLNVIDMAIFDFLIGNMDRHHYEMFTKFGDDGFLIHLDNARGFGRHSHDEISILSPLSQCCMIKKKTLLHLQLLAQADYRLSDVMRESLLEDQLSPVLTEPHLLALDRRLQTILRTVEGCIVAHGQQSVIVDGPVEQLAPDSGQANLTS", "sequence_length": 541, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "552b25ebbaf46fc92836cc690b8fc75d5dbad6cc443352e2735701e7214f5487", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q96MK3.json", "taxon_id": "9606", "uniprot_accession": "Q96MK3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-terminal-putative-kinase-domain-of-fam20-family-with-sequence-simila-cd10314.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd10314", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-terminal-putative-kinase-domain-of-fam20-family-with-sequence-simila-cd10314.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fam20-c-terminal-ipr009581.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009581", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fam20-c-terminal-ipr009581.yaml" } ], "pfam_ids": [ "PF06702" ], "protein_name": "Extracellular serine/threonine protein kinase CeFam20", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRCNIKRLFTLAIGVFAATLVIISFSKDNYEREWKQGPQSNEARAVGHQSPDLFPVGQNSLPHQPIPPSLGEKDLSDPFNFLFSSNKITLRKLYDLTKNVDFDQLRQNECKKNITLSKFWEKSEQRNVPEDDNWERFYSNIGSCSVYSDDQMIDNLLHDLNTSPIKHVHIMDGGTQVKFVFTFKNDKQAVFKPMRFGRDYESDPNHFYFSDFERHHAEIATFHLDRVLGFRRAIPTVGRVLNMTTELFEKAEKKLKKTFFFSPAKNFCFVSRCDYYCDTTHAICGLPDMKEGSVQVFLPDESAVPRKHNRSPYRRTYSKKNQVAEWQSSMNYCTDKVKTKRQYAHGRRLLDLVDIHILDYLIGNQDRHHFESFNVFNDLPSYAIHLDHGRAFGRSDFDDDDIILPLRQCCILRPSTFQTLMNFYSTPKSLTKALHESLSKDPAHPILAYKHYPAMERRLAKIMSHILECFESRGVAEVLVAEYNNPDVSDAEQNDEEQSEEHQDKKDDKKTV", "sequence_length": 512, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7eb9d2b49d5a69be016179736a99041f67734b1fa6ab28154855b36dcfec08ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9XTW2.json", "taxon_id": "6239", "uniprot_accession": "Q9XTW2", "uniprot_release": "2026_03" } ], "pfam_id": "PF06702", "short_name": "Fam20C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06707", "short_name": "DUF1194", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06708", "short_name": "DUF1195", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1198-pf06711.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06711", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1198-pf06711.yaml" } ], "pfam_ids": [ "PF06711" ], "protein_name": "Uncharacterized protein YicN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRYLHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLRETEPEMQDINAFQMRYNAFFQPAEGVHWLH", "sequence_length": 150, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1fb660f6d768f5c94319a0689fbff8582af06135f34a8ca313ad9dbd826356eb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADL3.json", "taxon_id": "83333", "uniprot_accession": "P0ADL3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1198-pf06711.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06711", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1198-pf06711.yaml" } ], "pfam_ids": [ "PF06711" ], "protein_name": "Uncharacterized protein YicN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRYLHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLRETEPEMQDINAFQMRYNAFFQPAEGVHWLH", "sequence_length": 150, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1fb660f6d768f5c94319a0689fbff8582af06135f34a8ca313ad9dbd826356eb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADL4.json", "taxon_id": "199310", "uniprot_accession": "P0ADL4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1198-pf06711.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06711", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1198-pf06711.yaml" } ], "pfam_ids": [ "PF06711" ], "protein_name": "Uncharacterized protein YicN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRYLHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLRETEPEMQDINAFQMRYNAFFQPAEGVHWLH", "sequence_length": 150, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1fb660f6d768f5c94319a0689fbff8582af06135f34a8ca313ad9dbd826356eb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADL5.json", "taxon_id": "83334", "uniprot_accession": "P0ADL5", "uniprot_release": "2026_03" } ], "pfam_id": "PF06711", "short_name": "DUF1198", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Feline immunodeficiency virus (strain San Diego)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1199-pf06712.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06712", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1199-pf06712.yaml" } ], "pfam_ids": [ "PF06712" ], "protein_name": "Uncharacterized protein ORF3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDRNSKSVLVAFYRSGNIFRYNQCSDSMETSTISSPSRRIRNNFLGLLGTRGARLSRLSWGNDTSKS", "sequence_length": 68, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aaf132da797ef4e67d6460ac5b5900eca9dc9d3ca200dcd4d128b85287f6bd1a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P19031.json", "taxon_id": "11675", "uniprot_accession": "P19031", "uniprot_release": "2026_03" } ], "pfam_id": "PF06712", "short_name": "DUF1199", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/bacteriocin-immunity-go0030153.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030153", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/bacteriocin-immunity-go0030153.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/uncharacterized-protein-yyab-like-ph-domain-ipr009589.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009589", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/uncharacterized-protein-yyab-like-ph-domain-ipr009589.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bph-4-pf06713.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06713", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bph-4-pf06713.yaml" } ], "pfam_ids": [ "PF06713" ], "protein_name": "Uncharacterized protein YyaB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVYQTKRDVPVTLMIVFLILLIQADAIVPFVLGNMRVSGWIIFILLTLLNGLIIWSFIDLKYVLKEHHLIIKAGLIKHQIPYENIDKVVQKKKLWSGFRLIGSRHAITIYYQGGWGHAVISPQKSEEFIHKLKEKNSNIIIFTKSK", "sequence_length": 146, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a792513c09b169beea864c89221c31e5b191b681fc3ea13aee4a64c78ca824a5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P37523.json", "taxon_id": "224308", "uniprot_accession": "P37523", "uniprot_release": "2026_03" } ], "pfam_id": "PF06713", "short_name": "bPH_4", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06716", "short_name": "MP_p6", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1202-pf06717.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1202-pf06717.yaml" } ], "pfam_ids": [ "PF06717" ], "protein_name": "Uncharacterized protein YggM", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKQWIVGTALLMLMTGNAWADGEPPTENILKDQFKKQYHGILKLDAITLKNLDAKGNQATWSAEGDVSSSDDLYTWVGQLADYELLEQTWTKDKPVKFSAMLTSKGTPASGWSVNFYSFQAAASDRGRVVDDIKTNNKYLIVNSEDFNYRFSQLESALNTQKNSIPALEKEVKALDKQMVAAQKAADAYWGKDANGKQMTREDAFKKIHQQRDEFNKQNDSEAFAVKYDKEVYQPAIAACHKQSEECYEVPIQQKRDFDINEQRRQTFLQSQKLSRKLQDDWVTLEKGQYPLTMKVSEINSKKVAILMKIDDINQANERWKKDTEQLRRNGVIK", "sequence_length": 335, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "62b64e5d6190377e49038ee14324e4c4e027f85be0a7de45ff3e9cbc88a5754d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P46142.json", "taxon_id": "83333", "uniprot_accession": "P46142", "uniprot_release": "2026_03" } ], "pfam_id": "PF06717", "short_name": "DUF1202", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06718", "short_name": "DUF1203", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06721", "short_name": "DUF1204", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 22, "discovery_scanned": true, "example_count": 22, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/eryciii-like-n-pf21036.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/eryciii-like-n-pf21036.yaml" } ], "pfam_ids": [ "PF06722", "PF21036" ], "protein_name": "Enterobactin C-glucosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRILFVGPPLYGLLYPVLSLAQAFRVNGHEVLIASGGQFAQKAAEAGLVVFDAAPGLDSEAGYRHHEAQRKKSNIGTQMGNFSFFSEEMADHLVEFAGHWRPDLIIYPPLGVIGPLIAAKYDIPVVMQTVGFGHTPWHIRGVTRSLTDAYRRHNVGATPRDMAWIDVTPPSMSILENDGEPIIPMQYVPYNGGAVWEPWWERRPDRKRLLVSLGTVKPMVDGLDLIAWVMDSASEVDAEIILHISANARSDLRSLPSNVRLVDWIPMGVFLNGADGFIHHGGAGNTLTALHAGIPQIVFGQGADRPVNARVVAERGCGIIPGDVGLSSNMINAFLNNRSLRKASEEVAAEMAAQPCPGEVAKSLITMVQKG", "sequence_length": 371, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c930e61d26021e84d3e568a1402b2e3d8cf4d1c29ad7dde46d46e6e2d4389a38", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0H2V630.json", "taxon_id": "199310", "uniprot_accession": "A0A0H2V630", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/eryciii-like-n-pf21036.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/eryciii-like-n-pf21036.yaml" } ], "pfam_ids": [ "PF06722", "PF21036" ], "protein_name": "3-alpha-mycarosylerythronolide B desosaminyl transferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRVVFSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPALTEDITAAGLTAVPVGTDVDLVDFMTHAGHDIIDYVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTPHARLLWGPDITTRARQNFLGLLPDQPEEHREDPLAEWLTWTLEKYGGPAFDEEVVVGQWTIDPAPAAIRLDTGLKTVGMRYVDYNGPSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLEGVANIPDNVRTVGFVPMHALLPTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARMRDDMLAEPSPAEVVGICEELAAGRREPR", "sequence_length": 421, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c17f231bd05de9400f2d43dfbc4af923bdb9e3386437cbeafb0406d8b4f887e9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4F7P3.json", "taxon_id": "405948", "uniprot_accession": "A4F7P3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/macrolide-family-glycosyltransferase-tigr01426.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01426", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/macrolide-family-glycosyltransferase-tigr01426.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/erythromycin-biosynthesis-protein-ciii-like-c-terminal-domain-ipr010610.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010610", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/erythromycin-biosynthesis-protein-ciii-like-c-terminal-domain-ipr010610.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O05496", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06722" ], "protein_name": "Uncharacterized UDP-glucosyltransferase YdhE", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d80257de36474fee44e1b9641b5dd7976f93d32efd8e6ebfc2100456d86739f9", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKTVLILNFPAEGHVNPTLGITKAFSDKGYDVHYISTEKYKKRLEAAGATVHLHRDLLRTTPIHVGSPNGILDFVKIHIKTSLDILQIVKDLSKSIQFDFVYYDKFGAGELVRDYLDIPGVSSSASFLFGEEHLKILPLHPESGAPLELDQECEDLLAKMKETYGVAPKNLVQFMNNKGELNVVYTSRYFQPESDRFGDECLFIGPSFPKRAEKTDFPIEQLKDEKVIYISMGTVLDHTEDFFNLCIDAFSGFNGKVVIAAGEKADLTKLKQAPENFIIAPYVPQLEVLEQSDVFITHGGMNSVNEGIHFSVPLVVMPHDKDQPMVAQRLSELHAGYVISKDEVNAQILKQAVDEVLRNDQYTAGIKKINQSFKECMDMEEVMERIDELIRQKNK", "sequence_length": 395, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d80257de36474fee44e1b9641b5dd7976f93d32efd8e6ebfc2100456d86739f9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O05496.json", "taxon_id": "224308", "uniprot_accession": "O05496", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/macrolide-family-glycosyltransferase-tigr01426.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01426", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/macrolide-family-glycosyltransferase-tigr01426.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/erythromycin-biosynthesis-protein-ciii-like-c-terminal-domain-ipr010610.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010610", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/erythromycin-biosynthesis-protein-ciii-like-c-terminal-domain-ipr010610.yaml" } ], "pfam_ids": [ "PF06722" ], "protein_name": "Uncharacterized UDP-glucosyltransferase YojK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANVLMIGFPGEGHINPSIGVMKELKSRGENITYYAVKEYKEKITALDIEFREYHDFRGDYFGKNATGDEERDFTEMLCAFLKACKDIATHIYEEVKHESYDYVIYDHHLLAGKVIANMLKLPRFSLCTTFAMNEEFAKEMMGAYMKGSLEDSPHYESYQQLAETLNADFQAEIKKPFDVFLADGDLTIVFTSRGFQPLAEQFGERYVFVGPSITERAGNNDFPFDQIDNENVLFISMGTIFNNQKQFFNQCLEVCKDFDGKVVLSIGKHIKTSELNDIPENFIVRPYVPQLEILKRASLFVTHGGMNSTSEGLYFETPLVVIPMGGDQFVVADQVEKVGAGKVIKKEELSESLLKETIQEVMNNRSYAEKAKEIGQSLKAAGGSKKAADSILEAVKQKTQSANA", "sequence_length": 405, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7d93b9422d211f752605a578791337e96d6c0d4d40f5ff1904a93283ed730d0a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O31853.json", "taxon_id": "224308", "uniprot_accession": "O31853", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/macrolide-family-glycosyltransferase-tigr01426.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01426", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/macrolide-family-glycosyltransferase-tigr01426.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/erythromycin-biosynthesis-protein-ciii-like-c-terminal-domain-ipr010610.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010610", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/erythromycin-biosynthesis-protein-ciii-like-c-terminal-domain-ipr010610.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/eryciii-like-c-pf06722.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06722", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/eryciii-like-c-pf06722.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O34539", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06722" ], "protein_name": "NDP-glycosyltransferase YjiC", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "56efeab42629c3775bd3047d8effa692c0aee7ee5da499f53042928408673172", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKKYHISMINIPAYGHVNPTLALVEKLCEKGHRVTYATTEEFAPAVQQAGGEALIYHTSLNIDPKQIREMMEKNDAPLSLLKESLSILPQLEELYKDDQPDLIIYDFVALAGKLFAEKLNVPVIKLCSSYAQNESFQLGNEDMLKKIREAEAEFKAYLEQEKLPAVSFEQLAVPEALNIVFMPKSFQIQHETFDDRFCFVGPSLGERKEKESLLIDKDDRPLMLISLGTAFNAWPEFYKMCIKAFRDSSWQVIMSVGKTIDPESLEDIPANFTIRQSVPQLEVLEKADLFISHGGMNSTMEAMNAGVPLVVIPQMYEQELTANRVDELGLGVYLPKEEVTVSSLQEAVQAVSSDQELLSRVKNMQKDVKEAGGAERAAAEIEAFMKKSAVPQ", "sequence_length": 392, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "56efeab42629c3775bd3047d8effa692c0aee7ee5da499f53042928408673172", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34539.json", "taxon_id": "224308", "uniprot_accession": "O34539", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces antibioticus", "origins": [ { "cited_uniprot_accession": "O68841", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/oleandomycin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:16869", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/oleandomycin.yaml" } ], "pfam_ids": [ "PF06722" ], "protein_name": "Glycosyltransferase OleI", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MTSEHRSASVTPRHISFFNIPGHGHVNPSLGIVQGLVARGQRVSYGITDEFGAQVKAGRATAVVYGFILPEEFNPEELLAEDQGSRWACSLAEAFRVLPQLRTATPTTGRDLIVYDIASWPAPVLGRKWDIPFVQLSPTSVAYEGFEEDVPAVQDPTADRGEEAAAPAGTGDAEEGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVGCRAPSQIKGDTVGDNYTFVGPTYGDRSHQGTWEGPGHGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHVVLSVGRFVDPADLGEVPPNVEVHQWVPQLDILTKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQEIREAGGARAAADILEGILAEAG", "sequence_length": 424, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3d93f47a52460796086b262a5273bc170e7e27267932ba011f672a069679c1e9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O68841.json", "taxon_id": "1890", "uniprot_accession": "O68841", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/eryciii-like-c-pf06722.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06722", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/eryciii-like-c-pf06722.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/glyco-transf-28-pf03033.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03033", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/glyco-transf-28-pf03033.yaml" } ], "pfam_ids": [ "PF00169", "PF02893", "PF03033", "PF06722" ], "protein_name": "Sterol 3-beta-glucosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPITQIISASDSEAGPKPSISLVPDKPSEPETSPRHHRLSRSLSKFKRWRGRSNSSLSMGSSEQQELQDSPNEARSDDDENGYNNDNADDLAKSKYMMKSIAGLLTTASVYAGMNNAQEMNVLSQVDSEESDSSDSFQENIGRNEVKSKKENLKTKSHPEVPRLDKRKPTLFDFSITREKLSKDNVAKLRQRFCLDEQEPFLNDFPAWLLKDVLVQGHIFITTKHFLFFAYLPKNPRSVKMSGNLNIRTKLIRSTRYWCVLKNHLFSMYTSSTELYFPVLTIDLREVQKIETQKHTLNGSATKTFKLYTDESTFKFNADSEFSAKSWVNALKKEQFAAQNSENNSISLKIPLPNIIEIDDQPIVNKALTLRLRALESSQTYAIDDFMFVFMDGSGSQVKESLGEQLAILQKSGVNTLYYDIPAKKSKSSFGKETPATVEQKNNGEDSKYLNVPTSAVPSSENGKKSRFRFRERSNSWFRRAKPLEDSQVEDVEEIYKDAANDIDSSVHSTIHIHEQEDSQEQTVAWKPSHLKNFAEMWAAKPIHYRNKFIPFQKDDTYLIKETEEVSANERFRYHFKFNKEKSLISTYYTYLNRNVPVYGKIYVSNDTVCFRSLLPGSNTYMVLPLVDVETCYKEKGFRFGYFVLVIVIHGHEELFFEFSTEVARDDIERILLKLLDNIYASSAEGSNISSASLGDVQHNPDSAKLKLFEDKINAEGFEVPLMIDENPHYKTSIKPNKSYKFGLLTIGSRGDVQPYIALGKGLIKEGHQVVIITHSEFRDFVESHGIQFEEIAGNPVELMSLMVENESMNVKMLREASSKFRGWIDALLQTSWEVCNRRKFDILIESPSAMVGIHITEALQIPYFRAFTMPWTRTRAYPHAFIVPDQKRGGNYNYLTHVLFENVFWKGISGQVNKWRVETLGLGKTNLFLLQQNNVPFLYNVSPTIFPPSIDFSEWVRVTGYWFLDDKSTFKPPAELQEFISEARSKGKKLVYIGFGSIVVSNAKEMTEALVEAVMEADVYCILNKGWSERLGDKAAKKTEVDLPRNILNIGNVPHDWLFPQVDAAVHHGGSGTTGASLRAGLPTVIKPFFGDQFFYAGRVEDIGVGIALKKLNAQTLADALKVATTNKIMKDRAGLIKKKISKEDGIKTAISAIYNELEYARSVTLSRVKTPRKKEENVDATKLTPAETTDEGWTMI", "sequence_length": 1198, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "642b130ae0dca1652cadc6939473ca0e8573626c2bd6b288bc57dc8df5166342", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06321.json", "taxon_id": "559292", "uniprot_accession": "Q06321", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces argillaceus", "origins": [ { "cited_uniprot_accession": "Q194P6", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/polyketides/mithramycin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:31856", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/polyketides/mithramycin.yaml" } ], "pfam_ids": [ "PF06722", "PF21036" ], "protein_name": "Glycosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MRVLVCSTPLLGHFNPLLPLSWALRAEGHEVLVATDEGFASKVLERGLPVAPLSPVALRDVMARDRAGRPVPHTAEADRVWRSGHGWGRLGARHLAETVTLARRWRPDLIVTDPVEFAGPLAAAHLGIPRIEHGWGIRPNHEFALAAEEELEPELHAYGLAGLPRPARVLDTCSPSLQHPGTVGDPMRYIPVTGPAELPGWLDEPRKLPLVCLTFGSVLPSLAPDRMRGLITRLTHTLPALGVEVVVAIDPAGTRGMPPALPGVLSVGWQPVDHLMPRCAVLVHYGSSGMTMAATTAGVPQVVLTVPIADAPDNARRIEAAGLGIALPALDLDADRVEEACRALLTDPSWRARAAEVAAEQADRPTAAEVATGLTAAYG", "sequence_length": 379, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "610d7ec2e7ee7d369729817de3d3f4934cfce50489488352b5de58563242c3f8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q194P6.json", "taxon_id": "41951", "uniprot_accession": "Q194P6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces argillaceus", "origins": [ { "cited_uniprot_accession": "Q194P9", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/polyketides/mithramycin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:31856", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/polyketides/mithramycin.yaml" } ], "pfam_ids": [ "PF06722", "PF21036" ], "protein_name": "Glycosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MRVLVTTSPWPTHYFVVQPLAAAFRAAGHEVLVAAQPSMADLVTRSGLPMAAVGSDIDMVDIRRKTLSQELDARQKPGEPARADDGGQVFDTWQQATLANLDPVMDLARTWKPDLVLADTMCPPGLVAAQELGVPGIRHLWGWDFYGSAGSEQILAELPGFYDVYRAHGLDVQGDPARRTVDPCPPSLQPPASPARLQVQYVPYNGAGRAPGPELRRTDKSRPRVCLTWGRSITRIMGERAFLLPRVVRALDGLDIEIVVAADAATHAKLGELPDNVRVLDSPPLHLLLDDCDAIVHQGGSGTVLNAIRVGLGQLAISHMADQDNISAALAGSGAGIHLRGEQAAEEAIRAAVIRLLEDPDIRMSADRLRAEMLSQPTPAQVAAGLDELATAHAHH", "sequence_length": 396, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9797be9806316c5f53f813397373fadb7dcc24469305792c8f12cbec4f8a3bf0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q194P9.json", "taxon_id": "41951", "uniprot_accession": "Q194P9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces argillaceus", "origins": [ { "cited_uniprot_accession": "Q194Q0", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/polyketides/mithramycin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:31856", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/polyketides/mithramycin.yaml" } ], "pfam_ids": [ "PF06722", "PF21036" ], "protein_name": "Glycosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MRILFTTFPWHSHHFPMVPLESAALAAGHEVRVASAPALMPVVTASGLPGIPVGQDVDLASLSNDRSRAAWHVQDRWPDDWPVRPELLDDEQFALIENLGRMQTVMASAMLDDLLSFARYWRPDLVVHDAVSLAGPVVAAALGVPNVSHLWGTPGLQRIELRRMGGEPLPEYVRLYERAGTTVRTEPSAWIDPSAPGIRYPAGPTCRQMRYVPYNGPGLLPDWLRREPSGSRVCVTWGATSMALRGGTVVELVRQCVEAAAEVADEVVVAVTEQTARALEDTPLPDHARVAVGLPLHLLVPSCDLVVHHGGAGTSMTAAVAGVRQLLITTRPEPTVNGTRLAASGAARHLMTTEVPAAREGVLLLRAEMDRLLSDPAHGAAARRLADGIRTQPAPADVVAELTHLVR", "sequence_length": 407, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3348eeda509ca1a42b73ef9148eb9c4c21b5722f232cb6de6524694a3450658c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q194Q0.json", "taxon_id": "41951", "uniprot_accession": "Q194Q0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces antibioticus", "origins": [ { "cited_uniprot_accession": "Q3HTL6", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/oleandomycin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:16869", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/oleandomycin.yaml" } ], "pfam_ids": [ "PF06722" ], "protein_name": "Oleandomycin glycosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MTTQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGARPVLYHSTLPGPDADPEAWGSTLLDNVEPFLNDAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVAEPMWREPRQTERGRAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHADRVDEDVYTFVGACQGDRAEEGGWQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQLAILRQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAADLIEAELPARHERQEPVGDRPNGG", "sequence_length": 415, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "75c7b6a52357496fb8b94bd0c46433bcdc5ab016c9ae470e47a39b197dbc6bcc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3HTL6.json", "taxon_id": "1890", "uniprot_accession": "Q3HTL6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces antibioticus", "origins": [ { "cited_uniprot_accession": "Q3HTL7", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/oleandomycin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:16869", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/oleandomycin.yaml" } ], "pfam_ids": [ "PF06722" ], "protein_name": "Oleandomycin glycosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MTSEHRSASVTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAGATPVVYDSILPKESNPEESWPEDQESAMGLFLDEAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDPTADRGEEAAAPAGTGDAEEGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDTVGDNYTFVGPTYGDRSHQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHVVLSVGRFVDPADLGEVPPNVEVHQWVPQLDILTKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQEIREAGGARAAADILEGILAEAG", "sequence_length": 424, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "295f5b5a0947dace7126853461935cab3959e844a3b394bd5b53f1dcfff0f651", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3HTL7.json", "taxon_id": "1890", "uniprot_accession": "Q3HTL7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces antibioticus", "origins": [ { "cited_uniprot_accession": "Q53685", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/oleandomycin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:16869", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/oleandomycin.yaml" } ], "pfam_ids": [ "PF06722" ], "protein_name": "Oleandomycin glycosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVLYHSTLPGPDADPEAWGSTLLDNRRTFLNDAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVAEPMWREPRQTERGRAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHADRVDEDVYTFVGACQGDRAEEGGWQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQLAILRQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAADLIEAELPARHERQEPVGDRPNVGDRPAGVRSDRQRSAL", "sequence_length": 430, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ffb5f3179964e10e1c1e3c8b10ea850e507e0469fbd7a95ef7a219af1c52cf16", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q53685.json", "taxon_id": "1890", "uniprot_accession": "Q53685", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Actinoplanes teichomyceticus", "origins": [ { "cited_uniprot_accession": "Q6ZZI3", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/teicoplanin-a2-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-77f24cb6bc", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/teicoplanin-a2-1.yaml" }, { "cited_uniprot_accession": "Q6ZZI3", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/teicoplanin-a2-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:85251", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/teicoplanin-a2-2.yaml" }, { "cited_uniprot_accession": "Q6ZZI3", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/teicoplanin-a2-3.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:34996", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/teicoplanin-a2-3.yaml" }, { "cited_uniprot_accession": "Q6ZZI3", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/teicoplanin-a2-4.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:34997", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/teicoplanin-a2-4.yaml" }, { "cited_uniprot_accession": "Q6ZZI3", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/teicoplanin-a2-5.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-3af27c73f8", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/teicoplanin-a2-5.yaml" } ], "pfam_ids": [ "PF03033", "PF06722" ], "protein_name": "Vancomycin aglycone glucosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MRVLLSTTGGRGDVEPLVALAVRFRELGVDARVCAPPDCADRLAGVGVPLVEVGESVRAMMHGGKRPSPEDAPRLDAEAIATQFDKVPAAAEGCAAVVTTGLLSAAVAVRSVAEKLRIPYVYAAYCPIYLPSPYYPPPPALGGPPVPELTDNRAQWNRHSQGAYRRFGAALNSHRAAIGLPPVENIYDYAFSDHPWLAADPVLAPLQPTDLDVVQTGAWILPDQRPLSAELEGFLRAGSPPVYVGFGSGPAPAEAARVAIEAVRAQGRRVVLSSGWAGLGRIDEGDDCLVVGEVNHQVLFGRVAAVVHAGSAGTTTAVTRAGAPQVVVPQMTDQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALTPGIRARAAAVAGTIRTDGTTVAAKLLLEAISRQRSSVSA", "sequence_length": 408, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3880d45e39491c12629643c036e8358e7f16385084dafa773aad1763df6e1ed3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZZI3.json", "taxon_id": "1867", "uniprot_accession": "Q6ZZI3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Actinoplanes teichomyceticus", "origins": [ { "cited_uniprot_accession": "Q6ZZJ7", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/teicoplanin-a2-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-77f24cb6bc", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/teicoplanin-a2-1.yaml" }, { "cited_uniprot_accession": "Q6ZZJ7", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/teicoplanin-a2-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:85251", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/teicoplanin-a2-2.yaml" }, { "cited_uniprot_accession": "Q6ZZJ7", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/teicoplanin-a2-3.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:34996", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/teicoplanin-a2-3.yaml" }, { "cited_uniprot_accession": "Q6ZZJ7", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/teicoplanin-a2-4.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:34997", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/teicoplanin-a2-4.yaml" }, { "cited_uniprot_accession": "Q6ZZJ7", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/teicoplanin-a2-5.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-3af27c73f8", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/teicoplanin-a2-5.yaml" } ], "pfam_ids": [ "PF03033", "PF06722" ], "protein_name": "Glycosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MRVLFSSYGTRGDVEPLVALAVRLRELGAEVRMCASPDYVERLAEVEVPMVPIGQPVRAGARKGAAPPGAPEAVAEVIAEQFDRVPPFAEGCDAVVASGLVSTAVAVRSVAEKLGIHHYAYAVLSPSFLRAPGVTDSRDLRARANQGAYRQFGGPLNSHRAAVGLPPVEKVIDYAFTERPWLAADPVLDPLRPTDPDVVQTGAWILPDQRPLSAELEGFLRAGSPPVYVGFGSGPAPAEAARVAIEAVRAQGRRVVLSSGWAGLGRIDEGDDCLVVGEVNHQVLFGRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALTPGIRARAAAVAGTIRTDGTTVAAKLLLEAISRQRSSVPA", "sequence_length": 393, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5464c25dfb307b88472b2934191245fe558e316465a9c4e4b6edbc376b8d50e0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZZJ7.json", "taxon_id": "1867", "uniprot_accession": "Q6ZZJ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lentzea aerocolonigenes", "origins": [ { "cited_uniprot_accession": "Q8KHE4", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/rebeccamycin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:135511", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/rebeccamycin.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8KHE4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06722" ], "protein_name": "4'-demethylrebeccamycin synthase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3c2396352370adb71ca4a398de3ba4ac9c03c500e169b869c09d8b903814b0d0", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGARVLVATTPGDGHVNPMVPVAQEMVSRGHEVRWYTGKAFRSTVERTGARHEPMRDAHDFGGMPREEAFPQHAGLTGITGMIAGFRDIFIEPAADQMTDLLALLEDFPADVLVTDETFFGAGFVSERTGIPVAWIATSIYVFSSRDTAPLGLGLPPSSSRLGRLRNTVLKQLTDRVVMRDLRRHADVVRDRVGLPRIRKGAFENIMRTPDLYLLGTVPSFEYPRGDMPPEVRFVGPFVSPAPPDFTPPAWWGELDSGRPVVHVTQGTVANDAERLLLPAIRALAAEDVLVVATTGAPLELEPMPANVRVERFIPHHALLPHVDAMVTNGGYGGVNTALAHGVPLVVAAATEEKHEVAARVSWSGAGVHLKKRRLSERDIRRAVRAVLDEPRFRVHAARLRDEYAARDAVVDAVDLIEGLV", "sequence_length": 421, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3c2396352370adb71ca4a398de3ba4ac9c03c500e169b869c09d8b903814b0d0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8KHE4.json", "taxon_id": "68170", "uniprot_accession": "Q8KHE4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Amycolatopsis orientalis", "origins": [ { "cited_uniprot_accession": "Q9AFC7", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/vancomycin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:28001", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/vancomycin.yaml" } ], "pfam_ids": [ "PF03033", "PF06722" ], "protein_name": "Devancosaminyl-vancomycin vancosaminetransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVGVPHVPVGLPQHMMLQEGMPPPPPEEEQRLAAMTVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHLPPAYDEPTTPGVTDIRVLWEERAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGERPCWPADPVLAPLQPDVDAVQTGAWLLSDERPLPPELEAFLAAGSPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVNFQALFRRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVLAPETRARAEAVAGMVLTDGAAAAADLVLAAVGREKPAVPA", "sequence_length": 408, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "74cc75693838a9631589845886a55a594b93ffa886eb096ea0945db16dfc4f24", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9AFC7.json", "taxon_id": "31958", "uniprot_accession": "Q9AFC7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces galilaeus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/eryciii-like-n-pf21036.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/eryciii-like-n-pf21036.yaml" } ], "pfam_ids": [ "PF06722", "PF21036" ], "protein_name": "Aklavinone 7-beta-L-rhodosaminyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRVLLTSFALDAHFNGSVPLAWALRAAGHEVRVASQPALTASITAAGLTAVPVGADPRLDEMVKGVGDAVLSHHADQSLDADTPGQLTPAFLQGWDTMMTATFYTLINDDPMVDDLVAFARGWEPDLILWEPFTFAGAVAAKVTGAAHARLLSFPDLFMSMRRAYLAQLGAAPAGPAGGNGTTHPDDSLGQWLEWTLGRYGVPFDEEAVTGQWSVDQVPRSFRPPSDRPVVGMRYVPYNGPGPAVVPDWLRVPPTRPRVCVTLGMTARTSEFPNAVPVDLVLKAVEGLDIEVVATLDAEERALLTHVPDNVRLVDHVPLHALLPTCAAIVHHGGAGTWSTALVEGVPQIAMGWIWDAIDRAQRQQALGAGLHLPSHEVTVEGLRGRLVRLLDEPSFTAAAARLRAEAESEPTPAQVVPVLERLTAQHRAREPRRPGGTSPCVS", "sequence_length": 443, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cf1abc62296ffabd754a0973c12427b5a68d309c132ea57062b5f99bfbc0d59c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9L4U6.json", "taxon_id": "33899", "uniprot_accession": "Q9L4U6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/erythromycin-biosynthesis-protein-ciii-like-c-terminal-domain-ipr010610.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glycosyltransferase-family-28-n-terminal-domain-ipr004276.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR004276", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycosyltransferase-family-28-n-terminal-domain-ipr004276.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/eryciii-like-c-pf06722.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06722", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/eryciii-like-c-pf06722.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/glyco-transf-28-pf03033.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03033", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/glyco-transf-28-pf03033.yaml" } ], "pfam_ids": [ "PF03033", "PF06722" ], "protein_name": "Sterol 3-beta-glucosyltransferase UGT80A2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPEISPAELAKVSSSSSSSSSSSSGRASVKIEEIEGGAAASGVVIVSEELETNPKTVVASIADETVAESSGTGNKSFSRVWTMPLEGSSSSDKAESSSTNQPRLDKSKTERQQKVTHILAEDAAKIFDDKISAGKKLKLLNRIATVKHDGTVEFEVPADAIPQPIVVDRGESKNGVCADESIDGVDLQYIPPMQIVMLIVGTRGDVQPFVAIAKRLQDYGHRVRLATHANFKEFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPIQRNQMKDIIYSLLPACKEPDPDSGISFKADAIIANPPAYGHTHVAEALKIPIHVFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVDSLIWLGIRDMVNDLRKKKLKLRPVTYLSGTQGSGSNIPHGYMWSPHLVPKPKDWGPQIDVVGFCYLDLASNYEPPAELVEWLEAGDKPIYIGFGSLPVQEPEKMTEIIVEALQRTKQRGIINKGWGGLGNLKEPKDFVYLLDNVPHDWLFPRCKAVVHHGGAGTTAAGLKASCPTTIVPFFGDQPFWGERVHARGVGPSPIPVDEFSLHKLEDAINFMLDDKVKSSAETLAKAMKDEDGVAGAVKAFFKHLPSAKQNISDPIPEPSGFLSFRKCFGCS", "sequence_length": 637, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e5a1253d61973115c94be5f2f0303f5676a3075c85e2a6ac3e37582550e81be8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M8Z7.json", "taxon_id": "3702", "uniprot_accession": "Q9M8Z7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/sterol-3-beta-glucosyltransferase-activity-go0016906.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016906", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/sterol-3-beta-glucosyltransferase-activity-go0016906.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/erythromycin-biosynthesis-protein-ciii-like-c-terminal-domain-ipr010610.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010610", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/erythromycin-biosynthesis-protein-ciii-like-c-terminal-domain-ipr010610.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glycosyltransferase-family-28-n-terminal-domain-ipr004276.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR004276", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycosyltransferase-family-28-n-terminal-domain-ipr004276.yaml" } ], "pfam_ids": [ "PF03033", "PF06722" ], "protein_name": "Sterol 3-beta-glucosyltransferase UGT80B1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASNVFDHPLQELEGEDNGVKSEKASLLETSGSVDTTPEDSGHRSSDGHRGLDHCETAPVGLYGDMLINDSEIQYSRSLTEKGSPAIHNLKLDRLSEQEKQKLIVELVRIQNDGTVEVIDNGTPVSELWEFEPTKGQSTITYEKSLTESFRSIPRLKIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRSFVRAAGVEFYPLGGDPRELAAYMARNKGLIPSGPSEISKQRKQLKAIIESLLPACIEPDLETATSFRAQAIIANPPAYGHVHVAEALGVPIHIFFTMPWTPTNEFPHPLARVPQSAAYWLSYIVVDLMVWWSIRTYINDFRKRKLNLAPIAYFSTYHGSISHLPTGYMWSPHVVPKPSDWGPLVDVVGYCFLNLGSKYQPREEFLHWIERGSPPVYIGFGSMPLDDPKQTMDIILETLKDTEQRGIVDRGWGGLGNLATEVPENVFLVEDCPHDWLFPQCSAVVHHGGAGTTATGLKAGCPTTIVPFFGDQFFWGDRIYEKGLGPAPIPIAQLSVENLSSSIRFMLQPEVKSQVMELAKVLENEDGVAAAVDAFHRHLPPELPLPESSSEKKDEDDRPDLLQWFFIQIGKKCCLPCGGV", "sequence_length": 615, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7abb0c983c1dcc834ca5917de753290225df7bc954561411263ab9fbec0a4162", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9XIG1.json", "taxon_id": "3702", "uniprot_accession": "Q9XIG1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Amycolatopsis keratiniphila", "origins": [ { "cited_uniprot_accession": "R4SKH3", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/vancomycin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:28001", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/vancomycin.yaml" } ], "pfam_ids": [ "PF03033", "PF06722" ], "protein_name": "Glycosyl transferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MRVLLSVCGTRGDVEIAVSLAVRLKALGVGTRMCAPPAAAERLAEVEVPHVPVGLPQHMMLQEGMPPPPPEEERRLAAMTVEMQFDAIPSAAEGCVAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHFPPPYDEPTTPGVTDHRTLWEERAHRFAERYGETLNRRRAAIGLPPVEDVFGYGHGDRPILSADPVLAPLQPDVDAVQTGAWILTDDRPLPPELEAFLAAGPPPVHVGFGSSSGKGIADAAKIAVEVSRAHGRRVILSRGWTDLLLPDDREDCFAIGEVNFQALFPRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAARVADLGIGVAHDGPTPTFESLSAALTTVLAPETRARARAVAAMAQTDGAAAAADLVLAAVGGNEPAVPA", "sequence_length": 408, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0ced1ab217e4a8ea21afb030ddaa12c5d9f98017220c46ba147895932af948c6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/R4SKH3.json", "taxon_id": "129921", "uniprot_accession": "R4SKH3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Amycolatopsis keratiniphila", "origins": [ { "cited_uniprot_accession": "R4SMY8", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/vancomycin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:28001", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/vancomycin.yaml" } ], "pfam_ids": [ "PF03033", "PF06722" ], "protein_name": "Glycosyl transferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MMRVLLSTCGSRGDVEPLVALAVRLRERGAEVRMCAPPDCADRLAEVDVPHLPLGASARPSAGQAKPLTAEDMLRFTTETIATQFERIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYGFHCPSYVPSPYYAPPPPLGEPPAPDGTDIQALWERNNQSAYRRYGEPLNSRRAAIGLPPVEDIFGHGYTDHPWMAADPVLAPLQPTDLDAVQTGAWILPDERPISAELEAFLDAGAPPVYLGFGSLRAPADAAKVAIEAIRAHGHRVILSRGWADLVLPDDREDCFAIGEVNQQVLFRRVAAVIHHGGAGTTHVATRAGVPQILVPQIADQPYYAARVAELGVGVAHDGPTPTFDTLSAALTKALAPETRVRAEAVAETVQTDGAAVAADLLFAAVTGNQPAVPA", "sequence_length": 409, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f1a8ba02d78ead9617ce34e37fc8600de4c641336a245f0b9717f3d82caa212", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/R4SMY8.json", "taxon_id": "129921", "uniprot_accession": "R4SMY8", "uniprot_release": "2026_03" } ], "pfam_id": "PF06722", "short_name": "EryCIII-like_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1206-ipr009597.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009597", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1206-ipr009597.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1206-pf06724.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06724", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1206-pf06724.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P39139", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06724" ], "protein_name": "Uncharacterized protein YxxB", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b06033c0f91553cb9bc4724e03ed0374cac4823463e9d59b5e27839ac74447b6", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAVKDRYMSKIKQETKPWIKRFGRLGYFAFGGVFILLGVLAFMTAAGAGRAKDSSGALQTLSRMPYGSLLLFFIGIGLIGYVIWMVLSAIKDTEGHGNSRRGLSRRIGNFFSAAVYTSIAWNALRFVFGQGDGGTSEQTWSAYVLAQPFGQWLTGLTGAGFIVFAIVQFMKGVRAAFMKEFDTSKMNKQMICITKNTGRAGNIARAIIFSAIGYFLIKTAMTADPDDTRGFDGALAELAQQPHGKLILSILALGLILYGMYAIMKGIYQHMTWEK", "sequence_length": 275, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b06033c0f91553cb9bc4724e03ed0374cac4823463e9d59b5e27839ac74447b6", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P39139.json", "taxon_id": "224308", "uniprot_accession": "P39139", 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"data/traits/sequence/domain/cdd/the-bin-amphiphysin-rvs-bar-domain-of-family-with-sequence-similarity--cd07598.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd07598", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/the-bin-amphiphysin-rvs-bar-domain-of-family-with-sequence-similarity--cd07598.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cby1-interacting-bar-domain-containing-protein-1-2-bar-domain-ipr035590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cby1-interacting-bar-domain-containing-protein-1-2-bar-domain-ipr035590.yaml" } ], "pfam_ids": [ "PF06730" ], "protein_name": "CBY1-interacting BAR domain-containing protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIVFSRDSQVRVMENTVANTEKYFGQFCSLLAAYTRKTARLRDKADQLVKQLIDFANSENPELRATMRGFAEDLAKVQDYRQAQVERLETKVVNPLKLYGAQIKQTRAEIKKFKHVQNHEIKQLEKLEKLRQKSPSDQQMISQAETRVQRAAVDSSRTTLQLEETVDGFQRQKLKDLQKFFCDFVTIEMVFHAKAVEVYSSAFQTLEKYDLERDLLDFRAKMQGVYGHYDTRLLANTSPPPSVLQSLASQGTLQVQLSRANEDPEHPHANHGRFSLCEWVVKGQPAHCVCGQGGHLMLPGHSL", "sequence_length": 304, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "629bef20e6e51f94e265050f8098e249ab129099adafa6ee102927d0d4338a78", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZTR7.json", "taxon_id": "9606", "uniprot_accession": "Q6ZTR7", "uniprot_release": 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"MLRRNLDERDAQTKQLQDAVTNVEKHFGELCQIFAAYVRKTARLRDKADLLVNEINLYASTETPNLKQGLKDFADEFAKLQDYRQAEVERLEAKVVEPLKAYGTIVKMKRDDLKATLTARNREAKQLSQLERTRQRNPSDRHVISQAETELQRATIDATRTSRHLEETIDNFEKQKIKDIKNILSEFITIEMLFHGKALEVFTAAYQNIQNIDEDEDLEVFRNSLYLSDYPSRLDIVRANSKSPLQRSLSTKCTSGTGQISTCRTRKDQQVEDEDDEELDVTEDEN", "sequence_length": 286, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "441e1ec25605b5cc9a24684b2c7e3225847d5c7a64f6f8499e0948be0174b264", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BP22.json", "taxon_id": "10090", "uniprot_accession": "Q8BP22", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cby1-interacting-bar-domain-containing-protein-1-2-bar-domain-ipr035590.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fam92-pf06730.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06730", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fam92-pf06730.yaml" } ], "pfam_ids": [ "PF06730" ], "protein_name": "CBY1-interacting BAR domain-containing protein homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFRRGKLSFLNTKDDRVKIINERINITERHLMEMCSSFALVTRKMAKYRDSFDELAKSVKSYADDEEINESLCQGLKSFTNAVTIMGDYMDINVHRLEHKIVNELAQFEQLCKSTRDNLRLAVIARDKEVLRQRQMLELKSKFSANNSAADSELFKAKMEVQRTNKEIDDIIGNFEQRKLRDLKQIISDFILIAMKQHTKALEILSASYYDIGTIDERDDFIEFQKLMKTKEELASRKTALKKGLRSQSMDSLEHEHLVSPLKRRPKLSRSNRNLTGAGINHGSKTEPEDETDEQDEEEDDEDEETEQSGEEDEESGTATDDEREPTQPGNQVPPRENVFGAKIRSASKDIATPSTSASATSAPSKPSRQTVKHPFKAVASTHVRLQKQFHVPQH", "sequence_length": 395, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4701968eb1e72cd078373862f07f30e301b1e453bd6eb2c58e19d8f66a74fa42", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VK91.json", "taxon_id": "7227", "uniprot_accession": "Q9VK91", "uniprot_release": "2026_03" } ], "pfam_id": "PF06730", "short_name": "FAM92", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { 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"MGDQPKATTTATGGAAGPVPEGDAVMATTNQDALAKGAGDGPAQDAAQEPGQAEHGEPGDGGDGGDDGATDAGASSLPPSEIGGRAPLDTACSDADGGAPSSLAGGIVGPPSPLTGCYLLIVLGEPHSEEHKDNILQHLLKGFLSWDVSDCHVDLEEELNTITQHAPEGEEARHGERLIQYASENLVTEVLIHPQYNTLIQCMRNLLSSFTRHRHIIHAGYTFSGNGSWILQDGTFSVADFSEAFQEHDVQRVIRAYADTITMNIHCADAGLWHTLPEKAFARQCRIRINPVDVLDTSSECINGFIDYLAPMVMPTSLRELLETSDVVGNIRFTHPTLYVFPGGQGDAALFGINGFNMLVDGGFNRKACFWDFARHLDRLDAVLMTRLNNSNVQGLGAVVSRKRDAHVYPQIGHFFGNVPDRKGLPSPDGDKDRDPLLIDLFERGHGIVSDLKALDLKPQCCYRNQEPVNLYHKVGHGTLDMYVISPARDSKEVKEFLQKWHAGDQRLFAARDSRDFNFPLQNLVSICALLVWQPANPDDTITRILFPGSTPDFKIQEGLEKLKHLEFMKHSTCTAKSIAPAIQTVTSTRKSLKSAIEATPAPPSASYKTTKFSPVASAALAVQHPQQQDNKAKEAAAAAAAAAAAAASAATIARAKADSMDTDAEPEHEADPEPADTGDEAAPTEQEPEAETEPEPEHEPEAEQDKDVGEEKKVEVLIMKPQQATPAVIAASGKDGVDAASADATPTGKLSKASAKGKADKPRAEVKPVVRSRIDTKPPKSMDRKLAKRDEKKSSPTTTPAARAPVAQNAKPKVLSRPATKSSPSSTPAKSAKEANNRKVLESKQQAARVQATSTVSRRVTSTASERRVQQQAEAKTAATGATQATQRKPISRRPRGVSPSKRAPAPGSPVKQAKPKAADLKKTRLDKGGTTDSSLVSTPSADEATAAKKLQDLTASQELDAEKQRELDDLKEEQEVVREIEAVFSRDEMKRQQHQQIKAELREMPAEGTGDGENEPDEEEEYLIIEKEEVEQYTEDSIVEQESSMTKEEEIQKHQRDSQESEKKRKKSAEEEIEAAIAKVEAAERKARLEGASARQDESELDVEPEQSKIKAEVQDIIATAKDIAKSRTEEQLAKPAEEELSSPTPEEKLSKKTSDTKDDQIGAPVDVLPVNLQESLPEEKFSATIESGATTAPTLPEDERIPLDQIKEDLVIEEKYVKEETKEAEAIVVATVQTLPEAAPLAIDTILASATKDAPKDANAEALGELPDSGERVLPMKMTFEAQQNLLRDVIKTPDEVADLPVHEEADLGLYEKDSQDAGAKSISHKEESAKEEKETDDEKENKVGEIELGDEPNKVDISHVLLKESVQEVAEKVVVIETTVEKKQEEIVEATTVITQENQEDLMEQVKDKEEHEQKIESGIITEKEAKKSASTPEEKETSDITSDDELPAQLADPTTVPPKSAKDREDTGSIESPPTIEEAIEVEVQAKQEAQKPVPAPEEAIKTEKSPLASKETSRPESATGSVKEDTEQTKSKKSPVPSRPESEAKDKKSPFASGEASRPESVAESVKDEAGKAESRRESIAKTHKDESSLDKAKEQESRRESLAESIKPESGIDEKSALASKEASRPESVTDKSKEPSRRESIAESLKAESTKDEKSAPPSKEASRPGSVVESVKDETEKSKEPSRRESIAESAKPPIEFREVSRPESVIDGIKDESAKPESRRDSPLASKEASRPESVLESVKDEPIKSTEKSRRESVAESFKADSTKDEKSPLTSKDISRPESAVENVMDAVGSAERSQPESVTASRDVSRPESVAESEKDDTDKPESVVESVIPASDVVEIEKGAADKEKGVFVSLEIGKPDSPSEVISRPGPVVESVKPESRRESSTEIVLPCHAEDSKEPSRPESKVECLKDESEVLKGSTRRESVAESDKSSQPFKETSRPESAVGSMKDESMSKEPSRRESVKDGAAQSRETSRPASVAESAKDGADDLKELSRPESTTQSKEAGSIKDEKSPLASEEASRPASVAESVKDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDEAEKSKEETRRESVAEKSPLPSKEASRPASVAESIKDEAEKSKEESRRESAAEKSPLPSKEASRPASVAESVKDEADKSKEESRRESMAESGKAQSIKGDQSPLKEVSRPESVAESVKDDPVKSKEPSRRESVAGSVTADSARDDQSPLESKGASRPESVVDSVKDEAEKQESRRESKTESVIPPKAKDDKSPKEVLQPVSMTETIREDADQPMKPSQAESRRESIAESIKASSPRDEKSPLASKEASRPGSVAESIKYDLDKPQIIKDDKSTEHSRRESLEDKSAVTSEKSVSRPLSVASDHEAAVAIEDDAKSSISPKDKSRPGFVAETVSSPIEEATMEFSKIEVVEKSSLALSLQGGSGGKLQTDSSPVDVAEGDFSHAVASVSTVTPTLTKPAELAQIGAAKTVSSPLDEALRTPSAPEHISRADSPAECASEEIASQDKSPQVLKESSRPAWVAESKDDAAQLKSSVEDLRSPVASTEISRPASAGETASSPIEEAPKDFAEFEQAEKAVLPLTIELKGNLPTLSSPVDVAHGDFPQTSTPTSSPTVASVQPAELSKVDIEKTASSPIDEAPKSLIGCPAEERPESPAESAKDAAESVEKSKDASRPPSVVESTKADSTKGDISPSPESVLEGPKDDVEKSKESSRPPSVSASITGDSTKDVSRPASVVESVKDEHDKAESRRESIAKVESVIDEAGKSDSKSSSQDSQKDEKSTLASKEASRRESVVESSKDDAEKSESRPESVIASGEPVPRESKSPLDSKDTSRPGSMVESVTAEDEKSEQQSRRESVAESVKADTKKDGKSQEASRPSSVDELLKDDDEKQESRRQSITGSHKAMSTMGDESPMDKADKSKEPSRPESVAESIKHENTKDEESPLGSRRDSVAESIKSDITKGEKSPLPSKEVSRPESVVGSIKDEKAESRRESVAESVKPESSKDATSAPPSKEHSRPESVLGSLKDEGDKTTSRRVSVADSIKDEKSLLVSQEASRPESEAESLKDAAAPSQETSRPESVTESVKDGKSPVASKEASRPASVAENAKDSADESKEQRPESLPQSKAGSIKDEKSPLASKDEAEKSKEESRRESVAEQFPLVSKEVSRPASVAESVKDEAEKSKEESPLMSKEASRPASVAGSVKDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESVKDEADKSKEESRRESGAEKSPLASKEASRPASVAESIKDEAEKSKEESRRESVAEKSPLPSKEASRPTSVAESVKDEAEKSKEESRRDSVAEKSPLASKEASRPASVAESVQDEAEKSKEESRRESVAEKSPLASKEASRPASVAESIKDEAEKSKEESRRESVAEKSPLASKEASRPTSVAESVKDEAEKSKEESSRDSVAEKSPLASKEASRPASVAESVQDEAEKSKEESRRESVAEKSPLASKEASRPASVAESVKDDAEKSKEESRRESVAEKSPLASKEASRPASVAESVKDEAEKSKEESRRESVAEKSPLPSKEASRPTSVAESVKDEAEKSKEESRRESVAEKSSLASKKASRPASVAESVKDEAEKSKEESRRESVAEKSPLASKEASRPASVAESVKDEAEKSKEESRRESVAEKSPLPSKEASRPTSVAESVKDEADKSKEESRRESGAEKSPLASMEASRPTSVAESVKDETEKSKEESRRESVTEKSPLPSKEASRPTSVAESVKDEAEKSKEESRRESVAEKSPLASKESSRPASVAESIKDEAEGTKQESRRESMPESGKAESIKGDQSSLASKETSRPDSVVESVKDETEKPEGSAIDKSQVASRPESVAVSAKDEKSPLHSRPESVADKSPDASKEASRSLSVAETASSPIEEGPRSIADLSLPLNLTGEAKGKLPTLSSPIDVAEGDFLEVKAESSPRPAVLSKPAEFSQPDTGHTASTPVDEASPVLEEIEVVEQHTTSGVGATGATAETDLLDLTETKSETVTKQSETTLFETLTSKVESKVEVLESSVKQVEEKVQTSVKQAETTVTDSLEQLTKKSSEQLTEIKSVLDTNFEEVAKIVADVAKVLKSDKDITDIIPDFDERQLEEKLKSTADTEEESDKSTRDEKSLEISVKVEIESEKSSPDQKSGPISIEEKDKIEQSEKAQLRQGILTSSRPESVASQPESVPSPSQSAASHEHKEVELSESHKAEKSSRPESVASQVSEKDMKTSRPASSTSQFSTKEGDEETTESLLHSLTTTETVETKQMEEKSSFESVSTSVTKSTVLSSQSTVQLREESTSESLSSSLKVEDSSRRESLSSLLAEKGGIATNTSLKEDTSASASQLEELLVQSEECSSESIVSEIQTSIAQKSNKEIKDARETKVTSQFTTTTSSATKDDSLKETVAEFLATEKIVSAKEAFSTEATKSADDCLKKTTASAVSSTSASQRALFVGTDESRRESLLSQASESRLTHSDPEDEEPADDVDERSSVKESRSKSIATIMMTSIYKPSEDMEPISKLVEEEHEHVEELAQEVTSTSKTTTLLQSSEQSSTTTSSTSKTGASRVESITLTQMDQQTSQSQGDPADRKTPPTAPVSPGVKAMSSTGSAGSVIGAGAGAVAAGGKCESSAASIVSSSGPMSPKDISGKSSPGALTSESQSIPTPLGRESHTDTPESSPKPTSPFPRVSKDELKSLEMQHHSQEQMLAGAAAAAGAECEGDIPELHELRGLECTTALSGSTDKIITTTITTVTKVISADGKEIVTEQKTVTTTDSSEPDSEKVVVTTTRTTSESERDQLLPKEVALLRGLYRASTPGSEDDEDLLLGSPRSATSYELQHSSSGVSKRSDLDADGDESQDDIPPQYGSEEHSTARSILLPRTADPMATSFYGALPDSFDVVMKPSTEPIPIQGAPSGDSQSSESVESSSQTWAGHKFLDQADKDFQRALEEHVQARGAEVMSSVTAKYSYSPSKAEEMEQIVSGTAERQRFPLSDVQRARVAESGFATVGSVASQQQQQEKGGEVEQAVPTTTAVTASTTATASSTGALPKDRLEEWGKPLGLPSPAPLPVEGGADIRTTPKKERRLVATKTRLNNEKNLRRRSESPNKAGKKPAPVYVDLTYVPHNGNSYYAHVDFFKRVRARYYVFSGTEPSRQVYDALLEAKQTWEDKELEVTIIPTYDTDVLGYWVAENEELLAKHRIDLSPSASRCTINLQDHETSCSAYRLEF", "sequence_length": 5495, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f1acfd260acb43ab6fdc5c741c35e290edf985b15e00be7eb9d46f60d06de5f8", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q9W596.json", "taxon_id": "7227", "uniprot_accession": "Q9W596", "uniprot_release": "2026_03" } ], "pfam_id": "PF06740", "short_name": "MAP_Futsch", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06742", "short_name": "DUF1214", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/icmf-c-pf06744.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06744", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/icmf-c-pf06744.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/icmf-helical-pf21070.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21070", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/icmf-helical-pf21070.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/icmf-related-n-pf14331.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14331", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/icmf-related-n-pf14331.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/icmf-related-pf06761.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06761", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/icmf-related-pf06761.yaml" } ], "pfam_ids": [ "PF06744", "PF06761", "PF14331", "PF21070" ], "protein_name": "Type VI secretion system component TssM1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQSLAEVSAPDAASVATAEELATLKQRMDEALALLKRAKLGGSERRNLYELPWYVIIGPPGSGKTTALMNSGLDFPLAAQMGAGAIRGVGGTRNCDWWFTDEAVLLDTAGRYTTQDSHAQVDKAAWLGFLDLLKTQRKRRPIDGAFIAISLSDLLLGSDAERAAHAQAIRARIQELYQQLGVRFPIYVMLTKFDLVPGFMEFFDSLNREERAQVWGMTFALDDGKSAEGPLAVFDSEFALLEQRLTARLVERLQQERDPARRDLVYGFPQQFAALRECLGEFLNGVFKPNPYEERPLLRGLYFTSGTQEGSPIDRLIGSMAQSMNLDRQHLARQTGTGRSYFIERLFREVAFGERGLVGTNPKVERRRKWLTIGALSATALVVLAVTAVWIASYRANQSYIAAVDQRVDPLARGIESLSPAQRDVLAVLPQLNAVQNLAGDAPSWAEGYGLYQGDMLGEESASVYRKLLIAVFAPRLVTRIEEQLRSGGSSDFLYEGLKAYLMLGSPDHYDADFIKAWISLDWERNLPRDLSPEQRQALHAHLDALLERRPPSARLDQDLVEDLRRQLQQLPVAQRVYDRVKRQRLPKDVPDFRISDAAGRDAPLVFARKSGKPLTDPLSGFFTYRGYREVFLTASLSQAGTIAEEQWVLGRDLNDAGDAANLALDVRRLYFQDYLRQWDDLLADLTVVPITNVTQAADVLRILSGPTSPFRKLLEAVARETDLQKGDRLVAAQVKKAADGTVDKLKQRLGSLVGQEEEGAREQPRQVDSDPISAHFAELNSLVSKGEGGNEPAPIDSLLEDMNALYVQVSAMAGASGDSLLGDAKNQVAAAASRVALSAERQPPVVQGLVKNVVNSTTSSMMGSVRNQLNAAWISDVVSVYRQSLAGRYPIAAGSSRDATLEDFGHFFGAGGVMDSYFRQYLQPYVDTSASTWRWQPGAAQKLGINPGVLHTFQRAAAIRDAFFRSGGMQPTVRFELKPVTMDAAISQFILDLDGQQLTYDHGPSRPVAMQWPSANGLGVVRLTVTPPPSSGRSGLTLEGPWAWFRLLDQSDLERGNSPDRFTLRLRIDGSSIACELRASSAFNPFKSRVVSGFSLPERL", "sequence_length": 1101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bebf4ca32e4a3fcf37832116d0527de3a0740e1e81ea5ddba3f8581cfa84b5b7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9I755.json", "taxon_id": "208964", "uniprot_accession": "Q9I755", "uniprot_release": "2026_03" } ], "pfam_id": "PF06744", "short_name": "IcmF_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06746", "short_name": "DUF1216", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06748", "short_name": "DUF1217", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/determination-of-bilateral-symmetry-go0009855.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009855", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/determination-of-bilateral-symmetry-go0009855.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1218-pf06749.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06749", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1218-pf06749.yaml" } ], "pfam_ids": [ "PF06749" ], "protein_name": "Protein DESIGUAL 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESELGFLVSVVIICADITATVLGIEAEIAQSKAPHHHHQQHSRHSGSGCRRSPSDGAFAEGVAAMVLLFIVHVLANVLGGCTYIRSKQDFKRATANKILAVAFLVLSWIFFVVSYSTLMIGTLANSRTNRLCSLPHRWFFLIGGIFCLGHGVVTSAYYVSAIAAKKEDKENAQQENLANRSRA", "sequence_length": 184, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e77825826b9e2c0af90e70177d62141504904b0b1b886ebe8137e39becdae559", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2RVQ4.json", "taxon_id": "3702", "uniprot_accession": "A2RVQ4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1218-pf06749.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06749", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1218-pf06749.yaml" } ], "pfam_ids": [ "PF06749" ], "protein_name": "Protein MODIFYING WALL LIGNIN-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFIFLFGLAAFFLCLSAEFQKAKALLRAQVFLKGKDLKWDGESCYLPENRAFGLGIAALVCVSVAQIVGNVVICRGFTKTDKTRTTIFCIILLLFSWVNFAVAVTLISVGASMNREQIYGKGWLNRECYLVKDGVFAASGFLSVTTMAAILGAFAFKVKPSLQVENHDKRHTQNV", "sequence_length": 175, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eacb41bad8b88c5f2ca69f389e6d77a23dc0608f771dc7e3c14c09f4c7603ceb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A2RVU1.json", "taxon_id": "3702", "uniprot_accession": "A2RVU1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/determination-of-bilateral-symmetry-go0009855.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009855", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/determination-of-bilateral-symmetry-go0009855.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1218-pf06749.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06749", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1218-pf06749.yaml" } ], "pfam_ids": [ "PF06749" ], "protein_name": "Protein VASCULATURE COMPLEXITY AND CONNECTIVITY", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKIGGILVCLVIVGLDVAAAILGIQAEVAQNQVKHMRLWLFECREPSQDAFRLGLGAAAILVMAHVLLNLVGGCLCICSQDEFQRSSSTRQISMACLVLTWIVFAVGFGSIVIGTMSNSKSRSSCGFTHHHFLSIGGILCFLHALFCVAYYVSATAAKDEAK", "sequence_length": 163, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4c1124caff9c52becf237b5185d4650b6a56b6696ca62ea072a1629244da6480", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZV57.json", "taxon_id": "3702", "uniprot_accession": "Q9ZV57", "uniprot_release": "2026_03" } ], "pfam_id": "PF06749", "short_name": "DUF1218", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/autolysis-go0001896.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0001896", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/autolysis-go0001896.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-cytoskeleton-organization-go0051494.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051494", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-cytoskeleton-organization-go0051494.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-ftsz-dependent-cytokinesis-go2000245.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000245", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-ftsz-dependent-cytokinesis-go2000245.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cbta-toxin-pf06755.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cbta-toxin-pf06755.yaml" } ], "pfam_ids": [ "PF06755" ], "protein_name": "Cytoskeleton-binding toxin CbtA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGFSACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK", "sequence_length": 124, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2b524328b9db0e4e4ea3e8b15548add68df24f29f35238bfea382c75c73bdf64", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64524.json", "taxon_id": "83333", "uniprot_accession": "P64524", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cbta-toxin-pf06755.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cbta-toxin-pf06755.yaml" } ], "pfam_ids": [ "PF06755" ], "protein_name": "Toxin YkfI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTLPAITQRAVKPCLSPVAVWQMLLTRLLEQHYGLTINDTPFCNEAVIKEHIDAGITLADAVNFLVEKYELVRIDRKGFSWQEQSPYLRAADILRARQATGLLRQSRNNVVR", "sequence_length": 113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a24f2e3de3471414246e7f7ddab3a75603270ecce0302ba44d3bf420b6ada6f3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P77692.json", "taxon_id": "83333", "uniprot_accession": "P77692", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cbta-toxin-pf06755.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cbta-toxin-pf06755.yaml" } ], "pfam_ids": [ "PF06755" ], "protein_name": "Toxin YpjF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTLPATISQAAKPCLSPVAVWQMLLTRLLEQHYGLTLNDTPFSDETVIKEHIDAGITLADAVNFLVEKYELVRIDHRGFSWQQQSPYISVVDILRARRSTGLLKTNVK", "sequence_length": 109, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d0c44a9ff66a82734344fb29cbb654f01d4a583353ba328a3040e11d8461ca70", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q46953.json", "taxon_id": "83333", "uniprot_accession": "Q46953", "uniprot_release": "2026_03" } ], "pfam_id": "PF06755", "short_name": "CbtA_toxin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 9, "discovery_scanned": true, "example_count": 9, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/olduvai-pf06758.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/odv.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51316", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/odv.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A0A087WUL8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06758" ], "protein_name": "NBPF family member NBPF19", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "dd16091a63c54d4174cd0ef6e343aff12daf26dd605de844633ecd38ee1d6446", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRNLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLFHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEEHISFALYLDNRFFTLTVTSLHLVFQMLVIFPQ", 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"commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/olduvai-pf06758.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06758", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/olduvai-pf06758.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/odv.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51316", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/odv.yaml" } ], "pfam_ids": [ "PF06758" ], "protein_name": "Putative NBPF family member NBPF7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCLRFFSPVPGSTSSATNVTMVVSAGPWSSEKAEMNILEINEKLRPQLAENKQQFRNMKQKFLVTQMAGFLANQQNKYKYEECKDLIKSMLREELQFKEEKLAEQLKQAEELRQYKVLVHSQERELIQLREKLREGRDASHSLNQHLQALLTPDKHDNSQGQDFREQLAEGCRLARHLVHKLSPENDTDEDENDKTKELDKVQESPAPREEQKAEEKEVPEDSLEECAITYSNSHGPSDSNPPHKNIKITSEEDKVNSILVVDSESSQDEWQDALNILLENQNDDEEEEGKAPVPPQVTLWICGLKLQESEEKEVLQDSPEERVTTSCSDHDVSQSYQPCEGTFLALVEQKVCSAQDVASEHSNSKGEETPLGFPDTKYCWKDEKDERMSQKVAFLLDEKNYNSKPSSIPNTTLQGSFTED", "sequence_length": 421, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f607296ae1074c556582e72c0399f4bd4a558afd501164b1aa5ec622557e4173", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C2Y1.json", "taxon_id": "9606", "uniprot_accession": "P0C2Y1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/olduvai-domain-ipr010630.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/olduvai-domain-ipr010630.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/olduvai-pf06758.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06758", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/olduvai-pf06758.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/odv.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51316", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/odv.yaml" } ], "pfam_ids": [ "PF06758" ], "protein_name": "NBPF family member NBPF20", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRIGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRSYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRSYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRSYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQTPPCPRLSRELLDEKGPEVLQDSLDRSYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRSYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRSYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRSYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRSYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRSYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQTPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRTKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKKRRRGRKEGEEDQNPPCPRLNGVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMGVIFPQ", "sequence_length": 5207, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "598d80854d22af76292797aa90ae19cbe3868419b1b5d1dac2f85890e238b1f6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DPF2.json", "taxon_id": "9606", "uniprot_accession": "P0DPF2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/olduvai-domain-ipr010630.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/olduvai-domain-ipr010630.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/olduvai-pf06758.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06758", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/olduvai-pf06758.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/odv.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51316", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/odv.yaml" } ], "pfam_ids": [ "PF06758" ], "protein_name": "NBPF family member NBPF9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVSAGPWSSEKAEMNILEINEKLRPQLAENKQQFGNLKERCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLKEKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEDEKVLESSAPREVQKAEESKVAEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLAGFLANQQNKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQIEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEREDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTPSIPPEMLASYKSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLGRWYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDLDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKKRRRGRKEGEENQNPPCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMEVIFPQ", "sequence_length": 1111, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "acec4a30fa14e6a7a288ef1da64e7eae5e705a1d8003eb50f5492ae4a6731ec9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DPF3.json", "taxon_id": "9606", "uniprot_accession": "P0DPF3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/olduvai-domain-ipr010630.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/olduvai-domain-ipr010630.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/olduvai-pf06758.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06758", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/olduvai-pf06758.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/odv.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51316", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/odv.yaml" } ], "pfam_ids": [ "PF06758" ], "protein_name": "NBPF family member NBPF1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVSAGPWSSEKAETNILEINEKLRPQLAENKQQFRNLKEKCFVTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLNQHLQALLTPDKPDKSQGQDLQEQLAEGCRLAQQLFQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHSPCDSNQPHKNINITFEEDKVNSTLVVDRESSHDECQDAVNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLHPQLAEKKQQFRNLKEKCFVTQLACFLANQQNKYKYEECKDLIKSMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLNQHLQALLTPDKPDKSQGQDLQEQLAEGCRLAQQLFQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNINITFEEDKVNSALVVDRESSHDECQDAVNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLHPQLAEKKQQFRNLKEKCFVTQLACFLANQQNKYKNEECKDLIKSMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASCSLNQHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMPKAEEKEVPEDSLEECAITCSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYKSYSGTFHSLEEQQVCMAVDIGGHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYILEQQRVGWALDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYRSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEAVEPEVLQDSLDRCYSTPSSCLEQPDSCLPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSTKKRRRRGRKEGEEDQNPPCPRLSGMLMEVEEPEVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALDVDNRFLTLMGTSLHLVFQMGVIFPQ", "sequence_length": 1214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7543c3335264b2cb3239303e7b9763f4b212aab7736cd9d40f363b874c34fa59", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3BBV0.json", "taxon_id": "9606", "uniprot_accession": "Q3BBV0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/olduvai-domain-ipr010630.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/olduvai-domain-ipr010630.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/olduvai-pf06758.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06758", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/olduvai-pf06758.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/odv.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51316", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/odv.yaml" } ], "pfam_ids": [ "PF06758" ], "protein_name": "NBPF family member NBPF8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVSAGPWSSEKAEMNILEINEKLRPQLAENKQQFVNLKERCFLTQLAGFLANRQKKYKYEECKDLIRFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLKEKLQEGRDASRSLNEHLQALLTLDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEDEKVQKSSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILSVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLHPQLAEKKQQFRNLKEKCFLTQLAGFLANRQNKYKYEECKDLIKSMLRNERQFKEEKLAEQLKQAEELRQYKVLVHTQERELTQLREKLREGRDASLSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSALIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYKSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKIRRGRRSKKKRRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDRCYSTPSMYCELRDSFQHYRSVFYSFEEQHISFALDMDNRFFTLTVTSLYLVFQMGVIFPQ", "sequence_length": 942, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3f5625571168311ef75e1c94296a33489011605d6586a1aeb8c0f8decbf97b22", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3BBV2.json", "taxon_id": "9606", "uniprot_accession": "Q3BBV2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/olduvai-domain-ipr010630.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/olduvai-domain-ipr010630.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/olduvai-pf06758.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06758", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/olduvai-pf06758.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/odv.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51316", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/odv.yaml" } ], "pfam_ids": [ "PF06758" ], "protein_name": "NBPF family member NBPF12", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVSAGPWSSEKAEMNILEINEKLRPQLAENKQQFRNLKERCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQQLVQKLSPENDEDEDEDVQVEEDEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSIQPHKNIKITFEEDKVNSTVVVDRKSSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRSLKEKCFVTQLAGFLAKQQNKYKYEECKDLIKSMLRNELQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEDEKVLESSSPREMQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDKVNSSLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRSLKEKCFVTQVACFLAKQQNKYKYEECKDLLKSMLRNELQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSSPREMQKAEEKEVPEDSLEECAITCSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPERLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLAEKEPEVLQDSLDRCYSTPSVYLGLTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYRSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYRSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKKRRRGRKEGEEDQNPPCPRLSRELLAEKEPEVLQDSLDRWYSTPSVYLGLTDPCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYRSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYRSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKKRRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHITFALDMDNSFFTLTVTSLHLVFQMGVIFPQ", "sequence_length": 1457, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "36dae8013dbeda6ae9ddb96874551f908bfb330da2cc4bf2673a462f9c3b53ac", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q5TAG4.json", "taxon_id": "9606", "uniprot_accession": "Q5TAG4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cdk5-regulatory-subunit-associated-protein-2-myomegalin-coiled-coil-ipr056273.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056273", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cdk5-regulatory-subunit-associated-protein-2-myomegalin-coiled-coil-ipr056273.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/centrosomin-n-terminal-motif-1-ipr012943.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012943", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/centrosomin-n-terminal-motif-1-ipr012943.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/myomegalin-like-c-terminal-ipr060527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR060527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/myomegalin-like-c-terminal-ipr060527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cc-cdk5rap2-pf23246.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23246", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cc-cdk5rap2-pf23246.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cnn-1n-pf07989.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07989", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cnn-1n-pf07989.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pde4dip-pf26710.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pde4dip-pf26710.yaml" } ], "pfam_ids": [ "PF06758", "PF07989", "PF23246", "PF26710" ], "protein_name": "Myomegalin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNGYRTLSQHLNDLKKENFSLKLRIYFLEERMQQKYEASREDIYKRNIELKVEVESLKRELQDKKQHLDKTWADVENLNSQNEAELRRQFEERQQETEHVYELLENKIQLLQEESRLAKNEAARMAALVEAEKECNLELSEKLKGVTKNWEDVPGDQVKPDQYTEALAQRDKRIEELNQSLAAQERLVEQLSREKQQLLHLLEEPTSMEVQPMTEELLKQQKLNSHETTITQQSVSDSHLAELQEKIQQTEATNKILQEKLNEMSYELKCAQESSQKQDGTIQNLKETLKSRERETEELYQVIEGQNDTMAKLREMLHQSQLGQLHSSEGTSPAQQQVALLDLQSALFCSQLEIQKLQRVVRQKERQLADAKQCVQFVEAAAHESEQQKEASWKHNQELRKALQQLQEELQNKSQQLRAWEAEKYNEIRTQEQNIQHLNHSLSHKEQLLQEFRELLQYRDNSDKTLEANEMLLEKLRQRIHDKAVALERAIDEKFSALEEKEKELRQLRLAVRERDHDLERLRDVLSSNEATMQSMESLLRAKGLEVEQLSTTCQNLQWLKEEMETKFSRWQKEQESIIQQLQTSLHDRNKEVEDLSATLLCKLGPGQSEIAEELCQRLQRKERMLQDLLSDRNKQVLEHEMEIQGLLQSVSTREQESQAAAEKLVQALMERNSELQALRQYLGGRDSLMSQAPISNQQAEVTPTGRLGKQTDQGSMQIPSRDDSTSLTAKEDVSIPRSTLGDLDTVAGLEKELSNAKEELELMAKKERESQMELSALQSMMAVQEEELQVQAADMESLTRNIQIKEDLIKDLQMQLVDPEDIPAMERLTQEVLLLREKVASVESQGQEISGNRRQQLLLMLEGLVDERSRLNEALQAERQLYSSLVKFHAHPESSERDRTLQVELEGAQVLRSRLEEVLGRSLERLNRLETLAAIGGAAAGDDTEDTSTEFTDSIEEEAAHHSHQQLVKVALEKSLATVETQNPSFSPPSPMGGDSNRCLQEEMLHLRAEFHQHLEEKRKAEEELKELKAQIEEAGFSSVSHIRNTMLSLCLENAELKEQMGEAMSDGWEIEEDKEKGEVMVETVVTKEGLSESSLQAEFRKLQGKLKNAHNIINLLKEQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQHQEEGNVTVRPFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQDLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAEREETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGKQEEFRVYGKSENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSVTSDYSSSLERPRKLRAVGTLEGSSPHSVPDEDEGWLSDGTGAFYSPGLQAKKDLESLIQRVSQLEAQLPKNGLEEKLAEELRSASWPGKYDSLIQDQARELSYLRQKIREGRGICYLITRHAKDTVKSFEDLLRSNDIDYYLGQSFREQLAQGSQLTERLTSKLSTKDHKSEKDQAGLEPLALRLSRELQEKEKVIEVLQAKLDARSLTPSSSHALSDSHRSPSSTSFLSDELEACSDMDIVSEYTHYEEKKASPSHSDSIHHSSHSAVLSSKPSSTSASQGAKAESNSNPISLPTPQNTPKEANQAHSGFHFHSIPKLASLPQAPLPSAPSSFLPFSPTGPLLLGCCETPVVSLAEAQQELQMLQKQLGESASTVPPASTATLLSNDLEADSSYYLNSAQPHSPPRGTIELGRILEPGYLGSSGKWDVMRPQKGSVSGDLSSGSSVYQLNSKPTGADLLEEHLGEIRNLRQRLEESICINDRLREQLEHRLTSTARGRGSTSNFYSQGLESIPQLCNENRVLREDNRRLQAQLSHVSREHSQETESLREALLSSRSHLQELEKELEHQKVERQQLLEDLREKQQEVLHFREERLSLQENDSRLQHKLVLLQQQCEEKQQLFESLQSELQIYEALYGNSKKGLKAYSLDACHQIPLSSDLSHLVAEVRALRGQLEQSIQGNNCLRLQLQQQLESGAGKASLSPSSINQNFPASTDPGNKQLLLQDSAVSPPVRDVGMNSPALVFPSSASSTPGSETPIINRANGLGLDTSPVMKTPPKLEGDATDGSFANKHGRHVIGHIDDYSALRQQIAEGKLLVKKIVSLVRSACSFPGLEAQGTEVLGSKGIHELRSSTSALHHALEESASLLTMFWRAALPSTHIPVLPGKVGESTERELLELRTKVSKQERLLQSTTEHLKNANQQKESMEQFIVSQLTRTHDVLKKARTNLEVKSLRALPCTPAL", "sequence_length": 2346, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "29fb76cc8f7e92257216f7b929248432b205959017f92b4f69bf935d86af4166", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VU43.json", "taxon_id": "9606", "uniprot_accession": "Q5VU43", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/olduvai-domain-ipr010630.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/olduvai-domain-ipr010630.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/olduvai-pf06758.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06758", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/olduvai-pf06758.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/odv.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51316", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/odv.yaml" } ], "pfam_ids": [ "PF06758" ], "protein_name": "NBPF family member NBPF10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRSLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLYEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLSGFLANQQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERELTQLKEKLREGRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGSYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSQDRCYSTPSGCLELTDSCQPYRSAFYILEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAFDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEENHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELCDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDKIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEREVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMGVIFPQ", 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"data/traits/function/pathway/go/positive-regulation-of-lipoprotein-lipase-activity-go0051006.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051006", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-lipoprotein-lipase-activity-go0051006.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/lipase-maturation-factor-1-2-c-terminal-domain-ipr057433.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057433", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lipase-maturation-factor-1-2-c-terminal-domain-ipr057433.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/lipase-maturation-factor-1-2-n-terminal-domain-ipr057434.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057434", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lipase-maturation-factor-1-2-n-terminal-domain-ipr057434.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lmf1-c-pf25179.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25179", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lmf1-c-pf25179.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lmf1-pf06762.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06762", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lmf1-pf06762.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q3U3R4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06762", "PF25179" ], "protein_name": "Lipase maturation factor 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "58794f5a2029d63653cad2307fcc27858e5599e67afb5a7cbc1cf592ab053f7b", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRPDSLVMAAPEGSLRKRKVGGAEHSPASQPSLARDPADSPARLHTGTFWLTRIVLLRALAFIYFVAFLVAFNQNKALIGDRGLLPCKLYLKNVQEYFQGSTGWAAWTYAPTIMWLLDWSDMNFNLDLIALLGLGISSFVLVTGCANMILMTALWALYMSLVNVGQIWYSFGWESQLLETGFLGIFLSPLWTLSRLPKNTPTSQIVLWGFRWLIFRIMLGAGLIKVRGDKCWLDLTCMDFHYETQPVPNPIAYYLHRSPWWFHRFETLSNHFVELLVPFFLFLGRRMRILHGVLQILFQVILIISGNLSFLNWLTIVPSLACFDDAALGFLFPSGPQGLKKQVLEIQREDTQRVQPKPRDRGCLVRQVVNISLGILVAWLSVPVVINLLSSRQIMNTSFNPLRIVNTYGAFGSVTKERTEVILQGTVSPNASAPDAVWEDYEFKCKPGDPWRQPCLISPYHYRLDWLMWFAAFQTYEQNEWILHLAGKLLAGDSEALALLAVNPFEGRTPPRWIRGEHYRYKFSLPGGQHATQGKWWIRKRIGPYFPPLRLEDLKEYFKTREWPLPEPPSRHTR", "sequence_length": 574, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "58794f5a2029d63653cad2307fcc27858e5599e67afb5a7cbc1cf592ab053f7b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3U3R4.json", "taxon_id": "10090", "uniprot_accession": "Q3U3R4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/lipase-maturation-factor-1-2-c-terminal-domain-ipr057433.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057433", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lipase-maturation-factor-1-2-c-terminal-domain-ipr057433.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/lipase-maturation-factor-1-2-n-terminal-domain-ipr057434.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057434", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lipase-maturation-factor-1-2-n-terminal-domain-ipr057434.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lmf1-c-pf25179.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25179", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lmf1-c-pf25179.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lmf1-pf06762.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06762", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lmf1-pf06762.yaml" } ], "pfam_ids": [ "PF06762", "PF25179" ], "protein_name": "Lipase maturation factor 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASSRVPQQLFLQGVAAVYLFAFASLYTQIPGLYGPEGILPARRTLRPQGKGLWQQLWETPTLLWEAPRLGLDTAQGLDLLTLLGTVLALGALLLNSLRHPFVYLLLWVAYRSAYQVGQVFLYFQWDSLLLETGFLAILVAPLRGPSKHKILQGRLAGALPHEDLPFWLVRWLLFRLMFASGVVKLTSRCPTWWGLTALTYHYETQCLPTPAAWFAHHLPVWLHKLSVVATFLIEIAVPPLFFAPIRRLRLTAFYAQALLQVLIIITGNYNFFNLLTLVLTTALLDDRHLSAEPGLRCHKKMPTSWPKALLTALSLLLELTVYGLLAYGTVYYFGLEVDWQQHIILSKTTFTFHQFSQWLKTVTLPTVWLGTASLAWELLVVLWRWIQVQGWSRKFSAGIQLSVLGTATVALFLISLVPYSYVEPGTHGRLWTGAHRLFGSVEHLQLANSYGLFRRMTGVGGRPEVVLEGSYDGQHWTEIEFMYKPGNVSRPPPFLTPHQPRLDWQMWFAALGPHTHSPWFTGLVLRLLQGKEPVIRLVQSHVANYPFHERPPTYLRAQRYKYWFSKPGDQSRWWHRQWVEEFFPSVSLGDPTLETLLQQFGLKDKSPPRARSPSNGLAQTLNWVRTQLSPLEPPILLWGLFGAVVAIRVVQTLLAPRPLQSSKQTREEKRKQTSKKDSRAASEQAAANSNSRDSWAPRRKK", "sequence_length": 702, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cc1ab2b1f9240c81c37576741d65f0adb57dd9d40a253dbea257cc65da2741b2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C3X8.json", "taxon_id": "10090", "uniprot_accession": "Q8C3X8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/lipase-maturation-factor-1-2-c-terminal-domain-ipr057433.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057433", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lipase-maturation-factor-1-2-c-terminal-domain-ipr057433.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/lipase-maturation-factor-1-2-n-terminal-domain-ipr057434.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057434", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lipase-maturation-factor-1-2-n-terminal-domain-ipr057434.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lmf1-c-pf25179.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25179", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lmf1-c-pf25179.yaml" }, { "cited_uniprot_accession": "", "commit": 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"taxon_id": "3702", "uniprot_accession": "Q8W4M7", "uniprot_release": "2026_03" } ], "pfam_id": "PF06777", "short_name": "HBB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uncharacterized-protein-yjij-and-similar-proteins-of-the-major-facilit-cd06180.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd06180", "section": "canonical_examples", "url": 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"reviewed": true, "sequence": "MKGDMDLSVLPNNNHPDKFLQLDVKSLMRSSTLLQASLARFPGGNYPATQHWQNLVYSQREKTIATQRIKGFGVENPVLPESPPASMSSVMKNNPLYGDITLEEAMEERKKSPSWTIEEYDKHSVHTNLSGHLKENPNDLRFWLGDTYTPGFDTLLKKKKKRNKRSKLCHMGLILLLVASILVTIVTLSTIFS", "sequence_length": 193, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2ed1a6c92d27393b399c3f1bc9568e9b8771c6d3911a239bb7c6beada0a33cc9", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C4X7.json", "taxon_id": "10090", "uniprot_accession": "Q8C4X7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/major-intrinsically-disordered-notch2-binding-receptor-1-like-c-termin-ipr009626.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009626", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/major-intrinsically-disordered-notch2-binding-receptor-1-like-c-termin-ipr009626.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/minar1-n-terminal-helical-domain-ipr055117.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055117", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/minar1-n-terminal-helical-domain-ipr055117.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/minar1-c-pf06789.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06789", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/minar1-c-pf06789.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/minar1-n-pf22948.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22948", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/minar1-n-pf22948.yaml" } ], "pfam_ids": [ "PF06789", "PF22948" ], "protein_name": "Major intrinsically disordered Notch2-binding receptor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEANQEASLFLVKILEELDSKQNTVSYQDLCKSLCAQFDLSQLAKLRSVLFYTACLDPNFPATLFKDKMKCSVNNQQSKKIMVAADIVTIFNLIQMNGGTAKEKLPMSCHKVRKKEASFESCRSDTEVCSPTVCEPLNCELSERPFSRGYPTRQSSKCRKMDCKECPQFVPASEPNFLLGVSKEVKNRAASLDRLQALSPYSVASPQPCEMQRTYFPMNIENEPMSDQDSLPISQGIKETFISSEEPFVVQSCVQKRNIFKEDFHNLMTVSPSLVGTTNKAEEGHGEPQSQKELHKPPFFNHSFEMPYHNQYLNPVYSPIPDKRRAKHESLDDLQASTYFGPTPVMGTQDTRRCPGRSSKQTPWPAKSWSLNTEEVPDFERSFFNRNPSEEKLRYPNSGSQTPNFSGPDRHPVYLVPKDQQKVLPAGYAVKPNGLKSKEISSPVDLEKHEAVKKFKDKSISCTSGQHSSDTSSVGTQTEQHVLDPPKCKDLCTSGQAKYGDRHAMKQSDDDSEIVSDDISDIFRFLDDMSISGSTGVIQSSCYNSTGSLSQLHKSDCDSSPEHHLAKITNGVSSGKGDKCNRPENVHHSEEELKSSVCKLVLRIGEIERKLESLSGVREEISQVLGKLNKLDQKIQQPEKVNVQIDLNSLTSEAPSDDSASPRVFRAHSGSHGPKLENSPDWCCSDASGSNSESLRVKALKKSLFTRPSSRSLTEENSATESKIASISNSPRDWRTITYTNRMSLNEEEIKDAGPANNKDWHRKSKEADRQYDIPPQHRLPKQPKDGFLVEQVFSPHPYPTSLKGHMKSNPLYTDMRLTELAEVKRGQPSWTIEEYARNSGDKGKLTALDLQTQESLNPNNLEYWMEDIYTPGYDSLLKRKEAEFRRAKVCKIAALITAAACTVILVIVVPICTMKS", "sequence_length": 917, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "645de62ab92079ba48aa006402641d4aaeb6621ba97117e5951963cf55dc4179", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8K3V7.json", "taxon_id": "10090", "uniprot_accession": "Q8K3V7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/major-intrinsically-disordered-notch2-binding-receptor-1-like-c-termin-ipr009626.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009626", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/major-intrinsically-disordered-notch2-binding-receptor-1-like-c-termin-ipr009626.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/minar1-n-terminal-helical-domain-ipr055117.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055117", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/minar1-n-terminal-helical-domain-ipr055117.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/minar1-c-pf06789.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06789", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/minar1-c-pf06789.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/minar1-n-pf22948.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22948", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/minar1-n-pf22948.yaml" } ], "pfam_ids": [ "PF06789", "PF22948" ], "protein_name": "Major intrinsically disordered Notch2-binding receptor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METSQETSLFLVKILEELDSKQNTVSYQDLCKSLCARFDLSQLAKLRSVLFYTACLDPNFPATLFKDKMKCTVNNQQSKKIMVAADIVTIFNLIQMNGGAAKEKLPTGRQKVRKKEASFESCRSDTEICNAAECEPLNCELSERSFSRGYPIRQSSKCRKMDCKDCPQFVPASEPNFLLGVSKEVKNRAASLDRLQALAPYSVTSPQPCEMQRTYFPMNIENESISDQDSLPINQSIKETFISNEEPFVVQSCVQKRNIFKEDFHNLMAVSPSLVGPISKAENEHREPQSRKEPHKPPFFNHSFEMPYNSQYLNPVYSPVPDKRRAKHESLDDLQASTYFGPTPVMGTQEARRCLGKPNKQTPWPAKSWSLNTEEVPDFERSFFNRNPSEEKLHYPNASSQTPNFPAPERRPTYLVPKDQQPILPIAYAAKQNGLKSKEISSPVDLEKHEPVKKFKDKSINCTSGQLSSDTSSVGTQTEHVLEPKKCRDLCTSGQGKYSDRHTMKHSDDDSEIVSDDISDIFRFLDDMSISGSTGVIQSSCYNSTGSLSQLHKSDCDSSPEHNLTKIANGVPNSKGDKGNRPENTHHSEEELKTSVCKLVLRIGEIERKLESLSGVRDEISQVLGKLNKLDQKMQQPEKVSVQIDLNSLTSEGPSDDSASPRMFHAHSGSHGPKLENNPDWCCSDASGSNSESLRVKALKKSLFTRPSSRSLTEENSATESKIASISNSPRDWRTITYTNRVGLNEEEIKDTGPGDNKDWHRKSKEADRQYDIPPQHRLPKQPKDGFLVEQVFSPHPYPASLKAHMKSNPLYTDMRLTELAEVKRGQPSWTIEEYARNAGDKGKLTALDLQTQESLNPNNLEYWMEDIYTPGYDSLLKRKEAEFRRAKVCKIAALIAAAACTVILVIVVPICTMKS", "sequence_length": 916, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8523aad1db5821ca5c35a3308e8c24bf3ddb522f96fe8713139394987ca73a37", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UPX6.json", "taxon_id": "9606", "uniprot_accession": "Q9UPX6", "uniprot_release": "2026_03" } ], "pfam_id": "PF06789", "short_name": "MINAR1_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06797", "short_name": "DUF1229", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cyanophora paradoxa", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cgld27-like-pf06799.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06799", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cgld27-like-pf06799.yaml" } ], "pfam_ids": [ "PF06799" ], "protein_name": "Uncharacterized protein ycf36", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCTFCPIPTEQQPLNEYQILNNSVLFNWPSQKLKIYFFYLFTIYSIGFLLTFLITFYNDLFIVHPVNIFVHGIIGGNFVLILDLLRLYLGWSYICQRLLSATVSYEESGWYDGQIWVKSSEVLIQDRLIGIYQVRPVLNRLKQTLGVVILILGFTLLIQ", "sequence_length": 159, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "18715309aa269a6a1c94a32412a257ce657a8bab793940e3da19eb5441891df7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P48276.json", "taxon_id": "2762", "uniprot_accession": "P48276", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyropia yezoensis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cgld27-like-pf06799.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06799", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cgld27-like-pf06799.yaml" } ], "pfam_ids": [ "PF06799" ], "protein_name": "Uncharacterized protein ycf36", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLYNTQCPVPKEQQPVHEYTSLKNSWFFCWPTLSRRSYNKKITIALLLNCLLVSPILLSIFPITKLPLKFFFSEFITSSLMTGFILIRLYLGWSYVVKRLMSATVFYEESGWYDGQIWVKPSEILLKDRFIGLYEVFPLLNKIKNTLSFLSLMISGPVLLFFYF", "sequence_length": 165, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2ed62056de75c913fc1d10587dde00fc20a879652f8ea180f8a44f6d27554347", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1XDL3.json", "taxon_id": "2788", "uniprot_accession": "Q1XDL3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cgld27-like-pf06799.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06799", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cgld27-like-pf06799.yaml" } ], "pfam_ids": [ "PF06799" ], "protein_name": "Protein CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRLIVNYPLIPKISHRVCSNSSSKLGSYYDSSSIIKYGGISDVVGKKQELFLSVSVKAVEDKGNNGGGSMSFSGQSWDPSSEIEVPSDQRPVNEYSSLKEGMLYSWGELGPSEFFIRLGGLWLVTFTVLGVPVAAASFNPSREPLRFILAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPEVLARDRLLGSYKVKPVIKMLKQTLIGTGALLVSAFVLFVFATPVEDFFKTTLGSTENQPEVSISRTSNKFNIRKEQLLRLPVDVVTDDDLAAAAAEAADGRPVYCRDRYYRALAGGQYCKWEDLVK", "sequence_length": 327, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "03636e0f92388e3db9c8d277dca29f9c6ce7c308d36fce2e3546ff34a44f790a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FN15.json", "taxon_id": "3702", "uniprot_accession": "Q9FN15", "uniprot_release": "2026_03" } ], "pfam_id": "PF06799", "short_name": "CGLD27-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Variola virus (isolate Human/India/Ind3/1967)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1231-pf06802.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06802", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1231-pf06802.yaml" } ], "pfam_ids": [ "PF06802" ], "protein_name": "Protein B17", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRKFMQVYEYDREQYLDEFIEDRYNDSFIASPEYYSAEKYMCRYTILNHNCVNVRRCALDSKLLHDIITNCKIYNNIELVRATKFVYYLDLIKCNWVSKVGDSVLYPVIFITHTSTRNLDKVSVKTYKGVKVKKLNRCADHAIVINPFVKFKLTLPNKTSHAKVLVTFCKLRTDIMPIEAPYPGNVLVYTFPDIHKRIPGYIHINIEGCIDGIIYINSSKFSCVLKLHRSMYRIPPFPIDICSCCSQYTNDDIEIPIHDLIKDVVIFKNKEMVYYLKLNNKTIARFTYFNNIDTAITQEHKYVKIALGIVCKLMINNMHSIVGVNHSNTFVNCLLEDNV", "sequence_length": 340, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d773ef96161cb6bfd38b8792eefd0666e8f756112af1025044d1f9f9721890ea", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DOT1.json", "taxon_id": "587200", "uniprot_accession": "P0DOT1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vaccinia virus (strain Copenhagen)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1231-pf06802.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06802", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1231-pf06802.yaml" } ], "pfam_ids": [ "PF06802" ], "protein_name": "Protein B17", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRKFMQVYEYDREQYLDEFIEDRYNDSFITSPEYYSAEKYMCRYTTLNHNCVNVRRCALDSKLLHDIITNCKIYNNIELVRATKFVYYLDLIKCNWVSKVGDSVLYPVIFITHTSTRNLDKVSVKTYKGVKVKKLNRCADHAIVINPFVKFKLTLPNKTSHAKVLVTFCKLRTDITPVEAPLPGNVLVYTFPDINKRIPGYIHVNIEGCIDGMIYINSSKFACVLKLHRSMYRIPPFPIDICSCCSQYTNDDIEIPIHDLIKDVAIFKNKETVYYLKLNNKTIARFTYFNNIDTAITQEHEYVKIALGIVCKLMINNMHSIVGVNHSNTFVNCLLEDNV", "sequence_length": 340, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c9e2174efbb6642c9b3a297e1b4eada4cec65e84b9d620826f3c6cf692a7726c", "sequence_version": 1, "source_url": 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"canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/acmnpv-orf17-pf06856.yaml" } ], "pfam_ids": [ "PF06856" ], "protein_name": "Putative early 22.7 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEITVTLVPINLRGAEEPERNQRFRLKPLCAAAEVCLAVKCRSPFAKFKVLISVTNFDNKHLQATVCSRHAAVCVVNAPGQREVVFDGFAKPDDEGATVPLVVGPLFAARQAGRCVRAAVDAIQRQQTVLKVFINEAYLQSAWGAVRGLFFSDNNHESDLTSNVGKFISVDPTDVGARGANSSKWVPAINYVTGRQLLTILFIFKFI", "sequence_length": 207, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dda6fd5da3a7520c9c9bd9c29ea2d85cb93daed6bb5dd9219cbfcb7801b79c81", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10277.json", "taxon_id": "262177", "uniprot_accession": "O10277", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/acmnpv-orf17-pf06856.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06856", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/acmnpv-orf17-pf06856.yaml" } ], "pfam_ids": [ "PF06856" ], "protein_name": "Early 18.5 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLKVILTPINLKGEEEPNCVERITIMPCILIDTEICLNVRCRSPFAKFKVLIIVDGFDSAYIQATFCSISDSVTIVNKSNEKHVTFDGFVRPDDEGTTMPYVIGPLYSVDAAVADRKVKDVVDSIQNQQTMLKVFINEANVYNKWNMLKGLIYNNNNESVLVK", "sequence_length": 164, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cbc6cc5d7bf875a701ba0f0ef44e45ed5e343e434b731a3c4cbd576c4223bd18", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P12826.json", "taxon_id": "46015", "uniprot_accession": "P12826", "uniprot_release": "2026_03" } ], "pfam_id": "PF06856", "short_name": "AcMNPV_Orf17", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/utp25-c-terminal-domain-ipr053939.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/utp25-c-terminal-domain-ipr053939.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/utp25-ntp-hydrolase-like-domain-ipr053940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/utp25-ntp-hydrolase-like-domain-ipr053940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/utp25-c-pf06862.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06862", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/utp25-c-pf06862.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/utp25-ntpase-like-pf22916.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22916", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/utp25-ntpase-like-pf22916.yaml" } ], "pfam_ids": [ "PF06862", "PF22916" ], "protein_name": "U3 small nucleolar RNA-associated protein 25", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDSSVREKNDNFRGYRKRGRQELRKIKRSSARTEGGSTETLEDVAEDIDHRSDEDEVSDVDSGDDFDIEDEEGKKEKVYDALLTILKSEHPEPKRRRREADESNKAPAEVGEDEHENTEHGPVDDQLEIENGLLGNHEDDNDDDSSGDEKDIDSEDEQDPFESHFNQVPEKFVDKLSNAFKTKSVKYKSVKGSLSDSESYIYAKPVVIGEEALVESPYRSSSIYSYFLKQRLKVQNGLLDKKTDPLTALQKKLVDPMFQYKDILYEYDSYEKDEDEYRDLYALHVLNHIYKTRDRILKNNQRLQDNPDTEHLDQGFTRPKVLIVVPTREVAYRVVDKIISKSGIDQVDKKGKFYDQFRDDSLPPKSKPKSFQHIFRGNTNDFFVVGLKFTRKAIKLYSNFYQSDIIVCSPLGIQMILENTDKKKRQDDFLSSIELMVIDQLHSIEYQNISHIFTIFDHLNKIPDQQHEADFSRIRMWYINEQAKLFRQTMVFTKYISPAANSLINGRCRNMAGRWKNHKVIGSENSSIGQSGLKIRQIFQRFDIIGNSIIEEPDYRFKFFTSVIIPGIVKSTGYEDGILIYIPDYTDFIRIRNYMKEKTTILFGDINEYSSQRQLNANRSLFQQGRLKVMLYTERLHHYRRYEIKGVKSVVFYKPPNNPEFYNEVVRFIGKNAFLGNTDLNISTVRCIYSKLDGLSLERIVGTKRAAVLSHAQKEIYEFK", "sequence_length": 721, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f6d4686987d4928170fd95b1aab8952194f9e27be3283551300c3b3bff334400", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40498.json", "taxon_id": "559292", "uniprot_accession": "P40498", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/utp25-c-terminal-domain-ipr053939.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/utp25-c-terminal-domain-ipr053939.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/utp25-ntp-hydrolase-like-domain-ipr053940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/utp25-ntp-hydrolase-like-domain-ipr053940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/utp25-c-pf06862.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06862", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/utp25-c-pf06862.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/utp25-ntpase-like-pf22916.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22916", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/utp25-ntpase-like-pf22916.yaml" } ], "pfam_ids": [ "PF06862", "PF22916" ], "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKRGSRSQSQLLNTLTKKQKKHLRDFGEEHPFYDRVSRKEAKPQICQLSESSDSSDSESDSESEPQQVSGYHRLLATLKNVSEEEEEDEEEEEEEDSIVDDAEMNDEDGGSDVSVEEEMAAESTESPENVALSADPEGKEDGEEPPGTSQTSPEEFTDAKHESLFSLETNFLEEESGDNSSLKASQDPFLQHVNKELKEKAIQAVATNPKTTHELKWPILGQLFFSSKFQKLETFKPPKDIDLKSLHLQKPLESTWTKTNSQFLSGPQKSSSPFTPLQKELFLIMNSYRDLFYPERTALKNGEEIRHVYCLHVINHILKANAQVLGNNSRRRSQKFGVGDDDDFRDQGLTRPKVLIVVPFREAALRVVQLFISLLEGDSKKKIIVSNKKRFQGEYGSDPEERPPNLKRPEDYEAVFVGNIDDHFRIGVAILQRSIRLYAPFYSSDILIASPLGLRTIIGGEGEKKRDFDFLSSIELLIIDQADIYLMQNWEHVLHLMNHMNLLPLDSHGVDFSRVRMWSLNNWSKYYRQTLLFGALQDAQINSVFNKYCVNMQGQVAVRNVPMTGSISHVLVQLPHVFQRMEAENLASVIDARFNFFVNKILPQYRDAVMSHTLIYIPSYFDFVRLRNYFKKEELNFTHICEYTQKSGVSRARHFFLQGEKQFLLFTERFHFYKRYTIKGIRNLIFYELPTYPHFYSEICNMLRATNRGEEATWTCTVLYSKYDAQRLAAVVGVERAAQMLQSNKNVHLFITGEK", "sequence_length": 756, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a244953ac5e56810c78a849bdc3987713ae3ef050f773ff77e8f4b1d3ef7f2e6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q68CQ4.json", "taxon_id": "9606", "uniprot_accession": "Q68CQ4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/utp25-c-terminal-domain-ipr053939.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/utp25-c-terminal-domain-ipr053939.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/utp25-ntp-hydrolase-like-domain-ipr053940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/utp25-ntp-hydrolase-like-domain-ipr053940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/utp25-c-pf06862.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06862", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/utp25-c-pf06862.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/utp25-ntpase-like-pf22916.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22916", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/utp25-ntpase-like-pf22916.yaml" } ], "pfam_ids": [ "PF06862", "PF22916" ], "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKRRNRGRSQMLSTMTKKQKKHLRDFGEEHPFYDRVSKKEAKPQICQLPESSDSSHSESESESEQEHVSGYHRLLATLKNVSEEEEEEEEEEEEEEEEEEEEEEEEEDDSAVGDAEMNEEAGSEDGSVGEAAVSEAAEEAAETQEHMSLADNSKEKDGEEPPGVSQKSSEEFTDVKHESLFSLETNFLEEDSGGSCSQRPSQDPFQQHVNKELKEKEIQAAASSPPATQQLKWPVLGHLVFSSKFQKTETFKPPKDIDLKLLHLQKPLESTWAKTNSQFLSGPQKSNSSFTPLQKELFLIMNSYRDLFYPERTALKNGEEVRHVYCLHAINHVLKANAQVLANNSRRRSQKLGVGEDDDFRDQGLTRPKVLIVVPFREAALRVVQLFISLLEGDSKKKIIVSNKKRFQGEYGSDPEERPPNLKRPEDYEAVFVGNIDDHFRIGVAILQRSIRLYAPFYSSDILIASPLGLRTIIGGEGEKKRDFDFLSSVELLIIDQADIYLMQNWEHVLHLMNHMNLLPLDSHGVDFSRVRMWSLNNWSKYYRQTLLFGALQDAQINSVFNKHCINAQGQVAVRNVPMTGSISHVLVQLPHVFQRMEAQDLSSVIDARFHFFINKILPQYRDAVMSHTLIYVPSYFDFVRLRNYFKKEELNFTHICEYTQKSGISRARHFFLQGEKQFLLLTERFHFYKRYTIKGIRNLIFYELPTYPHFYSEVCNMLRATSRGEEATWTCTVLYSKYDAQRLAAVVGVERAAQMLQSPKNVHLFVTGEK", "sequence_length": 772, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6d332896894ba4fa8706fb54483ed41d9405ea7d561c8128016b06f90c35b5ea", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BTT6.json", "taxon_id": "10090", "uniprot_accession": "Q8BTT6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/utp25-c-terminal-domain-ipr053939.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/utp25-c-terminal-domain-ipr053939.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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true, "example_count": 0, "examples": [], "pfam_id": "PF06897", "short_name": "DUF1269", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06900", "short_name": "DUF1270", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/divergent-4fe-4s-mono-cluster-ipr010693.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010693", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/divergent-4fe-4s-mono-cluster-ipr010693.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fer4-19-pf06902.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06902", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fer4-19-pf06902.yaml" } ], "pfam_ids": [ "PF06902" ], "protein_name": "Uncharacterized protein YjdI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDQALLDGGYRCYTGEKIDVYFNTAICQHSGNCVRGNGKLFNLKRKPWIMPDEVDVATVVKVIDTCPSGALKYRHK", "sequence_length": 76, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e184c31368311e106f729377423be58d9bb5627436b1a74a82c0d8f02e79bb49", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AF59.json", "taxon_id": "83333", "uniprot_accession": "P0AF59", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fer4-19-pf06902.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06902", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fer4-19-pf06902.yaml" } ], "pfam_ids": [ "PF06902" ], "protein_name": "Uncharacterized protein YjdI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDQALLDGGYRCYTGEKIDVYFNTAICQHSGNCVRGNGKLFNLKRKPWIMPDEVDVATVVKVIDTCPSGALKYRHK", "sequence_length": 76, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e184c31368311e106f729377423be58d9bb5627436b1a74a82c0d8f02e79bb49", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AF60.json", "taxon_id": "83334", "uniprot_accession": "P0AF60", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces griseolus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fer4-19-pf06902.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06902", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fer4-19-pf06902.yaml" } ], "pfam_ids": [ "PF06902" ], "protein_name": "Ferredoxin-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTMRVSADRTVCVGAGLCALTAPGVFDQDDDGIVTVLTAEPAADDDRRTAREAGHLCPSGAVRVVEDTE", "sequence_length": 69, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dc6822d8a3aadb6f4dd5b5c8bf725485371fb00386aaba97d520dab611736544", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P18324.json", "taxon_id": "1909", "uniprot_accession": "P18324", "uniprot_release": "2026_03" } ], "pfam_id": "PF06902", "short_name": "Fer4_19", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhizobium meliloti (strain 1021)", "origins": [ { 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"https://rest.uniprot.org/uniprotkb/P42878.json", "taxon_id": "266834", "uniprot_accession": "P42878", "uniprot_release": "2026_03" } ], "pfam_id": "PF06906", "short_name": "DUF1272", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ypsa-pf06908.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06908", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ypsa-pf06908.yaml" } ], "pfam_ids": [ 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"data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010181.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF010181", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010181.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ypsa-pf06908.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06908", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ypsa-pf06908.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P50838", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06908" ], "protein_name": "UPF0398 protein YpsA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e65125f85eda3a38052dbe28837db0e397d616cb7defd90180738e5e9da0926e", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKVLAITGYKPFELGIFKQDDKALYYIKKAIKNRLIAFLDEGLEWILISGQLGVELWAAEAAYDLQEEYPDLKVAVITPFYEQEKNWKEPNKEQYEAVLAQADYEASLTHRPYESPLQFKQKNQFFIDKSDGLLLLYDPEKEGSPKYMLGTAEKRREQDGYPIYFITMDDLRVTVEEDSY", "sequence_length": 180, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e65125f85eda3a38052dbe28837db0e397d616cb7defd90180738e5e9da0926e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P50838.json", "taxon_id": "224308", "uniprot_accession": "P50838", "uniprot_release": "2026_03" } ], "pfam_id": "PF06908", "short_name": "YpsA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhizobium meliloti (strain 1021)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1275-pf06912.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06912", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1275-pf06912.yaml" } ], "pfam_ids": [ "PF06912" ], "protein_name": "UPF0700 transmembrane protein RA0705", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVQRRRRIIKRRRSSVGLALVAAISFLAGMTDAIGLMSIGDFVSFMSGNTTRASVALVQGDAAQGLLLIGGLVSFVLGNAAGVMISIRFRPQAALLFVSALLACAALQEGQPELRFVSLIFAMGAVNASVEQIEGLPVGLTYVTGALSRFGRGLGRWAMGVRNTQWIIQIVPWLGMFAGAIMGAVLVREAGDLALWVPSLAALLLTAAAFQIPRRWQSRFIQSR", "sequence_length": 225, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "59feec1acf0b58e4c07669e78fc0cddc9621b269dc87f330cec0ba859cd35af4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31185.json", "taxon_id": "266834", "uniprot_accession": "O31185", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1275-pf06912.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06912", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1275-pf06912.yaml" } ], "pfam_ids": [ "PF06912" ], "protein_name": "UPF0700 transmembrane protein YoaK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAAAYRNTLLSLLCLTAGIVDVIGYLSLGHVFTANMTGNIVLLGLAIGKSIQVTVFNSLTALIGFICGVIIATLMVGKAENTLWPSAVTKALALEAFILFVFACLSFYRAFVPVHILIILMSISMGIQTTAAKKLGIAGISSTVLTGTLASLLEDISGRLFFKKQKKTFLRDTVLRALAIILYCVGAIIVALAEPDFYHFIIWVPIVLIFGIMMTAKLKLSGEK", "sequence_length": 225, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "52da367da0c9d51c1f64da974636b844dbb2cd338759ee191cbb4524a4d9da49", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34343.json", "taxon_id": "224308", "uniprot_accession": "O34343", "uniprot_release": "2026_03" } ], "pfam_id": "PF06912", "short_name": "DUF1275", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/n-terminal-peptidyl-methionine-acetylation-go0017196.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0017196", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/n-terminal-peptidyl-methionine-acetylation-go0017196.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-fam210a-b-like-domain-ipr009688.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009688", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-fam210a-b-like-domain-ipr009688.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P37293", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06916" ], "protein_name": "Putative N-terminal acetyltransferase 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": 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"canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1287-pf06940.yaml" } ], "pfam_ids": [ "PF06940" ], "protein_name": "Uncharacterized protein YijF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKASLALLSLLTAFTSHSLKSPAVPPTVVQIQANTNLAIADGARQQIGSTLFYDPAYVQLTYPGGDVPQERGVCSDVVIRALRSQKVDLQKLVHEDMAKNFAEYPQKWKLKRPDSNIDHRRVPNLETWFSRHDKTRPTSKNPSDYQAGDIVSWRLDNGLAHIGVVSDGFARDGTPLVIHNIGAGAQEEDVLFNWRMVGHYRYFVK", "sequence_length": 205, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3d882536af27850fd53b9e43c11eec9bf0cfe7965d167e602acb1e1a180686d4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32668.json", "taxon_id": "83333", "uniprot_accession": "P32668", "uniprot_release": "2026_03" } ], "pfam_id": "PF06940", "short_name": "DUF1287", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, 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"pfam_ids": [ "PF06949" ], "protein_name": "UPF0473 protein YrzB", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "849ccf5cbe6bef580fbb2b8a1be59f00b8f89d672aeb9fab9b52acb3ec002342", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEHGEKNITIVDDQGNEQLCEVLFTFENEEFGKSYVLYYPIESKDDEEVEILASSFTPNEDGENGELFPIETDEEWDMIEETLNTFLADEDEE", "sequence_length": 93, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "849ccf5cbe6bef580fbb2b8a1be59f00b8f89d672aeb9fab9b52acb3ec002342", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34828.json", "taxon_id": "224308", "uniprot_accession": "O34828", "uniprot_release": "2026_03" } ], "pfam_id": "PF06949", "short_name": "DUF1292", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06950", "short_name": "DUF1293", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1294-pf06961.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06961", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1294-pf06961.yaml" } ], "pfam_ids": [ "PF06961" ], "protein_name": "Uncharacterized protein YsdA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIIAAYLVLINLCGFWVMGIDKRKAQQHKWRISEDRLWLIAIVFGALGVWLGMQTFRHKTKHASFKYGVPLLLVIEAILIAIYYSPFDL", "sequence_length": 89, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "23845c5f84e8cf9de7b905f6c50dcfd5ef73bda6ab06d61e015d8c3775b0e6a8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P94519.json", "taxon_id": "224308", "uniprot_accession": "P94519", "uniprot_release": "2026_03" } ], "pfam_id": "PF06961", "short_name": "DUF1294", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Ustilaginoidea virens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1295-pf06966.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06966", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1295-pf06966.yaml" } ], "pfam_ids": [ "PF06966" ], "protein_name": "Probable O-methyltransferase ustE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADAKAVAKAELKSKDFVPRGNKSSSPLNTTLYLGLRALDCYIQYLILSRATGSFIIKFFGGSIIPHGPPVEAGFMHIEKLGLSGYRLLLLFMDILAAAKHFWFVLTVAEEAWTLTGAIVVGLDNIFFDTLNNLLFLCAATSAASSKAGGETLANPYLATGFIIFAVGLVTECVCEIDRKVFKKNPMNKGKPYTGGLFSLVRHPNYTAFTIWRSGLALASGGMIYGMSIAMFFMWDFSNRAVPALDEYCTKRVSYGPRDSTSTNWSRIWLLMTSSLVRRYVGRV", "sequence_length": 284, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "30f2398d74b38abf1a4c9c7699f8efe74d33b42aa545bc25823e7a55c4d7904f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A1B5L6A5.json", "taxon_id": "1159556", "uniprot_accession": "A0A1B5L6A5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1295-pf06966.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06966", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1295-pf06966.yaml" } ], "pfam_ids": [ "PF06966" ], "protein_name": "Uncharacterized protein C594.04c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLASTMPIIYSASDAAKWKVAVSPYLYQLSNLKLLFTGKLNFADFYYNTNPFVVGLLLSFILGNVLWGVSVWTKNTSQVDRLWPILPTAFSLHFLFYGLGYNIASRRLMIMAFLQTLWSARLTYNYYRKGGYNRGAEDYRWVRVRQIMPKWIYPLFHYFYIHIFQVLHLYLLASPTYIAMLAGNERAFGAWDWIALELFMFMFVLEMLADQQQWDYYEARNHYNVDKTVPPRFKYDLLSLGRGFNATGLFRWSRHPNFLAEQLIWLSFYLFGAIASESLLNWTIFAWLGLVGVFQGSTRLTEKMSCEKYPLYRVYQDKVGRFFPRLDGSHWDIVDDDASLKED", "sequence_length": 344, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "753a52bb40cf8c7b561976ef514758a895fda605793571925d1bb2edd6b25551", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O74507.json", "taxon_id": "284812", "uniprot_accession": "O74507", "uniprot_release": "2026_03" } ], "pfam_id": "PF06966", "short_name": "DUF1295", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gbf-interacting-protein-1-n-terminal-ipr009719.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009719", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gbf-interacting-protein-1-n-terminal-ipr009719.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gip1-n-pf06972.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06972", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gip1-n-pf06972.yaml" } ], "pfam_ids": [ "PF06972" ], "protein_name": "GBF-interacting protein 1-like", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSSDGGSSRVSIPYHLRKTLQKIREYTGKQHSDEDIFAVYKDSFNDPHETAQKLLFLDTFHEVRSKREKKKEPIVPVTQPSGRGGRRNFASSNSYQGSGRNASFKRENGANHVTRGSRTAQPATNKASNITVPNETKVSGPASIPSEVSNHKAQDDPSLISASRCSSKSDQAIEIETASKQGKNQSLPKPDVSEQSHVTFPFHLQVAKGLQNGLTFGSFDSNFVKEVSSSNGASGGYDSNFESSHGTGDDERESSPTTNGITGVASAREETSTVSEDKDYGISNSATGAEPVVHSDHIVPPVEEVPKEEALSNTETHQIAYGQEAPLSVFGLVPSLSAIGQPVNTEAAETQPGNSNSPPISLVSYPPDQSSIAAATQQTNFLRQQYPPNFFPYGYYSPYYMPPPYIHQFLSPNGIPQQSYFPQGAALTAPSHAKPVDNTENPPTTNPYLHTSPMVASSIPSTTTLNSIHSEEKASHLTESAAAWIGQGFGNLQVNPMYNLAYQGQPLGFPVVQAGHGGLMGMHQPTQPMAAASTTYQTLPPPPHTTTAMGEPIGHPHIAYQQPQAALTNWVNNY", "sequence_length": 575, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c00cbcd8f3ba4f7865d1a1655dbec1f00965942f69910830c21261e61d8ac4f7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4FVR1.json", "taxon_id": "3702", "uniprot_accession": "A4FVR1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gip1-n-pf06972.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/uba-like-superfamily-ipr009060.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009060", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/uba-like-superfamily-ipr009060.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8VZS6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06972" ], "protein_name": "GBF-interacting protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "69bf98d35ff3668a9a47a2aa33a3382190a702f7a635fd62c3fba3327c14d18f", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSRISGDGGSRVSIPADLLQTIQNIREVTGKQHSDEDIFSVFKECFSDPHETTQKLLYLDTFHEVRSKRERKKENLVPNTQGRGRTGRKNFASSYTDASNGRSAAFKKQSGANHIIGGSGTASSAPNNARNDTKPSSIMAPNPISLPSGISNQKIQDAIISPVDKVDTEEQPLSKATSSSKDVVEPDKSKESSVSVAVSDSVVENDTQYAVVETFQIPQQSERVIKSEVAASKCKNESLLKSDVGERPHVTFPVHIQVAKMLENGLTFGSFDSNFVREASSDKFTIGCDDSNIESSHGTAASARKDISTFSQDKNHEISNSAAQNELTLQPDQTVLPEEGSEGDKVKNEVLPITDTHQAAKCDAPPISYPDQYSLAAAQQAMHLYRQQYSLNYFPYGPYFPPYYMPQPYIHQYLSPNGFQQQSYLPPGDDAPAPPGAELPLTHIKPGSDIGNSPPTTIPFSYTSYAFNHIPSAATINATHKEEKKENMYTTGPLSLANLQASPMYNLSLQGQPIAFPTMQAGIRGLYQQTQPILAPLSISARTEPIGPSHVTNQQPQAARTNLGNNY", "sequence_length": 567, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "69bf98d35ff3668a9a47a2aa33a3382190a702f7a635fd62c3fba3327c14d18f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VZS6.json", "taxon_id": "3702", "uniprot_accession": "Q8VZS6", "uniprot_release": "2026_03" } ], "pfam_id": "PF06972", "short_name": "GIP1_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanothrix thermoacetophila (strain DSM 6194 / JCM 14653 / NBRC 101360 / PT)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1297-pf06973.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06973", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1297-pf06973.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1246-pf06849.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1246-pf06849.yaml" } ], "pfam_ids": [ "PF06849", "PF06973" ], "protein_name": "5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISKEEILEILNGYDLKNITIATVCSHSSLQIFHGAKQEGFRTLGICIGPPPRFYDAFPLAKPDAFISLDSYKAMLDESDRLIDENAIIIPHGSMVEYLGIQNFEALPVPTFGNRRCLAWESDREMEREWLLRAGVNVPMRFENAELIDRPVIVKYHGAKGGKGFFIAKNKEEFQSKIQQGQKYTIQEFILGTRYYIHFFYSPIREKGYRLRKGTLDMLGIDRRVESNADEIFRIGSVNELEAAGIYPSFVVTGNLPLVLRESLLPKVFDLGERVVETSIELFGGMVGPFSLETIVTDDLDFKVFEISARIVAGTNLFISGSPYSDLIEKGLSTGRRIAQEIALARSMGALGEVIS", "sequence_length": 356, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "22eef2e42c6115747fb5dbffa06c65f1668ea912b5ac925f61fdedf55039d313", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0B5K9.json", "taxon_id": "349307", "uniprot_accession": "A0B5K9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cenarchaeum symbiosum (strain A)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1297-pf06973.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06973", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1297-pf06973.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ws-dgat-cat-pf03007.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03007", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ws-dgat-cat-pf03007.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/chloramphenicol-acetyltransferase-like-domain-superfamily-ipr023213.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/chloramphenicol-acetyltransferase-like-domain-superfamily-ipr023213.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/chloramphenicol-acetyltransferase-like-domain-3-30-559-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.559.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/chloramphenicol-acetyltransferase-like-domain-3-30-559-10.yaml" } ], "pfam_ids": [ "PF03007", "PF06974" ], "protein_name": "Wax ester synthase/diacylglycerol acyltransferase 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEIKTRRDTSETSVRKDDEEEVEEEQPLSPAARVFHAPEFNCYVISVIGIKKKIDPDVIIEGLKQTLIRHPRFSSKMVSTSVGNKKRQTQSWVRTNVVVTDHVIVSDIQTQNIENGNADAFLETYVSNLTTVPLDISKPLWQLHLLDLKTSDAENVAVLKFHHSLGDGMSLMALVLACMRKTSNPDELPSLPNQNRSSSRSSRLMAGSRGDSRFLWLVMVIWSAIMLVLNTVCDALEFIATTMFLKDTETPIKGDFRFSKSKRMCLVHRTVSLDDIKLIKNTMKMTVNDVVLGVSQAGLSQYLDRRYGEKKKKVGEDQDSKRKATDMPKRIRLRSALLVNLRPNTGIQDLADMMAKGSTCRWGNWIGYIVFPFSIGLRDDPLQHLRRAKRIIDRKKNSLEAALTFVAGKFILKTFGVQVAAKIINRALSNTTMSFSNLIGPIEEISFYGHPITYMAPSVYGHPHALTMHFQSYMNQMTISLTVDPTVISDPHRLLDDWEKSLQSIKAAVQERDSRSLD", "sequence_length": 518, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9899043f9ad97f4be4dce2277c84a91e6f4bc4076d56e04225eedd52ea8877bc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M3B1.json", "taxon_id": "3702", "uniprot_accession": "Q9M3B1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { 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"data/traits/sequence/domain/pfam/ws-dgat-c-pf06974.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06974", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ws-dgat-c-pf06974.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ws-dgat-cat-pf03007.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03007", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ws-dgat-cat-pf03007.yaml" } ], "pfam_ids": [ "PF03007", "PF06974" ], "protein_name": "Wax ester synthase/diacylglycerol acyltransferase 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEIETRPHISGDEKEEEQPLSPAARLFHAPEFNCNIISVIGFKSKLDPCVFIRGFKESFIRHPRFSSKLVTDENGQNQRWVRTNVVVEDHFIVPKIKPQNIENSNAFLEDYVSDLMKIPLDTSRPLWELHLLDLKTSDAENVAVLKIHHSVGDGMSIMSLVLACMRKTSNPDELPSLPYQYRSSSRSSLLTTGSRSDSRLLWLVKVIWTAVILGLNTVCDALEFIVTTLFVKDTETPIKGDFLSTKSKQLRLVHRTVSLDDIKLTKNAMNMTINDVVLGVTQAGLSRYLARRYGEEETKNRKQKKLPKRIRLRSALLVNLRPTTGIQDLADMMEKGSKCRWGNWFGYVVFPFSIALRDDPLEHLEIAQKTISRKKNSYGAMLTYIFCRIIVKLLGIKVAASIINRMVSNTTMTFSNMVGPVEEVSFYGHPITYFASSAYGHPHALTIHCQSYMNKMTITLIVDPTVISDPHRLCDDWEESLRSIKAAVTKRESLRLWDYLRILHNRVAWLLYQIAGLLYRML", "sequence_length": 522, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fe3bf90fa952d26f211faa6283666f7445de5a5aa329ac6f5044dcf5427426a5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M3B3.json", "taxon_id": "3702", "uniprot_accession": "Q9M3B3", "uniprot_release": "2026_03" } ], "pfam_id": "PF06974", "short_name": "WS_DGAT_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06975", "short_name": "DUF1299", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem70-pf06979.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem70-pf06979.yaml" } ], "pfam_ids": [ "PF06979" ], "protein_name": "Transmembrane protein 223", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAPWRRWPTGLLAVLRPLLTCRPLQGTTLQRDVLLFEHDRGRFFTILGLFCAGQGVFWASMAVAAVSRPPVPVQPLDAEVPNRGPFDLRSALWRYGLAVGCGAIGALVLGAGLLFSLRSVRSVVLRAGGQQVTLTTHAPFGLGAHFTVPLKQVSCMAHRGEVPAMLPLKVKGRRFYFLLDKTGHFPNTKLFDNTVGAYRSL", "sequence_length": 202, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "be50af286e9cae6af607d9e9a0db63d955ca2033d6afb6a6c106f6470efe53f7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0PJW6.json", "taxon_id": "9606", "uniprot_accession": "A0PJW6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem70-pf06979.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem70-pf06979.yaml" } ], "pfam_ids": [ "PF06979" ], "protein_name": "Transmembrane protein 186", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLELLCRVSPARLPWRSCMSLAIQPAQRRRFATEAAGKRTETEKSAFTEWRTVYSMPGIRLVAALSRLKVYQAVITAAGTPIVFALGSAGQLSTDALAIYAAIGVTGLITLTLASYASSNLVGFIYVNEEQDLLKLAYVDFWGRRQETLIETEDLLPSWEQGSPSRLRFVSPICLRSDSKRRYKLLNRFGHVSDRQLFEGLFGN", "sequence_length": 204, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "135da076307ec805504da2cd62ebabcb868430d55615ea69f328467fe9a99e28", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q059A4.json", "taxon_id": "7227", "uniprot_accession": "Q059A4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { 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"canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem70-pf06979.yaml" } ], "pfam_ids": [ "PF06979" ], "protein_name": "Transmembrane protein 70, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLGLGGRWAAGLWPGRTRTTWCVAAALRGSGIAFWRAASLAEPERLRSGGHLALAESCGPPGRAQIPVCWEQCVRCFHTQVDKPENGRLIYTGNLARTIFGVKCFSYSTSVVSLAFLPYLLSQNNMMFGSLPLQVLFYGVMGSFTVITPTLLHLLTKGYVIRLYHEATSDTYRAVTYNVMLSETSTVFHQDDVTIPESAHIFTSFYAKTKSLLVNPALFLNPEDYNHLMGYDKPFTFDMEEVDEKKLHEGEK", "sequence_length": 253, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d05b53620d85e4d21452d136b1bb9a6584051203837dea23a2d97469fe713212", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q921N7.json", "taxon_id": "10090", "uniprot_accession": "Q921N7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila 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"sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4b76784af745ab190f2ddbe2cc4c30c79891aa8536fdc0f955a31adec030a1aa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q95SS8.json", "taxon_id": "7227", "uniprot_accession": "Q95SS8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem70-pf06979.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem70-pf06979.yaml" } ], "pfam_ids": [ "PF06979" ], "protein_name": "Transmembrane protein 186", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAALLRAVRRFRGKAVWERPLHGLWCCSGQEDPKRWVGSSSPISKEKLPNAETEKFWMFYRFDAIRTFGFLSRLKLAQTALTVVALPPGYYLYSQGLLTLNTVCLMSGISGFALTMLCWMSYFLRRLVGILYLNESGTMLRVAHLNFWGWRQDTYCPMADVIPLTETKDRPQEMFVRIQRYSGKQTFYVTLRYGRILDRERFTQVFGVHQMLK", "sequence_length": 213, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "557ec79e11646c423bb1dedb8a2b0a78ae17afda5d7d7b9e555c5e8ad2a362b1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96B77.json", "taxon_id": "9606", "uniprot_accession": "Q96B77", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/mitochondrial-proton-transporting-atp-synthase-complex-binding-go0140260.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140260", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/mitochondrial-proton-transporting-atp-synthase-complex-binding-go0140260.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mitochondrial-proton-transporting-atp-synthase-complex-assembly-go0033615.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0033615", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitochondrial-proton-transporting-atp-synthase-complex-assembly-go0033615.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem70-pf06979.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem70-pf06979.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9BUB7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06979" ], "protein_name": "Transmembrane protein 70, mitochondrial", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b586c460eb4966b82481be136afa531c1cbf0127b9f92460dbbf60f058a8bfee", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLFLALGSPWAVELPLCGRRTALCAAAALRGPRASVSRASSSSGPSGPVAGWSTGPSGAARLLRRPGRAQIPVYWEGYVRFLNTPSDKSEDGRLIYTGNMARAVFGVKCFSYSTSLIGLTFLPYIFTQNNAISESVPLPIQIIFYGIMGSFTVITPVLLHFITKGYVIRLYHEATTDTYKAITYNAMLAETSTVFHQNDVKIPDAKHVFTTFYAKTKSLLVNPVLFPNREDYIHLMGYDKEEFILYMEETSEEKRHKDDK", "sequence_length": 260, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b586c460eb4966b82481be136afa531c1cbf0127b9f92460dbbf60f058a8bfee", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BUB7.json", "taxon_id": "9606", "uniprot_accession": "Q9BUB7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem70-pf06979.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem70-pf06979.yaml" } ], "pfam_ids": [ "PF06979" ], "protein_name": "Transmembrane protein 223", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVASVPLRNVSHLLSVLRSQNVPRYLQNGVPRDVLLFRHERGRFFAILGLFCAGQGIFWTSLAVAALSRPLSRVPAEAPNRSYQDLRSALWRYGLAVGCGTMGVLVLGAGLLYSLRSVRSVMLLAGGQQVTLTTYAPFGLGTCFTVPLNQISCMAHRGEVPAMLPLKVKGRRFYFLLDKAGHFPNTQLFDNTVGAYRSL", "sequence_length": 199, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0e474adcada850b344ce4df7091aee22c11cbd7be4e6677ee959e5c2824c7370", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CQE2.json", "taxon_id": "10090", "uniprot_accession": "Q9CQE2", "uniprot_release": "2026_03" } ], "pfam_id": "PF06979", "short_name": "TMEM70", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06980", "short_name": "DUF1302", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lactococcus lactis subsp. lactis (strain IL1403)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1304-pf06993.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06993", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1304-pf06993.yaml" } ], "pfam_ids": [ "PF06993" ], "protein_name": "Uncharacterized protein YpaA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTILTIILSLLVALEFFYIMYLETFATSSKTTSRVFNMGKEELERSSVQTLFKNQGIYNGLIGLGLIYAIFFSSAQLEIVRLLLIYIILVALYGSLTSNKKIILTQGGLAILALISSFF", "sequence_length": 119, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b82a8b0be3120d9e87bca609594e35fd2d14e1c09c0b855f6a1d9decc386a27", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q02009.json", "taxon_id": "272623", "uniprot_accession": "Q02009", "uniprot_release": "2026_03" } ], "pfam_id": "PF06993", "short_name": "DUF1304", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF06996", "short_name": "T6SS_TssG", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1307-pf06998.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06998", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1307-pf06998.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/yehr-like-superfamily-ipr036699.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036699", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yehr-like-superfamily-ipr036699.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/yehr-like-3-30-1830-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.1830.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yehr-like-3-30-1830-10.yaml" } ], "pfam_ids": [ "PF06998" ], "protein_name": "Uncharacterized lipoprotein YehR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK", "sequence_length": 153, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9d3141f97f9b55094cfdc44823d2321852455be4ce05faf97ed28e38af22d88", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P33354.json", "taxon_id": "83333", "uniprot_accession": "P33354", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1307-pf06998.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06998", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1307-pf06998.yaml" } ], "pfam_ids": [ "PF06998" ], "protein_name": "Uncharacterized lipoprotein Lmo0207", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKMLKKGTAVLFVMIMAVMLVACGDKEETKTYTLSQNGVDSKLTYTYKGDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKAIETLEVDYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQGYKEVSK", "sequence_length": 153, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "323b8918cdc89a700117959a6c1e99100c4c34d8901b9fbe4999d1ea34bf3730", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P33385.json", "taxon_id": "169963", "uniprot_accession": "P33385", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1307-pf06998.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF06998", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1307-pf06998.yaml" } ], "pfam_ids": [ "PF06998" ], "protein_name": "Uncharacterized lipoprotein Lin0239", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLLKKGTTVLFVMIMAVMLVACGDKEESKTFSLSQNGVDSKLTYTYKGDKVTKQTAENTMLYTSMGIKTKEEAEKMLKETSEKFQNIEGLKESIEYKDDKAIETLEVDYTKISSEDLKKLPGMASTGDVSKGISMKESEKMLKSQGFKEVEK", "sequence_length": 153, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "41c2cc95f3bda3fab316ef867f0703f64e7ba8ac897329e931d04a4704b5ced8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q92F67.json", "taxon_id": "272626", "uniprot_accession": "Q92F67", "uniprot_release": "2026_03" } ], "pfam_id": "PF06998", "short_name": "DUF1307", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1308-pf07000.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07000", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1308-pf07000.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5614-pf18474.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18474", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5614-pf18474.yaml" } ], "pfam_ids": [ "PF07000", "PF18474" ], "protein_name": "UPF0415 protein C7orf25 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAHSMLCERIAIAKELIKRAESLSRSRKGGIEGGAKLCSKLKAELKFLQKVEAGKVAIKESHLQSTNLTHLRAIVESAENLEEVVSVLHVFGYTDTFGEKQTLVVDVVANGGHTWVKAIGRKAEALHNIWLGRGQYGDKSIIEQAEDFLQASHQQPVQYSNPHIIFAFYNSVSSPMAEKLKEMGISVRGDIVAVNSLLDHPEELQPSESESDDEGPELLQVTRVDRENILASVAFPTEIKVDVCKRVNLDITTLITYVSALSYGGCHFIFKEKVLTEQAEQERKEQVLPQLEAFMKDKELFACESAVKDFQSILDTLGGPGERERAAMLIKRINVVPDQPSERALKLVASSKINSRSLTIFGTGDNLKAITMTANSGFVRAANNQGVKFSVFIHQPRALTESKEALATPLPKDCTTDSEH", "sequence_length": 421, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0b47020850832af519775e0c9a4c8577b5d262d8dd765fdc86c8bc5f5feda0ee", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1LZE8.json", "taxon_id": "9913", "uniprot_accession": "Q1LZE8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1308-pf07000.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07000", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1308-pf07000.yaml" } ], "pfam_ids": [ "PF07000", "PF18474" ], "protein_name": "UPF0415 protein C7orf25 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAYSMLSERIAMAKELIKRAESLSRSKKGGIEGGAKLCSKLKSELKFLQKIESGKVAIKESHLQSTNLTHLKAIVESAENLEEVVSVLRVFGYTDSLGEKQTLVVDVVANGGHTWVKAIGRKAEALHNIWLGRGQYGDKSIIEQAEDFLQASRQQPVQYSNPHIVFAFYNSVSSPMADKLKDMGISVRGDIVAVNSLLNHPEEYLLSESESDDEGQELLQVTRVDLDNVLARVAFPTEIKVDVCRRVNLDITTLITYVSAMSYGGCHFIFKEKVLTEQAEQERKERVLPQLEAFMKDKELFACESAVKDFQSILDTLGGPGERERAAVLIKRINVVPDQPSERALKLVASSKINSRSLTIFGTGDTLKAITMTANSGFVRAANNQGVKFSVFIHQPRALTESKEALAVPLPKARTNDSAH", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5614-ipr041076.yaml" } ], "pfam_ids": [ "PF07000", "PF18474" ], "protein_name": "UPF0415 protein C7orf25 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAYSMLSDRIVMAKELIKRAESLSRSRKGGIEGGAKLCSKLKAELKFLQKIEAGKVAIKESHLQSTNLTHLKAIVESAENLEEVVSVLRVFGYTDTLGEKQTLVVDVVANGGHTWVKAIGRKAEALHNIWLGRGQYGDKSIIEQAEDFLQASRQQPVQYSNPHIVFAFYNSVSSPMADKLKDMGISVRGDIVAVNSLLNHPEEFQLSESESDDEGQELLQVTRVDRDNVLARVAFPTEIKVDVCKKVNLDITTLITYVSAMSYGGCHFVFKEKVLTEQAEQERKERVLPQLEAFMKDKELFACESAVKDFQSILDTLGGPGERERADVLIKRISVVPDQPSERALRLVASSKINSRSLTIFGTGDTLKAITMTANSGFVRAANNQGVKFSVFIHQPRALTESKEAFAVPLPKDLTDDSAH", "sequence_length": 421, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6533ddaef124af548025f99baff3c75a59a2d6e715d6e59db2dc4ae040a1da26", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91WD4.json", "taxon_id": "10090", "uniprot_accession": "Q91WD4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1308-ipr010733.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010733", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1308-ipr010733.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/shippo-rpt-pf07004.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07004", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/shippo-rpt-pf07004.yaml" } ], "pfam_ids": [ "PF07004" ], "protein_name": "Protein CIMAP1D", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"MDNSAQKNERTGKHPRRASEVQKGFTAAYPTQSSIPFKSQASVIPESEKKGFNSQAKRFPHKKNDIPGPGFYNVIHQSPVSNSVSLSKKGTCMFPSMCARLDTIISKYPAANAYTIPSDFISKRDFSNSCSSMFQLPSFMKALKFETPAPNYYNASVSCCKQRNNVCTRAGFMSKTQRGSFAFADKGPPPGHYDINESLVKQSPNTLMSCFKSKTNRGLKLTSTGPGPGYYNPSDCTKVPKKTLFPKNPILNFSAQPSPLPPKPPFPGPGQYEIVDYLGPRKHFISSASFVSNTSRWTAAPPQPGLPGPATYKPELPGKQSFLYNEDKKWIPVL", "sequence_length": 334, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "cadc69fcdcbd31ba92f8f23db991c902da6eb0f4894fa3473f0509b90e3fa554", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5TH74.json", "taxon_id": "9606", "uniprot_accession": "Q5TH74", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1314-pf07013.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07013", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1314-pf07013.yaml" } ], "pfam_ids": [ "PF07013" ], "protein_name": "Membrane protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHVISETLAYGHVPAFIMGSTLVRPSLNATAEENPASETRCLLRVLAGRTVDLPGGGTLHITCTKTYVIIGKYSKPGERLSLARLIGRAMTPGGARTFIILAMKEKRSTTLGYECGTGLHLLAPSMGTFLRTHGLSNRDLCLWRGNIYDMHMQRLMFWENIAQNTTETPCITSTLTCNLTEDSGEAALTTSDRPTLPTLTAQGRPTVSNIRGILKGSPRQQPVCHRVRFAEPTEGVLM", "sequence_length": 238, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "67bb1216236ab72c9577d1d36e4d5f1dc8319640909e6688ab410639cc555a7c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4JQX3.json", "taxon_id": "341980", "uniprot_accession": "Q4JQX3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Gallid herpesvirus 2 (strain Chicken/Md5/ATCC VR-987)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1314-pf07013.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07013", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1314-pf07013.yaml" } ], "pfam_ids": [ "PF07013" ], "protein_name": "Uncharacterized gene 71 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGIIFSNPIERTDKTLIESLRGRNMDLPGGGDLWIFANAGTSTMKFTTAGSRTSIQMYRVGRARTDGLTREFVILKGQDGNIYGVENASCIHFMSQNLHEFICKTGISQRDLMVTMGTFGGYKLNSPPKRYHKYHDSSLGRRRGISVDRSANTASCTQYEHEWSASGVLSTINPNDRILSHGSSKVRFGPTTVD", "sequence_length": 194, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "04d4ff425013bb2b5e22362a5a37966076917244a0f8bf64de4e647108565132", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9E6M2.json", "taxon_id": "10389", "uniprot_accession": "Q9E6M2", "uniprot_release": "2026_03" } ], "pfam_id": "PF07013", "short_name": "DUF1314", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudoalteromonas haloplanktis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1315-pf07023.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07023", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1315-pf07023.yaml" } ], "pfam_ids": [ "PF07023" ], "protein_name": "Uncharacterized protein in dagA 3'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIDNLVQNITPELFERLQYGAATGKWPDGTPLSDEQKQQTVQLVMLYQAKVAQSNEQFTIGANGEMVQKTKAQLQKEFNSDNEIARFSEHDL", "sequence_length": 93, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "67c33ec923773aef355185d7528befbb879b62f74b811815b88a00c5a345123e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P56607.json", "taxon_id": "228", "uniprot_accession": "P56607", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1315-pf07023.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07023", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1315-pf07023.yaml" } ], "pfam_ids": [ "PF07023" ], "protein_name": "Uncharacterized protein YeaC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLDDIINSMMPEVYQRLSTAVELGKWPDGVALTEEQKENCLQLVMLWQARHNIEAQHMTIDTNGQMVMKSKQQLKEDFGISAKPIAMFK", "sequence_length": 90, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "17b7e4b6c4d2d7ba5dc2f603ac0386d07aa351f649acf791175089f9636acc14", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76231.json", "taxon_id": "83333", "uniprot_accession": "P76231", "uniprot_release": "2026_03" } ], "pfam_id": "PF07023", "short_name": "DUF1315", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07026", "short_name": "DUF1317", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1318-pf07027.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1318-pf07027.yaml" } ], "pfam_ids": [ "PF07027" ], "protein_name": "Probable chaperone-like protein YdbL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKTLLLCAFLVGLVSSNVMALTLDEARTQGRVGETFYGYLVALKTDAETEKLVADINAERKASYQQLAKQNNVSVDDIAKLAGQKLVARAKPGEYVQGINGKWVRKF", "sequence_length": 108, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ab099a165108ab994f72b7765efc3b9cfc298a3abb5b22319637303fe2b34629", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76076.json", "taxon_id": "83333", "uniprot_accession": "P76076", "uniprot_release": "2026_03" } ], "pfam_id": "PF07027", "short_name": "DUF1318", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Commelina yellow mottle virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1319-pf07028.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07028", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1319-pf07028.yaml" } ], "pfam_ids": [ "PF07028" ], "protein_name": "Uncharacterized 23 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNVWLLKSHTPLGLLPYYSLLDPFCFMNQVDQVKQKLIDWLSSAKKLSEEVIVFTPEVKINLRDLAHNIHIIAHRVALGFKVIYLYLVDIIFPLLKNIQKSQKESSENLQSVLKIVKEQRRSLKQIEDQLSKVQSELAKLREDYLSRRPLSKQDVEELVVRISEQPKFIEKQTEALTEELKLKVEEVAKLIHSFKGMVLN", "sequence_length": 200, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2623521a6c87cef550930a9d9f8a969b22b8f10899d54661fc3fa3b989ea0020", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P19200.json", "taxon_id": "10653", "uniprot_accession": "P19200", "uniprot_release": "2026_03" } ], "pfam_id": "PF07028", "short_name": "DUF1319", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07030", "short_name": "Phage_Mu_Gp36", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07032", "short_name": "DUF1322", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yfec-like-pf07037.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07037", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yfec-like-pf07037.yaml" } ], "pfam_ids": [ "PF07037" ], "protein_name": "Uncharacterized protein YfeC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDSK", "sequence_length": 114, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eb1ee90092273bce64b1ddffdecb4cceecf67f671f65f95a0d8517a00d7f245f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AD37.json", "taxon_id": "83333", "uniprot_accession": "P0AD37", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yfec-like-pf07037.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07037", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yfec-like-pf07037.yaml" } ], "pfam_ids": [ "PF07037" ], "protein_name": "Uncharacterized protein YfeD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDIDESA", "sequence_length": 130, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cf91b43cbeff58dea39a86e6ed798066c7f5430e4809879f54585ae979cdc005", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P27238.json", "taxon_id": "83333", "uniprot_accession": "P27238", "uniprot_release": "2026_03" } ], "pfam_id": "PF07037", "short_name": "YfeC-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porcine circovirus 2", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/circovir2-orf4-pf07038.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07038", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/circovir2-orf4-pf07038.yaml" } ], "pfam_ids": [ "PF07038" ], "protein_name": "Anti-apoptotic ORF4 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTCTLVFQSRFCIFPLTFKSSASPRKFLTNVTGCCSATVTRLPLSNKVLTAVDRSLRCP", "sequence_length": 59, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "555505b2fc10983aabad001507ab4569b518eaee16314064bd04b74ae5ca632f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O56125.json", "taxon_id": "85708", "uniprot_accession": "O56125", "uniprot_release": "2026_03" } ], "pfam_id": "PF07038", "short_name": "Circovir2_Orf4", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/ada-complex-go0140671.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140671", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/ada-complex-go0140671.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLVSLFMGRKRP", "sequence_length": 53, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2478e0f3ba422a83ca14222d49a2b43998adac1b211ac9c136e78229c10e667d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q2M5U1.json", "taxon_id": "83333", "uniprot_accession": "Q2M5U1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1328-pf07043.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07043", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1328-pf07043.yaml" } ], "pfam_ids": [ "PF07043" ], "protein_name": "UPF0391 membrane protein YtjA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIVLFLVSLFMGRKRP", "sequence_length": 53, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "54199b92d3eb72670f48a928b1c76e29542d0c40bf4553b5b6fb02d9e9e1484d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q7CP67.json", "taxon_id": "99287", "uniprot_accession": "Q7CP67", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhi", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1328-pf07043.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07043", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1328-pf07043.yaml" } ], "pfam_ids": [ "PF07043" ], "protein_name": "UPF0391 membrane protein YtjA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIVLFLVSLFMGRKRP", "sequence_length": 53, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "54199b92d3eb72670f48a928b1c76e29542d0c40bf4553b5b6fb02d9e9e1484d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8XEW6.json", "taxon_id": "90370", "uniprot_accession": "Q8XEW6", "uniprot_release": "2026_03" } ], "pfam_id": "PF07043", "short_name": "DUF1328", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1329-pf07044.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07044", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1329-pf07044.yaml" } ], "pfam_ids": [ "PF07044" ], "protein_name": "Uncharacterized protein PA3922", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTTKILLHTGVLALSLLATQVMAAVSADEAAKLGTSLTPLGAEKAGNADGSIPAWDGGLATNAGSVDSRGFLANPYASEQPLFTITAQNVDQYKDKLTPGQLAMFKRYPDTYKIPVYKTHRSATVPAAVQEAAKRNATTTKLVEGGNGLENFDTANPFPIPQNGLEVIWNHITRYRGGSVRRLVTQATPQVNGSYQLVYFQDAFTFRTNLKDYNPNKPSNVLFYFKQRVTAPSRLAGNVLLVHETLNQVKEPRLAWLYNAGQRRVRRAPQVSYDGPGTAADGLRTSDNFDMYNGAPDRYDWKLEGKKEIYIPYNSYKLDDPKIKYSEIVKAGHINQDLTRYELHRVWHVVATLKPGERHIYAKRDFYIDEDTWQAAEIDHYDGRGTLWRVAEAHAEQYYDKQVPWYAVETLYDLLSGRYLALGMKNEEKQAYDFNYSASESDYTPAALRQEGVR", "sequence_length": 455, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d908bdfb49d3f036ab9452f66f0a1cc93af2bf576fa256b626c3314cc1cb197a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HX91.json", "taxon_id": "208964", "uniprot_accession": "Q9HX91", "uniprot_release": "2026_03" } ], "pfam_id": "PF07044", "short_name": "DUF1329", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07045", "short_name": "DUF1330", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07048", "short_name": "DUF1331", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07056", "short_name": "DUF1335", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/edr2-c-pf07059.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07059", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/edr2-c-pf07059.yaml" } ], "pfam_ids": [ "PF00169", "PF01852", "PF07059" ], "protein_name": "Protein ENHANCED DISEASE RESISTANCE 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKVVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDYQVPIKTMLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKSHRITMAAFNIQEALMWKEKIESVIDQHQESQVPNGQQYVSFEYKSGMDTGRTASSSDHESQFSAAEDEEDSRRSLMRRTTIGNGPPESVLDWTKEFDAELANQNSDNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCEEIFELLMSMDGTRYEWDCSFQFGSLVEEVDGHTAVLYHRLLLDWFPMIVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGCVRAHLESGGYNISPLKPRNGRPRTQVQHLIQIDLKGWGAGYLPAFQQHCLLQMLNSVAGLREWFSQTDERGVHTRIPVMVNMASSSLSLTKSGKSLHKSAFSLDQTNSVNRNSLLMDEDSDDDDEFQIAESEQEPETSKPETDVKRPEEEPAHNIDLSCFSGNLKRNENENARNCWRISDGNNFKVRGKNFGQEKRKIPAGKHLMDLVAVDWFKDSKRIDHVARRKGCAAQVAAEKGLFSMVVNVQVPGSTHYSMVFYFVMKELVPGSLLQRFVDGDDEFRNSRLKLIPLVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPTYLEIDVDIGSSTVANGVLGLVIGVITSLVVEMAFLVQANTAEEQPERLIGAVRVSHIELSSAIVPNLESE", "sequence_length": 718, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0a9b096787ecfc2b442290d01cd76c013cf8b9ae64c2914b42230f120544995d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4JSE7.json", "taxon_id": "3702", "uniprot_accession": "F4JSE7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/edr2-c-pf07059.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07059", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/edr2-c-pf07059.yaml" } ], "pfam_ids": [ "PF00169", "PF01852", "PF07059" ], "protein_name": "Protein ENHANCED DISEASE RESISTANCE 2-like", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKVVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDNQLPIKTMVIDGNCRVEDRGLKTHHGHMVYVLSIYNKKEKHHRITMAAFNIQEALMWKEKIECVIDQHQDSLVPSGQQYVSFEYKPGMDAGRTASSSDHESPFSALEDENDSQRDLLRRTTIGNGPPESILDWTKEFDAELSNQSSSNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCEEIFELVMSMDGTRYEWDCSFHNGRLVEEVDGHTAILYHRLLLDWFPMVVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNIAPLKPRNGRPRTQVQHLIQIDLKGWGSGYLPAFQQHCLLQMLNSVSGLREWFSQTDDRGQPIRIPVMVNMASSSLALGKGGKHHHKSSLSIDQTNGASRNSVLMDEDSDDDDEFQIPDSEPEPETSKQDQETDAKKTEEPALNIDLSCFSGNLRHDDNENARNCWRISDGNNFKVRGKSFCDDKRKIPAGKHLMDLVAVDWFKDTKRMDHVVRRKGCAAQVAAEKGLFSTVVNVQVPGSTHYSMVFYFVTKELVPGSLFQRFVDGDDEFRNSRLKLIPLVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPTYLEIDVDIGSSTVANGVLGLVIGVITSLVVEMAFLVQANTPEELPERLIGAVRVSHVELSSAIVPNLDSD", "sequence_length": 719, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4a467c0b5ee60b4f425e8d0b7b1e8b1f0588abbd80f93a1787f434391e2907fb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VZF6.json", "taxon_id": "3702", "uniprot_accession": "Q8VZF6", "uniprot_release": "2026_03" } ], "pfam_id": "PF07059", "short_name": "EDR2_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/swi5-pf07061.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07061", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/swi5-pf07061.yaml" } ], "pfam_ids": [ "PF07061" ], "protein_name": "Pachytene arrest protein SAE3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNYLETQLNKKQKQIQEYESMNGNLIKMFEQLSKEKKNDETPKKISSTYIKELKEYNELRDAGLRLAQIIADEKQCKIKDVFEEIGYSMKD", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c2ef7e5d4ec73ed1c9312e93b6a3912ffb881da948d4ee43d45b3ad7f53823e0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P89114.json", "taxon_id": "559292", "uniprot_accession": "P89114", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/swi5-sfr1-complex-go0032798.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032798", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/swi5-sfr1-complex-go0032798.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/swi5-pf07061.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07061", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/swi5-pf07061.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q1ZZU3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07061" ], "protein_name": "DNA repair protein SWI5 homolog", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a8de5baeaf62e40294f200dfac04b2c424612843e30138ec618517ab1532c1e7", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQRRGQRDLWRHNKSCARNRCPRPPRERGGAGFPWVRAQLSVRQFTLRVRVPGPVHLRGRSPTPALDPLAPLNPLIRGPRTPGLRRWIQSLALLLPNCSSSRIPTVPRPHSGLWVQSDFPLGFLSRTEPRLTRSCRGAFRSPRPLPKSGQADGTSEESLHLDIQKLKEKRDMLDKEISQFVSEGYSVDELEDHITQLHEYNDIKDVGQMLMGKLAVIRGVTTKELYPEFGLDMND", "sequence_length": 235, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a8de5baeaf62e40294f200dfac04b2c424612843e30138ec618517ab1532c1e7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1ZZU3.json", "taxon_id": "9606", "uniprot_accession": "Q1ZZU3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/swi5-sfr1-complex-go0032798.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032798", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/swi5-sfr1-complex-go0032798.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/swi5-pf07061.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07061", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/swi5-pf07061.yaml" } ], "pfam_ids": [ "PF07061" ], "protein_name": "DNA repair protein SWI5 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIDENNDVSEEALSSDIKKLKEKHDMLDKEISQLIAEGYRVIELEKHISLLHEYNDIKDVSQMLLGKLAVTRGVTTKELYPDFDLNLND", "sequence_length": 89, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ccf8ba376c9d5f05d8addc7e480460729e58f58dde51e2465468d59286afb356", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8K3D3.json", "taxon_id": "10090", "uniprot_accession": "Q8K3D3", "uniprot_release": "2026_03" } ], "pfam_id": "PF07061", "short_name": "Swi5", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/2-oxoadipate-dioxygenase-decarboxylase-hgls-nf049974.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF049974", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/2-oxoadipate-dioxygenase-decarboxylase-hgls-nf049974.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uncharacterized-metal-dependent-enzyme-similar-to-shigella-flexneri-yd-cd16348.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd16348", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uncharacterized-metal-dependent-enzyme-similar-to-shigella-flexneri-yd-cd16348.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hgls-pf07063.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hgls-pf07063.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/uncharacterised-protein-pf07063-duf1338-3-10-180-80.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.180.80", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/uncharacterised-protein-pf07063-duf1338-3-10-180-80.yaml" } ], "pfam_ids": [ "PF07063" ], "protein_name": "2-oxoadipate dioxygenase/decarboxylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANSITADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPQLHEKMVNADELARLNVERHGAIRVGTAQELATLRRMFAIMGMYPVSYYDLSQAGVPVHSTAFRPIDDASLARNPFRVFTSLLRLELIENEILRQKAAEILRQRDIFTPRCRQLLEEYEQQGGFNETQAQEFVQEALETFRWHQSATVDEETYRALHNEHRLIADVVCFPGCHINHLTPRTLDIDRVQSMMPECGIEPKILIEGPPRREVPILLRQTSFKALEETVLFAGQKQGTHTARFGEIEQRGVALTPKGRQLYDDLLRNAGTGQDNLTHQMHLQETFRTFPDSEFLMRQQGLAWFRYRLTPSGEAHRQAIHPGDDPQPLIERGWVVAQPITYEDFLPVSAAGIFQSNLGNETQTRSHGNASREAFEQALGCPVLDEFQLYQEAEERSKRRCGLL", "sequence_length": 447, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0e34a3f54a82045a6ee58817c4406f3cfcfeb4a09647c24732b61702d4bca13a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76097.json", "taxon_id": "83333", "uniprot_accession": "P76097", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hgls-pf07063.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hgls-pf07063.yaml" } ], "pfam_ids": [ "PF07063" ], "protein_name": "2-oxoadipate dioxygenase/decarboxylase, chloroplastic/amyloplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVALAGARSPGAGAILSLRRLAPAAAAPVRLGGSGTPGTRRRRGIAMAAAASAPPAPADALPKGADSFFRTVISNMEKVYLSRNPTAKTILELVRSYDGDHICYDHFAFRTFGVDGYGIKSLAEFFTDFGYVPREELRFPAKKLRALWFSPPTNDGYTGTGVYGPLPRIFISELLVDELSPQSQDIIQKYIRTSGKGNKHATLASTSGELTWEKPIYSDFQVLSRESEYAAWTLVNGYALNHTTISTHRLISDIRSINKFNKFVEDNGFKLNSEGGILKVSPDGLLQQSSTVADSALFTFADGITESIPRSYIEFAERLVLPQFKDLPNDEVNEHHRRDGFEVGNADKIFESTSNDQLTRRSA", "sequence_length": 364, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5b341120384c739143b96c02b56ccdb70e014dff121bd2735c1619f8a4e8f2e0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q337M4.json", "taxon_id": "39947", "uniprot_accession": "Q337M4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hgls-pf07063.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hgls-pf07063.yaml" } ], "pfam_ids": [ "PF07063" ], "protein_name": "2-oxoadipate dioxygenase/decarboxylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPANDFVSPDSIRAQFSAAMSLMYKQEVPLYGTLLELVSEINQQVMAQQPEVAEALRWTGEIERLDQERHGAIRVGTAEELATIARLFAVMGMQPVGYYDLSSAGVPVHSTAFRAVHEQSLHVSPFRVFTSLLRLELIDNPQLRELAQSILAKRQIFTSRALELIAQCEREGGLDAADAETFVQEALHTFRWHQDATVTAEQYQQLHDQHRLIADVVAFKGPHINHLTPRTLDIDAIQLGMPAKGIPPKAVVEGPPTRRHPILLRQTSFKALQETVAFRDQQGREGSHTARFGEIEQRGAALTPKGRQLYDKLLDATRVALGGAPAEANAERYMALLQANFAEFPDDLAQMREQGLAYFRYFATEKGLAARDQEGRPTTLQGLIDAGHVHFEALVYEDFLPVSAAGIFQSNLGDDAQAEYGSNANREAFEAALGLQVQDELALYAQSERRSLQACAQALNLGSM", "sequence_length": 464, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "659c4c8b8b6ae501f44f65fe45302646241004c2e674b8e68f8de1fbffd7df57", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q88CC1.json", "taxon_id": "160488", "uniprot_accession": "Q88CC1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-the-vicinal-oxygen-chelate-voc-family-the-cd16350.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd16350", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-the-vicinal-oxygen-chelate-voc-family-the-cd16350.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-10-180-50-3-10-180-50.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.180.50", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-10-180-50-3-10-180-50.yaml" } ], "pfam_ids": [ "PF07063" ], "protein_name": "2-oxoadipate dioxygenase/decarboxylase, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISLHSSAIKASLYGSFPSSLRSTLSVSFSAGSLIRLPSVGKRNLSVVVSSGRDSSMSSNNVSRGSSSKVAAESFFRSVLGQMETVYLNRNPTPKSVLELVRSVDDQQLCYDHLAFRTFGIGGYGIDSLASFFLDYGYTPMDELKFPAKKLRALWFAPPNASAVPGGSGVNGPLPRVFISELLVDQMSSQTQDVIRKYTEASPNGKKYAGLSSALGTLTWEKPLSSEFEQLARESEYAAWTLVNGYALNHVTISVHRLKSHLNKIKKLNQFLEEKGIKLNSEGGVLKVSPDGGLQQSSTVADSISFKFADGVTKSIPCSYIEFAERLVLPQYQNIPESEIQESHRRDGFEVGNADKIFESTFQEQLSRRTG", "sequence_length": 371, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4e48f23ed2610c4b7d03b30092bcaed0230736be06a67b8b03c4565f98cd2138", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LMJ7.json", "taxon_id": "3702", "uniprot_accession": "Q9LMJ7", "uniprot_release": "2026_03" } ], "pfam_id": "PF07063", "short_name": "HGLS", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/ric1-rgp1-guanyl-nucleotide-exchange-factor-complex-go0034066.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034066", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/ric1-rgp1-guanyl-nucleotide-exchange-factor-complex-go0034066.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ric1-c-terminal-alpha-solenoid-region-ipr009771.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ric1-c-terminal-alpha-solenoid-region-ipr009771.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ric1-second-beta-propeller-domain-ipr059256.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR059256", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ric1-second-beta-propeller-domain-ipr059256.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-ric1-2nd-pf25440.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25440", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-ric1-2nd-pf25440.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/ric1-pf07064.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/ric1-pf07064.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P40395", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07064", "PF25440" ], "protein_name": "Guanine nucleotide exchange factor subunit RIC1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a443ef3269a02908dcd08866bb148609f07ce252abdc7153467f80bce8c1275e", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MFIKQSEKNTPKCLYKKKGKVRVLLTGSCKKLNTWKMHLWPVSPPQLLRIPPRNAELGEGTKIDDCNILQSMTLPQANVLIMLTPTRVLIYNFKPMALVASHERTMASLKEFGDNRSMKRSAPYNDIIEGLISKKDSQYLLWHQGKLIFYVMTDKNFLLTYQILKNCTNEIIFKEYGIPVIEPLLMSEEEANSAEYDYNNDDDTLTVFDKNSSSRIIQNGFGITKEKGFLHFLSNQENIDELPVKKLELRLKVVLKFDYEIIDMIGIKTFSKVGDGRYEEVLIVLFPHGLQILTISDFKVSKSSLVEVKKGSKTIVCNKQLMVLSHDSVEKQTIVSIIDIEKQAVEAIPLTDTPDELLTCLEVNGYLVVVYKEKIICFDTRIKKVSHSWKPPFVIKLCDKINDKILLLVSEDSVNIHFYTEFGNLLFATYFDEDDYNGDNNNDNSKDKNEKKAAEYKISDFVCLDKSLITVSHSGKYQVWKLWEEIKQTQFDFRNPKCYVLTNTNNDVIIYSPVTSSSINNDNLQVIKLPTKTFNNHIAFVKINSSLRLFATYVSNKNILLIHNLETNMWSSFADQNVLDLHWLGDNYLVCHMKNDDGSTNLKCLQIPLQEANPDVELSDYVMWEYNVPENTIVFSLHVNTLSRYKLLKMKSKNHNASEKQPDALLKTAEIILVTDTQTIVFDVISTVHPCGLNIIKKFYQYLKINIPIDVLPNKIEWIINMKEGLLFFADRKFIKLGKVDGGGWQTLTLLDNIEKIIDVIRDEIFVVQGHNYVVYSLEDLWDDKKPLVSIPIEEDLYPISTTPETATTHTLHCIFNARFSKLVVKHQIYLDQLILAKLEDNTDLEDISHNYRFLKPYKFALEKILSTKILRSDSLDDILKLIKMYDNTDPEHNISPPTHSGMLEIISNCLRKIETKYWNHLFTNLKMTPRDLLALCIEENEAKMLGVLLLVFLNYDEKDLGDDLHFKKSDLGTEESKALNDNSTKKSEKSVTNLLKDEELMLKVLELLVTSAANATDPIKATDSWDMCFQLIRLLKELDRENNTQLVQKALERFK", "sequence_length": 1056, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a443ef3269a02908dcd08866bb148609f07ce252abdc7153467f80bce8c1275e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40395.json", "taxon_id": "559292", "uniprot_accession": "P40395", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/ric1-rgp1-guanyl-nucleotide-exchange-factor-complex-go0034066.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034066", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/ric1-rgp1-guanyl-nucleotide-exchange-factor-complex-go0034066.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ric1-c-terminal-alpha-solenoid-region-ipr009771.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ric1-c-terminal-alpha-solenoid-region-ipr009771.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ric1-second-beta-propeller-domain-ipr059256.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR059256", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ric1-second-beta-propeller-domain-ipr059256.yaml" } ], "pfam_ids": [ "PF07064", "PF25440" ], "protein_name": "Guanine nucleotide exchange factor subunit R06F6.8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFIPNDRPSVLQLPKHEKDSTAADIKSIVANRDRRLIAVATNDAIYIWLANPQLLLCSVGVIDANFKETRGELKEIYWKPDSTSIAVTTNQCKILIYNLDLRDDEQCYNFTDSADPYFQRNSPELFIKGSRPTAHLHPTIIINLADIPTCCVPSRDEFLVCLQNGFTHHVTWTGEIIASLSFRASSIPFSVDQLQSKSENITSKSTYIFDAVYAPLLGGFAIVLSDGQGALLTSNDPNFAPNAILGVWAPNMKDATCCDVNHKFLLILFGCKNGDVCAYNIDELNGSLVQSFRVAPKVTNGPDLTNRLGPVHRITALANGYGFGAIWSPLSGAHALPRLVAVFTSFGAQSFCNLEGVVEEDQNDRYTAIEWGPEGFQLWLGTENELMMQPFVRSASCSSPAMEHCDRAVLMSDSQVLISAARDREAEACAPHSVWDHITVTHEYLSSNWPLRYASTDRNYKHLVVAGDQGMAYCSLSNRRWKIFGNETQEKNLLVTGGVFIWNDDVIGVVGVAADTDKSHLSFYPISQRLDSRYASVVDLEHKSVMSVLRDDVCAVFDISAQITLYKLTAHLETGRDAFTKVSTEIVTVIRINEIVPHPTCIVSLQMTQLNLDVRGKLSPAFYSSIDTVLVNISGRLITLSVNEDGKLHQPMVIASYVEKMWHDRCQVSQSTQSQNQDLPWKNHRRNGSNVSIQSVSTSTTSEPSSPMNQSCSSHLSNALWIACGAKGIKVWMPLVPGKRNLATQEMTFIAKRIMLPFELDIYPIVISAKDCLAMGVESQLQHVARASRNQGQMESITMYGLHRNSEVFVHHLLRQLLKRNLGVFALELAGACRSLPHFTHALELLLHGVLEEEATSSEPIPDPLLPRCVAFIHEFPEFLKTVAHCARKTELALWRTLFDVTGSPNALFEECLQLKQLENAASFVIVLQNLETTEVSMDQAARLVKEALEEKKWTIAKEMVRFARSIGSEDIDAFFRTPPPSAKTSLSRRPTVSSPSADSSTEFVINRFQAGAAGGRLNKVRHSQSTEQKDAPRKDSIGGSSKDKMALSWGLSGELSPQLATNRLAAKMTSILEDHAWHLLNNYWLLDLGFFWSELQFDLLGLLETRRKQISLSPKTTNENCFLIEDFALALTRLHAQFSWPYPLIGSQFVHQIEKKLGNIRVSQSTASLNGLLNDSLDNIKKPKARKLERTVVDLNGARSRIRETDIEASEEDVEIQEAVLERVRGSAVELAPVIDRSPSTSSSMNHHAPLAPPSPSSCDSRSLAGDCYQNTDFLVGEKSSRGNLQSSHQLELLLSLFSQTATIDWIFLFCLLSRDERKLRQEINVSMVRRAGEKSFARVRFACSELSRWAVEKCCGYVALLQAFDAHLAVVAEQAGCADLKFSPDNENRKASQKTSADDPKRGRRRADSGSSKLNNSFSNPKLNGMNGGRRERSRSADRAHKSVKRYDDVVCAEDALEKANEEGCSIM", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/ric1-pf07064.yaml" } ], "pfam_ids": [ "PF07064", "PF25440" ], "protein_name": "Guanine nucleotide exchange factor subunit RIC1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYFLSGWPKRLLCPLGSPAEAPFHVQSDPQRAFFAVLAAARLSIWYSRPSVLIVTYKEPAKSSTQFGSYKQAEWRPDSTMIAVSTANGYILFFHITSTRGDKYLYEPVYPKGSPQMKGTPHFKEEQCAPALNLEMRKILDLQAPIMSLQSVLEDLLVATSDGLLHLIHWEGMTNGRKAINLCTVPFSVDLQSSRVGSFLGFTDVHIRDMEYCATLDGFAVVFNDGKVGFITPVSSRFTAEQLHGVWPQDVVDGTCVAVNNKYRLMAFGCVSGSVQVYTIDNSTGAMLLSHKLELTAKQYPDIWNKTGAVKLMRWSPDNSVVIVTWEYGGLSLWSVFGAQLICTLGGDFAYRSDGTKKDPLKINSMSWGAEGYHLWVISGFGSQNTEIESDLRSVVKQPSILLFQFIKSVLTVNPCMSNQEQVLLQGEDRLYLNCGEASQTQNPRSSSTHSEHKPSREKSPFADGGLESQGLSTLLGHRHWHVVQISSTYLESNWPIRFSAIDKLGQNIAVVGKFGFAHYSLLTKKWKLFGNITQEQNMIVTGGLAWWNDFMVLACYNINDRQEELRVYLRTSNLDNAFAHVTKAQAETLLLSVFQDMVIVFRADCSICLYSIERKSDGPNTTAGIQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGITLKMPQQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWTTCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVLFEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGEQALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVVHCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLLFNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSAENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCFAAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTVGEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPLSNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQVQLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDRWASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSSHGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/ric1-rgp1-guanyl-nucleotide-exchange-factor-complex-go0034066.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-extracellular-matrix-constituent-secretion-go0003330.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0003330", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-extracellular-matrix-constituent-secretion-go0003330.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ric1-c-terminal-alpha-solenoid-region-ipr009771.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ric1-c-terminal-alpha-solenoid-region-ipr009771.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ric1-second-beta-propeller-domain-ipr059256.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR059256", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ric1-second-beta-propeller-domain-ipr059256.yaml" }, { 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"MYFLSGWPKRLLCAPRSPAEAPLHVQSDPRRAFFAVLAPARLSIWYSRPSVLIVTYKEPAKSSTQFGSYKQAEWRPDSTMIAVSTANGYILFFHITSSRGDKYLYEPVYPKGSPQMKGIPHFKEEHCAPALNLEMKKILDLQAPIMSLQSVLEDLLVATSDGLLHLIHWEGMTNGRKAINLSTVPFSVDLQSSRVGSFLGFADVHIKDMEYCATLDGFAVVFNDGKVGFITPVSSRFTAEQLHGVWPQDVIDGTCVAVNNKYRLMAFGCASGCVQVYTIDNTTGAMLLSHKLELTAKQYPDIWNKTGAVKLIRWSPDNSAVIVTWEYGGLSLWSVFGAQLICTLGGDFAYRSDGTKKDPLKINSMSWGAEGYHLWVISGLGSQHTQIETDLRSTVKEPSILLFQFIKSVLTVNPCMSNQEQVLLQGEDRLYLNCGEASQAQNPKYSSARAERMPRHEKSPFADGGLEAPGLSTLLGHRHWHVVQISSTYLESNWPIRFSAIDKLGQNIAVAGKFGFAHYSLLTKKWKLFGNITQEQNMIVTGGLAWWDDFMVLACYNLSDCQEELRIYLRTSNLDNAFAHVTKAPMETLLLSVFRDMVVVFRADCSICLYSIERKSDGSNTTASVQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGISLKMPQQARDAESIMLNLAGQLIMMQRDRSGPQIREKDSHPNQRKLLPFCPPVVLAQSVENVWTTCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVLFEDALVLGAVNDTLLYDSLYTRSSAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGEQALLLAQSCAALPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVVHCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLLFNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTSQEPSSSGGFEFFRNRSISLSQSAENVPPGKFGLQKTLSMPTGPSGKRWSKDSECAENMYIDMMLWRHARRLLEEVRLKDLGCFAAQLGFELISWLCKERTRAARVDNFVVALKRLHKDFLWPLPIIPASSISSPFKNGKCRAVGEQMLKSQSADPFITPEMDAGISNIQRSQSWLSNIGPTHRDTDRASSPGPQMQDAFLSPLSNKGDECSIGSATDLTESSSVVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQVQLRYLLHIFMEAGCLDWCVVIGLILRESSVVSQLLGIAQSSEMDGEMLQNIKSGLQAVDRWASTDCPGYKPFLNIIKPQLQKLSEITEELVQPDTFQPVTVGKTPEQTSPRAEENRGSCSHGSISQSEPGSNNVVSRKEEDTTQADEEEPLQDGAYDCSVS", 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"EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRKTIFAFLTGLMMFGTITAASASPDSKNQTAKKPKVQTGIDTLLPDYKKQLKGKRIGLITNPAGVNTSLKSSVDILYENPDIKLTALFGPEHGVRGDAQAGDEVGSYIDEKTGVPVYSLYGKTKKPTPEMLKNVDILMFDIQDVGTRFYTYIYTMAYAMEAAKENGIPFMVLDRPNPQGGNHIEGPILEPEYASFVGLYPIPLKHGMTIGELASLFNKEFSIDADLTVVKMKHWKRKMDFDDTRLPFVLPSPNMPTVESTFVYPATGLIEGTNISEGRGTTKPFELIGAPFIKSTELEETLNSLHLPGVTFRAASFTPTFSKHQGTLCHGVQLYVTDRDKFEAVKTGLSVIKTIHDLYPEDFEFLSTGSFDKLAGNGWIRTKIENGTSVENIINSYEKTLQQFSKTRKKYLIY", "sequence_length": 414, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "fcbf4dc33e9c7e1f86cebe8e48bd5e8890b50b496b44f7485abb177350413f21", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40407.json", "taxon_id": "224308", "uniprot_accession": "P40407", "uniprot_release": "2026_03" } ], "pfam_id": "PF07075", "short_name": "NamZ_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07076", "short_name": "DUF1344", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Burkholderia pseudomallei (strain 1026b)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bpss1818-pf07077.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07077", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bpss1818-pf07077.yaml" } ], "pfam_ids": [ "PF07077" ], "protein_name": "Virulence factor BP1026B_II1948", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTFYPQVLRNRPRMVIAVAAGVALGLLFPYPLRPFARVLIGWDCTIWLYLVLMWVRMVRAHHHKVREIAMREDENATMVLTIICFATVASIAAIVLELVSAKSVGFRSGLGHYAVTGATMFGAWFLIPTIFTLHYARLYYLSPKEARAMAFPDRELEPDYWDFLYFSFTIAVASQTADVSLRGRSIRRAALAQSILSFYFNMAVLGLSVNVAAGLLS", "sequence_length": 217, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4ac53c10ba3b73e93aedc5c2de36d9f41bb30a3b0fb09a33ac84ffe21065b581", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0H3HW87.json", "taxon_id": "884204", "uniprot_accession": "A0A0H3HW87", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Burkholderia pseudomallei (strain K96243)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bpss1818-pf07077.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07077", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bpss1818-pf07077.yaml" } ], "pfam_ids": [ "PF07077" ], "protein_name": "Virulence factor BPSS1818", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTFYPQVLRNRPRMVIAVAAGVALGLLFPYPLRPFARVLIGWDCTIWLYLVLMWVRMVRAHHHKVREIAMREDENATMVLTIICFATVASIAAIVLELVSAKSVGFRSGLGHYAVTGATMFGAWFLIPTIFTLHYARLYYLSPKEARAMAFPDRELEPDYWDFLYFSFTIAVASQTADVSLRGRSIRRAALAQSILSFYFNMAVLGLSVNVAAGLLS", "sequence_length": 217, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4ac53c10ba3b73e93aedc5c2de36d9f41bb30a3b0fb09a33ac84ffe21065b581", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q63JA0.json", "taxon_id": "272560", "uniprot_accession": "Q63JA0", "uniprot_release": "2026_03" } ], "pfam_id": "PF07077", "short_name": "BPSS1818", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fytt-pf07078.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07078", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fytt-pf07078.yaml" } ], "pfam_ids": [ "PF07078" ], "protein_name": "UAP56-interacting factor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNRFSTRLMGATATPPPAPPKARSNENLDKIDMSLDDIIKLNRKEGKKQNFPRLNRRLQQSSARQFRMRVRWGIQQNSGFGKNSLSRRGRVMPGKRRPYGVITGLAARKATGIRKGISPMNRPPLSDKNIERYFPALKRKANLLRQNEVQRKPVAALKRPNQLNRKNNIPNNFTRSGNKLSHQKDTRQATFLFRRGLKVQAQLNSEQLLDDVVAKRTRQWRTSTTNGGILTVSIDNPGAVQCPVTQKPRLTRTAVPSFLTKRDQSDIKKVPKGVPLQFDINSVGKQTGMTLNERFGILKEQRATLTFNKGGSRFVTVG", "sequence_length": 318, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "811e66211bc2d5e1a1c058927a49d4ff4dc20e7fe879ae962c1b6d03223d91c1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q17QU6.json", "taxon_id": "9913", "uniprot_accession": "Q17QU6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fytt-pf07078.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07078", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fytt-pf07078.yaml" } ], "pfam_ids": [ "PF07078" ], "protein_name": "UAP56-interacting factor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNRFGTRLVGATATPPPPPKARSNENLDKIDMSLDDIIKLNRKEGKKQNFPRLNRRLQQSGTRQFRMRVRWGIQQNSGFGKTSLSRRGRVLPGKRRPYGVITGLAARKATGIRKGISPMNRPPLSDKNIERYFPALKRKTSLLRQNEVQRKQVAVLKRPNQLNRKNNIPANFTRNGNKLSHQKDTRQATFLFRRGLKVQTQLNTEQLIDDVVAKRTRQWRTSTTNGGILTVSIDNPGAVQCPVTQKPRLTRTAVPSFLTKREQSDVKKVPKGVPLQFDINSVGKQTGMTLNERFGILKEQRANLTFSKGGSRFVTVG", "sequence_length": 317, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9ccfcd3d47e78a64b7513e748ddb0585ea5c220ba4d7b2209b4ffc20567ebee1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91Z49.json", "taxon_id": "10090", "uniprot_accession": "Q91Z49", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fytt-pf07078.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07078", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fytt-pf07078.yaml" } ], "pfam_ids": [ "PF07078" ], "protein_name": "UAP56-interacting factor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNRFGTRLVGATATSSPPPKARSNENLDKIDMSLDDIIKLNRKEGKKQNFPRLNRRLLQQSGAQQFRMRVRWGIQQNSGFGKTSLNRRGRVMPGKRRPNGVITGLAARKTTGIRKGISPMNRPPLSDKNIEQYFPVLKRKANLLRQNEGQRKPVAVLKRPSQLSRKNNIPANFTRSGNKLNHQKDTRQATFLFRRGLKVQAQLNTEQLLDDVVAKRTRQWRTSTTNGGILTVSIDNPGAVQCPVTQKPRLTRTAVPSFLTKREQSDVKKVPKGVPLQFDINSVGKQTGMTLNERFGILKEQRATLTYNKGGSRFVTVG", "sequence_length": 318, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8162969ad6b0208d7e039976c3087812582ca9156e205239f5aca054c589f262", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q96QD9.json", "taxon_id": "9606", "uniprot_accession": "Q96QD9", "uniprot_release": "2026_03" } ], "pfam_id": "PF07078", "short_name": "FYTT", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07079", "short_name": "DUF1347", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07080", "short_name": "DUF1348", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1349-pf07081.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07081", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1349-pf07081.yaml" } ], "pfam_ids": [ "PF07081" ], "protein_name": "Regulation of enolase protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVESKNTELSQGTWLNKPKSVFQEAGKVTLETDEKTDFWRETFYGFTRDSGHFLGVETGSAFTAQVRVQGSYESLYDQAGIMVRIDDGHWLKAGIEISDGHAMLSSVLTNGKSDWSTAVYGGNARDFWLRVTVEKGVLRIQVSSDKKTWPLVRLAPFPTSDHYLVGPMACTPERGGLKVTFSEWSLTAPLGKALHDLS", "sequence_length": 198, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5abaf2acd777c5faef051605f825bcea6bded0ce7221839c62a5839585f58f06", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40893.json", "taxon_id": "559292", "uniprot_accession": "P40893", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1349-pf07081.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07081", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1349-pf07081.yaml" } ], "pfam_ids": [ "PF07081" ], "protein_name": "Uncharacterized protein AN7484", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGFASANLLERVPEDEVLPAEFTVKAPPETDIWAKPPSTERFNAPILYKSIPLDTFKRARVAFSANWSQKYDQGGLIIVLNGNSGDRKWVKTGIEFTHDKPHLSTVAKDRWADWSLLPVPSGGTGATLEVVREPDDSLWIYLIQGVQKSPIREVTWVFAEEDVRDAWIGVYAARPSSAGGDLVVNFASLIIEVTDSTTK", "sequence_length": 200, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6c697631c72909e91911ef1f2024eee3f9a7dc39dc2379b5020fc7d0f1b398b8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5AW46.json", "taxon_id": "227321", "uniprot_accession": "Q5AW46", "uniprot_release": "2026_03" } ], "pfam_id": "PF07081", "short_name": "DUF1349", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07082", "short_name": "DUF1350", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07083", "short_name": "DUF1351", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/jagunal-pf07086.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07086", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/jagunal-pf07086.yaml" } ], "pfam_ids": [ "PF07086" ], "protein_name": "Protein jagunal homolog 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASRAGPRAAGTDGSDFQHRERVAMHYQMSVTLKYEIKKLIYVHLVIWLLLVAKMSVGHLRLLSHDQVAMPYQWEYPYLLSIVPSVLGLLSFPRNNISYLVLSMISMGLFSIAPLIYGSMEMFPAAQQLYRHGKAYRFLFGFSAVSVMYLVLVLAVQVHAWQLYYSKKLLDSWFTSTQEKKRK", "sequence_length": 183, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "919604cb7457710cacde57bb375420fefe5ac6d229f6c2d34ed0f50f8672d1c1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5XKN4.json", "taxon_id": "10090", "uniprot_accession": "Q5XKN4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/establishment-of-er-localization-go0051686.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051686", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/establishment-of-er-localization-go0051686.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/vitellogenesis-go0007296.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0007296", "section": "canonical_examples", "url": 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"cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tmem106-pf07092.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07092", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tmem106-pf07092.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem106-n-pf21002.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21002", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem106-n-pf21002.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/6-20-20-10-6-20-20-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.20.20.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-20-20-10-6-20-20-10.yaml" } ], "pfam_ids": [ "PF07092", "PF21002" ], "protein_name": "Transmembrane protein 106A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKTFSQLGSWREDENKSILSSKPAIGSKAVNYSSTGSSKSFCSCVPCEGTADASFVTCPTCQGSGKIPQELEKQLVALIPYGDQRLKPKHTKLFVFLAVLICLVTSSFIVFFLFPRSVIVQPAGLNSSTVAFDEADIYLNITNILNISNGNYYPIMVTQLTLEVLHLSLVVGQVSNNLLLHIGPLASEQMFYAVATKIRDENTYKICTWLEIKVHHVLLHIQGTLTCSYLSHSEQLVFQSYEYVDCRGNASVPHQLTPHPP", "sequence_length": 262, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5e84dd47834fe633acad608646968c7aec516c550e482b1331b4b5636f3f3ce2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96A25.json", "taxon_id": "9606", "uniprot_accession": "Q96A25", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transmembrane-protein-106-c-terminal-domain-ipr048509.yaml", "qualification_status": 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"canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tmem106-pf07092.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07092", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tmem106-pf07092.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem106-n-pf21002.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21002", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem106-n-pf21002.yaml" } ], "pfam_ids": [ "PF07092", "PF21002" ], "protein_name": "Transmembrane protein 106C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVSTYVTTNVSLIPPRSEQLVNFTGKAEMGGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDCGGNSTAI", "sequence_length": 250, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e8bf5673e1f0150b67ef6a196fd7f617a8874b9150171a0cef9c9fe78921cab3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BVX2.json", "taxon_id": "9606", "uniprot_accession": "Q9BVX2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem106-n-pf21002.yaml" } ], "pfam_ids": [ "PF07092", "PF21002" ], "protein_name": "Transmembrane protein 106B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKSLSHLPLHSSKEDAYDGVTSENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNITIIGPLDMKQIDYTVPTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTTYQLGQSEYLNVLQPQQ", "sequence_length": 274, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "edd681f6f89e0829d3ec2f6df2d978fe54f1ae46b1f420b9bcc826764b9dbda5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NUM4.json", "taxon_id": "9606", "uniprot_accession": "Q9NUM4", "uniprot_release": "2026_03" } ], "pfam_id": "PF07092", "short_name": "TMEM106", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07094", "short_name": "DUF1357", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1358-pf07096.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07096", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1358-pf07096.yaml" } ], "pfam_ids": [ "PF07096" ], "protein_name": "Transmembrane protein 242", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVEQASASGAVSDIVEDDKSHLIKGGAFLATVATAGMIAGFGATLAVAKKKSPDWFNKGIIGSAAVPESGASLALRALGWGSLYAWCGVGLLSLTIWKAMGVHSLQEFRQKMQSIFPAIPKNEDAQANSVPFDWNSIFKSK", "sequence_length": 142, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc9a0eb4622dcdc68e4bcfc441139192eb11230c437b5218bf184d952754a143", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q4V8S3.json", "taxon_id": "7955", "uniprot_accession": "Q4V8S3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1358-pf07096.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07096", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1358-pf07096.yaml" } ], "pfam_ids": [ "PF07096" ], "protein_name": "Transmembrane protein 242", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METSGPGPGESSELEAPGSPDDRLFLVKGGIFLGSAAAAGMLAGFVTTLSLAKKKSPEWFNKGTMATAALPESGSSLALRALGWGSLYAWCGVGVISFAVWKALGVHSMKDFRSKMQSIFPPIPKNHESAEEWEEVLKWK", "sequence_length": 140, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c2a74776f373a695a285376caa84ae7e1881b46b83c17e0a8ad6f3aa863fb295", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VCR3.json", "taxon_id": "10090", "uniprot_accession": "Q8VCR3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1358-pf07096.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07096", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1358-pf07096.yaml" } ], "pfam_ids": [ "PF07096" ], "protein_name": "Transmembrane protein 242", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METAGAATGQPASGLEAPGSTNDRLFLVKGGIFLGTVAAAGMLAGFITTLSLAKKKSPEWFNKGSMATAALPESGSSLALRALGWGSLYAWCGVGVISFAVWKALGVHSMNDFRSKMQSIFPTIPKNSESAVEWEETLKSK", "sequence_length": 141, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1d4221f443f857599d5ad0f2f1dbb3089724f764a673ac841edec42ab0420c7b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NWH2.json", "taxon_id": "9606", "uniprot_accession": "Q9NWH2", "uniprot_release": "2026_03" } ], "pfam_id": "PF07096", "short_name": "DUF1358", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07097", "short_name": "DUF1359", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1360-pf07098.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07098", "section": "canonical_examples", "url": 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"NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07104", "short_name": "DUF1366", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07105", "short_name": "DUF1367", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07112", "short_name": "DUF1368", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem126-pf07114.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07114", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem126-pf07114.yaml" } ], "pfam_ids": [ "PF07114" ], "protein_name": "Complex I assembly factor TMEM126B, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVFGYEAGTKPRDSGVVPVGTEEAPKVFKMAASMHGQPSPSLEDAKLRRPMVIEIIEKNFDYLRKEMTQNIYQMATFGTTAGFSGIFSNFLFRRCFKVKHDALKTYASLATLPFLSTVVTDKLFVIDALYSDNISKENCVFRSSLIGIVCGVFYPSSLAFTKNGRLATKYHTVPLPPKGRVLIHWMTLCQTQMKLMAIPLVFQIMFGILNGLYHYAVFEETLEKTIHEE", "sequence_length": 230, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "16b6e887222cc7fc9fac569c56b449cbba8066218bed4fc91ca5089af3396082", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IUX1.json", "taxon_id": "9606", "uniprot_accession": "Q8IUX1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem126-pf07114.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07114", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem126-pf07114.yaml" } ], "pfam_ids": [ "PF07114" ], "protein_name": "Complex I assembly factor TMEM126B, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAASQRPSWSESKVAGVVQEGNREAPQDIKMALYKHGQLIPSLGDAKFRSPIISEIIEKKFEHYRNDKTLNIHGTLVFGTSSSLSGIMANLVFRNSFKVKYEALKTYASLTTLPVLATIVSYKLFVTDALQSGDISKESCVLRSALIGMACGVSYPSALAFYKNGRLAVKYQTVPLPPKGRVMLHWLLLCQTGMKAMAIPLFFQIVMGAFTGLHHYNICEKPRARLVPDD", "sequence_length": 230, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "482f99a5eac673e0fb21ea3e8b575cded49427d1bf818d6733cfc7c1ea4746ba", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D1R1.json", "taxon_id": "10090", "uniprot_accession": "Q9D1R1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem126-pf07114.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07114", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem126-pf07114.yaml" } ], "pfam_ids": [ "PF07114" ], "protein_name": "Transmembrane protein 126A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESHKPSTSKDDLILNIISRKIKQLPESDRNLLEYGSAYIGLNAAFGGLIANSLFRRILNVTQARLASSLPMAVIPFLTANLSYQSLVSLPLSTGDLNCETCTTTRGALVGLVMGGLYPILLAIPVNGGLAARYESSPLPQRGNIFNYWITVSKPVFRKMLFPTLLQTVFASYLGSRQYKLLIKALQLPEPDLEIH", "sequence_length": 196, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7d6dd2996db5fc4737e63400b7eedd290498008366b6503de9a4ad32749e3bb1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D8Y1.json", "taxon_id": "10090", "uniprot_accession": "Q9D8Y1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem126-pf07114.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07114", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem126-pf07114.yaml" } ], "pfam_ids": [ "PF07114" ], "protein_name": "Transmembrane protein 126A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENHKSNNKENITIVDISRKINQLPEAERNLLENGSVYVGLNAALCGLIANSLFRRILNVTKARIAAGLPMAGIPFLTTDLTYRCFVSFPLNTGDLDCETCTITRSGLTGLVIGGLYPVFLAIPVNGGLAARYQSALLPHKGNILSYWIRTSKPVFRKMLFPILLQTMFSAYLGSEQYKLLIKALQLSEPGKEIH", "sequence_length": 195, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5d21efbbd21daaca80b5aeed2611e2e6001158432acc6a7c78c1c471e1f2b8bf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H061.json", "taxon_id": "9606", "uniprot_accession": "Q9H061", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem126-pf07114.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07114", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem126-pf07114.yaml" } ], "pfam_ids": [ "PF07114" ], "protein_name": "Transmembrane protein 126", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALSRAKPDELPRDAVVITEDQALKYQWKIITSWDKIGEVWSLRYTPGILSALAAGTGAYINNHYRTKLRLGGHGRLSTYLPIVAVPAIFTMLAHKFFIQRPILLNPLGECPVCIQMRSAAFQTSLGIVYPTILAPFAAFLFATRCYTYRIPSITENPREVFLLWRKFTRPIVPALGTLIGLQALLTMFLTGQEDKQNFKLMLRMREIEHQVEEEHLPQRMDF", "sequence_length": 223, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "348e261d0e928244343eb91071c92f465eb86fcf296f8991e3baaa5305428ff0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VLM7.json", "taxon_id": "7227", "uniprot_accession": "Q9VLM7", "uniprot_release": "2026_03" } ], "pfam_id": "PF07114", "short_name": "TMEM126", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07116", "short_name": "DUF1372", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07117", "short_name": "DUF1373", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acidianus filamentous virus 1 (isolate United States/Yellowstone)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1374-pf07118.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1374-pf07118.yaml" } ], "pfam_ids": [ "PF07118" ], "protein_name": "Uncharacterized protein ORF99", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTHEFHKLLIKVVDLFLEDRIKEFELKLNTTLDELEFEELIGKPDSSNSAENNGIFIDEYSYDASENAIKKLFVEYVRQPEFKYTVLSIKGVNDWVRE", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c50f087967e1042a3c3e66dd13dc61af845123582c1f3a83e6e01d98dd3b39df", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q70LE8.json", "taxon_id": "654909", "uniprot_accession": "Q70LE8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sulfolobus islandicus rod-shaped virus 1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1374-pf07118.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07118", "section": "canonical_examples", "url": 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"mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1374-pf07118.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1374-pf07118.yaml" } ], "pfam_ids": [ "PF07118" ], "protein_name": "Uncharacterized protein 102", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEFEDLDVVLYVFFENPEMKSFEFEFKQLFETTESGLRYLIGVPDSRNKIKNNNEIIEEFIYYQNDDIVTKLIFYYTKGTNRIYIRKIYGWKEKRLESEDEE", "sequence_length": 102, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4f511b59b861fbd522218043207a4836399877d7b46c1c5c0db65bc810062410", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8QL51.json", "taxon_id": "157898", "uniprot_accession": "Q8QL51", "uniprot_release": "2026_03" } ], "pfam_id": "PF07118", "short_name": "DUF1374", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/ycek-yidq-family-lipoprotein-nf007555.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007555", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/ycek-yidq-family-lipoprotein-nf007555.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], 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"https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b38d7c25501dcb8165b083bded1e2ec0337adfb4d9d86d838118a5394319ac98", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MIRNVLLAFMICSGMTLLGGCSSVMSHTGGKEGTYPGTRASATMIGDDETNWGTKSLAILDMPFTAVMDTLLLPWDVFRKDSSVRSRVEKSEANAQATNAVIPPARMPDN", "sequence_length": 110, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b38d7c25501dcb8165b083bded1e2ec0337adfb4d9d86d838118a5394319ac98", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADM4.json", "taxon_id": "83333", "uniprot_accession": "P0ADM4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1375-pf07119.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07119", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1375-pf07119.yaml" } ], "pfam_ids": [ "PF07119" ], "protein_name": "Uncharacterized protein YidQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIRNVLLAFMICSGMTLLGGCSSVMSHTGGKEGTYPGTRASATMIGDDETNWGTKSLAILDMPFTAVMDTLLLPWDVFRKDSSVRSRVEKSEANAQATNAVIPPARMPDN", "sequence_length": 110, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b38d7c25501dcb8165b083bded1e2ec0337adfb4d9d86d838118a5394319ac98", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADM5.json", "taxon_id": "623", "uniprot_accession": "P0ADM5", "uniprot_release": "2026_03" } ], "pfam_id": "PF07119", "short_name": "DUF1375", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1376-ipr010781.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010781", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1376-ipr010781.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1376-pf07120.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07120", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1376-pf07120.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P76065", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07120", "PF29405" ], "protein_name": "Uncharacterized protein YdaU", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8896339ee65c7b5996f2ea194a00c626eff2bd21b430b12562b1ebcd3d73ace9", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLFVLILSHRAASYGAIMAALPYMQLYIADYLADTMHLSAEEHGAYLLLMFNYWQTGKPIPKNRLAKIARLTNERWADVEPSLQEFFCDNGEEWVHLRIEEDLASVREKLTKKSAAGKASVQARRSRKEADVQTKQERNLTGVQTDVEVVFEHDVNTKATNKDTDKDLKTDPPLNPPRGNRGVKKFDPLDITLPNWISVSLWREWVEFRQALRKPIRTEQGANGAIRELEKFRQQGFSPEQVIRHSIANEYQGLFAPKGVRPETLLRQVNTVSLPDSAIPPGFRG", "sequence_length": 285, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8896339ee65c7b5996f2ea194a00c626eff2bd21b430b12562b1ebcd3d73ace9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76065.json", "taxon_id": "83333", "uniprot_accession": "P76065", "uniprot_release": "2026_03" } ], "pfam_id": "PF07120", "short_name": "DUF1376", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07125", "short_name": "DUF1378", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cell-division-protein-zapc-c-terminal-ipr048372.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cell-division-protein-zapc-c-terminal-ipr048372.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cell-division-protein-zapc-n-terminal-ipr048373.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048373", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cell-division-protein-zapc-n-terminal-ipr048373.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zapc-c-pf07126.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07126", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zapc-c-pf07126.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zapc-n-pf21083.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21083", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zapc-n-pf21083.yaml" } ], "pfam_ids": [ "PF07126", "PF21083" ], "protein_name": "Cell division protein ZapC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRIKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFARKMLTPDAFSPAGFCVDDAALYFSFEEKCRDFNLSKEQKAELVLNALVAIRYLKPQMPKSWHFVSHGEMWVPMPGDAACVWLSDTHEQVNLLVVESGENAALCLLAQPCVVIAGRAMQLGDAIKIMNDRLKPQVNVDSFSLEQAV", "sequence_length": 180, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f122f90d57fa44ddca88b85a33a497d961fe2c559c752f455ad1d32320531cb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P75862.json", "taxon_id": "83333", "uniprot_accession": "P75862", "uniprot_release": "2026_03" } ], "pfam_id": "PF07126", "short_name": "ZapC_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1380-pf07128.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07128", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1380-pf07128.yaml" } ], "pfam_ids": [ "PF07128" ], "protein_name": "Uncharacterized protein YubF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYGTCETLCRELAAKYPGYTPLMLVIWSPEEIQALADGMDISLSDPEIRTVLARLEDIPEDQRIESGISSAAAMEIISNVSENRQVTVPAELLASLIQTAEQALWKREWAARDYGLAVPECVTRRQAVVNQARILLKNNTHENG", "sequence_length": 144, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "22f057c5c66a97cb5c5cae865b499826e9f9a7367158bc3bf5f289878dacf964", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O82898.json", "taxon_id": "83334", "uniprot_accession": "O82898", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1380-pf07128.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07128", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1380-pf07128.yaml" } ], "pfam_ids": [ "PF07128" ], "protein_name": "Uncharacterized protein YubF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYGTCETLCRELAAKYPGYTPLMLVIWSPEEIQALADGMDISLSDPEIRTVLARLEDIPEDQRIESGISSAAAMEIISNVSENRQVTVPAELLASLIQTAEQALWKREWAARDYGLAVPECVTRRQAVVNQARILLKNNTHENG", "sequence_length": 144, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "22f057c5c66a97cb5c5cae865b499826e9f9a7367158bc3bf5f289878dacf964", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9S4X0.json", "taxon_id": "83333", "uniprot_accession": "Q9S4X0", "uniprot_release": "2026_03" } ], "pfam_id": "PF07128", "short_name": "DUF1380", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07129", "short_name": "DUF1381", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07131", "short_name": "DUF1382", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/acmnpv-orf18-pf07134.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07134", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/acmnpv-orf18-pf07134.yaml" } ], "pfam_ids": [ "PF07134" ], "protein_name": "Putative early 40.3 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDRVASQIYSGALPYITTMDMEDRLRNRIAAKAGAKFFKACFEAVVADKSGLFVLSGGAATACHIGDDRNVLKCLDFDYYNATQEWLQLARLQQRLQACVQDNLEILSRLAQSVRMQDDLFVVKCFQNGAFCFNGPVQARLVPCVETVRTSFNGEFDLLRFALQVELKALNGVDEYVDQKVIVDRGAAVFNVFFVNIRAMKGPLTMERCVRTLAVFGDAYRVVVSPLQSVINDQIMCLLKDIFTDKPEFRVARPKALICALFAKLPREAYDECINSHHGAEPTRRRDETVTSFCRRTLHIHGPALGCRKLVYAYFKTDSFARQMPDYVANRAIYPHTDCEMKWKEFIHFFVVAKV", "sequence_length": 355, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5e90611152b3a118454b470b7e3e078e35ff50d87b8a145087795db50ad9b38d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10278.json", "taxon_id": "262177", "uniprot_accession": "O10278", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/acmnpv-orf18-pf07134.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07134", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/acmnpv-orf18-pf07134.yaml" } ], "pfam_ids": [ "PF07134" ], "protein_name": "Protein AC18", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAAVTCHIDDDRSALKCIDFDYYGFCAKMFCNLQTNLQKCVDQHYAELDVLTRQVYMSDPLVVLKCYQNGAYRLNGQINLHLNRHIKCIKTQYNDEFDLVRFALQIDITSADGVDEYTDNGVKITTAPLSFNVFFVNVRIMKRPFNADRCIKNFSLFGNEYHVLVSSLQRVLNDQLMCLLKDIFTNKFDYKIERRLKHLKRLFANLPAESYNSCVNDHTDMCLYKEQNETITNFVKKILDISGPALGCRKLMHIYLTTDTFSGQLPAYLTHYVNYPHKSLCDQNWKRFMSCIFSLY", "sequence_length": 353, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d0637bbbddac4bd43d99c4606299acf6468690459614ae49d80656bb50505eea", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P12828.json", "taxon_id": "46015", "uniprot_accession": "P12828", "uniprot_release": "2026_03" } ], "pfam_id": "PF07134", "short_name": "AcMNPV_Orf18", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1385-pf07136.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07136", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1385-pf07136.yaml" } ], "pfam_ids": [ "PF07136" ], "protein_name": "Uncharacterized protein YqhQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKHKVPPAYGGQAVVEGVMFGGKHHYVTAIRRTDGSIDFFKLPRKHNPKLNIVKKIPFLRGIAAIIEASANGTKHLNFSSERYGLDPSEDETLEQEEKKSSGLSMYLSLAVIGVLSFLFSKFVFTLVPVFLAELTRPIFSLNTAQIAIESLFKLILLLGYIYFLSMTPLIKRVFQYHGAEHKVINCYEQNLPITVENVQNQSRLHYRCGSSFILFTIIVGMFVYLLVPTDPLWLRVIDRVALIPVVLGISFEVLQLTNKVRDIPGLKLLGYPGLWLQLLTTKEPKDEQVEVAIESFNELLRLEALSEQNQKPSHNVI", "sequence_length": 318, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "702c5213adad0224f0c399f8519ba4c2baf0f8e92db3605dce9fbd41471d16b9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P54515.json", "taxon_id": "224308", "uniprot_accession": "P54515", "uniprot_release": "2026_03" } ], "pfam_id": "PF07136", "short_name": "DUF1385", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/acmnpv-ac11-pf07138.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07138", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/acmnpv-ac11-pf07138.yaml" } ], "pfam_ids": [ "PF07138" ], "protein_name": "Protein AC11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLAAKLIIYNYYAKYNEVHDVYGESYHHYRIVQEYLSESYVNGMSCIERDVTAMRRLKSGSCTFDEAVKMIDAGDSIKSLSHWFSTSETMGIDDNVREVLEQIDAVVPVSVRVQNGWQIFSLNNFEREISQDMLDCLQIILGRFEYFMRNGKLLRIANVFNPNNDVVGWWYNKFCVVTYVHRIMYRSVPAELVPRLSEAVKKFIRLRKSDYDDRLHVDESYNCPRVIAEMYGRFCGIGKEHFSKHKLSCMHILFQYLRGKTTQEEKSFPCYRVIKDFGRQCKDVYKNLKDVFDLLHAHSMSDKDKNSLMDLLCVMDCEEIDVDCFYYIFESFLNNKHLQ", "sequence_length": 340, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "db757e46f509200cbf2cf8b6723f11d04b76ba4db2c244d082913f3161df6989", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41421.json", "taxon_id": "46015", "uniprot_accession": "P41421", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/acmnpv-ac11-pf07138.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07138", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/acmnpv-ac11-pf07138.yaml" } ], "pfam_ids": [ "PF07138" ], "protein_name": "Uncharacterized 37.2 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLSSKLLVYAYYGSYNLPHDRYGESYHLYRIVHEHLTNTYVSNASCVRRDIATARCLNSGHLCFDVARQLLDVSEVAARLSAWFRCGDATGLCADMQRALADIDRHAPLARRVGRRANIFALDAIADIPSDVTNNLQGIIGRFMHFPRCSGLARVADVFDPDIRADGWWYHKFCVLTYMHLVACGAVPAGSATRLRDAVAKHIGPNDEGNCAPAIAAVYGRFCAIGREHFAHHKTACMHILFQFMRNDLTPADERHPCFGVIKDFGRQCKDTYTDLRTHADALYIHGTTDRQKNALFDLLCCVNASDIDADCYDCVVNKFYATQNKKYKM", "sequence_length": 331, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "920bfed91ba015143f32aa9072d835c539e2c5a9799366830128282a24d4eb80", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q65359.json", "taxon_id": "262177", "uniprot_accession": "Q65359", "uniprot_release": "2026_03" } ], "pfam_id": "PF07138", "short_name": "AcMNPV_AC11", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spats2-like-pf07139.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07139", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spats2-like-pf07139.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/uba-like-superfamily-ipr009060.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009060", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/uba-like-superfamily-ipr009060.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q86XZ4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07139" ], "protein_name": "Spermatogenesis-associated serine-rich protein 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "46365505a24087a8245db003d91a36795ff7b34618bf9b32fa64c4ac968db105", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSRKQNQKDSSGFIFDLQSNTVLAQGGAFENMKEKINAVRAIVPNKSNNEIILVLQHFDNCVDKTVQAFMEGSASEVLKEWTVTGKKKNKKKKNKPKPAAEPSNGIPDSSKSVSIQEEQSAPSSEKGGMNGYHVNGAINDTESVDSLSEGLETLSIDARELEDPESAMLDTLDRTGSMLQNGVSDFETKSLTMHSIHNSQQPRNAAKSLSRPTTETQFSNMGMEDVPLATSKKLSSNIEKSVKDLQRCTVSLARYRVVVKEEMDASIKKMKQAFAELESCLMDREVALLAEMDKVKAEAMEILLSRQKKAELLKKMTHVAVQMSEQQLVELRADIKHFVSERKYDEDLGRVARFTCDVETLKKSIDSFGQVSHPKNSYSTRSRCSSVTSVSLSSPSDASAASSSTCASPPSLTSANKKNFAPGETPAAIANSSGQPYQPLREVLPGNRRGGQGYRPQGQKSNDPMNQGRHDSMGRYRNSSWYSSGSRYQSAPSQAPGNTIERGQTHSAGTNGTGVSMEPSPPTPSFKKGLPQRKPRTSQTEAVNS", "sequence_length": 545, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "46365505a24087a8245db003d91a36795ff7b34618bf9b32fa64c4ac968db105", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q86XZ4.json", "taxon_id": "9606", "uniprot_accession": "Q86XZ4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spats2-like-pf07139.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07139", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spats2-like-pf07139.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/uba-like-superfamily-ipr009060.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009060", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/uba-like-superfamily-ipr009060.yaml" } ], "pfam_ids": [ "PF07139" ], "protein_name": "Spermatogenesis-associated serine-rich protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRKQSQKDSSGFIFDLQSNTVLAQGGTFENMKEKINAVRAIVPNKSNNEIILVLQHFDNCVDKTVQAFMEGSASEVLKEWIVTGKKKNKKKKSKPKPASEASGSAPDSSKSAPIQEEQPASSEKGSINGYHVNGAINDAESVDSLSEGLETLSIDARELEDPEFAAAETLDRTGSVLENGVSDFEPKSLTAHSISNVQQSRNAAKSLSRTTPGAQVSNLGMENVPLSSTNKKLGSNIEKSVKDLQRCTVSLARYRVVVKEEMDASIKKMKQAFAELQSCLMDREVALLAEMDKVKAEAMEILLSRQKKAELLKKMTDVAVRMSEEQLVELRADIKHFVSERKYDEDLGRVARFTCDVETLKQSIDSFGQVSHPKNSYSTRSRCSLVAPVSLSGPSDGSAASSSPDASVPSLPGANKRNCAPREASAAMTNSSDRPCQAHREVFPGNRRGGQGYRAQSQKTADPSNPGRHDSVGRYRNSSWYSSGPRYQGVPPQAPGNAGERSRPYSAGTNGTGAISEPSPPKPSFKKGLPQRKPRASQAEAANS", "sequence_length": 545, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1571f28c05edd58738e89f9eb5d250dc38119a3d1cc922f3618187dcdd73281c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8K1N4.json", "taxon_id": "10090", "uniprot_accession": "Q8K1N4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spats2-like-pf07139.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07139", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spats2-like-pf07139.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/uba-like-superfamily-ipr009060.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009060", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/uba-like-superfamily-ipr009060.yaml" } ], "pfam_ids": [ "PF07139" ], "protein_name": "SPATS2-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAELNTHVNIKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWNMTGKKKNNKRKRSKSKQHQGNKDAKDKVERPEVGPLQPQAPLVQNGHMNGCEKDSSSPDSTREKLALTPREKKISILEEPPRAQRGVTEGGRLLQQKMSLDGNPRAIHGPSERSDGPQWSAGQPCNPSKPKAKTSPVKSNAPAAHLEIKPDELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKEEAMDILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQILICGEITHPKNSYSSRTPCSSLLPLLNTHAVASGKQGNFARKSSGHNKPSEGKAANPKMVSGLANTADACHQTMPTNKQQNGPSSQRRRFNPQYHNRLNGPAKSQGGGNEADPMAKSNSRHEHRRQPHNGFRPKNKGGAKNQEAPLGTKAPEAPPHSEKARRRQHAADNLEARPFRGNVSRVSQCNLCPSRIEVSTEATVLSVPAVTLVA", "sequence_length": 558, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b380b7d0d183ff99dac64989382dad237466320595de2efa1d24ba29e0c7b398", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q91WJ7.json", "taxon_id": "10090", "uniprot_accession": "Q91WJ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spats2-like-pf07139.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07139", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spats2-like-pf07139.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/uba-like-superfamily-ipr009060.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009060", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/uba-like-superfamily-ipr009060.yaml" } ], "pfam_ids": [ "PF07139" ], "protein_name": "SPATS2-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAELNTHVNVKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWNMTGKKKNNKRKRSKSKQHQGNKDAKDKVERPEAGPLQPQPPQIQNGPMNGCEKDSSSTDSANEKPALIPREKKISILEEPSKALRGVTEGNRLLQQKLSLDGNPKPIHGTTERSDGLQWSAEQPCNPSKPKAKTSPVKSNTPAAHLEIKPDELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKEEAMEILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQIMLCGEITHPKNNYSSRTPCSSLLPLLNAHAATSGKQSNFSRKSSTHNKPSEGKAANPKMVSSLPSTADPSHQTMPANKQNGSSNQRRRFNPQYHNNRLNGPAKSQGSGNEAEPLGKGNSRHEHRRQPHNGFRPKNKGGAKNQEASLGMKTPEAPAHSEKPRRRQHAADTSEARPFRGSVGRVSQCNLCPTRIEVSTDAAVLSVPAVTLVA", "sequence_length": 558, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fdacf27e72d70a1909df370fc8e4bd1939c0ae50c180bdee8cdc2fcf3089f0a6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NUQ6.json", "taxon_id": "9606", "uniprot_accession": "Q9NUQ6", "uniprot_release": "2026_03" } ], "pfam_id": "PF07139", "short_name": "SPATS2-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/neurofibrillary-tangle-go0097418.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097418", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/neurofibrillary-tangle-go0097418.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/postsynaptic-intermediate-filament-cytoskeleton-go0099160.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0099160", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/postsynaptic-intermediate-filament-cytoskeleton-go0099160.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/structural-constituent-of-postsynaptic-intermediate-filament-cytoskeleton-go0099184.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0099184", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/structural-constituent-of-postsynaptic-intermediate-filament-cytoskeleton-go0099184.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/neurofilament-bundle-assembly-go0033693.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0033693", "section": "canonical_examples", "url": 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"data/traits/sequence/repeat/pfam/duf1388-pf07142.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF07142", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf1388-pf07142.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P12036", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00038", "PF07142" ], "protein_name": "Neurofilament heavy polypeptide", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": 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"724fd805949cb3520f65f994a6ce8faf12f097e8d2b245cf467b226a0902d9c8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ACW8.json", "taxon_id": "83333", "uniprot_accession": "P0ACW8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1391-pf07151.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1391-pf07151.yaml" } ], "pfam_ids": [ "PF07151" ], "protein_name": "Uncharacterized protein YdfA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTIDLGNNESLVYGVFPNQDGTFTAMTYTKSKTFKTENGARRWLERNSGE", "sequence_length": 51, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "724fd805949cb3520f65f994a6ce8faf12f097e8d2b245cf467b226a0902d9c8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ACW9.json", "taxon_id": "83334", "uniprot_accession": "P0ACW9", "uniprot_release": "2026_03" } ], "pfam_id": "PF07151", "short_name": "DUF1391", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07154", "short_name": "DUF1392", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lactococcus lactis subsp. cremoris (strain MG1363)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ecf-ribofla-trs-pf07155.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07155", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ecf-ribofla-trs-pf07155.yaml" } ], "pfam_ids": [ "PF07155" ], "protein_name": "Thiamine precursor transporter HmpT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLMDNKNIKKLTLLAIWTALTFVLGRLFTFPIPGSAGNILTLLDVGIYTAVFLFGKREAAIIGGFAAFLLDLTAGFSNYMFFSLIIHGGQGYLAGLTRYKWLNFLLSLLVMVGGYFIVGGLMYGWGSAIAGLWVNIVQVIVGFVLAKVLSPLIERTGILNGFRKA", "sequence_length": 166, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9eddb529974c19ab3d90796602935ec43c07cfb28775042dec370d77a739504b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2RIH3.json", "taxon_id": "416870", "uniprot_accession": "A2RIH3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus mycoides (strain KBAB4)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ecf-ribofla-trs-pf07155.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07155", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ecf-ribofla-trs-pf07155.yaml" } ], "pfam_ids": [ "PF07155" ], "protein_name": "UPF0397 protein BcerKBAB4_2500", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKLTTKLVVAIGIGAALYGVLGLWGFSIAPNTFIKPALAILTVFGALFGPVAGLLIGLIGHTVTDTIAGWGIWWGWVISSGIIGLAMGLIQKRVGFSVKHGTYNNRDISYFTIAGLIGIVIAIIFAGSFDIIVMGEPFDKIVIQVLGATIADVIVFLVLGLPITIGLAKSNRKHTHLKIEK", "sequence_length": 182, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "24dc411925e21b034c5c99431476909be950fc76a91202ea15cbd60f53b79eb3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A9VHJ1.json", "taxon_id": "315730", "uniprot_accession": "A9VHJ1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus mutans serotype c (strain ATCC 700610 / UA159)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ecf-ribofla-trs-pf07155.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07155", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ecf-ribofla-trs-pf07155.yaml" } ], "pfam_ids": [ "PF07155" ], "protein_name": "Folate transporter FolT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTMFKSPKLSPQRLVTLAMLIALAFAIGKLSIPIIPQQLIISPTFIVNVMIGMIGGPIWAFISLAILDIVDNLSSGAGNFIIWWTLLEAVQGLFYGLFFYQKSLSWTNKKDWLHVTIATAIIMLIGSFIFTPLLVQIYYGVPFWAQFAAGRWLKIFEIPIRILVTMAIMPQLQRIPELRKLANFK", "sequence_length": 186, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7e1aad11123dc6ee6a0fe49b6d890fca5d72435ad64981b411640b741140e8a8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8DV98.json", "taxon_id": "210007", "uniprot_accession": "Q8DV98", "uniprot_release": "2026_03" } ], "pfam_id": "PF07155", "short_name": "ECF-ribofla_trS", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 9, "discovery_scanned": true, "example_count": 9, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/rna-7-methylguanosine-cap-binding-go0000340.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000340", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/rna-7-methylguanosine-cap-binding-go0000340.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/embryonic-body-morphogenesis-go0010172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/embryonic-body-morphogenesis-go0010172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-clathrin-dependent-endocytosis-go2000370.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000370", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-clathrin-dependent-endocytosis-go2000370.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-egg-laying-behavior-go1901046.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1901046", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-egg-laying-behavior-go1901046.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cyria-cyrib-rac1-binding-domain-ipr009828.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009828", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cyria-cyrib-rac1-binding-domain-ipr009828.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O44518", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05994", "PF07159" ], "protein_name": "Cytoplasmic FMR1-interacting protein homolog", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e59d71441716e9da3c24cf63f7c46c2eece1ecb8d11b237ebee5e6fd616de87e", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNANVTVDDAISNVNLLDTLAIPDDLPDIEARALPLLYRSNFDTNFEDRSAFVTGIAKYSEEATRHAQFNDMLSEGLQHAANMYTWRCCSRAVPMAKSNDQPNRTEINEMVVEVLKPEVSKLGSFMRFTLTAIQRFCEEVRRLCHSEKRRDFVSEAYLLTLGRFINMFAVLDELKNMKASIKNDFSTFRRASQFLTAMSDTQAVHDMQNLSMFLATQNKIKDDLKLQMKTIEGYEELLCDVVNICAHMYEHQLYLSPNEKHMFVKVIAFSLFLMDGDAANVAKLDQKKRLSISRLDKIFKTLEVVPLYGDMQIQPFAFVRRSSHYEPSKWPLSDKESDRCHVNIVEKVQSIRSDHESYVTQFAKINNEVAICDRPGNDSENREITSLALSGIQLLCQWSCAVVETISWKLLNPTNPKDNRECPENAEEYERATRYNYSPAEKTALIQIIAMIKGLQSMLGKTESDMSNSTRKCVYVELQAFIHHTINEPLQKAVKHKKDLLASILQSVKDSISDAGNELNRMTDVKGKKKSSAPKGDSANSSSSDIRIPRRTAAPGSTQLYMARTQLESLISDKLCGGKKILRKELDSKTIEKISVFLRKSAHWPALFRLSDSMTEAGELSQLWFREFYLEMTMGQRIQFPIEMSMPWILTDYILSCNEPSLIESALYQLDLYNDAAQYSLFNFNKQFLYDEVEAEVNLCFDQFVYKLSEMVFTHYKQLASCMLLDKRFKAEILRSGTMIRSPSAARFESLLQQRHVQLLGRSVDLNRVVSQRVNMALLKALDAAIWKFESEPLSSIVELDMLIDTNRLCHTLLSDVLHSIAPFDDLFQEANHAVNSPHGRITLHVFWELNYDFVPNFVYNGSTHRFVRARHVFRKTPAREKPPQVGQVYYWGSKSLMAAFMNICNAYSQCIGTQHLKAITRLLHYQGIAVILDELLKMTNRLLNDKIRRHVRNVFNMMPKVCKLPRSDYGSNALLQYYVHHLEAVGKYPELKSEFCQDLRELGNMIVFCQQLEVALGQEEAHDLFLAAAYTGTVPQPPARNAQEQMKQLAKLEDKYSRIHLTEIIDKISPDDGQAAIAKDAELMTKERLCCGLNAFENFLVRIKQMLAADDIWTGGYPTNGVFWIDECVEWYRVYSALQFFLCQPTRDDNEVYAEELFGDSLQWGGLTLITLLGQHRRFEVLDFCYHLHRVNKADGKDEVISGIRLAKMVERIRRFQLLNNQIFIILENQLNENNDDPNERVREFAPPVHPNYANHAARRQ", "sequence_length": 1262, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e59d71441716e9da3c24cf63f7c46c2eece1ecb8d11b237ebee5e6fd616de87e", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/O44518.json", "taxon_id": "6239", "uniprot_accession": "O44518", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cyria-cyrib-rac1-binding-domain-ipr009828.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009828", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cyria-cyrib-rac1-binding-domain-ipr009828.yaml" } ], "pfam_ids": [ "PF05994", "PF07159" ], "protein_name": "Protein PIR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVPVEEAIAALSTFSLEDEQPEVQGPAVMVSAERAATDSPIEYSDVAAYRLSLSEDTKALNQLNTLIQEGKEMASILYTYRSCVKALPQLPESMKHSQADLYLETYQVLDLEMSRLREIQRWQSSASAKLAADMQRFSRPERRINGPTVTHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSAQWQDTDTMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFIVESLELDFALLFPERYILLRVLPVLVVLATPSEKDTEALYKRVKLNRLINIFKNDPVIPAFPDLHLSPAAILKELSVYFQKFSSQTRLLTLPAPHELPPREALEYQRHYLIVNHIGALRAEHDDFTIRFASSMNQLLLLKSNDGAYTEWCREVKGNMYDMVVEGFQLLSRWTARIWEQCAWKFSRPCRDAGETPEASGSYSDYEKVVRFNYTAEERKALVELVGYIKSVGSMLQRCDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTRPEHEMPSSQHGNDESRGNFFYPRPVAPTAAQVHCLQFLIYEVVSGGNLRRPGGFFGNNGSEIPVNDLKQLETFFYKLSFFLHILDYSASIGILTDLGFLWFREFYLESSRVIQFPIECSLPWMLIDYILEAQNSGLLESVLLPFDIYNDSAQQALVVLRQRFLYDEIEAEVDHGFDIFVSRLSESIFTYYKSWSASELLDPSFLFALDNGEKFSIQPVRFTALFKMTKVKILGRTINLRSLIAQRMNRIFRENLEFLFDRFESQDLCAVVELEKLIDILKHSHELLSQDLSIDPFSLMLNEMQENISLVSFSSRLATQIWSEMQSDFLPNFILCNTTQRFVRSSKVPPTQKPSVPSAKPSFYCGTQDLNAAHQSFARLHSGFFGIPHLFSIVKLLGSRSLPWLIRALLDHISNKITTLEPMISGLQEALPKSIGLLSFDGGVTGCMKLIREQLNWGTKSELKSEVLRGIKEIGSVIYTMGLLDIVLREVDTKRFMQTAPWLGLIPGAEGQIVNAQDGESPLVNLLKSATSAVVSSPGCLNPAAFYTMSKQAEAADLLYKANMNGGSVLEYTLAFTSASLDKYCSKWSAPPKTGFVDITTSKDFYRIYGGLQIGYLEEITAPQSAQHEVLGDSIAWGGCTIIYLLGQQLHFELFDFSYQVLNVSEVETVSASHTHRNPQIHQGWEGLLEGMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLPRVRFENTVSAFETLPQKGTVG", "sequence_length": 1282, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e8a450b4308a5fbd0f176578c0f281496c1e1541df04d7ca4cb69b103f7ea3d0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5S2C3.json", "taxon_id": "3702", "uniprot_accession": "Q5S2C3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyostelium discoideum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fragx-ip-pf05994.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05994", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fragx-ip-pf05994.yaml" } ], "pfam_ids": [ "PF05994", "PF07159" ], "protein_name": "Protein pirA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVDPKQSKIADVFERCDVLESFPFHDDQSEIEEQSPSIGYDAYDKSLNYTDRGAYETQWSEETIGMEKMEEVLKQGDSFINMVYTYRSCSKALPTVKTAEQVNKTQIYEGNFEVLEPEIKKLKDFMYFQKDTIKLFCDHIKKLASTYDKKKETISASESFINYLVRILDLLAILDALKNMKACLNNDFSFFKRATGFLRKQMSGTEDQTQENHTLYLFLANQNSITSSLKLELHNIDKFDDILPMIVNQCADYLEQEKYILPSEKHCLLRVMPFVLFLIDENDSKHNINKNKNLNISRYAKIFKKNPVVPLYGDMQITLESLVKRSPHFDEKAWGTSTLDSKSALDYEIIHVLDQTRSLYNEYMARFANMVNEIRAAKARGPKEPLPLAESDIQAITLMGLRILSDWTSRVLQQSAWKYSKPNNDPTISATFDYERVVKFNYTKEERTALVQLIAMIKSLASLMMKSETLLQPILRKTIHQELQEFVQINLKETIKSFVKNNPKKKDNIKLEMSQLKNISVDWFSGFEPAEAVPNKKSKEVEEKVQIPARAVPPSPTQLELILTLVSSLMDKKKDFSSDQYRDFEAFSSKAFFYRYLLSLSSSIISITDLADLWYREFYLELNNRVQFPIETSLPWILTDHILESDDPSLIEHLFYPLGLYNDTAQRALLSLNQRFLYDEIEAELNLCFDQLLYKLSGKVYTHFKTQASSILLDKPYKTQLELAHFNGKLHTPKSRFDVLLRQKHITLLGRSIDLCGLLAQRQNNTIRQNLDYAISRFEACDLTSIVELETQIANIKLTHKLLSEYFDIDPFESIFNEINESTSLVSYHGRIVLHIIFELVADFAPNYTFNSITQRFIKAPYTFTEELKRDALPKTNPVFLFGNKYLNAAYANSIELYKNFIGVPHIQSILRIVGKKNLPLIVAEVLRNIEIKITNVLSPYVSELLQGMPASTKLPIYDYGTEGGYGYFQLKLKDIYIYPDLRPEVLQTFRELGNSLVFMNLLDQVITQTDSYNFAKAAPFLGITPETWKDLEPSTEDPTLQSPLYSQLQKLAQLLESRPEVAKSSQSLNDMVANAWRADKFYRPSEQNFSLFKSVLQRFSSILNIVRHDWSGAPPDNGVICVDSSTEFYRLWSALQFVICWPLSNENDKSFHELFGDGLMWAGCSLIHFLGQQYRFELFDFCYHILNVEEAAAVRSDKPALKNFFKNAQIIKDINNQIFSILNTYCPPPPPSNMILSPPATEQAEQFIVTTTVEEQSIQQQQQQQQQQQLQQSTSNSGSSLSLSAAGAPPPPPPPSTNGLPPPPPMAEYEMSSSIDDFAPPPPPPFGMPPPPPM", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1425-pf07233.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/ycfl-like-superfamily-ipr038483.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038483", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/ycfl-like-superfamily-ipr038483.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-60-40-3230-2-60-40-3230.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.60.40.3230", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-60-40-3230-2-60-40-3230.yaml" } ], "pfam_ids": [ "PF07233" ], "protein_name": "Uncharacterized protein YcfL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKGCFGLVSLVLLLLVGCRSHPEIPVNDEQSLVMESSLLAAGISAEKPFLSTSDIQPSASSTLYNERQEPVTVHYRFYWYDARGLEMHPLERPRSVTIPAHSAVTLYGSANFLGAHKVRLYLYL", "sequence_length": 125, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4804e6cb6d19a4f556dc425b399c930a148ddc4785262d3d97f5315f0c38d18e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75946.json", "taxon_id": "83333", "uniprot_accession": "P75946", "uniprot_release": "2026_03" } ], "pfam_id": "PF07233", "short_name": "DUF1425", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Banana bunchy top virus (isolate Autralia)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/babuvirus-mp-pf07234.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07234", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/babuvirus-mp-pf07234.yaml" } ], "pfam_ids": [ "PF07234" ], "protein_name": "Movement and RNA silencing protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALTTERVKLFFEWFLFFGAIFIAITILYILLVLLFEVPRYIKELVRCLVEYLTRRRVWMQRTQLTEATGDVEIGRGIVEDRRDQEPAVIPHVSQVIPSQPNRRDDQGRRGNAGPMF", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0ca90b672e35d0b9a3acfd63af63514661396be1ff93dac13492eaad7a80b473", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q65387.json", "taxon_id": "645099", "uniprot_accession": "Q65387", "uniprot_release": "2026_03" } ], "pfam_id": "PF07234", "short_name": "Babuvirus_MP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07235", "short_name": "DUF1427", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1428-pf07237.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1428-pf07237.yaml" } ], "pfam_ids": [ "PF07237" ], "protein_name": "Uncharacterized protein YbaA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7c79d0a1dd84b07be7bcb840f866df2c4063a833d3186aed452e970d71b81235", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAQ6.json", "taxon_id": "83333", "uniprot_accession": "P0AAQ6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1428-pf07237.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1428-pf07237.yaml" } ], "pfam_ids": [ "PF07237" ], "protein_name": "Uncharacterized protein YbaA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7c79d0a1dd84b07be7bcb840f866df2c4063a833d3186aed452e970d71b81235", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAQ8.json", "taxon_id": "83334", "uniprot_accession": "P0AAQ8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1428-pf07237.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1428-pf07237.yaml" } ], "pfam_ids": [ "PF07237" ], "protein_name": "Uncharacterized protein YbaA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7c79d0a1dd84b07be7bcb840f866df2c4063a833d3186aed452e970d71b81235", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAQ9.json", "taxon_id": "623", "uniprot_accession": "P0AAQ9", "uniprot_release": "2026_03" } ], "pfam_id": "PF07237", "short_name": "DUF1428", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07242", "short_name": "DUF1430", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07248", "short_name": "DUF1431", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07252", "short_name": "DUF1433", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Prodigiosinella confusarubida", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cpta-toxin-pf07254.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cpta-toxin-pf07254.yaml" } ], "pfam_ids": [ "PF07254" ], "protein_name": "Inner membrane protein YgfX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVQWQCNLRVSWRMQLFSLLAHGLLVLLILLAPWPDGYMSVWLGLVTLVMFGFIRSQRNIKSRHGEIVLYNENHLRWQHREWQITKRPWVLKNGILLSLRTTEGKGPRRRSLWLASDSMRNEEWRHLCHLLLQHKNWQSDRLM", "sequence_length": 143, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f8021430ac6eef9a5f0b103048f8bce46c4862240a56f7caa641b55c617ca6e6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G4V4G3.json", "taxon_id": "104623", "uniprot_accession": "G4V4G3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cpta-toxin-pf07254.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cpta-toxin-pf07254.yaml" } ], "pfam_ids": [ "PF07254" ], "protein_name": "Inner membrane protein YgfX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQEWSIVKAPWMIKSGMMLRLRSDGGKRQHLWLAADSMDEAEWRDLRRILLQQETQR", "sequence_length": 135, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ec011d05e47d10859b9e9f685bf0feada82b1fa5744af0d154faaa38b0e7409d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q46824.json", "taxon_id": "83333", "uniprot_accession": "Q46824", "uniprot_release": "2026_03" } ], "pfam_id": "PF07254", "short_name": "Cpta_toxin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1435-pf07256.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07256", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1435-pf07256.yaml" } ], "pfam_ids": [ "PF07256" ], "protein_name": "Uncharacterized protein YjjZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPSCLALIAGIMLMIMNLNQG", "sequence_length": 78, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "136dbda8245f0835ef7015adbecc2616f1ffef13b5f9b71d91b9b19b2e61ae0b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P55914.json", "taxon_id": "83333", "uniprot_accession": "P55914", "uniprot_release": "2026_03" } ], "pfam_id": "PF07256", "short_name": "DUF1435", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Yersinia pseudotuberculosis serotype O:3 (strain YPIII)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cdii-pf07262.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07262", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cdii-pf07262.yaml" } ], "pfam_ids": [ "PF07262" ], "protein_name": "Immunity protein CdiI-YPIII", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNDIVKSAWASVKMNTDFICVDTYSGYRSNQLDPLGVQHLSSPDVSDLDLGEMVKDALSHSRFVLPAPRTDIWIHPEVTFDLDLYDSRRTVERYDEWVKKLMVHYGYKTKRALFKDMKSCDICCNHDAITISPTRHEKLEVWGGTGLKGSDNVILSVDSSPTEIGAGLRLALSRCKG", "sequence_length": 177, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ae9e2f764cfa68582c526c50be169a1e0c9f010d134983068532518da8e646d9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0R4I987.json", "taxon_id": "502800", "uniprot_accession": "A0A0R4I987", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7 (strain EC869)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cdii-pf07262.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07262", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cdii-pf07262.yaml" } ], "pfam_ids": [ "PF07262" ], "protein_name": "Immunity protein CdiI-o11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFNKDQDYWANIFVTPDFLSVETYSGLGMTGRDPLFSPRLLQPDVDDKSLGEEILQALSDSRTLDVLEERVAFFDLEKSKEQYAAWIATLMEKYGYRTKRALFKNMKKVGIHLVNDVITIRPSFHEKLEAWSGNRINESDYVVLPADSSPTEIGSGLRLALSRCKG", "sequence_length": 167, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dffaee543fe41772c65a941b1e8dd447ad6d3908ca29297871ffe4a97ef541ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B3BM81.json", "taxon_id": "478008", "uniprot_accession": "B3BM81", "uniprot_release": "2026_03" } ], "pfam_id": "PF07262", "short_name": "CdiI", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07270", "short_name": "DUF1438", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALPVFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGSQGEAMAKKLAKGIEVKPGEIVIPFTD", "sequence_length": 186, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f3f9c032fe387fed8bb14c32e5a177434b4f1ec67e924c2868b3dc7ee91601dc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AB26.json", "taxon_id": "83333", "uniprot_accession": "P0AB26", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1439-pf07273.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07273", "section": "canonical_examples", 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"sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P40822.json", "taxon_id": "99287", "uniprot_accession": "P40822", "uniprot_release": "2026_03" } ], "pfam_id": "PF07273", "short_name": "DUF1439", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1440-pf07274.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07274", "section": "canonical_examples", "url": 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"HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1450-pf07293.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07293", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1450-pf07293.yaml" } ], "pfam_ids": [ "PF07293" ], "protein_name": "UPF0349 protein RBAM_029300", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010190.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1450-pf07293.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07293", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1450-pf07293.yaml" } ], "pfam_ids": [ "PF07293" ], "protein_name": "UPF0349 protein YuzB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNPMIEFCVSNLAHGSQEARAILEKDPNLDVLEYGCLSYCGTCMESLFALVNGEVVMGETPAELVENIYTFIEENPMF", "sequence_length": 78, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6b13f04372a84473f17450c1527a4dd33ad74d18c091fe191c7c55782a97573b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32116.json", "taxon_id": "224308", "uniprot_accession": "O32116", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1450-pf07293.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07293", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1450-pf07293.yaml" } ], "pfam_ids": [ "PF07293" ], "protein_name": "UPF0741 protein YwzC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANEFRVCDDCQATNIKTLLPRLKEVDPDAKVEVGCQSYCGPGRKKSFAFVNNRPLSAPTEDELIDKVKKKIKK", "sequence_length": 74, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6d5b84ec4b18566fa61417b1c0b04db9b635a3674f9f8b1e82f0a787b1e08248", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32280.json", "taxon_id": "224308", "uniprot_accession": "O32280", "uniprot_release": "2026_03" } ], "pfam_id": "PF07293", "short_name": "DUF1450", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/zinc-ribbon-containing-protein-nf008261.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008261", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/zinc-ribbon-containing-protein-nf008261.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1451-pf07295.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07295", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1451-pf07295.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AAT9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07295" ], "protein_name": "Uncharacterized protein YbeL", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b36874e01e320a4f9adb986046205576e4f9c2599d6331864a14d90e060ea0be", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNKVAQYYRELVASLSERLRNGERDIDALVEQARERVIKTGELTRTEVDELTRAVRRDLEEFAMSYEESLKEESDSVFMRVIKESLWQELADITDKTQLEWREVFQDLNHHGVYHSGEVVGLGNLVCEKCHFHLPIYTPEVLTLCPKCGHDQFQRRPFEP", "sequence_length": 160, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b36874e01e320a4f9adb986046205576e4f9c2599d6331864a14d90e060ea0be", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAT9.json", "taxon_id": "83333", "uniprot_accession": "P0AAT9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1451-pf07295.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07295", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1451-pf07295.yaml" } ], "pfam_ids": [ "PF07295" ], "protein_name": "Uncharacterized protein YbeL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKVAQYYRELVASLSERLRNGERDIDALVEQARERVIKTGELTRTEVDELTRAVRRDLEEFAMSYEESLKEESDSVFMRVIKESLWQELADITDKTQLEWREVFQDLNHHGVYHSGEVVGLGNLVCEKCHFHLPIYTPEVLTLCPKCGHDQFQRRPFEP", "sequence_length": 160, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b36874e01e320a4f9adb986046205576e4f9c2599d6331864a14d90e060ea0be", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAU0.json", "taxon_id": "199310", "uniprot_accession": "P0AAU0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1451-pf07295.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07295", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1451-pf07295.yaml" } ], "pfam_ids": [ "PF07295" ], "protein_name": "Uncharacterized protein YbeL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKVAQYYRELVASLSERLRNGERDIDALVEQARERVIKTGELTRTEVDELTRAVRRDLEEFAMSYEESLKEESDSVFMRVIKESLWQELADITDKTQLEWREVFQDLNHHGVYHSGEVVGLGNLVCEKCHFHLPIYTPEVLTLCPKCGHDQFQRRPFEP", "sequence_length": 160, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b36874e01e320a4f9adb986046205576e4f9c2599d6331864a14d90e060ea0be", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAU1.json", "taxon_id": "83334", "uniprot_accession": "P0AAU1", "uniprot_release": "2026_03" } ], "pfam_id": "PF07295", "short_name": "DUF1451", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1453-pf07301.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07301", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1453-pf07301.yaml" } ], "pfam_ids": [ "PF07301" ], "protein_name": "Protein CcdC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMIIVSSIIAVLMAVAVMVVRIKSSDKPVSPKKIILPPIFMSTGALMFLFPVFWVTGAEFLEAFTLGVIFSIFLIKTSKFEIKNNEIYMKRSKAFVFILVGLLVIRIVMKSILSTSIDYGALSGMFWILAFGMIVPWRIAMYLSYRKLHNELQSSNIQMN", "sequence_length": 160, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e7173badf098b2a09bf069f490a6305488e9b142d7310ee0aa24bf2ebf398eb7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P45710.json", "taxon_id": "224308", "uniprot_accession": "P45710", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1453-pf07301.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07301", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1453-pf07301.yaml" } ], "pfam_ids": [ "PF07301" ], "protein_name": "Uncharacterized protein YxjN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAMSPYIFIVLILIILSMYRERTVKPGKLLIIPLLLLWGVSASFQPAYFHSVLHVAISGILLLIGLACGFGIGKMVNVRIHPETGKVTSRGSLGSVILILVILSLRMAARTWLPESNEMFIAIIHSMFFVPLGTITARNIMLYKAYRRLTAGKVSIQ", "sequence_length": 157, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7334a3f747d3221437ae7861a57d3ba28320635592bdec7e95a7127138061a7b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P55182.json", "taxon_id": "224308", "uniprot_accession": "P55182", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1453-pf07301.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07301", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1453-pf07301.yaml" } ], "pfam_ids": [ "PF07301" ], "protein_name": "Protein csk22", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHLTLQSVYPAIIIIFFLYKKIKRSIGYQPLKPRWLFTRIILFSLFAFGLSIFSAIHPFLYGYLILGILGGWLLVFFAKKNISFEKRRGKIYFRTHIWVEVILLTLFLSRFLYRVTELYLTSPDLNRLGSYSQSIGTDPLTIGVCFLIAVYYIGFSSFIIKLSRNELEQHEYNKEKDILAR", "sequence_length": 181, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c2e36dce60dd76da4427414b8cc7573632381dbc296fff3a0c7d6a7d447f5e28", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P94497.json", "taxon_id": "224308", "uniprot_accession": "P94497", "uniprot_release": "2026_03" } ], "pfam_id": "PF07301", "short_name": "DUF1453", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1454-pf07305.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07305", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1454-pf07305.yaml" } ], "pfam_ids": [ "PF07305" ], "protein_name": "Uncharacterized protein YiiQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKPGCTLFFLLCSALTVTTEAHAQTPDTATTAPYLLAGAPTFDLSISQFREDFNSQNPSLPLNEFRAIDSSPDKANLTRAASKINENLYASTALERGTLKIKSIQMTWLPIQGPEQKAAKAKAQEYMAAVIRTLTPLMTKTQSQKKLQSLLTAGKNKRYYTETEGALRYVVADNGEKGLTFAVEPIKLALSESLEGLNK", "sequence_length": 199, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5c72d358dbc05b352529249544b590c40de971f5989b3a06d8feadfbaa518c0c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32160.json", "taxon_id": "83333", "uniprot_accession": "P32160", "uniprot_release": "2026_03" } ], "pfam_id": "PF07305", "short_name": "DUF1454", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07306", "short_name": "DUF1455", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1456-pf07308.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07308", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1456-pf07308.yaml" } ], "pfam_ids": [ "PF07308" ], "protein_name": "Uncharacterized protein YehS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSNDILRSVRYILKANNNDLVRILALGNVEATAEQIAVWLRKEDEEGFQRCPDIVLSSFLNGLIYEKRGKDESAPALEPERRINNNIVLKKLRIAFSLKTDDILAILTEQQFRVSMPEITAMMRAPDHKNFRECGDQFLRYFLRGLAARQHVKKG", "sequence_length": 156, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e6e888e9878c2cfc3514793e79fc3cd5a97568386bba1fef0ef84041012dc43b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P33355.json", "taxon_id": "83333", "uniprot_accession": "P33355", "uniprot_release": "2026_03" } ], "pfam_id": "PF07308", "short_name": "DUF1456", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07310", 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"section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1477-pf07346.yaml" } ], "pfam_ids": [ "PF07346" ], "protein_name": "Uncharacterized 12.2 kDa protein in EGT-IAP1 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSGDATRLHCSNAHAKQTLATLFANRNHSSFYEYAIAFVSTLLFKNNLNLMTACNLINSLINFELNMFGKSLLLNGFVNFCIANSDGVTIQHKMLTNVLSFLLEKYY", "sequence_length": 108, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a65ddc650ad901be039682f328742fc6f7a984d39e8070cfaa8dbbaa8b8ddd59", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41424.json", "taxon_id": "46015", "uniprot_accession": "P41424", "uniprot_release": "2026_03" } ], "pfam_id": "PF07346", "short_name": "DUF1477", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sapporo virus (isolate GI/Human/Germany/pJG-Sap01)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1478-pf07349.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07349", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1478-pf07349.yaml" } ], "pfam_ids": [ "PF07349" ], "protein_name": "Uncharacterized protein VP3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPTQSQSRATTRWSLTRLAQQVRPHPTLLLLIRSNPMGPHSAWSWLLPLVQSNPMSLRQYATALQSFVLLLGTTGCPRELFLDLYRFIPTLTRTLLTSLGCGPGGAVVLRSGYRSLVLACSLGVSLLLSYHQGLIPRPSGTQACCLTLSLMLASLSQFLS", "sequence_length": 161, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "edc3418d9a9f91798a37741d891e5cee70f09cc19e3f75acc527208fd48759ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q672I0.json", "taxon_id": "291175", "uniprot_accession": "Q672I0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sapporo virus (strain Human/United Kingdom/Manchester/1993)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1478-pf07349.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07349", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1478-pf07349.yaml" } ], "pfam_ids": [ "PF07349" ], "protein_name": "Uncharacterized protein VP3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPTQSQSKATTQWSLTRLAQQVRPHPTLLLLIRSNPMGPHSAWSWLLPLVQSNPMSLRQYATALQSFVLLLGTTGCPRELFLDLYRFIPTLTRTLLTSLGCGPGGAVVLRSGYRSLVLACSLGASLLLSYHQGLIPRPSGTQACCLTLSLMLASLSQFLS", "sequence_length": 161, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5b139b2eff4bc40322bba7d7dc344f4d0b022edb0ca7c9151b0d21e0eed1d891", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q69015.json", "taxon_id": "82659", "uniprot_accession": "Q69015", "uniprot_release": "2026_03" } ], "pfam_id": "PF07349", "short_name": "DUF1478", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gig2-like-pf07350.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07350", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gig2-like-pf07350.yaml" } ], "pfam_ids": [ "PF07350" ], "protein_name": "Uncharacterized protein YbiU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIATRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGWDQSMLDYLDRNRFDEVYKGPGDNFFGTLSASRPEIYPIYWSQAQMQARQSEEMANAQSFLNRLWTFESDGKQWFNPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQRVFANVFNGNLAQYDPWHAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAMAYVLLRPLLDDVPEDELCGVAPGRVLPVSEQWHPLLIEALTSIPKLEAGDSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAHKVKAALEKGASPGDFPREDYETNWEGRFTLADLNIHGKRALGMDV", "sequence_length": 421, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fc3521973a67f486ad4a5a238228a4876c2d45df1d7b64116aa3a68c53ed99e4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75791.json", "taxon_id": "83333", "uniprot_accession": "P75791", "uniprot_release": "2026_03" } ], "pfam_id": "PF07350", "short_name": "Gig2-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1480-pf07351.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07351", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1480-pf07351.yaml" } ], "pfam_ids": [ "PF07351" ], "protein_name": "Uncharacterized protein YebV", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTSVRIGAFEIDDGELHGESPGDRTLTIPCKSDPDLCMQLDAWDAETSIPALLNGEHSVLYRTRYDQQSDAWIMRLA", "sequence_length": 78, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0511d8d932acd80704c276214599e7f8c826f2c5247091e7b3e35ac6581fcfc8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64503.json", "taxon_id": "83333", "uniprot_accession": "P64503", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1480-pf07351.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07351", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1480-pf07351.yaml" } ], "pfam_ids": [ "PF07351" ], "protein_name": "Uncharacterized protein YebV", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTSVRIGAFEIDDGELHGESPGDRTLTIPCKSDPDLCMQLDAWDAETSIPALLNGEHSVLYRTRYDQQSDAWIMRLA", "sequence_length": 78, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0511d8d932acd80704c276214599e7f8c826f2c5247091e7b3e35ac6581fcfc8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64504.json", "taxon_id": "199310", "uniprot_accession": "P64504", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1480-pf07351.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07351", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1480-pf07351.yaml" } ], "pfam_ids": [ "PF07351" ], "protein_name": "Uncharacterized protein YebV", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTSVRIGAFEIDDGELHGESPGDRTLTIPCKSDPDLCMQLDAWDAETSIPALLNGEHSVLYRTRYDQQSDAWIMRLA", "sequence_length": 78, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0511d8d932acd80704c276214599e7f8c826f2c5247091e7b3e35ac6581fcfc8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64505.json", "taxon_id": "623", "uniprot_accession": "P64505", "uniprot_release": "2026_03" } ], "pfam_id": "PF07351", "short_name": "DUF1480", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1481-pf07356.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1481-pf07356.yaml" } ], "pfam_ids": [ "PF07356" ], "protein_name": "Uncharacterized protein YjaH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSFNEGVVSPLLSFWRRSLMLAGALLLTACSHNSSLPPFTASGFAEDQGAVRIWRKDSGDNVHLLAVFSPWRSGDTTTREYRWQGDNLTLININVYSKPPVNIRARFDDRGDLSFMQRESDGEKQQLSNDQIDLYRYRADQIRQISDALRQGRVVLRQGRWHAMEQTVTTCEGQTIKPDLDSQAIAHIERRQSRSSVDVSVAWLEAPEGSQLLLVANSDFCRWQPNEKTF", "sequence_length": 231, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4e0ea0108637e7dffe4a65b1227d5a9c8d672a5deca8389a1ae1f3671af88ef1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32681.json", "taxon_id": "83333", "uniprot_accession": "P32681", "uniprot_release": "2026_03" } ], "pfam_id": "PF07356", "short_name": "DUF1481", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/viral-release-from-host-cell-by-cytolysis-go0044659.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044659", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/viral-release-from-host-cell-by-cytolysis-go0044659.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1482-pf07358.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07358", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1482-pf07358.yaml" } ], "pfam_ids": [ "PF07358" ], "protein_name": "Uncharacterized protein YdfD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSAFVLVLTVFLVSGEPVDIAVSVHRTMQECMTAATEQKIPGNCYPVDKVIHQDNIEIPAGL", "sequence_length": 63, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "52355472061a41eef5d483e4f954856089071be19e59197ea8a8a5fd30079652", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P29010.json", "taxon_id": "83333", "uniprot_accession": "P29010", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1482-pf07358.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07358", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1482-pf07358.yaml" } ], "pfam_ids": [ "PF07358" ], "protein_name": "Uncharacterized protein YebW", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFALVLFVCYLDGGCEDIVVDVYNTEQQCLYSMSDQRIRQGGCFPIEDFIDGFWRPAQEYGDF", "sequence_length": 63, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2bdf438316712df2e50c8272ed42e69cd739c98bf495013860e47cfd2137c4cc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76275.json", "taxon_id": "83333", "uniprot_accession": "P76275", "uniprot_release": "2026_03" } ], "pfam_id": "PF07358", "short_name": "DUF1482", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07363", "short_name": "DUF1484", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sphingomonas sp", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1485-pf07364.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07364", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1485-pf07364.yaml" } ], "pfam_ids": [ "PF07171", "PF07364" ], "protein_name": "Microcystinase C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDRRTLMGGILSMAGSKATGAALPGRRLRVFVATLGTETNSFSPLPTGLDAFRATMLWRPGEHPDFATEATGPLWAARERAREGRYEVIEGTCAFAMPGGPVSAQAYQLLRDEILDQLRRAMPVDIVAFGLHGAMLAFGEDECEADLLERARAIVGPDVALGAELDLHAHLSQRLVRAADVLVAFKYYPHIDYVERARDLLDLLERIRAGEIMPTSSLFNCQMVAGLATQSSPMKELVADLFEFERRGEVLSGSLIQGFRAGDVARMGSKVLIYTNNDQPAAASIAQDFGRRYQAMASIMKGNGPERSFAADIELAKAATAYPVILVDSSDNPGGGASGDNMALARAMLDNDLVPSCIGPIWDPLAVQLGFEAGLGADFSLRVGGKVGEASGLPLDVRGKITGLAENVTQNLQGSRPPLGRVVCISTAGLDIIVSEIRDQCYGPDMFRALGVEPANKRYVAVKSSEQWRIGFGDMGRSVIYVASSQQSSIRHYHKRSRPMWPFEPV", "sequence_length": 507, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "31932a64464b632b95eaeefd6fec9bbae9d185afed344f68374a5662e19120e0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q93CA6.json", "taxon_id": "28214", "uniprot_accession": "Q93CA6", "uniprot_release": "2026_03" } ], "pfam_id": "PF07364", "short_name": "DUF1485", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07366", "short_name": "SnoaL", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07368", "short_name": "DUF1487", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1488-pf07369.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07369", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1488-pf07369.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/shew3726-like-superfamily-ipr036692.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036692", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/shew3726-like-superfamily-ipr036692.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/shew3726-like-3-30-160-140.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.160.140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/shew3726-like-3-30-160-140.yaml" } ], "pfam_ids": [ "PF07369" ], "protein_name": "Uncharacterized protein YrdB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRFTGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQGWVWLP", "sequence_length": 85, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d4494995681139d23f80e30d125fe39af65427eaf5573486cb584aa5d28a5f69", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P45795.json", "taxon_id": "83333", "uniprot_accession": "P45795", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1488-pf07369.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07369", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1488-pf07369.yaml" } ], "pfam_ids": [ "PF07369" ], "protein_name": "Uncharacterized protein YrdB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRFTGDTPEQWLASFRQHRWDLEEEADNLIQEQSEDDQGWVWLP", "sequence_length": 85, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb74c23e55e9b2a3e155bc8ad7c85ec4f52ad38ac8c8c9f7346b2fa9b10ec7cf", "sequence_version": 1, "source_url": 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"section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1490-pf07371.yaml" } ], "pfam_ids": [ "PF07371" ], "protein_name": "Uncharacterized protein MT0996", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVWHGFLAKAVPTVVTGAVGVAAYEALRKMVVKAPLRAATVSVAAWGIRLAREAERKAGESAEQARLMFADVLAEASERAGEEVPPLAVAGSDDGHDH", "sequence_length": 98, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5afe12ea821005bc388a064cd00d6d6de66356abbd83294aa254c9ee4b88e04e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKL8.json", "taxon_id": "83331", "uniprot_accession": "P9WKL8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"examples": [], "pfam_id": "PF07379", "short_name": "DUF1494", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/eara-pf07381.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07381", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/eara-pf07381.yaml" } ], "pfam_ids": [ "PF07381" ], "protein_name": "Uncharacterized protein MJ0905", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLAFIDPMIIRSLNKSKLRKKILYLLYKMYPHGIYLSEISRRVRSDPSNVLGCLKGMNGRYNGHFSLIELGLVECVERGGVKIYKLTDYGKKIVEVLKDQDSDFIESLRW", "sequence_length": 111, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c55c9d5f482b8e9de95ba274853370627eae744f88c5b599af8e16588ec366df", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58315.json", "taxon_id": "243232", "uniprot_accession": "Q58315", "uniprot_release": "2026_03" } ], "pfam_id": "PF07381", "short_name": "EarA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1496-pf07383.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07383", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1496-pf07383.yaml" } ], "pfam_ids": [ "PF07383" ], "protein_name": "Uncharacterized protein YnjH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRALFAVVLAFPLIALANPHYRPDVEVNVPPEVFSSGGQSAQPCTQCCVYQDQNYSEGAVIKAEGILLQCQRDDKTLSTNPLVWRRVKP", "sequence_length": 90, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "63c05265cc1f7d6200ad55879154ba0cfa39e82a9cdb0e96bfe401f609caa28f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76227.json", "taxon_id": "83333", "uniprot_accession": "P76227", "uniprot_release": "2026_03" } ], "pfam_id": "PF07383", "short_name": "DUF1496", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07384", "short_name": "DUF1497", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/d-lyxose-ketol-isomerase-activity-go0047828.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0047828", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/d-lyxose-ketol-isomerase-activity-go0047828.yaml" }, { 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0, "examples": [], "pfam_id": "PF07386", "short_name": "DUF1499", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07389", "short_name": "Pox_B6", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07394", "short_name": "DUF1501", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07397", "short_name": "DUF1502", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07399", "short_name": "Na_H_antiport_3", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1505-pf07403.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07403", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1505-pf07403.yaml" } ], "pfam_ids": [ "PF07403" ], "protein_name": "UPF0375 protein R05A10.4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLSIFSAIIFSITIASSAIPISENYVSWSSDSNCLDFDDSRDPNAVCEATTTWKRSENSSCIVSVYYVKKEKSSGTSNGIPQCSKTPCDATEKIVVDCETAFREKLANINH", "sequence_length": 112, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": 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"evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/regulatory-protein-ragb-c-terminal-ipr009988.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009988", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/regulatory-protein-ragb-c-terminal-ipr009988.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1510-pf07423.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07423", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1510-pf07423.yaml" } ], "pfam_ids": [ "PF07423" ], "protein_name": "Regulatory protein RagB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNNQSRYENRDKRRKANLVLNILIAIVSILIVVVAANLFINSPSSKDVSKDSETAQKQESPASGKTEKKSDEDIKDSKKDTSDSEKDSEKSSDSDSKKDDSSSKKDDSDSDSSSDSAGDGLKDAKVTEGGSSSDVEKTYENPDWKAVGTEQTGEHAATYDSSSQDWAEMLKAISYATGVSTDNMTVLWLGNNGSPQDAKGKILDKATGNKYQVTITWVDEKGWKPTKVEKLK", "sequence_length": 233, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "98daedfad55a10cc5754929d2c6002df1f2d64638e30a22743918ffb2cc46755", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32031.json", "taxon_id": "224308", "uniprot_accession": "O32031", "uniprot_release": "2026_03" } ], "pfam_id": "PF07423", "short_name": "DUF1510", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07431", "short_name": "DUF1512", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07433", "short_name": "DUF1513", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07438", "short_name": "DUF1514", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07439", "short_name": "DUF1515", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Geobacillus thermodenitrificans (strain NG80-2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1516-pf07457.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07457", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1516-pf07457.yaml" } ], "pfam_ids": [ "PF07457" ], "protein_name": "UPF0344 protein GTNG_0604", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTHAHITSWFIMIILFLIAVSMQRSGAAKANIIKMVLRLFYIITIITGLLLLHSIASISGLYWLKALAGLWVIGAMEMVLVAGKKGKSMAAGWTQWVIALVVTLFLGLLLPLGFDLF", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a863acff8f7ded134d1e8bd6c4b7475f277bb27190dd8eebc8943cbe0bc5a05e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4IKY2.json", "taxon_id": "420246", "uniprot_accession": "A4IKY2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain USA300 / TCH1516)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1516-pf07457.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07457", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1516-pf07457.yaml" } ], "pfam_ids": [ "PF07457" ], "protein_name": "UPF0344 protein USA300HOU_0928", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLHLHILSWVLAIILFIATYLNISKNQGRSPFFKPLHMILRLFMLLTLISGFWILIQSFMNGGANHMLLTLKMLCGVAVVGLMEVSIAKRKRHEQSHTMFWITIALIIITMVLGVILPLGPISKLFGIG", "sequence_length": 129, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "00d446b36a08573cf62e780b9e19cf50687c17896d18ad3c33de0d668314cbff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8Z075.json", "taxon_id": "451516", "uniprot_accession": "A8Z075", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010198.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF010198", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010198.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1516-pf07457.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07457", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1516-pf07457.yaml" } ], "pfam_ids": [ "PF07457" ], "protein_name": "UPF0344 protein YisL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTHLHITTWVVALILLFVSYSLYSSGSAKGAKITHMILRLFYILIILTGAELFVRFANWNGEYAGKMILGIITIGLMEMLLIRKKKEKSTGGLWVGFVIVLLLTVLLGLHLPIGFQLF", "sequence_length": 118, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d5b2a3349526f1f1c27c550d691ca73c5f1e6282fa9c3c9a5fc53cec61f456ca", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O06725.json", "taxon_id": "224308", "uniprot_accession": "O06725", "uniprot_release": "2026_03" } ], "pfam_id": "PF07457", "short_name": "DUF1516", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1517-pf07466.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07466", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1517-pf07466.yaml" } ], "pfam_ids": [ "PF07466" ], "protein_name": "Protein FLAP1 homolog A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKMLKNLPLPKNITWRSVWMRGTSVVIIFVLAFTLVFTPTFEAEARRSGGRIGGGSFRAPSAPSRSYSGPSGGSYRSGGTYGGGGFGFPFIIPFFGFGGGFGGIFGILVMIAIANVVINAIRNGGGSSGEGGGGLAASSDPQVGIAQIQVGLLASAKELKKELDELALSADTGTANGRSLVLQEATLALLRHPEYWVYGSSQSDKVRLSAAEAAFNQLALTERSKFTDETLSNFNNQLRQGGRATAIGGDSPDAVPDGAGEYILVTIIAAALGNLNLPAVNDSSQLKQSLQTLGGISSDRLLAIEVLWTPQEEGDTLTSNDIISEYPELRLV", "sequence_length": 333, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "94683088a4baa9edcb0677cb2c5f832986520a21bc2f104c1d3e52c589caaab5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P74433.json", "taxon_id": "1111708", "uniprot_accession": "P74433", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/photosynthetic-acclimation-go0009643.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009643", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/photosynthetic-acclimation-go0009643.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1517-pf07466.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07466", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1517-pf07466.yaml" } ], "pfam_ids": [ "PF07466" ], "protein_name": "FLUCTUATING-LIGHT-ACCLIMATION protein 1, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASSSTFLELTPFQWNQPLPYTQRPHHRTVLLYSKPQRRSNSIRLQISVKYKQSTSSSDPDLRSNFNPFEQIAIQVKKALDSLKKPAIAAVLLGLLLFYDPNSALAASGGRIGGNSFSSRSRSSSSSSSQSYSVPRTSNPSFSYSARTAPYYGPSPFGGGFVGPAVGFGFGGFSSFSLILVGFAAFVLVSGFLSDRSQDDSILTDTQKTSVIKLQVGLLGLGRTLQQDFNRLAESSDTSTPEGLSYVLTEATLALLRHPDYCISCYSSVDVKPSIEKGEKRFNQLSIEERGKFDEETLVNVNSIKRQSSKIRKASGFSNEYIVVTILMAAEGIHKLPPINGTTDLKEALLKLGSIPRNKIMAVEVLWTPQNEADALSERELLEDYPLLRPL", "sequence_length": 391, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8377be0aa6c401ee66dd0f35e5df9889a5147eada1d181eb0850d981afec98ff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8RWI0.json", "taxon_id": "3702", "uniprot_accession": "Q8RWI0", "uniprot_release": "2026_03" } ], "pfam_id": "PF07466", "short_name": "DUF1517", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4927-pf16279.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16279", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4927-pf16279.yaml" } ], "pfam_ids": [ "PF00989", "PF07469", "PF08815", "PF08832", "PF14598", "PF16279", "PF16665", "PF23172" ], "protein_name": "Nuclear receptor coactivator 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGLGESSLDPLAAESRKRKLPCDAPGQGLVYSGEKWRREQESKYIEELAELISANLSDIDNFNVKPDKCAILKETVRQIRQIKEQGKTISSDDDVQKADVSSTGQGVIDKDSLGPLLLQALDGFLFVVNRDGNIVFVSENVTQYLQYKQEDLVNTSVYSILHEPRRKDFLNTYQNPQLMEFLGLMRTRDKKAPYILIVRMLMKTHDILEDVNASPETRQRYETMQCFALSQPRAMLEEGEDLQCCMICVARRVTAPFPSSPESFITRHDLSGKVVNIDTNSLRSSMRPGFEDIIRRCIQRFFSLNDGQSWSQKRHYQEAYVHGHAETPVYRFSLADGTIVSAQTKSKLFRNPVTNDRHGFISTHFLQREQNGYRPNPIPQDKGIRPPAAGCGVSMSPNQNVQMMGSRTYGVPDPSNTGQMGGARYGASSSVASLTPGQSLQSPSSYQNSSYGLSMSSPPHGSPGLGPNQQNIMISPRNRGSPKMASHQFSPAAGAHSPMGPSGNTGSHSFSSSSLSALQAISEGVGTSLLSTLSSPGPKLDNSPNMNISQPSKVSGQDSKSPLGLYCEQNPVESSVCQSNSRDPQVKKESKESSGEVSETPRGPLESKGHKKLLQLLTCSSDDRGHSSLTNSPLDPNCKDSSVSVTSPSGVSSSTSGTVSSTSNVHGSLLQEKHRILHKLLQNGNSPAEVAKITAEATGKDTSSTASCGEGTTRQEQLSPKKKENNALLRYLLDRDDPSDVLAKELQPQADSGDSKLSQCSCSTNPSSGQEKDPKIKTETNDEVSGDLDNLDAILGDLTSSDFYNNPTNGGHPGAKQQMFAGPSSLGLRSPQPVQSVRPPYNRAVSLDSPVSVGSGPPVKNVSAFPGLPKQPILAGNPRMMDSQENYGANMGPNRNVPVNPTSSPGDWGLANSRASRMEPLASSPLGRTGADYSATLPRPAMGGSVPTLPLRSNRLPGARPSLQQQQQQQQQQQQQQQQQQQQQQQMLQMRTGEIPMGMGVNPYSPAVQSNQPGSWPEGMLSMEQGPHGSQNRPLLRNSLDDLLGPPSNAEGQSDERALLDQLHTFLSNTDATGLEEIDRALGIPELVNQGQALESKQDVFQGQEAAVMMDQKAALYGQTYPAQGPPLQGGFNLQGQSPSFNSMMGQISQQGSFPLQGMHPRAGLVRPRTNTPKQLRMQLQQRLQGQQFLNQSRQALEMKMENPAGTAVMRPMMPQAFFNAQMAAQQKRELMSHHLQQQRMAMMMSQPQPQAFSPPPNVTASPSMDGVLAGSAMPQAPPQQFPYPANYGMGQPPEPAFGRGSSPPSAMMSSRMGPSQNAMVQHPQPTPMYQPSDMKGWPSGNLARNGSFPQQQFAPQGNPAAYNMVHMNSSGGHLGQMAMTPMPMSGMPMGPDQKYC", "sequence_length": 1398, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6abc80564d67aeb6edcdf3f6bed6ff2875ee0998db488e82eb2a3f7d0b09617d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O09000.json", "taxon_id": "10090", "uniprot_accession": "O09000", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/ncoa-u2-pf16665.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16665", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/ncoa-u2-pf16665.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bhlh-ncoa-pf23172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bhlh-ncoa-pf23172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1518-pf07469.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1518-pf07469.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4927-pf16279.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16279", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4927-pf16279.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q15596", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00989", "PF07469", "PF08815", "PF08832", "PF14598", "PF16279", "PF16665", "PF23172" ], "protein_name": "Nuclear receptor coactivator 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "873e4d8992906f338e9327452047a9bcc1098d2abd79347002ead3dd34e2fabd", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSGMGENTSDPSRAETRKRKECPDQLGPSPKRNTEKRNREQENKYIEELAELIFANFNDIDNFNFKPDKCAILKETVKQIRQIKEQEKAAAANIDEVQKSDVSSTGQGVIDKDALGPMMLEALDGFFFVVNLEGNVVFVSENVTQYLRYNQEELMNKSVYSILHVGDHTEFVKNLLPKSIVNGGSWSGEPPRRNSHTFNCRMLVKPLPDSEEEGHDNQEAHQKYETMQCFAVSQPKSIKEEGEDLQSCLICVARRVPMKERPVLPSSESFTTRQDLQGKITSLDTSTMRAAMKPGWEDLVRRCIQKFHAQHEGESVSYAKRHHHEVLRQGLAFSQIYRFSLSDGTLVAAQTKSKLIRSQTTNEPQLVISLHMLHREQNVCVMNPDLTGQTMGKPLNPISSNSPAHQALCSGNPGQDMTLSSNINFPINGPKEQMGMPMGRFGGSGGMNHVSGMQATTPQGSNYALKMNSPSQSSPGMNPGQPTSMLSPRHRMSPGVAGSPRIPPSQFSPAGSLHSPVGVCSSTGNSHSYTNSSLNALQALSEGHGVSLGSSLASPDLKMGNLQNSPVNMNPPPLSKMGSLDSKDCFGLYGEPSEGTTGQAESSCHPGEQKETNDPNLPPAVSSERADGQSRLHDSKGQTKLLQLLTTKSDQMEPSPLASSLSDTNKDSTGSLPGSGSTHGTSLKEKHKILHRLLQDSSSPVDLAKLTAEATGKDLSQESSSTAPGSEVTIKQEPVSPKKKENALLRYLLDKDDTKDIGLPEITPKLERLDSKTDPASNTKLIAMKTEKEEMSFEPGDQPGSELDNLEEILDDLQNSQLPQLFPDTRPGAPAGSVDKQAIINDLMQLTAENSPVTPVGAQKTALRISQSTFNNPRPGQLGRLLPNQNLPLDITLQSPTGAGPFPPIRNSSPYSVIPQPGMMGNQGMIGNQGNLGNSSTGMIGNSASRPTMPSGEWAPQSSAVRVTCAATTSAMNRPVQGGMIRNPAASIPMRPSSQPGQRQTLQSQVMNIGPSELEMNMGGPQYSQQQAPPNQTAPWPESILPIDQASFASQNRQPFGSSPDDLLCPHPAAESPSDEGALLDQLYLALRNFDGLEEIDRALGIPELVSQSQAVDPEQFSSQDSNIMLEQKAPVFPQQYASQAQMAQGSYSPMQDPNFHTMGQRPSYATLRMQPRPGLRPTGLVQNQPNQLRLQLQHRLQAQQNRQPLMNQISNVSNVNLTLRPGVPTQAPINAQMLAQRQREILNQHLRQRQMHQQQQVQQRTLMMRGQGLNMTPSMVAPSGMPATMSNPRIPQANAQQFPFPPNYGISQQPDPGFTGATTPQSPLMSPRMAHTQSPMMQQSQANPAYQAPSDINGWAQGNMGGNSMFSQQSPPHFGQQANTSMYSNNMNINVSMATNTGGMSSMNQMTGQISMTSVTSVPTSGLSSMGPEQVNDPALRGGNLFPNQLPGMDMIKQEGDTTRKYC", "sequence_length": 1464, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "873e4d8992906f338e9327452047a9bcc1098d2abd79347002ead3dd34e2fabd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q15596.json", "taxon_id": "9606", "uniprot_accession": "Q15596", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/ncoa-u2-pf16665.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16665", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/ncoa-u2-pf16665.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bhlh-ncoa-pf23172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bhlh-ncoa-pf23172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1518-pf07469.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1518-pf07469.yaml" } ], "pfam_ids": [ "PF00989", "PF07469", "PF08815", "PF08832", "PF14598", "PF16665", "PF23172" ], "protein_name": "Nuclear receptor coactivator 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGLGDSSSDPANPDSHKRKGSPCDTLASSTEKRRREQENKYLEELAELLSANISDIDSLSVKPDKCKILKKTVDQIQLMKRMEQEKSTTDDDVQKSDISSSSQGVIEKESLGPLLLEALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMNTSVYSILHVGDHAEFVKNLLPKSLVNGVPWPQEATRRNSHTFNCRMLIHPPDEPGTENQEACQRYEVMQCFTVSQPKSIQEDGEDFQSCLICIARRLPRPPAITGVESFMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSAHTKCKLCYPQSPDMQPFIMGIHIIDREHSGLSPQDDTNSGMSIPRVNPSVNPSISPAHGVARSSTLPPSNSNMVSTRINRQQSSDLHSSSHSNSSNSQGSFGCSPGSQIVANVALNQGQASSQSSNPSLNLNNSPMEGTGISLAQFMSPRRQVTSGLATRPRMPNNSFPPNISTLSSPVGMTSSACNNNNRSYSNIPVTSLQGMNEGPNNSVGFSASSPVLRQMSSQNSPSRLNIQPAKAESKDNKEIASILNEMIQSDNSSSDGKPLDSGLLHNNDRLSDGDSKYSQTSHKLVQLLTTTAEQQLRHADIDTSCKDVLSCTGTSNSASANSSGGSCPSSHSSLTERHKILHRLLQEGSPSDITTLSVEPDKKDSASTSVSVTGQVQGNSSIKLELDASKKKESKDHQLLRYLLDKDEKDLRSTPNLSLDDVKVKVEKKEQMDPCNTNPTPMTKPTPEEIKLEAQSQFTADLDQFDQLLPTLEKAAQLPGLCETDRMDGAVTSVTIKSEILPASLQSATARPTSRLNRLPELELEAIDNQFGQPGTGDQIPWTNNTVTAINQSKSEDQCISSQLDELLCPPTTVEGRNDEKALLEQLVSFLSGKDETELAELDRALGIDKLVQGGGLDVLSERFPPQQATPPLIMEERPNLYSQPYSSPSPTANLPSPFQGMVRQKPSLGTMPVQVTPPRGAFSPGMGMQPRQTLNRPPAAPNQLRLQLQQRLQGQQQLIHQNRQAILNQFAATAPVGINMRSGMQQQITPQPPLNAQMLAQRQRELYSQQHRQRQLIQQQRAMLMRQQSFGNNLPPSSGLPVQMGNPRLPQGAPQQFPYPPNYGTNPGTPPASTSPFSQLAANPEASLANRNSMVSRGMTGNIGGQFGTGINPQMQQNVFQYPGAGMVPQGEANFAPSLSPGSSMVPMPIPPPQSSLLQQTPPASGYQSPDMKAWQQGAIGNNNVFSQAVQNQPTPAQPGVYNNMSITVSMAGGNTNVQNMNPMMAQMQMSSLQMPGMNTVCPEQINDPALRHTGLYCNQLSSTDLLKTEADGTQQVQQVQVFADVQCTVNLVGGDPYLNQPGPLGTQKPTSGPQTPQAQQKSLLQQLLTE", "sequence_length": 1441, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dddb51b76c8ca8110d129423330bb7be9ee9a239d49aff0b808b1755e7831ac7", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q15788.json", "taxon_id": "9606", "uniprot_accession": "Q15788", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/ncoa-u2-pf16665.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16665", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/ncoa-u2-pf16665.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bhlh-ncoa-pf23172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bhlh-ncoa-pf23172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1518-pf07469.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1518-pf07469.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4927-pf16279.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16279", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4927-pf16279.yaml" } ], "pfam_ids": [ "PF00989", "PF07469", "PF08815", "PF08832", "PF14598", "PF16279", "PF16665", "PF23172" ], "protein_name": "Nuclear receptor coactivator 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGLGENLDPLASDSRKRKLPCDTPGQGLTCSGEKRRREQESKYIEELAELISANLSDIDNFNVKPDKCAILKETVRQIRQIKEQGKTISNDDDVQKADVSSTGQGVIDKDSLGPLLLQALDGFLFVVNRDGNIVFVSENVTQYLQYKQEDLVNTSVYNILHEEDRKDFLKNLPKSTVNGVSWTNETQRQKSHTFNCRMLMKTPHDILEDINASPEMRQRYETMQCFALSQPRAMMEEGEDLQSCMICVARRITTGERTFPSNPESFITRHDLSGKVVNIDTNSLRSSMRPGFEDIIRRCIQRFFSLNDGQSWSQKRHYQEAYLNGHAETPVYRFSLADGTIVTAQTKSKLFRNPVTNDRHGFVSTHFLQREQNGYRPNPNPVGQGIRPPMAGCNSSVGGMSMSPNQGLQMPSSRAYGLADPSTTGQMSGARYGGSSNIASLTPGPGMQSPSSYQNNNYGLNMSSPPHGSPGLAPNQQNIMISPRNRGSPKIASHQFSPVAGVHSPMASSGNTGNHSFSSSSLSALQAISEGVGTSLLSTLSSPGPKLDNSPNMNITQPSKVSNQDSKSPLGFYCDQNPVESSMCQSNSRDHLSDKESKESSVEGAENQRGPLESKGHKKLLQLLTCSSDDRGHSSLTNSPLDSSCKESSVSVTSPSGVSSSTSGGVSSTSNMHGSLLQEKHRILHKLLQNGNSPAEVAKITAEATGKDTSSITSCGDGNVVKQEQLSPKKKENNALLRYLLDRDDPSDALSKELQPQVEGVDNKMSQCTSSTIPSSSQEKDPKIKTETSEEGSGDLDNLDAILGDLTSSDFYNNSISSNGSHLGTKQQVFQGTNSLGLKSSQSVQSIRPPYNRAVSLDSPVSVGSSPPVKNISAFPMLPKQPMLGGNPRMMDSQENYGSSMGGPNRNVTVTQTPSSGDWGLPNSKAGRMEPMNSNSMGRPGGDYNTSLPRPALGGSIPTLPLRSNSIPGARPVLQQQQQMLQMRPGEIPMGMGANPYGQAAASNQLGSWPDGMLSMEQVSHGTQNRPLLRNSLDDLVGPPSNLEGQSDERALLDQLHTLLSNTDATGLEEIDRALGIPELVNQGQALEPKQDAFQGQEAAVMMDQKAGLYGQTYPAQGPPMQGGFHLQGQSPSFNSMMNQMNQQGNFPLQGMHPRANIMRPRTNTPKQLRMQLQQRLQGQQFLNQSRQALELKMENPTAGGAAVMRPMMQPQVSSQQGFLNAQMVAQRSRELLSHHFRQQRVAMMMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTQAFSPPPNVTASPSMDGLLAGPTMPQAPPQQFPYQPNYGMGQQPDPAFGRVSSPPNAMMSSRMGPSQNPMMQHPQAASIYQSSEMKGWPSGNLARNSSFSQQQFAHQGNPAVYSMVHMNGSSGHMGQMNMNPMPMSGMPMGPDQKYC", "sequence_length": 1424, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6ffd495ceb38724e91c62cdb51078c556c645722c3e98093edd559d941882bd1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y6Q9.json", "taxon_id": "9606", "uniprot_accession": "Q9Y6Q9", "uniprot_release": "2026_03" } ], "pfam_id": "PF07469", "short_name": "DUF1518", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07481", "short_name": "DUF1521", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07482", "short_name": "DUF1522", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07485", "short_name": "DUF1529", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07505", "short_name": "DUF5131", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1523-pf07509.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07509", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1523-pf07509.yaml" } ], "pfam_ids": [ "PF07509" ], "protein_name": "Uncharacterized protein HI_0453", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKFFKYFLFIVVFLFHGFMFSVVNYVFPHYDVTRVTGVEVKRVDKDGPITKSNPADGPTRDVYYINTQNDDGKIMVYRNEDTRWGFPFYFKFGSANLQAEAQALGNDNKLVQIKYYGWRITMVDEYRNATSIKEITADDTPSNPIVSWILYVFLLATLFLSIQFIRGWFDSDK", "sequence_length": 174, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9db8ab7daacbe266d0592ae7a20a02d7b07f59c2b4b082b8039dc8888f91365b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P43999.json", "taxon_id": "71421", "uniprot_accession": "P43999", "uniprot_release": "2026_03" } ], "pfam_id": "PF07509", "short_name": "DUF1523", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gmrsd-c-pf07510.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07510", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gmrsd-c-pf07510.yaml" } ], "pfam_ids": [ "PF07510" ], "protein_name": "Uncharacterized secreted protein ARB_06907", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKYTFLAVLSAVTVLATPAPVPTPPNIPSASTAQSLLSGLTVRPQGPQDGYSRDKFPHWITISGTCNTRETVLRRDGTNVQVDGSCAATSGSWFSPYDGATWTAASDVDIDHVVPLSNAWKSGAASWTTSQRQSFANDLSNPQLIAVTDNVNQAKGDQGPESWKPPLQSYWCTYSRMWIKVKSVYDLSVTSAEKSALTSMLNTC", "sequence_length": 204, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "780fd63b4626db59de2696b9cb646c9aa2b90c573796c3a19ed7b9afa6521517", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/D4AK18.json", "taxon_id": "663331", "uniprot_accession": "D4AK18", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gmrsd-restriction-endonucleases-c-terminal-domain-ipr011089.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011089", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gmrsd-restriction-endonucleases-c-terminal-domain-ipr011089.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gmrsd-c-pf07510.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07510", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gmrsd-c-pf07510.yaml" } ], "pfam_ids": [ "PF07510" ], "protein_name": "Uncharacterized protein YfjM", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDDVHRFGNLFLISPSSNSILSNYSPADKKKFYVETERAESPKQAIMMSYKEWGPDGQGINNIESHEHAMLTLLKEHRDMTLPTRK", "sequence_length": 87, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bab841956cf5410a75386435383643f1f18f6d7a79a31365c946f79ee9a21032", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P52128.json", "taxon_id": "83333", "uniprot_accession": "P52128", "uniprot_release": "2026_03" } ], "pfam_id": "PF07510", "short_name": "GmrSD_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07511", "short_name": "DUF1525", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07515", "short_name": "TraI_2_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pga2-pf07543.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07543", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pga2-pf07543.yaml" } ], "pfam_ids": [ "PF07543" ], "protein_name": "Processing of GAS1 and ALP protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEVAETWVDTWMAKLVNYDYKHFIRLVIIVGGYLLLRNIASRELAKKQLAAQVEKDKRDKEEKRSKDLIDKPDDAATAETTSFGWGKKTRRRVKRQQELFENALEEAKRRNQGLDPDSDADIEELLEE", "sequence_length": 129, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d29595e455201aa84341845e8ec77276e62496f91a050b0bf019d4ea2e0c29e5", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P53903.json", "taxon_id": "559292", "uniprot_accession": "P53903", "uniprot_release": "2026_03" } ], "pfam_id": "PF07543", "short_name": "PGA2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07550", "short_name": "Shr-like_HID", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07553", "short_name": "Lipoprotein_Ltp", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vreelandella zhaodongensis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1538-pf07556.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07556", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1538-pf07556.yaml" } ], "pfam_ids": [ "PF07556" ], "protein_name": "Na(+), Li(+), K(+)/H(+) antiporter subunit A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIVYSLANQLKDSLRDLLPVVLVMGFFQLVVIRQPLPDSLALLDLVLGLVFVVVGLTLFIKGLELGLFPLGENLARAFVKKGSVAWLLIFAFALGFGSTVAEPALIAVAARAGEVVSESGLIADTSAAQASFAFTLRMVVALSVGTAVVVGVLRIFKGWPLHLMIIAGYIIVLLLTLFAPNELIGIAYDSGGVTTSTITVPLVTALGVGLASTIKGRNPMLDGFGLIAFASVMPIIFVLLFGIFGLSLVTGST", "sequence_length": 254, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "df8d98a91f2e41e33dd8df22c40669e91cf4a55f5edee87564c82332a6d6f305", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A1X9QDU4.json", "taxon_id": "1176240", "uniprot_accession": "A0A1X9QDU4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vreelandella zhaodongensis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1538-pf07556.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07556", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1538-pf07556.yaml" } ], "pfam_ids": [ "PF07556" ], "protein_name": "Na(+), Li(+), K(+)/H(+) antiporter subunit B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MILLTIFWDTLLDILPIAAIIFGFQYIVIRKRIQRLPQVLAGFFMVWVGLSLFLVGLEQALFPMGELMASQLTNTDFLPAVEQGVQRHWADYYWVYLFAFAIGASTTIAEPSLIAVSIKAGEISGGTINPFMLRIAVALGMAFGITLGTWRIVMGWPLQWFVFAAYCLVIIQTLRSPKSIIPLAFDSGGVTTSTITVPIIAALGLGLAASIPGRSALMDGFGMIALACLFPIITVMGYAQIAQWKDKRKQTTPHLSYSKAPPPSKGDNNAL", "sequence_length": 271, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "28b67931fb1add6a9eedc4773c4ecccf32c63812bd715b4dfbc998d708a24122", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A1X9QDU5.json", "taxon_id": "1176240", "uniprot_accession": "A0A1X9QDU5", "uniprot_release": "2026_03" } ], "pfam_id": "PF07556", "short_name": "DUF1538", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07560", "short_name": "DUF1539", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1540-ipr011437.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011437", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1540-ipr011437.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1540-pf07561.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07561", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1540-pf07561.yaml" } ], "pfam_ids": [ "PF07561" ], "protein_name": "Uncharacterized protein YtzL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEQKILCEVNNCSYWGKGNKCTADAIYVVSHTGETAENSRETDCKTFKPHDL", "sequence_length": 52, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e663c346a670eec5f877cd738905ab98dae4c138b9c945d3131ff2d5384c324", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0H3Q2.json", "taxon_id": "224308", "uniprot_accession": "C0H3Q2", "uniprot_release": "2026_03" } ], "pfam_id": "PF07561", "short_name": "DUF1540", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1541-ipr011438.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011438", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1541-ipr011438.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1541-pf07563.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07563", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1541-pf07563.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/domain-of-unknown-function-duf1541-2-30-30-1210.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.30.30.1210", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/domain-of-unknown-function-duf1541-2-30-30-1210.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O05503", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07563" ], "protein_name": "Uncharacterized protein YdhK", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "05cb600d5dbd7764c6fd349c06b881d60403ed45e8ddb9429d6699794e71793a", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSAGKSYRKKMKQRRMNMKISKYALGILMLSLVFVLSACGNNNSTKESTHDNHSDSSTHEEMDHSGSADVPEGLQESKNPKYKVGSQVIINTSHMKGMKGAEATVTGAYDTTAYVVSYTPTNGGQRVDHHKWVIQEEIKDAGDKTLQPGDQVILEASHMKGMKGATAEIDSAEKTTVYMVDYTSTTSGEKVKNHKWVTEDELSAK", "sequence_length": 205, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "05cb600d5dbd7764c6fd349c06b881d60403ed45e8ddb9429d6699794e71793a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O05503.json", "taxon_id": "224308", "uniprot_accession": "O05503", "uniprot_release": "2026_03" } ], "pfam_id": "PF07563", "short_name": "DUF1541", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain Mu3 / ATCC 700698)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1542-pf07564.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07564", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1542-pf07564.yaml" } ], "pfam_ids": [ "PF01468", "PF07554", "PF07564" ], "protein_name": "Extracellular matrix-binding protein EbhA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGNLQTAINDKSGTLASQNFLDADEQKRNAYNQAISAAETILNKQTGPNTAKTAVEQALNNVNSAKHALNGTQNLNNAKQAAITAINGASDLNQKQKDALKAQANGAQRVSNANDVQRNATELNTAMGQLQHAIADKTNTLASSKYVNADSTKQNAYTTKVTNAEHIISGTPTVVTTPSEVTAAANQVNSAKQELNGDERLRVAKQNANTAIDALTQLNTPQKAKLKEQVGQANRLEDVQSVQTNGQSLNNAMKGLRDSIANETTVKASQNYTDASPNNQSTYNSAVSNAKGIINQTNNPTMDTSAITQATTQVNNAKNGLNGAENLRNAQNTAKQNLNTLSHLTNNQKSAISSQIDRAGHVSEVTAAKNAATELNAQMGNLEQAIHDQNTVKQGVNFTDADKAKRDAYTNAVSRAETILNKTQGANTSKQDVEAAIQNVTSAKNALNGDQNVTNAKNAAKNALNNLTSINNAQKRDLTTKIDQATTVAGVEAVSNTGTQLNTAMANLQNGINDKANTLASENYHDADSDKKTAYTQAVTNAENILNKNSGSNLDKAAVENALSQVTNAKGALNGNHNLEQAKSNANTTINGLQHLTTAQKDKLKQQVQQAQNVAGVDTVKSSANTLNGAMGTLRNSIQDNTATKNGQNYLDATERNKTNYNNAVDSANGVINATSNPNMDANAINQIATQVTSTKNALDGTHNLTQAKQTATNAIDGATNLNKAQKDALKAQVTSAQRVANVTSIQQTANELNTAMGQLQHGIDDENATKQTQKYRDAEQSKKTAYDQAVAAAKAILNKQTGSNSDKAAVDRALQQVTSTKDALNGDAKLAEAKAAARQNLGTLNHITNAQRTALEGQINQATTVDGVNTVKTNANTLDGAMNSLQGAINDKDATLRNQNYLDADESKRNAYTQAVTAAEGILNKQTGGNTSKADVDNALNAVTRAKAALNGAENLRNAKTSATNTINGLPNLTQLQKDNLKHQVEQAQNVVGVNGVKDKGNTLNTAMGALRTSIQNDNTTKTSQNYLDASDSNKNNYNTAVNNANGVINATNNPNMDANAINDMANQVNTTKAALNGAQNLAQAKTNATNTINNAQDLNQKQKDALKTQVNNAQRVSDANNVQHTATELNGAMTALKAAIADKERTKASGNYVNADQEKRQAYDSKVTNAENIINGTPNATLTVNDVNSAASQVNAAKTALNGDNNLRVAKEHANNTIDGLAQLNNVQKAKLKEQVQSATTLDGVQTVKNSSQTLNTAMKGLRDSIANEATIKAGQNYTDASPNNRNEYDSAVTAAKAIINQTSNPTMEPNTITQATSQVTTKEHALNGAQNLAQAKTTAKNNLNNLTSINNAQKDALTRNIDGATTVAGVNQETAKATELNNAMHSLQNGINDETQTKQTQKYLDAEPSKKSAYDQAVNAAKAILTKASGQNVDKAAVEQALQNVNSTKTALNGDAKLNEAKAAAKQTLGTLTHINNAQRNALDNEITQATNVEGVNTVKAKAQQLDGAMGQLETSIRDKDTTLQSQNYQDADDAKRTAYSQAVNAAATILNKTAGGNTPKADVERAMQAVTQANTALNGIQNLERAKQAANTAITNASDLNTKQKEALKAQVTSAGRVSAANGVEHTATELNTAMTALKRAIADKADTKASGNYVNADANKRQAYDEKVTAAEHIVSGTPTPTLTPSDVTNAATQVTNAKTQLNGNHNLEVAKQNANTAIDGLTSLNGPQKAKLKEQVGQATTLPNVQTVRDNAQTLNTAMKGLRDSIANEATIKAGQNYTDASQNKQNDYNNAVTAAKAIIGQTTSPSMIAQEINQAKDQVTAKQQALNGQENLRTAQTNAKQHLNGLSDLTNAQKDAAKRQIEGATHVNEVTQAQNNADALNTAMTNLKNGIQDQNTIKQGVNFTDADEAKRNAYTNAVTQAEQILNKAQGPNTAKDGVETALQNVQRAKNELNGNQNVANAKTTAKNALNNLTSINNAQKAALKSQIEGATTVAGVNQVSTMASELNTAMSNLQRGINDEAATKAAQKYTEADRDKQTAYNDAVTAAKTLLDKTAGSNDNKVAVEQALQRVNTAKTALNGDARLNEAKNTAKQQLATMSHLTNAQKANLTEQIERGTTVAGVQGIQANAGTLNQAMNQLRQSIASKDATKSSEDYQDANADLQNAYNDAVTNAEGIISATNNPEMNPDTINQKASQVNSAKSALNGDEKLAAVKQTAKSDIGRLTDLNNAQRTAANAEVDQAPNLAAVTAAKNKATSLNTAMGNLKHALAEKDNTKRSVNYTDADQPKQQAYDTAVTQAEAITNANGSNANETQVQAALNQLNQAKNDLNGDNKVAQAKETAKRALASYSNLNNAQSTAATSQIDNATTVADVTAAQNTANELNTAMGQLQNGINDQNTVKQQVNFTDADQGKKDAYTNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTHLNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADPTKKTAFDNAITQAESYLNKDHGTNKDKQAVEQAIQSVTSTENALNGDANLQCAKTEATQAIDNLTQLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQLKQAIGDHDTIVAGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNGDTNLATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSIANKDEVKASQPYVDADTDKQNAYNTAVTSAENIINATSQPTLDPSAVTQAANQVNTNKTALNGAQNLANKKQETTANINRLSHLNNAQKQDLNTQVTNAPNISTVNQVKTKAEQLDQAMERLINGIQDKDQVKQSVNFTDADPEKQTAYNNAVTAAENIINQANGTNANQSQVEAALSTVTTTKQALNGDRKVTDAKNNANQTLSTLDNLNNAQKGAVTGNINQAHTVAEVTQAIQTAQELNTAMGNLKNSLNDKDTTLGSQNFADADPEKKNAYNEAVRNAENILNKSTGTNVPKDQVEAAMNQVNTTKAALNGTQNLEKAKQHANTAIDGLSHLTNAQKEALKQLVQQSTTVAEAQGNEQKANNVDAAMDKLRQSIADNATTKQNQNYTDASPNKKDAYNNAVTTAQGIIDQTTNPSLDPTVINQAAGQVSTSKNALNGNENLEAAKQQATQSLGSLDNLNNAQKQAVTNQINGAHTVDEANQIKQNAQNLNTAMGNLKQAIADKDATKATVNFTDADQAKQQAYNTAVTNAENIISKANGGNATQTEVEQAIQQVNAAKQALNGNANVQHAKDEATALINNSNDLNQAQKDALKQQVQNATTVAGVNNVKQTAQELNNAMTQLKQGIADKEQTKADGNFVNADSDKQNAYNQAVAKAEALISGTPDVVVTPSEITAALNKVTQAKNDLNGNTNLATAKQNVQHAIDQLPNLNQAQRDEYSKQITQATLVPNVNAIQQAATTLNDAMTQLKQGIANKAQIKGSENYHDADTDKQTAYDNAVTKAEELLKQTTNPTMDPNTIQQALTKVNDTNQALNGNQKLADAKQDAKTTLGTLDHLNDAQKQALTTQVEQAPDIATVNNVKQNAQNLNNAMTNLNNALQDKTETLNSINFTDADQAKKDDYTNAVSHAEGILSKANGSNASQTEVEQAMQRVNEAKQALNGNDNVQRAKDAAKQVITNANDLNQAQKDALKQQVDAAQTVANVNTIKQTAQDLNQAMTQLKQGIADKDQTKANGNFVNADTDKQNAYNNAVAHAEQIISGTPNANVDPQQVAQALQQVNQAKGDLNGNHNLQVAKDNANTAIDQLPNLNQPQKTALKDQVSHAELVTGVNAIKQNADALNNAMGTLKQQIQANSQVPQSVDFTQADQDKQQAYNNAANQAQQIANGTPTPVLAPDTVTKAVTTMNQAKDALNGDEKLAQAKQDALANLDTLRDLNQPQRDALRNQINQAQALATVEQTKQNAQNVNTAMGNLKQGIANKDTVKASENYHDADVDKQTAYTNAVSQAEGIINQTTNPTLNPDDITRALTQVTDAKNSLNGEAKLATEKQNAKDAVSGMTHLNDAQKQALKGQIDQSPEIATVNQVKQTATSLDQAMDQLSQAINDKDQILADGNYLNADPDKQNAYKQAVAKAEALLNKQSGTNEVQAQVESITNEVNAAKQALNGNDNLANAKQQAKQQLANLTHLNDAQKQSFESQITQAPLVTDVTTINQKAQTLDHAMELLRNSVADNQTTLASEDYHDATAQRQNDYNKAVTAANNIINQTTSPTMNPDDVNGATTQVNNTKVALDGDENLAAAKQQANNRLDQLDHLNNAQKQQLQSQITQSSDIAAVNGHKQTAESLNTAMGNLINAIADHQAVEQRGNFINADTDKQTAYNTAVNEAAAMINKQTGQNANQTEVEQAITKVQTTLQALNGDHNLQVAKTNATQAIDVLTSLNDPQKTALKDQVTAATLVTAVHQIEQNANTLNQAMHGLRQSIQDNAATKANSKYINEDQPEQQNYDQAVQAANNIINEQTATLDNNAINQVAATVNTTKAALHGDVKLQNDKDHAKQTVSQLAHLNNAQKHMEDTLIDSETTRTAVKQDLTEVQALDQLMDALQQSIADKDATRASSAYVNAEPNKKQAYDEAVQNAESIIAGLNNPTINKGNVSSATQAVISSKNALDGVERLAQDKQTAGNSLNHLDQLTPAQQQALENQINNATTCDKVAEIIAQAQALNEAMKALKESIKDQPQTEASSKFINEDQAQKDAYTQAVQHAKDLINKTTDPTLAKSIIDQATQAVTDAKNNLHGDQKLAQDKQRATETLNNLSNLNTPQRQALENQINNAATRGEVAQKLTEAQALNQAMEALRNSIQDQQQTESGSKFINEDKPQKDAYQAAVQNAKDLINQTGNPTLDKAQVEQLTHAFKQAKDNLHGDQKLADDKQHAVTDLNQLNGLNNPQRQALESQINNAATRGEVAQKLAEAKALDQAMQALRNSIQDQQQTEAGSKFINEDKPQKDAYQAAVQNAKDLINQTGNPTLDKSQVEQLTQAVTTAKDNLHGDQKLARDQQQAVTTVNALPNLNHAQQQTLTDAINAAPTRTEVAQHVQTATELDHAMETLKNKVDQVNTDKAQPNYTEASTDKKEAVDQALQAAQSITDPTNGSNANKDAVEQALTKLQEKVNELNGNERVAEAKTQAKQTIDQLTHLNADQIATAKQNIDQATKLQPIAELVDQATQLNQSMDQLQQAVNEHANVEQTIDYTQADSDKQKAYKQAIADAENVLKQNANKQQVDQALQNILNAKQALNGDERVALAKTNGKHDIDQLNALNNAQQDGFKGRIDQSNDLNQIQQIVDEAKALNRAMDQLSQEITGNEGRTKGSTNYVNADTQVKQVYDEAVDKAKQALDKSSGQNLTAEQVIKLNDAVTAAKKALNGEERLNNRKAEALQRLDQLTHLNNAQRQLAIQQINNAETLNKASRAINRATKLDNAMGAVQQYIDEQHLGVISSTNYINADDNLKANYDNAIANAAHELDKVQGNAIAKAEAEQLKQNIIDAQNALNGDQNLANAKDKANAFVNSLNGLNQQQQDLAHKAINNADTVSDVTDIVNNQIDLNDAMETLKHLVDNEIPNAEQTVNYQNADDNAKTNFDDAKRLANTLLNSDNTNVNDINGAIQAVNDAIHNLNGDQRLQDAKDKAIQSINQALANKLKEIEASNATDQDKLIAKNKAEELANSIINNINKATSNQAVSQVQTAGNHAIEQVHANEIPKAKIDANKDVDKQVQALIDEIDRNPNLTDKEKQALKDRINQILQQGHNDINNALTKEEIEQAKAQLAQALQDIKDLVKAKEDAKQDVDKQVQALIDEIDQNPNLTDKEKQALKDRINQILQQGHNGINNAMTKEEIEQAKAQLAQALKEIKDLVKAKENAKQDVDKQVQALIDEIDQNPNLTDKEKQALKDRINQILQQGHNDINNAMTKEEIEQAKAQLAQALQDIKDLVKAKEDAKNAIKALANAKRDQINSNPDLTPEQKAKALKEIDEAEKRALQNVENAQTIDQLNRGLNLGLDDIRNTHVWEVDEQPAVNEIFEATPEQILVNGELIVHRDDIITEQDILAHINLIDQLSAEVIDTPSTATISDSLTAKVEVTLLDGSKVIVNVPVKVVEKELSVVKQQAIESIENAAQQKIDEINNSVTLTLEQKEAAIAEVNKLKQQAIDHVNNAPDVHSVEEIQQQEQAYIEQFNPEQFTIEQAKSNAIKSIEDAIQHMIDEIKARTDLTDKEKQEAIAKLNQLKEQAIQAIQRAQSISEITEQLEQFKAQMKAANPTAKELAKRKQEAISRIKDFSNEKINSIRNSEIGTADEKQAAMNQINEIVLETIRDINNAHTLQQVEAALNNGIARISAVQIVISDRAKQSSSTGNESNSHLTIGYGTANHPFNSSTIGHKKKLDEDDDIDPLHMRHFSNNFGNVIKNAIGVVGISGLLASFWFFIAKRRRKEDEEEELEIRDNNKDSIKETLDDTKHLPLLFAKRRRKEDEEDVTVEEKDSLNNGESLDKVKHTPFFLPKRRRKEDEEDVEVTNENTDEKVLKDNEHSPLLFAKRRKDKEEDVETTTSIESKDEDVPLLLAKKKNQKDNQSKDKKSASKNTSKKVAAKKKKKKSKKNKK", "sequence_length": 6713, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cb58107b809cedcf5f4c88767cb4a9dcd97209e7ee18bff6ff9f1c59b3860792", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A7X2C3.json", "taxon_id": "418127", "uniprot_accession": "A7X2C3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain NCTC 8325 / PS 47)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1542-pf07564.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07564", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1542-pf07564.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ga-pf01468.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01468", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ga-pf01468.yaml" } ], "pfam_ids": [ "PF01468", "PF04650", "PF07554", "PF07564" ], "protein_name": "Extracellular matrix-binding protein ebh", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNYRDKIQKFSIRKYTVGTFSTVIATLVFLGFNTSQAHAAETNQPASVVKQKQQSNNEQTENRESQVQNSQNSQNGQSLSATHENEQPNISQANLVDQKVAQSSTTNDEQPASQNVNTKKDSATAATTQPDKEQSKHKQNESQSANKNGNDNRAAHVENHEANVVTASDSSDNGNVQHDRNELQAFFDANYHDYRFIDRENADSGTFNYVKGIFDKINTLLGSNDPINNKDLQLAYKELEQAVALIRTMPQRQQTSRRSNRIQTRSVESRAAEPRSVSDYQNANSSYYVENANDGSGYPVGTYINASSKGAPYNLPTTPWNTLKASDSKEIALMTAKQTGDGYQWVIKFNKGHAPHQNMIFWFALPADQVPVGRTDFVTVNSDGTNVQWSHGAGAGANKPLQQMWEYGVNDPHRSHDFKIRNRSGQVIYDWPTVHIYSLEDLSRASDYFSEAGATPATKAFGRQNFEYINGQKPAESPGVPKVYTFIGQGDASYTISFKTQGPTVNKLYYAAGGRALEYNQLFMYSQLYVESTQDHQQRLNGLRQVVNRTYRIGTTKRVEVSQGNVQTKKVLESTNLNIDDFVDDPLSYVKTPSNKVLGFYSNNANTNAFRPGGAQQLNEYQLSQLFTDQKLQEAARTRNPIRLMIGFDYPDAYGNSETLVPVNLTVLPEIQHNIKFFKNDDTQNIAEKPFSKQAGHPVFYVYAGNQGNASVNLGGSVTSIQPLRINLTSNENFTDKDWQITGIPRTLHIENSTNRPNNARERNIELVGNLLPGDYFGTIRFGRKEQLFEIRVKPHTPTITTTAEQLRGTALQKVPVNISGIPLDPSALVYLVAPTNQTTNGGSEADQIPSGYTILATGTPDGVHNTITIRPQDYVVFIPPVGKQIRAVVYYNKVVASNMSNAVTILPDDIPPTINNPVGINAKYYRGDEVNFTMGVSDRHSGIKNTTITTLPNGWTSNLTKADKNNGSLSITGRVSMNQAFNSDITFKVSATDNVNNTTNDSQSKHVSIHVGKISEDAHPIVLGNTEKVVVVNPTAVSNDEKQSIITAFMNKNQNIRGYLASTDPVTVDNNGNVTLHYRDGSSTTLDATNVMTYEPVVKPEYQTVNAAKTATVTIAKGQSFSIGDIKQYFTLSNGQPIPSGTFTNITSDRTIPTAQEVSQMNAGTQLYHITATNAYHKDSEDFYISLKIIDVKQPEGDQRVYRTSTYDLTTDEISKVKQAFINANRDVITLAEGDISVTNTPNGANVSTITVNINKGRLTKSFASNLANMNFLRWVNFPQDYTVTWTNAKIANRPTDGGLSWSDDHKSLIYRYDATLGTQITTNDILTMLKATTTVPGLRNNITGNEKSQAEAGGRPNFRTTGYSQSNATTDGQRQFTLNGQVIQVLDIINPSNGYGGQPVTNSNTRANHSNSTVVNVNEPAANGAGAFTIDHVVKSNSTHNASDAVYKAQLYLTPYGPKQYVEHLNQNTGNTTDAINIYFVPSDLVNPTISVGNYTNHQVFSGETFTNTITANDNFGVQSVTVPNTSQITGTVDNNHQHVSATAPNVTSATNKTINLLATDTSGNTATTSFNVTVKPLRDKYRVGTSSTAANPVRIANISNNATVSQADQTTIINSLTFTETVPNRSYARASANEITSKTVSNVSRTGNNANVTVTVTYQDGTTSTVTVPVKHVIPEIVAHSHYTVQGQDFPAGNGSSASDYFKLSNGSDIADATITWVSGQAPNKDNTRIGEDITVTAHILIDGETTPITKTATYKVVRTVPKHVFETARGVLYPGVSDMYDAKQYVKPVNNSWSTNAQHMNFQFVGTYGPNKDVVGISTRLIRVTYDNRQTEDLTILSKVKPDPPRIDANSVTYKAGLTNQEIKVNNVLNNSSVKLFKADNTPLNVTNITHGSGFSSVVTVSDALPNGGIKAKSSISMNNVTYTTQDEHGQVVTVTRNESVDSNDSATVTVTPQLQATTEGAVFIKGGDGFDFGHVERFIQNPPHGATVAWHDSPDTWKNTVGNTHKTAVVTLPNGQGTRNVEVPVKVYPVANAKAPSRDVKGQNLTNGTDAMNYITFDPNTNTNGITAAWANRQQPNNQQAGVQHLNVDVTYPGISAAKRVPVTVNVYQFEFPQTTYTTTVGGTLASGTQASGYAHMQNATGLPTDGFTYKWNRDTTGTNDANWSAMNKPNVAKVVNAKYDVIYNGHTFATSLPAKFVVKDVQPAKPTVTETAAGAITIAPGANQTVNTHAGNVTTYADKLVIKRNGNVVTTFTRRNNTSPWVKEASAATVAGIAGTNNGITVAAGTFNPADTIQVVATQGSGETVSDEQRSDDFTVVAPQPNQATTKIWQNGHIDITPNNPSGHLINPTQAMDIAYTEKVGNGAEHSKTINVVRGQNNQWTIANKPDYVTLDAQTGKVTFNANTIKPNSSITITPKAGTGHSVSSNPSTLTAPAAHTVNTTEIVKDYGSNVTAAEINNAVQVANKRTATIKNGTAMPTNLAGGSTTTIPVTVTYNDGSTEEVQESIFTKADKRELITAKNHLDDPVSTEGKKPGTITQYNNAMHNAQQQINTAKTEAQQVINNERATPQQVSDALTKVRAAQTKIDQAKALLQNKEDNSQLVTSKNNLQSSVNQVPSTAGMTQQSIDNYNAKKREAETEITAAQRVIDNGDATAQQISDEKHRVDNALTALNQAKHDLTADTHALEQAVQQLNRTGTTTGKKPASITAYNNSIRALQSDLTSAKNSANAIIQKPIRTVQEVQSALTNVNRVNERLTQAINQLVPLADNSALKTAKTKLDEEINKSVTTDGMTQSSIQAYENAKRAGQTESTNAQNVINNGDATDQQIAAEKTKVEEKYNSLKQAIAGLTPDLAPLQTAKTQLQNDIDQPTSTTGMTSASIAAFNEKLSAARTKIQEIDRVLASHPDVATIRQNVTAANAAKSALDQARNGLTVDKAPLENAKNQLQHSIDTQTSTTGMTQDSINAYNAKLTAARNKIQQINQVLAGSPTVEQINTNTSTANQAKSDLDHARQALTPDKAPLQTAKTQLEQSINQPTDTTGMTTASLNAYNQKLQAARQKLTEINQVLNGNPTVQNINDKVTEANQAKDQLNTARQGLTLDRQPALTTLHGASNLNQAQQNNFTQQINAAQNHAALETIKSNITALNTAMTKLKDSVADNNTIKSDQNYTDATPANKQAYDNAVNAAKGVIGETTNPTMDVNTVNQKAASVKSTKDALDGQQNLQRAKTEATNAITHASDLNQAQKNALTQQVNSAQNVQAVNDIKQTTQSLNTAMTGLKRGVANHNQVVQSDNYVNADTNKKNDYNNAYNHANDIINGNAQHPVITPSDVNNALSNVTSKEHALNGEAKLNAAKQEANTALGHLNNLNNAQRQNLQSQINGAHQIDAVNTIKQNATNLNSAMGNLRQAVADKDQVKRTEDYADADTAKQNAYNSAVSSAETIINQTTNPTMSVDDVNRATSAVTSNKNALNGYEKLAQSKTDAARAIDALPHLNNAQKADVKSKINAASNIAGVNTVKQQGTDLNTAMGNLQGAINDEQTTLNSQNYQDATPSKKTAYTNAVQAAKDILNKSNGQNKTKDQVTEAMNQVNSAKNNLDGTRLLDQAKQTAKQQLNNMTHLTTAQKTNLTNQINSGTTVAGVQTVQSNANTLDQAMNTLRQSIANKDATKASEDYVDANNDKQTAYNNAVAAAETIINANSNPEMNPSTITQKAEQVNSSKTALNGDENLAAAKQNAKTYLNTLTSITDAQKNNLISQITSATRVSGVDTVKQNAQHLDQAMASLQNGINNESQVKSSEKYRDADTNKQQEYDNAITAAKAILNKSTGPNTAQNAVEAALQRVNNAKDALNGDAKLIAAQNAAKQHLGTLTHITTAQRNDLTNQISQATNLAGVESVKQNANSLDGAMGNLQTAINDKSGTLASQNFLDADEQKRNAYNQAVSAAETILNKQTGPNTAKTAVEQALNNVNNAKHALNGTQNLNNAKQAAITAINGASDLNQKQKDALKAQANGAQRVSNAQDVQHNATELNTAMGTLKHAIADKTNTLASSKYVNADSTKQNAYTTKVTNAEHIISGTPTVVTTPSEVTAAANQVNSAKQELNGDERLREAKQNANTAIDALTQLNTPQKAKLKEQVGQANRLEDVQTVQTNGQALNNAMKGLRDSIANETTVKTSQNYTDASPNNQSTYNSAVSNAKGIINQTNNPTMDTSAITQATTQVNNAKNGLNGAENLRNAQNTAKQNLNTLSHLTNNQKSAISSQIDRAGHVSEVTATKNAATELNTQMGNLEQAIHDQNTVKQSVKFTDADKAKRDAYTNAVSRAEAILNKTQGANTSKQDVEAAIQNVSSAKNALNGDQNVTNAKNAAKNALNNLTSINNAQKRDLTTKIDQATTVAGVEAVSNTSTQLNTAMANLQNGINDKTNTLASENYHDADSDKKTAYTQAVTNAENILNKNSGSNLDKTAVENALSQVANAKGALNGNHNLEQAKSNANTTINGLQHLTTAQKDKLKQQVQQAQNVAGVDTVKSSANTLNGAMGTLRNSIQDNTATKNGQNYLDATERNKTNYNNAVDSANGVINATSNPNMDANAINQIATQVTSTKNALDGTHNLTQAKQTATNAIDGATNLNKAQKDALKAQVTSAQRVANVTSIQQTANELNTAMGQLQHGIDDENATKQTQKYRDAEQSKKTAYDQAVAAAKAILNKQTGSNSDKAAVDRALQQVTSTKDALNGDAKLAEAKAAAKQNLGTLNHITNAQRTDLEGQINQATTVDGVNTVKTNANTLDGAMNSLQGSINDKDATLRNQNYLDADESKRNAYTQAVTAAEGILNKQTGGNTSKADVDNALNAVTRAKAALNGADNLRNAKTSATNTIDGLPNLTQLQKDNLKHQVEQAQNVAGVNGVKDKGNTLNTAMGALRTSIQNDNTTKTSQNYLDASDSNKNNYNTAVNNANGVINATNNPNMDANAINGMANQVNTTKAALNGAQNLAQAKTNATNTINNAHDLNQKQKDALKTQVNNAQRVSDANNVQHTATELNSAMTALKAAIADKERTKASGNYVNADQEKRQAYDSKVTNAENIISGTPNATLTVNDVNSAASQVNAAKTALNGDNNLRVAKEHANNTIDGLAQLNNAQKAKLKEQVQSATTLDGVQTVKNSSQTLNTAMKGLRDSIANEATIKAGQNYTDASPNNRNEYDSAVTAAKAIINQTSNPTMEPNTITQVTSQVTTKEQALNGARNLAQAKTTAKNNLNNLTSINNAQKDALTRSIDGATTVAGVNQETAKATELNNAMHSLQNGINDETQTKQTQKYLDAEPSKKSAYDQAVNAAKAILTKASGQNVDKAAVEQALQNVNSTKTALNGDAKLNEAKAAAKQTLGTLTHINNAQRTALDNEITQATNVEGVNTVKAKAQQLDGAMGQLETSIRDKDTTLQSQNYQDADDAKRTAYSQAVNAAATILNKTAGGNTPKADVERAMQAVTQANTALNGIQNLDRAKQAANTAITNASDLNTKQKEALKAQVTSAGRVSAANGVEHTATELNTAMTALKRAIADKAETKASGNYVNADANKRQAYDEKVTAAENIVSGTPTPTLTPADVTNAATQVTNAKTQLNGNHNLEVAKQNANTAIDGLTSLNGPQKAKLKEQVGQATTLPNVQTVRDNAQTLNTAMKGLRDSIANEATIKAGQNYTDASQNKQTDYNSAVTAAKAIIGQTTSPSMNAQEINQAKDQVTAKQQALNGQENLRTAQTNAKQHLNGLSDLTDAQKDAVKRQIEGATHVNEVTQAQNNADALNTAMTNLKNGIQDQNTIKQGVNFTDADEAKRNAYTNAVTQAEQILNKAQGPNTSKDGVETALENVQRAKNELNGNQNVANAKTTAKNALNNLTSINNAQKEALKSQIEGATTVAGVNQVSTTASELNTAMSNLQNGINDEAATKAALNGTQNLEKAKQHANTAIDGLSHLTNAQKEALKQLVQQSTTVAEAQGNEQKANNVDAAMDKLRQSIADNATTKQNQNYTDASQNKKDAYNNAVTTAQGIIDQTTSPTLDPTVINQAAGQVSTTKNALNGNENLEAAKQQASQSLGSLDNLNNAQKQTVTDQINGAHTVDEANQIKQNAQNLNTAMGNLKQAIADKDATKATVNFTDADQAKQQAYNTAVTNAENIISKANGGNATQAEVEQAIKQVNAAKQALNGNANVQHAKDEATALINSSNDLNQAQKDALKQQVQNATTVAGVNNVKQTAQELNNAMTQLKQGIADKEQTKADGNFVNADPDKQNAYNQAVAKAEALISATPDVVVTPSEITAALNKVTQAKNDLNGNTNLATAKQNVQHAIDQLPNLNQAQRDEYSKQITQATLVPNVNAIQQAATTLNDAMTQLKQGIANKAQIKGSENYHDADTDKQTAYDNAVTKAEELLKQTTNPTMDPNTIQQALTKVNDTNQALNGNQKLADAKQDAKTTLGTLDHLNDAQKQALTTQVEQAPDIATVNNVKQNAQNLNNAMTNLNNALQDKTETLNSINFTDADQAKKDAYTNAVSHAEGILSKANGSNASQTEVEQAMQRVNEAKQALNGNDNVQRAKDAAKQVITNANDLNQAMTQLKQGIADKDQTKANGNFVNADTDKQNAYNNAVAHAEQIISGTPNANVDPQQVAQALQQVNQAKGDLNGNHNLQVAKDNANTAIDQLPNLNQPQKTALKDQVSHAELVTGVNAIKQNADALNNAMGTLKQQIQANSQVPQSVDFTQADQDKQQAYNNAANQAQQIANGIPTPVLTPDTVTQAVTTMNQAKDALNGDEKLAQAKQEALANLDTLRDLNQPQRDALRNQINQAQALATVEQTKQNAQNVNTAMSNLKQGIANKDTVKASENYHDADADKQTAYTNAVSQAEGIINQTTNPTLNPDEITRALTQVTDAKNGLNGEAKLATEKQNAKDAVSGMTHLNDAQKQALKGQIDQSPEIATVNQVKQTATSLDQAMDQLSQAINDKAQTLADGNYLNADPDKQNAYKQAVAKAEALLNKQSGTNEVQAQVESITNEVNAAKQALNGNDNLANAKQQAKQQLANLTHLNDAQKQSFESQITQAPLVTDVTTINQKAQTLDHAMELLRNSVADNQTTLASEDYHDATAQRQNDYNQAVTAANNIINQTTSPTMNPDDVNGATTQVNNTKVALDGDENLAAAKQQANNRLDQLDHLNNAQKQQLQSQITQSSDIAAVNGHKQTAESLNTAMGNLINAIADHQAVEQRGNFINADTDKQTAYNTAVNEAAAMINKQTGQNANQTEVEQAITKVQTTLQALNGDHNLQVAKTNATQAIDALTSLNDPQKTALKDQVTAATLVTAVHQIEQNANTLNQAMHGLRQSIQDNAATKANSKYINEDQPEQQNYDQAVQAANNIINEQTATLDNNAINQAATTVNTTKAALHGDVKLQNDKDHAKQTVSQLAHLNNAQKHMEDTLIDSETTRTAVKQDLTEAQALDQLMDALQQSIADKDATRASSAYVNAEPNKKQSYDEAVQNAESIIAGLNNPTINKGNVSSATQAVISSKNALDGVERLAQDKQTAGNSLNHLDQLTPAQQQALENQINNATTRDKVAEIIAQAQALNEAMKALKESIKDQPQTEASSKFINEDQAQKDAYTQAVQHAKDLINKTTDPTLAKSIIDQATQAVTDAKNNLHGDQKLAQDKQRATETLNNLSNLNTPQRQALENQINNAATRGEVAQKLTEAQALNQAMEALRNSIQDQQQTEAGSKFINEDKPQKDAYQAAVQNAKDLINQTNNPTLDKAQVEQLTQAVNQAKDNLHGDQKLADDKQHAVTDLNQLNGLNNPQRQALESQINNAATRGEVAQKLAEAKALDQAMQALRNSIQDQQQTESGSKFINEDKPQKDAYQAAVQNAKDLINQTGNPTLDKSQVEQLTQAVTTAKDNLHGDQKLARDQQQAVTTVNALPNLNHAQQQALTDAINAAPTRTEVAQHVQTATELDHAMETLKNKVDQVNTDKAQPNYTEASTDKKEAVDQALQAAESITDPTNGSNANKDAVDQVLTKLQEKENELNGNERVAEAKTQAKQTIDQLTHLNADQIATAKQNIDQATKLQPIAELVDQATQLNQSMDQLQQAVNEHANVEQTVDYTQADSDKQNAYKQAIADAENVLKQNANKQQVDQALQNILNAKQALNGDERVALAKTNGKHDIDQLNALNNAQQDGFKGRIDQSNDLNQIQQIVDEAKALNRAMDQLSQEITDNEGRTKGSTNYVNADTQVKQVYDETVDKAKQALDKSTGQNLTAKQVIKLNDAVTAAKKALNGEERLNNRKAEALQRLDQLTHLNNAQRQLAIQQINNAETLNKASRAINRATKLDNAMGSVQQYIDEQHLGVISSTNYINADDNLKANYDNAIANAAHELDKVQGNAIAKAEAEQLKQNIIDAQNALNGDQNLANAKDKANAFVNSLNGLNQQQQDLAHKAINNADTVSDVTDIVNNQIDLNDAMETLKHLVDNEIPNAEQTVNYQNADDNAKTNFDDAKRLANTLLNSDNTNVNDINGAIQAVNDAIHNLNGDQRLQDAKDKAIQSINQALANKLKEIEASNATDQDKLIAKNKAEELANSIINNINKATSNQAVSQVQTAGNHAIEQVHANEIPKAKIDANKDVDKQVQALIDEIDRNPNLTDKEKQALKDRINQILQQGHNGINNAMTKEEIEQAKAQLAQALQDIKDLVKAKEDAKQDVDKQVQALIDEIDQNPNLTDKEKQALKDRINQILQQGHNDINNAMTKEAIEQAKERLAQALQDIKDLVKAKEDAKNDIDKRVQALIDEIDQNPNLTDKEKQALKDRINQILQQGHNDINNALTKEEIEQAKAQLAQALQDIKDLVKAKEDAKNAIKALANAKRDQINSNPDLTPEQKAKALKEIDEAEKRALQNVENAQTIDQLNRGLNLGLDDIRNTHVWEVDEQPAVNEIFEATPEQILVNGELIVHRDDIITEQDILAHINLIDQLSAEVIDTPSTATISDSLTAKVEVTLLDGSKVIVNVPVKVVEKELSVVKQQAIESIENAAQQKINEINNSVTLTLEQKEAAIAEVNKLKQQAIDHVNNAPDVHSVEEIQQQEQAHIEQFNPEQFTIEQAKSNAIKSIEDAIQHMIDEIKARTDLTDKEKQEAIAKLNQLKEQAIQAIQRAQSIDEISEQLEQFKAQMKAANPTAKELAKRKQEAISRIKDFSNEKINSIRNSEIGTADEKQAAMNQINEIVLETIRDINNAHTLQQVEAALNNGIARISAVQIVTSDRAKQSSSTGNESNSHLTIGYGTANHPFNSSTIGHKKKLDEDDDIDPLHMRHFSNNFGNVIKNAIGVVGISGLLASFWFFIAKRRRKEDEEEELEIRDNNKDSIKETLDDTKHLPLLFAKRRRKEDEEDVTVEEKDSLNNGESLDKVKHTPFFLPKRRRKEDEEDVEVTNENTDEKVLKDNEHSPLLFAKRRKDKEEDVETTTSIESKDEDVPLLLAKKKNQKDNQSKDKKSASKNTSKKVAAKKKKKKAKKNKK", "sequence_length": 9535, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70c7509a6258558fac581748ddb35f49e461657060a546d33d09ce8b4a022fa7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2FYJ6.json", "taxon_id": "93061", "uniprot_accession": "Q2FYJ6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1542-pf07564.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07564", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1542-pf07564.yaml" } ], "pfam_ids": [ "PF01468", "PF07554", "PF07564" ], "protein_name": "Extracellular matrix-binding protein ebh", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGTLHNTVGSGILPYQQEIRIKLTSNEPIKDSEWSITGYPNTLTLQNAVGRTNNATEKNLALVGHIDPGNYFITVKFGDKVEQFEIRSKPTPPRIITTANELRGNSNHKPEIRVTDIPNDTTAKIKLVMGGTDGDHDPEINPYTVPENYTVVAEAYHDNDPSKNGVLTFRSSDYLKDLPLSGELKAIVYYNQYVQSNFSNSVPFSSDTTPPTINEPAGLVHKYYRGDHVEITLPVTDNTGGSGLRDVNVNLPQGWTKTFTINPNNNTEGTLKLIGNIPSNEAYNTTYHFNITATDNSGNTTNPAKTFILNVGKLADDLNPVGLSRDQLQLVTDPSSLSNSEREEVKRKISEANANIRSYLLQNNPILAGVNGDVTFYYRDGSVDVIDAENVITYEPERKSIFSENGNTNKKEAVITIARGQNYTIGPNLRKYFSLSNGSDLPNRDFTSISAIGSLPSSSEISRLNVGNYNYRVNAKNAYHKTQQELNLKLKIVEVNAPTGNNRVYRVSTYNLTNDEINKIKQAFKAANSGLNLNDNDITVSNNFDHRNVSSVTVTIRKGDLIKEFSSNLNNMNFLRWVNIRDDYTISWTSSKIQGRNTDGGLEWSPDHKSLIYKYDATLGRQINTNDVLTLLQATAKNSNLRSNINSNEKQLAERGSNGYSKSIIRDDGEKSYLLNSNPIQVLDLVEPDNGYGGRQVSHSNVIYNEKNSSIVNGQVPEANGASAFNIDKVVKANAANNGIMGVIYKAQLYLAPYSPKGYIEKLGQNLSNTNNVINVYFVPSDKVNPSITVGNYDHHTVYSGETFKNTINVNDNYGLNTVASTSDSAITMTRNNNELVGQAPNVTNSTNKIVKVKATDKSGNESIVSFTVNIKPLNEKYRITTSSSNQTPVRISNIQNNANLSIEDQNRVKSSLSMTKILGTRNYVNESNNDVRSQVVSKVNRSGNNATVNVTTTFSDGTTNTITVPVKHVLLEVVPTTRTTVRGQQFPTGKGTSPNDFFSLRTGGPVDARIVWVNNQGPDINSNQIGRDLTLHAEIFFDGETTPIRKDTTYKLSQSIPKQIYETTINGRFNSSGDAYPGNFVQAVNQYWPEHMDFRWAQGSGTPSSRNAGSFTKTVTVVYQNGQTENVNVLFKVKPNKPVIDSNSVISKGQLNGQQILVRNVPQNAQVTLYQSNGTVIPNTNTTIDSNGIATVTIQGTLPTGNITAKTSMTNNVTYTKQNSSGIASNTTEDISVFSENSDQVNVTAGMQAKNDGIKIIKGTNYNFNDFNSFISNIPAHSTLTWNEEPNSWKNNIGTTTKTVTVTLPNHQGTRTVDIPITIYPTVTAKNPVRDQKGRNLTNGTDVYNYIIFENNNRLGGTASWKDNRQPDKNIAGVQNLIALVNYPGISTPLEVPVKVWVYNFDFTQPIYKIQVGDTFPKGTWAGYYKHLENGEGLPIDGWKFYWNQQSTGTTSDQWQSLAYTRTPFVKTGTYDVVNPSNWGVWQTSQSAKFIVTNAKPNQPTITQSKTGDVTVTPGAVRNILISGTNDYIQASADKIVINKNGNKLTTFVKNNDGRWTVETGSPDINGIGPTNNGTAISLSRLAVRPGDSIEAIATEGSGETISTSATSEIYIVKAPQPEQVATHTYDNGTFDILPDNSRNSLNPTERVEINYTEKLNGNETQKSFTITKNNNGKWTINNKPNYVEFNQDNGKVVFSANTIKPNSQITITPKAGQGNTENTNPTVIQAPAQHTLTINEIVKEQGQNVTNDDINNAVQVPNKNRVAIKQGNALPTNLAGGSTSHIPVVIYYSDGSSEEATETVRTKVNKTELINARRRLDEEISKENKTPSSIRNFDQAMNRAQSQINTAKSDADQVIGTEFATPQQVNSALSKVQAAQNKINEAKALLQNKADNSQLVRAKEQLQQSIQPAASTDGMTQDSTRNYKNKRQAAEQAIQHANSVINNGDATSQQINDAKNTVEQAQRDYVEAKSNLRADKSQLQSAYDTLNRDVLTNDKKPASVRRYNEAISNIRKELDTAKADASSTLRNTNPSVEQVRDALNKINTVQPKVNQAIALLQPKENNSELVQAKKRLQDAVNDIPQTQGMTQQTINNYNDKQREAERALTSAQRVIDNGDATTQEITSEKSKVEQAMQALTNAKSNLRADKNELQTAYNKLIENVSTNGKKPASIRQYETAKARIQNQINDAKNEAERILGNDNPQVSQVTQALNKIKAIQPKLTEAINMLQNKENNTELVNAKNRLENAVNDTDPTHGMTQETINNYNAKKREAQNEIQKANMIINNGDATAQDISSEKSKVEQVLQALQNAKNDLRADKRELQTAYNKLIQNVNTNGKKPSSIQNYKSARRNIENQYNTAKNEAHNVLENTNPTVNAVEDALRKINAIQPEVTKAINILQDKEDNSELVRAKEKLDQAINSQPSLNGMTQESINNYTTKRREAQNIASSADTIINNGDASIEQITENKIRVEEATNALNEAKQHLTADTTSLKTEVRKLSRRGDTNNKKPSSVSAYNNTIHSLQSEITQTENRANTIINKPIRSVEEVNNALHEVNQLNQRLTDTINLLQPLANKESLKEARNRLESKINETVQTDGMTQQSVENYKQAKIKAQNESSIAQTLINNGDASDQEVSTEIEKLNQKLSELTNSINHLTVNKEPLETAKNQLQANIDQKPSTDGMTQQSVQSYERKLQEAKDKINSINNVLANNPDVNAIRTNKVETEQINNELTQAKQGLTVDKQPLINAKTALQQSLDNQPSTTGMTEATIQNYNAKRQKAEQVIQNANKIIENAQPSVQQVSDEKSKVEQALSELNNAKSALRADKQELQQAYNQLIQPTDLNNKKPASITAYNQRYQQFSNELNSTKTNTDRILKEQNPSVADVNNALNKVREVQQKLNEARALLQNKEDNSALVRAKEQLQQAVDQVPSTEGMTQQTKDDYNSKQQAAQQEISKAQQVIDNGDATTQQISNAKTNVERALEALNNAKTGLRADKEELQNAYNQLTQNIDTSGKTPASIRKYNEAKSRIQTQIDSAKNEANSILTNDNPQVSQVTAALNKIKAVQPELDKAIAMLKNKENNNALVQAKQQLQQIVNEVDPTQGMTTDTANNYKSKKREAEDEIQKAQQIINNGDATEQQITNETNRVNQAINAINKAKNDLRADKSQLENAYNQLIQNVDTNGKKPASIQQYQAARQAIETQYNNAKSEAHQILENSNPSVNEVAQALQKVEAVQLKVNDAIHILQNKENNSALVTAKNQLQQSVNDQPLTTGMTQDSINNYEAKRNEAQSAIRNAEAVINNGDATAKQISDEKSKVEQALAHLNDAKQQLTADTTELQTAVQQLNRRGDTNNKKPRSINAYNKAIQSLETQITSAKDNANAVIQKPIRTVQEVNNALQQVNQLNQQLTEAINQLQPLSNNDALKAARLNLENKINQTVQTDGMTQQSIEAYQNAKRVAQNESNTALALINNGDADEQQITTETDRVNQQTTNLTQAINGLTVNKEPLETAKTALQNNIDQVPSTDGMTQQSVANYNQKLQIAKNEINTINNVLANNPDVNAIKTNKAEAERISNDLTQAKNNLQVDTQPLEKIKRQLQDEIDQGTNTDGMTQDSVDNYNDSLSAAIIEKGKVNKLLKRNPTVEQVKESVANAQQVIQDLQNARTSLVPDKTQLQEAKNRLENSINQQTDTDGMTQDSLNNYNDKLAKARQNLEKISKVLGGQPTVAEIRQNTDEANAHKQALDTARSQLTLNREPYINHINNESHLNNAQKDNFKAQVNSAPNHNTLETIKNKADTLNQSMTALSESIADYENQKQQENYLDASNNKRQDYDNAVNAAKGILNQTQSPTMSADVIDQKAEDVKRTKTALDGNQRLEVAKQQALNHLNTLNDLNDAQRQTLTDTINHSPNINSVNQAKEKANTVNTAMTQLKQTIANYDDELHDGNYINADKDKKDAYNNAVNNAKQLINQSDANQAQLDPAEINKVTQRVNTTKNDLNGNDKLAEAKRDANTTIDGLTYLNEAQRNKAKENVGKASTKTNITSQLQDYNQLNIAMQALRNSVNDVNNVKANSNYINEDNGPKEAYNQAVTHAQTLINAQSNPEMSRDVVNQKTQAVNTAHQNLHGQQKLEQAQSSANTEIGNLPNLTNTQKAKEKELVNSKQTRTEVQEQLNQAKSLDSSMGTLKSLVAKQPTVQKTSVYINEDQPEQSAYNDSITMGQTIINKTADPVLDKTLVDNAISNISTKENALHGEQKLTTAKTEAINALNTLADLNTPQKEAIKTAINTAHTRTDVTAEQSKANQINSAMHTLRQNISDNESVTNESNYINAEPEKQHAFTEALNNAKEIVNEQQATLDANSINQKAQAILTTKNALDGEEQLRRAKENADQEINTLNQLTDAQRNSEKGLVNSSQTRTEVASQLAKAKELNKVMEQLNHLINGKNQMINSSKFINEDANQQQAYSNAIASAEALKNKSQNPELDKVTIEQAINNINSAINNLNGEAKLTKAKEDAVASINNLSGLTNEQKPKENQAVNGAQTRDQVANKLRDAEALDQSMQTLRDLVNNQNAIHSTSNYFNEDSTQKNTYDNAIDNGSTYITGQHNPELNKSTIDQTISRINTAKNDLHGVEKLQRDKGTANQEIGQLGYLNDPQKSGEESLVNGSNTRSEVEEHLNEAKSLNNAMKQLRDKVAEKTNVKQSSDYINDSTEHQRGYDQALQEAENIINEIGNPTLNKSEIEQKLQQLTDAQNALQGSHLLEEAKNNAITGINKLTALNDAQRQKAIENVQAQQTIPAVNQQLTLDREINTAMQALRDKVGQQNNVHQQSNYFNEDEQPKHNYDNSVQAGQTIIDKLQDPIMNKNEIEQAINQINTTQTALSGENKLHTDQESTNRQIEGLSSLNTAQINAEKDLVNQAKTRTDVAQKLAAAKEINSAMSNLRDGIQNKEDIKRSSAYINADPTKVTAYDQALQNAENIINATPNVELNKATIEQALSRVQQAQQDLDGVQQLANAKQQATQTVNGLNSLNDGQKRELNLLINSANTRTKVQEELNKATELNHAMEALRNSVQNVDQVKQSSNYVNEDQPEQHNYDNAVNEAQATINNNAQPVLDKLAIERLTQTVNTTKDALHGAQKLTQDQQAAETGIRGLTSLNEPQKNAEVAKVTAATTRDEVRNIRQEATTLDTAMLGLRKSIKDKNDTKNSSKYINEDHDQQQAYDNAVNNAQQVIDETQATLSSDTINQLANAVTQAKSNLHGDTKLQHDKDSAKQTIAQLQNLNSAQKHMEDSLIDNESTRTQVQHDLTEAQALDGLMGALKESIKDYTNIVSNGNYINAEPSKKQAYDAAVQNAQNIINGTNQPTINKGNVTTATQTVKNTKDALDGDHRLEEAKNNANQTIRNLSNLNNAQKDAEKNLVNSASTLEQVQQNLQTAQQLDNAMGELRQSIAKKDQVKADSKYLNEDPQIKQNYDDAVQRVETIINETQNPELLKANIDQATQSVQNAEQALHGAEKLNQDKQTSSTELDGLTDLTDAQREKLREQINTSNSRDDIKQKIEQAKALNDAMKKLKEQVAQKDGVHANSDYTNEDSAQKDAYNNALKQAEDIINNSSNPNLNAQDITNALNNIKQAQDNLHGAQKLQQDKNTTNQAIGNLNHLNQPQKDALIQAINGATSRDQVAEKLKEAEALDEAMKQLEDQVNQDDQISNSSPFINEDSDKQKTYNDKIQAAKEIINQTSNPTLDKQKIADTLQNIKDAVNNLHGDQKLAQSKQDANNQLNHLDDLTEEQKNHFKPLINNADTRDEVNKQLEIAKQLNGDMSTLHKVINDKDQIQHLSNYINADNDKKQNYDNAIKEAEDLIHNHPDTLDHKALQDLLNKIDQAHNELNGESRFKQALDNALNDIDSLNSLNVPQRQTVKDNINHVTTLESLAQELQKAKELNDAMKAMRDSIMNQEQIRKNSNYTNEDLAQQNAYNHAVDKINNIIGEDNATMDPQIIKQATQDINTAINGLNGDQKLQDAKTDAKQQITNFTGLTEPQKQALENIINQQTSRANVAKQLSHAKFLNGKMEELKVAVAKASLVRQNSNYINEDVSEKEAYEQAIAKGQEIINSENNPTISSTDINRTIQEINDAEQNLHGDNKLRQAQEIAKNEIQNLDGLNSAQITKLIQDIGRTTTKPAVTQKLEEAKAINQAMQQLKQSIADKDATLNSSNYLNEDSEKKLAYDNAVSQAEQLINQLNDPTMDISNIQAITQKVIQAKDSLHGANKLAQNQADSNLIINQSTNLNDKQKQALNDLINHAQTKQQVAEIIAQANKLNNEMGTLKTLVEEQSNVHQQSKYINEDPQVQNIYNDSIQKGREILNGTTDDVLNNNKIADAIQNIHLTKNDLHGDQKLQKAQQDATNELNYLTNLNNSQRQSEHDEINSAPSRTEVSNDLNHAKALNEAMRQLENEVALENSVKKLSDFINEDEAAQNEYSNALQKAKDIINGVPSSTLDKATIEDALLELQNARESLHGEQKLQEAKNQAVAEIDNLQALNPGQVLAEKTLVNQASTKPEVQEALQKAKELNEAMKALKTEINKKEQIKADSRYVNADSGLQANYNSALNYGSQIIATTQPPELNKDVINRATQTIKTAENNLNGQSKLAEAKSDGNQSIEHLQGLTQSQKDKQHDLINQAQTKQQVDDIVNNSKQLDNSMNQLQQIVNNDNTVKQNSDFINEDSSQQDAYNHAIQAAKDLITAHPTIMDKNQIDQAIENIKQALNDLHGSNKLSEDKKEASEQLQNLNSLTNGQKDTILNHIFSAPTRSQVGEKIASAKQLNNTMKALRDSIADNNEILQSSKYFNEDSEQQNAYNQAVNKAKNIINDQPTPVMANDEIQSVLNEVKQTKDNLHGDQKLANDKTDAQATLNALNYLNQAQRGNLETKVQNSNSRPEVQKVVQLANQLNDAMKKLDDALTGNDAIKQTSNYINEDTSQQVNFDEYTDRGKNIVAEQTNPNMSPTNINTIADKITEAKNDLHGVQKLKQAQQQSINTINQMTGLNQAQKEQLNQEIQQTQTRSEVHQVINKAQALNDSMNTLRQSITDEHEVKQTSNYINETVGNQTAYNNAVDRVKQIINQTSNPTMNPLEVERATSNVKISKDALHGERELNDNKNSKTFAVNHLDNLNQAQKEALTHEIEQATIVSQVNNIYNKAKALNNDMKKLKDIVAQQDNVRQSNNYINEDSTPQNMYNDTINHAQSIIDQVANPTMSHDEIENAINNIKHAINALDGEHKLQQAKENANLLINSLNDLNAPQRDAINRLVNEAQTREKVAEQLQSAQALNDAMKHLRNSIQNQSSVRQESKYINASDAKKEQYNHAVREVENIINEQHPTLDKEIIKQLTDGVNQANNDLNGVELLDADKQNAHQSIPTLMHLNQAQQNALNEKINNAVTRTEVAAIIGQAKLLDHAMENLEESIKDKEQVKQSSNYINEDSDVQETYDNAVDHVTEILNQTVNPTLSIEDIEHAINEVNQAKKQLRGKQKLYQTIDLADKELSKLDDLTSQQSSSISNQIYTAKTRTEVAQAIEKAKSLNHAMKALNKVYKNADKVLDSSRFINEDQPEKKAYQQAINHVDSIIHRQTNPEMDPTVINSITHELETAQNNLHGDQKLAHAQQDAANVINGLIHLNVAQREVMINTNTNATTREKVAKNLDNAQALDKAMETLQQVVAHKNNILNDSKYLNEDSKYQQQYDRVIADAEQLLNQTTNPTLEPYKVDIVKDNVLANEKILFGAEKLSYDKSNANDEIKHMNYLNNAQKQSIKDMISHAALRTEVKQLLQQAKILDEAMKSLEDKTQVVITDTTLPNYTEASEDKKEKVDQTVSHAQAIIDKINGSNVSLDQVRQALEQLTQASENLDGDQRVEEAKVHANQTIDQLTHLNSLQQQTAKESVKNATKLEEIATVSNNAQALNKVMGKLEQFINHADSVENSDNYRQADDDKIIAYDEALEHGQDIQKTNATQNETKQALQQLIYAETSLNGFERLNHARPRALEYIKSLEKINNAQKSALEDKVTQSHDLLELEHIVNEGTNLNDIMGELANAIVNNYAPTKASINYINADNLRKDNFTQAINNARDALNKTQGQNLDFNAIDTFKDDIFKTKDALNGIERLTAAKSKAEKLIDSLKFINKAQFTHANDEIINTNSIAQLSRIVNQAFDLNDAMKSLRDELNNQAFPVQASSNYINSDEDLKQQFDHALSNARKVLAKENGKNLDEKQIQGLKQVIEDTKDALNGIQRLSKAKAKAIQYVQSLSYINDAQRHIAENNIHNSDDLSSLANTLSKASDLDNAMKDLRDTIESNSTSVPNSVNYINADKNLQIEFDEALQQASATSSKTSENPATIEEVLGLSQAIYDTKNALNGEQRLATEKSKDLKLIKGLKDLNKAQLEDVTNKVNSANTLTELSQLTQSTLELNDKMKLLRDKLKTLVNPVKASLNYRNADYNLKRQFNKALKEAKGVLNKNSGTNVNINDIQHLLTQIDNAKDQLNGERRLKEHQQKSEVFIIKELDILNNAQKAAIINQIRASKDIKIINQIVDNAIELNDAMQGLKEHVAQLTATTKDNIEYLNADEDHKLQYDYAINLANNVLDKENGTNKDANIIIGMIQNMDDARALLNGIERLKDAQTKAHNDIKDTLKRQLDEIEHANATSNSKAQAKQMVNEEARKALSNINDATSNDLVNQAKDEGQSAIEHIHADELPKAKLDANQMIDQKVEDINHLISQNPNLSNEEKNKLISQINKLVNGIKNEIQQAINKQQIENATTKLDEVIETTKKLIIAKAEAKQMIKELSQKKRDAINNNTDLTPSQKAHALADIDKTEKDALQHIENSNSIDDINNNKEHAFNTLAHIIIWDTDQQPLVFELPELSLQNALVTSEVVVHRDETISLESIIGAMTLTDELKVNIVSLPNTDKVADHLTAKVKVILADGSYVTVNVPVKVVEKELQIAKKDAIKTIDVLVKQKIKDIDSNNELTSTQREDAKAEIERLKKQAIDKVNHSKSIKDIETVKRTDFEEIDQFDPKRFTLNKAKKDIITDVNTQIQNGFKEIETIKGLTSNEKTQFDKQLTALQKEFLEKVEHAHNLVELNQLQQEFNNRYKHILNQAHLLGEKHIAEHKLGYVVVNKTQQILNNQSASYFIKQWALDRIKQIQLETMNSIRGAHTVQDVHKALLQGIEQILKVNVSIINQSFNDSLHNFNYLHSKFDARLREKDVANHIVQTETFKEVLKGTGVEPGKINKETQQPKLHKNDNDSLFKHLVDNFGKTVGVITLTGLLSSFWLVLAKRRKKEEEEKQSIKNHHKDIRLSDTDKIDPIVITKRKIDKEEQIQNDDKHSIPVAKHKKSKEKQLSEEDIHSIPVVKRKQNSDNKDTKQKKVTSKKKKTPQSTKKVVKTKKRSKK", "sequence_length": 9439, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a102d1a99a25c12523424d5ab394db7e0030c15e0e5aa7a644b3a0446753284d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5HPA2.json", "taxon_id": "176279", "uniprot_accession": "Q5HPA2", "uniprot_release": "2026_03" } ], "pfam_id": "PF07564", "short_name": "DUF1542", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07566", "short_name": "DUF1543", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-terminal-domain-of-tata-binding-protein-tbp-associated-factor-6-taf6-cd08050.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd08050", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-terminal-domain-of-tata-binding-protein-tbp-associated-factor-6-taf6-cd08050.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/histone-fold-domain-found-in-transcription-initiation-factor-tfiid-sub-cd22931.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22931", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/histone-fold-domain-found-in-transcription-initiation-factor-tfiid-sub-cd22931.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/taf6-c-terminal-heat-repeat-domain-ipr011442.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011442", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/taf6-c-terminal-heat-repeat-domain-ipr011442.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/taf6-c-terminal-heat-repeat-domain-superfamily-ipr046344.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/taf6-c-terminal-heat-repeat-domain-1-25-40-770.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.25.40.770", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/taf6-c-terminal-heat-repeat-domain-1-25-40-770.yaml" } ], "pfam_ids": [ "PF02969", "PF07571" ], "protein_name": "Transcription initiation factor TFIID subunit 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSIVPKETVEVIAQSIGITNLLPEAALMLAPDVEYRVREIMQEAIKCMRHSKRTTLTASDVDGALNLRNVEPIYGFASGGPFRFRKAIGHRDLFYTDDREVDFKDVIEAPLPKAPLDTEIVCHWLAIEGVQPAIPENAPLEVIRAPAETKIHEQKDGPLIDVRLPVKHVLSRELQLYFQKIAELAMSKSNPPLYKEALVSLASDSGLHPLVPYFTNFIADEVSNGLNDFRLLFNLMHIVRSLLQNPHIHIEPYLHQLMPSVVTCLVSRKLGNRFADNHWELRDFAANLVSLICKRYGTVYITLQSRLTRTLVNALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSLLEPELNAEKQKNQMKIYEAWRVYGALLRAAGLCIHGRLKIFPPLPSPSPSFLHKGKGKGKIISTDPHKRKLSVDSSENQSPQKRLITMDGPDGVHSQDQSGSAPMQVDNPVENDNPPQNSVQPSSSEQASDANESESRNGKVKESGRSRAITMKAILDQIWKDDLDSGRLLVKLHELYGDRILPFIPSTEMSVFL", "sequence_length": 549, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fca91d230c3d46a7394787b817286ee0b589bdfada7ff12c908a25d8e2266be7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9MAU3.json", "taxon_id": "3702", "uniprot_accession": "Q9MAU3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-terminal-domain-of-tata-binding-protein-tbp-associated-factor-6-taf6-cd08050.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/histone-fold-domain-found-in-taf6-like-rna-polymerase-ii-p300-cbp-asso-cd22932.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22932", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/histone-fold-domain-found-in-taf6-like-rna-polymerase-ii-p300-cbp-asso-cd22932.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/taf6-c-terminal-heat-repeat-domain-ipr011442.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011442", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/taf6-c-terminal-heat-repeat-domain-ipr011442.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tata-box-binding-protein-associated-factor-taf-histone-like-fold-domai-ipr004823.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR004823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tata-box-binding-protein-associated-factor-taf-histone-like-fold-domai-ipr004823.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/taf-pf02969.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/taf-pf02969.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/taf6-c-terminal-heat-repeat-domain-superfamily-ipr046344.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046344", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/taf6-c-terminal-heat-repeat-domain-superfamily-ipr046344.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/taf6-c-pf07571.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07571", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/taf6-c-pf07571.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02969", "PF07571" ], "protein_name": "TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8e470b48a9f9cc96c42a4e91ddcfd867c219511cc17bdc44668631b99b828fcd", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSEREERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPAREGELYFPEDREVNLVELALATNIPKGCAETAVRVHVSYLDGKGNLAPQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQDLQTNSKIGALLPYFVYVVSGVKSVSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVGSVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADPVRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNAQVKADGHKVYGAILVAVERLLKMKAQAAEPNRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSPASRYVQKLPMIGRTSRPARRWALSDYSLYLPL", "sequence_length": 622, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8e470b48a9f9cc96c42a4e91ddcfd867c219511cc17bdc44668631b99b828fcd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y6J9.json", "taxon_id": "9606", "uniprot_accession": "Q9Y6J9", "uniprot_release": "2026_03" } ], "pfam_id": "PF07571", "short_name": "TAF6_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1547-pf07577.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07577", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1547-pf07577.yaml" } ], "pfam_ids": [ "PF07577" ], "protein_name": "Translocated actin-recruiting phosphoprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTNSISGYQPTVTTSTSSTTSASGASGSLGASSVSTTANATVTQTANATNSAATSSIQTTGETVVNYTNSASAPNVTVSTSSSSTQATATSNKTSQAVAGKITSPDTSESSETSSTSSSDHIPSDYDDVGSNSGDISNNYDDVGSNNGDISSNYDDAAADYEPIRTTENIYESIGGSRTSGPENTSGGAAAALNSLRGSSYSNYDDAAADYEPIRTTENIYESIGGSRTSGPENTSGGAAAALNSLRGSSYSNYDDAAADYEPIRTTENIYESIGGSRTSGPENTSDGAAAAALNSLRGSSYTTGPRNEGVFGPGPEGLPDMSLPSYDPTNKTSLLTFLSNPHVKSKMLENSGHFVFIDTDRSSFILVPNGNWDQVCSIKVQNGKTKEDLDIKDLENMCAKFCTGFSKFSGDWDSLVEPMVSAKAGVASGGNLPNTVIINNKFKTCVAYGPWNSQEASSGYTPSAWRRGHRVDFGGIFEKANDFNKINWGTQAGPSSEDDGISFSNETPGAGPAAAPSPTPSSIPIINVNVNVGGTNVNIGDTNVNTTNTTPTTQSTDASTDTSDIDDINTNNQTDDINTTDKDSDGAGGVNGDISETESSSGDDSGSVSSSESDKNASVGNDGPAMKDILSAVRKHLDVVYPGENGGSTEGPLPANQTLGDVISDVENKGSAQDTKLSGNTGAGDDDPTTTAAVGNGAEEITLSDTDSGIGDDVSDTASSSGDESGGVSSPSSESNKNTAVGNDGPSGLDILAAVRKHLDKVYPGDNGGSTEGPLQANQTLGDIVQDMETTGTSQETVVSPWKGSTSSTESAGGSGSVQTLLPSPPPTPSTTTLRTGTGATTTSLMMGGPIKADIITTGGGGRIPGGGTLEKLLPRIRAHLDISFDAQGDLVSTEEPQLGSIVNKFRQETGSRGILAFVESAPGKPGSAQVLTGTGGDKGNLFQAAAAVTQALGNVAGKVNLAIQGQKLSSLVNDDGKGSVGRDLFQAAAQTTQVLSALIDTVG", "sequence_length": 1005, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d539163d1ec2e606611ad3176ff87086185867b170e94daac6914a8069538acc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O84462.json", "taxon_id": "272561", "uniprot_accession": "O84462", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis serovar L2 (strain ATCC VR-902B / DSM 19102 / 434/Bu)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1547-pf07577.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07577", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1547-pf07577.yaml" } ], "pfam_ids": [ "PF07577" ], "protein_name": "Translocated actin-recruiting phosphoprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTNSISGDQPTVTTFTSSTTSASGASGSLGASSVSTTANATVTQTANATNSAATSSIQTTGETVVNYTNSASAPTVTVSTSSSSTQATATSNKTSQAVAGKITSPDTSESSETSSTSSSDHIPSDYEPISTTENIYENIYESIDDSSTSGPENTSGGAAALNSLRGSSYSNYDDAAADYEPISTTENIYESIDDSSTSDPENTSGGAAALNSLRGSSYSNYDDAAADYEPISTTENIYENIYESIDDSSTSGPENTSGGAAALNSLRGSSYSNYDDAAADYEPISTTENIYESIDDSSTSDPENTSGGAAAALNSLRGSSYSNYDDAAADYEPISTTENIYESIDDSSTSDPENTSGGAAALNSLRGSSYSNYDDAAADYEPISTTENIYENIYESIDGSSTSDPENTSGGAAAALNSLRGSSYTTGPRNEGVFGPGPEGLPDMSLPSYDPTNKTSLLTFLSNPHVKSKMLENSGHFVFIDTDRSSFILVPNGNWDQVCSIKVQNGKTKEDLDIKDLENMCAKFCTGFNKFSGDWDSRVEPMMSAKAGVASGGNLPNTVIINNKFKTCVAYGPWNSREASSGYTPSAWRRGHQVNFGEIFEKANDFNKINWGTQAGPSSEDDGISFSNETPGAGPAAAPSPTPSSIPVINVNVNVGGTNVNIRDTNVNTTNTTPTTQSTDASTDTSDIDNINTNNQTDDINTTDKDSDGAGGVNGDISETESSSGDDSGSVSSSESDKNASVGNDGPAMKDILSAVRKHLDVVYPGDNGGSTEGPLQANQTLGDIVQDMETTGTSQETVVSPWKGSTSSTGSAGGSGSVQTLLPSPPPTPSTTTLRTGTGATTTSLMMGGPIKADIITTGGGGRIPGGGTLEKLLPRIRAHLDISFDGQGDLVSTEEPQLGSIVNKFRKETGSGGIVASVESAPGKPGSAQVLTGTGGDKGNLFQAAAAVTQALGNVAGKVNLAIQGQKLSSLVNDDGKGSVGRDLFQAATQTTQALSSLIDTVG", "sequence_length": 1005, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eab72170da8cb4f7a99e44f6ed7508641bf3bbcd383e73ef1a1bbfe9cdacf398", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6GX35.json", "taxon_id": "471472", "uniprot_accession": "Q6GX35", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia muridarum (strain MoPn / Nigg)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1547-pf07577.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07577", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1547-pf07577.yaml" } ], "pfam_ids": [ "PF07577" ], "protein_name": "Uncharacterized protein TC_0741", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTPISNSPSSIPTVTVSTTTASSGSLGTSTVSSTTTSTSVAQTATTTSSASTSIIQSSGENIQSTTGTPSPITSSVSTSAPSPKASATANKTSSAVSGKITSQETSEESETQATTSDGEVSSNYDDVDTPTNSSDSTVDSDYQDVETQYKTISNNGENTYETIGSHGEKNTHVQESHASGTGNPINNQQEAIRQLRSSTYTTSPRNENIFSPGPEGLPNMSLPSYSPTDKSSLLAFLSNPNTKAKMLEHSGHLVFIDTTRSSFIFVPNGNWDQVCSMKVQNGKTKEDLGLKDLEDMCAKFCTGYNKFSSDWGNRVDPLVSSKAGIESGGHLPSSVIINNKFRTCVAYGPWNPKENGPNYTPSAWRRGHRVDFGKIFDGTAPFNKINWGSSPTPGDDGISFSNETIGSEPFATPPSSPSQTPVINVNVNVGGTNVNIGDTNVSKGSGTPTSSQSVDMSTDTSDLDTSDIDTNNQTNGDINTNDNSNNVDGSLSDVDSRVEDDDGVSDTESTNGNDSGKTTSTEENGDPSGPDILAAVRKHLDTVYPGENGGSTEGPLPANQNLGNVIHDVEQNGSAKETIITPGDTGPTDSSSSVDADADVEDTSDTDSGIGDDDGVSDTESTNGNNSGKTTSTEENGDPSGPDILAAVRKHLDTVYPGENGGSTEGPLPANQNLGNVIHDVEQNGAAQETIITPGDTESTDTSSSVNANADLEDVSDADSGFGDDDGISDTESTNGNDSGKNTPVGDGGTPSGPDILAAVRKHLDTVYPGENGGSTERPLPANQNLGDIIHDVEQNGSAKETVVSPYRGGGGNTSSPIGLASLLPATPSTPLMTTPRTNGKAAASSLMIKGGETQAKLVKNGGNIPGETTLAELLPRLRGHLDKVFTSDGKFTNLNGPQLGAIIDQFRKETGSGGIIAHTDSVPGENGTASPLTGSSGEKVSLYDAAKNVTQALTSVTNKVTLAMQGQKLEGIINNNNTPSSIGQNLFAAARATTQSLSSLIGTVQ", "sequence_length": 1007, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8172ba9e5f454011b1bfba61b8a020315de56a9c8cbdc025e717d17186b5b8b2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9PJT6.json", "taxon_id": "243161", "uniprot_accession": "Q9PJT6", "uniprot_release": "2026_03" } ], "pfam_id": "PF07577", "short_name": "DUF1547", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07579", "short_name": "DUF1548", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07583", "short_name": "PSCyt2", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bata-pf07584.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07584", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bata-pf07584.yaml" } ], "pfam_ids": [ "PF07584", "PF13519" ], "protein_name": "UPF0353 protein MRA_1491", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLPLLGPMTLSGFAHSWFFLFLFVVAGLVALYILMQLARQRRMLRFANMELLESVAPKRPSRWRHVPAILLVLSLLLFTIAMAGPTHDVRIPRNRAVVMLVIDVSQSMRATDVEPSRMVAAQEAAKQFADELTPGINLGLIAYAGTATVLVSPTTNREATKNALDKLQFADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLFSDGKETMPTNPDNPKGAYTAARTAKDQGVPISTISFGTPYGFVEINDQRQPVPVDDETMKKVAQLSGGNSYNAATLAELRAVYSSLQQQIGYETIKGDASVGWLRLGALALALAALAALLINRRLPT", "sequence_length": 335, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4751abdd2a3d9e643687f16b214172a97dcb8f32bbe7f9d68c7089f606cf8bc0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5U2I5.json", "taxon_id": "419947", "uniprot_accession": "A5U2I5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bata-pf07584.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07584", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bata-pf07584.yaml" } ], "pfam_ids": [ "PF07584", "PF13519" ], "protein_name": "UPF0353 protein MT1528", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLPLLGPMTLSGFAHSWFFLFLFVVAGLVALYILMQLARQRRMLRFANMELLESVAPKRPSRWRHVPAILLVLSLLLFTIAMAGPTHDVRIPRNRAVVMLVIDVSQSMRATDVEPSRMVAAQEAAKQFADELTPGINLGLIAYAGTATVLVSPTTNREATKNALDKLQFADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLFSDGKETMPTNPDNPKGAYTAARTAKDQGVPISTISFGTPYGFVEINDQRQPVPVDDETMKKVAQLSGGNSYNAATLAELRAVYSSLQQQIGYETIKGDASVGWLRLGALALALAALAALLINRRLPT", "sequence_length": 335, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4751abdd2a3d9e643687f16b214172a97dcb8f32bbe7f9d68c7089f606cf8bc0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WFJ6.json", "taxon_id": "83331", "uniprot_accession": "P9WFJ6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bata-pf07584.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07584", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bata-pf07584.yaml" } ], "pfam_ids": [ "PF07584", "PF13519" ], "protein_name": "UPF0353 protein Rv1481", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLPLLGPMTLSGFAHSWFFLFLFVVAGLVALYILMQLARQRRMLRFANMELLESVAPKRPSRWRHVPAILLVLSLLLFTIAMAGPTHDVRIPRNRAVVMLVIDVSQSMRATDVEPSRMVAAQEAAKQFADELTPGINLGLIAYAGTATVLVSPTTNREATKNALDKLQFADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLFSDGKETMPTNPDNPKGAYTAARTAKDQGVPISTISFGTPYGFVEINDQRQPVPVDDETMKKVAQLSGGNSYNAATLAELRAVYSSLQQQIGYETIKGDASVGWLRLGALALALAALAALLINRRLPT", "sequence_length": 335, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4751abdd2a3d9e643687f16b214172a97dcb8f32bbe7f9d68c7089f606cf8bc0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WFJ7.json", "taxon_id": "83332", "uniprot_accession": "P9WFJ7", "uniprot_release": "2026_03" } ], "pfam_id": "PF07584", "short_name": "BatA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07585", "short_name": "BBP7", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07586", "short_name": "HXXSHH", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07587", "short_name": "PSD1", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07588", "short_name": "DUF1554", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Nostoc sp. (strain HG1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/pep-exosort-dom-pf07589.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07589", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/pep-exosort-dom-pf07589.yaml" } ], "pfam_ids": [ "PF07589", "PF11999" ], "protein_name": "Ice-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKINRKYAIILAIVAFSSFQTEAKAASISMLGTASNFGVLGGSTVTNTGPSVITESLGVSTGSSATGFPPAIVNGTIFTSDTVAAQAQVDNATAYNKLASLIPNKDLTGLDLGGLTLTPGVYSFSSSAQLTGILTLDNLGDPNALFVFQIGSTLTTASNSSIVTTNGDAPNVFFQIGSSATLGTGTQFMGNILALTSITLTTGVNIDCGRALAQNGAVTMDTNKVSNACYTKPQEKAVVPEPDSSLAVLGSGLVSLLFAFRKRFRKGW", "sequence_length": 269, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9b40fcc775d7afba0f83f047cace66f200287b97cfdda78a7860ebf02fd365a3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A7D5JNZ7.json", "taxon_id": "2593659", "uniprot_accession": "A0A7D5JNZ7", "uniprot_release": "2026_03" } ], "pfam_id": "PF07589", "short_name": "PEP_exosort_dom", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07591", "short_name": "PT-HINT", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07596", "short_name": "SBP_bac_10", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07598", "short_name": "DUF1561", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07599", "short_name": "DUF1563", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07600", "short_name": "DUF1564", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07602", "short_name": "DUF1565", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07603", "short_name": "Lcl_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07606", "short_name": "DUF1569", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07607", "short_name": "DUF1570", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07608", "short_name": "DUF1571", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07609", "short_name": "DUF1572", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07610", "short_name": "DUF1573", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07611", "short_name": "DUF1574", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07613", "short_name": "DUF1576", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07614", "short_name": "DUF1577", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07617", "short_name": "DUF1579", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07618", "short_name": "DUF1580", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07619", "short_name": "DUF1581", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07621", "short_name": "DUF1582", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07622", "short_name": "DUF1583", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07624", "short_name": "PSD2", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07626", "short_name": "PSD3", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07627", "short_name": "PSCyt3", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07628", "short_name": "DUF1589", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07631", "short_name": "PSD4", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07632", "short_name": "Sde182_NH-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07637", "short_name": "PSD5", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aquifex aeolicus (strain VF5)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bbp2-pf07642.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07642", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bbp2-pf07642.yaml" } ], "pfam_ids": [ "PF07642" ], "protein_name": "Uncharacterized protein aq_113", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKYVLPLLFLSSLSLAEEKSLYLKVSQPLELYGGISAGYFYTTNEDGKDSSDKLQITNAILGLKAEVGEKIRFGFDLAVGGSLWSTVWDGGQGDFSYYDPDEKELKEGVGLHWGYAYLKPFKGFEVSAGVLTTNIGYELADTYSNPNVTFGAVWYAQPFIYPGVRLTLDFSEIADLPVSLYAEYNQEYDLDNYAVGILGELGNLSYALSYYDYRASKNLVDLVLGYTIFNVDLGLNFDYQWLDDSAKSAGQDDSAYGVALYVIPKFETKYGEFSLPLRLEYFDEGSSGIYFGGADKGYTLTVTPTFRPTPNTYVRAEVSYVNTDNKVFKNGTKDNKTTLAVELGFTF", "sequence_length": 348, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9896e5d7f2649871afd0c5705aa1262c3caf672e269f90b758e3ffd0b3d99508", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O66516.json", "taxon_id": "224324", "uniprot_accession": "O66516", "uniprot_release": "2026_03" } ], "pfam_id": "PF07642", "short_name": "BBP2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07643", "short_name": "DUF1598", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07659", "short_name": "DUF1599", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1600-pf07667.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07667", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1600-pf07667.yaml" } ], "pfam_ids": [ "PF07667" ], "protein_name": "Uncharacterized protein MG133", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKKSIGIFYRCFYLNNKCDYYLIFLAPFSLFTQIFMVITALISVANSGQMSLIWFTNFDTFTYQSNSLAIFLVWYYFLNHKSRWFENSSLVLSVTGYLVFTVIFFNFYALSRFTGIVNIEPDVQGWFSTITTQLPYSFNGSFINDWNAFSELLLHVIHPLFYFIYVGLLFKTYKFIKPPRNLQSFLLKAGIYPSIYAFYLQTIPFLNVWDNGENSYSVYGFFTQTKYNSYVWIWSIPIFASMFLILWMLFVINNHYYGKKHHK", "sequence_length": 264, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6d2e74e50d268fc9825929c8646c39f5b56207f7fcf5a5800a797bac96040420", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P47379.json", "taxon_id": "243273", "uniprot_accession": "P47379", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1600-pf07667.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07667", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1600-pf07667.yaml" } ], "pfam_ids": [ "PF07667" ], "protein_name": "Uncharacterized protein MG452 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEQNNCKIRTWFAKLALAQKVFLGVIPLFFICFVFVIADIVISLQNKGHIIEEIDKFTNQSNVMLLIYACWYVSKPKSHYLKNQQFFLSAFAYIIFTFLGYNVILAASQQAYSDKDAYSLASSVFLHVLAPIAFLVAGIVKMKTDKDVTFNHFWKSLGYFMIYPLVYGLYLATIPYVRGHYVSDDGKSTTYVVYGEITNTKDNPIVAWPVVICFLFIYFPLSFLAVYALQCKLLNRPLKAQFKCATNKCPK", "sequence_length": 251, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c1d03d3884aef26d64cc9da12e2693449363640794924be98650ba7ff47fcdd8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75125.json", "taxon_id": "272634", "uniprot_accession": "P75125", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1600-pf07667.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07667", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1600-pf07667.yaml" } ], "pfam_ids": [ "PF07667" ], "protein_name": "Uncharacterized protein MG133 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKTIGLAYRFFYLNNNCDFYLLFLAPFSLFNLGVMVASAVISVVYNNQPQLIWFTNFDTFTYQSNTIAAVCVLMYLCKRRCKLFDNNALFLSAAGYLVFTVIFFNLYVLSRVTGFVNVEEHVKGWFSTITSEMPYSFSGNPLTDWISFAQLFLHVIYPASFFGFIWIFFKTYKMREPLHELGKFLLKAGVYPSLYAFYLQTVPFLKIWDNGHDSYSVYGFFSQTKYNSYVWFWSIPIFASMFLILWGLFVINNRYYGAKTKYGKQ", "sequence_length": 266, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9523ed9c4c6993e255a32e9e663a81800a7f95d6a3456d3cb17042b13eb3e154", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75503.json", "taxon_id": "272634", "uniprot_accession": "P75503", "uniprot_release": "2026_03" } ], "pfam_id": "PF07667", "short_name": "DUF1600", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07671", "short_name": "DUF1601", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cardb-domain-ipr011635.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011635", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cardb-domain-ipr011635.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cardb-pf07705.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07705", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cardb-pf07705.yaml" } ], "pfam_ids": [ "PF07705" ], "protein_name": "Uncharacterized protein MJ0795", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRLKNLFIIFIFLFLLSQVSAYITFKNIDYNAQYLEPSKTYDLYITIESDKEINNTVVYIEPTNQISKENIEIIRGKQWIGHLFPYEYGVAHLIIKINPNAPNYDYKITGYCNYTKGNQQYSENRIFTLPVRGKANLVIETTNNILKVGNNQILLLLTNKGTGTAENIKIEFQNSNNLMVLGDNTFTISALGSKTSTYIPLTIFAKKEGVYSINYKISYKNPYNLLELTQKSETIEGDSKTETLTYQNKNIVEETGILTFNVFPNELISINIKNPTITVGKIENLTISIKNNYKDSLFVVQISKYFIGNNQKSIFIKKGETKNLTFQIKVDKEGVTSIPIVIYFDNNQIEKNLTINVVGKADLVLSGIDIESSFNEIKITGDIDNIGTGKAKSVLISIEKTKNIIPKKPYENYFVGTLNPDDYGSFELHCQINGNVNEIPLKISYRDEDNNLITIYKTVKISKEVVSLKTNNNGGINYLVVGIAILFCVGVVYLIYRGFVKKK", "sequence_length": 504, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "da7cc5a0fe8c3d771da2df0ad2ea851660e13ba7055ec0e4a3e769aeb9367954", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58205.json", "taxon_id": "243232", "uniprot_accession": "Q58205", "uniprot_release": "2026_03" } ], "pfam_id": "PF07705", "short_name": "CARDB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/g-patch-domain-containing-protein-n-terminal-ipr011666.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011666", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/g-patch-domain-containing-protein-n-terminal-ipr011666.yaml" } ], "pfam_ids": [ "PF01585", "PF07713", "PF26093" ], "protein_name": "G patch domain-containing protein 1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNRKKLAAYGQEFEDDDEEGSSVSKKPTQIHEEIATDEKGKRRFHGAFTGGFSAGYWNTVGSKQGWVPQVFSSSRNERGEQIKQRAEDFMDAEDLGEYGIGNRSIKQTAAFGEGAGQKRKMAWERDTTSISTITQMFEDVVKPVSNSIGVRMLRSMGWREGRGIGLANVKQKQKRGGESSEAQFDREQASKVAPAYEFSNEDALVKQLTPLTGTHGIGYQGLRKTTVLNESYGRTTLALKSGKKNSKGIKGQAFGVGAFEEEDESVYSNYDLSQFDFSLDVAGASEESNLKTQKLVTAFELQPKRLNPRKFYAPPRVPPNFRGDHRPIPMDISKLPQMMKNDVKHMNAEQRAKFLGEDRVNALEIGGKSSKKPTERRSRWDIKANEVEKRDNERGGGEAEEDRDRRQRNRIEFPDEPMRQARFKEFLHYIRRGLPYPQPTDLTVWEWEWEKKEFESKLTSDERGMLPEVQSRAQPLAKTAIAAPIHEMMASKFVKEAGGDLKVGTKDEDKLAAVKMEMFGEKTRQSFDWYPDNLLAKRFNVPHPYPGSDTVGVPALQKTDWKRKDRLADIGGVSATLGLPNTANEIEMRERLLKSRAQRGAEEKKRNQSDDDDEKEYDDKDSDEEEENEAEPNNQKVDKAPKSFFDFIFGDGDGADSDESNSEDEEAEEKERQEILKKREEDLKRRREIVEKKEEENRKRVEKELKELENRDLLRVSKQQEDDDIQIIDETSASSFGPALPPSSKPVLSKTEVLKLLEKNMKKKKKDKKEKEKKKKSKKSKKSKKEKKTKRKHSSSSADDSGDNSDGWEEKK", "sequence_length": 812, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "18592fd1a26fbd88a861e8e4216d94ebce68c1ee3c2ff9c44676c5a083eaead2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q21827.json", "taxon_id": "6239", "uniprot_accession": "Q21827", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/g-patch-domain-containing-protein-n-terminal-ipr011666.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011666", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/g-patch-domain-containing-protein-n-terminal-ipr011666.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/swap-surp-ipr000061.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR000061", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/swap-surp-ipr000061.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1604-pf07713.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07713", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1604-pf07713.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-tgh-pf26093.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26093", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-tgh-pf26093.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/surp-pf01805.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01805", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/surp-pf01805.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/swap-surp-superfamily-ipr035967.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035967", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/swap-surp-superfamily-ipr035967.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/surp.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50128", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/surp.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/surp-module-1-10-10-790.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.10.790", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/surp-module-1-10-10-790.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8GXN9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01805", "PF07713", "PF26093" ], "protein_name": "G patch domain-containing protein TGH", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1d8e7eeffaa6d459a64820bdfdaa24a33b742532a5e61699e82f360a74584011", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGSDEEDFVFHGTPIEREEEIASRKKKAVAGASGNLRTLPAWKQEVTDEEGRRRFHGAFTGGYSAGYYNTVGSKEGWAPQSFTSSRQNRAGARKQSISDFLDEDEKADMEGKSLSASSQFDTFGFTAAEHSRKHAEKEQHERPSAIPGPVPDELVAPVSESIGVKLLLKMGWRRGHSIKEVRASSDARREARKAFLAFYTDENTKETPDSLVSETEVETSLGEDIKISESTPVYVLNPKQDLHGLGYDPFKHAPEFREKKRSRMSANKEVGFRKPLSMKESLFGPKSGKIAPGFGIGALEELDVEDEDVYAGYDFDQTYVIEDEQPARQSNDNRLRLTSKEHDVLPGFGAAKNSDYSMERFNPPIIPKDFVARHKFSGPLEAETKPTVSAPPEVPPPADNNLKLLIEGFATFVSRCGKLYEDLSREKNQSNQLFDFLREGNGHDYYARRLWEEQQKRKDQSKLTLDVKVSPTVQKMTAETRGSLLGEKPLQRSLKETDTSASSGGSFQFPTNLSDTFTKSASSQEAADAVKPFKDDPAKQERFEQFLKEKYKGGLRTTDSNRVNSMSESARAQERLDFEAAAEAIEKGKAYKEVRRATEQPLDFLAGGLQFTSGGTEQIKDTGVVDMKSSKTYPKREEFQWRPSPLLCKRFDLPDPFMGKLPPAPRARNKMDSLVFLPDTVKAASARQVSESQVPKKETSIEEPEVEVEVENVERPVDLYKAIFSDDSEDDEDQPMNGKIQEGQEKKNEAAATTLNRLIAGDFLESLGKELGFEVPMEEEIKSRSKPEDSSDKRLDRPGLKEKVEEKTSSLTLGSEEEKSRKKREKSPGKRSGGNDLSSSESSGDERRRKRYNKKDRHRNDSESDSSSDYHSRDKQGSRSRSKRRESSREKRSSHKKHSKHRRTKKSSSSRYSSDEEQKESRREKKRRRD", "sequence_length": 930, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "1d8e7eeffaa6d459a64820bdfdaa24a33b742532a5e61699e82f360a74584011", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8GXN9.json", "taxon_id": "3702", "uniprot_accession": "Q8GXN9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/g-patch-domain-containing-protein-n-terminal-ipr011666.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011666", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/g-patch-domain-containing-protein-n-terminal-ipr011666.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1604-pf07713.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07713", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1604-pf07713.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-tgh-pf26093.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26093", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-tgh-pf26093.yaml" } ], "pfam_ids": [ "PF01585", "PF07713", "PF26093" ], "protein_name": "G patch domain-containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAARDSDSEEDLVSYGTGLEPLEEGERPKKPIPLQDQTVRDEKGRYKRFHGAFSGGFSAGYFNTVGSKEGWTPSTFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKAIVTTDDFASKTKDRIREKARQLAAATAPIPGATLLDDLITPAKLSVGFELLRKMGWKEGQGVGPRVKRRPRRQKPDPGVKIYGCALPPGSSEGSEGEDDDYLPDNVTFAPKDVTPVDFTPKDNVHGLAYKGLDPHQALFGTSGEHFNLFSGGSERAGDLGEIGLNKGRKLGISGQAFGVGALEEEDDDIYATETLSKYDTVLKDEEPGDGLYGWTAPRQYKNQKESEKDLRYVGKILDGFSLASKPLSSKKIYPPPELPRDYRPVHYFRPMVAATSENSHLLQVLSESAGKATPDPGTHSKHQLNASKRAELLGETPIQGSATSVLEFLSQKDKERIKEMKQATDLKAAQLKARSLAQNAQSSRAQLSPAAAAGHCSWNMALGGGTATLKASNFKPFAKDPEKQKRYDEFLVHMKQGQKDALERCLDPSMTEWERGRERDEFARAALLYASSHSTLSSRFTHAKEEDDSDQVEVPRDQENDVGDKQSAVKMKMFGKLTRDTFEWHPDKLLCKRFNVPDPYPDSTLVGLPRVKRDKYSVFNFLTLPETASLPTTQASSEKVSQHRGPDKSRKPSRWDTSKHEKKEDSISEFLSLARSKAEPPKQQSSPLVNKEEEHAPELSANQTVNKDVDAQAEGEGSRPSMDLFRAIFASSSDEKSSSSEDEQGDSEDDQAGSGEANFQSSQDTDLGETSSVAHALVPAPQEPPPSFPIQKMQIDEREEFGPRLPPVFCPNARQTLEVPQKEKHKKNKDKHKAKKEHRRKKEKKKKHRKHKHKGKQKNKKPEKSSSSESSDSSDSQSDEETADVSPQELLRRLKSLPLRRQ", "sequence_length": 931, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "71b9f64e6762ee53455e7c6acc5e32d902f57f9dd4be0f9970262da81af78aa4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BRR8.json", "taxon_id": "9606", "uniprot_accession": "Q9BRR8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/g-patch-domain-containing-protein-n-terminal-ipr011666.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011666", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/g-patch-domain-containing-protein-n-terminal-ipr011666.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1604-pf07713.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07713", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1604-pf07713.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-tgh-pf26093.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26093", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-tgh-pf26093.yaml" } ], "pfam_ids": [ "PF01585", "PF07713", "PF26093" ], "protein_name": "G patch domain-containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAALDSDSDEDLISYGTGLEPLDEGERPKKPIPLQDQTVRDEKGRYKRFHGAFSGGFSAGYFNTVGSKEGWTPSTFVSSRQNRADKSALGPEDFMDEEDLSEFGIAPKAIVTTDDFASKTKDRIREKARQLAAAAAPIPGATLLDDLITPAKLSVGFELLRKMGWKEGQGVGPRVKRKARRQKPDPGVKIYGCALPPGGSEESEDEDDDYLPDNVTFAPKDVMPVDFTPKDNVHGLAYKGLDPHQALFGMPGEHLNLFGGASEGTSHLLGDVGLSKGRKLGISGQAFGVGALEEEDDDIYATETLSKYDTVLKDEEPGDGLYGWTAPKQYKNQKEPERDLRYVGKILEGFSLASKPLSSKKIYPPPQLPRDYRPVHYFRPVVAATAENAHVLQVLSESSGKAGQDVGTHSRHQLNASKRGELLGEMPIQGSATSVLEFLSQKDKERIKEVKQATDLKAAQAKARSLAQSASSSRAQASTPDLGHSSWHLALGGGTVTTRANNFKPFAKDPEKQRRYEEFLVHMKKGQKDALERCLDPSMTEWERSREREEFARAAQLYVSSNSTLSSRFTHAKEEEDSDQVEVPRDQENDVSDKQSAVKMKMFGKLTRDTFEWHPDKLLCKRFNVPDPYPGSTLVGLPRVKRDKYSVFNFLTLPEPAPLPTAPVPSEKAPQQRGSDKSRKPSRWDTSKQEKKEDSISEFLSQARSKVGPPKQESSALGSKEEQAPEPRPDTTVDKAVDAQTDGEGSRPSMDLFKAIFASSSDEKSSSSEEEQDDSEDSQEHTEEASLKGSQEAAAGETSVVLAAEPEPCEPATPFPIQKAQIDEREEFGPRLPPVFCPNSRQKLEIPQKEKPKKSKERHKSKKEHRRKREKKKKHKKHKHKSKQKNKKSEKNSSSESTDSSDSGSDDGGPAELSPQELLRRLKCLPLRRQ", "sequence_length": 930, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fe34287a1d62dd91479778c78ed2e845d67940b4b40186587947150f07e684b8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DBM1.json", "taxon_id": "10090", "uniprot_accession": "Q9DBM1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/g-patch-domain-containing-protein-n-terminal-ipr011666.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011666", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/g-patch-domain-containing-protein-n-terminal-ipr011666.yaml" } ], "pfam_ids": [ "PF01585", "PF07713", "PF26093" ], "protein_name": "G patch domain-containing protein 1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDEEEHLHRFGTPLPALQKDVVPAKKPVAIEDQIVKDENGKRRFHGAFTGGFSAGFWNTVGSLEGWTPQTFKSSRGERASSKAQLKPEDFMDQEDLGEFGIAPQGIRTRDEFANEDEQKQRSDQRRRKLMQPELGVGAIPGLPVLEQLLRPVRDKVAVRILKSMGWKPGQGVGPRQTRKEKRQATARNSKEQYLMEHYGAEGLPSNKENKGEEDSNNEDEDDEDITFAPDDYEPIFYTPKENRFGMSYSGLNRDPILSKSSSSSAKPMQHINLFGEMEAQANKKQLSIRGQAFGVGAFEEEDEDIYARDDMTRYDFSLADKKPKQKKQQHVQQRHVIDGFSEDNSPAVLQRPYAIDLPRDFQPRNWLQRRSRFAPMDKERAQKLETASEYKRSGLGRHDLNPDQRAQILGEQQQEEKTAEEQPKRNPFKDHSKSLMERINARTEGFTKGGVITENGEEQQTELAKEVKEANAAIQERAALKTKDLPSAMNSSSAFKPFIADEAKQLRYEKFVSSKLTDDKEITEFLARMQPVTLSLWDREMEKKEFIQAAKIYRPLVGLMNDRFVSEANVQAEKVEQQEKPPEERKIVMERTKTMWKPTALLCKRYNIAEPFGGAMLEPEKELKAKAKISVFDYLETSVNTKANFETPSIFPKHIEKSIPEKVETPPSPPPAPQPEAEIQDKPNTKEEPSKHTFVPKTPLEQAVDESRNKPISEKVDLFKSIFEDSDEEETELSEQDKLAILQESFGLPVTSTTSAAAQNVLRNTSPPRGIFASLFSPKIKDAAKEPAPTKFGPIEGSKLKIAYKPRKERLRNDRELAMAEVAPEDIYGPKLPTAPPQKPAAPEIQAEANIDDRLQQLWQQHAPKKRKAEKWVEKKCISGSEDSDASSSNESSSSDSSDDNDKRSKLSKPKKSHKGSSSKKSKKSKLKSKKKSKKSEESKHKAKKKKKKSKH", "sequence_length": 952, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7c02f92eea49c3f10121d554c6a6182bb0550fbea9b29cab2b24a7aa7d524601", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VUA0.json", "taxon_id": "7227", "uniprot_accession": "Q9VUA0", "uniprot_release": "2026_03" } ], "pfam_id": "PF07713", "short_name": "DUF1604", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 29, "discovery_scanned": true, "example_count": 29, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Xenopus laevis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsrm-dhx29-pf24385.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24385", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsrm-dhx29-pf24385.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF04408", "PF07717", "PF21010", "PF24385", "PF24899", "PF26026" ], "protein_name": "ATP-dependent RNA helicase dhx29", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGGKNKKNRHGSSTAVQGATAAANRPRAAAEPRPGGEDAAKKQTPRNSNVAPGSKESNKQGPKTYSFASSSDSGVSVNHDKSVLKVVIEAKLEKRIISLINEHKKLNSNKGTVSGRLTSKKLQDLYMALQKLSFKAEHIEEAMTNTVLYGGDLHAALDWLCLNLPDDALPEGFSQQFVEEEQRARAKFQAPPQRPSAANESATEKGEEGASLKGNPELTMKEWILRYAEQGSDDDDDDDDVKEEEKETTLEKFDPNERYLELTAKLLDARAQATATKQDKDKQGQKEAQERIRGYQQEMKSLEDHPLFNPAVKIPEVKSESKQPKPALPPSEDEPLNFNLFEKKENAPEEKAKKKPPLDIRNFDYTSRSWTGKSPKQFLIDWCRKHYSKSPNPSFEKVPVGKYWKSRVKIIKSHDDVMCVCPTIVTEDSMQAQHLAATLALYELTKGQSVHQLLPPTYRNVWLEWSDAEKQVQEQNKTESNKPRDQFITKLLNKLKVQQNQLKSCSQTQMMEDPEDSWENLACDEEQHETCPSPLLPDDLEPIRNIFRKSRDSMKYKRLLNDREQLPVFARGNFILETLKRHRVIVVAGETGSGKSTQVPQFLLEDLLFNGGSPGKCNIVCTQPRRISAMSLATRVCEELGCDSGPGGKNSLCGYQIRMESRTGEATRLLYCTTGILLRKLQEDSMLKNISHIIVDEVHERTVQSDFLLIILREILHKRSDLHLVLMSATVDCEKFSSYFTHCPIIRISGRTFPVEVFHLEDVVEATGFVLEQDSEYCQKFLEDEEEITLSVTGKGGSSKKYQEFIPAQSGTGLDLGARYQRYSSQTRHAVLYMNPNKINLDLILELLVFLDISPEYRNVEGAVLIFLPGLADIQQLYDILSSDKRFHDRRRYKLIALHSILSSQDQAEAFILPPAGTRKIVLATNIAETGITIPDVVFVIDAGRTKENRYHESSQMSSLVETFISKASALQRQGRAGRVRNGYCFRLYTRERFESFMEYSVPEILRVPLEELCLHIMKCDLGSPEDFLSKALDPPQLQVISNAMSLLRKIGACELSQPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDAVATLAATMTEKSPFVTPIGEKDRADLAKSSMAVANSDHVTIFRAYLGWKAIRPEGYAAEMSYCRKNFLNRKALLTIEDVKQELIRLVRAAGFECPRSVEANGLSSAMKALSAEETSLLKAILTAGLYDNVGKILFTKSVDITEKLACIVETAQGKAQVHPSSVNRDLQIYGWLLYQEKVKYSKVFLRETTLISPFPVLLFGGDIAVQHRERLLTVDDWIHFQAPVKIAVIFKELRILIESVLKQKLENPKMSLKDDMILNIIKELIKTER", "sequence_length": 1362, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d2fafe7c7571540eab58772e51152c457074c3d79d19049bba7ea08a7c05340e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A3KMI0.json", "taxon_id": "8355", "uniprot_accession": "A3KMI0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dexh1-3-5-n-pf27261.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27261", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dexh1-3-5-n-pf27261.yaml" } ], "pfam_ids": [ "PF00035", "PF00270", "PF00271", "PF04408", "PF07717", "PF21010", "PF26026", "PF27261" ], "protein_name": "DExH-box ATP-dependent RNA helicase DExH3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQLYSAIFRGHIRPNAVVGAASMFIQHNSIQLHRSPKLLLRPSSVVRSLHCRRSGGLVTHSQRSRVLCVKAARGDASSSTLGIEWRAANLPYFQRQNSGYGRIAYNDYESSDESDRDVGSSQSQQMAGSTLDNIDQWRFKLTMLLRNKEDQEVVSRERKDRRDFDHISALATRMGLHSRQYSKIVVISKAPLPNYRPDLDDKRPQREVVLPFGLQSEVDAHLHSFLDQKKTLIPEMPRQNSSESLANGYGNYETPETVMQNSLARERILRPRSLQLKSKQQQWVDSPEGQKMVGFRKTLPAYKEKDALLKAIAANQVVVVSGETGCGKTTQLPQYILESEIEAARGATCSIICTQPRRISAISVSERVAAERGEQIGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVVVDEIHERGMNEDFLLIVLKDLLPRRPDLKLILMSATLNAELFSSYFGGAPAMHIPGFTYPVRAHFLEDYLETSGYRLTTYNQIDDYGEEKTWKMQKQAQFKKRKSLISSAVEDALEAADFKGYNFRTRDSLSCWSPDSIGFNLIENVLCHIVKGERPGAVLVFMTGWDDINSLKNQLEAHSLLGDPNKVLLLACHGSMASSEQRLIFDRPPEGIRKIVLATNMAETSITINDVVYVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVMPGECYHLYPRCVYEAFADYQQPELLRTPLQSLCLQIKSLGLGSISEFLSRALQPPEALSVQNAVEYLKIIGALDDDENLTPLGKNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAETARSKFSGRDYSDHLTLVRAYNGWKDAERTHSGYDYCWKNFLSSQTLKAMDSMRKQFFNLLKEASLIDNIEGCSKLSHDEHLVRAIICAGMFPGVCSVVNKEKSITLKTMEDGQVLLYSSSVNGNVPMIPFPWLVFNDKVKVNSVFLRDSTAVSDSVLLLFGDKISSGGFDGHLKMLGGYLEFFMKPTLAYTYLSLKRELDELIQNKLVNPKLDIQLYDKLMTAIRLLVSEDQCEGRFVYGRKALSPTPAKKLKDVGAQLQNSGGENNKNQLQTLLARAGHGSPVYKTRQLKNNQFRSMVTFNGLDFMGKPCGSKKNAEKDAAHEALLWLQGESKSSLNDLNHMSMLLKKNKSKNHAKASTKWG", "sequence_length": 1197, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "57db6c80ed77059a06848d8fd826a6758b7f6625a6555f909044ae6419881970", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4HYJ7.json", "taxon_id": "3702", "uniprot_accession": "F4HYJ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dexh1-3-5-n-pf27261.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27261", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dexh1-3-5-n-pf27261.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF04408", "PF07717", "PF21010", "PF26026", "PF27261" ], "protein_name": "DExH-box ATP-dependent RNA helicase DExH1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPHGPNSQGGRRGGGHSSGRRGGRGGGGRGGGGGGRGEQRWWDPVWRAERLRQQQAEMEVLDENEWWNKIEQWKTGGEQEMLIKRNFSRGDQQTLSDMALQMGLYFHAYNKGKALVVSKVPLPDYRADLDERHGSTQKEIKMSTETERKLGSLLKTTQESGSSGASASAFNDQQDRTSTLGLKRPDSASKLPDSLEKEKFSFALKERQEKLKATESVKALKAFREKLPAFKMKEEFLNSVSQNQVLVVSGETGCGKTTQLPQFILEEEISSLRGADCNIICTQPRRISAISVASRISAERGESIGESVGYQIRLESKRSDQTRLLFCTTGVLLRRLIEDPNLTNVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADMFSTYFGNSPTMHIPGFTFPVAELFLEDVLEKSRYNIKSSDSGNYQGSSRGRRRESESKKDDLTTLFEDIDINSHYKSYSSATRNSLEAWSGAQIDVDLVEATIEHICRLEGGGAILVFLTGWDEISKLLEKINMNNFLGDSSKFLVLPLHGSMPTVNQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKVACLLPSWISKASAHQRRGRAGRVQAGVCYRLYPKVIYDAFPQYQLPEIIRTPLQELCLHIKSLQVGSIGSFLAKALQPPDALAVENAIELLKTIGALNDVEELTPLGRHLCTLPVDPNIGKMLLIGAIFQCVNPALTIAAALAYRSPFVLPLNRKEEADEAKRYFAGDSCSDHIALLKAYEGYRDAKRGGNEKDFCWQNFLSPVTLRMMEDMRNQFLDLLSDIGFVDKSKPNAYNQYSYDMEMISAVLCAGLYPNVVQCKRRGKRTAFYTKELGKVDIHPGSVNARVNLFSLPYLVYSEKVKTTSVYIRDSTNISDYALLMFGGNLIPSKTGEGIEMLGGYLHFSASKNILELIQRLRGEVDKLLNKKIEDPSLDITVEGKGVVSAVVELLRSQKH", "sequence_length": 995, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b945a04a64a68ad6eccc9de64af0eec14c135ecd4fb13f4ab4c3126403d0545d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4ILR7.json", "taxon_id": "3702", "uniprot_accession": "F4ILR7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dexh1-3-5-n-pf27261.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27261", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dexh1-3-5-n-pf27261.yaml" } ], "pfam_ids": [ "PF00035", "PF00270", "PF00271", "PF04408", "PF07717", "PF21010", "PF26026", "PF27261" ], "protein_name": "DExH-box ATP-dependent RNA helicase DExH5, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTNRLPPSLYVPPHQRLGSDYGFNPVPLSPVRYVSAYDDRVSEDRQPQEGTFHCADLDDWNKRFSMLLKDSLKQEVISREKKDRRDFDKLAALATTLGLYSHAYAKVVVFSKIPLPNYRFDLDDKKPQREVNLHTDLLQRVEAYLTEYLSKSSNRIDRVPANSVSRTSSISSTDEWFSEQPLPISATKILWQRSLQLRDRQQYWQASVEGQRMLDSRTSLPAFKQRHSVLTAISQNQVIVISGETGCGKTTQIPQFILESEIEANRGAFSSIICTQPRRISAMSVSERVAYERGEQLGESVGYKVRLEGVKGRDTRLLFCTTGILLRRLLVDRNLRGVTHVIVDEIHERGMNEDFLLIILKDLLSRRSELKLILMSATLDAELFSSYFGGAGVIYIPGFTYPVRSHFLEDILEMTRYRLTPYNQIDDYGQERTWKMNKQIPKKRKSQITFVVEDALRAADFKEFSPETRESLSCWYPDCIGFNLIEFLLCNICENEGPGGILIFLTGWDDISSLKEKLQIHPIFGNPDLVMLLACHGSMETFEQRLIFEEPASGVRKIVLATNIAETSITINDVAFVIDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVRPGQCYHLYPKCVYDAFAEYQLPEILRTPLHSLCLQIKSLNLGSISEFLSRALQSPELLAVQKAIAFLKIIGALDENEDLTTLGRYLSKLPMEPKLGKMLILGAILGCLDPILTVAAGLSVRDPFLTPQDKKDLAEAAKSQFSRDHSDHLALVRAYEGWKKAEEESAVYDYCWKNFLSIQSLRAIDSLRKEFFSLLKDTGLIDGNPSICNSEGNDANLTRAVICYGMYPGICSVVHNERSFSLKTMEDGQVLLYSNSENARETKIPYPWLVFNEKIKVNSVFLRDSTACSDSTLILFGGSISKGDTDGHLKMLGGYLEFFMKPDVAEIYQTLKKELDELIQNKLLNPKVDMQAHRELLSAIRLLVSEDGCDGRFVFGHQILRPLEISALSTKPSLFSRTESGPGGDNSKSQLQTILTRAGYTVPMYKTKQLKNNKFQTTVEFNETQIMGQPCSNKKSAEKDAAAEAIQWLKGGAKESHEQVNHMSKLLKKGKKDHL", "sequence_length": 1113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95bcd12a0d940959b36eb5a1319e5cfc450413580cfadc192f06192052617e28", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4IM84.json", "taxon_id": "3702", "uniprot_accession": "F4IM84", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ob-ntp-bind-pf07717.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ob-ntp-bind-pf07717.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:F4K2E9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00270", "PF00271", "PF04408", "PF07717", "PF21010" ], "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1dfaf64b95438ce07cfeea5ef6048aedab001f449df324070404728bb2a7b246", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGVDPFKTTETLEADKETNGGVPVKDKLTFKAPERKSRLGLDARAIEKKDNAKTEGEFKVPKKSAISVTSSLDEEDKSDVSGLDFGTENTRPVHSSRRYREKSSRSQSAQESTVTTENAGTSDISITPRTLSCTSSYERGGSNRHREEHRRDRSETPRSRQRNTYDEMDHYRRRESYRQSDRDYHGEKRRRYNSDWRTPGRSDWDDGQDEWERSPHGDRGSSYSRRPQPSPSPMLAAASPDARLASPWLDTPRSTMSSASPWDMGAPSPIPIRASGSSIRSSSSRYGGRSNQLAYSREGDLTNEGHSDEDRSQGAEEFKHEITETMRVEMEYQSDRAWYDTDEGNSLFDADSASFFLGDDASLQKKETELAKRLVRRDGSKMSLAQSKKYSQLNADNAQWEDRQLLRSGAVRGTEVQTEFDSEEERKAILLVHDTKPPFLDGRVVYTKQAEPVMPVKDPTSDMAIISRKGSGLVKEIREKQSANKSRQRFWELAGSNLGNILGIEKSAEQIDADTAVVGDDGEVDFKGEAKFAQHMKKGEAVSEFAMSKTMAEQRQYLPIFSVRDELLQVIRENQVIVVVGETGSGKTTQLTQYLHEDGYTINGIVGCTQPRRVAAMSVAKRVSEEMETELGDKIGYAIRFEDVTGPNTVIKYMTDGVLLRETLKDSDLDKYRVVVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSNFFGSVPIFNIPGRTFPVNILYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFSLKERMEQLVSSSSREITNLLILPIYSQLPADLQAKIFQKPEDGARKCIVATNIAETSLTVDGIYYVIDTGYGKMKVFNPRMGMDALQVFPISRAASDQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLMGERLDCIDEVLTIVSMLSVPSVFFRPKERAEESDAAREKFFVPESDHLTLLNVYQQWKEHDYRGDWCNDHYLQVKGLRKAREVRSQLLDILKQLKIELRSCGPDWDIVRKAICSAYFHNSARLKGVGEYVNCRTGMPCHLHPSSALYGLGYTPDYVVYHELILTTKEYMQCATSVEPHWLAELGPMFFSVKDSDTSMLEHKKKQKEEKSGMEEEMEKLRRDQVESELRSKERERKKRAKQQQQISGPGLKKGTTFLRPKKLGL", "sequence_length": 1255, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "1dfaf64b95438ce07cfeea5ef6048aedab001f449df324070404728bb2a7b246", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4K2E9.json", "taxon_id": "3702", "uniprot_accession": "F4K2E9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kh-deah11-1st-pf24638.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24638", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kh-deah11-1st-pf24638.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kh-deah11-2nd-pf24641.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24641", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kh-deah11-2nd-pf24641.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kh-deah11-pf24471.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24471", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kh-deah11-pf24471.yaml" } ], "pfam_ids": [ "PF00097", "PF00270", "PF00271", "PF01485", "PF07717", "PF22191", "PF24471", "PF24475", "PF24637", "PF24638", "PF24641" ], "protein_name": "ATP-dependent RNA helicase DEAH12, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNSFPPSDGGRSATDRRQQSSHSSSTNRYNSRSAQSSPPLNHRPTWNQQHSQYPNSNFPPNYRRDRNPSSGYSPPVTRARPNFIVQLLHPAAANSDTKLCFSTKKQEIESLALLCEIPEESIHVPQFGCIAGSFSFRQWVDARSAVVALWDYRLQGKHEFVPELIPNVIVPSDMNELKDRLRDLFSSHILSLMENGEGVKKVRLEIEEKSRQVVSFSSKRGLKFEVFEKKKAIEAERDLVVNRLEEFNNAMKSILRYLIGQDGYEFDLDDEEEGDVAVFCLEGAYDWRRIHCLIRRECRRLEDGLPIYAYRRQILKKIHREQIMVLIGETGSGKSTQLVQFLADSGVAASESIVCTQPRKIAAMTLADRVREESSGCYEENTVSCTPTFSSTEEISSKVVYMTDNCLLQHYMKDRSLSGISCVIIDEAHERSLNTDLLLALLKKLLSRRIDLRLVIMSATADAKQLSQYFFSCGILLVNGRNFPVEIVYSPSDTEENSVVGGIASYVGDVVKMAVEIHKTEKEGTILAFLTSQAEVEWACERFITPSAIALPLHGKLSFEEQFRVFQNHPGRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCRVSQSSARQRAGRAGRTEPGRCYRLYSKNDFDSMNLNQEPEIRRVHLGVALLRMLALGVNNIAEFNFVDAPVPEAIAMAVQNLVQLGAVVEKNGVHELTQEGHCLVKLGLEPKLGKLILGCFRHRMGKEGIVLAAVMANASSIFCRVGNFDDKMKADRLKVQFCNQNGDLFTLLSVYKEWASLPRERRNKWCWENSLNAKSMRRCEDTVKELEICIERELTLVSPSYWVWNPNEGTKHDKHLKMVILASLAENVAMYTGYNQLGYEVALTGQQVQLHPSCSLLAFGQKPSWVVFGELLSIVDQYLVCVTACDFEALYMLDPPPPFDVSQMDERRLRIKKVVGCSSTVLKRFCGKSNRSLLSIVSRARSLCSDERIGIQVDVDQNEIRLYAPPLDMEKVSALVNDALECEKKWMHNECLEKYLYHGRGQVPIALFGSGAQIKHLEVDQRFLTVDVLYYGDDVVDDRELLTFLEKKIDGSICSIYKFAANKQDCDEKEKWGRITFLTPESAMKATEIQKFYFKGSVLKLFPSLSTGGGIFKMPYFSSVTAKIRWPRRESSGRGCLKCPSGDIHRILGDISSLEIGTNYVHIQRDQQSNDSILISGLGDLSEAEVLDVLEFRTQRRDLNFFIFRKKYSVQCPSPTACEEELHKRIFARMSAKNPEPNCVQVQVFEPKEDNYFMRALIKFDGRLHFEAAKALQELNGEVLPGCLPWQKIKCEQLFQSSIICSASIYNTVKRQLNVLLARFERQKGGECCLEPTHNGAYRVKITAYATRPVAEMRRELEELLRGRPINHPGFTRRVLQHLMSRDGINLMRKIQQETETYILLDRHNLTVRICGTSEKIAKAEQELIQALMDYHESKQLEIHLRGPEIRPDLMKEVVKRFGPELQGIKEKVHGVDLKLNTRYHVIQVHGSKEMRQEVQKMVNELAREKSALGEKPDEIEVECPICLSEVDDGYSLEGCSHLFCKACLLEQFEASMRNFDAFPILCSHIDCGAPIVLADMRALLSQEKLDELFSASLSSFVTSSDGKFRFCSTPDCPSVYRVAGPQESGEPFICGACHSEICTRCHLEYHPLITCERYKKFKENPDLSLKDWAKGKNVKECPICKSTIEKTDGCNHMKCRCGKHICWTCLDVFTQEEPCYAHLRTIHGGIGLVE", "sequence_length": 1775, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "569726559544010db1aeb1a86f6c9265dbe8fefbf8dc00fe5f240fe48ec512f2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4KGU4.json", "taxon_id": "3702", "uniprot_accession": "F4KGU4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dead-pf00270.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00270", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dead-pf00270.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/helicase-c-pf00271.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00271", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/helicase-c-pf00271.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/deah-atp-helicase.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00690", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/deah-atp-helicase.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O43143", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00270", "PF00271", "PF04408", "PF07717", "PF21010" ], "protein_name": "ATP-dependent RNA helicase DHX15", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f8a6f7881e7155276cd2d65a00e3b1f77f9512bc711bf5648aad76b4d2adbf28", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSKRHRLDLGEDYPSGKKRAGTDGKDRDRDRDREDRSKDRDRERDRGDREREREKEKEKELRASTNAMLISAGLPPLKASHSAHSTHSAHSTHSTHSAHSTHAGHAGHTSLPQCINPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEYSQY", "sequence_length": 795, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f8a6f7881e7155276cd2d65a00e3b1f77f9512bc711bf5648aad76b4d2adbf28", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O43143.json", "taxon_id": "9606", "uniprot_accession": "O43143", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dhx37-c-pf23362.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23362", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dhx37-c-pf23362.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF07717", "PF21010", "PF23362" ], "protein_name": "Probable ATP-dependent RNA helicase kurz", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKKVHNAKARQNPQTIVDNSAVKKIQIDVDAVAGGNQVGYDEANALVLPSEKRATKIKVDKVQHVKILSKKQRKHLQAIVDKKKKKEGRAQLLGDLAAVQIPEEELQQYTSISQVQTVGLKRLPTLDEYLAKKKERQAQVLAEKSSASGLRVNAIKGSKRKLLVEEEEELQAKRKNPNVISVEEDDEDSSSSDEDDEEAPAQSAPIAIPTPVSIAPPQIAVKPPIKKLKPEPNPPACIHQTVYVPVHRTTEVQNARLRLPILAEEQQVMETINENPIVIVAGETGSGKTTQLPQFLYEAGYAQHKMIGVTEPRRVAAIAMSKRVAHEMNLPESEVSYLIRFEGNVTPATRIKFMTDGVLLKEIETDFLLSKYSVIILDEAHERSVYTDILVGLLSRIVPLRHKRGQPLKLIIMSATLRVSDFTENTRLFKIPPPLLKVEARQFPVTIHFQKRTPDDYVAEAYRKTLKIHNKLPEGGILIFVTGQQEVNQLVRKLRRTFPYHHAPTKDVAKNGKVSEEEKEETIDDAASTVEDPKELEFDMKRVIRNIRKSKKKFLAQMALPKINLDDYKLPGDDTEADMHEQPDEDDEQEGLEEDNDDELGLEDESGMGSGQRQPLWVLPLYSLLSSEKQNRIFLPVPDGCRLCVVSTNVAETSLTIPHIKYVVDCGRQKTRLYDKLTGVSAFVVTYTSKASADQRAGRAGRISAGHCYRLYSSAVYNDCFEDFSQPDIQKKPVEDLMLQMRCMGIDRVVHFPFPSPPDQVQLQAAERRLIVLGALEVAKTENTDLPPAVTRLGHVISRFPVAPRFGKMLALSHQQNLLPYTVCLVAALSVQEVLIETGVQRDEDVAPGANRFHRKRQSWAASGNYQLLGDPMVLLRAVGAAEYAGSQGRLPEFCAANGLRQKAMSEVRKLRVQLTNEINLNVSDVELGVDPELKPPTDAQARFLRQILLAGMGDRVARKVPLADIADKEERRRLKYAYNCADMEEPAFLHVSSVLRQKAPEWVIYQEAYELQNGDSTKMFIRGITAIEPEWLLLYVPLLCNIREVREDPAPRFDKTSGKIFCHVDATFGKSGWELPLGEVEMPLSEKACCYFGMFLLDGEVCSRLADFRSKLKSTPASVIKSWSSMNNKVLRFKRALITKQIHNRQALIDQWNSDPHFLLEEYQNLLYDVALSELTPLWPPVDKKEPQRQ", "sequence_length": 1192, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b117efaa9d20c80d329f2d2c1459fd4acfcbe8fc6e59208cbafe0f9cd65a0777", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O46072.json", "taxon_id": "7227", "uniprot_accession": "O46072", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ha2-c-pf21010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ha2-c-pf21010.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF04408", "PF07717", "PF21010" ], "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATPAGLERWVQDELHSVLGLSERHVAQFLIGTAQRCTSAEEFVQRLRDTDTLDLSGPARDFALRLWNKVPRKAVVEKPARAAEREARALLEKNRSYRLLEDSEESSEETVSRAGSSLQKKRKKRKHLRKKREEEEEEEASEKGKKKTGGSKQQTEKPESEDEWERTERERLQDLEERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLAKREREKLEDLEAELADEEFLFGDVELSRHERQELKYKRRVRDLAREYRAAGEQEKLEATNRYHMPKETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGDEEPSAPPTSTQAQQKESIQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTREELG", "sequence_length": 1041, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d756275f06142b0460aead0c9f930b15498a4158a938f3cfba2f9a9584a10ceb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O60231.json", "taxon_id": "9606", "uniprot_accession": "O60231", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ob-ntp-bind-pf07717.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ob-ntp-bind-pf07717.yaml" } ], "pfam_ids": [ "PF00035", "PF00270", "PF00271", "PF04408", "PF07717", "PF21010" ], "protein_name": "ATP-dependent RNA helicase A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINEVKSEEVPAVGIVPPPPILSDTSDSTASAAEGLPAPMGGPLPPHLALKAEENNSGVESSGYGSPGPTWDRGANLKDYYSRKEEQEVQATLESEEVDLNAGLHGNWTLENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGVIEAYSGLTKKKEGERVEPYKVFLSPDLELQLQNVVQELDLEIVPPPVDPSMPVILNIGKLAHFEPSQRQNAVGVVPWSPPQSNWNPWTSSNIDEGPLAYASTEQISMDLKNELTYQMEQDHNLQSVLQERELLPVKKFEAEILEAISSNSVVIIRGATGCGKTTQVPQYILDDFIQNDRAAECNIVVTQPRRISAVAVAERVAYERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVLAYPEVRIVLMSATIDTTMFCEYFFNCPIIEVYGRTFPVQEYFLEDCIQMTQFIPPPKDKKKKDKEDDGGEDDDANCNLICGDEYGPETKLSMSQLNEKETPFELIEALLKYIETLNVPGAVLVFLPGWNLIYTMQKHLENNSHFGSHRYQILPLHSQIPREEQRKVFDPVPDGVTKVILSTNIAETSITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFDRLETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAIIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAVCTISAATCFPEPFISEGKRLGYIHRNFAGNRFSDHVALLSVFQAWDDARMSGEEAEIRFCEQKRLNMATLRMTWEAKVQLKEILINSGFPEDCLLTQVFTNTGPDNNLDVVISLLAFGVYPNVCYHKEKRKILTTEGRNALIHKSSVNCPFSSQDMKYPSPFFVFGEKIRTRAISAKGMTLVTPLQLLLFASKKVQSDGQIVFIDDWIRLQISHEAAACITIRAAMEALVVEVSKQPNIISQLDPVNEHMLNTIRQISRPSAAGINLMIGSVRYGDGPRPPKMARYDNGSGYRRGYGGGGYGGGGYGGGYGSGGFGGGFGSGGGFGGGFNSGGGGFGSGGGGFGSGGGGFGGGGGGFSGGGGGGFGGGRGGGGGGFGGSGGFGNGGGGYGVGGGGYGGGGGGGYGGGSGGYGGGGYGGGEGYSISPNSYRGNYGGGGGGYRGGSQGGYRNNFGGDYRGSSGDYRGSGGGYRGSGGFQRRGYGGGYFGQGRGGGGGGGY", "sequence_length": 1380, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9fce454d546ac549a7bd69d23b16177539c637dfe3caafc20a204b39beb84847", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O70133.json", "taxon_id": "10090", "uniprot_accession": "O70133", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kh-deah11-1st-pf24638.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24638", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kh-deah11-1st-pf24638.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kh-deah11-2nd-pf24641.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24641", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kh-deah11-2nd-pf24641.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kh-deah11-pf24471.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24471", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kh-deah11-pf24471.yaml" } ], "pfam_ids": [ "PF00097", "PF00270", "PF00271", "PF01485", "PF07717", "PF24471", "PF24475", "PF24637", "PF24638", "PF24641" ], "protein_name": "ATP-dependent RNA helicase DEAH11, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNSFPPSDGGRSTTDRRQQSFPSSSTNRYNSRSAQSSPPLNHCTTWNQQHSQYHNTNFPPNYRRDRAPSSGFSPPVTRARPNFIVQLLHPAAANSDTKLSKKQEIESIALLCEIPEESVHVPQFGCIAASFSFRQWVDARSAVVALWDYRLQGRHDFVPELIPNVVVPSDMDELKDRLRDLFSSHVLSLMENGQGVKKVRMEIDDKSRQVASFSSKRGLKFEVFEKKKALEAERDLVVNRLDEFNNAMKSILRYLIGQDGYEFDVDDEDDEDVAVFSLEGAYDWRRIHYLILRECRRLEDGLPIYAYRRQILKKIHCEQIMVLIGETGSGKSTQLVQFLADSGVAASESIVCTQPRKIAAMTLTDRVREESSGCYEENTVSCTPTFSSTEEISSKVVYMTDNCLLQHYMKDRSLSGISCVIIDEAHERSLNTDLLLALLRKLLSRRIDLRLVIMSATADANQLSQYLFDCGILHVNGRNFPVEIVYSPSGTEENSVVGRIASYAGDVVKMAVEIHKTEKEGTILAFLTSQAEVEWACERFVAPSAIALPLHGKLSFEEQFMVFQNYPGRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCQVSQSSARQRAGRAGRTEPGRCYRLYSKTDFDSMNLNQEPEIRRVHLGVALLRMLALGIDNIAAFEFVDAPVPEAIAMAIQNLVQLGAVVEKNGVLELTQEGHCLVKLGLEPKLGKLILGCFRHRMGKEGIVLAAVMANASSIFCRVGNFDDKMKADRLKVQFCNDNGDLFTLLSVYKEWASLPRDRRNKWCWENSLNAKSMRRCEDTVKELEICIERELTLVSPSYWVWNPNEGTKHDKYLKMVILASLAENVAMYTGYDQLGYEVALTSQQVQLHPSCSLLAFGQKPSWVVFGELLSIVDQYLVCVTAFDFEALYMLDPPPPFDASQMDERRLRVKKVVGCSSTVLKRFCGKSNRSLLSIVSRARSLCSDERIGIQVDVDQNEIRLYASPLDMEKVSALVNDALECEKKWMRNECLEKYLFHGRGQIPIALFGSGAQIKHLEVDQRFLTVDVHYYGDDVVDDRELLTFLEKKIDGCICSIYKFAANKQDCDEKEKWGRITFLTPESAMKATEIQKFDFKGSVLKVFPSLSTGGGIFKMPYFSSVTAKIRWPRKESSGRGCLKCPSGDIHSILGDITSLEIGTNYVHIQRDQLSNDSILISGLGDLSEAEVLDVLEFRTQRRDLNFFIFRKKYSVQCPSPTACEEELHKRIFARMSAKNPEPNCVQVQVFEPKEDNYFMRALIKFDGRLHLEAAKALQELNGEVLPGCLPWQKIKCEQLFQSSIICSASIYNTVKRQLNVLLARFERQKGGECCLEPTHNGAYRVKITAYATRPVAEMRRELEELLRGKPINHPGFTPRVVQHLMSRDGINLMRKIQQETETYILLDRHNLTVRICGTSEKIAKAEQELVQSLMDYHESKQLEIHLRGPEIRPDLMKEVVKRFGPELQGIKEKVHGVDLKLNTRYHVIQVHGSKEMRQEVQKMVNELAREKSALGEKPDEIELECPICLSEVDDGYSLEGCSHLFCKACLLEQFEASMRNFDAFPILCSHIDCGAPIVVADMRALLSQEKLDELISASLSAFVTSSDGKLRFCSTPDCPSIYRVAGPQESGEPFICGACHSETCTRCHLEYHPLITCERYKKFKENPDLSLKDWAKGKDVKECPICKSTIEKTDGCNHLQCRCGKHICWTCLDVFTQAEPCYAHLRTIHGGIGLVELGVPEHPVAQPVHRL", "sequence_length": 1787, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e44e3c46793e87f2624d6ba637aef55f829487c9deba50bea976875a31f249c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0CE10.json", "taxon_id": "3702", "uniprot_accession": "P0CE10", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ob-ntp-bind-pf07717.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ob-ntp-bind-pf07717.yaml" } ], "pfam_ids": [ "PF00035", "PF00270", "PF00271", "PF04408", "PF07717", "PF21010" ], "protein_name": "Dosage compensation regulator mle", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDIKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRDFVNYLVRVGKLNTNDVPADAGASGGGPRTGLEGAGMAGGSGQQKRVFDGQSGPQDLGEAYRPLNHDGGDGGNRYSVIDRIQEQRDMNEAEAFDVNAAIHGNWTIENAKERLNIYKQTNNIRDDYKYTPVGPEHARSFLAELSIYVPALNRTVTARESGSNKKSASKSCALSLVRQLFHLNVIEPFSGTLKKKKDEQLKPYPVKLSPNLINKIDEVIKGLDLPVVNPRNIKIELDGPPIPLIVNLSRIDSSQQDGEKRQESSVIPWAPPQANWNTWHACNIDEGELATTSIDDLSMDYERSLRDRRQNDNEYRQFLEFREKLPIAAMRSEILTAINDNPVVIIRGNTGCGKTTQIAQYILDDYICSGQGGYANIYVTQPRRISAISVAERVARERCEQLGDTVGYSVRFESVFPRPYGAILFCTVGVLLRKLEAGLRGVSHIIVDEIHERDVNSDFLLVILRDMVDTYPDLHVILMSATIDTTKFSKYFGICPVLEVPGRAFPVQQFFLEDIIQMTDFVPSAESRRKRKEVEDEEQLLSEDKDEAEINYNKVCEDKYSQKTRNAMAMLSESDVSFELLEALLMHIKSKNIPGAILVFLPGWNLIFALMKFLQNTNIFGDTSQYQILPCHSQIPRDEQRKVFEPVPEGVTKIILSTNIAETSITIDDIVFVIDICKARMKLFTSHNNLTSYATVWASKTNLEQRKGRAGRVRPGFCFTLCSRARFQALEDNLTPEMFRTPLHEMALTIKLLRLGSIHHFLSKALEPPPVDAVIEAEVLLREMRCLDANDELTPLGRLLARLPIEPRLGKMMVLGAVFGCADLMAIMASYSSTFSEVFSLDIGQRRLANHQKALSGTKCSDHVAMIVASQMWRREKQRGEHMEARFCDWKGLQMSTMNVIWDAKQQLLDLLQQAGFPEECMISHEVDERIDGDDPVLDVSLALLCLGLYPNICVHKEKRKVLTTESKAALLHKTSVNCSNLAVTFPYPFFVFGEKIRTRAVSCKQLSMVSPLQVILFGSRKIDLAANNIVRVDNWLNFDIEPELAAKIGALKPALEDLITVACDNPSDILRLEEPYAQLVKVVKDLCVKSAGDFGLQRESGILPHQSRQFSDGGGPPKRGRFETGRFTNSSFGRRGNGRTFGGGYGNNGGGYGNNGGGYGNIGGGYGNNAGGYGNNGGYGNNGGGYRNNGGGYGNNGGGYGNKRGGFGDSFESNRGSGGGFRNGDQGGRWGNF", "sequence_length": 1293, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3f2180f48c939f7b2dd043db20c7bd725d9570fc44d35f4296eb343ebd6155b6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P24785.json", "taxon_id": "7227", "uniprot_accession": "P24785", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dhx37-c-pf23362.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23362", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dhx37-c-pf23362.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF04408", "PF07717", "PF21010", "PF23362" ], "protein_name": "Putative ATP-dependent RNA helicase rha-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKRKTKEDNASEDYDANELMIVPGEKRKKLEKSGEKSATGGKKNRNFAKEKEVAKLTKQAKRKLAAVQSRKALKQTQEELFAGLAEFQLDPSKLCQLSSSTKLSKEPEKAPVFPEKLKVFSGKTKTEAKRTQQDYYPTDDESSSEEEEEEEEGDNDIEDAGNTVEVKIEPIDLDDVDEAIDGNPETNLDQIVVKREDDEESDNEDILALPTTTVINRKKVIVERSKEIQKSRAELPIFAEEMRIVEAINENLVTVVCGETGSGKTTQIPQFLYEAGYASEGELIGITEPRRVAAIAMAQRVGVELAKPDEVSYQIRYEGTRSETTNILFMTDGVLMKEMEQDVMLKKYSVILIDEAHERSMYSDVLIGMLSRIVPLRSKTARPLRLVIMSATLRLDDFTHKKLFPLLTPKVIKVDARQFPVSVHFEKRTPDDYIASAFRKTCRIHETLPPGAILVFVTGQHEVKQLITKLKKRYPVVYETDKNGEVLVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFEDVDDGLMDGDDMNERGAAEAFDDYEEFENGDGDLSDGKVENSIGAPPADCEPLYCLPLYSLLSMGKQRRVFDETPAGMRLCVISTNVAETSLTIPGVKYVIDGGFEKRRLYDSITGVSRFAVCRISQASGDQRAGRAGRISAGHAYRLYSSAVYQDFVKFADPEILSKPADQLVLHLKSMNIVKVVNFPFPSAPDEQMLESAEKRLCRLGALSESTKNGKTEARITKLGKTLAVFPLAPSYAKFIAMADQHNLMSHAILLISLLSVREPLIPVSSLRGDTPEETKELMKNVLKERRRWCSHTGARRLGDLKVLMHAASVAEQIKYNARECEKVGLRVKALVEARKLRQQLTNIVNASCKKEHAAALDSDLPPPTDQQAQLLRQMVVASFSDRLARRVDRSVGQEEVQKGAYETTLIKGHVFIDPCSVVFTEEPEFVIYQELVQVNEKKLMTSVCAVDKEWLSRLAESYCNYGEQDKNQEPIYDPVKDMVVKTVKVTFGPLNWELPNENRSVPHDIMMYRYFALFLLDGLVFEKLKEYTPKLLAPPSTMVKSWAKLQKRTEMLLNKLIEKEVTTRSSLKEQWLKNENWLLEEYLEWVPESVHQQISLMWPPLEDHEKTIKMGRNKKY", "sequence_length": 1148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6c3316ee2759663b6af4ef3fad4f387257a5291ae746c609928555194fa8c047", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P34305.json", "taxon_id": "6239", "uniprot_accession": "P34305", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3418-pf11898.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3418-pf11898.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P43329", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00270", "PF00271", "PF04408", "PF07717", "PF11898", "PF21010", "PF29298" ], "protein_name": "ATP-dependent RNA helicase HrpA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a94db898b0fab414fbf16ed576e7d728479962975b63fd93167e30f872012bb3", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVKPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEKVRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG", "sequence_length": 1300, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a94db898b0fab414fbf16ed576e7d728479962975b63fd93167e30f872012bb3", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P43329.json", "taxon_id": "83333", "uniprot_accession": "P43329", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3418-pf11898.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3418-pf11898.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF07717", "PF11898", "PF21010", "PF29298" ], "protein_name": "ATP-dependent RNA helicase HrpA homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNSSVKHTLTPLQQSLFSQLNDIMLVDQRRLSARIHGIGKIKSQEAQQAVAAEIQQQIEQARLRVEQRKSAVQNPIVFPESLPVSQRKVEIQKLISEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAARSVAARIAEELETELGGLVGYKVRFNDQISDNTQIKLMTDGILLAEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFSKHFNNAPIIEVSGRTYPVEVRYRPVVEEDDQDQLQGILNAVDELQAEGRGDILIFMNGEREIRDTAEALQKQNLKHTEILPLFARLSAQEQNKIFHPSGLNRIVLATNVAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDERHIQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSIQDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFLNYLRIREWQDIYHQIRLTVREMSLPINSEKAEYQQIHTALLSGLLSHIGLKEAEKQQYLGARNAHFAIFPNSVLFKKQPKWVMAAELVETSKLWGRMVAEIEPEWIEPLAEHLIKKSYSVPLWSKSRGAVIADEKVTLYGVPIVAVRPVNYGAIDPTVSREIFIQSALVEGGWNTKHKFFKENQRLVREVEELEHKSRRRDILVDDRTLFEFYDQRIGTEVVSQKHFDTWWKKAQQKDPELLNFEHSFLINDDAEQVSKLDFPNFWHQGNLKLKLTYQFEPGTDADGVTVHIPLPLLNQVEMTGFDWQIPGLREELVIALIKSLPKSYRRNFVPAPNYAQAFLSRAVPLEKPLLDTLIYELRRMTGVTVEAEHWNWEQIPSHLKMTFRVVDENGKKIAESMNLDELKFNLKDRVQESISAVADDGIEQSGLHIWSFADLPQCYEQKQRGFSVKAFPAIVDEKDAVGIKLFETEFEQSVAMQQGLRRLLLLNVPSPIKYLHEKLPNKAKLGLYFTPFGRVLDLIDDCIACAVDKLIADFGGFVWDEAGFEKLRDFVRENLNEVTVDIAQKVEQILTLTYQLNQRLKGKMDFTMAFALSDIKSQLAGLVYQGFVQKSGYDRLPDLQRYLQAVDKRIDKLAQDVNRDRAAMLRVEQVQQAYQQLLAKLPKSKPISDEVAEIRYMIEELRVSLFAQQLGTKYQISDKRIGNIISQY", "sequence_length": 1304, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "391f6fc8d9a7ce211fb75ade2c862bf2a14bd51357b430677db63935f31299fb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P45018.json", "taxon_id": "71421", "uniprot_accession": "P45018", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ob-ntp-bind-pf07717.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ob-ntp-bind-pf07717.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF04408", "PF07717", "PF21010" ], "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSKRRFSSEHPDPVETSIPEQAAEIAEELSKQHPLPSEEPLVHHDAGEFKGLQRHHTSAEEAQKLEDGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKK", "sequence_length": 767, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1192251706bc459f3dfa277f692a6834f061d009c21409ad9c7da68c2cde44f0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53131.json", "taxon_id": "559292", "uniprot_accession": "P53131", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsrm-pf00035.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00035", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsrm-pf00035.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ob-ntp-bind-pf07717.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ob-ntp-bind-pf07717.yaml" } ], "pfam_ids": [ "PF00035", "PF00270", "PF00271", "PF04408", "PF07717", "PF21010" ], "protein_name": "ATP-dependent RNA helicase A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNAARDFVNYLVRINEIKSEEVPAFGVASPPPLTDTPDTTANAEGDLPTTMGGPLPPHLALKAENNSEVGASGYGVPGPTWDRGANLKDYYSRKEEQEVQATLESEEVDLNAGLHGNWTLENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGVVEAYSGLTKKKEGETVEPYKVNLSQDLEHQLQNIIQELNLEILPPPEDPSVPVALNIGKLAQFEPSQRQNQVGVVPWSPPQSNWNPWTSSNIDEGPLAFATPEQISMDLKNELMYQLEQDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTYPVQEYFLEDCIQMTHFVPPPKDKKKKDKDDDGGEDDDANCNLICGDEYGPETRLSMSQLNEKETPFELIEALLKYIETLNVPGAVLVFLPGWNLIYTMQKHLEMNPHFGSHRYQILPLHSQIPREEQRKVFDPVPVGVTKVILSTNIAETSITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFERLETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAICTIAAATCFPEPFINEGKRLGYIHRNFAGNRFSDHVALLSVFQAWDDARMGGEEAEIRFCEHKRLNMATLRMTWEAKVQLKEILINSGFPEDCLLTQVFTNTGPDNNLDVVISLLAFGVYPNVCYHKEKRKILTTEGRNALIHKSSVNCPFSSQDMKYPSPFFVFGEKIRTRAISAKGMTLVTPLQLLLFASKKVQSDGQIVLVDDWIKLQISHEAAACITGLRAAMEALVVEVTKQPAIISQLDPVNERMLNMIRQISRPSAAGINLMIGSTRYGDGPRPPKMARYDNGSGYRRGGSSYSGGGYGGGYSSGGYGSGGYGGSANSFRAGYGAGVGGGYRGVSRGGFRGNSGGDYRGPSGGYRGSGGFQRGGGRGAYGTGYFGQGRGGGGY", "sequence_length": 1270, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d36987e04a95d968024a7706369867ebd27615c80cb234f38c45578660b1c55a", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q08211.json", "taxon_id": "9606", "uniprot_accession": "Q08211", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dead-pf00270.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00270", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dead-pf00270.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF04408", "PF07717", "PF21010", "PF24485" ], "protein_name": "Probable ATP-dependent RNA helicase DHX34", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPPRTREGRDRRDHHRAPSEEEALEKWDWNCPETRRLLEDAFFREEDYIRQGSEECQKFWTFFERLQRFQNLKTSRKEEKDPGQPKHSIPALADLPRTYDPRYRINLSVLGPATRGSQGLGRHLPAERVAEFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSYFSNAPVVQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDLLVFLSGMAEISAVLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQSSPECAAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMANLRRQFKELLEDHGLLAGAQAAQVGDSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLRLQEEQDGGSSDEDRAGPAPPGASDGVDIQDVKFKLRHDLAQLQAAASSAQDLSREQLALLKLVLGRGLYPQLAVPDAFNSSRKDSDQIFHTQAKQGAVLHPTCVFAGSPEVLHAQELEASNCDGSRDDKDKMSSKHQLLSFVSLLETNKPYLVNCVRIPALQSLLLFSRSLDTNGDCSRLVADGWLELQLADSESAIRLLAASLRLRARWESALDRQLAHQAQQQLEEEEEDTPVSPKEVATLSKELLQFTASKIPYSLRRLTGLEVQNMYVGPQTIPATPHLPGLFGSSTLSPHPTKGGYAVTDFLTYNCLTNDTDLYSDCLRTFWTCPHCGLHAPLTPLERIAHENTCPQAPQDGPPGAEEAALETLQKTSVLQRPYHCEACGKDFLFTPTEVLRHRKQHV", "sequence_length": 1143, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2ac85a3cac72c32d65c64fb8d8995f3804916d89eff6d1e118071328014ab88e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q14147.json", "taxon_id": "9606", "uniprot_accession": "Q14147", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ob-ntp-bind-pf07717.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ob-ntp-bind-pf07717.yaml" } ], "pfam_ids": [ "PF00035", "PF00270", "PF00271", "PF04408", "PF07717" ], "protein_name": "ATP-dependent RNA helicase A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRDVKEFLYAWLGKNKYGNPTYDTKSETRSGRQRFKCELRITGFGYTAFGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPTLTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAASETVDLKSEIHGGWTMENSKKALNEFLQKMRLPQVNYGTKIRESNTVKTMETTAQIFVPQINKNLVGKGTGSNKKVSEAACAMNIVRQMFHLNIMQSYSGPIKKSKVSTLPEIAISIPEDLSTRVTEYVRSCGLELPEINETSATPEAPTSLLTDVKLAQFPVSEICSASNISWAPPLQNWNPWRASNIDEEPLAFMSMEQISQRIMEKEDFKRGEALDKITAQRGELPVAQYRENIVQTVAENRVTLIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNFFSSIPDVGPTPVITMHGRTFPVQSFYLEDILHNLQHMPEEPDQKKRKKGGPPPPDDDEGDEEVDDKGRNMNILTDPSINESLKTAMSRISEKDIPFGVIEAILNDIASRGVDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFNHYPGKRKIIVSTNIAETSITIDDVVYVIDSCKAKERMYTSNNNMVHFATVWASKTNVIQRRGRAGRVRAGYAFHLCSKMRFEALDDHGTAEMLRIPLHQIALTIKLLRLGSVGEFLGKALQPPPYDMVVESEAVLQAMGALDRNLELTSLGKMLARMPIEPVIAKVLILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFSDHVAIVSVIQGYREAVQMGASAAEREFCERYSLSNPVLKMTDGARRQLIDVLRNQCSFPEDILFDISVNVNGPDRELNLMRSLLVMALYPNVAYYVGKRKVLTIEQSSALINKYSMLVPMNNRQEMDFPSPLLVFTEKVRTRCISCKQMSVISAIQLLVFGSRKVECVGEGLVRIDETITIRMNVSTAAALIGLRPCIEALLVKSCENPESLAGLNPSDAELRQLLRDISSEEFMSEAGPIKDSLLTDNALIQKGPAPNRLEYADWGPSNNNSSFQNQDFPPAAGGKVHPYRGNRRGNHPYAQNRPYAPPNSGMGYQNFNNSGYGASGDWNAGRGNYGNVGSGYRGAGGGGGYRGGRGGRGGGRGGGGRGWNASNW", "sequence_length": 1301, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "33d41a265be517c5c1df9b3a115795f06f5e713b9ec3fb721514dc7b44e02c65", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q22307.json", "taxon_id": "6239", "uniprot_accession": "Q22307", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsrm-2-pf24995.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24995", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsrm-2-pf24995.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF07717", "PF21010", "PF24995" ], "protein_name": "ATP-dependent RNA helicase DHX30", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFTLDSFRKDRTQHRQRQCKLPPPRLPPMCVNPAPGGTISRASRDLLKEFPQPKNLLNSVIGRALGISHAKDKLVYVHTNGPKKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGWGLLGPRNELFDAAKYRVLADRFGSPADSWWRPEPTMPPTSWRQLNPENIRPAGTGGLSRSLGREEEEDEEEELEEGTIDVTEFLSMTQQDSHNPLRDSRGGSFEMTDDDSAIRALTQFPLPKNLLAKVIQIATSSSTAKNLMQFHTVGTKTKLATLTLLWPCPMTFVAKGRRKAEAENKAAALACKKLKSLGLVDRNNEPLTHAMYNLASLRELGETQRRPCTIQVPEPILRKIEAFLSHYPVDSSWISPELRLQSDDILPLGKDSGPLSDPITGKPYMPLSEAEEVRLSQSLLELWRRRGPIWQEAPQLPVDPHRDTILSAIEQHPVVVISGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRISAVSVAQRVSHELGPSLRRNVGFQVRLESKPPARGGALLFCTVGILLRKLQSNPSLEGVSHVIVDEVHERDVNTDFLLILLKGLQRLNPALRLVLMSATGDNERFSRYFGGCPVIKVPGFMYPVKEHYLEDILAKLGKHQYPHRHRHHESEDECALDLDLVTDLVLHIDARGEPGGILCFLPGWQEIKGVQQRLQEALGMHESKYLILPVHSNIPMMDQKAIFQQPPLGVRKIVLATNIAETSITVNDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMVPFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTDPRLAKAIVLAAIFRCLHPLLVVVSCLTRDPFSSSLQNRAEVDKVKALLSHDSGSDHLAFVRAVAGWEEVLRWQDRTSRENYLEENLLYAPSLRFIHGLIKQFSENIYEAFLVGKPSDCTLPSAQCNEYSEEEELVKGVLMAGLYPNLIQVRQGKVTRQGKFKPNSVTYRTKSGNILLHKSTINREATRLRSRWLTYFMAVKSNGSVFVRDSSQVHPLAVLLLTDGDVHIRDDGRRATISLSDSDLLRLEGDSRTVRLLRELRRALGRMVERSLRSELAALPLSVQQEHGQLLALLAELLRGPCGSFDVRKTADD", "sequence_length": 1194, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ca0bc2d60118bf20d6fa9960b07c9363e96392e0f98b67e59375545e69c48e68", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5BJS0.json", "taxon_id": "10116", "uniprot_accession": "Q5BJS0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsrm-dhx29-pf24385.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24385", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsrm-dhx29-pf24385.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF04408", "PF07717", "PF21010", "PF24385", "PF24899", "PF26026" ], "protein_name": "ATP-dependent RNA helicase DHX29", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGGKNKKHKAPGAAAMRAAVSASRARSAEAGAVGEAQSKKPVARPAPAVPTGAREPRVKQGPKIYSFNSANDSGGSANLDKSILKVVINNKLEQRIIGVINEHKKQNSDRGAISGRLSAKKLQDLYMALQAFSFKTKDIEDAMTNTLLHGGDLHSALDWLCLNLSDDALPEGFSQEFEEQQPKSRPKFQSVQIQATLSPPQQTKTKRQEEDPKIKPKKEETTVEVNMKEWILRYAEQQDEEEKGEGSKGLEEEEKFDPNQRYLNLAARLLDAKEQAAAFKLEKNKQGQKEAQEKIRKFQREMETLEDHPIFNPAIKISHQQNEKKKPAPATEAESALNLNLFEKSAAATEEEKGKKKEPHDVRNFDYTARSWTGKSPKQFLIDWVRKNLPKSPNPSFEKVAVGRYWKCRVRVVRSEDDVLVVCPTILTEDGMQAQHLGATLALYRLVKGQSVHQLLPPTYRDVWLEWSDEEKKREELNKMETNKPRDLFIAKLLNKLKQQQQQQQQQRPESEKGGSEDPEESWENLVSDEDLAALSLEPTSAEDLAPVRSLFRRLQSTPKYQRLLKERQQLPVFKHRDSIVETLKRHRVVVVAGETGSGKSTQVPHFLLEDLLLDECGARKCNIVCTQPRRISAVSLATRVCEELGCESGPGGRNSLCGYQIRMESRASESTRLLYCTTGVLLRKLQEDGLLADVSHVIVDEVHERSVQSDFLLVILKEILQKRSDLHLILMSATVDSDKFSTYFTHCPILRISGRSYPVEVFHLEDIVEETGFVLEKDSEYCQKFLEEEEEITINVTSKAGGVKKYQEYIPVQSGASPELNPFYQKYSSRTQHAILYMNPHKINLDLILELLVYLDKSPQFRNIEGAVLIFLPGLAHIQQLYDLLSSDRRFYSERYQVIALHSVLSTQDQAAAFMFPPPGVRKIVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASALQRQGRAGRVRDGFCFRLYTRERFEGFLDYSVPEILRVPLEELCLHIMKCDLGSPEDFLSKALDPPQLQVISNAMNLLRKIGACEPNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLEPVATLAAVMTEKSPFITPIGRKDEADLAKSSLAVADSDHLTIYNAYLGWKKAQQEGGFRSEISYCQRNFLNRTSLLTLEDVKQELMKLVKAAGFSSSPSWEGRKGPQTLSFQDIALLKAVLAAGLYDSVGKIMCTKSVDVTEKLACMVETAQGKAQVHPSSVNRDLQTYGWLLYQEKVRYTRVYLRETTLITPFPVLLFGGDIEVQHRERLLSVDGWIYFQAPVKIAVIFKQLRVLIDSVLRKKLENPKMSLENDKILQIITELIKTENN", "sequence_length": 1365, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "42267a83317723db533d75d53c77ec26e56eff583dbad1d7d13b61afce5cc3b1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PGC1.json", "taxon_id": "10090", "uniprot_accession": "Q6PGC1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsrm-2-pf24995.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24995", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsrm-2-pf24995.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF07717", "PF21010", "PF24995" ], "protein_name": "ATP-dependent RNA helicase DHX30", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFSLDSFRKDRAQHRQRQCKLPPPRLPPMCVNPTPGGTISRASRDLLKEFPQPKNLLNSVIGRALGISHAKDKLVYVHTNGPKKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGWGLLGPRNELFDAAKYRVLADRFGSPADSWWRPEPTMPPTSWRQLNPESIRPGGPGGLSRSLGREEEEDEEEELEEGTIDVTDFLSMTQQDSHAPLRDSRGSSFEMTDDDSAIRALTQFPLPKNLLAKVIQIATSSSTAKNLMQFHTVGTKTKLSTLTLLWPCPMTFVAKGRRKAEAENKAAALACKKLKSLGLVDRNNEPLTHAMYNLASLRELGETQRRPCTIQVPEPILRKIETFLNHYPVESSWIAPELRLQSDDILPLGKDSGPLSDPITGKPYVPLLEAEEVRLSQSLLELWRRRGPVWQEAPQLPVDPHRDTILNAIEQHPVVVISGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRISAVSVAQRVSHELGPSLRRNVGFQVRLESKPPSRGGALLFCTVGILLRKLQSNPSLEGVSHVIVDEVHERDVNTDFLLILLKGLQRLNPALRLVLMSATGDNERFSRYFGGCPVIKVPGFMYPVKEHYLEDILAKLGKHQYLHRHRHHESEDECALDLDLVTDLVLHIDARGEPGGILCFLPGWQEIKGVQQRLQEALGMHESKYLILPVHSNIPMMDQKAIFQQPPVGVRKIVLATNIAETSITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMVPFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTDPRLAKAIVLAAIFRCLHPLLVVVSCLTRDPFSSSLQNRAEVDKVKALLSHDSGSDHLAFVRAVAGWEEVLRWQDRSSRENYLEENLLYAPSLRFIHGLIKQFSENIYEAFLVGKPSDCTLASAQCNEYSEEEELVKGVLMAGLYPNLIQVRQGKVTRQGKFKPNSVTYRTKSGNILLHKSTINREATRLRSRWLTYFMAVKSNGSVFVRDSSQVHPLAVLLLTDGDVHIRDDGRRATISLSDSDLLRLEGDSRTVRLLKELRRALGRMVERSLRSELAALPPSVQEEHGQLLALLAELLRGPCGSFDVRKTADD", "sequence_length": 1194, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2e710fd8bdeaaa1ae9c9639503800bd9ffbe85f13d1541945cac777d2a84a8c2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7L2E3.json", "taxon_id": "9606", "uniprot_accession": "Q7L2E3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/dexh-box-helicase-domain-of-deah-box-helicase-32-deah-box-helicase-32--cd17977.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd17977", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/dexh-box-helicase-domain-of-deah-box-helicase-32-deah-box-helicase-32--cd17977.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ha2-c-pf21010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ha2-c-pf21010.yaml" } ], "pfam_ids": [ "PF04408", "PF07717", "PF21010" ], "protein_name": "Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEEGLECPNSSSEKRYFPESLDSSDGDEEEVLACEDLELNPFDGLPYSSRYYKLLKEREDLPIWKEKYSFMENLLQNQIVIVSGDAKCGKSAQVPQWCAEYCLSIHYQHGGVICTQVHKQTVVQLALRVADEMDVNIGHEVGYVIPFENCCTNETILRYCTDDMLQREMMSNPFLGSYGVIILDDIHERSIATDVLLGLLKDVLLARPELKLIINSSPHLISKLNSYYGNVPVIEVKNKHPVEVVYLSEAQKDSFESILRLIFEIHHSGEKGDIVVFLACEQDIEKVCETVYQGSNLNPDLGELVVVPLYPKEKCSLFKPLDETEKRCQVYQRRVVLTTSSGEFLIWSNSVRFVIDVGVERRKVYNPRIRANSLVMQPISQSQAEIRKQILGSSSSGKFFCLYTEEFASKDMTPLKPAEMQEANLTSMVLFMKRIDIAGLGHCDFMNRPAPESLMQALEDLDYLAALDNDGNLSEFGIIMSEFPLDPQLSKSILASCEFDCVDEVLTIAAMVTAPNCFSHVPHGAEEAALTCWKTFLHPEGDHFTLISIYKAYQDTTLNSSSEYCVEKWCRDYFLNCSALRMADVIRAELLEIIKRIELPYAEPAFGSKENTLNIKKALLSGYFMQIARDVDGSGNYLMLTHKQVAQLHPLSGYSITKKMPEWVLFHKFSISENNYIRITSEISPELFMQLVPQYYFSNLPPSESKDILQQVVDHLSPVSTMNKEQQMCETCPETEQRCTLQ", "sequence_length": 743, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7e1543b81af18b5043ae3495d063621d32f4fdad5102392cbdf20eb672da8510", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7L7V1.json", "taxon_id": "9606", "uniprot_accession": "Q7L7V1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsrm-dhx29-pf24385.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24385", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsrm-dhx29-pf24385.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ha2-c-pf21010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ha2-c-pf21010.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF04408", "PF07717", "PF21010", "PF24385", "PF24899", "PF26026" ], "protein_name": "ATP-dependent RNA helicase DHX29", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGGKNKKHKAPAAAVVRAAVSASRAKSAEAGIAGEAQSKKPVSRPATAAAAAAGSREPRVKQGPKIYSFNSTNDSSGPANLDKSILKVVINNKLEQRIIGVINEHKKQNNDKGMISGRLTAKKLQDLYMALQAFSFKTKDIEDAMTNTLLYGGDLHSALDWLCLNLSDDALPEGFSQEFEEQQPKSRPKFQSPQIQATISPPLQPKTKTYEEDPKSKPKKEEKNMEVNMKEWILRYAEQQNEEEKNENSKSLEEEEKFDPNERYLHLAAKLLDAKEQAATFKLEKNKQGQKEAQEKIRKFQREMETLEDHPVFNPAMKISHQQNERKKPPVATEGESALNFNLFEKSAAATEEEKDKKKEPHDVRNFDYTARSWTGKSPKQFLIDWVRKNLPKSPNPSFEKVPVGRYWKCRVRVIKSEDDVLVVCPTILTEDGMQAQHLGATLALYRLVKGQSVHQLLPPTYRDVWLEWSDAEKKREELNKMETNKPRDLFIAKLLNKLKQQQQQQQQHSENKRENSEDPEESWENLVSDEDFSALSLESANVEDLEPVRNLFRKLQSTPKYQKLLKERQQLPVFKHRDSIVETLKRHRVVVVAGETGSGKSTQVPHFLLEDLLLNEWEASKCNIVCTQPRRISAVSLANRVCDELGCENGPGGRNSLCGYQIRMESRACESTRLLYCTTGVLLRKLQEDGLLSNVSHVIVDEVHERSVQSDFLLIILKEILQKRSDLHLILMSATVDSEKFSTYFTHCPILRISGRSYPVEVFHLEDIIEETGFVLEKDSEYCQKFLEEEEEVTINVTSKAGGIKKYQEYIPVQTGAHADLNPFYQKYSSRTQHAILYMNPHKINLDLILELLAYLDKSPQFRNIEGAVLIFLPGLAHIQQLYDLLSNDRRFYSERYKVIALHSILSTQDQAAAFTLPPPGVRKIVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASALQRQGRAGRVRDGFCFRMYTRERFEGFMDYSVPEILRVPLEELCLHIMKCNLGSPEDFLSKALDPPQLQVISNAMNLLRKIGACELNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDPVATLAAVMTEKSPFTTPIGRKDEADLAKSALAMADSDHLTIYNAYLGWKKARQEGGYRSEITYCRRNFLNRTSLLTLEDVKQELIKLVKAAGFSSSTTSTSWEGNRASQTLSFQEIALLKAVLVAGLYDNVGKIIYTKSVDVTEKLACIVETAQGKAQVHPSSVNRDLQTHGWLLYQEKIRYARVYLRETTLITPFPVLLFGGDIEVQHRERLLSIDGWIYFQAPVKIAVIFKQLRVLIDSVLRKKLENPKMSLENDKILQIITELIKTENN", "sequence_length": 1369, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9f5a9f72a0a9f4baa5e2c5dadcd5de28b9b7d94420f8fba2f36dffa95e4c7d1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Z478.json", "taxon_id": "9606", "uniprot_accession": "Q7Z478", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/dexh-box-helicase-domain-of-deah-box-helicase-32-deah-box-helicase-32--cd17977.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd17977", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/dexh-box-helicase-domain-of-deah-box-helicase-32-deah-box-helicase-32--cd17977.yaml" } ], "pfam_ids": [ "PF04408", "PF07717", "PF21010" ], "protein_name": "Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDEEELDHPNASPEKRYFPESLDSSDGDEEGVLACEDLELNPFDGLPYSSRYYKLLKEREELPIWKEKYSFMESLLQNQVVVVSGDSKCGKSSQVPQWCAEYCLSIHYQHGGVICTQAHKQTAVQLALRVADEMDVNIGHEVGYVIPFENCCTTETILRYCTDDMLQREMMSNPFLGSYGVIILDDVHERSLATDVLLGLLKDVLLARPELKLIVNCSPLLTSKLSSYYGDVPVIEVRNKHPVEVVYLSGAQKDSFESVIRLIFEIHRSGEKGDVVVFLACEQDIEKTYELVCQEGSNLNPDVGDLVVIPLYPKEKCSLFRPVDETEKRCQVYQRRVVLTTSCGESLIWSHTVKFVIDVGLERRQVYNPRIRANSLVLQPISQSQAEIRKQLLGSSPSGKLFCLYTEEFASKDMRPLKPAEMQEANLTSMVLFMKRVDIAGLGRCDFMNRPAPESLMQALEDLDYLAALDNDGNLSEFGIIMSEFPLDPQLSKSILASCEFDCVDEMLTIAAMVTAPSCFLHVPHGAEEAAVTCWKTFLHPEGDHFTLINVYNAYQDTVLNSANEHCVEMWCHDCFLSCSALRMADVIRAELLEIIKRIELPYAEPAFGSKENGLNIKKALLSGYFMQIARDVDGSGNYLMLTHKQVAQLHPLSSYSITKKMPEWVLFHQFSISENNYIRVASAVSPELFMQLVPQYYFSNLPPSESKDILQQAAGHLPTETVNKDQDVCDKCPDATEQRCTIQ", "sequence_length": 744, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b886f71fea9e23bcd1a56e7bf715050f113fe58927f387e2ed8ce74187556d67", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BZS9.json", "taxon_id": "10090", "uniprot_accession": "Q8BZS9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dhx37-c-pf23362.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23362", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dhx37-c-pf23362.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF04408", "PF07717", "PF21010", "PF23362" ], "protein_name": "Probable ATP-dependent RNA helicase DHX37", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKLRRRYNIKGRQQAGPGPSKGPPEPPPVQLELEDKDTLKGVDASNALVLPGKKKKKTKAPPLSKKEKKPLTKKEKKVLQKILEQKEKKSQRAEMLQKLSEVQASEAEMRLFYTTSKLGTGNRMYHTKEKADEVVAPGQEKISSLSGAHRKRRRWPSAEEEEEEEEESESELEEESELDEDPAAEPAEAGVGTTVAPLPPAPAPSSQPVPAGMTVPPPPAAAPPLPRALAKPAVFIPVNRSPEMQEERLKLPILSEEQVIMEAVAEHPIVIVCGETGSGKTTQVPQFLYEAGFSSEDSIIGVTEPRRVAAVAMSQRVAKEMNLSQRVVSYQIRYEGNVTEETRIKFMTDGVLLKEIQKDFLLLRYKVVIIDEAHERSVYTDILIGLLSRIVTLRAKRNLPLKLLIMSATLRVEDFTQNPRLFAKPPPVIKVESRQFPVTVHFNKRTPLEDYSGECFRKVCKIHRMLPAGGILVFLTGQAEVHALCRRLRKAFPPSRARPQEKDDDQKDSVEEMRKFKKSRARAKKARAEVLPQINLDHYSVLPAGEGDEDREAEVDEEEGALDSDLDLDLGDGGQDGGEQPDASLPLHVLPLYSLLAPEKQAQVFKPPPEGTRLCVVATNVAETSLTIPGIKYVVDCGKVKKRYYDRVTGVSSFRVTWVSQASADQRAGRAGRTEPGHCYRLYSSAVFGDFEQFPPPEITRRPVEDLILQMKALNVEKVINFPFPTPPSVEALLAAEELLIALGALQPPQKAERVKQLQENRLSCPITALGRTMATFPVAPRYAKMLALSRQHGCLPYAITIVASMTVRELFEELDRPAASDEELTRLKSKRARVAQMKRTWAGQGASLKLGDLMVLLGAVGACEYASCTPQFCEANGLRYKAMMEIRRLRGQLTTAVNAVCPEAELFVDPKMQPPTESQVTYLRQIVTAGLGDHLARRVQSEEMLEDKWRNAYKTPLLDDPVFIHPSSVLFKELPEFVVYQEIVETTKMYMKGVSSVEVQWIPALLPSYCQFDKPLEEPAPTYCPERGRVLCHRASVFYRVGWPLPAIEVDFPEGIDRYKHFARFLLEGQVFRKLASYRSCLLSSPGTMLKTWARLQPRTESLLRALVAEKADCHEALLAAWKKNPKYLLAEYCEWLPQAMHPDIEKAWPPTTVH", "sequence_length": 1157, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b3e914fc5188dc4f705f737bf58754d673f8f5a2a7ac79cfa7bb6ff32f2049a1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IY37.json", "taxon_id": "9606", "uniprot_accession": "Q8IY37", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ob-ntp-bind-pf07717.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ob-ntp-bind-pf07717.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF04408", "PF07717", "PF21010", "PF26026" ], "protein_name": "ATP-dependent DNA/RNA helicase DHX36", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSYDYHQSWSRDGGPRGSGQGSSGGGGGGSRGSGGGGGGRGGRGRHPAHLKGREIGLWYAKKQTQKNKEAERQERAVVHMDERREEQIVQLLNSVQAKTDKDSEAQISWFAPEDHGYGTEVSSEKKINSEKKLDNQEKKLLNQEKKTFRITDKSYIDRDSEYLLQENEPNLSLDQHLLEDLQRKKTDPRYIEMQRFRKKLPSYGMQKELVNLINNHQVTVISGETGCGKTTQVTQFILDNYIERGKGSACRIVCTQPRRISAISVAERVATERAESCGNGNSTGYQIRLQSRLPRKQGSILYCTTGIILQWLQSDSRLSSVSHIVLDEIHERNLQSDVLMTVIKDLLHFRSDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDIIEKIRYVPDQKEHRSQFKRGFMQGHVNRQEKEEKEAIYKERWPAYIKELRTRYSASTVDVLQMMDDDKVDLNLIAALIRYIVLEEEDGAILVFLPGWDNISTLHDLLMSQVMFKSDKFLIIPLHSLMPTVNQTQVFKKTPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMSAEWVSKANAKQRKGRAGRVQPGHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSNEAVVLSIKHLMELSALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELAKETRSDHLTVVNAFEGWEEAKRRGFRYEKDYCWEYFLSSNTLQMLHNMKGQFAEHLLGAGFVSSRSPKDPKANINSDNEKIIKAVICAGLYPKVAKIRLNLGKKRKMVKVHTKSDGLVSIHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDKDQEIIAVDEWIVFQSPERIAHLVKGLRKELDSLLQEKIESPHPVDWDDTKSRDCAVLSAILDLIKTQEKATPRNLPPRSQDGYYS", "sequence_length": 1001, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea822b77d8d18ca5feee52a6a7f154c847f6c23bc926bf541bd290a3782e6fee", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VHK9.json", "taxon_id": "10090", "uniprot_accession": "Q8VHK9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ob-ntp-bind-pf07717.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ob-ntp-bind-pf07717.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF04408", "PF07717", "PF21010", "PF26026" ], "protein_name": "ATP-dependent DNA/RNA helicase DHX36", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSYDYHQNWGRDGGPRSSGGGYGGGPAGGHGGNRGSGGGGGGGGGGRGGRGRHPGHLKGREIGMWYAKKQGQKNKEAERQERAVVHMDERREEQIVQLLNSVQAKNDKESEAQISWFAPEDHGYGTEVSTKNTPCSENKLDIQEKKLINQEKKMFRIRNRSYIDRDSEYLLQENEPDGTLDQKLLEDLQKKKNDLRYIEMQHFREKLPSYGMQKELVNLIDNHQVTVISGETGCGKTTQVTQFILDNYIERGKGSACRIVCTQPRRISAISVAERVAAERAESCGSGNSTGYQIRLQSRLPRKQGSILYCTTGIILQWLQSDPYLSSVSHIVLDEIHERNLQSDVLMTVVKDLLNFRSDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDVIEKIRYVPEQKEHRSQFKRGFMQGHVNRQEKEEKEAIYKERWPDYVRELRRRYSASTVDVIEMMEDDKVDLNLIVALIRYIVLEEEDGAILVFLPGWDNISTLHDLLMSQVMFKSDKFLIIPLHSLMPTVNQTQVFKRTPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMSAEWVSKANAKQRKGRAGRVQPGHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSNEAVLLSIRHLMELNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELAKDTRSDHLTVVNAFEGWEEARRRGFRYEKDYCWEYFLSSNTLQMLHNMKGQFAEHLLGAGFVSSRNPKDPESNINSDNEKIIKAVICAGLYPKVAKIRLNLGKKRKMVKVYTKTDGLVAVHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDNDQETIAVDEWIVFQSPARIAHLVKELRKELDILLQEKIESPHPVDWNDTKSRDCAVLSAIIDLIKTQEKATPRNFPPRFQDGYYS", "sequence_length": 1008, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a2a7b1b56a5a06b0b89d91f032352c7c916c73f6b561a5e753758b959110241d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H2U1.json", "taxon_id": "9606", "uniprot_accession": "Q9H2U1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cystoblast-division-go0007282.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0007282", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cystoblast-division-go0007282.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/male-germline-stem-cell-symmetric-division-go0098730.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0098730", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/male-germline-stem-cell-symmetric-division-go0098730.yaml" } ], "pfam_ids": [ "PF07717", "PF21010" ], "protein_name": "Protein benign gonial cell neoplasm", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNHIIQDKYIPQQLLYFLAGRRCCQQFPCTFRTSEHEAFANNARSLGLRSQVVHVNGNSCVKVYKQACRHYLEEPKTLVLSSGATLNMFTLLSRKSLMGKEDLELYADLVSMKANASDLPSLHLPLPAIRPPNLRFWTEAQLNFLTAFLGHSLSDEILQSLYASRVIVYNAALCWDKSVFLPLVILDDCRNKKSNVKIMCIERQAILATYNSQRTANFFGEQLGETVGIQLPYFSAVSSSTFIIYSTAQYFLRSLTSQQFRNISHLVVNDVHLHDPYTDILLSEIRMALSSHQNLRVVLLSQMGNPKKFTDFFGEGLQLNMIKQPEVAPRVSYLNELHSCIALAGIHKGPDIYKEIPEAFRANNPRNEQMDKCLQAYGELGTDAALRPFLYAVNYDLAPVNYRHSLTGKTAVHFASELNKANHLRLLLFMGADPYIVDLFQQNAISLAAMNGNHECIDVLNSYSLHGYVVKSAKPDFVDYDLIIDIMYLLRTKPEYSPGEYSPGNILIILPTYYHIVKLNYMILSHCLTGSLQECSIFLLYDNMRNDYLQALVNASDETVKVVLATDIIESLCLKVPFKYQIDTACRLNNVYDTTSCSGDDRFEWVAKDALLRRELILQPNKGDVQCFRLISKEAYEELSETSQPSLQTMQLDKICLAVKLLSPNTIISEYLGITISPPPLINVHHAVQFLKKIDVLDDAEDVTWLGCRLMDIPVSCQLGRMLIFGILLRCLDPILTIVSSLSTADPLGIPFTEDIDNLWDRFTIYIQNSIKKERTYLSDNQFSDHFIFVRLYKEWQNRMHNRTPPLYLKDEYEFMLNGLMEQLTSIRSEIVSSLRAANLIHSRGKLSMNNLNQMSCNWHMVKAALTGGMYPNIYAVDTRKSSLKSAFSGNVSMHPNTVLRDFLEPLNISAQSFRTPWIVCNRQKSHIVYATLVVPLAVAMFSGHPRIRLSPICDSEMSLTDRNVNVFIDEWIWMVMSKATAEMVMRTRYYFFKMYHDLLKHCSELDMWRRDCEPVSQYTVLTDTLSKIFESEDGFVGFFKPPPITFLPTPQLPSLYLLSVNAHFSWAREVEENMLSKPHHFNSHFIERQFFVLYAGGDCEEFHSRNTPAFIESVLGKFVRPIDTPNRHIFVILYRKDPDMMLSISRAKFVNGVFMLQEYFRNNIPVFEILDACVSLNVQTPVFDGRLMSALIDKRVGNLIMELFAFRHHWIHKR", "sequence_length": 1215, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9a0ebaad173d471683b3a7191e806c4bb65f6342f40693dcdbbdf0d863e218c9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9W1I2.json", "taxon_id": "7227", "uniprot_accession": "Q9W1I2", "uniprot_release": "2026_03" } ], "pfam_id": "PF07717", "short_name": "OB_NTP_bind", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/coatamer-beta-c-pf07718.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07718", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/coatamer-beta-c-pf07718.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/coatomer-b-cpla-pf14806.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14806", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/coatomer-b-cpla-pf14806.yaml" } ], "pfam_ids": [ "PF01602", "PF07718", "PF14806" ], "protein_name": "Coatomer subunit beta", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFENLIPDAPELIHDFLVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPSERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLIVLDRLVELKEHPAHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVLKKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDSNEAAAADVLEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEVRRSLGEIPIVESEIKKEAGELKPEEEITVGPVQKLVTEMGTYATQSALSSSRPTKKEEDRPPLRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSQMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAKNEMNCKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNVTDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQKKTSL", "sequence_length": 953, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "303e600aea6abe305a95e3ab44df540fe28ff47ff0ae3720aa98286f1089fd6f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P23514.json", "taxon_id": "10116", "uniprot_accession": "P23514", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coatomer-beta-subunit-appendage-platform-domain-ipr029446.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029446", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coatomer-beta-subunit-appendage-platform-domain-ipr029446.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coatomer-beta-subunit-c-terminal-ipr011710.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coatomer-beta-subunit-c-terminal-ipr011710.yaml" } ], "pfam_ids": [ "PF01602", "PF07718", "PF14806" ], "protein_name": "Coatomer subunit beta", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSLSSQPAYTLVFDPSPSMETYSSTDFQKALEKGSDEQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVPKLAEDGKLRHEMILVCNAIQHDLQHPNEYIRGNTLRFLTKLREAELLEQMVPSVLACLEYRHAYVRKYAILAVFSIFKVSEHLLPDAKEIINSFIVAETDPICKRNAFIGLAELDRENALHYLENNIADIENLDPLLQAVFVQFIRQDANRTPALKAQYIELLMELLSTTTSDEVIFETALALTVLSANPNVLVPAVNKLIDLAVKVSDNNIKLIVLDRIQDINANNVGALEELTLDILRVLNAEDLDVRSKALDISMDLATSRNAEDVVQLLKKELQTTVNNPDQDKAMQYRQLLIKTIRTVAVNFVEMAASVVSLLLDFIGDLNSVAASGIIAFIKEVIEKYPQLRANILENMVQTLDKVRSAKAYRGALWIMGEYAEGESEIQHCWKHIRNSVGEVPILQSEIKKLTQNQEHTEENEVDATAKPTGPVILPDGTYATESAFDVKTSQKSVTDEERDSRPPIRRFVLSGDFYTAAILANTIIKLVLKFENVSKNKTVINALKAEALLILVSIVRVGQSSLVEKKIDEDSLERVMTSISILLDEVNPEEKKEEVKLLEVAFLDTTKSSFKRQIEIAKKNKHKRALKDSCKNIEPIDTPISFRQFAGVDSTNVQKDSIEEDLQLAMKGDAIHATSSSSISKLKKIVPLCGFSDPVYAEACITNNQFDVVLDVLLVNQTKETLKNLHVQFATLGDLKIIDTPQKTNVIPHGFHKFTVTVKVSSADTGVIFGNIIYDGAHGEDARYVILNDVHVDIMDYIKPATADDEHFRTMWNAFEWENKISVKSQLPTLHAYLRELVKGTNMGILTPSESLGEDDCRFLSCNLYAKSSFGEDALANLCIEKDSKTNDVIGYVRIRSKGQGLALSLGDRVALIAKKTNKLALTHV", "sequence_length": 973, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0a04d6088e7ae102b652f12d3d1256e5a06793d7e05c06af8d29e3e63719c437", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P41810.json", "taxon_id": "559292", "uniprot_accession": "P41810", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coatomer-beta-subunit-appendage-platform-domain-ipr029446.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029446", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coatomer-beta-subunit-appendage-platform-domain-ipr029446.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coatomer-beta-subunit-c-terminal-ipr011710.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coatomer-beta-subunit-c-terminal-ipr011710.yaml" } ], "pfam_ids": [ "PF01602", "PF07718", "PF14806" ], "protein_name": "Coatomer subunit beta", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSQVPCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVLPVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILVCDAYRKDLQHPNEFLRGSTLRFLCKLKEPELLEPLMPAIRACLDHRHSYVRRNAVLAIFTIYKNFDWLVPDGPELIASFLDTQQDMSCKRNAFLMLLHADQERALNYLASCIDQVHTFGDILQLVIVELIYKVCHANPAERSRFIRCIYNLLNSSSNAVRYESAGTLITLSLAPTAIKAAASCYIELVVKESDNNVKLIVLDRLVAMKEHEGMEKVMQDLVMDVLRVLAAPDIEVRRKTLALALDLVYSRNIGEMVLVLKKEVAKTHNVEHEDTGKYRQLLVRTLHTCSIKFPDVAANVIPVLVEFLSDTNELAAADVLIFIREAIQKFPALRALIIEHLIEAFPQIKSSKIHRAAVWILGEYVEGSQILEVIAVIQQTLGEVPMVEAEQRRLAGDQTEEQKQQQGSAGGNAAGSAAEGSGSGNASNKVTSDGTYATQSAYSLAPVAKAEKRPPLRQYLMDGDFFIGAALSATLTKLALRYAELETEARAQNRLTTQVMLIMSSILHLGKSGFPSKPITNDDTDRIFVCLRTLSERTPEAISVFTLYCREALGKMLDAQHDEDQRMLKEKQKATAKVQPDDPVLFAQLSNGRDNQLGENVFESSLNQALAGSKNAQLSDVASPNSKLNKVTQLTGFSDPVYAEAYVNVNQYDIVLDVLIVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNIVYETALNTNVVVLNTIHIDIMDYIIPASCTDTEFRQMWQDFEWENKVTVNTSFTDLHEYLKHLLKSTNMKCLTPEKALSGQCGFMAANMYAKSIFGENALANLSIEKPVDDPDSKVTGHIRIRAKSQGMALSLGDKISSSQKQSVQAA", "sequence_length": 964, 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"UNIPROT_FETCH", "sequence_sha256": "3cde73e710d2e2558ffcf43744dbdada12131e50ab00e085f3341aad993cf17d", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P53618.json", "taxon_id": "9606", "uniprot_accession": "P53618", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coatomer-beta-subunit-appendage-platform-domain-ipr029446.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029446", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coatomer-beta-subunit-appendage-platform-domain-ipr029446.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/coatamer-beta-c-pf07718.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/coatomer-b-cpla-pf14806.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14806", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/coatomer-b-cpla-pf14806.yaml" } ], "pfam_ids": [ "PF01602", "PF07718", "PF14806" ], "protein_name": "Coatomer subunit beta", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDFLVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPSERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLIVLDRLVELKEHPAHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVLKKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDSNEAAAADVLEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEVRRSLGEIPIVESEIKKEAGELKPEEEITVGPVQKLVTEMGTYATQSALSSSRPTKKEEDRPPLRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSQMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAKNEMNCKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMTDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQKKTSL", "sequence_length": 953, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9dc6359aea362123599f17ee4300af8b73c66365499304d38046fdcbd4e0cc65", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JIF7.json", "taxon_id": "10090", "uniprot_accession": "Q9JIF7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coatomer-beta-subunit-appendage-platform-domain-ipr029446.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029446", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coatomer-beta-subunit-appendage-platform-domain-ipr029446.yaml" }, { 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"MDKSSTMLVHYDKGTPAVANEIKEALEGNDVEAKVDAMKKAIMLLLNGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRMKETEIVEPLTPSVLQNLEHRHPFVRRNAILAIMSIYKLPHGDQLFVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCAEERAVNYLLSNVDKVSDWNESLQMVVLELIRSVCKTKPAEKGKYIKIIISLLSATSSAVIYECAGTLVSLSSAPTAIRAAANTYCQLLLSQSDNNVKLILLDRLYELKTLHRDIMVELIIDVLRALSSPNLDIRRKTLDIALDLITHHNINEVVQMLKKEVVKTQSGELEKNGEYRQMLIQAIHACAVKFPEVASTVVHLLMDFLGDSNVASALDVVVFVREIIETNPKLRVSIITRLLDTFYQIRAGKVCPCALWIIGEYCLSLSEVESGISTITQCLGELPFYSVSEESEPTETSKKIQPTSSAMVSSRKPVILADGTYATQSAASETTFSSPTVVQGSLTSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKTEVNKTVSQALLIMVSILQLGQSPVSPHPIDNDSYERIMLCIKLLCHRNVEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTHAQPDDLIDFFHLKSRKGMSQLELEDQVQDDLKRATGEFTKDENDANKLNRILQLTGFSDPVYAEAYVTVHHYDIALEVTVINRTKETLQNLCLELATMGDLKLVERPQNYSLAPERSMQIKANIKVSSTETGVIFGNIVYETSNVMERNVVVLNDIHIDIMDYISPAVCSEVAFRTMWAEFEWENKVAVNTTIQNEREFLDHIIKSTNMKCLTAPSAIAGECGFLAANLYAKSVFGEDALVNLSIEKQTDGTLSGYIRIRSKTQGIALSLGDKITLKQKGGS", "sequence_length": 948, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cc0cfaf2b7ed18685710eefdd7f38dd89abb2e3a99b89cd2141c01cef059b657", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SV20.json", "taxon_id": "3702", "uniprot_accession": "Q9SV20", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coatomer-beta-subunit-appendage-platform-domain-ipr029446.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029446", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coatomer-beta-subunit-appendage-platform-domain-ipr029446.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coatomer-beta-subunit-c-terminal-ipr011710.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coatomer-beta-subunit-c-terminal-ipr011710.yaml" } ], "pfam_ids": [ "PF01602", "PF07718", "PF14806" ], "protein_name": "Coatomer subunit beta-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKSSTMLVHYDKGTPAVANEIKEALEGNDVEAKVDAMKKAIMLLLNGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRMKETEIVEPLTPSVLQNLEHRHPFVRRNAILAIMSIYKLPQGDQLFVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCAEERAVNYLLSNVDKVSDWNESLQMVVLELIRSVCKTKPAEKGKYIKIIISLLSATSSAVIYECAGTLVSLSSAPTAIRAAANTYCQLLLSQSDNNVKLILLDRLYELKTLHRDIMVELIIDVLRALSSPNLDIRRKTLDISLDLITHHNINEVVQMLKKEVVKTQSGELEKNGEYRQMLIQAIHACAVKFPEVASTVVHLLMDFLGDSNVASALDVVVFVREIIETNPKLRVSIITRLLDTFYQIRAGKVCPCALWIIGEYCLSLSEVESGISTITQCLGELPFYSVSEESEPTETSKKIQPTSSAMVSSRKPVILADGTYATQSAASETTFSSPTVVQGSLTSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKTEVNKTVTQALLIMVSMLQLGQSPVSPHPIDNDSYERIVLCIKLLCHRNDEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTHAQPDDLIDFFHLKSRKGMSQLELEDQVQDDLKRATGEFTKDENDANKLNRILQLTGFSDPVYAEAYVTVHHYDIALEVTVINRTKETLQNLCLELATMGDLKLVERPQNYSLAPERSMQIKANIKVSSTETGVIFGNIVYETSNVMERNVVVLNDIHIDIMDYISPAVCSEVAFRTMWAEFEWENKVAVNTTIQNEREFLDHIIKSTNMKCLTAPSAIEGECGFLAANLYAKSVFGEDALVNVSIEKQTDGALSGYIRIRSKTQGIALSLGDKITLKQKGSS", "sequence_length": 948, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6230b5ab5814fb4506c36b4e3c96a1ad26ea4ed633b2331892dd50c1f2ea1144", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SV21.json", "taxon_id": "3702", "uniprot_accession": "Q9SV21", "uniprot_release": "2026_03" } ], "pfam_id": "PF07718", "short_name": "Coatamer_beta_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 12, "discovery_scanned": true, "example_count": 12, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-type-1-ipr006527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-type-1-ipr006527.yaml" } ], "pfam_ids": [ "PF07734" ], "protein_name": "Probable F-box protein At1g67455", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMISDLPEDMVEEILSRVSIISLGALRWNDLSKARVICKAEARQQFAGFMIKGSKVCSMRFDLHGIQNNNVEVVEPSIKQIAKFNHVEISQVFHCDGLLLMMSKEVSNTRLVVWNPYLGKIWSIQHRSAYHSENRYTLGYDNNRKPQNLEVAYHSIKGITYLFNGGEKIGEGPTGCLLCFDFTRERFGPSLPLPFHVAHLYTEQLAVLLHNWGAFAMEIWVTTNIEPNAVLMEQLLKNYLLYTSDFIGSFFIDQEKKHAVIFDSSLSCGSVACIIGETGNLRTVDLGVAAVPYRQLPVCSYAPSLEQINQGQELPLIGLTQIFMEQHKYWVSTFLDNLITKYG", "sequence_length": 343, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "24d75bd4586a1be834698aab78185d6332e9b9b8d28793cc044dea615805766a", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O64800.json", "taxon_id": "3702", "uniprot_accession": "O64800", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-domain-ipr017451.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR017451", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-domain-ipr017451.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-type-1-ipr006527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-type-1-ipr006527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/f-box-family-protein-tigr01640.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/f-box-family-protein-tigr01640.yaml" } ], "pfam_ids": [ "PF07734" ], "protein_name": "F-box protein At1g10895", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTMSDLDEIMVAEILCRTPMTCLKTVRSVCKKWNALSKKWFFFGKAKQFLGFMMMDSRVCSLRFDLRKDLVVEPPSIKQVSILDQIEVSKIFHSDGLLLCIIKNDTTRLLVWNPYLEQTRWIQPRHNFHILDCYAIGHDKNRKHKILRFVDDFLPVENVVFGGNTYFFAKERYIFEGKGPEEIDITETEDFLLCFDFTAERFGPRLPLPFHSYYAETVTLSCVKEDQLSVLCQRQPSEPSEILEIWVSTNIQPNAVSWSIFLKVDMRPLTGFQFNDMAGSFFIDQENKVAVVFDLDPSQICRYQTAYIIGQEYGGYFNSVNIGEVPNLWIPGSVGYADTTSCIPPVCSSYVPSLVQIG", "sequence_length": 359, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f65e16706c832c341673fe970c46ffd15755f9de7e02a2e0f356dffb2b64b45", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0CB27.json", "taxon_id": "3702", "uniprot_accession": "P0CB27", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-type-1-ipr006527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-type-1-ipr006527.yaml" } ], "pfam_ids": [ "PF07734" ], "protein_name": "F-box/kelch-repeat protein At1g24800", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRRRCDLQPKRTRMCDLQPKRTSMCDLPPKLVGEKILTRIPITSLRAVRSTCKLWNALTKDRVLGKAAAQFLGFMTMDSKVCSVRFHLRRSKEEEEDTMDLSIKQVDLLNQVEISRVYHCDGLLLCVAKDNSRVVVWNPYLGQTRWIRPRTESNIGDSYALGYDINRNHKILRMVQTRNVSVYRYEIYDLRSNSWRVLEVTPNGEMDPNHPLYGVSVKGNTYFFAHEDSSSGEIDEDGDIIDLEDFLLCFDFTTETFGLRLPLPFHSTIDATVTLSCVRDQQLAVLYHNEGLHSDDRFTTVEFWVTTSIEPNSVSWSKFLTVDMRPLALTGVRFDNDMGATFFIDEDEKVAVVFDLDGYLSTESARYHTAFISGKDGFFKPVTLGVAPNVGEPCPRTGHIPTTYRPPLVCSSTYLPSLVQVNQQRKRKERHV", "sequence_length": 433, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8206ac3d98c5557871cb607fb365362e0680eeb715e42382f12d2a281afd22ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DI02.json", "taxon_id": "3702", "uniprot_accession": "P0DI02", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-type-1-ipr006527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-type-1-ipr006527.yaml" } ], "pfam_ids": [ "PF07734" ], "protein_name": "F-box/kelch-repeat protein At1g24881", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRRRCDLQPKRTRMCDLQPKRTSMCDLPPKLVGEKILTRIPITSLRAVRSTCKLWNALTKDRVLGKAAAQFLGFMTMDSKVCSVRFHLRRSKEEEEDTMDLSIKQVDLLNQVEISRVYHCDGLLLCVAKDNSRVVVWNPYLGQTRWIRPRTESNIGDSYALGYDINRNHKILRMVQTRNVSVYRYEIYDLRSNSWRVLEVTPNGEMDPNHPLYGVSVKGNTYFFAHEDSSSGEIDEDGDIIDLEDFLLCFDFTTETFGLRLPLPFHSTIDATVTLSCVRDQQLAVLYHNEGLHSDDRFTTVEFWVTTSIEPNSVSWSKFLTVDMRPLALTGVRFDNDMGATFFIDEDEKVAVVFDLDGYLSTESARYHTAFISGKDGFFKPVTLGVAPNVGEPCPRTGHIPTTYRPPLVCSSTYLPSLVQVNQQRKRKERHV", "sequence_length": 433, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8206ac3d98c5557871cb607fb365362e0680eeb715e42382f12d2a281afd22ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DI03.json", "taxon_id": "3702", "uniprot_accession": "P0DI03", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-arabidopsis-thaliana-f-box-wd-40-repeat-containi-cd22157.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22157", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-arabidopsis-thaliana-f-box-wd-40-repeat-containi-cd22157.yaml" } ], "pfam_ids": [ "PF00646", "PF07734" ], "protein_name": "F-box/kelch-repeat protein At2g43270", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIYVVPDLLEEIFLGLPLKSILRFKTVSKQWRSILESKSFAERRLNVEKKEKILAVGDRTELGFEGEEEIQMVYLHCDIDATRPSLTCEGLVCIPAPGWINVLNPSTRQLRRFPCSPNHHVPSDRIRFQFRDELYLTSFPGNWEMGFGRDKFNGSYKVVRMCFSPVEKCEVLDVETGEWSELNPPPNDIDVGRKSVCVNGSIYWLKNV", "sequence_length": 208, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7a49e97e0b77a8d46843d64b18b3f79117d8d6a49ea6522a2396f9482fa8fd8f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1PEU9.json", "taxon_id": "3702", "uniprot_accession": "Q1PEU9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-arabidopsis-thaliana-f-box-wd-40-repeat-containi-cd22157.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22157", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-arabidopsis-thaliana-f-box-wd-40-repeat-containi-cd22157.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/fba-1-pf07734.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07734", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/fba-1-pf07734.yaml" } ], "pfam_ids": [ "PF00646", "PF07734" ], "protein_name": "Protein SUPPRESSOR OF NIM1 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALPWELEEDILSRLPPISLVRFRTVSKHWNSLFNDKTFINNHLSRSRPEFIILTNSKIYSVDIIDHNNIDPTIRLHEIPTYDIHSRGTDLNRTIINTCDEFLFYNYRYWDNMTALWNPWLRQVRWIEYANQEFCVFGLGYDNSRPEKVYKILGHLFCHGKVLRDQKVVIYECASDSLRFIDRPEDDDWPITETAKRSNVSLNGNLYWFGCSNYENDEYYIRIFDFSTEDFKPFCLLPCQMSHSTDELVLAVYKGDRFSLLKQCSVTREIGVWVTKERISNDNGNGGEGVEWLKLMTLSKPNLPKLFGTVSYFIYGKTLYMCNGDDETALACIYIVREDVCKKFQIGSGNINCRHCVYTPNLLSLPLFIG", "sequence_length": 370, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b5a7bd4bc6d2cc4640e2aeb689cf99565e724e596bc0c41bea8eb79b93aebe17", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LL17.json", "taxon_id": "3702", "uniprot_accession": "Q8LL17", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-domain-ipr017451.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR017451", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-domain-ipr017451.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-type-1-ipr006527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-type-1-ipr006527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/f-box-family-protein-tigr01640.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/f-box-family-protein-tigr01640.yaml" } ], "pfam_ids": [ "PF07734" ], "protein_name": "Putative F-box protein At1g77650", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFLSLPSDVVEEFLFKTPIESLVLCKPTCKQLYALCNDKRFIYNHLDLSEERLMRIYLDKIKIINPVTLDILCLPVPAEFDSVTFNVIHCDGLLLCRWTTRGLDRYNKLAVWNPISGQLKFVESFFHGVTDLYGFGYANNGPRDSYKILRVSYWRKECEIYDLKSKLWRAFSATLDWVVNTPQQNVFMNGNMYWIADTLGDNIRETFIQSFDFSKETFKPICSFPYENKIIDTLIMNGIHRIADSVILSSFRVDRLSLFRQQRLEDKKYEMEVWVTNKVTDEVVSWTKYFNVTHHPDLPILNPYLFTYMRVPTFFIHETNSIMLWCDKAAGKGFACTSFYEIGDQGEVKHQLETRKRFRANGERNSCVSSCVYVPSLVPIPE", "sequence_length": 383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "56f7146e8e0f0907637d77979d99a283c2599603f6a90c5ec0e1723eb1edba9e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CAP3.json", "taxon_id": "3702", "uniprot_accession": "Q9CAP3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/simple-leaf-morphogenesis-go0060776.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0060776", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/simple-leaf-morphogenesis-go0060776.yaml" } ], "pfam_ids": [ "PF00646", "PF07734" ], "protein_name": "F-box only protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEELAMLRQLIGQLQELLHNGSPPPPSSSSSLSSSSPSFLVLHHPQYQNGWCLPCIEDTSADDCCDIVMAGGKRPGIFKMLETVKPPVKRTRKERTQGKSCTEVDEISGNMDQEIWQEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYTITHENVNSGQVYDPSLKKWHHPIIPALPKKSIVLPMASAGGLVCFLDIGHRNFYVSNPLTKSFRELPARSFKVWSRVAVGMTLNGNSTSHGYKVLWVGCEGEYEVYDSLSNVWTKRGTIPSNIKLPVLLNFKSQPVAIHSTLYFMLTDPEGILSYDMVSGKWKQFIIPGPPDLSDHTLAACGERLMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLEFYGKHIRMNCLGNKGCLILLSLRSRQMNRLITYNAVTREWTKVPGCTVPRGRKRLWIACGTAFHPSPTARA", "sequence_length": 467, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e0a860bcc2767d42b800ca21a09f19bb603c40671906a24d959e5d57d4e1cea3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FZK1.json", "taxon_id": "3702", "uniprot_accession": "Q9FZK1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/fba-1-pf07734.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07734", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/fba-1-pf07734.yaml" } ], "pfam_ids": [ "PF00646", "PF07734" ], "protein_name": "F-box protein ETP2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTIQEQLPNDLVEEILCRVPATSLRRLRSTCKAWNRLFKGDRILASKHFEKSAKQFRSLSLRNDYRIFPISFNLHGNSPSLELKSELIDPHSKNSAAPFEISRVIHCEGLLLCSSQLDESRVVVWNPLTGETRWIRTGDFRQKGRSFDVGYYYQKDKRSWIKSYKLLCYYRGTKYFEIYDFDSDSWRILDDIIAPRGSIGYSELSVSLKGNTYWFAKGVTEERPRTISLLKFDFYTEKSVPVLLPYQSRRLFQASSLSVVREDKLSVLLQLDQSSKTEIWVTNVIDETTKGAVSWTKVLALDLSPHLQIGNDGSFFLGEDKKVVMFCEKLIDENKVKDMVYIVGEDNVVTEVGFGVDEMDGCRAVILNYVPSLVQIERAGGNRKRGH", "sequence_length": 388, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8638ac89b2601d74713644d7e48c8220ef5aadbb03e719750b45e1e3f1d58248", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LJ74.json", "taxon_id": "3702", "uniprot_accession": "Q9LJ74", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-type-1-ipr006527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-type-1-ipr006527.yaml" } ], "pfam_ids": [ "PF00646", "PF07734" ], "protein_name": "Putative F-box protein At3g13825", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTLSNLSVDLVGEIFSRVPLISLSEVRCTCTTWNTLSWNILSENYVFGKADTSKQFLGFVVMNSKVCSLRLDLQGIHNNDFVDPSLKEINIVDQYDISNIFHCDGLLLCVRWIQPRSKYHKFHRLDMYAFGYDKQQQEPDEETVTLSCIRDEQLAVLYQPYDLCLDLFMEI", "sequence_length": 172, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a5ce61c2f72dfb6dfa12ac68594ea3d5d8c814b520fa90642aad91d384a6f289", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LRW5.json", "taxon_id": "3702", "uniprot_accession": "Q9LRW5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-type-1-ipr006527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-type-1-ipr006527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/fba-1-pf07734.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07734", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/fba-1-pf07734.yaml" } ], "pfam_ids": [ "PF00646", "PF07734" ], "protein_name": "F-box protein CPR1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGALRLYSVDLDSLDSVSDVEHPMKRGGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTLRIKDCPSSYSAELVVSSLVLGCKGDLNNIKYRKEQQAKEAREAKIMQNTKRRDDFLSKGFKLVL", "sequence_length": 413, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb66799c698d7835987ffa6fac5141a8183c3e25a8885799bfa3403c7b27d598", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SU30.json", "taxon_id": "3702", "uniprot_accession": "Q9SU30", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-domain-ipr017451.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR017451", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-domain-ipr017451.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-type-1-ipr006527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-associated-beta-propeller-type-1-ipr006527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/f-box-family-protein-tigr01640.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/f-box-family-protein-tigr01640.yaml" } ], "pfam_ids": [ "PF07734" ], "protein_name": "F-box protein At4g22390", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAECPTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILLRGPRLLRTVELDSPENVSDIPHPLQAGGFTEVFGSFNGVIGLCNSPVDLAIFNPSTRKIHRLPIEPIDFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNAIIKYDLASDDIGVLSFPQELYIEDNMDIGVLDGCVCLMCYDEYSHVDVWVLKEYEDYKSWTKLYRVPKPESVESVEFIRPLICSKDRSKILLEINNAANLMWFDLESQSLTTAGIECDSSFTADILVSSLVLGCKGDPTQAQRSKDQKMMPKSTKRWDGFLSKGFKLKL", "sequence_length": 402, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0a04096a45709016c71ce069f430050059c11bb936b14d6cb297ad06e49aa651", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SUY0.json", "taxon_id": "3702", "uniprot_accession": "Q9SUY0", "uniprot_release": "2026_03" } ], "pfam_id": "PF07734", "short_name": "FBA_1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07752", "short_name": "S-layer", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Encephalitozoon cuniculi (strain GB-M1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1609-pf07753.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07753", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1609-pf07753.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3654-pf12376.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3654-pf12376.yaml" } ], "pfam_ids": [ "PF07753", "PF12376" ], "protein_name": "UPF0329 protein ECU05_1680/ECU11_0050", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRIYAAWTLVAAAGVMDCSPRLEKAAAFTLGPDSQVIVFPFMFQGYNIVVLPTTKYGDLKGNARRRVASFLEHNISHAVWYFVVGGIAYKDDRSERLFSEMMDGYLKKISAGASKVYKGGRKMFSESLETVHEMIFECNKAGDGHVVKYGKSIINRLSDMIENAPTGISAEEKREYRRFWSRVKERAGFLYSTERLRRVVEVEKIVCNACKEICLKLKEEELMGLLAEGKMKKDLKATVDEDEIGHCLYLEYTVVNTSLLLDAHREHGGDVTRELVKQMLLGKKGDEIDRRYINKVANVVKERQRREMEKKEEEKKKEEEKKKEEEKRKEEKKKKKEEKKEEKKKKKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKSGKSLREGEASEEAEMPSVEVGGARRKTGKKSEGGRKRYKIHRRVSRWRKSPEKIKEEWDKGSEEKWRGRSLEEIKEQKVFHDIMGVLELLRSEDADKFFIDTGDYTKGGSERQRMVAIGVLESGGKRMAGVVEVGTFKDSSSGCPVVYHLMFRVTGIEGMGDVMSPEFAEANDIEKIDKNREYQDEGMFVYPRGVRFETVKETDAFQIVWGNPSNTSKVLRRLTIQRRPYVI", "sequence_length": 612, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bfe588e59a889ab0fbbf87f7d466c2e8fe864a54d64b59fc3f03a29abceacfa7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8STA9.json", "taxon_id": "284813", "uniprot_accession": "Q8STA9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Encephalitozoon cuniculi (strain GB-M1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1609-pf07753.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07753", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1609-pf07753.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3654-pf12376.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3654-pf12376.yaml" } ], "pfam_ids": [ "PF07753", "PF12376" ], "protein_name": "UPF0329 protein ECU06_1680", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRMLDDMIENPPAGMSEEEKKVYLEDWRSAKEWGGFLYSIERWERIAEVEKIVCNACKEICLGLREEELLGLLAEGGMKKTLKEEFSEDKAKDARYLEYIVVDDVLLLDAHREYGGEVTKELVRQMLLGKEGKDIDKRYVDRVAGVVRERQRKREEETERSVKELVGDEEKAKSKEEKAKSKEEKAKSKRGRKGKSASAPSEQEEEKKESEVEEAEQGGEVEALPVEVGGARSKGGKKKSKGGRKCFKIHRRVLRWTKSPEKIKEEWDKGSEERWKGRSLEEIKEQKIVHDITGVLELLRSEDADRFFMDAGKYRKGGSERQRMVAIGALETGGQRMTGVVEVGTFKDGDGCPVVYHLRFKPTSIGSIGDVINPGVVEASDVGRVDEGEECEDADKFVYPKGVRFETVKETGSFQIVWKNPSDTSEVLRRLIVYCRPCVI", "sequence_length": 440, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9e6e75307b386fd8ea9a9ad612f01ce896b595b97866a347a8e73b4b718309bc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8SV57.json", "taxon_id": "284813", "uniprot_accession": "Q8SV57", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Encephalitozoon cuniculi (strain GB-M1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1609-pf07753.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07753", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1609-pf07753.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3654-pf12376.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3654-pf12376.yaml" } ], "pfam_ids": [ "PF07753", "PF12376" ], "protein_name": "UPF0329 protein ECU03_0090", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRMWLVSAIALVDILCTSKIEELVENMGKKIEEALPHEFDSAEKEALKKHLKETAGLGTRLMVPCIFHEDRVVASPTTRYQDIDEEEKGYVEKVIALLPRLLWRSVAYIYVFGNDSWVVNLMEEVFETAPFKKSDAVALYKRARGRLGIRLIDLVNRTFRHNIGMLNRFGQRLAQEAEAKIQEISSSLSDEEKRKEEKMLQIIKEYGESLCTKEKQEEIIRAQEIMCDACACIWERDSNRESFVMETYSRHLYLRMIGSSMDVEEPLLSYIDHRGLIDAYEKYKSIDIVAELIKQVFTERGCISDESVNDAVCGVREREEAEKMRGEEERRKKEEESLRNTLELLRMEEKEKSKSRGKKKKGGKKGSGEVTAKMEEEKKDSEEVEESAEAEVSLEEMAVGGARSKERSSKKKSRSKGHRYKVHKRVLRWTKSAERIKAELDEGSEEKWRNKSIEEIEEQKKVHDIIEVCVLLRSLDANRFFVSTNRYMKDGTERWKMVGVGIFEEGGEKKVGKVEVGLYRDKGEGSVIYHLMFKAMDTEKAGKGARSSFGKGDDVEGLEEGAGELSDMSGFEYPKGVRSEIVKGGDAFKIVYRNPKDTSEVLRSLTVLQKAEVL", "sequence_length": 614, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6fec0e77568a65fe0f7c00e782e5a111bdaf946b518fb3eef6b488c885a5c0e1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8SW78.json", "taxon_id": "284813", "uniprot_accession": "Q8SW78", "uniprot_release": "2026_03" } ], "pfam_id": "PF07753", "short_name": "DUF1609", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/putative-zn-ribbon-rna-binding-protein-nf011481.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF011481", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/putative-zn-ribbon-rna-binding-protein-nf011481.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ribosomal-protein-as21-zinc-binding-pocket-ipr011668.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ribosomal-protein-as21-zinc-binding-pocket-ipr011668.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ribosomal-as21-pf07754.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07754", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ribosomal-as21-pf07754.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P81308", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07754" ], "protein_name": "Small ribosomal subunit protein aS21", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "35675b0b6d92d421236fc2b465577793447d8e8a6ac0a365d024ffa68d50b60c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGEMKYVCISCNAEIAPREKSTKFPCPNCGEVEIVRCERCRKLNNPYKCPKCGFEGP", "sequence_length": 57, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "35675b0b6d92d421236fc2b465577793447d8e8a6ac0a365d024ffa68d50b60c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P81308.json", "taxon_id": "243232", "uniprot_accession": "P81308", "uniprot_release": "2026_03" } ], "pfam_id": "PF07754", "short_name": "Ribosomal_aS21", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Tritonibacter scottomollicae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1611-n-pf17396.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17396", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1611-n-pf17396.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1611-pf07755.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07755", "section": 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"2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudoalteromonas sp", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1611-n-pf17396.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17396", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1611-n-pf17396.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1611-pf07755.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1611-pf07755.yaml" } ], "pfam_ids": [ "PF07755", "PF17396" ], "protein_name": "D-glutamate N-acetyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQIKPPYLLFIGDATDKLSIKMAQSLADWRAELCVGELSVNGCTVSTGLNQCSICEAAKLGAKTFVLGFANSGGVLDKKWLPIISEAIENGMNIVSGLHDKLTNFDELVSLSQKHNTNLLDIRHPSTAFATGKGYKRKGKRLLTVGTDCSVGKMYTSLSLEKAMKEQNIDVDFRATGQCGILISGSGVAIDCVIADFISGAAESLSPDAEETHWDIIEGQGSLSHPAFAGVSLGLLHGSQPDALVICHALNRTHMRGLLHTSFPSIETTIELNIAAAKLTNPDVQVVGISVNTSSVSIEQGNEICERLSQTFGVPCVDPLRDGVDSIVANLC", "sequence_length": 332, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d233fd888471e43669f332aeb0b2fac44fb59ce5fab9d43f3919864cdb20c35d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DXZ1.json", "taxon_id": "53249", "uniprot_accession": "P0DXZ1", "uniprot_release": "2026_03" } ], "pfam_id": "PF07755", "short_name": "DUF1611", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sinorhizobium fredii (strain NBRC 101917 / NGR234)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-13-pf11972.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11972", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-13-pf11972.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1612-pf07756.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07756", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1612-pf07756.yaml" } ], "pfam_ids": [ "PF07756", "PF11972" ], "protein_name": "Uncharacterized protein y4cF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYDLAKISTTALMRPAFEAGIGFTRLDERIARSPVGSGWIERMHFLDACASLWIDGELVHLEDLVLHDATRDIRTPTHELTIARDVLRTRRRIAAQSPDWPLSTEGIRTLRQTSDINPVGVEAVEPADVIRPAVAIDPEGEGDDGNDAKDLPGVDYAAIDAVLARSEAAIEDARRPGRAGANSWAAEKDPLVYDLDWDEDARLVEWRSVLRQAQDLPAVLQAIVALDAWNELSVLQHAPWLGRLLCASILREAGITTGAHLAAINLGLKTIPVDRRRHRGRETRLLAIAHGLLAAAEIGMKEHDRLTLAKTMMDRKLDGRRTSSKLPELVELVMAKPLVSAGMVSKTLEVTPQAARRIVTELGLREMTGRGRFRAWGVI", "sequence_length": 380, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c514cc438444ae145f3fb58126478ee1f479bb4aae2bcc33d2b0f801be8c8fd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P55388.json", "taxon_id": "394", "uniprot_accession": "P55388", "uniprot_release": "2026_03" } ], "pfam_id": "PF07756", "short_name": "DUF1612", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bet-v-1-trm44-n-pf28462.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28462", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bet-v-1-trm44-n-pf28462.yaml" } ], "pfam_ids": [ "PF07757", "PF28462" ], "protein_name": "tRNA (uracil-O(2)-)-methyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKVPAYWKPREPKNALTCDPPVPYDLQSSYQWQSILEHDTCYAAEVFDKMMIELVYHPERTSSVIMRTDIILDSQEDDSILNKQKSVFENLDERYQISRWIDRRIIPRNTNLDATMDQTVVVLHEKLENDRILMYLPHLDKSLEQPYNHLPYYHPAVAGIAFHYKGSSVEVLYLVEKDFQRELSSRLLRTAHMLLLVLHKHCKGAVEGYQKRMLHDTVVERNKFQDTYVILKDKYAKQLVDNWVEKTDPGKHVFEDLAIAAFLIELWKQTYSSNKEFSFVDVGCGNGLLVYLLLMEGYNGYGFDARKRKSWETYPLWVQVKLYEKVLVPYFLHDFETKIPFPQLPAGFTMSAANIHDGRFSENSFLIGNHADELTPYLPILARLNQKCYFMSIPCCVHDLTGAKISWALPKPRNPKHGGRYAMYIEWLMQLSEEVGWNIEVEPLRIPSTRNYALIGRKLLSNDLLHSSLSTDALYDIVEKNHGSQGFFVHAMQVAAANSRSH", "sequence_length": 502, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c4a030b700bba6adeb8f4d34cd776136c7bc434ce9dbf8cc9636d51992410816", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O74516.json", "taxon_id": "284812", "uniprot_accession": "O74516", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trna-ser-uridine-44-2-o-ribose-methyltransferase-activity-go0141101.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0141101", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trna-ser-uridine-44-2-o-ribose-methyltransferase-activity-go0141101.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trna-uridine-methyltransferase-activity-go0016300.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trna-uridine-methyltransferase-activity-go0016300.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trm44-n-terminal-bet-v1-like-domain-ipr060419.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR060419", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trm44-n-terminal-bet-v1-like-domain-ipr060419.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bet-v-1-trm44-n-pf28462.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28462", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bet-v-1-trm44-n-pf28462.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/adomet-mtase-pf07757.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/adomet-mtase-pf07757.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q02648", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07757", "PF28462" ], "protein_name": "tRNA (uracil-O(2)-)-methyltransferase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6d413659f711dda6db915cb71b63c2eec2fa83bef1514f1331cb7794fa005730", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTGDGSAHISKNNQNQHKDRFKFIVNDKSILGPQWLSLYQTDGKVTFAKSHFEQAMMNVIREPNINSTVILRADILKEINHAAEAGSEPKFDESVLKKFEIDNGNESGEEDVKKINIEDLNIRSCETSESLKLSPVHEFVRRIIPRNFYKDAIINQTCLILNSKDPNFQETSLIVYTPHINSEKDCPFYIPRTQSVGILLHQSVLSVHYIPFPEDKTAFTDESERVVRTAYRLLQTANKHSKGVMQGYEKRVNHDQVVNKVNFQNTYIVLKKKYSKFLVENWAESTDPKKHVFEDIAIAAFLIELWIKVYGPDFRSKMQFRDLGCGNGALCYILLSESIKGLGIDARKRKSWSIYPPEVQSSLKEQVIIPSILLRPHPALKRQVPHLEHNGRFFPVKVTHEVIAPATVVYSSEDLLKSPQVNTAEFPPDTFIIGNHSDELTCWIPLLGHPYMVIPCCSHNFSGQRVRFNVRKRSPRSNEIKNQNNSKSTYSGLVDHVEYISSRVGWKVEKEMLRIPSTRNAAIIGVENATLKHFPTQAVYDMIWEDGGAEGWIQNTMSLLKRNPRNH", "sequence_length": 567, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6d413659f711dda6db915cb71b63c2eec2fa83bef1514f1331cb7794fa005730", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q02648.json", "taxon_id": "559292", "uniprot_accession": "Q02648", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trna-ser-uridine-44-2-o-ribose-methyltransferase-activity-go0141101.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0141101", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trna-ser-uridine-44-2-o-ribose-methyltransferase-activity-go0141101.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trna-uridine-methyltransferase-activity-go0016300.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trna-uridine-methyltransferase-activity-go0016300.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/adomet-mtase-pf07757.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/adomet-mtase-pf07757.yaml" } ], "pfam_ids": [ "PF07757" ], "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFPGSTWTVIVEQIAEYEEVIDPKAFFDKIISLWKEYPNAISNRITTSVSVDTDSDLWNEVLRTFETHYKFCPRDCSEIAITKIIHKDLANNKFSDNAFEVSYYEEELLVRFYPITLDGMQHPHFESPYSIAIKIPTDTSIQLQFLKQANSSQEHFEFMKKQAFKQLYTWLKGIDLSKSSRKTNSLLDKESYIKTYRHIREDYGRGMIKGWTENSNPQKSIFEDCGIASYINELVNSDLLPKPNKFVDIGCGNGLLVHLLNKIGMSGYGIDVRHRNIWKTTLKDVDLREMPVDPQIVVQNEPHFDLDVDLLIGNHSDELTPWIPVMAAKLNCNFFLIPCCPFNFFGKYANNGSHLGPKRIVSQYESFFEWTVSVAERLGFDVKIDRLAIPSTKRLCIIGRVPEGGLCPNVDETINSMTEGQKFIARPKEIKTTNCMNIPVTDRERIAKKLFDFVLNYSDAVRDGWRCGGEVPLAQLAALLTEEDKKLMKDQDGGLQTFLRNQHQIFHVYQATARLRDFRQPVVQKRQSWKPKKAETIRKAPCWMSLHHPDGCPVGQEACRYEH", "sequence_length": 563, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7e66b7080e20dc8d6d1d903e94e99e4b81e0b6fe79086a6af4bf281002928eb9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q45EK7.json", "taxon_id": "6239", "uniprot_accession": "Q45EK7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bet-v-1-trm44-n-pf28462.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28462", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bet-v-1-trm44-n-pf28462.yaml" } ], "pfam_ids": [ "PF07757", "PF28462" ], "protein_name": "tRNA (uracil-O(2)-)-methyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSNTLHYTVEKSSILGPEWQSLYSTAEPVDFDKSHFEQAMLNVIRQPNVNSTVILRADMLIDNEYDLESGSCVKSEKKDIALGSDEGILKVNIDDLAPRSVPIALADVTTKFQFVRRIVPRNPFKDAIINQTCLVMNSNSDASTSLVIYIPHFDNAELCPFYIPQVAAVGILLHDHQLSVHYIPFAGQKELLFDPKQRVVRTAFRLLQTAYKHSKGVKDGYAKRVMHDVVVDKVLFQDQYIHLKKKYSKFLVDNWAESTDPKKHVFEDIAIAAFLIELWKKIYGAENTTNKMQFRDLGCGNGVLCYILIQEGFKGLGIDARQRKSWSIYPAEVKRCLKEQVIIPSVLLRPHPTMKLHAPHLQHNGRFFPMQLVSPQLIAPATVMYSSADLLQSPQVNIAEFPPDTFIIGNHSDELTCWIPLLGYPFMVIPCCSHNLSGNRIRYAVRDVERAKKLGNSTYQGLVDRVEYLADRVGWKTEKEMLRIPSTRNAAIIGYKNDKLNEFPTDEIYSILMEEGGADGWVANTMNLMKSNPRGH", "sequence_length": 537, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5ac0d52a15d53346f42ba97af2afc9a48d9d4fae0d2b771ebfc6053c77fb6eb9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6CR42.json", "taxon_id": "284590", "uniprot_accession": "Q6CR42", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trna-ser-uridine-44-2-o-ribose-methyltransferase-activity-go0141101.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0141101", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trna-ser-uridine-44-2-o-ribose-methyltransferase-activity-go0141101.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trna-uridine-methyltransferase-activity-go0016300.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trna-uridine-methyltransferase-activity-go0016300.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/adomet-mtase-pf07757.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/adomet-mtase-pf07757.yaml" } ], "pfam_ids": [ "PF07757" ], "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEVGRTGISYPGALLPQGFWAAVEVWLERPQVANKRLCGARLEARWSAALPCAEARGPGTSAGSEQKERGPGPGQGSPGGGPGPRSLSGPEQGTACCELEEAQGQCQQEEAQREAASVPLRDSGHPGHAEGREGDFPAADLDSLWEDFSQSLARGNSELLAFLTSSGAGSQPEAQRELDVVLRTVIPKTSPHCPLTTPRREIVVQDVLNGTITFLPLEEDDEGNLKVKMSNVYQIQLSHSKEEWFISVLIFCPERWHSDGIVYPKPTWLGEELLAKLAKWSVENKKSDFKSTLSLISIMKYSKAYQELKEKYKEMVKVWPEVTDPEKFVYEDVAIAAYLLILWEEERAERRLTARQSFVDLGCGNGLLVHILSSEGHPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLIGNHSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTCGFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPSPRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCAALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRLKRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFFMHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS", "sequence_length": 757, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "49b340fda0596742cc40dbcaa3c626accfe678461b668b98e64919f54a62ed15", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IYL2.json", "taxon_id": "9606", "uniprot_accession": "Q8IYL2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trna-ser-uridine-44-2-o-ribose-methyltransferase-activity-go0141101.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0141101", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trna-ser-uridine-44-2-o-ribose-methyltransferase-activity-go0141101.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trna-uridine-methyltransferase-activity-go0016300.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trna-uridine-methyltransferase-activity-go0016300.yaml" } ], "pfam_ids": [ "PF07757" ], "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEELGRVRLSDPDALLPAGFWAAVTVWLERPQVANKRLCGARMEARGRTLRSHAQAECGPRQGQGHGLEREPGQASPKGEPESGPRASREGTAPAADLNSLWDRVSQSLVHANPEMLAFLCGPSLGPQPEAAQELDLILRTVIPKASPHSPLTEPKKELVVQDVSSGSVTFLPLEEDNEGNLEVKTSNVYQLHLHHNEGEWFISVLIFCPERWHSDGVVYPKPAWLGEELLSKLARWAVENRKSEFKSTLSLVSILRYSRMYQELKEKYRDMVKVWPEVTDPEKFVYEDVAIATYLLILWEEERAEKGVTTKQSFVDLGCGNGLLVHILSNEGHPGRGIDIRRRKIWDMYGPQTQLEEGSITPSDETLFPGVDWLIGNHSDELTPWIPVIAARSSYTCRFFVLPCCFFDFVGRYQRQQSRKTQYREYLDFVLEVGLSCGFHVQEDCLRIPSTKRVCLIGKSRTYPPSAEVWMDEQRTRYLHSRQGHPQSRPGGAHAPSAPQTAAHDAGLQDSCRTVNAGSECVLEGLAAERGAGAPAPGLWVPGFCPREKAERVRNCAALPRDFVDQVVLQVANLLLDRKKFNTGNSEARSLKPWNGGGSLSLAEVAAELNSETLQRLKRECGGLQTLLKNSHQVFEVLNGRVHIRDWRQELQRGKPPEAKQNLSAAVFKTRICWFFAHHPDGCVLPAAQCPFAHGPEELRLSQTLKKQRQAP", "sequence_length": 713, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4681a85871433af79c38c7c03014ff82fa3fa162b656a39470fd272ff7c0c0ea", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D2Q2.json", "taxon_id": "10090", "uniprot_accession": "Q9D2Q2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trna-ser-uridine-44-2-o-ribose-methyltransferase-activity-go0141101.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0141101", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trna-ser-uridine-44-2-o-ribose-methyltransferase-activity-go0141101.yaml" } ], "pfam_ids": [ "PF07757" ], "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAVEEAQFWQAIGILIKNYHALNKKIFEVVITQVTKQQNGRVCESSAEELAMSLKEDPSQRTCTGFTIGFKLLSKKLAENILGTGIVDFENCLYECQFASDSIEGFSVGLLGGEFKLKSKSNTNWLEFVLRPKLLSWSQSKQDEAKVKSLGLVNVEKYNDLYKELKQRHSQRLLEHWKTAQESTDPLKFIYEDLAIAAYLIVLWSQTQSEPTAFADLGCGNGLLVHVLNAEGYKGYGYDIRKRKLWSLYPPDTQRSLIEKAVEPNSFRLDFPGVDWLIGNHSDELSPWLPVLAGRLNINYFLLPCCPFELSGAKFRRRNTKISAYQDFFQYVTQVSHECGYEILQDRLKIPSTKRLALLGIKRKASKAIEDLEYFVQEELRKYKTGDAKIKLREKEESVRNCTQVDKTIIDGLVFKIFKLILDSNEDKWSGRLPMREIAQALTKEELSGIKSECGGIKTLLRNKHEVFEFCGGDLIGIRTPKPTATLPKSHLTIKKRSCFFKLHHPLGCPLDDAECSFIH", "sequence_length": 521, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f36878bdf404667bce9d3d7cd97cefb5ad417bf91cb3909edab2f88597f981fa", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VHB9.json", "taxon_id": "7227", "uniprot_accession": "Q9VHB9", "uniprot_release": "2026_03" } ], "pfam_id": "PF07757", "short_name": "AdoMet_MTase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07758", "short_name": "DUF1614", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/external-side-of-cell-outer-membrane-go0031240.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031240", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/external-side-of-cell-outer-membrane-go0031240.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1615-pf07759.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07759", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1615-pf07759.yaml" } ], "pfam_ids": [ "PF07759" ], "protein_name": "Uncharacterized protein YaiW", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRVNPLSSLSLLAVLVLAGCSSQAPQPLKKGEKAIDVASVVRQKMPASVKDRDAWAKDLATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIAWQEIDRRAERMHIPAFLVHTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLINMVPMGQTLFGSLNPVRTGGPMQVSIAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYHLLNYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYDSKEPGKTELATRKLAAKLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAETKTGKSLPREMLPGIQLESPKITRNLTTAWFAKRVDERRARCMKQ", "sequence_length": 364, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c2f580505b00a1fd2a94ff6c65ccfc330e8bf89090414bd7a691197070346f61", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P77562.json", "taxon_id": "83333", "uniprot_accession": "P77562", "uniprot_release": "2026_03" } ], "pfam_id": "PF07759", "short_name": "DUF1615", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07760", "short_name": "DUF1616", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07761", "short_name": "DUF1617", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07762", "short_name": "DUF1618", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tectonic-1-3-domain-ipr011677.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011677", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tectonic-1-3-domain-ipr011677.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tectonic-1-3-n-terminal-domain-ipr057724.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057724", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tectonic-1-3-n-terminal-domain-ipr057724.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tctn-duf1619-pf07773.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07773", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tctn-duf1619-pf07773.yaml" } ], "pfam_ids": [ "PF07773", "PF25752" ], "protein_name": "Tectonic-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSLSPLSLLWGLLLLQGVLRPLRGDPVFIPPFIRMSSPEVRATLVGGSEDVAVSLSLLQVEEGVLPVPTCGGRRNETVDWNVTVSPRESTLEVTIRWKRGLDWCSADETASFSEPPCVLQMLLVSASHNASCLAHLLIQVEIYPNTSVTHNASENMTVIPNQVYQPLGPCPCDLTAKACDIQCCCDQDCQPEVRELFAQSCFSGVFGGHVSPPSHHHCAVSTTHQTPDWFPLLCVQSPPSTSPFLGHFYHGATSPRHSPGFEAHLHFDLRDFADASYKQGDPIMTTEGYFTIPQVSLAGQCLQDAPVAFLRNFDSVCTMDLEVHQGRDEIVLENMKIRTTGGPVTPTVTYEEAIDLDKFITSPDTVLSVGSAPRNVNVEEHYVFRWQNNSISGLDITVIRAEISAQQRGMMTQRFTVKFLSHHSGGEKEFSGNPGYQLGKPVRALHTAGMNVSTLHLWQPAGRGLCTAAALRPILFGENAFSGCLLEVGIKENCTQLRENVLQRLDLLTQATHVARRGNSDYSDLSDGWLEIIRAEAPDTGADLPLSSVNGVCPEVPARLSIRILTAEAGSVEGVAQREILAVETRFSTVTWQYQCGLTCEDKADLLPLSASVEFINVPAQMPHPPTRFQINFTEYDCTRNELCWPQLLYPLTQYYQGEPQSQCVAKGLMLLSLLMLAILLRHPWVRMCKARDSAAIYH", "sequence_length": 700, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7e74a0e59940138d4e8940a466f881dbdcba492cd0d21c3f71b9e94af31c22e0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q2MV57.json", "taxon_id": "10090", "uniprot_accession": "Q2MV57", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tectonic-1-3-domain-ipr011677.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011677", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tectonic-1-3-domain-ipr011677.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tectonic-1-3-n-terminal-domain-ipr057724.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057724", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tectonic-1-3-n-terminal-domain-ipr057724.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1619-n-pf25752.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25752", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1619-n-pf25752.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tctn-duf1619-pf07773.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07773", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tctn-duf1619-pf07773.yaml" } ], "pfam_ids": [ "PF07773", "PF25752" ], "protein_name": "Tectonic-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRPRGLPPLLVVLLGCWASVSAQTDATPAVTTEGLNSTEAALATFGTFPSTRPPGTPRAPGPSSGPRPTPVTDVAVLCVCDLSPAQCDINCCCDPDCSSVDFSVFSACSVPVVTGDSQFCSQKAVIYSLNFTANPPQRVFELVDQINPSIFCIHITNYKPALSFINPEVPDENNFDTLMKTSDGFTLNAESYVSFTTKLDIPTAAKYEYGVPLQTSDSFLRFPSSLTSSLCTDNNPAAFLVNQAVKCTRKINLEQCEEIEALSMAFYSSPEILRVPDSRKKVPITVQSIVIQSLNKTLTRREDTDVLQPTLVNAGHFSLCVNVVLEVKYSLTYTDAGEVTKADLSFVLGTVSSVVVPLQQKFEIHFLQENTQPVPLSGNPGYVVGLPLAAGFQPHKGSGIIQTTNRYGQLTILHSTTEQDCLALEGVRTPVLFGYTMQSGCKLRLTGALPCQLVAQKVKSLLWGQGFPDYVAPFGNSQAQDMLDWVPIHFITQSFNRKDSCQLPGALVIEVKWTKYGSLLNPQAKIVNVTANLISSSFPEANSGNERTILISTAVTFVDVSAPAEAGFRAPPAINARLPFNFFFPFV", "sequence_length": 587, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "855f7868cb070c0f043086b1447782e5b2da87ef3e61e56cfa11757729f38511", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q2MV58.json", "taxon_id": "9606", "uniprot_accession": "Q2MV58", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": 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"ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tctn-duf1619-pf07773.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07773", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tctn-duf1619-pf07773.yaml" } ], "pfam_ids": [ "PF07773", "PF25752" ], "protein_name": "Tectonic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKEVLPLVVLCLATYHTHSIKIGISHNYNATISPTASTTTEAPATTGAPSSETVSSISTLPEAEVTTTTPAITFPPRVQQKPKVAVASPTMSTALPLNSTEVNSTLSVSGDNTFYYCSCDLQAGRCDLNCCCDNDCPLETRQVFNCLPNSLLPQLESRLEDFQYTHGLPTCQINDGWLCVFRSNTKATKTQPPDMNIDTSQYRKWKDNLEYQESDYAQSRPSAGHYKFGQTLQLWQPETKQLATLELPAAYESPNCQLKQSVWHLQPIRHVCRMKDSAQLQESIWSLLNQTSNYEILSKPRDLEEPEVNGLIVQVCLRGANKSMRCLERGNDTQLDVIVDHVELQLIHNFTNILEAKLFLEEAKLAEDDNEPLWLRYNVEFVTLNESLTKPTSGPLGYLSGAPVILSRMLPQNSSEDKQLISYHSLNQNIKEFHWLSLPSRKPRGSSCQRALDHKEALRFGIDLLTRCELRHAAPLLQAHANHTEYCQGLQAQIWSLLLPHNCTQLEDVTKVFVSHLGRPQPDKWLPMEVRYPENVHEMPPPVQAVYDEMRQSLSCRNIFLSVGYEFHVAHLAMVEGRAPHQRVLQHARLVLGQRHDLEFDTSEIEVALPLSISAMFYRMQTKALSNGAAVGIAGHLVLVEMIYLGIIYLGSMQLCL", "sequence_length": 657, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0c9947f5a781b2444cb9887d62d1ce3f5b081a3661f86b9e44d02d2619e5ae67", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VMH0.json", "taxon_id": "7227", "uniprot_accession": "Q9VMH0", "uniprot_release": "2026_03" } ], "pfam_id": "PF07773", "short_name": "TCTN_DUF1619", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/er-membrane-protein-complex-subunit-1-c-terminal-ipr011678.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011678", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/er-membrane-protein-complex-subunit-1-c-terminal-ipr011678.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/emc1-c-pf07774.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07774", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/emc1-c-pf07774.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P25574", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07774" ], "protein_name": "ER membrane protein complex subunit 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e702dcff14465d7ae6f6edac9ed5013082a8a47e55aa4e9ca5a2dc2521bd9bfe", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKITCTDLVYVFILLFLNTSCVQAVFSDDAFITDWQLANLGPWEKVIPDSRDRNRVLILSNPTETSCLVSSFNVSSGQILFRNVLPFTIDEIQLDSNDHNAMVCVNSSSNHWQKYDLHDWFLLEEGVDNAPSTTILPQSSYLNDQVSIKNNELHILDEQSKLAEWKLELPQGFNKVEYFHREDPLALVLNVNDTQYMGFSANGTELIPVWQRDEWLTNVVDYAVLDVFDSRDVELNKDMKAELDSNSLWNAYWLRLTTNWNRLINLLKENQFSPGRVFTKLLALDAKDTTVSDLKFGFAKILIVLTHDGFIGGLDMVNKGQLIWKLDLEIDQGVKMFWTDKNHDELVVFSHDGHYLTIEVTKDQPIIKSRSPLSERKTVDSVIRLNEHDHQYLIKFEDKDHLLFKLNPGKNTDVPIVANNHSSSHIFVTEHDTNGIYGYIIENDTVKQTWKKAVNSKEKMVAYSKRETTNLNTLGITLGDKSVLYKYLYPNLAAYLIANEEHHTITFNLIDTITGEILITQEHKDSPDFRFPMDIVFGEYWVVYSYFSSEPVPEQKLVVVELYESLTPDERLSNSSDNFSYDPLTGHINKPQFQTKQFIFPEIIKTMSISKTTDDITTKAIVMELENGQITYIPKLLLNARGKPAEEMAKDKKKEFMATPYTPVIPINDNFIITHFRNLLPGSDSQLISIPTNLESTSIICDLGLDVFCTRITPSGQFDLMSPTFEKGKLLITIFVLLVITYFIRPSVSNKKLKSQWLIK", "sequence_length": 760, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e702dcff14465d7ae6f6edac9ed5013082a8a47e55aa4e9ca5a2dc2521bd9bfe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P25574.json", "taxon_id": "559292", "uniprot_accession": "P25574", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Gallus gallus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-emc1-n-pf25293.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25293", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-emc1-n-pf25293.yaml" } ], "pfam_ids": [ "PF07774", "PF25293" ], "protein_name": "ER membrane protein complex subunit 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAGLWALLLPLAAAVYEDQVGKFDWRQQYVGKLKFASLEAAQGSKKLLVGTEKNVVAALNSRSGEILWRHADKATPEGAIDAMLIHGQDAITVSSAGRILRSWETNIGGLNWETSLDTGSFQTASLVGLQDAVKYVAVLKKAAISLHYLSNGHQKWVEHLPESENTQYQMLYSRGAGVIHVLGVVPQSHLKVLTLSVEDGEVIEQTKVAAPWLKSLNGACGVVGEAVLVCADTATHSLYVCSLETEQEMKQIPLQSLDLEFADGFQPRVLATQPSVINASRTQFFLQLSPGHFSLLQCKQGLLSHLRDFQQAALVSFATTGEKTVAAVLTCRNELKPASSDGLHGNALEDSQKQEALTCSNQTYNINLYLVETGQRLLDTTITFNLEQNGAKPEQLYIQVFLKKDDSVGYRALVQTEDHMLMFLQQPGKVVWSREESLAEVVSLEMVDLPLTGAQAELEGEFGKKADGLLGMFLKRLSSQLILLQAWTAHLWKMFYDARKPRSQIKNEINIDNLARDEFNLQKMMVMVTASGKLFGIESSSGTILWKQYLRNVRPGASLKLMVQRTTAHFPHPPQCTLLVKDKETKMSFLYVFNPIFGKRSQVAPPVLKRPVLQTLLLPIMDQDYAKVLLLIDDEYKVTAFPATKNVLRQLEEMAHSIFFYLVDAEQGKLSGFRLKKDLTTEESWQVAIPTEVQRIVTVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDTHHERTFVGIYLIDGVTGRIIHSSVQKKAKGPVHIVHSENWVVYQYWNTKARRNEFTVLELYEGTEQYNATAFSSLDRPLLPQVLQQSYIFPSAISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAERFINYNQTVSQIRGIYTSPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATMITKRLAQVKLLNRAWR", "sequence_length": 983, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c4fb5ef37117ea227d00375f58cf1688f2197d987d58ef1959563872faab835", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5ZL00.json", "taxon_id": "9031", "uniprot_accession": "Q5ZL00", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/emc1-first-beta-propeller-domain-ipr058545.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR058545", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/emc1-first-beta-propeller-domain-ipr058545.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/er-membrane-protein-complex-subunit-1-c-terminal-ipr011678.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011678", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/er-membrane-protein-complex-subunit-1-c-terminal-ipr011678.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-emc1-n-pf25293.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25293", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-emc1-n-pf25293.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/emc1-c-pf07774.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07774", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/emc1-c-pf07774.yaml" } ], "pfam_ids": [ "PF07774", "PF25293" ], "protein_name": "ER membrane protein complex subunit 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVAVASGFWIWAAVLLVPAAAVYEDQVGKFDWRQQYVGKIKFASLEFSPGSKKLVVATEKNVIAALNSRTGEILWRHVDKGTAEGAVDAMLVHGQDAITVSNGGRLMRSWETNIGGLNWEITLDTGSFQALGLVGLQESVRYIAVLKKTTLTLHHLSSGHLKWVEHLPESDSILYQMVYSYGSGVVWALGIVPFSHVNIVKFNVEDGEIVQQVRVWTPWLQHLTGACGVVDEAVLVCPDPSSHSLHTLALETEWELRQIPLQSPDLEFGSGFQPQVLPTQPSPVAPSRAQFFLQLSPSHYALLHYHHGAVTLLKNFPQATLVSFATTGEKTVAAVMTCRTEVQKPVSAGDGSVASFPETSGAQDSLACFNQTYTINLYLVETGRRLLDTSISFSLEQKGTRPEQLYIQVFLKKDDSVGYRALVQTQDHLQLFLQQLAGKVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKAAIQDGLLGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVTVTASGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKETGMSSLFVFNPIFGKWSQVAPPVLKRPILQSLLLPVMDQDYAKVLLLVDDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLSGYQLRKDLTTELSWELTIPPEVQRVVKVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDVHHERTFIGIFLIDGVTGRIIHSSVQKKARGPVHLVHSENWVVYQYWNSKARRNELTALELYEGTEQYNATAFSSLDRPQLPQVLQQSYIFPSSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQVHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATMITKRLAQVKLLNRAWR", "sequence_length": 997, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "948a3fef6e9f18ff8f4d7ddf61837c5910607549c09c29179fca2458fe97b50c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C7X2.json", "taxon_id": "10090", "uniprot_accession": "Q8C7X2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/emc1-first-beta-propeller-domain-ipr058545.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR058545", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/emc1-first-beta-propeller-domain-ipr058545.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/er-membrane-protein-complex-subunit-1-c-terminal-ipr011678.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011678", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/er-membrane-protein-complex-subunit-1-c-terminal-ipr011678.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-emc1-n-pf25293.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25293", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-emc1-n-pf25293.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/emc1-c-pf07774.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07774", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/emc1-c-pf07774.yaml" } ], "pfam_ids": [ "PF07774", "PF25293" ], "protein_name": "ER membrane protein complex subunit 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAEWASRFWLWATLLIPAAAVYEDQVGKFDWRQQYVGKVKFASLEFSPGSKKLVVATEKNVIAALNSRTGEILWRHVDKGTAEGAVDAMLLHGQDVITVSNGGRIMRSWETNIGGLNWEITLDSGSFQALGLVGLQESVRYIAVLKKTTLALHHLSSGHLKWVEHLPESDSIHYQMVYSYGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQHLSGACGVVDEAVLVCPDPSSRSLQTLALETEWELRQIPLQSLDLEFGSGFQPRVLPTQPNPVDASRAQFFLHLSPSHYALLQYHYGTLSLLKNFPQTALVSFATTGEKTVAAVMACRNEVQKSSSSEDGSMGSFSEKSSSKDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQSGTRPERLYIQVFLKKDDSVGYRALVQTEDHLLLFLQQLAGKVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKADGLLGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVTASGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKESGMSSLYVFNPIFGKWSQVAPPVLKRPILQSLLLPVMDQDYAKVLLLIDDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVKVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDAHHERTFIGIFLIDGVTGRIIHSSVQKKAKGPVHIVHSENWVVYQYWNTKARRNEFTVLELYEGTEQYNATAFSSLDRPQLPQVLQQSYIFPSSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATMITKRLAQVKLLNRAWR", "sequence_length": 993, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8feff9ca93c89bb0da9aafabf47d336d03755da0020af457510fc4a67231602f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N766.json", "taxon_id": "9606", "uniprot_accession": "Q8N766", "uniprot_release": "2026_03" } ], "pfam_id": "PF07774", "short_name": "EMC1_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07784", "short_name": "DUF1622", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1623-pf07785.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07785", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1623-pf07785.yaml" } ], "pfam_ids": [ "PF07785" ], "protein_name": "Uncharacterized 11.2 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLTANVLYVSNKLDFVFDLQKCFVVEQLQCYNRDSLALVVTSDSVSCPSELVHTKDTFERSQLELLEKAEFSVQIVDHLRLKIRHIVNKYNETFAD", "sequence_length": 97, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "652a45f1244798a7b9af534edc8c3425612c6b11e17608a39ff1e8a7c28565ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10356.json", "taxon_id": "262177", "uniprot_accession": "O10356", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1623-pf07785.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07785", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1623-pf07785.yaml" } ], "pfam_ids": [ "PF07785" ], "protein_name": "Uncharacterized 11.0 kDa protein in HE65-PK2 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHLTANVLLVPNALKKRDVKYIYNTYLKNYSVIEGVMCCNGDCLAVVVLDRNQLQNTDMEVLESLEYTSDNIELLCEKICVIVDNYDKYYQKNCV", "sequence_length": 95, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dd7214a37b0fbd03220503149d1418bd5720d2a54184ee6763f9f954a8cb65f5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41670.json", "taxon_id": "46015", "uniprot_accession": "P41670", "uniprot_release": "2026_03" } ], "pfam_id": "PF07785", "short_name": "DUF1623", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf418-ipr007349.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007349", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf418-ipr007349.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/heparan-alpha-glucosaminide-n-acetyltransferase-catalytic-domain-ipr012429.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012429", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/heparan-alpha-glucosaminide-n-acetyltransferase-catalytic-domain-ipr012429.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hgsnat-cat-pf07786.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07786", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hgsnat-cat-pf07786.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf418-pf04235.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04235", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf418-pf04235.yaml" } ], "pfam_ids": [ "PF04235", "PF07786" ], "protein_name": "Uncharacterized protein YrkO", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIVQKEGRGQPVSLRERVHFLDIVRGFALLGIIIVNYFLIVDSVKGFEMASDDVLHKLVSWFAEGKFVTLFSFLFGVGFMIFMDRAAQKVESPNKLFARRLSILLGFGILHITFVWVGDILAFYAVSGFLLLAFYKRTAKTVLRWIIALIVFQFLTPVFTMLYNVINTAGSKNPNFSEFTLFSHSSLTYMESISTRWTDMVTMAAGSFSMIYSMFLMFLLGVYFVKMEFFKDMEAKKPIWKRIWIISTIAFLITQSSILLDMFNLSENMLWKDISSVLGQNGGLTGSMFYMSTFAMLFLYLPQLRGPMMIFTKVGRMSLTCYLLHSIIGTVLFLRYGFGLADHIQSAGTFMFSLAVYFVLMSFSTLWLKRFRYGPMELVWRKLTYGKVNGSPKATPLHSEKSIQK", "sequence_length": 405, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "55a4c0f63c164e082fe65e983b9b636a52db1452fb671731aea9af7a95aeb0a7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54442.json", "taxon_id": "224308", "uniprot_accession": "P54442", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/heparan-alpha-glucosaminide-n-acetyltransferase-activity-go0015019.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015019", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/heparan-alpha-glucosaminide-n-acetyltransferase-activity-go0015019.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/heparan-alpha-glucosaminide-n-acetyltransferase-catalytic-domain-ipr012429.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012429", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/heparan-alpha-glucosaminide-n-acetyltransferase-catalytic-domain-ipr012429.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hgsnat-cat-pf07786.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07786", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hgsnat-cat-pf07786.yaml" } ], "pfam_ids": [ "PF07786" ], "protein_name": "Heparan-alpha-glucosaminide N-acetyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGGSSSRRRRAEERSSAAGTERNSRREAVGGMGAGPALAALLLAGSVLSATLLAPGRRAEPDLDEKRNVELKMDQALLLIHNELLGTSLTVYWKSDDCYQCTFQPLANVSHGGKPAKPSVAPVSVSTQHGSILQVNSTSEERAACRLEYKFGEFGNYSLLVQHASSGANKIACDIIVNENPVDSNLPVSIAFLVGLALIVAVSLLRLLLSLDDVNNWISKTIASRETDRLINSELGSPSRADPLSADYQPETRRSSANRLRCVDTFRGLALVLMVFVNYGGGKYWYFKHSSWNGLTVADLVFPWFVFIMGTSIFLSMTSILQRGCSKLKLLGKIVWRSFLLICIGVIIVNPNYCLGPLSWDKVRIPGVLQRLGVTYFVVAVLEFFFWKPVPDSCTLESSCFSLRDITSSWPQWLTILTLESIWLALTFFLPVPGCPTGYLGPGGIGDLGKYPHCTGGAAGYIDRLLLGDNHLYQHPSSTVLYHTEVAYDPEGVLGTINSIVMAFLGVQAGKILVYYKDQTKAILTRFAAWCCILGLISIVLTKVSANEGFIPINKNLWSISYVTTLSCFAFFILLILYPVVDVKGLWTGTPFFYPGMNSILVYVGHEVLENYFPFQWKLADEQSHKEHLIQNIVATALWVLIAYVLYKKKLFWKI", "sequence_length": 656, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "41d9f3b81a8bddefa81fa1a4fb9ba65ed2c2c7b7e68f40d13164dda5ac58b4e8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UDW8.json", "taxon_id": "10090", "uniprot_accession": "Q3UDW8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/heparan-alpha-glucosaminide-n-acetyltransferase-activity-go0015019.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015019", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/heparan-alpha-glucosaminide-n-acetyltransferase-activity-go0015019.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/heparan-alpha-glucosaminide-n-acetyltransferase-catalytic-domain-ipr012429.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012429", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/heparan-alpha-glucosaminide-n-acetyltransferase-catalytic-domain-ipr012429.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hgsnat-cat-pf07786.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07786", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hgsnat-cat-pf07786.yaml" } ], "pfam_ids": [ "PF07786" ], "protein_name": "Heparan-alpha-glucosaminide N-acetyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGARASAAEQRRAGRSGQARAAERAAGMSGAGRALAALLLAASVLSAALLAPGGSSGRDAQAAPPRDLDKKRHAELKMDQALLLIHNELLWTNLTVYWKSECCYHCLFQVLVNVPQSPKAGKPSAAAASVSTQHGSILQLNDTLEEKEVCRLEYRFGEFGNYSLLVKNIHNGVSEIACDLAVNEDPVDSNLPVSIAFLIGLAVIIVISFLRLLLSLDDFNNWISKAISSRETDRLINSELGSPSRTDPLDGDVQPATWRLSALPPRLRSVDTFRGIALILMVFVNYGGGKYWYFKHASWNGLTVADLVFPWFVFIMGSSIFLSMTSILQRGCSKFRLLGKIAWRSFLLICIGIIIVNPNYCLGPLSWDKVRIPGVLQRLGVTYFVVAVLELLFAKPVPEHCASERSCLSLRDITSSWPQWLLILVLEGLWLGLTFLLPVPGCPTGYLGPGGIGDFGKYPNCTGGAAGYIDRLLLGDDHLYQHPSSAVLYHTEVAYDPEGILGTINSIVMAFLGVQAGKILLYYKARTKDILIRFTAWCCILGLISVALTKVSENEGFIPVNKNLWSLSYVTTLSSFAFFILLVLYPVVDVKGLWTGTPFFYPGMNSILVYVGHEVFENYFPFQWKLKDNQSHKEHLTQNIVATALWVLIAYILYRKKIFWKI", "sequence_length": 663, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6f365b9098ed024004ad8897adda0b25ab07c89c7c3fc9f9b37e46bb7efb2ca7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q68CP4.json", "taxon_id": "9606", "uniprot_accession": "Q68CP4", "uniprot_release": "2026_03" } ], "pfam_id": "PF07786", "short_name": "HGSNAT_cat", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/nuclear-membrane-organization-go0071763.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071763", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/nuclear-membrane-organization-go0071763.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem43-pf07787.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07787", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem43-pf07787.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9BTV4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07787" ], "protein_name": "Transmembrane protein 43", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "57188f2ba974ec689e5fe49477c59255dc058444d840cbfbf1a6c83663e0d1f1", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAANYSSTSTRREHVKVKTSSQPGFLERLSETSGGMFVGLMAFLLSFYLIFTNEGRALKTATSLAEGLSLVVSPDSIHSVAPENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVEMYQWVETEESREYTEDGQVKKETRYSYNTEWRSEIINSKNFDREIGHKNPSAMAVESFMATAPFVQIGRFFLSSGLIDKVDNFKSLSLSKLEDPHVDIIRRGDFFYHSENPKYPEVGDLRVSFSYAGLSGDDPDLGPAHVVTVIARQRGDQLVPFSTKSGDTLLLLHHGDFSAEEVFHRELRSNSMKTWGLRAAGWMAMFMGLNLMTRILYTLVDWFPVFRDLVNIGLKAFAFCVATSLTLLTVAAGWLFYRPLWALLIAGLALVPILVARTRVPAKKLE", "sequence_length": 400, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "57188f2ba974ec689e5fe49477c59255dc058444d840cbfbf1a6c83663e0d1f1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BTV4.json", "taxon_id": "9606", "uniprot_accession": "Q9BTV4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-cell-communication-by-electrical-coupling-go0010650.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010650", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-cell-communication-by-electrical-coupling-go0010650.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem43-pf07787.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07787", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem43-pf07787.yaml" } ], "pfam_ids": [ "PF07787" ], "protein_name": "Transmembrane protein 43", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAANYSSTSSRKEHVKVTSEPQPGFLERLSETSGGMFVGLMTFLLSFYLIFTNEGRALKTATSLAEGLSLVVSPDSIHSVAPENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVEMYQWVETEESSEYTEDGQVKKETKYSYNTEWRSEIVNSRNFDREIGHKNPSAMAVESFTATAPFVQIGRFFLSAGLIDKIDNFKALSLAKLEDPHVDIIRRGDFFYHSENPKYPEVGDVRVSFSYAGLSSDDPDLGPAHVVTVIARQRGDQLIPYSTKSGDTLLLLHHGDFSAEEVFRREQKSNSMKTWGLRAAGWMAMFMGLNLMTRILYTLVDWFPVFRDLVNIGLKAFAFCVATSLTLLTVAAGWLFYRPLWAALIGCLALVPIIIARTRVPAKKLE", "sequence_length": 400, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6dd347e086bacaaab71164878a19ce11a66fd90f561371990b6d8b1a00ba0b39", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DBS1.json", "taxon_id": "10090", "uniprot_accession": "Q9DBS1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem43-pf07787.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07787", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem43-pf07787.yaml" } ], "pfam_ids": [ "PF07787" ], "protein_name": "Transmembrane protein 43 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLSETLRSHWPIALFGVILFVAGGTELYWNEGRAVHNMMALDEAHADIYSVRFTEEEQEVGLEGRIVHLSGPILVGEPLTEPDYNIQLLAVKLRRRVQMYQWVEEAVEHNYGDSVGTTHSDSRTYYYTREWRDKIVDSRNFYNRHGHTNPSHFPIESHVQVADAVFIGRYELGAEVKEKFNNYQELTSDIRPEDSGVKLHLGIYYHTNDVFNPEVGDLRLLFSFAGMEGEVFSVVGKLSGNKLVPYITSRGVPVLLVYPGGLSVQEVFRLEARAQVLHTWWWRFVGWLLIFFGVTCNTKILRLLFVRVPLLVALAPDPQFPVTGNLLIAFSLALTIAAVAWILHRPVIGACLLLAGASPYVWFTRNLVDYHRLD", "sequence_length": 376, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7205bb0713b4c14344f57752cd04871e420c18e8c434793839ea03d86f062668", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VSB9.json", "taxon_id": "7227", "uniprot_accession": "Q9VSB9", "uniprot_release": "2026_03" } ], "pfam_id": "PF07787", "short_name": "TMEM43", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07788", "short_name": "PDDEXK_10", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1627-pf07789.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07789", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1627-pf07789.yaml" } ], "pfam_ids": [ "PF07789" ], "protein_name": "Protein YdaW", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METVFDALKAMGKATSIELAARLDISREEVLNELWELKKAGFVDKSAYTWRVADNNVQQEQPAQAELPEEITTATVAKISECDLTATIEQRGPQTADELATLFGTTSRKVASTLAMAISKGRLIRVNQGGKFRYCIPGDNLPAEPKAASVSPLWLSASSSACHGVLIITVITPSPTKNSATKMPEN", "sequence_length": 186, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d72756f8bd5cdbf97d9d2b5046b688baf7619533e4813bb7ec37bed00b600063", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76066.json", "taxon_id": "83333", "uniprot_accession": "P76066", "uniprot_release": "2026_03" } ], "pfam_id": "PF07789", "short_name": "DUF1627", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07790", "short_name": "Pilin_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07791", "short_name": "Imm11", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/afi1-pf07792.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07792", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/afi1-pf07792.yaml" } ], "pfam_ids": [ "PF07792", "PF08616" ], "protein_name": "AFI1-like protein C776.06c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMQIDYLLTAIFDPDRGPVLQYQCPENGEASDLHFLAELMLPDRVHERREDWSLFFIHFSKKSNVFSLFSNVDDINFEPSDSNMYYVLNTIRAKRVEGTRRGGSVFAMAICTTFPHVHALKPLLDTAWEIFDSSPSLKTLSMLHKSFNLHNFQSFYQKLSLDSSLILALNNFWSFFNLYLTNSPHIMNDIINKDIDNIPKPGSELIELSRDSYNSQATFCLSAESQERYVTCVIPSIHIPECVGEVSISNLINTFIDGPSPFMNTDISADINPINVLITALLISKKVLFLTKTSSASVLADFVLSSCALVSGATGLLQGLTRITFPYIDLSNVESLVKLPGYLAGVMNPAFTHHADWWDVLCDIDNQTIQVSSNLFSDATTTMDTKSLFNNTSPFTPISKDNQDDEIFIKDLRKFLKADDKETLVRWRVRLYIQSFIRKATSYEALFLESSPLNPYYKDYKFKGFGWSWDNDDEKVNELLYLAPKFEAWRQASTYKDYCYRLHCASTPVLRCMDIQFHLDRLRNSSLSTTDAAEIFLALESHIRTEEDVNYLLSNCPLHSGGLSVIAFGLYHISDKVRKAVSKLLNRIETHKYGKLFYMALNKVDISTHVYINSQHKKKKDSF", "sequence_length": 623, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c43cd1e04e530cb8f8bd17d8e72f7c0ae60bc4bb0419d98b176316e0160fa5a8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O94674.json", "taxon_id": "284812", "uniprot_accession": "O94674", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/afi1-pf07792.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07792", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/afi1-pf07792.yaml" } ], "pfam_ids": [ "PF07792", "PF08616" ], "protein_name": "Protein mesA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSIPLPIRTSDGTGNLSSSPPKSNGLPRLSPSPSFVQKHSPRSSDTSGLRRSASHHNARQTFKQRRCKSQYPRDSPERHVEFILVASFHIDRGPIMEHQYPGPISSDEGMLAELMLPDQTHVRSQDWTIFFLPLDTGGEGEEDDLAGENNKRKGKRNRVRSSSGDEGTSADTNNESEVTEEEESSDEEDGGEGPPLMYVLNLVNTKQDNTVKRGAVVKAMAICTRHSFLHIYKPILLLALEDYFKNPYPETLETLYNAVNAMDLSPMPKLNLLERQILQATNSKDMFIEKFEQMVQQRAIEDGENDIDEDNPPSPRRGTAPRYTLPRDTHEFESKIIYNDIPIPVKVPTVIWPEIVGDFSLVKLIQIFSAPHAASPQPFPLHPHLTTSGPLTHPIIVLVNAMLTQKRVVFLGHNRPSGEVAEAVLAACALASGGILRGFTRHAFPYTDLTKIDDLLRVPGFIAGVTNPTFANHPEWWDVLCDLPTGRIKISNHIEPAPVTDGQLYFQQQSPVSASGPNADPTGDNLFMEDVLRSIANRYGENAIRAKWRAYITKFTRVAAAFEETVYGASNIYIIGPNEELSPDSPSGLQSDPGDPTTIRGHGYVWPDEASKQRELMASVSRIEGWRTTRSYYSFIQDIAAMYWPSRPIQKPDLHHHHDRLRTLKLSAYEAGAIYLAFAHAIKDYAGICQLLTVTPESQAGLFYLSMGLLHPDRNVREATADLLERIALHPAGRHFWAQLNRFAKTAYFRIKREKEAAGNSSPIVKSPSDSFGPQQSLVGVAISGVHSQGS", "sequence_length": 791, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bb9b1a9c38724090b96385b0cbc3f50541f5a2fcf7f417ee95681d47a3553de1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5BGR2.json", "taxon_id": "227321", "uniprot_accession": "Q5BGR2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/arf3-interacting-protein-1-n-terminal-domain-ipr012860.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012860", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/arf3-interacting-protein-1-n-terminal-domain-ipr012860.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/afi1-pf07792.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07792", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/afi1-pf07792.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spa-pf08616.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08616", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spa-pf08616.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q99222", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07792", "PF08616" ], "protein_name": "ARF3-interacting protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "36654082c8d5c092e46aacb5a40cbf07d9141a8d8fefd1bddc1d0dc734f85212", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLRRELNNSISNRSIENESFPFERPNVSYIISAEFDNKLGPILKHQYPKDIPGFNQFSHEQRNGNTSVSMNLASLMIPSSIERNPGKQDITVFTLYYNKFTQNYQLFPVPKDPRFSFNLHHREQSDGSVTNSIYYDAENHQDAKNNRYTIVLEDDELECQEVQNNQKAIDNEPLFFINVANTVLDTTNDRGAVIKSIAIGTPLKTFFAFKNIIVLVLDLYMKAPTQAAATDILLDCFNMLNSIDLTLINDIHSKSSIQEVLHSIHDESIITKVFLDPDSTLKKLFCINGFDTKDKYGNIVTFHDQLIQYHFTRFQPKTLPPFLLKIPLQFNMIRREPIYIENDYNELVLKFLDKFVPYLLKAGQKVNAWKLVINSTKLSKEDLCAFILSLANITATYASDPQSYFKGNAALIFPYMDISLVDGLRAYVASNSDFVGCFAIIGTANPIFRYQLDIWDYYYDVDEGVFYENNSPEKEKPDTVAEVKIGPNPLRKIFNRPHFSTNAVNESQVNLGQKLFSLLIDEYHDSDTIMSVLRRLNVLQLENLLDALKRREIPPNIALKDEYIMFYKDFFIFPEFFDYFTLHSIELLSNLDNCLFSLGNTCQLFSTEQIYSQLSQILDIVKELFRMVSVSRTNIEKFLNACLNYSPFKILPTAQLHGDNISRWSFESEVRQGFDNFNSYMGIEKDPHGVIVSAIDLFTQIYSFDILAFFLTFITKESGQDLPFTKSLSRRRTYLTRIAQSSSLRQFLQLSTRPNIRILGGNGQGTGNSNYPEFTNASSVISPKLRASPLLERRASKICYAITKLLYRLECHPIGMALLKKYLHNQLREAYLESKRHFISKKGDSTNTSSTIASSSFAGASVPLSSNESGMLNGLKQINEQQESTLETTQKED", "sequence_length": 893, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "36654082c8d5c092e46aacb5a40cbf07d9141a8d8fefd1bddc1d0dc734f85212", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q99222.json", "taxon_id": "559292", "uniprot_accession": "Q99222", "uniprot_release": "2026_03" } ], "pfam_id": "PF07792", "short_name": "Afi1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07793", "short_name": "DUF1631", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07794", "short_name": "DUF1633", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07795", "short_name": "DUF1635", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07796", "short_name": "DUF1638", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07797", "short_name": "DUF1639", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ccdc90-like-pf07798.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07798", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ccdc90-like-pf07798.yaml" } ], "pfam_ids": [ "PF07798" ], "protein_name": "Mitochondrial calcium uniporter regulator 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDCGSVGGQRTQRLPGRQRLLFLPVGLSGRPGGSETSARRCLSALSDGLGALRPRAPAARGGVSRASPLLLLLLVPSPRLAAAAPRRQLGDWERSRLGYAAPPAGRSSAWRCSPGVAAAAGALPQYHGPAPALVSCRRELSLSAGSLQLERKRRDFTSSGSRKLYFDTHALVCLLEDNGFATQQAEIIVSALVKILEANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILEKSEFSALRAENEKIKLELHQLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEIVALHAQQDRALTQTDRKIETEVAGLKTMLESHKLDNIKYLAGSIFTCLTVALGFYRLWI", "sequence_length": 359, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "81be988640b48e924b2cc8f8142ce0a14cc7760597983780035b1db6df5551d3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96AQ8.json", "taxon_id": "9606", "uniprot_accession": "Q96AQ8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ccdc90-like-pf07798.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07798", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ccdc90-like-pf07798.yaml" } ], "pfam_ids": [ "PF07798" ], "protein_name": "Mitochondrial calcium uniporter regulator 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSGSVAAERPRRTPSRQRLPSSGCGVPARPGVSTLPGGRSWLRPRGRAARASPLLFLLLVPSPRLAATATATAPRRTLAERSRPGLVLPAAALGAGRNALGRLRLGARRVAALASSRRELSLSAKCHQLEHRKENLPLSVSRQLYFDTHALVCLLEANGFTIQQAEIIVSALVKITETNMNIIYKDMVSKMQQEIALQQVLSKIANVKKDMVILEKSEFSALRAENEKIKLELHQLKQQVMDEVTKVRTDTKLNFNLEKSRVKELYSLNEKKMLELRTEIVSLHAQQDRALTQTDRKIETEVAGLKTMLEAHKLDTIKYLAGSVFTCLTVALGFYRLWI", "sequence_length": 340, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "47a968b452b47539a72414e4af0b6e8aa0f27128c4d9c1b643a899d010b6b217", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CXD6.json", "taxon_id": "10090", "uniprot_accession": "Q9CXD6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ccdc90-like-pf07798.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07798", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ccdc90-like-pf07798.yaml" } ], "pfam_ids": [ "PF07798" ], "protein_name": "Coiled-coil domain-containing protein 90B, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSRQAWRLFLSQGRGDRWVSRPRGHFSPALRREFFTTTTKEGYDRRPVDITPLEQRKLTFDTHALVQDLETHGFDKTQAETIVSALTALSNVSLDTIYKEMVTQAQQEITVQQLMAHLDAIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLMHETSRIRADNKLDINLERSRVTDMFTDQEKQLMETTTEFTKKDTQTKSIISETSNKIDAEIASLKTLMESNKLETIRYLAASVFTCLAIALGFYRFWK", "sequence_length": 254, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7b44742f81b36069e14e022e40f314d8b5970eb2d204e840309a43be40b2cb3d", "sequence_version": 2, "source_url": 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"canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/orai-superfamily-ipr038350.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/calcium-release-activated-calcium-channel-protein-orai-1-20-140-140.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.140.140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/calcium-release-activated-calcium-channel-protein-orai-1-20-140-140.yaml" } ], "pfam_ids": [ "PF07856" ], "protein_name": "Calcium release-activated calcium channel protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVWTTANNSGLETPTKSPITSSVPRAARSSAVITTGNHQQHHFQHVVAAAVAAATSVATGHQFQQQFPLHAHPHPQHHSNSPTGSGSNSNNSAGFQRTSISNSLLQFPPPPPPSSQNQAKPRGHHRTASSSMSQSGEDLHSPTYLSWRKLQLSRAKLKASSKTSALLSGFAMVAMVEVQLDHDTNVPPGMLIAFAICTTLLVAVHMLALMISTCILPNIETVCNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILCWVKFYDLSPPAAWSACVVLIPVMIIFMAFAIHFYRSLVSHKYEVTVSGIRELEMLKEQMEQDHLEHHNNIRNNGMNYGASGDIV", "sequence_length": 351, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c6b32e597d28efb9f5a7b1c636853c763b61d6b7b73ee5da2edb34b3869f82f6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9U6B8.json", "taxon_id": "7227", "uniprot_accession": "Q9U6B8", "uniprot_release": "2026_03" } ], "pfam_id": "PF07856", "short_name": "Orai-1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem144-pf07857.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07857", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem144-pf07857.yaml" } ], "pfam_ids": [ "PF07857" ], "protein_name": "Transmembrane protein 144 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSIAVGLSACALSSVLFGSMFVPVKKCHSGNGIFVQWIMSTAILLVGIVVYSTQGFPEFEPLAMLGGMFWALGNATAVPIMNTIGIGMGMLVWGTTNCVAGWAAGRFGLFGINSTVPEYPFLNYFGLVLVVFGGFLFSQIRPNEPQTASERSPLMVAPDDDLTDDVAPDDSDIVVPRGGAVPTRAHRNQKRLLAIITSLVAGVFYGFTFVPVIYIQDHPEIYPTAPKTGLGYVFSHYIGIFCTASALMIGYVIYSRNNPFASSRLVGPSMTAGSMWGIAQASWFVANDNLSQAVSFPIISMVPGVIAALWSVFYFRDISGSRNLRLLSIAVAITLIGAICVGVSK", "sequence_length": 345, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "326b2c398d5f5aa4def7d7ad74bb6a4c6fafd75a7a6194ed5e45055aa8d314e1", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q10000.json", "taxon_id": "6239", "uniprot_accession": "Q10000", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem144-pf07857.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07857", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem144-pf07857.yaml" } ], "pfam_ids": [ "PF07857" ], "protein_name": "Transmembrane protein 144", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNNGADLTFGYISCFVAILLFGSNFVPLKKFDTGDGMFLQWVLCAAIWLVALVVNLILHCPKFWPFAMLGGCIWATGNIAVVPIIKTIGLGLGILIWGSFNALTGWASSRFGWFGLDAEEVSNPLLNYIGAGLSVVSAFIFLFIKSEIPNNTCSMDTTPLITEHVINTTQDPCSWVDKLSTVHHRIVGCSLAVISGVLYGSTFVPIIYIKDHSKRNDSIYAGASQYDLDYVFAHFSGIFLTSTVYFLAYCIAMKNSPKLYPEAVLPGFLSGVLWAIATCCWFIANHSLSAVVSFPIITAGPGFIAAMWGIFMFKEIKGLQNYLLMILAFCIILTGALCTAFSKI", "sequence_length": 345, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6b6c8756883415488d4fe8201f77b2d76f1a75c5c9dc9c994ff71b8302dee043", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Z5S9.json", "taxon_id": "9606", "uniprot_accession": "Q7Z5S9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem144-pf07857.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07857", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem144-pf07857.yaml" } ], "pfam_ids": [ "PF07857" ], "protein_name": "Transmembrane protein 144", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSNATDLTTGYLSSAAAILLFGSNFVPLKKYDTGDGMFLQWVLCAAIWLVALVVNLILHCPKFWPFAMLGGCIWATGNIAVVPIIKTIGLGLGILIWGSFNTLTGWASSRFGWFGMDAEEVSKPMLNYVGAGLSVVSALTFLFIKSEIPNNPGSSDTTPLMTEPVINRTEDRSADSSWVDRLSTTYHRIVGCSLAVISGILYGSTFVPIIYIKDHSRRNDSMYAGASQYDLDYVFAHSSGIFLTSTVYFVAYCVAMKNRPKLYPEAVLPGLLSGVLWAIATCCWFIANHSLSAVISFPIITAGPGLIAALWGILIFKEIQGLRNYLLMMLAFCIILAGALCTAFSKV", "sequence_length": 348, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0f4443ca5388a40cc18483dd020fc8501aaf7b781b5d137df57c82e4d4c1a52d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VEH0.json", "taxon_id": "10090", "uniprot_accession": "Q8VEH0", "uniprot_release": "2026_03" } ], "pfam_id": "PF07857", "short_name": "TMEM144", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07864", "short_name": "DUF1651", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07865", "short_name": "DUF1652", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07866", "short_name": "DUF1653", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07867", "short_name": "DUF1654", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07868", "short_name": "DUF1655", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/p-hydroxybenzoic-acid-efflux-pump-operon-protein-aaex-nf008615.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008615", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/p-hydroxybenzoic-acid-efflux-pump-operon-protein-aaex-nf008615.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1656-pf07869.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07869", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1656-pf07869.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P46478", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07869" ], "protein_name": "Protein AaeX", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a4cd15ace8c2fbfa1993068ec89fa1ca2fa45235178cfd1110832a0d030fa9c5", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFVWHPALFNTALYCCLFYLISRLFV", "sequence_length": 67, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a4cd15ace8c2fbfa1993068ec89fa1ca2fa45235178cfd1110832a0d030fa9c5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P46478.json", "taxon_id": "83333", "uniprot_accession": "P46478", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella boydii serotype 4 (strain Sb227)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1656-pf07869.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07869", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1656-pf07869.yaml" } ], "pfam_ids": [ "PF07869" ], "protein_name": "Protein AaeX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFVWHPALFNTALYCCLFYLISRLFV", "sequence_length": 67, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a4cd15ace8c2fbfa1993068ec89fa1ca2fa45235178cfd1110832a0d030fa9c5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q31WA9.json", "taxon_id": "300268", "uniprot_accession": "Q31WA9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella dysenteriae serotype 1 (strain Sd197)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1656-pf07869.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07869", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1656-pf07869.yaml" } ], "pfam_ids": [ "PF07869" ], "protein_name": "Protein AaeX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFVWHPALFNTALYCCLFYLISRLFV", "sequence_length": 67, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a4cd15ace8c2fbfa1993068ec89fa1ca2fa45235178cfd1110832a0d030fa9c5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q32B97.json", "taxon_id": "300267", "uniprot_accession": "Q32B97", "uniprot_release": "2026_03" } ], "pfam_id": "PF07869", "short_name": "DUF1656", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07870", "short_name": "DUF1657", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07872", "short_name": "DUF1659", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07874", "short_name": "DUF1660", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07877", "short_name": "DUF1661", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07878", "short_name": "RHH_5", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07889", "short_name": "DUF1664", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rrp15p-pf07890.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07890", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rrp15p-pf07890.yaml" } ], "pfam_ids": [ "PF07890" ], "protein_name": "RRP15-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTKNRDRLVVTEDSDDDNEREEMSSGGESGEEGPSSVDGGAGDADETVAFPAIERRKKKVIKKLTKKEQSLKKSVKEYRIKLALVKPDITTDREKERNLRRVATKGVVQLFNAVSDRQKTMSDAVKEKMTARERREARQRFDGKNFDSDRFADSGYVGAKKEVKGEDDDGEDQMDIGEEQIDTGNYSDED", "sequence_length": 191, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2049ab0119e2606e5a7f11ec8681df0386a50459607ba31d8ba9ce83df150ba8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P91318.json", "taxon_id": "6239", "uniprot_accession": "P91318", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rrp15p-pf07890.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07890", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rrp15p-pf07890.yaml" } ], "pfam_ids": [ "PF07890" ], "protein_name": "Ribosomal RNA-processing protein 15", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSKHRVDTKDKKRTRKNAEFGREKRNSGNQELSNEPEKDTIMEGDEAEEDEQNSSSDESSKIIDNEQSDAEEDDDEEEEDDDFPRKKKSKNSKHDDGSTGFSAAVNAILSSHLKAYDRKDPIMARNKKVLKQSESEKLEYKAKKALLAEKKKLLGKARKTDIIPIASGEDRSENIRKVLEKETALRKIAQKGAVKLFNAILATQVKTEKEVSENLSEIKNKEEKKELITEVSKEKFLDLVKAAAGSDNE", "sequence_length": 250, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "debba07daf82e43c62d6d97278a9fb6a48f27936a8341405d84471fc0f34218e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06511.json", "taxon_id": "559292", "uniprot_accession": "Q06511", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rrp15p-pf07890.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07890", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rrp15p-pf07890.yaml" } ], "pfam_ids": [ "PF07890" ], "protein_name": "RRP15-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAVQDSRVSPGEILKRSPKKKKKMKMVAKAAASKLEDEVKDSSDGEGSCDSEMDHSDDGAAEADSEDNVESCEEDNEDAAESSAGTNSGWADAMAKILNKKTPKSKATILTKNKELEKEKEKLKQERLEKRKQLDKKREWEMLCRVKPDVVKDKEAERNLQRIATRGVVQLFNAVQKHQRNVGEKVKEAGGSVRKRAKLMSTVSKKDFISVLRGMDGTSRNSPAGKSPKARQTEVKSEESPGWKILRDDFMMGASMKDWDKESEGEEPAGGRAEAAASR", "sequence_length": 281, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "17d98881d09277af8f4d0b898c659febbd19349f0fde4dc2855e30edee08a3fe", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CYX7.json", "taxon_id": "10090", "uniprot_accession": "Q9CYX7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rrp15p-pf07890.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07890", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rrp15p-pf07890.yaml" } ], "pfam_ids": [ "PF07890" ], "protein_name": "RRP15-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALLTEKRVKKTHAPASDSSPEESDSEGSQNSASEAEGNAGWADSIQKVLKTTKPKTQKKTVLARAKKSQAAVRFQKDAANKKPGFDFEIEKADVKEEDEGDNHEDEKPQASALDATLTKQQRKNVPLQLRVKPSFRDMERERTLRKVATRGVVQFFNAVRIQQKDLQQQLEEAGPLDSRQDAVLNNINKRKFLDVLMSGKRAKSTPVDNAVKKEEQETDDDDEDKGSSGKKKSEWSVLREDFMTNKKIKHWDEEDDDEEGHNDEADDSDYDDGEE", "sequence_length": 276, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8acb2139ea0abf88f5915f70d49c54534cb4ff18d7f65f105b01b2d21d9d64f6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VFE6.json", "taxon_id": "7227", "uniprot_accession": "Q9VFE6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rrp15p-pf07890.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07890", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rrp15p-pf07890.yaml" } ], "pfam_ids": [ "PF07890" ], "protein_name": "RRP15-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAAPDSRVSEEENLKKTPKKKMKMVTGAVASVLEDEATDTSDSEGSCGSEKDHFYSDDDAIEADSEGDAEPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDFISVLRGMDGSTNETASSRKKPKAKQTEVKSEEGPGWTILRDDFMMGASMKDWDKESDGPDDSRPESASDSDT", "sequence_length": 282, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "57a43dd98a244fb5b2aca62441958b59f1f8698c031c437c5ffb427b698fdd8b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y3B9.json", "taxon_id": "9606", "uniprot_accession": "Q9Y3B9", "uniprot_release": "2026_03" } ], "pfam_id": "PF07890", "short_name": "Rrp15p", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07891", "short_name": "DUF1666", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07892", "short_name": "DUF1667", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07893", "short_name": "DUF1668", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 12, "discovery_scanned": true, "example_count": 12, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/n-terminal-phospholipase-d-like-domain-of-the-uncharacterized-protein--cd09187.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09187", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/n-terminal-phospholipase-d-like-domain-of-the-uncharacterized-protein--cd09187.yaml" } ], "pfam_ids": [ "PF07894" ], "protein_name": "Scaffolding CK1 anchoring protein G", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFSQVQCLDDNHVNWRSSESKPEFFYSEEQRLALEALVARGRDAFYEVLKRENIRDFLSELELKRILETIEVYDPGSEDPRGTGPSQGPEDNGVGDGEEASGADGVPIEAEPLPSLEYWPQKSDRSIPQLDLGWPDTIAYRGVTRASVYMQPPIDGQAHIKEVVRKMISQAQKVIAVVMDMFTDVDIFKDLLDAGFKRKVAVYIIVDESNVKYFLHMCERACMHLGHLKNLRVRSSGGTEFFTRSATKFKGALAQKFMFVDGDRAVCGSYSFTWSAARTDRNVISVLSGQVVEMFDRQFQELYLMSHSVSLKGIPMEKEPEPEPIVLPSVVPLVPAGTVAKKLVNPKYALVKAKSVDEIAKISSEKQEAKKPLGLKGPALAEHPGELPELLPPIHPGLLHLERANMFEYLPTWVEPDPEPGSDILGYINIIDPNIWNPQPSQMNRIKIRDTSQASAQHQLWKQSQDSRPRPEPCPPPEPSAPQDGVPAENGLPQGDPEPLPPVPKPRTVPVADVLARDSSDIGWVLELPKEEAPQNGTDHRLPRMAGPGHAPLQRQLSVTQDDPESLGVGLPNGLDGVEEEDDDDYVTLSDQDSHSGSSGRGPGPRRPSVASSVSEEYFEVREHSVPLRRRHSEQVANGPTPPPRRQLSAPHITRGTFVGPQGGSPWAQSRGREEADALKRMQAQRSTDKEAQGQQFHHHRVPASGTRDKDGFPGPPRYRSAADSVQSSTRNAGPAMAGPHHWQAKGGQVPRLLPDPGSPRLAQNARPMTDGRATEEHPSPFGIPYSKLSQSKHLKARTGGSQWASSDSKRRAQAPRDRKDP", "sequence_length": 823, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0dbb889a1b28a93b6eabc4742baeb58fc25e2779a053b7d05b8e4bb2182bd9bb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A6ND36.json", "taxon_id": "9606", "uniprot_accession": "A6ND36", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/phosphatidylinositol-3-kinase-catalytic-subunit-binding-go0036313.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0036313", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/phosphatidylinositol-3-kinase-catalytic-subunit-binding-go0036313.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/n-terminal-phospholipase-d-like-domain-of-the-uncharacterized-protein--cd09182.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09182", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/n-terminal-phospholipase-d-like-domain-of-the-uncharacterized-protein--cd09182.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/scaffolding-anchor-of-ck1-domain-ipr012461.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012461", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/scaffolding-anchor-of-ck1-domain-ipr012461.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sack1-pf07894.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07894", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sack1-pf07894.yaml" } ], "pfam_ids": [ "PF07894" ], "protein_name": "Scaffolding CK1 anchoring protein B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEASSMLSSLNDECRSDNYVEPHYKEWYRVAVDTLIEHGLEAYQEFLIKERVSDFLAEEEINYILKNVQKIAQNTEHGSDSSCDDGSSSGTYWPMQSDVEAPNLDLGWPYVMPGLLGSTHIDLLFHPPRAHLLTIKETIRKMIKEARKVVAIVMDVFTDVDIFKEIVEASTRGISVYILLDESNFSHFLTMTEKQGCQIQRLRNIRIRTVKGQDYLSKTGAKFHGKMEQKFLLVDCQKVMYGSYSYMWSFEKAHLSMVQIITGHLVELFDEEFRTLYARSSVPSSFAQEESVRAKPGKALWENGIYQRSISSLASVSSQRNLFGRQDQIHKLDSSYFKGRGIYPLNDQDKHSMRNHGYKPHFVPNFNGPSTIRHFQPSQLNENWKRHSYAGEQPETTPYLLLNRAMNRTNNAPGRWRRPSDSLSVASSLRGGQGSQQNIPAQSFADRLAQRKTTNLAERNSNVRRSFNGTDNHIRFIQQRMPTLENTTKSFLRSWRIESYLNDNSEVPPDSNGSTLGDRFEGYENPEAVKANALYTHSRLRSSFVFKPTLPEQKEVNSCTTGSSNSTIIGSQGSDTPNEVPDTSTNAPPLTEKPLPEPSSKLPTQQEEPKMHNLQVPEKQPEALNQRTNGRAELNNCIYTNLCVNKQRENTENQQNDNLLKRRSFPSFDHSKVNLEHGNSKNYVYSTLTRNRIRQPEKPKEVVLKSSKSMHNVTHSAEEDDDEVIERDPPSASATKSISIAALLDVNKEEPNKEPNSKKEGKASPSFLKKGSQKLRSLLSLTPEKRESLAKNKAPAFYRMCSSSDTLVSEGEENQKPKKSEPKVDSSPRRKRSSSSNSQGSIHKSKEDIAVSASPGISSQAEESRRIAPSPRPVERRLSERAGDASAPRFNTEQIQYRDSKEISSLMTPARRPTPSPVLKPNELLRSHSTNQRVYSRFEPFCKIESSIQPASSVTNTHVNRPEVKSSTMGTAYGRSSPMLNYKTGAYHSYAPNENKFRGFMQKFGNFIHKNK", "sequence_length": 1012, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cd92f7e947a128029d5d83d27db688aa0b123eec8067aa7c6c50830d57735168", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0VBM2.json", "taxon_id": "10090", "uniprot_accession": "Q0VBM2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-localization-to-cytoskeleton-go0044380.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044380", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-localization-to-cytoskeleton-go0044380.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/n-terminal-phospholipase-d-like-domain-of-the-uncharacterized-protein--cd09188.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09188", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/n-terminal-phospholipase-d-like-domain-of-the-uncharacterized-protein--cd09188.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fam83h-n-terminal-phospholipase-d-like-domain-ipr041996.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041996", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fam83h-n-terminal-phospholipase-d-like-domain-ipr041996.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/scaffolding-anchor-of-ck1-domain-ipr012461.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012461", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/scaffolding-anchor-of-ck1-domain-ipr012461.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sack1-pf07894.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07894", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sack1-pf07894.yaml" } ], "pfam_ids": [ "PF07894" ], "protein_name": "Scaffolding CK1 anchoring protein H", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARRSQSSSQGDNPLAPGYLPPHYKEYYRLAVDALTEGGPEAYNRFLASEGAPDFLCPEELEHVSRHLQPPQYVAREPPEGTPSDVDMDGSSGTYWPVNSDQAVPELDLGWPLTFGFQGTEVTTLVQPPPPDSPSIKDEARRMIRSAQQVVAVVMDMFTDVDLLSEVLEAAARRVPVYILLDEMNAQHFLDMADKCRVNLHHVDFLRVRTVAGPTYYCRTGKSFKGHLKEKFLLVDCAVVMSGSYSFMWSFEKIHRSLAHVFQGELVSSFDEEFRILFAQSEPLVPSAGALARMDAYALAPYSGAGPLVGVPGVGAPTPFSFPKRAHLLFPPPREEGLGFPSFLDPDRHFLSAFRREELQRMPGGALEPHTGLRPLARPTEAGPFGELAGPRGFFQSRHLEMDAFKRHSYATPDGAGAVENFAAARQVSRQTFLSHGDDFRFQTSHFQRDQLYQQHYQWDPQFAPARPQGLFEKLRAGRPGFADPDDFALGAGHRFPELGADVHQRLEYVPSSASREVRHGSDPAFGPSPRGLEPSGASRPNLGQRFPCQATLRQGLDTASEAEPERRGGPEGRAGLRHWRLASYLSGCHGDGGEEGLPMEAEACEDEVLAPGGRDLLPSAFRTPAAFPAKGPKPGSGSGGGDSSEREGPEETSLAKQDSFRSRLNPLIQRSSRLRSSLIFASQAEGAVGTAAATTEKVQLMHKEQTVSETLGPSGEAVRSSASAKVAELLEKYKGPARDPGGAGGAVTSSSHSKAVVSQAWREEVVAPGGAGTERRSLESCLLDLRDSFAQQLHQEAERHPGAASLTAAQLLDTLGGTDRLPSRFLSAQGRSLSPQGRDSPPPEGLGTHQLPYSEPKGNPTPAYPERKGSPTPAYPERKGSPTPAYPERKGSPTPAYPERKGSPTQAYPERKGSPTSGFPNRRGSPTTGLMEQKGSPTSTYPDRRGSPVPPVPERRGSPVPPVPERRGSLTFAGESSKTGPTEEVSSGPMEVLRKGSLRLRQLLSPKNERRGEDEGSFPTPQENGQPESPRRPSLSRGDSTEAAAEERGSRVRLASATANALYSSNLRDDTKAILEQISAHGQKHRGVPAPGPAHSSPDVGRPTTAGDLAPDMSDKDKCSAIFRSDSLGTQGRLSRTLPGSAEERDRLLRRMESMRKEKRVYSRFEVFCKKDEAGSSGAGDNLADEDTRDSKMGKFVPKILGTFKSKK", "sequence_length": 1209, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c97c03b14e374e487fcebda20039cd37aded26f4a180d83c2846ed4a1bfb3300", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q148V8.json", "taxon_id": "10090", "uniprot_accession": "Q148V8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/n-terminal-phospholipase-d-like-domain-of-the-uncharacterized-protein--cd09186.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09186", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/n-terminal-phospholipase-d-like-domain-of-the-uncharacterized-protein--cd09186.yaml" } ], "pfam_ids": [ "PF07894" ], "protein_name": "Scaffolding CK1 anchoring protein F", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAESQLSCLDEAHVNERVTEAHAAFYYCERRRAALEALLGGGEQAYRELVKKERLRDFLSSQERQALCAAWSPYEEAVSSTRAKAKAKAKFPAQPTESLAYWPDRSDTEVPPLDLGWTDTNFYRGVSRVTLFTHPPKEEKAPHLKQVVRQMIQQAQKVIAVVMDLFTDGDIFQDIVDAACKRRVPVYIILDEGGVKYFLEMCQGLELADFRIRNIRVRSVTGIGFYMPMGKIKGTLSSKFLMVDGDKVATGSFSFTWSSSYVDRNLLLLLTGQNMEPFDIEFRELYAISEEVNLHQHLGLAGRIGLNYSSTVARKLINPKYALVAGTRRPPGEMMRWAARQQREAGGNVEGQEEGSGGGESARRLESFLNDLVTVEQILPTVEPISPRLQRPTNGRPVSHAHTDAKHRSREALPQNGKGEAANGEATPAKEGKRFSSRLFSRRVKRPAVPSSMASSPSTETFADVEFPLGKRHNEGSNANISGKGITKASNCVIS", "sequence_length": 495, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": 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"NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5T0W9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07894" ], "protein_name": "Scaffolding CK1 anchoring protein B", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "53a61772010cd03c028d31fc91c8c291e43720f7803880522e43bbacb2bb126e", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "METSSMLSSLNDECKSDNYIEPHYKEWYRVAIDILIEHGLEAYQEFLVQERVSDFLAEEEINYILKNVQKVAQSTAHGTDDSCDDTLSSGTYWPVESDVEAPNLDLGWPYVMPGLLGGTHIDLLFHPPRAHLLTIKETIRKMIKEARKVIALVMDIFTDVDIFKEIVEASTRGVSVYILLDESNFNHFLNMTEKQGCSVQRLRNIRVRTVKGQDYLSKTGAKFHGKMEQKFLLVDCQKVMYGSYSYMWSFEKAHLSMVQIITGQLVESFDEEFRTLYARSCVPSSFAQEESARVKHGKALWENGTYQHSVSSLASVSSQRNLFGRQDKIHKLDSSYFKNRGIYTLNEHDKYNIRSHGYKPHFVPNFNGPNAIRQFQPNQINENWKRHSYAGEQPETVPYLLLNRALNRTNNPPGNWKKPSDSLSVASSSREGYVSHHNTPAQSFANRLAQRKTTNLADRNSNVRRSFNGTDNHIRFLQQRMPTLEHTTKSFLRNWRIESYLNDHSEATPDSNGSALGDRFEGYDNPENLKANALYTHSRLRSSLVFKPTLPEQKEVNSCTTGSSNSTIIGSQGSETPKEVPDTPTNVQHLTDKPLPESIPKLPLQSEAPKMHTLQVPENHSVALNQTTNGHTESNNYIYKTLGVNKQTENLKNQQTENLLKRRSFPLFDNSKANLDPGNSKHYVYSTLTRNRVRQPEKPKEDLLKSSKSMHNVTHNLEEDEEEVTKRNSPSGTTTKSVSIAALLDVNKEESNKELASKKEVKGSPSFLKKGSQKLRSLLSLTPDKKENLSKNKAPAFYRLCSSSDTLVSEGEENQKPKKSDTKVDSSPRRKHSSSSNSQGSIHKSKEDVTVSPSQEINAPPDENKRTPSPGPVESKFLERAGDASAPRFNTEQIQYRDSREINAVVTPERRPTSSPRPTSSELLRSHSTDRRVYSRFEPFCKIESSIQPTSNMPNTSINRPEIKSATMGNSYGRSSPLLNYNTGVYRSYQPNENKFRGFMQKFGNFIHKNK", 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"canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fam83h-n-terminal-phospholipase-d-like-domain-ipr041996.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/scaffolding-anchor-of-ck1-domain-ipr012461.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012461", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/scaffolding-anchor-of-ck1-domain-ipr012461.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sack1-pf07894.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07894", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sack1-pf07894.yaml" } ], "pfam_ids": [ "PF07894" ], "protein_name": "Scaffolding CK1 anchoring protein H", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARRSQSSSQGDNPLAPGYLPPHYKEYYRLAVDALAEGGSEAYSRFLATEGAPDFLCPEELEHVSRHLRPPQYVTREPPEGSLLDVDMDGSSGTYWPVNSDQAVPELDLGWPLTFGFQGTEVTTLVQPPPPDSPSIKDEARRMIRSAQQVVAVVMDMFTDVDLLSEVLEAAARRVPVYILLDEMNAQHFLDMADKCRVNLQHVDFLRVRTVAGPTYYCRTGKSFKGHVKEKFLLVDCAVVMSGSYSFMWSFEKIHRSLAHVFQGELVSSFDEEFRILFAQSEPLVPSAAALARMDAYALAPYAGAGPLVGVPGVGAPTPFSFPKRAHLLFPPPREEGLGFPSFLDPDRHFLSAFRREEPPRMPGGALEPHAGLRPLSRRLEAEAGPAGELAGARGFFQARHLEMDAFKRHSFATEGAGAVENFAAARQVSRQTFLSHGDDFRFQTSHFHRDQLYQQQYQWDPQLTPARPQGLFEKLRGGRAGFADPDDFTLGAGPRFPELGPDGHQRLDYVPSSASREVRHGSDPAFAPGPRGLEPSGAPRPNLTQRFPCQAAARPGPDPAPEAEPERRGGPEGRAGLRRWRLASYLSGCHGEDGGDDGLPAPMEAEAYEDDVLAPGGRAPAGDLLPSAFRVPAAFPTKVPVPGPGSGGNGPEREGPEEPGLAKQDSFRSRLNPLVQRSSRLRSSLIFSTSQAEGAAGAAAATEKVQLLHKEQTVSETLGPGGEAVRSAASTKVAELLEKYKGPARDPGGGAGAITVASHSKAVVSQAWREEVAAPGAVGGERRSLESCLLDLRDSFAQQLHQEAERQPGAASLTAAQLLDTLGRSGSDRLPSRFLSAQSHSTSPQGLDSPLPLEGSGAHQVLHNESKGSPTSAYPERKGSPTPGFSTRRGSPTTGFIEQKGSPTSAYPERRGSPVPPVPERRSSPVPPVPERRGSLTLTISGESPKAGPAEEGPSGPMEVLRKGSLRLRQLLSPKGERRMEDEGGFPVPQENGQPESPRRLSLGQGDSTEAATEERGPRARLSSATANALYSSNLRDDTKAILEQISAHGQKHRAVPAPSPGPTHNSPELGRPPAAGVLAPDMSDKDKCSAIFRSDSLGTQGRLSRTLPASAEERDRLLRRMESMRKEKRVYSRFEVFCKKEEASSPGAGEGPAEEGTRDSKVGKFVPKILGTFKSKK", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/n-terminal-phospholipase-d-like-domain-of-the-uncharacterized-protein--cd09181.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/scaffolding-anchor-of-ck1-domain-ipr012461.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012461", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/scaffolding-anchor-of-ck1-domain-ipr012461.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sack1-pf07894.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07894", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sack1-pf07894.yaml" } ], "pfam_ids": [ "PF07894" ], "protein_name": "Scaffolding CK1 anchoring protein A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRSRHLGKIRKRLEDVKSQWVRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEVDFLSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGLDSSSLQSGTYFPVASEGSEPALLHSWASAEKPYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILEAANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGLKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVSASSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGPPAAVYSNLGAYRPTRLQLEQLGLVPRLTPTWRPFLQASPHF", "sequence_length": 434, "sequence_origin": "UNIPROT_FETCH", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sack1-pf07894.yaml" } ], "pfam_ids": [ "PF07894" ], "protein_name": "Scaffolding CK1 anchoring protein A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRSRHVGKIRKRLEDVKNQWTRPARADFSDNESARLATDALLDGGPEAYWRALSQEGEVDFLSSAEAQYIQAQAKEPPDAPDSAGGAESGPRGLDSCSLQSGTYFPVASEGSEPALLHTWTLAEKPYLKEKSSATIYFQMDKHNNIRDLVRRCISRASQVLAILMDVFTDVEILCDILEAANKRGVFVCVLLDQGGVKLFQEMCDKVQISDIHLKNISIRSVEGEVYCAKSGRKFAGQIQEKFIISDWRFVLSGSYSFSWLCGHVHRNILSKFTGQAVELFDEEFRRLYASSKPLMGLKSPRLVAPFQPNKGPEAPNGRLSGTSDSASDRTSSNPFSSLSTGSNAHNQSLSTSSGPSSPLAPIPPTVPRLQPYHSTRRAVAPQPLLVPMRPHEGAPAPYSSLMAYRPTRLQLQQLGLVPRVTHPWRPFLQALPHF", "sequence_length": 436, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4d216b8c80b2ca7b6d559967f051ebb1cbbb3bc8cb3328c77c569eb13b8d95b9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8K2P2.json", "taxon_id": "10090", "uniprot_accession": "Q8K2P2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/n-terminal-phospholipase-d-like-domain-of-the-uncharacterized-protein--cd09186.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09186", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/n-terminal-phospholipase-d-like-domain-of-the-uncharacterized-protein--cd09186.yaml" } ], "pfam_ids": [ "PF07894" ], "protein_name": "Scaffolding CK1 anchoring protein F", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAESQLNCLDEAHVNEKVTEAQAAFYYCERRRAALEALLGGGEQAYRERLKEEQLRDFLSSPERQALRAAWSPYEDAVPAANARGKSKAKAKAPAPAPAESGESLAYWPDRSDTEVPPLDLGWTDTGFYRGVSRVTLFTHPPKDEKAPHLKQVVRQMIQQAQKVIAVVMDLFTDGDIFQDIVDAACKRRVPVYIILDEAGVKYFLEMCQDLQLTDFRIRNIRVRSVTGVGFYMPMGRIKGTLSSRFLMVDGDKVATGSYRFTWSSSHVDRNLLLLLTGQNVEPFDTEFRELYAISEEVDLYRQLSLAGRVGLHYSSTVARKLINPKYALVSGCRHPPGEMMRWAARQQREAGGNPEGQEEGASGGESAWRLESFLKDLVTVEQVLPPVEPIPLGELSQKDGRMVSHMHRDLKPKSREAPSRNGMGEAARGEAAPARRFSSRLFSRRAKRPAAPNGMASSVSTETSEVEFLTGKRPNENSSADISGKTSPSSAKPSNCVIS", "sequence_length": 500, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "81d9ad1f1ccf1365d7c32442f5fd4f31349ae94fdf5581301df3ae69b779d08a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NEG4.json", "taxon_id": "9606", "uniprot_accession": "Q8NEG4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/n-terminal-phospholipase-d-like-domain-of-the-uncharacterized-protein--cd09183.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09183", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/n-terminal-phospholipase-d-like-domain-of-the-uncharacterized-protein--cd09183.yaml" } ], "pfam_ids": [ "PF07894" ], "protein_name": "Scaffolding CK1 anchoring protein C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFGGPGPGVLGAQGMAGPLRGRVEELKLPWWRESSPLVLRHSEAARLAADALLERGEAAYLRVISEERELPFLSALDVDYMTSHVRGGPELSEAQGQEASGPDRLSLLSEVTSGTYFPMASDIDPPDLDLGWPEVPQATGFSPTQAVVHFQRDKAKNIKDLLRFLFSQAHTVVAVVMDIFTDMELLCDLMEASSRRGVPVYLLLAQEHLRHFLEMCYKMDLNGEHLPNMRVRSTCGDTYCSKAGRRFTGQALEKFVLIDCEQVVAGSYSFTWLCSQAHTSMVLQLRGRIVEDFDREFRCLYAESQPVEGFCGGEDPLSPRALRPPPVALAFRPDVPSPTSSLPSSTSLSSIKQSPLMGRSSYLALPGGGDCSDTGVVSSSLGPARREASGQPSLHRQLSDPNHGSPPGLYRANLGKLGAYPWSQSSPALNHNSTSPLTLAVGSPLLPRSRPLLQFHRGAPALSRFPENGLPGSQEPSPLRGRWVPGTTLETVEEKEKKASPSQSRGQLDLLVPFPRAREVGDPDSGVTPNSGPLRPGEQAPEDRRLSPSQADSQLDLLSRALGTGGAPELGSLRPGDRALEDRRLSLNQSRGQSDLLMQYPKAQGSRVPLETNSSARPARRAPDERRQTLGHSQLDLITKFGPFRGEGPGPNGLPISSPARTAGAGSGDEKRLTLGHSKLDLITKYHQLHGARQGTEPGGPKGGHLNGGNSDLVRDEKRLTLGHSKLDLITKYNKSKFKQLRSRFES", "sequence_length": 747, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b8fc88486b12f43f01daa1b10779c4501307830c32040da93282cef750b1a9a8", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BQN1.json", "taxon_id": "9606", "uniprot_accession": "Q9BQN1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-localization-to-mitotic-spindle-go1902480.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1902480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-localization-to-mitotic-spindle-go1902480.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/scaffolding-anchor-of-ck1-domain-ipr012461.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012461", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/scaffolding-anchor-of-ck1-domain-ipr012461.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sack1-pf07894.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07894", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sack1-pf07894.yaml" } ], "pfam_ids": [ "PF07894" ], "protein_name": "Scaffolding CK1 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"evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/metaphase-chromosome-alignment-go0051310.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051310", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/metaphase-chromosome-alignment-go0051310.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-cell-cycle-g1-s-phase-transition-go1902808.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1902808", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-cell-cycle-g1-s-phase-transition-go1902808.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-localization-to-mitotic-spindle-go1902480.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1902480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-localization-to-mitotic-spindle-go1902480.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/scaffolding-anchor-of-ck1-domain-ipr012461.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012461", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/scaffolding-anchor-of-ck1-domain-ipr012461.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sack1-pf07894.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07894", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sack1-pf07894.yaml" } ], "pfam_ids": [ "PF07894" ], "protein_name": "Scaffolding CK1 anchoring protein D", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALLSEGLDEVPAACLSPCGPPNPTELFSESRRLALEELVAGGPEAFAAFLRRERLARFLNPDEVHAILRAAERPGEEGAAAAAAAEDSFGSSHDCSSGTYFPEQSDLEPPLLELGWPAFYQGAYRGATRVETHFQPRGAGEGGPYGCKDALRQQLRSAREVIAVVMDVFTDIDIFRDLQEICRKQGVAVYILLDQALLSQFLDMCMDLKVHPEQEKLMTVRTITGNIYYARSGTKIIGKVHEKFTLIDGIRVATGSYSFTWTDGKLNSSNLVILSGQVVEHFDLEFRILYAQSKPISPKLLSHFQSSNKFDHLTNRKPQSKELTLGNLLRMRLARLSSTPRKADLDPEMPAEGKAERKPHDCESSTVSEEDYFSSHRDELQSRKAIDAATQTEPGEEMPGLSVSEVGTQTSITTACAGTQTAVITRIASSQTTIWSRSTTTQTDMDENILFPRGTQSTEGSPVSKMSVSRSSSLKSSSSVSSQGSVASSTGSPASIRTTDFHNPGYPKYLGTPHLELYLSDSLRNLNKERQFHFAGIRSRLNHMLAMLSRRTLFTENHLGLHSGNFSRVNLLAVRDVALYPSYQ", "sequence_length": 585, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4233327da7b2326f17b409fb6f95e38d49b7b35bba96a7516baad265ac505ce6", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H4H8.json", "taxon_id": "9606", "uniprot_accession": "Q9H4H8", "uniprot_release": "2026_03" } ], "pfam_id": "PF07894", "short_name": "SACK1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07895", "short_name": "DUF1673", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Candida albicans (strain SC5314 / ATCC MYA-2876)", "origins": [ { "cited_uniprot_accession": "A0A1D8PGP5", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antifungal/fluconazole.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:46081", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antifungal/fluconazole.yaml" } ], "pfam_ids": [ "PF07896" ], "protein_name": "Succinate dehydrogenase assembly factor 4, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MSTMLARIFKQSSTLCPLRVGTSSIRFFSPPSKFDFQPGPPRLPKEQQEEFEKLQSIANSQIAIEEYNDQIAQQQAEGSTQEPKAPIVNSEIGSFSSLKLVPDFEGEVNPKTGERGGPKQEPLKHTKDEWSFNGRVIDF", "sequence_length": 139, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1d35dd525801c76747d3c6dd9363e6d599d17f1009a7cd8eb6f6d107b5274fd2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A1D8PGP5.json", "taxon_id": "237561", "uniprot_accession": "A0A1D8PGP5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mitochondrial-respiratory-chain-complex-ii-assembly-go0034553.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034553", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitochondrial-respiratory-chain-complex-ii-assembly-go0034553.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-succinate-dehydrogenase-activity-go1904231.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1904231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-succinate-dehydrogenase-activity-go1904231.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1674-pf07896.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07896", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1674-pf07896.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P38345", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07896" ], "protein_name": "Succinate dehydrogenase assembly factor 4, mitochondrial", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7f5ed95942b58af9400a9f66f9d240a6d70cb3460b9012e29c84f5d44354e5e9", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLCAIKSTGYRYPRTGALNLLRGRPFNMATRKITTERIPGPPKLPREEQEEFERLQRIATSQEAIDQYNAQATGDRTKESLNSPLLTKNDIGSFSPEFSKTIPEFEGDVNPKTGEVGGPKQDPLRHGDYSFNGRVTDF", "sequence_length": 138, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7f5ed95942b58af9400a9f66f9d240a6d70cb3460b9012e29c84f5d44354e5e9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P38345.json", "taxon_id": "559292", "uniprot_accession": "P38345", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mitochondrial-respiratory-chain-complex-ii-assembly-go0034553.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034553", "section": "canonical_examples", "url": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-90-70-130-3-90-70-130.yaml" } ], "pfam_ids": [ "PF07910", "PF20908" ], "protein_name": "Ufm1-specific protease 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVISESMDILFRIRGGLDLAFQLATPNEIFLKKALKHVLSDLSTKLSSNALVFRICHSSVYIWPSSDINTIPGELTDASACKNILRFIQFEPEEDIKRKFMRKKDKKLSDMHQIVNIDLMLEMSTSLAAVTPIIERESGGHHYVNMTLPVDAVISVAPEETWGKVRKLLVDAIHNQLTDMEKCILKYMKGTSIVVPEPLHFLLPGKKNLVTISYPSGIPDGQLQAYRKELHDLFNLPHDRPYFKRSNAYHFPDEPYKDGYIRNPHTYLNPPNMETGMIYVVQGIYGYHHYMQDRIDDNGWGCAYRSLQTICSWFKHQGYTERSIPTHREIQQALVDAGDKPATFVGSRQWIGSIEVQLVLNQLIGITSKILFVSQGSEIASQGRELANHFQSEGTPVMIGGGVLAHTILGVAWNEITGQIKFLILDPHYTGAEDLQVILEKGWCGWKGPDFWNKDAYYNLCLPQRPNMI", "sequence_length": 469, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "96e0b063f2131577072c43a3066764c0eb2732e1cd805be29a7cda2d9288b965", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NUQ7.json", "taxon_id": "9606", "uniprot_accession": "Q9NUQ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/deufmylase-activity-go0071567.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071567", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/deufmylase-activity-go0071567.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ufsp2-second-domain-ipr049387.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049387", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ufsp2-second-domain-ipr049387.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ufsp2-n-pf20908.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20908", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ufsp2-n-pf20908.yaml" } ], "pfam_ids": [ "PF07910", "PF20908" ], "protein_name": "Probable Ufm1-specific protease", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVPSSETATVRVLCQKLLLSPNHPGTLQWLIGSPFFPPFTVVSTFRCIHHSPDFQQESDDLRKLLPKGFEVIGGLIIGDSDAEKSAFEAVRAARRLRKHLSEGGELDDEKIVGASCDVGTGTIHFFISKSENTTKLEPVGSVVYEDKSGKYLWENGCLLHCELPIKLPFYYPASSPSDSKEKFSDAIDAVITQFKEPYVVYIAETLKKASGGVPKPVVLRGKDLGFGADASNINRLPSADQVSDIKMLSCSHLCLNNKTAPAVNSAENADKIHISVLLNRSEKLPTSGAPVAEYFPAMEEARLIVVDLNLDVLTYAPKDLPLMHAVSNLVIPALVDQLYSLKKIILPHLLVEHPQLRIYHFNPPGVLHPITSMYELNYGETEMKQVDVRKLLHLRLGLPLDRPLLRIANALDLSVNDDSKSNMNRRGSTLLKDVHIGIPSSGVSEGVASIIQGSYEYYHYLQDGFDDSGWGCAYRSLQTIISWFRLQHYTSISVPSHREIQQTLVEIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKIMNFRSGSELPEKCRELAMHFENQGTPIMIGGGVLAYTLLGVDYDEGSGDCAFLILDPHYTGSEDHKKIVNGGWCGWKKAVDSKGKSFFLHNKFYNLLLPQRPNMV", "sequence_length": 645, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9e5a5cd81665491dd2176a5180d23258ee88a50efd59baaa190730c73f997296", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9STL8.json", "taxon_id": "3702", "uniprot_accession": "Q9STL8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/deufmylase-activity-go0071567.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071567", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/deufmylase-activity-go0071567.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ufsp2-n-terminal-mpn-like-domain-ipr058757.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR058757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ufsp2-n-terminal-mpn-like-domain-ipr058757.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ufsp2-second-domain-ipr049387.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049387", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ufsp2-second-domain-ipr049387.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ufsp2-mpn-insect-pf26560.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26560", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ufsp2-mpn-insect-pf26560.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ufsp2-n-pf20908.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20908", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ufsp2-n-pf20908.yaml" } ], "pfam_ids": [ "PF07910", "PF20908", "PF26560" ], "protein_name": "Probable Ufm1-specific protease 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPKLKISAFLLKRLERTKQQCSGCLFGVFYGEGTLLLLSFNIESSLGQLNYEQIQHRFPAELDLCGLVKFGGCTDGEAHLNEVIKSVDITDNPILLQCELGTLVGLRASFFVHGKLEEVPYEVMEAHQLYNDFCFTRLQCGFFLQTAATPESVAREMHVLRKRVADGNLVFNVPQTKIFINNYGPLDKQFSGDSQIQDLIDVIPTPGHEKETASVDKKKLKGQNTPVKRLAPTGCDYEVIPIDVMRSRSRDPVSGEPPHPALSIAVTNEEQIRVQVPLEIEAMAILCRKTKLQRLYDVLIESICRGLRLFELSLIEHLTESGSGKLLVPASYHFYPQEFGHFVSCAYLEGLSDDTPSMLMRRKRLHRQFALPISRPYFRRANQMLFLGETEDAPWTPLLNTHIGLRPSGVVDGKEYLVNGNYHYYHYLQQQVQDKGWGCAYRSLQTICSWFVLQGYTNAPIPTHLEVQEYLHKINDKPAAFVGSSQWIGSTEISMCLQGFLNVDSKILHVASGAELATIASELAMHFQTQGTPVMIGGGVLAHTIIGVDYCVQTGQVKFLILDPHYTGADDLATIQIKGWCGWKGMDFWAKGSYYNLCMPQRPILY", "sequence_length": 607, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c77a2d23c556b12624a9770bc478b62d1c3c731af8b0abd1f3f9e0ab09cbfaf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VUR0.json", "taxon_id": "7227", "uniprot_accession": "Q9VUR0", "uniprot_release": "2026_03" } ], "pfam_id": "PF07910", "short_name": "Peptidase_C78", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07911", "short_name": "DUF1677", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07913", "short_name": "DUF1678", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/chk-kinase-like-ipr015897.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015897", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/chk-kinase-like-ipr015897.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1679-pf07914.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07914", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1679-pf07914.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P41949", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07914" ], "protein_name": "Uncharacterized kinase-like protein D1044.1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6678628c8ae1a6bd11b7247f26a8326cb5befb3ba83f0f7b1c55c14471de38fd", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSEIAEVVPKIIEAIFSSVQEPFKTFNITIKPLENSRSFWSECYQILVTPNSEAHADKVVSPIFVKIPRISAINAACDPDNADENMEILRTLTAQEVTFYSDFSGIQFSGFPIPRSYYGENLGNEKMAGLACEDYSGKVYSIDFVPGFDESQVLQLLEALAHFHAKIIEISDEIPWKNYENVLYDAAYIRMLHNDTLDFEKLCPAELSGRIQEVKHAFDEDGVRNSEKKNEKLGMPLVICHNDLNASNVLWNNETGKIQAFIDFQHVSKGPVSFDIIRILCLGLSVENRRANTQRYLNHYYTTFKSHFSTAPFTFSQLEESYRTHFNFVNATSLFSLSYYYKMYKDESLDLKSGADEREHKAQEILRRTIGILDDM", "sequence_length": 376, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6678628c8ae1a6bd11b7247f26a8326cb5befb3ba83f0f7b1c55c14471de38fd", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P41949.json", "taxon_id": "6239", "uniprot_accession": "P41949", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/chk-kinase-like-ipr015897.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015897", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/chk-kinase-like-ipr015897.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1679-pf07914.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07914", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1679-pf07914.yaml" } ], "pfam_ids": [ "PF00106", "PF07914" ], "protein_name": "Uncharacterized oxidoreductase dhs-27", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESKVVALNRESRRWKKSSFNELLKRARNQKSTICNRFTRKNTPNILVTFTSRLTLLRPTFFNFACWHSAMEIFESMSFSVKFDKELLPIGRHGLTAGWLIESLGQLLNSDNIRNIKCSQLGTDGFVSQIMRVVIEFTNNQTKKYIVKMPETTNIKAALEKTTQQKMPEGADEQFIGGLTMFFNREVEYYAMEKIPGLRTPKCYHAQQWDNGKTTGAIVMQDLEGMVSVPYYESLNLQQIASIGSQMLNLHLFSIGMSDEWRQKFPFPMELIDTVSNMTDIVKLYVSRNPELEEGFSKVEKMYQDRELFTKVLRDSHKSLGIDDFLCHGDLWFYNLMWIPRKSGSEVASNHLGSIIDWQNVHTGNICEDFCHMLTFCCDTEIRRQAENTFLPYYYNQLKAKAVEAGKKLNLTLNQFLRAYRRNFIAHALHLPFIVSIMLCVKPADDEIVQKIRNQMSGALWSAAQFAVTSYVCVRVLKFLYIMCKSVLVHFITPKHDLDYLKDTWTVITGGTDGIGKAYIEELCKTRGLKKFYLIGRNIDKLNNTKKELVEQHGCEVMCHVHDFEKDDLSALPKDLETLDVGILINCAGIAPHIIGTLTELPEGLASKILRVNLMSAVKMTEMILPNMVKKKRGIIVNISSMTGWRRFRTSVLTRLAKLHYPSSPTPCQMNTEELEFVFSVSFQCSLLPRSPRMKLKKRTISSLSPLKTLPNKLSELSGLIGKSQRAVCNMMFRLPLEHCSPFGFSKYFSSLLLCSEFISIVLPLIKRRTRERIIRVFIISRLSIFVHFYHDFFLLNAIFQIKKFSCELNFLESFF", "sequence_length": 816, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "52ebac117dd239286a78240c0d9d55b8777568810b3d2ca0365ba71e8b6a7723", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q11177.json", "taxon_id": "6239", "uniprot_accession": "Q11177", "uniprot_release": "2026_03" } ], "pfam_id": "PF07914", "short_name": "DUF1679", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF07920", "short_name": "DUF1684", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/necap-adaptin-ear-binding-coat-associated-protein-plextrin-homology-ph-cd13228.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/necap-adaptin-ear-binding-coat-associated-protein-plextrin-homology-ph-cd13228.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/necap-phear-domain-ipr012466.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012466", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/necap-phear-domain-ipr012466.yaml" } ], "pfam_ids": [ "PF07933" ], "protein_name": "Uncharacterized protein At1g03900", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFEEEEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDFNVALSDHEKYVRREKEKETGETSESDNHIDIHPAVNHRLKEGETIRINVKPKPTTNGTGMLSAALSGTGKPKPLALAPPPKAAGVTRSPLPPPPNDPVASRIASDGCKESRRNEPLSDLSQLKKNLPSTAGSGSSKSTGAASGWAAF", "sequence_length": 272, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "34acaab6bec705b60c28d8f7a16d2fdcca173f99aefde09a085fa03054fb994c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q681Q7.json", "taxon_id": "3702", "uniprot_accession": "Q681Q7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/necap-phear-domain-ipr012466.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1681-pf07933.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1681-pf07933.yaml" } ], "pfam_ids": [ "PF07933" ], "protein_name": "Adaptin ear-binding coat-associated protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1687-pf07955.yaml" } ], "pfam_ids": [ "PF07955" ], "protein_name": "Putative redox protein fmp46, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFGLTTKRILTLFTKKRQTLVEQKLTEYMIAGEKTDNQMLHFKLQVETATPTLDQLNIMLSNIGKDKSDLLVAGATSIEDALTKYQHDNQLFRRPCLVDWDKGKVSPYSILLQTRDFSKLL", "sequence_length": 121, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea5d260721e4e2f5bb6ab727d69b7b8233baa48223b8987636c162add6d87de8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UTA2.json", "taxon_id": "284812", "uniprot_accession": "Q9UTA2", "uniprot_release": "2026_03" } ], "pfam_id": "PF07955", "short_name": "DUF1687", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1690-pf07956.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07956", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1690-pf07956.yaml" } ], "pfam_ids": [ "PF07956" ], "protein_name": "MICOS complex subunit MIC19", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSNTSKVGAGAEKQQVYTPLTQIDFSQSLVSQLDSSKESDYVTKQNAEKFIEKKVSQRLSNLEVETLKKFEDTLNNSLLSDDDKDAVDGISSSSLNNQIESLNKKLTLFDQLELQKLEKYGGAKGKSDKKTDNGSISIKAKLTECLLANKGKPLNCYEEMEEFKKLVMG", "sequence_length": 170, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "607d40e16337620a31c155066f9390f9e64420b614a700185995581da24985cc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P43594.json", "taxon_id": "559292", "uniprot_accession": "P43594", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1690-pf07956.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07956", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1690-pf07956.yaml" } ], "pfam_ids": [ "PF07956" ], "protein_name": "MICOS complex subunit mic19", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGNQQSQPEFVLRAPTEFSEKFVRHLQESTETDTSRYMDMENYIQKRVQDELKQLQLRQKKAIDAIQEEEWKSNAKTIKDSQGSLDSNLLSAEFRSFQEKLEKQSSINDKELKIKLKEVESIRSDLLKCMSEHPDKSLICHPLAEKFAILASKLHNPKVGSV", "sequence_length": 162, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8f83510c489875ab46df187e36cb295bfe9d0206575fdc3689fa62d871772f93", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P87150.json", "taxon_id": "284812", "uniprot_accession": "P87150", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1690-pf07956.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07956", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1690-pf07956.yaml" } ], "pfam_ids": [ "PF07956" ], "protein_name": "MICOS complex subunit mic19", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGAGSSKPEASAGSKHIFESNSPIQFSSNLVDGLQSNTETDSARAKSLELEIQNRVAKELERLRAREQQTLAEIEKRLSEAKDTGSFASAPSAPAVTHYPAGSLDLDAPRIPFAGREYAPPPPAAVEVAAVNKELNRESVNSEIEELRVKLEGRKKLAELDEGVAKAQKDVVSCLRLNDRRPLDCWKEVAEFKKEVARLEEGFVDRIVG", "sequence_length": 209, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f44011b290c558ec633bbfbefb11829751aa44e82cdd2737ed56da5e9fb989d5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5ASP0.json", "taxon_id": "227321", "uniprot_accession": "Q5ASP0", "uniprot_release": "2026_03" } ], "pfam_id": "PF07956", "short_name": "DUF1690", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3294-pf07957.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07957", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3294-pf07957.yaml" } ], "pfam_ids": [ "PF07957" ], "protein_name": "Uncharacterized protein MRP8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNEIELLQKQVSELQDLVKKQSLIISKTGERVLELQLDKQKHDVTDFDSKFSKSISKKSGSATQFDATDFATNEDLVELVKELQGELNFIEERSIRRLVNSLKKDDDDVIAPLPNADGDIPAISDGVFPKSLKEFKDIPDLKLVRLAKFYERLPPTLKEQEDFENFLEGKVEAFHINETTDEEISKELEKFSKDELDDAFNDVARYLGLSLRRGTEIW", "sequence_length": 219, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fe22a11702aad53182de263bbf284a621c19d28c146a87f2fd5a92486cd15ac4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P35719.json", "taxon_id": "559292", "uniprot_accession": "P35719", "uniprot_release": "2026_03" } ], "pfam_id": "PF07957", "short_name": "DUF3294", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lachancea kluyveri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1688-pf07958.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07958", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1688-pf07958.yaml" } ], "pfam_ids": [ "PF07958" ], "protein_name": "Uracil catabolism protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVDNPVSYFKSISSVRETTKQVFDYVEQNDGQGNHFKMELSKMDDVVDFLCSIIARDYGTDYSSIPPHGRWQHLNCGNVLRVESLIEQWSGAGIDEVEISRKLIDLFVFSVLVDAGAGNTWKYTTTEEGNKAFDRSEGLAVASYYLFVQGALSQDTNDKFKVNGKKLTELTMDEFCQGFQVSDANPLNGTEGRLKLIQNLGVALSTNPAIFGKEGRPGCLVDYLYSKCTKDNGTAVVDLNDVWNALMDGFTSIWPAGRTSIDGEPLGDAWVLDTKAKASGSDAFLDSIVTFHKLTQWLCYSLLVPLENYGYKFTIKNKDMQTGLPEYRNGGLFYDFGVLTLTDGAYKRGLALTQKLGDNSSKIPTFTPEDGAIVEWRCLTIGLLDYLLPLVNKKLDYDLVLPQLIEAGSWKAGREIAAIKRPDTKGPPIELHSDGTVF", "sequence_length": 439, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aa1cf9d771ff3fa5ef07402d2d57c621160bb3666c09b84809e09e36eef72e23", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5H0J3.json", "taxon_id": "4934", "uniprot_accession": "A5H0J3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1688-pf07958.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07958", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1688-pf07958.yaml" } ], "pfam_ids": [ "PF07958" ], "protein_name": "Protein urg3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTETVAKLLSLQDIRYKAQKVLQKAESQSLKSFLYDPSKLPEVADFVVSVIQADFKGKYSTIPPHGRWQHFEVGNVPRLSQLVSKWEKEGVDSLEICKRVLDVTFVSVLLDAGAGDVWKYTDGKEAYGRSEGLAVASLRCFESGLFSSNPDFVYQVDGKALQALTSEKLGAGFQVTEQNPLAGVEGRATILRSLGKQLGSGRPSDFVGRIFPTGDFSKGLNVLELWSELQTLLIPIWPVRTSFEGQNLGDAWYLSTIDAIQPFHKLTQWLTYSLLIPFKSLLKVPVVNEELLTGLPEYRNGGLFVDLGVLTLRPEFSYATEYEPSSVTIVEWRAMTVVLLDKLLAFVNERLKPELSEPLSLAQMLEAGSWKSGRIIAKKLRPSTAGSPILIKSDGTLF", "sequence_length": 399, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "539d9537dc5a0d75ed05234bbf8296308aded78f17ec4a16b4fdd44de6ba2a14", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9US42.json", "taxon_id": "284812", "uniprot_accession": "Q9US42", "uniprot_release": "2026_03" } ], "pfam_id": "PF07958", "short_name": "DUF1688", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-c-terminal-ipr012936.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-c-terminal-ipr012936.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-n-terminal-ipr039542.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-n-terminal-ipr039542.yaml" } ], "pfam_ids": [ "PF07970", "PF13850" ], "protein_name": "ER-derived vesicles protein ERV46", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRSTLLSLDAFAKTEEDVRVRTRAGGLITLSCILTTLFLLVNEWGQFNSVVTRPQLVVDRDRHAKLELNMDVTFPSMPCDLVNLDIMDDSGEMQLDILDAGFTMSRLNSEGRPVGDATELHVGGNGDGTAPVNNDPNYCGPCYGAKDQSQNENLAQEEKVCCQDCDAVRSAYLEAGWAFFDGKNIEQCEREGYVSKINEHLNEGCRIKGSAQINRIQGNLHFAPGKPYQNAYGHFHDTSLYDKTSNLNFNHIINHLSFGKPIQSHSKLLGNDKRHGGAVVATSPLDGRQVFPDRNTHFHQFSYFAKIVPTRYEYLDNVVIETAQFSATFHSRPLAGGRDKDHPNTLHVRGGIPGMFVFFEMSPLKVINKEQHGQTWSGFILNCITSIGGVLAVGTVMDKLFYKAQRSIWGKKSQ", "sequence_length": 415, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5a8e9aac064903e9b07e08f68e9ccf087946a4f7285fb73a8d3f266ffb797d6d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P39727.json", "taxon_id": "559292", "uniprot_accession": "P39727", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-c-terminal-ipr012936.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-c-terminal-ipr012936.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-n-terminal-ipr039542.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-n-terminal-ipr039542.yaml" } ], "pfam_ids": [ "PF07970", "PF13850" ], "protein_name": "ER-derived vesicles protein ERV41", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGLKTFDAFPKTEEQYKKKSTKGGLTSLLTYLFLLFIAWTEFGEYFGGYIDQQYVVDSQVRDTVQINMDIYVNTKCDWLQINVRDQTMDRKLVLEELQLEEMPFFIPYDTKVNDINEIITPELDEILGEAIPAEFREKLDTRSFFDESDPNKAHLPEFNGCHVFGSIPVNRVSGELQITAKSLGYVASRKAPLEELKFNHVINEFSFGDFYPYIDNPLDNTAQFNQDEPLTTYVYYTSVVPTLFKKLGAEVDTNQYSVNDYRYLYKDVAAKGDKMPGIFFKYNFEPLSIVVSDVRLSFIQFLVRLVAICSFLVYCASWIFTLLDMALITIMGPKWSLRYQPDDKTKGILDR", "sequence_length": 352, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fac57a1b7c88909ff39f9986a17008d9412e8c586c0e53b882a6970b1cfe97ed", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q04651.json", "taxon_id": "559292", "uniprot_accession": "Q04651", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-c-terminal-ipr012936.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-c-terminal-ipr012936.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-n-terminal-ipr039542.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-n-terminal-ipr039542.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ergic-n-pf13850.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13850", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ergic-n-pf13850.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/copiicoated-erv-pf07970.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07970", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/copiicoated-erv-pf07970.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q969X5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07970", "PF13850" ], "protein_name": "Endoplasmic reticulum-Golgi intermediate compartment protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e24e21fad94d8bdbf83131d049719a7587fdf9132a133567b3cbf4a573e5e89c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPFDFRRFDIYRKVPKDLTQPTYTGAIISICCCLFILFLFLSELTGFITTEVVNELYVDDPDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEVGHIDNSMKIPLNNGAGCRFEGQFSINKVPGNFHVSTHSATAQPQNPDMTHVIHKLSFGDTLQVQNIHGAFNALGGADRLTSNPLASHDYILKIVPTVYEDKSGKQRYSYQYTVANKEYVAYSHTGRIIPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAWKKIQLGKMH", "sequence_length": 290, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e24e21fad94d8bdbf83131d049719a7587fdf9132a133567b3cbf4a573e5e89c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q969X5.json", "taxon_id": "9606", "uniprot_accession": "Q969X5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-c-terminal-ipr012936.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-c-terminal-ipr012936.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-n-terminal-ipr039542.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-n-terminal-ipr039542.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ergic-n-pf13850.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13850", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ergic-n-pf13850.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/copiicoated-erv-pf07970.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07970", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/copiicoated-erv-pf07970.yaml" } ], "pfam_ids": [ "PF07970", "PF13850" ], "protein_name": "Endoplasmic reticulum-Golgi intermediate compartment protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRLNRKKTLSLVKELDAFPKVPESYVETSASGGTVSLIAFTTMALLTIMEFSVYQDTWMKYEYEVDKDFSSKLRINIDITVAMKCQYVGADVLDLAETMVASADGLVYEPTVFDLSPQQKEWQRMLQLIQSRLQEEHSLQDVIFKSAFKSTSTALPPREDDSSQSPNACRIHGHLYVNKVAGNFHITVGKAIPHPRGHAHLAALVNHESYNFSHRIDHLSFGELVPAIINPLDGTEKIAIDHNQMFQYFITVVPTKLHTYKISADTHQFSVTERERIINHAAGSHGVSGIFMKYDLSSLMVTVTEEHMPFWQFFVRLCGIVGGIFSTTGMLHGIGKFIVEIICCRFRLGSYKPVNSVPFEDGHTDNHLPLLENNTH", "sequence_length": 377, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4eab01008d134d8b4e87ac64021ad4cd474c56062c8977bedbe639861503b79b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96RQ1.json", "taxon_id": "9606", "uniprot_accession": "Q96RQ1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/retrograde-cargo-receptor-complex-golgi-to-er-go0061852.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061852", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/retrograde-cargo-receptor-complex-golgi-to-er-go0061852.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-c-terminal-ipr012936.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-c-terminal-ipr012936.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-n-terminal-ipr039542.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-n-terminal-ipr039542.yaml" } ], "pfam_ids": [ "PF07970", "PF13850" ], "protein_name": "Endoplasmic reticulum-Golgi intermediate compartment protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEALGKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLTTEVHPELYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKKRLDKDGVPVSSEAERHELGKVEVTVFDPNSLDPNRCESCYGAESEDIKCCNSCEDVREAYRRRGWAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLDNINMTHYIKHLSFGEDYPGIVNPLDHTNVTAPQASMMFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGKTT", "sequence_length": 383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "810b8a369303450df3f8233f1ae766290ec10c7006770a098cf489ed68630713", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CQE7.json", "taxon_id": "10090", "uniprot_accession": "Q9CQE7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/retrograde-cargo-receptor-complex-golgi-to-er-go0061852.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061852", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/retrograde-cargo-receptor-complex-golgi-to-er-go0061852.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-c-terminal-ipr012936.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-c-terminal-ipr012936.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-n-terminal-ipr039542.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-n-terminal-ipr039542.yaml" } ], "pfam_ids": [ "PF07970", "PF13850" ], "protein_name": "Endoplasmic reticulum-Golgi intermediate compartment protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRLNRRKTLSLVKELDAFPKVPDSYVETSASGGTVSLIAFTTMALLTIMEFSVYQDTWMKYEYEVDKDFSSKLRINIDITVAMKCHYVGADVLDLAETMVASADGLAYEPALFDLSPQQREWQRMLQLIQSRLQEEHSLQDVIFKSAFKSASTALPPREDDSSLTPDACRIHGHLYVNKVAGNFHITVGKAIPHPRGHAHLAALVNHDSYNFSHRIDHLSFGELVPGIINPLDGTEKIAVDHNQMFQYFITVVPTKLHTYKISADTHQFSVTERERIINHAAGSHGVSGIFMKYDLSSLMVTVTEEHMPFWQFFVRLCGIIGGIFSTTGMLHGIGKFIVEIICCRFRLGSYKPVRSVPFADGHTDNHLPLLENNTH", "sequence_length": 377, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8ed4359cb2b5695fe32bee306e57ad8fad0378891f09c6c07cc575fb6bf0523e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CR89.json", "taxon_id": "10090", "uniprot_accession": "Q9CR89", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-c-terminal-ipr012936.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-c-terminal-ipr012936.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-n-terminal-ipr039542.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-n-terminal-ipr039542.yaml" } ], "pfam_ids": [ "PF07970", "PF13850" ], "protein_name": "Endoplasmic reticulum-Golgi intermediate compartment protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPFDFRRFDIYRKVPKDLTQPTYTGAIISICCCLFILFLFLSELTGFITTEVVNELYVDDPDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEVGHIDNSMKIPLNNGAGCRFEGQFSINKVPGNFHVSTHSATAQPQNPDMTHTIHKLSFGDTLQVQNVHGAFNALGGADRLTSNPLASHDYILKIVPTVYEDKSGKQRYSYQYTVANKEYVAYSHTGRIIPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAWKKIQLGKIH", "sequence_length": 290, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1246859899f8525a80238f02292a62532a35fe9d72899017595c37c7421f873b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DC16.json", "taxon_id": "10090", "uniprot_accession": "Q9DC16", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-c-terminal-ipr012936.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-c-terminal-ipr012936.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-n-terminal-ipr039542.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-vesicle-transporter-n-terminal-ipr039542.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ergic-n-pf13850.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13850", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ergic-n-pf13850.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/copiicoated-erv-pf07970.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07970", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/copiicoated-erv-pf07970.yaml" } ], "pfam_ids": [ "PF07970", "PF13850" ], "protein_name": "Endoplasmic reticulum-Golgi intermediate compartment protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEALGKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLTTEVHPELYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGIPVSSEAERHELGKVEVTVFDPDSLDPDRCESCYGAEAEDIKCCNTCEDVREAYRRRGWAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLDNINMTHYIQHLSFGEDYPGIVNPLDHTNVTAPQASMMFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGKTT", "sequence_length": 383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7d2330e67c04ba6379abe23054903e6a7302c9ee54630a7848f6f1d79b04e8fa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y282.json", "taxon_id": "9606", "uniprot_accession": "Q9Y282", "uniprot_release": "2026_03" } ], "pfam_id": "PF07970", "short_name": "COPIIcoated_ERV", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ntp-transf-7-pf07984.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07984", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ntp-transf-7-pf07984.yaml" } ], "pfam_ids": [ "PF07984" ], "protein_name": "Terminal nucleotidyltransferase 5A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHQRYFWTDQGQVAFGGHYMAEGEGYFAMAEDELTGGPYIPLGGDFGGGGSSFGDRCSDYCESPTAHCNVLNWEQVQRLDGILSETIPIHGRGNFPTLELQPSLIVKVVRRRLEEKGIGVRDVRLNGSAASHVLHQDSGLGYKDLDLIFCADLRGEEEFQTVKDVVLDCLLDFLPEGVNKEKITPLTLKEAYVQKMVKVCNDSDRWSLISLSNNSGKNVELKFVDSLRRQFEFSVDSFQIKLDSLLLFYECSENPMTETFHPTIIGESVYGDFHEAFDHLCNKIIATRNPEEIRGGGLLKYCNLLVRGFRPASEEIKTLQRYMCSRFFIDFSDIGEQQRKLESYLQNHFVGLEDRKYDYLMTLHGVVNESTVCLMGHERRQTLNLITMLAIRVLADQNVIPNVANVTCYYQPAPYVADANFSNYYIAQVQPVFTCQQQTYSTWLPCN", "sequence_length": 447, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e7a7d39618b22f44aee3e34ff91a6f5c505f5fbb10606b10a13df3edac2320de", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/D3Z5S8.json", "taxon_id": "10090", "uniprot_accession": "D3Z5S8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ntp-transf-7-pf07984.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07984", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ntp-transf-7-pf07984.yaml" } ], "pfam_ids": [ "PF07984" ], "protein_name": "Terminal nucleotidyltransferase 5C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEEGSSTKDSESFSVLNWDQVSRLHEVLTEVVPIHGRGNFPTLEITLKDIVQTVRGRLEEAGINVQDVRLNGSAAGHVLVKDNGLGCKDLDLIFHVALPTEAEFQLVRDVVLCSLLNFLPEGVNKLKISPVTLKEAYVQKLVKVCTDTDRWSLISLSNKNGRNVELKFVDSIRRQFEFSVDSFQIILDSLLFFYDCSGNPISEHFHPTVIGESMYGDFEEAFDHLQNRLIATKNPEEIRGGGLLKYSNLLVRDFRPADQEEIKTLERYMCSRFFIDFPDILEQQRKLETYLQNHFSDEERSKYDYLMILRRVVNESTVCLMGHERRQTLNLISLLALRVLAEQNIIPSATNVTCYYQPAPYVSDGNFNNYYIAHPPITYSQPYPTWLPCN", "sequence_length": 391, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d426ca0645f2a90b1a27ff5443020f0d72aefe1b49921726e0b8ac3293746e5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5SSF7.json", "taxon_id": "10090", "uniprot_accession": "Q5SSF7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ntp-transf-7-pf07984.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07984", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ntp-transf-7-pf07984.yaml" } ], "pfam_ids": [ "PF07984" ], "protein_name": "Terminal nucleotidyltransferase 5C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEESSCTRDCMSFSVLNWDQVSRLHEVLTEVVPIHGRGNFPTLEITLKDIVQTVRSRLEEAGIKVHDVRLNGSAAGHVLVKDNGLGCKDLDLIFHVALPTEAEFQLVRDVVLCSLLNFLPEGVNKLKISPVTLKEAYVQKLVKVCTDTDRWSLISLSNKNGKNVELKFVDSIRRQFEFSVDSFQIILDSLLFFYDCSNNPISEHFHPTVIGESMYGDFEEAFDHLQNRLIATKNPEEIRGGGLLKYSNLLVRDFRPTDQEEIKTLERYMCSRFFIDFPDILEQQRKLETYLQNHFAEEERSKYDYLMILRRVVNESTVCLMGHERRQTLNLISLLALRVLAEQNIIPSATNVTCYYQPAPYVSDGNFSNYYVAHPPVTYSQPYPTWLPCN", "sequence_length": 391, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5fcff0c4d9a78dddddc06e881b334ca1eed786cd84e0da57524420eac845f932", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VWP2.json", "taxon_id": "9606", "uniprot_accession": "Q5VWP2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ntp-transf-7-pf07984.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07984", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ntp-transf-7-pf07984.yaml" } ], "pfam_ids": [ "PF07984" ], "protein_name": "Terminal nucleotidyltransferase 5B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMPSESGAESLEQPAAQVGTGAASAVATAGAAGGGPDPEASSASLGRHQSRLSWPQVKRLDALLKEPIPIHGRGNFPTLSVQPQQIVQVVRSSLEEHGLRVHSVRLHGSAASHVLHPESGLGYKDLDLVFQMDLRSEVSFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKVCTDLDRWSLISLSNKSGKNVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEAFHPTVTGESLYGDFAEALEHLQHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRALQRYMCSRFFIDFPDLVEQRRILERYLEAHFGGAEAARRYACLVTLHQVVNESTVCLMSHERRQTLDLIAMLALQALAEQGPAAMAALAWRRPGSDGVVPATVNYYVTPMQPLLPRAHSYPTWLPCN", "sequence_length": 427, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f8bad5c909361756de9fcf0138098ad827cf2f221e64e346f90ada1fbc1d187", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C152.json", "taxon_id": "10090", "uniprot_accession": "Q8C152", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ntp-transf-7-pf07984.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07984", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ntp-transf-7-pf07984.yaml" } ], "pfam_ids": [ "PF07984" ], "protein_name": "Terminal nucleotidyltransferase 5D", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEVKPKDIIHVVKDQLIGQGIIVKDARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQVVKDAVLDCLLDFLPKDVKKEKLSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGKNLELKFVSSLRRQFEFSVDSFQIVLDPMLDFYSDKNAKLTKESYPVVVAESMYGDFQEAMTHLQHKLICTRKPEEIRGGGLLKYCSLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEEQQKKIESYLHNHFIGEGMTKYDYLMTLHGVVNESTVCLMSYERRQILHLITMMALKVLGELNILPNTQKVTCFYQPAPYFAAEARYPIYVIPEPPPVSFQPYHPLHFRGSNGMS", "sequence_length": 389, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "47c5c0f8a597b3d4462472aafdd66558b6668b394a885ed9623669a5db72cc6b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NEK8.json", "taxon_id": "9606", "uniprot_accession": "Q8NEK8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ntp-transf-7-pf07984.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07984", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ntp-transf-7-pf07984.yaml" } ], "pfam_ids": [ "PF07984" ], "protein_name": "Terminal nucleotidyltransferase 5B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMPSESGAERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRLDALLSEPIPIHGRGNFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESGLGYKDLDLVFRVDLRSEASFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKVCTDSDRWSLISLSNKSGKNVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEAFHPTVTGESLYGDFTEALEHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRALQRYMCSRFFIDFPDLVEQRRTLERYLEAHFGGADAARRYACLVTLHRVVNESTVCLMNHERRQTLDLIAALALQALAEQGPAATAALAWRPPGTDGVVPATVNYYVTPVQPLLAHAYPTWLPCN", "sequence_length": 425, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3bb3e235c87a9601bb8d90a10e9baf113788181b21e541d1a638836037180b54", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96A09.json", "taxon_id": "9606", "uniprot_accession": "Q96A09", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ntp-transf-7-pf07984.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07984", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ntp-transf-7-pf07984.yaml" } ], "pfam_ids": [ "PF07984" ], "protein_name": "Terminal nucleotidyltransferase 5A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEGEGYFAMSEDELACSPYIPLGGDFGGGDFGGGDFGGGDFGGGGSFGGHCLDYCESPTAHCNVLNWEQVQRLDGILSETIPIHGRGNFPTLELQPSLIVKVVRRRLAEKRIGVRDVRLNGSAASHVLHQDSGLGYKDLDLIFCADLRGEGEFQTVKDVVLDCLLDFLPEGVNKEKITPLTLKEAYVQKMVKVCNDSDRWSLISLSNNSGKNVELKFVDSLRRQFEFSVDSFQIKLDSLLLFYECSENPMTETFHPTIIGESVYGDFQEAFDHLCNKIIATRNPEEIRGGGLLKYCNLLVRGFRPASDEIKTLQRYMCSRFFIDFSDIGEQQRKLESYLQNHFVGLEDRKYEYLMTLHGVVNESTVCLMGHERRQTLNLITMLAIRVLADQNVIPNVANVTCYYQPAPYVADANFSNYYIAQVQPVFTCQQQTYSTWLPCN", "sequence_length": 442, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "022677d497e66cdd1e44300c6fd4fb061510d938dd27d5335d69ef804c8446b2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96IP4.json", "taxon_id": "9606", "uniprot_accession": "Q96IP4", "uniprot_release": "2026_03" } ], "pfam_id": "PF07984", "short_name": "NTP_transf_7", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/reeler-like-domain-of-ycni-and-similar-proteins-ycni-is-a-copper-respo-cd08545.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd08545", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/reeler-like-domain-of-ycni-and-similar-proteins-ycni-is-a-copper-respo-cd08545.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ynci-copper-binding-domain-ipr012533.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012533", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ynci-copper-binding-domain-ipr012533.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1775-pf07987.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07987", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1775-pf07987.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/ycni-like-superfamily-ipr038507.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038507", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/ycni-like-superfamily-ipr038507.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/uncharacterised-protein-ycni-like-pf07987-duf1775-2-60-40-2230.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.60.40.2230", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/uncharacterised-protein-ycni-like-pf07987-duf1775-2-60-40-2230.yaml" } ], "pfam_ids": [ "PF07987" ], "protein_name": "Copper-binding protein CutI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKKIALTLCPAIVGSLLFFTAPASAHVSVKPAESAAGSWETYTMKVPSEKNLPTTKVVLKMPKDVEFQQYEPIPGWKVSTQKHDDKSVSVTWEATDGGIQEGQFQQFTFVAKNPDKAEEAAWDAYQYYKDGSIVEWTGDEDADTPHSITNITSAKQVTDEHGATKTEDDSENSGSSALDITAMVLSAAAIILSVAALVKKKRA", "sequence_length": 204, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "473c57e6a0ee90cc549909bb119b1137473f818c17b9d2ec10f80d476cd5ba13", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P94431.json", "taxon_id": "224308", "uniprot_accession": "P94431", "uniprot_release": "2026_03" } ], "pfam_id": "PF07987", "short_name": "DUF1775", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1694-pf07997.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF07997", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1694-pf07997.yaml" } ], "pfam_ids": [ "PF07997" ], "protein_name": "Uncharacterized protein YueI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEDKMDLYLQQGMYGPLETKPDERHLFLGSLRERVVLALTKGQVLRSKPYKEAEHELKNSHNVTLLINGELQYQSYSSYIQMASRYGVPFKIVSDLQFHTPLGIVIAADIAVNRELIYIQDDIYNRSVLKS", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "59925e5a4078a992d8d8410ad9333151164f454ea2b27d4948397133e40ef60b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32092.json", "taxon_id": "224308", "uniprot_accession": "O32092", "uniprot_release": "2026_03" } ], "pfam_id": "PF07997", "short_name": "DUF1694", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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], "pfam_ids": [ "PF07998" ], "protein_name": "Archaemetzincin-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQVLRHSEHTLKTALLSKNPVLVSQYEKLDAGEQRLMNEAFQPRSNLFEPITVHSQSDWISSHPEAPQDFEQFFSDRYRKAPCPKKHIIYIQSIGSLGNTRVISEEYIKWLKGYCEAFFYGLKVKFLEPVSVSETKCSFRVNEHTQNLQIHTGHILAFLKKNKPEDAFCIVGITMIDLYPRDSWNFVFGQASLSSGVGIFSFARYGKDFYTSKYEGNVTSLQLTSPTDYSIFDNYYIPEITSVLLLRSCKTLTHEIGHILGLRHCQWLACLMQGSNHLEESDRRPLNVCPICLRKLQSAIGFNIVERYRALVKWIDDESCNESGATPKSSSEHAHLPKPVEAFKDWREWLMRCIALLEK", "sequence_length": 359, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8bfb2dfaa56bea09586c66b91190f8c89c41ddbb5830fc3783501b221e242b20", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q400C8.json", "taxon_id": "10090", "uniprot_accession": "Q400C8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { 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"MDGLQASAGPLRRGRPKRRRKPQPHSGSVLALPLRSRKIRKQLRSVVSRMAALRTQTLPSENSEESRVESTADDLGDALPGGAAVAAVPDAARREPYGHLGPAELLEASPAARSLQTPSARLVPASAPPARLVEVPAAPVRVVETSALLCTAQHLAAVQSSGAPATASGPQVDNTGGEPAWDSPLRRVLAELNRIPSSRRRAARLFEWLIAPMPPDHFYRRLWEREAVLVRRQDHTYYQGLFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRALPAAAWSLYQAGCSLRLLCPQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRVPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRRTAFMEKVRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRERALSVYGLPIRWEAGEPVNVGAQLTTETEVHMLQDGIARLVGEGGHLFLYYTVENSRVYHLEEPKCLEIYPQQADAMELLLGSYPEFVRVGDLPCDSVEDQLSLATTLYDKGLLLTKMPLALN", "sequence_length": 641, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7282a435c2a519d9dca0316e1448ca638d5d4176b3d68b6c08b46e9625019acc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H6W3.json", "taxon_id": "9606", "uniprot_accession": "Q9H6W3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/peptidyl-histidine-dioxygenase-activity-go0036139.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0036139", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/peptidyl-histidine-dioxygenase-activity-go0036139.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/protein-demethylase-activity-go0140457.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140457", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/protein-demethylase-activity-go0140457.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/riox1-no66-like-c-terminal-winged-helix-domain-ipr049043.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049043", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/riox1-no66-like-c-terminal-winged-helix-domain-ipr049043.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/whd-riox1-pf21233.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21233", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/whd-riox1-pf21233.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-90-930-40-3-90-930-40.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.90.930.40", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-90-930-40-3-90-930-40.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/jmjc-domain-containing-ribosomal-oxygenase-rox-dimer-domain-1-10-10-1500.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.10.1500", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/jmjc-domain-containing-ribosomal-oxygenase-rox-dimer-domain-1-10-10-1500.yaml" } ], "pfam_ids": [ "PF08007", "PF21233" ], "protein_name": "Ribosomal oxygenase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDELPNGNGAALLKRGRGRRRRHPQSQPRGASVLALPLRPRKIRRHRKSAAASRVAALRARALRSEDSDSKVAVASVRGKRKRPAELLEASRSAEPRPVSARPRSASATLPSRVEGWAALSRNLGTAAPPPPGSHADEPGRPRASPLQQVLTELNGIPSSRRRAARLFEWLLAPLPPDHFYRRLWEREAVLVRRQDRSYYEGLFSTADLDSMLRYEDVQFGQHLDAARYVDGRRETLNPPGRALPAAAWSLYRAGCSLRLLCPQAFSPTVWQFLAVLQEQFGSMAGSNVYLTPPDSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRDPSEELALTSSPNFSQEDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQRNTWGDFLEAVLPLAVQAAIEENVEFRRGLPRDFMDYMGAQHSDSKDPRRTAFMEKVRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRERALSVHGLPVRWEAGEPVNVGAQLTTETQVHMLQDGVARLVGEGGRLFLYHTVENSRVYHLEEPKCLEIHPQQADAMELLLRSYPEFVRVGDLPCDSVEDQLSLATMLYDKGLLLTKTPLVPS", "sequence_length": 603, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "475fbd0f334733341990a7915bebea0997d97a8bd77ea3db96174ab53a68d889", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JJF3.json", "taxon_id": "10090", "uniprot_accession": "Q9JJF3", "uniprot_release": "2026_03" } ], "pfam_id": "PF08007", "short_name": "JmjC_2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Azotobacter chroococcum mcd 1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/aaa-atpase-like-pf09820.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09820", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/aaa-atpase-like-pf09820.yaml" } ], "pfam_ids": [ "PF08011", "PF09820" ], "protein_name": "Uncharacterized protein in vnfD 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRKKLPIGIQTFAKIREGDDYYYVDKTGFALQLIEQGTHYFLSRPRRFGKSLFLDTLAELFAGNEPLFRGLQVHDRWDWSRRHPVLRISFGGGVIRDAQDLEGKIAELLTINEQALGIACTQRENRARFGELIRQAHAAGGERVVVLVDEYDKPILDNLTRPEIAREIRDGLRNLYSVIKDSDAHVRFAMLSGVSKFSKVSLFSGLNNLDDISVDSRYSALCGYTETDVDAVFAPELPGLDRDEIRAWYNGYNWTGEAVYNPFDLLLLFQKREFRPYWFETGTPTFLVDLLTERRAFTPALEQVMATDALLSAFEVGDISTEALMFQAGYLTIGQVQRIGAQPRYRLRYPNLEVKASLNEALLLRYLPEPASVMRQTGQLYDLLLANDFPGLQTLFTAFFASIPHDWYRNNPIARYEGYYASVFYSHFAALGLDVRLEDATSHGRIDMTVLFNGHVYLFEFKVVELTPAGQALQQLKDKGYADKYRARGEPIHLLGVEFSRDSRSVVGFVVESLG", "sequence_length": 516, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "35a9e48e516b0b37d6eb06ea3fcd1f247f95634a07e3af4b4ded216a6d1fc60e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P24423.json", "taxon_id": "355", "uniprot_accession": "P24423", "uniprot_release": "2026_03" } ], "pfam_id": "PF08011", "short_name": "PDDEXK_9", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08012", "short_name": "DUF1702", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/tubulin-tyrosine-carboxypeptidase-activity-go0106423.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0106423", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/tubulin-tyrosine-carboxypeptidase-activity-go0106423.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/matcap-pf08014.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08014", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/matcap-pf08014.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q68EN5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF08014" ], "protein_name": "Microtubule-associated tyrosine carboxypeptidase 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "07797397234de665a2379dda3a02da99c6693f4a67ec4934dce9b55743d85391", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVLDSGAQAYDQAPPSPPTSPPSLRHRLKPSDRDGPPLYPWSQSLALPLALAVPPALQPQPEQQPFSQMLLGHRGHMRRSESTYSVNSTGRRGRGTLGRPPPGRGRNPGGGTLRPAASLPHIAKTQRDAGHIASKSPCMLVALRPTNMDRERDKFFQSHYTYNPQFEYQEPMPTAVLEKYCEASGQFIHQAVGIIEAVLEKFGTYEHFEAATGGQLLTKCQIWSIVRKYMQKEGCAGEVVVQLSEDLLSQAVMMVENSRPTLAINLTGARQYWLEGMLRHEIGTHYLRGVNNARQPWHNAEGRLRYGLRPANPTEEGLASLHSVLFRKQPFLWRAALLYYTIHRAARMSFRQLFQDLERYVQDADVRWEYCVRAKRGQTDTSLPGCFSKDQVYLDGIVRILRHRQTIDFPLLTSLGKVSYEDVDHLRPHGVLDNTRVPHFMQDLARYRQQLEHIMATNRLDEAELGRLLPD", "sequence_length": 471, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "07797397234de665a2379dda3a02da99c6693f4a67ec4934dce9b55743d85391", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q68EN5.json", "taxon_id": "9606", "uniprot_accession": "Q68EN5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/matcap-pf08014.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08014", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/matcap-pf08014.yaml" } ], "pfam_ids": [ "PF08014" ], "protein_name": "Putative tyrosine carboxypeptidase MATCAP2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLESIRVTEKLHWPEHELAKKFVLNAEEALITDSKRSFSSLSSGILKDTFTTGTSSYNVLLQSKEEKKHRSQKRFSSASSKQHRKPSKSPSSSHSKDPSRMTALVPGTGAGTWYCLDGQSAVFVTSSVPSPVKFTRDISITGSGLALPPKPKSKVKRRNLTRLPKPKQQPQLCRSFERGDDISGKKLCILTAIKPINLEKEKLRFFKSDYTYNPQFEYANPTLPGVLAKHSNASDRFLKQSINIMELTLQKYGSYEKFEQATGGSLLSKTRIWSHVRKYMVKEGCLGEIVVHLTEDLLSRASMTVVNGCPTLTINISTAREHWLEGMLRHEIGTHYFRGINNLQQPWNSWIGRKKHELKPNNPTEEGLASIHSVLFRKDPFLWRAALLYYTVYKASHMSFCELFKDIGKFVKDPNTRWDYCVRAKRGWTDTSEPGCFSKDQVYLDGVLQILRFRESIDFHLLTALGKVSYEDVDRLKELAVTENMRVPHFLHDHSRYMEHLERIMEVNELTDAELKNLI", "sequence_length": 519, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b3e15c8a027ecc8dc03de6476958723a8faf1b6dbf04b226c3973507af51d206", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q7TQE7.json", "taxon_id": "10090", "uniprot_accession": "Q7TQE7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/tubulin-tyrosine-carboxypeptidase-activity-go0106423.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0106423", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/tubulin-tyrosine-carboxypeptidase-activity-go0106423.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/matcap-pf08014.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08014", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/matcap-pf08014.yaml" } ], "pfam_ids": [ "PF08014" ], "protein_name": "Microtubule-associated tyrosine carboxypeptidase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLDSGTQVYEQAPPRPPAGSPSQHHKLKPSNGNGPPLYPWPESLGMPLALAVPSALQQQTMWQTFSKLHLEQSSHMRRSESTYSVNSTGRRGRGKAPIGRGCDPGGTLRPAASLPHIAKIRKDVGSSSSKSPCMLVALRPTNMDQEREKFFQSHYTYNPQFEYQEPMPMSVLEKYQEASAQFMNQAVGIIEAVLEKFGTYENFEAATGGQLLTKCQIWSTVRKYMQKEGCVGEIVVQLSEDLLSQAVMMVENSRPTLAINLTGARQYWLEGMLRHEIGTHYLRGVNNSRQPWHSTEGRLQYGLQPANPTEEGLASLHSVLFRKQPFLWRAALLYYTIHQAAHMSFRQLFQDLAQYVQDEGVRWEYCVRAKRGQTDTSQPGCFSKDQVYLDGILRILRHRHTIDFQLLTSLGKVSYEDVEQLRPYGVLDNTRVPHFMKDLERYRQQLEHIMTTNRLDEAELGRLLPD", "sequence_length": 467, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9399725d0df8f79d98f13fba6b3f255723ab42eb83946958a7732eb762e32ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q810A5.json", "taxon_id": "10090", "uniprot_accession": "Q810A5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/matcap-pf08014.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08014", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/matcap-pf08014.yaml" } ], "pfam_ids": [ "PF08014" ], "protein_name": "Putative tyrosine carboxypeptidase MATCAP2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGCTRKLTHLRKRIHRPRRRTTRRWKRWFKFRKRKGEKRPRPNHKAVARRAKLKFSTSEKLHWPEQELAKKSILNAEDSLIIDNKRSISHLSSGVLKDIFTTGTSSYNVLLQSKEEKKYHSQKQSSSTYSKRCRKPSKSPNTSRSKDPRRMKALVPVTSSGTWYCLERRPAVFVTSSVSSPVKFTHDISVTGNGIVLPPKPKSKVKWCHFSTLPKPKPQLSRSFEKGDDFSGKKFCILTAIKPTNLEKEKLRFFKSDYTYNPQFEYANPALPSVLAKHSHASDRFLKQIVVHLTEDLLSRASMTVVNGCPTLTINVSTAREHWLEGMLRHEIGTHYFRGINNLQQPWNSWTGRKKHELKPNNPTEEGLASIHSVLFRKDPFLWRAALLYYTVYQASQMSFCELFKDIGRFVKDPNTRWDYCVRAKRGWTDTSQPGCFSKDQVYLDGILQILRYRDTIDFHLLTALGKVSYEDVDRLKGLAVTENMRVPHFLQDHGRYMEHLEKIMEVNELTDRELKDLI", "sequence_length": 520, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cb9e8aade428b8f0b6e97c39ce80309be3e2c0e19f3b3217d48192b98d362e09", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NCT3.json", "taxon_id": "9606", "uniprot_accession": "Q8NCT3", "uniprot_release": "2026_03" } ], "pfam_id": "PF08014", "short_name": "MATCAP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/epta-b-n-pf08019.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08019", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/epta-b-n-pf08019.yaml" } ], "pfam_ids": [ "PF00884", "PF08019" ], "protein_name": "Phosphatidylethanolamine transferase Mcr-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/dinb-family-like-domain-1-20-120-450.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q03036", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF08020" ], "protein_name": "Uncharacterized protein IRC4", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "dcff01400bc33293f3261dac4893a8c180776d9adf03cf1b57bfd32bca431768", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MREYTSKKELKEEIEKKYEKYDAEFETISESQKDEKVETVDRTPSENLSYQLGWVNLLLEWEAKEIAGYNVETPAPGYKWNNLGGLYQSFYKKYGIYSIKEQRAKLREAVNEVYKWISTLSDDELFQAGNRKWATTKAMWPVYKWIHINTVAPFTNFRGKIRKWKRLVPEEQRIKRRKI", "sequence_length": 179, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "dcff01400bc33293f3261dac4893a8c180776d9adf03cf1b57bfd32bca431768", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q03036.json", "taxon_id": "559292", "uniprot_accession": "Q03036", "uniprot_release": "2026_03" } ], "pfam_id": "PF08020", "short_name": "DUF1706", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1707-pf08044.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08044", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1707-pf08044.yaml" } ], "pfam_ids": [ "PF08044" ], "protein_name": "Uncharacterized protein Rv0966c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNSAQRDARNSRDESARASDTDRIQIAQLLAYAAEQGRLQLTDYEDRLARAYAATTYQELDRLRADLPGAAIGPRRGGECNPAPSTLLLALLGGFERRGRWNVPKKLTTFTLWGSGVLDLRYADFTSTEVDIRAYSIMGAQTILLPPEVNVEIHGHRVMGGFDRKVVGEGTRGVPTVRIRGFSLWGDVGIKRKPRKPRK", "sequence_length": 200, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0462b5853e6f3b3dfe8783c6a75e54ff241e41a1afb47b53b31869a037d7288b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKM1.json", "taxon_id": "83332", "uniprot_accession": "P9WKM1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1707-pf08044.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08044", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1707-pf08044.yaml" } ], "pfam_ids": [ "PF08044" ], "protein_name": "Uncharacterized protein MT0054", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLIVDPAKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS", "sequence_length": 289, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a557e73e723b61b0679697b8bbd0b71dd14578feda0a7632e4742a9fd0acb96d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM86.json", "taxon_id": "83331", "uniprot_accession": "P9WM86", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1707-pf08044.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08044", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1707-pf08044.yaml" } ], "pfam_ids": [ "PF08044" ], "protein_name": "Uncharacterized protein Rv0048c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS", "sequence_length": 289, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8dbea6e03b4e9af2b60f6a3be0ee1125a3b4bc9705b6f23b0d378e4bf7caa361", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM87.json", "taxon_id": "83332", "uniprot_accession": "P9WM87", "uniprot_release": "2026_03" } ], "pfam_id": "PF08044", "short_name": "DUF1707", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/rhogap-fmsb1-rhogap-gtpase-activator-protein-gap-for-rho-like-small-gt-cd04401.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd04401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/rhogap-fmsb1-rhogap-gtpase-activator-protein-gap-for-rho-like-small-gt-cd04401.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/meiotically-up-regulated-protein-msb1-mug8-domain-ipr012965.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012965", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/meiotically-up-regulated-protein-msb1-mug8-domain-ipr012965.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/msb1-mug8-dom-pf08101.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08101", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/msb1-mug8-dom-pf08101.yaml" } ], "pfam_ids": [ "PF08101" ], "protein_name": "Morphogenesis-related protein MSB1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNDMAKPLPTPPTAEIRKSRSNSPKKAQKTNLSPNKNQNNEKNVPRSNGRTKNEHNSMDDEEFEFFHQFSREKVKGVIHVITAELKEKGPDVEFLMIPFRPEQTNDKLLTLLNQLFPLGNGQPVNEKKQLRIVSKADVWTLFQCLKYIWCRLPNSEIIGWKSYLEFKFREEDKKFPRKSFLEIMPQCLASPNHASIVYDFFDLIISISSNSRVNKMSARKISKMCAIWAFSKQIPNSDIQDYDFESAAMKSFAPNNSIQDGLDQWIPASDAMFHLLLAFLRSFVPQDLESAKLPRTLKSLLFNNQYPPRKSTAYTSETILTIPLVTLKTDVFSRKPWQLLERCNDLLDFSDHDAFEAREDYALLKSLFRKKNTVEGISRKMSQESRRLMKAMSTKHSTFQPGWAPRECIENISHLKECIEVKRLDIDDYFIWTWLSSLSFEQTSEKKKIFGRSIILEFEFDGFKKWVVFQECDITLDYNKKGQLKKKTSAQSPTTEKELPPDDFELEDPPLSKSPTLSQTYKKFQAEVPQQSTVRRDSAPDNQGIYHTVISKNALTKNKHNVNLHSFEHKISKWNPLNNLRKKSGSNSSSSSFEEKSKDAPIREEYHTNKNHKSKKEERVLSQFSTLNPDEYQLPVIETGSSNFKIEIPELMYEHDDDDSDKLKNSQKRATDSAIEELNGMVEEMMINEPDDVKISITEAETFESLTKFDQYKPSNITDDDLQSSHSSAVHSLKLSTNTNDSCADSSKYTADRKLAEPRKISEESKVNDDSSSYYSPNINNLPASRMPSQPTYSNSDSKKAFTNESRLNVLQGAVSPSQQVTPKPYKNAPGDCVSPVQQKYYQNDRRNEMSPASAPVPPSAYSPARSPQFSTNSAGFKQNTINVPVGYNDPAHVLANQPHMTYRDQHNYPSHQQKQRPFQNNIVPPELKSRNQRADASPIPQHMVPVKQGVPNLPSNVPLYQQMERMNPNHQHPVNTYKVTQPPYHNNTTNAYGNSRAGNAHMLDGKWSNNPPQMVPKGVRPNQYPQQHVNRYSPQAQPVVPAEYYNGPPPMRAPPMMSHMVPAQEPIRYTAGANRRSFPQGMQQNAYSVPAQPMGAVNSEFYLPEAPQGNKLHGNINKRQERKKLYDNIRSGNFGI", "sequence_length": 1137, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8289c90bc658304298c0fc56d362fa7430a653bcce719cae231bb8036e7debd8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P21339.json", "taxon_id": "559292", "uniprot_accession": "P21339", "uniprot_release": "2026_03" } ], "pfam_id": "PF08101", "short_name": "Msb1-Mug8_dom", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 11, "discovery_scanned": true, "example_count": 11, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/anillin-pleckstrin-homology-ph-domain-anillin-rhotekin-rtkn-also-calle-cd01263.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd01263", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/anillin-pleckstrin-homology-ph-domain-anillin-rhotekin-rtkn-also-calle-cd01263.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anillin-homology-domain-ipr012966.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012966", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/anillin-homology-domain-ipr012966.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anillin-ph-domain-ipr037840.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR037840", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/anillin-ph-domain-ipr037840.yaml" } ], "pfam_ids": [ "PF00169", "PF08174" ], "protein_name": "Anillin-like protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYRRENINFSHPPQLKSPPPMSSPLDSNRSYRWTSLTAANNSKFADTPVKETPQKPDMSWWSPSRGDTWRLNAPRGRTLDLVAAFDQCSRQDQLDSPRYANLGRYRRNSEPMQDNEKEVVTTNFIDDSMIEDHEEYEEHDIELGTDFYDPHMIRHHRSSERFEQSLGTGQQIETIHISTRLVPQLKRVPNSDYANDGRGDMKEYGSISKKNETPILDGTPKRPSPLTTRNIHKVDINRMDHLMKTENTVAGFITLTPQVSKVTHKSDFSKHFGQEESVRASPMSRRNRRGTQTIVLPSFDSPASVRKSIPSPGLPTKTDIRSPSSLVKSIANDFEKADFGFHRKIDAAEEIAQLRKRADNSTFDENQNMVSDSAEDNVSNDFVPRISHLEMHPSVHMGISGYAKKNHVPYGESNEEVLYSLPIKKQSRNVDREGMDQTDEILLTPRAITMRQSLPFSDIPEERTCDKIDEMFDFVEVPTGDYDDKTTLERTVDGYAEVKSQKSPNKMIRNRLDLSTNTYQEIEFEKDTTPYMQEFEEDGTGYSASSSGPQFTRSPTLVTPHAGQSVAEYRVSDKEGCAKTEKVVVQKMSQPSALATSTPKGTFAWRNKNQSNAADDSFVSSISNFSAADKINDSKRQISKLIETIEKTRKHIQLAEISLIDAKRAQMVVQELASQRVLLICRERLKLQLDEVRRLQALSVVRHPPPPINRHFKSAMVISNIAIHLNKNFNCRGSFAFIVALKCRTEIEATGVVTLLAHYQTRMHVIHFGEHMHFSNLPVDFVIAMEVYMMRVPEYKAPEKTCAAVLAAKFRNLLVPNSAHRRARNNSVLSNRTVLSMPGYQAPDCDFRFCGKLTLDRDSAGDRQFYLDDVTYPLEGTVKLQSHCSSLPEAIDVEYRGFLYLFDERSPNGEAAWDRYWAMLHRGIIFFWKNPIDEKNQKVPLSQIDLTKCTNQSVEETRNGRDHEFHIELLIDQTPSLLEKRRVVLAAESSDHLASWLNAINDTLFVLRS", "sequence_length": 1009, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2e88976cb0a493dee87249e0d0ee9f287647a65e53022abd38b85d4ac012041f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q09994.json", "taxon_id": "6239", "uniprot_accession": "Q09994", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/anillin-pleckstrin-homology-ph-domain-anillin-rhotekin-rtkn-also-calle-cd13249.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13249", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/anillin-pleckstrin-homology-ph-domain-anillin-rhotekin-rtkn-also-calle-cd13249.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/anillin-homology-domain-ipr012966.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012966", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/anillin-homology-domain-ipr012966.yaml" } ], "pfam_ids": [ "PF00169", "PF08174" ], "protein_name": "Rhotekin-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGQLLRGLAAQQDCSIREKIDLEIRMREGIWKLLSLSTKKDQVLHAVKNLMVCSARIQAYTAELQKSKEEIANQTGARLVLDSSSENKEGESCRGKIALSDIRIPLMWKDSDHFSNKECTQRFAIFCLFRMGAQVFDTDMVIVDQTVTDICFENVTIFNEAGPDFQIKIEVYSCSAEESSLTNTPRKLAKKLKTSISKATGRKISAALQEESPEACLLAGSVAGAKYHLLAHTTLTLENAGDCFKTHNLSVHGDEECSFWLPLYGNVCCRLVAQPACMAADAFAGFLNEQQTGKGLVGWRRLYCALRGGKLRCFYGPEEIEAKVEPALVVPIDKETRIQAVEKDSKKMHCFSVLSTAAGRAVSHIFAADSLADFQEWMGAFRQHFFDLSQWKHCCEELMRIEIMSPRKPPLFLAKEATSVYYDMSIDSPVKLESVTDIIQKKIGETNRQFLIGRDDQSAAPPWAAVFDGNHEMVIEKKVLSPIGEPAPDGKRKKRRAPLPPTDQPPFCIKTQGRANQSKDSATQAGVSGASSSPSDPRLSPPTHHLQKPVAAPRKLLPARKNSSADIGHTDTKTSLDAKPVPVPRQKSIRDILDPRSWLQAQV", "sequence_length": 604, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6378fc3cacf2bcc73533c87797f7d348ffc30a1321ad088ee8d5c260ca9bc97b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q14B46.json", "taxon_id": "10090", "uniprot_accession": "Q14B46", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Xenopus 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], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dash-hsk3-pf08227.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08227", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dash-hsk3-pf08227.yaml" } ], "pfam_ids": [ "PF08227" ], "protein_name": "Golgin-45", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKMTTLKSSENKGILTSTPIRGAGDGMETEEPPKSVEVTHGVQPINQHVLPSPRKKVSSDSPGVLQLGKILNERTVEVEAVRIFVPKAAITHDIPTKNTKVKSLGHHREELHNQAEVVTDPRKELSEVKKVLEKLKNSERRLLQDKEGLSNQLRVQTEINRELKKLLVASVGDDPQYHFERLAREKNQLILENEALGRNTAQLSEQLERMSIQCDVWRSKFLASRVMADELTNFRVVLQRQNRDAQSAIQDLLSEREQFRQEMTSTQKFLEELLVSLQWGREQTYSPNTQPHSTADLALTNHGLAQAIHAHLLGNVGISHQKKIPTTVEFCSTPAEKMAEKVLRILDPVACTESSPDNQFAESSPTTLLTTKKNIGRFHPYTRYENITFNCCNHCQGELIAL", "sequence_length": 403, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "254c6950e8fa8957ed0663ca3106026f06116df3b322ddb783fe2d496950c8d3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R2X8.json", "taxon_id": "10090", "uniprot_accession": "Q8R2X8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dash-hsk3-pf08227.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08227", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dash-hsk3-pf08227.yaml" } ], "pfam_ids": [ "PF08227" ], "protein_name": "Golgin-45", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTKNLETKVTVTSSPIRGAGDGMETEEPPKSVEVTSGVQSRKHHSLQSPWKKAVPSESPGVLQLGKMLTEKAMEVKAVRILVPKAAITHDIPNKNTKVKSLGHHKGEFLGQSEGVIEPNKELSEVKNVLEKLKNSERRLLQDKEGLSNQLRVQTEVNRELKKLLVASVGDDLQYHFERLAREKNQLILENEALGRNTAQLSEQLERMSIQCDVWRSKFLASRVMADELTNSRAALQRQNRDAHGAIQDLLSEREQFRQEMIATQKLLEELLVSLQWGREQTYSPSVQPHSTAELALTNHKLAKAVNSHLLGNVGINNQKKIPSTVEFCSTPAEKMAETVLRILDPVTCKESSPDNPFFESSPTTLLATKKNIGRFHPYTRYENITFNCCNHCRGELIAL", "sequence_length": 400, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "73c2d6436ad3fc958a3134e6c27d14dfbfd7fafc3108ba9e33354071bfdee55a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H2G9.json", "taxon_id": "9606", "uniprot_accession": "Q9H2G9", "uniprot_release": "2026_03" } ], "pfam_id": "PF08227", "short_name": "DASH_Hsk3", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/epoxyqueuosine-reductase-activity-go0052693.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0052693", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/epoxyqueuosine-reductase-activity-go0052693.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/trna-epoxyqueuosine-34-reductase-queg-tigr00276.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00276", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/trna-epoxyqueuosine-34-reductase-queg-tigr00276.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/epoxyqueuosine-reductase-queg-cbl-binding-domain-ipr013542.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/epoxyqueuosine-reductase-queg-cbl-binding-domain-ipr013542.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/queg-duf1730-pf08331.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08331", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/queg-duf1730-pf08331.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P39288", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF08331", "PF13484" ], "protein_name": "Epoxyqueuosine reductase", 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"MRKKVDERIRTLIENGVKLRHRSMFVIIGDKARDQIVNLHHILSKSVVKSNPSVLWCYKNRLDISSHNKKRAKQLKKMKERGQLDPEKLDAFSLFLDVVDVTHCLYKDSERILGNTFGICILQDFEALTPNLLARTIETVEGGGLVVLLLQSLASLTSLCTMVMDVHDRFRTESHSEASGRFNERFLLSLASCKACVVMDDELNLLPLSSHIKSITKVPTKEDSEALSEAERDLKSLKDALNDDFPVGPLINKCCTLDQGKAVVTFFDAILDKTLRSIVALIASRGRGKSAALGLAVAGAVAAGYSNIYVTAPSPDNLKTVFEFVCKGFDALEYKEHLEYDVVRSVNPEFNKAIVRINIFKQHRQTIQYIQPHEHEKLSQVELLVIDEAAAIPLPVVKSLLGPYLVFLSSTVSGYEGTGRSLSLKLLQQLEEQSRAPVTGVEGSLSGCLFKKIELSESIRYASGDPIESWLNGLLCLDVANCLPNPACHPLPSQCDLYYVNRDTLFSYHKDSELFLQRMMALCVSSHYKNSPNDLQLLSDAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRKSAEKSLREGHSPHGDQIPWKFCEQFRDVVFPKLSGARIVRIAVHPNAMKMGYGSAAVELLTRYFEGQLASISEGDDELEVEPSPVRVTEAAAKVSLLEEQIKPRANLPPLLVPLRDRRPERLHYIGVSFGLTLDLFRFWRKHKFAPFYISQIPSAVTGEHTCMLLKPLTLSNDEFEVDESDELGFFAPFYKDFRIRFSKLLSDKFKKMDYKLAMSVLNPKINFPEVDLTGNSPDGFLKKLDGVLSPYDMERFRAYTANLVDFNLVYDICKTLAHHYFQEKLPVSLSYVQASVLLCLGLQESDFSSIERQMQLERGQIYSLLLKVGKKLYKYLNGIATKELESTLPRLKDRVLEPHKVSVDEDLREGAKEVEEQMRARIEELLDPELLDQFAIGDKEAEALQKSKISSSGLISIESTKTDNKKEKPSGFDKSAKKRGNDKHSSTSNKKRRA", "sequence_length": 1028, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "63f77900c26ed678be4272ffb7aea04da91c342e392f6d41ffa44425b60f076b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9XIK4.json", "taxon_id": "3702", "uniprot_accession": "Q9XIK4", "uniprot_release": "2026_03" } ], "pfam_id": "PF08351", "short_name": "TmcA_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08353", "short_name": "MurT_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Monascus ruber", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fas-n-pf17828.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17828", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fas-n-pf17828.yaml" } ], "pfam_ids": [ "PF00698", "PF01575", "PF08354", "PF13452", "PF16073", "PF17828", "PF17951", "PF22235" ], "protein_name": "Fatty acid synthase beta subunit pigK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEASDQSQAKLTLSFGGIQHAFSVPIEDLSALQDQKDAFLRSRSQASLSETREPCSPAELMLDYLEFLSCRNLPPPLTKPVLLAFSRNFLHNTEIHSLLAKPEYTPQTRRRLVRTYYMAALSAAESHVKESALLDAARQGNFQLAAVFGGQSTANPACVRELAELFAAYTPFLGDLISTAAPTLSALCRLPETKEHFCGRHIDIETWLHDPASIPDGDFIATAPVSCPVVGLLNLAHYAVTCHVLGKTPGELRSHLQGVTGHSQGIVAAVAISLSDSWESFYEAARMTVETLFWIGFECHQRSPRTSVSLDQVQDSLQNGHGRPSCMLSIVGLSRAHIQDILLKLNRSLPEDEQVYLALDNARDSFVVAGPSCSLVHLHTYLRSLKADASIDQTRIPHSLRKPTVQHQFLPISVPFHTPYLQEAARAIKERLFPWRVVSGKLTIPVYDNRTGNDLRKSDNVNLIHTMVDSICWEPCSWPAALGIENISHIVAFGSGGVGELAMRLKDGQGVRVIIGSEFQSRDEEIGTKADLFSPTLLASSTIVGSWGERFRPRLSKSPTGEVKIETKLSRLLDTPPLMVAGMTPTTAAWDFVSAITNAGYHVELAGGGYYDMDAMAVAVKKLVASIPPGRGITCNVIYASPQTLSGQVTLLRRLSSQGLPIDGLTIGAGIPSLEVVSEYIQALGLRHISLKPGSITAIREVIEIAKAHPDFPIILQWTGGRGGGHHSFEDFHAPILRTYGALRRCSNIILVAGSGFGGSEDTYPYLSGTWSAQYGLPAMPFDGILLGSRIMVAKEAHTSPAAKRLITEASGVSDSDWEKTYQEATGGVITVVSEMGQPIHKIATRGVLFWAEMDKTIFSLPRTKRVPELLKRRDYIIKRLNADFAKPWFGQNSKGEPVDLSEMTYIEVLRRLVALMYVSHQSRWIDPSYMTLLMDVSVRILERFSIVDELDDALVLREPHRFVENIVRLCPPAAHDILSPEDVAWFLLRCKARGQKPVNFIPALDDDFETFFKKDSLWQSEDVDALIDQDAGRCCILHGPVAAQYSQDRDEPAKEILDGITQSWIDMIRHDFYPGGVTPSSDSGSLSSESWSVLTPDLTSRDESALLDIIPEMQAYCPSISSLGRSGSPWIHALLSDEFILQGRDRRPNPCRRVFHFGPGGSLQFDRAKSEITVSMENHAGNRSVMRIVCENGADISVDLQQPSAYTDEMVSLPLKFQYDPGMVPVGISEVMEGRNERIKSFYSKVWFGEDICRGMNARSVFHGSEMALTEAMHRDLLSTVSLAYPHSETALSGVDVFPISVGMFPVWDAMARPLVVNDIDGDLLRLVHESNTFEYCEASTPLRVGDVVSSTAAVRAVYIEDAGKHVVVEASIERSGKPVMKVVSTFLFKGVFNDWNSTFKTNKEPELVLDVQSDLDELVLRDREWLLLHDPSQSLVGCSLLFRLETQVTWKNRNTYRSLDVSGLVFLQQASDDLKEIGAVAFHAGECVGNPVLSFLQRKGSPATSPTPLTSPGWPGVSSLEVQLPTSNEMYTRTSRDYNPIHVSPLFSQWADLPGTITQGMYTSAISAAVLEHLALNGDRRRFRRFSARFTDMVLPGDRLLVNVKHVGSIQGRMLFNVSAFKQATNNMVLEAEAELEQPPTAFFFTGQGSQKPNMGMDLYNSSPVAKAIWDEADKYIFETYGWSILDIVKNNPKTLTIHFRGKHGRKIRANYLSMENKTVTPDGQIVKKPILPGLTDQTQSYTFTEPSGLLFFSTFAQPSIVVMEKATFEDMRSKGLIPQSAVFAGHSLGEYGALLAFSGFMSVRNLVDLVFYRGLSMQFAMERDERGETNFGMVAASPQRVGKSDAVFTESHLRSLVQMISIASHELLEMVNLNIENEQYVCAGTDTETQLLLEEMSTTEDRTTTKLYKLILKSIPATKKLPMPIRLQRGRCTIPIPGIDVPFHSSYLRSTVSSYRKILQQYISEEDVHLERLVGRWIPNVTAKPFMADEGYVREVFNITQSPILKEMLEL", "sequence_length": 2014, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bfd688a64b280c1939846dbdf71dd55773c1e8a3170d00a6881ceb70513648a9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A1C8AX29.json", "taxon_id": "89489", "uniprot_accession": "A0A1C8AX29", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dothistroma septosporum (strain NZE10 / CBS 128990)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fas-meander-pf17951.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fas-meander-pf17951.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fas1-aflb-like-hel-pf08354.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fas1-aflb-like-hel-pf08354.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fas1-dh-region-pf13452.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13452", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fas1-dh-region-pf13452.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fas1-thioest-ins-pf22235.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22235", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fas1-thioest-ins-pf22235.yaml" } ], "pfam_ids": [ "PF00698", "PF01575", "PF08354", "PF13452", "PF16073", "PF17951", "PF22235" ], "protein_name": "Fatty acid synthase beta subunit hexB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSQHQSQHNSALIQAARDGEATLSVAFGGQGPSNLNCFNDLLELNKTYGSTLRPLIHTADATLSELASLPHRSGFHEDEGFETLDWLQDPKQAPSREYLALSPMSFPINTLLSLCNYCVTLRALRLDPGQFRSSLHNVVGHSQGIFAAAAIAKADSWESFLEAAEIALKISFWVGLESHTAAPPSHISAAAVQDCVEHGEGQPSSMLGITGLNRAQVEMLVERVNKSLSDDDRHVCLALANSRDKYTIAGPPHSLRAVCVQIREIRAADGVDQSRILFNKRKQEVDALFLPISAPYHSQYLKQVSNNVLDALDVDLVGSELGIPLLHTQSGQNLQDWKSKSIIKAIVCAVTTDMVEWPDVCQRLGSSYILGFGPGNIGNLIHESTEGTGVRVIQMNDRSPGSRGIGARAELFSEEMPPQALDWKQTFGPRLVLDHRGDVQIQTRMTQLLNAPPVMVAGMTPTTVTWDFVSCVMQAGYHVELAGGGYSSEARFEEALRRLAASIPIYRGITCNLLYANPQTIAWQVAVLRRLIKEGISIEGVTIGAGVPSPDVIKEYIAIGLKHISFKPGSIAAIDEVIEIAQAHPQFPIGLQWTGGRAGGHHSHEDLHLPILKTYARIRRCSNIVLIAGSGFGGGSDTYPYISGDWSKSLSYPPMPFDGILLGSRVMVAKEAHTSPQAKQLIVQTEGVGDNDWHTSFETPTGGVITITSEHGQPIHMLATRGVMLWKEFDKRIFSIKDAAKRLSYIRAHREEIITRLNKDYQKPWFGVNGDGQNVDLDRMTYREVLGRMCQLMSRGDNGWTDPSWLAMVKDFVEIAGERFGCQVDAHATKAPEVRTAFEATLGGSVDETLYPEDVALVLELLRRRGRKPPPFVPALDENFETWCKKDSLWQSEDVDSLVGKDVQRACIIQGPVAVRHSTIHDEPVQDILDNICNFHIESLLQSGETPGVARKQDLGRPNSIKKSVPGVQITTEKTTIRYQVHKTDKLPPEMDTLIEHIVGPAADCWTHHCLKDEWVFRDQARLRNPIRAAFLRQIQPGEVIEVRLSRDGNTQAIALKTALFGKSSLQTVLRIASTDGKSIKVALTPPSFLSDKPLGLQFAYQLSRKSRGSKLVEVTPNRLDAIKGFYAQLWVDSNQDVKEAGLNSEFWGEPTTLLAQDVQNYTAVVSRSTSPQLQAWNPTGSVPVDYCIVLAWTALTKPLTIPALQCDLLNLLHRSVNFKYAANARPLRLGDVTQTVSRITSLTIQPTGKLVEVSAELRRNDETVVTITTEFFIVGQFEDYETQFKSFEEPLFEVRVHSVTRQALLQSRKWLVLDDPSMDLAGLTLAFKLNTHTTFDHEGKVGALQVTGSVSRVESTGFDTRIGKVYFKKDSCNGNPVVDFLNRHGYPRVTRQPLENPGWNEGSTVLMKAPAKSNQYAMASKDTNPLHVCGVFARYAGLPDTVVHGMHTSAIVRRAVEWAVGDSDRSRFKKWQVSFEGMVRPNDRLKIQLQHTAMEHGRMIMKVQAFNDETGDKVIEAEAEVEQPRTGYVFCGQGSQEKGMGMSLYNARPEAKALWDRGDQFLREQYGFSLLSLVRENPTTLTINFGGRRGKRIRDNYLAMTKKTSLKADAKDVCIVQGLTPTSTSHTFSETKGLLFSTQFSQPAIALMEMVEHEHLFAKGVVQPSALFAGHSLGEYAALGACTTFMPFESLLTLIFYRGLKMQNALERDANGRTDYSMMAADPSRVGKAGFDERAFQCLVELVNEETGLLMEIVNHNVRSQQYVCAGHFRALWILGKVCDDLAKHPKIHLLSMQDLKDMVTTHVPAAGKLTNDIVLTRGKATIPLNGIDIPFHSTMLRGEIEHFRRYLLTKVNVPDIKPNELVGKWIPNVVGRPFSLDRSYIEHVQSVTGSEPLQKMLKAMA", "sequence_length": 1904, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c5d00d666c0253c8ff0f1805a908effde7f4ffe9bd62c695ae9953fe73a2384b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/M2XHU6.json", "taxon_id": "675120", "uniprot_accession": "M2XHU6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fas-meander-pf17951.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fas-meander-pf17951.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fas-n-pf17828.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17828", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fas-n-pf17828.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fas1-aflb-like-hel-pf08354.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF08354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fas1-aflb-like-hel-pf08354.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fas1-dh-region-pf13452.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13452", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fas1-dh-region-pf13452.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fas1-thioest-ins-pf22235.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22235", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fas1-thioest-ins-pf22235.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P07149", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00698", "PF01575", "PF08354", "PF13452", "PF16073", "PF17828", "PF17951", "PF22235" ], "protein_name": "Fatty acid synthase subunit beta", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "14b091cbb7b47647f1622e43f0ec8874fff5776fdd630da5164b6aa2cd0e643a", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQEIFDVTSNGLKKNPNWLEEYHPKLIKNKSGKIFVETKFSKLIGRPPLLVPGMTPCTVSPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDSVVSQIEKGSTFGINLIYVNPFMLQWGIPLIKELRSKGYPIQFLTIGAGVPSLEVASEYIETLGLKYLGLKPGSIDAISQVINIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRHPNIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIAKEVKTSPDAKKCIAACTGVPDDKWEQTYKKPTGGIVTVRSEMGEPIHKIATRGVMLWKEFDETIFNLPKNKLVPTLEAKRDYIISRLNADFQKPWFATVNGQARDLATMTYEEVAKRLVELMFIRSTNSWFDVTWRTFTGDFLRRVEERFTKSKTLSLIQSYSLLDKPDEAIEKVFNAYPAAREQFLNAQDIDHFLSMCQNPMQKPVPFVPVLDRRFEIFFKKDSLWQSEHLEAVVDQDVQRTCILHGPVAAQFTKVIDEPIKSIMDGIHDGHIKKLLHQYYGDDESKIPAVEYFGGESPVDVQSQVDSSSVSEDSAVFKATSSTDEESWFKALAGSEINWRHASFLCSFITQDKMFVSNPIRKVFKPSQGMVVEISNGNTSSKTVVTLSEPVQGELKPTVILKLLKENIIQMEMIENRTMDGKPVSLPLLYNFNPDNGFAPISEVMEDRNQRIKEMYWKLWIDEPFNLDFDPRDVIKGKDFEITAKEVYDFTHAVGNNCEDFVSRPDRTMLAPMDFAIVVGWRAIIKAIFPNTVDGDLLKLVHLSNGYKMIPGAKPLQVGDVVSTTAVIESVVNQPTGKIVDVVGTLSRNGKPVMEVTSSFFYRGNYTDFENTFQKTVEPVYQMHIKTSKDIAVLRSKEWFQLDDEDFDLLNKTLTFETETEVTFKNANIFSSVKCFGPIKVELPTKETVEIGIVDYEAGASHGNPVVDFLKRNGSTLEQKVNLENPIPIAVLDSYTPSTNEPYARVSGDLNPIHVSRHFASYANLPGTITHGMFSSASVRALIENWAADSVSSRVRGYTCQFVDMVLPNTALKTSIQHVGMINGRKLIKFETRNEDDVVVLTGEAEIEQPVTTFVFTGQGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLFEIIDEASKKSAVKPRPLKLERGFACIPLVGISVPFHSTYLMNGVKPFKSFLKKNIIKENVKVARLAGKYIPNLTAKPFQVTKEYFQDVYDLTGSEPIKEIIDNWEKYEQS", "sequence_length": 2051, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "14b091cbb7b47647f1622e43f0ec8874fff5776fdd630da5164b6aa2cd0e643a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P07149.json", "taxon_id": "559292", "uniprot_accession": "P07149", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Candida albicans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fas-n-pf17828.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17828", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fas-n-pf17828.yaml" } ], "pfam_ids": [ "PF00698", "PF01575", "PF08354", "PF13452", "PF16073", "PF17828", "PF17951", "PF22235" ], "protein_name": "Fatty acid synthase subunit beta", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTHRPFQLTHGSIEHTLLVPNDLFFNYSQLKDEFIKTLPEPTEGFAGDDEPSSPAELYGKFIGFISNAQFPQIVELSLKDFESRFLDNNNDNIHSFAVKLLDDETYPTTIAKVKENIVKNYYKAVKSINKVESNLLYHCKHDAKLVAIFGGQGNTDDYFEELRELYTLYQGLIEDLLVSIAEKLNQLHPSFDKIYTQGLNILSWLKHPETTPDQDYLLSVPVSCPVICVIQLCHYTITCKVLGLTPGEFRNSLKWSTGHSQGLVTAVTIAASDSWDSFLKNSLTAVSLLLFIGSRCLSTYPRTSLPPTMLQDSLDNGEGRPSPMLSVRDLSIKQVEKFIEQTNSHLPREKHIAISLINGARNLVLSGPPESLYGFNLNLRNQKAPMGLDQSRVPFSERKLKCSNRFLPIFAPFHSHLLADATELILDDVKEHGLSFEGLKIPVYDTFDGSDFQALKEPIIDRVVKLITELPVHWEEATNHKATHILDFGPGGVSGLGVLTHRNKEGTGARIILAGTLDSNPIDDEYGFKHEIFQTSADKAIKWAPDWLKELRPTLVKNSEGKIYVKTKFSQLLGRAPLMVAGMTPTTVNTDIVSASLNAGYHIELAGGGYFSPVMMTRAIDDIVSRIKPGYGLGINLIYVNPFMLQWGIPLIKDLREKGYPIQSLTIGAGVPSIEVATEYIEDLGLTHLGLKPGSVDAISQVIAIAKAHPTFPIVLQWTGGRGGGHHSFEDFHQPIIQMYSKIRRCSNIVLVAGSGFGSDEDTYPYLSGYWSEKFNYPPMPFDGVLFGSRVMTSKESHTSLAAKKLIVECKGVPDQQWEQTYKKPTGGIITVRSEMGEPIHKIATRGVMFWKELDDTIFNLPKNKLLDALNKKRDHIIKKLNNDFQKPWFGKNANGVCDLQEMTYKEVANRLVELMYVKKSHRWIDVSLRNMYGDFLRRVEERFTSSAGTVSLLQNFNQLNEPEQFTADFFEKFPQAGKQLISEEDCDYFLMLAARPGQKPVPFVPVLDERFEFFFKKDSLWQSEDLESVVDEDVQRTCILHGPVASQYTSKVDEPIGDILNSIHEGHIARLIKEEYAGDESKIPVVEYFGGKKPASVSATSVNIIDGNQVVYEIDSELPNKQEWLDLLAGTELNWLQAFISTDRIVQGSKHVSNPLHDILTPAKHSKVTIDKKTKKLTAFENIKGDLLPVVEIELVKPNTIQLSLIEHRTADTNPVALPFLYKYNPADGFAPILEIMEDRNERIKEFYWKLWFGSSVPYSNDINVEKAILGDEITISSQTISEFTHAIGNKCDAFVDRPGKATLAPMDFAIVIGWKAIIKAIFPKSVDGDLLKLVHLSNGYKMITGAAPLKKGDVVSTKAEIKAVLNQPSGKLVEVVGTIYREGKPVMEVTSQFLYRGEYNDYCNTFQKVTETPVQVAFKSAKDLAVLRSKEWFHLEKDVQFDVLTFRCESTYKFKSANVYSSIKTTGQVLLELPTKEVIQVGSVDYEAGTSYGNPVTDYLSRNGKTIEESVIFENAIPLSSGEELTSKAPGTNEPYAIVSGDYNPIHVSRVFAAYAKLPGTITHGMYSSASIRALVEEWAANNVAARVRAFKCDFVGMVLPNDTLQTTMEHVGMINGRKIIKVETRNVETELPVLIGEAEIEQPTTTYVFTGQGSQEQGMGMELYNSSEVAREVWDKADRHFVNNYGFSILDIVQNNPNELTIHFGGAKGRAIRDNYIGMMFETIGEDGALKSEKIFKDIDETTTSYTFVSPTGLLSATQFTQPALTLMEKAAYEDIKSKGLIPSDIMFAGHSLGEYSALSSLANVMPIESLVDVVFYRGMTMQVAVPRDELGRSNYGMVAVNPSRVSATFDDSALRFVVDEVANKTKWLLEIVNYNVENQQYVAAGDLRALDTLTNVLNVLKINKIDIVKLQEQMSIEKVKEHLYEIVDEVAAKSLAKPQPIDLERGFAVIPLKGISVPFHSSYLMSGVKPFQRFLCKKIPKSSVKPQDLIGKYIPNLTAKPFELTKEYFQSVYDLTKSEKIKSILDNWEQYE", "sequence_length": 2037, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "05d07eab37c17a8724415a12cf8b71db7567899c20be90d27336bbcbc00754ed", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P34731.json", "taxon_id": "5476", "uniprot_accession": "P34731", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus oryzae (strain ATCC 42149 / RIB 40)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fas-meander-pf17951.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fas-meander-pf17951.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fas1-aflb-like-hel-pf08354.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fas1-aflb-like-hel-pf08354.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fas1-dh-region-pf13452.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13452", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fas1-dh-region-pf13452.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fas1-thioest-ins-pf22235.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22235", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fas1-thioest-ins-pf22235.yaml" } ], "pfam_ids": [ "PF00698", "PF01575", "PF08354", "PF13452", "PF16073", "PF17951", "PF22235" ], "protein_name": "Fatty acid synthase subunit beta", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASTPSSGSYDLAIVTPTEDHSLRSFSLSQGNVQQTFLVSTQDGAFLDQQKASFLQSYSKDQSILGLVFEFLQFLLDEACPPAPLGAFLGAIESQCVRDANIHDLIVSEPEAKNIIRTYYRAHAVAGLNPRPAPSGLFSTVNIEAHRILMAFGGQGSTNLVCVDELADLYSLYQPLLEPLIASVAPALASLSREPSTLQHYLGREIDLYSWLTIPESRPDRAFTATAAVSFPIIGLLDMAHYYVLGKLLDSDSPKRLRSALQGLTGHSQGIIVAAAVAQADTWASFLAQAQWAIRLLFWMGYECHTAAPASPLSSAAIRDSIEHGEGSPSWLLSVRGLRSPALDALITDCNRRLPESEHLSIGLINTERNIVVAGSPRSLRGLCLRLREIEADDGQDQSRVPFRQRKPVVHHTFLPVSAPFHSSHLRAAADRVKERFPDASSPQVGDLLTAVYHTRTGQDMREMFSPSNNLIHSLVEAVACETVDWPATLQVSRSKPPSHIVLLSSSRLSDLVSEIVDGRGVRIIAGTVLAPTDPAVLGGKAELLTTKPSQAPTPWAELFKARLVAGPDGRPILETRLSQLLQAPPIITAGMTPTTVHWDFVAAVMQAGYHVELAGGGYFDAAGMTTAIEKLAAHVPPGRGITCNLIYASPHSIAFQIPLIRSMIQRGIPIDGLTIGAGVPSQDVVNEWIQTLGIKHLSLKPGSIAAIYEVIEIAKKHPTFPIILQWTGGRGGGHHSCEDFHEPLLQTYRDIRRCSNLYLVVGSGFGQADQMHPYITGEWSLSFGRPVMPCDGILIGSRMMVAREAHTSPQAKELILAAAGVADSEWEQSFKKPTGGVLTVQSEMGQPIHKLATRGVRLWHEMDKTIFSLPRDKRVAALNARKAEIIRRLSADFAKPWFGYNAAGDAVDLEDMTYTEVIARLIRLVYVSHQHRWIDPSYRQLVLDFTYRTLERVSNADYATDKLDLSQPEQFVEQVQQLCPAATTRRLHPDDVRFFLTICKQRGRKPVNFIPALDEDFEYWFKKDSLWQSEDVDSIIDQDADRVCILQGPVAVQYSRRADQSAREILDEIHHGLANHFEEGPSQSDRPSLAISEMVSARVTVTESNTHRIIRPTSESLPSVEDWQAFLASQVTGSVRSAIMAEEVLRGSQRQANPLRRVLEPRTGQSIQIPLDGRDLRLVEDAKNRPLVHIKPSGDQEVAVDFYYYDFVETPGNLRFTYKFDSKSLSLVENLDGRDDRVKLFYAHLWLGRADLSYHRLSEVFEGEEITLSSDLHRHLHNALRHTVPDATASATTNTLPLEAAIIAAWKPLMEPLFVAELQGDLLRLVHLSNSIRYTPGAAPLEVNDVVATKSQVRAVTIKETGKTISVEAQIFRSKTLVATVTSEFFIKGSFSDYETTFSHQDEAAIELKVQSAIDEALLRDREWFLLDDPTQSLIDKTLVFRLHTVTRWKDQSTFTSLKTTGSIYTKHWNGTEQKVGTVASEVVECHGNPVIDFLQRKGTVVQEKVPLKHPGLIDNGSRTIRLPLDNALYSSVSKDYNPIHTSSVFARFADLPGTITHGMYTAAVSRAVTECLAADGETGRLRSFSASFVGMVLPGDQLTVRIRHEAMCHGRMVLSVAAYREGTDEKVLQGEAEVEQRTSAYLFTGQGSQAQNMGMQLYDSSAVARSVWDEVDRRLLDQYGWSILNVVRANPKQITIHFRGARGRRIRDNYLAMRTETRMPDGSTRLEPILRDLTAKSESYTFFDSRGLLYATQFAQPAILLMEKAAFEDMKANGLIQEGAAFAGHSLGEYGVLASLVDFLPFEMMMSVVFYRGLVMQFTMERDSNGHTGFSMVAVSPKRVGKYFDEAMLRIVVDLIHRQSGKLLEIVNFNVEAEQYVCAGHVRNIYILSGILDLLSRSATGPQLVASLRSASDPAITDVAKEIAVYLEKAPQLNNPTELKRGRATIPLQGIDVPFHSSHLRSGVSVYRRFLEERIQAENVQVDRLVGKFIPNVMGKPFAIDRSYLEEAAAVTGSSVLRELALAA", "sequence_length": 2026, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0da2de1604e8c49742f36b8db4c51f4d8fe652e23a74035d9cbc2ac4343ec00c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2TXG3.json", "taxon_id": "510516", "uniprot_accession": "Q2TXG3", "uniprot_release": "2026_03" } ], "pfam_id": "PF08354", "short_name": "Fas1-AflB-like_hel", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ardcn-pf08401.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ardcn-pf08401.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5710-pf18974.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18974", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5710-pf18974.yaml" } ], "pfam_ids": [ "PF08401", "PF13362", "PF18818", "PF18974" ], "protein_name": "DNA primase TraC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEVKKPFHEQVAERLIEQLKAGTAPWQKPWEPGMPGSFIPLNPTTGKRYKGINAIQLMAQGHADPRWMTYKQAAAAGAQVRRGEKGTPIQYWKFSEEQTKTDEQTGKPVLDANGDPVKVTVQLERPRVFFATVFNAEQIDGLPPLERKEQTWSAVERAEHILAASGATIRHGEHDRAFYRPSTDSIHLPDKGQFPSADNYYATALHELGHWTGHPSRLDRDLAHPFGSEGYAKEELRAEIASMILGDELGIGHDPGQHAAYVGSWIKALQEDPLEIFRAAADAEKIQDFVLAFEQKQIQEQTTQQAIEPAQGATMEQQQDQVARPAIAPADELIAQTLRMYRAGAEPAEGNQSLAALTETTLGFELPADWTGRVQVQANVEVEHDGERSVVPAGDREPEFWGVYANHAWGGHQWLADFAGPDAQTNAEALADRLAVIDAYATANEYEQAAKFARIHEERVRRDPNSTDEDRVAAKEARKAAEGTAMLHDEDLQRRIADYEREQQEMAQAMNAAEQPAAAQAPAKPERAYLNVPFKEKDEVKALGARWDRQERAWYVPAGVDPAPFAKWAREGATAAVEARAEAQPTQPTAERPNAAQERVYLAVPYGERQVAKAAGAQWDKVAKSWYAGPNADMGKLQRWLPDNVPTQQSPAVTPEDEFAEALKSMGCVVTPGGEHPIMDGKKHRIETEGDKKGEKSGFYVGHLDGHPAGYIKNNRTGVEMKWKAKGYALDPAEKAKMQAEAAAKLAARAEEQERQHEATAQRIGRQAQSLVPITEPTPYLRDKGLQVHAGVLTDQEGQKTYIPAYDADGKQWTMQYIQEDGTKRFAKDSRKEGCFHVVGGMDALAAAPALVIGEGYATAATVAEALGHATVAAFDSGNLQAVAEALHAKFPDKPVVIAGDDDRQVQITQGVNPGRTKAQEAAKAVGGKAIFPIFAPGENAYPKELPPITPENYRNHLHAEKRLADAAAGKVQLSEADTAKLKESLLNDGQLAALSNMKKHTDFNDLSERSSLGKDGVERQVRSAVGKVLLDEGQRQKVQQLKQQDIEQQEQRQRRARTY", "sequence_length": 1061, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eaa263f53d78fc23bc2a6a822c4aea3a904bc8375936a9e3f997fb1cda7b6b83", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P27189.json", "taxon_id": "562", "uniprot_accession": "P27189", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ardcn-pf08401.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ardcn-pf08401.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5710-pf18974.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18974", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5710-pf18974.yaml" } ], "pfam_ids": [ "PF08401", "PF13362", "PF18818", "PF18974" ], "protein_name": "DNA primase TraC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPITKAEAQGVTRAFVRDYPGALELAYKFREDAAELYGPRAAEVPADMKGGYVPKETLHAGRAYRGRVDVPLQNVESASDLLMTLRHEVLGHYGANTFAPGEKRALLDGLAAARNEPTLKPLWDDVNRRYAGQSLDVRAEEVFALHCEGIEPSQHQVADQVQQRGQQSFTETCIARVRPMQADDLHNIVCMVAQGLRDRSRTQQNFPQFNELFRRDENMEPKKPFHEVVAEKLIEQLKAGTAPWQKPWEPGEPNAYLPMNPTTGKRYKGINAIHLMAQGRSDARWMTYKQAAAVGAQVRKGEKGTPVQYWKFSEEQDKLDDSGRPVLDAKGQPVKETVMLERPRVFFATVFNGEQIDGLPPLQPKKEQTWNAVERAEHILKASGATITHAAGDRAFYRPSTDSITLPERGQFPSSDRYYATALHELGHWTGHASRLDRDLAHPFGSEGYAKEELRAEIASMIVGDELGIGHDPGQHAAYVGSWIKALQDEPLEVFRAAADAEKIHDYVLAFEQKQVQEQDQQQSQAQDEAVAQALAVDIAEVLDNPDVSFSHYQAFQGDTLEDALRSRGLETVGSITGTDPEQFYAVAHDRLSPVFGIDPSHTDTDNAYLERKGLAQEFANMAEQLHLAQQLQQHGEQIVSSIDAEARWSDGQRIFAFHDQDGEPHQVRSLDELNNYAPDQLMALPALTQQQAAVADQEANMTPPTIDQAAALLAAHPADAVQGIEQAAAARRQLAAGEIDGQAFADATRQHLGVELPPDWSGELRIVGVAEQDGQTVDAAQAGIEPQAFQVYARKADAQFGEDAFAFVAGTRTEGQAEALAERLHLVDALGTDNQHERAAKLARVQEERVRRDPNATEEDISAAKEARKTAEASAMLNDSDAQRRAAELERQERDRQQAQPQAEKPERQYINVPYKEKDEAKSLGARWDRQQQSWYVPPGTDAAPFAKWAQGAATAAVEPRSAQPAPEAQGEAQKPAQQAQQARQYLAVPYEQRNAAKAAGALWDKAAKSWYVGPRADAAKLERWKPENVQAQQGPAMTPREEFAEAMRSAGLFTGSNAQGDHPIMDGKRHRVPVEGGKKGALDGFYVGHLDGHPAGRIINNKTGTDITWKSKGYALSDQEKAKLQAEAAEKLAQRAVEQDKAQEATAQRVGRQMADLVPIEQPTPYLQAKGIQAQAGVMTDREGQKTYIPAFDAEGKQWTMQYIQEDGTKRFAKDSKKEGCFHPVGGMDALAAAPALVISEGYATAAQVAEAVGHATVAAFDSGNLEAVAKALHAKFPDKPVIIAGDDDRHLVMTHGNNPGREKAEAAAQAVGGKAIFPIFAPAENTYPRDLPAITPDSFKTHLRAEQRLADAAAGKVELAGDEAAKLKASMLSGAQIAALSTMKQHTDFNDLAHKSELGIEGVKRQIGAAISQVQRDEQQHQEQKHVEKKQQQIEQRPRRAARIG", "sequence_length": 1448, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6dcfa74b00f4046a2f3eacc6a35e3c9ee822ae97348034931d911f0ac68f9f9c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P27190.json", "taxon_id": "562", "uniprot_accession": "P27190", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus anthracis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ardcn-pf08401.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ardcn-pf08401.yaml" } ], "pfam_ids": [ "PF08401", "PF18840" ], "protein_name": "Uncharacterized protein pXO2-81/BXB0111/GBAA_pXO2_0111", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTYTKKKYTPKTKEQIKEETKEIMDKVLTDITKYYNSPEDMLELANFMAQFSNYSPRNMQLIKSQFPHAYACASFKTFKDAGFHVNKGEKAMKVFHPYVKEFVRDPKTKLPIPLTKLTAEQKQQVKNGELKVEKQTNYYLKATAFDISQTNASPEDLPKIFPNRQFNFEVTEENKELLKLGIQALAEKENIKIKDMGQGALIKELGTIHGAYVEVADSSFAQIVMNTRNTETKELSVAIHELAHAKLHNKKVASLEHVPTEEFEAELTSYIVCKHYGMDTSEASVPYIAEWTKNGQDIEEKDKSIMRVHETASSFINTIDKKISELQREREKNREQNKKEIEDVYVVRYGALTSTEEKIITVRELRERADRDKSYSDVENANTLNDKEYIEAFNKANEENCIALEHNEIKKLMVVIQWSEADLEKNKAIPFGEANAIMSKRIAEIDAESKRAEEKGEYVPYEKTRYHLILPKEMDKDFNRMEVVTMDRLDLGDGIYKSPYEQILNEKRQLSDEVKQALQQEINEYEQTKGQSNPEKLRAVNTTEISEIQQGKVDRFLSNKTEKDEDAAAIKQQEARRMARMAYMQRMER", "sequence_length": 589, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "82df53755fd3e4facddfe4018c01a39667222780c262c62cec75643d98280851", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RMV4.json", "taxon_id": "1392", "uniprot_accession": "Q9RMV4", "uniprot_release": "2026_03" } ], "pfam_id": "PF08401", "short_name": "ArdcN", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 9, "discovery_scanned": true, "example_count": 9, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmtc-duf1736-ipr013618.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmtc-duf1736-ipr013618.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmtc-duf1736-pf08409.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08409", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmtc-duf1736-pf08409.yaml" } ], "pfam_ids": [ "PF08409", "PF13181", "PF13431" ], "protein_name": "Protein O-mannosyl-transferase F38B6.6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKHLHHKVSGSCDPGDRSPKEKGRSQGIRNLLILISLSIIPYLSCLGGDFVFDDAESIVNNPIVNGKDPLLQIFSRDFWGRSISSSNSHKSYRPVTTFTFWLNYKLHETSTLGYHVVNIICHTVATLVFYKLGKQLEHIFDFFNIAFSASILFAVHPVHTEAVANITGRAELLMTIFSLAALILHVKNREINCKFVLLVILSTLSKEQGLMTIPIAICIDFLAHRSCRSNFVRMICLLVAIGFLRMMVNGFEAAKFTKLDNPTAFLNSKFYRMINYTYIWLYHAYLLVIPVNLCFDYSMGCISSITTMWDLRALSPVLIFTIVIIGVKFQNECRAFTLSSLMGIISFLPASNIFFTVGFSIAERVLYLPSAGFCLLCAIIFKKLSVHFKNADVLSITLILLLISKTYRRSGEWKTELSLYSSGLSVCPTNAKIHYNLGKVLGDNGLTKDAEKNYWNAIKLDPSYEQALNNLGNLLEKSGDSKTAESLLARAVTLRPSFAVAWMNLGISQMNLKKYYEAEKSLKNSLLIRPNSAHCLFNLGVLYQRTNRDEMAMSAWKNATRIDPSHSQSWTNLFVVLDHLSQCSQVIDLSYQALSSVPNESRVHMQIGSCHAKHSNFTAAENHIKSAIDLNPTSVLFHANLGILYQRMSRHKEAESQYRIVLALDSKNIVAKQNLQKLEEHNCYNSTLP", "sequence_length": 690, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fea1f95d989ba0920eee9f0fa819e9204a1b72cc1812ed7ddcd1a9a56f0959dd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q20144.json", "taxon_id": "6239", "uniprot_accession": "Q20144", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmtc-duf1736-ipr013618.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmtc-duf1736-ipr013618.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmtc-duf1736-pf08409.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08409", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmtc-duf1736-pf08409.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q56A06", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00515", "PF08409", "PF13181", "PF13424", "PF13432" ], "protein_name": "Protein O-mannosyl-transferase TMTC2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3e993e633259dc16812e928bec21fa543886d09829bf4f457e4accda14d69723", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MIAELVSSALGLALYLNTLSADFCYDDSRAIKTNQDLLPETPWTHIFYNDFWGTLLTHSGSHKSYRPLCTLSFRLNHAIGGLNPWSYHLVNVLLHAAVTGLFTRFSKALLGDGYWTFMAGLMFASHPIHTEAVAGIVGRADVGASLFFLLSLLCYIKHCSTRGYSARTWGWFLGTGLCAGCSMLWKEQGVTVLAVSAVYDVFVFHRLKMKQILPTIYKRKNLSLFLSISLLTFWGTCLLGARLYWMGNKPPSFSNSDNPAADSDSLLARTLTFLYLPTKNLWLLLCPDTLSFDWSMDAVPLLKTVCDWRNLHTVAFYSGLLLLAYCGLKNPSLEGECNGKALTNGKQNANGHSCHSDVEYRNSEMKPSFASKVENGIKNCVPQRTQLPSTENIVILSLSLLIIPFIPATNLFFYVGFVIAERVLYIPSMGFCLLITVGARALYVKVQKRFLKSLVFYATATLIVFYGVKTAIRNGDWQNEEMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAESAYRNALFYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENLKDPHAHKSSVTSCLYNLGKLYHEQGRYEEALSVYREAIQKMPRHFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLTEAAEMAKKAAELDNTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKLWNIMEKQGLKTSKT", "sequence_length": 836, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3e993e633259dc16812e928bec21fa543886d09829bf4f457e4accda14d69723", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q56A06.json", "taxon_id": "10090", "uniprot_accession": "Q56A06", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmtc-duf1736-ipr013618.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmtc-duf1736-ipr013618.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmtc-duf1736-pf08409.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08409", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmtc-duf1736-pf08409.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-17-pf13431.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-17-pf13431.yaml" } ], "pfam_ids": [ "PF08409", "PF13181", "PF13431", "PF13432" ], "protein_name": "Protein O-mannosyl-transferase TMTC4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVLDTDLDHILPSSVLPPFWAKLVVGSVAIVCFARSYDGDFVFDDSEAIVNNKDLQAETPLGDLWHHDFWGSRLSSNTSHKSYRPLTVLTFRINYYLSGGFHPVGFHVVNILLHSGISVLMVDVFSVLFGGLQYTSKGRRLHLAPRASLLAALLFAVHPVHTECVAGVVGRADLLCALFFLLSFLGYCKAFRESNKEGAHSSTFWVLLSIFLGAVAMLCKEQGITVLGLNAVFDILVIGKFNVLEIVQKVLHKDKSLENLGMLRNGGLLFRMTLLTSGGAGMLYVRWRIMGTGPPAFTEVDNPASFADSMLVRAVNYNYYYSLNAWLLLCPWWLCFDWSMGCIPLIKSISDWRVIALAALWFCLIGLICQALCSEDGHKRRILTLGLGFLVIPFLPASNLFFRVGFVVAERVLYLPSVGYCVLLTFGFGALSKHTKKKKLIAAVVLGILFINTLRCVLRSGEWRSEEQLFRSALSVCPLNAKVHYNIGKNLADKGNQTAAIRYYREAVRLNPKYVHAMNNLGNILKERNELQEAEELLSLAVQIQPDFAAAWMNLGIVQNSLKRFEAAEQSYRTAIKHRRKYPDCYYNLGRLYADLNRHVDALNAWRNATVLKPEHSLAWNNMIILLDNTGNLAQAEAVGREALELIPNDHSLMFSLANVLGKSQKYKESEALFLKAIKANPNAASYHGNLAVLYHRWGHLDLAKKHYEISLQLDPTASGTKENYGLLRRKLELMQKKAV", "sequence_length": 741, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c299d8d30fdb08394bafb6d1d7f9d2cfe196fd65e34e442930d85e1188b3797d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T4D3.json", "taxon_id": "9606", "uniprot_accession": "Q5T4D3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmtc-duf1736-ipr013618.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmtc-duf1736-ipr013618.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmtc-duf1736-pf08409.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08409", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmtc-duf1736-pf08409.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-17-pf13431.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-17-pf13431.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-6-pf13174.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-6-pf13174.yaml" } ], "pfam_ids": [ "PF08409", "PF13174", "PF13181", "PF13431" ], "protein_name": "Protein O-mannosyl-transferase TMTC3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANINLKEITLIVGVVTACYWNSLFCGFVFDDVSAILDNKDLHPSTPLKTLFQNDFWGTPMSEERSHKSYRPLTVLTFRLNYLLSELKPMSYHLLNMIFHAVVSVIFLKVCKLFLDNKSSVIASLLFAVHPIHTEAVTGVVGRAELLSSIFFLAAFLSYTRSKGPDNSIIWTPIALTVFLVAVATLCKEQGITVVGICCVYEVFIAQGYTLPLLCTTAGQFLRGKGSIPFSMLQTLVKLIVLMFSTLLLVVIRVQVIQSQLPVFTRFDNPAAVSPTPTRQLTFNYLLPVNAWLLLNPSELCCDWTMGTIPLIESLLDIRNLATFTFFCFLGMLGVFSIRYSGDSSKTVLMALCLMALPFIPASNLFFPVGFVVAERVLYVPSMGFCILVAHGWQKISTKSVFKKLSWICLSMVILTHSLKTFHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYMMAKSLMPQIIPGKKYAARIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKKNFNRALELNPKHKLALFNSAIVMQESGEVKLRPEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHLNIVRDKISSSSFIEPIFPTSKISSVEGKKIPTESVKEIRGESRQTQIVKTSDNKSQSKSNKQLGKNGDEETPHKTTKDIKEIEKKRVAALKRLEEIERILNGE", "sequence_length": 915, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f76e6efee5330d1a29ff751a047bfb113c15594abc388f1570bf3809fe16ce9c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZXV5.json", "taxon_id": "9606", "uniprot_accession": "Q6ZXV5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-macromolecule-metabolic-process-go0060255.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0060255", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-macromolecule-metabolic-process-go0060255.yaml" } ], "pfam_ids": [ "PF07719", "PF08409", "PF13181", "PF13414", "PF13432" ], "protein_name": "Protein O-mannosyl-transferase Tmtc3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTNPNPGIHQYAPSTLPREREREGATNSPQRNLLEFLCICVACIVCYYNSTQCGLVFDDISAIRDNKDLRPHTPLINVFLNDFWGTPMRKEQSHKSYRPLTVLTFRFNYLLHALEPFGYHLVNLLLHLSVCLLWRRVCRLLLRQCAASGSNAISAPSSSSVSQLNTCAFVASLLFAVHPVHTEAVTGVVGRAELLSSICFLAAFLSYAKSVGDSGCPRRTNWLTLFGCFGSCLLASMLCKEQGITIAGICVVYELFVVHQLRPLHLCHFVLRLFDERTEQQSPKLANPSGIRRWSSSTLWKRLSFLVGITLTLLVGRVYVMGSQLPIFTRFDNPASAADTPERQLTYGYLIYLNCWLLLCPSLLCCDWTMGTVPLLQGFTDSRNITTLLTFLALGAMVAKTCFTRNLALSRTLIMCLGWMVLPFLPASNLFFPVGFVVAERILYMPSMGYCLLVAYGFEQLQRRGSLSWQRFSQAALAILLLTHALKTHQRNLDWRTEYSLFMSGVHVNQRNAKLYNNVGHALENEGKFEEALLYFQQAVRIQTDDIGAHINVGRTFNNLKRYAEAEQAYVQAKALFPQAKPGVSYHARIAPNHLNVFINLANLIAKNQTRLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDNENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQELGGEEARRVSRSRLYKVLENDDQNEKVYFNLGMLAMDESSFDEAEQFFKRAIHLKADFRSALFNLALLLADTKRPLDAVPFLNQLIRHHPSHVKGLILLGDIYINHMKDLDEAEKCYRSILHYDPHNTQGLHNLCVVFVERKRLAKAAACLQYAQRLAPAEDYIGRHLQIVLARLQKINKLPESAPERKLAYEDYDPLEFKLPQDRPTHKSRKRS", "sequence_length": 926, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dc2a7483d3ae4a8662a8280f8448395a90e3e19e9dfb1bca9a17e1cb5d53ba07", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7K4B6.json", "taxon_id": "7227", "uniprot_accession": "Q7K4B6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/outer-hair-cell-apoptotic-process-go1905584.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905584", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/outer-hair-cell-apoptotic-process-go1905584.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-endoplasmic-reticulum-calcium-ion-concentration-go0032470.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032470", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-endoplasmic-reticulum-calcium-ion-concentration-go0032470.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmtc-duf1736-ipr013618.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmtc-duf1736-ipr013618.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmtc-duf1736-pf08409.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08409", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmtc-duf1736-pf08409.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-17-pf13431.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-17-pf13431.yaml" } ], "pfam_ids": [ "PF00515", "PF08409", "PF13431", "PF13432" ], "protein_name": "Protein O-mannosyl-transferase TMTC4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVELDADLDHIVPSVLPPFWAKLVVGFVSLLCFARSYDGDFVFDDSEAIVNNKDLQSDTPLGDLWHHDFWGSKLSSNTSHKSYRPLTVLTFRINYYLSGGFHPVGFHVVNILLHGSISILMLDVFSVLFGGLQYTGKGQRVHLAPRASLLATLLFAVHPVHTECVAGVVGRADLLCALFFLLSFLGYCQAFKETGNKEGTHSSTFWVLLSIFLGAVAMLCKEQGITVLGLNAVFDILVIGKLDILAAVRKVLHKDKSQENAGMFKNGGLLFRIALLTIGGTSMLYIRWKIMGTGPPAFTEVDNPASFADSMLVRAINYNYYYSLNAWLLLCPWWLCFDWSMGCIPLIKSVGDWRVIALAALWLCLIGLIFQALCSEDSCKRRILTLGLGFLVIPFLPASNLFFRVGFVVAERVLYLPSAGYCVLLTFGFGALSRHTKKKKPVAAIILGILLINALRCVIRSGEWRSEEQLFRSALSVCPLNAKVHYNIGKNLADQGNQTAAIKYYREAVRLNPKYVHAMNNLGNILKERNELQEAEELLSLAVQIQPDFAAAWMNLGIVQNSLKRFEEAEQSYRTAIKHRRKYPDCYYNLGRLYADLNRHVDALNAWRNATVLKPEHSLAWNNMIILLDNTGNLAQAEAVGREALQLIPNDHSLMFSLANVLGKSQKYKESEALFLKAIKANPNVASYHGNLAVLYHRWGHLDSAKKHYEISLQLDPVAVGTKENYSLLRRKLEQTQKKDV", "sequence_length": 741, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ff805855c6aa285f7a1ca130e81d4a0fb1c09fd5463f2cb22a40cef07d1c96e1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BG19.json", "taxon_id": "10090", "uniprot_accession": "Q8BG19", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/dolichyl-phosphate-mannose-protein-mannosyltransferase-activity-go0004169.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0004169", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/dolichyl-phosphate-mannose-protein-mannosyltransferase-activity-go0004169.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/bud-outgrowth-involved-in-lung-branching-go0060447.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0060447", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/bud-outgrowth-involved-in-lung-branching-go0060447.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmtc-duf1736-ipr013618.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmtc-duf1736-ipr013618.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmtc-duf1736-pf08409.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08409", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmtc-duf1736-pf08409.yaml" } ], "pfam_ids": [ "PF00515", "PF08409", "PF13174", "PF13181" ], "protein_name": "Protein O-mannosyl-transferase TMTC3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLEGKMADINFKEVTLIVSVVAACYWNSLFCGFVFDDVSAILDNKDLHPSTPLKTLFQNDFWGTPMSEERSHKSYRPLTVLTFRLNYLLSELKPMSYHLLNTVFHAVVSVIFLKVCRLFLDKRSSMIAALLFAVHPIHTEAVTGVVGRAELLSSVFFLAAFLSYTKSKGPDNSIVWTPIVLTVFLVAVATLCKEQGITVVGICCVYEVFVAQGYTLPMLCTVAGQFLRGKGSIPLSMLQTLVKLIVLMLSTLLLVVVRVQVIQSQLPVFTRFDNPAAVSPTPTRQLTFNYLLPVNAWLLLNPSELCCDWTMGTIPLIESFLDVRNLATFAFFCFLGALGIFSLRYPGDSSKTVLMALCLMALPFIPASNLFFPVGFVVAERVLYVPSMGFCILVAHGWQKISNKSVLKKLSWVCLSMVILTHALKTLHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTYKNLNRSREAEASYMLAKSLMPQIIPGKKYAARIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGEVKLRPEARKRLLNYVNEEPQDANGYFNLGMLAMDDKKDSEAESWMKKAIKLQPDFRSALFNLALLYSQTAKELKALPILEELLKYYPDHTKGLILKGDILMNQKKDIPGAKKCFEKILEMDPSNVQGKHNLCVVYFEEKELLKAERCLVETLALAPHEEYIQRHLSIVRDRISSSGIVEQPLAPADKTPGTEEREEIPSEDVKEISSESRPPQILKTNNNRNSKSNKQSTENADQDAPHKTTKDIKEIEKKRVAALKRLEEIERILNGE", "sequence_length": 920, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "657f12fd668a1c8de1cf5c05048acf319a4db75590370bcdeb654904c28f1e73", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BRH0.json", "taxon_id": "10090", "uniprot_accession": "Q8BRH0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmtc-duf1736-ipr013618.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmtc-duf1736-ipr013618.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmtc-duf1736-pf08409.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08409", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmtc-duf1736-pf08409.yaml" } ], "pfam_ids": [ "PF00515", "PF08409", "PF13181", "PF13424", "PF13432" ], "protein_name": "Protein O-mannosyl-transferase TMTC2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIAELVSSALGLALYLNTLSADFCYDDSRAIKTNQDLLPETPWTHIFYNDFWGTLLTHSGSHKSYRPLCTLSFRLNHAIGGLNPWSYHLVNVLLHAAVTGLFTSFSKILLGDGYWTFMAGLMFASHPIHTEAVAGIVGRADVGASLFFLLSLLCYIKHCSTRGYSARTWGWFLGSGLCAGCSMLWKEQGVTVLAVSAVYDVFVFHRLKIKQILPTIYKRKNLSLFLSISLLIFWGSSLLGARLYWMGNKPPSFSNSDNPAADSDSLLTRTLTFFYLPTKNLWLLLCPDTLSFDWSMDAVPLLKTVCDWRNLHTVAFYTGLLLLAYYGLKSPSVDRECNGKTVTNGKQNANGHSCLSDVEYQNSETKSSFASKVENGIKNDVSQRTQLPSTENIVVLSLSLLIIPFVPATNLFFYVGFVIAERVLYIPSMGFCLLITVGARALYVKVQKRFLKSLIFYATATLIVFYGLKTAIRNGDWQNEEMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLKDPHAHKSSVTSCLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKLWNIMEKQGLKTSKT", "sequence_length": 836, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7eaa5f5623ec9f01b39b738c6504a13a18105ffe11d68a15e26b649efcb8e312", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N394.json", "taxon_id": "9606", "uniprot_accession": "Q8N394", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmtc-duf1736-ipr013618.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmtc-duf1736-ipr013618.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmtc-duf1736-pf08409.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08409", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmtc-duf1736-pf08409.yaml" } ], "pfam_ids": [ "PF08409", "PF13414", "PF13424", "PF13432" ], "protein_name": "Protein O-mannosyl-transferase Tmtc4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDLVHKATLHSMVCQAILVLICLLCYGCGGLSGAKFVFDDTVAIVKNRDVNSLPTNWTAIFTHDFWGASLLSSDSHKSFRPLTTLMFHCEYALLGLSAAHMKFLNLLLHCVNTLLMWRLIRSLYVPEVSTARWAILSAALFAAHPIHTEAVSGVVGRAELMFGMIHLLCLLLTVANTGRLGPQTGGLIMLLTAVGMLFKESAVTIPMSCVLLDYFQNGYYHLRFKDQWSLLRTRISYLFYLLGTLGLLTARLWWQDFETPTFKEVDNPVAHNEHVLTRGLSQQYLLVMNIWLMLCPHWLCYDWALGCVKLVTNIWDLRLQGVIGFYSIVLVALMNFRRLPGMMLALGLMIVPFLPASGIICVGFVIAERTLYVPSIGFCLLSIYGFLYWYDSSTENTHWRTALRILLMLLFSVMMVRTRQRATDWLNEEQLFKSALQVCPDNAKVHYNIARLATDMGNNTKAFQHYHRAIELYPNYESALMNLGNLYREHGQLSTAEEYIRLALQAYPAFPAAWMNLGIVQSAQGKYDKALASYEKALKYRANFAVCYYNMGNLYLEQKRYAEALHHWQHAVALNPRQPKAWANILTMLDNKGLQDDALRISNQALQHLPNDVSILFIRANVLGKLKHYTEAEAIYKRVIELEPHNTLYHTNLGVLYHRWDKTQEAIEAYRTAISISAARATTARENLSKLLKRLEREAQVMQR", "sequence_length": 705, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a190f3074d7d2f962669429132456dfb0d18c111819933c6bfcb4b16e90ef887", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VF81.json", "taxon_id": "7227", "uniprot_accession": "Q9VF81", "uniprot_release": "2026_03" } ], "pfam_id": "PF08409", "short_name": "TMTC_DUF1736", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08410", "short_name": "DUF1737", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-rna-catabolic-process-go1902369.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1902369", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-rna-catabolic-process-go1902369.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nrde-2-pf08424.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08424", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nrde-2-pf08424.yaml" } ], "pfam_ids": [ "PF08424" ], "protein_name": "Nuclear exosome regulator NRDE2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFRAYGNNGLKNPERISGENPDLYTQTRAAVQQRATTTLKRNEKQKLAVQNDSVFQQVGIGESDSDDDNGGVRIRMSPHRYIDPDDVFTLPEVKKQNALRDAKIAARAAQATAYNTFPSVKSLNGCQDPPETSQQSTSRKRSASNSRSPSRSHSRRYDRDNGRQRSRSREKKRRKKERRRKRSSSRSSSSSRSRDRSSRARDTSSHTLMKMNKPAKYAFLTDEEYRTCDAYISSAFITQTKSDCENYTQGVPKKEIAKCRLSVKFIVGLEHNNILFNNIYGAEYARDKENRPFWEQLDRYLKDVPKETFFRYVPPVGGYWKIRDRVDLLNLDHIDDDVLANDSDNRKDAFTFELEQAKKTFSENVHNIDALIKVISMEEEMCRRNVGSFSSSNPAALAERHQEMVKKAIKADGRNAKLRLMKIELLIKMDPNSPTIIDDFKNLTITFPHEPMVWIKYLDYIQYDSNVYNYKKLKNAFEDCIRQVTGLTNGTLLSHLNAVNDRPLLRMFHLWIYIRYLKWMISCAHTPVVLANIQATFEYNFGLADVEKRTSTNSKEREVRLEEFWESGLPRIGDEGAVGAEKMLKQSEELSDEDIQKLENDDFDILISRTEETIATCLQAQRDVQISWIEVEREMMNIDARVKRTKLKDCELYEDHVDDLETCELWDIIPFDRIRYYEAPGDCANFDFVQPFLELLGVKFLNSTNCFTTTEQIISDWISNDSTVNFYKTPTYTEKKCFEVGNNILKFMLYNRLKLTENNPEYLDKTMVKYLLAMLVTEASEQEKKLNFHSFKLNLKNLVGTFITKHPDIFKRAMLSKITGIVYMEKFVSWWERALKEQEKVVEADERRKNYKEIKMEEGVVDDVKFDVILLKKDKERVQTIRDKIRDMIDIAIPKSTEKLIQSADSSLPTLQLHLYANVLRGRLSILNQNALEETRDVFCKEILGIHTSEFESDEALLLALDQGLNELLEHCKEKDNLESVDSIPELPRAEALCEALKVVAVFVFLDKMAFSRRAVDCLIANAITKFEQFEAKKNDFNRGTYEKYCDQIDLKFITDTLITFFSHKKHRFIYNENFKKLIFQASQAFPCDSKYAKMLGELHSSGRLQVMKLQGFTDSRNSILNAKRDQQFDPELETRLLMNSLTIMFSWMNAANRIGDAGNQILYKNWKREAANTRDPAIWRQVIRVASKLSQKILKDDAYTRARGQCTWALNLHFDYIEAKTVRKNGDLMEMIYLILEQSMGQEHSLFVTDEEYMKTQQEIGLQYSESGR", "sequence_length": 1270, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "555eb7a3b890c466a109d5aa273c2ff0f6bc092bdea17c809882ca10c2db5581", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G5EG51.json", "taxon_id": "6239", "uniprot_accession": "G5EG51", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-rna-catabolic-process-go1902369.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1902369", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-rna-catabolic-process-go1902369.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/mtr4-interacting-domain-mid-found-in-nuclear-exosome-regulator-nrde2-a-cd22200.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22200", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/mtr4-interacting-domain-mid-found-in-nuclear-exosome-regulator-nrde2-a-cd22200.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nrde-2-pf08424.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08424", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nrde-2-pf08424.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/hat-half-a-tpr-repeat-ipr003107.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003107", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/hat-half-a-tpr-repeat-ipr003107.yaml" } ], "pfam_ids": [ "PF08424" ], "protein_name": "Nuclear exosome regulator NRDE2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALFPAFADVSEASGDGAFRKELDWLSNPSFRVGNLTSLSRQTEEVTALASEGSPPPRYSFIRSPLKSELSGESNTSEKLAQTSRKKKKEKKKRRKHQHHRKTKRRHEQLSSSGSESDTEAGKDRASRSIRDDQKEAEKPCQGSNAAAAVAAAAGHRSIWLEDIHDLTDVFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGASAAKKHSHRHLERYFTKKNVGLMRTEGIAVCSNPEPASSEPVTFIPVKDSAEAATPVTSWLNPLGIYDQSTTQWLQGQGPAEQESKQPDSQQDRENAALKARVEEFNRRVRENPWDTQLWMAFVAFQDEVMRSPGIYALGEGEQEKHRKSLKLLLEKKLAVLERAIESNPGSVELKLAKLQLCSEFWEPSALAKEWQKLLFLHPNNTSLWQRYLSFCQSQFGTFSVSKLHSLYGKCLSTLSAVKDGSMLSHPVLPGTEEAMFGLFLQQCHFLRQAGHSEKVISLFQAMVDFTFFKPDSVKELPTKVQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVLITPDEDDEEPEEEDQEIKDKTLPRWQIWLAVERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSPDLQFQLIQAFLQFLGVPSGFLPPASCLYLAMDESSIFESELYDEKPLTYFNPSFSGISCVGSMEQLGRPRWTKGHNREGEEFVRNVFHLVLPLLAGKQKSQLSLSWLRYEIAKVIWCLHTKKKRLKSQGKSCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNTEDARKVFDTALSMAGSSELKDRELCELSLLYAELEMELSPDSRGATTGRAVHILTRLTESSPYGPYTGQVSSTQVLKARKAYELALQDCLGQSCASSPAPAEALDCLGSLVRCFMLFQYLTVGIDAAVQIYGRVFAKLKGSARLEDPGPEDSTSSQSLTNVLEAVSMMHTSLLRFHMNVCVYPLAPLRETLSDALKLYPGNQVLWRAYVQIQNKSHSANKTRRFFDTVTRSAKHLEPWLFAIEAEKLRKKLVESVQRVGGREVHATIPETGLTHRIRALFENAIRSDKGNQCPLLWRMYLNFLVSLGNKERSKGVFYKALQSCPWAKVLYMDAMEYFPDELQEILDVMTEKELRVRLPLEELELLLED", "sequence_length": 1172, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "54dac8e2ba2d5f97e0997458f27758ca630cb2506c5e6cb964193e5c2458c320", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q80XC6.json", "taxon_id": "10090", "uniprot_accession": "Q80XC6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-rna-catabolic-process-go1902369.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1902369", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-rna-catabolic-process-go1902369.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/mtr4-interacting-domain-mid-found-in-nuclear-exosome-regulator-nrde2-a-cd22200.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22200", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/mtr4-interacting-domain-mid-found-in-nuclear-exosome-regulator-nrde2-a-cd22200.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nrde-2-pf08424.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08424", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nrde-2-pf08424.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9H7Z3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF08424" ], "protein_name": "Nuclear exosome regulator NRDE2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0d8802ae6ac9e793b73e1c33ffbb48862b72b7159db40cfb6d6b827ccded0bb3", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MALFPAFAGLSEAPDGGSSRKELDWLSNPSFCVGSITSLSQQTEAAPAHVSEGLPLTRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSRGVGGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGTSTEKKHSRKQVERYFTKKSVGLMNIDGVAISSKTEPPSSEPISFIPVKDLEDAAPVTTWLNPLGIYDQSTTHWLQGQGPPEQESKQPDAQPDSESAALKAKVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLKLILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPALPGTEEAMFALFLQQCHFLRQAGHSEKAISLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWKAWMHQQERGGWVVINPDEDDDEPEEDDQEIKDKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSHDLQFQLVEAFLQFLGVPSGFTPPASCLYLAMDENSIFDNGLYDEKPLTFFNPLFSGASCVGRMDRLGYPRWTRGQNREGEEFIRNVFHLVMPLFSGKEKSQLCFSWLQYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENCNNFCLWKQYAHLEWLLGNTEDARKVFDTALGMAGSRELKDSDLCELSLLYAELEVELSPEVRRAATARAVHILTKLTESSPYGPYTGQVLAVHILKARKAYEHALQDCLGDSCVSNPAPTDSCSRLISLAKCFMLFQYLTIGIDAAVQIYEQVFAKLNSSVFPEGSGEGDSASSQSWTSVLEAITLMHTSLLRFHMKVSVYPLAPLREALSQALKLYPGNQVLWRSYVQIQNKSHSASKTRRFFDTITRSAKPLEPWLFAIEAEKLRKRLVETVQRLDGREIHATIPETGLMHRIQALFENAMRSDSGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVEYFPDEMQEILDLMTEKELRVRLPLEELELLLED", "sequence_length": 1164, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0d8802ae6ac9e793b73e1c33ffbb48862b72b7159db40cfb6d6b827ccded0bb3", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H7Z3.json", "taxon_id": "9606", "uniprot_accession": "Q9H7Z3", "uniprot_release": "2026_03" } ], "pfam_id": "PF08424", "short_name": "NRDE-2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/armadillo-like-helical-domain-containing-protein-3-c-terminal-ipr013636.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013636", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/armadillo-like-helical-domain-containing-protein-3-c-terminal-ipr013636.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/armh3-c-pf08427.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/armh3-c-pf08427.yaml" } ], "pfam_ids": [ "PF08427" ], "protein_name": "Armadillo-like helical domain-containing protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVIAQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAHEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEMGLVTTPVSPAPTTPVTPLGTTPPSSDVISSVELPLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYIRCIQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAASKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEEQVLEVVRANYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISTNVRRNLAFHTLSQEVLLKEFSTIS", "sequence_length": 689, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "003044e28910ce053da87f7dd848ca20ae738581408000f06d6056c8f2160fab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T2E6.json", "taxon_id": "9606", "uniprot_accession": "Q5T2E6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-activation-cascade-go0072376.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0072376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-activation-cascade-go0072376.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/armadillo-like-helical-domain-containing-protein-3-c-terminal-ipr013636.yaml", "qualification_status": "NOT_ASSESSED", 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"short_name": "TiaS_FLD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:F4HW04", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03104", "PF08490", "PF22634", "PF22912", "PF23250" ], "protein_name": "DNA polymerase epsilon catalytic subunit A", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f66e59591e912f675d57193250483adb139123bd4d9b56441c05d74ee96219e1", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSGDNRRRDRKDTRWSKKPKVVNTAEDELESKLGFGLFSEGETRLGWLLTFSSSSWEDRDTGKVYSCVDLYFVTQDGFSFKTKYKFRPYFYAATKDKMELELEAYLRRRYERQVADIEIVEKEDLDLKNHLSGLQKKYLKISFDTVQQLMEVKRDLLHIVERNQAKFDALEAYESILAGKREQRPQDCLDSIVDLREYDVPYHVRFAIDNDVRSGQWYNVSISSTDVILEKRTDLLQRAEVRVCAFDIETTKLPLKFPDAEYDQIMMISYMVDGQGFLIINRECVGEDVEDLEYTPKPEFEGYFKVTNVKNEVELLQRWFYHMQELKPGIYVTYNGDFFDWPFIERRASHHGIKMNEELGFRCDQNQGECRAKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAMEKPQTMASYSVSDAVATYYLYMTYVNPFIFSLATIIPMVPDEVLRKGSGTLCEMLLMVEAYKANVVCPNKNQADPEKFYQNQLLESETYIGGHVECLESGVFRSDIPTSFKLDSSAYQQLIDNLGRDLEYAITVEGKMRMDSISNYDEVKDEIKEKLEKLRDDPIREEGPLIYHLDVAAMYPNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGVTFMGKKSDYYHLKKQIESEFVDAGANIMSSKSFLDLPKVDQQSKLKERLKKYCQKAYKRVLDKPITEVREAGICMRENPFYVDTVRSFRDRRYEYKTLNKVWKGKLSEAKASGNSIKIQEAQDMVVVYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIERIGKPLELDTDGIWCCLPGSFPENFTFKTIDMKKLTISYPCVMLNVDVAKNNTNDQYQTLVDPVRKTYKSHSECSIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNHDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVAAVADRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLAEFLGVTMVKDKGLRCQYIVACEPKGTPVSERAVPVAIFTTNPEVMKFHLRKWCKTSSDVGIRLIIDWSYYKQRLSSAIQKVITIPAAMQKVANPVPRVLHPDWLHKKVREKDDKFRQRKLVDMFSSANKDVVLDTDLPVTKDNVEDIEDFCKENRPSVKGPKPIARSYEVNKKQSECEQQESWDTEFHDISFQNIDKSVNYQGWLELKKRKWKVTLEKKKKRRLGDLRSSNQVDTHEINQKVGQGRGGVGSYFRRPEEALTSSHWQIIQLVPSPQSGQFFAWVVVEGLMLKIPLSIPRVFYINSKVPIDEYFQGKCVNKILPHGRPCYSLTEVKIQEDQFKKESKKRAALLADPGVEGIYETKVPLEFSAICQIGCVCKIDNKAKHRNTQDGWEVGELHMKTTTECHYLKRSIPLVYLYNSTSTGRAIYVLYCHVSKLMSAVVVDPFNGNELLPSALERQFRDSCLELSLDSLSWDGIRFQVHYVDHPEAAKKIIQRAISEYREENCGPTVAVIECPDFTFMKEGIKALDDFPCVRIPFNDDDNSYQPVSWQRPAAKIAMFRCAAAFQWLDRRITQSRYAHVPLGNFGLDWLTFTIDIFLSRALRDQQQVLWVSDNGVPDLGGINNEEAFFADEVQQTSLVFPGAYRKVSVELKIHNLAVNALLKSNLVNEMEGGGFMGFEQDVNPRGINSNDNTSFDETTGCAQAFRVLKQLIHSCLTDVRKSKNIYADSILQRLSWWLCSPSSKLHDPALHLMLHKVMQKVFALLLTDLRRLGAIIIYADFSKVIIDTVKFDLSAAKAYCESLLSTVRNSDIFEWILLEPVHYWHSLLFMDQYNYAGIRADDEISLDEVTIEPKWSVARHLPEYIERDFIIIIAKFIFDPWKFAIENKKGSSESLEAQMIEYLREQIGSTFINMLVKKVDDIMSHMKEINVSDASRVSGQAPKGDYSLEFIQVISAVLALDQNVQQDVLVMRKSLLKYIKVKECAAEAEFLDPGPSFILPNVACSNCDAYRDLDICRDPALLTEKEWSCADTQCGKIYDREQMESSLLEMVRQRERMYHMQDVVCIRCNQVKAAHLTEQCECSGSFRCKESGSEFSKRMEIFMDIAKRQKFRLLEEYISWIIYGPSY", "sequence_length": 2161, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f66e59591e912f675d57193250483adb139123bd4d9b56441c05d74ee96219e1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4HW04.json", "taxon_id": "3702", "uniprot_accession": "F4HW04", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1744-pf08490.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08490", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1744-pf08490.yaml" } ], "pfam_ids": [ "PF03104", "PF08490", "PF22634", "PF22912", "PF23250" ], "protein_name": "DNA polymerase epsilon catalytic subunit B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGRRCDRRLNVQKVSAADELETKLGFGLFSQGETRLGWLLTFASSSWEDADTGKTFSCVDLFFVTQDGSSFKTKYKFRPYLYAATKDNMELEVEAYLRRRYERQVADIQIVHKEDLYLKNHLSGLQKKYLKVSFDTVQQLVEVKRDLLHIVERNLAKFNALEAYESILSGKREQRPQDCLDSVVDLREYDVPYHVRFAIDNDVRSGQWYNVSISSTDVILEKRTDLLQRAEVRVCAFDIETVKLPLKFPDAEYDQIMMISYMVDGQGFLITNRECVGKDIEDLEYTPKPEFEGYFKVTNVTNEVELLRKWFSHMQELKPGIYVTYNGDFFDWPFIERRASHHGIKMNEELGFRCDQNQGECRAKFVCHLDCFSWVKRDSYLPQGSQGLKAVTKVKLGYDPLEVNPEDMVRFAMEKPQTMASYSVSDAVATYYLYMTYVHPFVFSLATIIPMVPDEVLRKGSGTLCEMLLMVEAYKANVVCPNKNQADPEKFYQGKLLESETYIGGHVECLQSGVFRSDIPTSFKLDASAYQQLIDNLGRDLEYAITVEGKMRMDSVSNFDEVKEVIREKLEKLRDDPIREEGPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNGPEKTCLRKLEWVWRGVTFKGNKSEYYHLKKQIESESVDAGANMQSSKPFLDLPKVEQQSKLKERLKKYCQKAYSRVLDKPITEVREAGICMRENPFYVDTVRSFRDRRYEYKTLNKVWKGKLSEAKASGNLIKIQEAHDMVVVYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIERIGKPLELDTDGIWCALPGSFPENFTFKTIDMKKFTISYPCVILNVDVAKNNSNDQYQTLVDPVRKTYNSRSECSIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNHDGTIAELKGFEMKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVAAVANRWLDLLEGQGKDIADSELLDYISESSTMSKSLADYGQQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVAREPEGTPVSERAVPVAIFQTDDPEKKFYLQKWCKISSYTGIRSIIDWMYYKQRLHSAIQKVITIPAAMQKVANPVLRVRHPYWLEKKVCDKFRQGKIVDMFSSANKDHSTTQDNVVADIEEFCKENRPSVKGPKPVARSFEVDRNHSEGKQQESWDPEFHDISLQNVDKNVDYQGWLELEKRKWKMTLTNKKKRRYSSSLFGFDLEQNINKKVCKGRVGVGSYFRRPEEALTSSYLQIIQLVQSPQSGQFFAWVVVEGLMLKIPLTIPRVFYINSKASIAGNFTGKCINKILPHGKPCYNLMEVNIQEDQFIKESKKLAALLADPEIEGIYETKMPLEFSAICQIGCVCKIEDTAKHRNTQDGWKLGELHRITTTECRYLENSIPLVYLYHSTSTGRAVYVLYCHASKLMSVVVVNPYGDKELLSSALERQFRDRCQELSPEPFSWDGILFQVEYVDHPEAATKFLQKALCEYREENCGATVAVIECPDFNTTKEGVKALEDFPCVRIPFNDDDNSYQPVSWQRPAAKIAVLRCASAIQWLDRRIAQSRYAHVPLGNFGRDWLTFTVDIFLSRALRDQQQVLWVSDNGVPDLGDINNEETFLADETSLLFPGAYRKVSVELKVHRLAVNALLKSDLVSEMEGGGFLGVNSRGSSLNDNGSFDENNGCAQAFRVLKQLIKRLLHDACNSGNIYADSILQHLSWWLRSPSSKLHDPALHLMLHKVMQKVFALLLTDLRRLGAIIIYADFSKVIIDTGKFDLSAAKTYCESLLTVMGSRDIFKLILLEPVHYWHSLLFMDQHNYAGIRATGDEISGNEVTIEPKWSVARHLPEYIQKDFIIIVATFIFGPWKFALEKKRGSAESLEAEMVEYLKEQIGTRFISMIVEKIGNIRSHIKDINVSDASWASGQAPKGDYTFEFIQIITAVLALDQNVQQDVLVMRKILLKYIKVKECAAEAEFIDPGPSFILPNVACSNCGAYRDLDFCRDSALLTEKEWSCADPQCVKIYDKEQIESSIIQMVRQRERMYQLQDLVCNRCNQVKAAHLTEQCECSGSFRCKESGSDFHKRIEIFLDIAKRQKFRLLEECISWILFATSC", "sequence_length": 2138, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "09bc0f408c28b4be71ad327569587d19fa9d06cfc13f88c4a698ebcc1003fe4c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4IFN6.json", "taxon_id": "3702", "uniprot_accession": "F4IFN6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1744-pf08490.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08490", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1744-pf08490.yaml" } ], "pfam_ids": [ "PF03104", "PF08490", "PF22634", "PF22912", "PF23250" ], "protein_name": "DNA polymerase epsilon catalytic subunit A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLRSGGRRRADPGADGEASRDDGATSSVSALKRLERSQWTDKMDLRFGFERLKEPGEKTGWLINMHPTEILDEDKRLGSAVDYYFIQDDGSRFKVALPYKPYFYIATRKGCEREVSSFLSKKFQGKIAKVETVPKEDLDLPNHLVGLKRNYIRLSFHTVEDLVKVRKEISPAVKKNREQDHASDAYTALLSSVLQRGGVITDEEETSKKIADQLDNIVDMREYDVPYHIRLSIDLKIHVAHWYNVRYRGNAFPVEITRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEGPFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQEIGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCRMATEQPQTLATYSVSDAVATYYLYMKYVHPFIFALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIIFPNKQEQEFNKLTDDGHVLDSETYVGGHVEALESGVFRSDIPCRFRMNPAAFDFLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLKDVPSRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKPGANCQRKMAWQWRGEFMPASRSEYHRIQHQLESEKFPPLFPEGPARAFHELSREEQAKYEKRRLADYCRKAYKKIHITKVEERLTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLSAAVEVGDAAEVKRCKNMEVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCFTGANIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVFKTTNVKKPKVTISYPGAMLNIMVKEGFTNDQYQELAEPSSLTYVTRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGSTLEEVYGSVAKVADYWLDVLYSKAANMPDSELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYIISRKPEGSPVTERAIPLAIFQAEPTVRKHFLRKWLKSSSLQDFDIRAILDWDYYIERLGSAIQKIITIPAALQQVKNPVPRVKHPDWLHKKLLEKNDVYKQKKISELFTLEGRRQVTMAEASEDSPRPSAPDMEDFGLVKLPHPAAPVTVKRKRVLWESQEESQDLTPTVPWQEILGQPPALGTSQEEWLVWLRFHKKKWQLQARQRLARRKRQRLESAEGVLRPGAIRDGPATGLGSFLRRTARSILDLPWQIVQISETSQAGLFRLWALVGSDLHCIRLSIPRVFYVNQRVAKAEEGASYRKVNRVLPRSNMVYNLYEYSVPEDMYQEHINEINAELSAPDIEGVYETQVPLLFRALVHLGCVCVVNKQLVRHLSGWEAETFALEHLEMRSLAQFSYLEPGSIRHIYLYHHAQAHKALFGIFIPSQRRASVFVLDTVRSNQMPSLGALYSAEHGLLLEKVGPELLPPPKHTFEVRAETDLKTICRAIQRFLLAYKEERRGPTLIAVQSSWELKRLASEIPVLEEFPLVPICVADKINYGVLDWQRHGARRMIRHYLNLDTCLSQAFEMSRYFHIPIGNLPEDISTFGSDLFFARHLQRHNHLLWLSPTARPDLGGKEADDNCLVMEFDDQATVEINSSGCYSTVCVELDLQNLAVNTILQSHHVNDMEGADSMGISFDVIQQASLEDMITGGQAASAPASYDETALCSNTFRILKSMVVGWVKEITQYHNIYADNQVMHFYRWLRSPSSLLHDPALHRTLHNMMKKLFLQLIAEFKRLGSSVIYANFNRIILCTKKRRVEDAIAYVEYITSSIHSKETFHSLTISFSRCWEFLLWMDPSNYGGIKGKVSSRIHCGLQDSQKAGGAEDEQENEDDEEERDGEEEEEAEESNVEDLLENNWNILQFLPQAASCQNYFLMIVSAYIVAVYHCMKDGLRRSAPGSTPVRRRGASQLSQEAEGAVGALPGMITFSQDYVANELTQSFFTITQKIQKKVTGSRNSTELSEMFPVLPGSHLLLNNPALEFIKYVCKVLSLDTNITNQVNKLNRDLLRLVDVGEFSEEAQFRDPCRSYVLPEVICRSCNFCRDLDLCKDSSFSEDGAVLPQWLCSNCQAPYDSSAIEMTLVEVLQKKLMAFTLQDLVCLKCRGVKETSMPVYCSCAGDFALTIHTQVFMEQIGIFRNIAQHYGMSYLLETLEWLLQKNPQLGH", "sequence_length": 2286, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ddb271f30856142f250ab2c22ed7973e2a84537bd1a02df0c6c3625a98fee365", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/Q07864.json", "taxon_id": "9606", "uniprot_accession": "Q07864", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1744-pf08490.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08490", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1744-pf08490.yaml" } ], "pfam_ids": [ "PF00136", "PF03104", "PF08490", "PF22634", "PF22912", "PF23250" ], "protein_name": "DNA polymerase epsilon catalytic subunit 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDSSKGKVLQNTGKFVSENRTEGDDFFNEAGYRQSRENDKIDSKYGFDRVKDSQERTGYLINMHSNEVLDEDRRLIAALDLFFIQMDGSRFKCTVAYQPYLLIRPEDNMHLEVARFLGRKYSGQISGLEHITKEDLDLPNHLSGLQQQYIKLSFLNQTAMTKVRRELMSAVKRNQERQKSNTYYMQMLATSLAQSSAGSEDATLGKRQQDYMDCIVDIREHDVPYHVRVSIDLRIFCGQWYNIRCRSGVELPTITCRPDILDRPEPVVLAFDIETTKLPLKFPDAQTDQVMMISYMIDGQGYLITNREIISSNVDDFEYTPKPEFEGNFIVFNEENEMQLLQRFFDHIMEVRPHIIVTYNGDFFDWPFVETRAAVYDLDMKQEIGFSKLRDGNYLSRPAIHMDCLCWVKRDSYLPVGSQGLKAVAKAKLRYDPVELDPEDMCRMAVEQPQVLANYSVSDAVATYYLYMKYVHPFIFALNTIIPMEPDEILRKGSGTLCETLLMVEAYHAQIVYPNKHQSELNKLSNEGHVLDSETYVGGHVEALESGVFRADIPCRFRLDPAMVKQLQEQVDAVLRHAIEVEEGIPLEKVLNLDEVRQEIVQGLQGLHDIPNRLEQPVIYHLDVGAMYPNIILTNRLQPSAMVSDLDCAACDFNKPGVRCKRSMDWLWRGEMLPASRNEFQRIQQQLETEKFPPLFPGGPQRAFHELSKEDQAAYEKKRLTDYCRKAYKKTKLTKLETRTSTICQKENSFYVDTVRAFRDRRYEYKGLTKVAKASVNAAVASGDAAEIKAAKGREVLYDSLQLAHKCILNSFYGYVMRRGARWHSMPMAGIVCLTGSNIITKAREIIERVGRPLELDTDGIWCILPGSFPQEFTIHTSHEKKKKINISYPNAVLNTMVKDHFTNDQYHELRKDKENNLPKYDIRDENSIFFEVDGPYLAMVLPAAKEEGKKLKKRYAVFNFDGTLAELKGFEVKRRGELQLIKNFQSSVFEAFLAGSTLEECYASVAKVADYWLDVLYSRGSNLPDSELFELISENKSMSKKLEEYGAQKSTSISTAKRLAEFLGEQMVKDAGLACKYIISKKPEGAPVTERAIPLAIFQSEPSVRRHHLRRWLKDNTMGDADIRDVLDWNYYIERLGGTIQKIITIPAALQGLANPVPRVQHPDWLHKKMLEKNDVLKQRRINEMFTSRPKPKPLATEEDKLADMEDLAGKDGGEGAAGCPIVTKRKRIQLEEHDDEEAQPQATTWRQALGAPPPIGETRKTIVEWVRFQKKKWKWQQDQRQRNRQASKRTRGEDPPVVRATGSTATLGGFLRRAQRTLLDQPWQIVQLVPVDDLGHFTVWALIGEELHKIKLTVPRIFYVNQRSAAPPEEGQLWRKVNRVLPRSRPVFNLYRYSVPEQLFRDNSLGMLADLATPDIEGIYETQMTLEFRALMDMGCICGVQREEARRLAQLATKDLETFSIEQLEQRPQTQVKYLASANNRLRKIYLYQHNTPTAKKEIWSLILMPSKKAFVFALDTVRANQMPNMRQLYTAERLALLKNLTAEEQDKIPVEDYTFEVLIEVDVKQIYRHIQRALTTYKQEHQGPTILCLQTALSARKLSLAMPILLEFPQAEIHISDDASLLSGLDWQRQGSRAVIRHFLNLNNVLDLMLDQCRYFHVPIGNMPPDTVLFGADLFFARLLQRHNFVLWWSASTRPDLGGREADDSRLLAEFEESISVVQNKAGFYPDVCVELALDSLAVSALLQSTRIQEMEGASSAITFDVMPQVSLEEMIGTVPAATLPSYDETALCSAAFRVMRSMVNGWLREVSINRNIFSDFQIVHFYRWVRSSNALLYDPALRRSLNNLMRKMFLRIIAEFKRLGATIIYADFNRIILSSGKKTVSDALGYVDYIVQSLRNKEMFHSIQLSFEQCWNFMLWMDQANFSGIRGKLPKGIDETVSSIVSTTMIRDSERNQDDDEDEEEDSENRDPVESNEAEQDQEDELSLELNWTIGEHLPDENECREKFESLLTLFMQSLAEKKTTEQAIKDISHCAFDFILKLHKNYGKGKPSPGLELIRTLIKALSVDKTLAEQINELRRNMLRLVGIGEFSDLAEWEDPCDSHIINEVICKACNHCRDLDLCKDKHRAMKDGVPVWLCAQCYVAYDNEEIEMRMLDALQRKMMSYVLQDLRCSRCSEIKRENLAEFCTCAGNFVPLISGKDIQTLLGTFNKVAANHKMQLLQQTVHQALTTPR", "sequence_length": 2236, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "340f7b1cc78841145d3eca0f70ed169e82f8e5b9ebe79263eb04559a2eef8bf2", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VCN1.json", "taxon_id": "7227", "uniprot_accession": "Q9VCN1", "uniprot_release": "2026_03" } ], "pfam_id": "PF08490", "short_name": "DUF1744", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fist-pf08495.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08495", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fist-pf08495.yaml" } ], "pfam_ids": [ "PF08495", "PF10442" ], "protein_name": "Uncharacterized protein Mb0898c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRIGVGVCTTPDARQAAVEAAGQARDELAGEAPSLAVLLGSRAHTDRAADVLSAVLQMIDPPALVGCIAQAIVAGRHEIEDEPAVVVWLASGLAAETFQLDFVRTGSGALITGYRFDRTARDLHLLLPDPYTFPSNLLIEHPNTDLPGTAVVGGVVSGGRRRGDTRLFRDHDVLTSGVVGVRLPGMRGVPVVSQGCRPIGYPYIVTGADGILITELGGRPPLQRLREIVEGLSPDERALVSHGLQIGIVVDEHLAAPGQGDFVIRGLLGADPSTGSIEIDEVVQVGATMQFQVRDAAGADKDLRLTVERAAARLPGRAAGALLFTCNGRGRRMFGVADHDASTIEELLGGIPLAGFFAAGEIGPIAGRNALHGFTASMALFVDDME", "sequence_length": 386, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cdfdf82afc8b0a7811a8edbdddf74002e85a86d7d884b608499ae3674de7fd0d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A5D4.json", "taxon_id": "233413", "uniprot_accession": "P0A5D4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fist-pf08495.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08495", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fist-pf08495.yaml" } ], "pfam_ids": [ "PF08495", "PF10442" ], "protein_name": "Uncharacterized protein Rv0628c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRIGVGVSTAPDVRRAAAEAAAHAREELAGGTPALAVLLGSRSHTDQAVDLLAAVQASVEPAALIGCVAQGIVAGRHELENEPAVAVWLASGPPAETFHLDFVRTGSGALITGYRFDRTAHDLHLLLPDPYSFPSNLLIEHLNTDLPGTTVVGGVVSGGRRRGDTRLFRDRDVLTSGLVGVRLPGAHSVSVVSQGCRPIGEPYIVTGADGAVITELGGRPPLHRLREIVLGMAPDEQELVSRGLQIGIVVDEHLAVPGQGDFLIRGLLGADPTTGAIGIGEVVEVGATVQFQVRDAAAADKDLRLAVERAAAELPGPPVGGLLFTCNGRGRRMFGVTDHDASTIEDLLGGIPLAGFFAAGEIGPVAGHNALHGFTASMALFVD", "sequence_length": 383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "611bf7e0d2ad563425008cf2847c54591bd5e1fc56f0d0f71641f0ff0e1a9287", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKS7.json", "taxon_id": "83332", "uniprot_accession": "P9WKS7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fist-c-domain-ipr019494.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019494", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fist-c-domain-ipr019494.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fist-domain-n-terminal-ipr013702.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fist-domain-n-terminal-ipr013702.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transcription-regulator-trmb-n-terminal-ipr002831.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transcription-regulator-trmb-n-terminal-ipr002831.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trmb-pf01978.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trmb-pf01978.yaml" } ], "pfam_ids": [ "PF01978", "PF08495", "PF10442" ], "protein_name": "Uncharacterized protein MJ1623", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIYIHKKIKNPIKDGIEIGEEIKRNVGRASLIIFITSILERDKLKQVFDGMKQHIPLDNLIGCSTGGTFSGKDYIKEDGVLILAFDEYYKSAISCEKVDREAEYVGKKIADKIKTCIRDKYPKLDIDDNFLGFVFFDWNVDSEQEILDVLGRELTIPIIGGTAADDGSFDKFFQIYKGEVVKDCCVFGVVGGKLKFDLIYGHGYEPTDIYARVTKAEGKVVYELDGKPAYQRYLEMLSEYTKLPMDIIKKYFYRDLRRLDFYLVHPLGFMDINGNYITAFLERVEENTLVFRRDILEGSFLVLMKTDIEKQVKSIVDELKKAEDFENPLIFINECYGREVLKNSMFREFEEDILKYFLNFYKAGKKVEEYVIEDNCIGWLSYGETIAKDLIRFHNNLSFTGVIFELSQSSNINWREELKNFNFEDDEIEVIVNLINKQLTAKELLQLTNLSQTKLYHILNKLEKEGIIKSVSGKPKLYYIDNIKEILQKTHEKIEHENMVKKIKRKKLLRLL", "sequence_length": 512, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "982b84ce79fdb8a554c2fbd87b3468095668d29fd6c6e5f560841a1cf14867f1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q59017.json", "taxon_id": "243232", "uniprot_accession": "Q59017", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fist-c-pf10442.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10442", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fist-c-pf10442.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fist-pf08495.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08495", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fist-pf08495.yaml" } ], "pfam_ids": [ "PF00563", "PF00990", "PF08495", "PF10442" ], "protein_name": "Cyclic di-GMP phosphodiesterase CdpA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFTVSRLIPDLASANQVLETMDLPHGQSILVQIFSPLSREHVVQLARLIRSRHPQACLLGCSTEEVIFQGEVHHQVTLLQITVFEQTYLSRAVVDYSDDEAADAERLARQLELTSMSRAVVCFSWQMDTLQVARFALRDTQGAPVPVAGGAAKQTPSGRWVLLDEACYQNASVAIALHGEALYVETGGYTEWQPVGRTYRVTAVEGDRVLRLDDEPIEAIYQRNLGAQADLPHDWLISFPLMKGECRHQDLYLPLGLAEEGGLRFNRPLALQDEVRFCFDHPSLTLERVYLTAQQLQAKQCQQVWVFNCALRLNFMHENHELQPLQAVAPTDGCYCWGELLYEHGQQQVMHHSMTFLALREGAVRDDLVPIPLPSYPEGMTSPLFNLIRHAFHDLDAMTDNLAQQIRAQTSLLTASYRRDRRTGLPNRVVLRERLANFAANEHLIALKVTNFNQINEKYGYPVGDKLLRDLSEQFQVFLDQKLAGQSGLYAIGVGEWATVFRAKLDGKSIHSHFYQFVEQLEHVNFEPYGLPNVDYLSISLCAGLVSQGDFAEHSPDELLLRAIEARRYAFNNNHHFCNAARLKVQESVRQERLNWLSRVSRAVVRDDVVVYAQPICQARSHIVASYECLVRIEDEGEIILPGNFLPIITDTHLYTRLSRQMITHTFNMMRHRPEAFSINLSPQDLMSERTLQHLEAAIKSVADPARVGLEVLESEQIKDYGRMIEVCNHFRTLGATIIVDDFGSGYSNIDEIVKLEPQVIKLDGSLIRNIDQDVKQRRIAEQLVKLCQVLNAKTVAEFVHNQTVCRISEDMGVDYLQGYFLGRPSRLG", "sequence_length": 829, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1310492702e8c3da8992ceffcdffe062cd33827fad727a52e25cf681962f37ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9KVL2.json", "taxon_id": "243277", "uniprot_accession": "Q9KVL2", "uniprot_release": "2026_03" } ], "pfam_id": "PF08495", "short_name": "FIST", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1746-pf08508.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08508", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1746-pf08508.yaml" } ], "pfam_ids": [ "PF08508" ], "protein_name": "DSC E3 ubiquitin ligase complex subunit D", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTPDAFRDAEYIADVSGISYGNVANLTEQDANVVPRENERMRKLQLAAKVAFIDRLLRDLDILIYCELSALYYMDCSVILFAIRAIVQLIFFTPKAPPFDPTRNQPFIGAIFVSNIFCMIFHNFFTHPEASEATRGYLHGGLLIDFIGQKAPIPLFRLFLLDFLVLILDLVMLGLIVERVKTTGQTSTTSTEILRVQDHDSEERGVHRTRPESRSSVVGAELDETDGHITRANAGVGEQAEHTQLLADPSEDGHTPGAKNSHPLDAFSSGEAVIMNLGLFDVIRDQWKYSTTAPPARTSSYIPSDQTAAFLRARFGLQVGPDGRVQRIQS", "sequence_length": 331, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7c52034b6535df9843fa98c3169eaf2fdc4214779f6bd39b1d27024cee0d1e4f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B0XYF7.json", "taxon_id": "451804", "uniprot_accession": "B0XYF7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1746-pf08508.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08508", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1746-pf08508.yaml" } ], "pfam_ids": [ "PF08508" ], "protein_name": "DSC E3 ubiquitin ligase complex subunit 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTIVLDQRGEVFSFFRSLDMLCYAIIAQQYFQDPTVLLLLLKVFVQLSYLTPKPFSQLNALPLFYPLLLNFLISLMVRMFFNLPTAGESLDGYLYGGSIINFIGEKNESSRIDFITSDLVLFCLQIFMALILIASNKRPTQASHIQASQSGLSNVDGDEEPSDLITEDSRDTQQGQRQEDLQRQLENERSRLIARFSHSLYSFQHGLSFGSPQNRNTPLQRQSADSYSTPVCIEVDSEDWKDLVWKSQYATENANTNSINNSPLSSNTTGVPNSVLTNPI", "sequence_length": 281, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2f2daab2e20f6d37a18f33a5c127941c57f6e8fdd7eb3990db3c9ce6ec183b99", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O14175.json", "taxon_id": "284812", "uniprot_accession": "O14175", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/dsc-e3-ubiquitin-ligase-complex-go0044695.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044695", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/dsc-e3-ubiquitin-ligase-complex-go0044695.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/egad-pathway-go0140624.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140624", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/egad-pathway-go0140624.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1746-ipr013715.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1746-ipr013715.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1746-pf08508.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08508", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1746-pf08508.yaml" } ], "pfam_ids": [ "PF08508" ], "protein_name": "Golgi/endosome-localized DSC protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDNFESTAEGNLSIGNKRVYELRKRNFQRNLVNNLSFLGYVLISLEYIKYDRTVWTLITRAIVQSLISSPFPSDAKLRRLATLGADNNTTGVATLPGGRSIRFPGMFGTEMLYNSSSEAEQQDHDDTAIVSMKKQIRKFLFHGCLSLNMLFIILTILFPIDFFEPLSGSEPVDDGPKNTPSPFSNSDGLLLGERRGGLFLQMIGERLPKSNFSGNLGLVMFEFSILIVQFTLFSLTCVVLADLDFEEPERLEPVNSDGYDGSVIVARIPLNKTMNAILNDGNINDNNENASNSV", "sequence_length": 294, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "42811cf94fecdd6880eecacef56e3860b247301c25049c54f2e3e542ee344cb6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06104.json", "taxon_id": "559292", "uniprot_accession": "Q06104", "uniprot_release": "2026_03" } ], "pfam_id": "PF08508", "short_name": "DUF1746", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 10, "discovery_scanned": true, "example_count": 10, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rttp106-like-middle-pf08512.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rttp106-like-middle-pf08512.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O01683", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00505", "PF03531", "PF08512", "PF17292", "PF21103" ], "protein_name": "FACT complex subunit ssrp1-B", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "5c28032bb0497941de2bb996c57e54dea895ef01797aac3af33cc9f4971d3f8e", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTELKFKGVYVEDIGHLTCGTLTLTENSINFIGDKGGKSVYITGTDVDKLKWQKLGNKPGLRVGLSDGGAHRFGGFLDDDLQKIQSFTSSNWSKSINQSNLFINGWNYGQADVKGKNIEFSWENEPIFEIPCTNVSNVIANKNEAILEFHQNEQSKVQLMEMRFHMPVDLENEEDTDKVEEFKKAVLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPVKTINRLFLVPHKDGRQVYFVLSLNPPIRQGQTHYSYLIFEFGKDEEEDLELSLTDEQLDYFNGNLQREMTGPIYETISILFKSICNLKVTVPGRFLGSSGTPAIQCTHRQNLGLLYPMEKGFLFIQKPVMYIRFEEISSCHFARSDSGTVTRTFDFEIDLKTGSSLTFSAMDKEENNKLFDYLNKKEIKIRNSHRIDNKSAGYGSSDEDDIDPYKSTVKAEGREQDDDSDDESTDEDYDLDKDMKKQKNDKDSSEGSGSEPDDEYDSGSEKDASGTGESDPDEENIEPKKKESKEKKNKREKKEKPVKEKAVKKGKKTKDPNEPKRATTAYIIWFNANRNSMKEDGDTLGDVAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYKKNGGGVEKASGPSTKKSSDQSPGKQFKSKEHISDTDDSDDDEPLKAKKDESDAASESSGESD", "sequence_length": 689, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "5c28032bb0497941de2bb996c57e54dea895ef01797aac3af33cc9f4971d3f8e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O01683.json", "taxon_id": "6239", 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"69ddfcc58d2e5c1b58546a7c2f81500554de81b877dba31e390fcf645c827b58", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/histone-chaperone-rtt106-regulator-of-ty1-transposition-protein-106-n--cd11604.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/pleckstrin-homology-like-domain-repeat-1-of-histone-chaperone-rtt106-r-cd13303.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13303", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/pleckstrin-homology-like-domain-repeat-1-of-histone-chaperone-rtt106-r-cd13303.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/pleckstrin-homology-like-domain-repeat-2-of-histone-chaperone-rtt106-r-cd13304.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13304", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/pleckstrin-homology-like-domain-repeat-2-of-histone-chaperone-rtt106-r-cd13304.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/histone-chaperone-rtt106-fact-complex-subunit-spt16-like-middle-domain-ipr013719.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013719", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/histone-chaperone-rtt106-fact-complex-subunit-spt16-like-middle-domain-ipr013719.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/histone-chaperone-rtt106-n-terminal-domain-ipr040993.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040993", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/histone-chaperone-rtt106-n-terminal-domain-ipr040993.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rtt106-pleckstrin-homology-domain-ipr040770.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040770", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rtt106-pleckstrin-homology-domain-ipr040770.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ph-18-pf18469.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ph-18-pf18469.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rtt106-n-pf18215.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18215", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rtt106-n-pf18215.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rttp106-like-middle-pf08512.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rttp106-like-middle-pf08512.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/histone-chaperone-rtt106-n-terminal-domain-superfamily-ipr044891.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR044891", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/histone-chaperone-rtt106-n-terminal-domain-superfamily-ipr044891.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-30-29-120-2-30-29-120.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.30.29.120", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-30-29-120-2-30-29-120.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/rtt106-like-6-10-10-70.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.10.10.70", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/rtt106-like-6-10-10-70.yaml" } ], "pfam_ids": [ "PF08512", "PF18215", "PF18469" ], "protein_name": "Histone chaperone RTT106", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKLFLDELPESLSRKIGTVVRVLPSSLEIFEELYKYALNENSNDRSGRHKKPRIDVSSDLLKTDEISETNTIFKLEGVSVLSPLRKKLDLVFYLSNVDGSPVITLLKGNDRELSIYQLNKNIKMASFLPVPEKPNLIYLFMTYTSCEDNKFSEPVVMTLNKENTLNQFKNLGLLDSNVTDFEKCVEYIRKQAILTGFKISNPFVNSTLVDTDAEKINSFHLQCHRGTKEGTLYFLPDHIIFGFKKPILLFDASDIESITYSSITRLTFNASLVTKDGEKYEFSMIDQTEYAKIDDYVKRKQMKDKSMSEELKAKSKSKGQATDGTADQPSILQEATRQMQDEKKAGVFSDDDEENDQNFEAESDLSDGSGQESSDGAEDGEEAEEDDEEDDEEEDKKGQSALNRDNSFASINGQPEQELQYKEFKEPLELEDIPIEIDNDDDEDDEDGSGVEYD", "sequence_length": 455, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2c223e339592173642204c21cfb1da700b08ebfea20f0258e2ffc6e61344ccbe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40161.json", "taxon_id": "559292", "uniprot_accession": "P40161", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rttp106-like-middle-pf08512.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rttp106-like-middle-pf08512.yaml" } ], "pfam_ids": [ "PF00505", "PF03531", "PF08512", "PF17292", "PF21103" ], "protein_name": "FACT complex subunit SSRP1-A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAELQFPGVYVEDVGHLAFGTLKLTEKSLNFKGDKGGKSVNVTGSDIDKLKWQKLGNKPGLRVGLNDGGAHRFGGFKDTDLEKIQSFTSSNWSQSIDQSNLFIKGWNYGQAEVKGKTVEFSWEDKPIFEIPCTNVSNVIANKNEAVLEFHQNDDSKVQLMEMRFHMPIDLENEEDADKVEEFKKAVLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPIKSINRLFLVPHKDGRHVYFVLSLNPPIRQGQTRYSYLIFEFGKDEEQDLELALTDEQLESSNGNLRRDMTGPIYETISILFKSICNLKITVPGRFLGSSGTPAIQCTHRQNPGLLYPMEKGFLFIHKPAMYIRFEEISSCHFARSDSGTVTRTFDFEIDLKYGGPLTFNAMEKEENNKLFDYLNKKNIKIRNSQRVENTVADSSDDEIDPYKAAVTAEGRQRDDSDDDSTDEDYDLDKDIKKKKEDKESSEGTGSEPDDEYDSGSEQDSSGTGESEPDSEQDVPSKRRKGEPKEKREKKEKREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRNELKEDGDSVADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEYRKNGPPSSSSKPSSSKTSKKSSGPSSSKAISKEYISDSDDSDDEEPKKKEKKAAPKEESEESNNGSDGSDESDDSD", "sequence_length": 697, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ee40ee458ddb6f4e99580bfa8fac12c58098d2e7e4ae96ebd426a3f847af3f08", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41848.json", "taxon_id": "6239", "uniprot_accession": "P41848", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rttp106-like-middle-pf08512.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rttp106-like-middle-pf08512.yaml" } ], "pfam_ids": [ "PF00505", "PF03531", "PF08512", "PF17292", "PF21103" ], "protein_name": "FACT complex subunit SSRP1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADGHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSNQLGVKTKDGLYYKFVGFRDQDVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLTFLVGSKQAFEVSLADVSQTQLQGKNDVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQFVGDENRPPSQVFNDTIVAMADVSPGVEDAVVTFESIAILTPRGRYNVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTMYPHIVMQFETDTVVESELSISDELMNTKFKDKLERSYKGLIHEVFTTVLRWLSGAKITKPGKFRSSQDGFAVKSSLKAEDGVLYPLEKGFFFLPKPPTLILHDEIDYVEFERHAAGGANMHYFDLLIRLKTDHEHLFRNIQRNEYHNLYTFISSKGLKIMNLGGAGTADGVAAVLGDNDDDDAVDPHLTRIRNQAADESDEEDEDFVMGEDDDGGSPTDDSGGDDSDASEGGVGEIKEKSIKKEPKKEASSSKGLPPKRKTVAADEGSSKRKKPKKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQPMNVDSGNDSDSN", "sequence_length": 646, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d0d5ecdd58ed2d18d540218a2aaeac4dd4e84259f2e0c9fa95a35810148a3040", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q05153.json", "taxon_id": "3702", "uniprot_accession": "Q05153", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rttp106-like-middle-pf08512.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rttp106-like-middle-pf08512.yaml" } ], "pfam_ids": [ "PF00505", "PF03531", "PF08512", "PF17292", "PF21103" ], "protein_name": "FACT complex subunit Ssrp1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDSLEYNDINAEVRGVLCSGRLKMTEQNIIFKNTKTGKVEQISAEDIDLINSQKFVGTWGLRVFTKGGVLHRFTGFRDSEHEKLGKFIKAAYSQEMVEKEMCVKGWNWGTARFMGSVLSFDKESKTIFEVPLSHVSQCVTGKNEVTLEFHQNDDAPVGLLEMRFHIPAVESAEEDPVDKFHQNVMSKASVISASGESIAIFREIQILTPRGRYDIKIFSTFFQLHGKTFDYKIPMDSVLRLFMLPHKDSRQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIELPFSEAELRDKYEGKLEKEISGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKAAAGYLYPLERGFIYIHKPPLHIRFEEISSVNFARSGGSTRSFDFEVTLKNGTVHIFSSIEKEEYAKLFDYITQKKLHVSNMGKDKSGYKDVDFGDSDNENEPDAYLARLKAEAREKEEDDDDGDSDEESTDEDFKPNENESDVAEEYDSNVESDSDDDSDASGGGGDSDGAKKKKEKKSEKKEKKEKKHKEKERTKKPSKKKKDSGKPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELKDKSKWEDAAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKSSKKRKTEPSPSKKANTSGSGFKSKEYISDDDSTSSDDEKDNEPAKKKSKPPSDGDAKKKKAKSESEPEESEEDSNASDEDEEDEASD", "sequence_length": 723, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "932d744192a102d6f7a614111194152569fa76e1de15b74e2867c1e0c930ce91", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q05344.json", "taxon_id": "7227", "uniprot_accession": "Q05344", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fact-spt16-nlob-pf14826.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14826", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fact-spt16-nlob-pf14826.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rttp106-like-middle-pf08512.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rttp106-like-middle-pf08512.yaml" } ], "pfam_ids": [ "PF00557", "PF08512", "PF08644", "PF14826", "PF21091", "PF24824" ], "protein_name": "FACT complex subunit spt16", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSFVLDKEAFVRRVKRLYTEWRAPSIGHDDALRNLDCIMSIVGVEEDVMYSKSMALQLWLLGYELTDTISVFCSDAVYFLTSKKKIEFLKQTQNITEEGFPEINLLVRDRTDKDQGNFEKLIKALQNSKKGKRLGVFAKDAYPGEFSEAWKKSLTASKFEHVDISTIIAYLMCPKDESEINNIRKASLVSMDIFNKYLKDEIMDIIDSDRKVKHNKLSDGCEAAIGEKKYTSGLDPRLLDMAYPPIIQSGGAYSLKFSAVADKNPLHFGVIVCSLGARYKSYCSNISRTFLVNPTEAMQENYTFLVSVQEEILKLLVPGTKLCDVYEKTLDFVKKEKPSMVDNLPKSFGFAMGLEFRENSIVIGPKCQALLKKNMVFNLHVGISNLTNPEATDKEGKNYALFIGDTVLVGEQSPASVMTPSKKKIKNVGIFIKDDSDEEDVDDKKTAKEDQGTEILGRSKRNAVLESKLRNEINTEEKRKEHQRELAQQLNERAKDRLARQGNSKEVEKVRKNTVSYKSISQMPREPEVKELKLYVDKKYETVIMPVFGIQVPFHISTIKNISQSVEGEYTYLRINFFHPGATMGRNEGGLYPQPEATFVKEVTYRSSNVKEHGEVGAPSANLNNAFRLIKEVQKRFKTREAEEREKEDLVKQDTLILSQNKGNPKLKDLYIRPNIVTKRMTGSLEAHSNGFRYISVRGDKVDILYNNIKSAFFQPCDGEMIILLHFHLKYAIMFGKKKHVDVQFYTEVGEITTDLGKHQHMHDRDDLAAEQAERELRHKLKTAFKSFCEKVETMTKSVVEFDTPFRELGFPGAPFRSTVTLQPTSGSLVNLTEWPPFVITLDDVELVHFERVQFHLRNFDMIFVFKEYNKKVAMVNAIPMNMLDHVKEWLNSCDIRYSEGVQSLNWQKIMKTITDDPEGFFEQGGWTFLDPESGSEGENETAESEEDEAYNPTDAESDEESDEDSEYSEASEDSEESDEDLGSDEESGKDWSDLEREAAEEDRNHDYAADDKPRNGKFDSKKHGKSSKHSPSKSSKDKYNSRDKHHSSSSSGNKSSSKDKDRKRSRDDSRDNGHKSKKSRH", "sequence_length": 1083, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e8cda6dc5b2892e8c3bd9f6616ef2695ef2b7d004a5db6b29486027ae1c7a056", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IRG6.json", "taxon_id": "7227", "uniprot_accession": "Q8IRG6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fact-spt16-nlob-pf14826.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14826", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fact-spt16-nlob-pf14826.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rttp106-like-middle-pf08512.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rttp106-like-middle-pf08512.yaml" } ], "pfam_ids": [ "PF00557", "PF08512", "PF08644", "PF14826", "PF21091", "PF24824" ], "protein_name": "FACT complex subunit spt-16", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGKRAVLNKDLFFQRAERLYEHWEKGADGLDSIKSLAFVYGETDNPYTKTSALFTWLFGHEIADTVLLLLKDHIYILGSNRKVEFFGSVTGDNQSSGKVPTVSTLLRDKTDKDAGNFEKLIDHIKSAGGDVGNFVKEKFSSEFVSSWNKALEEGGVNKNDVTLAFTHLFAVKDDKEMDLIRKSAQATTASWTAARARYVEIIDQEKRVRHSVLSNEFAAFMKDSKVQQALAKYEADTCYDPIVMSGGNYSFKWNHESSESHLHSQFGTIITSFGARLSEYCTNLTRTMLIFPSSELETAYEAILAAELAVIAALKPGAKLSDVYKIGIDTLTEKSPKLAETLNKKELGFATGIEFRESRLAISAKCDEVVKAGMVFIVYIGVDSIPNKNKGEKGKPAAIAISDTILVKEEGDNEILTEKAKSRLKSNVIKFKEEQENREAEKDNDQKKMLGRGQRSVVLTDQTRNKTTNEELRKERQKELGVQLNELAKARLSKQGGGTDEKKSKKSNVSYKTEERFPQDADVQKMLIFVDRKYDSVVVPIFGIPVPFHISMIKNCSQSVEGDFTYLRINFATPGSQVGKDSGQFPHPLAHYMKELTFRASNIKDHHSDSTAPSHNLSTAFRLIKEMQKRFKTEEAEEREKEGAVKQDKLILSQNKLNPKLKDLLIRPNIIQKRITGSLEAHTNGFRYTSLRGDRIDVLYNNIKHAFFQPCDNEMIILLHFHLKNPVLWGKKKYKDVQFYTEVGEITTDLGKYHHMQDRDDMQSEQQEREMRRRLNAAFNSFCEKVSRLTNDQFEFDSPFAGLGFFGVPYRSATTLKPTASCLVNLTEWPTFIVTLSEVELVHFERVSLQLKNFDMVFIFKDYKIKPQMVAQIPMSSIDKIKEWLHTCDIWYSEGIQSLNWAKVMKTITDDLEAFFEEGGWSFLNVESDNEEAMDDSDDSDAYDPEEEDASAGSGSESDEDESEGEETESDDDDEGSLDSDESEGKDWSDLEEEAANADKRREVEEPSRDRDRKRPHSSKSGPSHKRRK", "sequence_length": 1030, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dbb6549c5f30d2c7475749fcfe9aa0e98e677e8eccf4efbe1ee2fcb97cd3b005", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9N5R9.json", "taxon_id": "6239", "uniprot_accession": "Q9N5R9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fact-spt16-nlob-pf14826.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14826", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fact-spt16-nlob-pf14826.yaml" } ], "pfam_ids": [ "PF00557", "PF08512", "PF08644", "PF14826", "PF21091", "PF24824" ], "protein_name": "FACT complex subunit SPT16", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVTLDKDAYYRRVKRLYSNWRKGEDEYANVDAIVVSVGVDEEIVYAKSTALQTWLFGYELTDTIMVFCDDKIIFMASKKKVEFLKQIANTKGNENANGAPAITLLIREKNESNKSSFDKMIEAIKESKNGKKIGVFSKDKFPGEFMKSWNDCLNKEGFDKIDISAVVAYTIAVKEDGELNLMKKAASITSEVFNKFFKERVMEIVDADEKVRHSKLAESVEKAIEEKKYLAGADPSTVEMCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFKSYCSNLVRTLMVDPSQEVQENYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKKQKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATVLTSVKKKVKNVGIFLKNEDEEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKELAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNPSLMPKEPHIREMKIYIDKKYETVIMPVFGIATPFHIATIKNISMSVEGDYTYLRINFYCPGSALGRNEGNIFPNPEATFVKEITYRASNIKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAEEGDSESEIEDETFNPSEDDYEEEEEDSDEDYSSEAEESDYSKESLGSEEESGKDWDELEEEARKADRESRYEEEEEQSRSMSRKRKASVHSSGRGSNRGSRHSSAPPKKKRK", "sequence_length": 1047, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc761b9decfc5340db8140fb8a251aaff7e74f2d4da8b0d396a4f1ac97e3beec", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y5B9.json", "taxon_id": "9606", "uniprot_accession": "Q9Y5B9", "uniprot_release": "2026_03" } ], "pfam_id": "PF08512", "short_name": "Rttp106-like_middle", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mitofissin-pf08520.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08520", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mitofissin-pf08520.yaml" } ], "pfam_ids": [ "PF08520" ], "protein_name": "Mitofissin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLVGKLVHISIDLVLVSTCLAGIKRNTGLTPKLETLDNQTMRNYMKRYLNLGESVYDYSVATCGSSTYFARK", "sequence_length": 73, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "573db0c8fd26c26ebeeee403f5f2eabf02ba324116366b7b67020d13bada17b4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2V2P4.json", "taxon_id": "559292", "uniprot_accession": "Q2V2P4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mitofissin-pf08520.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08520", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mitofissin-pf08520.yaml" } ], "pfam_ids": [ "PF08520" ], "protein_name": "Uncharacterized protein YKL018C-A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLGMIRWVVEGTLVAMLLSAIRRETGMIFFYNQYQLGGWIHRYLSWGEMCYTRTLKMVKRSKFFRKQLNEDGFGRINDSGPKRRGRDQSQYSSRFVELD", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "85d30440238bc2891ce128a7bf300dcecd17588c1c95188955d5c29ea79b24ca", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3E7A7.json", "taxon_id": "559292", "uniprot_accession": "Q3E7A7", "uniprot_release": "2026_03" } ], "pfam_id": "PF08520", "short_name": "Mitofissin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08522", "short_name": "BT_3987-like_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1749-pf08538.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08538", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1749-pf08538.yaml" } ], "pfam_ids": [ "PF08538" ], "protein_name": "Fusarinine C esterase sidJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYSKFWPKGGLPGILHHYTETLVTFEYTTTTTRKPHSLLFVGGLGDGLATTSYLADLAHALQPTEWSLFTLTLTSSYQSWGLGHLDRDTNEIAQCLKYIKEYKTEKFGGSASSGKIVLMGHSTGSQCVLHYLSRPNPHTHTPAFDPYLEHVERMPLDGAIMQAPVSDREAIQWVLAEGLGDRTPAEIRPVFEKLTSMAREAARDADAGTDVLLPLAMTSLVYPAHTPLSARRFLSLTSPESPESPSEDDLFSSDLSDEQLGKTFGMIREQGLLRGKLMVLFSGADQSVPAWVDKDTLLSRWRNATDHNGEAAIWDENSGIIPNASHALSNDDQAEPRNFLVNKVLGYLSALVKA", "sequence_length": 354, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d8a8a054f7122443f32549985cc573f5bc27146700a1a52bc432b3fa24e4051d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4WF56.json", "taxon_id": "330879", "uniprot_accession": "Q4WF56", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1749-pf08538.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08538", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1749-pf08538.yaml" } ], "pfam_ids": [ "PF08538" ], "protein_name": "Esterase AN6793", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRIRPSPPKKPTPGLLHEYADRLVAFEYSASKGLKPHTLLFISGLGDGLGTVAYLEDIVAALEGSQWSVFSPVISSSYGGWGTSGLGRDTDEMARCIEYIQKYKEGSGVHETERKIVIMGHSTGSQDVLTYISSPNPRHPQPGLDPGHGHRHKRMPPLRPQVDGAIMQAPVSDRQAIQTVLEEGNERHSAKYMRKVVNDAIAYAKKHTYEDYDSLDTIIPLPITAAIGYPASTAVSSRRFLSLTSPDSPDSPGEDDLFSSDLTDERLRKTFGMVRHRGVLKDQKGLLVLYSGNDPSVPAFVDKEGLLRRWRWATDADEKRAYWHGESGIIPGATHTLEGPGQVEQRKELVRRVWMFLADVEGDPRTSCHSARPLS", "sequence_length": 375, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c43990e55577c307e91244a61149e87aee5082c6f4cd103760d32bb06cd173f3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5AY37.json", "taxon_id": "227321", "uniprot_accession": "Q5AY37", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1749-pf08538.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08538", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1749-pf08538.yaml" } ], "pfam_ids": [ "PF08538" ], "protein_name": "UPF0613 protein PB24D3.06c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSASHPGILHEYTERLVAFELVGKSNVTLTSNVTRSLLLFVGGLGDGLLTVPYVQELVNPLDEIGWSIVQVQTQSSYIGWGTGSLKRDDEDLHKAVDYFLHIGGADFSTRKIVLMGHSTGSQNVLYYLTQSILPNYLIAGIAQAPVSDREAAYQFNGKEKTKELVDWVKAEYLDKGLGNDVLPRSKVENFFGEVPTSANRCIDLTDVRGNDDFFSSDLSADDFAKTFGNLKEISGSTAHSQLILLMSERDEFVSPSTDKAQLLNRFRESIRPTTSNSSLSGIIPGATHNVGPKSSPEALKWLINQLITALRSFIDQ", "sequence_length": 316, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aa1ba47c344331a79a132790698e0f5dca12bef63e333fb2a13a95d516ce0058", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9C0Y8.json", "taxon_id": "284812", "uniprot_accession": "Q9C0Y8", "uniprot_release": "2026_03" } ], "pfam_id": "PF08538", "short_name": "DUF1749", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08549", "short_name": "SWI-SNF_Ssr4_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 9, "discovery_scanned": true, "example_count": 9, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus oryzae (strain ATCC 42149 / RIB 40)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/area-n-pf07573.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07573", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/area-n-pf07573.yaml" } ], "pfam_ids": [ "PF00320", "PF07573", "PF08550" ], "protein_name": "Nitrogen regulatory protein areA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGLTLGRGPGGVRPTQTATFTTHHPSADADRSSNNLPPTSSQLSDDFSFGSPLSPADSQAHDGLLQDSLFPEWGSGAPRPGIDSPDEMQRQDPLATQIWKLYSRTKAQLPNQERMENLTWRMMAMSLKRKERERAQQSMFPARRGSAGPSGIAQLRISDPPVATGNPQSTDLTADPMNLDDFIVPFESPSDHPSPSAVKISDSTASAAIPIKSRKDQLRDSTPVPASFHHPAQDQRKNSEFGYVPRRVRKTSIDERQFFSLQVPTRKRPAESSPQVPPVSNSMLAHDPDLASGVPDYALDAPSSAFGFHQGNHHPVNHHNHTSPGAPFGLDTFGLGDDPILPSAGPYQSQFTFSPSESPMASGHPFANLYSHTPVASSLNSTDFFSPPPSGYQSTASTPQPTYDGDHSVYFDMPSGDARTQRRIPNYISHRSNLSASLQPRYMFNQNNHEQASSSTVHSPSYPIPQPQHVDPTQVLNATNYSTGNSHHTGAMFSFGADSDNEDDDGHQLSERAGLAMPTEYGDEDGFSSGMQWDGQFPGSFHSLPGFGPQHRKHVTIGSTDMMDTPEEWNHGGSLGRTHGSVASVSEVRNREQDPRRQKIARTTSTPNTAQLLRQSMHSNNNTSHTSPNTPPESALSSAVPSRPASPGGSKNGDQGSNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNRSSANSLAVGTSRASKKTARKNSVQQASVTTPTSSRAQNGTSFESPPAGFSAAAGRSNGVVPIAAAPPKAAPSAAASPSTGQTRNPIQAAPKRQRRLEKATEMETDEANKSAGGRSKVVPLAPAMPPAAANPANHSIAGGQGASQEWEWLTMSL", "sequence_length": 866, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4cd3a6cea97b69c20c86c7d1e74230d2c611b29ab0929fc81a55f796a7824b94", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O13415.json", "taxon_id": "510516", "uniprot_accession": "O13415", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Penicillium roqueforti", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/area-n-pf07573.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07573", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/area-n-pf07573.yaml" } ], "pfam_ids": [ "PF00320", "PF07573", "PF08550" ], "protein_name": "Nitrogen regulatory protein areA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDGIHHGGHGRARPSHPMAFPDFDADSHMMSDDFSLDTPFSPSGSSNANDTVLGNSIFPEWTNGVSRGDSPDEMQRKDPLGAQIWKLYTRTKSQLPNQERMENLTWRMMAMNLKRKEREQQARASETLSPTPSGIAQMRLSDQPSPAGGDLAHDTTSDPMNLDDFIVPFDSPAEHSSHPIDRHFTATPTGSIPIKSRKDHAMMDSSTAASFPHPPQDQRTNSEFGYVARRVRKTSVDDRQFFAGLSVPTRKRPAEASPQVPPVSNAMMAQHSELSSALPDYSLDHPPSAYALSGNGTVGPRRPQHHHTHSNIPYGLDTYGISENHGLNSAGSYQQNFHFSPSDSPMTAGNPFSSLYAQTPLASSLNSTEFFSPPPSGYQSTVSTPQPIYEGEQSIFFSDAPSAESHTQRRIPNYIQQRQSNLSASLQPRYMYNMSNGESHSGSAVTGPPTTHVSGFSVPPPQHINPSQVLGHGEFSTTAPSSSMFTFGGDSDNEDDDGNFGEGGGMTMPNDFASLDESGDMSAGLHWDGGFPGSIHSLPGFNAQHRKHVTIGSTDMIDGPPEWNQGGTLGRAHGSAASVSEVRNQNQDPRRYGKVPRTASTPNAAALLRQSLNGSASGPPTNHPSPSTPPESGLSSAVPSRPGSPGGSKNGDPNAGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNRSSASTLAVGTSRSSKKSSRKNSIQHAPSTSISSRMNTSESPPSMNGSSSLGKTGVVPIAAAPPKSGPPAGVAQARAGVQVAPRRQRRLEKAPTGSDPDAKDSPKSAAPPSRSKVLPLAPAMAPPAAANPANHNIAGGQGASQEWEWLTMSL", "sequence_length": 860, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8313bbf0092883a272338687e1662b7161602257ce9f9066979ad0129b7c1f0c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O13508.json", "taxon_id": "5082", "uniprot_accession": "O13508", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/area-n-pf07573.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07573", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/area-n-pf07573.yaml" } ], "pfam_ids": [ "PF00320", "PF07573", "PF08550" ], "protein_name": "Nitrogen regulatory protein areA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGLTLGGGSGRVRPTQAAAAFPTSHDFADPDRSSVARNANRPSRRFAAPPQLSDDFSLESPTDSAQVHDNLLQDALFPEWKANSPRGVDSPDEMQKKDPLATQIWKLYSRTKAQLPNQERMENLTWRMMALSLRRQERERAQQQARASSQKSPVPGMSGIAQLRLSDRVSNTPTTTADTVSDAMNLDDFIIPFSPSDHPSPSTTKASEATTGAIPIKARRDQSASEATPVPASFPHPAQDQRRESEFGYVPRRVRKTSIDERQFFNLQIPSRKRPAESSPHVPPVSTSMLAHDPDFSHAVPEYTLDTSHGLSLQNQMNAQQLANAQNHTSPNMAFALDTFNLGDDPILPSAGPYQQQFTFSPSESPMTSGNPFANLYAQTPIASSLNSTDFFSPPPSGYQSTASTPQPAYDGEHSKYFDMPVDARSQRRVVPAYITQRSSNLSASLQPRYMYNQGGSSQDITQQNAHMGAQSSSMQSPGFSIPQHVDPTQVLNPNEFNGNHAAMFSFGADSDVEDDDGNQFSAGGLAMPAEFGDDSISDMNSNMAWETSYPNSFQSLPAFAAQHRKHVTIGSADMMDTPSEWNQGGSLGRTHESAASVSEVRNRDQDPRRQKIARTSSTPNTAQLLRQSMQNQSSHTSPNTPPESGLNSAAPSRPASPGGTKNGEQNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNSANSLAVGSSRVSKKSARKNSVQQVTPTAPTSSRAQSNTTSESPPAMPGSSGRGSGVVPIAAAPPKSSSAATTSPGTNNGCGAVQVAPKRQRRLEKASDVDMAESPSSTSSGGRSKVVPLAPAMPPAAVNPANHSIAAGQGASQEWEWLTMSL", "sequence_length": 876, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "83384cb978b2c7cab785f89a5b6549840bb0437b29ade8b135d68107b7f711f0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P17429.json", "taxon_id": "227321", "uniprot_accession": "P17429", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gata-area-pf08550.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08550", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gata-area-pf08550.yaml" } ], "pfam_ids": [ "PF00320", "PF08550" ], "protein_name": "Nitrogen catabolic enzyme regulatory protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAASTTTPTATTRPFFTMNPTTTEHDFRFPRRPGDSMAGTGLGGAAMSSSSANNNHNQHHPMSAFNHHHHHNAAGSARGRDSDGRPSSSNNNTSNGFVANINHQSSSNNNISKNIPPPTSDYHTQSASNGAAAYDLLRSSAFPPFQDGLAGMTQSPDEMQKQDPLATQVWKYFAKTKLALPNQERMENLTWRMMAKPLQTYRRQMETDRTHRFSESAPQKSTSGIARLRKSSEQTQSQGSDLMNLDDFINGENISTPAGLSLAPSPETSSKMADDRTAHHSTASAIPIKARKDQQSQHMIPQSVPAALHHPRMQTEFGYLPRHLRKTSIDETSKRNPNRKRPADFSPHVSAVTPSYVTNGLDADTDLHDYSLDHTSHDGLPPQTAPSSVPYALDTVGLDADTFITSAGPFQQNFSFSPSTSPMVSHDPFTAMFGPNNSSMHSGPINGNNFYSPPASAFQSTASTPHPMNEGGDNFYFGVDMRRARQQPYQPGNHGMGNAMAHQFPYAGNGNMMFPASSAGQDPTPSFAAPNSFSGHIDPTQVFHNEQAVRSPGMSVLQDSLFTFGAESDGDEEDGGAFADRNLSISHDFSSQGMEEPAFDSPSMGWDPSLPGNFSTQAARYPGGPPRKQVTIGATTTDYVDNTGEWDGSGLPRSQSQSFRQSDLRKGKMSRTASTPGLSARMNPFERLAQSASHSPPADVGRSSGLSSVPASRPSSPPPGAKQGSTTNLQGAAGNSTDTPTTCTNCFTQTTPLWRRNPDGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNRGSGASLPVGGTSTRSKKNASMSAAARKNSTLSITSNANNQPPAQVATPPAQQQVRASSVNESESPASGPASGGNTAGSTPTSYHGSTGSTSGAVGGKSVIPIASAPPKSAPGPGAGSMSRRDTISSKRQRRHSKSAGSDQPVSAGAVSSSGMDVDSPANSTGSNETMPTFNPGGAFSGLPPTTQSSLGFGNGYINTPRPMVGPGGMMGMPNGQAGQMMGASSSSGPGSGPSRTGAEWEWLTMSL", "sequence_length": 1036, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "628d8edfd7491d3e2deadf9d2557b381b01d73b7ac5fddfb37519b81a6f22a7f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P19212.json", "taxon_id": "367110", "uniprot_accession": "P19212", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-pseudohyphal-growth-go2000220.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000220", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-pseudohyphal-growth-go2000220.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nitrogen-regulatory-protein-area-gata-like-domain-ipr013860.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013860", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nitrogen-regulatory-protein-area-gata-like-domain-ipr013860.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P34072", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF08550" ], "protein_name": "Negative regulator of RAS-cAMP pathway", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "539f1e74fa076c8b4aabef445066a535cb58445d7d93fa21086f9ce075892381", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSREAFDVPNIGTNKFLKVTPNLFTPERLNLFDDVELYLTLIKASKCVEQGERLHNISWRILNKAVLKEHNINRSKKRDGVKNIYYVLNPNNKQPIKPKQAAVKQPPLQKANLPPTTAKQNVLTRPMTSPAIAQGAHDRSLDNPNSTNNDVKNDVAPNRQFSKSTTSGLFSNFADKYQKMKNVNHVANKEEPQTIITGFDTSTVITKKPLQSRRSRSPFQHIGDMNMNCIDNETSKSTSPTLENMGSRKSSFPQKESLFGRPRSYKNDQNGQLSLSKTSSRKGKNKIFFSSEDEDSDWDSVSNDSEFYADEDDEEYDDYNEEEADQYYRRQWDKLLFAKNQQNLDSTKSSVSSANTINSNTSHDPVRKSLLSGLFLSEANSNSNNHNTAHSEYASKHVSPTPQSSHSNIGPQPQQNPPSANGIKQQKPSLKTSNVTALASLSPPQPSNNERLSMDIQKDFKTDNESNHLYESNAPLTAQTILPTALSTHMFLPNNIHQQRMAIATGSNTRHRFSRRQSMDIPSKNRNTGFLKTRMEISEEEKMVRTISRLDNTSIANSNGNGNDDTSNQRTEALGRKTSNGGRI", "sequence_length": 584, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "539f1e74fa076c8b4aabef445066a535cb58445d7d93fa21086f9ce075892381", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P34072.json", "taxon_id": "559292", "uniprot_accession": "P34072", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-cellular-response-to-glucose-starvation-go1904547.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1904547", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-cellular-response-to-glucose-starvation-go1904547.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nitrogen-regulatory-protein-area-gata-like-domain-ipr013860.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013860", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nitrogen-regulatory-protein-area-gata-like-domain-ipr013860.yaml" } ], "pfam_ids": [ "PF08550" ], "protein_name": "Protein REG2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLSNCDSLDNLFQDPPEEEESSKFVEAVRTLMNRNDMGYPPAAANGTYCLKKIKSLNAKQWKINKKRMCMLPAVKKKNFDFHEQRSLILNLNLWKFIKFINCSSKNNYNKNNKHVRSSNNTVKNENVLPLQKHKKVDNDQRLENLFWRSWFKARKRRDIMGKPRERHIKFNDNVEQCIITDEHFIQRLPSTRLNSTDEQRPCSKSELDPCIGNAASKRSFYDYNSVYVASDAIITTAAATAIISSNSGDYQRGHDVRDVPRNVLLQAGETDFSSVLRVDSDLKLSNISHHSPVKPSSTSSHSTFIFESETDTDTDTDAETENDIDAYIDTSIPNLLL", "sequence_length": 338, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "33387d97a66ecff9306680272efea50a833b5068e41d7a2dcfbb18e6a48bb2f2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38232.json", "taxon_id": "559292", "uniprot_accession": "P38232", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nitrogen-regulatory-protein-area-gata-like-domain-ipr013860.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013860", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nitrogen-regulatory-protein-area-gata-like-domain-ipr013860.yaml" } ], "pfam_ids": [ "PF00320", "PF08550" ], "protein_name": "Transcriptional regulatory protein GAT1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHVFFPLLFRPSPVLFIACAYIYIDIYIHCTRCTVVNITMSTNRVPNLDPDLNLNKEIWDLYSSAQKILPDSNRILNLSWRLHNRTSFHRINRIMQHSNSIMDFSASPFASGVNAAGPGNNDLDDTDTDNQQFFLSDMNLNGSSVFENVFDDDDDDDDVETHSIVHSDLLNDMDSASQRASHNASGFPNFLDTSCSSSFDDHFIFTNNLPFLNNNSINNNHSHNSSHNNNSPSIANNTNANTNTNTSASTNTNSPLLRRNPSPSIVKPGSRRNSSVRKKKPALKKIKSSTSVQSSATPPSNTSSNPDIKCSNCTTSTTPLWRKDPKGLPLCNACGLFLKLHGVTRPLSLKTDIIKKRQRSSTKINNNITPPPSSSLNPGAAGKKKNYTASVAASKRKNSLNIVAPLKSQDIPIPKIASPSIPQYLRSNTRHHLSSSVPIEAETFSSFRPDMNMTMNMNLHNASTSSFNNEAFWKPLDSAIDHHSGDTNPNSNMNTTPNGNLSLDWLNLNL", "sequence_length": 510, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8cafcb1bd686ec70270cf3734613a74de8d5c781a86fa62644bbbeb6b2608bc4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P43574.json", "taxon_id": "559292", "uniprot_accession": "P43574", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-catabolic-process-in-the-vacuole-go0007039.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0007039", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-catabolic-process-in-the-vacuole-go0007039.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-cellular-response-to-glucose-starvation-go1904547.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1904547", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-cellular-response-to-glucose-starvation-go1904547.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nitrogen-regulatory-protein-area-gata-like-domain-ipr013860.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013860", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nitrogen-regulatory-protein-area-gata-like-domain-ipr013860.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gata-area-pf08550.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08550", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gata-area-pf08550.yaml" } ], "pfam_ids": [ "PF08550" ], "protein_name": "Resistance to glucose repression protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTNLANYFAGKKDIENEHVNRNASHESNSKSDVKISGNDNDNDEDMGPSVSMAVQAKNDDDFHKSTFNLKRTRSMGLLDEYIDPTKKLLGRSDDLYDNDNEYYDNSSNNSSSNSSDDDYDDGYQEHSTSVSPPPADNDSYLIPQDDNDVVVEPERHVDYLSHEWKESEISNSWKYIILKKKKRDVDLVNAARLENASWRTWAKARNNLKTVSPEVVNWSKDSDVTWLYGPIVRDSEGNAQSEEEHDLERGYGSDDENSKRISMPTKNSKSIAAAPKPILKKRTVTEIIEDNALWKLNEARKHMTEMKHASVIMDPNGNKNVHDDFDALAAQVNAQYYHYPKESNSSVSLKSQHSDKKDNSTIPNPVGENSNGGGDKGEEDLHLKSALHVQNNRSTAQSNKSILENSTNDRKANLDQNLNSPDNNRFPSSTSSSNRDNENNSMGLSSILTSNPSEKSNKPTKNRHIHFNDRVEQCMALRYPASQSEDDESDDENKQYVDVNNNANVTTINNNRTPLLAIQHKSIPINSATEHLNKNTSDDDTSSQSSSSSHSDDEEHGGLYINARFSRRSDSGVHSPITDNSSVASSTTSRAHVRPIIKLLPDTTLNYGSDEESDNGEFNGYGNAVSHNVNTSRGYDYIYDYNSVYTGDTSSFLPVDSCDIVDVPEGMDLQTAIADDNASNYEFNNAVESKEKHVPQLHKASANNTTRQHGSHMLLYDDDNYSSSSDSEQQFIEDSQYNSSDDEEEEDDDDQEVDDNHDEGLSLRRTLSLGKSGSTNSLYDLAQPSLSSATPQQKNPTNFTGGKTDVDKDAQLAVRPYPLKRNSSSGNFIFNSDSEEESSSEEEQRPLPANSQLVNRSVLKGSVTPANISSQKKKALPKQPKASDSSQSFRIVNNTPSPAEVGASDVAIEGYFSPRNESIKSVVSGGNMMDHQDHSEMDTLAKGFENCHINNASKLKDKKVDSVQTTRKEASLTDSSNESLHKVVQNARGMASKYLHSWKKSDVKPQENGNDSS", "sequence_length": 1014, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cf756e36e19194ab99dbbf703f50f90f16bda98552373be64c4bc34428e8048b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q00816.json", "taxon_id": "559292", "uniprot_accession": "Q00816", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gata-area-pf08550.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08550", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gata-area-pf08550.yaml" } ], "pfam_ids": [ "PF00320", "PF08550" ], "protein_name": "Transcription factor gaf1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLKFSNFFKEAEHPALVKKFDKSTTDESSSKEDYSTMSDLWKMFSKAKSELSNGRRVENLTWRLMSINLQKNLTPNGDSNTLTPDTFSDPTAPSSAQSVPPTSSAETTADNSDTEMKLNPIPAYSVPADTTGSSLMEFNYIQRRVRKTSFDESTAKSKKRSIADSHFPDPNAMQRPHDLESQPFSYPKIHASNSFNFVKRDIDSSNFSNLDASALPISPPSDFFSVHSHNLPNAPPSIPANSNNSASPNQRIKASPKHADTDVLGLDFDMTPSEPSSFPENGGFPSFVDANTHEQTLFPSSATNSFSFEHGSAGFPIPGSVPSTSYHANTASEDGFSSSYNSQGLFGISSPLSSGVTPNQSFFPDVSGNNIFDVSRNNHEVSSPLIQSPGSYVSMPSINMVSSLPISAPVPNSNSQFPRRPNTFRTNSSKSVGQGSSGVDSNQENAESFNPSISSHNSAEWASGETTGHSSNSPLPGSDMFSPQFMRVGTAMGVAPVRSNSSNNFGQNFFHQTSPQFSAVPHRKVSAQDTNLMGSSPGMYNHMPYLNRATSANSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTKKDRSVSFNINKNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACGLFMKINGVVRPLSLKTDVIKKRNRGVGTSATPKQSGGRKGSTRKSSSKSSSAKSTAADMKPKADSKSISPGFVGGNQSLSSERIPLDPSMRSPLQQQSSENESKSQSMLSANNLNAGVNDFGLGFSEGLGSAHLDSNDSSMVQGKNDFAPVVDSPLFDAFDTDLGMSSVAESHTMNMDPSDLSRVSKSWDWYSVM", "sequence_length": 855, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "df054f89bc24a20b81f78990cdf052d34354cec5b928bb53882466538fd4daec", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q10280.json", "taxon_id": "284812", "uniprot_accession": "Q10280", "uniprot_release": "2026_03" } ], "pfam_id": "PF08550", "short_name": "GATA_AreA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1751-pf08551.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08551", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1751-pf08551.yaml" } ], "pfam_ids": [ "PF08551" ], "protein_name": "Transmembrane protein 115 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQYSSRFLELNIPDSFLNINKIPDATKFITVTYICLTATLFCIRRSLYNKLVLEDPNLDYNLITSPLLQMVPSQIWRYPTSLVLSNFIDTKAWKVVVNLLNLIIGGSFIERNWNSSKEMFKFIIVLGSLTNVLIIMLTLLVSFFSNKVRLDIPLDGNYTILIGFPIIYRQLLPETTIIHLKTPQFLAKNFRFKLLPIFVMFTMTVTQIIWFHHFAQLFSIWVTFFASWSYLRFFQKLAPLNCPSLPTTNSQGGQEILVGDASDTFQLIYFFPDLIKPILRPIFNFIYNVVVVKFKVIKPFHDIDIDIGNTIAESRGAKKIMTVEERRRQLALQVLEERMVNP", "sequence_length": 342, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2a0f5f14beef42e4c99c3b1a0f24b88b2f6ee2112326ca0b0b0945b7bffa9efa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12239.json", "taxon_id": "559292", "uniprot_accession": "Q12239", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1751-pf08551.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08551", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1751-pf08551.yaml" } ], "pfam_ids": [ "PF08551" ], "protein_name": "Transmembrane protein 115", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQRALPGARQHLGAILASASVVVKALCAAVLFLYLLSFAVDTGCLAVTPGYLFPPNFWIWTLATHGLMEQHVWDVAISLTTVVVAGRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLTYMASFNLVYLFTVRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVMPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVYLRFYQRHSRGRGDMADHFAFATFFPEILQPVVGLLANLVHSLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAERRRQLALKALNERLKRVEDQSIWPSMDDDEEESGAKVDSPLPSDKAPTPPGKGAAPESSLITFEAAPPTL", "sequence_length": 351, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3b9d0ca36c9ab3224442142cff165973bd8d2edda4a75ae66a5302ee52387f68", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12893.json", "taxon_id": "9606", "uniprot_accession": "Q12893", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1751-pf08551.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08551", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1751-pf08551.yaml" } ], "pfam_ids": [ "PF08551" ], "protein_name": "Rhomboid-like protein 19", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSPGTSMFTNFTKLCKGLALVLVVGHLVVQFIPATVPYLALIPARTIPFAWNLITSGYFELSVYGVVFSTVSLLFMGKFLEPVWGSTEFLKFIFVVNFLTYLCVFVTAIALYYITRLEVYLYMPFAGFHGVLAGLLVGIKQIIPDQEILLLKIKAKWLPSIMLILSIASSFFTLDSAAYLPTLIFGTYMGWLYLRYLQRRPETKLRGDPSDDFAFSTFFPELLRPVIDPIALIFHRMLCGRSNATSEDHDYSTSGAPLPGSDSAEASRRRERGARALEERLGTERLVPARNKDELQSDGLDNV", "sequence_length": 304, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8a9c4622c7d472f29cd990b52740b4f530dd4fc53ff9f45664b8f9da993ba337", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LF05.json", "taxon_id": "3702", "uniprot_accession": "Q8LF05", "uniprot_release": "2026_03" } ], "pfam_id": "PF08551", "short_name": "DUF1751", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/kei1-pf08552.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08552", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/kei1-pf08552.yaml" } ], "pfam_ids": [ "PF08552" ], "protein_name": "Inositol phosphorylceramide synthase regulatory subunit kei1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALFRRPNWSALFEKIFIQKSFLGFCSLRVGCEIIIWFAIINKVSGLYGIVSLFQNSDASPWQVLMYVSSVLMLILFSWLAIHIPKSSVPHALILFYVYLIDFLLNVLFTVLFALSWFSKLVQSDSSSTEESADSDPSPSLLYLFFQAESIPSLLLLIFFASLKFYFVLITLSYSNKLIVDSGIRPQNLPPNFSGRVTRLLMKPYIMAANRSYLRNHTKRFTDSIELEQRLMDEVV", "sequence_length": 236, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7fe127f08353c51ae2813a95d11e28e4c9dab7cd222997587c2eb096154098ae", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O13994.json", "taxon_id": "284812", "uniprot_accession": "O13994", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/inositol-phosphoceramide-synthase-complex-go0070916.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070916", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/inositol-phosphoceramide-synthase-complex-go0070916.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/inositol-phosphoceramide-synthase-regulator-activity-go0070917.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070917", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/inositol-phosphoceramide-synthase-regulator-activity-go0070917.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/inositol-phosphoceramide-metabolic-process-go0006673.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0006673", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/inositol-phosphoceramide-metabolic-process-go0006673.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/kei1-pf08552.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08552", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/kei1-pf08552.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q06346", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF08552" ], "protein_name": "Inositol phosphorylceramide synthase regulatory subunit KEI1", "registry_source": { "commit": 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"f9ec29d6bd214038618f7174cd2fd0cc0d26daa39bc4deb14bb7c28292072e0f", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEAARTAVLRVKRKRSAEPAEALVLACKRLRSDAVESAAQKTSEGLERAAENNVFHLVATVCSQEEPVQPLLREVLRPSRDSQQRVRRNLRASAREVRQEGRYRVLSSRRSLGTTSSGQESEYTPGNPEAAGNSGFQLLDLVHEEGEPEAASAGSCKTSDPDVILCNSVELIRERLTVSEDGPGVRRQEEQKHDDYVYDIYYLETATPGWIENILSVQPYSQEWELVNDDQEPEDIYDDEDDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEERGSSRQRMWSKYPLDVQKEFGYDSPHDLDSD", "sequence_length": 309, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f9ec29d6bd214038618f7174cd2fd0cc0d26daa39bc4deb14bb7c28292072e0f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96CW6.json", "taxon_id": "9606", "uniprot_accession": "Q96CW6", "uniprot_release": "2026_03" } ], "pfam_id": "PF08574", "short_name": "Iwr1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1764-pf08576.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08576", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1764-pf08576.yaml" } ], "pfam_ids": [ "PF08576" ], "protein_name": "Uncharacterized protein 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"c367c1e303fe4d2b5a5bc4719090ff022ca2898dd603d191a1325b96fdb3a46f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O14260.json", "taxon_id": "284812", "uniprot_accession": "O14260", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1765-pf08578.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08578", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1765-pf08578.yaml" } ], "pfam_ids": [ "PF08578" ], "protein_name": "UPF0592 protein YDL073W", 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"MSVASAVLRVETWLLATWHVKVPPMWLEACVNWIQEENNNATLSQAQINKQVLEQWLLTDLRDLEHPLLPDDILELPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVSAETQSTPKPWEVRPSRMLMLQLTDGVTHIQGMEYQSIPALHSGLPPGTKILVRGCILFRLGVLLLKPENVKVLGGEVDGLSEENAQEKVLARLIGELDPTVPVIPNNSIHNVPKVSGGLDAVLGPSDEELLASLDESEESAANNDVAMERSCFSTGTSSNTTPTNPSGFEPGCNISSRPKEKPPNQPTHFTDGEFDDFSLEEALLLEETVQKEQMETKASQPLTLKENTGKCMEIFSHKPSSLNHTALIHKQGNSNFDEKTSEQMIHEDKFFDCASTRNHHKRFSAHDFTNDSKISEVDDAAQQTLSSSNVHCLRNKILNRKLDLSEKSSQISKENGHPFQACSSRSFENNTYLSIGMDLHSPPFIYLSVLMARKPKEVTTVTVKAFIVTLTGNLSSSGGFWGVTAKVSDGTAYLDVDFIDEILTSMIGYSVPEMKQLRKDPLKYKTFLEGLQKCQRDLIDLCCLMTISYDPSSCKGVVLELQDVGMEHVENLKKRLNK", "sequence_length": 616, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "090748ee6eb5adf14b74b5622c997f6c77615aac31f0a3141399c9964033d2fe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D4G9.json", "taxon_id": "10090", "uniprot_accession": "Q9D4G9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", 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"data/traits/structure/homologous_superfamily/cath/recq-mediated-genome-instability-protein-1-n-terminal-domain-1-10-8-1020.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.8.1020", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/recq-mediated-genome-instability-protein-1-n-terminal-domain-1-10-8-1020.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/recq-mediated-genome-instability-protein-rmi1-c-terminal-domain-2-40-50-770.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.40.50.770", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/recq-mediated-genome-instability-protein-rmi1-c-terminal-domain-2-40-50-770.yaml" } ], "pfam_ids": [ "PF08585", "PF16099", "PF21000" ], "protein_name": "RecQ-mediated genome instability protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNVTSIALRAETWLLAAWHVKVPPMWLEACINWIQEENNNVNLSQAQMNKQVFEQWLLTDLRDLEHPLLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVTAEAQVTPKPWEAKPSRMLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYGNISFRLGVLLLKPENVKVLGGEVDALLEEYAQEKVLARLIGEPDLVVSVIPNNSNENIPRVTDVLDPALGPSDEELLASLDENDELTANNDTSSERCFTTGSSSNTIPTRQSSFEPEFVISPRPKEEPSNLSIHVMDGELDDFSLEEALLLEETVQKEQMETKELQPLTFNRNADRSIERFSHNPNTTNNFSLTCKNGNNNWSEKNVSEQMTNEDKSFGCPSVRDQNRSIFSVHCNVPLAHDFTNKEKNLETDNKIKQTSSSDSHSLNNKILNREVVNYVQKRNSQISNENDCNLQSCSLRSSENSINLSIAMDLYSPPFVYLSVLMASKPKEVTTVKVKAFIVTLTGNLSSSGGIWSITAKVSDGTAYLDVDFVDEILTSLIGFSVPEMKQSKKDPLQYQKFLEGLQKCQRDLIDLCCLMTISFNPSLSKAMVLALQDVNMEHLENLKKRLNK", "sequence_length": 625, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4de31be25c5d14ec61e87708eef2628b1918cd5ef38f968654479917d658f633", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H9A7.json", "taxon_id": "9606", "uniprot_accession": "Q9H9A7", "uniprot_release": "2026_03" } ], "pfam_id": "PF08585", "short_name": "RMI1_N_C", 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"https://rest.uniprot.org/uniprotkb/A4DA85.json", "taxon_id": "330879", "uniprot_accession": "A4DA85", "uniprot_release": "2026_03" } ], "pfam_id": "PF08592", "short_name": "Anthrone_oxy", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08593", "short_name": "Mug135_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1774-pf08611.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08611", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1774-pf08611.yaml" } ], "pfam_ids": [ "PF08611" ], "protein_name": "Uncharacterized protein C637.03", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQITRESKYIIGLVLALGVSFATLLAHLFTKPSLEWVYNHHATPFFANKFMLGGYLLVEYLSFLLMIVPLLMLGDQVNDFTFSIIHTSIWYNVFVVFTVWAFTREKLYWTAFFSLCLFSSSFTMYGQSLRLRNGFVEMISMKLPSKLVFGKSLWFVVYAFSAALHCTGIGCRVFSNVFIWFFAAMYLVPILGFHDWALSLVSAYLFLSIGIGQMFIHLFALQHIFAFIIAGLMTLFAALLFLLPYRQRRAALTGESAPLLQDNNAGPAV", "sequence_length": 269, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "adb5b00bf35e52b657aaaf3b8f1b07da4a401547d04f0b5fa1ad66f0b90ae9b8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O94440.json", "taxon_id": "284812", "uniprot_accession": "O94440", "uniprot_release": "2026_03" } ], "pfam_id": "PF08611", "short_name": "DUF1774", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1776-pf08643.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08643", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1776-pf08643.yaml" } ], "pfam_ids": [ "PF08643" ], "protein_name": "UPF0744 protein YSC83", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAWSGGKDIVDQIFDAGYWLVSKSAVLSDEIKNHVEKSIESISGKISNKETPRLQENDSNRSKVYKTLRIGLQDHWKLGLGISATSLCLYLGYRTFFKLPPNLPEAESQVVLILGDMNDPIIRNQVMDLYRRRFTVYICTENADVYKKHEEDQDFIYYIDPTCEKDFEGFFVDVPRLASILFMPRLSYHPSGVISCDSLESEIHSSIFVYYQALLSIIPHLKRKTQLIMFNPSLTADLNLVHHSTEIITSGIIDSLFKIFKEYQRLNVSTIKLGILQIGSQPSNYKFLRMAGSDIHEALHYPVYKMIMSANGYKLRQLLSWLTTLGGYNSVYYCGRFSYLVSWPFASLIFNHHTRLSLKRLRGRLAKVYSSIISFFCRSSSKSSK", "sequence_length": 385, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "162428487985a5fb43b7aa08aaa5809230a1ffd23889f5d2ee9368cea04c7a7b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32792.json", "taxon_id": "559292", "uniprot_accession": "P32792", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces paradoxus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1776-pf08643.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08643", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1776-pf08643.yaml" } ], "pfam_ids": [ "PF08643" ], "protein_name": "UPF0744 protein YSD83", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTWPGGKDIVDQIFDAGYWLVSKSAVLGDEIKNHVEKSIESISEKMSNKETPRLQESNSNKFKAYKTLRIGFQDHWKLGLGISATSLCLYLGYRTFFKLPPYLPEAESQVVLILGDMNDPIIRNQVMDLYRRRFTVYICTENADVYKKHEEDQDFVYYIDPTCEEDFEAFFLDVPRLASILFMPRLSYHPSGAISCDSLESEIHSSILVYHQALLTIIPHLKRNTQLIMFNPSLTAELNLVHHSTEIIMSSIIDSLFRIFKNYRRLNVSMIKLGILQIGSQPSNYKFLTMAGSDIHEALHYPVYKMIMSANGYKLRQLLSWLTTWGGCNSVYHCGRFSYLISWPFASLIYNHRTRFSLKRLKKNLTKAYNSIISILPQSSSKSSK", "sequence_length": 385, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70dee1792a4a229dc2a953ea1c6b16698985186674168cb5571de6c164891bc0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41907.json", "taxon_id": "27291", "uniprot_accession": "P41907", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1776-pf08643.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08643", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1776-pf08643.yaml" } ], "pfam_ids": [ "PF08643" ], "protein_name": "UPF0744 protein C106.03", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNPERWAADLVSNVKDYGKRIIDYAHEKTSNPQPVTVHTTNSAKGRLGEFLYQNRVSVGLGSAALFLAGLSYYKRYDYVRKRRAPRAPNHQKTQVVVLSAWNPLASVIAHDLDRRGFIVVVLVRDASEAATVSLQQRPYIQSLIVTHNEAVERFLLSFSNQSGPKEYALRLRGLILVPTGDSLYTPIENIGKDAWISAFQQLSESFSNVSRMIPLLKSQKARIIGLSHGILSAYEPPNYAVPSILSSSIETFLRTLKRETGLQVICIKLGNLSFLNYDHSSSPGKSNYPPSLCTERKVLNKIFDSLLGCWPSPTRHVGCRTFFMVTVSRFLPTCVIDGIFSLFGKFHFFSCSLIKRS", "sequence_length": 357, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b0c6accf91d78ff3b4eb180dd2ee9c0dbdb7d2f64a98561d4721c2acfd9f3920", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9URV8.json", "taxon_id": "284812", "uniprot_accession": "Q9URV8", "uniprot_release": "2026_03" } ], "pfam_id": "PF08643", "short_name": "DUF1776", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/u4-u6-u5-small-nuclear-ribonucleoprotein-27kda-protein-ipr013957.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013957", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/u4-u6-u5-small-nuclear-ribonucleoprotein-27kda-protein-ipr013957.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/snrnp27-pf08648.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08648", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/snrnp27-pf08648.yaml" } ], "pfam_ids": [ "PF08648" ], "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGRSRSRSPRRERRRSRSTSRDRERRRRERSRSRERDRRRSRSRSPHRRRSRSPRRHRSTSPSPSRLKERRDEEKKETKEIKNKERQITEEDLEGKTEEEIEMMKLMGFASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFNRPLDFIA", "sequence_length": 155, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "076685877b56b07119de346eeb601505167349fb7b946fc6395291979dca6e5d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8K194.json", "taxon_id": "10090", "uniprot_accession": "Q8K194", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/u4-u6-u5-small-nuclear-ribonucleoprotein-27kda-protein-ipr013957.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013957", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/u4-u6-u5-small-nuclear-ribonucleoprotein-27kda-protein-ipr013957.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/snrnp27-pf08648.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08648", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/snrnp27-pf08648.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8WVK2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF08648" ], "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a190a52f1ebeaa99a2449ae017721169ff9dbe3bf92942bc1e221981cb323490", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGRSRSRSPRRERRRSRSTSRERERRRRERSRSRERDRRRSRSRSPHRRRSRSPRRHRSTSPSPSRLKERRDEEKKETKETKSKERQITEEDLEGKTEEEIEMMKLMGFASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFNRPLDFIA", "sequence_length": 155, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a190a52f1ebeaa99a2449ae017721169ff9dbe3bf92942bc1e221981cb323490", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WVK2.json", "taxon_id": "9606", "uniprot_accession": "Q8WVK2", "uniprot_release": "2026_03" } ], "pfam_id": "PF08648", "short_name": "SNRNP27", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spoiit-pf08680.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08680", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spoiit-pf08680.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/sporulation-protein-spoiit-like-ipr036209.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036209", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/sporulation-protein-spoiit-like-ipr036209.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/ywmb-like-3-30-2030-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.2030.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ywmb-like-3-30-2030-10.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/ywmb-like-3-30-360-40.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.360.40", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ywmb-like-3-30-360-40.yaml" } ], "pfam_ids": [ "PF08680" ], "protein_name": "Sporulation protein SpoIIT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKKQVSHAIIISVMLSFVIAVFHTIHASELTPLAQMAEGMERQDVSIDKWTLHAKQNLSLTEKEFYQKVQRLKQEYRQYDWVIAREDKMIKAIGTYTDKKNRTSFRLQLVTTLKKHNPTSYLLYEQMSLETPDSWNDTYEQFERETLGIFQEKVVIFTCLNGHLDDNMNIVLQKKANQLLNEFQARSVEHVVEPNFVSISAFTDEWEEYIMTSKHKMNLQIALRSAGMGGKHTVTVGTPIVTTEY", "sequence_length": 246, "sequence_origin": 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"link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/ufm1-conjugating-enzyme-activity-go0061657.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061657", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/ufm1-conjugating-enzyme-activity-go0061657.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/ufm1-transferase-activity-go0071568.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071568", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/ufm1-transferase-activity-go0071568.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-k69-linked-ufmylation-go1990592.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990592", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-k69-linked-ufmylation-go1990592.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/ubiquitin-conjugating-enzyme-e2-catalytic-ubcc-domain-of-ubiquitin-fol-cd11686.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd11686", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/ubiquitin-conjugating-enzyme-e2-catalytic-ubcc-domain-of-ubiquitin-fol-cd11686.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ufc1-pf08694.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08694", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ufc1-pf08694.yaml" } ], "pfam_ids": [ "PF08694" ], "protein_name": "Ubiquitin-fold modifier-conjugating enzyme 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHKEKCNQ", "sequence_length": 167, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fa1a6fbb3f316739bfe7c412a02ea708b790c39a63e3fc5472da67d121a1b56e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y3C8.json", "taxon_id": "9606", "uniprot_accession": "Q9Y3C8", "uniprot_release": "2026_03" } ], "pfam_id": "PF08694", "short_name": "UFC1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/coa1-pf08695.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08695", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/coa1-pf08695.yaml" } ], "pfam_ids": [ "PF08695" ], "protein_name": "Cytochrome c oxidase assembly factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISSKSLDYTRFLPFFAALVRGHCLTVKSPTHNCGSGVKTIMDKSSIFLKNRYPISINRFVQQRKTFCGASVCLHKVLVQRQFGFEEKSHGLKYKKLFRRNIGTSEKKNRLPDLLELSSSPRRLPILFAAFCLLWGTCAVLAIQYGKQNSNVTQVVMYRVQHSKEAQDLLGSNIDFKYPFPWVPGKLHKRQGFIDINFEVSGSLASGTVHYQSQRFGPIAHWVELDCTLTSNGKTIKIPTGVSKDTQWT", "sequence_length": 249, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc468eff035b1316446f244945549232a5eccda44ed1e7900dd01a396a7d91f1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O14320.json", "taxon_id": "284812", "uniprot_accession": "O14320", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/coa1-pf08695.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08695", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/coa1-pf08695.yaml" } ], "pfam_ids": [ "PF08695" ], "protein_name": "Cytochrome c oxidase assembly factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMLRLVTKGLPKVTPSAAKAVLVRGSLLHSFSTSARFNNSVAEDEAKIVLKDKNRPLRIDRELPDPTTERRKRIAGFLLFSVAIGSALSLIFNYEKTESPIISNTLYYIRRSPATKNILGESIEFDGIIPWVYGELNSVKGRINITFYIKGDKNVTGTVRLVADRNTHDEEFLIHEWSVTAAGQKIDLLAENTKTPI", "sequence_length": 197, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e551f39a395a33aadcb27169d433bda20273206ac7a14ae394e8284f558902de", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40452.json", "taxon_id": "559292", "uniprot_accession": "P40452", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/coa1-pf08695.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08695", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/coa1-pf08695.yaml" } ], "pfam_ids": [ "PF08695" ], "protein_name": "Cytochrome c oxidase assembly factor 1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMWQKYAGSRRSMPLGARILFHGVFYAGGFAIVYYLIQKFHSRALYYKLAVEQLQSHPEAQEALGPPLNIHYLKLIDRENFVDIVDAKLKIPVSGSKSEGLLYVHSSRGGPFQRWHLDEVFLELKDGQQIPVFKLSGENGDEVKKE", "sequence_length": 146, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "be0c5e9269aeebe879183f0cd1e5da3cd4b561fccade527a151cde5f49c1e31a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9GZY4.json", "taxon_id": "9606", "uniprot_accession": "Q9GZY4", "uniprot_release": "2026_03" } ], "pfam_id": "PF08695", "short_name": "Coa1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fcf2-pf08698.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08698", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fcf2-pf08698.yaml" } ], "pfam_ids": [ "PF08698" ], "protein_name": "Deoxynucleotidyltransferase terminal-interacting protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVTRSARPQARNEATSVESLRQKNSAVTRLHVHPKGRKGSSPDNPNTTESQTTPERSPAPKTRKSGTTGSLPEMNKPATDGEISEAESDCSSVPEVQDPVFRVTRRRQILVAGTPVSSVRKRLKITRVSESHTEEVVSEADSHVSGISRIMPPTEITTRRSKAKSQREPKQESHVEVISDAESSCSDISFSGIATRRTTRSMQRKLQAQTEENNTKIVLENEKEIIHTPVNLEDSVNRRTSRLLARSLSQINKPNFSNNEIYNDPDDSFFGISGKKLAVKKTRNFTIREEKQDSISPLKEITKQNCKSLDEEAKKIIDGGKEGNEKNSQLNLSEFQDTGLQQLVSQRHSTPESDKTTSESSTLNHEAVMKSLAQTFAVVEMDRWNEERKNAIKTSDCSEPGDGSYSDSDEECTVIGVSEDMSKEKEVDSESDTKPSNLEFNTTQDKDDSVLLVLSSDESQQSEHSENEEDTVCFVENNGNKESLNGDSENLSHDNALFVIDTTPGLSADKNFYLDEEDKAGEVATEEEEEEEEEESEEELSDHDRNKDNEFSDEDNLLSNTKSKLLKLMSSSIDTGLNIKELGGLYINFNADKVQLNKRTLTQMKEKRKDELLQKTVITPEFEKNYCVPPYSESKYKLQKKRRQERQKTAGDGWFGMKAPELTDELKNDLKALKMRASMDPKRFYKKNDRDGFPKYFQIGTIVDNPADFYHSRVPKKQRKRTIVEELLADSEFRRYNRRKYSEIMAEKAANAAGKKFRKKKKFRN", "sequence_length": 766, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7a8497da4aa1930d9276d80396dfe556c4b7c8f4bbcf34845fdaa8fb54b7cff9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0P5H2.json", "taxon_id": "9913", "uniprot_accession": "Q0P5H2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fcf2-pre-rrna-processing-c-terminal-ipr014810.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR014810", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fcf2-pre-rrna-processing-c-terminal-ipr014810.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fcf2-pf08698.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08698", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fcf2-pf08698.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q12035", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF08698" ], "protein_name": "rRNA-processing protein FCF2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e3de51e9620ee30757995c3a34334d5f8b693f2fc007c0b0e437c38ce639b2ee", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDQSVEDLFGALRDASASLEVKNSAKEQVSLQQEDVLQIGNNDDEVEIESKFQEIETNLKKLPKLETGFDALANKKKKKNVLPSVETEDKRKPNKSDKNDNDWFTLPKPDDNMRREVQRDLLLIKHRAALDPKRHYKKQRWEVPERFAIGTIIEDKSEFYSSRMNRKERKSTILETLMGDEASNKYFKRKYNEIQEKSTSGRKAHYKKMKEMRKKRR", "sequence_length": 217, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e3de51e9620ee30757995c3a34334d5f8b693f2fc007c0b0e437c38ce639b2ee", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12035.json", "taxon_id": "559292", "uniprot_accession": "Q12035", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fcf2-pre-rrna-processing-c-terminal-ipr014810.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR014810", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fcf2-pre-rrna-processing-c-terminal-ipr014810.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fcf2-pf08698.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08698", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fcf2-pf08698.yaml" } ], "pfam_ids": [ "PF08698" ], "protein_name": "Deoxynucleotidyltransferase terminal-interacting protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVTRSARAKASIQAASAESSGQKSFAANGIQAHPESSTGSDARTTAESQTTGKQSLIPRTPKARKRKSRTTGSLPKGTEPSTDGETSEAESNYSVSEHHDTILRVTRRRQILIACSPVSSVRKKPKVTPTKESYTEEIVSEAESHVSGISRIVLPTEKTTGARRSKAKSLTDPSQESHTEAISDAETSSSDISFSGIATRRTRSMQRKLKAQTEKKDSKIVPGNEKQIVGTPVNSEDSDTRQTSHLQARSLSEINKPNFYNNDFDDDFSHRSSENILTVHEQANVESLKETKQNCKDLDEDANGITDEGKEINEKSSQLKNLSELQDTSLQQLVSQRHSTPQNKNAVSVHSNLNSEAVMKSLTQTFATVEVGRWNNNKKSPIKASDLTKFGDCGGSDDEEESTVISVSEDMNSEGNVDFECDTKLYTSAPNTSQGKDNSVLLVLSSDESQQSENSENEEDTLCFVENSGQRESLSGDTGSLSCDNALFVIDTTPGMSADKNFYLEEEDKASEVAIEEEKEEEEDEKSEEDSSDHDENEDEFSDEEDFLNSTKAKLLKLTSSSIDPGLSIKQLGGLYINFNADKLQSNKRTLTQIKEKKKNELLQKAVITPDFEKNHCVPPYSESKYQLQKKRRKERQKTAGDGWFGMKAPEMTNELKNDLKALKMRASMDPKRFYKKNDRDGFPKYFQIGTIVDNPADFYHSRIPKKQRKRTIVEELLADSEFRRYNRRKYSEIMAEKAANAAGKKFRKKKKFRN", "sequence_length": 756, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4348676b06a04292e25f4d78a6d077cc848808845081811362c1b732548117cb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5QJE6.json", "taxon_id": "9606", "uniprot_accession": "Q5QJE6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fcf2-pre-rrna-processing-c-terminal-ipr014810.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR014810", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fcf2-pre-rrna-processing-c-terminal-ipr014810.yaml" } ], "pfam_ids": [ "PF08698" ], "protein_name": "Deoxynucleotidyltransferase terminal-interacting protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVTRSGLSRTRLQESSQQKRSAPRRIGTHLESTKESGSDGSTAESQPAEKQHSRSSSRTTGPAEIIVLISDDEASETESHTSGVTSVLEDQEPIVRVTRKRQIVIASTSKSTVRKRQKVAPQHASADEVVVSEAESHVSGVSMVVPSTERSSRNKANSQRDSSQESQSGTVSDAELSCSGISSLEILPRTTARNVKKKLQFPAEKNDTKITPGNKKQIVGMSVCSEDSDATQLSARPLSQRNMPNVSDSETYNSDFDDSSPRNSGKKLTAQNHQNLHIQEEKRANVVSLTEVRKENCKSLDEEDLKITEEKVINEKDSQRSLSEAQDTSLQQSVSQNHSSTPNKKPTFQLSSPDRKALMKSLEHKFAVVNVERWNDKRGGSGKKSDLAQLGGGGGGGDDNEPTGAGISDDKSSQSGVPLECDTKPCKSELSMTQDTTDSPVLLFLSSDESQQSDSSENERDTLCSVENNGQKEASAEDLEDAACDSALFVIDKTPGLSADKNFYLEDKAPSEVAIEEEKEEEEKEEENSEEDSSDSDENKDESSDEEDLLSNTKSKLLKLTSSSIDPGLNIKQLGGLYINFNVDKLQPHKETLTQIKEKKKNELLQKAVITPDFEKKHCVPPYSESKHRLQKQRRKERQKTAGNGWFGMKAPELTDELKNDLRALKMRAGMDPKRFYKKNDRDGFPKYFQVGTIVDNPADFYHSRIPKKQRKKTIVEELLADSEFRRFNRRKYSEIMAEKAANAEGKKFKKKKKFRN", "sequence_length": 758, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "94a18553c3514002366e2e33c94ad2fe89168cf49a084024698caaeaf1471260", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R2M2.json", "taxon_id": "10090", "uniprot_accession": "Q8R2M2", "uniprot_release": "2026_03" } ], "pfam_id": "PF08698", "short_name": "Fcf2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 10, "discovery_scanned": true, "example_count": 10, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gly-rich-ago1-pf12764.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12764", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gly-rich-ago1-pf12764.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O04379", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02170", "PF02171", "PF08699", "PF12764", "PF16486", "PF16487", "PF16488" ], "protein_name": "Protein argonaute 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "12445660b5c1f5a2f8cae4b16eb35b671dd0220e4315b1014a584b0b650052f9", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVRKRRTDAPSEGGEGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGRGGRGYGQPPQQQQQYGGPQEYQGRGRGGPPHQGGRGGYGGGRGGGPSSGPPQRQSVPELHQATSPTYQAVSSQPTLSEVSPTQVPEPTVLAQQFEQLSVEQGAPSQAIQPIPSSSKAFKFPMRPGKGQSGKRCIVKANHFFAELPDKDLHHYDVTITPEVTSRGVNRAVMKQLVDNYRDSHLGSRLPAYDGRKSLYTAGPLPFNSKEFRINLLDEEVGAGGQRREREFKVVIKLVARADLHHLGMFLEGKQSDAPQEALQVLDIVLRELPTSRYIPVGRSFYSPDIGKKQSLGDGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEANPVIQFVCDLLNRDISSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTAVATRELTFPVDERNTQKSVVEYFHETYGFRIQHTQLPCLQVGNSNRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPIDREKDILQTVQLNDYAKDNYAQEFGIKISTSLASVEARILPPPWLKYHESGREGTCLPQVGQWNMMNKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKEWKDPQKGVVTGGMIKELLIAFRRSTGHKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEAGYQPPVTFVVVQKRHHTRLFAQNHNDRHSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMAGRSTRGPNVNAAVRPLPALKENVKRVMFYC", "sequence_length": 1048, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "12445660b5c1f5a2f8cae4b16eb35b671dd0220e4315b1014a584b0b650052f9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O04379.json", "taxon_id": "3702", "uniprot_accession": "O04379", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gly-rich-ago1-pf12764.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12764", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gly-rich-ago1-pf12764.yaml" } ], "pfam_ids": [ "PF02170", "PF02171", "PF08699", "PF12764", "PF16486", "PF16487", "PF16488" ], "protein_name": "Protein argonaute 1A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFQLDNGYYSHQALAMMRKKKTEPRNAGESSGTQQATGAPGRGPSQRPERAQQHGGGGWQPANPQYAQQAGRGGGQHQGRGGRYQGRGGPTSHQPGGGPVEYQAHEYYGRGVQRQGGMPQHRSGSGGHGVPASPSRTVPELHQASQDQYQATVVAPSPSRTGPSSLPVEASSEEVQHQFQELAIQGQSPTSQAIQPAPPSSKSVRFPMRPGKGTFGDRCIVKANHFFAELPDKDLHQYDVSITPEVPSRGVNRAVIGEIVTQYRQSHLGGRLPVYDGRKSLYTAGPLPFTSRTFDVILQDEEESLAVGQGAQRRERPFKVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTARYSPVARSFYSPNLGRRQQLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVAQLLNRDISVRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELSFPIDNHGTVKTVVQYFQETYGFNIKHTTLPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPQERELDILQTVHHNAYHQDPYAQEFGIRIDERLASVEARVLPPPWLKYHDSGREKDVLPRIGQWNMMNKKMVNGGRVNNWTCINFSRHVQDNAARSFCRELAIMCQISGMDFSIDPVVPLVTARPEHVERALKARYQEAMNILKPQGGELDLLIAILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALTRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKVWKDPQRGTVSGGMIRELLISFKRATGQKPQRIIFYRDGVSEGQFYQVLFYELDAIRKACASLEADYQPPVTFVVVQKRHHTRLFANNHKDQRTVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDSGSMASGAHTRGGGPLPGARSTKPAGNVAVRPLPDLKENVKRVMFYC", "sequence_length": 1082, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3e3a7e23e81865a7a559413a64aac721eb091f936186849b12c3413dc4f34ada", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6EU14.json", "taxon_id": "39947", "uniprot_accession": "Q6EU14", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gly-rich-ago1-pf12764.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12764", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gly-rich-ago1-pf12764.yaml" } ], "pfam_ids": [ "PF02170", "PF02171", "PF08699", "PF12764", "PF16486", "PF16487", "PF16488" ], "protein_name": "Protein argonaute 1B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALQLENGRPHHHQVPIMVKKKRTGSGSTGESSGEAPGAPGHGSSQRAERGPQQHGGGRGWVPQHGGRGGGQYQGRGGHYQGRGGQGSHHPGGGPPEYQGRGGPGSHHPGGGPPDYQGRGGSGSHHPGGGPPEYQPRDYQGRGGPRPRGGMPQPYYGGPRGSGGRSVPSGSSRTVPELHQAPHVQYQAPMVSPTPSGAGSSSQPAAEVSSGQVQQQFQQLATRDQSSTSQAIQIAPPSSKSVRFPLRPGKGTYGDRCIVKANHFFAELPDKDLHQYDVSITPEVTSRGVNRAVMFELVTLYRYSHLGGRLPAYDGRKSLYTAGPLPFASRTFEITLQDEEDSLGGGQGTQRRERLFRVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTTRYSPVGRSFYSPNLGRRQQLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVAQLLNRDISVRPLSDSDRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELSFPVDDRGTVKTVVQYFLETYGFSIQHTTLPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPQERELDILRTVSHNAYHEDQYAQEFGIKIDERLASVEARVLPPPRLKYHDSGREKDVLPRVGQWNMMNKKMVNGGRVNNWACINFSRNVQDSAARGFCHELAIMCQISGMDFALEPVLPPLTARPEHVERALKARYQDAMNMLRPQGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALTRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKVWQDPHRGTVTGGMIKELLISFKRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNDQRTVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGAATSRGLPPGVRSARVAGNVAVRPLPALKENVKRVMFYC", "sequence_length": 1118, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0159effe1a6fedbed64898bd754ac9178fc384f1a56f57ea764f165505fc987d", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q7XSA2.json", "taxon_id": "39947", "uniprot_accession": "Q7XSA2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8CJG0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02170", "PF02171", "PF08699", "PF16486", "PF16487", "PF16488" ], "protein_name": "Protein argonaute-2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8969955281528046ab7f05551e18e491a0a179c953c6c4ca051e12ee588859e5", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MYSGAGPVLASPAPTTSPIPGYAFKPPPRPDFGTTGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA", "sequence_length": 860, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8969955281528046ab7f05551e18e491a0a179c953c6c4ca051e12ee588859e5", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CJG0.json", "taxon_id": "10090", "uniprot_accession": "Q8CJG0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/argol1-pf08699.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08699", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/argol1-pf08699.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gage-pf05831.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gage-pf05831.yaml" } ], "pfam_ids": [ "PF02170", "PF02171", "PF05831", "PF08699", "PF23278" ], "protein_name": "Piwi-like protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGRARARARGRARGQETAQLVGSTASQQPGYIQPRPQPPPAEGELFGRGRQRGTAGGTAKSQGLQISAGFQELSLAERGGRRRDFHDLGVNTRQNLDHVKESKTGSSGIIVRLSTNHFRLTSRPQWALYQYHIDYNPLMEARRLRSALLFQHEDLIGKCHAFDGTILFLPKRLQQKVTEVFSKTRNGEDVRITITLTNELPPTSPTCLQFYNIIFRRLLKIMNLQQIGRNYYNPNDPIDIPSHRLVIWPGFTTSILQYENSIMLCTDVSHKVLRSETVLDFMFNFYHQTEEHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLTGLTDKMRNDFNVMKDLAVHTRLTPEQRQREVGRLIDYIHKNDNVQRELRDWGLSFDSNLLSFSGRILQTEKIHQGGKTFDYNPQFADWSKETRGAPLISVKPLDNWLLIYTRRNYEAANSLIQNLFKVTPAMGMQMRKAIMIEVDDRTEAYLRVLQQKVTADTQIVVCLLSSNRKDKYDAIKKYLCTDCPTPSQCVVARTLGKQQTVMAIATKIALQMNCKMGGELWRVDIPLKLVMIVGIDCYHDMTAGRRSIAGFVASINEGMTRWFSRCIFQDRGQELVDGLKVCLQAALRAWNSCNEYMPSRIIVYRDGVGDGQLKTLVNYEVPQFLDCLKSIGRGYNPRLTVIVVKKRVNTRFFAQSGGRLQNPLPGTVIDVEVTRPEWYDFFIVSQAVRSGSVSPTHYNVIYDNSGLKPDHIQRLTYKLCHIYYNWPGVIRVPAPCQYAHKLAFLVGQSIHREPNLSLSNRLYYL", "sequence_length": 861, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "367e1f02b6ff58b59e6864670ebe0f848564b7b096de927956625ccb4141a3ff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96J94.json", "taxon_id": "9606", "uniprot_accession": "Q96J94", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/argomid-pf16487.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16487", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/argomid-pf16487.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/argon-pf16486.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/argon-pf16486.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/argol2-pf16488.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16488", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/argol2-pf16488.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9H9G7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02170", "PF02171", "PF08699", "PF16486", "PF16487", "PF16488" ], "protein_name": "Protein argonaute-3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "101a982da562fc0f0e294386abf46f27d65a0dff3749f920b9aba4be08e97fdc", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEIGSAGPAGAQPLLMVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA", "sequence_length": 860, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "101a982da562fc0f0e294386abf46f27d65a0dff3749f920b9aba4be08e97fdc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H9G7.json", "taxon_id": "9606", "uniprot_accession": "Q9H9G7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/argol1-pf08699.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08699", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/argol1-pf08699.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/argomid-pf16487.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16487", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/argomid-pf16487.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/argon-pf16486.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/argon-pf16486.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/argol2-pf16488.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16488", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/argol2-pf16488.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9HCK5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02170", "PF02171", "PF08699", "PF16486", "PF16487", "PF16488" ], "protein_name": "Protein argonaute-4", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "cf91c5a13557af33e68dbcd405773056a6c7ea8bdd09e7af512b3d5aba49fe40", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEALGPGPPASLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSVQWVSVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEISQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA", "sequence_length": 861, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "cf91c5a13557af33e68dbcd405773056a6c7ea8bdd09e7af512b3d5aba49fe40", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HCK5.json", "taxon_id": "9606", "uniprot_accession": "Q9HCK5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/argomid-pf16487.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16487", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/argomid-pf16487.yaml" } ], "pfam_ids": [ "PF02170", "PF02171", "PF08699", "PF16486", "PF16487", "PF16488" ], "protein_name": "Protein argonaute-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYSGAGPALAPPAPPPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA", "sequence_length": 859, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "66f862010eb73c9edffb8433d2b53f30ffbbb70b85515d47323e5ad03cc012c0", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UKV8.json", "taxon_id": "9606", "uniprot_accession": "Q9UKV8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/argol1-pf08699.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08699", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/argol1-pf08699.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/argon-pf16486.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/argon-pf16486.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/argol2-pf16488.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16488", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/argol2-pf16488.yaml" } ], "pfam_ids": [ "PF02170", "PF02171", "PF08699", "PF16486", "PF16487", "PF16488" ], "protein_name": "Protein argonaute-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA", "sequence_length": 857, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "098f61e386b868d4c07b9c7abe66aa22c3eaea7e9757060671eeb0aa43254b15", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UL18.json", "taxon_id": "9606", "uniprot_accession": "Q9UL18", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9VUQ5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02170", "PF02171", "PF08699", "PF16486", "PF16487", "PF16488" ], "protein_name": "Protein argonaute-2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d422f0a47de82aa74e381c373cddad6a294b52cf23fde134a493af2c9866eb0e", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGKKDKNKKGGQDSAAAPQPQQQQKQQQQRQQQPQQLQQPQQLQQPQQLQQPQQQQQQQPHQQQQQSSRQQPSTSSGGSRASGFQQGGQQQKSQDAEGWTAQKKQGKQQVQGWTKQGQQGGHQQGRQGQDGGYQQRPPGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHEQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQPNQTQSQGQYQSRGPPQQQQAAPLPLPPQPAGSIKRGTIGKPGQVGINYLDLDLSKMPSVAYHYDVKIMPERPKKFYRQAFEQFRVDQLGGAVLAYDGKASCYSVDKLPLNSQNPEVTVTDRNGRTLRYTIEIKETGDSTIDLKSLTTYMNDRIFDKPMRAMQCVEVVLASPCHNKAIRVGRSFFKMSDPNNRHELDDGYEALVGLYQAFMLGDRPFLNVDISHKSFPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDGKKVTIASYFHSRNYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATSTNVRKRKIMNLLQYFQHNLDPTISRFGIRIANDFIVVSTRVLSPPQVEYHSKRFTMVKNGSWRMDGMKFLEPKPKAHKCAVLYCDPRSGRKMNYTQLNDFGNLIISQGKAVNISLDSDVTYRPFTDDERSLDTIFADLKRSQHDLAIVIIPQFRISYDTIKQKAELQHGILTQCIKQFTVERKCNNQTIGNILLKINSKLNGINHKIKDDPRLPMMKNTMYIGADVTHPSPDQREIPSVVGVAASHDPYGASYNMQYRLQRGALEEIEDMFSITLEHLRVYKEYRNAYPDHIIYYRDGVSDGQFPKIKNEELRCIKQACDKVGCKPKICCVIVVKRHHTRFFPSGDVTTSNKFNNVDPGTVVDRTIVHPNEMQFFMVSHQAIQGTAKPTRYNVIENTGNLDIDLLQQLTYNLCHMFPRCNRSVSYPAPAYLAHLVAARGRVYLTGTNRFLDLKKEYAKRTIVPEFMKKNPMYFV", 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"MLLPALLFGMAWALADGRWCEWTETIRVEEEVAPRQEDLVPCASLDHYSRLGWRLDLPWSGRSGLTRSPAPGLCPIYKPPETRPAKWNRTVRTCCPGWGGAHCTEALAKASPEGHCFAMWQCQLQAGSANASAGSLEECCARPWGQSWWDGSSQACRSCSSRHLPGSASSPALLQPLAGAVGQLWSQHQRPSATCASWSGFHYRTFDGRHYHFLGRCTYLLAGAADSTWAVHLTPGDRCPQPGHCQRVTMGPEEVLIQAGNVSVKGQLVPEGQSWLLHGLSLQWLGDWLVLSGGLGVVVRLDRTGSISISVDHELWGQTQGLCGLYNGWPEDDFMEPGGGLAMLAATFGNSWRLPGSESGCLDAVEVAQGCDSPLGLIDADVEPGHLRAEAQDVCHQLLEGPFGQCHAQVSPAEYHEACLFAYCAGAMAGSGQEGRQQAVCATFASYVQACARRHIHIRWRKPGFCERLCPGGQLYSDCVSLCPPSCEAVGQGEEESCREECVSGCECPRGLFWNGTLCVPAAHCPCYYCRQRYVPGDTVRQLCNPCVCRDGRWHCAQALCPAECAVGGDGHYLTFDGRSYSFWGGQGCRYSLVQDYVKGQLLILLEHGACDAGSCLHAISVSLEDTHIQLRDSGAVLVNGQDVGLPWIGAEGLSVRRASSAFLLLRWPGAQVLWGLSDPVAYITLDPRHAHQVQGLCGTFTQNQQDDFLTPAGDVETSIAAFASKFQVAGKGRCPSEDSALLSPCTTHSQRHAFAEAACAILHSSVFQECHRLVDKEPFYLRCLAAVCGCDPGSDCLCPVLSAYARRCAQEGASPPWRNQTLCPVMCPGGQEYRECAPACGQHCGKPEDCGELGSCVAGCNCPLGLLWDPEGQCVPPSLCPCQLGARRYAPGSATMKECNRCICQERGLWNCTARHCPSQAFCPRELVYAPGACLLTCDSPSANHSCPAGSTDGCVCPPGTVLLDERCVPPDLCPCRHSGQWYLPNATIQEDCNVCVCRGRQWHCTGQRRSGRCQASGAPHYVTFDGLAFTYPGACEYLLVREASGLFTVSAQNLPCGASGLTCTKALAVRLEGTVVHMLRGRAVTVNGVSVTPPKVYTGPGLSLRRAGLFLLLSTHLGLTLLWDGGTRVLVQLSPQFRGRVAGLCGDFDGDASNDLRSRQGVLEPTAELAAHSWRLSPLCPEPGDLPHPCTMNTHRAGWARARCGALLQPLFTLCHAEVPPQQHYEWCLYDACGCDSGGDCECLCSAIATYADECARHGHHVRWRSQELCSLQCEGGQVYEACGPTCPPTCHEQHPEPGWHCQVVACVEGCFCPEGTLLHGGACLEPASCPCEWGRNSFPPGSVLQKDCGNCTCQEGQWHCGGDGGHCEELVPACAEGEALCQENGHCVPHGWLCDNQDDCGDGSDEEGCAAPGCGEGQMTCSSGHCLPLALLCDRQDDCGDGTDEPSYPCPQGLLACADGRCLPPALLCDGHPDCLDAADEESCLGQVTCVPGEVSCVDGTCLGAIQLCDGVWDCPDGADEGPGHCPLPSLPTPPASTLPGPSPGSLDTASSPLASASPAPPCGPFEFRCGSGECTPRGWRCDQEEDCADGSDERGCGGPCAPHHAPCARGPHCVSPEQLCDGVRQCPDGSDEGPDACGGLPALGGPNRTGLPCPEYTCPNGTCIGFQLVCDGQPDCGRPGQVGPSPEEQGCGAWGPWSPWGPCSRTCGPWGQGRSRRCSPLGLLVLQNCPGPEHQSQACFTAACPVDGEWSTWSPWSVCSEPCRGTMTRQRQCHSPQNGGRTCAALPGGLHSTRQTKPCPQDGCPNATCSGELMFQPCAPCPLTCDDISGQVTCPPDWPCGSPGCWCPEGQVLGSEGWCVWPRQCPCLVDGARYWPGQRIKADCQLCICQDGRPRRCRLNPDCAVDCGWSSWSPWAKCLGPCGSQSIQWSFRSSNNPRPSGRGRQCRGIHRKARRCQTEPCEGCEHQGQVHRVGERWHGGPCRVCQCLHNLTAHCSPYCPLGSCPQGWVLVEGTGESCCHCALPGENQTVQPMATPAAAPAPSPQIRFPLATYILPPSGDPCYSPLGLAGLAEGSLHASSQQLEHPTQAALLGAPTQGPSPQGWHAGGDAYAKWHTRPHYLQLDLLQPRNLTGILVPETGSSNAYASSFSLQFSSNGLHWHDYRDLLPGILPLPKLFPRNWDDLDPAVWTFGRMVQARFVRVWPHDVHHSDVPLQVELLGCEPGSPPAPLCPGVGLRCASGECVLRGGPCDGVLDCEDGSDEEGCVLLPEGTGRFHSTAKTLALSSAQPGQLLHWPREGLAETEHWPPGQESPTSPTETRPVSPGPASGVPHHGESVQMVTTTPIPQMEARTLPPGMAAVTVVPPHPVTPATPAGQSVAPGPFPPVQCGPGQTPCEVLGCVEQAQVCDGREDCLDGSDERHCARNLLMWLPSLPALWAASTVPFMMPTMALPGLPASRALCSPSQLSCGSGECLSAERRCDLRPDCQDGSDEDGCVDCVLAPWSVWSSCSRSCGLGLTFQRQELLRPPLPGGSCPRDRFRSQSCFVQACPVAGAWAMWEAWGPCSVSCGGGHQSRQRSCVDPPPKNGGAPCPGASQERAPCGLQPCSGGTDCELGRVYVSADLCQKGLVPPCPPSCLDPKANRSCSGHCVEGCRCPPGLLLHDTRCLPLSECPCLVGEELKWPGVSFLLGNCSQCVCEKGELLCQPGGCPLPCGWSAWSSWAPCDRSCGSGVRARFRSPSNPPAAWGGAPCEGDRQELQGCHTVCGTEVFGWTPWTSWSSCSQSCLAPGGGPGWRSRSRLCPSPGDSSCPGDATQEEPCSPPVCPVPSIWGLWAPWSTCSAPCDGGIQTRGRSCSSLAPGDTTCPGPHSQTRDCNTQPCTAQCPENMLFRSAEQCHQEGGPCPRLCLTQGPGIECTGFCAPGCTCPPGLFLHNASCLPRSQCPCQLHGQLYASGAMARLDSCNNCTCVSGKMACTSERCPVACGWSPWTLWSLCSCSCNVGIRRRFRAGTAPPAAFGGAECQGPTMEAEFCSLRPCPGPGGEWGPWSPCSVPCGGGYRNRTRGSSRSLMEFSTCGLQPCAGPVPGMCPRDKQWLDCAQGPASCAELSAPRGTNQTCHPGCHCPSGMLLLNNVCVPTQDCPCAHEGHLYPPGSTVVRPCENCSCVSGLIANCSSWPCAEGEPTWSPWTPWSQCSASCGPARCHRHRFCARSPSAVPSTVAPLPLPATPTPLCSGPEAEEEPCLLQGCDRAGGWGPWGPWSHCSRSCGGGLRSRTRACDQPPPQGLGDYCEGPRAQGEVCQALPCPVTNCTAIEGAEYSPCGPPCPRSCDDLVHCVWRCQPGCYCPPGQVLSSNGAICVQPGHCSCLDLLTGQRHHPGARLARPDGCNHCTCLEGRLNCTDLPCPVPGGWCPWSEWTMCSQPCRGQTRSRSRACACPTPQHGGAPCTGEAGEAGAQHQREACPSYATCPVDGAWGPWGPWSPCDMCLGQSHRSRACSRPPTPEGGRPCPGNHTQSRPCQENSTQCTDCGGGQSLHPCGQPCPRSCQDLSPGSVCQPGSVGCQPTCGCPLGQLSQDGLCVPPAHCRCQYQPGAMGIPENQSRSAGSRFSSWESLEPGEVVTGPCDNCTCVAGILQCQEVPDCPDPGVWSSWGPWEDCSVSCGGGEQLRSRRCARPPCPGPARQSRTCSTQVCREAGCPAGRLYRECQPGEGCPFSCAHVTQQVGCFSEGCEEGCHCPEGTFQHRLACVQECPCVLTAWLLQELGATIGDPGQPLGPGDELDSGQTLRTSCGNCSCAHGKLSCSLDDCFEADGGFGPWSPWGPCSRSCGGLGTRTRSRQCVLTMPTLSGQGCRGPRQDLEYCPSPDCPGAEGSTVEPVTGLPGGWGPWSSWSPCSRSCTDPARPAWRSRTRLCLANCTMGDPLQERPCNLPSCTELPVCPGPGCGAGNCSWTSWAPWEPCSRSCGVGQQRRLRAYRPPGPGGHWCPNILTAYQERRFCNLRACPVPGGWSRWSPWSWCDRSCGGGQSLRSRSCSSPPSKNGGAPCAGERHQARLCNPMPCEAGCPAGMEVVTCANRCPRRCSDLQEGIVCQDDQVCQKGCRCPKGSLEQDGGCVPIGHCDCTDAQGHSWAPGSQHQDACNNCSCQAGQLSCTAQPCPPPTHCAWSHWSAWSPCSHSCGPRGQQSRFRSSTSGSWAPECREEQSQSQPCPQPSCPPLCLQGTRSRTLGDSWLQGECQRCSCTPEGVICEDTECAVPEAWTLWSSWSDCPVSCGGGNQVRTRACRAAAPHHRSPPCLGPDTQTRQQPCPGLLEACSWGPWGPCSRSCGPGLASRSGSCPCLMAKADPTCNSTFLHLDTQGCYSGPCPEECVWSSWSSWTRCSCRVLVQQRYRHQGPASRGARAGAPCTRLDGHFRPCLISNCSEDSCTPPFEFHACGSPCAGLCATHLSHQLCQDLPPCQPGCYCPKGLLEQAGGCIPPEECNCWHTSAAGAGMTLAPGDRLQLGCKECECRRGELHCTSQGCQGLLPLSEWSEWSPCGPCLPPSALAPASRTALEEHWLRDPTGLSPTLAPLLASEQHRHRLCLDPATGRPWTGAPHLCTAPLSQQRLCPDPGACPDSCQWSLWGPWSPCQVPCSGGFRLRWREAEALCGGGCREPWAQESCNGGPCPESCEAQDTVFTLDCANQCPHSCADLWDRVQCLQGPCRPGCRCPPGQLVQDGRCVPISSCRCGLPSANASWELAPAQAVQLDCQNCTCVNESLVCPHQECPVLGPWSAWSSCSAPCGGGTMERHRTCEGGPGVAPCQAQDTEQRQECNLQPCPECPPGQVLSACATSCPCLCWHLQPGAICVQEPCQPGCGCPGGQLLHNGTCVPPTACPCTQHSLPWGLTLTLEEQAQELPPGTVLTRNCTRCVCHGGAFSCSLVDCQVPPGETWQQVAPGELGLCEQTCLEMNATKTQSNCSSARASGCVCQPGHFRSQAGPCVPEDHCECWHLGRPHLPGSEWQEACESCLCLSGRPVCTQHCSPLTCAQGEEMVLEPGSCCPSCRREAPEEQSPSCQLLTELRNFTKGTCYLDQVEVSYCSGYCPSSTHVMPEEPYLQSQCDCCSYRLDPESPVRILNLRCLGGHTEPVVLPVIHSCQCSSCQGGDFSKR", "sequence_length": 5150, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4a99a9733ab34b30a804580662eb1aba052deda96d6eadd9f808bf2f3f97d8f7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A2VEC9.json", "taxon_id": "9606", "uniprot_accession": "A2VEC9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/abfb-pf05270.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05270", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/abfb-pf05270.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fn1-vw-otogl-pf25960.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25960", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fn1-vw-otogl-pf25960.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O55225", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00094", "PF01826", "PF05270", "PF08742", "PF23244", "PF25960", "PF25961", "PF25962" ], "protein_name": "Otogelin", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4ab424e994c513dba5fbc6e9daafad932c8f9be945b69bed9d836c54831e2e71", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGARMPRRCLLLLSCFCLLRVESTAEVQHQASALTWKISAELQQEPAPEPSHTYQEMSLAVEDVTTVMEGQEAEALAASAMSSWERRLHRAKCAPSYLFSCFNGGECVHPALCDCRRFNATGPRCQLVYNVGPERDSICRTWGQHHVETFDGLYYYFSGKGSYTLVGHHEPEGQSFSIQVHNDPQCGSAHYTCPRSVSLFLSGEREICLAKEVTHGGVRVQLPQVVGGVQLQQLAGYVIARHPSAFTLAWDGISAIYIKMSPEFLGWTHGLCGNNNADPQDDLVTSYGKVTDDVGEFVHSWQEQVPNSPPGPVTTSLPRPPCLQQSPASMQGVYERCEVLLRPPFDTCHAYVSPLPFAASCTSDLCQSGGDEATWCRALMEYARACAQAGRPLQGWRTQLSQCTVHCKEKAFIYNECIACCPASCQSRASCVDSEITCVDGCYCPNGLIFEDGGCMSPAECPCEFHGTLHPPGSVVTEDCNACTCTAGKWVCSSSVCPAECSVTGDIHFTTFDGRRYTFPATCQYILAKSRSSGTFTVTLQNAPCGLNQDGACVQSVSVILHQDPRRQVTLTQAGDVLLFDQYKITPPYSDDAFEIRRLSSVFLRVRTNVGVRILYDREGLRLYLQVDQRWVEDTVGLCGTFNGNTQDDFLSPVGVPESTPQLFGNSWKTLSACVPLVPGSLLDPCDVHLQAASYALQSCSVLTGELFAPCSAYLSPIPYFEQCRRDACRCGQPCLCATLAHYARLCRRHGLPVDFRAHLPACALSCEATKEYSPCVTLCAPTCQDLASPDVCGANGGGNFSREECVEGCTCPPDTFLDTQADLCVPRNQCSCHFQGVDYPPGDSDIPSLGHCHCKDGVMSCDSRAPAAACPAGQVFVNCSELHPDPELSRERTCEQQLLNLSVPARGPCLSGCACPQGLLRHGDACFPPEECPCTWKGKEYFPGDQVVSSCHTCVCQRGSFQCTLHPCASTCTAYGDRHYRTFDGLPYDFVGACKVHLVKSTSELSFSVMVEDVNCYGSGVICRKSISINVGSSLIIFDDDSGDPSPESFLDEKQAVHIWRAGFFTLVHFPREHITLLWDQRTTVHVQAGPQWQGQLVGLCGNFDLKTINEMRTPENLELTNPQEFGSSWAAVECPDTPDPRDTCVLNPLREPFARKECGILLSEVFETCHPVVDVTWFYSNCLTDTCGCSRGGDCECFCASVAAYAHQCCQHGVVIDWRTPRICPYDCDFFNKALGKGPYQLSSVAAGGTLVATKAVDSDIALVRAEDLAPGDISSFLLTAALYKAKAHDPDVVSLEAADRPNFFLHTTANGSIGLAKWQRDEAFHQHASFSLHRGTWQAGLVALESLAKPGSFLHSSGLELALRAYEHTEVFRGGALFRLLDAKPLGAAYPTCEWRYDACASPCFQTCRDPRATSCQDVPRVEGCVPVCPTPKVLDEVTQRCVYLEDCVEPAPRGPTETLGNETLVPGQVPPTTSAEQQLPQGLPGASAYSPAPVPVAPPTSAPNPPMAATEGQAPSPGSTQPTLQTPLGLTTSNFPAGHTEATAREEGAASLLTTSHPPGFSSSLPSSLQMPTSGIVSGATETTKVTITFTGSPNTTVASRSPPIPRFPLMTKAVTVPSHDSFPVKTTPLQPSWLWSLSSRPMTSLGATSWPPTSPGSHLSTAVTKVANKTMTSLSVLAQSTSSSSQPLAAVTTAHRAPASPLVTKGLEVVSATEKGEAGHSQLTELPVSPPPSPAPIDLPHPAQHTTTAPGPSALSPGILAAGSPSTGAHRPGATALASLEPTRPPHLLSGLPLDTSLPLAKVGTSAPVATPGSKGYIPTPPPQHQATTLATAMTVSPLTQSLSLTVPLMSAVEEQAHSPSPKPPQGTGMAPDQMLGATLPSFGASSVIAGVPPTVSAAPRKSTTQRAAILSKKVSPPTLISDSVQGGFTELTPIVSHTVTPLATEAEGPRAGTVPLVPTTYSLSRVSARTASREGPLVLLPQLAEAYGTPAGLQPQEDLVRQATTEQSGRSAPAKSIAEESMEAEVNTSATCVPIAEQDCVRHICLEGQLIRVNQTQHCPQGAVRPRCGVLGLAVRVGGDRCCPQWECACRCSIFPDLSFVTFDGSHAALFKEAIYVLSQSPDETISVHVLDCKSANLGHLNWPPFCLVILNVTHLAHHVSIDRFNRKVTVDSQVVWPPMSRYGFRIEDTGHMYIVRTPSHIQIQWLHSSGLMILEASKVSKTQGHGLCGICDGDAANDLTLKDGSVLGEAEDPAPFLDSWQVPSSLTSEGQTRFRPDSCATADCSPCLRMVSNRTFSACHSFVSPESFCELWIRDTKYVQQPCVALTVYVAMCHKFHVCIEWRGSDYCPFLCSSDSTYQACVAACEPPDTCQDGILGPLDPEQCQVLGEGCVCTEGTILHRRHSALCIPEDKCACTDSTGVPRALGETWNSSLSGCCQQQCQAPDTIIPVDLDCPGPRPESCPRFGEVILLQPTEDPCCLGSVCVCNQTLCEGLAPTCRPGHSLITHFQEDSCCPSYSCECDPGLCEAEQVPTCREDQILIEGRLGDSCCTSYFCGCGECSDPMPECQEGEALTVHRNTTELCCPLYQCVCENFRCPQVQCGMGTSLVEVWSPDRCCPYKSCECDCDTIPVPRCHLWEKSQLDEEFMHSVENVCGCAKYECVKAPVCLSRELGVMQPGQTVVELSADGVCHTSRCTDVLDPLTNFYQINITSVLCDMHCEANQEYDHPRDLAACCGSCRNVSCLFTFPNGTTSLFLPGASWIADCARHHCGSTPLGAVLVRSPISCPPFNETECAKVGGSVVPSLEGCCRACKEDGRSCKKVTIRMTIRKNDCRSNTPVNLVSCDGRCPSASIYNHNINTYARFCKCCREVGLQRRSVQLFCATNATWVPYTVQEPTDCACQWS", "sequence_length": 2911, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4ab424e994c513dba5fbc6e9daafad932c8f9be945b69bed9d836c54831e2e71", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O55225.json", "taxon_id": "10090", "uniprot_accession": "O55225", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/zp-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00682", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/zp-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O75443", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00094", "PF00100", "PF01826", "PF06119", "PF08742", "PF12714" ], "protein_name": "Alpha-tectorin", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "617b1ec05ba1acdb539a6171032d4e3b6c0e948166759f9c5c17b902366f48f0", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNYSSFLRIWVSFIFALVQHQAQPRELMYPFWQNDTKTPKVDDGSSSEIKLAIPVFFFGVPYRTVYVNNNGVVSFNVLVSQFTPESFPLTDGRAFVAPFWADVHNGIRGEIYYRETMEPAILKRATKDIRKYFKDMATFSATWVFIVTWEEVTFYGGSSTTPVNTFQAVLVSDGSYTFTLFNYYEINWTTGTASGGDPLTGLGGVMAQAGFNGGNLTNFFSLPGSRTPEIVNIQETTNVNVPGRWAFKVDGKEIDPANGCTSRGQFLRRGEVFWDDLNCTVKCRCLDFNNEIYCQEASCSPYEVCEPKGKFFYCSAVETSTCVVFGEPHYHTFDGFLFHFQGSCAYLLARQCLQTSSLPFFSVEAKNEHRRGSAVSWVKELSVEVNGYKILIPKGSYGRVKVNDLVTSLPVTLDLGTVKIYQSGISTAVETDFGLLVTFDGQHYASISVPGSYINSTCGLCGNYNKNPLDDFLRPDGRPAMSVLDLGESWRVYHADWKCDSGCVDNCTQCDAATEALYFGSDYCGFLNKTDGPLWECGTVVDPTAFVHSCVYDLCSVRDNGTLLCQAIQAYALVCQALGIPIGDWRTQTGCVSTVQCPSFSHYSVCTSSCPDTCSDLTASRNCATPCTEGCECNQGFVLSTSQCVPLHKCGCDFDGHYYTMGEFFWATANCTVQCLCEEGGDVYCFNKTCGSGEVCAVEDGYQGCFPKRETVCLLSQNQVLHTFDGASYAFPSEFSYTLLKTCPERPEYLEIDINKKKPDAGPAWLRGLRILVADQEVKIGGIGASEVKLNGQEVELPFFHPSGKLEIYRNKNSTTVESKGVVTVQYSDIGLLYIRLSTTYFNCTGGLCGFYNANASDEFCLPNGKCTDNLAVFLESWTTFEEICNGECGDLLKACNNDSELLKFYRSRSRCGIINDPSNSSFLECHGVVNVTAYYRTCLFRLCQSGGNESELCDSVARYASACKNADVEVGPWRTYDFCPLECPENSHFEECITCTETCETLTLGPICVDSCSEGCQCDEGYALLGSQCVTRSECGCNFEGHQLATNETFWVDLDCQIFCYCSGTDNRVHCETIPCKDDEYCMEEGGLYYCQARTDASCIVSGYGHYLTFDGFPFDFQTSCPLILCTTGSRPSSDSFPKFVVTAKNEDRDPSLALWVKQVDVTVFGYSIVIHRAYKHTVLVNSERLYLPLKLGQGKINIFSFGFHVVVETDFGLKVVYDWKTFLSITVPRSMQNSTYGLCGRYNGNPDDDLEMPMGLLASSVNEFGQSWVKRDTFCQVGCGDRCPSCAKVEGFSKVQQLCSLIPNQNAAFSKCHSKVNPTFFYKNCLFDSCIDGGAVQTACSWLQNYASTCQTQGITVTGWRNYTSCTVTCPPNSHYESCVSVCQPRCAAIRLKSDCSHYCVEGCHCDAGYVLNGKSCILPHSCGCYSDGKYYEPKQLFWNSDCTRRCRCFRRNVIQCDPRQCKSDEECALRNGVRGCFSTKTSYCLAAGGGVFRTFDGAFLRFPANCAFVLSTICQKLPDISFQLIINFDKWSAPNLTIISPVYFYINEEQILINDRNTVKVNGTQVNVPFITGLATKIYSSEGFLVIDTSPDIQIYYNGFNVIKISISERLQNKVCGLCGNFNGDLTDDYVTLRGKPVVSSVVLAQSWKTNGMQKRPLAPSCNELQFSQYAAMCDNVHIQKMQGDGYCLKLTDMKGFFQPCYGLLDPLPFYESCYLDGCYSHKKFQLCGSLAAYGEACRSFGILSTEWIEKENCSGVVEDPCVGADCPNRTCELGNGRELCGCIEPPPYGNNSHDIIDAEVTCKAAQMEVSISKCKLFQLGFEREGVRINDRQCTGIEGEDFISFQINNTKGNCGNIVQSNGTHIMYKNTLWIESANNTGNIITRDRTINVEFSCAYELDIKISLDSVVKPMLSVINLTVPTQEGSFITKMALYKNASYKHPYRQGEVVLTTRDVLYVGVFVVGADATHLILTLNKCYATPTRDSNDKLRYFIIEGGCQNLKDNTIGIEENAVSLTCRFHVTVFKFIGDYDEVHLHCAVSLCDSEKYSCKITCPHNSRIATDYTKEPKEQIISVGPIRRKRLDWCEDNGGCEQICTSRVDGPLCSCVTGTLQEDGKSCRASNSSMELQVWTLLLIMIQISLWHFVYKSGTTS", "sequence_length": 2155, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "617b1ec05ba1acdb539a6171032d4e3b6c0e948166759f9c5c17b902366f48f0", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O75443.json", "taxon_id": "9606", "uniprot_accession": "O75443", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/ctck-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01185", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/ctck-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/vwfc-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01208", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/vwfc-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P04275", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00092", "PF00093", "PF00094", "PF01826", "PF08742", "PF16164", "PF23244", "PF25962" ], "protein_name": "von Willebrand factor", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "91a132cac0ed8c1777c8e469b380ff01451ee3a9e522eee8895f8030f3cd839c", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MIPARFAGVLLALALILPGTLCAEGTRGRSSTARCSLFGSDFVNTFDGSMYSFAGYCSYLLAGGCQKRSFSIIGDFQNGKRVSLSVYLGEFFDIHLFVNGTVTQGDQRVSMPYASKGLYLETEAGYYKLSGEAYGFVARIDGSGNFQVLLSDRYFNKTCGLCGNFNIFAEDDFMTQEGTLTSDPYDFANSWALSSGEQWCERASPPSSSCNISSGEMQKGLWEQCQLLKSTSVFARCHPLVDPEPFVALCEKTLCECAGGLECACPALLEYARTCAQEGMVLYGWTDHSACSPVCPAGMEYRQCVSPCARTCQSLHINEMCQERCVDGCSCPEGQLLDEGLCVESTECPCVHSGKRYPPGTSLSRDCNTCICRNSQWICSNEECPGECLVTGQSHFKSFDNRYFTFSGICQYLLARDCQDHSFSIVIETVQCADDRDAVCTRSVTVRLPGLHNSLVKLKHGAGVAMDGQDVQLPLLKGDLRIQHTVTASVRLSYGEDLQMDWDGRGRLLVKLSPVYAGKTCGLCGNYNGNQGDDFLTPSGLAEPRVEDFGNAWKLHGDCQDLQKQHSDPCALNPRMTRFSEEACAVLTSPTFEACHRAVSPLPYLRNCRYDVCSCSDGRECLCGALASYAAACAGRGVRVAWREPGRCELNCPKGQVYLQCGTPCNLTCRSLSYPDEECNEACLEGCFCPPGLYMDERGDCVPKAQCPCYYDGEIFQPEDIFSDHHTMCYCEDGFMHCTMSGVPGSLLPDAVLSSPLSHRSKRSLSCRPPMVKLVCPADNLRAEGLECTKTCQNYDLECMSMGCVSGCLCPPGMVRHENRCVALERCPCFHQGKEYAPGETVKIGCNTCVCQDRKWNCTDHVCDATCSTIGMAHYLTFDGLKYLFPGECQYVLVQDYCGSNPGTFRILVGNKGCSHPSVKCKKRVTILVEGGEIELFDGEVNVKRPMKDETHFEVVESGRYIILLLGKALSVVWDRHLSISVVLKQTYQEKVCGLCGNFDGIQNNDLTSSNLQVEEDPVDFGNSWKVSSQCADTRKVPLDSSPATCHNNIMKQTMVDSSCRILTSDVFQDCNKLVDPEPYLDVCIYDTCSCESIGDCACFCDTIAAYAHVCAQHGKVVTWRTATLCPQSCEERNLRENGYECEWRYNSCAPACQVTCQHPEPLACPVQCVEGCHAHCPPGKILDELLQTCVDPEDCPVCEVAGRRFASGKKVTLNPSDPEHCQICHCDVVNLTCEACQEPGGLVVPPTDAPVSPTTLYVEDISEPPLHDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRITLLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPPPTLPPDMAQVTVGPGLLGVSTLGPKRNSMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRVREIRYQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIKRLPGDIQVVPIGVGPNANVQELERIGWPNAPILIQDFETLPREAPDLVLQRCCSGEGLQIPTLSPAPDCSQPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKAHLLSLVDVMQREGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDSVDAAADAARSNRVTVFPIGIGDRYDAAQLRILAGPAGDSNVVKLQRIEDLPTMVTLGNSFLHKLCSGFVRICMDEDGNEKRPGDVWTLPDQCHTVTCQPDGQTLLKSHRVNCDRGLRPSCPNSQSPVKVEETCGCRWTCPCVCTGSSTRHIVTFDGQNFKLTGSCSYVLFQNKEQDLEVILHNGACSPGARQGCMKSIEVKHSALSVELHSDMEVTVNGRLVSVPYVGGNMEVNVYGAIMHEVRFNHLGHIFTFTPQNNEFQLQLSPKTFASKTYGLCGICDENGANDFMLRDGTVTTDWKTLVQEWTVQRPGQTCQPILEEQCLVPDSSHCQVLLLPLFAECHKVLAPATFYAICQQDSCHQEQVCEVIASYAHLCRTNGVCVDWRTPDFCAMSCPPSLVYNHCEHGCPRHCDGNVSSCGDHPSEGCFCPPDKVMLEGSCVPEEACTQCIGEDGVQHQFLEAWVPDHQPCQICTCLSGRKVNCTTQPCPTAKAPTCGLCEVARLRQNADQCCPEYECVCDPVSCDLPPVPHCERGLQPTLTNPGECRPNFTCACRKEECKRVSPPSCPPHRLPTLRKTQCCDEYECACNCVNSTVSCPLGYLASTATNDCGCTTTTCLPDKVCVHRSTIYPVGQFWEEGCDVCTCTDMEDAVMGLRVAQCSQKPCEDSCRSGFTYVLHEGECCGRCLPSACEVVTGSPRGDSQSSWKSVGSQWASPENPCLINECVRVKEEVFIQQRNVSCPQLEVPVCPSGFQLSCKTSACCPSCRCERMEACMLNGTVIGPGKTVMIDVCTTCRCMVQVGVISGFKLECRKTTCNPCPLGYKEENNTGECCGRCLPTACTIQLRGGQIMTLKRDETLQDGCDTHFCKVNERGEYFWEKRVTGCPPFDEHKCLAEGGKIMKIPGTCCDTCEEPECNDITARLQYVKVGSCKSEVEVDIHYCQGKCASKAMYSIDINDVQDQCSCCSPTRTEPMQVALHCTNGSVVYHEVLNAMECKCSPRKCSK", "sequence_length": 2813, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "91a132cac0ed8c1777c8e469b380ff01451ee3a9e522eee8895f8030f3cd839c", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P04275.json", "taxon_id": "9606", "uniprot_accession": "P04275", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c8-pf08742.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c8-pf08742.yaml" } ], "pfam_ids": [ "PF00094", "PF01826", "PF08742", "PF13330", "PF23244", "PF25962" ], "protein_name": "Mucin-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGLPLARLAAVCLALSLAGGSELQTEGRTRNHGHNVCSTWGNFHYKTFDGDVFRFPGLCDYNFASDCRGSYKEFAVHLKRGPGQAEAPAGVESILLTIKDDTIYLTRHLAVLNGAVVSTPHYSPGLLIEKSDAYTKVYSRAGLTLMWNREDALMLELDTKFRNHTCGLCGDYNGLQSYSEFLSDGVLFSPLEFGNMQKINQPDVVCEDPEEEVAPASCSEHRAECERLLTAEAFADCQDLVPLEPYLRACQQDRCRCPGGDTCVCSTVAEFSRQCSHAGGRPGNWRTATLCPKTCPGNLVYLESGSPCMDTCSHLEVSSLCEEHRMDGCFCPEGTVYDDIGDSGCVPVSQCHCRLHGHLYTPGQEITNDCEQCVCNAGRWVCKDLPCPGTCALEGGSHITTFDGKTYTFHGDCYYVLAKGDHNDSYALLGELAPCGSTDKQTCLKTVVLLADKKKNVVVFKSDGSVLLNELQVNLPHVTASFSVFRPSSYHIMVSMAIGVRLQVQLAPVMQLFVTLDQASQGQVQGLCGNFNGLEGDDFKTASGLVEATGAGFANTWKAQSSCHDKLDWLDDPCSLNIESANYAEHWCSLLKKTETPFGRCHSAVDPAEYYKRCKYDTCNCQNNEDCLCAALSSYARACTAKGVMLWGWREHVCNKDVGSCPNSQVFLYNLTTCQQTCRSLSEADSHCLEGFAPVDGCGCPDHTFLDEKGRCVPLAKCSCYHRGLYLEAGDVVVRQEERCVCRDGRLHCRQIRLIGQSCTAPKIHMDCSNLTALATSKPRALSCQTLAAGYYHTECVSGCVCPDGLMDDGRGGCVVEKECPCVHNNDLYSSGAKIKVDCNTCTCKRGRWVCTQAVCHGTCSIYGSGHYITFDGKYYDFDGHCSYVAVQDYCGQNSSLGSFSIITENVPCGTTGVTCSKAIKIFMGRTELKLEDKHRVVIQRDEGHHVAYTTREVGQYLVVESSTGIIVIWDKRTTVFIKLAPSYKGTVCGLCGNFDHRSNNDFTTRDHMVVSSELDFGNSWKEAPTCPDVSTNPEPCSLNPHRRSWAEKQCSILKSSVFSICHSKVDPKPFYEACVHDSCSCDTGGDCECFCSAVASYAQECTKEGACVFWRTPDLCPIFCDYYNPPHECEWHYEPCGNRSFETCRTINGIHSNISVSYLEGCYPRCPKDRPIYEEDLKKCVTADKCGCYVEDTHYPPGASVPTEETCKSCVCTNSSQVVCRPEEGKILNQTQDGAFCYWEICGPNGTVEKHFNICSITTRPSTLTTFTTITLPTTPTTFTTTTTTTTPTSSTVLSTTPKLCCLWSDWINEDHPSSGSDDGDRETFDGVCGAPEDIECRSVKDPHLSLEQLGQKVQCDVSVGFICKNEDQFGNGPFGLCYDYKIRVNCCWPMDKCITTPSPPTTTPSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLTTTPLPPSITPPTFSPFSTTTPTTPCVPLCNWTGWLDSGKPNFHKPGGDTELIGDVCGPGWAANISCRATMYPDVPIGQLGQTVVCDVSVGLICKNEDQKPGGVIPMAFCLNYEINVQCCECVTQPTTMTTTTTENPTPTPITTTTTVTPTPTPTSTQSTTPTPITTTNTVTPTPTPTGTQTPTPTPITTTTTMVTPTPTITSTQTPTPTPITTTTVTPTPTPTSTQRTTPTSITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPISTTTMVTPTPTPTGTQTLTPTPITTTTTVTPTPTPTGTQTPTSTPISTTTTVTPTPTPTGTQTPTLTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTKSTTPTSITTTTMVTPTPPPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTPTPITTTTTVTPTPTPTGTQTPTSTPITTNTTVTPTPTPTGTPSTTLTPITTTTMVTPTPTPTGTQTPTSTPISTTTTVTPTPTPTGTQTPTPTPISTTTTVTPTPTPTSTQTPTTTPITTTTTVTPNPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPISTTTTVTPTPTPTGTQTPTTTAITTTTTVTPTPTPTGTQTPTSTPITTTTTVTPTPTPTGTQTPTSTPISNTTTVTPTPTPTGTQTPTVTPITTTTTVTPTRTPTGTKSTTPTSITTTTMVTPTPTPTGTHTPTTTPITTTTTVTPTPTPTGTQTPTPTPITTTTTVTPTPTPTGTQTPTSTPITTTTTVTPTPTPTGTQTPTTTPITTNTTVTPTPTPTGTQTPTTVLITTTTTMTPTPTPTSTKSTTVTPITTTTTVTPTPTPTGTQSTTLTPITTTTTVTPTPTPTGTQTPTTTPISTTTTVIPTPTPTGTQTPTSTPITTTTTVTPTPTPTGTQTPTSTPISTTTTVTPTATPTGTQTPTLTPITTTTTVTSTPTPTGTQTPTPTPITTTTTVTPTPTPTSTQTPTSTPITTTTTVTPTPTPTGTQTPTTTHITTTTTVTPTPTPTGTQAPTPTAITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQSPTPTAITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQSTTLTPITTTTTVTPIPTPTGTQTPTSTPITTTITVTPTPTPTGTQTPTPTPISTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPISTTTTVTPTPTPTGTQTPTSTPITTTTTVTPTPTPTGTQTPTPTPITTTTTVTPTPTPTGTQTPTSTPITTTTTVTPTPTPTGTQTPTPTPITTTTTVTPTPTPTGTQTPTSTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQSTTLTPITTTTTVTPTPTPTGTQTPTSTPITTTTTVTPTPTGTQTPTPTPISTTTTVTPTPTPTGTQTPTMTPITTTTTVTPTPTPTGTQTPTTTPISTTTTVTPTPTPTGTQTPTSTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQSTTLTPITTTTTVTPTPTPTGTQTPTPTPISTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPISTTTTVTPTPTPTGTQTPTSTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQAPTPTAITTTTTVTPTPTPTGTQTPTTTPITTTTMVTPTPTPTGTQTPTSTPITTTTTVTPTPTPTGTQTPTPTPISTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPISTTTTVTPTPTPTGTQTPTSTPITTTTTVTPTPTPTGTQTPTPTPITTTTTVTPTPTPTGTQTPTSTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQSTTLTPITTTTTVTPTPTPTGTQTPTSTPITTTTTVTPTPTPTGTQTPTPTPISTTSTVTPTPTPTGTQTPTMTPITTTTTVTPTPTPTGTQTPTSTPITTTTTVTPTPTPTGTQTPTMTPITTTTTVTPTPTPTGTQAPTPTAITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQSTTLTPITTTTTVTPTPTPTGTQTPTPTPISTTTTVTPTPTPTGTQTPTMTPITTTTTVTPTPTPTGTQTPTTTPISTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPISTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPISTTTTVTPTPTPTGTQTPTSTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQAPTPTAITTTSTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQSPTPTAITTTTTVTPTPTPTGTQTPTLTPITTTTTVTPTPTPTGTQTPTPTPISTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTVLITTTTTMTPTPTPTSTKSTTVTPITTTTTVTATPTPTGTQTPTMIPISTTTTVTPTPTPTTGSTGPPTHTSTAPIAELTTSNPPPESSTPQTSRSTSSPLTESTTLLSTLPPAIEMTSTAPPSTPTAPTTTSGGHTLSPPPSTTTSPPGTPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTPLSTPSIIRTTGLRPYPSSVLICCVLNDTYYAPGEEVYNGTYGDTCYFVNCSLSCTLEFYNWSCPSTPSPTPTPSKSTPTPSKPSSTPSKPTPGTKPPECPDFDPPRQENETWWLCDCFMATCKYNNTVEIVKVECEPPPMPTCSNGLQPVRVEDPDGCCWHWECDCYCTGWGDPHYVTFDGLYYSYQGNCTYVLVEEISPSVDNFGVYIDNYHCDPNDKVSCPRTLIVRHETQEVLIKTVHMMPMQVQVQVNRQAVALPYKKYGLEVYQSGINYVVDIPELGVLVSYNGLSFSVRLPYHRFGNNTKGQCGTCTNTTSDDCILPSGEIVSNCEAAADQWLVNDPSKPHCPHSSSTTKRPAVTVPGGGKTTPHKDCTPSPLCQLIKDSLFAQCHALVPPQHYYDACVFDSCFMPGSSLECASLQAYAALCAQQNICLDWRNHTHGACLVECPSHREYQACGPAEEPTCKSSSSQQNNTVLVEGCFCPEGTMNYAPGFDVCVKTCGCVGPDNVPREFGEHFEFDCKNCVCLEGGSGIICQPKRCSQKPVTHCVEDGTYLATEVNPADTCCNITVCKCNTSLCKEKPSVCPLGFEVKSKMVPGRCCPFYWCESKGVCVHGNAEYQPGSPVYSSKCQDCVCTDKVDNNTLLNVIACTHVPCNTSCSPGFELMEAPGECCKKCEQTHCIIKRPDNQHVILKPGDFKSDPKNNCTFFSCVKIHNQLISSVSNITCPNFDASICIPGSITFMPNGCCKTCTPRNETRVPCSTVPVTTEVSYAGCTKTVLMNHCSGSCGTFVMYSAKAQALDHSCSCCKEEKTSQREVVLSCPNGGSLTHTYTHIESCQCQDTVCGLPTGTSRRARRSPRHLGSG", "sequence_length": 5289, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "253e9ca566afe9db20016436aee017dc0f9df68ebccb260c1128bf9ec7dfd764", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q02817.json", "taxon_id": "9606", "uniprot_accession": "Q02817", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fn1-vw-otogl-pf25960.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25960", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fn1-vw-otogl-pf25960.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q3ZCN5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00094", "PF01826", "PF05270", "PF08742", "PF25960", "PF25961", "PF25962" ], "protein_name": "Otogelin-like protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "9f1c97145fbc82b0d7a1e41079776483332ddd923c7636cc6fa0c8fa8f588774", "sequence_version": 6, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNIVRKLNLMIPWSIFLLHVLLFSLQEYICASSILMGTSKNGFNENRQKRALLAAQFEATSPRYFFHDAINWGESKIKGSCPYECLNGAFCSKTGTCDCQIFQALGTRCQIIPNMGNGRDGICKTWGQYHFETFDGIYYYFPGNCSYIFAKDCGDLEPRYTVWVHNSPKCLGSVYSCYRSISLFFSNQEEIRIYGHEIKKNGISLTLPQTIGQIFIEKLADYILVKTTFGFSLAWDGISGIYLKLSEDHKGKSCGLCGNYNDIQSDDFIILQEDYTEDIAMFANSWSVQTPDDTKCVLTPSDFPNPCSSGMPAFEAIFFKCQILLQFPFLSCHEYIDPYLYIASCVNDLCKTDDDETYCRAATEYARACSHAGYPIQDWRDDFPACTDKCDDSFVHRDCISCCPPTCTFEKQCLGSNLHCLDGCYCPDGLVMDNGTCISLENCPCGFHGLAYSVGSKIEQECTECVCVGGVWNCTEQDCPVQCSVVGDSHFTTFDGRHYSFIGMCQYILVKGTGKDKFTITLQKAPCEQNLGLVCLQSITLILEDDFNKQVTLGRGGQILTSPNQGFNLNGIVEIQTLSSLFILLKTTFGLKILFAIDGERIYIQLTSAWKRRTLGLCGTFNGNIRDDFLSPSGMIEGTPQLHANAWRVSSTCFAPVHVPVVDPCNINQQNIGYAAHCDVIHQELFAPCHIYISPGLYYQLCRHDACKCGSSCLCNALAHYAYLCGQHGVPIDFRTQISFCAVVCQKGMLYHHCSSFCLHSCISLSSPEQCSDDCAEGCNCPEGKFYEDTLNFCVPIFHCRCHYRGSVYQPGELIPTPSGLCQCSNGTVKCDELATPSAVHICPEGKEYFDCRFPDPELPAGGVNCETTCANLAMNFTCTPSSPCISGCVCAPGMAEHRGKCYVPESCPCIWKDWEYLSGEVIATPCYTCVCRRGMFNCTYYPCPAVCTIYGDRHYYSFDGLEYDYISDCQVFLIKSADDSDISVIAQNKKCFDNDIVCSKSVLISVGDTEIYLNDTPYKQKQSGFFLENKSTYQLWKAGYYIVVYFPEKDITILWDRKTTIHIKVGPQWKNKLSGLCGNFDKCTSNDMTTSNNLEVRNARVFGDSWALGQCESPDETIKPCEAHQNKFPYAKKECSILYSDIFASCRNVIDVTSFAKNCHEDTCNCNLGGDCECLCTSIAAYAYKCCQEGISIHWRSSTVCSLDCEYYNEGLGEGPYMLASYGQSGLVLGANMTSRSVFCLPRSSVHTSLFFYFMITPGLFKEKVSSLALVSLESAERPNYFLYVHDNDTLSLELWEANSAFHRRATFFHHQGLWIPGYSAFELYSKKGFFIIFTDSSVKASKYDDSEEFKHSSSFSIEEIQAAVPYRKMCEWRYEPCATPCFKTCSDPEALACKFLPPVEGCLPYCPKNMILDEVTLKCVYPRDCIPVIPTEPTLMPPAKPTVPMFTVWEMITPSDITVFDMLTPTTGLECEPQKFDPVYDCSQYICLNMEWQLYNWSLNCPKDVEMPDCGFRGRPVQVNSDICCPEWECPCRCSMLSELSIITFDGNNAALYSMASYILVRIPGEIIVAHIEKCSMNQNGNSLKKLAPSGRISGLCFKKLNVTTPIHKIIVNRLARKVEVDSIVVPLPFSSQELSIEDSGSMYVITTPAGLIIKWSHLTGIIDIHFGFRFNLSSYTEGLCGICNEDPDDDLRMQNGTIITNMEDIGLFIESWEIEKSFEVTMRRPVRNCTEHDCSQCIDLLNRRIFIPCHDKVSPEDFCEKMWINYTYFWNYECDALSAYVALCNKFDICIQWRTPDYCSLSCPEGKEYQPCVRPCEARTCLNQWFYGHTSCLNLREDCVCKVGTILHRPHSAQCIPEKECACTDSEDQPRTAGEIWNGGIDECTLYKCLENGSIIPIEPDCDEEPTPVCEREAEVVMGIIDKWTCCSKEVCGCDTTLCETSIPTCTNSQKLIVGHSPLSCCPQYKCECDPLKCPSISTPECREDQFMIQVRQEEPCCFSPFCVCESCTKPVPLCHDGEFLTVDLNSTHFCCPQYYCVCEPNLCPMPLLNCAEDMNLVKENVSGQCCPTWHCECNCENLIMPTCEVGEFTAIDHNFQSDCGCIQYLCEKDDVCVFQEVSVLNPGQSMIKYLEEDFCYAIECLEEKDNHTGFHTLNFTLVNCSKKCDVHQVYTPSPSDYGCCGTCKNVSCKFHMENGTSVVYAVGSTWHYNCTTYECVKTDEGAIILNYTMVCPPFNETECKMNEGIVKLYNEGCCKICKREERICQKVIIKSVIRKQDCMSQSPINVASCDGKCPSATIYNINIESHLRFCKCCRENGVRNLSVPLYCSGNGTEIMYTLQEPIDCTCQWN", "sequence_length": 2353, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "9f1c97145fbc82b0d7a1e41079776483332ddd923c7636cc6fa0c8fa8f588774", "sequence_version": 6, "source_url": "https://rest.uniprot.org/uniprotkb/Q3ZCN5.json", "taxon_id": "9606", "uniprot_accession": "Q3ZCN5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/abfb-pf05270.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05270", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/abfb-pf05270.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fn1-vw-otogl-pf25960.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25960", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fn1-vw-otogl-pf25960.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q6ZRI0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00094", "PF01826", "PF05270", "PF08742", "PF23244", "PF25960", "PF25961", "PF25962" ], "protein_name": "Otogelin", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "19b9cdb4edbdd3343b04dcad557228697c81a09548bdc8356383a629ca9118c8", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGVLASALCWLLCVWLPWGEQAAESLRVQRLGERVVDSGRSGARGMRNVKGMRNGPAQTRVSSSSSHQEATLAMGDKATVVGGQQAEAPDSVAMSSWERRLHRAKCAPSYLFSCFNGGECVHPAFCDCRRFNATGPRCQMVYNAGPERDSICRAWGQHHVETFDGLYYYLSGKGSYTLVGRHEPEGQSFSIQVHNDPQCGSSPYTCSRAVSLFFVGEQEIHLAKEVTHGGMRVQLPHVMGSARLQQLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKDDLVTSSGKLTDDVVEFVHSWQEQAPNQPPGPTTSSLPRPPCLQQNPGTMQGVYEQCEALLRPPFDACHAYVSPLPFTASCTSDLCQSMGDVATWCRALAEYARACAQAGRPLQGWRTQLRQCTVHCKEKAFTYNECIACCPASCHPRASCVDSEIACVDGCYCPNGLIFEDGGCVAPAECPCEFHGTLYPPGSVVKEDCNTCTCTSGKWECSTAVCPAECSVTGDIHFTTFDGRRYTFPATCQYILAKSRSSGTFTVTLQNAPCGLNQDGACVQSVSVILHQDPRRQVTLTQAGDVLLFDQYKIIPPYTDDAFEIRRLSSVFLRVRTNVGVRVLYDREGLRLYLQVDQRWVEDTVGLCGTFNGNTQDDFLSPVGVPESTPQLFGNSWKTLSACSPLVSGSPLDPCDVHLQAASYSVQACSVLTGEMFAPCSAFLSPVPYFEQCRRDACRCGQPCLCATLAHYAHLCRRHGLPVDFRARLPACALSCEASKEYSPCVAPCGRTCQDLASPEACGVDGGDDLSRDECVEGCACPPDTYLDTQADLCVPRNQCSCHFQGVDYPPGDSDIPSLGHCHCKDGVMSCDSRAPAAACPAGQVFVNCSDLHTDLELSRERTCEQQLLNLSVSARGPCLSGCACPQGLLRHGDACFLPEECPCTWKGKEYFPGDQVMSPCHTCVCQRGSFQCTLHPCASTCTAYGDRHYRTFDGLPFDFVGACKVHLVKSTSDVSFSVIVENVNCYSSGMICRKFISINVGNSLIVFDDDSGNPSPESFLDDKQEVHTWRVGFFTLVHFPQEHITLLWDQRTTVHVQAGPQWQGQLAGLCGNFDLKTINEMRTPENLELTNPQEFGSSWAAVECPDTLDPRDMCVLNPLREPFAKKECSILLSEVFEICHPVVDVTWFYSNCLTDTCGCSQGGDCECFCASVSAYAHQCCQHGVAVDWRTPRLCPYDCDFFNKVLGKGPYQLSSLAAGGALVGMKAVGDDIVLVRTEDVAPADIVSFLLTAALYKAKAHDPDVVSLEAADRPNFFLHVTANGSLELAKWQGRDTFQQHASFLLHRGTRQAGLVALESLAKPSSFLYVSGAVLALRLYEHTEVFRRGTLFRLLDAKPSGAAYPICEWRYDACASPCFQTCRDPRAASCRDVPRVEGCVPVCPTPQVLDEVTQRCVYLEDCVEPAVWVPTEALGNETLPPSQGLPTPSDEEPQLSQESPRTPTHRPALTPAAPLTTALNPPVTATEEPVVSPGPTQTTLQQPLELTASQLPAGPTESPASKGVTASLLAIPHTPESSSLPVALQTPTPGMVSGAMETTRVTVIFAGSPNITVSSRSPPAPRFPLMTKAVTVRGHGSLPVRTTPPQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAVTKVISRTGVPQPTQAQSASSPSTPLTVAGTAAEQVPVSPLATRSLEIVLSTEKGEAGHSQPMGSPASPQPHPLPSAPPRPAQHTTMATRSPALPPETPAAASLSTATDGLAATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPLQPQATTLPAQTLSPVLPFTPAAMTQAHPPTHIAPPAAGTAPGLLLGATLPTSGVLPVAEGTASMVSVVPRKSTTGKVAILSKQVSLPTSMYGSAEGGPTELTPATSHPLTPLVAEPEGAQAGTALPVPTSYALSRVSARTAPQDSMLVLLPQLAEAHGTSAGPHLAAEPVDEATTEPSGRSAPALSIVEGLAEALATTTEANTSTTCVPIAEQDCVRHICLEGQLIRVNQSQHCPQGAAPPRCGILGLAVRVGGDRCCPLWECACRCSIFPDLSFVTFDGSHVALFKEAIYILSQSPDEMLTVHVLDCKSANLGHLNWPPFCLVMLNMTHLAHQVTIDRFNRKVTVDLQPVWPPVSRYGFRIEDTGHMYMILTPSDIQIQWLHSSGLMIVEASKTSKAQGHGLCGICDGDAANDLTLKDGSVVGGAEDPAPFLDSWQVPSSLTSVGQTRFRPDSCATTDCSPCLRMVSNRTFSACHRFVPPESFCELWIRDTKYVQQPCVALTVYVAMCHKFHVCIEWRRSDYCPFLCSSDSTYQACVTACEPPKTCQDGILGPLDPEHCQVLGEGCVCSEGTILHRRHSALCIPEAKCACTDSMGVPRALGETWNSSLSGCCQHQCQAPDTIVPVDLGCPSPRPESCLRFGEVALLLPTKDPCCLGTVCVCNQTLCEGLAPTCRPGHRLLTHFQEDSCCPSYSCECDPDLCEAELVPSCRQDQILITGRLGDSCCTSYFCACGDCPDSIPECQEGEALTVHRNTTELCCPLYQCVCENFRCPQVQCGLGTALVEVWSPDRCCPYKSCECDCDTIPVPRCHLWEKSQLDEEFMHSVENVCGCAKYECVKAPVCLSRELGVMQPGQTVVELSADGVCHTSRCTTVLDPLTNFYQINTTSVLCDIHCEANQEYEHPRDLAACCGSCRNVSCLFTFPNGTTSLFLPGASWIADCARHHCSSTPLGAVLVRSPISCPPLNETECAKVGGSVVPSLEGCCRTCKEDGRSCKKVTIRMTIRKNECRSSTPVNLVSCDGRCPSASIYNYNINTYARFCKCCREVGLQRRSVQLFCATNATWVPYTVQEPTDCACQWS", "sequence_length": 2925, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "19b9cdb4edbdd3343b04dcad557228697c81a09548bdc8356383a629ca9118c8", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZRI0.json", "taxon_id": "9606", "uniprot_accession": "Q6ZRI0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/ctck-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01185", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/ctck-1.yaml" } ], "pfam_ids": [ "PF00094", "PF01826", "PF08742", "PF25962" ], "protein_name": "Mucin-19", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLILWYLVVALWCFFKDVEALLYRQKSDGKIAASRSGGFSYGSSSSGDLDRKKPLFSLEFGSPGETEDKSRQRQDAGSPKSEDTPAGGFFNSSSSSGDSDRTKPFFSLGLGAPGKAEDKSGDSQDAGGSKSEDTPPGGFFYGSSSSGDSDKKKPLFSFEFGATGEDEDKSRERWDAGNSRSEDSPADSTNTRYGAGFSSSGASLDVGFGWGISDEKGLEVSKADGRETRGSGSAGGETIVFGPDAGSSVGTGSSGLKLGAGKGDAAFGFEVSDSNSFGDTGISSKTVEGNQTSSSGGSVSIDLGDTSFRSENQFVGGGSLNSISNLWDSGQEGFGINEIGGNGMSGSVSAEAGFKGFGSDSSSSGDSSARNGFENSSGISEDSGVILGSSDQHEVELSRTGGNRKRSSDPDEAGNLSPGSDVSDSGGNTWSSDSGSGGGGVTSSSEYSTSGPLNTPEKGSHIPEATPKYSETNAIIGEISTWSKGAYKSFNGRIFFFESSCPYTFCRHCIESGGDFNIEIKRNNDSEIEKITVLIDNNDVSIFGDTILVNGESVQIPYNNKLIHIKKYGEHNVLNSRRGILTLMWDKNNKLSLTLHKQYPTCGLCGNFNSTPGQDINEHIANSKIPGDCPNAVGKSYEVCEDGIQHCNKIIGTYFEKCGKVAALSNDYKMICIDEYCQTRDKTSTCDTYSELSRLCASDGPGTFESWRSDSDVVCGTQRCPEQHIYKECGPSNPATCSNVAPFQDSECVSGCTCPEGYLLDDIGEKGKCVLKAECPCESSGTVYQPGEVREGPCGSQCTCQDAKWSCTEALCPGRCKVEGSSLTTFDGVKYNFPGNCHFLAVHNEDWSISVELRPCPSGQTGTCLNSVTLLLNSSVPVDKYVFNSDGTVTNDKIRNQGYYYSDKIQIFNASSSYLQVETYFHVKLQIQIVPVMQLYVSMPPNQFTDTVGLCGSYNNKAEDDFMSSQNILEKTSQAFANSWEMMSCPKGNPSSCISIEKEKFAERHCGILLDSSGPLASCHPIVNPKPYHEECKKYTCTCENSQDCLCTILGNYVKACAEKETYIVGWRTGLCEHSCPSGLVFKYNVKACNSSCRSLSERDRSCDVEDVPVDGCTCPDAMYQNNEGNCVLKSQCDCYINDEVMQPGKLIHIDDNKCVCRDGILLCQIPIDLTLQNCSGGAEYVDCSDPKAQRRTNRTCSTRNIPVFDENLPCKRGCFCPEGMVRNSKGICVFPNDCPCSFGGREYDEGSVTSVGCNECTCIKGSWSCTQNECQTICHIYGEGHVRTFDGKSYSFDGLCQYSFLEDYCGHENGTFRILTESVPCCEDGLTCSRKIIVAFQDQNIVLQDGKVTAVKSTESKKCELNANAYSIHTVGLYLILKFQNGIIVIWDKNTRLSVILDPNWNGKVCGLCGNNNGDLKDDFTTRYSSVASGALEFGNSWKTSQECSDTVAQTFPCDSNPYCKAWAVRKCEILRDSTFRDCHNKVDPSAYHDACIEEACACDMEGKYLGFCTAVAMYAEACSAVGVCVSWRKPNLCPVYCDYYNAPGECRWHYEPCGTVTAKTCKDQLVGQKFSSLLEGCYAKCPDSAPYLDENTMKCVSLSECSCFYNDVIPAGGVIEDNCGRTCYCIAGQLECSETAPTNSTFAVSTTTATTILSTGAAITLVTGGPSTAASIPAITTSSSETTGTTLGPLTEPFTTGITETSVPIISTSGNAGMTGVVSPTVTGASGMAGTTGGVDAATTGAASENTSERAGTPRVSGETPAVGGGSTPGEAGPGATVSGSTGVSAGSITASPGASATSSESSKSGTTGPSVGGKTGATSSEATSSEGMSGVTGQSLGSTAGSDSEITAKTSFTGSSPPGKLTRPSPGSPGHFSGGTTEWGNVATTGAAGENTSGALGSTEGSVEATTSAGSGNTAGTSGTGDTGPGNTAVSGTPVVSPGATPGAPGSSTPGEADIGNTSFGKSGTPTVSAASTTSSPVSKHTDAASATAVTISGSKPGTPGTPGGATSGGKITSGWSSSGTSTGASNTPGATGSSTGQTDTSGPSAKVTGNYGQSSEIPGTIKSSSDVSGTMGQSDTTSGPSVAVTRTSEQSSGVTVASEPSVGVSGTTGPLAEISGTTRPLVSGLRTTGSSAEGSGTTGPSSRESVTTRPLAEGSGTSGQSVTGSRATGLSATELGTTVSFTGGLGTSRSSARETRTTGPSADGSGTTGPSVVRSGTTRLSVGVTRATESSPGVTGTTTPSAEESRTTGPSVLVTGTTGQSGQGSGTTGKSFIESGPSVVGSGTTGPTSAGLGTTAPSTRRSSTTKPSVGRTGTTGQSGAESGTTEPSARVAGVTGTSAEVSGRIEPSATESSTSRPLGETTGTTIPSMEGSEATGPSVIGSETTRLSVIGSGTTGTSSGGSGATRSSGGGMGTTGQSTARSETTGPLFGLTGTFGQSATVTGTSSNSAGVTTPEKSPGVAMTTGLLVEGSATTQPRILESETTESSAGVIVTSGQSARVTGATGPSAGETGTTEPSTEGSVAAVLFVIGSETTRPLDIGSGTTGTLSGGSSTTRSSDGTTGTTRKSTARSETTGLSGLTGTSGQLAGVTGTSSKSAGVTVTSEKSAGVAVITGSFVERPVTTGPPLLESETTRPSGGVTVTSGQSARVTETVGASAGVTGTTGPSTEGSGATGPSVVGSGTTRPLAGESGTTESSAGVTGTRPSSSRESATTGPSDEGSGTTGLSAGVTVTSGQSVRKTGTTGAPAGVTETTRPSVVKSGTTGPSVIGTRTTGTSSGGSGATRSSGGETETTGQSAVKSGTTESFTRLTRTSGQSAGMTGTSAQSAGVALTSPFVEGLVTTGSSTVGLETTRPSAVGSGKTGPPVVKAQTTGPSAGVTVTSGQSARMTGASGPSVGVTGTTGPASKGLGTIRPSVVGLETTELSAEGSGTTGPPIVGETTVPSAGVTVTSGYSDRVTGATEPLAGVTGTIKPSVAGSVTTGPSVTGVETTAKTTSGGLSTTISSVGGTGTTGQSPERSGTTGPFTGLTGTSAQSAGVTMTSIQSAGVLVTTGLNVDGLGTTGKALIGSGTTGLSAEATGTIGPSTEGLEKTGPSITGSGTTRPLVTESWTAGTSSGGHSTTSPSVRGTETTGQSAAESVTTGPVTGYTETSGPSAGVTVTPRQSPTVTQTTGSSAAVSGTTVQSLTVSGTTRPSSGQTEITGSSVKESGTTESSAVRSGTTGPTAGVTGTNGPSSAGVTGITGSSPGVTGTTGSSPGVTGTTGSSARSGTSIPSVGKTGTTRTSVEESRTTRPSAGITGTNGLSAEVTGTTGPLAGVTGTTGPSAGVTRTTGLSAGETGTTGLSPGVTRTTRSSAGLTGKTGLSAGVTGKTGLSAEVTGTTRLSAGVTGTTGPSPGVTGTTGTPAGVTGTTELSAGVTGKTGLSSEVTETTGLSYGVKRTIGLSAGSTGTSGQSAGVAGTTTLSAEVTGTTRPSAGVTGTTGLSAEVTEITGISAVVTGTTGPSAGVTETTGSSAGVAGTTRLSAGVTGITGLSAGVTGTTGLSTEVTGTTGPSAGATGTTGLSVGVTGITGLSDVVTETTGSSARSGTGIPSVGETRTTSTSVEESRTTRPSAGIMGTNGLPAEVTGTTEPLAGGTGTTGILAGVTGTTGLSAGETGKIGSSAGVTGKTGSSARVTGKTGPSAEVTGKTGLSAGVTGTTGLSPGVTGTSGLSAEVTGTTGPSAEATGLPGVSAGVTGTTGSLAGGTGTIGLSAGVTGTTGSSAGVTGTTGLSAGVTGIAGLSAGVTGITGPSAGVTGTTTVSAGVTGTTGLSAEATEITGLSAGVTGTTGLSAGVTETIRLSAGVTGTIRSSAGVTGITGLSAGVTGTTGPSAGVTGSTGLLAGVTETTGQSAKVTGTTGQSVGVTGTTRSSGGVTGITGLSAGVTGTNGLSAVTGMTGLSAEVTGTTGLSVGVTGIAGLSAGVTGITGPSAGITGTTTISAGVTGTSGLSAEATGITGLSAGVTGKTGLSAGVTETIGLSAEATGTIGSSPGVTGTTGSSTGVTGITGLSAGVTGTTGLSTEVTGTTGPSAGVTRTTGLSAGVTGITGLSAIVTETTGSSARSGTSIPSVGETGTTRTSVEESRTTRPSAGITGTNGLSAEVTGTIGPLAGGTGTTGLSAGVTGTVGSSAVVTGTTGLSAGVTGTTGPSAEETGATGPSAEVTETTGPSAGVTGTGRLSAEVTGTTGPSAEVTGLPGESAEVTGTIGSPAGVTGTTQLSAVVTGITGLSAEVTGTTGLSAGVTGITGLSAEVTRTTGLSAGVTGTIGLSAGVTGTTRPSAGVTGTTGQSAEVTGTTEPSAGLTETTGSSTGVTGATGPLAGVTGTTGISTEVTGTTGPSARVTGTTVLSAGVTGITGLSAIVTETTGSSARSGTSTPSVGETGTTRTSVEESRATRPSAGITGTNGQSAEVTWITGPLAGVTGTTGISAGVTGTTGLSAGVTGTIGSSAVVTGINGLSAGVTGTTGPSAEETGATGPSAEVTGTTGPSAEETGATGPSAEVTGTTGPSGGVTGTNGLSAEVTGTTGPSAEVTGLPGVSAGVTGTIGSPAAVTGTIRPSAVVTGITGLSAEVTGTTGLSAWVTGIAGLSAGVTETIGSSAGVTGTNGLSAEATGTTGPSAGVTGTTGLSAGVTGTAGLSARVTESTGLSAGVTGTTGLSAGVTGTTGPSAGITGTNGLSAEVTGTTGPLAGVTGTIGLSAGVTGIAGLSAGVTESTGLSAGVTGTIRSSAVVTGINGLSAGVTGTTGPSAEETGATGPSAEVTGTTGPSGGVTGTSGISAEVTGTTGPSAEVTGLPGVSAGVTGTIGSPAAVTGTTRPSAVVTGISGLSAEVTGTTGLSAGVTETIGSSAGVTGTNGLSAEATETTGPSAGVTGTTGLSAGVTGTTGPSAGIAGTNGLSAGVTGTTGLSARVTESTGLSAGVTGTIGSSAVVTETTRLSSGVTGTIGPSAEETGATGLSAEVTGTTGSLAEVTGTTGLSAGVTGTIGSSAVVTGTTGLSAGITGTNGLSAEVTGTAGPLAGVTGTTGLSAGVTGTTGLSAGVTETTGQSAGVTESTGLSPGVTGTIGSSAVVTGIKGLSAGVTGTTGPSAEETGATGPSAEVTGTTGPSGGVTGTSVLSVEVTGTTGPSAEVTGLPGVSAGLTGTIGSPAAVRGTTWPSAVVTGISGLSGEVTGTTGLSAGVTGIGGLSAGVTGTIGSSAGVTGTNALSAEATGTTGPSAGVTGTTGLSAGVTGTTGLSAGVTGTIRSSAVVTETTGLSAGVTGTTGPSAGIAGTNGLSAEVTGTTGLSAGMTGTTGLSARVTESTGLSAGVTGTIGSSAVVTETTRLSAGVTGTIGPSAEETGATGLSAEVTRTTGSLAGVTGTTGPSAVVTGKTELSAEVTGTTELSAEVTEKTGPSAEVTGKTGLSAGVMETTGPSAEVTGTTGSSAGVTGTTGPSAGVTGTTGPSAEATGLPGVSAGVTGTIGSPAGVTGTARLSAVVTGISGLSAEVTGTTGLSTGVTGIAGHSAAVTGITRPSAGVTGTTTVSAGVTGTIGLSAEATGITLPSAGVTETTGLSAGVTETIGLSAGVTGTIGSSAGVTEITGLSAGVTGTTGPSAGVTGSTVLSAGVTATTGQSVGVTGTTGPSAGVTGTTGLSAGVTGIAGLSAGVTGITGPSAGVTGTTTVSAGVTGTTGLSAEATEITGLSAGVTGTTGLSAGVTGIAGLSAGVTETIGSSAGVTGTNGLSAEATGKTGPSAGVTGTTGLSAGVTGTTGLSAGVTETIGLSAGVTGTIGSSAGVKGTTGQSAEVTGATGQSVGVTGTTRSSGGVTGITGLSAGLRGTTVSSAKAGTSIPLTGKTGTTRTSVEESTTTGPSAGITGTNGLSAEMTGTNELSAGVTGTIGSSAGVTGTTGLSVEATVTTGLSAGVTGTTVPLAGVTWTPGPSAGVTGIAALSAGVTGKSGLSAGVTGKTGLSAGVTGTTGPSAEATGKTGLSAGVTGITGPFAEVTGTTGLSAGVIGTTGSSAEVTGITGLSAGVTGKTRSSAGVTGTTGLSAKSGTSIPSAGKTGTTKTSVEESRTTRPSAGITATTGVPAATSPGAEGESIASTSVATGAIPRSTIAPGSTTTGTTGVTTGTTLAPRSFNIGTSGGISGKTLKPGSYVSEATTATGTPGAGPSGGTTISSPEVSTISEVSNTGITGVGSETSIETGISNTATTGVAPGTTLAPGSSSTEATTSIGGSASTRGGIATEATGSTRGVRTTGSEAPEGTSGEFSGTTISSGGFHTEATTLTGGRGSIGTESRAESTTSLPQSAKTRGGILTEATSSTGRIRATGSEAPGGTSRKFSGTTISSGGSHTEATTLAGGRDSTESEFRTATIGVVPATTVAPGSSKTEATTFLGVSGTTSVGRATGATTSIAGSDTSQAEHPGGTSGEFPGTTITSGDSHTEATALTGSRGSIGTESTVETTTYIGESGTTRGGLATATTGAFSGKTLEPGNDNTEATGSTGGIRATRTEAPGGTSGEFPGTTFTSGGSHTEATTFTGGKGSTGTESRAATTRAAPGTTLVPGSSNTGATASPGGSATTRGRITTATTGAFSGKTLESENDNTEATSSTRGVRTTRSEAPGGTSGEFPGTRITSGGSYTATTRAAPGTTLAPGSSNTGATASLGGSAMTRGRITTATTGAFSGKTLEPGNNNTEATSSTRGVRTTRSEAPGEATTLTGDRSSTGSESRTATTGVAPGTTVAPGSSKTEATTFLGVSGTTNIGRATGATTSIVGSDTSQAERPGGTTVVSPGASSTSQSSRPGTSVTPDSSASESETVTTKEFSGTTAISRTSHTGTPAASGGQATGSLTATTGVAPGTTVAPGSSNTEATTSVGERETTKAEIITGDTGELSGTTIISENSTTAGITAATGKQAGTSEVAPSTTVAPGSFSTAATTSPGASGTTGVTTTTKTTTSLGGSGTTGAEIKSATTGAPGSRTGTAGVPSATTVSPGSSNSEATTSVGESGKTGAETITEATTSTEGTGTSGTGFKTGTSEVAPATTVAPGSFSTAATTSPGASGMTGVTTTTKTTTSLGGSGTTGAKIKLVGTTTTAPESRTAGVPSGTRVTPGSSNSEATTSVEESRITRAEVITEATTFSGGSGATRAGLPRGTTGEFSGTNFISGSSNTEATTSTEGTGTSGTGFKIAGITSAPGKQAGTSGVSLATTVAPGSFSTATTSSGASGITRAGPTSETTTSLGGSGTTGAEIKSAAVPSGTTVAPGSSNSEATTSVGENGKTRGEIITDTTEGTSGKVLEPGSAHTEATTFPGGSGTTRAGPPGGTTGELSRMTIIPGSSNTEATTSTKGTGTSGTGFKTGTSWVAPGTTVSPGSFSTATISPGASRTTGAAPAAETTTSLEGGGTTGAEIKSGATSGVPGSKTGTAGVPSATTIAPGSSNSEATTSLGESGKTRVETITGTTEGKTLAAGSAHTEATTFSGGSGSTRAGPLGGASGTSGGYVPGRETEPTTSIEETGTSRTIFKTVGITSAPGRQAGTSVVAPSTTVAPGSFSTAATTSPGASGMTGVRTTSKTTTSLGGTGTTRTEIKSGATTGAPGIKTDIMGESSRTTILSGSSNTEATNSIEETGTSGTGFKTAGITAAPGKQAGTSGVAPGTTVAPGSFSTAATTSPGASGVTGTGPTAETTTFLGGSSTTGAEIKSGATTGAPGSKTGTAKVLSGTTVASGSSNSEATTFSGITEAVTVPSKNGSMTTALGSQLSSSQTVIPGSSGTISHTTVAPGSSVTGTTTGASDDQVTGSKTGTTGVALSTTVAPGSSSTEATTSTGVHRTTVVGQKTGATTRGSAKQGTRSTIEATTSFRGTGTTGSGMNTGTTGVVSGNTISPSSFNTEATSGTSERPNPGSEIGTTGIVSGTTVAPGSSNTEATTSLGNGGTTEAGSKIVTTGITTGTTIVPGSFNTKATTSTDVGVATGVGMATGITNIISGRSQPTGSKTGYTVTGSGTTALPGGFRTGNTPGSTGVTSSQEGTTVVSSGITGIPETSISGPSKEASDKTTAPGPPTTVTASTGVKETSETGVQTGSTLVTAGVPTRPQVSQPETTVVATREVETENKTECLASLPPAPVCHGPLGEEKSPGDIWTANCHRGTCTDAKTIDCKPEECPSPPTCKTGEKLVKFQSNDTCCEIGYCEPRTCLFNNTDYEIGASFDDPSNPCVSYSCKDTGFAAVVQDCPKQTWCAEANRIYDSKKCCYTCKNNCRSSLVNVTVIYSGCKKRVQMAKCTGECEKTAKYNYDILLLEHSCLCCREENYELRDIVLDCPDGSTIPYQYKHITTCSCLDICQLYTTFMYS", "sequence_length": 8384, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5b5d5c1a283723d616f21935feb9de8ea2f07917fb29b3335a6996b2b3996d72", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Z5P9.json", "taxon_id": "9606", "uniprot_accession": "Q7Z5P9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8CJ69", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00093", "PF00094", "PF01826", "PF08742" ], "protein_name": "BMP-binding endothelial regulator protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "930a0e605bc4664595e91c458e6f3776a6eeebe03e0a5f16b8ee824c7513dd13", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLWFFSVRALAERPCRRSPGITCCVLLLLNCSGVPMSLASSFLTGSVAKCENEGEVLQIPFITDNPCIMCVCLNKEVTCKREKCPVLSRDCALAIKQRGACCERCKGCTHEGRTYNSSFKWQTPAEPCVLRQCQEGVVTESEVRCVVHCKNPAEHQGACCPTCPGCVFEGVQYREGEEFQPEGNKCITCSCVGGRTQCVREVCPILSCPQHLSHTPSGQCCPKCLGQRKVFDLPFGSCLFRSDVYDNGASFVYDNCTVCTCKDSTMVCKKKCSHPGVCNSDEDACCEDCLLRVPPEDIKVCKFGSKIFRDGEMWSSVNCSICACVKGKTECRKKQCVPVSSCPQGKILNRKGCCPICTEKPGVCTVFGDPHYNTFDGRTFNFQGTCQYVLTKDCSSPASPFQVLVKNDARRTRSFSWTKSVELMLGESTVSLQQHLTVRWNGSRIALPCHTPHFHIDLDGYLLKVTTRAGLEISWDGDSFVEVMAAPHLKGKLCGLCGNYNGHKRDDLIGGDGNFKFDVDDFAESWRVESNEFCNRPQRKPVPELCQGTVKVKLRAHRECQKLKSWEFQTCHSTVDYTTFYRSCVTDMCECPVHKNCYCESFLAYTRACQREGIKVHWEPQQSCAATQCKHGAVYDTCGPGCVKTCDNWNEIGPCNKPCIAGCHCPANLVLHKGRCIKPVLCPQR", "sequence_length": 685, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "930a0e605bc4664595e91c458e6f3776a6eeebe03e0a5f16b8ee824c7513dd13", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CJ69.json", "taxon_id": "10090", "uniprot_accession": "Q8CJ69", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c8-pf08742.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF08742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c8-pf08742.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8N8U9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00093", "PF00094", "PF01826", "PF08742" ], "protein_name": "BMP-binding endothelial regulator protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a1c65c47cc2e378305e3d57cca578287af8ec04680ec8c4033a3d95ad1a3ba25", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLWFSGVGALAERYCRRSPGITCCVLLLLNCSGVPMSLASSFLTGSVAKCENEGEVLQIPFITDNPCIMCVCLNKEVTCKREKCPVLSRDCALAIKQRGACCEQCKGCTYEGNTYNSSFKWQSPAEPCVLRQCQEGVVTESGVRCVVHCKNPLEHLGMCCPTCPGCVFEGVQYQEGEEFQPEGSKCTKCSCTGGRTQCVREVCPILSCPQHLSHIPPGQCCPKCLGQRKVFDLPFGSCLFRSDVYDNGSSFLYDNCTACTCRDSTVVCKRKCSHPGGCDQGQEGCCEECLLRVPPEDIKVCKFGNKIFQDGEMWSSINCTICACVKGRTECRNKQCIPISSCPQGKILNRKGCCPICTEKPGVCTVFGDPHYNTFDGRTFNFQGTCQYVLTKDCSSPASPFQVLVKNDARRTRSFSWTKSVELVLGESRVSLQQHLTVRWNGSRIALPCRAPHFHIDLDGYLLKVTTKAGLEISWDGDSFVEVMAAPHLKGKLCGLCGNYNGHKRDDLIGGDGNFKFDVDDFAESWRVESNEFCNRPQRKPVPELCQGTVKVKLRAHRECQKLKSWEFQTCHSTVDYATFYRSCVTDMCECPVHKNCYCESFLAYTRACQREGIKVHWEPQQNCAATQCKHGAVYDTCGPGCIKTCDNWNEIGPCNKPCVAGCHCPANLVLHKGRCIKPVLCPQR", "sequence_length": 685, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a1c65c47cc2e378305e3d57cca578287af8ec04680ec8c4033a3d95ad1a3ba25", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N8U9.json", "taxon_id": "9606", "uniprot_accession": "Q8N8U9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c8-pf08742.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c8-pf08742.yaml" } ], "pfam_ids": [ "PF00094", "PF01826", "PF08742", "PF13330", "PF25962" ], "protein_name": "Mucin-5B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGAPSACRTLVLALAAMLVVPQAETQGPVEPSWENAGHTMDGGAPTSSPTRRVSFVPPVTVFPSLSPLNPAHNGRVCSTWGDFHYKTFDGDVFRFPGLCNYVFSEHCRAAYEDFNVQLRRGLVGSRPVVTRVVIKAQGLVLEASNGSVLINGQREELPYSRTGLLVEQSGDYIKVSIRLVLTFLWNGEDSALLELDPKYANQTCGLCGDFNGLPAFNEFYAHNARLTPLQFGNLQKLDGPTEQCPDPLPLPAGNCTDEEGICHRTLLGPAFAECHALVDSTAYLAACAQDLCRCPTCPCATFVEYSRQCAHAGGQPRNWRCPELCPRTCPLNMQHQECGSPCTDTCSNPQRAQLCEDHCVDGCFCPPGTVLDDITHSGCLPLGQCPCTHGGRTYSPGTSFNTTCSSCTCSGGLWQCQDLPCPGTCSVQGGAHISTYDEKLYDLHGDCSYVLSKKCADSSFTVLAELRKCGLTDNENCLKAVTLSLDGGDTAIRVQADGGVFLNSIYTQLPLSAANITLFTPSSFFIVVQTGLGLQLLVQLVPLMQVFVRLDPAHQGQMCGLCGNFNQNQADDFTALSGVVEATGAAFANTWKAQAACANARNSFEDPCSLSVENENYARHWCSRLTDPNSAFSRCHSIINPKPFHSNCMFDTCNCERSEDCLCAALSSYVHACAAKGVQLSDWRDGVCTKYMQNCPKSQRYAYVVDACQPTCRGLSEADVTCSVSFVPVDGCTCPAGTFLNDAGACVPAQECPCYAHGTVLAPGEVVHDEGAVCSCTGGKLSCLGASLQKSTGCAAPMVYLDCSNSSAGTPGAECLRSCHTLDVGCFSTHCVSGCVCPPGLVSDGSGGCIAEEDCPCVHNEATYKPGETIRVDCNTCTCRNRRWECSHRLCLGTCVAYGDGHFITFDGDRYSFEGSCEYILAQDYCGDNTTHGTFRIVTENIPCGTTGTTCSKAIKLFVESYELILQEGTFKAVARGPGGDPPYKIRYMGIFLVIETHGMAVSWDRKTSVFIRLHQDYKGRVCGLCGNFDDNAINDFATRSRSVVGDALEFGNSWKLSPSCPDALAPKDPCTANPFRKSWAQKQCSILHGPTFAACRSQVDSTKYYEACVNDACACDSGGDCECFCTAVAAYAQACHDAGLCVSWRTPDTCPLFCDFYNPHGGCEWHYQPCGAPCLKTCRNPSGHCLVDLPGLEGCYPKCPPSQPFFNEDQMKCVAQCGCYDKDGNYYDVGARVPTAENCQSCNCTPSGIQCAHSLEACTCTYEDRTYSYQDVIYNTTDGLGACLIAICGSNGTIIRKAVACPGTPATTPFTFTTAWVPHSTTSPALPVSTVCVREVCRWSSWYNGHRPEPGLGGGDFETFENLRQRGYQVCPVLADIECRAAQLPDMPLEELGQQVDCDRMRGLMCANSQQSPPLCHDYELRVLCCEYVPCGPSPAPGTSPQPSLSASTEPAVPTPTQTTATEKTTLWVTPSIRSTAALTSQTGSSSGPVTVTPSAPGTTTCQPRCQWTEWFDEDYPKSEQLGGDVESYDKIRAAGGHLCQQPKDIECQAESFPNWTLAQVGQKVHCDVHFGLVCRNWEQEGVFKMCYNYRIRVLCCSDDHCRGRATTPPPTTELETATTTTTQALFSTPQPTSSPGLTRAPPASTTAVPTLSEGLTSPRYTSTLGTATTGGPTTPAGSTEPTVPGVATSTLPTRSALPGTTGSLGTWRPSQPPTLAPTTMATSRARPTGTASTASKEPLTTSLAPTLTSELSTSQAETSTPRTETTMSPLTNTTTSQGTTRCQPKCEWTEWFDVDFPTSGVAGGDMETFENIRAAGGKMCWAPKSIECRAENYPEVSIDQVGQVLTCSLETGLTCKNEDQTGRFNMCFNYNVRVLCCDDYSHCPSTPATSSTATPSSTPGTTWILTKPTTTATTTASTGSTATPTSTLRTAPPPKVLTTTATTPTVTSSKATPSSSPGTATALPALRSTATTPTATSVTPIPSSSLGTTWTRLSQTTTPTATMSTATPSSTPETAHTSTVLTATATTTGATGSVATPSSTPGTAHTTKVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTRGSTVTPSSIPGTTHTATVLTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSNTVTPSSALGTTHTPPVPNTMATTHGRSLPPSSPHTVRTAWTSATSGILGTTHITEPSTVTSHTLAATTGTTQHSTPALSSPHPSSRTTESPPSPGTTTPGHTTATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTMGCEPQCAWSEWLDYSYPMPGPSGGDFDTYSNIRAAGGAVCEQPLGLECRAQAQPGVPLRELGQVVECSLDFGLVCRNREQVGKFKMCFNYEIRVFCCNYGHCPSTPATSSTAMPSSTPGTTWILTELTTTATTTESTGSTATPSSTPGTTWILTEPSTTATVTVPTGSTATASSTQATAGTPHVSTTATTPTVTSSKATPFSSPGTATALPALRSTATTPTATSFTAIPSSSLGTTWTRLSQTTTPTATMSTATPSSTPETVHTSTVLTTTATTTGATGSVATPSSTPGTAHTTKVLTTTTTGFTATPSSSPGTARTLPVWISTTTTPTTRGSTVTPSSIPGTTHTPTVLTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHTPPVPNTTATTHGRSLSPSSPHTVRTAWTSATSGTLGTTHITEPSTGTSHTPAATTGTTQHSTPALSSPHPSSRTTESPPSPGTTTPGHTRATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTMGCEPQCAWSEWLDYSYPMPGPSGGDFDTYSNIRAAGGAVCEQPLGLECRAQAQPGVPLRELGQVVECSLDFGLVCRNREQVGKFKMCFNYEIRVFCCNYGHCPSTPATSSTATPSSTPGTTWILTEQTTAATTTATTGSTAIPSSTPGTAPPPKVLTSTATTPTATSSKATSSSSPRTATTLPVLTSTATKSTATSFTPIPSFTLGTTGTLPEQTTTPMATMSTIHPSSTPETTHTSTVLTTKATTTRATSSMSTPSSTPGTTWILTELTTAATTTAATGPTATPSSTPGTTWILTEPSTTATVTVPTGSTATASSTRATAGTLKVLTSTATTPTVISSRATPSSSPGTATALPALRSTATTPTATSVTAIPSSSLGTAWTRLSQTTTPTATMSTATPSSTPETVHTSTVLTTTTTTTRATGSVATPSSTPGTAHTTKVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTRGSTVTPSSIPGTTHTATVLTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHTPPVPNTTATTHGRSLPPSSPHTVRTAWTSATSGILGTTHITEPSTVTSHTPAATTSTTQHSTPALSSPHPSSRTTESPPSPGTTTPGHTRGTSRTTATATPSKTRTSTLLPSSPTSAPITTVVTTGCEPQCAWSEWLDYSYPMPGPSGGDFDTYSNIRAAGGAVCEQPLGLECRAQAQPGVPLRELGQVVECSLDFGLVCRNREQVGKFKMCFNYEIRVFCCNYGHCPSTPATSSTATPSSTPGTTWILTKLTTTATTTESTGSTATPSSTPGTTWILTEPSTTATVTVPTGSTATASSTQATAGTPHVSTTATTPTVTSSKATPFSSPGTATALPALRSTATTPTATSFTAIPSSSLGTTWTRLSQTTTPTATMSTATPSSTPETAHTSTVLTTTATTTRATGSVATPSSTPGTAHTTKVPTTTTTGFTVTPSSSPGTARTPPVWISTTTTPTTSGSTVTPSSVPGTTHTPTVLTTTTTTVATGSMATPSSSTQTSGTPPSLITTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHTPPVPNTTATTHGRSLSPSSPHTVRTAWTSATSGTLGTTHITEPSTGTSHTPAATTGTTQHSTPALSSPHPSSRTTESPPSPGTTTPGHTTATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTTGCEPQCAWSEWLDYSYPMPGPSGGDFDTYSNIRAAGGAVCEQPLGLECRAQAQPGVPLGELGQVVECSLDFGLVCRNREQVGKFKMCFNYEIRVFCCNYGHCPSTPATSSTAMPSSTPGTTWILTELTTTATTTASTGSTATPSSTPGTAPPPKVLTSPATTPTATSSKATSSSSPRTATTLPVLTSTATKSTATSVTPIPSSTLGTTGTLPEQTTTPVATMSTIHPSSTPETTHTSTVLTTKATTTRATSSTSTPSSTPGTTWILTELTTAATTTAATGPTATPSSTPGTTWILTELTTTATTTASTGSTATPSSTPGTTWILTEPSTTATVTVPTGSTATASSTQATAGTPHVSTTATTPTVTSSKATPSSSPGTATALPALRSTATTPTATSFTAIPSSSLGTTWTRLSQTTTPTATMSTATPSSTPETVHTSTVLTATATTTGATGSVATPSSTPGTAHTTKVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTTTPTTSGSTVTPSSIPGTTHTARVLTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGTTPITPVLTSTATTPAATSSKATSSSSPRTATTLPVLTSTATKSTATSFTPIPSSTLWTTWTVPAQTTTPMSTMSTIHTSSTPETTHTSTVLTTTATMTRATNSTATPSSTLGTTRILTELTTTATTTAATGSTATLSSTPGTTWILTEPSTIATVMVPTGSTATASSTLGTAHTPKVVTTMATMPTATASTVPSSSTVGTTRTPAVLPSSLPTFSVSTVSSSVLTTLRPTGFPSSHFSTPCFCRAFGQFFSPGEVIYNKTDRAGCHFYAVCNQHCDIDRFQGACPTSPPPVSSAPLSSPSPAPGCDNAIPLRQVNETWTLENCTVARCVGDNRVVLLDPKPVANVTCVNKHLPIKVSDPSQPCDFHYECECICSMWGGSHYSTFDGTSYTFRGNCTYVLMREIHARFGNLSLYLDNHYCTASATAAAARCPRALSIHYKSMDIVLTVTMVHGKEEGLILFDQIPVSSGFSKNGVLVSVLGTTTMRVDIPALGVSVTFNGQVFQARLPYSLFHNNTEGQCGTCTNNQRDDCLQRDGTTAASCKDMAKTWLVPDSRKDGCWAPTGTPPTASPAAPVSSTPTPTPCPPQPLCDLMLSQVFAECHNLVPPGPFFNACISDHCRGRLEVPCQSLEAYAELCRARGVCSDWRGATGGLCDLTCPPTKVYKPCGPIQPATCNSRNQSPQLEGMAEGCFCPEDQILFNAHMGICVQACPCVGPDGFPKFPGERWVSNCQSCVCDEGSVSVQCKPLPCDAQGQPPPCNRPGFVTVTRPRAENPCCPETVCVCNTTTCPQSLPVCPPGQESICTQEEGDCCPTFRCRPQLCSYNGTFYGVGATFPGALPCHMCTCLSGDTQDPTVQCQEDACNNTTCPQGFEYKRVAGQCCGECVQTACLTPDGQPVQLNETWVNSHVDNCTVYLCEAEGGVHLLTPQPASCPDVSSCRGSLRKTGCCYSCEEDSCQVRINTTILWHQGCETEVNITFCEGSCPGASKYSAEAQAMQHQCTCCQERRVHEETVPLHCPNGSAILHTYTHVDECGCTPFCVPAPMAPPHTRGFPAQEATAV", "sequence_length": 5762, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "48d46898cd45dadc9d2c350038a2f3f9b3456e6596e04a0c9e36233c4741fd31", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HC84.json", "taxon_id": "9606", "uniprot_accession": "Q9HC84", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/mam-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00740", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/mam-1.yaml" } ], "pfam_ids": [ "PF00094", "PF00629", "PF01826", "PF08742", "PF12714" ], "protein_name": "Zonadhesin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVPPVWTLLLLVGAALFRKEKPPDQKLVVRSSRDNYVLTQCDFEDDAKPLCDWSQVSADDEDWVRASGPSPTGSTGAPGGYPNGEGSYLHMESNSFHRGGVARLLSPDLWEQGPLCVHFAHHMFGLSWGAQLRLLLLSGEEGRRPDVLWKHWNTQRPSWMLTTVTVPAGFTLPTRLMFEGTRGSTAYLDIALDALSIRRGSCNRVCMMQTCSFDIPNDLCDWTWIPTASGAKWTQKKGSSGKPGVGPDGDFSSPGSGCYMLLDPKNARPGQKAVLLSPVSLSSGCLSFSFHYILRGQSPGAALHIYASVLGSIRKHTLFSGQPGPNWQAVSVNYTAVGRIQFAVVGVFGKTPEPAVAVDATSIAPCGEGFPQCDFEDNAHPFCDWVQTSGDGGHWALGHKNGPVHGMGPAGGFPNAGGHYIYLEADEFSQAGQSVRLVSRPFCAPGDICVEFAYHMYGLGEGTMLELLLGSPAGSPPIPLWKRVGSQRPYWQNTSVTVPSGHQQPMQLIFKGIQGSNTASVVAMGFILINPGTCPVKVLPELPPVSPVSSTGPSETTGLTENPTISTKKPTVSIEKPSVTTEKPTVPKEKPTIPTEKPTISTEKPTIPSEKPNMPSEKPTIPSEKPTILTEKPTIPSEKPTIPSEKPTISTEKPTVPTEEPTTPTEETTTSMEEPVIPTEKPSIPTEKPSIPTEKPTISMEETIISTEKPTISPEKPTIPTEKPTIPTEKSTISPEKPTTPTEKPTIPTEKPTISPEKPTTPTEKPTISPEKLTIPTEKPTIPTEKPTIPTEKPTISTEEPTTPTEETTISTEKPSIPMEKPTLPTEETTTSVEETTISTEKLTIPMEKPTISTEKPTIPTEKPTISPEKLTIPTEKLTIPTEKPTIPIEETTISTEKLTIPTEKPTISPEKPTISTEKPTIPTEKPTIPTEETTISTEKLTIPTEKPTISPEKLTIPTEKPTISTEKPTIPTEKLTIPTEKPTIPTEKPTIPTEKLTALRPPHPSPTATGLAALVMSPHAPSTPMTSVILGTTTTSRSSTERCPPNARYESCACPASCKSPRPSCGPLCREGCVCNPGFLFSDNHCIQASSCNCFYNNDYYEPGAEWFSPNCTEHCRCWPGSRVECQISQCGTHTVCQLKNGQYGCHPYAGTATCLVYGDPHYVTFDGRHFGFMGKCTYILAQPCGNSTDPFFRVTAKNEEQGQEGVSCLSKVYVTLPESTVTLLKGRRTLVGGQQVTLPAIPSKGVFLGASGRFVELQTEFGLRVRWDGDQQLYVTVSSTYSGKLCGLCGNYDGNSDNDHLKLDGSPAGDKEELGNSWQTDQDEDQECQKYQVVNSPSCDSSLQSSMSGPGFCGRLVDTHGPFETCLLHVKAASFFDSCMLDMCGFQGLQHLLCTHMSTMTTTCQDAGHAVKPWREPHFCPMACPPNSKYSLCAKPCPDTCHSGFSGMFCSDRCVEACECNPGFVLSGLECIPRSQCGCLHPAGSYFKVGERWYKPGCKELCVCESNNRIRCQPWRCRAQEFCGQQDGIYGCHAQGAATCTASGDPHYLTFDGALHHFMGTCTYVLTRPCWSRSQDSYFVVSATNENRGGILEVSYIKAVHVTVFDLSISLLRGCKVMLNGHRVALPVWLAQGRVTIRLSSNLVLLYTNFGLQVRYDGSHLVEVTVPSSYGGQLCGLCGNYNNNSLDDNLRPDRKLAGDSMQLGAAWKLPESSEPGCFLVGGKPSSCQENSMADAWNKNCAILINPQGPFSQCHQVVPPQSSFASCVHGQCGTKGDTTALCRSLQAYASLCAQAGQAPAWRNRTFCPMRCPPGSSYSPCSSPCPDTCSSINNPRDCPKALPCAESCECQKGHILSGTSCVPLGQCGCTDPAGSYHPVGERWYTENTCTRLCTCSVHNNITCFQSTCKPNQICWALDGLLHCRASGVGVCQLPGESHYVSFDGSNHSIPDACTLVLVKVCHPAMALPFFKISAKHEKEEGGTEAFRLHEVYIDIYDAQVTLQKGHRVLINSKQVTLPAISQIPGVSVKSSSIYSIVNIKIGVQVKFDGNHLLEIEIPTTYYGKVCGMCGNFNDEEEDELMMPSDEVANSDSEFVNSWKDKDIDPSCQSLLVDEQQIPAEQQENPSGNCRAADLRRAREKCEAALRAPVWAQCASRIDLTPFLVDCANTLCEFGGLYQALCQALQAFGATCQSQGLKPPLWRNSSFCPLECPAYSSYTNCLPSCSPSCWDLDGRCEGAKVPSACAEGCICQPGYVLSEDKCVPRSQCGCKDAHGGSIPLGKSWVSSGCTEKCVCTGGAIQCGDFRCPSGSHCQLTSDNSNSNCVSDKSEQCSVYGDPRYLTFDGFSYRLQGRMTYVLIKTVDVLPEGVEPLLVEGRNKMDPPRSSIFLQEVITTVYGYKVQLQAGLELVVNNQKMAVPYRPNEHLRVTLWGQRLYLVTDFELVVSFGGRKNAVISLPSMYEGLVSGLCGNYDKNRKNDMMLPSGALTQNLNTFGNSWEVKTEDALLRFPRAIPAEEEGQGAELGLRTGLQVSECSPEQLASNSTQACRVLADPQGPFAACHQTVAPEPFQEHCVLDLCSAQDPREQEELRCQVLSGHGVSSRYHISELYDTLPSILCQPGRPRGLRGPLRGRLRQHPRLCLQWHPEPPLADCGCTSNGIYYQLGSSFLTEDCSQRCTCASSRILLCEPFSCRAGEVCTLGNHTQGCFPESPCLQNPCQNDGQCREQGATFTCECEVGYGGGLCMEPRDAPPPRKPASNLVGVLLGLLVPVVVVLLAVTRECIYRTRRKREKTQEGDRLARLVDTDTVLDCAC", "sequence_length": 2812, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c8bdb54bc9986257d4d9107eef51f472a8db77f93000ba449808efa966f73553", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y493.json", "taxon_id": "9606", "uniprot_accession": "Q9Y493", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/iggfc-binding-pf17517.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17517", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/iggfc-binding-pf17517.yaml" } ], "pfam_ids": [ "PF00094", "PF01826", "PF08742", "PF12714", "PF17517" ], "protein_name": "IgGFc-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGALWSWWILWAGATLLWGLTQEASVDLKNTGREEFLTAFLQNYQLAYSKAYPRLLISSLSESPASVSILSQADNTSKKVTVRPGESVMVNISAKAEMIGSKIFQHAVVIHSDYAISVQALNAKPDTAELTLLRPIQALGTEYFVLTPPGTSARNVKEFAVVAGAAGASVSVTLKGSVTFNGKFYPAGDVLRVTLQPYNVAQLQSSVDLSGSKVTASSPVAVLSGHSCAQKHTTCNHVVEQLLPTSAWGTHYVVPTLASQSRYDLAFVVASQATKLTYNHGGITGSRGLQAGDVVEFEVRPSWPLYLSANVGIQVLLFGTGAIRNEVTYDPYLVLIPDVAAYCPAYVVKSVPGCEGVALVVAQTKAISGLTIDGHAVGAKLTWEAVPGSEFSYAEVELGTADMIHTAEATTNLGLLTFGLAKAIGYATAADCGRTVLSPVEPSCEGMQCAAGQRCQVVGGKAGCVAESTAVCRAQGDPHYTTFDGRRYDMMGTCSYTMVELCSEDDTLPAFSVEAKNEHRGSRRVSYVGLVTVRAYSHSVSLTRGEVGFVLVDNQRSRLPVSLSEGRLRVYQSGPRAVVELVFGLVVTYDWDCQLALSLPARFQDQVCGLCGNYNGDPADDFLTPDGALAPDAVEFASSWKLDDGDYLCEDGCQNNCPACTPGQAQHYEGDRLCGMLTKLDGPFAVCHDTLDPRPFLEQCVYDLCVVGGERLSLCRGLSAYAQACLELGISVGDWRSPANCPLSCPANSRYELCGPACPTSCNGAAAPSNCSGRPCVEGCVCLPGFVASGGACVPASSCGCTFQGLQLAPGQEVWADELCQRRCTCNGATHQVTCRDKQSCPAGERCSVQNGLLGCYPDRFGTCQGSGDPHYVSFDGRRFDFMGTCTYLLVGSCGQNAALPAFRVLVENEHRGSQTVSYTRAVRVEARGVKVAVRREYPGQVLVDDVLQYLPFQAADGQVQVFRQGRDAVVRTDFGLTVTYDWNARVTAKVPSSYAEALCGLCGNFNGDPADDLALRGGGQAANALAFGNSWQEETRPGCGATEPGDCPKLDSLVAQQLQSKNECGILADPKGPFRECHSKLDPQGAVRDCVYDRCLLPGQSGPLCDALATYAAACQAAGATVHPWRSEELCPLSCPPHSHYEACSYGCPLSCGDLPVPGGCGSECHEGCVCDEGFALSGESCLPLASCGCVHQGTYHPPGQTFYPGPGCDSLCHCQEGGLVSCESSSCGPHEACQPSGGSLGCVAVGSSTCQASGDPHYTTFDGRRFDFMGTCVYVLAQTCGTRPGLHRFAVLQENVAWGNGRVSVTRVITVQVANFTLRLEQRQWKVTVNGVDMKLPVVLANGQIRASQHGSDVVIETDFGLRVAYDLVYYVRVTVPGNYYQQMCGLCGNYNGDPKDDFQKPNGSQAGNANEFGNSWEEVVPDSPCLPPTPCPPGSEDCIPSHKCPPELEKKYQKEEFCGLLSSPTGPLSSCHKLVDPQGPLKDCIFDLCLGGGNLSILCSNIHAYVSACQAAGGHVEPWRTETFCPMECPPNSHYELCADTCSLGCSALSAPPQCQDGCAEGCQCDSGFLYNGQACVPIQQCGCYHNGVYYEPEQTVLIDNCRQQCTCHAGKGMVCQEHSCKPGQVCQPSGGILSCVTKDPCHGVTCRPQETCKEQGGQGVCLPNYEATCWLWGDPHYHSFDGRKFDFQGTCNYVLATTGCPGVSTQGLTPFTVTTKNQNRGNPAVSYVRVVTVAALGTNISIHKDEIGKVRVNGVLTALPVSVADGRISVTQGASKALLVADFGLQVSYDWNWRVDVTLPSSYHGAVCGLCGNMDRNPNNDQVFPNGTLAPSIPIWGGSWRAPGWDPLCWDECRGSCPTCPEDRLEQYEGPGFCGPLAPGTGGPFTTCHAHVPPESFFKGCVLDVCMGGGDRDILCKALASYVAACQAAGVVIEDWRAQVGCEITCPENSHYEVCGSPCPASCPSPAPLTTPAVCEGPCVEGCQCDAGFVLSADRCVPLNNGCGCWANGTYHEAGSEFWADGTCSQWCRCGPGGGSLVCTPASCGLGEVCGLLPSGQHGCQPVSTAECQAWGDPHYVTLDGHRFNFQGTCEYLLSAPCHGPPLGAENFTVTVANEHRGSQAVSYTRSVTLQIYNHSLTLSARWPRKLQVDGVFVTLPFQLDSLLHAHLSGADVVVTTTSGLSLAFDGDSFVRLRVPAAYAGSLCGLCGNYNQDPADDLKAVGGKPAGWQVGGAQGCGECVSKPCPSPCTPEQQESFGGPDACGVISATDGPLAPCHGLVPPAQYFQGCLLDACQVQGHPGGLCPAVATYVAACQAAGAQLREWRRPDFCPFQCPAHSHYELCGDSCPGSCPSLSAPEGCESACREGCVCDAGFVLSGDTCVPVGQCGCLHDDRYYPLGQTFYPGPGCDSLCRCREGGEVSCEPSSCGPHETCRPSGGSLGCVAVGSTTCQASGDPHYTTFDGRRFDFMGTCVYVLAQTCGTRPGLHRFAVLQENVAWGNGRVSVTRVITVQVANFTLRLEQRQWKVTVNGVDMKLPVVLANGQIRASQHGSDVVIETDFGLRVAYDLVYYVRVTVPGNYYQLMCGLCGNYNGDPKDDFQKPNGSQAGNANEFGNSWEEVVPDSPCLPPPTCPPGSEGCIPSEECPPELEKKYQKEEFCGLLSSPTGPLSSCHKLVDPQGPLKDCIFDLCLGGGNLSILCSNIHAYVSACQAAGGQVEPWRNETFCPMECPQNSHYELCADTCSLGCSALSAPLQCPDGCAEGCQCDSGFLYNGQACVPIQQCGCYHNGAYYEPEQTVLIDNCRQQCTCHVGKVVVCQEHSCKPGQVCQPSGGILSCVNKDPCHGVTCRPQETCKEQGGQGVCLPNYEATCWLWGDPHYHSFDGRKFDFQGTCNYVLATTGCPGVSTQGLTPFTVTTKNQNRGNPAVSYVRVVTVAALGTNISIHKDEIGKVRVNGVLTALPVSVADGRISVTQGASKALLVADFGLQVSYDWNWRVDVTLPSSYHGAVCGLCGNMDRNPNNDQVFPNGTLAPSIPIWGGSWRAPGWDPLCWDECRGSCPTCPEDRLEQYEGPGFCGPLAPGTGGPFTTCHAHVPPESFFKGCVLDVCMGGGDRDILCKALASYVAACQAAGVVIEDWRAQVGCEITCPENSHYEVCGPPCPASCPSPAPLTTPAVCEGPCVEGCQCDAGFVLSADRCVPLNNGCGCWANGTYHEAGSEFWADGTCSQWCRCGPGGGSLVCTPASCGLGEVCGLLPSGQHGCQPVSTAECQAWGDPHYVTLDGHRFDFQGTCEYLLSAPCHGPPLGAENFTVTVANEHRGSQAVSYTRSVTLQIYNHSLTLSARWPRKLQVDGVFVTLPFQLDSLLHAHLSGADVVVTTTSGLSLAFDGDSFVRLRVPAAYAGSLCGLCGNYNQDPADDLKAVGGKPAGWQVGGAQGCGECVSKPCPSPCTPEQQESFGGPDACGVISATDGPLAPCHGLVPPAQYFQGCLLDACQVQGHPGGLCPAVATYVAACQAAGAQLREWRRPDFCPFQCPAHSHYELCGDSCPGSCPSLSAPEGCESACREGCVCDAGFVLSGDTCVPVGQCGCLHDDRYYPLGQTFYPGPGCDSLCRCREGGEVSCEPSSCGPHETCRPSGGSLGCVAVGSTTCQASGDPHYTTFDGHRFDFMGTCVYVLAQTCGTRPGLHRFAVLQENVAWGNGRVSVTRVITVQVANFTLRLEQRQWKVTVNGVDMKLPVVLANGQIRASQHGSDVVIETDFGLRVAYDLVYYVRVTVPGNYYQLMCGLCGNYNGDPKDDFQKPNGSQAGNANEFGNSWEEVVPDSPCLPPPTCPPGSAGCIPSDKCPPELEKKYQKEEFCGLLSSPTGPLSSCHKLVDPQGPLKDCIFDLCLGGGNLSILCSNIHAYVSACQAAGGHVEPWRNETFCPMECPQNSHYELCADTCSLGCSALSAPLQCPDGCAEGCQCDSGFLYNGQACVPIQQCGCYHNGVYYEPEQTVLIDNCRQQCTCHVGKVVVCQEHSCKPGQVCQPSGGILSCVTKDPCHGVTCRPQETCKEQGGQGVCLPNYEATCWLWGDPHYHSFDGRKFDFQGTCNYVLATTGCPGVSTQGLTPFTVTTKNQNRGNPAVSYVRVVTVAALGTNISIHKDEIGKVRVNGVLTALPVSVADGRISVAQGASKALLVADFGLQVSYDWNWRVDVTLPSSYHGAVCGLCGNMDRNPNNDQVFPNGTLAPSIPIWGGSWRAPGWDPLCWDECRGSCPTCPEDRLEQYEGPGFCGPLSSGTGGPFTTCHAHVPPESFFKGCVLDVCMGGGDRDILCKALASYVAACQAAGVVIEDWRAQVGCEITCPENSHYEVCGPPCPASCPSPAPLTTPAVCEGPCVEGCQCDAGFVLSADRCVPLNNGCGCWANGTYHEAGSEFWADGTCSQWCRCGPGGGSLVCTPASCGLGEVCGLLPSGQHGCQPVSTAECQAWGDPHYVTLDGHRFDFQGTCEYLLSAPCHGPPLGAENFTVTVANEHRGSQAVSYTRSVTLQIYNHSLTLSARWPRKLQVDGVFVALPFQLDSLLHAHLSGADVVVTTTSGLSLAFDGDSFVRLRVPAAYAASLCGLCGNYNQDPADDLKAVGGKPAGWQVGGAQGCGECVSKPCPSPCTPEQQESFGGPDACGVISATDGPLAPCHGLVPPAQYFQGCLLDACQVQGHPGGLCPAVATYVAACQAAGAQLGEWRRPDFCPLQCPAHSHYELCGDSCPVSCPSLSAPEGCESACREGCVCDAGFVLSGDTCVPVGQCGCLHDGRYYPLGEVFYPGPECERRCECGPGGHVTCQEGAACGPHEECRLEDGVQACHATGCGRCLANGGIHYITLDGRVYDLHGSCSYVLAQVCHPKPGDEDFSIVLEKNAAGDLQRLLVTVAGQVVSLAQGQQVTVDGEAVALPVAVGRVRVTAEGRNMVLQTTKGLRLLFDGDAHLLMSIPSPFRGRLCGLCGNFNGNWSDDFVLPNGSAASSVETFGAAWRAPGSSKGCGEGCGPQGCPVCLAEETAPYESNEACGQLRNPQGPFATCQAVLSPSEYFRQCVYDLCAQKGDKAFLCRSLAAYTAACQAAGVAVKPWRTDSFCPLHCPAHSHYSICTRTCQGSCAALSGLTGCTTRCFEGCECDDRFLLSQGVCIPVQDCGCTHNGRYLPVNSSLLTSDCSERCSCSSSSGLTCQAAGCPPGRVCEVKAEARNCWATRGLCVLSVGANLTTFDGARGATTSPGVYELSSRCPGLQNTIPWYRVVAEVQICHGKTEAVGQVHIFFQDGMVTLTPNKGVWVNGLRVDLPAEKLASVSVSRTPDGSLLVRQKAGVQVWLGANGKVAVIVSNDHAGKLCGACGNFDGDQTNDWHDSQEKPAMEKWRAQDFSPCYG", "sequence_length": 5405, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1cbc8fc897468423b30af46e378eba257bb3946eb91ba833445f5378b9c57e07", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y6R7.json", "taxon_id": "9606", "uniprot_accession": "Q9Y6R7", "uniprot_release": "2026_03" } ], "pfam_id": "PF08742", "short_name": "C8", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf003340.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF003340", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf003340.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf003343.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF003343", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf003343.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/rna-ligase-partner-protein-tigr03875.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR03875", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/rna-ligase-partner-protein-tigr03875.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-the-vapc-like-nuclease-family-of-the-pin--cd18691.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd18691", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-the-vapc-like-nuclease-family-of-the-pin--cd18691.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pin-5-pf08745.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08745", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pin-5-pf08745.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q58360", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF08745" ], "protein_name": "RNA-free ribonuclease P", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "acaae696dea1df4aeccc525fb046834e65dffeddca4531450bc5b71d164fe664", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGRGMQKQRFCLDTSAFTEPSVRKALGVKTVTELTDKVMDLIAEARIKLNISCHIPYPTVYNELMGFLENENCPRDVIVKVDTWLVKKTPNRYEIKIPSEIFYEYVKDLRERINKGMRIGEEHIIKATDMVYELSKKHPEMGKNEIINKVLSKTINTFRNKYRSALRVGTLDSAPDLDVLLLAKELDAAVVASDGGIEKWAQRLGLRFVDASDFPFMLEEYLKHNDRHLRIKY", "sequence_length": 233, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "acaae696dea1df4aeccc525fb046834e65dffeddca4531450bc5b71d164fe664", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58360.json", "taxon_id": "243232", "uniprot_accession": "Q58360", "uniprot_release": "2026_03" } ], "pfam_id": "PF08745", "short_name": "PIN_5", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus cereus (strain H3081.97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/brxb-pf08747.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/brxb-pf08747.yaml" } ], "pfam_ids": [ "PF08747" ], "protein_name": "BREX protein BrxB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRINERLDEILPKITDASFRENKGLGNEIGFYIFDYDPKYEMLVREHIVYMQERLKNDSSLHIREFDLYEVMLEILEEKGYLQKNIDMEQKKGSDFILNATRKALRLTSNNDLVVQYITDRVQPNDIVFLTGVGKVFPIIRSHTILNNLHKAVDNVPLVMFFPGTYDGLELVLFGEIKDDNYYRAFQLIDK", "sequence_length": 192, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a39dc374b153ad5211c33f66de618461c739f6e4ad1edb3b546c6165b5ba1ec8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DUF1.json", "taxon_id": "451708", "uniprot_accession": "P0DUF1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O9:H4 (strain HS)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/brxb-pf08747.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/brxb-pf08747.yaml" } ], "pfam_ids": [ "PF08747" ], "protein_name": "BREX protein BrxB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIDPVLEYRLSQIQSRINEDRFLKNNGSGNEIGFWIFDYPAQCELQVREHLKYLLRHLEKDHKFACLNVFQIIIDMLNERGLFERVCQQEVKVGTETLKKQLAGPLNQKKIADFIAKKVDLAAQDFVILTGMGNAWPLVRGHELMSALQDVMGFTPLLMFYPGTYSGYNLSPLTDTGSQNYYRAFRLVPDTGPAATLNPQ", "sequence_length": 200, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60d89a814475b63ef94e4e2b94b11c90743ad6ebb5eb9e0ab0fdf4ad5708cfb0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DUF7.json", "taxon_id": "331112", "uniprot_accession": "P0DUF7", "uniprot_release": "2026_03" } ], "pfam_id": "PF08747", "short_name": "BrxB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08748", "short_name": "Phage_TAC_4", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gt-d-pf08759.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08759", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gt-d-pf08759.yaml" } ], "pfam_ids": [ "PF01501", "PF08759", "PF30761" ], "protein_name": "Glycosyltransferase GlyD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKTIVLAGDRNYTRQLETTIKSILYHNRDVKIYILNQDIMPDWFRKPRKIARMLGSEIIDVKLPEQTVFQDWEKQDHISSITYARYFIADYIQEDKVLYLDSDLIVNTSLEKLFSICLEEKSLAAVKDTDGITFNAGVLLINNKKWRQEKLKERLIEQSIVTMKEVEEGRFEHFNGDQTIFNQVLQDDWLELGRAYNLQVGHDIVALYNNWQEHLAFNDKPVVIHFTTYRKPWTTLTANRYRDLWWEFHDLEWSQILQHHMGEFELISPLDKEFSCLTLTNSQDLEGIEELVTALPEVVFHIAAWTDMGDKLKKLAVYNNVRLHPQIVPPVLDKLKKSTNLYLDINHGSADENFLKSLQEQEKTLLAFQSTQHGELGQIVFENGKVSFMIDTIKDFKKNGHLTCFRQLPSLTCLTFTASQYIEQLDYLAGQLPNVVFQIAAWTAMGPKLYDLSNRYPNIQLYPAISRDKLDELKEKMDAYLDINLLTSTSDIVAEMAHLSKPILAFYKSQNGNNGQRLYSSEHPERMLADLQKLITKDMLEKPLDIIQVKGIDETLDYIIEHNSSLVRFGDGEINMLAGHSIPYQDYDEELVSIMRDIIGQESREDLVVCLPDAFTDRFRFTSWAIPFWKDHMDHYMDFYRELCSDSWYGSTFVSRPYIDFEDKSQAKAQFEKLKSIWENRDLLIVEGATSRSGVGNDLFDEANSIKRIICPSHSAFSRVHELEQEIEKYAGGRLILCMLGPTAKVLSYNLCQMGYQVLDVGHIDSEYEWMKMGAKTKVKFSHKHTAEHNFDQDIEFIDDETYNSQIVARILN", "sequence_length": 814, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f6749d917e518f0d3cd9c9c454283964b14edafb53c0f27bb22924721fed6e7", "sequence_version": 1, 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"NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08897", "short_name": "DUF1841", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08898", "short_name": "DUF1843", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08899", "short_name": "DUF1844", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08900", "short_name": "AcaB", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 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"UNIPROT_FETCH", "sequence_sha256": "c7fefe23b2dee4959bbfbc4d8390cdc88b84ab60f04794e527d77d2df0c5c61f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57897.json", "taxon_id": "243232", "uniprot_accession": "Q57897", "uniprot_release": "2026_03" } ], "pfam_id": "PF08901", "short_name": "DUF1847", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08902", "short_name": "DUF1848", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus pyogenes serotype M5 (strain Manfredo)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1846-c-pf20921.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20921", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1846-c-pf20921.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1846-pf08903.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08903", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1846-pf08903.yaml" } ], "pfam_ids": [ "PF08903", "PF20921" ], "protein_name": "UPF0371 protein SpyM50764", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTIAFDSNKYLNLQRDHILERISQFDGKLYMEFGGKMLEDYHAARVLPGYEPDNKIKLLKELKEQVEIVIAINANNIEHSKARGDLGISYDQEVFRLIDKFNTLDIYVGSVVITQYNNQPAADAFRKQLEKNGIASYLHYPIKGYPTDINHIISSEGMGKNDYIKTSRNLIVVTAPGPGSGKLATCMSQMYHDQINGVKSGYAKFETFPVWNLPLHHPVNLAYEAATADLDDVNMIDPFHLETYGKTAVNYNRDIEVFPVLNRTFERILSKSPYASPTDMGVNMVGFSIVNEEAAIEASKQEIIRRYYQTLVDFKAERVTESAVKKIELLMNDIGVTPDDRHVTVAAHQKAEQTGQPALALQLPNGQIVTGKTSELFGPTAAVIINAIKTLAKIDKTTHLIEPEYVKPIQGLKVNHLGSHNPRLHSNEILIALAITAMTSEEANLAMKELGNLKGSEAHSTVILTEEDKNVLRKLGVNITFDPVYQHHKLYRK", "sequence_length": 494, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87f97b220a61cb3f148b43eaa1b50954bcc58a8c02c23d4f5034e4bd949ab6cc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2RE19.json", "taxon_id": "160491", "uniprot_accession": "A2RE19", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus sanguinis (strain SK36)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1846-c-pf20921.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20921", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1846-c-pf20921.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1846-pf08903.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08903", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1846-pf08903.yaml" } ], "pfam_ids": [ "PF08903", "PF20921" ], "protein_name": "UPF0371 protein SSA_0208", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKIAFDSEKYLNLQRDHILERINQFEGKLYMEFGGKMLEDFHAARVLPGYEPDNKIRLLKELKDQVEIVIAINANNIEHSKARGDLGISYDQEVLRLIDTFNELDIYVGSVVITQYSGQPAADLFRSQLEKNGIASYIHYPIKGYPTDMDHIISPEGMGKNDYIKTSRNLVVVTAPGPGSGKLATCLSNMYHDQINGIKSGYAKFETFPVWNLPLHHPVNLAYEAATADLDDVNMIDPFHLQTYGKTTVNYNRDIEIFPVLKRMLERILGKSPYASPTDMGVNMVGFAIVDNDAAIEASQQEIIRRYYQTILDFKAERVSESAVKKIELLMNDLGITPLDRKVTVVARDKAESTGEPALALELPNGEIVTGKTSELFGPTAAVLINAIKKLAHIAKETKLIEPEYVKPIQGLKINHLGSRNPRLHSNEILMALAITAMENQDAANAMQQLGNLKGSEAHSTVTLTDEDKNVLRKLGIHVTMDPVYQYDRLYRK", "sequence_length": 494, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "025111153ebef5044c538c4d9ff44ee566461ba0f04568703f5eb8c799b3449d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A3CKG4.json", "taxon_id": "388919", "uniprot_accession": "A3CKG4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Clostridium botulinum (strain Loch Maree / Type A3)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1846-c-pf20921.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20921", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1846-c-pf20921.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1846-pf08903.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08903", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1846-pf08903.yaml" } ], "pfam_ids": [ "PF08903", "PF20921" ], "protein_name": "UPF0371 protein CLK_3516", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRIGFDHEKYLEEQSKYILERVNNYDKLYLEFGGKLLFDLHAKRVLPGFDENAKIKLLHKLKEKVEIIICLYAGDIERNKIRGDFGITYDVDVLRLIDDLRGYDLEVNSVVITRYSGQPATNIFINKLERRGIKVYKHEATKGYPTDVDTIVSDEGYGKNPYIETTKPIVVVTAPGPGSGKLATCLSQLYHEYKRGNVAGYSKFETFPVWNVPLKHPLNIAYESATVDLKDVNMIDSFHFDAYNKVAVNYNRDIESFPVLKRIIEKITGEESVYKSPTDMGVNRVGFGIVDDEVVKEASKQEIIRRAFKTACEYKKGYVDKETFHRAKLIMEEMNLKEEDRKVVIPAREYAAKLKERANKSETCTVVALELEDGTILTGRSSELMDGTAAVILNAVKHYANISDEIHLISPVILEPIINLKAKTLGSKRTALSCEEVLIALSICAATNPTAQVAMGKLPMLKGCQAHSTTILSTNEEQTFRKLGIDVTCDPEYISESLYYNN", "sequence_length": 502, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "75cf592303ff073b9e240c5173974ab83bc5450a2bbc981d0a06b62ddd031d0d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B1KUD0.json", "taxon_id": "498214", "uniprot_accession": "B1KUD0", "uniprot_release": "2026_03" } ], "pfam_id": "PF08903", "short_name": "DUF1846", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Brucella abortus (strain 2308)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/eipb-like-pf08904.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/eipb-like-pf08904.yaml" } ], "pfam_ids": [ "PF08904" ], "protein_name": "Cell envelope integrity protein EipB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRFVRIAAAASGATVFMWAGFAGAASAASAVRLVPHRAIYDLTLDRADEKSGISGLTGRMVYEFNGSACEGYTTNFRFVTRVDMDEQPQRVTDQQTTTFEDADGKDFRFVNKTFVDKELVKEVRGDAKLEDGKTVVKLSKPKENTLDLKGTQFPTRHMEELIGKAEAGQKFYQTTLFDASEDADRVVATTVVVGKQQAVPDDETKVMGKFSKDQVWPVTIAYFDDKEQQDGMPIYRINFKLYRNGITRDLTMDYGDFSMRGKLVKLDIYDTGKNKTGCSK", "sequence_length": 280, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c2362f2a209659a735d7ff6e44ddcb197e7ed2b3bd5d943e393947c117c105d9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2YRJ0.json", "taxon_id": "359391", "uniprot_accession": "Q2YRJ0", "uniprot_release": "2026_03" } ], "pfam_id": "PF08904", "short_name": "EipB_like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08905", "short_name": "DUF1850", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08906", "short_name": "T6SS_Tdi1_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08907", "short_name": "DUF1853", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08908", "short_name": "MesX", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08909", "short_name": "DUF1854", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aida-c2-pf14186.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14186", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aida-c2-pf14186.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/aida-n-pf08910.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08910", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/aida-n-pf08910.yaml" } ], "pfam_ids": [ "PF08910", "PF14186" ], "protein_name": "Axin interactor, dorsalization-associated protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDVNKTVQKWHASFKKGTDFDSWGQLVEAIDEYQILARQLQKEVQSSNSHDFTEEQKKTLGKFATCLEMRSAALQCTQSQEEFKLEDLKKLEPIIKNILTYNKDFPFDVQPVPLRKILAPGEEENLDVEEDLDAGTGAGSTPSFTSRLPGSLLPRLPSEPGMTLLTLTIEKIGLKDAGQCIDPYITVSVKDLNGIDLNPVQDTPVATRKEDTYIHFSVDVEIQRHLEKLPKGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIKPGPIVIELYKKPTDFKRKKLNLLTKKPLYLHLNQTLHKD", "sequence_length": 303, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f8038a2227224bfc5fca6d817432d0fac2929d2acf1c4137a14ee748ca0d33c6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PBN2.json", "taxon_id": "7955", "uniprot_accession": "Q6PBN2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/determination-of-ventral-identity-go0048264.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0048264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/determination-of-ventral-identity-go0048264.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"uniprot_accession": "O34320", "uniprot_release": "2026_03" } ], "pfam_id": "PF08924", "short_name": "Rv2525c_GlyHyd-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1907-pf08925.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08925", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1907-pf08925.yaml" } ], "pfam_ids": [ "PF08925" ], "protein_name": "Beta-keto L-gulonate decarboxylase", 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"data/traits/function/molecular_function/go/dehydro-l-gulonate-decarboxylase-activity-go0047842.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0047842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/dehydro-l-gulonate-decarboxylase-activity-go0047842.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/proteins-similar-to-putative-ester-hydrolase-c11orf54-ptd012-the-struc-cd17298.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd17298", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/proteins-similar-to-putative-ester-hydrolase-c11orf54-ptd012-the-struc-cd17298.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ester-hydrolase-c11orf54-domain-of-unknown-function-duf1907-ipr015021.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015021", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ester-hydrolase-c11orf54-domain-of-unknown-function-duf1907-ipr015021.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1907-pf08925.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08925", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1907-pf08925.yaml" } ], "pfam_ids": [ "PF08925" ], "protein_name": "Beta-keto L-gulonate decarboxylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MACSEFSFHMPSLEELAEVLQKGLTDNFADVQVSVVDCPDLTKEPFTFPVRGICGQTRIAEVGGVPYLLPLVNKKKVYDLNEIAKVIKLPGAFILGAGAGPFQTLGFNSEFMPIVQTASEHNQPVNGSYFAHKNPADGACLLEKYSQKYHDFGCALLANLFASEGQPGKVIEVQAKRRTGELNFVSCMRQTLEEHYGDKPVGMGGTFIVQKGKVKAHIMPAEFSSCPLNSDEAVNKWLHFYEMKAPLVCLPVFVSKDPGLDLRLEHTHFFSHHGEGGHYHYDTTPDTVEYLGYFSPAQFLYRIDQPKETHAFGRD", "sequence_length": 315, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8befd4628f0d4a5f286ebfb20d0ce84f1b445109299dc84efb3139b4e2177f86", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91V76.json", "taxon_id": "10090", "uniprot_accession": "Q91V76", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/dehydro-l-gulonate-decarboxylase-activity-go0047842.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0047842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/dehydro-l-gulonate-decarboxylase-activity-go0047842.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/proteins-similar-to-putative-ester-hydrolase-c11orf54-ptd012-the-struc-cd17298.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd17298", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/proteins-similar-to-putative-ester-hydrolase-c11orf54-ptd012-the-struc-cd17298.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ester-hydrolase-c11orf54-domain-of-unknown-function-duf1907-ipr015021.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015021", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ester-hydrolase-c11orf54-domain-of-unknown-function-duf1907-ipr015021.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1907-pf08925.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08925", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1907-pf08925.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9H0W9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF08925" ], "protein_name": "Beta-keto L-gulonate decarboxylase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "fa8d8f3a7d0fbbd10732a5cac519ced6b4c85e750ed905c7d8cac59be42a3782", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MACAEFSFHVPSLEELAGVMQKGLKDNFADVQVSVVDCPDLTKEPFTFPVKGICGKTRIAEVGGVPYLLPLVNQKKVYDLNKIAKEIKLPGAFILGAGAGPFQTLGFNSEFMPVIQTESEHKPPVNGSYFAHVNPADGGCLLEKYSEKCHDFQCALLANLFASEGQPGKVIEVKAKRRTGPLNFVTCMRETLEKHYGNKPIGMGGTFIIQKGKVKSHIMPAEFSSCPLNSDEEVNKWLHFYEMKAPLVCLPVFVSRDPGFDLRLEHTHFFSRHGEGGHYHYDTTPDIVEYLGYFLPAEFLYRIDQPKETHSIGRD", "sequence_length": 315, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "fa8d8f3a7d0fbbd10732a5cac519ced6b4c85e750ed905c7d8cac59be42a3782", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H0W9.json", "taxon_id": "9606", "uniprot_accession": "Q9H0W9", "uniprot_release": "2026_03" } ], "pfam_id": "PF08925", "short_name": "DUF1907", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1908-pf08926.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1908-pf08926.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O15021", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00069", "PF08926", "PF17820" ], "protein_name": "Microtubule-associated serine/threonine-protein kinase 4", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "9f045441224bbdcea19b5e1eedccf4b469400f5f13ac46b6bed76905c1a5a693", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGEKVSEAPEPVPRGCSGHGSRTPASALVAASSPGASSAESSSGSETLSEEGEPGGFSREHQPPPPPPLGGTLGARAPAAWAPASVLLERGVLALPPPLPGGAVPPAPRGSSASQEEQDEELDHILSPPPMPFRKCSNPDVASGPGKSLKYKRQLSEDGRQLRRGSLGGALTGRYLLPNPVAGQAWPASAETSNLVRMRSQALGQSAPSLTASLKELSLPRRGSFCRTSNRKSLIGNGQSPALPRPHSPLSAHAGNSPQDSPRNFSPSASAHFSFARRTDGRRWSLASLPSSGYGTNTPSSTVSSSCSSQEKLHQLPYQPTPDELHFLSKHFCTTESIATENRCRNTPMRPRSRSLSPGRSPACCDHEIIMMNHVYKERFPKATAQMEERLKEIITSYSPDNVLPLADGVLSFTHHQIIELARDCLDKSHQGLITSRYFLELQHKLDKLLQEAHDRSESGELAFIKQLVRKILIVIARPARLLECLEFDPEEFYYLLEAAEGHAKEGQGIKTDIPRYIISQLGLNKDPLEEMAHLGNYDSGTAETPETDESVSSSNASLKLRRKPRESDFETIKLISNGAYGAVYFVRHKESRQRFAMKKINKQNLILRNQIQQAFVERDILTFAENPFVVSMYCSFETRRHLCMVMEYVEGGDCATLMKNMGPLPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLVTSMGHIKLTDFGLSKVGLMSMTTNLYEGHIEKDAREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDEINWPEKDEAPPPDAQDLITLLLRQNPLERLGTGGAYEVKQHRFFRSLDWNSLLRQKAEFIPQLESEDDTSYFDTRSEKYHHMETEEEDDTNDEDFNVEIRQFSSCSHRFSKVFSSIDRITQNSAEEKEDSVDKTKSTTLPSTETLSWSSEYSEMQQLSTSNSSDTESNRHKLSSGLLPKLAISTEGEQDEAASCPGDPHEEPGKPALPPEECAQEEPEVTTPASTISSSTLSVGSFSEHLDQINGRSECVDSTDNSSKPSSEPASHMARQRLESTEKKKISGKVTKSLSASALSLMIPGDMFAVSPLGSPMSPHSLSSDPSSSRDSSPSRDSSAASASPHQPIVIHSSGKNYGFTIRAIRVYVGDSDIYTVHHIVWNVEEGSPACQAGLKAGDLITHINGEPVHGLVHTEVIELLLKSGNKVSITTTPFENTSIKTGPARRNSYKSRMVRRSKKSKKKESLERRRSLFKKLAKQPSPLLHTSRSFSCLNRSLSSGESLPGSPTHSLSPRSPTPSYRSTPDFPSGTNSSQSSSPSSSAPNSPAGSGHIRPSTLHGLAPKLGGQRYRSGRRKSAGNIPLSPLARTPSPTPQPTSPQRSPSPLLGHSLGNSKIAQAFPSKMHSPPTIVRHIVRPKSAEPPRSPLLKRVQSEEKLSPSYGSDKKHLCSRKHSLEVTQEEVQREQSQREAPLQSLDENVCDVPPLSRARPVEQGCLKRPVSRKVGRQESVDDLDRDKLKAKVVVKKADGFPEKQESHQKSHGPGSDLENFALFKLEEREKKVYPKAVERSSTFENKASMQEAPPLGSLLKDALHKQASVRASEGAMSDGRVPAEHRQGGGDFRRAPAPGTLQDGLCHSLDRGISGKGEGTEKSSQAKELLRCEKLDSKLANIDYLRKKMSLEDKEDNLCPVLKPKMTAGSHECLPGNPVRPTGGQQEPPPASESRAFVSSTHAAQMSAVSFVPLKALTGRVDSGTEKPGLVAPESPVRKSPSEYKLEGRSVSCLKPIEGTLDIALLSGPQASKTELPSPESAQSPSPSGDVRASVPPVLPSSSGKKNDTTSARELSPSSLKMNKSYLLEPWFLPPSRGLQNSPAVSLPDPEFKRDRKGPHPTARSPGTVMESNPQQREGSSPKHQDHTTDPKLLTCLGQNLHSPDLARPRCPLPPEASPSREKPGLRESSERGPPTARSERSAARADTCREPSMELCFPETAKTSDNSKNLLSVGRTHPDFYTQTQAMEKAWAPGGKTNHKDGPGEARPPPRDNSSLHSAGIPCEKELGKVRRGVEPKPEALLARRSLQPPGIESEKSEKLSSFPSLQKDGAKEPERKEQPLQRHPSSIPPPPLTAKDLSSPAARQHCSSPSHASGREPGAKPSTAEPSSSPQDPPKPVAAHSESSSHKPRPGPDPGPPKTKHPDRSLSSQKPSVGATKGKEPATQSLGGSSREGKGHSKSGPDVFPATPGSQNKASDGIGQGEGGPSVPLHTDRAPLDAKPQPTSGGRPLEVLEKPVHLPRPGHPGPSEPADQKLSAVGEKQTLSPKHPKPSTVKDCPTLCKQTDNRQTDKSPSQPAANTDRRAEGKKCTEALYAPAEGDKLEAGLSFVHSENRLKGAERPAAGVGKGFPEARGKGPGPQKPPTEADKPNGMKRSPSATGQSSFRSTALPEKSLSCSSSFPETRAGVREASAASSDTSSAKAAGGMLELPAPSNRDHRKAQPAGEGRTHMTKSDSLPSFRVSTLPLESHHPDPNTMGGASHRDRALSVTATVGETKGKDPAPAQPPPARKQNVGRDVTKPSPAPNTDRPISLSNEKDFVVRQRRGKESLRSSPHKKAL", "sequence_length": 2623, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "9f045441224bbdcea19b5e1eedccf4b469400f5f13ac46b6bed76905c1a5a693", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/O15021.json", "taxon_id": "9606", "uniprot_accession": "O15021", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1908-pf08926.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1908-pf08926.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/protein-kinase-st.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00108", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/protein-kinase-st.yaml" } ], "pfam_ids": [ "PF00069", "PF08926", "PF17820" ], "protein_name": "Microtubule-associated serine/threonine-protein kinase 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDESSLLRRRGLQKELSLPRRGRGCRSGNRKSLVVGTPSPTLSRPLSPLSVPTAGSSPLDSPRNFSAASALNFPFARRADGRRWSLASLPSSGYGTNTPSSTLSSSSSSRERLHQLPFQPTPDELHFLSKHFRSSENVLDEEGGRSPRLRPRSRSLSPGRATGTFDNEIVMMNHVYRERFPKATAQMEGRLQEFLTAYAPGARLALADGVLGFIHHQIVELARDCLAKSGENLVTSRYFLEMQEKLERLLQDAHERSDSEEVSFIVQLVRKLLIIISRPARLLECLEFDPEEFYHLLEAAEGHAREGQGIKTDLPQYIIGQLGLAKDPLEEMVPLSHLEEEQPPAPESPESRALVGQSRRKPCESDFETIKLISNGAYGAVYLVRHRDTRQRFAIKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETRRHLCMVMEYVEGGDCATLLKNMGPLPVDMARLYFAETVLALEYLHNYGIVHRDLKPDNLLITSLGHIKLTDFGLSKIGLMSMATNLYEGHIEKDAREFIDKQVCGTPEYIAPEVIFRQGYGKPVDWWAMGVVLYEFLVGCVPFFGDTPEELFGQVVSDEIMWPEGDEALPADAQDLITRLLRQSPLDRLGTGGTHEVKQHPFFLALDWAGLLRHKAEFVPQLEAEDDTSYFDTRSERYRHLGSEDDETNDEESSTEIPQFSSCSHRFSKVYSSSEFLAVQPTPTFAERSFSEDREEGWERSEVDYGRRLSADIRLRSWTSSGSSCQSSSSQPERGPSPSLLNTISLDTMPKFAFSSEDEGVGPGPAGPKRPVFILGEPDPPPAATPVMPKPSSLSADTAALSHARLRSNSIGARHSTPRPLDAGRGRRLGGPRDPAPEKSRASSSGGSGGGSGGRVPKSASVSALSLIITADDGSGGPLMSPLSPRSLSSNPSSRDSSPSRDPSPVCGSLRPPIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTALENTSIKVGPARKNVAKGRMARRSKRSRRRETQDRRKSLFKKISKQTSVLHTSRSFSSGLHHSLSSSESLPGSPTHSLSPSPTTPCRSPAPDVPADTTASPPSASPSSSSPASPAAAGHTRPSSLHGLAAKLGPPRPKTGRRKSTSSIPPSPLACPPISAPPPRSPSPLPGHPPAPARSPRLRRGQSADKLGTGERLDGEAGRRTRGPEAELVVMRRLHLSERRDSFKKQEAVQEVSFDEPQEEATGLPTSVPQIAVEGEEAVPVALGPTGRD", "sequence_length": 1309, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c7d1c6f8a6b505f4e49ea281bc3c4a34c70ebad214c5a7ddb40c1392925f3745", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O60307.json", "taxon_id": "9606", "uniprot_accession": "O60307", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1908-pf08926.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1908-pf08926.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q6P0Q8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00069", "PF08926", "PF17820" ], "protein_name": "Microtubule-associated serine/threonine-protein kinase 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6eb756706b1a73df4b1c21a0429c59bf60233edddeaa786d494f2aebb6e17c2d", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKRSRCRDRPQPPPPDRREDGVQRAAELSQSLPPRRRAPPGRQRLEERTGPAGPEGKEQDVVTGVSPLLFRKLSNPDIFSSTGKVKLQRQLSQDDCKLWRGNLASSLSGKQLLPLSSSVHSSVGQVTWQSSGEASNLVRMRNQSLGQSAPSLTAGLKELSLPRRGSFCRTSNRKSLIVTSSTSPTLPRPHSPLHGHTGNSPLDSPRNFSPNAPAHFSFVPARRTDGRRWSLASLPSSGYGTNTPSSTVSSSCSSQEKLHQLPFQPTADELHFLTKHFSTESVPDEEGRQSPAMRPRSRSLSPGRSPVSFDSEIIMMNHVYKERFPKATAQMEERLAEFISSNTPDSVLPLADGALSFIHHQVIEMARDCLDKSRSGLITSQYFYELQDNLEKLLQDAHERSESSEVAFVMQLVKKLMIIIARPARLLECLEFDPEEFYHLLEAAEGHAKEGQGIKCDIPRYIVSQLGLTRDPLEEMAQLSSCDSPDTPETDDSIEGHGASLPSKKTPSEEDFETIKLISNGAYGAVFLVRHKSTRQRFAMKKINKQNLILRNQIQQAFVERDILTFAENPFVVSMFCSFDTKRHLCMVMEYVEGGDCATLLKNIGALPVDMVRLYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDAREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDEIVWPEGDEALPPDAQDLTSKLLHQNPLERLGTGSAYEVKQHPFFTGLDWTGLLRQKAEFIPQLESEDDTSYFDTRSERYHHMDSEDEEEVSEDGCLEIRQFSSCSPRFNKVYSSMERLSLLEERRTPPPTKRSLSEEKEDHSDGLAGLKGRDRSWVIGSPEILRKRLSVSESSHTESDSSPPMTVRRRCSGLLDAPRFPEGPEEASSTLRRQPQEGIWVLTPPSGEGVSGPVTEHSGEQRPKLDEEAVGRSSGSSPAMETRGRGTSQLAEGATAKAISDLAVRRARHRLLSGDSTEKRTARPVNKVIKSASATALSLLIPSEHHTCSPLASPMSPHSQSSNPSSRDSSPSRDFLPALGSMRPPIIIHRAGKKYGFTLRAIRVYMGDSDVYTVHHMVWHVEDGGPASEAGLRQGDLITHVNGEPVHGLVHTEVVELILKSGNKVAISTTPLENTSIKVGPARKGSYKAKMARRSKRSRGKDGQESRKRSSLFRKITKQASLLHTSRSLSSLNRSLSSGESGPGSPTHSHSLSPRSPTQGYRVTPDAVHSVGGNSSQSSSPSSSVPSSPAGSGHTRPSSLHGLAPKLQRQYRSPRRKSAGSIPLSPLAHTPSPPPPTASPQRSPSPLSGHVAQAFPTKLHLSPPLGRQLSRPKSAEPPRSPLLKRVQSAEKLAAALAASEKKLATSRKHSLDLPHSELKKELPPREVSPLEVVGARSVLSGKGALPGKGVLQPAPSRALGTLRQDRAERRESLQKQEAIREVDSSEDDTEEGPENSQGAQELSLAPHPEVSQSVAPKGAGESGEEDPFPSRDPRSLGPMVPSLLTGITLGPPRMESPSGPHRRLGSPQAIEEAASSSSAGPNLGQSGATDPIPPEGCWKAQHLHTQALTALSPSTSGLTPTSSCSPPSSTSGKLSMWSWKSLIEGPDRASPSRKATMAGGLANLQDLENTTPAQPKNLSPREQGKTQPPSAPRLAHPSYEDPSQGWLWESECAQAVKEDPALSITQVPDASGDRRQDVPCRGCPLTQKSEPSLRRGQEPGGHQKHRDLALVPDELLKQT", "sequence_length": 1798, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6eb756706b1a73df4b1c21a0429c59bf60233edddeaa786d494f2aebb6e17c2d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P0Q8.json", "taxon_id": "9606", "uniprot_accession": "Q6P0Q8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9Y2H9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00069", "PF08926", "PF17820" ], "protein_name": "Microtubule-associated serine/threonine-protein kinase 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8ea18cfc19b97700ee4fd0296f003c94594fb857bae75e84e719b5c40366e410", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSDSLWTALSNFSMPSFPGGSMFRRTKSCRTSNRKSLILTSTSPTLPRPHSPLPGHLGSSPLDSPRNFSPNTPAHFSFASSRRADGRRWSLASLPSSGYGTNTPSSTVSSSCSSQERLHQLPYQPTVDELHFLSKHFGSTESITDEDGGRRSPAVRPRSRSLSPGRSPSSYDNEIVMMNHVYKERFPKATAQMEEKLRDFTRAYEPDSVLPLADGVLSFIHHQIIELARDCLTKSRDGLITTVYFYELQENLEKLLQDAYERSESLEVAFVTQLVKKLLIIISRPARLLECLEFNPEEFYHLLEAAEGHAKEGHLVKTDIPRYIIRQLGLTRDPFPDVVHLEEQDSGGSNTPEQDDLSEGRSSKAKKPPGENDFDTIKLISNGAYGAVYLVRHRDTRQRFAMKKINKQNLILRNQIQQAFVERDILTFAENPFVVGMFCSFETRRHLCMVMEYVEGGDCATLLKNIGALPVEMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKMGLMSLTTNLYEGHIEKDAREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDILWPEGDEALPTEAQLLISSLLQTNPLVRLGAGGAFEVKQHSFFRDLDWTGLLRQKAEFIPHLESEDDTSYFDTRSDRYHHVNSYDEDDTTEEEPVEIRQFSSCSPRFSKVYSSMEQLSQHEPKTPVAAAGSSKREPSTKGPEEKVAGKREGLGGLTLREKTWRGGSPEIKRFSASEASFLEGEASPPLGARRRFSALLEPSRFSAPQEDEDEARLRRPPRPSSDPAGSLDARAPKEETQGEGTSSAGDSEATDRPRPGDLCPPSKDGDASGPRATNDLVLRRARHQQMSGDVAVEKRPSRTGGKVIKSASATALSVMIPAVDPHGSSPLASPMSPRSLSSNPSSRDSSPSRDYSPAVSGLRSPITIQRSGKKYGFTLRAIRVYMGDTDVYSVHHIVWHVEEGGPAQEAGLCAGDLITHVNGEPVHGMVHPEVVELILKSGNKVAVTTTPFENTSIRIGPARRSSYKAKMARRNKRPSAKEGQESKKRSSLFRKITKQSNLLHTSRSLSSLNRSLSSSDSLPGSPTHGLPARSPTHSYRSTPDSAYLGASSQSSSPASSTPNSPASSASHHIRPSTLHGLSPKLHRQYRSARCKSAGNIPLSPLAHTPSPTQASPPPLPGHTVGSSHTTQSFPAKLHSSPPVVRPRPKSAEPPRSPLLKRVQSAEKLGASLSADKKGALRKHSLEVGHPDFRKDFHGELALHSLAESDGETPPVEGLGAPRQVAVRRLGRQESPLSLGADPLLPEGASRPPVSSKEKESPGGAEACTPPRATTPGGRTLERDVGCTRHQSVQTEDGTGGMARAVAKAALSPVQEHETGRRSSSGEAGTPLVPIVVEPARPGAKAVVPQPLGADSKGLQEPAPLAPSVPEAPRGRERWVLEVVEERTTLSGPRSKPASPKLSPEPQTPSLAPAKCSAPSSAVTPVPPASLLGSGTKPQVGLTSRCPAEAVPPAGLTKKGVSSPAPPGP", "sequence_length": 1570, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8ea18cfc19b97700ee4fd0296f003c94594fb857bae75e84e719b5c40366e410", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y2H9.json", "taxon_id": "9606", "uniprot_accession": "Q9Y2H9", "uniprot_release": "2026_03" } ], "pfam_id": "PF08926", "short_name": "DUF1908", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08928", "short_name": "PoNi_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08929", "short_name": "PoNi_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08930", "short_name": "DUF1912", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lactococcus phage SK1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/caudo-bapla-n-pf20747.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/caudo-bapla-n-pf20747.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/caudo-bapla-rbp-neck-pf21564.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21564", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/caudo-bapla-rbp-neck-pf21564.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/caudo-bapla-rbp-pf08931.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08931", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/caudo-bapla-rbp-pf08931.yaml" } ], "pfam_ids": [ "PF08931", "PF20747", "PF21564" ], "protein_name": "Receptor binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIKNFTFFSPNSTEFPVGSNNDGKLYMMLTGMDYRTIRRKDWSSPLNTALNVQYTNTSIIAGGRYFELLNETVALKGNAVNYIHANIDLTRTANPVSLSAETSNNSNGVDINNGSGVLKVCFDIVTTSGTGVTSTKPTVQTSTLDSISVNDMTVSGSIDVPVQTLTVEAGNGLDLQLTKKNNDLVIVRFFGSVSNIQKGWNMSGTWVDRPFRPAVVQSLVGHFAGRDTSFHIDINPNGSITWWGESIDNTPIATRGNGSYFIK", "sequence_length": 264, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7e1543b9cbec13c0daed1b2a58039b79448ef6ca1ace2f91e7da6ec2b1e67183", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O21886.json", "taxon_id": "2905675", "uniprot_accession": "O21886", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lactococcus phage p2", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/caudo-bapla-n-pf20747.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/caudo-bapla-n-pf20747.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/caudo-bapla-rbp-neck-pf21564.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21564", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/caudo-bapla-rbp-neck-pf21564.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/caudo-bapla-rbp-pf08931.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08931", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/caudo-bapla-rbp-pf08931.yaml" } ], "pfam_ids": [ "PF08931", "PF20747", "PF21564" ], "protein_name": "Receptor binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIKNFTFFSPNSTEFPVGSNNDGKLYMMLTGMDYRTIRRKDWSSPLNTALNVQYTNTSIIAGGRYFELLNETVALKGDSVNYIHANIDLTQTANPVSLSAETANNSNGVDINNGSGVLKVCFDIVTTSGTGVTSTKPIVQTSTLDSISVNDMTVSGSIDVPVQTLTVEAGNGLQLQLTKKNNDLVIVRFFGSVSNIQKGWNMSGTWVDRPFRPAAVQSLVGHFAGRDTSFHIDINPNGSITWWGANIDKTPIATRGNGSYFIK", "sequence_length": 264, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "874dd55181ecd21d795a512091889d5ae359ddc7f7385be9574ff0124af1656f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q71AW2.json", "taxon_id": "254252", "uniprot_accession": "Q71AW2", "uniprot_release": "2026_03" } ], "pfam_id": "PF08931", "short_name": "Caudo_bapla_RBP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas chlororaphis", "origins": [ { "cited_uniprot_accession": "A8W2Z1", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/pyrrolnitrin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:32079", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/pyrrolnitrin.yaml" } ], "pfam_ids": [ "PF08933" ], "protein_name": "DUF1864 family protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MERTLDRVSAFAATHAAVAACDPLQARSLVLQLPGLNRNKDVPGIVGLLREFLPARGVPSGWGFVEAAAAMRDIGFFLGSLKRHGHEPADVVPGLEPVLLDLARATDLPPRETLLHVTVWNPAAADAQRSYTGLPDEAHLLESVRISMATLEAAIAVTVELSEVPLRSPAFAPGCDELAAYLQKMVESIVYAYRFISPQVFYDELRPFYEPIRVGGQSYLGPGAVEMPLFVLEHVLWGSQSDDQVYREFKETYLPYVLPAYRAVYARFAGRPALIDRVLGEARVGARGEPVRAGLTALERVFKVLLRFRAPHLKLAERAYEVGRSGPTTGSGGYAPSMLGDLLTLTCAARSRIRAVLDES", "sequence_length": 360, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60ec75fbbe1545ed710e95b2ee043459a357eea9191b25d34dec62a93f85afd7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8W2Z1.json", "taxon_id": "587753", "uniprot_accession": "A8W2Z1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas fluorescens", "origins": [ { "cited_uniprot_accession": "P95481", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/pyrrolnitrin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:32079", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/pyrrolnitrin.yaml" } ], "pfam_ids": [ "PF08933" ], "protein_name": "Monodechloroaminopyrrolnitrin synthase PrnB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERTLDRVGVFAATHAAVAACDPLQARALVLQLPGLNRNKDVPGIVGLLREFLPVRGLPCGWGFVEAAAAMRDIGFFLGSLKRHGHEPAEVVPGLEPVLLDLARATNLPPRETLLHVTVWNPTAADAQRSYTGLPDEAHLLESVRISMAALEAAIALTVELFDVSLRSPEFAQRCDELEAYLQKMVESIVYAYRFISPQVFYDELRPFYEPIRVGGQSYLGPGAVEMPLFVLEHVLWGSQSDDQTYREFKETYLPYVLPAYRAVYARFSGEPALIDRALDEARAVGTRDEHVRAGLTALERVFKVLLRFRAPHLKLAERAYEVGQSGPEIGSGGYAPSMLGELLTLTYAARSRVRAALDES", "sequence_length": 361, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f9624839c01297214949cf1c956188525ae60ca57b5e29f5919f2d9e44d4cddb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P95481.json", "taxon_id": "294", "uniprot_accession": "P95481", "uniprot_release": "2026_03" } ], "pfam_id": "PF08933", "short_name": "PrnB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08935", "short_name": "VP4_2", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08937", "short_name": "ThsB_TIR", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hbs1-n-pf08938.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hbs1-n-pf08938.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P32769", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00009", "PF08938", "PF22594" ], "protein_name": "Elongation factor 1 alpha-like protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3ea89aa245e8060bc7da103994dce177b1b3b9e26ab8b8918434d843ac282eac", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAYSDYSDGADDMPDFHDEGEFDDYLNDDEYDLMNEVFPTLKAQLQDYQGWDNLSLKLALFDNNFDLESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANISISQQRPNDRLPDWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ", "sequence_length": 611, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3ea89aa245e8060bc7da103994dce177b1b3b9e26ab8b8918434d843ac282eac", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P32769.json", "taxon_id": "559292", "uniprot_accession": "P32769", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hbs1-n-pf08938.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hbs1-n-pf08938.yaml" } ], "pfam_ids": [ "PF00009", "PF03144", "PF08938", "PF22594" ], "protein_name": "HBS1-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPSTAAQFIYSRRDNPEEEYGYEDLRESSNSLLNHQLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQDGVQPWKEKSERAVCAGQPSKGKSVISRSSQSESEIVPKVAKMTVSGKKQTMGFEVPGLTSEENGLSVRAPHKGPPGDDVSVASPNIPETGTPKSALPPPSLQTSEELGSTPTPVRKSGKLRQQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLTARSQSSDLTTWYKGMCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVNLTLVGMDIIKINVGCIFCGPKEPIKACTRFRARILVFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYGGSTVAAGVVTEIKE", "sequence_length": 682, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "322358c488ecbe20f534687baa0fe9641be79f830f52d9eba388c89927adb63e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q69ZS7.json", "taxon_id": "10090", "uniprot_accession": "Q69ZS7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gtp-eef1a-c-pf22594.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22594", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gtp-eef1a-c-pf22594.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hbs1-n-pf08938.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hbs1-n-pf08938.yaml" } ], "pfam_ids": [ "PF00009", "PF03144", "PF08938", "PF22594" ], "protein_name": "HBS1-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPSTAAQFIYSRRDKPSVEPVEEYDYEDLKESSNSVSNHQLSGFDQARLYSCLDHMREVLGDAVPDEILIEAVLKNKFDVQKALSGVLEQDRVQSLKDKNEATVSTGKIAKGKPVDSQTSRSESEIVPKVAKMTVSGKKQTMGFEVPGVSSEENGHSFHTPQKGPPIEDAIASSDVLETASKSANPPHTIQASEEQSSTPAPVKKSGKLRQQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEITGKLGHFLKQAGFKESDVGFIPTSGLSGENLITRSQSSELTKWYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCITGKIEAGYIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKVPIKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVVTEIKE", "sequence_length": 684, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d243a65cb958812c204bb0784ceb2e0003275a88285559e5fdfb6f15bf269aec", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y450.json", "taxon_id": "9606", "uniprot_accession": "Q9Y450", "uniprot_release": "2026_03" } ], "pfam_id": "PF08938", "short_name": "HBS1_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bles03-pf08939.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bles03-pf08939.yaml" } ], "pfam_ids": [ "PF08939" ], "protein_name": "UPF0696 protein C11orf68 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAAAAVAGAGRGGGGGADPGQERSRARSWVGAERSEGRRMEPNEELEEEDSPGGREDGFTAEHLAAEAMAADMDPWLVFDARTTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAAYGQGYTPNSGDVQGLQAAWEALQTSGRPITPGTLRQLAITHHVLSGKWLIHLAPGFKLDHAWAGIARAVVEGRLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRFQLGGNARGSRVLDRANNVELT", "sequence_length": 292, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e9de0163dcf2a695ccf9e0d5671ce88d8aacab98461da99e05ee6ec2fe714773", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q566Q8.json", "taxon_id": "10116", "uniprot_accession": "Q566Q8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bles03-pf08939.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bles03-pf08939.yaml" } ], "pfam_ids": [ "PF08939" ], "protein_name": "UPF0696 protein C11orf68 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAAAAVAGAGRGGGGGGGGGGAADPGQERSRARSWVGAERSEGRRMEPNEELEEEDSPGGREDGFTAEHLAAEAMAADMDPWLVFDARTTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAAYGQGYTPNSGDVQGLQAAWEALQTSGRPITPGTLRQLAITHHVLSGKWLIHLSPGFKLDHAWAGIARAVVEGRLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRFQLGGNTRGSRVLDRANNVELT", "sequence_length": 298, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "89933fb58cb042f18e16aed2c6c46ebe23ad19ccc96f92c7a5371b5dfb9aba29", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VD62.json", "taxon_id": "10090", "uniprot_accession": "Q8VD62", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bles03-pf08939.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bles03-pf08939.yaml" } ], "pfam_ids": [ "PF08939" ], "protein_name": "UPF0696 protein C11orf68", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAAAAAVAGVGRGGGGAEPRQERSRARGWAGVERSEGRRMEPGEELEEEGSPGGREDGFTAEHLAAEAMAADMDPWLVFDARTTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAVYGQGYSPNSGDVQGLQAAWEALQTSGRPITPGTLRQLAITHHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGQLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRFQLGGSARGSRVLDRANNVELT", "sequence_length": 292, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7ad87ada039b55c7ffd5b99e7ea595b792cf1246d2dfbea4cb0325fb9a0cf439", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H3H3.json", "taxon_id": "9606", "uniprot_accession": "Q9H3H3", "uniprot_release": "2026_03" } ], "pfam_id": "PF08939", "short_name": "Bles03", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1918-pf08940.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1918-pf08940.yaml" } ], "pfam_ids": [ "PF08940" ], "protein_name": "Uncharacterized protein MT2359", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHAKVGDYLVVKGTTTERHDQHAEIIEVRSADGSPPYVVRWLVNGHETTVYPGSDAVVVTATEHAEAEKRAAARAGHAAT", "sequence_length": 80, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1e77f0e3860669daefd7a21cd48073a77d66df02a5baf159f34c95791847bb06", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLD4.json", "taxon_id": "83331", "uniprot_accession": "P9WLD4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1918-pf08940.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1918-pf08940.yaml" } ], "pfam_ids": [ "PF08940" ], "protein_name": "Uncharacterized protein Rv2302", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHAKVGDYLVVKGTTTERHDQHAEIIEVRSADGSPPYVVRWLVNGHETTVYPGSDAVVVTATEHAEAEKRAAARAGHAAT", "sequence_length": 80, 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"commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1899-ipr015048.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015048", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1899-ipr015048.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trimerisation-motif-ipr015049.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015049", "section": "canonical_examples", "url": 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"PF16300" ], "protein_name": "Coronin-1A", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "824168a353a6fa9e4a03407d5caa7399fa2a6f8efeedcf13c93293e102fcf95c", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1899-ipr015048.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015048", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1899-ipr015048.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/wd-repeats-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00678", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/wd-repeats-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf1899-pf08953.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08953", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf1899-pf08953.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/wd40-4-pf16300.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/wd40-4-pf16300.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/wd40-pf00400.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00400", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/wd40-pf00400.yaml" } ], "pfam_ids": [ "PF00400", "PF08953", "PF16300" ], "protein_name": "Coronin-7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNRFRVSKFRHTEARPPRRESWISDIRAGTAPSCRNHIKSSCSLIAFNSDRPGVLGIVPLQGQGEDKRRVAHLGCHSDLVTDLDFSPFDDFLLATGSADRTVKLWRLPGPGQALPSAPGVVLGPEDLPVEVLQFHPTSDGILVSAAGTTVKVWDAAKQQPLTELAAHGDLVQSAVWSRDGALVGTACKDKQLRIFDPRTKPRASQSTQAHENSRDSRLAWMGTWEHLVSTGFNQMREREVKLWDTRFFSSALASLTLDTSLGCLVPLLDPDSGLLVLAGKGERQLYCYEVVPQQPALSPVTQCVLESVLRGAALVPRQALAVMSCEVLRVLQLSDTAIVPIGYHVPRKAVEFHEDLFPDTAGCVPATDPHSWWAGDNQQVQKVSLNPACRPHPSFTSCLVPPAEPLPDTAQPAVMETPVGDADASEGFSSPPSSLTSPSTPSSLGPSLSSTSGIGTSPSLRSLQSLLGPSSKFRHAQGTVLHRDSHITNLKGLNLTTPGESDGFCANKLRVAVPLLSSGGQVAVLELRKPGRLPDTALPTLQNGAAVTDLAWDPFDPHRLAVAGEDARIRLWRVPAEGLEEVLTTPETVLTGHTEKICSLRFHPLAANVLASSSYDLTVRIWDLQAGADRLKLQGHQDQIFSLAWSPDGQQLATVCKDGRVRVYRPRSGPEPLQEGPGPKGGRGARIVWVCDGRCLLVSGFDSQSERQLLLYEAEALAGGPLAVLGLDVAPSTLLPSYDPDTGLVLLTGKGDTRVFLYELLPESPFFLECNSFTSPDPHKGLVLLPKTECDVREVELMRCLRLRQSSLEPVAFRLPRVRKEFFQDDVFPDTAVIWEPVLSAEAWLQGANGQPWLLSLQPPDMSPVSQAPREAPARRAPSSAQYLEEKSDQQKKEELLNAMVAKLGNREDPLPQDSFEGVDEDEWD", "sequence_length": 925, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c063441da2997127c99e7da1dbc3a8173fbbc4ee31f3a968248fff0bb92f60fa", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P57737.json", "taxon_id": "9606", "uniprot_accession": "P57737", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "Q06440", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/cytoskeleton/actin_body.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0099079", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/cytoskeleton/actin_body.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/actin-filament-debranching-go0071846.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/actin-filament-debranching-go0071846.yaml" } ], "pfam_ids": [ "PF00400", "PF08953", "PF16300" ], "protein_name": "Coronin-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGKFVRASKYRHVFGQAAKKELQYEKLKVTNNAWDSNLLKTNGKFIAVNWNASGGGAFAVIPIEEVGKAPDQVPLFRGHTAQVLDTDFDPFNDHRIASGSDDSKIGIWDIPENYKFHDHVDEDGEPIDIKPVKFLTGHARKVGHVLYHPVAENVLASSSGDYTVKLWNVETGKDMITLKHPDMVTSMSFSYDGNYLATVARDKKLRVWNIREEKIVSEGPAHTGAKNQRVVWLGNSDRLATTGFSKLSDRQIGIWDAFNIEKGDLGGFYTVDQSSGILMPFYDEGNKILYLVGKGDGNIRYYEFQNDELFELSEFQSTEAQRGFAVAPKRMVNVKENEVLKGFKTVVDQRIEPVSFFVPRRSEEFQEDIYPDAPSNKPALTAEEWFSGKSVEGPILVSMRSIYDGSAPSFHEAKRPQQPTTQETALEEKKEQPKVEKPISESEKEVKQEAPKSPSPLKSASSSSTINHVLKEDNSINKLLKKSSDIDQVNNAEDPSRDTSGWEEADDEPAPIKIETPVTPTETKKDRTPKVEPSKELKPEPVSIATDRKQEQSLPQEEKSSEKTKSPEQEKSATPPSSITAAKTAITASSKEEPSAARTSPKSLGLKKSVEKLSTLVLQLEDVVDKLTKANLDKDERLLKLEQKIGELSK", "sequence_length": 651, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ac0de2349d12d2ee794f6d5b7f7e07733374b9f3183e5dee54870ef7ac538c80", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06440.json", "taxon_id": "559292", "uniprot_accession": "Q06440", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-cellular-component-organization-go0051129.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051129", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-cellular-component-organization-go0051129.yaml" } ], "pfam_ids": [ "PF00400", "PF08953", "PF16300" ], "protein_name": "Coronin-6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLDIDWCPHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDMHPDVIHSVCWNSNGSLLATTCKDKTLRIIDPRKGQVVAEQARPHEGARPLRAVFTADGKLLSTGFSRMSERQLALWDPNNFEEPVALQEMDTSNGVLLPFYDPDSSIVYLCGKGDSSIRYFEITDEPPFVHYLNTFSSKEPQRGMGFMPKRGLDVSKCEIARFYKLHERKCEPIIMTVPRKSDLFQDDLYPDTPGPEPALEADEWLSGQDAEPVLISLRDGYVPPKHRELRVTKRNILDVRPPSGPRRSQSASDAPLSQQHTLETLLEEIKALRERVQAQEQRITALENMLCELVDGTD", "sequence_length": 472, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ae6ae2071689fea46ae0fc113b308b77c1fc8f04cba9389b6406980906ec57ee", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6QEF8.json", "taxon_id": "9606", "uniprot_accession": "Q6QEF8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/talin-binding-go1990147.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/talin-binding-go1990147.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-establishment-of-protein-localization-go1904950.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1904950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-establishment-of-protein-localization-go1904950.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-glomerular-filtration-go0003093.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0003093", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-glomerular-filtration-go0003093.yaml" } ], "pfam_ids": [ "PF00400", "PF08953", "PF16300" ], "protein_name": "Coronin-2B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVTKMSWRPQYRSSKFRNVYGKAANREHCFDGIPITKNVHDNHFCAVNARFLAIVTESAGGGSFLVIPLEQTGRIEPNYPKVCGHQGNVLDIKWNPFIDNIIASCSEDTSVRIWEIPDGGLKRNMTEALLELHGHSRRVGLVEWHPTTNNILFSAGYDYKVLIWNLDIGEPVKMIDCHTDVILCMSFNTDGSLLTTTCKDKKLRVIEPRSGRVLQEANCKNHRVNRVVFLGNMKRLLTTGVSRWNTRQIALWDQEDLSMPMIEEEIDGLSGLLFPFYDADTHMLYLAGKGDGNIRYYEISTEKPYLSYLMEFRSPAPQKGLGVMPKHGLDVSACEVFRFYKLVTLKGLIEPISMIVPRRSDSYQEDIYPMTPGTEPALTPDEWLGGINRDPVLMSLKEGYKKSSKVVFKAPIREKKSVVVNGIDLLENVPPRTENELLRMFFRQQDEIRRLKEELAQKDIRLRQLQLELKNLRNNPKNC", "sequence_length": 480, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dbe3f67e2245470d6e03c41828c8fa74e1ef8c82d1644f18890a589c60bcd1e0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BH44.json", "taxon_id": "10090", "uniprot_accession": "Q8BH44", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trimer-cc-pf08954.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08954", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trimer-cc-pf08954.yaml" } ], "pfam_ids": [ "PF00400", "PF08953", "PF08954", "PF16300" ], "protein_name": "Coronin-1A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQNTWDSGFCAVNPKFVALICEASGGGAFLVLPLGKTGRVDKNVPMVCGHTAPVLDIAWCPHNDNVIASGSEDCSVMVWEIPDGGLTLPLREPVVTLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGVAVLTLGSDVHPDTIYSVDWSRDGALICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHERKCEPIAMTVPRKSDLFQEDLYPPTAGPDAALTAEEWLGGRDAGPLLISLKDGYVPPKSRELRVNRGLDTGRKRTTPEASGAPSSDAISRLEEEMRKLQATVQELQKRLDRLEETVQAK", "sequence_length": 461, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "63994e54f7872d81aff92cfd2fe2e9bfced1fd462088f81768a95b48e8a4c8ff", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q92176.json", "taxon_id": "9913", "uniprot_accession": "Q92176", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/actin-filament-branching-go0090135.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090135", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/actin-filament-branching-go0090135.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-smooth-muscle-cell-chemotaxis-go0071672.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071672", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-smooth-muscle-cell-chemotaxis-go0071672.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-lamellipodium-morphogenesis-go2000394.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000394", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-lamellipodium-morphogenesis-go2000394.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-localization-to-cell-leading-edge-go1902463.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1902463", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-localization-to-cell-leading-edge-go1902463.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1899-ipr015048.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015048", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1899-ipr015048.yaml" } ], "pfam_ids": [ "PF00400", 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"data/traits/sequence/domain/pfam/usp8-dimer-pf08969.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/usp8-dimer-pf08969.yaml" } ], "pfam_ids": [ "PF01398", "PF08969" ], "protein_name": "AMSH-like protease", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEQPFTVNSLKKLAAMPDHTDVSLSPEERVRALSKLGCNISINEDITPRRYFRSGVEMERMASVYLEEGNLENAFVLYNKFITLFVEKLPSHRDYQQCAVPEKQDIMKKLKEIAFPRTDELKTDLLRKYNIEYQEYLQSKNKYKAEILKKLEHQRLIEAERQRIAQMRQQQLESEQFLFFEDQLKKQELARGQIRGQDSPVLSEQTDGSALSCFSTHQSNSLRNAFADHPHKSDGSNFANYSPPVNRALKPAATLSAVQNLVVEGLRCVVLSRDLCHKFLLLADSNTVRGIETCGILCGKLTHNEFTITHVVVPKQSAGPDYCDVENVEELFNVQDQHGLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSTCKKKGFHPHTKDPKLFSICSHVLVKDIKTTVLDLR", "sequence_length": 436, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "41d6b5879f0824ad8baac3cf668b8e3d24f729c4bd4db76a32eada63fd92d064", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q76N33.json", "taxon_id": "10090", "uniprot_accession": "Q76N33", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/usp8-dimer-pf08969.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/usp8-dimer-pf08969.yaml" } ], "pfam_ids": [ "PF00443", "PF00581", "PF08969", "PF20625" ], "protein_name": "Ubiquitin carboxyl-terminal hydrolase 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPAVASVPKELYLSSSLKDLNKKTEVKPEKTSTKNYIHSAQKIFKTAEECRLDRDEERAYVLYMKYVAVYNLIKKRPDFKQQQDYYLSILGPANIKKAIEEAERLSESLKLRYEEAEVRKQLEEKDRREEEQLQQQKRQEMGREDSGAAAKRSVENLLDSKTKTQRINGEKSEGAAAAERGAITAKELYTMMMDKNTSLIIMDARKIQDYQHSCILDSLSVPEEAISPGVTASWIEANLSDDSKDTWKKRGSVDYVVLLDWFSSAKDLLLGTTLRSLKDALFKWESKTVLRHEPLVLEGGYENWLLCYPQFTTNAKVTPPPRSRAEEVSVSLDFTYPSLEEPVPSKLPTQMPPPPIETNEKALLVTDQDEKLRLSTQPALAGPGAAPRAEASPIIQPAPATKSVPQVDRTKKPSVKLPEDHRIKSENTDQSGRVLSDRSTKPVFPSPTTMLTDEEKARIHQETALLMEKNKQEKELWDKQQKEQKEKLRREEQERKAGKTQDADERDSTENQHKAKDGQEKKDSKQTKTEDRELSADGAQEATGTQRQSKSEHEASDAKVPVEGKRCPTSEAQKRPADVSPASVSGELNAGKAQREPLTRARSEEMGRIVPGLPLGWAKFLDPITGTFRYYHSPTNTVHMYPPEMAPSSAPPSTPPTHKVKPQVPAERDREPSKLKRSYSSPDITQALQEEEKRRPAVTPMVNRENKPPCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNRKRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCRRRSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVRSSAAYILFYTSLGPRITDVAT", "sequence_length": 1080, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d1f44b42f67cb8d06d3c90269bf23d5ef9911b4e0f341f6c0971a50af25c24ed", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q80U87.json", "taxon_id": "10090", "uniprot_accession": "Q80U87", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/3-4-19-ec3-4-19--.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:3.4.19.-", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/enzymatic_activity/ec/3-4-19-ec3-4-19--.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/mov34-mpn-pad-1-family-amsh-associated-molecule-with-the-src-homology--cd08066.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd08066", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/mov34-mpn-pad-1-family-amsh-associated-molecule-with-the-src-homology--cd08066.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/stambp-stalp-like-mpn-domain-ipr044098.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR044098", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/stambp-stalp-like-mpn-domain-ipr044098.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/usp8-dimerisation-domain-ipr015063.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/usp8-dimerisation-domain-ipr015063.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/usp8-dimer-pf08969.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/usp8-dimer-pf08969.yaml" } ], "pfam_ids": [ "PF01398", "PF08969" ], "protein_name": "AMSH-like ubiquitin thioesterase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSSFETIDIATSARRIGVDNRISLKFYFRIADNILKQANIFRAEKNVIDLYVMLLRFSSLALETIPSHRDYRTSLKSNKEYLRMRLLDVLTELEKLKPVVQQRIDELYPKLKPRYNVQAHPANGSLGWSSAVKPSFNSYDHAKVRNPPGHNSGYMGSRGQQFLNAAPLEERFRKMSVNFRPNEETLSKHSILGPGGLSAQWQPPKYDTKVQYPSNIDFSPVVIPSFQQLVDSKPMITNGSNDEPEKPIVEPSVASNEKIQKNYTEELSSMISFEEPESVNENNLIRQPSPPPVLAEVQDLVPALCPEVREPECMIENSLPDESLRSESPLELHIATSMMDTFMRLAKSNTKKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKQSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAPQDSSRNHGIFRLTTPGGMTVIRNCDRRGFHAHSSPEDGGPIYNTCKEVYMNPNLKFDVIDLR", "sequence_length": 507, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "89bb66f3703927b5ec8cf237efbf703f8c381ada571dbeb70c22df8787a9194d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VYB5.json", "taxon_id": "3702", "uniprot_accession": "Q8VYB5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/mov34-mpn-pad-1-family-amsh-associated-molecule-with-the-src-homology--cd08066.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd08066", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/mov34-mpn-pad-1-family-amsh-associated-molecule-with-the-src-homology--cd08066.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/stambp-stalp-like-mpn-domain-ipr044098.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR044098", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/stambp-stalp-like-mpn-domain-ipr044098.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/usp8-dimerisation-domain-ipr015063.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/usp8-dimerisation-domain-ipr015063.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/usp8-dimer-pf08969.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/usp8-dimer-pf08969.yaml" } ], "pfam_ids": [ "PF01398", "PF08969" ], "protein_name": "AMSH-like protease", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDQPFTVNSLKKLAAMPDHTDVSLSPEERVRALSKLGCNITISEDITPRRYFRSGVEMERMASVYLEEGNLENAFVLYNKFITLFVEKLPNHRDYQQCAVPEKQDIMKKLKEIAFPRTDELKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQFLFFEDQLKKQELARGQMRSQQTSGLSEQIDGSALSCFSTHQNNSLLNVFADQPNKSDATNYASHSPPVNRALTPAATLSAVQNLVVEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSACKKKGFHPHTKEPRLFSICKHVLVKDIKIIVLDLR", "sequence_length": 436, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "35076cc4b0f5d4503c0825361ef6af8868e5fc29df2b08823c254e863148028e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96FJ0.json", "taxon_id": "9606", "uniprot_accession": "Q96FJ0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/mov34-mpn-pad-1-family-amsh-associated-molecule-with-the-src-homology--cd08066.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd08066", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/mov34-mpn-pad-1-family-amsh-associated-molecule-with-the-src-homology--cd08066.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/stambp-stalp-like-mpn-domain-ipr044098.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR044098", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/stambp-stalp-like-mpn-domain-ipr044098.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/usp8-dimerisation-domain-ipr015063.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/usp8-dimerisation-domain-ipr015063.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/usp8-dimer-pf08969.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/usp8-dimer-pf08969.yaml" } ], "pfam_ids": [ "PF01398", "PF08969" ], "protein_name": "STAM-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDHGDVSLPPQDRVRILSQLGSAVELNEDIPPRRYYRSGVEIIRMASVYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAIIPEKKDAVKKLKSVAFPKAEELKTELLRRYTKEYEQYKERKKKEEEELARNIAIQQELEKEKQRVAQQKQKQLEQEQFHAFEEMIQRQELEKERLKIVQEFGKVDPGPCGPLLPDLEKPCVDVAPSSPFSPTQTPDCNTGMRPAKPPVVDRSLKPGALSVIENVPTIEGLRHIVVPRNLCSEFLQLASANTAKGIETCGVLCGKLMRNEFTITHVLIPRQNGGPDYCHTENEEEIFFMQDDLGLLTLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESIAIVCSPKFQETGFFKLTDYGLQEISTCRQKGFHPHGRDPPLFCDCSHVTVKDRIVTITDLR", "sequence_length": 424, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79a948f201b2581a0f8da85628cba60af2b83408669c4051de65968281271e42", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CQ26.json", "taxon_id": "10090", "uniprot_accession": "Q9CQ26", "uniprot_release": "2026_03" } ], "pfam_id": "PF08969", "short_name": "USP8_dimer", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08972", "short_name": "DUF1902", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF08973", "short_name": "TM1506", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1877-pf08974.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08974", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1877-pf08974.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/yfbm-like-super-family-ipr035944.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035944", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yfbm-like-super-family-ipr035944.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/yfbm-like-super-family-3-40-1760-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.1760.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yfbm-like-super-family-3-40-1760-10.yaml" } ], "pfam_ids": [ "PF08974" ], "protein_name": "Protein YfbM", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGMIGYFAEIDSEKINQLLESTEKPLMDNIHDTLSGLRRLDIDKRWDFLHFGLTGTSAFDPAKNDPLSRAVLGEHSLEDGIDGFLGLTWNQELAATIDRLESLDRNELRKQFSIKRLNEMEIYPGVTFSEELEGQLFASIMLDMEKLISAYRRMLRQGNHALTVIVG", "sequence_length": 167, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc71cacb047f61b12f80a9a7cfde24031f3003c78fc2438880f2b6f3edf4a862", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76483.json", "taxon_id": "83333", "uniprot_accession": "P76483", "uniprot_release": "2026_03" } ], "pfam_id": "PF08974", "short_name": "DUF1877", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 6", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/2h-phosphodiest-pf08975.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08975", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/2h-phosphodiest-pf08975.yaml" } ], "pfam_ids": [ "PF08975" ], "protein_name": "Uncharacterized protein 127L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDYKHKINAEGEYLPFYGYTSISMLSSNTSSVQVLQNIEQLISQTIIGKYYSPLPHTTYHMTLFNIYCMASSPIPPVQRWTLENEENKIPEKLWLSEDVLKIKHIKALDCLRKLPSHLKITNLEFYYKKGLGVWVTLDEESFNAVTKLRKEFSVIYEHDDANLKLHITFAYLFKELPFKNGTREEKKALKTELLKLVKMLNTLKLWTLTNHNIYLYNSMTNYFPIDFFFSSSLV", "sequence_length": 235, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f2a0a3061faa2595f1b5e9c9df0256fe4f4c009b15805f4d4d5ffadff7821056", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O55739.json", "taxon_id": "176652", "uniprot_accession": "O55739", "uniprot_release": "2026_03" } ], "pfam_id": "PF08975", "short_name": "2H-phosphodiest", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/djbp-ef-hand-domain-ipr015070.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015070", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/djbp-ef-hand-domain-ipr015070.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ef-hand-11-pf08976.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08976", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ef-hand-11-pf08976.yaml" } ], "pfam_ids": [ "PF08976", "PF13499" ], "protein_name": "Myosin regulatory light chain 12B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSKKAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD", "sequence_length": 172, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "955f07683a10d68d8668031b9cc9c53d99b16f0edc4b79673ea48ab98bcdde5d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O14950.json", "taxon_id": "9606", "uniprot_accession": "O14950", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/djbp-ef-hand-domain-ipr015070.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015070", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/djbp-ef-hand-domain-ipr015070.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ef-hand-11-pf08976.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08976", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ef-hand-11-pf08976.yaml" } ], "pfam_ids": [ "PF08976", "PF13499" ], "protein_name": "Myosin regulatory light chain 12A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSKRTKTKTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD", "sequence_length": 171, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e73a8d61a67a06e68d46bb494f0f4dc454a0c99c348ef6ce8a0ea8e1691a26f0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P19105.json", "taxon_id": "9606", "uniprot_accession": "P19105", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/djbp-ef-hand-domain-ipr015070.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015070", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/djbp-ef-hand-domain-ipr015070.yaml" } ], "pfam_ids": [ "PF08976", "PF13499" ], "protein_name": "Myosin regulatory light chain 12B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSKKAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD", "sequence_length": 172, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "955f07683a10d68d8668031b9cc9c53d99b16f0edc4b79673ea48ab98bcdde5d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3THE2.json", "taxon_id": "10090", "uniprot_accession": "Q3THE2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/djbp-ef-hand-domain-ipr015070.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015070", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/djbp-ef-hand-domain-ipr015070.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ef-hand-11-pf08976.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08976", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ef-hand-11-pf08976.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ef-hand-8-pf13833.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ef-hand-8-pf13833.yaml" } ], "pfam_ids": [ "PF08976", "PF13499", "PF13833" ], "protein_name": "EF-hand calcium-binding domain-containing protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCKMAIIPDWLRSHPHTRKFTHSRPHSSPCRVYSRNGSPNKFRSSSTTAVANPTLSSLDVKRILFQKITDRGDELQKAFQLLDTGQNLTVSKSELRRIITDFLMPLTREQFQDVLAQIPLSTSGTVPYLAFLSRFGGIDLYINGIKRGGGNEMNCCRTLRELEIQVGEKVFKNIKTVMKAFELIDVNKTGLVRPQELRRVLETFCMKLRDEEYEKFSKHYNIHKDTAVDYNVFLKNLSINNDLNLRYCMGNQEVSLENQQAKNSKKERLLGSASSEDIWRNYSLDEIERNFCLQLSKSYEKVEKALSAGDPCKGGYVSFNYLKIVLDTFVYQIPRRIFIQLMKRFGLKATTKINWKQFLTSFHEPQGLQVSSKGPLTKRNSINSRNESHKENIITKLFRHTEDHSASLKKALLIINTKPDGPITREEFRYILNCMAVKLSDSEFKELMQMLDPGDTGVVNTSMFIDLIEENCRMRKTSPCTDAKTPFLLAWDSVEEIVHDTITRNLQAFYNMLRSYDLGDTGRIGRNNFKKIMHVFCPFLTNAHFIKLCSKIQDIGSGRILYKKLLACIGIDGPPTVSPVLVPKDQLLSEHLQKDEQQQPDLSERTKLTEDKTTLTKKMTTEEVIEKFKKCIQQQDPAFKKRFLDFSKEPNGKINVHDFKKVLEDTGMPMDDDQYALLTTKIGFEKEGMSYLDFAAGFEDPPMRGPETTPPQPPTPSKSYVNSHFITAEECLKLFPRRLKESFRDPYSAFFKTDADRDGIINMHDLHRLLLHLLLNLKDDEFERFLGLLGLRLSVTLNFREFQNLCEKRPWRTDEAPQRLIRPKQKVADSELACEQAHQYLVTKAKNRWSDLSKNFLETDNEGNGILRRRDIKNALYGFDIPLTPREFEKLWARYDTEGKGHITYQEFLQKLGINYSPAVHRPCAEDYFNFMGHFTKPQQLQEEMKELQQSTEKAVAARDKLMDRHQDISKAFTKTDQSKTNYISICKMQEVLEECGCSLTEGELTHLLNSWGVSRHDNAINYLDFLRAVENSKSTGAQPKEKEESMPINFATLNPQEAVRKIQEVVESSQLALSTAFSALDKEDTGFVKATEFGQVLKDFCYKLTDNQYHYFLRKLRIHLTPYINWKYFLQNFSCFLEETADEWAEKMPKGPPPTSPKATADRDILARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFSSETAATPMATGDSAVAQRGSSVPDVSEGTRSALSLPTQELRPGSKSQSHPCTPASTTVIPGTPPLQNCDPIESRLRKRIQGCWRQLLKECKEKDVARQGDINASDFLALVEKFNLDISKEECQQLIIKYDLKSNGKFAYCDFIQSCVLLLKAKESSLMHRMKIQNAHKMKEAGAETPSFYSALLRIQPKIVHCWRPMRRTFKSYDEAGTGLLSVADFRTVLRQYSINLSEEEFFHILEYYDKTLSSKISYNDFLRAFLQ", "sequence_length": 1501, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9fccfe4d2c228e877fadf4af3d78a15680cd1b9bd5d6c6d1896b2f68f8971a34", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5THR3.json", "taxon_id": "9606", "uniprot_accession": "Q5THR3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/djbp-ef-hand-domain-ipr015070.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015070", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/djbp-ef-hand-domain-ipr015070.yaml" } ], "pfam_ids": [ "PF08976", "PF13202", "PF13499", "PF13833" ], "protein_name": "EF-hand calcium-binding domain-containing protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"P56277", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cmc4-pf08991.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08991", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cmc4-pf08991.yaml" } ], "pfam_ids": [ "PF08991" ], "protein_name": "Cx9C motif-containing protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPQKDPCQKQACEIQKCLQANNYMESKCQAVIEELRKCCARYPKGRSLICSGFEKEEEEKQTLKCTPQ", "sequence_length": 68, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "30f3d4192ec06ded96d2e04f9b982af89efd447a8a638aa620db87cac50bd6fa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0VBY0.json", "taxon_id": "9913", "uniprot_accession": "Q0VBY0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cmc4-pf08991.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF08991", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cmc4-pf08991.yaml" } ], "pfam_ids": [ "PF08991" ], "protein_name": "Cx9C motif-containing protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPQKDPCQKQACEIQKCLQANNYLESKCQAVIQELRKCCARYPKGRSLVCSGFEKEEEEKLAMKSGSK", "sequence_length": 68, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "62b0f8c9ade689066fc1e7a05ffbb33a31bc3bbd506788e2632ce29f5202eace", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q61908.json", "taxon_id": "10090", "uniprot_accession": "Q61908", "uniprot_release": "2026_03" } ], "pfam_id": "PF08991", "short_name": "CMC4", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1890-pf09001.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1890-pf09001.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/mth777-like-superfamily-ipr036608.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036608", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/mth777-like-superfamily-ipr036608.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/mth777-like-3-40-50-10160.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.50.10160", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/mth777-like-3-40-50-10160.yaml" } ], "pfam_ids": [ "PF09001" ], "protein_name": "Uncharacterized protein MJ0452", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMSVLVIVGCPEPPALIPSVLYLTNQLKKKGFNVIIAANPAALKLLEVADDDKYYLKGVGAVDIDGGLRGIEGINKIISFVHNDGGVSYTVTYKAKYNKPTYAIVFGRQINKDYVETLKNSNIGVYTARAFHNPMPIVNRIKEILANL", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a0340818b26d599c424556378a6bbf522e0e9aee12988e6a66ebede2e8b82f4d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57894.json", "taxon_id": "243232", "uniprot_accession": "Q57894", "uniprot_release": "2026_03" } ], "pfam_id": "PF09001", "short_name": "DUF1890", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09002", "short_name": "Card1_endonuc", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/alkbh8-n-pf09004.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09004", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/alkbh8-n-pf09004.yaml" } ], "pfam_ids": [ "PF00076", "PF08241", "PF09004", "PF13532" ], "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSNHQSNYKLSKTEKKLLRKQIKARHTLLRHEGIETVSYATQSLIVANGGLGNQVSRNQLLPVLEKCGLVDALLMPPNKPYSCVRYKTVEESKTAYDTLNGKEIVDDLGQKIILYLNFVEKAQWKELGLQALPPGLKVIEEIISSEDEKMLLESVNWTEDTENQNFQKSLKHRRVKHFGYEFHYENNNVDKDKPLPGGLPDICESILEKWLKEGFIKHKPDQLTINQYEPGHGIPAHIDTHSAFEDEIISLSLGSEIVMDFKHPDGMTVPVMLPCRSLLVMTGESRYLWTHGITPRKFDTVQASKGHKSGIITSDVEDLTLNKRGIRTSFTFRKVRQTPCNCSYPLVCDSQMKETPASFPESDKEALQLEQDYVHRVYEEIARHFSSTRHTPWPHIVEFLKALPSGSLVADIGCGNGKYLGINNELYMIGCDHSQNLVDICRERQYQAFVCDALAVPIRSGSCDACISIAVIHHFATAERRVAALQELVRLLRPGGKALIYVWAMEQEYNKKKSKYLRENRTSQGMKEEISNDASVQELLVKQLPNVGNQDSAHSVSSINDFQDGGCNSKNVANSKLPIHTNRTSFHSQDLLVPWHFKGNPGKDKRVEPFGPLGSRDPGPVFHRYYHVFCEGELEAACRTLNNISILQSYYDQGNWCVILQKV", "sequence_length": 664, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "77b77276893d5cd64190cad5492ec3333c4cbc4c0f1dcc1a8ae15806fee0c42e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1A4L5.json", "taxon_id": "9913", "uniprot_accession": "A1A4L5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/alkbh8-n-pf09004.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09004", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/alkbh8-n-pf09004.yaml" } ], "pfam_ids": [ "PF00076", "PF08241", "PF09004", "PF13532" ], "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNINHKGVLKLTKMEKKFLRKQSKARHVLLKHEGIQAVSYPTQSLVIANGGLGNGVSRKQLLLTLEKCGPVEALLMPPNKPYAFVIFQTIEESKKAYFTLNGKEIIDDLGQKIFLYLNFVEKAQWKNMGLEALPPGLLVVEEIISSEEEKKLLESVNWTEDTGNQNFQRSLKHRRVKHFGYEFHYESNTVDKDKPLPGGLPEVCSSILEKLLKEGYIKHKPDQLTINQYEPGHGIPAHIDTHSAFEDEIISLSLGSAIVMDFKHPEGVTVQVMLPRRSLLVMTGESRYLWTHGITPRKFDTVQASEQFKGGIITSDIGDLTLSKRGMRTSFTFRKVRRMPCNCSYSSVCDRQRKATPPSLTESSKEALELEQKHVHQVYNEIASHFSSTRHSPWPRIVEFLKALPSGSIVADIGCGNGKYLGINKDLYMIGCDRSQNLVDICRERQFQALVCDALAVPVRSGSCDACISIAVIHHFATAERRVEALQELARLLRPGGQALIYVWAMEQEYKNQKSKYLRGKRISQGDKDELNSATSTEEFLVNQTPEGVNEDPALSVNSSSITKEEEYKSRKVPNSELPIHINRTCFHSQDVLVPWHLKRNPGKDKAIEPSGVAGCPDPSPVFHRYYHVFCDGELEASCQAVGDVSILQSYYDQGNWCVVLQKV", "sequence_length": 664, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ed4b89ca12ae4aec7ed189f1c89ed50720e81ca831ac0de833f2ea02f67d4093", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q80Y20.json", "taxon_id": "10090", "uniprot_accession": "Q80Y20", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/alkbh8-n-pf09004.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09004", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/alkbh8-n-pf09004.yaml" } ], "pfam_ids": [ "PF00076", "PF08241", "PF09004", "PF13532" ], "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSNHQSNYKLSKTEKKFLRKQIKAKHTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDICESFLEKWLRKGYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHPDGIAVPVMLPRRSLLVMTGESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQTPCNCSYPLVCDSQRKETPPSFPESDKEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLGINKELYMIGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERRVAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLRGNRNSQGKKEEMNSDTSVQRSLVEQMRDMGSRDSASSVPRINDSQEGGCNSRQVSNSKLPVHVNRTSFYSQDVLVPWHLKGNPDKGKPVEPFGPIGSQDPSPVFHRYYHVFREGELEGACRTVSDVRILQSYYDQGNWCVILQKA", "sequence_length": 664, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cb77e0d9a3ec3698dae7d97f4a4ad0aa62d88cbac278beb3aa2ea894d90f17f2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96BT7.json", "taxon_id": "9606", "uniprot_accession": "Q96BT7", "uniprot_release": "2026_03" } ], "pfam_id": "PF09004", "short_name": "ALKBH8_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q3U0V1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00013", "PF09005" ], "protein_name": "Far upstream element-binding protein 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e0da8d1d0549721fa830784ee580e6f15368ff339b5f046df2da998847ee702a", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSDYNTGGPPPGPPPPAGGGGGAAGAGGGPPPGPPGAGDRGGGGPGGGGPGGGGASGGPSQPPGGGGPGIRKDAFADAVQRARQIAAKIGGDAATTVNNNTPDFGFGGQKRQLEDGDQPDSKKLASQGDSIGSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFGDRNEYGSRVGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSGPPGPPGAPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQLIEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAPHDPNKAAAAATDPNAAWAAYYSHYYQQPPGPVPGPAPAPAAPPAQGEPPQPPPTGQSDYTKAWEEYYKKIGQQPQQPGAPPQQDYTKAWEEYYKKQAQVATGGGPGAPPGSQPDYSAAWAEYYRQQAAYYGQTPGPGGPQPPPTQQGQQQASGNCHPPPPPFSFQPPATVHPALVGSAGNPFPCGVCP", "sequence_length": 748, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e0da8d1d0549721fa830784ee580e6f15368ff339b5f046df2da998847ee702a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3U0V1.json", "taxon_id": "10090", "uniprot_accession": "Q3U0V1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fubp-c-pf09005.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09005", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fubp-c-pf09005.yaml" } ], "pfam_ids": [ "PF00013", "PF09005" ], "protein_name": "Far upstream element-binding protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADYSTVPPPSSGSAGGGGGGVVNDAFKDALQRARQIAAKIGGDAGTSLNSNDYGYGGQKRPLEDGDQPDAKKVPPQNDSFGAQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKAGADPNSAAWAAYYAHYYQQQAQPPPAAPAGAPATTQTNGQGDQQAPAPAGQVDYTKAWEEYYKKMGQAVPAPAGAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQGFANHARSHHHLY", "sequence_length": 651, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c7df2f240374a49f7df326a9d6572d41f92371f967345aceb34ac5bee77effbe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91WJ8.json", "taxon_id": "10090", "uniprot_accession": "Q91WJ8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fubp-c-pf09005.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF09005", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fubp-c-pf09005.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q92945", "section": "protein_registry", "url": 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"MSHILRAAVLAAVLLPFPALADQAGKSPAGVRYHGGDEIILQGFHWNVVREAPNDWYNILRQQASTIAADGFSAIWMPVPWRDFSSWTDGGKSGGGEGYFWHDFNKNGRYGSDAQLRQAAGALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGGESDLNTGHPQIYGMFRDELANLRSGYGAGGFRFDFVRGYAPERVDSWMSDSADSSFCVGELWKGPSEYPSWDWRNTASWQQIIKDWSDRAKCPVFDFALKERMQNGSVADWKHGLNGNPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWSHMYDWGYGDFIRQLIQVRRTAGVRADSAISFHSGYSGLVATVSGSQQTLVVALNSDLANPGQVASGSFSEAVNASNGQVRVWRSGSGDGGGNDGGEGGLVNVNFRCDNGVTQMGDSVYAVGNVSQLGNWSPASAVRLTDTSSYPTWKGSIALPDGQNVEWKCLIRNEADATLVRQWQSGGNNQVQAAAGASTSGSF", "sequence_length": 551, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2cfa3782c7739d3f4d96723e19f8d3ebef684e5bb8d299cf2303d568d5a74b0b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P22963.json", "taxon_id": "304", "uniprot_accession": "P22963", "uniprot_release": "2026_03" } ], "pfam_id": "PF09081", "short_name": "AMT4_dom_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1922-pf09082.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09082", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1922-pf09082.yaml" } ], "pfam_ids": [ "PF09082" ], "protein_name": "Protein MTH_1184", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYIIFRCDCGRALYSREGAKTRKCVCGRTVNVKDRRIFGRADDFEEASELVRKLQEEKYGSCHFTNPSKRE", "sequence_length": 71, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bfb1517e4ee0bbb8041a0b666b7ad6f7af4b775d5dff079e604c747f937391e2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O27252.json", "taxon_id": "187420", "uniprot_accession": "O27252", "uniprot_release": "2026_03" } ], "pfam_id": "PF09082", "short_name": "DUF1922", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09083", "short_name": "DUF1923", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1924-pf09086.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09086", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1924-pf09086.yaml" } ], "pfam_ids": [ "PF09086" ], "protein_name": "Cytochrome c-type protein SHP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTRFLILSAVLAGPALAGDTSPAQLIAGYEAAAGAPADAERGRALFLSTQTGGKPDTPSCTTCHGADVTRAGQTRTGKEIAPLAPSATPDRFTDSARVEKWLGRNCNSVIGRDCTPGEKADLLAWLAAQ", "sequence_length": 129, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e317b983dac446857258e3cc642aa4d0de2197b0de42d5557a4737c8ba507638", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P81238.json", "taxon_id": "272943", "uniprot_accession": "P81238", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methylophilus methylotrophus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1924-pf09086.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09086", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1924-pf09086.yaml" } ], "pfam_ids": [ "PF09086" ], "protein_name": "Cytochrome c''", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIKTIIAVFGVLFSAHALADVTNAEKLVYKYTNIAHSANPMYEAPSITDGKIFFNRKFKTPSGKEAACASCHTNNPANVGKNIVTGKEIPPLAPRVNTKRFTDIDKVEDEFTKHCNDILGADCSPSEKANFIAYLLTETKPTK", "sequence_length": 144, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8025e22b4fe931c74eabef360a8e17aa8988d90e5118c6e37beee5c7f6994e2a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RQB9.json", "taxon_id": "17", "uniprot_accession": "Q9RQB9", "uniprot_release": "2026_03" } ], "pfam_id": "PF09086", "short_name": "DUF1924", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/amya-a-gluct-m-pf09094.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09094", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/amya-a-gluct-m-pf09094.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/amya-glutrfs-c-pf09095.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09095", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/amya-glutrfs-c-pf09095.yaml" } ], "pfam_ids": [ "PF03065", "PF09094", "PF09095" ], "protein_name": "4-alpha-glucanotransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERINFIFGIHNHQPLGNFGWVFEEAYNRSYRPFMEILEEFPEMKVNVHFSGPLLEWIEENKPDYLDLLRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEMLKDYARKLGYDAKGVWLTERVWQPELVKSLREAGIEYVVVDDYHFMSAGLSKEELFWPYYTEDGGEVITVFPIDEKLRYLIPFRPVKKTIEYLESLTSDDPSKVAVFHDDGEKFGVWPGTYEWVYEKGWLREFFDAITSNEKINLMTYSEYLSKFTPRGLVYLPIASYFEMSEWSLPAKQAKLFVEFVEQLKEEGKFEKYRVFVRGGIWKNFFFKYPESNFMHKRMLMVSKAVRDNPEARKYILKAQCNDAYWHGVFGGIYLPHLRRTVWENIIKAQRYLKPENKILDVDFDGRAEIMVENDGFIATIKPHYGGSIFELSSKRKAVNYNDVLPRRWEHYHEVPEATKPEKESEEGIASIHELGKQIPEEIRRELAYDWQLRAILQDHFIKPEETLDNYRLVKYHELGDFVNQPYEYEMIENGVKLWREGGVYAEEKIPARVEKKIELTEDGFIAKYRVLLEKPYKALFGVEINLAVHSVMEKPEEFEAKEFEVNDPYGIGKVRIELDKAAKVWKFPIKTLSQSEAGWDFIQQGVSYTMLFPIEKELEFTVRFREL", "sequence_length": 659, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f66bf09f743893fc2c9bcaa2c9df886559021f21f1fda8db7559e298c088665a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32462.json", "taxon_id": "523849", "uniprot_accession": "O32462", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/amya-a-gluct-m-pf09094.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09094", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/amya-a-gluct-m-pf09094.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/amya-glutrfs-c-pf09095.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09095", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/amya-glutrfs-c-pf09095.yaml" } ], "pfam_ids": [ "PF03065", "PF09094", "PF09095" ], "protein_name": "Alpha-amylase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKSIYFSLGIHNHQPVGNFDFVIERAYEMSYKPLINFFFKHPDFPINVHFSGFLLLWLEKNHPEYFEKLKIMAERGQIEFVSGGFYEPILPIIPDKDKVQQIKKLNKYIYDKFGQTPKGMWLAERVWEPHLVKYIAEAGIEYVVVDDAHFFSVGLKEEDLFGYYLMEEQGYKLAVFPISMKLRYLIPFADPEETITYLDKFASEDKSKIALLFDDGEKFGLWPDTYRTVYEEGWLETFVSKIKENFLLVTPVNLYTYMQRVKPKGRIYLPTASYREMMEWVLFPEAQKELEELVEKLKTENLWDKFSPYVKGGFWRNFLAKYDESNHMQKKMLYVWKKVQDSPNEEVKEKAMEEVFQGQANDAYWHGIFGGLYLPHLRTAIYEHLIKAENYLENSEIRFNIFDFDCDGNDEIIVESPFFNLYLSPNHGGSVLEWDFKTKAFNLTNVLTRRKEAYHSKLSYVTSEAQGKSIHERWTAKEEGLENILFYDNHRRVSFTEKIFESEPVLEDLWKDSSRLEVDSFYENYDYEINKDENKIRVLFSGVFRGFELCKSYILYKDKSFVDVVYEIKNVSETPISLNFGWEINLNFLAPNHPDYYFLIGDQKYPLSSFGIEKVNNWKIFSGIGIELECVLDVEASLYRYPIETVSLSEEGFERVYQGSALIHFYKVDLPVGSTWRTTIRFWVK", "sequence_length": 686, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60f9873412b238f123f7ee4a14a25222f01eb6bca1c2933a647948b41f850445", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P09961.json", "taxon_id": "309799", "uniprot_accession": "P09961", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/amya-a-gluct-m-pf09094.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09094", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/amya-a-gluct-m-pf09094.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/amya-glutrfs-c-pf09095.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09095", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/amya-glutrfs-c-pf09095.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glyco-hydro-57-pf03065.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03065", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glyco-hydro-57-pf03065.yaml" } ], "pfam_ids": [ "PF03065", "PF09094", "PF09095" ], "protein_name": "Alpha-amylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDKINFIFGIHNHQPLGNFGWVFEEAYEKCYWPFLETLEEYPNMKVAIHTSGPLIEWLQDNRPEYIDLLRSLVKRGQVEIVVAGFYEPVLASIPKEDRIEQIRLMKEWAKSIGFDARGVWLTERVWQPELVKTLKESGIDYVIVDDYHFMSAGLSKEELYWPYYTEDGGEVIAVFPIDEKLRYLIPFRPVDKVLEYLHSLIDGDESKVAVFHDDGEKFGIWPGTYEWVYEKGWLREFFDRISSDEKINLMLYTEYLEKYKPRGLVYLPIASYFEMSEWSLPAKQARLFVEFVNELKVKGIFEKYRVFVRGGIWKNFFYKYPESNYMHKRMLMVSKLVRNNPEARKYLLRAQCNDAYWHGLFGGVYLPHLRRAIWNNLIKANSYVSLGKVIRDIDYDGFEEVLIENDNFYAVFKPSYGGSLVEFSSKNRLVNYVDVLARRWEHYHGYVESQFDGVASIHELEKKIPDEIRKEVAYDKYRRFMLQDHVVPLGTTLEDFMFSRQQEIGEFPRVPYSYELLDGGIRLKREHLGIEVEKTVKLVNDGFEVEYIVNNKTGNPVLFAVELNVAVQSIMESPGVLRGKEIVVDDKYAVGKFALKFEDEMEVWKYPVKTLSQSESGWDLIQQGVSYIVPIRLEDKIRFKLKFEEASG", "sequence_length": 649, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4f8761cb76fd9e542d25a37c438a64f2c8c6d8d75884a989504f9d2c3d9541ed", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P49067.json", "taxon_id": "186497", "uniprot_accession": "P49067", "uniprot_release": "2026_03" } ], "pfam_id": "PF09094", "short_name": "AmyA-A_glucT_m", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/amya-a-gluct-m-pf09094.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09094", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/amya-a-gluct-m-pf09094.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/amya-glutrfs-c-pf09095.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09095", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/amya-glutrfs-c-pf09095.yaml" } ], "pfam_ids": [ "PF03065", "PF09094", "PF09095" ], "protein_name": "4-alpha-glucanotransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERINFIFGIHNHQPLGNFGWVFEEAYNRSYRPFMEILEEFPEMKVNVHFSGPLLEWIEENKPDYLDLLRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEMLKDYARKLGYDAKGVWLTERVWQPELVKSLREAGIEYVVVDDYHFMSAGLSKEELFWPYYTEDGGEVITVFPIDEKLRYLIPFRPVKKTIEYLESLTSDDPSKVAVFHDDGEKFGVWPGTYEWVYEKGWLREFFDAITSNEKINLMTYSEYLSKFTPRGLVYLPIASYFEMSEWSLPAKQAKLFVEFVEQLKEEGKFEKYRVFVRGGIWKNFFFKYPESNFMHKRMLMVSKAVRDNPEARKYILKAQCNDAYWHGVFGGIYLPHLRRTVWENIIKAQRYLKPENKILDVDFDGRAEIMVENDGFIATIKPHYGGSIFELSSKRKAVNYNDVLPRRWEHYHEVPEATKPEKESEEGIASIHELGKQIPEEIRRELAYDWQLRAILQDHFIKPEETLDNYRLVKYHELGDFVNQPYEYEMIENGVKLWREGGVYAEEKIPARVEKKIELTEDGFIAKYRVLLEKPYKALFGVEINLAVHSVMEKPEEFEAKEFEVNDPYGIGKVRIELDKAAKVWKFPIKTLSQSEAGWDFIQQGVSYTMLFPIEKELEFTVRFREL", "sequence_length": 659, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f66bf09f743893fc2c9bcaa2c9df886559021f21f1fda8db7559e298c088665a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32462.json", "taxon_id": "523849", "uniprot_accession": "O32462", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/amya-a-gluct-m-pf09094.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09094", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/amya-a-gluct-m-pf09094.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/amya-glutrfs-c-pf09095.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09095", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/amya-glutrfs-c-pf09095.yaml" } ], "pfam_ids": [ "PF03065", "PF09094", "PF09095" ], "protein_name": "Alpha-amylase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKSIYFSLGIHNHQPVGNFDFVIERAYEMSYKPLINFFFKHPDFPINVHFSGFLLLWLEKNHPEYFEKLKIMAERGQIEFVSGGFYEPILPIIPDKDKVQQIKKLNKYIYDKFGQTPKGMWLAERVWEPHLVKYIAEAGIEYVVVDDAHFFSVGLKEEDLFGYYLMEEQGYKLAVFPISMKLRYLIPFADPEETITYLDKFASEDKSKIALLFDDGEKFGLWPDTYRTVYEEGWLETFVSKIKENFLLVTPVNLYTYMQRVKPKGRIYLPTASYREMMEWVLFPEAQKELEELVEKLKTENLWDKFSPYVKGGFWRNFLAKYDESNHMQKKMLYVWKKVQDSPNEEVKEKAMEEVFQGQANDAYWHGIFGGLYLPHLRTAIYEHLIKAENYLENSEIRFNIFDFDCDGNDEIIVESPFFNLYLSPNHGGSVLEWDFKTKAFNLTNVLTRRKEAYHSKLSYVTSEAQGKSIHERWTAKEEGLENILFYDNHRRVSFTEKIFESEPVLEDLWKDSSRLEVDSFYENYDYEINKDENKIRVLFSGVFRGFELCKSYILYKDKSFVDVVYEIKNVSETPISLNFGWEINLNFLAPNHPDYYFLIGDQKYPLSSFGIEKVNNWKIFSGIGIELECVLDVEASLYRYPIETVSLSEEGFERVYQGSALIHFYKVDLPVGSTWRTTIRFWVK", "sequence_length": 686, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60f9873412b238f123f7ee4a14a25222f01eb6bca1c2933a647948b41f850445", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P09961.json", "taxon_id": "309799", "uniprot_accession": "P09961", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/amya-a-gluct-m-pf09094.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09094", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/amya-a-gluct-m-pf09094.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/amya-glutrfs-c-pf09095.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09095", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/amya-glutrfs-c-pf09095.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glyco-hydro-57-pf03065.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03065", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glyco-hydro-57-pf03065.yaml" } ], "pfam_ids": [ "PF03065", "PF09094", "PF09095" ], "protein_name": "Alpha-amylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDKINFIFGIHNHQPLGNFGWVFEEAYEKCYWPFLETLEEYPNMKVAIHTSGPLIEWLQDNRPEYIDLLRSLVKRGQVEIVVAGFYEPVLASIPKEDRIEQIRLMKEWAKSIGFDARGVWLTERVWQPELVKTLKESGIDYVIVDDYHFMSAGLSKEELYWPYYTEDGGEVIAVFPIDEKLRYLIPFRPVDKVLEYLHSLIDGDESKVAVFHDDGEKFGIWPGTYEWVYEKGWLREFFDRISSDEKINLMLYTEYLEKYKPRGLVYLPIASYFEMSEWSLPAKQARLFVEFVNELKVKGIFEKYRVFVRGGIWKNFFYKYPESNYMHKRMLMVSKLVRNNPEARKYLLRAQCNDAYWHGLFGGVYLPHLRRAIWNNLIKANSYVSLGKVIRDIDYDGFEEVLIENDNFYAVFKPSYGGSLVEFSSKNRLVNYVDVLARRWEHYHGYVESQFDGVASIHELEKKIPDEIRKEVAYDKYRRFMLQDHVVPLGTTLEDFMFSRQQEIGEFPRVPYSYELLDGGIRLKREHLGIEVEKTVKLVNDGFEVEYIVNNKTGNPVLFAVELNVAVQSIMESPGVLRGKEIVVDDKYAVGKFALKFEDEMEVWKYPVKTLSQSESGWDLIQQGVSYIVPIRLEDKIRFKLKFEEASG", "sequence_length": 649, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4f8761cb76fd9e542d25a37c438a64f2c8c6d8d75884a989504f9d2c3d9541ed", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P49067.json", "taxon_id": "186497", "uniprot_accession": "P49067", "uniprot_release": "2026_03" } ], "pfam_id": "PF09095", "short_name": "AmyA-gluTrfs_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas putida", "origins": [ { "cited_uniprot_accession": "B1N7H2", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/phenylethylamine-degradation-ii.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY-6534", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/phenylethylamine-degradation-ii.yaml" } ], "pfam_ids": [ "PF09098", "PF09099", "PF09100", "PF14930" ], "protein_name": "PeaA", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MAAEQGPSLLQNKCMGCHIPEGNDTYSRISHQRKTPEGWLMSIARMQVMHGLQISDDDRRTLVKYLADKQGLAPSETDGVRYAMERRLNTVEHFDTQLSETCGRCHSGARVALQRRPAKEWEHLVNFHLGQWPSLEYQAQARDRDWLPIALQQVVPELARRYPLDNPAWAEWQQAKPKADVLPGQWAFSGHMLAKGDVRGVMSVSAGEGDTFKVEVKGAYADGTPFNGSGTAILYNGYEWRGNVKVGDTNLRQVFAALDGEMKGRMFEAEHDERGLDFMAAREGKARLLAVQPAFIKAGGESEITLVGSGLDGKPDLGAGVEVTEVLEQTPTLLRVKARAAVDAKPGQREVAVGALKGVNLAVYDKVEEVKVVPAFSIARIGENGASVPKVQGRFEAEAWGKDASGQPLRIGYLPATWKVEPFNERAVEDEDVKFAGQMQADGVFVPGGAGPNPERKMMTNNAGNLKVIATLADGGQTGEGHMIVTVQRWNNPPLP", "sequence_length": 496, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "00aaaec15a42ae9e0f5a1d8451e63d01c348425ecdd5685bcc425a842a948aad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B1N7H2.json", "taxon_id": "303", "uniprot_accession": "B1N7H2", "uniprot_release": "2026_03" } ], "pfam_id": "PF09099", "short_name": "Qn_am_d_aIII", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas putida", "origins": [ { "cited_uniprot_accession": "B1N7H2", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/phenylethylamine-degradation-ii.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY-6534", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/phenylethylamine-degradation-ii.yaml" } ], "pfam_ids": [ "PF09098", "PF09099", "PF09100", "PF14930" ], "protein_name": "PeaA", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MAAEQGPSLLQNKCMGCHIPEGNDTYSRISHQRKTPEGWLMSIARMQVMHGLQISDDDRRTLVKYLADKQGLAPSETDGVRYAMERRLNTVEHFDTQLSETCGRCHSGARVALQRRPAKEWEHLVNFHLGQWPSLEYQAQARDRDWLPIALQQVVPELARRYPLDNPAWAEWQQAKPKADVLPGQWAFSGHMLAKGDVRGVMSVSAGEGDTFKVEVKGAYADGTPFNGSGTAILYNGYEWRGNVKVGDTNLRQVFAALDGEMKGRMFEAEHDERGLDFMAAREGKARLLAVQPAFIKAGGESEITLVGSGLDGKPDLGAGVEVTEVLEQTPTLLRVKARAAVDAKPGQREVAVGALKGVNLAVYDKVEEVKVVPAFSIARIGENGASVPKVQGRFEAEAWGKDASGQPLRIGYLPATWKVEPFNERAVEDEDVKFAGQMQADGVFVPGGAGPNPERKMMTNNAGNLKVIATLADGGQTGEGHMIVTVQRWNNPPLP", "sequence_length": 496, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "00aaaec15a42ae9e0f5a1d8451e63d01c348425ecdd5685bcc425a842a948aad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B1N7H2.json", "taxon_id": "303", "uniprot_accession": "B1N7H2", "uniprot_release": "2026_03" } ], "pfam_id": "PF09100", "short_name": "Qn_am_d_aIV", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Artemisia annua", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/go-like-e-set-pf09118.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/go-like-e-set-pf09118.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/glyoxal-oxid-n-pf07250.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07250", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/glyoxal-oxid-n-pf07250.yaml" } ], "pfam_ids": [ "PF07250", "PF09118" ], "protein_name": "Putative aldehyde oxidase Art an 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASSIKTVILFLLPLLLAYSVLAAPDITDGGDKPGPEIDDGGGDKPVPGNNDGASDYAKPAFEPEFMGAWVIDNPNAGVAAMQLQLMPNDQIVWFDTTSLGASGYKLPEGTPCPINPDANNQPDCYAHGIAYDWKTSKYRPLTLQGDAWCSSGNLWPNGNLMATGGTFSGDKAIRVIANDDPKGDFTTKIGALADTRWYSSNQVLPDGSSVVLGGRDSYSYEIVPPQMEFKPKRFDLPFMQQTTEPPLGPGRPVENNLYPFLFLLPDGNIFLFANNRAITFEPATGKTVKEFPVLPGGSRNYPPSGSAALFPLKLTADNAPVIPEIVICGGNQPNAYELVDARHVTEKQFLPALQDCNRIQPMAADAAWIPEQNMPSPRTMGDLIHLANGDMLMLNGAKKGTSGWEDATEANLTPVLYTPYKPMGQRFKELTPTTIARMYHSCSALLPDTRVLVAGSNMHQFYTFDTEFPTELRVEKFSPPYLDPALETERTQIDPANTDAVLKYGKPFKITAALMEKQPLVLGEVKVTLLYPPFTTHGFSQNQRMIVPAITSVQNGVITAVAPPSGQIAPPGYYIMFVSHLGIPGAGIWVHID", "sequence_length": 594, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8ace2aea14c4786d95dbe486f479bbcfaa113965c5fd221dc5f470bd1445cfe4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A2H4HHY6.json", "taxon_id": "35608", "uniprot_accession": "A0A2H4HHY6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Gibberella zeae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/go-like-e-set-pf09118.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/go-like-e-set-pf09118.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/glyoxal-oxid-n-pf07250.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07250", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/glyoxal-oxid-n-pf07250.yaml" } ], "pfam_ids": [ "PF00754", "PF01344", "PF07250", "PF09118" ], "protein_name": "Galactose oxidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKHLLTLALCFSSINAVAVTVPHKAVGTGIPEGSLQFLSLRASAPIGSAISRNNWAVTCDSAQSGNECNKAIDGNKDTFWHTFYGANGDPKPPHTYTIDMKTTQNVNGLSMLPRQDGNQNGWIGRHEVYLSSDGTNWGSPVASGSWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIAEINVFQASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQSVKVGGRITISTDSSISKASLIRYGTATHTVNTDQRRIPLTLTNNGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRVTQ", "sequence_length": 680, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a984608dd5ae7b9d83bf96e6e57716684ea43145f23c5aa89438e4dfd4f030cc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0CS93.json", "taxon_id": "5518", "uniprot_accession": "P0CS93", "uniprot_release": "2026_03" }, 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"data/traits/sequence/domain/interpro/galactose-oxidase-like-early-set-domain-ipr015202.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015202", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/galactose-oxidase-like-early-set-domain-ipr015202.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glyoxal-oxidase-n-terminal-ipr009880.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009880", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glyoxal-oxidase-n-terminal-ipr009880.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/go-like-e-set-pf09118.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/go-like-e-set-pf09118.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/galactose-oxidase-central-domain-superfamily-ipr037293.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR037293", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/galactose-oxidase-central-domain-superfamily-ipr037293.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/glyoxal-oxid-n-pf07250.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07250", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/glyoxal-oxid-n-pf07250.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/galactose-oxidase-kelch-beta-propeller-2-130-10-80.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.130.10.80", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/galactose-oxidase-kelch-beta-propeller-2-130-10-80.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9FYG4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07250", "PF09118" ], "protein_name": "Aldehyde oxidase GLOX1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c2436a9cf42522004d880c0d48699081dacc427aa574b3ed8c05c0744e8fb52d", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKKSTRLLWLLSIIVLVAAVSKAVAEVDNDDDDDNTSLEGMTTAKRETLEVEDHTSLEGMVKREALEVKPPKAGKGKGKGKGRGTVAAGPEMNWPGQWELFMKNSGVSAMHAILMPLINKVQFYDATIWRISQIKLPPGVPCHVFDAKKNKVDCWAHSVLVDINTGDIKPLALTTDTWCSSGGLTVNGTLVSTGGFQGGANTARYLSTCENCVWIEYPKALAARRWYSTQATLPDGTFIVVGGRDALNYEYILPEGQNNKKLYDSQLLRQTDDPEENNLYPFVWLNTDGNLFIFANNRSILLSPKTNKVLKEFPQLPGGARNYPGSASSALLPIRLYVQNPAIIPADVLVCGGAKQDAYFRAERLKIYDWALKDCARLNINSAKPVWKTETMPTSRVMSDTVILPNGEILIINGAKRGSSGWHLAKEPNFAPLLYKPNKPLGQRFKELAPSTIPRVYHSIAIALPDGKVLVGGSNTNNGYQFNVEYPTELRIEKFSPPYLDPALANMRPRIVNTATPKQIKYGQMFDVKIELKQQNVAKENVMVTMLAPSFTTHSVSMNMRLLMLGINNVKNVGGDNHQIQAVAPPSGKLAPPGYYLLFAVYNGVPSVGEWIQIV", "sequence_length": 615, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c2436a9cf42522004d880c0d48699081dacc427aa574b3ed8c05c0744e8fb52d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FYG4.json", "taxon_id": "3702", "uniprot_accession": "Q9FYG4", "uniprot_release": "2026_03" } ], "pfam_id": "PF09118", "short_name": "GO-like_E_set", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09122", "short_name": "DUF1930", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aquifex aeolicus (strain VF5)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1931-pf09123.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09123", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1931-pf09123.yaml" } ], "pfam_ids": [ "PF09123" ], "protein_name": "Uncharacterized protein aq_328", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQEKYNFGKVSSQHKNYSKIETMLRPKGFDKLDHYFRTELDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNITKALEEHIKNFQKIEQDMGVDELLEYIAFIPPVEMNVGEDLKSEYRNIMGGLLLMHADVIKKATGERKPSREAMEFVAQIVDKVF", "sequence_length": 171, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "84e44d39a4f54ffc7d959c1c27aac8e9fae683981afcbbf1e3c83d8ee8fd19cf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O66665.json", "taxon_id": "224324", "uniprot_accession": "O66665", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aquifex aeolicus (strain VF5)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1931-pf09123.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09123", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1931-pf09123.yaml" } ], "pfam_ids": [ "PF09123" ], "protein_name": "Uncharacterized protein aq_616", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRLKKLPIRRKMPMELAYIEKLFREEVGLDIKEHKDKAEQISETVVEIYEELLRKGIENANYNGRDYVSYYDLPITEDLERYMNRFIQDRGEEVLKAFVDYLAKLEEELLKAEEALPPLDEELHQKKADILGGIMLMFASVAKQINGDRKLYAESIPVTREVLRTMI", "sequence_length": 167, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a1294138a532855c31c64f35dc39c04b01e406aaf44e8f7d860c9477276af538", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O66868.json", "taxon_id": "224324", "uniprot_accession": "O66868", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/first-histone-fold-domain-found-in-aquifex-aeolicus-protein-aq328-and--cd22922.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22922", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/first-histone-fold-domain-found-in-aquifex-aeolicus-protein-aq328-and--cd22922.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/second-histone-fold-domain-found-in-aquifex-aeolicus-protein-aq328-and-cd22923.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22923", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/second-histone-fold-domain-found-in-aquifex-aeolicus-protein-aq328-and-cd22923.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1931-pf09123.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09123", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1931-pf09123.yaml" } ], "pfam_ids": [ "PF09123" ], "protein_name": "Uncharacterized protein MJ1509", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEMIIPYPQLKKIMKTTCEIDLYKTEAEDIMDVVEKKLADLFEVAHRNAKEENAKIIKMRHIPLTKGFLNSMELFRSVIEEENIVAETIKKYVMKKIPGDLPLDDIVVDNLPLITGTIFIVVGRVIKALHEDIERIRKEHIEEAKKVLDYTL", "sequence_length": 153, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1352ad4ec894bb8e4852030d769f6eee45a0bf36631a0beb0854a717969a200c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58904.json", "taxon_id": "243232", "uniprot_accession": "Q58904", "uniprot_release": "2026_03" } ], "pfam_id": "PF09123", "short_name": "DUF1931", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanothermus fervidus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1932-pf09130.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09130", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1932-pf09130.yaml" } ], "pfam_ids": [ "PF03807", "PF09130" ], "protein_name": "Uncharacterized 28.5 kDa protein in 7S RNA 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRIGFIGFGEVSSTLSQFFKDKVEVQTCVKGRSEKTKKIAKKLGVKIYKDYKDLVKNSDIVISAVTPFSALDVAKKYGKYVKGIYVDVNNVSPLTKHKILKYIDEEKFVDCAIIGRIKRKFKMICSGKNANKLKILEKFGVPIEVIGSKVGEASTLKMLRSLYTKSLAAILLEVFSVANKLGLIDELLEILEETEGKKFVDLCKSRVVGSFIHSRRRYEEICEIEKFILSHNLKPIMIKCTKNMFKHIEEC", "sequence_length": 251, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f78b9d6f37dbd912a536a192c8aa9963a0699b7cce418a1b12d842c5c33663b3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P21336.json", "taxon_id": "2180", "uniprot_accession": "P21336", "uniprot_release": "2026_03" } ], "pfam_id": "PF09130", "short_name": "DUF1932", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pectobacterium carotovorum subsp. carotovorum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cara-n-pf09147.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cara-n-pf09147.yaml" } ], "pfam_ids": [ "PF00733", "PF09147" ], "protein_name": "Carbapenam-3-carboxylate synthase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNSFCVVYKGSDTDINNIQRDFDGKGEALSNGYLFIEQNGHYQKCEMERGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTRLGANALALAEGDFCFFIDEPNGELTVITESRGFSPVHVVQGKKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPVKNAQRLKPGAVHVLTHDSEGYSFVESRTLTTPASNQLLALPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALASRHFKKLNTYSIGTELSNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSGLFNVYRQAQGQVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQVYRTRWTGEFATHGASCYGIDIRHPFWSHSLISLCHALHPDYKIFDNEVKNILREYADSLQLLPKDIVWRKKIGIHEGSSVNQAFANVLGSTVDNYQTKSRFTYRVYQAFLRGRLSITDVTPSQLKDLIKKD", "sequence_length": 503, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "92570c6c8a05f00426a103c63d99cb1047c1efd6d621e277a47423fe61720824", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9XB61.json", "taxon_id": "555", "uniprot_accession": "Q9XB61", "uniprot_release": "2026_03" } ], "pfam_id": "PF09147", "short_name": "CarA_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1934-pf09148.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09148", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1934-pf09148.yaml" } ], "pfam_ids": [ "PF09148" ], "protein_name": "Uncharacterized beta-barrel protein YwiB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKQETPITLHVKSVIEDDGNQEVIEFRTTGFYYVKQNKVYLSYYEEHDLGKVKTIVKVSEGEVLVMRSGAVKMNQRFVTGASTIAKYKMSFGELELKTSTKSIQSDLDEEKGRISIAYDMHVGDEQEHLHNMTITYEGGTHA", "sequence_length": 142, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "421562e60da3533f8c41a2c1f6efe9218d50d7235ed62252e93653bf16e2b5c3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O07624.json", "taxon_id": "224308", "uniprot_accession": "O07624", "uniprot_release": "2026_03" } ], "pfam_id": "PF09148", "short_name": "DUF1934", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09149", "short_name": "DUF1935", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09151", "short_name": "DUF1936", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09152", "short_name": "DUF1937", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09153", "short_name": "MGMT_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus licheniformis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/alpha-amy-c-pro-pf09154.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09154", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/alpha-amy-c-pro-pf09154.yaml" }, { "cited_uniprot_accession": "P06278", "commit": "62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "TraitMech", "path": "data/traits/metabolism/starch_degradation.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "traitmech:000115", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/TraitMech/blob/62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b/data/traits/metabolism/starch_degradation.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P06278", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00128", "PF09154" ], "protein_name": "Alpha-amylase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3a41a1454d2cb3ccc2697dcf23755155e1e61755fd5b243dc6ee31d4b7730d09", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKQQKRLYARLLTLLFALIFLLPHSAAAAANLNGTLMQYFEWYMPNDGQHWKRLQNDSAYLAEHGITAVWIPPAYKGTSQADVGYGAYDLYDLGEFHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADATEDVTAVEVDPADRNRVISGEHRIKAWTHFHFPGRGSTYSDFKWHWYHFDGTDWDESRKLNRIYKFQGKAWDWEVSNENGNYDYLMYADIDYDHPDVAAEIKRWGTWYANELQLDGFRLDAVKHIKFSFLRDWVNHVREKTGKEMFTVAEYWQNDLGALENYLNKTNFNHSVFDVPLHYQFHAASTQGGGYDMRKLLNSTVVSKHPLKAVTFVDNHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTKGDSQREIPALKHKIEPILKARKQYAYGAQHDYFDHHDIVGWTREGDSSVANSGLAALITDGPGGAKRMYVGRQNAGETWHDITGNRSEPVVINSEGWGEFHVNGGSVSIYVQR", "sequence_length": 512, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3a41a1454d2cb3ccc2697dcf23755155e1e61755fd5b243dc6ee31d4b7730d09", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P06278.json", "taxon_id": "1402", "uniprot_accession": "P06278", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Geobacillus stearothermophilus", "origins": [ { "cited_uniprot_accession": "", "commit": 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"MQPGSSRCEEETPSLLWGLDPVFLAFAKLYIRDILDMKESRQVPGVFLYNGHPIKQVDVLGTVIGVRERDAFYSYGVDDSTGVINCICWKKLNTESVSAAPSAARELSLTSQLKKLQETIEQKTKIEIGDTIRVRGSIRTYREEREIHATTYYKVDDPVWNIQIARMLELPTIYRKVYDQPFHSSALEKEEALSNPGALDLPSLTSLLSEKAKEFLMENRVQSFYQQELEMVESLLSLANQPVIHSASSDQVNFKKDTTSKAIHSIFKNAIQLLQEKGLVFQKDDGFDNLYYVTREDKDLHRKIHRIIQQDCQKPNHMEKGCHFLHILACARLSIRPGLSEAVLQQVLELLEDQSDIVSTMEHYYTAF", "sequence_length": 368, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "87d3a846376d8bfc54734b4a4be04add7c99003c0bf066d4d917c77b90fdf59e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H668.json", "taxon_id": "9606", "uniprot_accession": "Q9H668", "uniprot_release": "2026_03" } ], "pfam_id": "PF09170", "short_name": "STN1_2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/agog-pf09171.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09171", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/agog-pf09171.yaml" } ], "pfam_ids": [ "PF09171" ], "protein_name": "N-glycosylase/DNA lyase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNLEKINELLEIFGHFDVNFAKTMEEKIDTQYFVLENLKNSMNNDEMFIKLVILNSIVSYQLCTTGELWWEEFSKYWSKHDANNENLGESYVNFLENSKGNKRLLNVKIKRIERITPFLENLNLLDFKTYYSDMEKLLENLSKYLNSKKNSKTVVFAVKMFGYASRIVFNEFFPYPMNIEIPKDSRIEKYTLKFTDENPIKFWNEVSKTAKIPPLHIDSIIWPVLGRNFDFKSCENKLDENFRYLLKLTEL", "sequence_length": 252, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "055f8ccbb2fa6fc977f0450b441731bfd4ecb13d49f7ce0eb3e5930d2fe61995", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6M0G7.json", "taxon_id": "267377", "uniprot_accession": "Q6M0G7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/agog-pf09171.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09171", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/agog-pf09171.yaml" } ], "pfam_ids": [ "PF09171" ], "protein_name": "N-glycosylase/DNA lyase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAESQLKRVIETLRRLGIEEVLKLERRDPQYRAVCNVVKRHGETVGSRLAMLNALISYRLTGKGEEHWEYFGKYFSQLEVIDLCRDFLKYIETSPFLKIGVEARKKRALKACDYVPNLEDLGLTLRQLSHIVGARREQKTLVFTIKILNYAYMCSRGVNRVLPFDIPIPVDYRVARLTWCAGLIDFPPEEALRRYEAVQKIWDAVARETGIPPLHLDTLLWLAGRAVLYGENLHGVPKEVIALFQWRGGCRPPSE", "sequence_length": 256, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5397f2de2e75f2b50bca44cfc65e3c15302e183fb09bb74fd36ac10c22d33c8b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8ZVK6.json", "taxon_id": "178306", "uniprot_accession": "Q8ZVK6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/agog-pf09171.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09171", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/agog-pf09171.yaml" } ], "pfam_ids": [ "PF09171" ], "protein_name": "N-glycosylase/DNA lyase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQRVRWERVERVAEAFSRLSIGEVLGFEEQVDPQYKLVSRLAGEIGAGKAALSALLVGLASYRLAMRGEEWWLCFYRHMRSSLPRAEGLRGVLRAVEGFLTSCSGAAIGREAKLRRVRRAASAAEVLGEVLDNPLVLVERPSEVLEALRVALGEKGFRKTTVFSVKIAYYAVRPLAGRKPLTLDVPIPVDVRVACASISSEMVEAPSYREVVARPEAAQRAWGRVARSSGIPVLHIDSILWVTGWAPRELPPGEAREAVAGILSRALDRGKAVLLASELVRRPCPGG", "sequence_length": 288, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95c4f40f48d0106d699ba379ea9b9f50706c2f4364366b698a8550397c305cab", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9YE60.json", "taxon_id": "272557", "uniprot_accession": "Q9YE60", "uniprot_release": "2026_03" } ], "pfam_id": "PF09171", "short_name": "AGOG", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 10, "discovery_scanned": true, "example_count": 10, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/apob100-c-pf12491.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12491", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/apob100-c-pf12491.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-vitellogenin-pf01347.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01347", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-vitellogenin-pf01347.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vit-open-b-sht-pf09172.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vit-open-b-sht-pf09172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:E9Q414", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01347", "PF06448", "PF09172", "PF12491", "PF29934", "PF30406", "PF30433", "PF30435", "PF30436", "PF30444", "PF30454", "PF30460" ], "protein_name": "Apolipoprotein B-100", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a0d76291bcc3fd2eacda4e6cfdb56aa90c5de34e8aea539cb824d38d5844594c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGPRKPALRTPLLLLFLLLFLDTSVWAQDEVLENLSFSCPKDATRFKHLRKYVYNYEAESSSGVQGTADSRSATKINCKVELEVPQICGFIMRTNQCTLKEVYGFNPEGKALMKKTKNSEEFAAAMSRYELKLAIPEGKQIVLYPDKDEPKYILNIKRGIISALLVPPETEEDQQELFLDTVYGNCSTQVTVNSRKGTVPTEMSTERNLQQCDGFQPISTSVSPLALIKGLVHPLSTLISSSQTCQYTLDPKRKHVSEAVCDEQHLFLPFSYKNKYGIMTRVTQKLSLEDTPKINSRFFSEGTNRMGLAFESTKSTSSPKQADAVLKTLQELKKLSISEQNAQRANLFNKLVTELRGLTGEAITSLLPQLIEVSSPITLQALVQCGQPQCYTHILQWLKTEKAHPLLVDIVTYLMALIPNPSTQRLQEIFNTAKEQQSRATLYALSHAVNSYFDVDHSRSPVLQDIAGYLLKQIDNECTGNEDHTFLILRVIGNMGRTMEQVMPALKSSVLSCVRSTKPSLLIQKAALQALRKMELEDEVRTILFDTFVNGVAPVEKRLAAYLLLMKNPSSSDINKIAQLLQWEQSEQVKNFVASHIANILNSEELYVQDLKVLIKNALENSQFPTIMDFRKFSRNYQISKSASLPMFDPVSVKIEGNLIFDPSSYLPRESLLKTTLTVFGLASLDLFEIGLEGKGFEPTLEALFGKQGFFPDSVNKALYWVNGRVPDGVSKVLVDHFGYTTDGKHEQDMVNGIMPIVDKLIKDLKSKEIPEARAYLRILGKELSFVRLQDLQVLGKLLLSGAQTLQGIPQMVVQAIREGSKNDLFLHYIFMDNAFELPTGAGLQLQVSSSGVFTPGIKAGVRLELANIQAELVAKPSVSLEFVTNMGIIIPDFAKSSVQMNTNFFHESGLEARVALKAGQLKVIIPSPKRPVKLFSGSNTLHLVSTTKTEVIPPLVENRQSWSTCKPLFTGMNYCTTGAYSNASSTESASYYPLTGDTRYELELRPTGEVEQYSATATYELLKEDKSLVDTLKFLVQAEGVQQSEATVLFKYNRRSRTLSSEVLIPGFDVNFGTILRVNDESAKDKNTYKLILDIQNKKITEVSLVGHLSYDKKGDGKIKGVVSIPRLQAEARSEVHTHWSSTKLLFQMDSSATAYGSTISKRVTWRYDNEIIEFDWNTGTNVDTKKVASNFPVDLSHYPRMLHEYANGLLDHRVPQTDVTFRDMGSKLIVATNTWLQMATRGLPYPQTLQDHLNSLSELNLLKMGLSDFHIPDNLFLKTDGRVKYTMNRNKINIDIPLPLGGKSSKDLKMPESVRTPALNFKSVGFHLPSREVQVPTFTIPKTHQLQVPLLGVLDLSTNVYSNLYNWSASYTGGNTSRDHFSLQAQYRMKTDSVVDLFSYSVQGSGETTYDSKNTFTLSCDGSLHHKFLDSKFKVSHVEKFGNSPVSKGLLTFETSSALGPQMSATVHLDSKKKQHLYVKDIKVDGQFRASSFYAQGKYGLSCERDVTTGQLSGESNMRFNSTYFQGTNQIVGMYQDGALSITSTSDLQDGIFKNTASLKYENYELTLKSDSSGQYENFAASNKLDVTFSTQSALLRSEHQANYKSLRLVTLLSGSLTSQGVELNADILGTDKINTGAHKATLKIARDGLSTSATTNLKYSPLLLENELNAELGLSGASMKLSTNGRFKEHHAKFSLDGRAALTEVSLGSIYQAMILGADSKNIFNFKLSREGLRLSNDLMGSYAEMKLDHTHSLNIAGLSLDFFSKMDNIYSGDKFYKQNFNLQLQPYSFITTLSNDLRYGALDLTNNGRFRLEPLKLNVGGNFKGTYQNNELKHIYTISYTDLVVASYRADTVAKVQGVEFSHRLNADIEGLTSSVDVTTSYNSDPLHFNNVFHFSLAPFTLGIDTHTSGDGKLSFWGEHTGQLYSKFLLKAEPLALIVSHDYKGSTSHSLPYESSISTALEHTVSALLTPAEQTSTWKFKTKLNDKVYSQDFEAYNTKDKIGVELSGRADLSGLYSPIKLPFFYSEPVNVLNGLEVNDAVDKPQEFTIIAVVKYDKNQDVHTINLPFFKSLPDYLERNRRGMISLLEAMRGELQRLSVDQFVRKYRAALSRLPQQIHHYLNASDWERQVAGAKEKITSFMENYRITDNDVLIAIDSAKINFNEKLSQLETYAIQFDQYIKDNYDPHDLKRTIAEIIDRIIEKLKILDEQYHIRVNLAKSIHNLYLFVENVDLNQVSSSNTSWIQNVDSNYQVRIQIQEKLQQLRTQIQNIDIQQLAAEVKRQMDAIDVTMHLDQLRTAILFQRISDIIDRVKYFVMNLIEDFKVTEKINTFRVIVRELIEKYEVDQHIQVLMDKSVELAHRYSLSEPLQKLSNVLQRIEIKDYYEKLVGFIDDTVEWLKALSFKNTIEELNRLTDMLVKKLKAFDYHQFVDKTNSKIREMTQRINAEIQALKLPQKMEALKLLVEDFKTTVSNSLERLKDTKVTVVIDWLQDILTQMKDHFQDTLEDVRDRIYQMDIQRELEHFLSLVNQVYSTLVTYMSDWWTLTAKNITDFAEQYSIQNWAESIKVLVEQGFIVPEMQTFLWTMPAFEVSLRALQEGNFQTPVFIVPLTDLRIPSIRINFKMLKNIKIPLRFSTPEFTLLNTFHVHSFTIDLLEIKAKIIRTIDQILSSELQWPLPEMYLRDLDVVNIPLARLTLPDFHVPEITIPEFTIPNVNLKDLHVPDLHIPEFQLPHLSHTIEIPAFGKLHSILKIQSPLFILDANANIQNVTTSGNKAEIVASVTAKGESQFEALNFDFQAQAQFLELNPHPPVLKESMNFSSKHVRMEHEGEIVFDGKAIEGKSDTVASLHTEKNEVEFNNGMTVKVNNQLTLDSHTKYFHKLSVPRLDFSSKASLNNEIKTLLEAGHVALTSSGTGSWNWACPNFSDEGIHSSQISFTVDGPIAFVGLSNNINGKHLRVIQKLTYESGFLNYSKFEVESKVESQHVGSSILTANGRALLKDAKAEMTGEHNANLNGKVIGTLKNSLFFSAQPFEITASTNNEGNLKVGFPLKLTGKIDFLNNYALFLSPRAQQASWQASTRFNQYKYNQNFSAINNEHNIEASIGMNGDANLDFLNIPLTIPEINLPYTEFKTPLLKDFSIWEETGLKEFLKTTKQSFDLSVKAQYKKNSDKHSIVVPLGMFYEFILNNVNSWDRKFEKVRNNALHFLTTSYNEAKIKVDKYKTENSLNQPSGTFQNHGYTIPVVNIEVSPFAVETLASSHVIPTAISTPSVTIPGPNIMVPSYKLVLPPLELPVFHGPGNLFKFFLPDFKGFNTIDNIYIPAMGNFTYDFSFKSSVITLNTNAGLYNQSDIVAHFLSSSSFVTDALQYKLEGTSRLMRKRGLKLATAVSLTNKFVKGSHDSTISLTKKNMEASVRTTANLHAPIFSMNFKQELNGNTKSKPTVSSSIELNYDFNSSKLHSTATGGIDHKFSLESLTSYFSIESFTKGNIKSSFLSQEYSGSVANEANVYLNSKGTRSSVRLQGASKVDGIWNVEVGENFAGEATLQRIYTTWEHNMKNHLQVYSYFFTKGKQTCRATLELSPWTMSTLLQVHVSQLSSLLDLHHFDQEVILKANTKNQKISWKGGVQVESRVLQHNAQFSNDQEEIRLDLAGSLDGQLWDLEAIFLPVYGKSLQELLQMDGKRQYLQASTSLLYTKNPNGYLLSLPVQELADRFIIPGIKLNDFSGVKIYKKLSTSPFALNLTMLPKVKFPGIDLLTQYSTPEGSSVPIFEATIPEIHLTVSQFTLPKSLPVGNTVFDLNKLANMIADVDLPSVTLPEQTIVIPPLEFSVPAGIFIPFFGELTARAGMASPLYNVTWSAGWKTKADHVETFLDSMCTSTLQFLEYALKVVETHKIEEDLLTYNIKGTLQHCDFNVEYNEDGLFKGLWDWQGEAHLDITSPALTDFHLYYKEDKTSLSASAASSTIGTVGLDSSTDDQSVELNVYFHPQSPPEKKLSIFKTEWRYKESDGERYIKINWEEEAASRLLGSLKSNVPKASKAIYDYANKYHLEYVSSELRKSLQVNAEHARRMVDEMNMSFQRVARDTYQNLYEEMLAQKSLSIPENLKKRVLDSIVHVTQKYHMAVMWLMDSFIHFLKFNRVQFPGYAGTYTVDELYTIVMKETKKSLSQLFNGLGNLLSYVQNQVEKSRLINDITFKCPFFSKPCKLKDLILIFREELNILSNIGQQDIKFTTILSSLQGFLERVLDIIEEQIKCLKDNESTCVADHINMVFKIQVPYAFKSLREDIYFVLGEFNDFLQSILQEGSYKLQQVHQYMKALREEYFDPSMVGWTVKYYEIEENMVELIKTLLVSFRDVYSEYSVTAADFASKMSTQVEQFVSRDIREYLSMLTDINGKWMEKIAELSIVAKETMKSWVTAVAKIMSDYPQQFHSNLQDFSDQLSSYYEKFVGESTRLIDLSIQNYHVFLRYITELLRKLQVATANNVSPYIKLAQGELMITF", "sequence_length": 4505, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a0d76291bcc3fd2eacda4e6cfdb56aa90c5de34e8aea539cb824d38d5844594c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E9Q414.json", "taxon_id": "10090", "uniprot_accession": "E9Q414", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/apob100-c-pf12491.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12491", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/apob100-c-pf12491.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1081-pf06448.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06448", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1081-pf06448.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-vitellogenin-pf01347.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01347", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-vitellogenin-pf01347.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vit-open-b-sht-pf09172.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vit-open-b-sht-pf09172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P04114", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01347", "PF06448", "PF09172", "PF12491", "PF29934", "PF30406", "PF30433", "PF30435", "PF30436", "PF30444", "PF30454", "PF30460" ], "protein_name": "Apolipoprotein B-100", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "42c5671fe8a847d69d0364a6f98bcfb87eda71d009976fc6470f9dcd0fc489d3", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDPPRPALLALLALPALLLLLLAGARAEEEMLENVSLVCPKDATRFKHLRKYTYNYEAESSSGVPGTADSRSATRINCKVELEVPQLCSFILKTSQCTLKEVYGFNPEGKALLKKTKNSEEFAAAMSRYELKLAIPEGKQVFLYPEKDEPTYILNIKRGIISALLVPPETEEAKQVLFLDTVYGNCSTHFTVKTRKGNVATEISTERDLGQCDRFKPIRTGISPLALIKGMTRPLSTLISSSQSCQYTLDAKRKHVAEAICKEQHLFLPFSYKNKYGMVAQVTQTLKLEDTPKINSRFFGEGTKKMGLAFESTKSTSPPKQAEAVLKTLQELKKLTISEQNIQRANLFNKLVTELRGLSDEAVTSLLPQLIEVSSPITLQALVQCGQPQCSTHILQWLKRVHANPLLIDVVTYLVALIPEPSAQQLREIFNMARDQRSRATLYALSHAVNNYHKTNPTGTQELLDIANYLMEQIQDDCTGDEDYTYLILRVIGNMGQTMEQLTPELKSSILKCVQSTKPSLMIQKAAIQALRKMEPKDKDQEVLLQTFLDDASPGDKRLAAYLMLMRSPSQADINKIVQILPWEQNEQVKNFVASHIANILNSEELDIQDLKKLVKEALKESQLPTVMDFRKFSRNYQLYKSVSLPSLDPASAKIEGNLIFDPNNYLPKESMLKTTLTAFGFASADLIEIGLEGKGFEPTLEALFGKQGFFPDSVNKALYWVNGQVPDGVSKVLVDHFGYTKDDKHEQDMVNGIMLSVEKLIKDLKSKEVPEARAYLRILGEELGFASLHDLQLLGKLLLMGARTLQGIPQMIGEVIRKGSKNDFFLHYIFMENAFELPTGAGLQLQISSSGVIAPGAKAGVKLEVANMQAELVAKPSVSVEFVTNMGIIIPDFARSGVQMNTNFFHESGLEAHVALKAGKLKFIIPSPKRPVKLLSGGNTLHLVSTTKTEVIPPLIENRQSWSVCKQVFPGLNYCTSGAYSNASSTDSASYYPLTGDTRLELELRPTGEIEQYSVSATYELQREDRALVDTLKFVTQAEGAKQTEATMTFKYNRQSMTLSSEVQIPDFDVDLGTILRVNDESTEGKTSYRLTLDIQNKKITEVALMGHLSCDTKEERKIKGVISIPRLQAEARSEILAHWSPAKLLLQMDSSATAYGSTVSKRVAWHYDEEKIEFEWNTGTNVDTKKMTSNFPVDLSDYPKSLHMYANRLLDHRVPQTDMTFRHVGSKLIVAMSSWLQKASGSLPYTQTLQDHLNSLKEFNLQNMGLPDFHIPENLFLKSDGRVKYTLNKNSLKIEIPLPFGGKSSRDLKMLETVRTPALHFKSVGFHLPSREFQVPTFTIPKLYQLQVPLLGVLDLSTNVYSNLYNWSASYSGGNTSTDHFSLRARYHMKADSVVDLLSYNVQGSGETTYDHKNTFTLSCDGSLRHKFLDSNIKFSHVEKLGNNPVSKGLLIFDASSSWGPQMSASVHLDSKKKQHLFVKEVKIDGQFRVSSFYAKGTYGLSCQRDPNTGRLNGESNLRFNSSYLQGTNQITGRYEDGTLSLTSTSDLQSGIIKNTASLKYENYELTLKSDTNGKYKNFATSNKMDMTFSKQNALLRSEYQADYESLRFFSLLSGSLNSHGLELNADILGTDKINSGAHKATLRIGQDGISTSATTNLKCSLLVLENELNAELGLSGASMKLTTNGRFREHNAKFSLDGKAALTELSLGSAYQAMILGVDSKNIFNFKVSQEGLKLSNDMMGSYAEMKFDHTNSLNIAGLSLDFSSKLDNIYSSDKFYKQTVNLQLQPYSLVTTLNSDLKYNALDLTNNGKLRLEPLKLHVAGNLKGAYQNNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNTDIAGLASAIDMSTNYNSDSLHFSNVFRSVMAPFTMTIDAHTNGNGKLALWGEHTGQLYSKFLLKAEPLAFTFSHDYKGSTSHHLVSRKSISAALEHKVSALLTPAEQTGTWKLKTQFNNNEYSQDLDAYNTKDKIGVELTGRTLADLTLLDSPIKVPLLLSEPINIIDALEMRDAVEKPQEFTIVAFVKYDKNQDVHSINLPFFETLQEYFERNRQTIIVVLENVQRNLKHINIDQFVRKYRAALGKLPQQANDYLNSFNWERQVSHAKEKLTALTKKYRITENDIQIALDDAKINFNEKLSQLQTYMIQFDQYIKDSYDLHDLKIAIANIIDEIIEKLKSLDEHYHIRVNLVKTIHDLHLFIENIDFNKSGSSTASWIQNVDTKYQIRIQIQEKLQQLKRHIQNIDIQHLAGKLKQHIEAIDVRVLLDQLGTTISFERINDILEHVKHFVINLIGDFEVAEKINAFRAKVHELIERYEVDQQIQVLMDKLVELAHQYKLKETIQKLSNVLQQVKIKDYFEKLVGFIDDAVKKLNELSFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALKLFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLEDTRDRMYQMDIQQELQRYLSLVGQVYSTLVTYISDWWTLAAKNLTDFAEQYSIQDWAKRMKALVEQGFTVPEIKTILGTMPAFEVSLQALQKATFQTPDFIVPLTDLRIPSVQINFKDLKNIKIPSRFSTPEFTILNTFHIPSFTIDFVEMKVKIIRTIDQMLNSELQWPVPDIYLRDLKVEDIPLARITLPDFRLPEIAIPEFIIPTLNLNDFQVPDLHIPEFQLPHISHTIEVPTFGKLYSILKIQSPLFTLDANADIGNGTTSANEAGIAASITAKGESKLEVLNFDFQANAQLSNPKINPLALKESVKFSSKYLRTEHGSEMLFFGNAIEGKSNTVASLHTEKNTLELSNGVIVKINNQLTLDSNTKYFHKLNIPKLDFSSQADLRNEIKTLLKAGHIAWTSSGKGSWKWACPRFSDEGTHESQISFTIEGPLTSFGLSNKINSKHLRVNQNLVYESGSLNFSKLEIQSQVDSQHVGHSVLTAKGMALFGEGKAEFTGRHDAHLNGKVIGTLKNSLFFSAQPFEITASTNNEGNLKVRFPLRLTGKIDFLNNYALFLSPSAQQASWQVSARFNQYKYNQNFSAGNNENIMEAHVGINGEANLDFLNIPLTIPEMRLPYTIITTPPLKDFSLWEKTGLKEFLKTTKQSFDLSVKAQYKKNKHRHSITNPLAVLCEFISQSIKSFDRHFEKNRNNALDFVTKSYNETKIKFDKYKAEKSHDELPRTFQIPGYTVPVVNVEVSPFTIEMSAFGYVFPKAVSMPSFSILGSDVRVPSYTLILPSLELPVLHVPRNLKLSLPDFKELCTISHIFIPAMGNITYDFSFKSSVITLNTNAELFNQSDIVAHLLSSSSSVIDALQYKLEGTTRLTRKRGLKLATALSLSNKFVEGSHNSTVSLTTKNMEVSVATTTKAQIPILRMNFKQELNGNTKSKPTVSSSMEFKYDFNSSMLYSTAKGAVDHKLSLESLTSYFSIESSTKGDVKGSVLSREYSGTIASEANTYLNSKSTRSSVKLQGTSKIDDIWNLEVKENFAGEATLQRIYSLWEHSTKNHLQLEGLFFTNGEHTSKATLELSPWQMSALVQVHASQPSSFHDFPDLGQEVALNANTKNQKIRWKNEVRIHSGSFQSQVELSNDQEKAHLDIAGSLEGHLRFLKNIILPVYDKSLWDFLKLDVTTSIGRRQHLRVSTAFVYTKNPNGYSFSIPVKVLADKFIIPGLKLNDLNSVLVMPTFHVPFTDLQVPSCKLDFREIQIYKKLRTSSFALNLPTLPEVKFPEVDVLTKYSQPEDSLIPFFEITVPESQLTVSQFTLPKSVSDGIAALDLNAVANKIADFELPTIIVPEQTIEIPSIKFSVPAGIVIPSFQALTARFEVDSPVYNATWSASLKNKADYVETVLDSTCSSTVQFLEYELNVLGTHKIEDGTLASKTKGTFAHRDFSAEYEEDGKYEGLQEWEGKAHLNIKSPAFTDLHLRYQKDKKGISTSAASPAVGTVGMDMDEDDDFSKWNFYYSPQSSPDKKLTIFKTELRVRESDEETQIKVNWEEEAASGLLTSLKDNVPKATGVLYDYVNKYHWEHTGLTLREVSSKLRRNLQNNAEWVYQGAIRQIDDIDVRFQKAASGTTGTYQEWKDKAQNLYQELLTQEGQASFQGLKDNVFDGLVRVTQEFHMKVKHLIDSLIDFLNFPRFQFPGKPGIYTREELCTMFIREVGTVLSQVYSKVHNGSEILFSYFQDLVITLPFELRKHKLIDVISMYRELLKDLSKEAQEVFKAIQSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLINYIQDEINTIFSDYIPYVFKLLKENLCLNLHKFNEFIQNELQEASQELQQIHQYIMALREEYFDPSIVGWTVKYYELEEKIVSLIKNLLVALKDFHSEYIVSASNFTSQLSSQVEQFLHRNIQEYLSILTDPDGKGKEKIAELSATAQEIIKSQAIATKKIISDYHQQFRYKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYITELLKKLQSTTVMNPYMKLAPGELTIIL", "sequence_length": 4563, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "42c5671fe8a847d69d0364a6f98bcfb87eda71d009976fc6470f9dcd0fc489d3", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P04114.json", "taxon_id": "9606", "uniprot_accession": "P04114", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vit-open-b-sht-pf09172.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vit-open-b-sht-pf09172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P05690", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00094", "PF01347", "PF09172", "PF29934" ], "protein_name": "Vitellogenin-2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "dafa0a22b298d93ed2e57e75abf79be9bb7fb34970f73be7e09a34b54d16b481", "sequence_version": 5, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRSIIIASLVALALASSPAFERTFEPKTDYHYKFDGLVLSGLPSASSELSQSRISARARIQAVDDRYIHLQLVNIRMAASHLPESEQMPSLNSMEQRELSEEYKQMLELPLRAQLRNGLISELQFDKEDAEWSKNMKRAVVNMISFNPIAPRNEIEKIESSYDKEEQSEENTSFFTNEKTLEGDCQVAYTVIREQKKTIITKSINFDKCTERSEIAYGLRYSSECPECEKDTELIRPQTVYTYVLENEELKESEVRSLYTVNVNGQEVMKTETRSKLVLEENHSIKSHIKKVNGEKESIIYSSRWEQLVEDFFKNGDKAEFAPFEKFPLDKKMHLIKTITEQIQEVENNMPETSHFLARLVRIFRTTSTSQLKEIHETLYVKADKKIQSLMEHALAIAGTKNTIQHILVHMENEDILPLGQILKTIQETPFPSQSIAEALIKFAESRVAKNNLVVRQAAWLAAGSVVRGIVDYKNIRPLVREDKRELKEKFLRVFMQQYKDAETTYEKILALKTIGNAGLDISVNQLNEIIVDKRQPLPVRKEAIDALRLLKDTMPRKIQKVLLPIYKNRQYEPEIRMLALWRMMHTRPEESLLVQVVSQMEKETNQQVAALTHQMIRHFAMSTNPCYQRVAIVCSKVLSFTRYQPQEQMIASSYAQLPLFLQNSFSGAQFDFAAIFEKNSFLPKDLHASLDAVFGGNWNKYFAQIGFSQQHMDKYVQMALEKLESLEKESTTVVRGRRIQTGIKLLKELAQKMNIRARPATYTEKDAFAMVYLRYKDMDYAFLPIDRQLVENLIEKFTSNGKVQFSEIRRLLNQELEFETHHAAYFYEAIRKFPTTLGLPLTISGKIPTVISAEGQFSLELEGTELRLTVEARPSVAATHVYEMRMFTPLFEQGVKSVQSVRAYTPIKIQAVAGMKRNFEIVYKVVVPENQKSIVSLTTRPVVFLRFPGFSKFEYIEAEERTVVVPQWQQKTQEIEKVFNFLGLEVSTRGNILNQHTLENWLLAEQDFEVSVENKNRPAEFTARLTVGQLEKTELSQIKYNKIFEKEFELEQENTESRREYFNKMVKNIQKEQGYKSVISLKLEAPRDYTMNTELTTVCDKQVRMCQWEVEIRRSPILEETKEWTLRSQLLVVRPEMPSSLRQLRDQPHREVQLSLTSTWGSQKKSEVTVNAQLQQSKEQKKYERNMDRQFNGMPEYELLIKAARLNQINAVAEYKLTRETEQVLARYFDLVKTYNYWTVSSRPENNENDRVVVQLTVEPMSRQYVNITMQSPMERIELKNVQVPRVYLPSIAQRSVKHQLTEASGSVCKVQKNQIRTFDDVLYNTPLTTCYSLIAKDCSEEPTFAVLSKKTEKNSEEMIIKVIRGEQEIVAQLQNEEIRVKVDGKKIQSEDYSAYQIERLGESAIVIELPEGEVRFDGYTIKTQLPSYSRKNQLCGLCGNNDDESTNEFYTSDNTETEDIEEFHRSYLLKNEECEAEEERLSEKKNYRKYERDEEQSDEYSSEETYDYEQENTKKSQKNQRSQKKSDLVEKTQIKEFSHRICFSVEPVAECRRGYEVEQQQQRKIRFTCLQRHNRDASRLLKESRQQPLQLDDYPVSFVESVKVPTACVAY", "sequence_length": 1613, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "dafa0a22b298d93ed2e57e75abf79be9bb7fb34970f73be7e09a34b54d16b481", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/P05690.json", "taxon_id": "6239", "uniprot_accession": "P05690", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vit-open-b-sht-pf09172.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vit-open-b-sht-pf09172.yaml" } ], "pfam_ids": [ "PF00094", "PF01347", "PF09172", "PF29934" ], "protein_name": "Vitellogenin-5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSIIIASLVALAIAASPALDRTFSPKSEYVYKFDGLLLSGLPTASSDASQTLISCRTRLQAVDDRYIHLQLTDIQYSASHIPQSEQWPKIESLEQRELSDEFKELLELPFRAQIRNGLISEIQFSSEDAEWSKNAKRSILNLFSLRKSAPVDEMNQDQKDMESDKDSLFFNVHEKTMEGDCEVAYTIVQEGEKTIYTKSVNFDKCITRPETAYGLRFGSECKECEKEGQFVKPQTVYTYTFKNEKLQESEVHSVYTLNVNGQEVVKSETRAKVTFVEESKINREIKKVSGPKEEIVYSMENEKLIEQFYQQGDKAEVNPFKAIEMEQKVEQLQEIFRQIQEHEQNTPETVHLIARAVRMFRMCTIEELKKVHTTIYTKAEKKVQLVIETTLAVAGTKNTIQHLIHHFEKKSITPLRAAELLKSVQETLYPSEHIADLLIQLAQSPLSEKYEPLRQSAWLAAGSVVRGFASKTQDLPLIRPASRQTKEKYVRVFMQHFRNADSTYEKVLALKTLGNAGIDLSVYELVQIIQDPRQPLSIRTEAVDALRLLKDVMPRKIQKVLLPVYKNRQNKPELRMAALWRMMHTIPEEPVLAHIVSQMENESNQHVAAFTYNVLRQFYKSTNPCYQQLAVRCSKILLFTRYQPQEQMLSTYSQLPLFNSEWLSGVQFDFATIFEKNAFLPKEVQASFETVFGGNWNKYFAQVGFSQQNFEQVILKTLEKLSLYGKQSDELRSRRVQSGIQMLQEIVKKMNIRPRVQQTDSQNAHAVFYLRYKEMDYIVLPIDMETIDTLVEKYVRNGEFDIKSLLTFLTNDSKFELHRALFFYEAERRIPTTIGMPLTISGKMPTILSINGKVSIELEKLGARLVLDIVPTVATTHVTEMRFWYPVIEQGVKSLQSARLHTPLRFESTVELKKNTLEITHKFVVPENKKTTVSVHTRPVAFIRVPKNQDSEYVEAEEKTISHSQYQMSTEEIDRQYETFGLRINAQGNVLSQWTLPMVLMTEQDFEYTLENKNRPVEFTARVTIGNLEKTDLSEIKFDKIFEKEFDLENNESENRRQYFHKMIREIQSEQGFKNLITLKLEAPQQMYWNTELRTVCDKWIRMCKVEMDARRSPMEHENKEWTLRTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRNIEREYKGIPEYELLIKAARLNQVNVVSEYKLTPQSEYTFSRIFDLIKAYNFWTVSEKRVQNENRRVVLQLSVEPLSRQYMNMTIQTPEQEVELKNVRIPRVVLPTIARSAMFQQTWEKTGATCKVDQSEVSTFDNVIYRAPLTTCYSLVAKDCSEQPRFAVLAKKINKNSEELLVKVVRREEEIVVKKSDDKFLVKVDGKKVNPTELEQYNIEILGDNLIVIRLPQGEVRFDGYTVKTNMPSVASQNQLCGLCGNNDGERDNEFMTADNYETEDVEEFHRSYLLKNEECEVENDRISEKKNYRNKWNREEKKSDYESSSDYESNYDEKETEKELVKKTLIKEFSNRVCFSIEPVSECRRGLESEKTSNKKIRFTCMPRHSKNARRFLKEAREQTVAELVDFPVSFVESVKIPTACVAY", "sequence_length": 1603, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "25a23dff8005a6b178d2c008323172aff965d56c5fadd52159a9a7d1e6630c2d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P06125.json", "taxon_id": "6239", "uniprot_accession": "P06125", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vit-open-b-sht-pf09172.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vit-open-b-sht-pf09172.yaml" } ], "pfam_ids": [ "PF00094", "PF01347", "PF09172", "PF29934" ], "protein_name": "Vitellogenin-4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSIIIASLVALAIAASPALDRTFSPKSEYVYKFDGLLLSGLPTTFSDASQTLISCRTRLQAVDDRYIHLQLIDIQYSASHIPQSEQWPKIESLEQRELSDELKELLELPFRAQIRNGLVSEIQFSSEDAEWSKNAKRSILNLFSLRKSAPVDEMSQDQKDMESDKDSLFFNVHEKTMEGDCEVAYTIVQEGGKTIYTKSVNFDKCITRPETAYGLRFGSECKECEKEGQFVQPQTVYTYTFKNEKLQESEVNSIYTLNVNGQEVVKSETRAKVTFVEESKINREIKKVSGPKEEIVYSMENEKLIEQFYKQGDKAEVNPFKAIEIEQKVEQLEEIFRQIQEHEQNTPETVHLIARAVRMFRMCTIEELKKVHTTIYTKAEKKVQLVIETTLAVAGTKNTIQHLIHHFEKKSITPLRAAELLKSVQETLYPSEHIADLLIQLAQSPLSEKYEPLRQSAWLAAGSVVRGFASKTQDLPLIRPASRQTKEKYVRVFMQHFRNADSTYEKVLALKTLGNAGIDLSVYELVQLIQDPRQPLSIRTEAVDALRLLKDVMPRKIQKVLLPVYKNRQNKPELRMAALWRMMHTIPEEPVLAHIVSQMENESNQHVAAFTYNVLRQFSKSTNPCYQQLAVRCSKVLLFTRYQPQEQMLSTYSQLPLFNSEWLSGVQFDFATIFEKNAFLPKEVQASFETVFGGNWNKYFAQVGFSQQNFEQVILKTLEKLSLYGKQSDELRSRRVQSGIQMLQEIVKKMNIRPRVQQTDSQNAHAVFYLRYKEMDYIVLPIDMETIDNVVEKYVRNGEFDIKSLLTFLTNDSKFELHRALFFYEAERRIPTTIGMPLTISGKMPTILSINGKVSIELEKLGARLVLDIVPTVATTHVTEMRFWYPVIEQGVKSLQSARLHTPLRFESTVELKKNTLEITHKFVVPENKKTTVSVHTRPVAFIRVPKNQDSEYVEAEEKTISHSQYQMSTEEIDRQYETFGLRINAQGNVLSQWTLPMVLMTEQDFEFTLENKNRPVEFTARVTIGNLEKTDLSEIKFDKIFEKEFDLENNESENRRQYFHKMIREIQSEQGFKNLITLKLEAPQQMYWNTELRTVCDKWIRMCKVEMDARRSPIEHENKEWTLRTELLAARPQMPSSLRQLREQPHREVQLALNAKWGSSKKSEITFNAQLEQSTEQKKFLRNIEREYKGIPEYELLIKAARLNQVNVVSEYKLTPESEYTFSRIFDLIKAYNFWTVSEKRVQNEDRRVVLQLSVEPLSRQYMNMTIQTPEQEVELKNVRIPRVVLPTIARRAMFQQTWEKTGATCKVDQSEVSTFDNVIYRAPLTTCYSLVAKDCSEQPRFAVLAKKINKNSEELLVKVVRREEEIVVKKSDDKFLVKVDGKKVNPTELEQYNIEILGDNLIVIRLPHGEVRFDGYTVKTNMPSVASQNQLCGLCGNNDGERDNEFMTADNYETEDVEEFHRSYLLKNEECEVEKDRISEKKNYKNKWNREEKKSDYESSSDYESNYDEKETEKELVKKTLIKEFSNRVCFSIEPVSECRRGLESEKTSNKKIRFTCMPRHSKNARRFLKEAREQTVADLVDFPVSFVESVKIPTACVAY", "sequence_length": 1603, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "49ca71b6c0069e8feda7e6334fb904d2b03338ef1eb7d77490551897be808507", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P18947.json", "taxon_id": "6239", "uniprot_accession": "P18947", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vit-open-b-sht-pf09172.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vit-open-b-sht-pf09172.yaml" } ], "pfam_ids": [ "PF00094", "PF01347", "PF09172", "PF29934" ], "protein_name": "Vitellogenin-6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFFIALALLGAALASTHLDRYNSIERNIQESSFRAGREYRYLFNGQLSAGLPVPSTPQGISRLQSQVTLQWTDGNTVRMQLQKTRFATSQQESNSMKMLPFERFEEVERMNREHQELLSMPVEFDYEHGLVREIRFAENDQPWSENIKRAVINMLQVNILKKEKYEGAEKSDNQEPTFSFTNVERTLEGECEVLYTVEEIKKEDEQRWAKSINFDKCTRRPYIHHVQTPVCKDCQQTLEQDKMSSTVLNYNITGTSSSFLINSVELRSQHLFAPISEKHQLVSAFTLNTMELIYAGEKKTEIKQVRNEKTSELVYNQESEWAEQQWAQTGEEKYLRQLPQWTENKVEMIKKMFSLMAKQIEQGEAELEAAHTVARIVKVLRECNEEQLEQIYRHVAEHKDEKIAEQLRSIYFNTLALAGTRVTIQQFVDKVQSRKNIAPLKASVAIKTLVDMRYPSLAIAEDIARLCESDVSSSFPALRQSCWLTYGAIVNGVCGQTPRVFVQKNGVKMCPRDAKQRIVDKLVQQFESASTRYEKVLALKTLANAGLDLSVYPLEKIILNEQHETTIRTQAIESFRRLRTQMPTKIQRVLMPVYLNRQQPQHIRMSALHQIIYTQPEWSVLSQIGNQLRQERNQQVRAFTLSLLRSYANNESPCEQTFSSRVQSLLNNIPFSSQEIDRFESVYGKWSTYSRRHQSGFEANFASLFTTESVLPTEMMASIEGVLSGEWNQYFAQIGFTQKNMEKIIKKLLSNVQEKGLEQIVVRGKRASGSFQPTEFLSNLLEKLRITRRQSSEQDPHAFVYIRHRDMDYAFLPIDADSIPEVVRSMIQGGRLEIGDIERVLAQGIHFSASNAAFLYETVRRVPTPMGLPVQFTSKMPTISSIRGQVTFELEPKNGKSFDGLRLRVQAGPRVASTHVLSLRVICPIAEVGTKFLHQAVLNTPVDTEIRMNWEDKVVIRAIYNTPSEEKRIAMIQSRPVTFTRTVAPDARQYPEPIEMTYMLPAHKQLSQSLDREYPQIRVQGTLNRPTSVRIPQWIVDSNVEVYYKPNVEQYEAIFELNLYNNYKMEKNYEKVYKKHNGRRYLEAEPEYDEEEHREQITKKFEWLQNEKVYQHVAKFEIKPEVVKMEVEAVCNNDFHFCKTQIRGEELKATIQYVYPQTPRTVEELKEQKYRQLVVMGEMNYGENTIHININGQQSQEQKKFVKQIEQAPEHETLLEASRLDQYQTVVEYEFEPKPAQYFARYWNMVQAYLRTQYPWTSRIETREEPSRKNMIRATINVEPRQRLTVNMTIETPMETTVLERVELPFRLPTAQIHYQPRNSRYEQKPVMEKIAHHASKQANCVVKSTKINTFDQVAYRNQFTPCYSVLAKDCGSEKSEPRFVVLMKKINEKKEWKNVKVVYGENEIEMYKTEEGLICRVNGEEIEYQPESEIEKKQYNIIWLNKNTLKFDSDDVTVQFDGVNARIHLSALYRNQQCGLCGHYDNEKETEFYDAENQENTIPKFAKSYLYKDSKCNYEREMFEKEENFQRIEKNQEEEKDQEMNYEESRREQDDEPTEQVAIVERQHEICFTQKPVLRCQNGKSQESKKQKVTSVYCLPSSNSWARRQMREIRREPLAQWPEHKLRNLRDQPQMEERTVRVAVDQKCDKFDY", "sequence_length": 1651, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "796a9f67ab0eef1031769156269ed48bd4abb5ac41735d376687a8e010bcb55c", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/P18948.json", "taxon_id": "6239", "uniprot_accession": "P18948", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vit-open-b-sht-pf09172.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vit-open-b-sht-pf09172.yaml" } ], "pfam_ids": [ "PF00094", "PF01347", "PF09172", "PF29934" ], "protein_name": "Vitellogenin-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSIIIASIVALAIAFSPAFERTFEPKIDYHYKFDGLVLSGLPTASSELSQSRFSARVRIQAVDDRHIHLQLVNIHMAASHLPESEQIPSLNSMEQRELSEEYKQMLKLPLRAQLRNGLIAELQFDKEDAEWSKNMKRAVVNMISFNPIAPRNEIEKIESSYDKEEQSEENTSFFTNEKTLEGDCQVAYTVIREQKKTIITKSINFDKCTERSEIAYGLRYSSECPECEKDTVLIRPQTVYTYILENEELKESEVRSLYTVNVNGQEVMKTETRSKLVLEENHSIKSHIEKVNGEKESIIYSSRWEQLVEDFFKNGDKAEFAPFEKFPLDKKMHLIKTITEQIQEVENNIPETSHFLARLVRIFRTTSTSQLKEIHETLYVKADKKIQSLMEHALAIAGTKNTIQHILVHIENEDIVPLEAAQLLKSIQETPFPSQTIAEALIKFAESRVSKNNQVVRQSAWLAAGSVVRGIVDYKNIRPLVREDKRELKEKFLRVFMQQYKDAETTYEKILALKSIGNAGLDISVNQLNEIIVDKRQLLPVRKEAIDALRLLKDTMPRKIQKVLLPIYKNRQYEPEIRMLALWRMMHTRPEESLLVQVVSQMEKETNQQVAALTHQMIRHFAKSTNPCYQRVAIVCSKVLSFTRYQPQEQMIASSYAQLPLFLQNSFSGAQFDFAAIFEKNSFLLKDLHASLDAVFGGNWNKYFAQIGFSQQHMDKYVQMALEKLESIEKESTTVVRGRRIQTGITLLKELALKMNIRARPANYNEKDAFAMVYLRYKDMDYAILPVDTQLIEKLIEKYISNGKVQFSEIRRLLNQEHEFETHHAAYFYEAIRKFPTTLGLPLIVSGKIPTVFSAEGQFSLGLEETELRLTVEARPSVAATHVYEMRMFTPLFEQGVKSVQSVRAYTPIKIQAVVGMKRNFEIVYKVVVPENQKSIISLTTRPVVFLRFPGFSKFEYIEAEERTVVVPQWQQKTQEIEKVFNFLGLEVSTRGNILNQHTLENWLLAEQDFEVSVENKYRPAEFTARLTVGQLEKTELSQIKYNKIFEKEFELEQENTESRREYFTKMVKSIQKEQGYKSVVSLRLEAPRDYTMNTEVTTVCDKQVRMCQWEVEIRRSPILEETKEWTLRSQLLVVRPEMPSSLRQLHDQPHREVQLSLTSTWGSQKKSEVTVNAQLQQSKEQKKYERNMDRHFNGMPEYELLIKAARLNQINAVAEYKLTRETEQVLARYFDLVKAYNYWTVSSRPENNENDRVVVQLTVEPMSRQYVNITMQSPIERVELKNVQVPRVYLPSIAQRSVKHLLNEASGSVCKVQKNQIRTFDDVLYNTPLTTCYSLIAKDCSEEPTFAVLSKKTEKNSEEMIIKVIRGEQEIVAQLQNEEIRVKVDGKKILSEDYSAHQIERLGESDIVIELPEGEVRFDGYTIKTQLPSYSRKNQLCGLCGNNDDESTNEFYTSDNTETKDIEEFHRSYLLKNEECEAEEERLSEKKNYRKYDERKYESEEYSFEETYDYEQENTNKKQKNQRSQKKSDLVEKTQIKEFSHRICFSVEPVAECRRRGYEAVEQQQRKVRFTCLPRHSSEARRLVKEARQGTVQLDDHKISFVHSVQVPVACVAY", "sequence_length": 1616, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a4fc5d6b86e73b28672c848bd1b3086830b25a4c9321005f113399ed8ac9e38e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P55155.json", "taxon_id": "6239", "uniprot_accession": "P55155", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q6ZTK2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00094", "PF01347", "PF09172", "PF21013", "PF29934" ], "protein_name": "Protein APOLTP", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "44be66403b2d2dc10c9240458d6013c836865780063f8b342c811bfa55d4d35e", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPAPVGLLGLVLLWPLMAVTAEKIPDSQVGQVASCMTACTGSAGPHLPVGTRYTYHFSTNTSTSLQDVLVEGSGLGLQGLAVLDVLGLCQMALWLQDFQVTSILGAKVELLKESESLSATLGRNPLRFILHSGRVAHLCPHPTEPRWVLNVKRAVLSLLQGHPGAHSPKTFDEVDILGRCPTTYQHHGDWLHKTKDLARCSLRRGRSSLHSQALPGVAPGLTSRLTCVQSFRAGVLREASCTELDSAGPLPAKASAVQMRTLSSLSLLHEMPQDPAGTDPDDRDDEDMTPSSLLYEWEETPSQAMVATAATLVRRLCLAQTTSLEAMDLFLTLVSQLQGLSGGELMELWQYSSFKCRDNGQPLLDALPSCGTEHCVGLMKELIASAAVEADEVEAWLSSLAFLPQPTDAMVHMLLPLLQTPRASPGAFLGISALVHNLCASLDGPCGQLPGVGSLVRILGDALGENCTIQEPSDDDKLQLVLKAVGNAGLAAMALTPTLSACASLRSSTPEIRLGAIQAFRRVPCSADRSVLSRLYQSLEEDAEIRINAYLALMRCPSEEVFAQVRRTQAGELSTQVGSFVWSHILQLLETHDPLKRALRDTLPEDILSQEFHPEMWKHSSYSDVTFRSVSGSLGANLEGTLLFSPASFLPRSATVNLTIHTMGRAFNLLELGLRLENAEEIAHRLFGRKSFWGQEDGREPEPEEPPGPEPGPAPQPASPECPGDRDRRMRYLQQKVTRRRGARQALRCELSVKLLGQELSFVNCGATGSHVNHWPLNLAELAIKLMKGQEVQMNRRLSLAAQELVFPTVSGLPARLTLNASAAISIRVRGTTDFQQRSDFSVNGYVKPSALLQISAQMGTAGILGQAGLRWVTSVRSAASLDGGIQVQKGRVLKVHLNTPEEAVELLSFSSQLYLITRDGVRSLRHVPGPSEVQSCTGEEVSYTWGWRLCTGVTWPVPGQPYLLSLPVFAAVTLQKRDPGLRQYLLEAAYTLQPQKGSWFPQEATAHVFMGTPGSEVLRDVGVDMSYSLPQNKFRLKLLHPKKKIELDGKMEALGSAHTGHLELVLDDRDVYYIKGWSDLQPAMGGEAERFQAQLEVKLVTGGSPVVFTGNLTRQVGSKLAFSASLSHLLSDQANVTALLERKEENGRRVAALGAELFVPGLVGLRALGLLQQRGQLWTNSLRIQYSLLGQAKQAAHECSTSQKLRADSGSDGAYRLELRHELHCTQILAFSHKVQLWHEEDSGHLHSQLEVSYGKHWDKNSNKRHLRVSQTFKNDSGPALSNHFMEFVLQVPERQVDCRVQLYHLSLRLPYVESSSHLKVQYNGRPLFVAGGQWKDTSRATLWKWEGALNLDSPWLMVSAAHRLYWPHRAVFQAVLELTLGKAWTLKDLVVSVGCRSQGPNREGKIQVYTAATTYLRVSTVTVLAQSLFHSWSELESAWNAAVQGEIHAENSRDRKILNCWLKGPQQELNLTAAYRHLEWPRKTQVSLTAVRIGAQGQPRGLQLEGELEELRQDRTLYRKRGALLLRHPLHLPIPQSLLLQETFTADRRHQRYSLETRVVLNGREETLQTMVLGCQAGHPYVCAGLMHPYDGKVIPRNTEGCLVTWNQHTAKNREVEATLKVHRKVVLHLKGLHHDRSQHGEIRHSLALDLAHSYQLSFPQALSLDGGIIFRQSPQGTFNFGMDARAAVNHNVTSQASVQLNGSDSDFAFFFQLRHPHGPTFPPNFQVQAAAGRYRVRSLNGSLSVQMSGRELVLLEVDASQDTRRSSRGWGVSVLLHQAVLSAPRAVRLQLSAKITPARIWLFSKALLDQNTAQLLLKASEEWRGGRILTFQSQTRHTVAGWAAMPRLLTLTGRLKQKETLQEGTLSVTADSAVLGFLLRDQHEKAGNGTSVRSVTCVLAQNSSQALPGELQLKGRLQAQTRNLRAQASIRAHAASLALGGACSWGPRHGQLAGGPTHNISTLSDAGLPSEAGMLLSLTHVASNCSARLALWNAGAQLDGAIGLEDVTPESSGLQLHASLRHTHTMPSLKHWGLPFSLDGHGHFQSVGRSLAAGLTVILDGEQLRAALERKAEGGRQGLVLGLHHGLSGLQGTLPSQLEVNCSGDASPTQLLGWCRGDIAGQPLEVSVDIHNGSSGFEHSGRILMGPTFLNYSVSCYYHDGHLELSGRSWHNSEALLWAGFPGEACLSAELQIHETQTQARVALHGGDSGVSMDLAALVARPRRGPLQLVASASHTVPALQRLGLPFTNQLVFQGLWEAEEMSSSLQLTCDSQATLVLDVRGQNQAVSKELLFSGRHRLPFLLGLCPSSASASAKLHYSKGEVQSMFALGVEERHFHISTRQVAAKAGLNNFIKLEQTFLQLSALPRELFLQTAYERAHGTRVLRQVVLWDGQEVALTGSLSGPFPKPTRNLSLQVELTHPLPLPLPRHCSLRLSSEHLGGSHRDGLVVGWDGRDQVLVSSSLWLGKSELAARLALAHPFNLPWRQAEASGLAESRGGRQSRQVQLTWNRGQPATLQLTWADGSLAHSTAWDGCLAASPGQLQETWGLNSLQACGAFTQTPAVFVEQLNVSWGQHRMRQNLTYERHWPSQPDKIIMEATLEHVLGASCTRQSFWGEVQTDYARWLRHSLHLGLCDLPRALLVVGEHTLGQGGLLLRSRCHLGLAPDPDHGLHLSLTLQNHSRPRSADFSGALELRGSKAQRVGLLGRVSTSTSQSLVRLEGSVDNREEKVRLSVFRAPSCLQASVAHEEGGREESVVLRACAHGRTAEAEVLFRDGRQPSQPLGRLTLQAANQSLLLAARGCQGGLLGHVESRIAAVGSQVQARLEEKVQGLGASVRRFQQLVQPAGTLDGVAGLLLQLSQAGREAMQASGWAVATLWARSQALTQHLPLYLEWLQVGLEQLREELEWPLATLKDAYLEVTLRPLEEVWRERAEEAMRRLQAWVPGMPGKGGPRPIRAALGAMKGALELAAQQMLSWAEATFSRALKRLCKPLLDLYSLSARNRSVVVMLPLLPAGDEPLDVARVTSYLMEEKLLRPLRELSGANVLAEYYWLRRRLLAGPWEYHALVAGAQHVVTFDGRVWDLSTQCGSILLAQDFAHNTFSLTLSRTGSGLTALFVELNHKTLILYPSLQAYRLYNSSLPGDSCPDLKLHPATTRKDVSRIELASEDGVSVSCDVPTGLCSLTLGLWQHGISAGLLGTNDNEAGNELMLPDGSMARSLEELSLAWQVGGDCRATEKPQQEQACPGQLPACWAFFEGPHSSLRDCFRVVDPTPFLSLCVQVPCGTQELQPACNLAAAYIHLCARGFVPLAPPPQCV", "sequence_length": 3320, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "44be66403b2d2dc10c9240458d6013c836865780063f8b342c811bfa55d4d35e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZTK2.json", "taxon_id": "9606", "uniprot_accession": "Q6ZTK2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/apob100-c-pf12491.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12491", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/apob100-c-pf12491.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1081-pf06448.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06448", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1081-pf06448.yaml" } ], "pfam_ids": [ "PF00134", "PF01347", "PF06448", "PF09172", "PF12491", "PF29934", "PF30406", "PF30433", "PF30435", "PF30436", "PF30444", "PF30454", "PF30460" ], "protein_name": "Apolipoprotein B-100", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGPQRPALRAPLLLLFLLLFLDTSVWAQDATRFKHLRKYVYSYEAESSSGVRGTADSRSATKINCKVELEVPQVCTLIMRTSQCTLKEVYGFNPEGKALMKKTKNSEEFASAMSRYELKLAFPEGKRVALYPDLGEPNYILNIKRGIISALLVPPETEEDKQVLFQDTVYGNCSTQVTVNSRKGTVATEMSTERNLQHCDGFQPISTSVSPLALIKGLVRPLSTLISSSQSCQYTLEPKRKHVSEAICNEQHLFLPFSYKNKYGIMTHVTQKLSLEDTPKINSRFFRGGINQVGLAFESTKSTSPPKQADAVLKTLQELKKLSISEQNAQRANLFHKLVTELRGLSGEAITSLLPQLIEVSSPITLQALIQCGQPECYTHILQWLKTEKAHPLLIDIVTYLMALIPNPSVQRLQEIFNTAKELQSRATLYALSHAVNSYYAIMDHSRSPVLEDIAGYLMKQIDNECMGDEDRTFLILRVIGNMGRTMERVMPALKSSVLNCVRSTKPSLQIQKAALQALRKMEMGDEVRTILFDTFVNDVAPVEKRLAAYLLLMRSPSSSDINKIAKLLQWEQSEQVKNFVASHIANILNSEELYVQDLKNLIKNALVNSRLPTIMDFRKFSRNYQISKSVSIPLFDPVSAKIEGNLVFDPSSYLPKESMLKTTLTVFGIASLDLFEIGLEGKGFEPTLEALFGKQGFFPDSVNKALYWVNGQVPDRVSKVLVDHFGYTKDDKHEQDMVNGIMPIVDKLIKELKSKEIPEARAYLRILGKELGFVRLQDLQVLGKLLLNGAQTFRGVPQMIVQAIREGSKDDLFLHYIFMENAFELPTGVGLQLQVSSSGVFTPGIKAGVRLELANIQAELVAKPSVSLEFVTNMGIIIPDFAKSGVQMNTNFFHESGLEARVALKAGQLKVIIPSPKRPVKLFSGSNTLHLVSTTKTEVIPPLIENRKSWSTCKPFFTGMNYCTTGAYSNASSTESASYYPLTGDTRYELELKPTGEVEQYSASATYELLKEDKSLVDTLKFLVQAEGVQQSEATAMFKYNRRSRTLSSEVLIPGFDVNFGTILRVNDESSKDKNTYKLILDIQNKKITEVSVVGHVSYDKKGDGKVKGVVSIPRLQAEARSEVHTHWSPTKLLFQMDSSATAYGSTISKRVAWRYDNEKIEFDWNTGTNVDTKKVASNFPVDLSRYPRMVHEYANGLLDHRVPQTDMTFRHMGSKLIVDHLNGLSELNLPKVGLPDFHIPDNLFLKTDGRVKYTLNKNRIEIDIPLPLGGKSSKDLKVPESVRTPALNFKSVGFHLPSQEVQIPTFTIPKTHQLQVPLLGILDLSTNVYSNLYNWSVSYTGGNTSRDHFSLQAQYRMKADSVVDLFSYSVQGSGETTYDSKSTFTLSCDGSLHHKFLDSKFKVSHVEKFGNNPVSKGLLTFETSSALGPQMSATVQLDSKKKQHLYVKDIKVDGQFRVFSLYAQGEYGLSYERDSMTGQMSGESNMKFNSTYFQGTNQIVGMYQDGMLSVTSTSDLQDGIFKNTASLKYENYELTLKSDSSGQYENFAASNKLDMTFSKQSALLRSEHQANYKSLRLVTLLSGSLTSQGVELNADILGTDKINTGAHKSTLKIAQDGVSTSATTNLKYSPLLLENELNAELGLSGASMKLSTSGRFKEHHAKFSLDGRAALTEVSLGSIYQAMILGADSKNVFNFKLSREGLKLSNDMMGSYAEMKLDHTHSLRISGLSLDFFSKMDNIYSGDKFYKQNFNLQLQPYSFGITLSNDLKYDALVLTNNGRLRLEPLKLNVGGNFKGTYQNNELKHIYTISYTDLVVASYRADTVATVQGVEFSHRLNADIEGLASSVDVTTSYSSDPLHFNNVFRFVLAPFTLGVDTHTSGDGKMSLWGEHTGQMYSKFLLKAEPLALTFSHDYKGSTSHNLLYKNSVSTALEHTLSALLTPAEQTSSWKFKTSLNDKVYSQEFEAYNTKDKIGIELSGRADLSGLYSPIKVPFFYSEPVNVLNSLEINDAFDEPREFTIDAVVKYDKNQDVHTISLPFFQSLPDYLERNRRGIISLLEAMKGELQRLSVDQFVRKYRVALSRLPQQIHDYLNASDWERQVAGAKEKLTSFMENYRITDNDVLIALDSAKINLNEKLSQLETYAIQFDQYIRDNYDAQDLKRTIAQIIDRIIEKLKMLDEQYHIRVNLAKSIHNLYLFVENVDLNQISSSGASWIQNVDTKYQIRIQIQEKLQHLRTQIHNIDIQQLAAELKQQIEALDVPMHLDQLRTAILFQRISVIIERVKYFVMNLIEDFKVTEKINTFRVIVRELIEKYEVDRQIQVLMDKSIELAHRYSLSEPLQKLSNVLQQIEIKDYYDKLVGFIDDTVEWIKAVSFKNIIEELNRLIDMSVKKLKAFDYHQFVDKTNSKIREMTQRINAEIQALELPQKTEALKLWVEDFKTTVSNSLEKLKDTKVTVVVDWLQDGLAQIKAQFQDALEDVRDRIYQMDIQGELERCLSLVSQVYSTVVTYISDWWTLTAKNITDFAEQYSTQKWAESVKALVEQGFIVPEIQTFLGTMPAFEVSLHALQEANFQTPDFIVPLTDLRIPSIWINFKMLKNVKIPLRFSTPEFTLLNTFRVRSFTIDLLEIKAKIIRTIDQMLSSELQWPLPEVYLRDLEMVNISLARLSLPDFHVPEITIPEFTIPNVNLKDLQVPDLHIPEFQLPHLSCTTEIPAFGKLHSVLKIQSPLFILDASANIQNITTSENKAEIVASVTARGESKFEALNFDFQAQAQFLELNANPLVLKESVNFSSKHVRMEHEGKILVSGKALEGKSDTVARLHTEKNTVEFNNGIVVKINNQFTLDSQTKYFHKLSVPRLDFSSKASLNNEIKTLLEAGHMAWTSSGTGSWNWACPNFSDEGIHSSKISFIVDGPIASFGLSNNINGKHLRVVQKLTSESGFLNYSRFEVESKVESQHVGSSILTAEGRALLGDAKAEMTGEHNANLNGKVIGTLKNSLFFSAQPFEITASTNNEGNLKVSFPLKLTGKIDFLNNYALFLSPHAQQASWQLSTRFNQYKYNQNFSAINNEHNMEASIVMNGDANLDFLNIPLTIPEINLPYTRFTTPLLKDFSIWEETGLKEFLKTTKQSFDLSIKAQYKKNRDKHSVVIPLKMFYEFMLNNVNSWDRKFEKVRDNALHFLTASYNETKIKFDKYKTENSLNQPSRTFQNRGHTIPVLNIEVSPFAVETLASSHVIPKAIRTPSVTIPGPNIIVPSYRLVLPSLQLPVFHIPRTLFKFSLPDFKKLSTIDNIYIPAMGNFTYDFSFKSSVITLNTNAGLYNQSDLVARFLSSSSFVTDALQYKLEGTSRLMRKKVLKLATAVSLTNKFLKGSHDSTISLTKKNMEASVKTTANLHAPIFTMNFKQELNGNTKSKPTVSSSIELNYDFNSSKLHSAAKGGVDHKFSLESLTSYLSIESFTKGNIKGSFLSQEYSGSVANEANVYLNSKGTRSSVRLQGASNFAGIWNFEVGENFAGEATLRRIYGTWEHNMINHLQVFSYFDTKGKQTCRATLELSPWTMSTLLQVHVSQPSPLFDLHHFDQEVILKASTKNQKVSWKSEVQVESQVLQHNAHFSNDQEEVRLDIAGSLEGQLWDLENFFLPAFGKSLRELLQIDGKRQYLQASTSLHYTKNPNGYLLSLPVQELTDRFIIPGLKLNDFSGIKIYKKLSTSPFALNLTMLPKVKFPGVDLLTQYSKPEGSSVPTFETTIPEIQLTVSQFTLPKSFPVGNTVFDLNKLTNLIADVDLPSITLPEQTIEIPSLEFSVPAGIFIPFFGELTAHVGMASPLYNVTWSTGWKNKADHVETFLDSTCSSTLQFLEYALKVVGTHRIENDKFIYKIKGTLQHCDFNVKYNEDGIFEGLWDLEGEAHLDITSPALTDFHLHYKEDKTSVSASAASPAIGTVSLDASTDDQSVRLNVYFRPQSPPDNKLSIFKMEWRDKESDGETYIKINWEEEAAFRLLDSLKSNVPKASEAVYDYVKKYHLGHASSELRKSLQNDAEHAIRMVDEMNVNAQRVTRDTYQSLYKKMLAQESQSIPEKLKKMVLGSLVRITQKYHMAVTWLMDSVIHFLKFNRVQFPGNAGTYTVDELYTIAMRETKKLLSQLFNGLGHLFSYVQDQVEKSRVINDITFKCPFSPTPCKLKDVLLIFREDLNILSNLGQQDINFTTILSDFQSFLERLLDIIEEKIECLKNNESTCVPDHINMFFKTHIPFAFKSLRENIYSVFSEFNDFVQSILQEGSYKLQQVHQYMKAFREEYFDPSVVGWTVKYYEIEEKMVDLIKTLLAPLRDFYSEYSVTAADFASKMSTQVEQFVSRDIREYLSMLADINGKGREKVAELSIVVKERIKSWSTAVAEITSDYLRQLHSKLQDFSDQLSGYYEKFVAESTRLIDLSIQNYHMFLRYIAELLKKLQVATANNGLLKRGDFEAAVKLGIACLYNEGLSVSDEAYAEVNGLKASRFFSMDERLNMGSDPFIWLSICPPCFRKLRDFAGKGCWEAQPALAKDCAGGSQLGLEGKAFSESVCQLFQASQAVNKQQIFSVQKGLSDTVRYILIGWLVEVAPMKDFTSLCLHLTVECVGRYLQRKLVPRYKLQLLGIACMVICTWFISKEILTIREAVRLTDNTYKYKDLVRVKREIISALEGKIRIPTVVDYKEVLLTLVPVTPRTQYLCSFLCELTLSVYTPAHLASAALLLARLMHGQTQP", "sequence_length": 4743, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f89d389c66e300038ff6be8b11fd2fe06c48d37fb5de6dd01aa5203be32f37dc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7TMA5.json", "taxon_id": "10116", "uniprot_accession": "Q7TMA5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1081-pf06448.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06448", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1081-pf06448.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vit-open-b-sht-pf09172.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vit-open-b-sht-pf09172.yaml" } ], "pfam_ids": [ "PF00094", "PF01347", "PF06448", "PF09172", "PF29934" ], "protein_name": "Apolipophorins", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARMKYNIALIGILASVLLTIAVNAENACNLGCPKSDNGLLKYIPGNYYDYSFDSILTIGASSDVPNDSDDTSLKVSGSAKIFAKGNCGYTLQLSSVKVTNTKESVEKKILNSIQKPVQFTLVSGILEPQICSDSSDLDYSLNIKRAVVSLLQSGIEAEHEVDVFGMCPTHTSTSKVGNANIITKARNLNSCSHREQINSGLVSGKVNEKAGITSSLLLQANYIKESRIVNHLIENVQLTETYKFIGNTKRNSDISAKVVTILKLKNPSGTKANSPGTGSTVRSLIFQRPETYTSKNINALKTILSDLVDSTGDYVKKETAKKFVEFIRLLRQSDSETLLELAAFPHPNKVLARKVYLDGLFRTSTAESARVILKQLSKFDEKEKLLAILSLNIVKSVDKETLNQAASQLLPNAPKELYIAVGNLVAKYCLKNYCQGPEIDAISKKFSDGLKHCKPNTKREEERIVYILKGLGNAKSLSGNTVAALSECASTGRSNRIRVAALHAFSKVKCEETLQSKSLELLKNRNEDSELRIEAYLSAISCPNAEVANQISEIVNSETVNQVGGFISSNLKAIRDSTDVSRDQQKYHLANIRVTKTFPVDYRRYSFNNEVSYKLESLGVGASTDYQIIYSQHGFLPRSSRINVTTEFFGTNYNVFEASVRQENVEDVLEYYLGPKGLVNKDFDEIVKLIEVGNNGVAAGGRARRSIVDDVSKISKKYKMYGVKNVQDLNLDVSLKLFGSELAFLSLGDNIPSSLDDIINYFSTSFEKAKQELSSFEKQFSSHHLFLDTDLAYPTSIGVPLELVAQGFAATKVDLAVSLDINAILEQNWQKAKYRLKFVPSVDINANVQIGFNAQVLSTGLRVVSSAHSATGSDITVAVISDGEGFNVDLELPREKLELINFNVDTELYVAEQDKQKAIALKGNKKNKNSQPSEICFNQLELVGLNICIKSSTSLSEVQAGNGNVAERGLSVSEKFHLSRPFNFAVYLTTERKFTFKGIHTQEAFSQKWKLDYSTPGSKVSHDTTVVYELGNKPKTFSRLSFDNSQCHFAVEGGINNDKNELVVYGQYEQDKEIKKSKIGFSKNGNEYKPLIEIQDNNGISNSINGYHADGKIVVKKNSNNIERYNFENFQVSNSNNAHVAVNGWSDVGTNSLTSELRISLDHQTFLIKENLKLENGLYEAGFFINDEHSPENIYGSSIHLTIADQSYALKTNGKAAAWSIGSDGSFNFQKLADSNSARAGSLVENVEIQYKNKQVGGIKIMSNFDVNKMDVDVEISREQKIGSIIVKYESNQRHAQDYSLEASAKINKHSIDVISKCDFNGNVYVVDNSLVTSWGTLLSAKGEIGQRYSAQDININIQGNVQISGKDKVTQWILKVIGTPDKTNSDFRISRDTSELIKLTSESQHPQDKISFAKLNLIVKNQLTAKGEFRVAKNGKGDFTASIDTLKTEPKHKLEIESKFHIQSPKYDIDASLTLDGKRKVHLKSENTIEKLKFSTKNIGEANDKIIAFEANGSLKGELRGNGEIQGTFIFNAPDGRVIDGSINRKISTNAKSGLSQGNIDAQLSDTPFGSNKKRSISLIGKLDRLNTKTKEFSANSNLVYTAFNGEKSEISYQIKQQPNGDAKNIDFSLKAYGNPLPQPFEIAFALGDYSAQHAVVSITSKYGEIFSVSANGNYNNNQALEYGLQANIEIPKSTLKSLEINSHGKVLKSLIGNENAAYNVEFFLDSKTSLGQYARVNTVWNGTANDGSYDFEAQTNNMESPLKFNGKYHRKQTGNIKDGDLTGKQTYVLNAQYGAQYVKMDASLGYGAEKVDIAYVIDSSFDSVKDIKVNIRTFKPLDDSTYVVTALFKQTDKSYGLDTTFYHSAHKKGVDIRLDLLKEKPIIISSIAELLGDRKGKVLFEILNLADLDIKINSEASYVSIDEFYIIVNWSSKKLKLDGYELEARAQSKNIKIQLKNENGIIFSGTATYALKKELNKTIIDGQGKVQYQGKALSGNFKLTRQHFDFGTDREVGFSYTFMGNLGSKNGLGTLKITNKEFNTKFSVCEEKRQCTNLIVQSIVSIDEQKLDAVEHTTLIIVDLRDFGYPYEFELKSQNTRQGLKYQYHLDSFIITGNNFKYQFTANVQPTSSTIKLALPKRQILFETTQKIPADGSLFGRYEQTASFFIDKLQKPDDVARFSAIVDVTGTERVAFNANGKLKFEHPTIRPLSISGQLNGDVNQQIASAEVIFDIFRLPEQKVVGNSELRNSRSQNGFNIAYITTVKSAGLQFQYQINSNAAVDIEAHEYNIGLELNNGEIDVKAISFLNKEKFEISLSESNKHIIYIVGDFSKQNHYAKLNTKVQILDKNPIEITSEVQPNSAKIILKRQDFIDGTAEVKLGKEFKVDVIGSGKQLFNGRVALDATNFLQTNYFINEDHLNGFWHIVESEINKDSEYISENIKERLKKSRQVTDKIVKLAKEAGPDFSKLQGKLLDYKNDIVQELEADQSIAPIIDGIRTLFKKIAGIVDDINKAISEILEKAQKSIVDIYDKLQALWKDSLLKAWEDFIITVQKLISTLKTEFIKICTQSFKDLLSALEKYGPALKNYGKAIGEIVKPINDAAQEVIKIVVNAAEGVTHEFKQYVASLPSFESIRNEFNDKVKVLKLFEKATELTNSLFDQINILPQTPETSEFLQKLHDYLIAKLKQEHIDNEKYIEELGQLLIKAVRSIWVSIRSTYPGSSDHVIDFQSWIGSLTHSFDSLAVLPSILSFRSSILNCLLNENWDVVFNKKLLYSWIFFNDFELRGHVVDGKHIFTFDGLNFAYPGNCKYILAQDSVDNNFTIIGQLTNGKLKSITLIDREGSYFEVADNLALKLNGNLVEYPQHLSGLHAWRRFYTIHLYSEYGVGIVCTSDLKVCHININGFYTSKTRGLLGNGNAEPYDDFLLIDGTLAENSAALGNDYGVGKCTAIEFDNNQFKSSKRQEMCSELFGIESTLAFNFITLDSRPYRKACDIALAKVAEKEKEATACTFALAYGSAVKQINKWVLLPPRCIKCAGPAGQHDFGDEFTVKLPNNKVDVVFVVDINVTPGVLSNLIAPAINDIRESLRSRGFSDVQVGVIVFEETKRYPALLTSDGGKINYKGNVADVKLAGIKSFCDNCVEQIITEKRILDIYNSLKEIVKGIAPQADEKAFQLALDYPFRAGAAKSIIGVRSDSLEYKNWWKFVRAQLTGSITKFDGALIHLIAPVKGLSLEGVLSEKLIGFNSRLVATVDGKDSKKRTKLQFDNDMGIDFVLNNGGWVFATQNFEKLKASDQKKMLNQITSSLADTLFKTEIVSDCRCLPIHGLHGQHKCVIKSSTFVANKKAKSA", "sequence_length": 3351, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "29e36c42fdc71326379b7dc94771a7882ac0a7efa266bf2361db75831694c834", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9V496.json", "taxon_id": "7227", "uniprot_accession": "Q9V496", "uniprot_release": "2026_03" } ], "pfam_id": "PF09172", "short_name": "Vit_open_b-sht", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09175", "short_name": "Vit_b-sht_shell", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09178", "short_name": "MGTA_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trna-ile-lysidine-synthase-activity-go0032267.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032267", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trna-ile-lysidine-synthase-activity-go0032267.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/n-terminal-domain-of-trna-ile-lysidine-synthase-and-similar-proteins-t-cd01992.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd01992", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/n-terminal-domain-of-trna-ile-lysidine-synthase-and-similar-proteins-t-cd01992.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/lysidine-trna-ile-synthetase-c-terminal-ipr012796.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012796", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lysidine-trna-ile-synthetase-c-terminal-ipr012796.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": 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"record_id": "CHEBI:78688", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/polyketides/2-4-diacetylphloroglucinol.yaml" } ], "pfam_ids": [ "PF00440", "PF09209" ], "protein_name": "Transcriptional regulator PltZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MKQPPAQTTRNIMNTRRRTSRSDGEHTKIRILEVAARLFAQHGYANTASKLICEEAGADLAAINYHFGSREALYKAVLIEGHKQLVSFEALSQLAQSEEPALIKLDSFIDAIVTRVLDEQSWQSKVCAREILAPTVHFTSLVQEEVMPKFRLLEALISEITGFPIGDPALARCTISIIAPCLMLAVIDRQQPSPLQAVLQHDANALKAHFKLFARSGLAAIAQ", "sequence_length": 223, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7bd72257f85150897545fb2955ce3a28584e6c5aa089b0258bf6f356426aff5a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4KCY3.json", "taxon_id": "220664", "uniprot_accession": "Q4KCY3", "uniprot_release": "2026_03" } ], "pfam_id": "PF09209", "short_name": "CecR_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/be-c-pf09210.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09210", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/be-c-pf09210.yaml" } ], "pfam_ids": [ "PF03065", "PF09210" ], "protein_name": "Probable 1,4-alpha-glucan branching enzyme Rv3031", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTSASPVPGLFTLVLHTHLPWLAHHGRWPVGEEWLYQSWAAAYLPLLQVLAALADENRHRLITLGMTPVVNAQLDDPYCLNGVHHWLANWQLRAEEAASVRYARQSKSADYPSCTPEALRAFGIRECADAARALDNFATRWRHGGSPLLRGLIDAGTVELLGGPLAHPFQPLLAPRLREFALREGLADAQLRLAHRPKGIWAPECAYAPGMEVDYATAGVSHFMVDGPSLHGDTALGRPVGKTDVVAFGRDLQVSYRVWSPKSGYPGHAAYRDFHTYDHLTGLKPARVTGRNVPSEQKAPYDPERADRAVDVHVADFVDVVRNRLLSESERIGRPAHVIAAFDTELFGHWWYEGPTWLQRVLRALPAAGVRVGTLSDAIADGFVGDPVELPPSSWGSGKDWQVWSGAKVADLVQLNSEVVDTALTTIDKALAQTASLDGPLPRDHVADQILRETLLTVSSDWPFMVSKDSAADYARYRAHLHAHATREIAGALAAGRRDTARRLAEGWNRADGLFGALDARRLPK", "sequence_length": 526, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2993c155210b98a4d12b2cc5c1fce1b4478ac0a0b1c8a12469bd44cc562c526c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WQ27.json", "taxon_id": "83332", "uniprot_accession": "P9WQ27", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/be-c-pf09210.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09210", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/be-c-pf09210.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glyco-hydro-57-pf03065.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03065", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glyco-hydro-57-pf03065.yaml" } ], "pfam_ids": [ "PF03065", "PF09210", "PF14520" ], "protein_name": "1,4-alpha-glucan branching enzyme TK1436", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKGYLTFVLHTHIPYVRKHGKWPFGEEWVFEAISETYIPLLMEFERLRDSGVKFGIVINVTPVLAEQLTDEYMKKAFEEYMERKLKAMEEDLKSGKYDEKAVSYMLNYFRKVYDYWKAINGDIIGKLRELQDQGYVEVITSAATHGYLPLLGRDEAIRAQIANGVATYEKHFGMKPKGIWLPECAYRPAGEWELPGGRKVKRQGIEKFLEEFGLRYFFVESRLIDEGPASNVYGEVLIADTEKTTLRPYWIKGSNVAVFARNRETGHQVWSAHYGYPGDFWYREFHKKAPKSGGQYWRITSKEVGLGEKEFYDPDKAMERVEEHARHFVSLVERLLREHEEKFGEKGIIVAPYDTELFGHWWFEGVKWLGRVLELLYQRGVETPTLSRFLEEYSGEKHEIELPEGSWGANSDHSTWWNEETEWTWPHIYRAEDRMVAIVSRFRGRDELTNRVIEQLARELLILEASDWQFLITTGQAKEYAKRRVLIHSRDFHRLANELVRYVKIGEFDVKLLEELEERDNPFRPVVVGPYVSENPPELEEYVEPPEVPPEKEETEEKPKVLTEKATSLALAVKKVKPVKEETREVKKKAVEASKRGKRKSSKSKRLPRKVSKKAPSKGPSDLLSIKGIGPKTFQKLKRAGVETIEDLKNANIEDLARKTGISTKRLKKFIAQVE", "sequence_length": 675, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "030b371dc748729bfd94cd150c58ef63fd5e75976da544c04d9fe33391e2f229", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5JDJ7.json", "taxon_id": "69014", "uniprot_accession": "Q5JDJ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/be-c-pf09210.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09210", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/be-c-pf09210.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glyco-hydro-57-pf03065.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03065", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glyco-hydro-57-pf03065.yaml" } ], "pfam_ids": [ "PF03065", "PF09210" ], "protein_name": "1,4-alpha-glucan branching enzyme TTHA1902", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARFALVLHAHLPYVRAHGMWPFGEETLYEAMAETYLPLIRVLERLRAEGVEAPFTLGITPILAEQLADARIKEGFWAYAKDRLERAQGDYQRYRGTALEASARHQVAFWELTLDHFQRLSGDLVAAFRKAEEGGQVELITSNATHGYSPLLGYDEALWAQIKTGVSTYRRHFAKDPTGFWLPEMAYRPKGPWKPPVEGPPEGVRPGVDELLMRAGIRYTFVDAHLVQGGEPLSPYGEAALGPVESQEATYHVHELESGLRVLARNPETTLQVWSADYGYPGEGLYREFHRKDPLSGLHHWRVTHRKADLAEKAPYDPEAAFAKTEEHARHFVGLLERLAGRHPEGVILSPYDAELFGHWWYEGVAWLEAVLRLLAQNPKVRPVTAREAVQGPAVRTALPEGSWGRGGDHRVWLNEKTLDYWEKVYRAEGAMREAARRGVLPEGVLRQAMRELLLLEASDWPFLMETGQAEAYARERYEEHARAFFHLLKGASPEELRALEERDNPFPEADPRLYLFREA", "sequence_length": 520, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "530c9be9b5ee62215543a095d2659dccfd1c9b8610a78ba555603bce81da4de0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5SH28.json", "taxon_id": "300852", "uniprot_accession": "Q5SH28", "uniprot_release": "2026_03" } ], "pfam_id": "PF09210", "short_name": "BE_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09211", "short_name": "DUF1958", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/eham-pf09218.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/eham-pf09218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/eham-like-superfamily-ipr036606.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036606", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/eham-like-superfamily-ipr036606.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/eham-like-1-10-3070-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.3070.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/eham-like-1-10-3070-10.yaml" } ], "pfam_ids": [ "PF09218" ], "protein_name": "Uncharacterized protein MJ0517", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVIMTEIVDIDKKYVENSLKQKMNVLKDNRFLMDDVFIPIAKALKIEVEEVIEIFAKKLDFASCYELHAYAEQAKMGCLGRKVDIDLGLCWLSDFFGLIKKEEADLIRKKVVESYLLYKKPYKEALEEGRQMIIKLLKEE", "sequence_length": 140, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ed6546ac5c7484983715e3faec4256198641bcb8eb1d3e592a3d5500ccdce163", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57937.json", "taxon_id": "243232", "uniprot_accession": "Q57937", "uniprot_release": "2026_03" } ], "pfam_id": "PF09218", "short_name": "EhaM", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1961-pf09224.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09224", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1961-pf09224.yaml" } ], "pfam_ids": [ "PF09224" ], "protein_name": "Uncharacterized protein YesU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYKEGACLYRNPLRSKSDVKDWRMEGGGQISFDDHSLHLSHVQDEAHFVFWCPETFPDGIIVTWDFSPIEQPGLCMLFFAAAGIRGEDLFDPSLRKRTGTYPEYHSGDINALHLSYFRRKYAEERAFRTCNLRKSRGFHLAAMGADPLPSPDDADSPYRMKLIKDKGYVHFSINGLPILEWMDDGSTYGPVLTKGKIGFRQMAPMKAVYRDFAVHQAVRR", "sequence_length": 220, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9034001398c0e979a55f486fd1549c0ce1b9b1e840a4112e62a5bc549f2f9856", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31524.json", "taxon_id": "224308", "uniprot_accession": "O31524", "uniprot_release": "2026_03" } ], "pfam_id": "PF09224", "short_name": "DUF1961", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Penicillium brevicompactum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bubble-pf09227.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09227", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bubble-pf09227.yaml" } ], "pfam_ids": [ "PF09227" ], "protein_name": "Bubble protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "DTCGSGYNVDQRRTNSGCKAGNGDRHFCGCDRTGVVECKGGKWTEVQDCGSSSCKGTSNGGATC", "sequence_length": 64, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "309d5c60726d55764696ba16fcee26fc79d17267e84ebda2c30f10a6e706a500", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P83799.json", "taxon_id": "5074", "uniprot_accession": "P83799", "uniprot_release": "2026_03" } ], "pfam_id": "PF09227", "short_name": "Bubble", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1963-ipr015315.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015315", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1963-ipr015315.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1963-pf09234.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09234", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1963-pf09234.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/ywqg-like-superfamily-ipr035948.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035948", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/ywqg-like-superfamily-ipr035948.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/ywqg-like-2-30-320-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.30.320.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ywqg-like-2-30-320-10.yaml" } ], "pfam_ids": [ "PF09234" ], "protein_name": "Uncharacterized protein YwqG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNHLPEKMRPYRDLLEKSAKEYVKLNVRKGKTGRYDSKIAGDPYFPKHETYPTDENGQPMKLLAQINFSHIPQLDGYPSSGILQFYISVHDDVYGLNFDDRCEQKNFRVIYFENIVENDDELVSDFSFIGTGECDFPILSEAAVEPVKSSEWVLPTDFQFEQYTGMETMEFFGQFGEDEEDIYNELAENGFGHKIGGYASFTQHDPREYAYKEHTIMLLQIDSDDDIDSMWGDVGIANFFITPEDLRKKDFSNVLYNWDCS", "sequence_length": 261, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f93b97fd0aeac243ad8a43c8c541f8e499fa4c5db81d8ffa01ada74604571645", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P96719.json", "taxon_id": "224308", "uniprot_accession": "P96719", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1963-pf09234.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09234", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1963-pf09234.yaml" } ], "pfam_ids": [ "PF09234" ], "protein_name": "Uncharacterized protein YpfL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDERIPCKNPQCSHFILPATAARTEGYCMPCVQARYRQVQEEYIRKNRKTIDAFSGITNPVEMLKLVHEPREHDPLIEWIPCPIPTDELYKKLSDDESRDMVDYAEELFDSGWQEEAQEIALCLAAFTQANLDNFLRQVINEEELELSSPLPFHRAPPDVRDALLQKVETDDENRDGILCALAWIGDEVVVEHFNRWRQEPPAWSASLHILPHRYAHQAGWELTENGRRRDLYFTQCTHLVKQAPEQPAVFRAVAEYGENCPHCSLPLINLFEVAPSAVGLSTQGWPGQIRILTCQCCTAYNTVFATVDPQGQPRWYEKNALSTLAVENSADWITLPLDVLHPGESRLPLFAAEIFLPTTFSQLGGHPAWVQDTDYPTCPTCAQTMMFLAQLSYEDIEEEEYAEGMLYGFICPSCQTTATSYQQT", "sequence_length": 425, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4fa42f8208221663aeb75ce1831a7d25fae342b6630ee205d87e6cd753b87c22", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZFU6.json", "taxon_id": "99287", "uniprot_accession": "Q9ZFU6", "uniprot_release": "2026_03" } ], "pfam_id": "PF09234", "short_name": "DUF1963", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09244", "short_name": "Suc_Porlyase_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bipolaris victoriae (strain FI3)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1965-pf09248.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09248", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1965-pf09248.yaml" } ], "pfam_ids": [ "PF01179", "PF02727", "PF09248" ], "protein_name": "Copper amine oxidase vicK1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLFLLFTLTLVNIFSVSLQEPIQNQPAGNNTITSPHRNVWRALSEAEFSGVSAVLVHQLNLTTSRGGNRIIQIDYLYPNKSDVLLFLDHNGEEPKRYARATVQFGSPEVPYLQEYRIGPLPATNTTAVEPLRFPFNGKVQGKTKITSLDADGIDAFLPQLSSVVEDITRKLWNTTLAEGGVSFNLGKASFNSDSTQTIWLGFLNNATTGFDSSTLLPLGVSMQLDITSRDYNDWFVLYWFYNNKLYTPTSFNETVYSSDFQPPLANIDGPWTSTNKQEPTFLLDDLPPPKAISRGKNRYNLDTEENYVQWMDFSFYFSSHTDRGLSLFNVVYKSKRIIYELSLQEALAHYAGVEPVPSEAVYFDTQTGMGRSMISLIKGYDCPDYATYLNSSFSSRTGVTITPDAICLFESDSQFPLRRHTSQAFGYASAARNVVFTVRWIATVGNYDYLFDYDFFYDGAIEVKVRASGYIQGAYYAGNEEYGFKIHDALSGSMHDHVMTFKADLDIYGEKNSVQKVEVVPETTIYPWSQGQPHNTMKLNRGFVTSETDSSIDWAADDAISYTIVNKDSPNKYGEYPGYRFRRVAPAIHLTVKNSTSGGKALHYATHDLFITQQKDNEPCAADRNNAYNIDDPLVDFEKFLDGESLEQEDLVLWINMGMHHTPHTEDLPNTIMTSAYSGIRFEPFNYLESGDPSVKSAQQARIILSNS", "sequence_length": 709, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0a5e98bd5451dd1df8692bfba4c2b37115415d8028b9f08f97f000e0cbd88d54", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/W7E8S5.json", "taxon_id": "930091", "uniprot_accession": "W7E8S5", "uniprot_release": "2026_03" } ], "pfam_id": "PF09248", "short_name": "DUF1965", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/a-amylase-dom-c-pf09260.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09260", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/a-amylase-dom-c-pf09260.yaml" } ], "pfam_ids": [ "PF00128", "PF09260" ], "protein_name": "4-alpha-glucanotransferase agtA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSMSALRHGLGVLYLASWLGSSLAASTEQWKSRSIYQTMTDRFARTDGSTTSPCNTTEGLYCGGTWRGMINHLDYIQGMGFDAVMISPIIENVEGRVEYGEAYHGYWPVDLYSLNSHFGTHQDLLDLSDALHARDMYLMMDTVINNMAYITNGSDPATHIDYSTLTPFNSSSYYHPYCKITDWNNFTNAQLCQTGDNIVALPDLYTEHAEVQETLSNWAKEVISTYSIDGLRIDAAKHVNPGFLKNFGDALDIFMTGEVLQQEVSTICDYQNNYIGSLPNYPVYYAMLKAFTLGNTSALATQVQSMKNSCNDVTALSSFSENHDVARFASMTHDMALAKNILTFTLLFDGVPMIYQGQEQHLDGPGSPENREAIWLSEYNTDAELYKLIGKLNAIRKHAYRLDNHYPDVETYPIFEGGSELGFRKGIEGRQVVMLLSTQGTNSSAYNLSMPVSFTGGTVVTEILNCVNYTVNTQSELVVPMDKGEPRVFFPADLMPGSGLCGLPVANVTYAALRTQGAAAAEAALSLGIKTDAASSALLSLGLSVVAGLIVGMW", "sequence_length": 555, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e96c5811ea021b89a7e44c026997dbf8fc0a3ba36aadaa013f1d721867ba18d1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2QTS4.json", "taxon_id": "425011", "uniprot_accession": "A2QTS4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus oryzae (strain ATCC 42149 / RIB 40)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/a-amylase-dom-c-pf09260.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09260", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/a-amylase-dom-c-pf09260.yaml" } ], "pfam_ids": [ "PF00128", "PF09260" ], "protein_name": "Alpha-amylase A type-1/2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMVAWWSLFLYGLQVAAPALAATPADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAGVYCIGEVLDGDPAYTCPYQNVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIILNDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGFVTYKNWPIYKDDTTIAMRKGTDGSQIVTILSNKGASGDSYTLSLSGAGYTAGQQLTEVIGCTTVTVGSDGNVPVPMAGGLPRVLYPTEKLAGSKICSSS", "sequence_length": 499, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a2f84e63fed50d3b1ae982dce01846c6dcdfa736e8a502ac78c4535e71d79e24", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C1B3.json", "taxon_id": "510516", "uniprot_accession": "P0C1B3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/a-amylase-dom-c-pf09260.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09260", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/a-amylase-dom-c-pf09260.yaml" } ], "pfam_ids": [ "PF00128", "PF09260" ], "protein_name": "4-alpha-glucanotransferase aah3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFGVYFVLLFLSSALIHVANAGSNAEWRKRIIYQILTDRFAVDDGSTDNPCDPDANQYCGGTWKGIENKLDYIEDMGFNAIWISPIDKNIEGDIDGAGYAYHGYWNTDYESLNEHFGTEDDLVSLITAAHKAGIWVMLDSIVNSMALAPPLADADYSSLNPFNKESYFHPYCLIDWDITDNETNVMDCWQDSGVLLADLDVESSDVSSYLSDHFKSLISKYDFDGLRIDAVKMMNYTFFPDFVDATGVYSVGEVFSYDPDTMCSYMSVLPGVTNYFLQLYINFSFTATGAGFTLIPTYQEVMASNCSKYDSTLMLTFIENHDLYRFPYYTSDQSQIMGALSFVLIWDGIPSIFYGQEQGFNGGEDPANRPALWLTDYDQSNPYYTVIKTMVAFRKFVITQDPDWVTSTYQSIESAVDHYVGQKNDVLVMFNNMGVTNNLTIYEVETNYTANEVVSDVFGHRTLTVGADKTLTASMTNGYPLIMYPHSKMSGFTLPTVNRTVMPSTSATATTTVYTSYYSPSYSARSFTGTGSIFTISSSSRLILSFKTLVFGLGVTAMLFVLFF", "sequence_length": 564, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "56fec1792152b4a1048723b2ba0ca8a80078715269d177d5831ab0dee7b4cddd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y7S9.json", "taxon_id": "284812", "uniprot_accession": "Q9Y7S9", "uniprot_release": "2026_03" } ], "pfam_id": "PF09260", "short_name": "A_amylase_dom_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1967-pf09269.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09269", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1967-pf09269.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gtp1-obg-pf01018.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01018", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gtp1-obg-pf01018.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P20964", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01018", "PF01926", "PF09269" ], "protein_name": "GTPase Obg", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0076b77565555d4a23898b30e75498712e7b100514f91b2bd0c70548b18ae4fc", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MFVDQVKVYVKGGDGGNGMVAFRREKYVPKGGPAGGDGGKGGDVVFEVDEGLRTLMDFRYKKHFKAIRGEHGMSKNQHGRNADDMVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPANPAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPEFPLYDEEELTQNRVMYTMENEEVPFNITRDPDGVFVLSGDSLERLFKMTDFSRDESVKRFARQMRGMGVDEALRERGAKDGDIIRLLEFEFEFID", "sequence_length": 428, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0076b77565555d4a23898b30e75498712e7b100514f91b2bd0c70548b18ae4fc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P20964.json", "taxon_id": "224308", "uniprot_accession": "P20964", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1967-pf09269.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09269", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1967-pf09269.yaml" } ], "pfam_ids": [ "PF01018", "PF01926", "PF09269" ], "protein_name": "GTPase Obg", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPRFVDRVVIHTRAGSGGNGCASVHREKFKPLGGPDGGNGGRGGSIVFVVDPQVHTLLDFHFRPHLTAASGKHGMGNNRDGAAGADLEVKVPEGTVVLDENGRLLADLVGAGTRFEAAAGGRGGLGNAALASRVRKAPGFALLGEKGQSRDLTLELKTVADVGLVGFPSAGKSSLVSAISAAKPKIADYPFTTLVPNLGVVSAGEHAFTVADVPGLIPGASRGRGLGLDFLRHIERCAVLVHVVDCATAEPGRDPISDIDALETELACYTPTLQGDAALGDLAARPRAVVLNKIDVPEARELAEFVRDDIAQRGWPVFCVSTATRENLQPLIFGLSQMISDYNAARPVAVPRRPVIRPIPVDDSGFTVEPDGHGGFVVSGARPERWIDQTNFDNDEAVGYLADRLARLGVEEELLRLGARSGCAVTIGEMTFDWEPQTPAGEPVAMSGRGTDPRLDSNKRVGAAERKAARSRRREHGDG", "sequence_length": 479, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6235730a166648ed95b9aedae216202aae4463f13c2a0580d1b877ccc6d4b930", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WMT1.json", "taxon_id": "83332", "uniprot_accession": "P9WMT1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": 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"MASISINCFFTPQALARPSRTRKIFAKPDKVSGRTRSPRKTKLQREVELKSRGGDKLQPVSDAGGEATTYTRLPPREDYYDVSLLSSSYLKVSEEVKLSESNVARVEEKIETLREIEEEEKEKEVKSYDDDDIWGNYRRLDVFEGSSRSIDEDDEDWEDEVFEYGDETDAEKDDSEGSELKDGEVLCFSGEEEEDEIGVKEKGVPAVMRCFDRAKIYVRAGDGGNGVVAFRREKFVPFGGPSGGDGGRGGNVYVEVDGSMNSLLPFRKSVHFRAGRGEHGRGKMQSGAKGDNVVVKVAPGTVVRQAREVGSEVEGEEGEEKEVLLELLHPGQRALLLPGGRGGRGNASFKSGMNKVPRIAENGEEGPEMWLDLELKLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHRGFGLGHEFLRHTERCSALVHVVDGSAPQPELEFEAVRLELELFSPEIAEKPYVVAYNKMDLPDAYEKWPMFQETLRARGIEPFCMSAVQREGTHEVISSVYELLKKYRAANAEPKALFDQANENLDHVAKKIDKERRAAINEFEVFRDSGTRAWHVVGAGLQRFVQMTNWRYMDSDKRFQHVLDACGVNKSLKNMGVKEGDTVIVGEMELIWHDSANGSSRPTDSNKTSTDSVRWPQWK", "sequence_length": 681, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "064bd407fea09488ecbfae299afcd385bfceaeef23e1f84240a35409294807df", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8L7L0.json", "taxon_id": "3702", "uniprot_accession": "Q8L7L0", "uniprot_release": "2026_03" } 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"Enterobacteria phage PRD1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1970-pf09301.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09301", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1970-pf09301.yaml" } ], "pfam_ids": [ "PF09301" ], "protein_name": "Protein P16", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKKKLLYWVGGGLVLILIWLWFRNRPAAQVASNWEGPPYMTYNQPQAGSVTLPVAGYTSPSPTLPNRNRSCGCNPAVSAAMAQGADLASKLTDSITSQLNDYASSLNDYLASQAGV", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3952d3c80e031726be0ae1e56fe9f9410abd3b171576366799de92b04506c3fc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P27392.json", "taxon_id": "10658", "uniprot_accession": "P27392", "uniprot_release": "2026_03" } ], "pfam_id": "PF09301", "short_name": "DUF1970", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tehb-year-like-domain-ipr015392.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015392", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tehb-year-like-domain-ipr015392.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tehb-like-pf09313.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09313", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tehb-like-pf09313.yaml" } ], "pfam_ids": [ "PF09313" ], "protein_name": "Uncharacterized protein YeaR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQIPQNYIHTRSTPFWNKQTAPAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFFVAPEVLMEGAQQRKVIHNGK", "sequence_length": 119, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5c936416e7f63e6796ca650504442d3ddf2155405680c2fdaddd876de7ce86ac", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64488.json", "taxon_id": "83333", "uniprot_accession": "P64488", "uniprot_release": "2026_03" } ], "pfam_id": "PF09313", "short_name": "TehB-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09314", "short_name": "DUF1972", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acdh-c-pf09317.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09317", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acdh-c-pf09317.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q47146", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00441", "PF02770", "PF02771", "PF09317" ], "protein_name": "Acyl-coenzyme A dehydrogenase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "87bcf6009cd196a4094bb9b6af9d4c4b1914d7af568cc77c677638be7655c716", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWSAWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKDHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALVKGLIDKDEAAILVKAEESRLRSINVDDFDPEELATKPVKLPEKVRKVEAA", "sequence_length": 814, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "87bcf6009cd196a4094bb9b6af9d4c4b1914d7af568cc77c677638be7655c716", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q47146.json", "taxon_id": "83333", "uniprot_accession": "Q47146", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhi", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acdh-c-pf09317.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09317", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acdh-c-pf09317.yaml" } ], "pfam_ids": [ "PF00441", "PF02770", "PF02771", "PF09317" ], "protein_name": "Acyl-coenzyme A dehydrogenase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMILSIIATVVLLGALFYHRVSLFLSSLILLAWTAALGVAGLWSIWLLVPLAIILVPFNLTPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPQLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYVQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTEEQKNHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGVVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPDRLLGGEEELGITCALIPTSTPGVEIGRRHFPLNVPFQNGPTRGNDIFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGESNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMAAAQNNDVNAFDKLLFKHIGHVGSNTVRSFWLGLTRGLTSHTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISTRLGDVLSQLYLASAVLKRYDDEGRHEADLPLVHWGVQDALYRAEQAMDDLLQNFPNRVVAGLLTAMIFPTGRHYLAPSDKLDHAVAKILQVPNATRSRIGRGQYLTPAEHNPVGLLEEALRDVIAADPIHQRICKELGKNLPFTRLDELARNALAKGLIDKDEAAILAKAEESRLRSINVDDFEPEALATKPVKLPEKVRKVEAA", "sequence_length": 814, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "de63bcf31b8393d8cc39f829e7c84a1311a2d869fc6199cb94d0f9b382108ade", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8Z937.json", "taxon_id": "90370", "uniprot_accession": "Q8Z937", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acdh-c-pf09317.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09317", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acdh-c-pf09317.yaml" } ], "pfam_ids": [ "PF00441", "PF02770", "PF02771", "PF09317" ], "protein_name": "Acyl-coenzyme A dehydrogenase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMILSIIATVVLLGALFYHRVSLFLSSLILLAWTAALGVAGLWSIWLLVPLAIILVPFNLTPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPQLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTEEQKNHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGVVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPDRLLGGEEELGITCALIPTSTPGVEIGRRHFPLNVPFQNGPTRGNDIFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGESNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMAAAQNNDVNAFDKLLFKHIGHVGSNTVRSFWLGLTRGLTSHTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDVLSQLYLASAVLKRYDDEGRHEADLPLVHWGVQDALYRAEQAMDDLLQNFPNRVVAGLLTAMIFPTGRHYLAPSDKLDHAVAKILQVPNATRSRIGRGQYLTPAEHNPVGLLEEALRDVIAADPIHQRICKELGKNLPFTRLDELARNALAKGLIDKDEAAILAKAEESRLRSINVDDFEPEALATKPVKLPEKVRKVEAA", "sequence_length": 814, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1f325920c4a7ee2321eac0ece449c9a805b8b09e71c83f524c81716784b825ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8ZRJ7.json", "taxon_id": "99287", "uniprot_accession": "Q8ZRJ7", "uniprot_release": "2026_03" } ], "pfam_id": "PF09317", "short_name": "ACDH_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/poly-glycerol-phosphate-alpha-glucosyltransferase-activity-go0047265.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0047265", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/poly-glycerol-phosphate-alpha-glucosyltransferase-activity-go0047265.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/accessory-sec-system-glycosyltransferase-gtfa-and-similar-proteins-thi-cd04949.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd04949", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/accessory-sec-system-glycosyltransferase-gtfa-and-similar-proteins-thi-cd04949.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glycosyl-transferase-1-domain-a-ipr015397.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015397", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycosyl-transferase-1-domain-a-ipr015397.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/glyco-trans-a-1-pf09318.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09318", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/glyco-trans-a-1-pf09318.yaml" } ], "pfam_ids": [ "PF00534", "PF09318" ], "protein_name": "Poly(glycerol-phosphate) alpha-glucosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLHAVSESNIKQIPDMDYYFISGGLPSNYGGLTKSLLLRSKLFGEECNQNTFFLTFRFDLELSSKIDELYSNGKIDKKFTSVINLFDDFLSVRTNGKRSYEERIGLDQIKKQVGMGKFAKTLLRLFGKKNNEMSVVYYGDGETIRYVDYWNDKNQLIKREEYTKNGNLVLVTHYDVQLNKMYLQEYINDQNQVYLDKLYVWNNEEKDVQLSHIIWYSLEGEIKVKDESELRQYWIEYLQKQNDKPKLFLVDSRPQDKHVFKVKKSPSSYYGAIIHNKHYGSNKYQIKGRYKEVFSQMYNLDAVFFITEEQLEDFKLISGEQETFFFTPHTIDKPLDPAVLNVPSEKYKAVIISRLASMKNLIHAVKAFSLVVKEIPEAKLDIFGSGEDFEKIKKEIEDTKLQNNVFLKGYTDNPDSEFQKAWLTISTSHFEGFGLSNMEALSNGCPVVTYDYDYGARSLVTDGANGYVIEQYNIEKLGQAIISLMKDESTHQKFSEQAFKMAEKYSRPNYIENWAFALNQMIEVRIEREKFSKKVGKKDPSISSYTEDFDKTKIEIDIENFDHNDIKKIRLVGLDRKNKAEIISTNLQNDQLFVIDLEKDVNIEKIAANKTQVIDFYIVFNANGHIKTMRRLSSEETKLSGNSIDTNNGYRVEPYTTVKGNFSWRVTEIKES", "sequence_length": 673, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0af250754c750c17a95c8f5358d52cc8f4b75b3b68a877394c8ba1a4e1f21d60", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P13484.json", "taxon_id": "224308", "uniprot_accession": "P13484", "uniprot_release": "2026_03" } ], "pfam_id": "PF09318", "short_name": "Glyco_trans_A_1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1977-dnaj-like-ipr015399.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015399", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1977-dnaj-like-ipr015399.yaml" } ], "pfam_ids": [ "PF00226", "PF09320" ], "protein_name": "DnaJ homolog subfamily B member 14", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGNRDEAEKCVQIAREALSAGNRDKAQRFLQKAEKLYPLPAARALLEIIMKNGSTAGSSTHCRKPPGSSDQSKPSCGKDGTSGAGEGGKVYTKDQVEGVLSINKCKNYYEVLGVTKDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYDLTGSEEQACNHQNNGRFNFHRGCEADITPEDLFNIFFGGGFPSGSVHSFSNGRAAYSHQHQHRHSGHEREEERADGGFSVFIQLMPIIVLILVSLLSQLMVSNPPYSLYPRSGSGQTIKMQTENLGVVYYVSKDFKSEYKGTLLQKVEKSVEEDYVTNIRNNCWKERQQKTDMQYAAKVYRDEQLRRKADALSMENCKELERLTSLYKGG", "sequence_length": 379, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "39a07ff9881fd1293e81953101c4cda679fb94b3a884f5023313c09d7698e18b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q149L6.json", "taxon_id": "10090", 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"PTM_REGISTRY_MIRROR", "sequence_sha256": "806a507fc27d3578536b3fd8f632d8db3a4ec7eaefad8ddb144261de0f308707", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q17438.json", "taxon_id": "6239", "uniprot_accession": "Q17438", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1977-dnaj-like-ipr015399.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015399", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1977-dnaj-like-ipr015399.yaml" }, { 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"MEGNRDEAEKCVEIAREALNAGNREKAQRFLQKAEKLYPLPSARALLEIIMKNGSTAGNSPHCRKPSGSGDQSKPNCTKDSTSGSGEGGKGYTKDQVDGVLSINKCKNYYEVLGVTKDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYDLTGNEEQACNHQNNGRFNFHRGCEADITPEDLFNIFFGGGFPSGSVHSFSNGRAGYSQQHQHRHSGHEREEERGDGGFSVFIQLMPIIVLILVSLLSQLMVSNPPYSLYPRSGTGQTIKMQTENLGVVYYVNKDFKNEYKGMLLQKVEKSVEEDYVTNIRNNCWKERQQKTDMQYAAKVYRDDRLRRKADALSMDNCKELERLTSLYKGG", "sequence_length": 379, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "50bb85801002973793810a7142a8d72fd2512c723bc7a6be2d82b40cff695bf4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TBM8.json", "taxon_id": "9606", "uniprot_accession": "Q8TBM8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1977-dnaj-like-ipr015399.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015399", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1977-dnaj-like-ipr015399.yaml" } ], "pfam_ids": [ "PF00226", "PF09320" ], "protein_name": "DnaJ homolog subfamily C member 18", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATTLGSGERWTQAYIDAIRRNKYPEDKRPDSHDPCGCCNCMKAQKEKKSENEWNQTRQGEGNATYTEEQLRGVQRIKKCRNYYDILGVSHNASDEELKKAYKKLALKFHPDKNCAPGATEAFKAIGNAFAVLSNPDKRLRYDEYGDEQVTFTVPRARSYHYYKDFEADISPEELFNVFFGGHFPSGNIHMFSNVTDDSQYYRRRHRHERTQTHKREEDKSQTPYSAFVQLLPVLVIVTISVITQLLAANPPYSLFYKSTLGYTISRETQNLQVPYFVDKNFDKAYRGASLRDLEKTIEKDYIDYIQTSCWKEKQQKSELTNLAGLYRDERLRQKAESLKLENCAKLSKLIGLRRAG", "sequence_length": 357, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "18a9a5522b247013495e8eff9bfd2a83db83e183fdc2763f066654d1a4d71e5d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CZJ9.json", "taxon_id": "10090", "uniprot_accession": "Q9CZJ9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1977-dnaj-like-ipr015399.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015399", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1977-dnaj-like-ipr015399.yaml" } ], "pfam_ids": [ "PF00226", "PF09320" ], "protein_name": "Chaperone protein dnaJ 49", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDGNKDDASRCLRIAEDAIVSGDKERALKFINMAKRLNPSLSVDELVAACDNLDSVSRNSSVSEKLKTMDGDDDKLETGKMKYTEENVDLVRNIIRNNDYYAILGLEKNCSVDEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVSKAFTCLSDGNSRRQFDQVGIVDEFDHVQRRNRRPRRRYNTRNDFFDDEFDPEEIFRTVFGQQREVFRASHAYRTRQPRNQFREEEINVAGPSCLTIIQILPFFLLLLLAYLPFSEPDYSLHKNQSYQIPKTTQNTEISFYVRSASAFDEKFPLSSSARANLEGNVIKEYKHFLFQSCRIELQKRRWNKKIPTPHCIELQDRGFVDRHIPI", "sequence_length": 354, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1e1903b00867c702e669960039450f212b93d71d039ec57a891b42e7933751bf", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FH28.json", "taxon_id": "3702", "uniprot_accession": "Q9FH28", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf1980-n-terminal-domain-ipr048493.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1980-c-pf21537.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21537", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1980-c-pf21537.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1980-pf09323.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09323", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1980-pf09323.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P94394", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09323", "PF21537" ], "protein_name": "UPF0703 protein YcgQ", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e6b3b2bfc110e7b933f720845ad67f3f834a099d19baf0cd9a5da257a7ce6af6", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MFRLLVLMGFTFFFYHLHASGNLTKYINMKYAYLSFIAIFLLAILTAVQAYLFIKSPEKSGHHHDHDCGCGHDHEHDHEQNKPFYQRYLIYVVFLFPLVSGIFFPIATLDSSIVKTKGFSFKAMESGDHYSQTQYLRPDASLYYAQDSYDKQMKQLFNKYSSKKEISLTDDDFLKGMETIYNYPGEFLGRTIEFHGFAYKGNAINKNQLFVLRFGIIHCIADSGVYGMLVEFPKDMDIKDDEWIHIKGTLASEYYQPFKSTLPVVKVTDWNTIKKPDDPYVYRGF", "sequence_length": 285, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e6b3b2bfc110e7b933f720845ad67f3f834a099d19baf0cd9a5da257a7ce6af6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P94394.json", "taxon_id": "224308", "uniprot_accession": "P94394", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus mutans serotype c (strain ATCC 700610 / UA159)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1980-c-pf21537.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21537", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1980-c-pf21537.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1980-pf09323.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09323", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1980-pf09323.yaml" } ], "pfam_ids": [ "PF09323", "PF21537" ], "protein_name": "Putative two-component membrane permease complex subunit SMU_746c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIRFLILAGYFELGMYLQLSGKLDRYINSHYSYLAYISMALSFILALVQLTIWMKRLKMHSHLSGKAAKFFSPIILAIPVFIGLLVPTVPLDSTTVSAKGYHFPLAAGSTTSGTSSDGTRVQYLKPDTSLYFTKSAYQKEMRATLKKYKGSGKLQITTQNYMEVMEIIYLFPDEFKNRQIEYVGFIYNDPKDKNSQFLFRFGIIHCIADSGVYGLLTTGGQTHYQNNTWVTVSGKLAIEYNQNLKQTLPVLHISQSSQTMQPKNPYVYRVF", "sequence_length": 271, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "606eb8d4557e751c8debadae7f71ff5cfca2e53ff5fcce41d3ab85d098f2a7ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8DUY4.json", "taxon_id": "210007", "uniprot_accession": "Q8DUY4", "uniprot_release": "2026_03" } ], "pfam_id": "PF09323", "short_name": "DUF1980", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 12, "discovery_scanned": true, "example_count": 12, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sec7-like-hds-pf09324.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09324", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sec7-like-hds-pf09324.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A2A5R2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01369", "PF09324", "PF12783", "PF16213", "PF20252" ], "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "533acf689901cdf7b2566d8b435faedc9dd8a72ea736116e7c75d7392c75fadb", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQESQTKSMFVSRALEKILADKEVKRPQHSQLRRACQVALDEIKAELEKQRLGAAAPPKANFIEADKYFLPFELACQSKSPRVVSTSLDCLQKLIAYGHITGNAPDSGAPGKRLIDRIVETICNCFQGPQTDEGVQLQIIKALLTAVTSPHIEIHEGTILQTVRTCYNIYLASKNLINQTTAKATLTQMLNVIFTRMENQVLQEARELEKPMQSKPQSPVIQATAGSPKFSRLKQSQAQSKPTTPEKAELPNGDHAQSGLGKVSLENGEAPRERGSPVSGRAEPSRGTDSGAQEVVKDILEDVVTSAVKEAAEKHGLPEPDRALGALECQECAVPPGVDENSQTNGIADDRQSLSSADNLEPDVQGHQVAARFSHILQKDAFLVFRSLCKLSMKPLGEGPPDPKSHELRSKVVSLQLLLSVLQNAGPVFRSHEMFVTAIKQYLCVALSKNGVSSVPDVFELSLAIFLTLLSNFKMHLKMQIEVFFKEIFLNILETSTSSFEHRWMVIQTLTRICADAQCVVDIYVNYDCDLNAANIFERLVNDLSKIAQGRSGHELGMTPLQELSLRKKGLECLVSILKCMVEWSKDLYVNPNHQATLGQERLPDQEMGDGKGLDMARRCSVTSVESTVSSGTQTAIQDDPEQFEVIKQQKEIIEHGIELFNKKPKRGIQFLQEQGMLGAAVEDIAQFLHQEERLDSTQVGEFLGDSTRFNKEVMYAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLMEKFAARYIECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSSIYDEIEGKKIAMKETKEHTIATKSTKQSVASEKQRRLLYNVEMEQMAKTAKALMEAVSHAKAPFTSATHLDHVRPMFKLVWTPLLAAYSIGLQNCDDTEVASLCLEGIRCAVRIACIFGMQLERDAYVQALARFSLLTASSSITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLELAQLIGTGVKTRYLSGSGREREGSLKGHSLAGEEFMGLGLGNLVSGGVDKRQMASFQESVGETSSQSVVVAVDRIFTGSTRLDGNAIVDFVRWLCAVSMDELASPHHPRMFSLQKIVEISYYNMNRIRLQWSRIWHVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKKNRSPTIRDMVIRCIAQMVSSQAANIRSGWKNIFAVFHQAASDHDGNIVELAFQTTGHIVSTIFQHHFPAAIDSFQDAVKCLSEFACNAAFPDTSMEAIRLIRFCGKYVSERPRVLQEYTSDDMNVAPGDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFEIMKSYGHTFAKHWWQDLFRIVFRIFDNMKLPEQQSEKSEWMTTTCNHALYAICDVFTQFYEALHEVLLSDVFAQLQWCVKQDNEQLARSGTNCLENLVISNGEKFSPAVWDETCNCMLDIFKTTIPHVLLTWRPAGMEEEVSDRHLDVDLDRQSLSSIDRNASERGQSQLSNPTDDSWKGAPYAHQKLLASLLIKCVVQLELIQTIDNIVFYPATSKKEDAEHMVAAQQDTLDAEIHIETENQGMYKFMSSQHLFKLLDCLQESHSFSKAFNSNYEQRTVLWRAGFKGKSKPNLLKQETSSLACCLRILFRMYVDENRRDSWDEIQQRLLRVCSEALAYFITVNSESHREAWTSLLLLLLTKTLKISDEKFKAHASMYYPYLCEIMQFDLIPELRAVLRKFFLRIGLVYKIWIPEEPSQVPAALSSTW", "sequence_length": 1792, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "533acf689901cdf7b2566d8b435faedc9dd8a72ea736116e7c75d7392c75fadb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2A5R2.json", "taxon_id": "10090", "uniprot_accession": "A2A5R2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sec7-like-hds-pf09324.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09324", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sec7-like-hds-pf09324.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:F4IXW2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01369", "PF09324", "PF12783", "PF16213", "PF20252", "PF23325" ], "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 5", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0334c4ec140337a3d7470cfeb2d8957a259aaa4a4f726319e5a0cb3e6b9ae263", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAAGGFLTRAFDTMLKESGGKKFPDLQKAIQAYQDGSKVVTQAAPSSIVESSQAEGGGEKTGVEADEPQKVTSAEVAQQASQSKSETINVSLANAGHTLGGAEVELVLKPLRLAFETKNLKIFDAALDCLHKLIAYDHLEGDPGLDGGKNSAPFTDILNMVCSCVDNSSPDSTVLQVLKVLLTAVASGKFKVHGEPLLGVIRVCYNIALNSKSPINQATSKAMLTQMISIVFRRMETDIVSASSTVSQEEHVSGDTSSPKNEEITAADENEKEMTLGDALTQAKDTTLASVEELHTLVGGADIKGLEAALDKAVHLEDGKKIKRGIELESMSIGQRDALLVFRTLCKMGMKEDSDEVTTKTRILSLELLQGMLEGVSHSFTKNFHFIDSVKAYLSYALLRASVSQSSVIFQYASGIFSVLLLRFRDSLKGEIGIFFPIIVLRSLDNSECPNDQKMGVLRMLEKVCKDPQMLVDVYVNYDCDLEAPNLFERMVTTLSKIAQGSQSADPNPAMASQTASVKGSSLQCLVNVLKSLVDWEKIRREAENSTRNANEDSASTGEPIETKSREDVPSNFEKAKAHKSTMEAAISEFNRNSVKGVEYLIANKLVERNPASVAQFLRSTSSLSKVMIGDYLGQHEEFPLAVMHAYVDSMKFSEMKFHSAIREFLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAYAVIMLNTDAHNPMVWPKMSKSDFTRMNATNDPEDCAPTELLEEIYDSIVQEEIKLKDDDTMKKLSSQRPGGEERGGLVSILNLGLPKRISAADAKSETEDIVRKTQEIFRKHGVKRGVFHTVEQVDIIRPMVEAVGWPLLAAFSVTMEVGDNKPRILLCMEGFKAGIHIAYVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRILLGLCDSEPDTLQDTWNAVLECVSRLEFIISTPGIAATVMHGSNQISRDGVVQSLKELAGRPAEQVFVNSVKLPSESVVEFFTALCGVSAEELKQSPARVFSLQKLVEISYYNIARIRMVWARIWSVLAEHFVSAGSHHDEKIAMYAIDSLRQLGMKYLERAELTNFTFQNDILKPFVIIMRNTQSQTIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVEKSFENVEQVILEHFDQVIGDCFMDCVNCLIRFANNKASDRISLKAIALLRICEDRLAEGLIPGGVLKPVDGNEDETFDVTEHYWFPMLAGLSDLTSDYRPEVRNCALEVLFDLLNERGNKFSTPFWESIFHRILFPIFDHVSHAGKESLISSGDVKFRETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKSDQTVVSISLGALVHLIEVGGHQFSEGDWDMLLKSIRDASYTTQPLELLNALSFDNPKKNLVLAGDIEADASDSPRVDRNPDDIKDNGKVSAQASPRIGTHGTSLESGIPPKADGSEGRPSSSGRAQKDVDDVNLQRSQTFGQRFMDNLFLRNLTSQPKSSVAEVTVPSSPYKHEDPTEPDSREEESPALGAIRGKCITQLLLLGAINSIQQKYWSNLKTPQKIAIMDILFSFIEFASSYNSYSNLRTRMNHIPTERPPLNLLRQELEGTTIYLDVLQKTTSGLADDASNSEDRLEGAAEEKLVSFCEQVLKETSDLQSTLGETTNMDVHRVLELRSPVIVKVLEGMCFMNNTIFRKHMREFYPLLTRLVCCEQMEIRGALANLFKAQLKPLLQQ", "sequence_length": 1739, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0334c4ec140337a3d7470cfeb2d8957a259aaa4a4f726319e5a0cb3e6b9ae263", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/F4IXW2.json", "taxon_id": "3702", "uniprot_accession": "F4IXW2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/big2-c-pf20252.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/big2-c-pf20252.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sec7-like-hds-pf09324.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09324", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sec7-like-hds-pf09324.yaml" } ], "pfam_ids": [ "PF01369", "PF09324", "PF12783", "PF16213", "PF20252" ], "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYEGKKTKNMFLTRALEKILADKEVKKAHHSQLRKACEVALEEIKVETEKQSPPHGEAKAGSGTLPPVKSKTNFIEADKYFLPFELACQSKCPRIVSTSLDCLQKLIAYGHLTGRAPDSTTPGKKLIDRIIETICGCFQGPQTDEGVQLQIIKALLTAVTSQHIEIHEGTVLQAVRTCYNIYLASKNLINQTTAKATLTQMLNVIFARMENQALQEAKQMERERHRQQQHLLQSPVSHHEPESPHLRYLPPQTVDHINQEHEGDLEPQTHDVDKSLQDDTEPENGSDISSAENEQTEADQATAAETLSKNDILYDGDYEEKPLDIVQSIVEEMVNIIVGDMGEGMAISASTEGNTGTVEDGSDSENIQANGIPGTPISVAYTPSLPDDRLSVSSNDTQESGNSSGPSPGAKFSHILQKDAFLVFRSLCKLSMKPLSDGPPDPKSHELRSKILSLQLLLSILQNAGPVFRTNEMFINAIKQYLCVALSKNGVSSVPEVFELSLSIFLTLLSNFKTHLKMQIEVFFKEIFLYILETSTSSFDHKWMVIQTLTRICADAQSVVDIYVNYDCDLNAANIFERLVNDLSKIAQGRGSQELGMSNVQELSLRKKGLECLVSILKCMVEWSKDQYVNPNSQTTLGQEKPSEQEISEVKHPETINRYGSLNSLESTSSSGIGSYSTQMSGTDNPEQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQHDFSGKDFVSALRLFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETKELTIPTKSTKQNVASEKQRRLLYNLEMEQMAKTAKALMEAVSHVQAPFTSATHLEHVRPMFKLAWTPFLAAFSVGLQDCDDTEVASLCLEGIRCAIRIACIFSIQLERDAYVQALARFTLLTVSSGITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLELAQLIGTGVKPRYISGTVRGREGSLTGTKDQAPDEFVGLGLVGGNVDWKQIASIQESIGETSSQSVVVAVDRIFTGSTRLDGNAIVDFVRWLCAVSMDELLSTTHPRMFSLQKIVEISYYNMGRIRLQWSRIWEVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKRNRSPTIRDMVVRCIAQMVNSQAANIRSGWKNIFSVFHLAASDQDESIVELAFQTTGHIVTLVFEKHFPATIDSFQDAVKCLSEFACNAAFPDTSMEAIRLIRHCAKYVSDRPQAFKEYTSDDMSVAPEDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFEIMKTYGHTYEKHWWQDLFRIVFRIFDNMKLPEQQTEKAEWMTTTCNHALYAICDVFTQYLEVLSDVLLDDIFAQLYWCVQQDNEQLARSGTNCLENVVILNGEKFTLEIWDKTCNCTLDIFKTTIPHALLTWRPTSGEAEPPSPSAVSEKPLDAISQKSVDIHDSIQPRSSDNRQQAPLVSVSTVSEEVSKVKSTAKFPEQKLFAALLIKCVVQLELIQTIDNIVFFPATSKKEDAENLAAAQRDAVDFDVRVDTQDQGMYRFLTSQQLFKLLDCLLESHRFAKAFNSNNEQRTALWKAGFKGKSKPNLLKQETSSLACGLRILFRMYMDESRVSAWEEVQQRLLNVCREALSYFLTLTSESHREAWTNLLLLFLTKVLKISDSRFKAHASFYYPLLCEIMQFDLIPELRAVLRRFFLRIGIVFQISQPPEQELGINRQ", "sequence_length": 1846, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3d31fbaca8b53b8a28a4998f9bcf27683ee59d071c575eaabf10f78b23239297", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G3X9K3.json", "taxon_id": "10090", "uniprot_accession": "G3X9K3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sec7-like-hds-pf09324.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09324", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sec7-like-hds-pf09324.yaml" } ], "pfam_ids": [ "PF01369", "PF09324", "PF12783", "PF16213", "PF20252" ], "protein_name": "ADP-ribosylation factor guanine nucleotide-exchange factor SEC7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEQNSVVNAEKGDGEISSNVETASSVNPSVKPQNAIKEEAKETNGEDQKCKGPENAGSTAETKETSNDATNGMKTPEETEDTNDKRHDDEGEDGDEDEDEDEDEDEDNGDEDDEDVDSSSSETSSEDGEDSESVSGESTESSSGEDEESDESDGNTSNSSSGDESGSEEEEEEEEEEEEEENAGEPAIAHQDSVPTNDSTAPRSTHTRNISLSSNGSNTNSTIILVKTTLETILNDKDIKKNSNAQKAIERTLQKFKEFDPQTTNNPHYVDSILVFEALRASCRTKSSKVQSLALDCLSKLFSFRSLDETLLVNPPDSLASNDQRQDAADGITPPPKQKIIDAAIDTISDCFQGEGTDDRVELQIVRALSSCILEEDSSSLCHGASLLKAIRTIYNVFVFSLNPSNQGIAQATLTQIISSVYDKIDLKQSTSSAVSLSTKNHQQQSAIELSEASENAETPAPLTLENMDKLNDDEERLMDAQQPDSIAITNQDLAVKDAFLVFRVMAKICAKPLETELDMRSHAVRSKLLSLHIIYSIIKDHIDVFLSHNIFLPGKERVCFIDSIRQYLRLVLSRNAASPLAPVFEVTLEIMWLLIANLRADFVKEIPVFLTEIYFPISELTTSTSQQKRYFLSVIQRICNDPRTLVEFYLNYDCNPGMPNVMEITVDYLTRLALTRVEITQTQRSYYDEQISKSLSTYNFSQLPLLTSSNLSSSPDVGQVNLLFPLDFALKMVSLNCIVSVLRSLSSWAHKALNPNTHTANKVLLNTTSSARQESRSSLSNDVRSSIMTSNDDFKPTYEDEESRSLSSQNIDADDPTQFENLKLRKTALSECIAIFNNKPKKAIPVLIKKGFLKDDSPISIAKWLLETEGLDMAAVGDYLGEGDDKNIAIMHAFVDEFDFTGMSIVDALRSFLQSFRLPGEGQKIDRFMLKFAERFVDQNPGVFSKADTAYVLSYSLIMLNTDLHSSQIKNKMSLQEFLENNEGIDNGRDLPRDFLEGLFNEIANNEIKLISEQHQAMLSGDTNLVQQQQSAFNFFNSRDLTREAYNQVSKEISSKTELVFKNLNKNKGGPDVYYAASHVEHVKSIFETLWMSFLAALTPPFKDYDDIDTTNKCLEGLKISIKIASTFRINDARTSFVGALVQFCNLQNLEEIKVKNVNAMVILLEVALSEGNYLEGSWKDILLVVSQMERLQLISKGIDRDTVPDVAQARVANPRVSYESSRSNNTSFFDVWGKKATPTELAQEKHHNQTLSPEISKFISSSELVVLMDNIFTKSSELSGNAIVDFIKALTAVSLEEIESSENASTPRMFSLQKMVDVCYYNMDRIKLEWTPLWAVMGKAFNKIATNSNLAVVFFAIDSLRQLSMRFLDIEELSGFEFQHDFLKPFEYTVQNSGNTEVQEMIIECFRNFILTKSESIKSGWKPILESLQYTARSSTESIVLKTQLLVSNDIVTNHFENVFSQEDAFSELVGVFREITKNKRFQKLSLHALESLRKMTQNVADICFYNENKTEEERKHNDALLRGKDIFQDVWFPMLFCFNDTIMTAEDLEVRSRALNYMFDALVAYGGKFNDDFWEKICKKLLFPIFGVLSKHWEVNQFNSHDDLSVWLSTTLIQALRNLIALFTHYFESLNRMLDGFLGLLVSCICQENDTIARIGRSCLQQLILQNVSKFNEYHWNQIGDVFDKLFDLTTANELFDYDPLQQGRKSSVSHHQTTNDTSQHSDDDSNDRRENDSNISETVERAHQEESSEDVGGDMVETLNGQTKLNNGNSVPTVKDELNPKPASLSIPKKTKHMKRNESNEDIRRRINIKNSIVVKCVLQLLMIELLNELFENEDFAHCIPYKEAIRITRLLEKSYEFSRDFNEDYGLRTRLVEARVVDKIPNLLKQETSAAAVLLDIMFQLYLNDDEKKADLITRLITICIQVVEGYVSLDDRTMERSINAWRSVIVEILQGYYEFDDEDFRLYCPAMYALVIQILDKSVPTELRHAIKQFLSRVGELYLSTD", "sequence_length": 2009, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f9f68b9fe09b3d92bdebcc0548232711749eeab4a69b6288613aa9e50a28fe4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P11075.json", "taxon_id": "559292", "uniprot_accession": "P11075", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/sec7-big1-like-c-terminal-domain-ipr046455.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046455", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sec7-big1-like-c-terminal-domain-ipr046455.yaml" } ], "pfam_ids": [ "PF09324", "PF16213", "PF20252" ], "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEILRKLQRDASGSKYKAIKESCTWALETLGGLDTVVKIPPHLLREKCLLPLQLALESKNVKLAQHALAGMQKLLSEERFVSMETDSDEKQLLNQILNAVKVTPSLNEDLQVEVMKVLLCITYTPTFDMNGSAVLKIAEVCIETYTCSCHQRSINTAVRATLSQMLGDLTLQLRQRQENTIIENPDAPQEFRSQGLTVEALCDDVISVLAVLCEKLQASINDSQQLQLLYLECILSVLSSSSSSMHLHRGFTDLIWKSLCPALVVILGNPIHDKTITSAHSTSTSTSMESDSASLGVSDHGRGSGCSCTAPTLSGPVARTIYYLAAELVRLVGSVDSMKPVLQSLYHRVLLYPPPQHRVEAIKIMKEILGSPQRLYDLAGPSSIESEPRKRSISKRKSHLDLLKLIMDGMTEACIKGGIEACYAAVSCVCTLLGALDELSQGKGLNDTQVQQLLLRLEELRDGAESSRDSMEINEADFRWQRRVLSSEHTPWESGNERSPDISISVTTDTGQTTLEGELGQTTPEDHKNGLKSPAIQEGKGTMGKVSEPEAIDQPDVVQRSHTVPYPDITNFLSVDCRTRSYGSRYSESNFSVDDQDLSRTEFDSCDQYSMAAEKDSGRSDVSDIGSDNCSLADEEQTPRDYIGHRSLRTAALSLKLLKNQEADQHSARLFIQSLEGLLPRLLALSSVEEVDSALQNFASTFCSGMMHSPGFDGGSSLSFQMLMNADSLYTAAHCALLLNLKLSHGDYYRKRPTVAPGMMKEFMKQVQTSGVLMVFSQAWLEELYHQVLDRNMLGEAGYWGSPEDNSLPLITMLTDIDGLESSAIGGQLMASASVESPFTQSRRLDDSTVAGVAFARYILVGCWKNLIDTLSTPLTGRMAGSSKGLAFILGAEGIKEQNQKERDAICMSLDGLRKAARLSCALGVAANCASALAQMAAASCVQEEKEERQSQEPSDALAQVKLKVEQKLEQMGKVQGVWLHTAHVLCMDAILSVGLEMGSHNPDCWPHVFRVCEYVGTLEHTHFSDGISQPPLTIHQPQKTSGSSGLLGEIEFKSSSQEQSLEQGPSLNTAPVVQPHSIQELVRECSRGRTSDFRGGSLSGNSAAKVVLSLSTQADRLFDDATDKLNLTALGGFLYQLKKASQSQLFHSVTDTVDYSLTMPGEVKSTQDQKSALHLFRLGDAMLRIVRSKARPLLHVMRCWSLVAPHLVEAACHKERHVSQKAVSFIHDILTEVLTDWSEPPHFHFNEALFRPFERIMQLELCDEDVQDQVVTSIGELVEVCSAQIQSGWRPLFSALETVRSGNKSEVKEYLVGDYSMGKGQAPVFDVFEAFLNTDNIQVFANAATSYIMCLMKFVKGLGEVDCKEIGDCVPGAGATSTDLCLPALDYLRRCSQLLAKIYKMPLKPIFLSGRLASLPRRLQEQSASSEDGIESVLSDFDDDTGLIEVWIILLEQLTAAVSNCPRQHQPPTLDLLFELLRDVTKTPGPGFGIYAVVHLLLPVMSLWLLRSHKDHSYWDVASANFKHAIGLSCELVVEHIQSFLHSDIRYESMINTMLKDLFELLVVCVAKPTETISRVGCSCIRYVLVTAGPVFTEEMWRLACCALQDAFSATLKPVKDLLGCFHGGTEGFSGEGCQVRVAAPSSSPSAEAEYWRIRAMAQQVFMLDTQCSPKTPNNFDHAQSCQLIIELPHDEKPNGHAKKSVSFREIVVSLLSHQVLLQNLYDILLEEFVKGPSPGEEKTVQVPDTKLAGFLRYISMQNLAVIFDLLLDSYRTAREFDTSPGLKCLLKKVSGIGGAANLYRQSAMSFNIYFHALVCAVLTNQETITAEQVKKVLFEEEERSSDSSQQCSSEDEDIFEETAQVSPPRGKEKRQWRARLPSLSVQPVSNADWVWLVKRLHKLCMELCNHYIQMHLDLESSLEEPLTFKSDPFFILPSFQSESSTPSTGGFSGKNTPSEDDRREHLSEPQSLRVGSGDMLMLPPSPKTEKKDPGRKKEWWESAGNKICTMAADKTISKLMTEYKKRRQPHNLPPFPKEVKVDKKGEPLGPRGPDSPLLQRPQHLIDQGQMRHSFSAGPELLRQEKRPRSGSTGSSLSVSVRDAEAQIQAWTNMVLTVLNQIQILPDQTFTALQPAVFPCISQLTCHVTDIRVRQAVREWLGRVGRVYDIIT", "sequence_length": 2170, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c058a92d396980ddac3fa182e14362c3f9eb80b17bf6a045043afa47ce296239", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UGY8.json", "taxon_id": "10090", "uniprot_accession": "Q3UGY8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mon2-c-terminal-ipr032817.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032817", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mon2-c-terminal-ipr032817.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mon2-sec7-big1-like-dimerisation-and-cyclophilin-binding-domain-ipr032629.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032629", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mon2-sec7-big1-like-dimerisation-and-cyclophilin-binding-domain-ipr032629.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mon2-sec7-big1-like-hds-ipr015403.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015403", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mon2-sec7-big1-like-hds-ipr015403.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mon2-sec7-big1-like-hus-domain-ipr032691.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032691", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mon2-sec7-big1-like-hus-domain-ipr032691.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sec7-like-hds-pf09324.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09324", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sec7-like-hds-pf09324.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/dcb-pf16213.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/dcb-pf16213.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/mon2-c-pf16206.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16206", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/mon2-c-pf16206.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/sec7-like-hus-pf12783.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12783", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/sec7-like-hus-pf12783.yaml" } ], "pfam_ids": [ "PF09324", "PF12783", "PF16206", "PF16213" ], "protein_name": "Protein MON2 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGTSSPEAVKKLLENMQSDLRALSLECKKKFPPVKEAAESGIIKVKTIAARNTEILAALKENSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSETAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERMVAEDERHRDIIEQPVLVQGNSNRRSVSTLKPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDADKPQWLRAVAVESIHRFCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPTGNPATSNQAGNNNLGGSVSAPANSGMVGIGGGVTLLPAFEYRGTWIPILTITVQGSAKATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITSMIEGELGELETECQTTTEEGSSPTQSTEQQDLQSTSDQMDKEIVSRAVWEEMVNACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAICKGSLPPHYALTVLNTTTAATLSNKSYSVQGQSVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSSGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEVCQHPNSRMREWGAEALTSLIKAGLTFNHDPPLSQNQRLQLLLLNPLKEMSNINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCTCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVVLNRPFHPAPPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSDKPETPPVVNVPVPVLIGPISGMSRPFVRTDSIGEKLGRYSSSEPPIVTDELEDLNLWWAAWNTWYRIGSESTKPPITFDKLTFIPSQPFLTALIQIFPALYQHIKTGFNMDDLQKLGVILHSAISVPISSDASPFILPSYTEAVLTSLQEAVLTALDVLQKAICVGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAPAEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKTLRVPLSLKYSCPSESTWKLAVSSLLRVLSIGLPVARQHASSGKFDSMWPELANTFEDFLFTKSIPPDNLSIQEFQRNENIDVEVVQLISNEILPYANFIPKEFVGQIMTMLNKGSIHSQSSSFTEAEIDIRLREEFSKMCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRQQVTEIIFVLKAVSTLIDSLKKTQPENVDGNTWAQVIALYPTLVECITCSSSEVCSALKEALVPFKDFMQPPASRVQNGES", "sequence_length": 1717, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc82e27008c9f491fd30c09addf7c230f8a5fc7b4b4bb87bd40f8782cd34d611", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Z3U7.json", "taxon_id": "9606", "uniprot_accession": "Q7Z3U7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mon2-c-terminal-ipr032817.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032817", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mon2-c-terminal-ipr032817.yaml" } ], "pfam_ids": [ "PF09324", "PF12783", "PF16206", "PF16213" ], "protein_name": "Protein MON2 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSCTNSPEAVKKLLENMQSDLRALSLECKKKFPPVKEAAESGIIKVKTIAARNTEILAALKENSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSETAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERMVAEDDRHRDIEPPVPIQGNSNRRSVSTLRPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDSDKPQWLRAVAVESIHRLCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPTGNPATANQAGNNNAGGPASAPANSGVVGVGGGVTLLPAFEYRGAWIPILTVTVQGSAKATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITTMIEGELGEVEAEGPSVTEGASSQSSERRDEQAASDPMDQETVSRAVWEEMVSACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAICKGSLPPHYALTVLNATTAATLSNKSYSIQGQSVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSSGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEKVCQHPNSRMREWGAEALTSLIRAGLTFSHEPPLPQNQRLQLLLLNPLKEMSNINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCSCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVSLNRPFHPAPPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSEKPEPPAVSVPVPVLLGNLSGPGLSRPFVRTDSIGEKLGRCGSETPVVTDELEDLKLWWAAWNTWHRTGSESTEPPSSVDELTFIPSQPFLTALVQIFPALYQHIKAGFSMADLQKLGVILHSAVSVPISSDASPFILPSYTEAVLTSLQEAVLTALDVLQKAICVGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAPAEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKTLRVPLSLKYSCPSESTWKLAVASLLKVLSIGLPVARQHASSGKFDSMWPELASTLEDFLFTKSIPPDNLSIQEFQRNESIDVEVVQLISAEILPYANLIPKAFVGQMMTMLNKGSIHSQPCSFTEAEIDIRLREEFSKMCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRQQVTEIIFVLKAVSTLIDSLKKTQPENVDGNTWSQVIALYPTLVECITCSSSDVGSALKEALAPFKDFMQPPASRVQNGES", "sequence_length": 1715, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2ec1ef400bf8c3ed2c75022467e49bc99c3229270f98e4b18a2e9f8d8e60da13", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q80TL7.json", "taxon_id": "10090", "uniprot_accession": "Q80TL7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-28-pf23325.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23325", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-28-pf23325.yaml" } ], "pfam_ids": [ "PF01369", "PF09324", "PF12783", "PF16213", "PF20252", "PF23325" ], "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASTEVDSRLGRVVIPALDKVIKNASWRKHSKLAHECKSVIERLRSPENSSPVADSESGSSIPGPLHDGGAAEYSLAESEIILSPLINASSTGVLKIVDPAVDCIQKLIAHGYVRGEADPTGGPEALLLSKLIETICKCHELDDEGLELLVLKTLLTAVTSISLRIHGDSLLQIVRTCYGIYLGSRNVVNQATAKASLVQMSVIVFRRMEADSSTVPIQPIVVAELMEPMDKSESDPSTTQSVQGFITKIMQDIDGVFNSANAKGTFGGHDGAFETSLPGTANPTDLLDSTDKDMLDAKYWEISMYKSALEGRKGELADGEVEKDDDSEVQIGNKLRRDAFLVFRALCKLSMKTPPKEDPELMRGKIVALELLKILLENAGAVFRTSDRFLGAIKQYLCLSLLKNSASNLMIIFQLSCSILLSLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPDFQQKMIVLRFLDKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGTVTTLLPPQEAAMKLEAMKCLVAVLRSMGDWVNKQLRLPDPYSAKMLEIVDRNLEEGSHPVENGKGDGGHGGFERSDSQSELSSGNSDALAIEQRRAYKLELQEGISIFNQKPKKGIEFLIKANKVGDSPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFEFQGMEFDEAIRAFLRGFRLPGEAQKIDRIMEKFAERFCKCNPKDFSSADTAYVLAYSVILLNTDAHNPMVKSKMTADGFIRNNRGIDDGKDLPEEYLRALYERISRNEIKMKDDGLGPQQKQPTNSSRLLGLDTILNIVVPRRGDDMNMETSDDLIRHMQERFKEKARKSESVYYAASDVIILRFMVEVCWAPMLAAFSVPLDQSDDAVITTLCLEGFHHAIHVTSVMSLKTHRDAFVTSLAKFTSLHSPADIKQKNIEAIKAIVKLAEEEGNYLQDAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQTESGNSPLAKPNSVPAIKERAPGKLQYAASAMIRGSYDGSGVAGKASNTVTSEQMNNLISNLNLLEQVGDMSRIFTRSQRLNSEAIIDFVKALCKVSMDELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSDNLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVVVMRKSGAVEIRELIIRCVSQMVLSRVDNVKSGWKSMFMIFTTAAHDAHKNIVFLSFEMVEKIIRDYFPHITETETTTFTDCVNCLVAFTNCKFEKDISLQAIAFLQYCARKLAEGYVGSSLRRNPPLSPQGGKIGKQDSGKFLESDEHLYSWFPLLAGLSELSFDPRAEIRKVALKVLFDTLRNHGDHFSLALWERVFESVLFRIFDYVRQDVDPSEDDSTDQRGYNGEVDQESWLYETCSLALQLVVDLFVNFYKTVNPLLKKVLMLFVSLIKRPHQSLAGAGIAALVRLMRDVGHQFSNEQWLEVVSCIKEAADATSPDFSYVTSEDLMEDVSNEDETNDNSNDALRRRNRQLHAVVTDAKSKASIQIFVIQAVTDIYDMYRMSLTANHMLMLFDAMHGIGSNAHKINADLLLRSKLQELGSSLESQEAPLLRLENESFQTCMTFLDNLISDQPVGYNEAEIESHLISLCREVLEFYINISCSKEQSSRWAVPSGSGKKKELTARAPLVVAAIQTLGNMGESLFKKNLPELFPLIATLISCEHGSGEVQVALSDMLQTSMGPVLLRSCC", "sequence_length": 1750, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "13ae0a11054f6d22a02b1c5b1380b2140935c965edf771fbeb064f79a489366c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LPC5.json", "taxon_id": "3702", "uniprot_accession": "Q9LPC5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/mon2-c-pf16206.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16206", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/mon2-c-pf16206.yaml" } ], "pfam_ids": [ "PF01369", "PF09324", "PF12783", "PF16206", "PF16213", "PF20252" ], "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASSEADSRLSRVVTPALEKIVKNASWRKHSKLANECKAVIERLNSLQKSPPPSSSAATDSESESSVPGPLNDGGSIEYSLADSELIFSPLINACGTGLAKIIEPAIDCIQKLIAHGYIRGESDPSGGAESLLLFKLIDSVCKCHDLGDESIELPVLKTLLSAINSISLRIHGKCLLLVVRTCYDIYLGSKNVVNQTTAKASLIQILVIVFRRMEADSSTVPIQPIVVAELMEPLEKSDADGTMTQFVQGFITKIMQDIDGVLNPTMSGSGSGSGSGGQDGAYGTTTVETTNPTDLLDSTDKDMLDAKYWEISMYKSALEGRKGELTDGDAERDDDLEVQIENKLRRDACLVFRALCKLSMKAPPKESSADPQSMRGKILALELLKILLENAGAVFRTSEKFSADIKQFLCLSLLKNSASTLMIIFQLSCSIFISLVARFRAGLKAEIGVFFPMIVLRVVENVAQPNFQQKMIVLRFLDKLCLDSQILVDIFLNYDCDVNSSNIFERMVNGLLKTAQGVPPGTATTLMPPQEAAMKLEAMKCLVAILKSMGDWLNKQLRLPVSNSLNKSDVIEIDLGPGSPQLANGNADESADGSDTYSESSGGTSDALAIEQRRAYKLELQEGISLFNRKPTKGIEFLINAGKVGESPEEIAGFLKDASGLNKTLIGDYLGEREDLALKVMHAYVDSFDFRGMEFDEAIRTFLEGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADSAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPADYMRSLYERITKHEIKMKEDDLRLQQKQYANSNRMLGLDGILNIVIRKQWGDSYAETSDDLMKHMQEQFKEKARKSESTYYAATDVVILRFMIEACWAPMLAAFSVPLDQSDDLIVINICLEGFHHAIHATSLMSMKTHRDAFVTSLAKFTSLHSPADIKQRNIEAIKAILRLADEEGNYLQDAWEHILTCVSRFEQLHLLGEGAPPDATFFASKQNESEKSKQPKQYILPVLKRKGPGKSQYAATGVLRGSYDSMSLGGKGSKNVRQEQMSSIVSNLNLLEQVGEMNQVFSQSQKLNSEAIIDFVKALCKVSMDELRSPSNPRVFSLTKIVEIAHYNMNRIRLVWSSIWQVLSGFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMTPFVIVMRRSNDVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVFLSFEIIEKIIREYFPYITETETTTFTDCVNCLVAFTNNRFSKDISLSSIAFLRYCATKLAEGDLNSPSTNKYKGTSGKIPQSSLHSGKSGKQENGEIVNNNHLYFWFPLLSGLSELSFDPRPEIRKSALQIMFDTLRNHGHLFSLPLWEKVFESVLFPIFDYVRHSIDPSGEDESADQGSSGGEVDELDHDAWLYETCTLALQLVVDLFVKFYTTVNPLLEKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSDADGLFSEEKWLEVVSALKEAAKTTCPDFSYFLSEEYVARSQRSALNIQNSNAESAAPTATDGNEESQRTATHLYAAISDAKCRAAVQLLLIQAVMEIYNMYRPQLSAKNTLVLVDALHGVALHAHGINSNTILRSRLQELGPMTQMQDPPLLRLENESYQICLTFLQNLVADKTKKEEEEEEEEIESLLVNICQEVLNFYIETSSSAKKLQSESSRASEYRWRIPLGSGKRRELSARAPLIVATLQAMCTLDEASFEKNLKCLFPLLANLISCEHGSNEVQTALADMLGLSVGPVLLQWC", "sequence_length": 1793, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6b2703cf2323b25b3146936b876e486878f225b80793f45bd41b5296bad9680c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LZX8.json", "taxon_id": "3702", "uniprot_accession": "Q9LZX8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/cytoskeletal-regulatory-protein-binding-go0005519.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0005519", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/cytoskeletal-regulatory-protein-binding-go0005519.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mon2-c-terminal-ipr032817.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032817", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mon2-c-terminal-ipr032817.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mon2-sec7-big1-like-dimerisation-and-cyclophilin-binding-domain-ipr032629.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032629", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mon2-sec7-big1-like-dimerisation-and-cyclophilin-binding-domain-ipr032629.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mon2-sec7-big1-like-hds-ipr015403.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015403", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mon2-sec7-big1-like-hds-ipr015403.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sec7-like-hds-pf09324.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09324", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sec7-like-hds-pf09324.yaml" } ], "pfam_ids": [ "PF09324", "PF12783", "PF16206", "PF16213" ], "protein_name": "Protein MON2 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFVGGGGCGGQDVHKFVEALQADFKTLSLETKKKYPQIKEACEEAISKLCTAGSSQQNSVYYTVNQILYPLVQGCETKDLKIIKFCLGMMQRLITQQVVDQKGALYITNALWTLMENNIEEVKVLQTVTLLLTTNTVVHGDTLAKALVLCFRLHYAKNPTIVNTAGATIRQLVSLVFERVYLEKDSVSSLQQQQSSGSPAEGEGGNQDVQTFASDAFLLFQDLVQLVNADQPYWLLGMTEMTRTFGLELLEAVLTNFSAVFHESNDFRLLLKERVCALVIKLFSPNVKHRQLPAPSNGNAPVPAEKPYFPISMRLLRLVAILIQKYHTILVTECEIFLSLIIKFLDPDKPAWQRALALEVIHKLVTRSSLIAFFCKSYDLKNHATNIVHDMIAAMGSYIRYSLINASAMLNGQQNGVANSLTAMSGSNQCGFMFRGAYLPLVATYAPGVSKAVYLEMLDKIDASNIPDSYGISVGHAILLDMTRSIGGVIQRTPELHPSHNTAVITEEEHKPLCLQLVNSSWSALLSAFIPLVETSIDEATTENILKAMQNYAALCGMLEQLQPRDAFIMAMCRASFPPHYAMSIFANTTQSDGDLRCHTRSGSQDLSSQFINSCSGDAGDFRPQIVAVGTPLPSASLPHSVMQAPVMLTNKNLQCMRAILFLAHNNGGILGTSWHIVLQTLQHLVWILGLKPSTGGSLQAMPKPAVEANVGIQTAVMADLPVLSQMLSQLFESSQYLDDVALHHLIDALCKLSHEAMELAYANREPSLFAVAKLLETGLVNMPRIKVLWRPLTNHLLEVCQHRHIRMREWGVEAITYLVKSALQFKHKTPLKENMELQTMLLSPLSELSTVLHADVRQRQLDCVLQILNTAGEILSFGWPAIIEIIGAVNEHHGEPLIRTAFQCLQLVITDFLTVMPWRCLPLCISTAAKFGSQTQELNISLTAIGLMWNISDFFNQNQDKLMSTQLQDVSILPDFPGTVKMPQFDKLWMCLYAKLGELCVDLRPAVRKSAGQTLFSTISAHGSLLNPPTWQALVWQVLFPLLDNVRALSSSASNEKVDASGNILIHHSRNTAQKQWAETQVLTLSGVCRVFNTKRELLQMLGDFERAWSLILEFIQNAALSKNGEVSLAALKSLQEIMYHNTAERTERALKDPQTAQEQDEEIWTIAWNIWLSIGMESTKMSTSTSAKLQQQNSNGAETQEDFYIPSQAFLTALIQIFPAIFQHIQVKFTAADFDKFCTVLTNAVCIPVQTDAVPYIMSTVSDTLLTPLHDGILDCMELIQKEATKPDSHISQLIPAIFRQLLIFSKFACAPPTFQQSVEHKYAKSSGHYANNASVEVVSMNYIPFGEKSISICVKLYQTTATEDSVVQEQILHDIVKALRTPLAMKYKCLSSSTWKLAISSLISVLHTGLKVARAKPQHFASLWDDLADTLDKFLFPASVCTIEDRGLEEIVLDETIDCQVIELLRDEVLPHSHEMPHQFIMQIVVLLNKGSIHSASDTNICYESDWKLREIFAKTCFETLLQFSLLEDHANTNNNRLNANVLTAGAAGAGGKDFAGRLAVTALLHRFQEVLKRFNDDERQSGKCPLPRFRLSEISFVLKAIATLVVSMKKAPASKVNKPAWDQLIGLYPYLVDCTTTTSPEVSRSLREALLQYTDLLQAPRSCSAATSNDNVIQSNGQE", "sequence_length": 1684, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1cb0f2ea81b3a0395cc278674bd5aa405d43bf29f0ff6caf3f2811fff90084e1", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VLT1.json", "taxon_id": "7227", "uniprot_accession": "Q9VLT1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/big2-c-pf20252.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/big2-c-pf20252.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/dcb-pf16213.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/dcb-pf16213.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sec7-like-hds-pf09324.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09324", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sec7-like-hds-pf09324.yaml" } ], "pfam_ids": [ "PF01369", "PF09324", "PF12783", "PF16213", "PF20252" ], "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQESQTKSMFVSRALEKILADKEVKRPQHSQLRRACQVALDEIKAEIEKQRLGTAAPPKANFIEADKYFLPFELACQSKSPRVVSTSLDCLQKLIAYGHITGNAPDSGAPGKRLIDRIVETICSCFQGPQTDEGVQLQIIKALLTAVTSPHIEIHEGTILQTVRTCYNIYLASKNLINQTTAKATLTQMLNVIFTRMENQVLQEARELEKPIQSKPQSPVIQAAAVSPKFVRLKHSQAQSKPTTPEKTDLTNGEHARSDSGKVSTENGDAPRERGSSLSGTDDGAQEVVKDILEDVVTSAIKEAAEKHGLTEPERVLGELECQECAIPPGVDENSQTNGIADDRQSLSSADNLESDAQGHQVAARFSHVLQKDAFLVFRSLCKLSMKPLGEGPPDPKSHELRSKVVSLQLLLSVLQNAGPVFRTHEMFINAIKQYLCVALSKNGVSSVPDVFELSLAIFLTLLSNFKMHLKMQIEVFFKEIFLNILETSTSSFEHRWMVIQTLTRICADAQCVVDIYVNYDCDLNAANIFERLVNDLSKIAQGRSGHELGMTPLQELSLRKKGLECLVSILKCMVEWSKDLYVNPNHQTSLGQERLTDQEIGDGKGLDMARRCSVTSMESTVSSGTQTTVQDDPEQFEVIKQQKEIIEHGIELFNKKPKRGIQFLQEQGMLGTSVEDIAQFLHQEERLDSTQVGDFLGDSARFNKEVMYAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLMEKFAARYIECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSSIYEEIEGKKIAMKETKELTIATKSTKQNVASEKQRRLLYNLEMEQMAKTAKALMEAVSHAKAPFTSATHLDHVRPMFKLVWTPLLAAYSIGLQNCDDTEVASLCLEGIRCAIRIACIFGMQLERDAYVQALARFSLLTASSSITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLELAQLIGTGVKTRYLSGSGREREGSLKGHTLAGEEFMGLGLGNLVSGGVDKRQMASFQESVGETSSQSVVVAVDRIFTGSTRLDGNAIVDFVRWLCAVSMDELASPHHPRMFSLQKIVEISYYNMNRIRLQWSRIWHVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKKNRSPTIRDMAIRCIAQMVNSQAANIRSGWKNIFAVFHQAASDHDGNIVELAFQTTCHIVTTIFQHHFPAAIDSFQDAVKCLSEFACNAAFPDTSMEAIRLIRFCGKYVSERPRVLQEYTSDDMNVAPGDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFEIMKSYGHTFEKHWWQDLFRIVFRIFDNMKLPEQLSEKSEWMTTTCNHALYAICDVFTQFYEALNEVLLSDVFAQLQWCVKQDNEQLARSGTNCLENLVISNGEKFSPEVWDETCNCMLDIFKTTIPHVLLTWRPVGMEEDSSEKHLDVDLDRQSLSSIDKNPSERGQSQLSNPTDDSWKGRPYANQKLFASLLIKCVVQLELIQTIDNIVFYPATSKKEDAEHMVAAQQDTLDADIHIETEDQGMYKYMSSQHLFKLLDCLQESHSFSKAFNSNYEQRTVLWRAGFKGKSKPNLLKQETSSLACCLRILFRMYVDENRRDSWEEIQQRLLTVCSEALAYFITVNSESHREAWTSLLLLLLTKTLKINDEKFKAHASMYYPYLCEIMQFDLIPELRAVLRKFFLRIGVVYKIWIPEEPSQVPAALSPVW", "sequence_length": 1785, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8d1c6d5acd99f3f5483207ead8c0701a7cb3052632ccc0ed380d631183fa8278", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y6D5.json", "taxon_id": "9606", "uniprot_accession": "Q9Y6D5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/big2-c-pf20252.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/big2-c-pf20252.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/dcb-pf16213.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/dcb-pf16213.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/sec7-like-hus-pf12783.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12783", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/sec7-like-hus-pf12783.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sec7-like-hds-pf09324.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09324", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sec7-like-hds-pf09324.yaml" } ], "pfam_ids": [ "PF01369", "PF09324", "PF12783", "PF16213", "PF20252" ], "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYEGKKTKNMFLTRALEKILADKEVKKAHHSQLRKACEVALEEIKAETEKQSPPHGEAKAGSSTLPPVKSKTNFIEADKYFLPFELACQSKCPRIVSTSLDCLQKLIAYGHLTGNAPDSTTPGKKLIDRIIETICGCFQGPQTDEGVQLQIIKALLTAVTSQHIEIHEGTVLQAVRTCYNIYLASKNLINQTTAKATLTQMLNVIFARMENQALQEAKQMEKERHRQHHHLLQSPVSHHEPESPQLRYLPPQTVDHISQEHEGDLDLHTNDVDKSLQDDTEPENGSDISSAENEQTEADQATAAETLSKNEVLYDGENHDCEEKPQDIVQNIVEEMVNIVVGDMGEGTTINASADGNIGTIEDGSDSENIQANGIPGTPISVAYTPSLPDDRLSVSSNDTQESGNSSGPSPGAKFSHILQKDAFLVFRSLCKLSMKPLSDGPPDPKSHELRSKILSLQLLLSILQNAGPIFRTNEMFINAIKQYLCVALSKNGVSSVPEVFELSLSIFLTLLSNFKTHLKMQIEVFFKEIFLYILETSTSSFDHKWMVIQTLTRICADAQSVVDIYVNYDCDLNAANIFERLVNDLSKIAQGRGSQELGMSNVQELSLRKKGLECLVSILKCMVEWSKDQYVNPNSQTTLGQEKPSEQEMSEIKHPETINRYGSLNSLESTSSSGIGSYSTQMSGTDNPEQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETKELTIPTKSSKQNVASEKQRRLLYNLEMEQMAKTAKALMEAVSHVQAPFTSATHLEHVRPMFKLAWTPFLAAFSVGLQDCDDTEVASLCLEGIRCAIRIACIFSIQLERDAYVQALARFTLLTVSSGITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLELAQLIGTGVKPRYISGTVRGREGSLTGTKDQAPDEFVGLGLVGGNVDWKQIASIQESIGETSSQSVVVAVDRIFTGSTRLDGNAIVDFVRWLCAVSMDELLSTTHPRMFSLQKIVEISYYNMGRIRLQWSRIWEVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKRNRSPTIRDMVVRCIAQMVNSQAANIRSGWKNIFSVFHLAASDQDESIVELAFQTTGHIVTLVFEKHFPATIDSFQDAVKCLSEFACNAAFPDTSMEAIRLIRHCAKYVSDRPQAFKEYTSDDMNVAPEDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFEIMKTYGHTYEKHWWQDLFRIVFRIFDNMKLPEQQTEKAEWMTTTCNHALYAICDVFTQYLEVLSDVLLDDIFAQLYWCVQQDNEQLARSGTNCLENVVILNGEKFTLEIWDKTCNCTLDIFKTTIPHALLTWRPNSGETAPPPPSPVSEKPLDTISQKSVDIHDSIQPRSVDNRPQAPLVSASAVNEEVSKIKSTAKFPEQKLFAALLIKCVVQLELIQTIDNIVFFPATSKKEDAENLAAAQRDAVDFDVRVDTQDQGMYRFLTSQQLFKLLDCLLESHRFAKAFNSNNEQRTALWKAGFKGKSKPNLLKQETSSLACGLRILFRMYMDESRVSAWEEVQQRLLNVCSEALSYFLTLTSESHREAWTNLLLLFLTKVLKISDNRFKAHASFYYPLLCEIMQFDLIPELRAVLRRFFLRIGVVFQISQPPEQELGINKQ", "sequence_length": 1849, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ff4b89c2e3ebaedbc4f39cf0b1195017cf88b3677fc50031b9253298a71554f9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y6D6.json", "taxon_id": "9606", "uniprot_accession": "Q9Y6D6", "uniprot_release": "2026_03" } ], "pfam_id": "PF09324", "short_name": "Sec7-like_HDS", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fer4-ndsu1-pf22151.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fer4-ndsu1-pf22151.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/complex1-75k-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00641", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/complex1-75k-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/complex1-75k-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00642", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/complex1-75k-2.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/complex1-75k-3.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00643", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/complex1-75k-3.yaml" } ], "pfam_ids": [ "PF00384", "PF09326", "PF10588", "PF13510", "PF22117", "PF22151" ], "protein_name": "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRIPVRKALVGLSKSSKGCVRTTATAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKTKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGSDRSRFLEGKRAVEDKNIGPLVKTIMTRCIQCTRCIRFASEIAGVDDLGTTGRGNDMQVGTYIEKMFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTEPMVRNEKGLLTHTTWEDALSRVAGMLQSFQGNDVAAIAGGLVDAEALIALKDLLNRVDSDTLCTEEVFPTAGAGTDLRSNYLLNTTIAGVEEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYRYDHLGDSPKILQDIASGSHPFSQVLQEAKKPMVILGSSALQRNDGAAILAAVSNIAQKIRTSSGVTGDWKVMNILHRIASQVAALDLGYKPGVEAIQKNPPKMLFLLGADGGCITRQDLPKDCFIVYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDVEGANYFQQASELSKLVNQQLLADPLVPPQLTIKDFYMTDSISRASQTMAKCVKAVTEGAHAVEEPSIC", "sequence_length": 727, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "81b847765717d2fd9ccdc88ee634d1d0ccb0a0d9ce4f82dcc1c4a82199ab7814", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P15690.json", "taxon_id": "9913", "uniprot_accession": "P15690", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fer2-4-pf13510.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13510", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fer2-4-pf13510.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fer4-ndsu1-pf22151.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fer4-ndsu1-pf22151.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fer4-nqo3-pf22117.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22117", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fer4-nqo3-pf22117.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/complex1-75k-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00641", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/complex1-75k-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/complex1-75k-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00642", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/complex1-75k-2.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/complex1-75k-3.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00643", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/complex1-75k-3.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nadh-dhqg-c-pf09326.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09326", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nadh-dhqg-c-pf09326.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P28331", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00384", "PF09326", "PF10588", "PF13510", "PF22117", "PF22151" ], "protein_name": "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "30b80fc412ae4a00d34b36e76c2805470bff1ac8c20265f97908ef18ec521ca7", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLRIPVRKALVGLSKSPKGCVRTTATAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGNDRSRFLEGKRAVEDKNIGPLVKTIMTRCIQCTRCIRFASEIAGVDDLGTTGRGNDMQVGTYIEKMFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTEPMVRNEKGLLTYTSWEDALSRVAGMLQSFQGKDVAAIAGGLVDAEALVALKDLLNRVDSDTLCTEEVFPTAGAGTDLRSNYLLNTTIAGVEEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYTYDHLGDSPKILQDIASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAVSSIAQKIRMTSGVTGDWKVMNILHRIASQVAALDLGYKPGVEAIRKNPPKVLFLLGADGGCITRQDLPKDCFIIYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLADPLVPPQLTIKDFYMTDSISRASQTMAKCVKAVTEGAQAVEEPSIC", "sequence_length": 727, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "30b80fc412ae4a00d34b36e76c2805470bff1ac8c20265f97908ef18ec521ca7", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P28331.json", "taxon_id": "9606", "uniprot_accession": "P28331", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fer4-ndsu1-pf22151.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fer4-ndsu1-pf22151.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fer4-nqo3-pf22117.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22117", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fer4-nqo3-pf22117.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/complex1-75k-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00641", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/complex1-75k-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/complex1-75k-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00642", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/complex1-75k-2.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/complex1-75k-3.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00643", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/complex1-75k-3.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nadh-dhqg-c-pf09326.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09326", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nadh-dhqg-c-pf09326.yaml" } ], "pfam_ids": [ "PF00384", "PF09326", "PF10588", "PF13510", "PF22117", "PF22151" ], "protein_name": "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRIPIKRALIGLSNSPKGYVRTTGTAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGSDRSRFLEGKRAVEDKNIGPLVKTIMTRCIQCTRCIRFASEIAGVDDLGTTGRGNDMQVGTYIEKMFMSELSGNVIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTEPMVRNEKGLLTYTSWEDALSRVAGMLQNFEGNAVAAIAGGLVDAEALVALKDLLNKVDSDNLCTEEIFPTEGAGTDLRSNYLLNTTIAGVEEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYRYDHLGDSPKILQDIASGRHSFCEVLKDAKKPMVVLGSSALQRDDGAAILVAVSNMVQKIRVTTGVAAEWKVMNILHRIASQVAALDLGYKPGVEAIRKNPPKMLFLLGADGGCITRQDLPKDCFIVYQGHHGDVGAPMADVILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGITLPYDTLDQVRNRLEEVSPNLVRYDDIEETNYFQQASELAKLVNQEVLADPLVPPQLTIKDFYMTDSISRASQTMAKCVKAVTEGAQAVEEPSIC", "sequence_length": 727, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ade3c982d1f0946dc949b89a21b655b32c54cac045d28160e587e9293eedae6a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q91VD9.json", "taxon_id": "10090", "uniprot_accession": "Q91VD9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nadh-dhqg-c-pf09326.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09326", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nadh-dhqg-c-pf09326.yaml" } ], "pfam_ids": [ "PF00384", "PF09326", "PF10588", "PF13510", "PF22117", "PF22151" ], "protein_name": "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIRAPLVKALGALGSPTHQMASRAVRTSAMVAQTPAKAPEKIEVFVDDIPVQVVPGTTVLQAAAQIGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGWRIKTNSDLTRKAREGVMEFLLMNHPLDCPICDQGGECDLQDQAMAFGSDRSRFTDINYTGKRAVEDKDIGPLVKTIMTRCIHCTRCVRFASEIAGVDDLGTTGRGNDMQIGTYVEKLFLTELSGNVIDLCPVGALTNKPYSFVARPWEIRKVSSIDVLDAVGSNIVVSTRTNEVLRILPRENEDVNEEWLADKSRFACDGLKRQRLVAPMVRMPNGELQAVEWEGALIAVAKAIKAAGGQIAGISGQLADLEAQVALKDLLNRLGSEVVATEQGFIAGGTDNRANYLLNSTIAGLEEADAVLLVGTNPRYEAPLVNTRLRKAYVHNELQIASIGPKIDLSYDHENLGADAALVKDVCSGAHAFSKVLEGAKKPAIIIGADLLERADGAAIHATVAEYCKKLKKPNWNPFNVLQTNAAQVGALDVGYKAGAQTAVKAQPKVLFLLNADAGKVTREQLPKDCFVVYIGSHGDNGASIADAVLPGAAYTEKQGIYVNTEGRPQQTLPGVSPPGMAREDWKILRALSEVVGKPLPYDNLDELRNRLEDVAPHLTRLGQLEPAGDAGAAGTISKSIGGGAIDIKLKELRDYFMTDAISRASPTMAKCISAVNKQQRENEAKQSVAI", "sequence_length": 731, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b317271e1343b46ae5b0d4074ae79a1006581af12e4386e00007b3f5138f0856", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q94511.json", "taxon_id": "7227", "uniprot_accession": "Q94511", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/complex1-75k-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00641", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/complex1-75k-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/complex1-75k-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00642", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/complex1-75k-2.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/complex1-75k-3.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00643", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/complex1-75k-3.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nadh-dhqg-c-pf09326.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09326", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nadh-dhqg-c-pf09326.yaml" } ], "pfam_ids": [ "PF00384", "PF09326", "PF10588", "PF13510", "PF22117", "PF22151" ], "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGLGILASRTIRPASRLLQSQTSNFFLRTIVSKPELQSPESAAVSEPEPPTQILPPRNPVGGARVHFSNPEDAIEVFVDGYAVKVPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPIAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVAGVQDLGILGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKATETIDVSDAVGSNIRVDSRGPEVMRIIPRLNEDINEEWISDKTRFCYDGLKRQRLSDPMIRDSDGRFKAVSWRDALAVVGDIIHQVKPDEIVGVAGQLSDAESMMVLKDFVNRMGSDNVWCEGTAAGVDADLRYSYLMNTSISGLENADLFLLIGTQPRVEAAMVNARICKTVRASNAKVGYVGPPAEFNYDCKHLGTGPDTLKEIAEGRHPFCTALKNAKNPAIIVGAGLFNRTDKNAILSSVESIAQANNVVRPDWNGLNFLLQYAAQAAALDLGLIQQSAKALESAKFVYLMGADDVNVDKIPKDAFVVYQGHHGDKAVYRANVILPASAFTEKEGTYENTEGFTQQTVPAVPTVGDARDDWKIVRALSEVSGVKLPYNSIEGVRSRIKSVAPNLVHTDEREPAAFGPSLKPECKEAMSTTPFQTVVENFYMTNSITRASKIMAQCSAVLLKKPFV", "sequence_length": 748, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2a7086316bee62e8d9bc5acb1b90b14e5d575173e9c660f96a729e9503f551d7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FGI6.json", "taxon_id": "3702", "uniprot_accession": "Q9FGI6", "uniprot_release": "2026_03" } ], "pfam_id": "PF09326", "short_name": "NADH_dhqG_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage SECphi4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fniii-a-gpj-pf24801.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24801", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fniii-a-gpj-pf24801.yaml" } ], "pfam_ids": [ "PF09327", "PF13550", "PF24801" ], "protein_name": "Tip attachment protein J", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIVYDVTGHKGGGGKQHTPQETPDSLHSLAKIRILLALGEGEFEGITSASELRQRVYLDGTPIQNADLSENFPGARVEFRPGTQHQDVIHGFSAVESEQSVGVKLENGTPWVRQINDTSLDAVRVRIGIPALYTSEDNGDLVGGRIDYKIVVYTDNADPREFTFAAVGKTMSLYERDHRIELPPNVNTGWRVEVHRITADSTSAKVVNDIQVQSITEIIDARLRYPLTALLFVEFDAKAFQNIPRVSIKCKGRKVLIPNNYDPINHTYSGDWDGTFKRAWSDNPAWHWYDICITERFGLGRRIKPQMLNRYALYQIAQRCDQLVSDGNGGREIRFKNDMYIQSQTDAWTVLKDLAAIFAGMTWWGNQMLNIVSDQPVAAVSHTITNASVIDGRFDYASGSQKTRYSTFAVAYGNPKNHYDDAIATGQRVELVRRHKINRLDITAIGCTRESEAQRRGHWALISNQLDQQVSFKVGMEGLFFIPGSVVAIADTNISGGFETRGGRLLSDPGTRTVLNTDSEITFRPGDKFLVRTDSGNVETREIASVNGNKVTLKTALDADPIPDQPFCVDGDDIQLQKFRITDLEYDDSTSTFSVRGIEYNDSKYDAVDNGARLDPGIFTQVPDGVMKGPESVTITPSQISSQGQLITNVDIVFPPVKDAVVYEIQWRRTSLQNMAVQWGNDWVNIPRTASNGAHIPNVFSGNYQARVRAIGMGEISSPWVSSAITPVEGRLGGLNAPIITNAISGLHQILWKWNHNNAATDISYTELEVRKTGETEWKFLTNVPYPGAEYAQTSLEFGIYQQLRARVADKIGNLSDWSAPFEGQVSDKVDEYMKGLDDEFLTSEDGKRFQEAIDTVPQGIYEAMLTDAQQLFNARAEYKGIYAEIKVAYNVAADAHKAVAQLETLIGTRLDDAEAAIHTLQTAQSTQEQAFAQYQQTVAAKFSEQEAAIQQVQTATADVAGALAEYKTQVAAQFGQQSAAIEQKMTSSFNHAGGSATYSLKAGVTYNGTYYDAGMQLSVVTEGDAVKSSIAFKADQFYIMHPSNGSLSSAFIVDGGAVYIDTARIKDATINFAQITDTLQSNNYDGDTRGWRLGKDGTFINLGTGNGGGMKQTNTQISVKDGNGVLRVQIGEITGSW", "sequence_length": 1139, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c6dc6951b1db37b94a656b36c47c086a4fdfe93b85200a539d6134e7bc52c01c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A6M3YMB5.json", "taxon_id": "2729542", "uniprot_accession": "A0A6M3YMB5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage lambda", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fniii-a-gpj-pf24801.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24801", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fniii-a-gpj-pf24801.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-gpj-c-pf12421.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12421", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-gpj-c-pf12421.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-j-pf24421.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24421", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-j-pf24421.yaml" }, { "cited_uniprot_accession": "", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/smi1-knr4-pf09346.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09346", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/smi1-knr4-pf09346.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/knr4-smi1-like-domain-superfamily-ipr037883.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR037883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/knr4-smi1-like-domain-superfamily-ipr037883.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/smi1-knr4-like-3-40-1580-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.1580.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/smi1-knr4-like-3-40-1580-10.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P32566", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09346" ], "protein_name": "Cell wall assembly regulator SMI1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "efd7be25b6e01dfd4e45e0fc48e9c69d6d17000ceaf401d3a3ef137bee5509fc", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDLFKRKVKEWVYSLSTDDHYAEYNPDETPTFNMGKRLNSNNGQVNPSQMHLNSVDEEMSMGFQNGVPSNEDINIDEFTSTESNDGVSETLLAWRHIDFWTSEHNPDLNATLSDPCTQNDITHAEEDLEVSFPNPVKASFKIHDGQEDLESMTGTSGLFYGFQLMTLDQVVAMTQAWRNVAKNLNKRSQQGLSHVTSTGSSSSMERLNGNKFKLPNIPDQKSIPPNAVQPVYAHPAWIPLITDNAGNHIGVDLAPGPNGKYAQIITFGRDFDTKFVIAENWGEFLLSFANDLEAGNWYLVDDNDDYFSGDGELVFRDKKSNGPIQDYFEVLKRRTWIKYQENLRSQQQKSQPDTSLQEQKYVPASQKKVAAEQPSTLNAESIKGEDSGSADVQSVQDHESVKIVKTEPSEAETTTVNTESLGQAEHEIKADNVDIKQESERKEDEKQPKVEEKEHVENEHVTESAKKDDDVNKQTEEMNKKEENEIRSDDAKVEEAREEFENIAL", "sequence_length": 505, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "efd7be25b6e01dfd4e45e0fc48e9c69d6d17000ceaf401d3a3ef137bee5509fc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32566.json", "taxon_id": "559292", "uniprot_accession": "P32566", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/smi1-knr4-pf09346.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09346", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/smi1-knr4-pf09346.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/smi1-knr4-like-3-40-1580-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.1580.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/smi1-knr4-like-3-40-1580-10.yaml" } ], "pfam_ids": [ "PF09346" ], "protein_name": "Uncharacterized protein YnaB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDATFHFKDPASPQEISDIEQKLGVTFPNDYKEFLLQHNGMEMFDGIEILSLEGIIEYNEVQDFPEGYVLIGYHFDGRYVIDTNKSKNGLGYMLYLDSIDDIEDAINLDSNFEIWFDMLVSLNGTKYWEVNPNLQEYYKLVSE", "sequence_length": 144, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "09c78db1561e543a1ced2049d5bcb7fea8ea082dee1a71a51edf41b3d72473de", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P94480.json", "taxon_id": "224308", "uniprot_accession": "P94480", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/smi1-knr4-pf09346.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09346", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/smi1-knr4-pf09346.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9DC63", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04379", "PF09346", "PF12937" ], "protein_name": "F-box only protein 3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "401e5a048103556371da40e0910c7e72aae8d8fd334746e60cdfc81820be376a", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAAVEAETGLLTLESLPTDPLLLILSFVDYRDLINCCYVSRRLSQLSTHDPLWRRHCKKYWLISEEEKAGKSQCWRSLFIETYSDVGRYIDHYAAIKKAWRDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTAAGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFIIGATFTDWFTSYVNNVVSGGFPIIRDQIFRYIHDPECVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSRDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRIYEYTSCTTFSTTSGYMEGYYTFHFLYFKDKVFNVAIPRFHMACPTFRVSIARLEMGPDEYEEMEEEAEEEEEEENDDSADMDESDESDADENESDEGEGEARRRRVFDVPIRRRRCSRLF", "sequence_length": 480, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "401e5a048103556371da40e0910c7e72aae8d8fd334746e60cdfc81820be376a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DC63.json", "taxon_id": "10090", "uniprot_accession": "Q9DC63", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf525-pf04379.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04379", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf525-pf04379.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/smi1-knr4-pf09346.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09346", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/smi1-knr4-pf09346.yaml" } ], "pfam_ids": [ "PF04379", "PF09346", "PF12937" ], "protein_name": "F-box only protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKYWLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTAAGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFIIGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEYEEMEEEEEEEEEEDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF", "sequence_length": 471, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "510a392030fa3d8652c10d64479326fc4b62fbf5902e593b38dc5d851729983b", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UK99.json", "taxon_id": "9606", "uniprot_accession": "Q9UK99", "uniprot_release": "2026_03" } ], "pfam_id": "PF09346", "short_name": "SMI1_KNR4", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1989-ipr018959.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018959", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1989-ipr018959.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1989-pf09347.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09347", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1989-pf09347.yaml" } ], "pfam_ids": [ "PF09347" ], "protein_name": "Uncharacterized protein YcgI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTQQYIVEPKKGLGLKLKKGQILKVVDVEGQQVADFVAYHAKDFYEHLDQGATIDANHSIHVKVNDHLYSNLYKPMLTLIEDTVGKHDLLLPACRPDMNRLLYGKQKDEFQDTCYDNMNRALEQFGVPKPHMHYPFAIFMNTVLDEKGNLSVETPLSNAGDYVRLRAEMDLIVAFSSCPIEKGKCNGDSVTSIRVEVS", "sequence_length": 198, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0c64ba60c1e1b88fbc96284c1523f8420ab6900375e8f7b84b890ce8c045309b", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/O31473.json", "taxon_id": "224308", "uniprot_accession": "O31473", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1989-pf09347.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09347", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1989-pf09347.yaml" } ], "pfam_ids": [ "PF09347" ], "protein_name": "Uncharacterized protein C11D3.03c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTEISELASSSQKPEKTKYNLPKPLPAYYPHPGSPLYADKELYARIANAPKKLVGRHVCQPRTGLAVKIPQKSIFSIVVPEGPQVCDLNIWNFHNPRERFWAARTRQIHSAHVSTYDRLWSTLPYLRPLVTIIGDSLQARHDEWGGRVHDTLGTRCDPYIDKLISGKDNDLHCHSNLTRAIMPYGLTEFDVHDVLNVFQVTGLNEYDQYFMETCPATSKDYFQCFAEQDLLVAISACPGGDLSNWGWGEDATDVESSKMVDCCRPLAIEVYELEDEENSLKGWVPPQVVNYTGNHGLKAPSS", "sequence_length": 302, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "725b32f8d578e834fb2feaf50b00b71c2399025b9be7e92e579f49fc2f53385a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q10082.json", "taxon_id": "284812", "uniprot_accession": "Q10082", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": 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"ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/djc28-cd-pf09350.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09350", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/djc28-cd-pf09350.yaml" } ], "pfam_ids": [ "PF00226", "PF09350" ], "protein_name": "DnaJ homolog subfamily C member 28", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MINTVCMKTTRILRLHLTNASLIPPGIKMLSDPRSRMISTHESQKLREYYRLLNLDEGCSVDDVRESFHKLARQYHPDSGSSDADSATFIKIEEAYRNVLSHAIKRMHAGQDKAEDAAEDEEEGKFKYNTPQHRHYLSFEGVGFGTPSQREKQYRQFRADRATEQVMEYQRQKLQREFFANSITVKDVRQSKQQKITQAIERLVEDLIQESMAKGDFDNLSGKGKPLKKFSGCSYIDPMTHNLNRILIDNGYQPEWILMQKEIKDTIEQLREALLMSRKKLGNPLSPTEQKQWAQVCEQFQEKIRKLNKRINDFNLIVPILTRQKVHFDAQKEIIRVQEMYGAFVEANEVTEENQTDVSQGEESKTPRVKAGFLNWLNLWKSIKI", "sequence_length": 385, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1e644de223c9f9d9a614cfaafe75ff86c689ea39afae0ecddd94a48ad7f9bdf9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VCE1.json", "taxon_id": "10090", "uniprot_accession": "Q8VCE1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/dnaj-homologue-subfamily-c-member-28-conserved-domain-ipr018961.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018961", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dnaj-homologue-subfamily-c-member-28-conserved-domain-ipr018961.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/djc28-cd-pf09350.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09350", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/djc28-cd-pf09350.yaml" } ], "pfam_ids": [ "PF00226", "PF09350" ], "protein_name": "DnaJ homolog subfamily C member 28", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTMYVMMAQILRSHLIKATVIPNRVKMLPYFGIIRNRMMSTHKSKKKIREYYRLLNVEEGCSADEVRESFHKLAKQYHPDSGSNTADSATFIRIEKAYRKVLSHVIEQTNASQSKGEEEEDVEKFKYKTPQHRHYLSFEGIGFGTPTQREKHYRQFRADRAAEQVMEYQKQKLQSQYFPDSVIVKNIRQSKQQKITQAIERLVEDLIQESMAKGDFDNLSGKGKPLKKFSDCSYIDPMTHNLNRILIDNGYQPEWILKQKEISDTIEQLREAILVSRKKLGNPMTPTEKKQWNHVCEQFQENIRKLNKRINDFNLIVPILTRQKVHFDAQKEIVRAQKIYETLIKTKEVTDRNPNNLDQGEGEKTPEIKKGFLNWMNLWKFIKIRSF", "sequence_length": 388, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "738cc4d995e348a205feae6e9b55df25fb75f4e0d3ba26bec859be0752b81c37", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NX36.json", "taxon_id": "9606", "uniprot_accession": "Q9NX36", "uniprot_release": "2026_03" } ], "pfam_id": "PF09350", "short_name": "DJC28_CD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09351", "short_name": "DUF1993", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1995-pf09353.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09353", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1995-pf09353.yaml" } ], "pfam_ids": [ "PF00406", "PF09353" ], "protein_name": "Probable adenylate kinase 5, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAASSSSSSPAAASAPFAAPGPHRRPGLALRPSPPTPPSSSLSCCRASPAAAAVSSVSATAAPNRGPRGMGLRCRASEGAAAAARKEAPLKVMISGAPASGKGTQCRMIVEKYGLVHISTGDLLRAEVSSGTEIGKKAKEYMDNGMLVPDQVVTDMVVSRLSQPDVRERGWLLDGYPRSYAQAQSLESMKIRPDIFIVLEVPDDILIDRCVGRRLDPETGKIYHIKNFPPENDEVSARLVTRSDDTFEKVKSRLDTYKQNSEAVIPTYSDLLNQIDGNRQVEVVFNEIDSLLQKICENASFNMLAKTNGKPQDSKDTTASKNEFRGIPTRLNNIPHSREIRKYFYNDVLVATRHAVEDKKTRLQIDINIPELNPEMDVYRIGTLMELVRELSLSFADDGKRVKVCVQGSMGQGAFAGIPLQLAGTRKILEIMDWGEYGAKGTFINFGAVGASEVDKEDDMFILIAPQNAVGNCIIDDMKAMTDAAGDRPVILVNPRLKDMPGSSGVMQTMGRDMRLKYAASFETCYSFRLLFYAGSFYPIMGALRMAYPNKYEIYRRVDEPNGQERYVLLEEFVEKPTPDEITNAFRPRKNENEKSASGFWGFLSGIL", "sequence_length": 608, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3d84a33f1b76a8bdd545510993156bf2db65ed4baa45a096e315c419a8a760f0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q0J6P7.json", "taxon_id": "39947", "uniprot_accession": "Q0J6P7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1995-ipr018962.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018962", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1995-ipr018962.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1995-pf09353.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09353", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1995-pf09353.yaml" } ], "pfam_ids": [ "PF09353" ], "protein_name": "Protein LPA3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAMAIAMLPALFSSPSILTSRIRCGATANSGGAISSTSSNSDPRRGVPLYKPKSYEVLATDAANSLAFALQDSKSRLEIDFPPLPSSISSYKGSSDDFIDANIQLAVTVVRKLQEKIETRACIVFPDKPEKRRASQRFKAAFDSVDGISIGSLDDIPGTSVTNFFRSIRSTLDFDFEDENEGTWEPKEPPTLYIFINCSTRELSFIEKFVETFASSTPALLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIPVFYIRTREYSKTVAVAPFVLNYNGALFRQYPGPWQVMLKQTDGSFACVAESPTRFTLGETKEELLQVLGLQEEKGSSLEFLRRGYKSATWWEEDVELEASSNWRN", "sequence_length": 358, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "180fc2e2ea86e20b8df59407f17a53ff58eacff0bcb4a88fcf69f37dfaf8fdb7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8H0W0.json", "taxon_id": "3702", "uniprot_accession": "Q8H0W0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1995-ipr018962.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018962", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1995-ipr018962.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1995-pf09353.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09353", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1995-pf09353.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/adenylate-kinase-active-site-lid-domain-superfamily-ipr036193.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036193", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/adenylate-kinase-active-site-lid-domain-superfamily-ipr036193.yaml" } ], "pfam_ids": [ "PF00406", "PF09353" ], "protein_name": "Adenylate kinase 5, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLSLSSAHFSSTSSSSRSSISTSSLSPSSTSLPLLQSPIRRRYRSLRRRLSFSVIPRRTSRSFSTSNSQIRCSINEPLKVMISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSSGTDIGKRAKEFMNSGSLVPDEIVIAMVAGRLSREDAKEHGWLLDGFPRSFAQAQSLDKLNVKPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNYPPESDEIKARLVTRPDDTEEKVKARLQIYKQNSEAIISAYSDVMVKIDANRPKEVVFEETQTLLSQIQLKRMIKTDKASPVQDKWRGIPTRLNNIPHSRDIRAYFYEDVLQATIRSIKDGNTRLRVDINIPELNPEMDVYRIGTLMELVQALALSFADDGKRVKVCVQGSMGEGALAGMPLQLAGTRKILEYMDWGDDETLGTFVKLGAIGGKEVDEEDDMFILVAPQNAVGNCIIDDLQAMTTAAGKRPVVLINPRLKDLPASSGIMQTMGREQRLEYALTFDNCYVFRLLYYLGTQYPIMGALRMSYPYRYELYKRVNEENGKEKYVLLATYAERPTPEQIDDAFSGKSRDQSKKASGIWGFLSSVFS", "sequence_length": 588, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "933ab5548e6590ec8880344591cf6f8be1430ca41fd4520653c416a831c3c503", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VYL1.json", "taxon_id": "3702", "uniprot_accession": "Q8VYL1", "uniprot_release": "2026_03" } ], "pfam_id": "PF09353", "short_name": "DUF1995", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09362", "short_name": "DUF1996", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09365", "short_name": "DUF2461", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Picosynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1997-pf09366.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09366", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1997-pf09366.yaml" } ], "pfam_ids": [ "PF09366" ], "protein_name": "Uncharacterized protein SYNPCC7002_A1590", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIRFQALEVVALSVPEAPRPIQEYLQDIDCLVGAIADPERTEKIAPDQYQLKMRPIGFLDLYKFQPIVTLKIWCDRHYQVHIKSLDYQLRGLEPFMKGFKLDVTGRLQPIADEQEQWLLEGEADLQVKLELPPPLWFTPKALVKKTGDRLLREILQRIKGQLLDQLVRDYQVWANGTRENSACGDRLETHP", "sequence_length": 192, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b2498891fd92468ced2fee7ec55b519df21f7958a173e329772d14a637c46b94", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P31525.json", "taxon_id": "32049", "uniprot_accession": "P31525", "uniprot_release": "2026_03" } ], "pfam_id": "PF09366", "short_name": "DUF1997", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus paralicheniformis (strain ATCC 9945a / NCIMB 11709 / CD-2)", "origins": [ { "cited_uniprot_accession": "P0DW06", "commit": "62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "TraitMech", "path": "data/traits/genomics/disarm_system.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "traitmech:000211", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/TraitMech/blob/62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b/data/traits/genomics/disarm_system.yaml" } ], "pfam_ids": [ "PF09369", "PF30764" ], "protein_name": "DISARM protein DrmB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSVNDSLVILDIKYWTNHNNKKIFDKNLMKFLKKDYFRKIPSTKHKDLPAIPFPNYHVCSNVKCSRLFDLRDNFVMSDYLKGGPKCPDCSRKSYPARFVVSCQENHLDDFPWRWWAHGKQDTECKGKLRLWSTGNTSSLDSLYVECECKKKKSLRGAMQDSSFENYKCTGNHPHKLNEKSNCNEPVIPLQRGASNVYFPALRSAIVIPSNASEDNNLDDFFTSVKEVINTYADLIGENWHYKFYSDRLTGHSEFSDAEDFIAKWTSYLNSNDSEEEIEYNQIKEAEYRAFTAFDRKVKMGDFEAEVETVPDDFQPYFNRIVKAHRLKEILVLLGFMRNDSPEPDVNEPKKIVWLESDGYENWLPAIEVHGEGIFIEFNHTTISKWLEENSELPKRSEKFSSLYASWIESKGWEVRDEKDIVYVMLHTFAHLLIKQLSLQSGYSSVAIKERIYCGKNMAGVLLYTGSTDQEGSLGGLVEMGSIDKLRPLIVDALEEAIFCSNDPSCASLEPSEDNQLNGCACFACSMVAETSCETGNRLLDRSLLVKTIDSKYSPFFKGLL", "sequence_length": 561, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c14ca52123010b00036d54640860c31fe5008a21de8720f0fc1d277271587b7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DW06.json", "taxon_id": "766760", "uniprot_accession": "P0DW06", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mzb-pf09369.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09369", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mzb-pf09369.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF09369", "PF22982" ], "protein_name": "Mitomycin repair factor A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKKSLTELISDLKGNENVVNWHEIEPREAKTRPMPESIDERIKAALSKRGIDELYTHQYSAFQYVQKGESIVTVTPTASGKTLCYNLPVLQSIAQDETNRALYLFPTKALAQDQKSELNEIIDEMGIDIKSFTYDGDTSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENLKYIVIDELHTYRGVFGSHVANVIRRLKRICRFYGSDPVFICTSATIANPKELGEQLTGKPMRLVDDNGAPSGRKHFVFYNPPIVNKPLNIRRSATAEVNELAKEFLKNKVQTIVFARSRVRVEIILSHIQELVKKEIGTKSIRGYRGGYLPKERREIERGLREGDILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHGESLIIMVANSTPIDQYIVRHPEYFFNRSPESARINPENLIILVDHLKCAAYELPFRADEEFGAMEVSDILEYLQEEAVLHRNGERYHWASESFPASNISLRSASQENVVIVDQSDIANVRIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDVEYYTDANLAVQLKVLEIDKTKEKSRTSLHYGDVTVNALPTIFKKIKMTTFENIGSGPIHLPEEELHTSAAWLEIKTADEDIGEKTLEQLLLGISNVLQHIVPVYIMCDRNDVHVVSQIKAAHTGLPTIFLYDHYPGGIGLAEEVFKRFSDINEAAKQLITHCPCHDGCPSCIGTEIEGIKAKERILQLLDQMS", "sequence_length": 749, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "01e11ffd2ad9b35c2bdf100641d203bf6feccaeb01a5ad147ee2f5541d1c84b5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P50830.json", "taxon_id": "224308", "uniprot_accession": "P50830", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mzb-pf09369.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09369", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mzb-pf09369.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q05549", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00270", "PF00271", "PF09369", "PF22982" ], "protein_name": "ATP-dependent helicase HRQ1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "9684182be69ed975b426f0b6b2537276452c7acebce6ed94cf2b8d3051bce6cb", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEEGPIKKKLKSAGQGSGKTDAFRNFEQFFFRLNTLYTFLICRKHVVPTFKTLCGPIETALKRTVTKEDLAMVMALMPRECVFKYIDENQIYTETKIFDFNNGGFQQKENDIFELKDVDDQNQTQKSTQLLIFEFIDGTMQRSWSASDRFSQIKIPTYTTEEMKKMISKREALFKSRLREFILEKEKANLDPFSELTNLAQKYIPRERDYEDPIEAMMKAKQESNEMSIPNYSNNSVITTIPQMIEKLKSTEFYASQIKHCFTIPSRTAKYKGLCFELAPEVYQGMEHENFYSHQADAINSLHQGENVIITTSTSSGKSLIYQLAAIDLLLKDPESTFMYIFPTKALAQDQKRAFKVILSKIPELKNAVVDTYDGDTEPEERAYIRKNARVIFTNPDMIHTSILPNHANWRHFLYHLKLVVVDELHIYKGLFGSHVALVMRRLLRLCHCFYENSGLQFISCSATLKSPVQHMKDMFGINEVTLIHEDGSPTGAKHLVVWNPPILPQHERKRENFIRESAKILVQLILNNVRTIAFCYVRRVCELLMKEVRNIFIETGREDLVTEVMSYRGGYSASDRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMCGFPLSMANFHQQSGRAGRRNNDSLTLVVASDSPVDQHYVAHPESLLEVNNFESYQDLVLDFNNILILEGHIQCAAFELPINFERDKQYFTESHLRKICVERLHHNQDGYHASNRFLPWPSKCVSLRGGEEDQFAVVDITNGRNIIIEEIEASRTSFTLYDGGIFIHQGYPYLVKEFNPDERYAKVQRVDVDWVTNQRDFTDVDPQEIELIRSLRNSDVPVYFGKIKTTIIVFGFFKVDKYKRIIDAIETHNPPVIINSKGLWIDMPKYALEICQKKQLNVAGAIHGAQHAIMGMLPRFIVAGVDEIQTECKAPEKEFAERQTKRKRPARLIFYDSKGGKYGSGLCVKAFEHIDDIIESSLRRIEECPCSDGCPDCVAASFCKENSLVLSKPGAQVVLHCILGHSEDSFIDLIKDGPEPNMPEIKVETVIPVSEHVNFSDDFKIIDVRRATKDDTHTNEIIKKEI", 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"cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2001-pf09393.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09393", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2001-pf09393.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/xkdm-like-superfamily-ipr038628.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038628", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/xkdm-like-superfamily-ipr038628.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/phage-tail-tube-protein-2-30-110-40.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.30.110.40", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/phage-tail-tube-protein-2-30-110-40.yaml" } ], "pfam_ids": [ "PF09393" ], "protein_name": "Uncharacterized protein YqbM", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALKAQNTISGKEGRLFLDGEEMAHIKTFEANVEKNKSEVNIMGRRMTGHKTTGANGTGTATFYKVTSQFVLIMMDYVKKGSDPYFTLQAVLDDASSGRGTERVTLYDVNFDSAKIAGLDVDSEALEEEVPFTFEDFDVPEQLKSTF", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e27d2064a69f6e153c0f3f8d49834267d90c599c01285c52b0ff209eb576dce6", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P45929.json", "taxon_id": "224308", "uniprot_accession": "P45929", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2001-pf09393.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09393", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2001-pf09393.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/xkdm-like-superfamily-ipr038628.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038628", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/xkdm-like-superfamily-ipr038628.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/phage-tail-tube-protein-2-30-110-40.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.30.110.40", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/phage-tail-tube-protein-2-30-110-40.yaml" } ], "pfam_ids": [ "PF09393" ], "protein_name": "Phage-like element PBSX protein XkdM", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALKAQNTISGKEGRLFLDGEEMAHIKTFEANVEKNKSEVNIMGRRMTGHKTTGANGTGTATFYKVTSKFVLLMMDYVKKGSDPYFTLQAVLDDQSSGRGTERVTLYDVNFDSAKIASLDVDSEALEEEVPFTFEDFDVPEKLSDTF", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "07ba82a1b5aeee28e87c358ba817b8f63dd1302753b8d977672dc9631d42bed5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54332.json", "taxon_id": "224308", "uniprot_accession": "P54332", "uniprot_release": "2026_03" } ], "pfam_id": "PF09393", "short_name": "DUF2001", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/duf2002-family-protein-nf007844.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007844", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/duf2002-family-protein-nf007844.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/duf2002-family-protein-nf007846.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2002-pf09400.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09400", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2002-pf09400.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf2002-3-90-1150-40.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.90.1150.40", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf2002-3-90-1150-40.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AD53", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09400" ], "protein_name": "Uncharacterized protein YgaC", 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"taxon_id": "83333", "uniprot_accession": "P0AD53", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2002-pf09400.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09400", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2002-pf09400.yaml" } ], "pfam_ids": [ "PF09400" ], "protein_name": "Uncharacterized protein YgaC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"CATH:1.10.3450.30", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-10-3450-30-1-10-3450-30.yaml" } ], "pfam_ids": [ "PF09404" ], "protein_name": "KICSTOR subunit 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGESIPLAAPVPVEQAVLETFFSHLGIFSYDKAKDNVEKEREANKSAGGSWLSLLAALAHLAAAEKVYHSLTYLGQKLGGQSFFSRKDSIRTIYTSLHNELKKVVAGRGAPGGTAPHVEELLPHLSEQLCFFVQARMEIADFYEKMYALSTQKFINTEELVSTLDTILRKYSSRFHHPILSPLESSFQLEVGVLSHLLKAQAQISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFGGQSQKAVQPPHLFLWLMKLKTMLLAKFSFYFHEALSRQTTASEMKALTAKANPDLFGKISSFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVMHWPNVIMIMTDRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSHFISFLNELSLALKNPKVFASLKPGSKG", "sequence_length": 445, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "640c0106a04571ee2d351290b360760b7f97d23dc605e883d391ff4db3da9cd2", "sequence_version": 1, 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"data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q96MD2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09404" ], "protein_name": "KICSTOR subunit 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "eaf5ee2fcd9b026434d8e50c58f79dc382eeb20ca425207896dd4d97023fc06d", "sequence_version": 5, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGESIPLAAPVPVEQAVLETFFSHLGIFSYDKAKDNVEKEREANKSAGGSWLSLLAALAHLAAAEKVYHSLTYLGQKLGGQSFFSRKDSIRTIYTSLHNELKKVVTGRGALGGTAPHVEELLSHLSEQLCFFVQARMEIADFYEKMYTLSTQKFINAEELVGLLDAIMKKYSSRFHHPILSPLESSFQLEVDVLCHLLKAQAQVSEWKFLPSLVNLHSAHTKLQTWGQIFEKQRETKKHLFGGQSQKAVQPPHLFLWLMKLKNMLLAKFSFYFHEALSRQTTASEMKTLTAKANPDFFGKISSFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVMHWPNVIMIMTDRTSDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVIIFESKKSERDSHFISFLNEVSLALKNPKVFASLKPGAKG", "sequence_length": 445, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "eaf5ee2fcd9b026434d8e50c58f79dc382eeb20ca425207896dd4d97023fc06d", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/Q96MD2.json", "taxon_id": "9606", "uniprot_accession": "Q96MD2", "uniprot_release": "2026_03" } ], "pfam_id": "PF09404", "short_name": "C12orf66_like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09406", "short_name": "DUF2004", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/abiei-1-pf09407.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09407", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/abiei-1-pf09407.yaml" } ], "pfam_ids": [ "PF09407" ], "protein_name": "Uncharacterized protein MT2308", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, 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"data/traits/sequence/domain/pfam/abiei-1-pf09407.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09407", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/abiei-1-pf09407.yaml" } ], "pfam_ids": [ "PF09407" ], "protein_name": "Uncharacterized protein Rv2248", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTRQQLDVQVKNGGLVRVWYGVYAAQEPDLLGRLAALDVFMGGHAVACLGTAAALYGFDTENTVAIHMLDPGVRMRPTVGLMVHQRVGARLQRVSGRLATAPAWTAVEVARQLRRPRALATLDAALRSMRCARSEIENAVAEQRGRRGIVAARELLPFADGRAESAMESEARLVMIDHGLPLPELQYPIHGHGGEMWRVDFAWPDMRLAAEYESIEWHAGPAEMLRDKTRWAKLQELGWTIVPIVVDDVRREPGRLAARIARHLDRARMAG", "sequence_length": 271, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "abb239a6126aa2fd1885182e3d234ee60bb1f443a20e75c7dcc24229a2e42d25", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLG5.json", "taxon_id": "83332", "uniprot_accession": "P9WLG5", "uniprot_release": "2026_03" } ], "pfam_id": "PF09407", "short_name": "AbiEi_1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09413", "short_name": "DUF2007", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/fancm-mhf-complex-go0071821.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071821", "section": "canonical_examples", "url": 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"MNISGTLNTLRLLYNPSLCKPSLVVPTFNDLPIPIHDSIKAVVLDKDNCIAFPHDDKIWPDYLQHWETLRSKYSNKALLIVSNTAGSNSDKDYSQAKLLEDKTGIPVLRHSTKKPGCHNEILDYFYRNKTITNPKEVAVVGDRLFTDILMANLMGSYGVWIRDGVKVSANPLSKFEKKLYNFLGF", "sequence_length": 185, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2f516abb5a78761175c2ad4fbbda175a67a46af74232c8272d7aa24b35dcfa3e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38812.json", "taxon_id": "559292", "uniprot_accession": "P38812", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/phosphatidylglycerophosphatase-activity-go0008962.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008962", "section": "canonical_examples", 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"data/traits/function/pathway/go/phosphatidylglycerol-biosynthetic-process-go0006655.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0006655", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/phosphatidylglycerol-biosynthetic-process-go0006655.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/phospholipid-dephosphorylation-go0046839.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0046839", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/phospholipid-dephosphorylation-go0046839.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/yqeg-family-had-iiia-type-phosphatase-tigr01668.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/yqeg-family-had-iiia-type-phosphatase-tigr01668.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/had-superfamily-hydrolase-subfamily-iiia-ipr006549.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/had-superfamily-hydrolase-subfamily-iiia-ipr006549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/had-iiia-family-hydrolase-tigr01662.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR01662", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/had-iiia-family-hydrolase-tigr01662.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pgp-phosphatase-pf09419.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09419", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pgp-phosphatase-pf09419.yaml" } ], "pfam_ids": [ "PF09419" ], "protein_name": "Phosphatidylglycerophosphate phosphatase 1, chloroplastic/mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQTPSMAASTTSYYPIPKSFLLSPPRHKRNPNLISCSTKPICSPPPPSSSSSSPLQTTTTHRSQKQNLRLPTFEDSFLLYQFSSPTEDPGFSNRIPEQFDGEPRELVLPRVEDNNKGLAISSNMWWADLKAALGQRINIEGIVSSVSVVVKDRQFVLPHVSVKDLRYIDWEVLKRKGFKGVVFDKDNTLTAPYSLAIWPPLRPSIERCKAVFGHDIAVFSNSAGLTEYDHDDSKAKALEAEIGIRVLRHRVKKPAGTAEEVEKHFGCTSSELIMVGDRPFTDIVYGNRNGFLTVLTEPLSRAEEPFIVRQVRRLELALLKRWLRKGLKPVDHSLVSDITQFVKVPSDL", "sequence_length": 348, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d25b1578c3a99de9d173e792f88037d263cbdf061ecf785c73d836652bad0e80", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LXR9.json", "taxon_id": "3702", "uniprot_accession": "Q9LXR9", "uniprot_release": "2026_03" } ], "pfam_id": "PF09419", "short_name": "PGP_phosphatase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2014-pf09427.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2014-pf09427.yaml" } ], "pfam_ids": [ "PF00010", "PF09427" ], "protein_name": "Transcription regulator srbA precursor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTPGIGGDFQLFSPLESTRRISQGNSLSVDQSSTDVASQDWTQWMRWDDEQAFPETANASPSSPFDLAFISPSASSGREASDAMHKDFSPDISLDFKSPSLGFFPGGDLNTNVSPQPDHVGAGSLSVHSNSPLSSIGASRKRKTGSDDDGSTMTSMFKAKQAPSKKRAHNVIEKRYRANLNEKIAELRDSVPSLRASYKQANGNSGDDDDDGVTSASKLNKASILSKATEYIRHLEIRNKRLEEENTALKIRLRQLDKAADQIVTSAASVSSPSDCTVSTESGASSSPSVFSHAEDVPSDHSPTSSHPPEGLIKVPDAWKRMRAAGSNESPYSQSYIQYKKTDSHSSQSGGGRMRSHLPNKYMLGALAGLMVLEGLGTEKKTESTAKGLLAVPLNLLNRVQLPSEVYSSAAFQYFWSSWHARAISHFLMLAILVVGSAFIVFVYLFNSDPRRQYSASKVAPDVTLSSCNFRRQAWLTSIQRVGVPRHRFFHEWYVVTSRCFEYVLRCLLGWKLYSLVTGVTEEDEKGRVKTWDIAIDAQLAGGDAEISKSRLVLTIFAAGTLPRSPMRMMLKALHCRILMWRVGEPGSWTFNVSNDVARSLARYQWDLARKMNAALPKDHPDSLPSHLATLLKIDCDDVMIDTIIQRAANLTWNRPTQEGTDDDEALLDVVEEDPAIQSSLDALAAWWSSHLLQGALLRYFEASSGGPDAKKSRNVFKSKIKLALDVAPQPSAAHTRALVMMAVFFERDRVANIGSVLAALPKEKGKNKQNQASNFLDSSLPISVREEISTAVRCAMIAAIFNARATGDTSLPATFTVEKAIHWFNRLPLDPVELTLLEFAAVYHLLHILASDIDYLASSDSSAPPSPMSKASDMLSSSSDDGEDGASQRNNNIIPHPMPNLGRVASELIYWARNAYNPAFYGFTSNLVKVIETECTSLCQTAGVHVADYSCVQEEKSKAKQAIDSKRRFAGGNEEASDNLLLSDES", "sequence_length": 988, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "12e12a3478982e34dd8a76c32aa69e76f3c1855269b9193275cbd46fce0ad3e2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4WIN1.json", "taxon_id": "330879", "uniprot_accession": "Q4WIN1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2014-pf09427.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2014-pf09427.yaml" } ], "pfam_ids": [ "PF00010", "PF09427" ], "protein_name": "Sterol regulatory element-binding protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQSSIPSVSVSVASPAMETPTKASPDSKSPNSVGAIPSSSPLASSTKASTSTPFVENCSNLLCDLASIVEDSPPTLTNTSLSPHSFSLSDMESSMSNWLNPFAFDNTMNSAPPLFTSTNMGSPNSLENSTNPLLSNCGSPNSFQNETFTGPSLNEFDADDKIQRQMKILHSVDTIDPSTVQNYPSADMSNPEVKLKTEEIITPMDTTCKPEPSAKKIKLSPSSEDSCSIPETLPFSAPKSRGSLSPSETPDFVAGPGGKPKKTAHNMIEKRYRTNLNDRICELRDAVPSLRAAAALRCGNSLDDEDLGGLTPARKLNKGTILAKATEYIRHLEAKNKELQKTNKQLSDRLAFYEDPSMAPPSNDTRAVNSVNVVSSSDYSVHQSSRPNLTQRAFTSPTLNTMGRTALNGMVGLGLFNYFGNDSSQSVYGLFALPPFLMSPFTGTVLFNMLKIGVVLLGLFYLLHDNSLFKGFKGEKKSKVSTRSSMSPSSILFRKTVFEKYCLLDHSTSTISLFFGLLIFTLKSAYGYLTHRLSALYTSSENWVYSEQQLAEVRNMEKLLDAQLMGGDAKVDRLRLLMVFASSFSLPPSSHTCALQAMYCQLIFSNTSVPSAIVSKCVAFFWNAAKKQHSKSSVHAELRELPECTANLIENSHADDVFSPNMVERLWVLAKCTRDSAQMSDSIISSLSDVLVLSPLEVLASWYAADLLDALLMESLSRKVEISEIEEIISLCPKNSSIIRHALLAKLVLFPENTADSLNEVLAAYKNTLDLCSQDKRKQSSVLKINLSKLFTLHSCLSLALQRLGYGDVSKRMYQEIFVPDSDADITPLSFIISWTALNTFAPICTSPKENDVVEKMAMYVRTAIGTLKIQDLKLSRKLINSCIDIGSRLQEDLGYVSSA", "sequence_length": 900, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7b5a983340d9b13d46c0ead81f2c62d553010cee93152c622460eb70d5d307cc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UUD1.json", "taxon_id": "284812", "uniprot_accession": "Q9UUD1", "uniprot_release": "2026_03" } ], "pfam_id": "PF09427", "short_name": "DUF2014", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2011-pf09428.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09428", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2011-pf09428.yaml" } ], "pfam_ids": [ "PF09428" ], "protein_name": "Uncharacterized protein YNL050C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEFKIVSRKDLYNEGEGLGEDYDSNSSSKNNSEHVEVLVPPTEFEFVEVERTDSSLDLKESNNSAHEQKEEKQEEFEFPLFSFGVVEASTSPAQEEQGSSTQEKDTPQTEVSLMKISLKEPEEEIINQERPKDYYFASYSADQKLQFQQSSIDYDVIIQESTKILEDDLRIRDKWPYCQGRIIDLYKHNARIELEQQKELKIKKRRPGQKQRAAKKLALERTKERDTKAREIKKQLKKKFHKRGGKKNKKKVPLNPLAKAGSTPKFRTE", "sequence_length": 270, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e9563127ffe83c3a2b7e731543ac752c702d27afbe33e3427cb45f0f417b7157", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53952.json", "taxon_id": "559292", "uniprot_accession": "P53952", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2011-pf09428.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09428", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2011-pf09428.yaml" } ], "pfam_ids": [ "PF09428" ], "protein_name": "Uncharacterized nucleolar protein C630.06c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METVKVTRKDLLLSPENKEIDSLDDVSALLSQRLSNVFEFSIASEEVQSDEVFEDTYPNDDQATFNLFSDVNTVVTKVTEPSIKNSRPLNYYILEDSPERQRQLQASVFTYDQLMKAKEEKWPACQKLHKVVSIKKEESKHRRRPSKKRRIRMKLLREKEEQLKRQAMAAKRNRFRKNVRKLPNKKKH", "sequence_length": 188, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "330b8bb83956e6e2ab07dbb43195e8419dd214a32c76bc1680c1956e936c358f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UUH6.json", "taxon_id": "284812", "uniprot_accession": "Q9UUH6", "uniprot_release": "2026_03" } ], "pfam_id": "PF09428", "short_name": "DUF2011", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/emc7-beta-sandw-pf09430.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09430", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/emc7-beta-sandw-pf09430.yaml" } ], "pfam_ids": [ "PF09430" ], "protein_name": "Endoplasmic reticulum membrane protein complex subunit 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAATLWAFFSVLLLLLSRDAQSSEVSGSTSDGSGGSGVGTGDRFKIEGRAVVPGVKPQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVISPAYRFDPVRVDITSKGKMRARYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLFSSKSSDKSSSGSSKTGKSGAGKRR", "sequence_length": 241, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aa103a003dc5dc37a6967f8453e6d69d595be633f77276f338b82812eae0caf3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5PJA8.json", "taxon_id": "9913", "uniprot_accession": "A5PJA8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/emc7-beta-sandw-pf09430.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09430", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/emc7-beta-sandw-pf09430.yaml" } ], "pfam_ids": [ "PF09430" ], "protein_name": "Endoplasmic reticulum membrane protein complex subunit 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPHIKRLLDVYIALQALFALSWGFSDPEPGPVAASQSNGDRFKIEGRAIVPGVKTQDWISTARVLVEGEEYVGFLKTDGSFAVNDVPSGSYVVEIVSPSFRFEPVRVDITSKGKMRARLVNYIKTSEVIRQPYPLQIRAGGPHTYFMKRETWGWTDFLMNPMVMMMVLPLLIIVLLPKVVNTNDPEMRKEMEQSMNMLNPNPELPDVSEFMTKLFSKGSSKSGGGNKGSRSVATKRR", "sequence_length": 237, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4ba274d67f0f01270756bc6250c97c0996dd98ff381c83f91c64adebb5e420f7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5TYV0.json", "taxon_id": "7955", "uniprot_accession": "Q5TYV0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/er-membrane-protein-complex-subunit-7-beta-sandwich-domain-ipr019008.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/er-membrane-protein-complex-subunit-7-beta-sandwich-domain-ipr019008.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/carbohydrate-binding-like-fold-ipr013784.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013784", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/carbohydrate-binding-like-fold-ipr013784.yaml" } ], "pfam_ids": [ "PF09430" ], "protein_name": "ER membrane protein complex subunit 7 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPIFRSTSLIAFSLFFFFFASTLPISSGSEDSYTITGRVRVPASTVIGHAAKFSNIKVILNGGQHVTFLRPDGYFTFHKVPAGTHLIEVYALGYFFSPVRVDVSARHRGKVQATLTETRRSLTELVLEPLRAEQYYEMREPFSVMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKSAQEQMRSQGVPSLTSLLPASR", "sequence_length": 202, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "41ab1635b5bcea23bf1c60401cb56f7d30e9049d8a3598ba91f5e1680960582d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VY97.json", "taxon_id": "3702", "uniprot_accession": "Q8VY97", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/er-membrane-protein-complex-subunit-7-beta-sandwich-domain-ipr019008.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/er-membrane-protein-complex-subunit-7-beta-sandwich-domain-ipr019008.yaml" } ], "pfam_ids": [ "PF09430" ], "protein_name": "ER membrane protein complex subunit 7 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSILLLFSLIVLGSATEEVSRTEQTSTLFSVEGEIALPSTRNCAKWSAGARIHLNHGQYMGFVRQDCTFRVDFVPTGTYIVQIENTDFVFEPIRVDITSKGKMRARKLTILQPNNVNTLPYPLRLSARGPARYFRKREEWRITDMLFSPMVLMLVVPLVVMLILPKMTANDPELKKEMENMQMPKVDMPDVGEMMANFFGGSAPAKKKAVTGGSGSGQRRK", "sequence_length": 222, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8a3c2c5a089a22fad2e05c665f001260d96d5e2bae01b404565a10a6d76d94e5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WQG1.json", "taxon_id": "6239", "uniprot_accession": "Q8WQG1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/er-membrane-protein-complex-subunit-7-beta-sandwich-domain-ipr019008.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/er-membrane-protein-complex-subunit-7-beta-sandwich-domain-ipr019008.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/carbohydrate-binding-like-fold-ipr013784.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013784", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/carbohydrate-binding-like-fold-ipr013784.yaml" } ], "pfam_ids": [ "PF09430" ], "protein_name": "Endoplasmic reticulum membrane protein complex subunit 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGALWGFFSVLLLLLSGDAHSSEVPGAAAEGPGGSGVGLGDRFKIEGRAVVPGVKPQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVISPAYKFDPVRVDITSKGKMRARYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLFSSKSSGKSSSGSSKTGKSGAGKRR", "sequence_length": 241, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2d65fba935ca97b4b11a520ed26c78e6acf2c3b3635dc4018786c360263ea388", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9EP72.json", "taxon_id": "10090", "uniprot_accession": "Q9EP72", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/er-membrane-protein-complex-subunit-7-beta-sandwich-domain-ipr019008.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/er-membrane-protein-complex-subunit-7-beta-sandwich-domain-ipr019008.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/emc7-beta-sandw-pf09430.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09430", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/emc7-beta-sandw-pf09430.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/carbohydrate-binding-like-fold-ipr013784.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013784", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/carbohydrate-binding-like-fold-ipr013784.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9NPA0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09430" ], "protein_name": "Endoplasmic reticulum membrane protein complex subunit 7", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "67459e00c3d701921d142480feaaf7698b98f661f20367ee2a3b4494841c1e98", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAAALWGFFPVLLLLLLSGDVQSSEVPGAAAEGSGGSGVGIGDRFKIEGRAVVPGVKPQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVVSPAYRFDPVRVDITSKGKMRARYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLFSSKSSGKSSSGSSKTGKSGAGKRR", "sequence_length": 242, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "67459e00c3d701921d142480feaaf7698b98f661f20367ee2a3b4494841c1e98", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NPA0.json", "taxon_id": "9606", "uniprot_accession": "Q9NPA0", "uniprot_release": "2026_03" } ], "pfam_id": "PF09430", "short_name": "EMC7_beta-sandw", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spin90-ldb17-leucine-rich-domain-ipr018556.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018556", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spin90-ldb17-leucine-rich-domain-ipr018556.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/spin90-lrd-pf09431.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/spin90-lrd-pf09431.yaml" } ], "pfam_ids": [ "PF09431" ], "protein_name": "Protein LDB17", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MILDPLSPNIENHTQDEIIEFWEKTESIANIPKENLDESHVNSSLVAYLKFATDSYKVFINTDRDLYRMSLILLESSLFEFKKEFCLSKLQSLLNIDLLEMNMKFIIVYILLCEAKKNVYSLEIMLKFQGFTVFYNTLYTQFAYLSKYGKERTVASKHQYNSNNSSTGTSLDSLDRSLTDIDLGIIDEMKQISTVLMDLLFQIMKYCKCVIANLQIVDDFFVYYMMESMRSDTMDDMFNNAEFKLLLALNEQYMMFAKEYDIENKVYKYLINGSVSRCFTELLLLKFNRASDPPLQIMMCKIIYLILTPRGDYSPMNFFYTNDLRVLIDVLIRELQNISEDEEVLRNTLLRVLIPLLKNTQLSKTHYRKDDLNKLLNYLSTLDNICVDSPALHEHQVTVALSRKCLQQIPWLETPSTPSDGGSSVSSNNTSRNSSIVALGTPDNQNILARKGHLYSNRELDVSAESLTKRKAKAPPPPPPPPPSRKCGTPK", "sequence_length": 491, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c87ba5d94cdb6e81389076946ffe24d9e1e8625e8b8e92e74d5f83ce61d69a48", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12342.json", "taxon_id": "559292", "uniprot_accession": "Q12342", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/src-homology-3-domain-of-sh3-protein-interacting-with-nck-90-kda-spin9-cd11849.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd11849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/src-homology-3-domain-of-sh3-protein-interacting-with-nck-90-kda-spin9-cd11849.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spin90-ldb17-leucine-rich-domain-ipr018556.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018556", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spin90-ldb17-leucine-rich-domain-ipr018556.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spin90-sh3-domain-ipr035514.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035514", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spin90-sh3-domain-ipr035514.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/spin90-lrd-pf09431.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/spin90-lrd-pf09431.yaml" } ], "pfam_ids": [ "PF00018", "PF09431" ], "protein_name": "NCK-interacting protein with SH3 domain", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYRALYAFRSAEPNAMAFAAGETFLVLERSSTHWWLAARARSGETGYVPPAYLHRLQGMEQDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGTSASSATVMTPSTSDHHLDAAVSRQPNGVCRTGFERQHSLPSSEHLGTDGALYQVPPQPRRAAPTTPPPPVKRRDREALVISGSGGRTAIPSGGSSVSSGSSASSTSMDTLYTGSSPSELGPSCSPTPPPVPRRGAHTTVSQPQPSPSKAPSPEPPTEEVAAETNSTPDDLEAQDALSPETTEEKAAAETVVPRTIGAELMELVRRNTGLSHELCRVAIGVVVGHIQATVPASSPIMEQVLLSLVEGKDLSTALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEDVIRCYLEELLHILTDADPEVCKKMCKRSDFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALVLAMVFSMGEAVPYAHYEHLGTPFAQFLLSIVEDGLPMDTTEQLPDLCMNLLLALNLHLTAPEQNVIMAALSRHTNVKIFSEKLLLLLNRGDDPVRIFRHEPQPPHSVLKFLQDVFSSSATAAIFYHTDMMALIDITVRQIADLSPGDKLRMEYLSLMHAVVRSTPYLQHRHRLSDLQATLRRILTEEEASPQCQMDRMIVQEMYKEFPDLGEVPS", "sequence_length": 714, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9412b267704190bfeeedffaf535ba50478ab78e26effed7b25f7303b77c03d29", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ESJ4.json", "taxon_id": "10090", "uniprot_accession": "Q9ESJ4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/src-homology-3-domain-of-sh3-protein-interacting-with-nck-90-kda-spin9-cd11849.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd11849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/src-homology-3-domain-of-sh3-protein-interacting-with-nck-90-kda-spin9-cd11849.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spin90-ldb17-leucine-rich-domain-ipr018556.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018556", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spin90-ldb17-leucine-rich-domain-ipr018556.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spin90-sh3-domain-ipr035514.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035514", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spin90-sh3-domain-ipr035514.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/spin90-lrd-pf09431.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/spin90-lrd-pf09431.yaml" } ], "pfam_ids": [ "PF00018", "PF09431" ], "protein_name": "NCK-interacting protein with SH3 domain", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYRALYAFRSAEPNALAFAAGETFLVLERSSAHWWLAARARSGETGYVPPAYLRRLQGLEQDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSASSVAVMTSSTSDHHLDAAAARQPNGVCRAGFERQHSLPSSEHLGADGGLYQIPLPSSQIPPQPRRAAPTTPPPPVKRRDREALMASGSGGHNTMPSGGNSVSSGSSVSSTSLDTLYTSSSPSEPGSSCSPTPPPVPRRGTHTTVSQVQPPPSKASAPEPPAEEEVATGTTSASDDLEALGTLSLGTTEEKAAAEAAVPRTIGAELMELVRRNTGLSHELCRVAIGIIVGHIQASVPASSPVMEQVLLSLVEGKDLSMALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEGVIRCYLEELLHILTDADPEVCKKMCKRNEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLNIVEDGLPLDTTEQLPDLCVNLLLALNLHLPAADQNVIMAALSKHANVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSVLKFLQDVFGSPATAAIFYHTDMMALIDITVRHIADLSPGDKLRMEYLSLMHAIVRTTPYLQHRHRLPDLQAILRRILNEEETSPQCQMDRMIVREMCKEFLVLGEAPS", "sequence_length": 722, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e849a8eefe3df1749af42a30527148648da5aea030f98302ba415e693800466c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NZQ3.json", "taxon_id": "9606", "uniprot_accession": "Q9NZQ3", "uniprot_release": "2026_03" } ], "pfam_id": "PF09431", "short_name": "SPIN90_LRD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2015-pf09435.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09435", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2015-pf09435.yaml" } ], "pfam_ids": [ "PF09435" ], "protein_name": "UPF0357 protein C1687.07", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASFHIIVSYVTVVLAIIIAITFAARRFWISRYRSIRYSPVENSFEADFNNGLNSSSFDIAQNILAQDTRAGLDEAATSQIRGLMKQLQCSFDQARLIYIRKVMSDNNVDSTGMPLDNKAVTKL", "sequence_length": 124, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea219bbf1c93acd3f76495b2e1e9c6b2d44d489b640039f44cfe5aaa6b663c27", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O14068.json", "taxon_id": "284812", "uniprot_accession": "O14068", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2015-pf09435.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09435", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2015-pf09435.yaml" } ], "pfam_ids": [ "PF09435" ], "protein_name": "UPF0357 protein AAL017W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFGLISLWHLFWLAVMAGILVVAHRNRETIRYKTSEFMVRLRSRFGGYTSINDHFVRDLEDGFSSQNFDLTSANSNDTRSGLDEASKQEIRRIMEEQGLGFDQARLVYTTRKFGAHGIAPDGMPLDPKVVTFRR", "sequence_length": 134, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c9b1ab92faf9f4376035218fe8f7597ad406e6f54e6c7edd867eb0a33d145b31", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q876Z1.json", "taxon_id": "284811", "uniprot_accession": "Q876Z1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2015-pf09435.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09435", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2015-pf09435.yaml" } ], "pfam_ids": [ "PF09435" ], "protein_name": "UPF0357 protein YCL012C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSLFYLKLLLWVVLLSLCLLMAHRKTKVADKFRALRSRIQLRFNRHIRLNDSFADDLENGLHSRNFDIISENSNDVRGGLDDVSKNEIKQIMENDNVDFDKARLLYMERKFGQNGIAPDGTPIDPKAFTFDSR", "sequence_length": 134, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "12e1d798bccc6172b9c3a5fb2c852d81df579d3d227f3ee56b2bf685aa1c7c59", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8J0M4.json", "taxon_id": "559292", "uniprot_accession": "Q8J0M4", "uniprot_release": "2026_03" } ], "pfam_id": "PF09435", "short_name": "DUF2015", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09436", "short_name": "DUF2016", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium leprae (strain TN)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2017-pf09438.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09438", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2017-pf09438.yaml" } ], "pfam_ids": [ "PF09438" ], "protein_name": "Putative oxidative stress regulator AosR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPVCGRRCSRTGEVRRYPGSFVRKWKRVETANGPRFRSVVAPHEVALLKHLVGALLGLLNERESSSPLDELEVITGIKAGNAQRPEDPTLRRLLPDFYTPDDKDQLDPAALDAVDSLNAALRSLHEPEIVDAKRSAAQQLLDTLPESDGRLELTEASANAWIAAVNDLRLALGVILEIDRPAPERVPAGHPLSVHFDVYQWLTVLQEYLVLALMAT", "sequence_length": 217, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f49ec89a477ab808ca175a705ef965410fe0a483130c9521df204a980302a468", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P53424.json", "taxon_id": "272631", "uniprot_accession": "P53424", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2017-pf09438.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09438", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2017-pf09438.yaml" } ], "pfam_ids": [ "PF09438" ], "protein_name": "Oxidative stress regulator AosR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPVCGRRCSRTGEIRGYSGSIVRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGHAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMGSR", "sequence_length": 218, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3bbfa2baade521710be2f31c7b2da4eba3c51f74d0c147d21e3ea434f5f29f2f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64810.json", "taxon_id": "233413", "uniprot_accession": "P64810", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2017-pf09438.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09438", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2017-pf09438.yaml" } ], "pfam_ids": [ "PF09438" ], "protein_name": "Oxidative stress regulator AosR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPVCGRRCSRTGEIRGYSGSIVRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGHAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMGSR", "sequence_length": 218, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3bbfa2baade521710be2f31c7b2da4eba3c51f74d0c147d21e3ea434f5f29f2f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM25.json", "taxon_id": "83332", "uniprot_accession": "P9WM25", "uniprot_release": "2026_03" } ], "pfam_id": "PF09438", "short_name": "DUF2017", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09442", "short_name": "DUF2018", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09449", "short_name": "DUF2020", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09450", "short_name": "DUF2019", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09493", "short_name": "DUF2389", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2462-pf09495.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09495", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2462-pf09495.yaml" } ], "pfam_ids": [ "PF09495" ], "protein_name": "Leydig cell tumor 10 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQGQRKFQAQKPKSKAAAAERSRGPRKGGRVIGPKKARVVQQQKLKKSLEVGIRKKIEHDVVMKASSSLPKKLALLKGASKKTGATPGKTPS", "sequence_length": 93, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "16ffdf80b2c04ca2675a06d623fbc5f0105b314b8a5adcdc61f3be2f0ad62e1c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q05310.json", "taxon_id": "10116", "uniprot_accession": "Q05310", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2462-pf09495.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09495", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2462-pf09495.yaml" } ], "pfam_ids": [ "PF09495" ], "protein_name": "Uncharacterized protein YLR363W-A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPQKPLKVTKKAKDPRRVTKKQKNLRKAAPLQLKSKKKSLQHLKKLKKSSSLTETTERLVASKVGHLELLRGTRKELEKGKKNSK", "sequence_length": 85, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "51fa6488e5bc13746b66358e5d6dd19a7bff74c7bde4dd15be16c9e824017414", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3E747.json", "taxon_id": "559292", "uniprot_accession": "Q3E747", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2462-pf09495.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09495", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2462-pf09495.yaml" } ], "pfam_ids": [ "PF09495" ], "protein_name": "Leydig cell tumor 10 kDa protein homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQGQRKFQAHKPAKSKTAAAASEKNRGPRKGGRVIAPKKARVVQQQKLKKNLEVGIRKKIEHDVVMKASSSLPKKLALLKAPAKKKGAAAATSSKTPS", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4cea777455c2705a17f63c308505c5a46b02ad8c31cb887b3764340c948a450f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UNZ5.json", "taxon_id": "9606", "uniprot_accession": "Q9UNZ5", "uniprot_release": "2026_03" } ], "pfam_id": "PF09495", "short_name": "DUF2462", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09498", "short_name": "DUF2388", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09523", "short_name": "DUF2390", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/yhev-family-putative-zinc-ribbon-protein-tigr02443.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR02443", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/yhev-family-putative-zinc-ribbon-protein-tigr02443.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2387-pf09526.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09526", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2387-pf09526.yaml" } ], "pfam_ids": [ "PF09526" ], "protein_name": "Uncharacterized protein YheV", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIRKRFIAGAKCPACQAQDSMAMWRENNIDIVECVKCGHQMREADKEARDHVRKDEQVIGIFHPD", "sequence_length": 66, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "002240e9f6ac86e3757a654d1069fd5f160cb2ef145561ee178f0f42c3babe19", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADW8.json", "taxon_id": "83333", "uniprot_accession": "P0ADW8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2387-pf09526.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09526", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2387-pf09526.yaml" } ], "pfam_ids": [ "PF09526" ], "protein_name": "Uncharacterized protein YheV", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIRKRFIAGAKCPACQAQDSMAMWRENNIDIVECVKCGHQMREADKEARDHVRKDEQVIGIFHPD", "sequence_length": 66, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "002240e9f6ac86e3757a654d1069fd5f160cb2ef145561ee178f0f42c3babe19", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADW9.json", "taxon_id": "199310", "uniprot_accession": "P0ADW9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2387-pf09526.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09526", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2387-pf09526.yaml" } ], "pfam_ids": [ "PF09526" ], "protein_name": "Uncharacterized protein YheV", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIRKRFIAGAKCPACQAQDSMAMWRENNIDIVECVKCGHQMREADKEARDHVRKDEQVIGIFHPD", "sequence_length": 66, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "002240e9f6ac86e3757a654d1069fd5f160cb2ef145561ee178f0f42c3babe19", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADX0.json", "taxon_id": "83334", "uniprot_accession": "P0ADX0", "uniprot_release": "2026_03" } ], "pfam_id": "PF09526", "short_name": "DUF2387", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09533", "short_name": "DUF2380", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09536", "short_name": "DUF2378", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09537", "short_name": "DUF2383", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09539", "short_name": "DUF2385", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09543", "short_name": "DUF2379", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09544", "short_name": "DUF2381", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09550", "short_name": "Phage_TAC_6", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2382-ipr019060.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019060", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2382-ipr019060.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/general-stress-protein-17m-like-domain-ipr025889.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025889", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/general-stress-protein-17m-like-domain-ipr025889.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/ysnf-avak-domain-containing-protein-tigr02271.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR02271", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/ysnf-avak-domain-containing-protein-tigr02271.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2382-pf09557.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09557", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2382-pf09557.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/yflt-pf11181.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11181", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/yflt-pf11181.yaml" } ], "pfam_ids": [ "PF09557", "PF11181" ], "protein_name": "Stress response protein YsnF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSIVGVYETPQETIAAIEGLLTKGYDSDDISVVTSRRDTDYLESRTGTEVNQAIDAHQDESESFFDKLKDYFTMDDTATHSKALSDLDIKTDEIDKYQEDLDDGKLLVAVDTDADVIAPIDNGNALSGGFSSTNELDYTTKEEKTMPLREEQLKVDKEDVQTGEVEIGKEVKTEKRDMDIPVRHDEIYVERRPVDENKTDAAPVNDSEEIRVPIVEEKLEVTKKPVVTDEVVVGKRTVEENEHISETVKKEEPRLNKEGKVDGLDDDPLNNK", "sequence_length": 273, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8444addc8c9cefcd78192e436c151a5139342aa6441486454994009c733df73e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P94560.json", "taxon_id": "224308", "uniprot_accession": "P94560", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2382-pf09557.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09557", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2382-pf09557.yaml" } ], "pfam_ids": [ "PF05239", "PF09557" ], "protein_name": "Uncharacterized protein DR_1314", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTQASLIRLSELNNDAQYNLNDTSMYNPVGAAAYGVNGDKIGTVRDALVEPETGRIRYFLVDVGGWFSSKEVLVPVGYGRVDDSGVYFDSLTKDQVKDMSEYRADQAYSSEMMDTDERVLRGNQSQEEYHQRAYQTPDRLQLLEERLVVNKDRFKAGSVQIGKRIETRQETVSVPLQREEVVIERHAVTDGRAVEGAVLGEGHQTMSVDLEAERANISKQAYVTEEVSVGKRAVTETQQVTETVGREVLDVNQTGDVRTTEGTALTDDTTKRNI", "sequence_length": 274, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c3085c951493b88ae3b60a3a6a3c65271a3217c601177dbfd54acc49d815c8c0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RUR8.json", "taxon_id": "243230", "uniprot_accession": "Q9RUR8", "uniprot_release": "2026_03" } ], "pfam_id": "PF09557", "short_name": "DUF2382", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09558", "short_name": "DUF2375", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09574", "short_name": "DUF2374", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Encephalitozoon cuniculi (strain GB-M1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2463-pf09591.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09591", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2463-pf09591.yaml" } ], "pfam_ids": [ "PF09591" ], "protein_name": "UPF0328 protein ECU05_1610/ECU11_0120", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTILGILNVQKLHTTSKHQENKDKPPETRRRGTINSILLAMSTVFPVFVFFTHREDGFDGNILLRFTTLVFPFSYSAAQHFLLLSSNWGSSCRSSSGLYRALCLALNALLAVFFVISICSLILFTADEWDDNEALTICSMLFPSLLLSSTCLLSISCNFATFQFVDSGPDIPIDLLIFLCLVILHKTSPLEDYEYLPYFAIPSFILVLVRSFKERLLPRKSSPPAAAWRVAVFLLILVLTISVYVFISRVCWAVIESKWEALTSD", "sequence_length": 266, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7e3065b1233490bb14dc9c19c485d28d4b9b0a6a3b66e05fd83fc0becd4595ff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8ST42.json", "taxon_id": "284813", "uniprot_accession": "Q8ST42", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Encephalitozoon cuniculi (strain GB-M1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2463-pf09591.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09591", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2463-pf09591.yaml" } ], "pfam_ids": [ "PF09591" ], "protein_name": "UPF0328 protein ECU01_0070/ECU01_1540/ECU02_1570/ECU04_0080/ECU08_2100", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNITHVPEIHRTDKQHTENLRHWRKILGIAPFVSIVFPAIMYFISDEDSFKKSLLLRFITILLPFSYSAVQYAILLHTTPYYTLNLLFLAFAAISILSITALPINEWKGDDSLIFSIVLPSLFIPPTYLLSTSCRLVPGQTAFTDTGINVLIDILILLCPLVSLVLVCKEPEYRLLSAVPFPILILARLLNDRYCPSEKSAPPTAPWRVAILVLILTSAALIYAFMMWTPIAILNGYFGLLHKLRESFLSLRPD", "sequence_length": 254, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "26b57a94dc2aa4c875d9848118dbcd31bf88b1b8f45ed0fa2f325236daa06a33", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8ST97.json", "taxon_id": "284813", "uniprot_accession": "Q8ST97", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Encephalitozoon cuniculi (strain GB-M1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2463-pf09591.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09591", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2463-pf09591.yaml" } ], "pfam_ids": [ "PF09591" ], "protein_name": "UPF0328 protein ECU05_1660/ECU11_0070", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNTHVPEPHETNEQRHPTNQSRSKVTYNGLASVISVALPIAMYFIFDKDRFKEDPLLRFATILLPFSYSATQYLFLLYANWKSNYKPEDTLHKALYYSFNALLIAFATISILSIVALPIDGWGSRNDIVIHSVILPFFVVWSAYLTFTINCLIMKTIRLTDVNFCMLIALMMMIRIIVEFKSSNREYRYYRQMPTPMFRDTFLPTIKRMVSILTTMLVLATFMYAFIAWKCLIFLRNM", "sequence_length": 239, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79e22e144697f2a1275617bc680d66dbbf2c80c369e0d971c012a11570948a82", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8STG4.json", "taxon_id": "284813", "uniprot_accession": "Q8STG4", "uniprot_release": "2026_03" } ], "pfam_id": "PF09591", "short_name": "DUF2463", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09592", "short_name": "DUF2031", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gt87-pf09594.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09594", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gt87-pf09594.yaml" } ], "pfam_ids": [ "PF09594" ], "protein_name": "Alpha-(1->3)-arabinofuranosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYCALVTATDSITTKLLNAFRPRTSAPSTATVLRSVLWPIAILSVIHRSYVLGTNGYITDDFGPVYRAVINFKLGLDIYNEQFDHVDPHYLYPPGGTLLLAPFGYLPVDASRYWYISFNVLAFLIAAYLMLRIFDYTLSSVAAPALVLAMFCTESVTNTLVFTNINGCMLLGAVLFFRWLLKGGRNAELLAGAAIGLTLVVKPSLAPLLLLPVLNRQFYTLITAFGVPLVFNIAAWPLVPDPMNFVRHTVPYIMSTRDYFNSSIVGNGIYYGLPMWLILLLRVVFLLLAVGSLWLLYRYYRERDPRFWLLTSSGVLLTASFLLLSLGQGYYSTMLFPFLMTVVLPNSVLRNWPAWLAIYGFMTMDRWLLGHWPTTGRFLEYMKITYGWSLMLVVVFCVLYFRYLDAKQDGRLDQGIDPPWMARERTPAPV", "sequence_length": 430, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb877e8cc0f9ef198192c61289de8fe26e1198805cf7faefeb84b3de74158f14", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0QW28.json", "taxon_id": "246196", "uniprot_accession": "A0QW28", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gt87-pf09594.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09594", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gt87-pf09594.yaml" } ], "pfam_ids": [ "PF09594" ], "protein_name": "Polyprenol-phosphate-mannose-dependent alpha-(1-2)-phosphatidylinositol mannoside mannosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLEMSKRQSPRGAGLAPTIAWRVFQLLTLAGVLWVGWRLLGRVPYRIDIDVYRMGGRAWLDGRPLYADGAIFHTQGGLDLPFTYPPLAAIAFAPFAWLSLPLASSAITATTLVLLIVATTIVLTRLDVWPHTTVTSEPAWMRRAWLAAAMVAPAVIYLEPIRSNFEFGQINVVLMTLVIADCVPRRTPWPRGLLLGLAIALKLTPAVFLLYFLLRRDIHTLLRTAATAVVASLAGFALAWSDSVEYWTETVRNTDRIGTATLNTNQNIAGALARLGLGESPRFILWVLACFAVLALTVWAARRALRGDTADQTTEAPVLALVCVALFGLVVSPVSWSHHWVWMLPVLVVTAVLAYRRRSVWFTALTAAGLALTVWTPITLLPEHRETTASLWRQLAGGSYVWWAFAVIVVIGLVSSSRTHTGDAHETDEPLVPLARGEAG", "sequence_length": 440, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b01d5a299a8982a450e046906a9c7a6dcf39942f688c28a6e27ba9135c49bd16", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0R036.json", "taxon_id": "246196", "uniprot_accession": "A0R036", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gt87-pf09594.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09594", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gt87-pf09594.yaml" } ], "pfam_ids": [ "PF09594" ], "protein_name": "Polyprenol-phosphate-mannose-dependent alpha-(1-2)-phosphatidylinositol pentamannoside mannosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRVNGYRGAKVGAVDTTSPPEVPASARLQRLAPMLLVVSILARLAWTYLVPNGANFVDLHVYVGGADALDGPGALYDYVYADQTPDFPLPFTYPPFAAIVFYPLHLLPFGVVAFIWQIGIIAALYGVVRVSQRLMGLQSQRRVAMLWTALGIWTEPLRSTFDYGQVNVVLVLAVLCAVSTTRWWLSGLLVGLAAGIKLTPAVAGLYFLGARRWAAVACSAAVFFATVGVSWLVVGAQARRYFTELLGDADRIGPIGTSFNQSWRGGISRILGHDAGFGPLVLIGIGITAVLALLAWRAIGGAQDRLGGILVVSLFGLVLSPISWTHHWVWLIPLMMWLLHGPLSALRGARILGWGWLALTLLGVPWLLSFAQPTIWEIGRPWYLAWAGLVYIVATLATLGWIAFSRKGSG", "sequence_length": 410, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ae7d11698095c1b66f8cd6a5736cf6b7f5957fd13b302668e2351516bacb0905", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A0R2K8.json", "taxon_id": "246196", "uniprot_accession": "A0R2K8", "uniprot_release": "2026_03" } ], "pfam_id": "PF09594", "short_name": "GT87", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09601", "short_name": "DUF2459", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09622", "short_name": "DUF2391", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09624", "short_name": "DUF2393", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09630", "short_name": "DUF2024", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09633", "short_name": "DUF2023", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09634", "short_name": "DUF2025", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09640", "short_name": "DUF2027", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09641", "short_name": "DUF2026", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09654", "short_name": "DUF2396", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09660", "short_name": "DUF2397", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09661", "short_name": "DUF2398", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09664", "short_name": "DUF2399", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/high-mobility-group-hmg-box-found-in-hmg-box-containing-protein-2-hbp2-cd21989.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd21989", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/high-mobility-group-hmg-box-found-in-hmg-box-containing-protein-2-hbp2-cd21989.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hmg-box-transcription-factor-bbx-domain-of-unknown-function-duf2028-ipr019102.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019102", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hmg-box-transcription-factor-bbx-domain-of-unknown-function-duf2028-ipr019102.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hmg-box-transcription-factor-bbx-hmg-box-domain-ipr049523.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049523", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hmg-box-transcription-factor-bbx-hmg-box-domain-ipr049523.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2028-pf09667.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09667", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2028-pf09667.yaml" } ], "pfam_ids": [ "PF00505", "PF09667" ], "protein_name": "HMG box transcription factor BBX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKGSNRNKDHSTEGEGDGKRPKRKCLQWHPLLAKKLLDFSEEEEEDEEEEDIDKVQLLEADGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRWCPTTNKPVKSPTPTVNPRKKLWAFPPDSSRDLPTPKKAKTEVPQLNFGMADPTQMGGLSMLLLAGEHALGTPEASSGTCRPDISESPELRQKSPLFQFAEISSRTSHPDAPSKQCQASALFQFAEISSSTSQLGGTEPVKRCGNSALFQLAEMCLASEGVKMEDTKLIKSKESDGGRIEEIEKGKEERGTEVEKTTETSFQKEAEFGKSAKGNVRESKDLRDIEQLQMDNVMAIKVEDPKEIRKEPEDDQKYSHFPDFSYSASSKIIISGVPSRKDHMCHPHGIMIIEDPTTLNKPEKIKKKKKKNKLDRHGNDKSTPKKTCKKRQSSESDIESVMYTIEAVAKGDWGVDKLGETPRKKVRPSSSGKGGILDAKPPKKKVKSKEKKVSKEKCSDITKESRPPDFLSISASKSVPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCHRKTETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWSEESWTFNQSGTSGSKKFKKKLREDSFLGSAKLDEEFEKKFNSLPQYSPITFDRKCVSTPRKKKKTGNMSSESTKTSKGSGDKWSHKQFFLDAIHPTEAIFSEDKSTTEPAFKVKNALSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTADGRVSPAGGTLDDKPKEQLQRSLPKVPGTYCGDNCSHSTVEEPRSSTPDMPAVSAFFSLAALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ", "sequence_length": 907, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4d5b1b8062bd944f1dfe34e6b2f09ac8430935a74af0fd13388f4260d0dcb2af", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VBW5.json", "taxon_id": "10090", "uniprot_accession": "Q8VBW5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/high-mobility-group-hmg-box-found-in-hmg-box-containing-protein-2-hbp2-cd21989.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd21989", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/high-mobility-group-hmg-box-found-in-hmg-box-containing-protein-2-hbp2-cd21989.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hmg-box-transcription-factor-bbx-domain-of-unknown-function-duf2028-ipr019102.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019102", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hmg-box-transcription-factor-bbx-domain-of-unknown-function-duf2028-ipr019102.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hmg-box-transcription-factor-bbx-hmg-box-domain-ipr049523.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049523", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hmg-box-transcription-factor-bbx-hmg-box-domain-ipr049523.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2028-pf09667.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09667", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2028-pf09667.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8WY36", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00505", "PF09667" ], "protein_name": "HMG box transcription factor BBX", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "801a93c6fd319b80bac3b45b9fcd797570a927d322b32ffe2b7c232634a1fe3f", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKGSNRNKDHSAEGEGVGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGADGLEQDVGETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRDLPSPKKAKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEVSSGTCRPDVSESPELRQKSPLFQFAEISSSTSHSDASTKQCQTSALFQFAEISSNTSQLGGAEPVKRCGKSALFQLAEMCLASEGMKMEESKLIKAKESDGGRIKELEKGKEEKEIKMEKTDETRLQKEAEFEKSAKENLRDSKELRNFEALQIDDIMAIKMEDPKEIRKEELEEDHKCSHFPDFSYSASSKIIISDVPSRKDHMCHPHGIMIIEDPAALNKPEKLKKKKKKSKMDRHGNDKSTPKKTCKKRQSSESDIESVIYTIEAVAKGDWGIEKLGDTPRKKVRTSSSGKGSILDAKPPKKKVKSREKKMSKEKSSDTTKESRPPDFISISASKNISGETPEGIKAEPLTPMEDALPPSLSGQAKPEDSDCHRKIETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEESWTFSQSGTSGSKKFKKTKPKEDCLLGSAKLDEEFEKKFNSLPQYSPVTFDRKCVPVPRKKKKTGNVSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQLFLDAIHPTEAIFSEDRNTMEPVHKVKNIPSIFNTPEPTTTQEPLVGSQKRKARKTKITHLVRTADGRVSPAGGTLDDKPKEQLQRSLPKATETDCNDKCSHNTEVGETRSSTPEMPAVSAFFSLAALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ", "sequence_length": 941, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "801a93c6fd319b80bac3b45b9fcd797570a927d322b32ffe2b7c232634a1fe3f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WY36.json", "taxon_id": "9606", "uniprot_accession": "Q8WY36", "uniprot_release": "2026_03" } ], "pfam_id": "PF09667", "short_name": "DUF2028", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09674", "short_name": "DUF2400", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mamf-mmsf-pf09685.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09685", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mamf-mmsf-pf09685.yaml" } ], "pfam_ids": [ "PF09685" ], "protein_name": "UPF0132 membrane protein MJ1443", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIFMGKTSLGLDENIEGALCYLFGVITGILFYILEKESKFVKFHAVQSIILFGGLWVLSIILAFIPYGWMLSGLVNLAAFILWIVCMYKAYKGEKFKLPVIGDIAEQYSQ", "sequence_length": 110, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1aa3afa4577be108ce44af614123fb402784803b96eccd99ca323ff8dd86129f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58838.json", "taxon_id": "243232", "uniprot_accession": "Q58838", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mamf-mmsf-pf09685.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09685", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mamf-mmsf-pf09685.yaml" } ], "pfam_ids": [ "PF09685" ], "protein_name": "UPF0132 membrane protein MJ1527", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIYLISKVFIKYHLFQNILKSYLLNFLVRLMALGLDRNMEGVLCYLLFWISGLIFLLLEREDDFIRFHAMQSFITFLSLNLIAIIVSAIPIIGWVASTLINIAIIILWIVGMIKAYNGERYKFPVFGDIAERYYREFLK", "sequence_length": 140, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f7989fcb18dd5cdf0667d1066bee61712822b69d50d3fafe2c82faffbe630dc4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58922.json", "taxon_id": "243232", "uniprot_accession": "Q58922", "uniprot_release": "2026_03" } ], "pfam_id": "PF09685", "short_name": "MamF_MmsF", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Plasmodium falciparum (isolate FC27 / Papua New Guinea)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dnaj-x-pf14308.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14308", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dnaj-x-pf14308.yaml" } ], "pfam_ids": [ "PF00226", "PF09687", "PF14308" ], "protein_name": "Ring-infected erythrocyte surface antigen", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRPFHAYSWIFSQQYMGTKNVKEKNPTIYSFDDEEKRNENKSFLKVLCSKRGVLPIIGILYIILNGNLGYNGSSSSGVQFTDRCSRNLYGETLPVNPYADSENPIVVSQVFGLPFEKPTFTLESPPDIDHTNILGFNEKFMTDVNRYRYSNNYEAIPHISEFNPLIVDKVLFDYNEKVDNLGRSGGDIIKKMQTLWDEIMDINKRKYDSLKEKLQKTYSQYKVQYDMPKEAYESKWTQCIKLIDQGGENLEERLNSQFKNWYRQKYLNLEEYRRLTVLNQIAWKALSNQIQYSCRKIMNSDISSFKHINELKSLEHRAAKAAEAEMKKRAQKPKKKKSRRGWLCCGGGDIETVEPQQEEPVQTVQEQQVNEYGDILPSLRASITNSAINYYDTVKDGVYLDHETSDALYTDEDLLFDLEKQKYMDMLDTSEEESVEENEEEHTVDDEHVEEHTADDEHVEEPTVADDEHVEEPTVADEHVEEPTVAEEHVEEPTVAEEHVEEPASDVQQTSEAAPTIEIPDTLYYDILGVGVNADMNEITERYFKLAENYYPYQRSGSTVFHNFRKVNEAYQVLGDIDKKRWYNKYGYDGIKQVNFMNPSIFYLLSSLEKFKDFTGTPQIVTLLRFFFEKRLSMNDLENKSEHLLKFMEQYQKEREAHVSEYLLNILQPCIAGDSKWNVPIITKLEGLKGSRFDIPILESLRWIFKHVAKTHLKKSSKSAKKLQQRTQANKQELANINNNLMSTLKEYLGSSEQMNSITYNFENINSNVDNGNQSKNISDLSYTDQKEILEKIVSYIVDISLYDIENTALNAAEQLLSDNSVDEKTLKKRAQSLKKLSSIMERYAGGKRNDKKSKNFDTKDIVGYIMHGISTINTEMKNQNENVPEHVQHNAEENVEHDAEENVEHDAEENVEHDAEENVEHDAEENVEHDAEENVEENVEEVEENVEENVEENVEENVEEVEENVEENVEENVEENVEENVEENVEENVEENVEENVEEYDEENVEEVEENVEENVEENVEENVEENVEEVEENVEENVEENVEENVEENVEENVEEYDEENVEEHNEEYDE", "sequence_length": 1073, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "62b4301593d2d3c2850daf0f1867628c4e6ab138f6ff60d3d5cccf4c4d630c04", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P13830.json", "taxon_id": "5837", "uniprot_accession": "P13830", "uniprot_release": "2026_03" } ], "pfam_id": "PF09687", "short_name": "PRESAN", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09722", "short_name": "Xre_MbcA_ParS_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", 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"sequence_sha256": "5852e0a0f761409a34271a8f67a18b921b16c283c1151178e6ae1dd272d1c579", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P25559.json", "taxon_id": "559292", "uniprot_accession": "P25559", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-dna-directed-dna-polymerase-activity-go1900264.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1900264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-dna-directed-dna-polymerase-activity-go1900264.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/post-translational-protein-acetylation-go0034421.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034421", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/post-translational-protein-acetylation-go0034421.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dcc1-pf09724.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09724", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dcc1-pf09724.yaml" } ], "pfam_ids": [ "PF09724" ], "protein_name": "Sister chromatid cohesion protein DCC1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSPPSASRRTREEVDATLQVAKLNATELLPTVHCLSFSSGTGGAATGDFCLLELEPALCQQLEAGDSFVIRGDKDEQAVLCSKDKTYDLKIADTSNMLLFIPGCKTPDQLKEEETPSAIVHTEIFGFSNNYWELRRCRPKLKKLKRLLMENTYEGPDSQKEEDASRSKYTTEDLLNHIQASEEEIMAQLQVLNACEIGGYWRILEFDYEIKLLNHVTQLVDSESWSLDRVPLTVCLQELGPLEPEEMIEHCLKCYGKRYVDKDDVYFELDADKICRVTAEMLLQNAVKFNLAEFQEVWQQSVPEGMTTRLDQLKGLALVDRNSRPEIIFLLKVDDLPEGTQDRFNSLFSLREKWTEEDITPYIQDLCGEKQTIGALLTKYSRSSMQNGIKVYNSRRLIS", "sequence_length": 399, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6527f54e1ef26b4b57c037dd91f46666534e2e2c0a5780f102abe79e46db5224", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q14AI0.json", "taxon_id": "10090", "uniprot_accession": "Q14AI0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/ctf18-rfc-like-complex-go0031390.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031390", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/ctf18-rfc-like-complex-go0031390.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-dna-directed-dna-polymerase-activity-go1900264.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1900264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-dna-directed-dna-polymerase-activity-go1900264.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/post-translational-protein-acetylation-go0034421.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034421", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/post-translational-protein-acetylation-go0034421.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dcc1-pf09724.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09724", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dcc1-pf09724.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9BVC3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09724" ], "protein_name": "Sister chromatid cohesion protein DCC1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3c5f03f37bf2d95cd061856b009785689b492e9252acafb11201945fe2712800", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKRTRDEVDATLQIAKLNAAELLPAVHCLGFGPGASGAAAGDFCLLELEPTLCQQLEDGHSLVIRGDKDEQAVLCSKDKTYDLKIADTSNMLLFIPGCKTPDQLKKEDSHCNIIHTEIFGFSNNYWELRRRRPKLKKLKKLLMENPYEGPDSQKEKDSNSSKYTTEDLLDQIQASEEEIMTQLQVLNACKIGGYWRILEFDYEMKLLNHVTQLVDSESWSFGKVPLNTCLQELGPLEPEEMIEHCLKCYGKKYVDEGEVYFELDADKICRAAARMLLQNAVKFNLAEFQEVWQQSVPEGMVTSLDQLKGLALVDRHSRPEIIFLLKVDDLPEDNQERFNSLFSLREKWTEEDIAPYIQDLCGEKQTIGALLTKYSHSSMQNGVKVYNSRRPIS", "sequence_length": 393, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3c5f03f37bf2d95cd061856b009785689b492e9252acafb11201945fe2712800", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BVC3.json", "taxon_id": "9606", "uniprot_accession": "Q9BVC3", "uniprot_release": "2026_03" } ], "pfam_id": "PF09724", "short_name": "Dcc1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/res-complex-go0070274.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070274", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/res-complex-go0070274.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/maintenance-of-rna-location-go0051237.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/maintenance-of-rna-location-go0051237.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bud13-pf09736.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09736", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bud13-pf09736.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P46947", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09736" ], "protein_name": "Pre-mRNA-splicing factor CWC26", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f445d68f235605ae6ec1f98579c9b7302b56387f9f5dc047203f1be816d3bfa7", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MALHQYLSETYGPTKPKNKTKKKKKESKSDANSDKTSLIVKERLSTLQQEQEKSGVASFSKFDKQKSKNIWKNLETNELSHAITHPSASSITGNESKNDLKEIRAQEPLVTVADKSKTRKTIYRDAQGHKIQEDSKIDDSSFSRSKYEDEKAAEREQYLKNLNMGDVQKLGINVDAHDKKKNQTASSLTIEDPAITFTHDKERTVKTSLLGRKLYDKPAPENRFAIMPGSRWDGVHRSNGFEEKWFAKQNEINEKKVQSYTLQEDY", "sequence_length": 266, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f445d68f235605ae6ec1f98579c9b7302b56387f9f5dc047203f1be816d3bfa7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P46947.json", "taxon_id": "559292", "uniprot_accession": "P46947", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bud13-pf09736.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09736", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bud13-pf09736.yaml" } ], "pfam_ids": [ "PF09736" ], "protein_name": "BUD13 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAPPLTKAEYLKRYLSGTDAGLEGGPEAGRKRRKKRPKPGGAGGKGMRIVDDDVGWAAISTAKPEKEEEEDGDLPVVAEFVDERPEEVKQMEAFRSSAKWKLLGGHGEDGHFHHDDQDSSPPRRVRHDTPDTSPPRKARHDTPDPSPPRKARHDTPDTSPPRKARHDTPDPSPPRKARHDTPDPSPPRRVRHDTPDLSPPRRVRHDTPDLSPPRRVRHDTPDPSPPRRVRHDLDASPPRKSHRNSSAVSPRRGHHGSLGTSSPRQTHNHSPTAAQHRRTLDSSGTQHLRRAHHESPDLELHKAKSSKAAERAPSKAASQSGLGPSHPSLSTNSKYEHDSDLSPPRKRQAKAHFEAKKQLDSKGVYQKASDSDLSPPRKKKNSGHQDSDSDLSPPRNRPRRQSSDSDLSPPRRRQRTKSSDSDLSPPRRSPRPGKKTAHMYSGAKTGLVTDVQREHQELKKQDQDTTDLGAQFEFTETVFRDKSGRKRNLKLERLEQRRKAEKDSERDELYAQWGKGLAQSRQQQQNVEDAMKEMQKPLARYIDDEDLDRMLREQEREGDPMANFIKKNKAKENKNKKVKPRYSGPAPPPNRFNIWPGYRWDGVDRSNGFEQKRFARLASKKAVEELAYKWSVEDM", "sequence_length": 637, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "23f20e94006f6b512db74379435a986532bca4c7c5530ab27ff8ec80c8ef7005", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R149.json", "taxon_id": "10090", "uniprot_accession": "Q8R149", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/res-complex-go0070274.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070274", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/res-complex-go0070274.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bud13-pf09736.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09736", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bud13-pf09736.yaml" } ], "pfam_ids": [ "PF09736" ], "protein_name": "BUD13 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAPPLSKAEYLKRYLSGADAGVDRGSESGRKRRKKRPKPGGAGGKGMRIVDDDVSWTAISTTKLEKEEEEDDGDLPVVAEFVDERPEEVKQMEAFRSSAKWKLLGGHNEDLPSNRHFRHDTPDSSPRRVRHGTPDPSPRKDRHDTPDPSPRRARHDTPDPSPLRGARHDSDTSPPRRIRHDSSDTSPPRRARHDSPDPSPPRRPQHNSSGASPRRVRHDSPDPSPPRRARHGSSDISSPRRVHNNSPDTSRRTLGSSDTQQLRRARHDSPDLAPNVTYSLPRTKSGKAPERASSKTSPHWKESGASHLSFPKNSKYEYDPDISPPRKKQAKSHFGDKKQLDSKGDCQKATDSDLSSPRHKQSPGHQDSDSDLSPPRNRPRHRSSDSDLSPPRRRQRTKSSDSDLSPPRRSQPPGKKAAHMYSGAKTGLVLTDIQREQQELKEQDQETMAFEAEFQYAETVFRDKSGRKRNLKLERLEQRRKAEKDSERDELYAQWGKGLAQSRQQQQNVEDAMKEMQKPLARYIDDEDLDRMLREQEREGDPMANFIKKNKAKENKNKKVRPRYSGPAPPPNRFNIWPGYRWDGVDRSNGFEQKRFARLASKKAVEELAYKWSVEDM", "sequence_length": 619, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fe2f58ab5c0d00d21d306407b7b4272c66dcc1e9ad8ed24c8afdd3d8fef67482", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BRD0.json", "taxon_id": "9606", "uniprot_accession": "Q9BRD0", "uniprot_release": "2026_03" } ], "pfam_id": "PF09736", "short_name": "Bud13", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/lrrfip-pf09738.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/lrrfip-pf09738.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-5-4090-1-20-5-4090.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.5.4090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-5-4090-1-20-5-4090.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q32MZ4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09738" ], "protein_name": "Leucine-rich repeat flightless-interacting protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "fab0add37ec894ba2f74b741765f80a0f47c8906e9d4b4be09e47734a52befc1", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTSPAAAQSREIDCLSPEAQKLAEARLAAKRAARAEAREIRMKELERQQKEEDSERYSRRSRRNTSASDEDERMSVGSRGSLRVEERPEKDFTEKGSRNMPGLSAATLASLGGTSSRRGSGDTSISIDTEASIREIKELNELKDQIQDVEGKYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLEKHGIILNSEIATNGETSDTLNNVGYQGPTKMTKEELNALKSTGDGTLGRASEVEVKNEIVANVGKREILHNTEKEQHTEDTVKDCVDIEVFPAGENTEDQKSSEDTAPFLGTLAGATYEEQVQSQILESSSLPENTVQVESNEVMGAPDDRTRTPLEPSNCWSDLDGGNHTENVGEAAVTQVEEQAGTVASCPLGHSDDTVYHDDKCMVEVPQELETSTGHSLEKEFTNQEAAEPKEVPAHSTEVGRDHNEEEGEETGLRDEKPIKTEVPGSPAGTEGNCQEATGPSTVDTQNEPLDMKEPDEEKSDQQGEALDSSQKKTKNKKKKNKKKKSPVPVETLKDVKKELTYQNTDLSEIKEEEQVKSTDRKSAVEAQNEVTENPKQKIAAESSENVDCPENPKIKLDGKLDQEGDDVQTAAEEVLADGDTLDFEDDTVQSSGPRAGGEELDEGVAKDNAKIDGATQSSPAEPKSEDADRCTLPEHESPSQDISDACEAESTERCEMSEHPSQTVRKALDSNSLENDDLSAPGREPGHFNPESREDTRGGNEKGKSKEDCTMS", "sequence_length": 808, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "fab0add37ec894ba2f74b741765f80a0f47c8906e9d4b4be09e47734a52befc1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q32MZ4.json", "taxon_id": "9606", "uniprot_accession": "Q32MZ4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/lrrfip-pf09738.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/lrrfip-pf09738.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-5-4090-1-20-5-4090.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.5.4090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-5-4090-1-20-5-4090.yaml" } ], "pfam_ids": [ "PF09738" ], "protein_name": "Leucine-rich repeat flightless-interacting protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSPEGAQNKEIDCLSPEAQRLAEARLAAKRAARAEAREIRMKELERQQKEVEERPDKDFAEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEKHGIILNSEIATNGETSDTVNDVGYQAPTKITKEELNALKSAGEGTLGKAKEVEVKKEIVEKVGQRETLQNSEQEQPKPNTGKDCVDRGVSHPGEKAENQRPAEDSALSPGPLAGAKCEQQVQSQDQENTSDLKNSEQIESHKVTNKSDSRASNSPEQSSCLEGLDSEVPGPTEDLKTDLGKGSFEPCPDYILGQTAEIDKVTCTDSRGTGGNQREDEVQAGDTTVEDQVGTVASGPAKQSKGTENHGESCLKDGLGQSSERELTQEVAEPEEAIVQIPQAGGENTITKADDAEGRDEKPIQAEAQASPGAPINQSGHQDTTGPGSTDAQRTPPHAKERKKQGKSEQQAEALDSPQKKTKNKKKKNKKKKAATPAETCRDANEELNCQDPDVGDMEEEERLQVTDKKQASGSPEQKIRAGSREPVEDPQSGSSGKQNKVEEDGPTEGPTDILDQNSPQCEDREISPVGEKGPQCDTSQIGSEEGHVTSQHGGQAVENHNLDNSDLSGQLEGFNSESGGQAREEVGNSKSKEDCTMS", "sequence_length": 729, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5bc5f6e08224ec3267d148052e0295106369fd20528dc5c471c8b081c18d5007", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UZ39.json", "taxon_id": "10090", "uniprot_accession": "Q3UZ39", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/myd88-dependent-toll-like-receptor-4-signaling-pathway-go0035660.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0035660", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/myd88-dependent-toll-like-receptor-4-signaling-pathway-go0035660.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/myd88-independent-toll-like-receptor-signaling-pathway-go0002756.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0002756", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/myd88-independent-toll-like-receptor-signaling-pathway-go0002756.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/lrrfip-pf09738.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/lrrfip-pf09738.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-5-4090-1-20-5-4090.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.5.4090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-5-4090-1-20-5-4090.yaml" } ], "pfam_ids": [ "PF09738" ], "protein_name": "Leucine-rich repeat flightless-interacting protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTPGSGRKRTPVKDRFSAEDEALSNIAREAEARLAAKRAARAEARDIRMRELERQQREGVEDTLSLRSLGSHRLDEKSDKQYAENYTRPSSRNSASATTPLSGQSSRRGSGDTSSLIDPDTSLSELRESLSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFYRENEEKSKELERQKHMCSVLQHKMDELKEGLRQRDELIEKHGLVIIPDSTPNGDVHHEPVVGAITAVSQEAAQVLESAGEGPLDVRLRKLAGEKDELLSQIRKLKLQLEEERQKCSRNDGMSGDLAGLQNGSDLQFIEMQRDANRQISEYKFKLSKAEQDIATLEQSISRLEGQVLRYKTAAENAEKIEDELKAERRKLQRELRTAQDKIEEMEMTNSHLAKRLEKMKANRTALLAQQ", "sequence_length": 415, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f471599656f64d9981778d42f1fb72aa077afca24f5d2cdad71579f54d113e08", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91WK0.json", "taxon_id": "10090", "uniprot_accession": "Q91WK0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/lrrfip-pf09738.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/lrrfip-pf09738.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-5-4090-1-20-5-4090.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.5.4090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-5-4090-1-20-5-4090.yaml" } ], "pfam_ids": [ "PF09738" ], "protein_name": "Leucine-rich repeat flightless-interacting protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTPASGRKRTPVKDRFSAEDEALSNIAREAEARLAAKRAARAEARDIRMRELERQQKEYSLHSFDRKWGQIQKWLEDSERARYSHRSSHHRPYLGVEDALSIRSVGSHRYDMFKDRSSRLSSLNHSYSHSHGMKKRSSDSHKDLLSGLYFDQRNYSSLRHSKPTSAYYTRQSSSLYSDPLATYKSDRASPTANSGLLRSASLASLYNGGLYNPYGPRTPSECSYYSSRISSARSSPGFTNDDTASIVSSDRASRGRRESVVSAADYFSRSNRRGSVVSEVDDISIPDLSSLDEKSDKQYAENYTRPSSRNSASATTPLSGNSSRRGSGDTSSLIDPDTSLSELRDIYDLKDQIQDVEGRYMQGLKELKESLSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEEKQRMQQKIDTMTKEVFDLQETLLWKDKKIGALEKQKEYIACLRNERDMLREELADLQETVKTGEKHGLVIIPDGTPNGDVSHEPVAGAITVVSQEAAQVLESAGEGPLDVRLRKLAGEKEELLSQIRKLKLQLEEERQKCSRNDGTVGDLAGLQNGSDLQFIEMQRDANRQISEYKFKLSKAEQDITTLEQSISRLEGQVLRYKTAAENAEKVEDELKAEKRKLQRELRTALDKIEEMEMTNSHLAKRLEKMKANRTALLAQQ", "sequence_length": 721, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bb512ee8770be7f6970b27aad4c9ff85e63f1e3260bb50fdc259bc7aca7173d5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y608.json", "taxon_id": "9606", "uniprot_accession": "Q9Y608", "uniprot_release": "2026_03" } ], "pfam_id": "PF09738", "short_name": "LRRFIP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mcm-bind-pf09739.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09739", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mcm-bind-pf09739.yaml" } ], "pfam_ids": [ "PF09739" ], "protein_name": "Mini-chromosome maintenance complex-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGGPAYDCLTNPLGAVRFSFVNALSSGYDPASSVGKDWGVVDLFRHYFSDESAISQVPILDSSSIKWVQPKTLVRFRGMIQDMLGNEFYAGAYKDDSTWRTNKYSDVSQFPEGSSTEIQVWERRLLYCVPVPGKNQWTECSSQELKNRFLDLTGQNREKRVRVDEEMTDSMDSSTLEAGRNGSPFKKMKVGEATSSASESQVPQTSGIPPATSADSLPCLVKIYDSPESDLKLNDVVEFLGVLTFDPIVMMDTDTLDENSDALSEAESVQMPSGKVPRLHCLIHRKLETQHFLHGSSLLPEPKSPQIFKEIRESLMKYLTGLLGNDHIAAQFLLLHLLSKVHGRVDNVAVGKLSLNLIHLNKESMSIFGTQLSGALKSLLPFTQSIPLTIEYLNTASFGPKKDYGINRLMPGVLQIADGTHLILDETELQPGTLNSVGVENANLLKNLLECQKVEYDFQYYKMEMATDVQMLIFSEGKSNIMPADLVLPLQPSQVNSLEVITPETAETWRCYLATCKSLSHSIGQELQQVVENDLVAARQTDRSLGSQDLSRLLTMARMMSVSYGETTLSLEHWQMVLELERLRKERLK", "sequence_length": 589, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4a6380d3eccb42cf8b1b9e00a0fb044a638da26f63f9ccd1f5377437cc9ad279", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q501D5.json", "taxon_id": "3702", "uniprot_accession": "Q501D5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mcm-bind-pf09739.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09739", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mcm-bind-pf09739.yaml" } ], "pfam_ids": [ "PF09739" ], "protein_name": "Mini-chromosome maintenance complex-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPCGEDWLSHPLGIVQGFFAQNGVNPDWEKKVIEYFKEKLKENNAPKWVPSLNEVPLHYLKPNSFVKFRCMIQDMFDPEFYMGIYETVNQNTKARVLHFGKYRDVAECGPQQELDLSSPRSTTSERQTFYCVPVPGESSWVKEAYVNANQARVSPSTSYTPSRHKRSYEDDEDMDLQPSKQKEQHPGSRQAGGLGGLHWCGEPKRLETEASSGQQLNTLNLSSPFDLNFPLPGEKGPACLVKVYEDWDCFKVNDVLELYGVLSVDPVLSVLNSEERDASALLDPMECTDMAEEQRVHSPPASLVPRIHVILAQKLQHINPLLPTCLNKEESRSCQFVSNFMSELSPVRAELLGFLTHALLGDSLAAEYLILHLISTVYTRRDVLPLGKFTVNLSGCPQNSTFTEHLYRIIQHLVPASFRLQMTIENMNQLKLIPHKDYTANRLVSGLLQLPNNTSLVIDETLLEQGQLDTPGVHNVTALSNLITWQKVDYDFSYHQMEFPCNINVLITSEGRSLLPADCQIHLQPQLIPPNMEEYMNGLLSAVLPSVLNKFRIYLTLLRFLDYNLSDDITKAVEDDFVEMRKDDPQSITADDLHQLLVVARFLSLSVGQTTLSRERWLRAKQLELSRKARLQQQKSVNGNEL", "sequence_length": 642, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "459991463d3cfa63e0b7723b212f3799335d50eda80bc82422a026e63db1986d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R3C0.json", "taxon_id": "10090", "uniprot_accession": "Q8R3C0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mcm-bind-pf09739.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09739", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mcm-bind-pf09739.yaml" } ], "pfam_ids": [ "PF09739" ], "protein_name": "Mini-chromosome maintenance complex-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPCGEDWLSHPLGIVQGFFAQNGVNPDWEKKVIEYFKEKLKENNAPKWVPSLNEVPLHYLKPNSFVKFRCMIQDMFDPEFYMGVYETVNQNTKAHVLHFGKYRDVAECGPQQELDLNSPRNTTLERQTFYCVPVPGESTWVKEAYVNANQARVSPSTSYTPSRHKRSYEDDDDMDLQPNKQKDQHAGARQAGSVGGLQWCGEPKRLETEASTGQQLNSLNLSSPFDLNFPLPGEKGPACLVKVYEDWDCFKVNDILELYGILSVDPVLSILNNDERDASALLDPMECTDTAEEQRVHSPPASLVPRIHVILAQKLQHINPLLPACLNKEESKTCKFVSSFMSELSPVRAELLGFLTHALLGDSLAAEYLILHLISTVYTRRDVLPLGKFTVNLSGCPRNSTFTEHLYRIIQHLVPASFRLQMTIENMNHLKFIPHKDYTANRLVSGLLQLPSNTSLVIDETLLEQGQLDTPGVHNVTALSNLITWQKVDYDFSYHQMEFPCNINVFITSEGRSLLPADCQIHLQPQLIPPNMEEYMNSLLSAVLPSVLNKFRIYLTLLRFLEYSISDEITKAVEDDFVEMRKNDPQSITADDLHQLLVVARCLSLSAGQTTLSRERWLRAKQLESLRRTRLQQQKCVNGNEL", "sequence_length": 642, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c3a8e8da61289200fa1b7b4574c163984a31262187236149f15665f680278b11", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BTE3.json", "taxon_id": "9606", "uniprot_accession": "Q9BTE3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mcm-bind-pf09739.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09739", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mcm-bind-pf09739.yaml" } ], "pfam_ids": [ "PF09739" ], "protein_name": "Mini-chromosome maintenance complex-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPCAMELPSTPDELAAQQADSAALKDLLKDPSRWHSIPLLNYTPLHKLKDQTLVRFRGMIQDMMDPEIYLERYEVKSADGSKRVQEGKYRDCLKIANGEVIDYNADGNVHGERRTMFVVSVPGLNDWSKEHEKLCCPQIDLASLGQSPSSAKKRTIVGEEEAMDVDVASETTFKRPCLKEIQKDSEPVGASKSSVLGSDYLINSPLPDRPSMACMVKVYEEFDTYQLNSLVDFVGFLSVDASLDAATLEIDDCENLSELQAAHPSPFLIPRLHAFGVQVLPHANPLLDKSLRQPTEICEETYPTHLAVHKDLRMLLKLCLFDDDLAAEYLLSHLISTVYSRSEMQSIGKFALNLCNLPKNCEAYATKLYQILELLLPASHYMPMTLVTLNTAAFAPKKDYETNKLVSGVLQLAPHTHLVLDETCMQQGKLEANGVHAVQHLAHLINNQELKCDFQYYQIDYQANIPVLVLSEGRSMLPSDFVLPINADSKAVELVDESLKAAHHYLQPSRLQQFRKYLTTARTSGFNVSEEHTEMIQQDFVDMRKANVKSNADDLHGLLVLSRLLGIARGKDTLDKETWQLATEFEAKRRQRIQSLPKSSAQLRN", "sequence_length": 605, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c10ab4f2d1a785b21004bf2919c4886e11a889a4787d8dd084a0a1eb8946c4d1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VM60.json", "taxon_id": "7227", "uniprot_accession": "Q9VM60", "uniprot_release": "2026_03" } ], "pfam_id": "PF09739", "short_name": "MCM_bind", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2043-pf09740.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09740", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2043-pf09740.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/uvssa-n-pf20867.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/uvssa-n-pf20867.yaml" } ], "pfam_ids": [ "PF09740", "PF20867" ], "protein_name": "UV-stimulated scaffold protein A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDQTMRDKLSQLVEELTTSGEPQLNQDKMKEVKKICRVSDSYIDHFYHLIMTQLNQEHAEIRLSAFQMVNEVFSRSHHFRVLLITNFQEFLELTVETDAEQPLPPPKEVARKLRTLAIQTVQSWHATYGEAYKKLSLGYHFLKQIKKVDFQDVEARTLAERKRQEEKQKRLERIYKEKLDKAKQEMEEMTSGIEETLTEMNNCIRLLATDDFNLFDEDSAASISTTAEDQSDQPCCSKDLSNEHNGKMMEKKTDKEQTDESSDESDMEEVPDEDAFLRSTGLMSYRYQLELDVSADLKVRETEENEALVNTVRDLHRLVTTRHLPLVQSWVQVFTKVGVEEELMRRATELKKSLEHVLRKHEYLHIDYKDRERLVMRAPEDGEDDDDDFVDVPEKEGYEPHIPEHLRTEYGLDETPSTSTSGTKAKPSRPVVKCAVPPVSSSLSRLKRRMCDEEQDPTCAAATLRVLKQKLHPAPSTSVPDGSSESAVSSSDQSNMTKNKASFKAPVIPFGMDLYYWGEEQPTAGKIIKQTSQHQFWVPHEVEEEVENKELSAQMKSRCITYAGKFKPVEHKCKAPMPNGSLCERQDRVKCPFHGHIIPRDELGRPVNPEDALRLEREKRKREEEQPDWRDPELMREIEAATGEDLGSSKTYGKGKKGNKGKSKKKYPNLTDLKQKANTSRSRLEKKVFNKSSMRRVTEVMNKMDKRKHEKFANQFNYALN", "sequence_length": 721, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "37da5f633a0cfe5108690f1ba19c933172db528c26cb89826563bf319c5af86c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/E7EXT2.json", "taxon_id": "7955", "uniprot_accession": "E7EXT2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2043-pf09740.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09740", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2043-pf09740.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/uvssa-n-pf20867.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/uvssa-n-pf20867.yaml" } ], "pfam_ids": [ "PF09740", "PF20867" ], "protein_name": "UV-stimulated scaffold protein A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDQKLSELVEELTTSGEPQLNPEKMKQLKKICKSSEEQLGHAYHLLMAQLSQEHAEIRLSAFQVLDQLFARSHQFRTLVVSNFQEFLELTLGTDHERPLPPPREVAQRLRQAATQAIRGWNEKYGAAYKKLALGFHFLKHSKQVDFQDVDARTVAERKRAEERQKRLDRIYKERSEWAAREMEEMSTEIRGCLTELESCFRLLLPFDLDLAPGAAWCPVPEKGDRDEEQPCCSKSLAACAHHPGAMDAGGPPSEDEDRDPDGFVRRHGLGSRQYTLDVELSSDSLRVRENEDNSAVIRAARDALRLIQNKLLPAACSWVQLFTRAGTYGGHLEGAIHLKAELEAALKRSRELDIVPEEGRSGETAAPGDEDEDEDDFVEVPEKEGYEACVPEHLRPECGEQRHGPGRGLEEGLAAPGSQARKRPGSDMEAFDPTSAAAQQQWPRPHGPPASPPSPRAPLAPEQAAWRAAEQARAPVVPFGVDLCYWGQEELMAGKILKCDSEHRFWKPCEVDAEVESASVSEALRSRRITFAGQFEPVQHRCRAPRPDGQLCARQDRLKCPFHGKIIPRDDAGRPLNAEDRAREQRQQLQRPAGRPDWQDPEFLRDVEAATGVDLGSSRPGGKGKGKRRKHSGLTDLKRQADTARARIAKKVFAKAAVQRVVTAMNQMDEKKHEKFANQFNYALN", "sequence_length": 685, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e1f61850deecd072263f14cb680b69d583d2d6eb1d323de94913caf94a460271", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/F1MX48.json", "taxon_id": "9913", "uniprot_accession": "F1MX48", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/uv-stimulated-scaffold-protein-a-c-terminal-domain-ipr049431.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/uv-stimulated-scaffold-protein-a-c-terminal-domain-ipr049431.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/zf-uvssa.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS52058", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/zf-uvssa.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/uv-stimulated-scaffold-protein-a-n-terminal-alpha-solenoid-repeats-ipr049408.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049408", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/uv-stimulated-scaffold-protein-a-n-terminal-alpha-solenoid-repeats-ipr049408.yaml" } ], "pfam_ids": [ "PF09740", "PF20867" ], "protein_name": "UV-stimulated scaffold protein A homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKRRQPKYCSFMDSIDNSTTIIRKNLNRFIRELTDDGKLDFESIPYQNLQKEVANQDEEGCENVIEVLLDTTSRSGCPDRKLILQLFNSFFLQFPIFRENLLNDPSEFLELMFETNPIRNPLPGSKKHGNELKVEAITVIKSWEKEKCVKNDARMKCLVVTLKKTKFVDYENGAKKIEAERKRKKILEERKMKMIENSVNVYSSKYHEIKNDAETLSMELTTTMQMLVPSFTTADPEVPSTSTSTPSAISDSKSFEIFIPDLTPEISVSSENDAIVEAFLGAKLSLIHRVQTLRKLVKRLQLLKQPGEKLAQEIIDYRDGIKNLVLKADELRIINPRPPKNKRKKSDDDFIDVDISIDDILMVQYAEKLEVDVKSKDESEKITESPEKHKIEMKNEKPVKIKTVPFGLDLKYWGEERKDVEVPKNNADCHRFWRSADEGTVAGKAQQSIYTQRQYTFIGKAPDNRKVCLAKMKSGKLCPRKDYYTCPLHGKIVDRDDEGRPINEEDRLEENYRKEQNHLKEADKIRQMIEKEYESKTKRRKKHDVDTTASEDVRNRLQKKLLDPKTIQRVSADLDASRKNRLEKNFGQQFSHF", "sequence_length": 594, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "654834350812aaa007644aa3bda88afd3fdc897f05e126e10ba3fb09aec8b5f6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q23088.json", "taxon_id": "6239", "uniprot_accession": "Q23088", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/rna-polymerase-inhibitor-activity-go0140870.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140870", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/rna-polymerase-inhibitor-activity-go0140870.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/uv-stimulated-scaffold-protein-a-c-terminal-domain-ipr049431.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/uv-stimulated-scaffold-protein-a-c-terminal-domain-ipr049431.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2043-pf09740.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09740", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2043-pf09740.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/zf-uvssa.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS52058", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/zf-uvssa.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/uv-stimulated-scaffold-protein-a-n-terminal-alpha-solenoid-repeats-ipr049408.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049408", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/uv-stimulated-scaffold-protein-a-n-terminal-alpha-solenoid-repeats-ipr049408.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/uvssa-n-pf20867.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/uvssa-n-pf20867.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q2YD98", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09740", "PF20867" ], "protein_name": "UV-stimulated scaffold protein A", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b40831fbf8a1ed7e7678918863d93057eb7c47551b616737cdafd38dfc7f9770", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDQKLSKLVEELTTSGEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLSAFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGWNEKFGEAYKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQAEREMQEMSGEIESCLTEVESCFRLLVPFDFDPNPETESLGMASGMSDALRSSCAGQVGPCRSGTPDPRDGEQPCCSRDLPASAGHPRAGGGAQPSQTATGDPSDEDEDSDLEEFVRSHGLGSHKYTLDVELCSEGLKVQENEDNLALIHAARDTLKLIRNKFLPAVCSWIQRFTRVGTHGGCLKRAIDLKAELELVLRKYKELDIEPEGGERRRTEALGDAEEDEDDEDFVEVPEKEGYEPHIPDHLRPEYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQLRQLRDHLPPPSSASPSRALPEPQEAQKLAAERARAPVVPYGVDLHYWGQELPTAGKIVKSDSQHRFWKPSEVEEEVVNADISEMLRSRHITFAGKFEPVQHWCRAPRPDGRLCERQDRLKCPFHGKIVPRDDEGRPLDPEDRAREQRRQLQKQERPEWQDPELMRDVEAATGQDLGSSRYSGKGRGKKRRYPSLTNLKAQADTARARIGRKVFAKAAVRRVVAAMNRMDQKKHEKFSNQFNYALN", "sequence_length": 709, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b40831fbf8a1ed7e7678918863d93057eb7c47551b616737cdafd38dfc7f9770", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q2YD98.json", "taxon_id": "9606", "uniprot_accession": "Q2YD98", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/rna-polymerase-inhibitor-activity-go0140870.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140870", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/rna-polymerase-inhibitor-activity-go0140870.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/uv-stimulated-scaffold-protein-a-c-terminal-domain-ipr049431.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/uv-stimulated-scaffold-protein-a-c-terminal-domain-ipr049431.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/zf-uvssa.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS52058", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/zf-uvssa.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/uv-stimulated-scaffold-protein-a-n-terminal-alpha-solenoid-repeats-ipr049408.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049408", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/uv-stimulated-scaffold-protein-a-n-terminal-alpha-solenoid-repeats-ipr049408.yaml" } ], "pfam_ids": [ "PF09740", "PF20867" ], "protein_name": "UV-stimulated scaffold protein A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDQKLSQLIEELTTSGESQLNAQKMKELKKICKSSEEQLSHAYRLLITQLTQGHAEIRLSAFQIVDELFTRSHQFRMLLVSDFQEFLELTLGTDSDRPLPPPREAAQRLRQAAMQAVEGWNEKFGQAYKKLALGYHFLKHTKKVDFRDINVRTVAERKREEEKQKHLDKIHRESADRAKREMEEMYDEIECCLTEVENCFKLLVPLDFVPCPEDKFFGEASSMTEGYAPCPLSPDLATPRESGLSGPQDEEQPCCSKDLVASAYHVGSVVGLKALPQTAMKDSSRDEDEPSDPDDFLRSHGLGSHKYTLDVEVPSDGLKVQENEDNLAVLHAARDSLKLIQNKFLPTVCSWVQRFTRAGTYSAHLKQAIDLKMELELALKKYEELNIEPGRGQRSRTEALEDSEDEDQDFVEVPEKEGYEPRIPDHLRAEYGLEPKAPLKTLEKGTAVCKLQERTRMRREEEASDPTSAAAQMLRLQDCLSSPSPSSTRVLPGPEEAQKQAERARAPIVPFGVDLCYWGQEQLTAGKILKSDSQHRFWKPSEVEEEVDSAHVSEMLHSRHITFSGTFEPVQHKCRALRPNGRLCERQDRLKCPFHGKIIPRDDKGQPLNPEDRAREQRQQLQRQQAHPDWQDPEFLKDVEAATGVDLGSSRSSKKGKGKKKKHPNLTDLRERTNTARARLEKKVFAKAAVQRVVAAMNQMDQKKHEKFANQFNYALK", "sequence_length": 717, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "44627614a9c56d5c5c6d63737fbf55fc6b01a2a400a87e8804253c8604ec7173", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D479.json", "taxon_id": "10090", "uniprot_accession": "Q9D479", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/uv-stimulated-scaffold-protein-a-c-terminal-domain-ipr049431.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/uv-stimulated-scaffold-protein-a-c-terminal-domain-ipr049431.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/zf-uvssa.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS52058", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/zf-uvssa.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/uv-stimulated-scaffold-protein-a-n-terminal-alpha-solenoid-repeats-ipr049408.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049408", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/uv-stimulated-scaffold-protein-a-n-terminal-alpha-solenoid-repeats-ipr049408.yaml" } ], "pfam_ids": [ "PF09740", "PF20867" ], "protein_name": "UV-stimulated scaffold protein A homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGRDDGGGKVIGLIEKATKSTAQEVDPRLLKAIKSIVRYSDSEVRLSSQTLMELMRHNHSQVRYLTLFIIDELFMRSKLFRTLIIENLDQLLSLSIGFRSNLPLPAPPAVATTLRSKAIEFLEKWNLSFGFHYKELRLGFDYLKNTLKLKFPDLQANAARIQRERQEREMKTKEILRNKFDSLRVSFGLFKYEIEVTIKEIKECMEIVQWRGDDGVPLAILDEEDFEEIRCSHLRQIRLDSLKQSEKVEETGENRIVFDVLREQCKLLVTKHLISVQEGISLLIRVDVSDNRTRDSMLKDLIDIRNNILAAKKKWEEAGFTMSRMTDIHGNEETNEEEEDIWEEDDGKVKTDSVKNVAHVMRTQQSENSSLPSSGEAKKSTSEARSNKVSNTKKVGSSGNSLRDKLISEAPVMNWGSQLTNWESTTEVRANYRGLEIESHWGRVDQDAIIPADKIAELNLQATVYREERTETPPCRASLKKGGLCQRRDLRVCPFHGPIVPRDDEGNTIIQESPLDESENQTSSTSGTNQDVSMDETTSDSDPNQLARQIAKEALKNIREKDKEVVRKRAKLVKVKVKEHNHEVLRGAAIASTSRSNAMDDEFDRVFAEKKNKKQTFSTRRKKTTAKDRISQRLFSNRVKGTNPQQLAQGNDEKCRDTSANQW", "sequence_length": 664, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "86936e55a503a2ae69c940cbf918e97eb0bfb81cbb8f5c742cf5219765bef8bc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M358.json", "taxon_id": "3702", "uniprot_accession": "Q9M358", "uniprot_release": "2026_03" } ], "pfam_id": "PF09740", "short_name": "DUF2043", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2045-pf09741.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09741", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2045-pf09741.yaml" } ], "pfam_ids": [ "PF09741" ], "protein_name": "Uncharacterized protein KIAA0930 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRAIAEERGRLSLRREVCGLGCFKDDRIVFWTWMFSTYFMEKLAPRQDDMLFYVRRKRAYPGNEGTIDGRKAEAEPEVEVEVYRRDSKKLPGLGDPDIDWEESVCLNLILQKLDYMVTCAVCTRADGGDIHIHRKKSQQVFASPSKHPMDSKGEESKMSYPNIFFMIDSFEEVFSDMTVGEGEMVCVELVASDKTNTFQGVIFQGSIRYEALKKVYDNRVSVAARMAQKMSFGFYKYNNMEFVRMKGPQGKGHAEMAVSRVSTGDTSPCGTEDSSPASPMHERVTSFSTPPTPERNNRPAFFSPSLKRKVPRNRIAEMKKSHSANDSEEFFREDDSGADLHNATNLRSRSLSGTGRSLVGSWLKLNRADGNFLLYAHLTYVTLPLHRILTDILEVRQKPILMT", "sequence_length": 404, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9bec7006093b6c03cc770e69c96f695c8a586012c2e53a224a512d740b960ba3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UE31.json", "taxon_id": "10090", "uniprot_accession": "Q3UE31", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2045-pf09741.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09741", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2045-pf09741.yaml" } ], "pfam_ids": [ "PF09741" ], "protein_name": "Uncharacterized protein KIAA0930 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRAIAEERGRLSLRREVCGLGCFKDDRIVFWTWMFSTYFMEKLAPRQDDMLFYVRRKRAYTGSESTADGRKAEAEPEVEVEVYRRDSKKLPGLGDPDIDWEESVCLNLILQKLDYMVTCAVCTRADGGDIHIHRKKSQQVFASPSKHPMDSKGEESKMSYPNIFFMIDSFEEVFSDMTVGEGEMVCVELVASDKTNMFQGVIFQGSIRYEALKKVYDNRVSVAARMAQKMSFGFYKYNNMEFVRMKGPQGKGHAEMAVSRVSTGDTSPYGTEDSSPASPMHERVTSFSTPPTPERNNRPAFFSPSLKRKVPRNRIAEMKKSHSANDSEEFFREDDGGADLHNATNLRSRSLSGTGRSLVGSWLKLSRADGNFLLYAHLTYVTLPLHRILTDILEVRQKPILMT", "sequence_length": 404, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "80b82bf458b0763ed1754bab4c5127a1df39bd534aa182e7f72c52bded68baa2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q4G008.json", "taxon_id": "10116", "uniprot_accession": "Q4G008", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2045-pf09741.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09741", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2045-pf09741.yaml" } ], "pfam_ids": [ "PF09741" ], "protein_name": "Uncharacterized protein KIAA0930", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRAIAEERGRLSLRREVCGLGCFKDDRIVFWTWMFSTYFMEKWAPRQDDMLFYVRRKLAYSGSESGADGRKAAEPEVEVEVYRRDSKKLPGLGDPDIDWEESVCLNLILQKLDYMVTCAVCTRADGGDIHIHKKKSQQVFASPSKHPMDSKGEESKISYPNIFFMIDSFEEVFSDMTVGEGEMVCVELVASDKTNTFQGVIFQGSIRYEALKKVYDNRVSVAARMAQKMSFGFYKYSNMEFVRMKGPQGKGHAEMAVSRVSTGDTSPCGTEEDSSPASPMHERVTSFSTPPTPERNNRPAFFSPSLKRKVPRNRIAEMKKSHSANDSEEFFREDDGGADLHNATNLRSRSLSGTGRSLVGSWLKLNRADGNFLLYAHLTYVTLPLHRILTDILEVRQKPILMT", "sequence_length": 404, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9f2694cae6f51d7d2f09f2fbfbea049c1b3d007f596232a497317b94ce642bba", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ICG6.json", "taxon_id": "9606", "uniprot_accession": "Q6ICG6", "uniprot_release": "2026_03" } ], "pfam_id": "PF09741", "short_name": "DUF2045", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/e3-ufm1-ligase-pf09743.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09743", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/e3-ufm1-ligase-pf09743.yaml" } ], "pfam_ids": [ "PF09743", "PF23659", "PF25041", "PF25870" ], "protein_name": "E3 UFM1-protein ligase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADAWEEIRRLAADFQRAQFAEATQRLSERNCIEIVNKLIAQKQLEVVHTLDGKEYITPAQISKEMRDELHVRGGRVNIVDLQQAINVDLTHIENRIGDIVKSEKHVQLVLGQLIDENYLDRLAEEVNDKLQESGQVTIAELCKTYDLPGNFLTQALTQRLGRIINGHIDLDNRGVIFTEAFVSRHKARIRGLFSAITRPTAVNSLISRYGFQEQLLYSVLEELVNDGRLRGTVVGGRQDKAVFIPDIYSRTQSTWVDSFLRQNGYLEFDALSRLGIPDAMSYIKKRYKTTQLLFLKAACVGQGLVDQVEASVEEAISSGTWVDIAPLLPSSLSVEDAAILLQHVMRALSKQASAVVFSDTIVVSEKFINDCTDLFSELMHQKAEKEMKNNPVHLITEEDLKQISILESINTSKKDKKDERRRKATEGSGSVRGGGGSNAREYKIKKTKKKGRKDDDSDDESSHTGKKKPEITFMFQDEIEDFLRKHLQDAPEEFISELAEYLIKPLNKTYLEVVHSVYMSSTSSASGTGRKRTIKDLQEEVSNLYNNIRLFEKGMKFFTDDTQAALTKHLLKTVCTDITNLVFNFLASDLMMAVDDPATITSEVRKKILSKLSEETKVALTKLHNSLNEKSIEDFLACLDSAAEACDIMLKKGDKKRERQVLFQHRQALVEQLKVTEDPALTLHLTSVLLFQFSTHSMLHAPGRCVPQIIAFLSSKIPEDQHALLVKYQGLVVKHLVSQNKKTGQGEDPLSDELDKEQEDIINTTRKELQELSSSIKDLVLKSRKSSVTEE", "sequence_length": 792, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e4e823d4e9376b393bf1ad94468854a2a9f25c513b2a4414aa4d2b8e1a8aa7d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1A4I9.json", "taxon_id": "9913", "uniprot_accession": "A1A4I9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/e3-ufm1-ligase-pf09743.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09743", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/e3-ufm1-ligase-pf09743.yaml" } ], "pfam_ids": [ "PF09743", "PF23659", "PF25041", "PF25870" ], "protein_name": "E3 UFM1-protein ligase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"https://rest.uniprot.org/uniprotkb/Q9LX73.json", "taxon_id": "3702", "uniprot_accession": "Q9LX73", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/ufm1-ligase-activity-go0061666.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061666", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/ufm1-ligase-activity-go0061666.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/e3-ufm1-protein-ligase-1-like-domain-ipr056580.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056580", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/e3-ufm1-protein-ligase-1-like-domain-ipr056580.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/e3-ufm1-protein-ligase-1-like-n-terminal-ipr056579.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056579", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/e3-ufm1-protein-ligase-1-like-n-terminal-ipr056579.yaml" }, { 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"canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/whd-ufl1-5th-pf25870.yaml" } ], "pfam_ids": [ "PF09743", "PF23659", "PF25041", "PF25870" ], "protein_name": "E3 UFM1-protein ligase 1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSDWDEIKRLAADFQKAQLTSTLQKLSERNCVEIVTLLLEKQMLEVVFTNDGKEYITPDHLEREIQDELYVNGGRANLVEVSKTLNVDLSRIELLAERISAENQSVHLVLGQLIDEDYISHIAQEINEKLVQRGEVSISELASQFDLPSDFLQHDVVEKHLGKIIKGRQDASNPRVFFTQAYIQRCKAKIRGALAAITRPINVAVILQKIGVQEKIFYSLLDEIAPAGQVTSKQANSQYVPHIYAKTQADWVNSFYKQNSFLEYDAIQKLGISDAKSYIRKQFPNEEFLYLKRVALGARLVELTVVTALNECSATKQYLDLTTILPSNLSEEDIEEVFSTIMAQKHSNPSNFVYLDGIVFSQPYLAQLVQPCQALAESQAKAAIDGGVYQQYIVEKTLAQKGNVSTQELEDEGKVDKRDERRKKASSGKAGGGAQGRETKTKSTKKHQRGKAAAQFDSDDEDDAQQGSRGGGGASKKAVKPLELVKTADIVKLITASLEEEGLEHLSKSIASLYTNQFNQTALARAQELFEATPQTNRRQTHAAIQDRINTLLIDIRLYEKGLKLFPQDTQTQLVKYLLKSLGNEICNELSLYVASECNLTVKNTNLNVDQRNKLAQECEAQYRAALLEQNKALNKSIDDFELATETVLKTCSMIIKKVDKKKDRLLIADHKKKLQKQLLECNEPALLLHLAALILFTTITGSILHASGKFVSAILQHIRGSLNEDQNALLLRYHDLVLQVLQAIPDSNESKLANEHLQTMQNQVVELAQNFSRASISKAD", "sequence_length": 782, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f5d49e715624a3d59aad988dda9406108b447501bf056b93acbb3d81b4778820", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VI55.json", "taxon_id": "7227", "uniprot_accession": "Q9VI55", "uniprot_release": "2026_03" } ], "pfam_id": "PF09743", "short_name": "E3_UFM1_ligase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nuclear-speckle-splicing-regulatory-protein-1-n-terminal-ipr018612.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018612", "section": "canonical_examples", "url": 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"https://rest.uniprot.org/uniprotkb/Q09252.json", "taxon_id": "6239", "uniprot_accession": "Q09252", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nsrp1-n-pf09745.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09745", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nsrp1-n-pf09745.yaml" } ], "pfam_ids": [ "PF09745", "PF20427" ], "protein_name": "Nuclear speckle splicing regulatory protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIPGRQYGLILPKKTQPLNRVLQKPSVFGNDSDDDEASVSESLQREAAKKQAMRQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEENNPKLLMGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEARLDVTKQKDLSGFYRHLLNQAVGEEAVPKSSFREARTVIKEEKLRGYPDETNSENRPQQNCALQSGVEEAEENPDADSDSEESCDDGERGDHKVKSRGEEDTGASTKYLKHHKNHTHSRSSSEEGGLSTKYHSRSSQSRGHEHKGGQHQDRQSRDQESCHKDRSHREEKSSHRHREASHKDHHWKRHEHEDKPKGRGQGERQDREWKREKYSSREQEKDRQWNDHDRYSEKEKKGKEKEEHRKARRERCEDGAKYRERKKPEGSGQSSERHRDRRESSPRPRPEDDLLDQERSSKARNTEKDKGEQGKPPRSETSLATKHRLTEERPEKGSQPERPPEAVSKFAKRSNEETVMSARDRYLARQMARINAKTYIEKEDD", "sequence_length": 547, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "426ca0b52f45dba03b9751cd7fa0caac0efa40552b9c074dbcd62300308ddc7c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4FZU3.json", "taxon_id": "10116", "uniprot_accession": "Q4FZU3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nuclear-speckle-splicing-regulatory-protein-1-n-terminal-ipr018612.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018612", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nuclear-speckle-splicing-regulatory-protein-1-n-terminal-ipr018612.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nuclear-speckle-splicing-regulatory-protein-1-rs-like-domain-ipr046850.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046850", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nuclear-speckle-splicing-regulatory-protein-1-rs-like-domain-ipr046850.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nrp1-c-pf20427.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nrp1-c-pf20427.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nsrp1-n-pf09745.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09745", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nsrp1-n-pf09745.yaml" } ], "pfam_ids": [ "PF09745", "PF20427" ], "protein_name": "Nuclear speckle splicing regulatory protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIPGRQYGLILPKKTQPLHRVLQKPSVFGSDSDDDETSVSESLQREAAKKQAMKQTKLEIQKALAEDSTVYEYDSVYDEMQKKKEENNPKLLPGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMENGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEAHLDVTKQKDLSGFYRHLLNQAVGEEAAPKSSFREARTVIKEEKLRGYPDETNSESRPPQQSCVLQRGAQEAEENPDADREFDDESSEDGEKRDHKVKSRGEDTGASMKHPKHHKNRAHSRSSSEERGLGTKHHSRGSQSRGHEHQDRQSRDQESCHKDRSHREEKSSHRHREASHKDHYWKKHEQEDKLKGREQEERQDREGKREKYSSREQERDRQRNDHDRYSEKEKKRKEKEEHTKARRERCEDSGKHREREKPEGHGQSSERHRDRRESSPRSRPKDDLDQERSSKARNTEKDKGEQGKPSHSETSLATKHRLAEERPEKGSEQERPPEAVSKFAKRSNEETVMSARDRYLARQMARINAKTYIEKEDD", "sequence_length": 542, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3e7a49da5f0e05fb6dcf6bdd9896beba649adaf88a83c74d0116fbcbc60e6574", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5NCR9.json", "taxon_id": "10090", "uniprot_accession": "Q5NCR9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nuclear-speckle-splicing-regulatory-protein-1-n-terminal-ipr018612.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018612", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nuclear-speckle-splicing-regulatory-protein-1-n-terminal-ipr018612.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nuclear-speckle-splicing-regulatory-protein-1-rs-like-domain-ipr046850.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046850", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nuclear-speckle-splicing-regulatory-protein-1-rs-like-domain-ipr046850.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nrp1-c-pf20427.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nrp1-c-pf20427.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nsrp1-n-pf09745.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09745", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nsrp1-n-pf09745.yaml" } ], "pfam_ids": [ "PF09745", "PF20427" ], "protein_name": "Nuclear speckle splicing regulatory protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIPGRQYGLILPKKTQQLHPVLQKPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKLEIQKALAEDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFREARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETRVNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQSRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDREKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGVQSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTEEGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD", "sequence_length": 558, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7cd14aa4d9427b40f680099b211eac69f98bf2c7458d0197063928cecaa90fcd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H0G5.json", "taxon_id": "9606", "uniprot_accession": "Q9H0G5", "uniprot_release": "2026_03" } ], "pfam_id": "PF09745", "short_name": "NSRP1_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccd97-like-c-terminal-ipr040233.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040233", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccd97-like-c-terminal-ipr040233.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccd97-like-c-pf09747.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccd97-like-c-pf09747.yaml" } ], "pfam_ids": [ "PF09747" ], "protein_name": "Coiled-coil domain-containing protein 97", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAVATATAAKEPDKGCIEPGPGHWGELSRTPVPSKPQDKVEAAEATPVALDSDTSGAENAAVSAMLHAVAASRLPVCSQQQGEPDLTEHEKVAILAQLYHEKPLVFLERFRTGLREEHLACFGHVRGDHRADFYCAEVARQGTARPRTLRTRLRNRRYAALRELIQGGEYFSDEQMRFRAPLLYEQYIGQYLTQEELSARTPTHQPPKPGSPGRPACPLSNLLLQSYEERELQQRLLQQQEEEEACLEEEEEEEDSDEEDQRSGKDSEAWVPDSEERLILREEFTSRMHQRFLDGKDGDFDYSTVDDNPDFDNLDIVARDEEERYFDEEEPEDAPSPELDGD", "sequence_length": 343, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c1eea5975d0abf72980e8fefd9bbe3c81478986c2c7dac0b634f0adebcf6c873", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96F63.json", "taxon_id": "9606", "uniprot_accession": "Q96F63", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccd97-like-c-terminal-ipr040233.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040233", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccd97-like-c-terminal-ipr040233.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccd97-like-c-pf09747.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccd97-like-c-pf09747.yaml" } ], "pfam_ids": [ "PF09747" ], "protein_name": "Coiled-coil domain-containing protein 97", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAVAAAEVTERKPDNDGVEPRVVHWGELSQTPIPSGPQEKETAERTPDIPNSGSSQAESPAVSAMLHAIAASHLPVCSQQQGEPDLTEPEKVAILGQLYHKKPLVFLERFRTGLREEHLACFGHLRGDHRADFYCAEVARQGTARPRTLRTRLRNRRYAALRELIQGGEYFSDEQMRFRAPLLYEQYIGQYLTQEELNARTAAPQAPRSGSPGTPAYPLSDLLFQSYQERELQQKLLQQQEEEEACFEEEEDSDEEDQRSDKDSEAWVPDSEERLILREEFTSRMHQRFLDGKDGGFDYSTVDDNPDFDNLDIVARDEEDRYFDEEEPEDVSSAELGGD", "sequence_length": 340, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "71d727641522fa508712ce2ac7b145af8f0d255d5c774170a16ef462b24ad558", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DBT3.json", "taxon_id": "10090", "uniprot_accession": "Q9DBT3", "uniprot_release": "2026_03" } ], "pfam_id": "PF09747", "short_name": "CCD97-like_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/abhd18-pf09752.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09752", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/abhd18-pf09752.yaml" } ], "pfam_ids": [ "PF09752" ], "protein_name": "Cardiolipin-specific deacylase, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGVSKLDILYRRLLLTKLFIRGWGRPEDLKRLFEFRKMIGNRERCQNLVSSDYPVHIDKIEEQSDCKILDGHFVSPMAHYVPDIMPIESVIARFQFIVPKEWNSKYRPVCIHLAGTGDHHYWRRRTLMARPMIKEARMASLLLENPYYGCRKPKDQVRSSLKNVSDLFVMGGALVLESAALLHWLEREGYGPLGMTGISMGGHMASLAVSNWPKPMPLIPCLSWSTASGVFTTGVLSKSINWRELEKQYYTQTVYEEEIIHMLEYCGTDSFKMGQEFVKHFTSSADKLTNLNLVSRTLNLDISNQVVSQKPADCHNSSKTSVSATSEGLLLQDTSKMKRFNQTLSTNKSGYTSRNPQSYHLLSKEQSRNSLRKESLIFMKGVMDECTHVANFSVPVDPSLIIVVQAKEDAYIPRTGVRSLQEIWPGCEIRYLEGGHISAYLFKQGLFRQAIYDAFDRFLHKYAN", "sequence_length": 464, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3a585f24d32831526d31b6fb000e8f1b8b5f7531a9a28e9830711208655cd975", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q0P651.json", "taxon_id": "9606", "uniprot_accession": "Q0P651", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/abhd18-pf09752.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09752", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/abhd18-pf09752.yaml" } ], "pfam_ids": [ "PF09752" ], "protein_name": "Cardiolipin-specific deacylase, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGVSKLDILYRRLLLTKLFIRGWGRPEDLKRLFEFRKMIGNRERCQNLVSSDYPVHIDKVEEQSDCKILDGHFVSPMAHYVPGIMPIESVIARFQFIVPKEWNSRYRPVCIHLAGTGDHHYWRRRTLMARPMIKEARMASLLLENPYYILLKPKDQVRSSLKNVSDLFVMGGALILESAALLHWLEREGYGPLGMTGISMGGHMASLAVSNWPKPMPLIPCLSWSTASGVFTTGVLSKSINWRELEKQYYTQTVYEEEIIHMLEYCGTDSFKMGHEFMKHFPSNEDKLTNLNLVSRTLNLDMRDQVVSPKHAECHHSGKASISATSKGQLLQDTAKVERLNQTLTTNKSCFASYNPQSLHLLSREQRRSNLQKESLIFMKGVMDECTHVANFSVPVDPSLIIVVQAKEDAYIPRTGVRSLQEIWPGCEIRYLEGGHISAYLFKQGLFRQAIYDAFERFLHKYAN", "sequence_length": 464, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "755877c7d42ebf179a1b9196fe5db62edfa6de2a922e3edec3417c8d0b247241", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q4V7A8.json", "taxon_id": "10116", "uniprot_accession": "Q4V7A8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/abhd18-pf09752.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09752", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/abhd18-pf09752.yaml" } ], "pfam_ids": [ "PF09752" ], "protein_name": "Cardiolipin-specific deacylase, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGVSKLDILYRRLLLTKLFIRGWGRPEDLKRLFEFRKMIGNRERCQNLVSSDYPVHIDKVEEQSDCKILDGHFVSPMAHYVPGIMPIESVVARFQFIVPKEWNSRYRPVCIHLAGTGDHHYWRRRTLMARPMIKEARMASLLLENPYYGCRKPKDQVRSSLKNVSDLFVMGGALILESAALLHWLEREGYGPLGMTGISMGGHMASLAVSNWPKPMPLIPCLSWSTASGVFTTGVLSKSINWRELEKQYYTQTVYEEEIIHMLEYCGTDSFKMGHEFMNHLPSNADKLTNLNLVSRTLNLDMTDQVVSPKDAKCHKSGKTSISAPSNGQLLQDTAKMECLNQTLSTNKSWFASYNPQSFHLLNREQRRSNRQKESLIFMKGVMDECTHVANFSVPVDPSLIIVVQAKEDAYIPRTGVRSLQEIWPGCEIRYLEGGHISAYLFKQGLFRQAIYDAFERFLHKYAN", "sequence_length": 464, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c5988a13fd34be2b4de405efd6ded93a915cc8a8f5df486e5e537de8c44768cb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C1A9.json", "taxon_id": "10090", "uniprot_accession": "Q8C1A9", "uniprot_release": "2026_03" } ], "pfam_id": "PF09752", "short_name": "ABHD18", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2046-pf09755.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2046-pf09755.yaml" } ], "pfam_ids": [ "PF09755" ], "protein_name": "Coiled-coil domain-containing protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADSASESDTDAAGGGPAAMQSSCSATSGGSGGGGGGKSGGIVISPFRLEELTNRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIQARAEQEEEFISNTLFKKIQALQKEKETLAVNYEKEEEFLTNELSRKLMQLQHEKAELEQHLEQEQEFQVNKLMKKIKKLENDTISKQLTLEQLRREKIDLENTLEQEQEALVNRLWKRMDKLEAEKRILQEKLDQPVSAPPSPRDISMEIDSPENMMRHIRFLKNEVERLKKQLRAAQLQHSEKMAQYLEEERHMREENLRLQRKLQREMERREALCRQLSESESSLEMDDERYFNEMSAQGLRPRTVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTRAGMSYYNSPGLHVQHMGASHGITRPSPRRSSSPDKFKRPTPPPSPNTQSPVQPPPPPPPPPMQPAVPSAAPTQPAPTQPQHPVHPSSQP", "sequence_length": 469, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5c04ae6663c89c42d69fd22ec30d0a5d3ac63be210108f6c0c93e67f291b51c3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D3YZP9.json", "taxon_id": "10090", "uniprot_accession": "D3YZP9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2046-pf09755.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2046-pf09755.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q16204", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09755" ], "protein_name": "Coiled-coil domain-containing protein 6", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "098b3fbefa3a013be7b7ba3cd75a2525fa7ef485f024935603e42a578984e5f5", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MADSASESDTDGAGGNSSSSAAMQSSCSSTSGGGGGGGGGGGGGKSGGIVISPFRLEELTNRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIQARAEQEEEFISNTLFKKIQALQKEKETLAVNYEKEEEFLTNELSRKLMQLQHEKAELEQHLEQEQEFQVNKLMKKIKKLENDTISKQLTLEQLRREKIDLENTLEQEQEALVNRLWKRMDKLEAEKRILQEKLDQPVSAPPSPRDISMEIDSPENMMRHIRFLKNEVERLKKQLRAAQLQHSEKMAQYLEEERHMREENLRLQRKLQREMERREALCRQLSESESSLEMDDERYFNEMSAQGLRPRTVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTRAGMSYYNSPGLHVQHMGTSHGITRPSPRRSNSPDKFKRPTPPPSPNTQTPVQPPPPPPPPPMQPTVPSAATSQPTPSQHSAHPSSQP", "sequence_length": 474, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "098b3fbefa3a013be7b7ba3cd75a2525fa7ef485f024935603e42a578984e5f5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q16204.json", "taxon_id": "9606", "uniprot_accession": "Q16204", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyostelium discoideum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2046-pf09755.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2046-pf09755.yaml" } ], "pfam_ids": [ "PF00169", "PF09755" ], "protein_name": "PH domain-containing rcdII", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSNAAEKSSKEIIEDLQRQLLTEKNRNRTLVEELKQLRDSHARIQIVTENEEEYITNKFMKYLNQLKKEKEELALKVEQEEEYLTNTLQKKMLTIMKEKVDLENQLEQEEEFIVNKLQKQIQDVMKDKKALEKRLENEINDHRSLLKLQDEVIVLRDKIKELESNGNKKEDIDALKAENFVLGQKIIREQEKLSKVNSENTKLMSNLEIDDERNFNNKSKRNRSISFPTSMASTTTTTTTSITSSTTSITSSTSSINSSGSSSTNNTCNNNSSSNIPTSPLSCSSNSSGGGGGSGSLNNSCNSNCSNSSNSSNNNCNNNNNNNNGNSKLSTGVPITRSRSSSSNSNPCLITKIVKEGWLKRKSISSSNQETLEKRYYEISTDGEMREYFDETKQIPTSQYINLDTCFQIDIVTDNPNHPGYSDIKLYIKTNSISPVEIITFSTSSNDCNDWKDTISSLMPLKR", "sequence_length": 464, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9af07d2b44b429ffa7296f132c4801fdf667e5b89bc963697b1324c238f8cd5f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q54Q72.json", "taxon_id": "44689", "uniprot_accession": "Q54Q72", "uniprot_release": "2026_03" } ], "pfam_id": "PF09755", "short_name": "DUF2046", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Canis lupus familiaris", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2053-pf09767.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09767", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2053-pf09767.yaml" } ], "pfam_ids": [ "PF09767" ], "protein_name": "BOS complex subunit TMEM147", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKGEYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASAQVWMITRYDLYHTFRPAVLLLMFLSVYKAFVMETFVHLCSLGSWTALLARAVVTGLLALSTLALYVAVVNVHS", "sequence_length": 224, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c1bf8396e869af83e2dda1a37eef4ca21f47cde3bf729d1b33c23c22918ca554", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A8I3MKU8.json", "taxon_id": "9615", "uniprot_accession": "A0A8I3MKU8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Capra hircus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2053-pf09767.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09767", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2053-pf09767.yaml" } ], "pfam_ids": [ "PF09767" ], "protein_name": "BOS complex subunit TMEM147", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKGEYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASAQVWMITRYDLYHTYRPAVLLLMFLSVYKAFVMETFVHLCSLGSWTALLARALVTGLLALSTLALYVAVVNVHS", "sequence_length": 224, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8008d06ec5a2ff39d9ebf691b67a4209f798608a28e63af1774ce62cff94bc4c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/I6VSD2.json", "taxon_id": "9925", "uniprot_accession": "I6VSD2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/multi-pass-translocon-complex-go0160064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/multi-pass-translocon-complex-go0160064.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/multi-pass-transmembrane-protein-insertion-into-er-membrane-go0160063.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/multi-pass-transmembrane-protein-insertion-into-er-membrane-go0160063.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2053-pf09767.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09767", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2053-pf09767.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9BVK8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09767" ], "protein_name": "BOS complex subunit TMEM147", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "15905459f3834f4397e8b3005430c0eec216af224f94cdd8b9dab6131b6eb4f7", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKGEYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASAQVWMITRYDLYHTFRPAVLLLMFLSVYKAFVMETFVHLCSLGSWAALLARAVVTGLLALSTLALYVAVVNVHS", "sequence_length": 224, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "15905459f3834f4397e8b3005430c0eec216af224f94cdd8b9dab6131b6eb4f7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BVK8.json", "taxon_id": "9606", "uniprot_accession": "Q9BVK8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/multi-pass-translocon-complex-go0160064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/multi-pass-translocon-complex-go0160064.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/multi-pass-transmembrane-protein-insertion-into-er-membrane-go0160063.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/multi-pass-transmembrane-protein-insertion-into-er-membrane-go0160063.yaml" } ], "pfam_ids": [ "PF09767" ], "protein_name": "BOS complex subunit TMEM147", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKGEYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASAQVWMITRYDLYHTFRPAVLLLMFLSVYKAFVMETFVHLFSLGSWTALLARAVVTGLLALSTLALYVAVVNVHS", "sequence_length": 224, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4422c08a9fcfb5804f92ca6de01b8e492c637e42cf2bfe4994f888f81cd0e78f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CQG6.json", "taxon_id": "10090", "uniprot_accession": "Q9CQG6", "uniprot_release": "2026_03" } ], "pfam_id": "PF09767", "short_name": "DUF2053", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ima1-n-terminal-domain-ipr018617.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018617", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ima1-n-terminal-domain-ipr018617.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transmembrane-protein-201-c-terminal-ipr018861.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018861", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transmembrane-protein-201-c-terminal-ipr018861.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2448-pf10476.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10476", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2448-pf10476.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ima1-n-pf09779.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09779", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ima1-n-pf09779.yaml" } ], "pfam_ids": [ "PF09779", "PF10476" ], "protein_name": "Transmembrane protein 201", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGVSALLASCPTAGLAGGLGVTACAAAGVVLYRIARRVKPTHTMVNCWFCNHDTLVPYGNRNCWDCPHCEQYNGFQENGDYNKPIPAQYMEHLNHVVSSVPSPRDPAQPQQWVSSQVLLCRRCSHHQTTKIKQLAAFTPREEGRYDEEIEVYRHHLEQMYKLCRPCQAAVEYYIKHQNRQLRALLLSHQFRRREADQAHGQSFSSSAVKAPFQVILLRALAFLACAFLLFTTLYGPSEPFTPGAALPPALPPGGNSSAASDNTTSQAEGWQQLLGLLPEHATEKLHEAWAFGQSHQTSIVAVGLLTCLLAMLLAGRIRLRRIDAFSTCLWALLLGLHLAEHYLQAASPGWLDTLKFSTTSLCCLVGFTAAVATRKSTGPRRFRPRRYFSGDSASLFPSSPSLAVPYPSVTSSPASLFIPTPPGFLPLTKQQLFRSPRRVSPSSLPGRLSRALSLGTIPPLTRTDSGYLFSGSRPPSRVSPAGEVSLSDYFSLLSSSFPASPLPSPAPSVASSVASSSGSLRHRRPLISPARLNLKGQKLLLFSSPGEAPNTPSSSEEFSPPNGSLFIESPQLPQRNHTRDTKHTMEMRSMLARDSARSSHSIKKEDESSQSSTCVVDTTTKGCSEETTPWKARVSPSLVRGLLAVSLAVNALFTSAYLYQSLR", "sequence_length": 664, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bd6280adeb2b53c81f54895e0f307c110e986841240aa927bbcffec5bbff6cf9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2A8U2.json", "taxon_id": "10090", "uniprot_accession": "A2A8U2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2448-pf10476.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10476", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2448-pf10476.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ima1-n-pf09779.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09779", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ima1-n-pf09779.yaml" } ], "pfam_ids": [ "PF09779", "PF10476" ], "protein_name": "Transmembrane protein 201", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEALNQILIEYPPLVVGGVGATAVAAGGALIYRIATRKKPTHLQVNCWFCNQDTVVPYGNRNCWDCPYCEQYNGFQENGDYNKPIPAQYMEHLNHGVSAGVPETPKTLQWVNCQMLLCKKCNNNQTLKIKQLASFIPREDENYDEEIEVYKHHLEQTYKLCRPCQTAVEYYIKHQNRQLRALLFNHQLRRTRDADKAFIKNTYSLSTPAWLILLRILTFLACAFLVAVALSGYVDESPSVTQTLSGGVVPPKRVLQNENESKTDEGSLMWDDLMGLLPEKAVENARLFWQSGSDHQMAVASVGLLTCITGVLMAGPVRLRRIDAVASVLWLLVICFYLAECYLKTDVPSWLEMVKFGITSVCCLVGFAAAVATRKSTSQRRARGRRYLSGGSPGEFFCNHGPLLSAPVSESSTFIPTPPPNLSQLLIRQQSQRTRKASPSSLPGRLNRALSLGTIPSLARADSGFLFSGSRPSSQCKDSPPSDYYSLKSGSRPSSPGPSPTPSVAGSVTSTSSSARQRRPLISPARLNISGQKLRLFSSPLEPFSLASPPPFLSEHNPMHSRGFLPDVPHFHLQNHGSVIDEGSVFEHLEKPMGSSSSSSNCHVDTTTGNNIESKPGWKGFLGMTLWPGLLFASLTINLSFICIYVYYNWR", "sequence_length": 651, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b98e0f9545f5d76a35561d16c2f089f2db824f36541c1270ff144540d9e9ab29", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4IG66.json", "taxon_id": "7955", "uniprot_accession": "A4IG66", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ima1-n-terminal-domain-ipr018617.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018617", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ima1-n-terminal-domain-ipr018617.yaml" } ], "pfam_ids": [ "PF09779" ], "protein_name": "Transmembrane protein 201 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVAAAVGVIASVPILYKAIRPRIKTSVECWFCRKSTKVEYQQRNSFTCPSCEQYNGFTEDGDYNRRIPGQAWTTPKRYCEPGKMQSEKPSTFLDRFGGVNMSPKASNGLCSECNLGQEIIMNKVAEFEPIDEDRWNEELEDYRYKLERMYQLCPRCTIQVHGKLEEDKKKYSYLLKVKYKLKHAIGSTLREVMNNQKRSRRFFFAGGSTCEALHFGCLISSIILFLANIDFLQQDAGASLINLPKALQDILPEVYKYSFVINFLIFTTHLIAAFNNKCRVTLPDLLLPILLILAMLTVLTSSDNLSQDVALVRGACASFSTILSMAVTLLPRKKLHKKRPNKIVSSAFSVASTPISQCSSQNSRNASLLDHDHTILRRSPHTPSASPPAMNSSPPLLREITNGPVWSAMRSRENKENMQSYQTKPNNHVESMDWDDSESMAAQSVAQSTRSSHFKPGLLSRNINERMTAQQLTPSVANLNLDTRSVDSPSIFSRQHRQMAQQQNHTPTRSLFGPPRSMVASQYDRSHYMAPEAHTRPGSVFTSVSQQDGHSTVSGAWQCRVIGILFALVFIVLIMQIGLFYVLFTRN", "sequence_length": 588, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f7dee80d85199ce420dbe741b1a6d10bda38ddbfeb6fdc2fad4698155d21438", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q22747.json", "taxon_id": "6239", "uniprot_accession": "Q22747", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ima1-n-terminal-domain-ipr018617.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018617", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ima1-n-terminal-domain-ipr018617.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transmembrane-protein-201-c-terminal-ipr018861.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018861", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transmembrane-protein-201-c-terminal-ipr018861.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2448-pf10476.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10476", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2448-pf10476.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ima1-n-pf09779.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09779", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ima1-n-pf09779.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5SNT2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09779", "PF10476" ], "protein_name": "Transmembrane protein 201", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0a5d17ef11a9cc8ba839bc4f966863582f15a18681be9af7e48649ec1226cf62", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEGVSALLARCPTAGLAGGLGVTACAAAGVLLYRIARRMKPTHTMVNCWFCNQDTLVPYGNRNCWDCPHCEQYNGFQENGDYNKPIPAQYLEHLNHVVSSAPSLRDPSQPQQWVSSQVLLCKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKHQNRQLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVILLRALAFLACAFLLTTALYGASGHFAPGTTVPLALPPGGNGSATPDNGTTPGAEGWRQLLGLLPEHMAEKLCEAWAFGQSHQTGVVALGLLTCLLAMLLAGRIRLRRIDAFCTCLWALLLGLHLAEQHLQAASPSWLDTLKFSTTSLCCLVGFTAAVATRKATGPRRFRPRRFFPGDSAGLFPTSPSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSLGTIPSLTRADSGYLFSGSRPPSQVSRSGEFPVSDYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQKLLLFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPPHVPRKPPLQDVKHALDLRSKLERGSACSNRSIKKEDDSSQSSTCVVDTTTRGCSEEAATWRGRFGPSLVRGLLAVSLAANALFTSVFLYQSLR", "sequence_length": 666, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0a5d17ef11a9cc8ba839bc4f966863582f15a18681be9af7e48649ec1226cf62", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5SNT2.json", "taxon_id": "9606", "uniprot_accession": "Q5SNT2", "uniprot_release": "2026_03" } ], "pfam_id": "PF09779", "short_name": "Ima1_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cc149-pf09789.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09789", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cc149-pf09789.yaml" } ], "pfam_ids": [ "PF09789" ], "protein_name": "Coiled-coil domain-containing protein 149", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANQLRERHQSLKKKYRELIDGDPSLPPEKRKQANLAQLLRDSQDRNKHLGEEIKELQQRLGEVQGDNKLLRMTIAKQRLGDEEIGVRHFAAHEREDLVQQLERAKEQIESLEHDLQASVDELQDVKEERSSYQDKVERLNQELNHILSGHENRIIDVDALCMENRYLQERLKQLHEEVNLLKSNIAKYKNALERRKNSKGQNKSSSSALTGVLSAKQVQDLLSEDHGCSLPATPQSISDLKSLATALLETIHEKNMVIQHQRQTNKILGNRVAELEKKLRTLEVSGLWSLPGLSYNVSIGFGSMFFLKYLCLWLIAVH", "sequence_length": 319, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "26b1642de2781c303209e1814edd7a6109305119c81ccda545a17aa8912e98b0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0VCP9.json", "taxon_id": "9913", "uniprot_accession": "Q0VCP9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cc149-pf09789.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09789", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cc149-pf09789.yaml" } ], "pfam_ids": [ "PF09789" ], "protein_name": "Coiled-coil domain-containing protein 149-B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANQLRERHQGLKKKYRELIDGDPSLPPEKRNQVNLAQLLRDSREHNKQLSEELKELKQRLAEVHGDNKLLRMTIAKQRLGDEEVGTRHFPAHEREDLVQQLERAREQTEALEQSLKAATDELQDVRAERNVYQEKAHRLNLEINHILGSHENRILDIDALCMENRYLHERLMQLQEEVSLLKSNVMKYKSALESKKNCKVYGKSNSSALTGVLSAKQVQELLLSEENGCSLPVTSQSISDLKSLATALLETIHEKNMVIRHQRQTNKILGNRVAELERKLKTLEVSGLWSLPGITYNVSLGLGRRKAVIVLSDSQHVQSTTEQSVHLTPEAMVADEEIVTGEEVTEDTGLSADFSQDECQAGAVELNQNSDYFTHTYSVSATPQVSTPAENIQPVESMQSKTLALCDSERSACTAERSEQHDEDLQSGGHQSMSTEASLKALEEQAVENDNFSGDCESQGALEDSQPVTSETSGSFDCISGSESCTAEQQTERSIEEETEHASLNTSPPEQTSPHQECPSS", "sequence_length": 522, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2c109667c277a091a2c822d907d771273c59d5940fc5dcd535757a60eaef6e6c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6DH86.json", "taxon_id": "7955", "uniprot_accession": "Q6DH86", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cc149-pf09789.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09789", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cc149-pf09789.yaml" } ], "pfam_ids": [ "PF09789" ], "protein_name": "Coiled-coil domain-containing protein 149", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANQLRERHQSLKKKYRELIDGDPSLPPEKRKQANLAQLLRDSQDRNKHLGEEIKELQQRLGEVQGDNKLLRMTIAKQRLGDEAIGVRHFAAHEREDLVQQLERAKEQIESLEHDLQASVDELQDVKEERSSYQDKVERLNQELNHILSGHENRIIDVDALCMENRYLQERLKQLHEEVNLLKSNIAKYKNALERRKNSKGQGKSSSSALTGVLSAKQVQDLLSEDHGCSLPATPQSISDLKSLATALLETIHEKNMVIQHQRQTNKILGNRVAELEKKLRTLEVSGLWSLPGGKDTILFSDPTLPSGQRSRSPLLKFVEQPTENKADPKDGEAQKQEEDESCAAAEALTAPEDAGRPAVNSPANQSRGNQCKLFHPSLPQLPSEEEVNSLGREIIKLTKEQAAAELEEVRRESPIEGQRSETGPAPPGLAIQGELPKSHLDSFEASRPAAKASTPEDGKGIPEGGGMRSTVKT", "sequence_length": 474, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fccc8bc6c96b51295b88a78c2909823adf43d8de252f2add469b45672ec63088", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZUS6.json", "taxon_id": "9606", "uniprot_accession": "Q6ZUS6", "uniprot_release": "2026_03" } ], "pfam_id": "PF09789", "short_name": "CC149", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Verticillium dahliae (strain VdLs.17 / ATCC MYA-4575 / FGSC 10137)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/but2-pf09792.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09792", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/but2-pf09792.yaml" } ], "pfam_ids": [ "PF09792", "PF22799" ], "protein_name": "Small cysteine-rich protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRYTLASLASLAAAAQGLVTRGDQCPFHLKAAGSVSGNIGQLSSGQARIGLSPTTFKLEGDTAWDSQGRGCWWTPPTKLLQCDIGQIPEKGWKFECDGSVSFNGQKEFYQCEADNGQYNIYLLNNQGQNCAKVTLTSDGCLPGCPKPKPTEAPPTCPPKETVTVTQVITQGCPTPTPQIQVKVVSPPPAPQPVPPPPSPKTCPTNLSGPYEFPHLIIPVDSSNPDKAPGTSYNGQADSKISSIFNFDIPGSYKGKTCSLVFLFPKKEDLETSDWKFSGSGELVFSKLKGVATQKTTANNAPAVESELKTVQIAPGNGYSIATFDCPAGTAVSFQMKSKGDTSLWFFEDYNPSPLGLYITVC", "sequence_length": 361, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c0a1e35d9e810b0b789594f6b0eb00f36b967fbab366275239ec4cdafcca7367", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G2WTI6.json", "taxon_id": "498257", "uniprot_accession": "G2WTI6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/but2-pf09792.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09792", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/but2-pf09792.yaml" } ], "pfam_ids": [ "PF09792" ], "protein_name": "Uncharacterized but2-like protein C27D7.09c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLTSIPIASTLLSLLAASGTLASPLHKRDDPLNNKQFGLMSIHSGNSYVHLHPFYVGDSGAIYLDPTDGTSTSAVFSMSNGRLVVGNLYASVDSNGTTIFKSDANAASTKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNPNCAGIAIEAFVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATATAKAASAAASSAVYPLFPHGIRLIDSANPSSNSGNVYSPVVFQKQNNHTNTIFTFDVPQVSGSCELNLHLDTSGFPITVEGSNGVGQFILFNLSSVANDSTVYSNRPNRIAEIGRFNCSSSGCDYATNVTCPNSYTAVSYEMMALTDDSYLSFFEEADPLEGLTLRV", "sequence_length": 383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6a94b35cb6246d9ea69030ec599e3429f91dbca8acafd592d52bd079f2227a29", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O42663.json", "taxon_id": "284812", "uniprot_accession": "O42663", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/but2-pf09792.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09792", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/but2-pf09792.yaml" } ], "pfam_ids": [ "PF09792" ], "protein_name": "Uncharacterized but2-like protein C27D7.11c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFSSIPIASTLLSLLVASSVTASPLRRRDDPLNGRQFGLLALHSGNEYVHLHGFYVGDSGSVYLDPADGTDDAATFTMSNGQLSVGNRYASVSANGEIVFKSDTNSTSSGFSVGEAISSGYSLKYNGTESAVACPSLVNNQVYQVFFGVGNGNPSCVGIAVLAVLPQPISSSSTYNSTTSSYHNSTSTPPPTITSTKASTVTSTEATTVTTTTAVTVTATETYTVTATNGGSTITSTGASTVTSTQPSTVTSTQRKNTATTTKTTTYVGPSPSASSVVAYTTKCIVVPVITTAASQSEAATPSPSAAVYPLFPHGIRLIDSTKPEANSGNVYSPVVFQKQNNHTNTIFTFDVPQVSGSCELNFHLDTSGFPITVEGVNGTGRFILFNLSSVANDSTVYSNRPNRIAEIGRFNCSSSGCDYATNVTCPDSYTAVSYEMMALTDDSYLSFFEEADPLEGLTLRV", "sequence_length": 463, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fabaccd21f79f910bb4a0c136818700ab20ea0d5de2368cc731d4a77e97a6b73", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O42665.json", "taxon_id": "284812", "uniprot_accession": "O42665", "uniprot_release": "2026_03" } ], "pfam_id": "PF09792", "short_name": "But2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pet100-pf09803.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09803", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pet100-pf09803.yaml" } ], "pfam_ids": [ "PF09803" ], "protein_name": "Protein PET100 homolog, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGVKLEIFRMIIYLTFPVAMFWVSNQAEWFEDDVIQRKRELWPPEKLQEIEEFKERLRKRREEKLLRDAQQNS", "sequence_length": 73, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "099cfde25c15aa708fab75fbe5258702226145a4ba89ad02d3e18f1d135dd707", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DJ07.json", "taxon_id": "9606", "uniprot_accession": "P0DJ07", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pet100-pf09803.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09803", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pet100-pf09803.yaml" } ], "pfam_ids": [ "PF09803" ], "protein_name": "Protein PET100 homolog, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGVKLEVFRMSLYLTFPVVMFWISNQAEWFEDYVVQRKRELWPREKEGQRQELEEFKQKIRKQKEERLLQAAQQSS", "sequence_length": 76, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "33ac8f6dac219738d5c59536384ea232bcef959be587035bb1b22d85dbec5581", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DJE0.json", "taxon_id": "10090", "uniprot_accession": "P0DJE0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pet100-pf09803.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09803", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pet100-pf09803.yaml" } ], "pfam_ids": [ "PF09803" ], "protein_name": "Protein PET100, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGLFNNFKFKYTRAQLEIFRFSFCLLAPVAVMYYIGTDTDKKLNVPGFWPDPATLNQIPKEPYEIKAELARMKKERLEKRLRLEKKIQEEFGLDLEEEKEKIKRDLALKKG", "sequence_length": 111, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "42326e7b2e42d64861ef73023de32193654b52620ad7bf1f3ecc4ad43ecce478", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38958.json", "taxon_id": "559292", "uniprot_accession": "P38958", "uniprot_release": "2026_03" } ], "pfam_id": "PF09803", "short_name": "Pet100", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dennd11-pf09804.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09804", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dennd11-pf09804.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A4D1U4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09804" ], "protein_name": "DENN domain-containing protein 11", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ae5418e4a80926faba09235c2d147e9575d5116b4f6428ad90830684ed49f4b8", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVEQGDAAPLLRWAEGPAVSLPQAPQPQAGGWGRGGGGGARPAAEPPRRREPEEPAAPEVLLQPGRLELGDVEEDQVVAVFVVTFDPRSGNMVEWCLPQDIDLEGVEFKSMASGSHKIQSDFIYFRKGPFFGLACFANMPVESELERGARMKSVGILSPSYTLLYRYMHFLENQVRHQLEMPGHYSHLAAFYEDKKGVLHAGPGRGSSLPPVYWLPSIHRYMYPEMKITHPAGCMSQFIKFFGEQILILWKFALLRKRILIFSPPPVGVVCYRVYCCCCLANVSLPGIGGTIPESKPFFYVNVADIESLEVEVSYVACTTEKIFEEKRELYDVYVDNQNVKTHHDHLQPLLKINSADREKYRRLNEQRQMLLYSQEVEEDYNPCEEDLFVLFFLEQNNRIFQTLLEVSASQDKTLTAEHARGMGLDPQGDRSFLLDLLEAYGIDVMLVIDNPCCP", "sequence_length": 455, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ae5418e4a80926faba09235c2d147e9575d5116b4f6428ad90830684ed49f4b8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4D1U4.json", "taxon_id": "9606", "uniprot_accession": "A4D1U4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4484-ipr028115.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028115", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4484-ipr028115.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4484-pf14831.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4484-pf14831.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dennd11-pf09804.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09804", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dennd11-pf09804.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P36090", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09804", "PF14831" ], "protein_name": "Uncharacterized protein ANR2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6e3d73b222de30c8a264fa1c01b4e871b7828617cbda544d8c09d7069c0bfdff", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNSGGEEPTIKPNVFNITQLLNSNGEKPGIACIFLSKFDMKKGNIIIWSKSINGAAIDLSNIEFKSLPAGIHEQTDDVVNFVVPKELDVCQTAKTTTYDYGIAYFKQNSFDIIENDNRIDRSKVQMFSLGVIIDVQNASSDSKKHFYKEIYHAYAANRYSSYLESLLGQWIRQRDLDKFDIFEKFFDENNQGHMAENSVEVFEHSPKERRHLVEYLPYWTRKLGPLIFPLWKASLLQSRILILVPQGESFELCNSLAYCVFLISMLPKNLIGNHVSDEYIKPIFTVSTSDIPFLESFKKGNGYVATTSEEILLYKPEIYDIVVKLTSSSTIEESPEKEVEILTASGEQNKATPLDLEVYEKLILGELQEDASTNATCRHHEVTEPISWLQFLIDGFFLLTTAGYLVAPYHLANNFKIPRHVSGPEPNNSEIQIAENLVRYFHRRTSNLYNDLKDVIQKSENIDSEQPITIAASFLTKLNLDCFSKQDHQFVKDIALKWFQRSIDISNLPECLGNLC", "sequence_length": 516, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6e3d73b222de30c8a264fa1c01b4e871b7828617cbda544d8c09d7069c0bfdff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P36090.json", "taxon_id": "559292", "uniprot_accession": "P36090", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dennd11-pf09804.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09804", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dennd11-pf09804.yaml" } ], "pfam_ids": [ "PF09804" ], "protein_name": "DENN domain-containing protein 11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVEQGDAAPLLRWAEGPAVSVPQDPALQAGGWVRGGSGGGRVAAEAPRRREPEEPAPPEVLLQPGRLELGDVEEDQVVAVFVVTFDPRSGNMVEWCLPQDIDLEGVEFKSMASGSHKVQSDFIYFRKGPFFGLACFANMPVESELERGARMKSVGILSPSYTLLYRYMHFLENQVRHQLEMPGHYSHLAAFYEDKKGVLHAGPGRGGSLPPVYWLPSIHRYMYPEMKITHPAGCMSQFIKFFGEQILILWKFALLRKRILIFSPPPVGVVCYRVYCCCCLANVSLPGIGGTIPESKPFFYVNVADIESLEVEVSYVACTTEKIFEEKRELYDVYVDNQNVKTHHDHLQPLLKLNSADREKYRRLNEQRQMLLYSQEVEGDYSPCEEDLFVLFFLEQNNRIFQTLLEVSASQDKTLTAEHARGMGLDPQGDRSFLMDLLEAYGIDVMLVIDNPCCP", "sequence_length": 455, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fa7964c8b83a309e03664a9bb1a2b2ce1a0ca26f7e3cf2418bca9c740a5a6ae0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0PGW2.json", "taxon_id": "10116", "uniprot_accession": "Q0PGW2", "uniprot_release": "2026_03" } ], "pfam_id": "PF09804", "short_name": "DENND11", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": 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"data/traits/structure/homologous_superfamily/cath/1-10-287-1880-1-10-287-1880.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.287.1880", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-10-287-1880-1-10-287-1880.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-58-730-1-20-58-730.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.730", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-58-730-1-20-58-730.yaml" } ], "pfam_ids": [ "PF09817" ], "protein_name": "Protein zwilch", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSASANLANVYAELMRRCGESYTITYGAPPTYLVSMVGAAEAGKKIVLVFKEDRNGAVARLRTTPTRAAPKKEGSADLDLTGSPLKDDCLVDAIADLSIDLQLDHSNPWKLEEEYQRGIPVDKARSIVCSEFLQLAEGLGSVWFLCDGSDLGQTQLLQYEFNPTHFSRGILSYQGVRPAYLVTSQALVRHHGKTPDETLIENSYQVNPHMRLRCSWTSSAALPLLVNLNDCDVALNHTFRVGDCGPLTQDFMNQLRILVYIREDIVSYHTDVKQGVSRDPTYRCGSGIDMDELRESINQTMTDVSGLIGRYSISNAEFDIEDVVQRAKVRQLTDLTDKLWELLKCCHSYKDLKIAFSMLFQCAARCNIVNTPTNKNRLAKIITELANRRLAMPCLSGAEPLELLLEIGLEKLYKDYEFIYTESKMCSTNLLKDDSSGASMDDGSPQNLPQLRKSLHNAVRGDPTPGAGMRKTLLHHHGAVNSRSTKYAGSDDDAGFKNSHFDEHESTERISKLFQIHCTLEHLLMMHIHLNLANVYNDVCSELLKKPPKLVESIDDQLSDVMDIRLSAHYVRDHLDGKDPYSRHITMRSHNKFRELKTTFYFNSENICPPNLAQCFQCDDKEMVKERTYHSWIYHKIRSLK", "sequence_length": 641, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1dab2bfff5de96ac2df9cc5db67934ab3c49caeb8ac55b8c89a8829fa32635b8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VA00.json", "taxon_id": "7227", "uniprot_accession": "Q9VA00", "uniprot_release": "2026_03" } ], "pfam_id": "PF09817", "short_name": "Zwilch", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09823", "short_name": "DUF2357", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shewanella baltica (strain OS185)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2057-pf09829.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09829", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2057-pf09829.yaml" } ], "pfam_ids": [ "PF09829" ], "protein_name": "UPF0319 protein Shew185_1615", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSLLPISSLLVLLGSASAFAADLNIPMSFEYLALDGKKVESSVFNHKSSLELTPGTHKIAIRYHEMVEDDFSDSQTFVKSAPFIVTLDVDGDYQYYLQAAEGKVVKKPKVYAQNPQIKLTRGDKGDVNFQVVNTNLEEESFVSRLFSGNQAVDVSGTAAAATGAAGAVVAVAPAPVATSATVSATSLTAPVDTSKATAANPQQMLQYWWLQADEKTRKEFMSWAISQL", "sequence_length": 229, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "37332b318f6c165cd8c56fa52e7a9d651ca59ae0ed37365639f8fa3e702955a1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6WLS3.json", "taxon_id": "402882", "uniprot_accession": "A6WLS3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio atlanticus (strain LGP32)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2057-pf09829.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09829", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2057-pf09829.yaml" } ], "pfam_ids": [ "PF09829" ], "protein_name": "UPF0319 protein VS_II0881", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTIQSIALLSAIVAAPSVLADVEIQVPSSVDILAVNEAKPDLDGGLFSSHKTLTLPDGQNQIVFQYQLAFDKGNDREFVDSDAVIATFDATDTTLTFDLPKYRNTAEAKSGFKNLEWSLVDENQNEISVKQDKLVKDGMQIGRKYPQEAKEYNQQGGIAALAIGTTAGATAAVVQPVTLPAKIDGNAANTAEEMLYFWYEKADAETKQKFKDYVNK", "sequence_length": 217, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f432934795d5557e83731d4e7dfe21e495937717376ca072cada0633f1adef8f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B7VSR4.json", "taxon_id": "575788", "uniprot_accession": "B7VSR4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/curli-synthesis-inhibitor-nf047712.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF047712", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/curli-synthesis-inhibitor-nf047712.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/duf2057-family-protein-nf002967.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF002967", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/duf2057-family-protein-nf002967.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2057-pf09829.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09829", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2057-pf09829.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0A8X4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09829" ], "protein_name": "UPF0319 protein YccT", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4e355c9ee5867b5245e6e254f9a632b52f7ea45bde41587a3c433b2901e947a0", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKTGIVTTLIALCLPVSVFATTLRLSTDVDLLVLDGKKVSSSLLRGADSIELDNGPHQLVFRVEKTIHLSNSEERLYISPPLVVSFNTQLINQVNFRLPRLENEREANHFDAAPRLELLDGDATPIPVKLDILAITSTAKTIDYEVEVERYNKSAKRASLPQFATMMADDSTLLSGVSELDAIPPQSQVLTEQRLKYWFKLADPQTRNTFLQWAEKQPSS", "sequence_length": 220, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4e355c9ee5867b5245e6e254f9a632b52f7ea45bde41587a3c433b2901e947a0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A8X4.json", "taxon_id": "83333", "uniprot_accession": "P0A8X4", "uniprot_release": "2026_03" } ], "pfam_id": "PF09829", "short_name": "DUF2057", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2058-pf09831.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2058-pf09831.yaml" } ], "pfam_ids": [ "PF09831" ], "protein_name": "Uncharacterized protein YaiL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKLTLQEQLLKAGLVTSKKAAKVERTAKKSRVQAREARAAVEENKKAQLERDKQLSEQQKQAALAKEYKAQVKQLIEMNRITIANGDIGFNFTDGNLIKKIFVDKLTQAQLINGRLAIARLLVDNNSEGEYAIIPASVADKIAQRDASSIVLHSALSAEEQDEDDPYADFKVPDDLMW", "sequence_length": 179, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "89ff9ee358bea90db13f4a4574815cc4204045d637125c4af943aa1b8dd9ec3c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P51024.json", "taxon_id": "83333", "uniprot_accession": "P51024", "uniprot_release": "2026_03" } ], "pfam_id": "PF09831", "short_name": "DUF2058", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09832", "short_name": "DUF2059", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09834", "short_name": "DUF2061", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09835", "short_name": "DUF2062", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hvfc-c-pf22106.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22106", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hvfc-c-pf22106.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hvfc-n-pf09836.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09836", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hvfc-n-pf09836.yaml" } ], "pfam_ids": [ "PF09836", "PF22106" ], "protein_name": "Multinuclear nonheme iron-dependent oxidase partner protein HvfC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPKSSLKETQQALANAIRLGNADPLNGYAASRLAVYTRLVRNNAFGFIDRCFVEAPLHIEPEYWKNAKENFVQNGNAHSPYFQDIAGEFLLFCQEKEIFDTNILALMDFENTQLLAEVSLAKVPEKFEWNRHSVMQLSGAAYLKSYDVDFLSSDFKQFDDTPIQAIIWRDSDFRIQQQILSELDYWLLSYLQEQPNSLENVLSALNTMVEDSTSIIPLLEQVWMKWVTSEVIYPEQR", "sequence_length": 238, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d1f09013b6b0f1b803fce1f27fa997e564c9b859ca7ad6e5b466be6b8f9b5923", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44267.json", "taxon_id": "71421", "uniprot_accession": "P44267", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain 86-028NP)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hvfc-c-pf22106.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22106", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hvfc-c-pf22106.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hvfc-n-pf09836.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09836", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hvfc-n-pf09836.yaml" } ], "pfam_ids": [ "PF09836", "PF22106" ], "protein_name": "Multinuclear nonheme iron-dependent oxidase partner protein HvfC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQPKSSLKETQQALANAIRLGNADPLNGYAESRLAVYTRLVRNNAFGFIDRCFVEAPLHIELEYWKNAKENFVQNGNAHSPYFQDIAGEFLLFCQEKEIFDTNILALMDFENTQLLAEVSLAKVPEKFEWNRHSVMQLSGAAYLKSYEVDFLSSDFKQFDDTPIQVIIWRDSDFRIQQQILSELDYWLLSYLQEQPNSLENVLSALNTMVEDSTSIIPLLEQVWMKWVTSEVIYPEQR", "sequence_length": 238, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": 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"qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2065-pf09838.yaml" } ], "pfam_ids": [ "PF09838" ], "protein_name": "Uncharacterized protein YjeT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSTIWLALALVLVLEGLGPMLYPKAWKKMISAMTNLPDNILRRFGGGLVVAGVVVYYMLRKTIG", "sequence_length": 65, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "35a90de0fd4b57e493b6c7588a65841249bc0498d3855e5610254a42d5657fb1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AF73.json", "taxon_id": "83333", "uniprot_accession": "P0AF73", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", 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"MEANQCPLVVEPSYPDLVINVGEVTLGEENRKKLQKIQRDQEKERVMRAACALLNSGGGVIRMAKKVEHPVEMGLDLEQSLRELIQSSDLQAFFETKQQGRCFYIFVKSWSSGPFPEDRSVKPRLCSLSSSLYRRSETSVRSMDSREAFCFLKTKRKPKILEEGPFHKIHKGVYQELPNSDPADPNSDPADLIFQKDYLEYGEILPFPESQLVEFKQFSTKHFQEYVKRTIPEYVPAFANTGGGYLFIGVDDKSREVLGCAKENVDPDSLRRKIEQAIYKLPCVHFCQPQRPITFTLKIVNVLKRGELYGYACMIRVNPFCCAVFSEAPNSWIVEDKYVCSLTTEKWVGMMTDTDPDLLQLSEDFECQLSLSSGPPLSRPVYSKKGLEHKKELQQLLFSVPPGYLRYTPESLWRDLISEHRGLEELINKQMQPFFRGILIFSRSWAVDLNLQEKPGVICDALLIAQNSTPILYTILREQDAEGQDYCTRTAFTLKQKLVNMGGYTGKVCVRAKVLCLSPESSAEALEAAVSPMDYPASYSLAGTQHMEALLQSLVIVLLGFRSLLSDQLGCEVLNLLTAQQYEIFSRSLRKNRELFVHGLPGSGKTIMAMKIMEKIRNVFHCEAHRILYVCENQPLRNFISDRNICRAETRKTFLRENFEHIQHIVIDEAQNFRTEDGDWYGKAKSITRRAKGGPGILWIFLDYFQTSHLDCSGLPPLSDQYPREELTRIVRNADPIAKYLQKEMQVIRSNPSFNIPTGCLEVFPEAEWSQGVQGTLRIKKYLTVEQIMTCVADTCRRFFDRGYSPKDVAVLVSTAKEVEHYKYELLKAMRKKRVVQLSDACDMLGDHIVLDSVRRFSGLERSIVFGIHPRTADPAILPNVLICLASRAKQHLYIFPWGGH", "sequence_length": 901, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bb033ffe57b7807f4f35bce26f723a308909f7e17e5897e829a0ef00452dd0e6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Z7L1.json", "taxon_id": "9606", "uniprot_accession": "Q7Z7L1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/schlafen-group-3-like-dna-rna-helicase-domain-ipr018647.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018647", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/schlafen-group-3-like-dna-rna-helicase-domain-ipr018647.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/uvrd-like-helicase-c-terminal-domain-ipr027785.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027785", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/uvrd-like-helicase-c-terminal-domain-ipr027785.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/slfn-g3-helicase-pf09848.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09848", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/slfn-g3-helicase-pf09848.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/uvrd-c-2-pf13538.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13538", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/uvrd-c-2-pf13538.yaml" } ], "pfam_ids": [ "PF04326", "PF09848", "PF13538", "PF17057", "PF21026" ], "protein_name": "Schlafen family member 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFLEDLELNFAECIQDGGKATLGVRQREEMDTTHCMKQNEIISQAVCALLNSGGGVVRVEIENGDYNFERDGVGLNLPPLFRNHLDEMLYGKLFLIYVSSWDVAASHVRLATLCSNLYHRCGTFTEVMDPEKALKFLKRVQDPRILGDSDSLNLQEAPVDDAQMILASDLFHSPQLQYLEKLNFTKSSHVEFQMFSADLSQGIRERLPKCVSALANSEGGYVFFGVHDETRHVIGCEKEKINCTNLKSTIDACIRKMPVYHFCGQNHKVQYELKFLEVYDKEALHGYVCAIKVERFCCAAFAKAPDSWEIKDNNKKPLTANDWASRMIEINPDLSSFPQMIPWKSMLNTTPCSKTVFTHKYLKCVEDLQKDYFPVSPNRITYTPESVYKDLFADYRGLRNLINMEMRCFSQGILIFSHSWAVDLGLQRRQDVICDALLISPNNVPILYTICNKWDLGNRHYSMKVARTLKQKLVNMGGYPGRLGIIPLVLPLGSHQRVRNDLEMPVYPESYNFITTQQVEALLQSLVIILFGFRPLLNEELNLESETVALLSDQQYGLLSTNLSKHREMFVHGLPGSGKTTLALMIVGKIRNVFNCQADNILYICENQSLKRFIVRKNVCQAVTRKTFMKNTFDNVQHIIVDEAQNFRTEDGNWYAKAKAITQRARDGPGVLYIFLDYFQINHLCCSGLPELQHQKPLLKLTRMLRSGDNITSYLQDIMHQIRENPPPNVPQEALMVGEELEWGPDVTGNLEITDNLNLEQMSVYVAEKCQSLWRSGYFTDVAVLFTRARDIEKCRDKLLLAMRRRSMSQLAEEPSLLVQVREGLDSLGSHVVLESVHRFSGMERSIVFGIIPMGSETAIFYNALLCLASRARTHLYIVKVVF", "sequence_length": 884, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "226f0b674ed9302f4577123323f4ae7b87d701d1cf1c6d26dbd84a25c7a147d2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CBA2.json", "taxon_id": "10090", "uniprot_accession": "Q8CBA2", "uniprot_release": "2026_03" } ], "pfam_id": "PF09848", "short_name": "SLFN-g3_helicase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2076-pf09849.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2076-pf09849.yaml" } ], "pfam_ids": [ "PF09849" ], "protein_name": "Uncharacterized protein BU181", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDEEKNLIENLFHRLKKTELNSPERDDAADELIQRLAKKQPTSSYYMAQTILIQETAIKKMSIELEELRKKIKILNREETNKKPSFLSNFFKKKSPSEIISNDNNILKKKENILPSNYSSSPISPTTQTSPVINNTRSSSFLGNALQTATGVAGGMILGNMLMNVFSHTKPEEDIFDTVKQSSSDEYTENNFLNNNTDNDLINYSYNESDINFRESSEESINNNVDDTDDIDNDNFI", "sequence_length": 238, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5eca8166c308fbed8d76d3d2779576d49212fe344fec8659090ce2285056112b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P57278.json", "taxon_id": "107806", "uniprot_accession": "P57278", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2076-pf09849.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2076-pf09849.yaml" } ], "pfam_ids": [ "PF09849" ], "protein_name": "Uncharacterized protein bbp_170", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNEEQKLIENLFSRLYKAESDFPNRDKNAEQLINDLLRKQPSSSYYMTQTILVQEMIIEKLNAKILELEKNLSMNEKQTKHGSFGFLSGLFKSKKKEIDACNQGNKAGNHKDDISKRPIMDCLNNNVGKTTSVLGRETIYNTSNNSMSGFLSGSLQTAAGVAGGMVMANLLMNLFQHKRPEEEMIDQISHNPTPVSADSDDLVNNNMNNDKHDVASSDYINDEHEYGEHVKNDHQLHDSPLCSDVSDSTSNNNYDESLNFSNDNNNSSFNDFDDDNFI", "sequence_length": 279, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "65a1aced676b647ac83b51c6c223e00cd57ba62a15135aaf48fb79e12cab9198", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q89AS2.json", "taxon_id": "224915", "uniprot_accession": "Q89AS2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2076-pf09849.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2076-pf09849.yaml" } ], "pfam_ids": [ "PF09849" ], "protein_name": "Uncharacterized protein BUsg_175", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKDEEKNLIENLFHRLKKIELNCSERDDTADVLIQNLVKKQPYSSYYMVQTILIQETAIKKMNLKIEELKNQISILNSDQVNKKPSFLSNFLKKDPGSKTISYDNTIWKKNQNNLESCNTNIPSSSAATTRNSGFLKNALQTATGVAGGMILGNMLMNLFNHTTPEEEIFDNINQSSASDIDNEYDSIQNNHSDLVNYDNQNEPLENYSDDNNFSNFDETEHVDDSEMNDDNFI", "sequence_length": 234, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4b342c843d62e0059e8845d332d114855d62f7767ac17da429f057c8503b180f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8K9W1.json", "taxon_id": "198804", "uniprot_accession": "Q8K9W1", "uniprot_release": "2026_03" } ], "pfam_id": "PF09849", "short_name": "DUF2076", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09850", "short_name": "DotU", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bph-3-pf14470.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14470", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bph-3-pf14470.yaml" } ], "pfam_ids": [ "PF09851", "PF14470" ], "protein_name": "Uncharacterized protein AF_0689", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVWLAELPDEILENLYPGEDVLYSVKKKLYTELKPKYLIVTDRRIIYLDQKILGRYDLIDIPYEKLEFVHFKKGKIGAKFIIRNEEGEEIVLTWMEKDEAEKAIEAIRDAINAIAVEPVSIQKRKGILGFELELSKPKEFITRTYPQAVAKAAPKEDPIERIRKLKELYESGVISREEFEEKKRKLLDQI", "sequence_length": 190, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a10072c89d33b98029d798efb19369601abb60c4eaf0f62bbcd0df86b362ce6b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O29568.json", "taxon_id": "224325", "uniprot_accession": "O29568", "uniprot_release": "2026_03" } ], "pfam_id": "PF09851", "short_name": "SHOCT", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09852", "short_name": "DUF2079", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/duf2080-family-transposase-associated-protein-nf033496.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF033496", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/duf2080-family-transposase-associated-protein-nf033496.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2080-pf09853.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09853", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2080-pf09853.yaml" } ], "pfam_ids": [ "PF09853" ], "protein_name": "Uncharacterized protein MJ0362", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIRKKTWRLPKDATISFKGVVKPIGNSGMILIPKDYVGCKVLVTILDELGNEEFEIVETEKS", "sequence_length": 63, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f557fbe85d0f8e30572060c764790363663d8c9d677db10fceb55a8b0619ecf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57808.json", "taxon_id": "243232", "uniprot_accession": "Q57808", "uniprot_release": "2026_03" } ], "pfam_id": "PF09853", "short_name": "DUF2080", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/zn-ribbon-13-pf09855.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09855", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/zn-ribbon-13-pf09855.yaml" } ], "pfam_ids": [ "PF09855" ], "protein_name": "Uncharacterized protein YpzJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNKGCIKCGSTEAGQKEIATTGTGLSKLFDVQHNRFLVVYCKNCGYSEFYNKESSTAGNILDLFFGG", "sequence_length": 68, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f367396ce9aa3c93298e89d917f14356d248846b4b4a6e587b0bc77141586fc0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0H447.json", "taxon_id": "224308", "uniprot_accession": "C0H447", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/zn-ribbon-13-pf09855.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09855", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/zn-ribbon-13-pf09855.yaml" } ], "pfam_ids": [ "PF09855" ], "protein_name": "Uncharacterized protein MJ1230", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVIFMEKRWKCPKCGNTEFFEKEVAMTGTGLSKIFDIQHNEYIVITCKKCGYSEFYDKSIVKSKDNLMNILDIFFG", "sequence_length": 76, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9d9797a673256a6b9ea515f5976577227c8bab12111e56fb2dcc9c5ebec7f24e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58627.json", "taxon_id": "243232", "uniprot_accession": "Q58627", "uniprot_release": "2026_03" } ], "pfam_id": "PF09855", "short_name": "Zn_ribbon_13", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)", "origins": [ { "cited_uniprot_accession": "Q3J4E6", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/ethylmalonyl-coa-pathway.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "KEGG:M00373", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/ethylmalonyl-coa-pathway.yaml" } ], "pfam_ids": [ "PF01381", "PF06114", "PF09856" ], "protein_name": "Propionyl-CoA carboxylase regulator", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQKLYAGAKLRELRVKLGLTQKVFAERLGASLPYLNQMENNHRPVSATVVLALAQEFGVDVTKLTTSEAERIVTDMREALADPVFTDSPPLADLRLVASNAPAFARAFLDLHRAYRQTHERLASLDEALGRDEADLRPSPWEEVRDFFHYCDNYLDAVDRAAEHYAAPGGVRRDVFSAAMETLTRAGLDLQISDMPAIRSREGNALRLSARAAAPTQRFQLLHQVALLTQNDLLEATLDLARFQTAEAREIAKIGLANYFAGAALLPYRPFLQAAAETRHDLERLADLFGASIEQVAHRLSTLQRPGAKGVPFFFVRVDQAGTITKRHSATRFQFARFGGACPLWNVHRAFETPGRFLRQLAQTPDGVRYLLLARDVSKPGGSFTAPVRRYAIGLGCEVQHADALVYADGLDLKGSFEPIGISCRICDRQECHQRSVPPLEKRLRVDPDRRGLLPYEIVD", "sequence_length": 461, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f60a89bf8b56520ee8811c0fbd8975f17040d3f4d1d56ab5885de8bf052a8cd4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3J4E6.json", "taxon_id": "272943", "uniprot_accession": "Q3J4E6", "uniprot_release": "2026_03" } ], "pfam_id": "PF09856", "short_name": "ScfRs", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010240.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF010240", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf010240.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yjhx-toxin-pf09857.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09857", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yjhx-toxin-pf09857.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q2EEU2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09857" ], "protein_name": "UPF0386 protein YjhX", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "9b25733b3e41ac08ca76caf94f0e71929f78ec41033152c978c965342bce8f98", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLIKSVNGQPYRINTTELNKVRAQLDNR", "sequence_length": 85, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "9b25733b3e41ac08ca76caf94f0e71929f78ec41033152c978c965342bce8f98", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2EEU2.json", "taxon_id": "83333", "uniprot_accession": "Q2EEU2", "uniprot_release": "2026_03" } ], "pfam_id": "PF09857", "short_name": "YjhX_toxin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2085-pf09858.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09858", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2085-pf09858.yaml" } ], "pfam_ids": [ "PF09858" ], "protein_name": "Uncharacterized protein MTH_518", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVCMRFRYICHRKPERTFSFRGHYFPVCSRCTGIYLGAFTYFLYAFLIPVKYTAATVLLALLLVIPTFIDGFTQLMGYRESNNVLRFSTGLPAGIGLAVLTKVLKHLILHI", "sequence_length": 111, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bd815ac9487ceae2874371b4bd8cb20eb051a506b458331d38e7a100327d0cfd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O26618.json", "taxon_id": "187420", "uniprot_accession": "O26618", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2085-pf09858.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09858", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2085-pf09858.yaml" } ], "pfam_ids": [ "PF09858" ], "protein_name": "Uncharacterized protein MJ1492", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKYYLIVLISFLIFYLSIFLAPYFAYLGETSNFWKFISICLYAVYSLICHQMPQRSFFIFGHKMAVCARCFGIYTGVLVGMIIYPFIKKLDDFKIPNKWYLIIALIPMAVDGTTQLIGLRESFNELRFITGFIAGFTVVFYILPIFFEMIYKKFK", "sequence_length": 156, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4f256a97aa9517a9c0910e5dce44721f9102c273b678622760afc2efce38dd48", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58887.json", "taxon_id": "243232", "uniprot_accession": "Q58887", "uniprot_release": "2026_03" } ], "pfam_id": "PF09858", "short_name": "DUF2085", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09859", "short_name": "Oxygenase-NA", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09860", "short_name": "DUF2087", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIMB 9385 / NCA 3814 / NCTC 13789 / WDCM 00135 / 2032)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lar-n-pf09861.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09861", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lar-n-pf09861.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lara-c-pf21113.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21113", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lara-c-pf21113.yaml" } ], "pfam_ids": [ "PF09861", "PF21113" ], "protein_name": "Lactate racemase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANIEIPYGKSKLAFDLPDERIQGILRSKAGSYKVNMSEEDIVKRALENPIGTKRLQDLAEGKKNIVIITSDHTRPVPSRITLPLLLDEIRKKNKSANVKILIATGFHRGTTLQEMKAKFGEDLVENEQFVVHDSRNSENMELIGTLPSGGKLEINKLAVEADLLVAEGFIEPHFFAGFSGGRKSILPGIASVQCILANHCSEFIKNPYARTGVLENNPIHRDMIYAAKKANLAFILNVVIDSSHKIVNAFAGHSEKAHLKGCEFVSEIATVNAKPADIVITSNGGYPLDQNIYQSVKGMTAGEAACKDGGVIIIAAECADGHGGEGFYRWFKESKDPQDVMNKILSRGRDETLPDQWEAQILARILINHKVIMVTDSKNYEYVKDMFMTPAKDLGEALKIAESIVNNDSKINVIPDGVSVIVREK", "sequence_length": 426, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "66eef0b55465e4756a1e8368e9819300996dde69b5e5c8f15cf9fe1e8bd3ac51", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D9TQ02.json", "taxon_id": "580327", "uniprot_accession": "D9TQ02", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lar-n-pf09861.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09861", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lar-n-pf09861.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lara-c-pf21113.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21113", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lara-c-pf21113.yaml" } ], "pfam_ids": [ "PF09861", "PF21113" ], "protein_name": "Lactate racemase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVAIDLPYDKRTITAQIDDENYAGKLVSQAATYHNKLSEQETVEKSLDNPIGSDKLEELARGKHNIVIISSDHTRPVPSHIITPILLRRLRSVAPDARIRILVATGFHRPSTHEELVNKYGEDIVNNEEIVMHVSTDDSSMVKIGQLPSGGDCIINKVAAEADLLISEGFIESHFFAGFSGGRKSVLPGIASYKTIMANHSGEFINSPKARTGNLMHNSIHKDMVYAARTAKLAFIINVVLDEDKKIIGSFAGDMEAAHKVGCDFVKELSSVPAIDCDIAISTNGGYPLDQNIYQAVKGMTAAEATNKEGGTIIMVAGARDGHGGEGFYHNLADVDDPKEFLDQAINTPRLKTIPDQWTAQIFARILVHHHVIFVSDLVDPDLITNMHMELAKTLDEAMEKAYAREGQAAKVTVIPDGLGVIVK", "sequence_length": 424, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "81055f40dae6fb13709e489d9b5a636f7e9081ff7004569b85e66301831d8e88", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F9USS9.json", "taxon_id": "220668", "uniprot_accession": "F9USS9", "uniprot_release": "2026_03" } ], "pfam_id": "PF09861", "short_name": "Lar_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09862", "short_name": "DUF2089", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09863", "short_name": "DUF2090", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/lysozyme-inhibitor-activity-go0060241.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0060241", "section": "canonical_examples", "url": 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"data/traits/sequence/domain/interpro/c-type-lysozyme-inhibitor-ipr018660.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018660", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c-type-lysozyme-inhibitor-ipr018660.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mlic-pf09864.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09864", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mlic-pf09864.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/c-type-lysozyme-inhibitor-superfamily-ipr036328.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036328", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/c-type-lysozyme-inhibitor-superfamily-ipr036328.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/c-type-lysozyme-inhibitor-2-40-128-200.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.40.128.200", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/c-type-lysozyme-inhibitor-2-40-128-200.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P28224", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09864" ], "protein_name": "Membrane-bound lysozyme inhibitor of C-type lysozyme", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a2552e5b5a52fc3b63728cd86e50e8b3a2f9b0b56d9394f025a6babaf77b1c13", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTMKKLLIIILPVLLSGCSAFNQLVERMQTDTLEYQCDEKPLTVKLNNPRQEVSFVYDNQLLHLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNCQLQNPQR", "sequence_length": 109, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a2552e5b5a52fc3b63728cd86e50e8b3a2f9b0b56d9394f025a6babaf77b1c13", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P28224.json", "taxon_id": "83333", "uniprot_accession": "P28224", "uniprot_release": "2026_03" } ], "pfam_id": "PF09864", "short_name": "MliC", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09865", "short_name": "DUF2092", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09866", "short_name": "DUF2093", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09867", "short_name": "TagF_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2095-pf09868.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09868", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2095-pf09868.yaml" } ], "pfam_ids": [ "PF09868" ], "protein_name": "Uncharacterized protein AF_1363", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEWKKEKFKKMFPNLFHEIEGSDLPTVLDHLEVCKTIEEAIEIIEYFEKRGEISKEYANFLKSNPSLLKSIIGTRERGEYTRRGLRD", "sequence_length": 87, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f90d558f175dfa4843847ead0e5142d879e23a6cf535cc4a7b569b095aec28c5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O28908.json", "taxon_id": "224325", "uniprot_accession": "O28908", "uniprot_release": "2026_03" } ], "pfam_id": "PF09868", "short_name": "DUF2095", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { 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"ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf2096-n-terminal-four-helical-bundle-domain-ipr056731.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056731", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf2096-n-terminal-four-helical-bundle-domain-ipr056731.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2096-n-pf23100.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23100", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2096-n-pf23100.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kh-duf2096-c-pf09869.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09869", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kh-duf2096-c-pf09869.yaml" } ], "pfam_ids": [ "PF09869", "PF23100" ], "protein_name": "Uncharacterized protein MJ0856", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEMGNGMKDARNLDKQWVVLSELSAELVNRGIKVPEIVFEKLRLANALLSYYILDPHASINILANVERELNYVQSQLFSLCDTELTEKYLDRMIKAIRGEINAKFPVSKSNYNREVKKRGKVEAIRVKLQKEMQIERLSDLGEWHGVIFEYSDEKDKVIIEGNIDRVKRALKDFAFMWKED", "sequence_length": 181, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "39412c3b6803c13704ad676ba5092a61140f2de40222be964e8e17bac7db4ea2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58266.json", "taxon_id": "243232", "uniprot_accession": "Q58266", "uniprot_release": "2026_03" } ], "pfam_id": "PF09869", "short_name": "KH_DUF2096_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2097-pf09870.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09870", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2097-pf09870.yaml" } ], "pfam_ids": [ "PF09870" ], "protein_name": "Uncharacterized protein MJ0540", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEIIDVKNPKEVIEYLNNIDVDEYVEIYFGRVHVEGRLMHYNDGLIRLVHEKYGIIEVEIEKILDDLLELVHSNGEKRVVLRFY", "sequence_length": 85, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "232a63ade3a5de36d7bff467ef46c00a747ad5c47f5afc8499acaabe23f4f4b6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57960.json", "taxon_id": "243232", "uniprot_accession": "Q57960", "uniprot_release": "2026_03" } ], "pfam_id": "PF09870", "short_name": "DUF2097", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii 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"660ff69c8d6e36397b658a60600e78091b7b5bcf999cfe3804aea6c96758feee", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57621.json", "taxon_id": "243232", "uniprot_accession": "Q57621", "uniprot_release": "2026_03" } ], "pfam_id": "PF09871", "short_name": "DUF2098", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/methanogenesis-marker-8-protein-tigr03275.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR03275", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/methanogenesis-marker-8-protein-tigr03275.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2099-pf09872.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09872", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2099-pf09872.yaml" } ], "pfam_ids": [ "PF09872" ], "protein_name": "Uncharacterized protein MJ0054", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDRHVMEALGKARVVVENGRVVEVTEPKIKYCPLFAKHRGIKEITKESIKENIEFRIKDFGLFTKNRVVEESRYIVPFGASEILMSALKRKAIDVAVIVADCAGTIITSNPNLVQGLCGRISGIIETSPILEVIEKIEKAGGVVLNKKTAEINQFEGVKKAIELDYKKIAVTVTNLEDAKRCKSLENDEIKILTFGVHLTGIEGSEEIAKYFDLVTACASKVLREKLKGKIKAQIGKTIPIFALSDFGKEILLERAKDLDKVLISIENLPVLNDNQPKPLI", "sequence_length": 281, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "da43c8d1debce3a1cdfe88f6fae042b43fc36e698ba099c687af558eefa494b5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q60361.json", "taxon_id": "243232", "uniprot_accession": "Q60361", "uniprot_release": "2026_03" } ], "pfam_id": "PF09872", "short_name": "DUF2099", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sepcyse-pf09873.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09873", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sepcyse-pf09873.yaml" } ], "pfam_ids": [ "PF09873" ], "protein_name": "Uncharacterized protein MJ1481", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRVEYSKDLIRKGISTISQLKKAKIRVEKDDKKISYKDAKPGKIDVNEFKKAIYLLIEADDFLYKKAPKHELNEEEAKEFCKLIIKCQEHLNKILANFGFEFEEKEIDEGALYIVSNKKLFKKLKNKNPNLKVVCTEGMLDIEDMRAIGVPEKALEGLKKKVEIARKNVERFIEKYKPEKIFVVVEDDKDELLYLRAKNLYNAEKLDADEILD", "sequence_length": 213, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aa44fdac510d42b3578bcbf7db07bb8dca2427bb701d53a8fa173ed1e51d7baf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58876.json", "taxon_id": "243232", "uniprot_accession": "Q58876", "uniprot_release": "2026_03" } ], "pfam_id": "PF09873", "short_name": "SepCysE", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09874", "short_name": "DUF2101", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/methanogenesis-marker-6-protein-tigr03272.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR03272", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/methanogenesis-marker-6-protein-tigr03272.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2102-pf09875.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09875", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2102-pf09875.yaml" } ], "pfam_ids": [ "PF09875" ], "protein_name": "Uncharacterized protein MJ0498", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMKKTKVIVLAENALTTPGKLVRYINTLNQPVIVKETCFGAYIEGEEELVDKLAQEIRNYERNRIFCKDRGYAIWDKRRCRAFRGGGPREGFHQLEAEQAVLDKIGLALDKIDKEGIKPMEEVLAKENELIKRETKIPVEEFKNIIEKVLGSKNEA", "sequence_length": 156, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5b4190059646f16d4c9b5ef3d78fe57787fdb0fb9e3c03fd8a1b96a8aadd73ac", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57921.json", "taxon_id": "243232", "uniprot_accession": "Q57921", "uniprot_release": "2026_03" } ], "pfam_id": "PF09875", "short_name": "DUF2102", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09876", "short_name": "DUF2103", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ehal-pf09877.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09877", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ehal-pf09877.yaml" } ], "pfam_ids": [ "PF09877" ], "protein_name": "Energy-converting hydrogenase subunit EhaL family member MJ0518", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGLFELNLAIILFIIGNFIGLEYSYRKYSSPYVEKGIDKFALAISVFGGILINSPLYMLGCLLIGFPLGMRPGYGRVEFVVGLAVALFLYFLRW", "sequence_length": 94, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dadcd36f50f4145e2f4d811c2be47705ca512e15cb58339b1ba035f33daaab20", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57938.json", "taxon_id": "243232", "uniprot_accession": "Q57938", "uniprot_release": "2026_03" } ], "pfam_id": "PF09877", "short_name": "EhaL", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ehag-pf09878.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09878", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ehag-pf09878.yaml" } ], "pfam_ids": [ "PF09878" ], "protein_name": "Uncharacterized protein MJ0523", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGEMENIIYSIYHPTILVGFAIGILSLLAIGFQKNDLHALILTDVVECAMLIIIAGVGTDLAEALILPGLVVSLAELLAVSEVLITRKYLKSKRPKPKSYKLFEEFKLPLYTGELKYDIHMEILKTSPKFLAIILIVYGAILSGFTGGAVIATGLLFYALSQRVIGVEISEELKTMWEGISGLSGIAWALWIFGFIGFFVFPDKWLLCLLMAGLGLVIKVGSKLGLIGYIGEVR", "sequence_length": 234, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9ea8d8ec226e7f6d7b4ad0c448475200fffb76c2b92729b71e555c62d96c1896", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57943.json", "taxon_id": "243232", "uniprot_accession": "Q57943", "uniprot_release": "2026_03" } ], "pfam_id": "PF09878", "short_name": "EhaG", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ehaf-pf09879.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09879", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ehaf-pf09879.yaml" } ], "pfam_ids": [ "PF09879" ], "protein_name": "Uncharacterized protein MJ0524", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRWVIMKKLGKIWNYLSKPEIVPRIFSVFLALVFIFGLLMPHYLNPNQLYPKPIPHSQTLKTPLAPYDRGGIPLKEPAELKAQYPQYEPNLGKITAYLTPIAEWIKDKTYYFGTTIVSTPGGILDEILYYTRGMDTVLESSILLISFIIFSWLFFNKD", "sequence_length": 158, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "da966372d51cfd4481fc2036965be0cd4a941d5af33a9f76ae1e11d72dfde1ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57944.json", "taxon_id": "243232", "uniprot_accession": "Q57944", "uniprot_release": "2026_03" } ], "pfam_id": "PF09879", "short_name": "EhaF", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ehae-pf09880.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09880", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ehae-pf09880.yaml" } ], "pfam_ids": [ "PF09880" ], "protein_name": "Uncharacterized protein MJ0525", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLNVEVPTIGVSLIFLAYDEALALMTFIAVNAVLSLILIRAVILDAEYKENNQ", "sequence_length": 53, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b884c71d93b3d1fd012749c04a35309756b117fc9bdff38536d269b2eedfd176", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57945.json", "taxon_id": "243232", "uniprot_accession": "Q57945", "uniprot_release": "2026_03" } ], "pfam_id": "PF09880", "short_name": "EhaE", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ehad-pf09881.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ehad-pf09881.yaml" } ], "pfam_ids": [ "PF09881" ], "protein_name": "Uncharacterized protein MJ0526", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVLPLVSGICCILGGIGVILHTNPINKIIMLALLEIGMIGLIVSCYYLDIAIVSSLCEPICTVILLLGYLKYLTTVKKKKRYGRNLPILSK", "sequence_length": 92, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "27868ab4ae040594e5c828e77bbdcc37d0327130e71c9f4a52fda7b274a614d8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57946.json", "taxon_id": "243232", "uniprot_accession": "Q57946", "uniprot_release": "2026_03" } ], "pfam_id": "PF09881", "short_name": "EhaD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ehac-pf09882.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ehac-pf09882.yaml" } ], "pfam_ids": [ "PF09882" ], "protein_name": "Uncharacterized protein MTH_386", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLIMLIQITGIIVVLMALRTLLAQDRAERLLYLNAMSFGISAMIALYVGTAFGAVLATVYFVASTITSNAIAHTLDRVGEEMVIED", "sequence_length": 86, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6063b7a03f5ae7b55774297fa4dbc1a64ebe5961275b2134aed6c4374b31db2d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O26486.json", "taxon_id": "187420", "uniprot_accession": "O26486", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ehac-pf09882.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ehac-pf09882.yaml" } ], "pfam_ids": [ "PF09882" ], "protein_name": "Uncharacterized protein MJ0526.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMDIVEIIIGFIALLMTARIFLERSRARKLLYLCCLSFCISALIALYVDSPMGGIVAITYFICSTISSNAIAYTIEQTKHIE", "sequence_length": 82, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c0c3c84dd2794024280e622dda270cc8c31ed252048857cee2b2f0acde69c4f0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P81309.json", "taxon_id": "243232", "uniprot_accession": "P81309", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/putative-monovalent-cation-h-antiporter-subunit-g-nf004928.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF004928", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/putative-monovalent-cation-h-antiporter-subunit-g-nf004928.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ehac-pf09882.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ehac-pf09882.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q57740", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09882" ], "protein_name": "Uncharacterized protein MJ0292", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a6dc7e458c370b627ab2d87835a93eb0650462272fe154ef7445bdc98d6d6b71", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVMLMEQFIGIVKDILVLIASFGILLASYRLWIEKDRKNIIYARIHILGVIDCACFLIFIALGETLLAFVYLILAPFLAHAIAHAAYNDNLSE", "sequence_length": 93, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a6dc7e458c370b627ab2d87835a93eb0650462272fe154ef7445bdc98d6d6b71", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57740.json", "taxon_id": "243232", "uniprot_accession": "Q57740", "uniprot_release": "2026_03" } ], "pfam_id": "PF09882", "short_name": "EhaC", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09883", "short_name": "DUF2110", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2111-pf09884.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09884", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2111-pf09884.yaml" } ], "pfam_ids": [ "PF09884" ], "protein_name": "Uncharacterized protein MJ0405", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIMITISENSEAKELMPIAQAVHILVNKLPVAMRSKNKPGVRLEKGEVVDTNYEGYVLKVAIEKGEVVRATPIIGPYAGLPVIVAPIKDGDNVLGAIGVVDITAGIFEDIVAISRRPELYKFLPEDAFPK", "sequence_length": 131, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a303a48220d73bdb1f0a4e7b14904ac845269bcd41ba9cf38ada3b5761a2bab7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57848.json", "taxon_id": "243232", "uniprot_accession": "Q57848", "uniprot_release": "2026_03" } ], "pfam_id": "PF09884", "short_name": "DUF2111", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/methanogenesis-marker-5-protein-tigr03271.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR03271", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/methanogenesis-marker-5-protein-tigr03271.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2112-pf09885.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09885", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2112-pf09885.yaml" } ], "pfam_ids": [ "PF09885" ], "protein_name": "Uncharacterized protein MJ0404", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKIFIYPPNSLILTDLVERFGHKPLNLNIVIGKLVRNPEIDSPPMNITDEEPKKGLKYAAVEVPSGVRGRMALIGPLIEEAEAAIIMDDAPIAFGCIGCQRTNELTLYLVRRKNIPILRVKYPTNEEEAEILVNKIANFLKSLEENQEN", "sequence_length": 150, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a0fd72e33e75bc8511474a57a23f4e94f3ebab54de14871fbc70335d71c10ff7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57847.json", "taxon_id": "243232", "uniprot_accession": "Q57847", "uniprot_release": "2026_03" } ], "pfam_id": "PF09885", "short_name": "DUF2112", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/methanogenesis-marker-17-protein-tigr03291.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR03291", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/methanogenesis-marker-17-protein-tigr03291.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2113-pf09886.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09886", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2113-pf09886.yaml" } ], "pfam_ids": [ "PF09886" ], "protein_name": "Uncharacterized protein MJ0802", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEIVVHCEDKAGKEIYTKVIQTALEDLLLGKSIIRVEFIAKEKEPYFILGVLPKHTRRAIKLRDFAEIVEQKKEGGKIIYKLKITDETYLPHLLKKIHVIDQPSRFEVVTDSDIDLDMEVYDAGKDFIDKVMDFMGRVFPEGMRIKNTYIDKAIVCIASERPLKDEEIEEALKLKDKLEKMNTAGYY", "sequence_length": 188, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a283b9ad33f25a014aae38e82cf88e856c814c75dc1d96df13923d59c860f474", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58212.json", "taxon_id": "243232", "uniprot_accession": "Q58212", "uniprot_release": "2026_03" } ], "pfam_id": "PF09886", "short_name": "DUF2113", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2114-pf09887.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09887", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2114-pf09887.yaml" } ], "pfam_ids": [ "PF09887" ], "protein_name": "Uncharacterized protein MTH_1153", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIPFKPFILFHLTLFIRFILTPQIQYYIKSGGNHLSFLSRLFGPKPIIAKSRFITIEDTKTAPFTKKTVGSGYSMRPDVYYIVASVELGNTTTKCILTATNLNTSRTYLLDKTVKMTRDIRPPREREEVFGKTVWGVELTKEAVSELVRDTILESLRRAKVDIERDLDFVVRSTGVTAGFGSPEEVGKLIIALADGCLAAGIPPRKMAPALSKENIPERLREFCYLDRVIFDGAVASVIPPTGREVVANEMEGELVTAGIKVGSKWTNVDYRNPCVSLDFGTTLAGRIVNADEPYARTVGNFCGLAGAIPDAIIRGTEMVDCRGGAALDLYKKSILKGANWKKARRHAERIHDEIIDIRKVPANRKRFGTVPVDTEAAYSAGTTLIGCDAGKNGDKLPELTEIGHSIYQEDGIHTLFATLDHVSALIAKRLIDEAFEEGVIEEGSVLGVTGRAGITGTKPSLILEYVKDRFRDCIFVSDALAMGAAVMARCMNSMGTPHKPLGGRQNGPCILGMRRKLQSRKEDKWIE", "sequence_length": 529, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dd2fc083c3f8404eca7fd68593523d75f31ae38d4b0f5fa9ab9a11374b6b7184", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O27221.json", "taxon_id": "187420", "uniprot_accession": "O27221", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/methanogenesis-marker-14-protein-tigr03285.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR03285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/methanogenesis-marker-14-protein-tigr03285.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2114-pf09887.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09887", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2114-pf09887.yaml" } ], "pfam_ids": [ "PF09887" ], "protein_name": "Uncharacterized protein MJ1451", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGIFDVISGLFKKKPKIAYAKSQSVDLIELKRNPYYIVASVELGNTTTKSIITATNMDTGKTYIVSKHVKMTRDVRKPKKGEEVFGETLWGVELTREAVADMVKEVLLESLKKAGLTVDDLHFVVRSTGVTAGFASPEEVGEMIIALAQGCMKAGVPPAKMTPAMTKEQIPKPFDKYSFLDKIIFDGAVTGVLPPTGKEVVANEMEGELVTAGIKVGSKWTDVDFRNPCMSIDFGTTLAGRITNDTLPYAKVIGNLCGLAGAIADAIARGSGKIDEKTGAALDLANIKGKPNEELAKEYAEEMHKYIIIKEVPKDVDRFGTVPVDPKSAEKAGTTLIGCDVGKNGSDLIKLEELGRELVEKSDIPTLMCCLDYVMSEVVRRLVELAYKKGLISEKSAVGITGRAGITGRKPELIIEKLKTLEIWDKVEENVVFVEDGLALGASVMARCMNCLGTPQVPIGGVRGGGCILGLRRKWQKERGMIRD", "sequence_length": 484, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "92434e943c567b2790130ab5ce781a4f5455f66ef873227b31ccebb7d0a72196", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58846.json", "taxon_id": "243232", "uniprot_accession": "Q58846", "uniprot_release": "2026_03" } ], "pfam_id": "PF09887", "short_name": "DUF2114", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanococcus maripaludis (strain C6 / ATCC BAA-1332)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2115-pf09888.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09888", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2115-pf09888.yaml" } ], "pfam_ids": [ "PF09888" ], "protein_name": "UPF0305 protein MmarC6_0221", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSRNFFSKLKEESYDVGIFDLMNAKVYLEKDLTYLPEDYKKGYLEDFFTFFPEVLREIKNKTEEEIEDFEINEEEIKKVDSRICSMGSIGASRDSYEKLVKTVINYLIFINKRPLHALTTRFPGGKQIIEKNGNYYCPIKNAQSNELSICEFCICKDLNEL", "sequence_length": 162, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fbbfd101ac6948aa98652233122084517cba821cea5e4766e8428e4736f3b714", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A9A7B8.json", "taxon_id": "444158", "uniprot_accession": "A9A7B8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2115-pf09888.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09888", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2115-pf09888.yaml" } ], "pfam_ids": [ "PF09888" ], "protein_name": "UPF0305 protein MTH_811", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKGSDALIMALRNMAATLGVYDLMEVRVFLERSCRFVQERYRAIYVDAYMSMVVDSVLDLKAGFSGTPEMDDARYSLRDALKRLDEINAPTIVGLTVLYRTYVKGEPLHPPGTPFPGGFEVEKKDGVHYCPVKDKQSDNPEALCDICIARQSPLP", "sequence_length": 155, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "562986ea27bfbde8490f7e45865693ba4aa8d1f35123363ec62cd75e12072169", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O26902.json", "taxon_id": "187420", "uniprot_accession": "O26902", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf002176.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF002176", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf002176.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2115-pf09888.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09888", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2115-pf09888.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q58062", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09888" ], "protein_name": "UPF0305 protein MJ0646", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "05f8651c3d7e6d2bac149d4aa6beb1923a9e35bd8e0072e312663179626fd191", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKARELFEKLKKELNNFSIYDIMMIRSFIEKDAKYLPPQYKNHYVEAMMKYLIETFNEIRKKSVDEIQDEEIDEEKLNEMLNRIERFRKYYTPDEERFINLSKILCPYLAFIAKKPLHPEYLTFPGNVKIIKKGNNYYCPVKNKQLNEYSLCEFCVCKSIDELK", "sequence_length": 164, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "05f8651c3d7e6d2bac149d4aa6beb1923a9e35bd8e0072e312663179626fd191", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58062.json", "taxon_id": "243232", "uniprot_accession": "Q58062", "uniprot_release": "2026_03" } ], "pfam_id": "PF09888", "short_name": "DUF2115", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09889", "short_name": "DUF2116", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2117-pf09890.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09890", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2117-pf09890.yaml" } ], "pfam_ids": [ "PF09890" ], "protein_name": "Uncharacterized protein MJ0065", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRIGVVIHGPEIIDSGYALKIINLLKKFGEVKAKLGGTMGRVAVIDNNLQDIIDISEKLMPSQSLKKLANNDILILMNYGKSKITGHTFGKIVVERANLNKPIIQIERPGEEDGTIIIWNDDNSKIVKEIANYLSKELNLKIEKCISNGLEVWEKEGRVFRKVHGVDVGEAILVNGIVVGKAKSNEVILIAENGKLVDIIGGELKEGGIEKLKNVDLKKAVIKTGILRRHPTNPKIESKEIDEGYTIIINHAGEDVIEMIKNKGVVAVITIGDDTTTICGDILARFGIKIIGITDGDRDEILKNPVILKGSVIFLIKNMRDDDVGRILEKNLNLNKKYCYQELLDEVKKIFNDNNICYEEFVY", "sequence_length": 363, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "da9b15a16c2a852e50cd2cb0f88219bb001782698422d9ed76d9288110ef4374", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q60370.json", "taxon_id": "243232", "uniprot_accession": "Q60370", "uniprot_release": "2026_03" } ], "pfam_id": "PF09890", "short_name": "DUF2117", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2118-pf09891.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09891", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2118-pf09891.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-40-128-400-2-40-128-400.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.40.128.400", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-40-128-400-2-40-128-400.yaml" } ], "pfam_ids": [ "PF09891" ], "protein_name": "Uncharacterized protein MJ0859", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIMRIPRLYVENAEKHEGRKVVIENGGKVIKFLDKDEEYEGDGKVLYQVIYDDFDNYVLMGTVTKDMIIEYEVGGVRQITYIKKGTKLLEIPAEGYKVYPIVDFGCRILGGHRIAALQSRKGDIRFVNTPVNGIVLFLKEVPAKRENYVFYILPEEEIKFEEE", "sequence_length": 164, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "17052df381f0b004931aea8807bc944a44226d73048a71e8b3fdab82f9d18a1f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58269.json", "taxon_id": "243232", "uniprot_accession": "Q58269", "uniprot_release": "2026_03" } ], "pfam_id": "PF09891", "short_name": "DUF2118", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2119-pf09892.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09892", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2119-pf09892.yaml" } ], "pfam_ids": [ "PF09892" ], "protein_name": "Uncharacterized protein MJ0501", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIMEIFEFKGNGVKKLFIGGLHGNEGKFTEIILKDFVNSLKECNYIGDIVVIPKLVENSKYISTLSEKYYESDEGKTLINIIKKYKPKVYFELHAYKKENYKKLTSNNRKKVPPLIDIGNNVLIASISPILRKRFSKEDFCMTIEIPSWKVYEVKDEILKILKIGAESLRREEIIEKLKKIYPEHIEKAEYFSKKYNLMLF", "sequence_length": 202, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bd558916511073f86ad60dda9ba17f1dae588fd83f4d270084cb56775940685f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57924.json", "taxon_id": "243232", "uniprot_accession": "Q57924", "uniprot_release": "2026_03" } ], "pfam_id": "PF09892", "short_name": "DUF2119", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2120-pf09893.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09893", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2120-pf09893.yaml" } ], "pfam_ids": [ "PF09893" ], "protein_name": "Uncharacterized protein MJ0491", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHLENLLKSLKNTVKKLKTYNFGVSMWKVNIGRLMHALNAFKGSKPLFETDEMLMVKGVCRDEEVEKYGSIKDYLVKKLEKEGFEIVEDIKEIDKFVSRINEILKENPLYPDTFGFERMKESFEMIGCECDYVIAKKRNIMVGVCMYFDKKMKNPKFVEVVGVLLPS", "sequence_length": 167, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "659c25cc7d09023da732d26960c41cf024e3d4b501aadf3bbca56099d131bcad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57914.json", "taxon_id": "243232", "uniprot_accession": "Q57914", "uniprot_release": "2026_03" } ], "pfam_id": "PF09893", "short_name": "DUF2120", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/connectase-mj0548-like-c-terminal-domain-ipr057377.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057377", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/connectase-mj0548-like-c-terminal-domain-ipr057377.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/connectase-mj0548-like-n-terminal-domain-ipr057262.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057262", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/connectase-mj0548-like-n-terminal-domain-ipr057262.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/connectase-c-pf25274.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25274", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/connectase-c-pf25274.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/connectase-n-pf09894.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09894", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/connectase-n-pf09894.yaml" } ], "pfam_ids": [ "PF09894", "PF25274" ], "protein_name": "Uncharacterized protein MJ0548", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLIICYYGKNGAVIGGDRRQIFFRGSEENRKILEEKLYSGEIKSEEELYKLAEKLNIKIIIEDDREKVRKISDSVVCGEVRSLGIDAKRRRVYATKGKCAIVDILNDTVTNQTIKEGFGIVVLGNRFLKKKAEEELKRTAKLFPMMPIQQIEDAIKEIFEKLKWHPTVSKEYDIYSVNKYEKNFEEVIKKDIESLFKYREQLRKQLIDFGKVMSIVNKIVKNGEIGVIKDGKLHLYDDYIAIDKIDPNPKVFKVVDVEGNFKDGDIVVIENGDMKIKGTNEKVTTKYIIIHK", "sequence_length": 293, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95a58b827f66f5aefe67fe83ae20227a08122388581fe48b1d6c86d9516601cd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57968.json", "taxon_id": "243232", "uniprot_accession": "Q57968", "uniprot_release": "2026_03" } ], "pfam_id": "PF09894", "short_name": "Connectase_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/type-ii-site-specific-deoxyribonuclease-activity-go0009036.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/type-ii-site-specific-deoxyribonuclease-activity-go0009036.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2122-pf09895.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09895", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2122-pf09895.yaml" } ], "pfam_ids": [ "PF09895" ], "protein_name": "Putative type II restriction enzyme MjaORF1200P", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKMFICLHNTYSAKQVEEFGRIAYGFDINTIVVTKATASAAQSGIPTLHKMAYKLGKNVLFFEELDDAIEVLRPEKVFLIGNKSICDEKVDFNEVGENDLVVFCGASTGFTKLELEKGLGRYIVENEIGALGNLAIFLYEMSKKI", "sequence_length": 146, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4dd8d58567232adf20657c7f615076080d3bf27e910ad475793baf8f33130f58", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58599.json", "taxon_id": "243232", "uniprot_accession": "Q58599", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2122-pf09895.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09895", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2122-pf09895.yaml" } ], "pfam_ids": [ "PF09895" ], "protein_name": "Putative type II restriction enzyme ApeKORF2002P", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPVEVIPVLHNVSSVQRVVDMARLSYSLGLDTLVVTKAYGGAAQSGVPEAMRLALKLGKSLVVLPELRDAVNLLSPTHVLAVTPSRAERLVGPGGLEGLEGRVLVVFSGGEPELDPSEAAGAIRVYIEGVEGKVGPIAEAALILYFLLRGGGDGRG", "sequence_length": 156, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5c13aa88da9e4484de1f9e8c8d86fed2c54b21423c8077858742bd71fc978f6a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9YAD8.json", "taxon_id": "272557", "uniprot_accession": "Q9YAD8", "uniprot_release": "2026_03" } ], "pfam_id": "PF09895", "short_name": "DUF2122", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2124-pf09897.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09897", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2124-pf09897.yaml" } ], "pfam_ids": [ "PF09897" ], "protein_name": "Uncharacterized protein MTH_862", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKLKEFRGIKEHLGVFREAVKDAERIGFAGVPGVCTPFAQLFAYAVRDKDNIFIPNTDFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCYMDMFARAGWYELLDFDCVINADIDGYVLRG", "sequence_length": 153, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "06a174478495e743bda32e2b92a4027225029823e982b3bdd34a52f75c556499", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O26950.json", "taxon_id": "187420", "uniprot_accession": "O26950", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2124-pf09897.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09897", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2124-pf09897.yaml" } ], "pfam_ids": [ "PF09897" ], "protein_name": "Uncharacterized protein MJ1183", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDIMTLKLLKEENGLSPMLREFRTLVRDSNIEKVAFVGSVGVCQPFAELFGYAIRDKECYFIPDGDLNKVKKLVIKDIGMQMEDFENLNKVDAIVLFGGLAMPKYGVEVDKIKELINKLSPKKVIGVCFMSIFQKAGWDKEIDFDYLMDGFIKVSIYCKD", "sequence_length": 161, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2259588c503f589063ec8369d64d526b6acf3ba97ff8eed54873a8cbca40aa03", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58583.json", "taxon_id": "243232", "uniprot_accession": "Q58583", "uniprot_release": "2026_03" } ], "pfam_id": "PF09897", "short_name": "DUF2124", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09898", "short_name": "DUF2125", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09899", "short_name": "DUF2126", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2127-pf09900.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2127-pf09900.yaml" } ], "pfam_ids": [ "PF09900" ], "protein_name": "Uncharacterized protein Mb0093", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKNQNRIRNRWELITCGLGGHVTYAPDDAALAARLRASTGLGEVWRCLRCGDFALGGPQGRGAPEDAPLIMRGKALRQAIIIRALGVERLVRALVLALAAWAVWEFRGARGAIQATLDRDLPVLRAAGFKVDQMTVIHALEKALAAKPSTLALITGMLAAYAVLQAVEGVGLWLLKRWGEYFAVVATSIFLPLEVHDLAKGITTTRVVTFSINVAAVVYLLISKRLFGVRGGRKAYDVERRGEQLLDLERAAMLT", "sequence_length": 256, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eaa523cd8d875f703a58bfe351f8f85ba9ac31f0f1f28e3b2c0a76e4f9e9cf16", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64684.json", "taxon_id": "233413", "uniprot_accession": "P64684", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2127-pf09900.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2127-pf09900.yaml" } ], "pfam_ids": [ "PF09900" ], "protein_name": "Uncharacterized protein MT0099", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKNQNRIRNRWELITCGLGGHVTYAPDDAALAARLRASTGLGEVWRCLRCGDFALGGPQGRGAPEDAPLIMRGKALRQAIIIRALGVERLVRALVLALAAWAVWEFRGARGAIQATLDRDLPVLRAAGFKVDQMTVIHALEKALAAKPSTLALITGMLAAYAVLQAVEGVGLWLLKRWGEYFAVVATSIFLPLEVHDLAKGITTTRVVTFSINVAAVVYLLISKRLFGVRGGRKAYDVERRGEQLLDLERAAMLT", "sequence_length": 256, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eaa523cd8d875f703a58bfe351f8f85ba9ac31f0f1f28e3b2c0a76e4f9e9cf16", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM70.json", "taxon_id": "83331", "uniprot_accession": "P9WM70", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2127-pf09900.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2127-pf09900.yaml" } ], "pfam_ids": [ "PF09900" ], "protein_name": "Uncharacterized protein Rv0090", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKNQNRIRNRWELITCGLGGHVTYAPDDAALAARLRASTGLGEVWRCLRCGDFALGGPQGRGAPEDAPLIMRGKALRQAIIIRALGVERLVRALVLALAAWAVWEFRGARGAIQATLDRDLPVLRAAGFKVDQMTVIHALEKALAAKPSTLALITGMLAAYAVLQAVEGVGLWLLKRWGEYFAVVATSIFLPLEVHDLAKGITTTRVVTFSINVAAVVYLLISKRLFGVRGGRKAYDVERRGEQLLDLERAAMLT", "sequence_length": 256, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eaa523cd8d875f703a58bfe351f8f85ba9ac31f0f1f28e3b2c0a76e4f9e9cf16", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM71.json", "taxon_id": "83332", "uniprot_accession": "P9WM71", "uniprot_release": "2026_03" } ], "pfam_id": "PF09900", "short_name": "DUF2127", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain JH9)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2129-pf09902.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09902", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2129-pf09902.yaml" } ], "pfam_ids": [ "PF09902" ], "protein_name": "UPF0298 protein SaurJH9_1181", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLIPRTSIVVYLKHMKHERQIRKYGHIVHSNRDRKFVIMYVNEQDVDQIVHKLMQLKYVRHIDGSPYKYLKKTYEKEKHEIYN", "sequence_length": 84, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7113b406c7ab78eb70376466232d404b084756686434021abe0d6ad873fafd78", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5IS08.json", "taxon_id": "359786", "uniprot_accession": "A5IS08", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain JH1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2129-pf09902.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09902", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2129-pf09902.yaml" } ], "pfam_ids": [ "PF09902" ], "protein_name": "UPF0298 protein SaurJH1_1203", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLIPRTSIVVYLKHMKHERQIRKYGHIVHSNRDRKFVIMYVNEQDVDQIVHKLMQLKYVRHIDGSPYKYLKKTYEKEKHEIYN", "sequence_length": 84, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7113b406c7ab78eb70376466232d404b084756686434021abe0d6ad873fafd78", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6U0T9.json", "taxon_id": "359787", "uniprot_accession": "A6U0T9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf002777.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF002777", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf002777.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2129-pf09902.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09902", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2129-pf09902.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O34658", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09902" ], "protein_name": "UPF0298 protein YlbG", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d91d801600b0d4c28e890a4ca8ca643feeb9a4f829ed5f59dda1c4b363ebe13a", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MENRRQGMVVYLHSLKQSKMLRKFGNVHYVSKRLKYVVLYCDMDQIEKTMDKIASYSFVKKVEPSYKPFLKLEFESKLDKAKEYDYKIGI", "sequence_length": 90, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d91d801600b0d4c28e890a4ca8ca643feeb9a4f829ed5f59dda1c4b363ebe13a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34658.json", "taxon_id": "224308", "uniprot_accession": "O34658", "uniprot_release": "2026_03" } ], "pfam_id": "PF09902", "short_name": "DUF2129", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2130-pf09903.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09903", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2130-pf09903.yaml" } ], "pfam_ids": [ "PF09903" ], "protein_name": "Uncharacterized protein MG148", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKYVKVQIINKSTIELLEDAKKGEKINLDLINQVDQTNILNTITTNQKLAWEKELSAQFINQQNELIKNFEIEIIKLKTMLNDKEQALLLKTKLELQNQFQKQIENYINEINKLKLTNKELEITNQKQLESSLKLQRNEFEEKINQQNLTIEKLKIQQARSSIWAVAKKGNELEKWCENQYESYADSFENCQFTRYKTEINLLDENDFPNEKADYIFSFFGEKTNKIPFLSICCEMKSEFNDSKHKSKNKDHISKLVRDAKRANCKYAFLISELELETENDIQVRLMPTLESGVEVYLVRPMFFILMLKLFYKLAKKLFALNRFQSVELIDKNKLNEQFKQLKDNFLTKTFLEIEKVCKSNLVDIETLEKAVVKLRVRNERVLDQLLNKWTKKIDSFDLQLTKKITNNY", "sequence_length": 409, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b59198a32af6e1800c7e606ecc0e5783286e0b7587751dc59bf0167f2b7e2f32", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47394.json", "taxon_id": "243273", "uniprot_accession": "P47394", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2130-pf09903.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09903", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2130-pf09903.yaml" } ], "pfam_ids": [ "PF09903" ], "protein_name": "Uncharacterized protein MG148 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDVKYLQVEIVDKNTIRLQEDGKKGQQIRLDQIIKVDQSNILNTLEQAQREAYEREAQSRYQTKLAKELSEKDNTFLKQKAAWNQAHNTQIQQLYQQITNLENQVNNIKRETESKKDNEYQQQIVKLETQLQSIKKETESQKDLEYERKANKTKEENQQELERQRQYFLEQLEQAQKDIEELKTREERFSKWAIAKKGKELEKWCWEAYKNYEELFQNCVFAPYSELVKGAKKSIGVEDDESNINEKADFIFQVFNPNNDKEPFFSICCEMKTEFTESKSRTKNEDHVKKLIADAKRAKCQYGFLVSELELNTENDVQVQRMHTSNSEVEVYLVRPMFFIVMLRLFYFLAKKMFAQVDVNSEYLDKEALNASFSDLKKSLLEKTFTDLNKVFQNNIDELEKIEGLVTKLKAANEKALNSRLNNWEEKIRKFEFKLNKDIVKKLE", "sequence_length": 445, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "49f134fbd388b670f16f904507af01a2c8393d3b9b418766c2d7f1dd1c68898c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75584.json", "taxon_id": "272634", "uniprot_accession": "P75584", "uniprot_release": "2026_03" } ], "pfam_id": "PF09903", "short_name": "DUF2130", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09904", "short_name": "HTH_43", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09905", "short_name": "VF530", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/uncharacterized-protein-yfap-c-terminal-domain-ipr019220.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019220", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/uncharacterized-protein-yfap-c-terminal-domain-ipr019220.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/yfap-c-pf09906.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09906", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/yfap-c-pf09906.yaml" } ], "pfam_ids": [ "PF09906", "PF30407" ], "protein_name": "Uncharacterized protein YfaP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW", "sequence_length": 258, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9084097961e31478bd177fb14cae26e89f7b534f2a2a71109809bb8be46dfb57", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76462.json", "taxon_id": "83333", "uniprot_accession": "P76462", "uniprot_release": "2026_03" } ], "pfam_id": "PF09906", "short_name": "YfaP_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/toxin-antitoxin-complex-go0110001.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0110001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/toxin-antitoxin-complex-go0110001.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/higb-toxin-pf09907.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09907", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/higb-toxin-pf09907.yaml" } ], "pfam_ids": [ "PF09907" ], "protein_name": "mRNA interferase toxin HigB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKCYIREVMTHKEYDFFTAVHRTKGKK", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2a9800a3837c020ac74e044d5dd2dbe047681398acfdd8e7b4bc6e7c35155700", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64578.json", "taxon_id": "83333", "uniprot_accession": "P64578", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/higb-toxin-pf09907.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09907", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/higb-toxin-pf09907.yaml" } ], "pfam_ids": [ "PF09907" ], "protein_name": "mRNA interferase HigB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKCYIREVMTHKEYDFFTAVHRTKGKK", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2a9800a3837c020ac74e044d5dd2dbe047681398acfdd8e7b4bc6e7c35155700", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64580.json", "taxon_id": "623", "uniprot_accession": "P64580", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/higb-toxin-pf09907.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09907", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/higb-toxin-pf09907.yaml" } ], "pfam_ids": [ "PF09907" ], "protein_name": "mRNA interferase HigB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHIISKAPFEECARKYPNDALALHSLYRVIKETDFSTPEEMRTAFPNLDNFKYRNKWYVLDVGGNNLRVIAYINFVNKRFFVKHITNHAEYDKLTRYYRENKE", "sequence_length": 103, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9889cfd6a4f28f8160aa482b55fd51685edece41dba402529ca147c59c46a300", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8FEM8.json", "taxon_id": "199310", "uniprot_accession": "Q8FEM8", "uniprot_release": "2026_03" } ], "pfam_id": "PF09907", "short_name": "HigB_toxin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008500.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008500", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008500.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2138-pf09909.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09909", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2138-pf09909.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P17994", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09909" ], "protein_name": "Uncharacterized protein YfaA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "13c3096487009075bbb5c344297461504d15c6efabee0c77cf5499c132553ad9", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL", "sequence_length": 562, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "13c3096487009075bbb5c344297461504d15c6efabee0c77cf5499c132553ad9", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P17994.json", "taxon_id": "83333", "uniprot_accession": "P17994", "uniprot_release": "2026_03" } ], "pfam_id": "PF09909", "short_name": "DUF2138", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { 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[] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09919", "short_name": "DUF2149", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09920", "short_name": "DUF2150", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09921", "short_name": "DUF2153", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"66a5257770d395d7eba1534412c8c81342f2ce09538d7476ea29578e91d20b4c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32199.json", "taxon_id": "224308", "uniprot_accession": "O32199", "uniprot_release": "2026_03" } ], "pfam_id": "PF09922", "short_name": "LiaF-like_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2155-pf09923.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09923", "section": "canonical_examples", "url": 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"commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2158-pf09926.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2158-pf09926.yaml" } ], "pfam_ids": [ "PF09926" ], "protein_name": "Uncharacterized protein YodC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFHETELVPGEGSRSAEEV", "sequence_length": 60, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d6e4beb6f16e32c4204889960c25cb774922c6ae518ff022faed729c19d0600b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64518.json", "taxon_id": "83334", "uniprot_accession": "P64518", "uniprot_release": "2026_03" } ], "pfam_id": "PF09926", "short_name": "DUF2158", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09928", "short_name": "DUF2160", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09929", "short_name": "DUF2161", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09930", "short_name": "DUF2162", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09931", "short_name": "Phage_phiJL001_Gp84_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], 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"organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2170-pf09938.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2170-pf09938.yaml" } ], "pfam_ids": [ "PF09938" ], "protein_name": "Uncharacterized protein YjfI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTWNPLALATALQTVPEQNIDVTNSENALIIKMNDYGDLQINILFTSRQMIIETFICPVSSISNPDEFNTFLLRNQKMMPLSSVGISSVQQEEYYIVFGALSLKSSLEDILLEITSLVDNALDLAEITEEYSH", "sequence_length": 133, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "58d709cf047f8da06c6dac453a3c046b8e6ea09475dbfaf46b790197d3cecbbb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AF76.json", "taxon_id": "83333", "uniprot_accession": "P0AF76", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2170-pf09938.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2170-pf09938.yaml" } ], "pfam_ids": [ "PF09938" ], "protein_name": "Uncharacterized protein YjfI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTWNPLALATALQTVPEQNIDVTNSENALIIKMNDYGDLQINILFTSRQMIIETFICPVSSISNPDEFNTFLLRNQKMMPLSSVGISSVQQEEYYIVFGALSLKSSLEDILLEITSLVDNALDLAEITEEYSH", "sequence_length": 133, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "58d709cf047f8da06c6dac453a3c046b8e6ea09475dbfaf46b790197d3cecbbb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AF77.json", "taxon_id": "83334", "uniprot_accession": "P0AF77", "uniprot_release": "2026_03" } ], "pfam_id": "PF09938", "short_name": "DUF2170", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09939", "short_name": "DUF2171", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2172-pf09940.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2172-pf09940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4910-pf16254.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4910-pf16254.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-47-pf16221.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16221", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-47-pf16221.yaml" } ], "pfam_ids": [ "PF09940", "PF16221", "PF16254" ], "protein_name": "Putative polysaccharide biosynthesis protein with aminopeptidase-like domain", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEINKYIQNSSETGGEIYNLIEELFPICRSITGNGVRKTMDIIRKHIPLEIHEVKSGTKVFDWTVPKEWNIKDAYVRNSKGEKVIDFKENNLHVMSYSVPVHKTMTLDELKPYLHTIPGNKDRIPYLTSYYKENWGFSLTQNKFDELCDDDYEVVIDSSLEDGSLTYGEYYIRGELEEEILLTTYTCHPSMCNDNLSGVALITFIAKALSKLKTKYSYRFLFAPETIGSITWLSRNEDKLKNIKMGLVATCVGDAGIKNYKRTKFGDAEIDKIVEKVLMHCGSEYYVADFFPWGSDERQFSSPGINLPVGSLMRSCYGFDGYHTSADNLCYMNKDGLADSYKTYLEVIYTIENNRTYLNLNPKCEPQLGKRGIYRMIGGGSDYPFDEFAMFWVLNMSDGKNSLLDIAYKSGMEFRRIKYAADALYRVELLKLV", "sequence_length": 434, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1ca5c785e695c8b557618f2496661007c03bca971086b400747aa02c1cb8c867", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q97H19.json", "taxon_id": "272562", "uniprot_accession": "Q97H19", "uniprot_release": "2026_03" } ], "pfam_id": "PF09940", "short_name": "DUF2172", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09941", "short_name": "DUF2173", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09943", "short_name": "DUF2175", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09945", "short_name": "DUF2177", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2178-pf09946.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09946", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2178-pf09946.yaml" } ], "pfam_ids": [ "PF09946" ], "protein_name": "Uncharacterized protein AF_1792", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLCISNIMLEKPNKGGIMRYGKIGVATAMAVGAAVGYAVESGKWFITVIAVLAGVALLSLVKRRVDEVVEDERTVRVGERASRRTVEIFSIGAALSGAVMLALDLHTEAALALEFAVCCVLVLYLIFYGYYSFRALD", "sequence_length": 137, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8a6147a42964e410bc9497922ef264be054a7534735948002c77124c159219dd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O28482.json", "taxon_id": "224325", "uniprot_accession": "O28482", "uniprot_release": "2026_03" } ], "pfam_id": "PF09946", "short_name": "DUF2178", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09947", "short_name": "DUF2180", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09948", "short_name": "PpoB2", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/phosphatidate-phosphatase-app1-catalytic-domain-ipr019236.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019236", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/phosphatidate-phosphatase-app1-catalytic-domain-ipr019236.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/app1-cat-pf09949.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09949", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/app1-cat-pf09949.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P53933", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09949" ], "protein_name": "Phosphatidate phosphatase APP1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "00f7983278c23bce02ff7445b90419cd07e0ca8d3b78ab51e0c296e934f7fb41", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNSQGYDESSSSTAATSGPTSGDPRMGKKQRFMNLIRTTKDVYIPNLTSSISQKTMDGIRSTTNSFEGYNDLPMELPHNTTITYFPTYTTTNLVDPDGLSAPRKDFETTVRCAVSYPGNPTSRRNRWLLSLCKQYLRTGTAEADVAPVVPPHLEEDSGDLNDSQSSIESSLSSKSENRYSHMGIQEEDVLNERIQGFLSKKVPNTPVVVDLLPKDKLRGDTASFFGTTDSYGNLLIKAETDFLPSKINITLDTPIEGHADPISETFPANYVSPYGIGLISDIDDTIKHTGVTGDRRSMFRNVFIHDVQSWVIDGVPLWYKTLHDVADVDFFYVSNSPIQTFTLLKQYICANFPPGPIFLKQYSGNFFSTIMTSSANRKIQPIANILKDFPKKKFILVGDSGEHDLEAYTTTALQFPNQILAIYIRCCSNSMSDVPSHDEEVMNEVNNIIELQQRPMQMTKSTVRTRRRPPPPPIPSTQKPSLTEEQTESIRMSRRNKDENNAKRVAPPPLPNRQLPNLDANTYYVPSSQNDYGMYGAFMDKKADEWKRRVMDSIQKLSNQDTTLMFFSDPALSLEDSIRRIREKYSN", "sequence_length": 587, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "00f7983278c23bce02ff7445b90419cd07e0ca8d3b78ab51e0c296e934f7fb41", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53933.json", "taxon_id": "559292", "uniprot_accession": "P53933", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/app1-cat-pf09949.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09949", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/app1-cat-pf09949.yaml" } ], "pfam_ids": [ "PF09949" ], "protein_name": "Uncharacterized protein C29B5.04c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFRSFGRLFRGSEESPTINDLTSITIYPQCFISTGKEYGSEPKHISVHVRGWVYENPDLNNLGRKDRLMLNLLRRYVGLPPKSKETGTYPEKDDENTNLQVVVDTKAQLNVNVNDGKPNDIELSSTSKTENDPPLSLHTTPDDLQGNGVNVPNPSLSASRSWYQSGYGISGFFNRIMTPSVNSQYISTIGLAKCEEYFEERSLASLQRGLKDEFVLVKIYATDKNFEQKVVAEFNVATNVEGYFIIDEVIPFYTTKNNKFSVEAVLLQSTSEDKVIKAYMSEVPVLDRNGISIISDIDDTVKNTRVIEGPRKVGETTLLAPLNTQTIEGVSDWFRVMTNLNATVHFVSNSPWQLWPTLSKFFTNDNMPYISSIYLRHFNGVLQNIIEPAAARKRSSLLTAIRSLGDRKIVLIGDNGEQDLQIYAEMAACFPERILGIFIRDVMSDFCGVLKKQTTKSNSLPEVVQTKPFATSTPDTPLKEFTTTLKDVDNEQASEFYQLEKEPDTVPSTFILHRYYTYRIFVEDRANKTRKPVVQVEHAASKLENVHILCDYCKHKCSNIMEQDWFVQLARARGVIPLHIPIVIWFNGEEPISFTEDLLKSAFAS", "sequence_length": 605, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79bc3f76bfd3f1ce01744e1355c7fb5dcadb8c4e615cc8706b69264884378e88", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HGP1.json", "taxon_id": "284812", "uniprot_accession": "Q9HGP1", "uniprot_release": "2026_03" } ], "pfam_id": "PF09949", "short_name": "APP1_cat", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09950", "short_name": "Major_capside", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09951", "short_name": "Imm33", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09952", "short_name": "AbiEi_2", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": 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"status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2197-pf09963.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09963", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2197-pf09963.yaml" } ], "pfam_ids": [ "PF09963" ], "protein_name": "Uncharacterized protein YlaI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"short_name": "DUF2199", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09966", "short_name": "DUF2200", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2201-n-pf13203.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13203", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2201-n-pf13203.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2201-pf09967.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09967", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2201-pf09967.yaml" } ], "pfam_ids": [ "PF09967", "PF13203" ], "protein_name": "Uncharacterized protein TM_0929", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019243", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2202-ipr019243.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2202-pf09968.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09968", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2202-pf09968.yaml" } ], "pfam_ids": [ "PF09968" ], "protein_name": "Uncharacterized protein MJ0754", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLEYISSLPKQPISEEEKEGLIEMREEEKLARDVYLTLYNKWKLQIFKNIAESEQTHMDAVKYLLEKYNIPDPVKNDSIGVFSNPKFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSNYTPQYISKEEYEEIISSSTERGMNR", "sequence_length": 185, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "88ab05cb394d9b0b0398c34078cdee8101074c9d895fc7bc46984b37237fd939", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58164.json", "taxon_id": "243232", "uniprot_accession": "Q58164", "uniprot_release": "2026_03" } ], "pfam_id": "PF09968", "short_name": "DUF2202", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09969", "short_name": "DUF2203", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09970", "short_name": "DUF2204", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09971", "short_name": "DUF2206", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2207-ipr018702.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2207-ipr018702.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/predicted-membrane-protein-yciq-like-c-terminal-domain-ipr048389.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048389", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/predicted-membrane-protein-yciq-like-c-terminal-domain-ipr048389.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2207-pf09972.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09972", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2207-pf09972.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2207-c-pf20990.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20990", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2207-c-pf20990.yaml" } ], "pfam_ids": [ "PF09972", "PF20990" ], "protein_name": "Uncharacterized protein YciQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGKFRCILLLIAGLFVSSLSYAENTEIPSYEEGISLFDVEATLQPDGVLDIKENIHFQARNQQIKHGFYRDLPRLWMQPDGDAALLNYHIVGVTRDGIPEPWHLDWHIGLMSIVVGDKQRFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPFEIYKTRFSLQFSNIAGNPFSEIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVLYRWPHALLSNASAPQTTNIFSHLLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVDVIETDVIPPDYTPGMLRLDAKLVYDDKGFCADIVNLIVKGKIHLEDQSDKNQQILIRVNEGATRNNAVLLPAEQLLLEALFRKGDKVVLTGRRNRVLRRAFLRMQKFYLPRKKSSFYRSDTFLQWGGLAILAVILYGNLSPVGWAGMSLVGDMFIMICWIIPFLFCSLELLFARDDDKPCVNRVIITLFLPLICSGVAFYSLYINVGDVFFYWYMPAGYFTAVCLTGYLTGMGYIFLPKFTQTGQQRYAHGEAIVNYLARKEAATHSGRRRKGETRKLDYALLGWAISANLGREWALRIAPSLSSAIRAPEIARNGVLFSLQTHLSCGANTSLLGRSYSGGGAGGGAGGGGGGGW", "sequence_length": 631, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "968c00f082e5c98edce68e47aac5d2aa5dfbd6f5acfa2d0bf0060f117e14aee9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P45848.json", "taxon_id": "83333", "uniprot_accession": "P45848", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2207-ipr018702.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2207-ipr018702.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/predicted-membrane-protein-yciq-like-c-terminal-domain-ipr048389.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048389", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/predicted-membrane-protein-yciq-like-c-terminal-domain-ipr048389.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2207-pf09972.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09972", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2207-pf09972.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2207-c-pf20990.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20990", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2207-c-pf20990.yaml" } ], "pfam_ids": [ "PF09972", "PF20990" ], "protein_name": "Uncharacterized protein MJ1577", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MREEKEIIIVCLLIFIVGVVGIFLTTSFNGMKYTSIYIKDYEANLYIGKNLTLEEIYSYEVLEGRKYRMLYRDWKAPLVYNGSLNTPYVKVLNLSTSSKDMVGYVVDYKGDIFVFSDEDWIKRNIEEIVDKYYIRNEVGFYNPLYIRNPGIYTTSYKFVIYPPIETDNVFYHINLKLADEHLPYKNVKINVIDENNSILDLFVYPSTFKVYKTYFGYTIEGSSPKNDPIEVEMLLKPNSVNGFTRYVYNVEGKTISAYKKYTFVSNIVMTLKYLLMAIILLFPLIAYIIYLKFGKEKFYVVPEYLSYVPNKNRKPWIVNLIFAGDAGFFDKEGFYATLLDLHNRGYIKIMNGGKIEILKTDLENLDVYESDVMKFLMKYSKNNVFDPEYIKSLAQKYKSSKDKLKKLKDELDKIMEYPRYSSKVVNAFLETRGKKIIIALLVISILLAVFLYFIPKYSQTFNEVFYLSIVFVVQNIILALTPTSLFGRWKANYYKEKLEWDAFKNFLSNLAMIKKYSPEDISIWKDWLIYGTALGVGDKVVEAMKSLNLSELVADYVIIHSNYDSMKTSVDSVYSSTTGSGGGFGAGGGFGGGGGGAR", "sequence_length": 598, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ced5d97acaa0676aa94563a12f23d2fc690dc425f453286b939b44f6ca20aa85", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58972.json", "taxon_id": "243232", "uniprot_accession": "Q58972", "uniprot_release": "2026_03" } ], "pfam_id": "PF09972", "short_name": "DUF2207", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09973", "short_name": "DUF2208", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2209-pf09974.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09974", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2209-pf09974.yaml" } ], "pfam_ids": [ "PF09974" ], "protein_name": "Uncharacterized protein MJ0095", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIDISGRHHENDIFFRVYAGVLVEIKADRIVHVEKIDVMVKEEETQKLRDIVKEVKELIDKVGDEFDYILCERGEFFNISKDIISAILKKEVIFPKTRGELEAINIAHHVSYSVRKLLIEEKRKS", "sequence_length": 126, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2a63e4f102690ae8fc54ae6a89a671a38672e513d1a0d33ee541b2edac87b44c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57560.json", "taxon_id": "243232", "uniprot_accession": "Q57560", "uniprot_release": "2026_03" } ], "pfam_id": "PF09974", "short_name": "DUF2209", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-21-pf09976.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09976", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-21-pf09976.yaml" } ], "pfam_ids": [ "PF09976" ], "protein_name": "Ancillary SecYEG translocon subunit", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHLNKMKKVSLKTYLVLFFLIFFIFCSFWFIKPKEKKLKLEKLRYEEVIKKINAKNNQNLKSVENFITENKNIYGTLSSLFLAKKYILDKNLDKALIQLNNSLKYTKEENLQNILKIRIAKIKIQQNKNQDAIKILEEIKDNSWKNIVENMKGDIFMKNKEIKKAILAWKKSKYLEKSNASKEIINMKINEIKR", "sequence_length": 194, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e91c4d6a92f3231e026ebab1b390c92caebeba859026e648782bcd922e5fd541", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O51880.json", "taxon_id": "198804", "uniprot_accession": "O51880", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-21-pf09976.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09976", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-21-pf09976.yaml" } ], "pfam_ids": [ "PF09976" ], "protein_name": "Ancillary SecYEG translocon subunit", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYSIEEEQEINQLKDWWKENGKTIIVAFILGVGGMFGWRYWQTHQAEQIAQASAQYDTLINSVQQDEQAKKANIEQFVQANSKTAYAVFALLDEAKKATEKQDFSAAEANLNQALTQSQDEVLTSIVALRLSAVQFQLGQLDNALSTLNQVKGESFNARKAILTGDIQVAKGDKVAAKNSFEQAQQSGSQLEQQMAKMKLNNL", "sequence_length": 204, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b2e05fc3d7bf32391e1b232ca5ceaeac08d9919d72f9deb415090ac3b2f330d9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P43989.json", "taxon_id": "71421", "uniprot_accession": "P43989", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ancillary-secyeg-translocon-subunit-cell-division-coordinator-cpob-tpr-ipr018704.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018704", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ancillary-secyeg-translocon-subunit-cell-division-coordinator-cpob-tpr-ipr018704.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-21-pf09976.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09976", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-21-pf09976.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P76576", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09976" ], "protein_name": "Ancillary SecYEG translocon subunit", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "5012739d062077fa7b03e3b7b94b89419656ae4d2bd3b0e1877eaac424949e42", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEIYENENDQVEAVKRFFAENGKALAVGVILGVGALIGWRYWNSHQVDSARSASLAYQNAVTAVSEGKPDSIPAAEKFAAENKNTYGALASLELAQQFVDKNELEKAAAQLQQGLADTSDENLKAVINLRLARVQVQLKQADAALKTLDTIKGEGWAAIVADLRGEALLSKGDKQGARSAWEAGVKSDVTPALSEMMQMKINNLSI", "sequence_length": 206, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "5012739d062077fa7b03e3b7b94b89419656ae4d2bd3b0e1877eaac424949e42", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76576.json", "taxon_id": "83333", "uniprot_accession": "P76576", "uniprot_release": "2026_03" } ], "pfam_id": "PF09976", "short_name": "TPR_21", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09977", "short_name": "Tad_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09979", "short_name": "Pa193_gp24", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09980", "short_name": "DUF2214", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09981", "short_name": "DUF2218", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09982", "short_name": "LpxR", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus cereus (strain Q1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/jetd-c-pf09983.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09983", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/jetd-c-pf09983.yaml" } ], "pfam_ids": [ "PF09983" ], "protein_name": "Wadjet protein JetD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDYKSKILSVLLNKYENSKTAHTGERSAQRPQFSFRQKHELSKAYNDEMDYTNRLEINTALKDLIRKKIIEVKWEKWEENRIAEKVYLQYDFIPQAYREAGIEPKIEKMNRILKVLEPLAVHSWEWVRQWYKEVQQSFQNNKTARINLNDVKGYELLVKALSRLEGLEDSIPKRTFSQLVFGDTKLFETTIQNRLLIIYKRYGDIEYESDKEYLESIGILENIQPVYIKGNVDIRVRGEKIALGSFPGGFGLMDETIKELEIQYVHDESIMLIENMTTYYEQIKKNNNILFIYTGGFPKKNVQQLLKKLNIYLENHPVPVYHYGDLDYGGIQIFEYIKRSFFSGLEPYMMDVATYRQFVKYGMEFGEGYEEKLLKMLENEQYSLWHELIKEMLKEKKRVEQEVIVRNVI", "sequence_length": 409, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a0f938a9556b67b53578e0462b30e4d6aebdcdd8ae727772cbf803d017f1068f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B9IS86.json", "taxon_id": "361100", "uniprot_accession": "B9IS86", "uniprot_release": "2026_03" } ], "pfam_id": "PF09983", "short_name": "JetD_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/scache-4-pf09984.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09984", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/scache-4-pf09984.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AEC5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00072", "PF00512", "PF00672", "PF01627", "PF02518", "PF09984" ], "protein_name": "Signal transduction histidine-protein kinase BarA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "17c7d59fb9f3326c7304dd5cd8decfb10760349910cc745b93d4fe11f64ff01d", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG", "sequence_length": 918, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "17c7d59fb9f3326c7304dd5cd8decfb10760349910cc745b93d4fe11f64ff01d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AEC5.json", "taxon_id": "83333", "uniprot_accession": "P0AEC5", "uniprot_release": "2026_03" } ], "pfam_id": "PF09984", "short_name": "sCache_4", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09985", "short_name": "Glucodextran_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf2225-pf09986.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09986", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf2225-pf09986.yaml" } ], "pfam_ids": [ "PF09986" ], "protein_name": "Uncharacterized protein BB_0011", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKISYFTKEKIECPVCSFKFQKEEFLTGSSRLIAGELKIDLKREYIKNDKYGNIYPRIYSITVCPKCYFAAFPSEFNSIPKNKKEILQNKKYERKKINTIFDNMLNFSKPRTLKEGAASYILAMLSYEHLEKNYNPTLNQAKSAIRAAWTFEDLEKEEPNKNYNYLQKIFYHKAAYLYKLVIEKDKDNSEPVSASTMFGPDTDKNYGYDSVLYLSGLLEYFYGNKDNKEYRYKQLNDIKTTLSKIAGMGKFSKEKPSILLDKIKEVYFKISKEMKNLK", "sequence_length": 279, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70e01146cb068ca76e8f673e555e9a25991af3b92d853470d4ce8fca8b9ffda3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O51044.json", "taxon_id": "224326", "uniprot_accession": "O51044", "uniprot_release": "2026_03" } ], "pfam_id": "PF09986", "short_name": "DUF2225", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2226-pf09987.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09987", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2226-pf09987.yaml" } ], "pfam_ids": [ "PF09987" ], "protein_name": "Uncharacterized protein AF_1501", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMIPKGEVVELGKRGNFRDILKELSATGFTGYLEVSYKKGELSRAKVLFSNGKIVAAGIKRVISKSEIVGEKALEELLGLESCVVDVYALDEGKVAKALEWNRNAVVEHLPETEVEVEGGLTEEIITTPDEREAILKKYGIKMPSEEEIDQIIMNALDGSYDVIAATTSAPGDFESLKNSLISTAELYLGKMSKKVVDVINDCKSAEELVERFDEIRSAAKSLVIFIPRKKIDEMLSEMERLIGESI", "sequence_length": 247, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8bc25545e908ba1e5d0ad83989bd6b124b9ff69bbda0d87cb04d4f0173add3d2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O28771.json", "taxon_id": "224325", "uniprot_accession": "O28771", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2226-ipr019249.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019249", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2226-ipr019249.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2226-pf09987.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09987", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2226-pf09987.yaml" } ], "pfam_ids": [ "PF09987" ], "protein_name": "Uncharacterized protein MJ0164", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRENMIKVVDGEYVKTLYEGNLEEIINEIDTGYILILVKEGNKLHEGYIFVEDGKIVGCYYTDSESTEVFGNKEKVIELLNYENKVIDIYKYNKDKINLMKWLYPEIFACKDTNKVSEKNEDMSEKRDIVEKYLNIKLDIPLDNLIEANTKDFEKYLEDNKYIIINAYRKKDGKFENGYIIYKGQTPIAAAYECDLGVLLGKDAYEKLEEMLKDENTVIDVYEYNEKKTHVILELYPQMKILDENENKSSEKADSLESEGSITTAEEIEEESTVSREELLKKLGIKEPDENWIETILEDVFRPSDEELEELKEKIESEIVNKVKRMEGVSDVLVNLKIKWENGRYYIFGDVNVKRKRILGIIKKDIDPSIVKFEIDNTIKKYVSKYTSRININIE", "sequence_length": 395, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "295cb18bf648e6e18d07f7abdc4622a7b51a4bc498cb02057dc787194172e23e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57628.json", "taxon_id": "243232", "uniprot_accession": "Q57628", "uniprot_release": "2026_03" } ], "pfam_id": "PF09987", "short_name": "DUF2226", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aquifex aeolicus (strain VF5)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2227-pf09988.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09988", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2227-pf09988.yaml" } ], "pfam_ids": [ "PF09988" ], "protein_name": "Uncharacterized protein aq_2157", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLVPQDYRIPFGIGYLLGTFFLSPDLDLHFSKPSQRWKFLKFLWFPFWVFSRHRGITHVPFLGTLVKLFYLIFIFFFLYFAVLGVLSILGFAPKELLSFDPFAFINEFLKSEKGFFFILGLIVADLLHIVLDIVSSFIKRF", "sequence_length": 141, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "10912340af71599b1bfe8423b0084befa5eee6b92b5193f801ddaf1e9b4885f1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O67910.json", "taxon_id": "224324", "uniprot_accession": "O67910", "uniprot_release": "2026_03" } ], "pfam_id": "PF09988", "short_name": "DUF2227", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09989", "short_name": "DUF2229", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09990", "short_name": "DUF2231", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2232-pf09991.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09991", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2232-pf09991.yaml" } ], "pfam_ids": [ "PF09991" ], "protein_name": "Uncharacterized protein YybS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKQTRALMEGAILISLFAIITLLVVYVPVIGTILLFALPLPMILYTIRHGLKLGIWMGAVSLPVVFIVGSFNGLIVAFMSACAGIAMGHFFKRKEPGHAIISGALIYMLSIVFYFVISIQFLGINIIDEAMTQYRQSLDIVETVAKQSGNAGQFEKQLKLMEEQLGIVQYLFPTAIVMVGVIFSFLSYLIAKPLLRRFSPDIPNLKPFRELKFPQSVVVLYLIIVMLSFLPLEKGQMLYSIALNGEFILGFLIFIQGLSFIFFYCHKKQYPKAAAVIAVILGFVHPVFMAAIRILGVLDMGFHIRNKVK", "sequence_length": 309, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3cadfdd05073da8e3f6474d8215c8f9baf0ac40ee032d5329a8461529f262b9a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37485.json", "taxon_id": "224308", "uniprot_accession": "P37485", "uniprot_release": "2026_03" } ], "pfam_id": "PF09991", "short_name": "DUF2232", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/phosphodiester-glycosidase-ipr018711.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018711", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/phosphodiester-glycosidase-ipr018711.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rhamnogalacturonase-a-b-epimerase-like-pectate-lyase-domain-ipr024535.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024535", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rhamnogalacturonase-a-b-epimerase-like-pectate-lyase-domain-ipr024535.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nagpa-pf09992.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09992", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nagpa-pf09992.yaml" } ], "pfam_ids": [ "PF09992", "PF12708" ], "protein_name": "SPbeta prophage-derived uncharacterized protein YomE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGFYRYDQNLDKYVPMPVELLASEGEEYTAPKITQKFNEVETKTTEILNKVLTDDRYFTVTSSFKQDATLGIEYYVTKVTPKTTEAKKSMVQKTFAYDFEKSIDPTSSYFGTTNRETVLSMAKRKRSVVAINASGWRSNGEVMGLQIKDGVLYKDYDAAGYTGAEACVFFDDGTMKVYGNREVDADILISKGARNSFAFGIWLVKDSKPRTAQMTTWADLNVKHPRQAIGQRSDGTLVIITVDGRSLRSSGITAYDMPSLFLSEGCINAFLLDGGGSSQTAVEGKYINNISDGIERAVVDTLTISYPDDDTDSRFFEVQEGRGLATSLNRRVEFIESKPTWNVLDLGFSPDGLIDNTAKFKKALSDLSEKGGGKLHFPKGTYLIGKQNTTSASEKIELPSNVSIVGERRSYTKLLRNPNHSLDELLRITDHNYIEGIEIDGNSSVNKSSCRLIAGGNIKSFKMKDCSLVNATDRGVSIHGIGKSITIEGMYISNIANECINVAEGEIIKLIDSEITFSGTALWVGNAANIFTKNNLAKSLKTFVRYKNSQNAICSGNIITNNIDRAIWGSVREAVFSDNVFKQCHSDYHLYFIQEDTGTNDLIVTGNSVYSDVEGTAFIRTPSDIDRRRVSGNVGNIPSLNLD", "sequence_length": 644, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea54b5b71ec11a4785ce0567a2281732a0270aa0395bdf5bff487cfc7c2a467a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31980.json", "taxon_id": "224308", "uniprot_accession": "O31980", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/phosphodiester-glycosidase-ipr018711.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018711", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/phosphodiester-glycosidase-ipr018711.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nagpa-pf09992.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09992", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nagpa-pf09992.yaml" } ], "pfam_ids": [ "PF09992" ], "protein_name": "Uncharacterized protein YigE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAHQLLIGKGMITLNLKRIFLALTLLPLFAVAADDCALSDPTLTVQAYTVNPQTERVKMYWQKANGEAWGTLHALLADINSQGQVQMAMNGGIYDESYAPLGLYIENGQQKVALNLASGEGNFFIRPGGVFYVAGDKVGIVRLDAFKTSKEIQFAVQSGPMLMENGVINPRIHPNVASSKIRNGVGINKHGNAVFLLSQQATNFYDFACYAKAKLNVEQLLYLDGTISHMYMKGGAIPWQRYPFVTMISVERKG", "sequence_length": 254, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c53c3a25cfef1d2c921a2d2e271cb3d2cf8ba207e7c168a10219cbc8abafaca9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P27840.json", "taxon_id": "83333", "uniprot_accession": "P27840", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/n-acetylglucosamine-1-phosphodiester-alpha-n-acetylglucosaminidase-activity-go0003944.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0003944", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/n-acetylglucosamine-1-phosphodiester-alpha-n-acetylglucosaminidase-activity-go0003944.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/phosphodiester-glycosidase-ipr018711.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018711", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/phosphodiester-glycosidase-ipr018711.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nagpa-pf09992.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09992", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nagpa-pf09992.yaml" } ], "pfam_ids": [ "PF09992", "PF23106" ], "protein_name": "N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAPRGPGLFLIPALLGLLGVAWCSLSFGVSRDDDLLLPYPLARRRPSRDCARVRSGSPEQESWPPPPTNPGASHHAAVRTFVSHFEGRAVAGHLTRVADPLRTFSVLEPGGAGGCAQKRRATVEDTAVPAGCRIAQNGGFFRMSTGECLGNVVSDGRLVSSSGGLQNAQFGIRRDGTIVTGYLSEEEVLDPVNPFVQLLSGVVWLIRNGNIYINESQAIECDETQETGSFSKFVNVMSARTAVGHDREGQLILFHADGQTEQRGLNLWEMAEFLRQQDVVNAINLDGGGSATFVLNGTLASYPSDHCQDNMWRCPRQVSTVVCVHEPRCQPPDCSGHGTCVDGHCECTSHFWRGEACSELDCGPSNCSQHGLCTETGCHCDAGWTGSNCSEECPLGWYGPGCQRPCQCEHQCSCDPQTGNCSISQVRQCLQPTEATPRAGELASFTRTTWLALTLTLIFLLLISTGVNVSLFLGSRAERNRHLDGDYVYHPLQEVNGEALTAEKEHMEETSNPFKD", "sequence_length": 517, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "447e7a55c58ec13903a7d3737a8490fabde013f060996dfc3adedc11d3f96837", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BJ48.json", "taxon_id": "10090", "uniprot_accession": "Q8BJ48", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/n-acetylglucosamine-1-phosphodiester-alpha-n-acetylglucosaminidase-activity-go0003944.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0003944", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/n-acetylglucosamine-1-phosphodiester-alpha-n-acetylglucosaminidase-activity-go0003944.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/secretion-of-lysosomal-enzymes-go0033299.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0033299", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/secretion-of-lysosomal-enzymes-go0033299.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/phosphodiester-glycosidase-ipr018711.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018711", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/phosphodiester-glycosidase-ipr018711.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nagpa-pf09992.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09992", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nagpa-pf09992.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/tie2-ligand-binding-domain-superfamily-2-170-300-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.170.300.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tie2-ligand-binding-domain-superfamily-2-170-300-10.yaml" } ], "pfam_ids": [ "PF09992" ], "protein_name": "N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATSTGRWLLLRLALFGFLWEASGGLDSGASRDDDLLLPYPRARARLPRDCTRVRAGNREHESWPPPPATPGAGGLAVRTFVSHFRDRAVAGHLTRAVEPLRTFSVLEPGGPGGCAARRRATVEETARAADCRVAQNGGFFRMNSGECLGNVVSDERRVSSSGGLQNAQFGIRRDGTLVTGYLSEEEVLDTENPFVQLLSGVVWLIRNGSIYINESQATECDETQETGSFSKFVNVISARTAIGHDRKGQLVLFHADGQTEQRGINLWEMAEFLLKQDVVNAINLDGGGSATFVLNGTLASYPSDHCQDNMWRCPRQVSTVVCVHEPRCQPPDCHGHGTCVDGHCQCTGHFWRGPGCDELDCGPSNCSQHGLCTETGCRCDAGWTGSNCSEECPLGWHGPGCQRPCKCEHHCPCDPKTGNCSVSRVKQCLQPPEATLRAGELSFFTRTAWLALTLALAFLLLISTAANLSLLLSRAERNRRLHGDYAYHPLQEMNGEPLAAEKEQPGGAHNPFKD", "sequence_length": 515, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9447d1b27b1aa572882c4b2cae93803c1c7c99cc7411c9104d64cde8ea5ed9d6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UK23.json", "taxon_id": "9606", "uniprot_accession": "Q9UK23", "uniprot_release": "2026_03" } ], "pfam_id": "PF09992", "short_name": "NAGPA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/t6ss-phospholipase-effector-tle1-like-catalytic-domain-ipr018712.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018712", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/t6ss-phospholipase-effector-tle1-like-catalytic-domain-ipr018712.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/t6ss-tle1-like-cat-pf09994.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09994", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/t6ss-tle1-like-cat-pf09994.yaml" } ], "pfam_ids": [ "PF09994" ], "protein_name": "Uncharacterized protein YEL023C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSFNYIHGKYKKNGTGGDRSINPSSHSSSGKNIILCFDGTRENFGPQPFTNILKLYNLLENGDSSEQICYYQPGIGSVGFDAVVDVRRRLTISHLQNLLDSMFAFSLDNHICSAYLFLMKYFEPGDRIYMFGFSRGAFIARVLAGMIERVGLLSKGLEEMVKMAWQIYEKWEYDSQPNELQYTSTLAEEFKKTFSRDYEVKIHFQGLFDSVNSVGILRDRLFPCTQRSNIVEHVRHCVSLDERRGKFKQLCFTPMPYIPKLFSLTYCNHITDQCSPVPTSNALMRDLTPENPLIKYTLKSGAHSISNPSPLIPDNPGRLLSSKSEETTELLLDLNSFLEGNSYARDTECSTRGIEAIFQLQSIQGSGTSSRMTMTPDLIEKWFPGDHSDVGGGWAPDCETEENLSNLTLRWILAEAIKFGVKFKPGAIHDFATKHTSIGSLFADTHDYLSFNSPKKCSLLGVSDNEDGAREDKSGRNERMEDCLKNIKETRLSLKDEKEKVKDAFTLKCGHANKFMRLVWWVLELLPIGIRMENKEGKWQNFHTPNLGRSRYVPEYVSLHWSVYWRIKFDRRYRPDNMPEYVRQLFQDLEGIDLKSNKVSNKYDKQDNSNGSEINGGFFDNEEGQELHMGQKASYFATTYNSRLFDSKYSQLKKKFMDWDSNSWTDIPDDLKIYLQQDESL", "sequence_length": 682, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9f1d80609d74160569eca7d237092ffe4d7d5179f3a3c67b2d339252e42869e8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P39992.json", "taxon_id": "559292", "uniprot_accession": "P39992", "uniprot_release": "2026_03" } ], "pfam_id": "PF09994", "short_name": "T6SS_Tle1-like_cat", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09995", "short_name": "MPAB_Lcp_cat", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09996", "short_name": "DUF2237", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf007369.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007369", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf007369.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2238-pf09997.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09997", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2238-pf09997.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P39270", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09997" ], "protein_name": "Inner membrane protein YjdF", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7b2c815c9448f8b91a457f5f03263c6d2b17f9fd24511f11b3923a6f0bc198f1", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTRTLKPLILNTSALTLTLILIYTGISAHDKLTWLMEVTPVIIVVQLLLATARRYPLTPLLYTLIFLHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDKLGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQGADDFLGTQGDQWDTQSDMFCALLGALTTVIFLARFHCRQLRRFGLITG", "sequence_length": 209, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7b2c815c9448f8b91a457f5f03263c6d2b17f9fd24511f11b3923a6f0bc198f1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P39270.json", "taxon_id": "83333", "uniprot_accession": "P39270", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2238-pf09997.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF09997", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2238-pf09997.yaml" } ], "pfam_ids": [ "PF09997" ], "protein_name": "Uncharacterized protein TM_0562.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLVKEREEKLNRVLVALLGIPVVFSIIRAKIVETIGYFIFWLGGFSPYVYEKITHQEIPERTKLMLSSSVFLHSVMGQFLNFYEKIFFWDKILHFYGSFVITYFFYQILTKKSRFWDEVPGAVLMAFLLGVFSGVLWEIAEFTTDKILPDYNTQKGLDDTMLDLIFDLLGCYTMAKIVYRKKTGRFFWRPRS", "sequence_length": 192, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "05c120e18a53b9237f207eccf510a39b89aa14b374e0413d75ceb3c99e3fc441", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P58008.json", "taxon_id": "243274", "uniprot_accession": "P58008", "uniprot_release": "2026_03" } ], "pfam_id": "PF09997", "short_name": "DUF2238", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09998", "short_name": "DUF2239", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF09999", "short_name": "DUF2240", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10000", "short_name": "ACT_3", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10001", "short_name": "DUF2242", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10002", "short_name": "DUF2243", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10003", "short_name": "DUF2244", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10004", "short_name": "DUF2247", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10005", "short_name": "Zn_ribbon_DZR_6", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10006", "short_name": "DUF2249", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10007", "short_name": "DUF2250", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2251-pf10008.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2251-pf10008.yaml" } ], "pfam_ids": [ "PF10008" ], "protein_name": "Uncharacterized protein HI_0931", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSHRTLYKSAVFLYLIFKGKRMLHLTLEDELFLGTPKQVGTHSTVFEHFAVMFEDDGETGYFYALDMRQNAQPIVDMLHVYNVDSTSNHHEARKLEICWDESGYVALLLINGYPHAVFDFARLVGYNSNKYPQPDLMSMWTREEITNKQAEQWLGVKTIR", "sequence_length": 161, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fdc06b19d16a44b51404106945cf40a721eabcc0c8ceabd86069a1820fd3c7b4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44078.json", "taxon_id": "71421", "uniprot_accession": "P44078", "uniprot_release": "2026_03" } ], "pfam_id": "PF10008", "short_name": "DUF2251", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10009", "short_name": "DUF2252", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2254-pf10011.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10011", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2254-pf10011.yaml" } ], "pfam_ids": [ "PF10011" ], "protein_name": "Uncharacterized protein Mb1321c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQRSLGVNGRKLAMSARSAKRERKNASTAASKCYVVPPSARGWVHAYSVTATSMLNRRKAILDYLQGAVWVLPTFGVAIGLGSGAVLSMIPVKSGTLIDKLMFQGTPGDARGVLIVVSATMITTIGIVFSLTVLSLQIASSQFSVRLLRTFLRDVPNQVVLAIFACTFAYSTGGLHTVGEHRDGGAFIPKVAVTGSLALAFVSIAALIYFLHHLMHSIQIDTIMDKVRLRTLGLVDQLYPESDTADRQVETPPSPPADAVPLLAPHSGYLQTVDVDDIAELAAASRYTALLVTFVGDYVTAGGLLGWCWRRGTAPGAPGSDFPQRCLRHVHIGFERTLQQDIRFGLRQMVDIALRALSPALNDPYTAIQVVHHLSAVESVLASRALPDDVRRDRAGELLFWLPYPSFATYLHVGCAQIRRYGSREPLVLTALLQLLSAVAQNCVDPSRRVAVQTQIALVVRAAQREFADESDRAMVLGAAARATEVVERPGTLAPPPSTFGQVAAAQAAASTIRSADRDG", "sequence_length": 521, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4161e1ed343ae2b5b94be5f555d875b952ccfaf6b22167a76e3098db1c819d25", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A5E4.json", "taxon_id": "233413", "uniprot_accession": "P0A5E4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2254-pf10011.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10011", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2254-pf10011.yaml" } ], "pfam_ids": [ "PF10011" ], "protein_name": "Uncharacterized protein MT1328", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQRSLGVNGRKLAMSARSAKRERKNASTAASKCYVVPPSARGWVHAYSVTATSMLNRRKAILDYLQGAVWVLPTFGVAIGLGSGAVLSMIPVKSGTLIDKLMFQGTPGDARGVLIVVSATMITTIGIVFSLTVLSLQIASSQFSVRLLRTFLRDVPNQVVLAIFACTFAYSTGGLHTVGEHRDGGAFIPKVAVTGSLALAFVSIAALIYFLHHLMHSIQIDTIMDKVRLRTLGLVDQLYPESDTADRQVETPPSPPADAVPLLAPHSGYLQTVDVDDIAEFAAASRYTALLVTFVGDYVTAGGLLGWCWRRGTAPGAPGSDFPQRCLRHVHIGFERTLQQDIRFGLRQMVDIALRALSPALNDPYTAIQVVHHLSAVESVLASRALPDDVRRDRAGELLFWLPYPSFATYLHVGCAQIRRYGSREPLVLTALLQLLSAVAQNCVDPSRRVAVQTQIALVVRAAQREFADESDRAMVLGAAARATEVVERPGTLAPPPSTFGQVAAAQAAASTIRSADRDG", "sequence_length": 521, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "74823ebde0c455dec5e972a75335958b455e6cec1470178f54412229450e6462", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM34.json", "taxon_id": "83331", "uniprot_accession": "P9WM34", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2254-pf10011.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10011", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2254-pf10011.yaml" } ], "pfam_ids": [ "PF10011" ], "protein_name": "Uncharacterized protein Rv1290c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQRSLGVNGRKLAMSARSAKRERKNASTAASKCYVVPPSARGWVHAYSVTATSMLNRRKAILDYLQGAVWVLPTFGVAIGLGSGAVLSMIPVKSGTLIDKLMFQGTPGDARGVLIVVSATMITTIGIVFSLTVLSLQIASSQFSVRLLRTFLRDVPNQVVLAIFACTFAYSTGGLHTVGEHRDGGAFIPKVAVTGSLALAFVSIAALIYFLHHLMHSIQIDTIMDKVRLRTLGLVDQLYPESDTADRQVETPPSPPADAVPLLAPHSGYLQTVDVDDIAELAAASRYTALLVTFVGDYVTAGGLLGWCWRRGTAPGAPGSDFPQRCLRHVHIGFERTLQQDIRFGLRQMVDIALRALSPALNDPYTAIQVVHHLSAVESVLASRALPDDVRRDRAGELLFWLPYPSFATYLHVGCAQIRRYGSREPLVLTALLQLLSAVAQNCVDPSRRVAVQTQIALVVRAAQREFADESDRAMVLGAAARATEVVERPGTLAPPPSTFGQVAAAQAAASTIRSADRDG", "sequence_length": 521, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4161e1ed343ae2b5b94be5f555d875b952ccfaf6b22167a76e3098db1c819d25", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM35.json", "taxon_id": "83332", "uniprot_accession": "P9WM35", "uniprot_release": "2026_03" } ], "pfam_id": "PF10011", "short_name": "DUF2254", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10012", "short_name": "DUF2255", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10013", "short_name": "DUF2256", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pantoea ananatis (strain AJ13355)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/2og-fe-oxy-2-pf10014.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10014", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/2og-fe-oxy-2-pf10014.yaml" } ], "pfam_ids": [ "PF10014" ], "protein_name": "3(1)-hydroxy-L-isoleucine 4-dioxygenase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMEYATHLSRQGYAFIPGDYYRSTEAMQFSNKEDFLDELEELKKGYENLLLDPYSPGNRWRGYAQCKKNEKGELTFGKFNPYKQTKAFNPDTGDIIRDYPLLPEAITRNRLFQTLLHDDLSLVDAYESIGPVDSLTIGIHFFRYQATENEPAYSSPVWLHKDDEDVVFVHMINASPNMLGGDSLIASHPRSIDRVLRLEQLFDTLVVNHDKLHAVTPVGARENSGPAQRDIILITFQKNEEKTACPV", "sequence_length": 247, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c722c73f569b6540595cc180e0c91de57dfb7c079aaa4ef42b5b3fd0164e5495", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0H3L116.json", "taxon_id": "932677", "uniprot_accession": "A0A0H3L116", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/2og-fe-oxy-2-pf10014.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10014", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/2og-fe-oxy-2-pf10014.yaml" } ], "pfam_ids": [ "PF01053", "PF10014" ], "protein_name": "Bifunctional enzyme flvA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTPKPLTLVNGYHDLDNTQISSPLSSMHDVWRTILSRFKQNTNAIKTRFDKYRALCKELGLQRDEWSESIFLDDLEKLLKLTAKFEMALMPSNGVDTHVNGVITKINGFNNGFDTHINGFDTRINGFHTHTNGFDRGLELWQIEERYRALAQLQSTLGSFFERACPGYDQSKIPWFFDPSYYQCQGVNYDRFASPDVRDREQQLLETLQLGSNQNPKLLLMSSGMASFTVIQQYVVQQLNYGDTVVVSPYIYFESFQPMRSQKSLTVVNAKGFDPESIIEAAERNNARAVFLDPMCNTVGLDTIDIRRFAHLVANRGGWADRLVIVDGTLVSGGMQLYDWFDGPHCPKVLYYESAHKYIQLGLDLIMCGYVVMPEDLVPAIQLIRQITGTVLYSRNASLLPPIDKTIFNFRMSRLTTNAEKLHRLLDAESRNMAEVTFPHHWRDYRWRHGGNVVTVRFHGEGLNKRSNLERCCDDILRAAEEEGVQMVKGASLGFSTTRIFVADAFFENTDPFLRISVGVQSEDIETVARAVLSGIKRYCMSAVPVNLDVGQRLYDAKFYIAMASMLEVRARYAKDRVVFMEGEWLVPILKALGAREEDFDALQQVSHHLGKDPTVDYRTIRNGLFYFNFENKAIQRFQKQRFTLTVQENYKRHDSGLPRDFPEVRGDLQYNTVLQALMVAKAFIMNKVDVEPRAHLDYSSPNFLCNVFNIRTFTEKNILGEPTLEGVHADGADHTMTTFLGCTNMRSDSGITFIHDQKEITGIPATEAQPSLIKHRFQHRHFLDSLLFADNEAKHSLTSVFQEDVSKRATRDMLLFLTRKPKLAGHSSGSVDAMEPHKTLPMNVPLWL", "sequence_length": 849, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fd5d6d06bc45c6c2bfa05410da6fda5cc7a1a761e781b41491ca11fff32811d6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/B8NHD6.json", "taxon_id": "332952", "uniprot_accession": "B8NHD6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus thuringiensis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/2og-fe-oxy-2-pf10014.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10014", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/2og-fe-oxy-2-pf10014.yaml" } ], "pfam_ids": [ "PF10014" ], "protein_name": "L-isoleucine-4-hydroxylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKMSGFSIEEKVHEFESKGFLEISNEIFLQEEENHSLLTQAQLDYYNLEDDAYGECRARSYSRYIKYVDSPDYILDNSNDYFQSKEYNYDDGGKVRQFNSINDSFLCNPLIQNIVRFDTEFAFKTNIIDKSKDLIIGLHQVRYKATKERPSFSSPIWLHKDDEPVVFLHLMNLSNTAIGGDNLIANSPREINQFISLKEPLETLVFGQKVFHAVTPLGTECSTEAFRDILLVTFSYKETK", "sequence_length": 240, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2629330d7fe66298c7dc8fea0f99b671580b1ea6cfef8ca2242f1a8189917628", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E2GIN1.json", "taxon_id": "1428", "uniprot_accession": "E2GIN1", "uniprot_release": "2026_03" } ], "pfam_id": "PF10014", "short_name": "2OG-Fe_Oxy_2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10015", "short_name": "ThermoDBP-RP_arch", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10016", "short_name": "DUF2259", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)", "origins": [ { "cited_uniprot_accession": "A0R5M8", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/ergothioneine-biosynthesis-i.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY-7255", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/ergothioneine-biosynthesis-i.yaml" } ], "pfam_ids": [ "PF10017" ], "protein_name": "Histidine N-alpha-methyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLSLANYLAADSAAEALRRDVRAGLTAAPKSLPPKWFYDAVGSDLFDQITRLPEYYPTRTEAQILRTRSAEIIAAAGADTLVELGSGTSEKTRMLLDAMRDAELLRRFIPFDVDAGVLRSAGAAIGAEYPGIEIDAVCGDFEEHLGKIPHVGRRLVVFLGSTIGNLTPAPRAEFLSTLADTLQPGDSLLLGTDLVKDTGRLVRAYDDAAGVTAAFNRNVLAVVNRELSADFDLDAFEHVAKWNSDEERIEMWLRARTAQHVRVAALDLEVDFAAGEEMLTEVSCKFRPENVVAELAEAGLRQTHWWTDPAGDFGLSLAVR", "sequence_length": 321, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ada83b7edd08ab50da879ce546186a74a7d4e6b982c8fab67e04abd26fa20bd9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0R5M8.json", "taxon_id": "246196", "uniprot_accession": "A0R5M8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dinb-2-pf12867.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dinb-2-pf12867.yaml" } ], "pfam_ids": [ "PF03781", "PF10017", "PF12867" ], "protein_name": "Ergothioneine biosynthesis protein A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSPLPCPSKKVEIVDIHRNDVEFSLVNEIRKGLNPPEGTPRSLPTMLLYDAQGLKLFEEITYVDEYYLTNAEIEVLQNHSKKIVERVPENAQLLELGSGNLRKIKILLQEFERTGKHVDYYALDLSLSELQRTFVEVSSDEYSHVDLHGLHGTYDDALAWLSNPQNLQRPTVVMSMGSSIGNFSREGAAEFLAQFARLLKPSDLMIIGLDACTDPDKVYKAYNDSKGITQRFYENGLLHANAVLGYEAFQLSEWEVVTDYDVAGGRHRAFYSPKQNVTIDGVLLQKGEKLVFEEATKYSPQQREQLWRDANLVLCEELGISSEEYHIHLLSPPTLSLPSQPSEYAANPVPSFKEFQSLWTAWDTVTKAMVPREELLAKPIKLRNALIFYFGHIPTFTDIHLTRALGGSPTEPRNYRQIFERGIDPDVDNPEHCHSHSEIPDEWPPLAEILDYQDRVRSRVDSVLQRDDITQNRCLGEALWIGFEHEAMHLETFLYMLLQSDKTLPPPLADRPDFEKLFHQARANAKPNEWFAIPEQTLSIGFDDTDEQSLPDVSFGWDNEKPQRTITVRAFEAQAHAITNGEYAKYLQATRQRRRPESWVLTHSDENYPISKGVTLESSQATKDFMDNFAVRTVFGPVPLEFAQDWPVMASYDELALYAEWVGCRLPTYEEVKSIYNYSAQLKETRQHEPSDHESNGVKGINRDMVTNGHSKVHQDKPRTPERQPIQPPSQSTMPVFVDLHGCNVGFKHWHPTPVIQNGDRLAGHGELGGVWEWTSTPLTPHDGFKAMDIYPGYTADFFDGKHNIVLGGSWATHPRIAGRTTFVNWYQHNYPYTWAGARLVRSQ", "sequence_length": 844, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a17b0a1068915873ade5a67c3c3cf8077512e0c6468f15e0edd02443dfbefb28", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4WZV3.json", "taxon_id": "330879", "uniprot_accession": "Q4WZV3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dinb-2-pf12867.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dinb-2-pf12867.yaml" } ], "pfam_ids": [ "PF03781", "PF10017", "PF12867" ], "protein_name": "Ergothioneine biosynthesis protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPSAESMTPSSALGQLKATGQHVLSKLQQQTSNADIIDIRRVAVEINLKTEITSMFRPKDGPRQLPTLLLYNERGLQLFERITYLEEYYLTNDEIKILTKHATEMASFIPSGAMIIELGSGNLRKVNLLLEALDNAGKAIDYYALDLSREELERTLAQVPSYKHVKCHGLLGTYDDGRDWLKAPENINKQKCILHLGSSIGNFNRSDAATFLKGFTDVLGPNDKMLIGVDACNDPARVYHAYNDKVGITHEFILNGLRNANEIIGETAFIEGDWRVIGEYVYDEEGGRHQAFYAPTRDTMVMGELIRSHDRIQIEQSLKYSKEESERLWSTAGLEQVSEWTYGNEYGLHLLAKSRMSFSLIPSVYARSALPTLDDWEALWATWDVVTRQMLPQEELLEKPIKLRNACIFYLGHIPTFLDIQLTKTTKQAPSEPAHFCKIFERGIDPDVDNPELCHAHSEIPDEWPPVEEILTYQETVRSRLRGLYAHGIANIPRNVGRAIWVGFEHELMHIETLLYMMLQSDKTLIPTHIPRPDFDKLARKAESERVPNQWFKIPAQEITIGLDDPEDGSDINKHYGWDNEKPPRRVQVAAFQAQGRPITNEEYAQYLLEKNIDKLPASWARLDNENISNGTTNSVSGHHSNRTSKQQLPSSFLEKTAVRTVYGLVPLKHALDWPVFASYDELAGCAAYMGGRIPTFEETRSIYAYADALKKKKEAERQLGRTVPAVNAHLTNNGVEITPPSSPSSETPAESSSPSDSNTTLITTEDLFSDLDGANVGFHNWHPMPITSKGNTLVGQGELGGVWEWTSSVLRKWEGFEPMELYPGYTADFFDEKHNIVLGGSWATHPRIAGRKSFVNWYQRNYPYAWVGARVVRDL", "sequence_length": 876, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "37da40672f467a94d9739cc4f3652f9ddf780d89ff047f8d79c3384f7a1b76fc", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q7RX33.json", "taxon_id": "367110", "uniprot_accession": "Q7RX33", "uniprot_release": "2026_03" } ], "pfam_id": "PF10017", "short_name": "Methyltransf_33", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10020", "short_name": "DUF2262", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10021", "short_name": "PARG_cat_microb", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10022", "short_name": "BcGHD", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10023", "short_name": "Aminopep", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10025", "short_name": "DUF2267", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2268-ipr018728.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018728", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2268-ipr018728.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2268-pf10026.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10026", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2268-pf10026.yaml" } ], "pfam_ids": [ "PF10026" ], "protein_name": "Uncharacterized protein YjaZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVEQTYSWLRKAGSIDDLAHYIIPLFSGAEKKNWKGILGHLQHHGMFKNIKEGIQTVSKLKEKGFYGHIQKEEQYLKNKWQGPDVPIVTLPVDERNRRIRLEFGSKSGLAFQDKMFLFLSSDLDFGSVSALMTHEYHHVCRLGHLTKEEKDVTLLDTIIMEGLAEYAVYERFGRSQTAEWTTWYTPEQLQALYEKKIAPHRDIKRDNRLFPQLLFGKGYQPKMLGYAVGFNIVKKYLTASKASTADGLSIPAETFLDAML", "sequence_length": 261, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f04be96ab14e7e8cf307ca2a60bf5b279bfb5f3fe94e56a25f38999ae4906dd2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31596.json", "taxon_id": "224308", "uniprot_accession": "O31596", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2268-ipr018728.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018728", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2268-ipr018728.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2268-pf10026.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10026", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2268-pf10026.yaml" } ], "pfam_ids": [ "PF10026" ], "protein_name": "Uncharacterized protein YjfC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLVMEKTFEQYEKLFSMEEQKREDVFRYTMMRPFEKMWTAIQVPLKAKEPNGYDVIMAAKMLGYLDVRDAESGQKALQILKESHVSETAESALRQCIFFAEREQLRVNAKEIKFGLYIADPNKLQLQKGYCGFGGIPGFIHVWINPNSYNLPRIPSIIAHEFHHNVRFSYIDFHHGSVSVGDYLVIEGLAESFARELFGTERLGPWVTRFDHEDLQYSIDVINEVLDVKGFSEVSRYMFGDPIANDQGFKPAGLSAFAGYAVGYHAVQSFMNQHHITISEATRLDAKTIISQCGLFST", "sequence_length": 299, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bf09d510be3b731f25ca3cbee05f4032d48cd91e2f3a40c015b36be9cad23abb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O34458.json", "taxon_id": "224308", "uniprot_accession": "O34458", "uniprot_release": "2026_03" } ], "pfam_id": "PF10026", "short_name": "DUF2268", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10027", "short_name": "DUF2269", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10028", "short_name": "DUF2270", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10029", "short_name": "DUF2271", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10030", "short_name": "DUF2272", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10031", "short_name": "DUF2273", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 10, "discovery_scanned": true, "example_count": 10, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy-19-like-protein-4-dpy19l4-dpy19-proteins-are-cd20180.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20180", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy-19-like-protein-4-dpy19l4-dpy19-proteins-are-cd20180.yaml" } ], "pfam_ids": [ "PF10034" ], "protein_name": "Probable C-mannosyltransferase DPY19L4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKEEGTSVEPRQRKKQRTSGSQEAKAEKIRRTPAPERAPKYVSFQRFAKIVIGCLAAVISGMMHVFYLSAYHERKFWFSNRQELEREITFQGDSAIYYSYYKDMLKAPSFERGVYELTHNNKTISLKTINAMQQMSLYPELIASVLYQATGSNEVIEPVYFYIGIVFGLQGMYVTALFVTSWLMSGTWLAGMLTVAWFLINRVDTTRIEYSIPLRENWALPYFACQVAALTGYLKRNLNTYAERFCYLLLSTSTYTFMMVWEYSHYVLFLQAVSLLLLDIFSVEQSDKVYEVYKVYIFSLFLGYLLQFENPALLVSPLLSLVGAFMLVKCLQLNGKKGTFVAKVIKVFEFYLLCTLPVTLNLIVKMFVPHKENEHVLKFLEVKFGLNMTKNFTLNWLLCQESLQAPSQDFFFRLTQSSLLPFYVLVLIICLLSMTQVFFRRMSGKSKKETVTLEDGRIGERPEIIYHVIHTLLLGSLAMLMEGLKFIWTPYVCMLAAFGVCSPELWMTLLKWLRLRTVHPMLLALILSMAVPTIIGLSLWKEFFPRLITELTELQEFYDPDTVELMTWIKRQAPVAAVFAGSPQLMGVIKLCTGWTVTSLPLYSDDDLLQRNENIYQIYSKRSAEDIYKILTSYKANYLIVEDAICNELGTTRGCRVKDLLDIANGHVVFEEGDKLTYSKYGRFCHEVKINYSPYVNYFTRVYWNRSYFVYKVNTVISFQS", "sequence_length": 722, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ebccb0404decc84f60ff0387f7130628ce3d4aad2248114ecb5f934e236c09bf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2AJQ3.json", "taxon_id": "10090", "uniprot_accession": "A2AJQ3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-c-linked-glycosylation-go0018103.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0018103", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-c-linked-glycosylation-go0018103.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy-19-like-protein-1-dpy19l1-dpy19-proteins-are-cd20178.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20178", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy-19-like-protein-1-dpy19l1-dpy19-proteins-are-cd20178.yaml" } ], "pfam_ids": [ "PF10034" ], "protein_name": "Protein C-mannosyl-transferase DPY19L1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLQARSKHRDAAPRPPRSARSSPPPLSGASEVDAGELGSERTPPSPGRRGAAGRKGPRAGTAAPAPDGLAGRLAAGLHWALGLRRGRGRTWSTLLLASFAALLHWSHITHLFENDRHFSHLSTLEREMAFRTEMGLYYSYFKTIVEAPSFLNGVWMIMNDKLTEYPLVINTLKRFNLYPEVILASWYRIYTKIMDLIGIQTKICWTVTRGEGLSPIESCEGLGDPACFYVAVIFMLNGLMMALFFIYGTYLSGSRLGGVVTVLCFFFNHGECTRVMWTPPLRESFSYPFLVLQMLLVTHILRAPELCRGSLIALCISNVLFMLPWQFAQFVLLTQIASLFAVYVVGYIDTHKLQKIIYMHMISLVLCFVLMFGNSMLLTSYYASSLVIIWGMLAMKPQFLRMNVSELSLWVIQGCGWLFGTVILKSVTSRIFGIADDAHIGNLLTSKFFSYKDFDTLLYTCAAEFDFMEKETPLRYTKTLLLPVVLVTVAAIVRKIFNDMRGVVAKQRTHTRKQQFEHGELVYHALQLLAYTALGVLIMRLKLFLTPHMCVMASLICSRQLFGWLFGKVHPGAVVFAILAAMSIQGSANLQTQWNIVGEFSNLPQEELIEWIRYSTKPDAVFAGAMPTMASVKLSALRPVVNHPHYEDAGLRARTKIVYSMYSRKAPEDVKKELMKLKVNYYILEESWCIRRSKPGCSMPEIWDVEDPDNAGKTPLCNILVKDSKPHFTTVFQNSVYKVLEVLRQ", "sequence_length": 746, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e4dbf84d33b59a5e1bdf414889bbe844b4f03467293ab363b4b8f0dcfc0ec8e9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6X919.json", "taxon_id": "10090", "uniprot_accession": "A6X919", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy-19-like-protein-2-dpy19l2-dpy19-proteins-are-cd20179.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20179", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy-19-like-protein-2-dpy19l2-dpy19-proteins-are-cd20179.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dpy19-pf10034.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10034", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dpy19-pf10034.yaml" } ], "pfam_ids": [ "PF10034" ], "protein_name": "Probable C-mannosyltransferase DPY19L2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVGPTRSKLREGSSDRPQSSCTGQARRRWSAATMEPQQERSAPQERTKWSLLQHFLLGGRKLPSGARNYAARRIQSLNAQNYFQLEEVAKLLLLNRFQFLFTLLDHFREKVQALQMHRFSHRTLFGLAIFVGILHWLHLITLFENDHHFSHLSSLEREMTFRTEMGLYYSYFKTIIEAPSFLEGLWMIMNDRLTEYPLVINTVKRFHLYPEVVIAYWYRTIIGIMNLFGIETKTCWNVTRMEPLNEVQSCEGLGDPACFYIGVIFILNGLMMGLFFIYSTYLSGSQLGGLITVACYFFNHGEATRVMWTPPLRESFSYPFLVLQMYILTIILRTSTVHKKHYMALCFSNVAFMLPWQFAQFILFTQIASLFPMYVVGYIEPSKFQKIIYVNMSSVALCFILMFGNSMYLSSYYSSCLLVTWAIMQKKSKIQKLGGTELQFWLIQGCFWWCGTIILKFLTSKICGVSDHIRLSDLIAARILRYTDFDTLIYTCAPEFDFMEQATPLRYIKTLLLPLILVITYLIFKKIVRDIMCVLYTNTYVRKQLLDNAELIFHTLQLLAFTGLAILIMRLKLFLTPHMCIMASLICSQRLFGWLFCRIHFENVVFGILTMMSIQGCANLHNQWSIMGEFTNLPQEELIHWIKHSTRPDAVFAGAMPTMASIKLSTLRPIVNHPHYEDADLRARTKIVYSVYSRKSAVEVRNNLLKLHVNYYVLEEAWCVVRTKPGCSMLEIWDVEDPSNAANPPLCSILLKDSRPYFTTVFQNSMYRVLKIN", "sequence_length": 773, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "81ed3a9430ca96e532284ee6fb6c6fb10e35797dae31c18672086ed622d8d485", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0CW70.json", "taxon_id": "10090", "uniprot_accession": "P0CW70", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/mannosyltransferase-activity-go0000030.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/mannosyltransferase-activity-go0000030.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-c-linked-glycosylation-go0018103.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0018103", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-c-linked-glycosylation-go0018103.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy19-dpy19-proteins-are-c-mannosyltransferases--cd20177.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20177", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy19-dpy19-proteins-are-c-mannosyltransferases--cd20177.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/glycoside-hydrolase-deacetylase-beta-alpha-barrel-ipr011330.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011330", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/glycoside-hydrolase-deacetylase-beta-alpha-barrel-ipr011330.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P34413", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10034" ], "protein_name": "C-mannosyltransferase dpy-19", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d57e6a53020e6ee736862a30144928c71657caa055994206ee602fd9fefec48a", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAKKPKNSPEKSKYSSDTSSSLYSQTWLASVVIIGLLVGYINYQHVYTLFENDKHFSHLADFEREMAYRTEMGLYYSYYKTIINAPSFLEGVQEITHDTVTEHGHEINTLNRFNLYPEVILAFLYRPFRAFAKSANWQIELCWQVNRGELRPVESCEGIGNPHYFYITGVFIVAGTVASSIFYLGVLVSDSIFGGFLSVLCFAFNHGEATRVQWTPPLRESFAFPFIIGHIAILTFVIKYKKSGHSMILLLTSMAVPALLFWQFTQFAFFTQICSIFLAFSLDLIPFSTAKTVIHSHIISFLIGFLLLFGNEMMITALYFPSILALGMIIYISPLLSNLKFRPAYVLFLAIIFASITLGLKIGLSKGLGIEDDAHIFDILRSKFTSFANFHTRLYTCSAEFDFIQYSTIEKLCGTLLIPLALISLVTFVFNFVKNTNLLWRNSEEIGENGEILYNVVQLCCSTVMAFLIMRLKLFMTPHLCIVAALFANSKLLGGDRISKTIRVSALVGVIAILFYRGIPNIRQQLNVKGEYSNPDQEMLFDWIQHNTKQDAVFAGTMPVMANVKLTTLRPIVNHPHYEHVGIRERTLKVYSMFSKKPIAEVHKIMKEMGVNYFVFQLMNCSNDERRPECVYRGMWDEEDPKNSGRTALCDLWILAANSKDNSRIAPFKIVYNANRNYIVLKI", "sequence_length": 683, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d57e6a53020e6ee736862a30144928c71657caa055994206ee602fd9fefec48a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P34413.json", "taxon_id": "6239", "uniprot_accession": "P34413", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy-19-like-protein-1-dpy19l1-dpy19-proteins-are-cd20178.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20178", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy-19-like-protein-1-dpy19l1-dpy19-proteins-are-cd20178.yaml" } ], "pfam_ids": [ "PF10034" ], "protein_name": "Protein C-mannosyl-transferase DPY19L1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGRPPPEGRPPPRPRTGRAPRGRRRAVFAAVLHWSHITHLFENDRHFSHLSTLEREMAFRTEMGLYYSYFKTIVEAPSFLNGVWMIMNDKLTEYPLVINTLKRFNLYPEVILASWYRIYTKIMDLIGIQTKICWTVTRGEGLSPIESCEGLGDPACFYVAVIFILNGLMMALFFIYGTYLSGSRLGGLVTVLCFFFNHGECTRVMWTPPLRESFSYPFLVLQMLLVTHILRATKLYRGSLIALCISNVFFMLPWQFAQFVLLTQIASLFAVYVVGYIDICKLRKIIYIHMISLALCFVLMFGNSMLLTSYYASSLVIIWGILAMKPHFLKINVSELSLWVIQGCFWLFGTVILKYLTSKIFGIADDAHIGNLLTSKFFSYKDFDTLLYTCAAEFDFMEKETPLRYTKTLLLPVVLVVFVAIVRKIISDMWGVLAKQQTHVRKHQFDHGELVYHALQLLAYTALGILIMRLKLFLTPHMCVMASLICSRQLFGWLFCKVHPGAIVFAILAAMSIQGSANLQTQWNIVGEFSNLPQEELIEWIKYSTKPDAVFAGAMPTMASVKLSALRPIVNHPHYEDAGLRARTKIVYSMYSRKAAEEVKRELIKLKVNYYILEESWCVRRSKPGCSMPEIWDVEDPANAGKTPLCNLLVKDSKPHFTTVFQNSVYKVLEVVKE", "sequence_length": 675, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c139b4ba32ca93bfca78bffd5a3e5cfaaec5d5993983d74667777c7eceb4f30e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2PZI1.json", "taxon_id": "9606", "uniprot_accession": "Q2PZI1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy-19-like-protein-2-dpy19l2-dpy19-proteins-are-cd20179.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20179", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy-19-like-protein-2-dpy19l2-dpy19-proteins-are-cd20179.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dpy19-pf10034.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10034", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dpy19-pf10034.yaml" } ], "pfam_ids": [ "PF10034" ], "protein_name": "Probable C-mannosyltransferase DPY19L2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKQGVSSKRLQSSGRSQSKGRRGASLAREPEVEEEMEKSALGGGKLPRGSWRSSPGRIQSLKERKGLELEVVAKTFLLGPFQFVRNSLAQLREKVQELQARRFSSRTTLGIAVFVAILHWLHLVTLFENDRHFSHLSSLEREMTFRTEMGLYYSYFKTIIEAPSFLEGLWMIMNDRLTEYPLIINAIKRFHLYPEVIIASWYCTFMGIMNLFGLETKTCWNVTRIEPLNEVQSCEGLGDPACFYVGVIFILNGLMMGLFFMYGAYLSGTQLGGLITVLCFFFNHGEATRVMWTPPLRESFSYPFLVLQMCILTLILRTSSNDRRPFIALCLSNVAFMLPWQFAQFILFTQIASLFPMYVVGYIEPSKFQKIIYMNMISVTLSFILMFGNSMYLSSYYSSSLLMTWAIILKRNEIQKLGVSKLNFWLIQGSAWWCGTIILKFLTSKILGVSDHIRLSDLIAARILRYTDFDTLIYTCAPEFDFMEKATPLRYTKTLLLPVVMVITCFIFKKTVRDISYVLATNIYLRKQLLEHSELAFHTLQLLVFTALAILIMRLKMFLTPHMCVMASLICSRQLFGWLFRRVRFEKVIFGILTVMSIQGYANLRNQWSIIGEFNNLPQEELLQWIKYSTTSDAVFAGAMPTMASIKLSTLHPIVNHPHYEDADLRARTKIVYSTYSRKSAKEVRDKLLELHVNYYVLEEAWCVVRTKPGCSMLEIWDVEDPSNAANPPLCSVLLEDARPYFTTVFQNSVYRVLKVN", "sequence_length": 758, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "84dd71163021b93fbd8d27abdc038d1d1ce6756cf1dfabd8dab369bb3edc04a4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NUT2.json", "taxon_id": "9606", "uniprot_accession": "Q6NUT2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy-19-like-protein-3-dpy19l3-dpy19-proteins-are-cd20181.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20181", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy-19-like-protein-3-dpy19l3-dpy19-proteins-are-cd20181.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dpy19-pf10034.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10034", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dpy19-pf10034.yaml" } ], "pfam_ids": [ "PF10034" ], "protein_name": "Protein C-mannosyl-transferase DPY19L3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMSIRQRREIRATEVSEDFPAQEENVKLENKLPSGCTSRRLWKILSLTIGGTIALCIGLLTSVYLATLHENDLWFSNIKEVEREISFRTECGLYYSYYKQMLQAPTLVQGFHGLIYDNKTESMKTINLLQRMNIYQEVFLSILYRVLPIQKYLEPVYFYIYTLFGLQAIYVTALYITSWLLSGTWLSGLLAAFWYVTNRIDTTRVEFTIPLRENWALPFFAIQIAAITYFLRPNLQPLSERLTLLAIFISTFLFSLTWQFNQFMMLMQALVLFTLDSLDMLPAVKATWLYGIQITSLLLVCILQFFNSMILGSLLISFNLSVFIARKLQKNLKTGSFLNRLGKLLLHLFMVLCLTLFLNNIIKKILNLKSDEHIFKFLKAKFGLGATRDFDANLYLCEEAFGLLPFNTFGRLSDTLLFYAYIFVLSITVIVAFVVAFHNLSDSTNQQSVGKMEKGTVDLKPETAYNLIHTILFGFLALSTMRMKYLWTSHMCVFASFGLCSPEIWELLLKSVHLYNPKRICIMRYSVPILILLYLCYKFWPGMMDELSELREFYDPDTVELMNWINSNTPRKAVFAGSMQLLAGVKLCTGRTLTNHPHYEDSSLRERTRAVYQIYAKRAPEEVHALLRSFGTDYVILEDSICYERRHRRGCRLRDLLDIANGHMMDGPGENDPDLKPADHPRFCEEIKRNLPPYVAYFTRVFQNKTFHVYKLSRNK", "sequence_length": 716, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "92ad39f12508f3b7e0826a4811ad99b28d98229afb7086afeb877aea64b5c8dc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZPD9.json", "taxon_id": "9606", "uniprot_accession": "Q6ZPD9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy-19-like-protein-3-dpy19l3-dpy19-proteins-are-cd20181.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20181", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy-19-like-protein-3-dpy19l3-dpy19-proteins-are-cd20181.yaml" } ], "pfam_ids": [ "PF10034" ], "protein_name": "Protein C-mannosyl-transferase DPY19L3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMYIRQRKETKPIEVSEDFPSPKEDVKLEKKLPSGCASGRFWKILSSAVGGTVALCIGLLTSVYLATLHENDLWFSNIKEVEREISFRTECGLYYSYYKQMLQAPTLLQGFHGLIYDNKTESMRTINLLQRMNIYQEVFLSVLYRVLPIQKYLEPVYFYIYTLFGLQAVYVTALYITSWLLSGTWLSGLLAALWYVTNRIDTTRVEFTIPLRENWALPFFAIQIAAITYFLRPNLQPLSERLTLLAIFVSTFLFSLTWQFNQFMMLLQALVLFILDSLDMLPAMKATWLYGIQISCLLLVCTLQFFNSMILGSLLISFNLSVLIVRKLQKNLKTGSFLTRIWKLLLHLLLVFCLTLFLNNIIKKVLNLKSDEHIFKFLKAKFGFGATRDFDANLYLCEEAFGLLPLNTFQRLSETLLFYAYMFVLVVTVVTASVVAFHNLSDSTSLKSMDQTRKRAVDLKPEAAYNLIHTILFGVLALSTMRMKYLWTSHMCVFASFGLCSSEVWELLLRLVHLCNPKRIWVLRYLVPVLTLLYLCYKSWPGVMDELSELKEFYDPDTVELMTWINSNTPRKAVFAGSMQLLAGVKLCTGRTLTNHPHYEDKSLRERTQAVYQIYAKRSPEEVHALLRSFGTDFVILEDSICYERRHHRGCRLRDLLDVANGHEMDGPGESDPDLRPADHPRFCEEIKRNLPSYAAHFTRVFQNKTFHVYKLSRNK", "sequence_length": 716, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "707383a9769da70db327792293f6bffdfa6457d108a75b8a49b040bb4279b360", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q71B07.json", "taxon_id": "10090", "uniprot_accession": "Q71B07", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy-19-like-protein-4-dpy19l4-dpy19-proteins-are-cd20180.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20180", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy-19-like-protein-4-dpy19l4-dpy19-proteins-are-cd20180.yaml" } ], "pfam_ids": [ "PF10034" ], "protein_name": "Probable C-mannosyltransferase DPY19L4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEEEGPPVELRQRKKPKSSENKESAKEEKISDIPIPERAPKHVLFQRFAKIFIGCLAAVTSGMMYALYLSAYHERKFWFSNRQELEREITFQGDSAIYYSYYKDMLKAPSFERGVYELTHNNKTVSLKTINAVQQMSLYPELIASILYQATGSNEIIEPVYFYIGIVFGLQGIYVTALFVTSWLMSGTWLAGMLTVAWFVINRVDTTRIEYSIPLRENWALPYFACQIAALTGYLKSNLNTYGERFCYLLMSASTYTFMMMWEYSHYLLFLQAISLFLLDTFSVEQSDKVYEVYKIYIFSLFLGYLLQFENPALLVSPLLSLVAALMLAKCLQLNVKKGSFVAKIIKVINFYLVCTLTITLNIIMKMFVPHKENGHMLKFLEVKFGLNMTKNFTMNWLLCQESLQAPSQDFFLRLTQSSLLPFYILVLIICFLSMLQVIFRRINGKSLKETVTLEDGRIGERPEIIYHVIHTILLGSLAMVIEGLKYIWIPYVCMLAAFGVCSPELWMTLFKWLRLRTVHPILLALILSMAVPTIIGLSLWKEFFPRLMTELMELQEFYDPDTVELMTWIKRQAPVAAVFAGSPQLMGAIKLCTGWMVTSLPLYNDDDLLKRNENIYQIYSKRSAEDIYKILTSYKANYLIVEDAICNEVGPMRGCRVKDLLDIANGHMVCEEGDKLTYSKYGRFCHEVKINYSPYVNYFTRVYWNRSYFVYKINTVISFQS", "sequence_length": 723, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "752c4565e534880cb6c7dfcfe6541d699f8cd481f42847642808078bb51e19bf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Z388.json", "taxon_id": "9606", "uniprot_accession": "Q7Z388", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-c-linked-glycosylation-go0018103.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0018103", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-c-linked-glycosylation-go0018103.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy19-dpy19-proteins-are-c-mannosyltransferases--cd20177.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20177", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-mannosyltransferase-dpy19-dpy19-proteins-are-c-mannosyltransferases--cd20177.yaml" } ], "pfam_ids": [ "PF10034" ], "protein_name": "C-mannosyltransferase dpy-19 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml" } ], "pfam_ids": [ "PF02588", "PF10035" ], "protein_name": "UPF0750 membrane protein YitT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLDQTKKLLIVIIGALLNAAGLNLFLIPADVYASGFTGVAQLLSSVVDQYAPFYISTGTLLFLLNIPVGILGWLKVGKSFTVYSILSVALTTLFMGILPETSLSHDILLNAVFGGVISAVGIGLTLKYGASTGGLDIVAMVLAKWKDKPVGTYFFILNGIIILTAGLLQGWEKALYTLVTLYVTTRVIDAIHTRHMKLTAMIVTKKADEIKEAIYGKMVRGITTVPAKGAFTNEQKEMMIIVITRYELYDLEKIVKEVDPKAFTNIVQTTGIFGFFRKD", "sequence_length": 280, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "73eb7791df99f60210a4c3604ff53f31dfca612f7668dd4e93750cc10db53cf5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P39803.json", "taxon_id": "224308", "uniprot_accession": "P39803", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-terminal-domain-of-bacillus-subtilis-yitt-and-similar-protein-domain-cd16380.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd16380", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-terminal-domain-of-bacillus-subtilis-yitt-and-similar-protein-domain-cd16380.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2179-ipr019264.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2179-ipr019264.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml" } ], "pfam_ids": [ "PF02588", "PF10035" ], "protein_name": "UPF0750 membrane protein YpjC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLGEIRLKNIFFILIGAAIFSFGLVHFNMQNNLAEGGFTGITLLLYALFHISPSISNLVLNIPIFFIGWRLLGRTMFVYTLVGTVALSLFLSIFQRYEIHMPLQHDLALAALFAGVFIGAGLGIIFKFGGTTGGVDIIARLVNKYFGIPMGRTMFAFDACVIILSLLTYLSYKEAMYTLVAVFVAARLIDFIQEGGYAAKGATIISSKNDLIQKKILEEMERGVTILKGQGSYTKEDIDVLYCVVPKNELVMLKSVINSIDPHAFVAVSDVHDVLGEGFTLDENKNPLPR", "sequence_length": 290, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5ba97ecc2bf948e1582b3720791bec74b0ed3ba31fb7157eca5713cd12fef292", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P42978.json", "taxon_id": "224308", "uniprot_accession": "P42978", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-terminal-domain-of-bacillus-subtilis-yitt-and-similar-protein-domain-cd16380.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd16380", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-terminal-domain-of-bacillus-subtilis-yitt-and-similar-protein-domain-cd16380.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2179-ipr019264.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2179-ipr019264.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml" } ], "pfam_ids": [ "PF02588", "PF10035" ], "protein_name": "UPF0750 membrane protein YqfU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTPTKQHKKETFTHFIFRVFMILVGAASAAVSIELFLIPNDFIDGGIIGVSLILDHLFMSNPFLNFAFFVVILNIPFMIFGYKYIGKTFLVSTFIGIVGLAVIESSLHHVEAITTQPILATVFGGLLLGFGVGLVIRNGGSMDGTEILGILLTKKLPFSVGEFVMFINVFIFIWAVFVFGPEQAMYSFMTYYIAMKTIDAVIQGLDETKAVIIVSEQYDEISDAILHRLGRGTTKLKGKGGYTDEEKDVIYAVVTRLEVTKLKSIVFEVDQNAFITIMNTHETRGGKFKNAIH", "sequence_length": 293, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "010b836bf1347ac0f82644ffae6600a7c2a04b237399fc89819d7656b86809f9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P54478.json", "taxon_id": "224308", "uniprot_accession": "P54478", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-terminal-domain-of-bacillus-subtilis-yitt-and-similar-protein-domain-cd16380.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd16380", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-terminal-domain-of-bacillus-subtilis-yitt-and-similar-protein-domain-cd16380.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2179-ipr019264.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2179-ipr019264.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml" } ], "pfam_ids": [ "PF02588", "PF10035" ], "protein_name": "UPF0750 membrane protein YxkD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKRMLDVLMLVIGAFFFALAVNLFAIPNDLGEGGVTGITLILYYLFQWSPGVTNFILNAFLLLIGYKFLDGKTTVYTIIAVAANSLFLHLTHGWSIPSDELIINTIFAGVFAGVGIGMIIRVGGTTAGSAILARIANKYLDWNISYALLFFDLIVVFSSYFIIGAEKMMFTIVMLYIGTKVMDFIIEGLNTKKAITVISENKSEIAEQVNTLMDRGVTILSGKGNYTGQSKEILYIVINKQELSMLKKIIRSCDKKAFVIVHDVRDVFGEGFVDISK", "sequence_length": 278, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6bd8d42392df7774b54a3101cea7d0fc8f2c7b3c1915e42c03163e3df1118836", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P94357.json", "taxon_id": "224308", "uniprot_accession": "P94357", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-terminal-domain-of-bacillus-subtilis-yitt-and-similar-protein-domain-cd16380.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd16380", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-terminal-domain-of-bacillus-subtilis-yitt-and-similar-protein-domain-cd16380.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2179-ipr019264.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2179-ipr019264.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yitt-membrane-pf02588.yaml" } ], "pfam_ids": [ "PF02588", "PF10035" ], "protein_name": "UPF0750 membrane protein YdeO", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTPKKHKKFKAKMILQIIMVIIGGIIAAYGLETVLIPNSVSDGGVTGLSIVGSQLFNLPLGILIAVINIPFVWLGYKQIGKSFALLSIIGIVSLAAGTSFFHHTPAIIEGDTLLITVVGGIILGFGMGLALRNGGALDGIDMLAVLLSRKLPFGTSDLILFLNLFVFIFVSTVFGLQGALLSVIAYYIASKVIHVVEEGLSGSKTFQIITTQPELMVETIRDQLGRSATYKEAYGGFSHEKFKEITCVINRLEETKLKEIINDIDKTAFVTVYDVAEVKGSNFRNLNHH", "sequence_length": 290, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2642708bc1fba2ab7a25c7ea88e7c25b5e4f6d5b51bc6560e579fce6319e5574", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P96672.json", "taxon_id": "224308", "uniprot_accession": "P96672", "uniprot_release": "2026_03" } ], "pfam_id": "PF10035", "short_name": "DUF2179", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10038", "short_name": "DUF2274", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10039", "short_name": "DUF2275", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus thermophilus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/crispr-cas6-pf10040.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10040", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/crispr-cas6-pf10040.yaml" } ], "pfam_ids": [ "PF10040" ], "protein_name": "CRISPR-associated endoribonuclease Cas6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKLVFTFKRIDHPAQDLAVKFHGFLMEQLDSDYVDYLHQQQTNPYATKVIQGKENTQWVVHLLTDDHEDKVFMTLLQIKEVSLNDLPKLSVEKVEIQELGADKLLEIFNSEENQTYFSIIFETPTGFKSQGSYVIFPSMRLIFQSLMQKYGRLVENQPEIEEDTLDYLSEHSTITNYRLETSYFRVHRQRIPAFRGKLTFKVQGAKTLKAYVKMLLTFGEYSGLGMKTSLGMGGIKLEERKD", "sequence_length": 243, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d69810820fd9eaed2df0739c16b32edeca7f605a875724fe895d50d1a69fe859", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0A7HF73.json", "taxon_id": "1308", "uniprot_accession": "A0A0A7HF73", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/crispr-cas6-pf10040.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10040", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/crispr-cas6-pf10040.yaml" } ], "pfam_ids": [ "PF10040" ], "protein_name": "CRISPR-associated endoribonuclease Cas6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAARRGGIRRTDLLRRSGQPRGRHRASAAESGLTWISPTLILVGFSHRGDRRMTEHLSRLTLTLEVDAPLERARVATLGPHLHGVLMESIPADYVQTLHTVPVNPYSQYALARSTTSLEWKISTLTNEARQQIVGPINDAAFAGFRLRASGIATQVTSRSLEQNPLSQFARIFYARPETRKFRVEFLTPTAFKQSGEYVFWPDPRLVFQSLAQKYGAIVDGEEPDPGLIAEFGQSVRLSAFRVASAPFAVGAARVPGFTGSATFTVRGVDTFASYIAALLWFGEFSGCGIKASMGMGAIRVQPLAPREKCVPKP", "sequence_length": 314, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c01487fcd8b8aeda2dffc322877b3be23b2ee3029a75e86e5c161383cfc3307c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WPJ1.json", "taxon_id": "83332", "uniprot_accession": "P9WPJ1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cas6-n-pf17952.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17952", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cas6-n-pf17952.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/crispr-cas6-pf10040.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10040", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/crispr-cas6-pf10040.yaml" } ], "pfam_ids": [ "PF10040", "PF17952" ], "protein_name": "CRISPR-associated endoribonuclease Cas6 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLIFKIGYNVIPLQDVILPTPSSKVLKYLIQSGKLIPSLKDLITSRDKYKPIFISHLGFNQRRIFQTNGNLKTITKGSRLSSIIAFSTQANVLSEVADEGIFETVYGKFHIMIESIEIVEVEKLKEEVEKHMNDNIRVRFVSPTLLSSKVLLPPSLSERYKKIHAGYSTLPSVGLIVAYAYNVYCNLIGKKEVEVRAFKFGILSNALSRIIGYDLHPVTVAIGEDSKGNLRKARGVMGWIEFDIPDERLKRRALNYLLTSSYLGIGRSRGIGFGEIRLEFRKIEEKEG", "sequence_length": 289, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f038784ecb12c6ac558a6eccdd380acafb7a7be6ce41d35159086726835f5617", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q97WV8.json", "taxon_id": "273057", "uniprot_accession": "Q97WV8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cas6-n-pf17952.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17952", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cas6-n-pf17952.yaml" } ], "pfam_ids": [ "PF10040", "PF17952" ], "protein_name": "CRISPR-associated endoribonuclease Cas6 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLIFKIGYNVIPLQDVILPTPSSKVLKYLIQSGKLLPSLNNLITSRDKYKPIFISHLGLNQRRIFQTNGNLKTISRGSKLSSTIAFSTQVNVLPELDEGVFETIYGKFHITIESVEIVEVEKLKEEVEKHMNDNIRVRFISPTLLSSKVLLPPSLSERYKRVNAGYSTLPSVGLIVAYAYNVYCNLIGKKEVEVRAFKFGVISNALSRIIGYDLHPVTIVIGEDSKGNLRKARGVMGWIEFDIPDEKLKRRALRYLLASSYLGIGRSRGIGFGEIKLEFIKREENH", "sequence_length": 287, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "93a27d68eb3edffae7104fe56607280771eadf555518d943ecbf4957e0fef23a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q97Y96.json", "taxon_id": "273057", "uniprot_accession": "Q97Y96", "uniprot_release": "2026_03" } ], "pfam_id": "PF10040", "short_name": "CRISPR_Cas6", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10041", "short_name": "DUF2277", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2278-pf10042.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10042", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2278-pf10042.yaml" } ], "pfam_ids": [ "PF10042" ], "protein_name": "Uncharacterized protein YukJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVQQYGVLKGIVLDMKRETDDDSPHFQVKMLGEENTYYRCAINVMSSSEESEVLYLADDQFDSGSITILPNMPYGYTRINEANREVALDYVRGNLFDPREMKPLPHEITGPDNDLNDFIETYMKKAQDEKTPVYIFGSKFGPEQAADKIFGFTPTNGMHNIHMNQGNAMDTRWKKDNGSWHDGGILIQFADQWAAVFLAFLSQSWCTDENGNPVRDCDHTQTSA", "sequence_length": 225, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5ce00193e2f4851be8d3dad25a19f6c28bb40c768678762cc3a87ea812690081", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0SPB1.json", "taxon_id": "224308", "uniprot_accession": "C0SPB1", "uniprot_release": "2026_03" } ], "pfam_id": "PF10042", "short_name": "DUF2278", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/yfim-family-lipoprotein-nf008028.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008028", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/yfim-family-lipoprotein-nf008028.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2279-pf10043.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10043", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2279-pf10043.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P46126", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10043" ], "protein_name": "Uncharacterized protein YfiM", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c873d7358d164c14443b023f710b84ecd1e76056cc1099e3d22f1292cbbe4e8a", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRILFVCSLLLLSGCSHMANDSWSGQDKAQHFIASAMLSAAGNEYSQHQGMSRDRSAMFGLMFSVSLGASKELWDSRPEGSGWSWKDLAWDVAGASTGYTVWQLTRH", "sequence_length": 107, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c873d7358d164c14443b023f710b84ecd1e76056cc1099e3d22f1292cbbe4e8a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P46126.json", "taxon_id": "83333", "uniprot_accession": "P46126", "uniprot_release": "2026_03" } ], "pfam_id": "PF10043", "short_name": "DUF2279", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10045", "short_name": "DUF2280", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10047", "short_name": "DUF2281", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10048", "short_name": "BufA1", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2283-pf10049.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10049", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2283-pf10049.yaml" } ], "pfam_ids": [ "PF10049" ], "protein_name": "Uncharacterized protein YuzE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKAVTYDTDSELAYIYVLPPKKNRNVRTEELRVNDCLLLDISQDGKIAGFECFGEAAHLCAPFAGKSRLYVKDSDGYHFRVCQHASVRSCYTVYRVTFCFSDGDYQEFAGFDLDGTMYHSAFLQRLTEK", "sequence_length": 129, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70ac4362ea96054a76832a51e9e63493c5d145270906a33834944b6c0c430240", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32096.json", "taxon_id": "224308", "uniprot_accession": "O32096", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2283-pf10049.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10049", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2283-pf10049.yaml" } ], "pfam_ids": [ "PF10049" ], "protein_name": "Uncharacterized protein MJ0789", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKVKIDYDYENDNLLVYKEGAKSKKTLDLDDILIDFDENGDVVGIEILNASKLFNVDKYDLLKNLIKFEAVGKITKDLITLNIKLYLLRRKKEIIKESVVKGLNTIGLKEGEVVIG", "sequence_length": 116, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fe0431371e4a0a31f6a26c5c5d573eb6f0f4f08441607981eb4843c14c06aa86", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58199.json", "taxon_id": "243232", "uniprot_accession": "Q58199", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2283-pf10049.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10049", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2283-pf10049.yaml" } ], "pfam_ids": [ "PF10049" ], "protein_name": "Putative hypoxanthine phosphoribosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRQESLVTKYDYDFENDSIFFYGSNKKYRSSIDLDGIILDIGEDDQIMAIEILDASNRFNLAKEDLRNIKYFEARIEVSEENIRLTMKMSVNKRNKLVDKGLDALGLNSINLPISTQGIELNC", "sequence_length": 123, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ace31e769f60d62b17aa4f165790d3b1dc82f3983a1b0f42caa8a3c0cb49d347", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8Q0D6.json", "taxon_id": "192952", "uniprot_accession": "Q8Q0D6", "uniprot_release": "2026_03" } ], "pfam_id": "PF10049", "short_name": "DUF2283", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10050", "short_name": "DUF2284", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10051", "short_name": "DUF2286", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10052", "short_name": "DUF2288", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10053", "short_name": "DUF2290", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10054", "short_name": "DUF2291", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2292-pf10055.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10055", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2292-pf10055.yaml" } ], "pfam_ids": [ "PF10055" ], "protein_name": "Uncharacterized protein YezD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSKSTIDPEVIEKIISSLETLDFGTVQITVHDSQITQIEKIEKHRFSLKRKESK", "sequence_length": 55, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "73874b37608172108a005a37da6d7030a9610de7b0637abacecd71261f945671", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31538.json", "taxon_id": "224308", "uniprot_accession": "O31538", "uniprot_release": "2026_03" } ], "pfam_id": "PF10055", "short_name": "DUF2292", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10056", "short_name": "DUF2293", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/na-translocating-membrane-potential-generating-system-mpsc-ipr018745.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018745", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/na-translocating-membrane-potential-generating-system-mpsc-ipr018745.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mpsc-pf10057.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mpsc-pf10057.yaml" } ], "pfam_ids": [ "PF10057" ], "protein_name": "Uncharacterized protein YrhF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKKIHEFNDIIRKLRKELFGKGPERIHTVFVENMAVSTLYGNLSASEQFIARTPEGREMVHAARTSLIQDLYSKQTPEGMEELMGAKLVHLFSDIKIEENIAVSVFVFDRKIDEQKEALQS", "sequence_length": 122, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a4ea3023c69337260c84f44d581b916317f1f6c175fb0900453376bb69798c73", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O05398.json", "taxon_id": "224308", "uniprot_accession": "O05398", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/na-translocating-membrane-potential-generating-system-mpsc-ipr018745.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018745", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/na-translocating-membrane-potential-generating-system-mpsc-ipr018745.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lunapark-zinc-ribbon-domain-ipr019273.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/zn-ribbon-10-pf10058.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10058", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/zn-ribbon-10-pf10058.yaml" } ], "pfam_ids": [ "PF10058" ], "protein_name": "Uncharacterized protein At2g24330", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVGEKEHEGTVVESGGEKNDSAVVLSASGEKKTTKRKGLFSRLWNAIFRVRGDDFEKRLKNISKEEATVRNRMKRRSITRRNFIRNLIAFSVFFEVIAVSYAIMTTRDEDLDWKLRSFRILPMFLLPAVAFLLYSSLVGFWRMCDRRDQHTLEKLQAEMLGKINELKERTNYYITQQLIQRYDPDPAAKAAAATVLASKLGAESGLKVFVGDESQLEPTAGKNNAKHSGGLRNRKQTNTRGNSAETTPIHHSDNESNHSGTSERITGTEQNQQMVFEHYNPQEYAAHDGSWISRIAALLVGEDPSQSYALICGNCRMHNGLARKEDFPYITYYCPHCRALNKPKHSEEHSLIAPADTLPKVSLKPMESEVINSSSSTSERGNSPIPLLHTPEIVEEVPETAENETPN", "sequence_length": 408, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2ef52e5e974a81fd3bd852fa8a2c964f5f4aef68a3f92a6abc4e30169ceaf8f4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZQ34.json", "taxon_id": "3702", "uniprot_accession": "Q9ZQ34", "uniprot_release": "2026_03" } ], "pfam_id": "PF10058", "short_name": "Zn_ribbon_10", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10060", "short_name": "DUF2298", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10061", "short_name": "DUF2299", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2300-secreted-ipr018748.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018748", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2300-secreted-ipr018748.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/sporulation-stage-ii-protein-d-amidase-enhancer-lytb-n-terminal-ipr013693.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013693", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sporulation-stage-ii-protein-d-amidase-enhancer-lytb-n-terminal-ipr013693.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2300-pf10062.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10062", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2300-pf10062.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spoiid-pf08486.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spoiid-pf08486.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P76463", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF08486", "PF10062" ], "protein_name": "Uncharacterized protein YfaQ", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1879951cc156e2905d4e84bc95aa0a2d8addc7b2f3e79d87e5c0c450ca7d19de", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGVTKVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVNPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWTQDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD", "sequence_length": 549, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "1879951cc156e2905d4e84bc95aa0a2d8addc7b2f3e79d87e5c0c450ca7d19de", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76463.json", "taxon_id": "83333", "uniprot_accession": "P76463", "uniprot_release": "2026_03" } ], "pfam_id": "PF10062", "short_name": "DUF2300", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2301-pf10063.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2301-pf10063.yaml" } ], "pfam_ids": [ "PF10063" ], "protein_name": "Uncharacterized protein HI_0120", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADPHIKSPMDFLDYLTVIIYRTGFVIAALAVLTVSWYPDLSLTFILIAATCCASSLHIYLKSFRLLFQFATWIGLLFYINHYPALALGGALLTLGGLCFKEYFCFRVPLLNLQPIFVACLWFSWVLNNLIALRIFSIISGVLLLVLAIQKWRMPLHFDIGDKTKYQI", "sequence_length": 168, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b746bb94b15c087dff713ac88a64a7b14d433f3d6f085aecbe4ba4df1b2ed6b9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P43947.json", "taxon_id": "71421", "uniprot_accession": "P43947", "uniprot_release": "2026_03" } ], "pfam_id": "PF10063", "short_name": "DUF2301", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2303-pf10065.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10065", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2303-pf10065.yaml" } ], "pfam_ids": [ "PF10065" ], "protein_name": "Uncharacterized protein YfdQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQNLDATAINQIHALISAQGVNEIISKIGADAVALPENFRIHDLEKFNLNRFRFRGALSTASIDDFTRYSKDLADEGTRCFIDADNMRAVSVLNLGTIDEPGHADNTATLKLKKTAPFSALLSVNGERNSQKSLAEWIEDWADYLVGFDANGDAIQATKAAAAIRKITIEANQTADFEDNDFSGKRSLMESVEAKTKDIMPVAFEFKCVPFEGLKERPFKLRLSIITGDRPVLVLRIIQLEAVQEDMANEFRDLLVEKFKDSKVETFIGTFTA", "sequence_length": 274, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e6b4448bd85bf9edb4915ee924609a554b63d0f6495f1908efb087577e5e5100", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76513.json", "taxon_id": "83333", "uniprot_accession": "P76513", "uniprot_release": "2026_03" } ], "pfam_id": "PF10065", "short_name": "DUF2303", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2304-pf10066.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10066", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2304-pf10066.yaml" } ], "pfam_ids": [ "PF10066" ], "protein_name": "Uncharacterized protein MTH_137", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSSVGEFMIYQVIGTVIGIAGIIVSFARFRESRTSPGGLLLWLILWVSVILFSLNPPFSTRIANLLGIGRGLDFLLIIGILGAYYLLFRIYLMVDRIQQDITELVHEIALREHDD", "sequence_length": 116, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6930550e29a1413c97adba11a4b2219f9768dbcca5d986a8a08bdf61d3d73a95", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O26240.json", "taxon_id": "187420", "uniprot_accession": "O26240", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2304-pf10066.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10066", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2304-pf10066.yaml" } ], "pfam_ids": [ "PF10066" ], "protein_name": "Uncharacterized protein MJ1580", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLIKILEEKLMELIQIVGVIFALFALSRVVLQLKRRSISFNEGLFWIFVWGFVVIFLVFPEFFGYVAEVLGVGRGVDALIYISIVVLFYLIYRLYAKINNLERQITHIVREIAIRDRYEPKKRD", "sequence_length": 124, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ebfb9e10d5d36895c31ad8ca7adccc9f08713fc86b0d82e815cf2889b4440856", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58975.json", "taxon_id": "243232", "uniprot_accession": "Q58975", "uniprot_release": "2026_03" } ], "pfam_id": "PF10066", "short_name": "DUF2304", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10067", "short_name": "DUF2306", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10069", "short_name": "DICT", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Halothiobacillus neapolitanus (strain ATCC 23641 / DSM 15147 / CIP 104769 / NCIMB 8539 / c2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/daba-pf10070.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10070", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/daba-pf10070.yaml" } ], "pfam_ids": [ "PF10070" ], "protein_name": "Probable inorganic carbon transporter subunit DabA2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTLTSLQRSEAQRNHIVDLIDKACLRIAPIWPLDSFVAVNPYLGLIDQPFDTVGRYLEQTVGESLFMDHGWFADKIAQGEITDDDLAQAAQQLDPSISLDTIKQQLAVHRQPAPALPLVTNELDRRDAPPVSEFVIEQVSQFMANYYDRGQALWHLPKEASASLFAQWRRYTLINRSASAVGLKQVRQHLLAVPSDAIDALFWALDQINLPESRLPDYLFTLLKTIGGWASWCRYLHFQAGLHGESQHDLRDLLIIRLVWVALVIKETSSAGRQQWRAKLNDWFDPAKLVASPSATATASTKAQSSRIDEILLAAAEQAFRRRINAGLNRQPADAPDQQAERPTVQAAFCIDVRSEVFRRHLEASSPGLETIGFAGFFGLPIDYCRMGESEARLQNPVLINPAYRAQETGDPAIAQHRHARQSRGAIWKQFKLSAASCFTFVESAGLSYVPRLLADSLGWHRSSLPPDAPGLTPEERARLHPQLVKLDGGALSTQEKVDLAEKVLRGLGLTHTFAPIVLLAGHGSSTTNNPHRAGLDCGACAGQAGDVNARVAVQLLNEAAVRLGLIERGIAIPRDTRFVAALHDTTTDHIELLDLDQSGIESDQLSSLTQALKQAGELTRLERLVTLEAQVDTVDAEKQATFRGRDWSQVRPEWGLAGNAAFIAAPRWRTRGLDLGGRAFLHDYDWRHDKEFGVLNVIMTAPLIVANWINLQYYGSTVDNLHQGAGNKVLHNVVGGTVGVIEGNGGDLRVGLAMQSLHDGEQWRHEPLRLSAYIEAPIAEIDKIIAGHDMLNALINNRWMHILHIDDNGIPHRRHAHGDWRPEPI", "sequence_length": 827, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99d519c55c9d1b46b1885c315ec114f03d6d570910ebbc3629d24a23e41e0191", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D0KWS7.json", "taxon_id": "555778", "uniprot_accession": "D0KWS7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/daba-pf10070.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10070", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/daba-pf10070.yaml" } ], "pfam_ids": [ "PF10070" ], "protein_name": "Probable inorganic carbon transporter subunit DabA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGITSVLTKDNVKKIDTDIDVQERDLNVFITSASRVIAPLWPISTFAARNPWMGLENQPFDQVASWLKNTRDVDIYPSASMIRSAKNKGEIDEDFVEMGLQRWLDSHSYHIPRDVAERFCHAALKLDPLPSDLLSSHELEKLVSECSGLDHIENVFMQPLSSYIENQDGERLVNILDHHVIKWSKLYLDDSQAGWTMPNREEGFYRAWQHLIQYDPALSKKQRERVKGWPKEAHLALQEALFALEIPESEIQTYLEGHLLSLPGWAGMMLWRSQQSSHEHALLTEYLAVRISMEWALIKPYLPLTNERSKKTISIAPLIAAWIHWGGLTLEEWSQMTASEQNEYLSFAYSFDEKLRKKLWLEAWEQTYTDRLSQKIISKQRETGREKSALAQLAFCIDVRSEPFRRQLEKEGPFETIGIAGFFGVPIATCELGSKHSHASLPIIQKPQNKIKEFADEDVFKKYNQRKQAIHSLSHTFKTMKQNALSSLLLPELSGPWLTLQMAARSFVPRKAGRFIRNLREAWLRKPDTKLSLHHDATEAEIPVGFTDEEKVNYARQALKMMGLTENIAPLVVICGHGSQSTNNPYSAALDCGACGGAAGGFNARVLAALCNLSEVREALLAEGIKIPEDTVFAAAEHNTTVDELHWLYVPELSEAAQEAFEQIEAVMPKVRHHVNAERLAQLPNFQSKLKNPKAEANRFAEDWSEIRPEWGLARNAAFIIGKRELTQDCDLEGRAFLHNYDWKQDESGELLANIIVGPGTVAQWINLQYYASTVAPHYYGSGNKATQTVTAGLGVMQGNASDLLAGLPWQSVMESDHEAYHSPLRLLILIQAPREYVERLLNHDSAFLQKVQNGWVRLASLDPEGCWESW", "sequence_length": 871, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7507609f5386776dd33b20b9e108c1f91e138605e2ac8531ba7b07764bbb771c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O34688.json", "taxon_id": "224308", "uniprot_accession": "O34688", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hydrogenovibrio crunogenus (strain DSM 25203 / XCL-2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/daba-pf10070.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10070", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/daba-pf10070.yaml" } ], "pfam_ids": [ "PF10070" ], "protein_name": "Probable inorganic carbon transporter subunit DabA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMLHNAKASDNNELDQAKPLIPQLSDKQKEALNDACGRIAPTWPLDELIAVNPWWEMRDQHISKVSAKLSALSQAQCVMPKSYFQEVWMETLQPQHVQQAIDEMEKDYTVDNLERYLLEEDEHTHWHNVSDFVDSGRDRKYKMAWRDEITHQISQFCADFFRLKDSQGTFSKTYQGLYHEWLATTRQDKGIEILMGEDGLTEHFMDLPESSESLLAEALVGLRVPDSQIADYAHALLLDANGWASWVAYLRWQDRLSNAENDLMMDFLAIRVAWEWVLWQHQKDSDRSVFNELKVMWHHQMSILPDLIATHEAAQAKSWIWQRAAEIAYQSELQQQLKHASRTDQKVETESPPVLLQAAFCIDVRSEVIRRALEAQDSRVETLGFAGFFGLPIEYQPAGTDVSRPQLPGLLKSGIKVTPVMTKVSKGATKQALNRKARWIEWGNAPPATFSMVEATGLMYAFKLLRNSLFPESHTNPINAIPATDAFELTQNDSPLTLDQKVELAAGILHAMGLDHDLAETVMLVGHGSTSCNNPHAAGLDCGACGGQTGEINVRVLAFLLNDESVRQGLLEKDIKIPAQTRFVAAMHNTTTDEFTCFGLNHVDETIQKWLARATEFARQERSTRLGLNHLEGQNLHQSIQRRAKDWSQVRPEWGLSNNAAFIVAPRARTRGVDFQGRAFLHDYDWQQDADNSLLTLIMTAPMVVTNWINLQYYASVCDNHVYGSGNKVLHNVVDGCIGVFEGNGGDLRIGLPMQSLHNGEKWMHEPLRLSVYIDAPQKTIAQVVAENDVVRHLIDNEWLYCFSWAPDGRIHRYFNNQWLESA", "sequence_length": 823, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ecd3ae2b9420159271eac5a3a71fd5c417d12e78ed3bec9d549fa7d5f0a7088f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q31HC3.json", "taxon_id": "317025", "uniprot_accession": "Q31HC3", "uniprot_release": "2026_03" } ], "pfam_id": "PF10070", "short_name": "DabA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2310-pf10071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2310-pf10071.yaml" } ], "pfam_ids": [ "PF10071", "PF29828", "PF29880" ], "protein_name": "Uncharacterized protein HI_1292", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYLIETYFRLTALENNIESQSRLLNAVIDQWRYNGQIIGREIPLYLAEEDGAQGFAMRVICPEQDSLFPQNNNAEVNRALQEAEKCGVIFDGFQLVGDDFNSDQTAENASPAWQVLYTTHLQSCSPIHSGENFAPIPLYKQLKNQPHLTQDLIKWQENWQACDQLQMNGAVLEQQSLAEISDHQSTLSKHGRYLAQEIEKETGIPTYYYLYRVGGQSLKSEKSRCCPSCGANWALKDAIFDTFHFKCDTCRLVSNLSWNFL", "sequence_length": 261, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "48b0e6eb382fae76bb8ae5486a4335ad5a37cd7584f5878cb8c0d1d14acb9148", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44154.json", "taxon_id": "71421", "uniprot_accession": "P44154", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2310-pf10071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2310-pf10071.yaml" } ], "pfam_ids": [ "PF10071", "PF29880" ], "protein_name": "Uncharacterized protein HI_1341", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLCWIGYKNGILPQQNSTLYPWLNPSKCGVIFDGFQLVGDDFNSDQTAENTSPAWQVLYTTHLQSCSPIHSGENFAPIPLYKQLKNQPHLSQDLIKWQENWQACDQLQMNGAVLEQQSLAEISDHQSTLSKHGRYLAQEIEKETGIPTYYYLYRVGGQSLESEKSRCCPSCGANWALKDAIFDTFHFKCDTCRLVSNLSWNFL", "sequence_length": 203, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b8f1701e8de469d916a217124483277fbe80cbcad46629c4b560049128e68ec5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44166.json", "taxon_id": "71421", "uniprot_accession": "P44166", "uniprot_release": "2026_03" } ], "pfam_id": "PF10071", "short_name": "DUF2310", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bradyrhizobium sp. (strain ORS 278)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gapr-dna-bd-pf10073.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10073", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gapr-dna-bd-pf10073.yaml" } ], "pfam_ids": [ "PF10073" ], "protein_name": "UPF0335 protein BRADO1188", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATSAAAKDDDSPATRFAVDQLKSIIERIERLEEEKKAISEDIKDVYAESKGNGFDVKALRTIIRLRKQDPNERQEEESILETYMQALGMI", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3fa2d299905f90ef0f7abe207d0e314b1a4c5e91328367d8413df9ba6d83f853", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4YMG9.json", "taxon_id": "114615", "uniprot_accession": "A4YMG9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gapr-dna-bd-pf10073.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10073", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gapr-dna-bd-pf10073.yaml" } ], "pfam_ids": [ "PF10073" ], "protein_name": "UPF0335 protein BBta_6866", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATSAAAKDDDSPATRFAVDQLRSIIERIERLEEEKKAISEDIKDVYAESKGNGFDVKALRTIIRLRKQDPNERQEEESILETYMQALGMV", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f6aa8cd312b2ffd83114537862f6d5ce75bc0f63f8a6ffeab48cced889433c65", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5ERF9.json", "taxon_id": "288000", "uniprot_accession": "A5ERF9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Brucella anthropi (strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 3331 / NBRC 15819 / NCTC 12168 / Alc 37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gapr-dna-bd-pf10073.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10073", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gapr-dna-bd-pf10073.yaml" } ], "pfam_ids": [ "PF10073" ], "protein_name": "UPF0335 protein Oant_1161", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDEIESSAVNAAASELRSIIERVERLEEEKAAIANDVKDVLGEAKGRGYDTKAIKTIIRLRKKDANERLEEETILQTYMAALGME", "sequence_length": 85, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9e4aa13cce7ff61fbe11bdf79fd5a40480d70895dfda0891883e6a80f9d6095", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6WY25.json", "taxon_id": "439375", "uniprot_accession": "A6WY25", "uniprot_release": "2026_03" } ], "pfam_id": "PF10073", "short_name": "GapR_DNA-bd", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10074", "short_name": "RovC_DNA-bd", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/phage-mu-gp48-pf10076.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10076", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/phage-mu-gp48-pf10076.yaml" } ], "pfam_ids": [ "PF10076" ], "protein_name": "Uncharacterized protein YqcA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKLDEMTAYLPPFLTKLKEMAELLKAEAPEFEKQNNSIFDLTDQLFVTTATWGLERWEKILNVPRESGDTDEIRRLRLISKMSNIPPATYRAIEHALNRFLKNPSAQVRLLPGEYRFKVDIDIDDMQHMSELIETLENMKPAHLAYTLRAALNEPLQIKDTVILNNRRYRKASELKVGYSVTLNNNEVVLV", "sequence_length": 192, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6ae70e5cdad4d78aea415bc3a4c6ea9207dee1856c586bf0265ac414f271f7b2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P45936.json", "taxon_id": "224308", "uniprot_accession": "P45936", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/phage-mu-gp48-pf10076.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10076", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/phage-mu-gp48-pf10076.yaml" } ], "pfam_ids": [ "PF10076" ], "protein_name": "Phage-like element PBSX protein XkdU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKQDDMRAYLPPFLTSLKEMAELLKAEAPEFDKQNDSIFDLTDQLFVPTATWGLSRWEKILNVPRESGDTDEIRRLRLISKMSNIPPITYRAIEQAVNRFLKNPSAQVRLLPGEYRFNVDINVDDLQHMNELIEAIENMKPAHLAYTLRGGLNETLRIKDTVILNHRRYRTASELKVGYSVTLNNNEVVLT", "sequence_length": 192, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1fb1fe4e0a91a7a72e4bb9c06b7d9a722bdd500470011e288120d6ebd40d4d6d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54340.json", "taxon_id": "224308", "uniprot_accession": "P54340", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/phage-mu-gp48-pf10076.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10076", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/phage-mu-gp48-pf10076.yaml" } ], "pfam_ids": [ "PF10076" ], "protein_name": "Uncharacterized protein YmfQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVTNDDYIRLLSALLPPGPVWSASDPAIAGAAPSLTRVHQRADALMRELDPRTTTELINRWERLCGLPDECIPAGTQTLRQRQQRLDAKVNLAGGINEDFYLAQLAALGRPDATITRYDKSTFTCSSACTDAVNAPEWRYYWQVNMPATTNSTWMTCGDPCDSALRIWGDTVVECVLNKLCPSHTYVIFKYPE", "sequence_length": 194, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "476907658b896ca6408f08e97d3be09c8c23f4ed88e5290e14998b8cf52056c6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75982.json", "taxon_id": "83333", "uniprot_accession": "P75982", "uniprot_release": "2026_03" } ], "pfam_id": "PF10076", "short_name": "Phage_Mu_Gp48", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2314-ipr018756.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018756", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2314-ipr018756.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2314-pf10077.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10077", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2314-pf10077.yaml" } ], "pfam_ids": [ "PF10077" ], "protein_name": "Uncharacterized protein YegJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKILLMLSLLFFTTAGFSEVSDTLVTGGYDKQAMSDAIKHARKETDKFIEVMNKKDADTFAVKAPITDHGRTEHFWLTDVTYSNGMFIGVISNDPGIVTNVEYGQEWKIKKEDISDWMYTRGDKIYGGYTIDPLLVTYPKEEADELRAKLVR", "sequence_length": 153, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "19fbefbd469f76a75944c0776fb704896864f086b6862d1a39c75609468d3b85", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76394.json", "taxon_id": "83333", "uniprot_accession": "P76394", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2314-pf10077.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10077", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2314-pf10077.yaml" } ], "pfam_ids": [ "PF10077", "PF12796" ], "protein_name": "Putative ankyrin repeat protein NMB1133/NMB1171", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMGDSVIYYVEQADEPVNRADERARKTFKYFWRELFWERRRIISALDFAMVKVPFFQDGEDGEICEHMWIDDIYFDGLYIYGVLNNEPGELTNVEQGESVCVPVDDISDWMFVCNGIPYGGFTIQAMRGQMTEEERTEHDAAWGIDFGDPGQILLVYEEKEHPENLEEHPMCRNCIDDFRQQLSQNSDYLREQDEDGYTPLHHEAIAGNALMVQAMLEYGANPASTTSEGYTALDFACLTGWQNVADLLEPRH", "sequence_length": 253, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4734e9ab6107e5201b9e3e39a62f75c0f42dc8dea3f19e2b869f8a2df70b5594", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JRZ6.json", "taxon_id": "122586", "uniprot_accession": "Q9JRZ6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2314-pf10077.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10077", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2314-pf10077.yaml" } ], "pfam_ids": [ "PF10077", "PF12796" ], "protein_name": "Putative ankyrin repeat protein NMA1343", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMGDSVIYYVEQADKPVNRAGERARKTFKYFWRELFWERRRIIPALDFAMVKALFFQDGEDGEICEHMWIDDIYFDGLYIYGVLNNEPGELTNVEQGESVCVPVDDISDWMFVCNGIPYGGFTIQAMRGQMTEEERTEHDAAWGIDFGDPGQVLLVYEEKEHPENLEEHPMCRNCIDDFRQQLSQNPDFLHEQDEDGYTPLHHEAIAGNALMVQAMLEYGANPASKTSEGYTALDFARLAGWQNVADLLEPRH", "sequence_length": 253, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0306831f698117e1f0170a02e410093cc0379100b5fcc4fc4f50bd204603795d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JUF2.json", "taxon_id": "122587", "uniprot_accession": "Q9JUF2", "uniprot_release": "2026_03" } ], "pfam_id": "PF10077", "short_name": "DUF2314", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10078", "short_name": "DUF2316", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlorobium phaeovibrioides (strain DSM 265 / 1930)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cc-bshc-pf24850.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24850", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cc-bshc-pf24850.yaml" } ], "pfam_ids": [ "PF10079", "PF24850" ], "protein_name": "Putative cysteine ligase BshC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTFLLDYRHILTPKKGFSQLFRDYTAEGAHRNTLLAECFHLDYQKEADYYRQLGLLSSRRFNRDALVDMLLAQNRSYGCTPLQEQEIEKLRSPRCMAVVTGQQLGLFTGPLYTIYKALTAIVFAERQKSLFPEYDFVPVFWLEGEDHDYDEAATTALFRGNSVTKFRADTTLREQDQMTATTIFDSSIQETLNGFLEALPESDFREEIAALLKGCYRPGATVEHAFASTLMRLMHKQPLILLSSFDPAFKQLSAEIFAKEIDTAPATSYNVVAQSSKLEQLGYGAQTKPRAVNLFSLNHLGQRERIEKHSGETFTIASGRQQFSKHQMLEAAQDHPERFSPNVVLRPIVQDFVLPTFAYIAGPGEISYLAQYRKNYEHFGITMPFIVPRGSFTLVEPKISRIMDRMLQVTGRPGFSRQQIYHAVFSELEAMKTKVVAMAENRTIEPVFEQAKQEIQNALDALGPVLSKIDPTLEGMLAASKAQAGKIVEGIEQKTWKAGRRKHDELLDQIQRAETALFPEGMPQERLINVFYYLNKYGMSLIDTLKNQLQGHATESHIIVEL", "sequence_length": 563, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5afc9d4b33b9dcf9e6a9434caeb53319f41bbe3106e5fdfa2d6971300760ce58", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4SD82.json", "taxon_id": "290318", "uniprot_accession": "A4SD82", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cc-bshc-pf24850.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24850", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cc-bshc-pf24850.yaml" } ], "pfam_ids": [ "PF10079", "PF24850" ], "protein_name": "Putative cysteine ligase BshC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPTDCISYQTSGYFSKLIQDYLDQKSELKTLYNHFPTLENFEKQIAEKASNFDNHNRIALVNTLKKQYQNIEISDSTKQNIELLALENTFTITTGHQLNLFSGPLYFLYKIISTINLTKELKSKYPSYNFVPVYWMATEDHDFEEINYFNFKGKKFRWNKESNGPVGRLSTEGLAEFLDIYSLELGSSTNANTLKKLFEDTYLKHDNLADATRFLANSLFANYGLVIIDADDADLKRAFIPYAKEELEKQTSYKAVQETIEQLKEYTVQVNPREINLFYIEDNLRERIIFEEDKYFVNNTKISFSKDQILSELENHPEKFSPNVIMRPLYQEIILPNLCYIGGGGEIAYWLELKSFFDAVNITFPMILVRNSVLLATEKQAKKADQLNLSWKDLFTKQENLVNAITHKISAFPIDLTPQKEILKTQFQYLYELAAQTDKSFSGAVKAQEVKQTKGLENLEKRLLKAQKRNLSDQLQRVIDLQCELFPNNSLQERQSNFSEFYLEKGEQLVPLLLQKLKPLEMNFNIITI", "sequence_length": 529, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60856ea076e285e8bd17da31f3d3ae8b359b3ac78541fae9e81903ee7c6da703", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5F9Z4.json", "taxon_id": "376686", "uniprot_accession": "A5F9Z4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/6-ec6------.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:6.-.-.-", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/enzymatic_activity/ec/6-ec6------.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/bacillithiol-biosynthesis-cysteine-adding-enzyme-bshc-tigr03998.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR03998", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/bacillithiol-biosynthesis-cysteine-adding-enzyme-bshc-tigr03998.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bacillithiol-biosynthesis-bshc-c-terminal-coiled-coil-domain-ipr055399.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055399", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bacillithiol-biosynthesis-bshc-c-terminal-coiled-coil-domain-ipr055399.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bacillithiol-biosynthesis-bshc-n-terminal-rossmann-like-domain-ipr055398.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bacillithiol-biosynthesis-bshc-n-terminal-rossmann-like-domain-ipr055398.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cc-bshc-pf24850.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24850", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cc-bshc-pf24850.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rossmann-like-bshc-pf10079.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10079", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rossmann-like-bshc-pf10079.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P55342", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10079", "PF24850" ], "protein_name": "Putative cysteine ligase BshC", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "68bfc7fb8f1a3011a7c74ebc056452de792821a158f7cf5be7e94e104b45c388", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQLTELSIKNQNVFVQHYIDGKEEMSSFFDYSIHHKDMWRERLEDLSSRFFAREELAAYLTSYHNKFGSSAMQSAIEKLKDPSSAAVVGGQQAGLLTGPLYTIHKIISIIVLAKQQEKELQVPVIPIFWVAGEDHDLDEINFVHTSEENGPVKKKLPQSYWKKSSAASTSLDQEKCAAWIDDVFAAFEETDHTNTLLDNVKRCLRESVTFTDFFELLIADLFQEEGLVLLNSGDPGIKKLETAMFQKILRENDELARAVSDQQAFMRQAGYKPIIESGKEQANLFYEYEDERFLIEKDNGRFVIKELDLGWTRDELHTHMEEHPERFSNNVVTRPLMQEFLIPTLAFIAGPGEINYWGELKQAFAVMGFKMPPVMPRLNITILERHIEKKLAERNISLQDAIERGTENQRETYFERQIPEEFTAVMDQAKSQIEAIHKTVRQEALKVDQSLEPLLLKNAAFIQDQLQFLERTVMKRIEEKEGYVLKDYERIQNSIKPLLAPQERIWNIMYYLNRYGPKFFTTFKNLPFSFQNQHQVVKL", "sequence_length": 539, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "68bfc7fb8f1a3011a7c74ebc056452de792821a158f7cf5be7e94e104b45c388", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P55342.json", "taxon_id": "224308", "uniprot_accession": "P55342", "uniprot_release": "2026_03" } ], "pfam_id": "PF10079", "short_name": "Rossmann-like_BshC", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10080", "short_name": "FtrD-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10081", "short_name": "Abhydrolase_9", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10082", "short_name": "BBP2_2", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10083", "short_name": "DUF2321", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10084", "short_name": "DUF2322", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yhfc-pf10086.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10086", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yhfc-pf10086.yaml" } ], "pfam_ids": [ "PF10086" ], "protein_name": "Uncharacterized membrane protein YhfC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSQEAVVFLALSGAIAFLLPIGLIVWFKRKYGASLKVFFIGALTFFVFAQLLEGGVHVYVLQVNEMTKEAMQHPLWYGIYGCLMAGIFEECGRYLMMRFFMKRHHTWADGLAFGAGHGGLEAILITGLSSISLIVYAFAINSGTFEQLLVNGDVKQALLPIQEQLLHTPSYEWMLGGIERISAIAVQIGLSLLVLYAVKNRRPLFLLYSILLHALFNVPAVLYQRGIIEHAAAVEIIVALIAALSVYWIVKAKRVFQ", "sequence_length": 258, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "edaf942b5fc930b352508ea158f07a868d9be26e1cc1147c727da5a267c1eb6e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O07601.json", "taxon_id": "224308", "uniprot_accession": "O07601", "uniprot_release": "2026_03" } ], "pfam_id": "PF10086", "short_name": "YhfC", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus cereus (strain AH820)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2325-pf10087.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2325-pf10087.yaml" } ], "pfam_ids": [ "PF10087" ], "protein_name": "UPF0751 protein BCAH820_B0138", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTILVLGGSNGRTLEKLAKKRDCQVIFHDGKNHGGVKKTFRSVIKKCDVIVVQKGACGHVSIDVAKEYAKKYDVPLLFNQGFGGTGALEIGLKHLQAA", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "50a8b69e581f0211171b724be16091e5ab25d844c26d73a959e3c6e1c64d0305", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B7JTN6.json", "taxon_id": "405535", "uniprot_accession": "B7JTN6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Desulfitobacterium hafniense (strain DSM 10664 / DCB-2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2325-pf10087.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2325-pf10087.yaml" } ], "pfam_ids": [ "PF10087" ], "protein_name": "UPF0751 protein Dhaf_4256", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLAIIGGYNFERHSKSMGKLKNIELRFHDGVPKKNNKKVLENLIKDTDCVIIVQMVCSHSSMWDAKDVARKYNKKIYYSQAKGLASVLTMIEKEHGIRTA", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2e631a9a294206759d1960022229f92c88665af4bc6674cb5114e7e5bacfd525", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B8FUJ2.json", "taxon_id": "272564", "uniprot_accession": "B8FUJ2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus anthracis (strain A0248)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2325-pf10087.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2325-pf10087.yaml" } ], "pfam_ids": [ "PF10087" ], "protein_name": "UPF0751 protein BAA_A0112", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTILVLGGSNGRTLEKLAKKRDCQVIFHDGKNHGGVKKTFRSVIKKCDVIVIQKGACGHVSIDVAKEYAKKYDVPLLFNQGFGGTGALEMGLKHLKAA", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8d03432631bc65a3b0047ef58b426b9d95f3381bb04128c1b798a7af00b16b4b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/C3PDZ9.json", "taxon_id": "592021", "uniprot_accession": "C3PDZ9", "uniprot_release": "2026_03" } ], "pfam_id": "PF10087", "short_name": "DUF2325", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2326-ipr018760.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018760", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2326-ipr018760.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2326-pf10088.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10088", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2326-pf10088.yaml" } ], "pfam_ids": [ "PF10088" ], "protein_name": "Uncharacterized protein YydD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIVMIIKNLFVCNSQEILKEYKFNAVGVNIILGEKREDHEETNGVGKSTMIECISFLLGKTISNFYTTNEILLNKNVFIVLNVEIDGNQVFLARSFNSPKHGYTLHDTSLTFNLEEWKKVSISVYKKFIEKEILKGEKEDITFAALREYIIRDEKTGFNDIVLPNRGGLKQYKLLNYLFTLPTHTEKNIKVFRDKIEKLNSEIKLIESMNINIGDLKVKEDELINEIEDYNRVIYQTKTANKYNNDTNRYSEIKSELNKIQNEIFENEHICKQYQRNIDDLNKKVTKIKELENIEKFYEDIVGFFPEEVKQNYNKVQEFYNFMVESRGSYFKDKIVKIQADLKKLNIKKQGLTEQLESSARILKSNNFIEDISIVMEEQRRKEIELAEVRLRISDYDKKNHIFDKINELQHEILRVNSMYYDEFQSYSAIVSELKKLFNNLMDVTYNQHGFLDFEYDNRISNAKQSTTGRIKISCSIPDERSHGRLHMKINIFDLTWFLYRCINKCSLNILIHDGSYSNPDPHVKGTLLKHINSSLLENRIGQYFVTINKNELLLDDLQELESKGMIVAKLDRNNEDKNRFFGFRF", "sequence_length": 586, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "71fb98e9d9160772e67b0eeddf03d41dd3379189d04bd89ef72325f8f034f0de", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q45598.json", "taxon_id": "224308", "uniprot_accession": "Q45598", "uniprot_release": "2026_03" } ], "pfam_id": "PF10088", "short_name": "DUF2326", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Brucella abortus (strain 2308)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hptransfase-pf10090.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hptransfase-pf10090.yaml" } ], "pfam_ids": [ "PF10090" ], "protein_name": "Protein phosphotransferase ChpT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASARLQFARIAFGAAGSAGVQIDTGDAQNVATEYFRNEKPEFTWEGARVLLPKNKVKLLLNMLLIGNGAIPRGGSLAVRLEGSDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQPYYTLLLAEEAGMKISIHATAEDIVFSAE", "sequence_length": 209, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ad88e2f6adafa6d5dcd2bc11b783b6924245b04e2b2eb91799e1d53c3e147e6e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2YQA5.json", "taxon_id": "359391", "uniprot_accession": "Q2YQA5", "uniprot_release": "2026_03" } ], "pfam_id": "PF10090", "short_name": "HPTransfase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/glycoamylase-pf10091.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10091", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/glycoamylase-pf10091.yaml" } ], "pfam_ids": [ "PF10091", "PF21582" ], "protein_name": "Exo beta-1,2-glucooligosaccharide sophorohydrolase (non-reducing end)", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKHIALLTTLLLSASLQAVEKPYDYVFFENSLMKGDYFYSQAKYTSPSWIKNARHHLPVAGSVAFTPGNSLELTYVSAPGGDWYSEIQYCPVRGNDFFREPSTLSMQVRLRESMNAAALPNIAIRYADSTYTQYLNLRNYLKDTRPGVWHPVSIPLEDFGLNAVNDTNIKKLAAVALRPGTADGNEYTIYLDDIELLPASLPSVSALNAPVLQEAKAYERHIDIKWIPQSKEDIKYYRIYRSFDGITYQPVAVRRPWMNRYTDFLGEVGKKAYYKVTAVDYALNESNDSQTVSATTYPMTDEQLLDMVQEANFRYYWEGAEPNSGLARENIPGRNDMIATGASGFGIMAIVAGIERGFITREEGVQRFLKITSFLEKADKFHGAVSHFIDGTTGKTVAFFGPKDNGGDLVETSFLFQGLLTARQYFNQENDKEKQIRKSIDNLWKNVEWSWYKQFKDSPYLYWHWSPDQAWVINHKLIGWNETMITYMLAIMGPKYGISPEMYYSGWASQEEYAQEYRADWGRVEDGKMYTNGNTYYGENLKVGVSNGGPLFFIHYSYLGLDPHKFTDKYTNYFENNQKMAKINQRYCIENQGGYVGYGEDCWGLTASDFAWNYQAQEPMPHRDNGTMAPTGALASFPYTPDASMKALRNYYRNHGSFLWGEYGFRDAFNLTVNWVSPLFMGLNQAPVTVMIENYRTNLLWNLFMSHPDVQKGIQKIQSIK", "sequence_length": 721, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ba0e760d8d9c70fcfce5a44f1f182a909153e9f8a30bcb9d4a899302d49698a3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6LGF6.json", "taxon_id": "435591", "uniprot_accession": "A6LGF6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhizobium meliloti (strain 1021)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/glycoamylase-pf10091.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10091", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/glycoamylase-pf10091.yaml" } ], "pfam_ids": [ "PF06165", "PF10091", "PF17167" ], "protein_name": "Cyclic beta-(1,2)-glucan synthase NdvB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQNTTQSNLPREPEAKQIDYNDSIRSTYFSIDDLRACGASLAEKGTSALPGFFPFEFRARHRENEKEILRVYRATAADVEAGASITPAAEWLLDNHHVVEEAIQEVRRDFPRRFYRQLPTLSVSGTVIPRTMALAWLYVAHTHSTVTRESITAMVEGFQEHETLKIGELWALPSILRFVLIENLRRIAIRVERSRGMRRKANEVADQLIRLNDPEGCRTLLVESEALAADNTFIAQLLYRMRDGSQSSGAVIAWIEERLERRGTDVEEALVAEQNRLSSGNATMSNIIRSLREIDDTDWAVWFESVSKIDATLREGSDYAALDFGSRNTYRDTIEKLARRSGHSEHEVTEIAIEMVEEAKAAAAVEAPLQEPNVGSFLVGKQRLALEKRIGYSPSIFQHLIRSVRKLDWFAIAGPNILLTILAMIVVYAFVSPMDIPSGAKLIMLLLFALPASEGAMGLFNTVFTLFAKPSRLVGYEFLDGIPEDARTLVVVPCLIAKRDHVDELVRNLEVHYLANPRGEIYFALLSDWADSKSEEAPADTDVLEYAKREIASLSARYAYDGKTRFFLLHRRRLYNEAEGVWMGWERKRGKLHELNLLLRGDRDTSFLQGANMVPEGVQYVMTLDSDTRLMRDAVTKLVGKLYHPINRPVVNPRTQEVVTGYSLLQPRVTPSLTTGSEASAFQRIFTINRGIDPYVFTVSDVYQDIAGEGSFTGKGLYHVDAFEAALKSRIEENAVLSHDLLEGSYARCALVTDIELVEDFPIRYEVEMSRQHRWARGDWQLLPYIFNPKNGLSMLGRWKMYDNLRRSLIPVAWLAASVMGWYYMEPTPALIWQLVLIFSLFVAPTLSLISGIMPRRNDIVARAHLHTVLSDIRAANAQVALRIVFIAHNAAMMADAIVRSLYRTFVSRKLMLEWRTAAQVQSAGHGSIGDYFRAMWTAPALALVSLALAAISDTGLPFIGLPFALIWAASPAVAWFVSQSAETEDQLVVSEEAIEEMRKIARRTWRYFEAFVTAEQNFLPPDNFQETPQPVLAERTSPTNIGVYLLSVMSARSFGWIGFEETITRLEQTIATIDRMPKYRGHLFNWYRTRGLEPMEPRYVSSVDSGNLAGHLIAVSSMCREWAEAPSAHVQGNLDGIGDVAAILKEALNELPDDRKTVRPLRRLVEERIAGFQNALAAVKRERELASIRVINLAVLARDMHKLTVNLDHEVRTVQSGEVATWAGSLVAACEAHIADGVFDLGAIEALRQRLLVLKERARDIAFSMDFSFLFRPERRLLSIGYRVNANELDEACYDLLASEARLTSLFAIAKGDLPTEHWYKLGRPIVPIGARGALVSWSGSMFEYLMPPLVMQERQGGILNQTNNLVVQEQINHGRRLGTPWGISEAAFNARDHELTYQYTNFGVPTLGLKRGLGQNAVIAPYASILACMYDPKSALANLARLREVGALGAYGYHDAVDFTPTRVPEGQKCAVVRNYYAHHHGMSVAAVANVVFNGQLREWFHADPVIEAAELLLQEKAPRDIPVMAAKREPEALGKGQADLLRPEVRVVEDPINQDRETVLLSNGHYSVMLTATGAGYARWNGQSVTRWTPDPVEDRTGTFIFLRDTVTGDWWSATAEPRRAPGEKTVTRFGDDKAEFVKTVGDLTSEVECIVATEHDAEGRRVILLNTGTEDRFIEVTSYAEPVLAMDDADSSHPTFSKMFLRTEISRHGDVIWVSRNKRSPGDPDIEVAHLVTDNAGSERHTQAETDRRRFLGQGRTLAEAAAFDPGATLSGTDGFTLDPIVSLRRVVRVPAGKKVSVIFWTIAAPDREGVDRAIDRYRHPETFNHELIHAWTRSQVQMRHVGITSKEAASFQMLGRYLVYPDMHLRADAETVKTGLASQSALWPLAISGDFPIFCLRINDDGDLGIAREALRAQEYLRARGITADLVVVNERASSYAQDLQHTLDSMCENLRLRGLSDGPRQHIFAVRRDLMEPETWSTLISASRAVFHARNGTISDQIARATSLYSKSSEKKEEGAEMLLPVIREADARTAVELDGGDLDFWNGFGGFAEDGREYAVRLRGGEATPQPWINVISNEQFGFHVSAEGAAFSWSRNSRDYQLTPWTNDAVVNRPGEAIFVRDMASGAVLTPYAALSRRKSALFETRHGLGYSRFLSTQDELEIEAMHTVHRTLPAKLVRLTIRNRSSAARKLRVYGYAEWVLGNNRSRTAPFVLSEWDESAKTLVATNPYSIDYPGRCAFFASDGDIAGYTASRREFLGRAGGILAPQAVISGAELTGSTDVDGDACAALATDITVEAGVERQVTFFLGDADNPDQVRAVLEELRADSFGAALEAAKAFWGDFTGVVKVETPDRAFNHMINHWLPYQALGCRIMARSAFYQASGAFGFRDQLQDTLAFLIHRPALARAQILNAAARQFVEGDVQHWWLPGTDAGVRTMISDDVVWLAHAVAHYCAVTGEEDILKEKVPFITGPALEEGQHDSFYKPDVADEVGDVYEHCARALDLAIHRTGANGLPLILGGDWNDGMNRVGEAGEGTSVWLGWFLAGTLRAFLPYARARKDKPRVALWERHLEALKDALEQAGWDGDYYRRGYYDDDTPLGSAENGECRIDSIAQSWSTLSGEGDKERSLRAMDAVMAELVDPEKRIVRLFTPPLETTKQDPGYIKAYPPGVRENGGQYTHAATWVVLAFAAQERAEEAWRTFRMLNPVSHALSQVDAEHYRVEPYVVAADIYGEGALAGRGGWTWYTGSAGWLYRAGVEGILGIRKRGDKLLIRPVLPSEWPGYSAEVRVNGTTHRISVSRDSKSGEPVVSVNNSVTKNAHEGVLL", "sequence_length": 2832, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8fa6d9f3438f0d6dae8a26db885486585e3eee174831c189770fee9d78dbfe0f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P20471.json", "taxon_id": "266834", "uniprot_accession": "P20471", "uniprot_release": "2026_03" } ], "pfam_id": "PF10091", "short_name": "Glycoamylase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10092", "short_name": "DUF2330", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Neisseria meningitidis serogroup B / serotype 15 (strain H44/76)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/earp-pf10093.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10093", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/earp-pf10093.yaml" } ], "pfam_ids": [ "PF10093" ], "protein_name": "Protein-arginine rhamnosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTPPFVCWIFCKVIDNFGDIGVSWRLARVLHRELGWQVHLWTDDVSALRALCPDLPDVPCVHQDIHVRTWHSDAADIDTAPVPDVVIETFACDLPENVLHIIRRHKPLWLNWEYLSAEESNERLHLMPSPQEGVQKYFWFMGFSEKSGGLIRERDYCEAVRFDTEALRERLMLPEKNASEWLLFGYRSDVWAKWLEMWRQAGSPMTLLLAGTQIIDSLKQSGVIPQDALQNDGDVFQTASVRLVKIPFVPQQDFDQLLHLADCAVIRGEDSFVRAQLAGKPFFWHIYPQDENVHLDKLHAFWDKAHGFYTPETVSAHRRLSDDLNGGEALSATQRLECWQTLQQHQNGWRQGAEDWSRYLFGQPSAPEKLAAFVSKHQKIR", "sequence_length": 382, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e9b4ae3ade75e8f57df0d99216b29c7425796f32b335776b8d1afcee74bac084", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E6MVV9.json", "taxon_id": "909420", "uniprot_accession": "E6MVV9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/earp-pf10093.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10093", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/earp-pf10093.yaml" } ], "pfam_ids": [ "PF10093" ], "protein_name": "Protein-arginine rhamnosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKATWDIFCSVVDNYGDIGVTWRLARQLVAEHGLAVRLWVDDLNAFTPMCPGADATAAQQWQHGVDVRHWPAAWLPVAPADVVIGAFACQLPAAYVEAMRARPQPPLWLNLEYLSAEDWVEGCHGLPSPQPNGLRKVFFFPGFTDKTGGLLREGSLLARRDGFQQSAEARRAFLQGLGVDLVPGALLISLFAYENPQLGNWLDALATADQPCHLLVPQGRVVAGLSQWLGEGPLHVGDVRTRGALTVQVLPFVSQDDFDRLLWSCDFNAVRGEDSFVRAQWAGQPMLWHIYVQDENAHWEKLEAFLAHYRCGLSDDADAALLGLWRAWNMDFDMGQAWRAARQHWPELQQHARLWGARQAAQPDLATALVHFYRNSL", "sequence_length": 377, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1b3d6bf42e0e7f84175a702def01f93a21ba8aa594f5f9a611b50f461a26a8c6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q88LS1.json", "taxon_id": "160488", "uniprot_accession": "Q88LS1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/earp-pf10093.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10093", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/earp-pf10093.yaml" } ], "pfam_ids": [ "PF10093" ], "protein_name": "Protein-arginine rhamnosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASWDIFCSVVDNYGDIGVTWRLARQLAAEHGQAVRLWVDEPQAFARICPRADPVAHVQCLDGVEVRAWGRPWAPVAAADVVIEAFACELPEAHRQAMRERKRPSLWLNLEYLSAEEWIGSCHALPSLQACGLSKYFFFPGFREPSGGLLREAGLLERRRRFQASVSAQDEFLASLGVRRKVGERLISLFAYENPALPGWLEQLRDARQPSLLLVPEGRVLADVADWLRVATLAVGDVHVRDALRVQVLPFMAQDDYDRLLWCCDLNAVRGEDSFVRAQWAGRPLLWHIYRQEEETHLAKLEAFLELYCAGLPADLAENLRTFWLAWNAGGGLAGAWEGLERQLPEWRREAQRWADEQGMRPDLAARLVQFYADWL", "sequence_length": 376, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f464e7819cc7ec9c2d1a31a77895892917ac7d5e04e905361ae49d1ed4c4d7d9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HZZ1.json", "taxon_id": "208964", "uniprot_accession": "Q9HZZ1", "uniprot_release": "2026_03" } ], "pfam_id": "PF10093", "short_name": "EarP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10094", "short_name": "DUF2332", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10095", "short_name": "DUF2333", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/putative-nodb-like-catalytic-domain-of-uncharacterized-proteins-found--cd10923.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd10923", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/putative-nodb-like-catalytic-domain-of-uncharacterized-proteins-found--cd10923.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2334-ipr018763.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018763", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2334-ipr018763.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2334-pf10096.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10096", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2334-pf10096.yaml" } ], "pfam_ids": [ "PF10096" ], "protein_name": "Uncharacterized protein YdaL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLCVMMLLFSAIASFPVSAQAKDQDAGILIIYSTLDGKESSQVKMLDLLAGHFTSHVTVKKDSDVEASDFKGKDHVIYYGQTKRKLSQKLLSLISGVKKPVVAIGYNAGQISQFSGLSLARKENVFQVHSRSEKADVSLESGLNVLSVSGLKGTALYTFKADEGTTHSFIWKTKKGNVYIGLTNLLNDNLIVAKQLREAFGEKAGTTLLYLRLEDISPMSDEKLLLQAGTYLHKRHIPFILAVIPVYLNPETGDKVYLSNQPKMVKVLKKLQSMGGSIIVHGYTHAYRYSETGEGFEFWDAKADQPITSGNAEDPPSILEKEQDFPNEQAYHSYLEPFREKEETYTKQKLTRAIEDLTSSGLYPLAFEAPHYTMSEYGYQIASQYFTSIFGQVQLSSTTWKTSGAPPFVTAPSMLHGMTLYPETIGFVDTSKQNPLGEMEEHISQMIDFEGGVAGGFYHPYLGMKYLPELVDQMERIPDSEWLDLKKTKQTVKTDKVEIHTSGDGTIQVKNGVSPIYEFFDHHRQTPLEKALWILSAVVLLFVIMFVSYTFYLRATLKKRIFKERRSLG", "sequence_length": 569, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1e4f5002eab621fb3eaee828268c0c2e3ecdb8a7a1f5ae82bd8a186d60557115", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31487.json", "taxon_id": "224308", "uniprot_accession": "O31487", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2334-ipr018763.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018763", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2334-ipr018763.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2334-pf10096.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10096", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2334-pf10096.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/glycoside-hydrolase-deacetylase-beta-alpha-barrel-ipr011330.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011330", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/glycoside-hydrolase-deacetylase-beta-alpha-barrel-ipr011330.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/glycoside-hydrolase-deacetylase-3-20-20-370.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.20.20.370", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/glycoside-hydrolase-deacetylase-3-20-20-370.yaml" } ], "pfam_ids": [ "PF10096" ], "protein_name": "Uncharacterized protein MJ0505", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKFKYLLFLVVFAVFFLTFAFFDNSSKSHQDDDEQKPIILIHDVSPVYFKELKEIVKIIDKYHYQNRSYLFLIVNHANKYNLKNYPEFVDYLHKLEKEGYHIEFHAYNHIDDEFNCNKTVAEEKLNKSFKILEECGFNPKKIKYFIPPRYKLSEDAEKLFLGRNITIILENKMITEKDGKIVEISITNREYTWYLPKPLVKVAEKIATTDYKLSIKENRKFFLSIHPKAVNYGSGLEFLDYFLNETSKN", "sequence_length": 250, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "65e81de1927da12644fc56bfb68bf902f4cf3ebe4dcd3d7ebfe3e34e6cd02352", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q57928.json", "taxon_id": "243232", "uniprot_accession": "Q57928", "uniprot_release": "2026_03" } ], "pfam_id": "PF10096", "short_name": "DUF2334", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2335-pf10097.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10097", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2335-pf10097.yaml" } ], "pfam_ids": [ "PF10097" ], "protein_name": "Uncharacterized protein RP532", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKETKRFFNKNNRLNKGYAKTFSINEPDNNFYRKKFEHILPPVDLISEYESIYPGTLQELMHMAQKEQAHKHAIDLKNLKIQERIAKLTRICLLIFGIGLVVLIFLKLLK", "sequence_length": 110, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "204969f36e4192b74bbc8824f46e110f5dc4df6c4e6e4f850a3a732e50c584db", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZD18.json", "taxon_id": "272947", "uniprot_accession": "Q9ZD18", "uniprot_release": "2026_03" } ], "pfam_id": "PF10097", "short_name": "DUF2335", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10098", "short_name": "DUF2336", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10099", "short_name": "RskA_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10100", "short_name": "Staph_opine_DH", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10101", "short_name": "DUF2339", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2341-ipr018765.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018765", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2341-ipr018765.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2341-pf10102.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10102", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2341-pf10102.yaml" } ], "pfam_ids": [ "PF10102" ], "protein_name": "Uncharacterized protein MJ1470", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFRKIVSKRGYIFTYEAIVIAFIFLSVFYIGYMVYSHNMLTALEEKKDTEKFHKALLLKDYFLRNNKFPGKFYNKTYLDNFTNELDIKEKTFDLFNNFSEYKGLIRFIIYPNIYDEELDNISDEICANDGLQAITYNFSSNTFKIYSNVNTTFNNANLSISGMDLIYFKENVYIPKITGMKYGDSINLYGCNGDHIYFKVNSEIISASARVVTNNGNPFITWQNWRYATPILIINNLNQNLNDYDVKIVFDSQSYINSGEMRTDCGDVRFVDEDGNPLSYWIEPNTIDTPHTVAWVKVNLAPNEHKLIYMLYGNPTATTTANGDNTFPLFFDDFSKGNLDNTKWTYNFNNPLFVNDTYPNGINFTYLSLDYTYYNNHNYIIYDINNTHISSISTYYPNTSVRFHANFHKKYEEWGGFYININGNDYNREVITNYHWGGEWLRAESSVLNQDYDSYIILQDPDLYDNWHTYEIQRDGGSSVNFIIDDAIYKTIYSNIYTGDLPISFYARKYDYSTKYGYYPVPQDEQNGNISIDWVFVRKYVEPEPTVTLLSSDVIFTVNGYIYKKPLKSVFDNIDITPNLNVGINEIRILSSPLPVEFLIKTNENTDFYYLTLSPNNVTIVVKP", "sequence_length": 624, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f2f84aa706fccd13d1c8f7eb9d08e70d1099895b7bfe512507af90e499a63991", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58865.json", "taxon_id": "243232", "uniprot_accession": "Q58865", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2341-ipr018765.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018765", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2341-ipr018765.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2341-pf10102.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10102", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2341-pf10102.yaml" } ], "pfam_ids": [ "PF10102" ], "protein_name": "Uncharacterized protein MJ1472", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYFSQNAIILVMLMFVISAVFYATIDYKTKEVEDEIKIKEVSLYEKNLINTIDRNIDKIVEDAFVNASYKIMKERKFFTASSEAVAYITSYIKNETKESLNNVNYGYSNISYNISSVKISPTYDPLVVHLYCEIDIKYSKKLNNGELIALKPIVINRDIKLSRIPDPYVYLNKFYYTWGYEKKINIYNFPNDNYNRTFCIILNSSNFNYSEMHNPQSPTELRVIGWDSVSNKIILLPYWVQTWREGNNDVSVIWVRANKNEIYNYNNGQGYIYILYNSTTPVDRQDPEHTFIFFDDFNYFNPDKWDSVGYFIINNSKITVIAGAGSSVYTKQTYGTRYELIFRANFTPSHAQTIGFFTQLSDNDGVGWDMYDWTGNNPELYMRVGYSGSDIGDYVPNSNKYLNKFYIYDLKRISTTDLNFTIFNDTLDIEYSNSFTNGNKGNNYPISITALINLNTNVTVDWIFLKDINDITTTVPPIGVDEYPNLDYKEEKPKTFTGTIYYGEPGKYILVYNSTYSIIGLYTNKTDYWLYPNMPGYKPLIEEN", "sequence_length": 544, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "10f831874b0cabfef2db13989e62899b6ae4741c07e0d92baca7e06e82de49bd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q58867.json", "taxon_id": "243232", "uniprot_accession": "Q58867", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sulfolobus islandicus rod-shaped virus 1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2341-pf10102.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10102", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2341-pf10102.yaml" } ], "pfam_ids": [ "PF10102" ], "protein_name": "Uncharacterized protein 562", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLPYKVNFKLPLEYLSLQDWNNFVQNLIFINQYGTAKLLQYYKNGSFQNLKDVFAKYLYVAQLKVNGYNVLHNLSEPLAYTFGNVFQELANKPSINLPEINVPVSSINYKLPPVEKQIEALIPNLISKISIPINIAGTQFTFSGNSNLAQLTSQYLQSVYLQTWRSITLQNLGNSSVQINNSIYLMPKQCLKITVSNPQEVQISAQSSTLLSELIEFNVIPITAYTITITNSQPDPTPSPFQQLLILNLSNIISSPSQLLNLQFCLDSQCKTPLYSWIESYNSNLSNVYIWINLPISIPANSSITIYMFVRNSIQYPYTGMRPDLTSTYAQYDNGKNVFLIYFNGNEPLSNFNTEGNTIQQISTIGPLGNTINAIYLSGYSNNVGFVYTGKSVPNQPVIVEASAKDMDNQTGGLGADNGQAGIADSTNTAIINAIGVTMGNNSDYFSQDFYINGSETRGYNLQGSAVSQWVYAWVVYQGSSASSWSGCIAPQLYSSNGGYCGTVNNNPLSSSTQLYLAVIGGVGYYDYWQTAWNFMRMRTYPPNGVMPSNTNPQLTTIYVA", "sequence_length": 562, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a95083d94b928c62cf063f0fcd975121fd25dd6d216c977bf08496810e1dc3bb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8QL25.json", "taxon_id": "157898", "uniprot_accession": "Q8QL25", "uniprot_release": "2026_03" } ], "pfam_id": "PF10102", "short_name": "DUF2341", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10103", "short_name": "Zincin_2", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/brl1-brr6-domain-ipr018767.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018767", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/brl1-brr6-domain-ipr018767.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/brr6-like-c-c-pf10104.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10104", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/brr6-like-c-c-pf10104.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P38770", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10104" ], "protein_name": "Nucleus export protein BRL1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ceaeb2122837178fe425d85d817133a0672e06bfa422e56285ea20a14bc6d895", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MESFENLSIRDSFTSGMEHVDEELGGLSDLSISKQGPTLSPQLINRFMPHFPSSPSPLRNTLDFSAAKADEEEDDRMEIDEVDDTSFEEEYNNEPIETHTEATENAVVEEIEATPEERQKQEKNESQDQSVEEVENIVSPHRSTVIKALLSPTDLGVAAATKVEGVVPLPPSANQDDNESSNNNAEGEDIIRNEEVEDEIKSSLGNHKSSQYANAFDSEIIKRELRSRSKYQPIQVSFNTHNYFYSDKDGIKTYSLTKPNHNKIDEFYDQNEAFKLPKPWSPNSHPASRASYALMSYLQLFLNAITTVVIFSFILSFIIALQKDLKSTWEQRKHELQYESRICQEQYLTNRCNQTPGLPALGEQCAIWKQCMDRNNDIFFRARSTLSAKLFGDIINSFIDPLNWKTLFVIFCGVITWCFSSNFLLGFVRAKSYYGNGIKTYPLPSSPKSPTSEETHSSMTASGEDSHLLKQ", "sequence_length": 471, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ceaeb2122837178fe425d85d817133a0672e06bfa422e56285ea20a14bc6d895", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38770.json", "taxon_id": "559292", "uniprot_accession": "P38770", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/brl1-brr6-domain-ipr018767.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018767", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/brl1-brr6-domain-ipr018767.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/brr6-like-c-c-pf10104.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10104", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/brr6-like-c-c-pf10104.yaml" } ], "pfam_ids": [ "PF10104" ], "protein_name": "Nucleus export protein BRR6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELRSFSRQPDGILANPRLGREEVLEGEHPQDARLARQSIWLSPSLIAEYIQLFFNFIIGTIGLSLAIKFILMIRNDVNLKLEHNVREELDKIATCKSRYFENQCEPHMRVPALEVRCNEWSKCMNKEIVSGSDYQWAKAWARTLAEVINAFFEAFSIRSFLFILISIIGIIFVTNTSFGSYRVYLNNKDTKSVRHA", "sequence_length": 197, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "379d243fc16720a2e5c9047e9455c8552db08b97b7ceb94c4e208c6b0515b8cf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53062.json", "taxon_id": "559292", "uniprot_accession": "P53062", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/brr6-like-c-c-pf10104.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10104", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/brr6-like-c-c-pf10104.yaml" } ], "pfam_ids": [ "PF10104" ], "protein_name": "Nucleus export protein brr6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEMYVEDVPMPDIGPDSVLNTPIRPKYEILKSKKKTQNENDPEPMDISMSPDEKNLKKSTVRRKLRKSKPNSSSNQVSSRTRALTKRSNSSNAIIKANNQDSVYVSDWTNVHRDIPIVVSGYLQLMFNACVASIFLYFLFKIVFGIQNDVRNRVEYHKILQEEQAADCQREYLSINCDSPGPAIFEVCQKLKQCKMESSNNVGSTKLAALVFAEIIDAFISHISYKTMVFSLILVFGSLLTSNYAFGLYRARHSQNIHDYAANAIPAMIPSSRFLPSNLSDISNRNLIEAASQEEEI", "sequence_length": 297, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b4f4cbc37d9d8ef039f661a072e1adb9a87aef254515c49ce02b348dec6fe6a3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UT30.json", "taxon_id": "284812", "uniprot_accession": "Q9UT30", "uniprot_release": "2026_03" } ], "pfam_id": "PF10104", "short_name": "Brr6_like_C_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10105", "short_name": "DUF2344", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2345-pf10106.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10106", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2345-pf10106.yaml" } ], "pfam_ids": [ "PF04717", "PF05954", "PF10106", "PF13296" ], "protein_name": "Type VI secretion system spike protein VgrG2a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRQRDLKFTFVVGEGKLAFDVVEFELEEALCEPFRLNLKLASDKNAIDFRQVLDQPGTFTLWQDGRPARYVHGIVSHFTQGSSGFRRTRYELLLEPQLARLELCCNWRIFQEKSVPEILQALLKEHRVLDYEQRIYHEHLPREYCVQAGDSDHYLHDRLAFEEGLVYYFRFDEHRHTLVCSDRLYVQERIAGGPVLFSAQPEGDNPQPVLHSFRYSENVRTARQTQRDYSFKRPTYDQEHHLAGEALEHQGSSYERYDYPGRYKRSGAGRPFSESRLRGHRRDARVASVSGDDPRLIPGHAFALEGHPRADFNAWWRPVRVVHRGTQYAGQEEESADAPLGVSYDLRAELVPEDVEWRPAPLPRPRIDGPQIATVVGPAGEEIHCDEWGRVKVQFPWDREGRHDEFSTCWIRVAQNWAGADWGHMAIPRIGQEVIVDYLDGDCDQPIVTGRTYRATNRPPYALPDHKILSTIKSKEYKGSRANELRIDDTTAQISAALMSDHGASALHLGYLTHPRPEGGKPRGEGFELRTDEHGAVRAAKGLLLSTEEQLRAGAGHLDRGVVVQVLEAALKLARELGDYAGEHQGVGHDAAPQQTLQEAVRDLGHGANDESGKSNGGKPAIALSGPAGIAAATPASLTLAAGEHVDSVARQNQQVTAGQKVVINAGSDIGLFAQGGELRQITHQGPMLLQAQKNDIRLEAEQSVEVSASQQHVLVTAKEHITLMCGGAYLTLKGGNIELGMPGNFVVKAAKHSHVGPAHASTSFNAWDSTPFDDRYVLRDEATLEPLPNIAVEVIRGDGGVVKLMTDSQGRLPKQQHLAMDPVQIRILGKGSHNSDTESNT", "sequence_length": 842, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3e47e370ae6bbf1d9b76dd3729dd49830f09dd7c5b9814a1a2d8f935aa050107", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9I3K1.json", "taxon_id": "208964", "uniprot_accession": "Q9I3K1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2345-pf10106.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10106", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2345-pf10106.yaml" } ], "pfam_ids": [ "PF04717", "PF05954", "PF10106", "PF13296" ], "protein_name": "Type VI secretion system spike protein VgrG2b", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRQRDLKFTFVVGEGKLAFDVVEFELEEALCEPFRLNLKLASDKNAIDFKQVLDQPGTFTLWQDGRPARYVHGIVSHFTQGSSGFRRTRYELLLEPQLARLELCCNWRIFQEKSVPEILQALLKEHRVLDYEQRIYHEHLPREYCVQAGDSDHYLHDRLAFEEGLVYYFRFDEHRHTLVCSDRLYVQERIAGGPVLFSAQPEGDNPQPVLHSFRYSENVRTARQTQRDYSFKRPTYDQEHHLAGEALEHQGSSYERYDYPGRYKRSGAGRPFTESRLRGHRRDARVASVSGDDPRLIPGHAFALEGHPRADFNAWWRPVRVVHRGTQYAGQEEESADAPLGVSYDLRAELVPEDVEWRPAPLPRPRIDGPQIATVVGPAGEEIHCDEWGRVKVQFPWDREGRHDEFSTCWIRVAQNWAGADWGHMAIPRIGQEVIVDYLDGDCDQPIVTGRTYRATNRPPYALPDHKILSTIKSKEYKGSRANELRIDDTTAQISAALMSDHGASALHLGYLTHPRPEGGKPRGEGFELRTDEHGAVRAAKGLLLSTEEQLRAGAGHLDRGVVVQVLEAALELARELGDYAGEHQGVGHDAAPQQTLQEAVRDLGHGANDESGKSNGGKPAIALSGPAGIAAATPASLTLAAGEHVDSVARQNQQVTAGQKVVINAGSDIGLFAQGGELRQITHQGPMLLQAQKNDIRLEAKQSVEVSASQQHVLVTAKEHITLMCGGAYLTLKGGNIELGMPGNFVVKAAKHSHVGAASLEAELPQFEVGETQRRFVLKQLDGQTAMPNVPYTITMANGEVIEGVTDAEGATQLLQKDAMNIAKVDMKHTKSPASAVAGIAAAVGAAVAVGKLLGGPDAEAGRALSEGEISLAKGVFGDSIDYSTVRLRDEDYVPWQGKDYVMAPNGHIYFGEELRGVADWSLESLQRQGLFIHEMTHVWQHQHGVNVLLVGAYQQARQFLLGDQYAYRLEPGKTLKDYNIEQQGDIVRDYFLEKNEFGEASANSRFAGVLKNFPTGY", "sequence_length": 1019, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e29b52843dde6ed5c50b74eea51a44ac966ea76dca3f2915b24d993eb90a2425", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9I6M7.json", "taxon_id": "208964", "uniprot_accession": "Q9I6M7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10106", "short_name": "DUF2345", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem214-pf10151.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem214-pf10151.yaml" } ], "pfam_ids": [ "PF10151" ], "protein_name": "Transmembrane protein 214", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATKTAGVGRWEVVKKGRRPGVGAGAGGRGGGRNRRALGEANGVWKYDLTPAIQTTSTLYERGFENIMKRQNKEQVPPPAVEPKKPGNKKQPKKVATPPNQNQKQGRFRSLEEALKALDVADLQKELDKSQSVFSGNPSIWLKDLASYLNYKLQAPLSEPTLSQHTHDYPYSLVSRELRGIIRGLLAKAAGSLELFFDHCLFTMLQELDKTPGESLHGYRICIQAILQDKPKIATANLGKFLELLRSHQSRPAKCLTIMWALGQAGFANLTEGLKVWLGIMLPVLGIKSLSPFAITYLDRLLLMHPNLTKGFGMIGPKDFFPLLDFAYMPNNSLTPSLQEQLCQLYPRLKVLAFGAKPDSTLHTYFPSFLSRATPSCPPEMKKELLSSLTECLTVDPLSASVWRQLYPKHLSQSSLLLEHLLSSWEQIPKKVQKSLQETIQSLKLTNQELLRKGSSNNQDVVTCDMACKGLLQQVQGPRLPWTRLLLLLLVFAVGFLCHDLRSHSSFQASLTGRLLRSSGFLPASQQACAKLYSYSLQGYSWLGETLPLWGSHLLTVVRPSLQLAWAHTNATVSFLSAHCASHLAWFGDSLTSLSQRLQIQLPDSVNQLLRYLRELPLLFHQNVLLPLWHLLLEALAWAQEHCHEACRGEVTWDCMKTQLSEAVHWTWLCLQDITVAFLDWALALISQQ", "sequence_length": 689, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "32cbdc3f5955382b990b086c9032149f96133fe6230c56f4955c5628bf3ae52d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NUQ4.json", "taxon_id": "9606", "uniprot_accession": "Q6NUQ4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem214-pf10151.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem214-pf10151.yaml" } ], "pfam_ids": [ "PF10151" ], "protein_name": "Transmembrane protein 214", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAARSAGSGGWEVVKRGRRPGASSGGRGGGGGSDRRALGEANGVLKYDLSSPIQTTSTLYERGFEKIMKRQNKEQVPPPAAESKKPINKKQPKKVTAVPSQNQKQGPFRRLEDALKALDVAALQKELDKSQSVFTGNPSVWLKDLASYLNYKLQTPRMEPTLSQYPHDYPYSLVSRELRGIIRGLLTKAAGSVELFFDHCLFTMLQELDKTPGESLHGYRICIQAVLQDKPKIVTSNLDKFLELLRSHQSRPAKCLTIMWALGQAGFTNLTEGLKVWLGIMLPVLGIKALSPFAIAYLDRLLLMHPNLTKGFGMIGPKDFFPLLDFAYMPNNSLSPSLQEQLCQLFPRLKVLAFGAKPESSLHTYFPSFLSRATPSCPAAMKKELLASLTQCLTVDPLSTSVWRQLYPKHLSQSSLLLEHLLKSWEHIPKKARKSLQETIQSLKVTNQELLKKGSGGSEHVLTCDTACKGLLQRARGPRPPWARLFLLLLVFAVGFLCHDLRSNSSLQASLTGRLLRSSGLLPVGQQVCARLSSYSLQSYNWLQETLPACGSHLLAVVQPSLQLAWTHIYAIFSFLSAHCASYLACFSDSLAGFFQRVQLPEALQQLFHALKELLLLFCHSVLLPTWHLLLAALAQVQEHCHEACRGDVTWDCIKTQLSRAAQWTWLCLQDVTVAFLDWALTMISQQ", "sequence_length": 687, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bfed369f04a70daf1c1fe38c9502e91ca0bcc92ddec9fff92b43d313724a7193", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BM55.json", "taxon_id": "10090", "uniprot_accession": "Q8BM55", "uniprot_release": "2026_03" } ], "pfam_id": "PF10151", "short_name": "TMEM214", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccdc53-pf10152.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10152", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccdc53-pf10152.yaml" } ], "pfam_ids": [ "PF10152" ], "protein_name": "WASH complex subunit homolog 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNASSRTKPAIDLNKVPPIDHHRTAVTFNCLIMKMTEMLNNFGNKMEDILEKAEQSLDTADRKLRLMESKLAGMSLEDKSTTATPSSAPEIDEIHESNPSSSQIVEETVEEKPEEHTTTVLIKDDPAYSKYFKMLKLGVLEAGVIQKMKSEGVDPSILKRGDEPSRPQAQTSRNYESSGESTASFSDSD", "sequence_length": 189, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5007ba8e3a393ecb0834810d63de375cf88239a42c9134314fc01b736adc6aa6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O01901.json", "taxon_id": "6239", "uniprot_accession": "O01901", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccdc53-pf10152.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10152", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccdc53-pf10152.yaml" } ], "pfam_ids": [ "PF10152" ], "protein_name": "WASH complex subunit 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDATAAITGNVDKTQIPPLNQKRILAFVNHFLVSTCTFLNEFALGCETKFVEMERQLQKTEAALIILEAKLASIPTEHHVATEATEAPAISNQQRNEEASMVDTTEPPTTENPTEPELPPESVGVRACEDQRYRKFFKMVQVGVPAPAVKQKMQSEGLEPRILDTPDLILADGQRE", "sequence_length": 176, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7b2986d4802b3c7d1487b25d2ad400fe1d0b06368b1e7cc146c9fd4187df069f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VLT8.json", "taxon_id": "7227", "uniprot_accession": "Q9VLT8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccdc53-pf10152.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10152", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccdc53-pf10152.yaml" } ], "pfam_ids": [ "PF10152" ], "protein_name": "WASH complex subunit 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDEDGLPLMGSGIDLTKVPAIQQKRTVAFLNQFVVHTVQFLNRFSTVCEEKLADLSLRIQQIETTLNILDAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQQNSTQDSGLQESEVSAENILTVAKDPRYARYLKMVQVGVPVMAIRNKMISEGLDPDLLERPDAPVPDGESEKTVEESSDSESSFSD", "sequence_length": 194, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "94f959c5f3a4281116cd62af11cda19da5d3dec052859c86ed0c5bcfe111440d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y3C0.json", "taxon_id": "9606", "uniprot_accession": "Q9Y3C0", "uniprot_release": "2026_03" } ], "pfam_id": "PF10152", "short_name": "CCDC53", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/efg1-pf10153.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10153", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/efg1-pf10153.yaml" } ], "pfam_ids": [ "PF10153" ], "protein_name": "rRNA-processing protein EFG1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKSVPSRQGSASADIYNSGSAKIKKKIRDIERLLKKDNVPANIRIDNERALKALKVELANKQQDHKTQKIAKKYHMVRFFERKKALRKLKQARKELQNVSETGERKDIKKARKVVRHCEIDVAYVVLFPKAEKYISLYPNHQPEKNPDTENAKKGLEKTESRRRELRKKVEKLVDDKALPFSIDDLLEGKSVDVKHDFESGHNQEIDAPETKIQEEDDFFE", "sequence_length": 222, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "22599ec07bce316cb12f3f14cae45308a6e12ab8ee23b5342c0ea98d76beb0c7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A5DID3.json", "taxon_id": "294746", "uniprot_accession": "A5DID3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Histoplasma mississippiense", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/efg1-pf10153.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10153", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/efg1-pf10153.yaml" } ], "pfam_ids": [ "PF10153" ], "protein_name": "rRNA-processing protein EFG1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASSSFQKQGKRKDMADDSISFETSKRHRGDYRNSREASPIVRDGQDDRRKYIDRREPGKQPSRPQIRDSNTFGGAQPGQDDHAYAAGRSTSKPFRSRDLDLPSANELKNKIRDTKRLLKRGDHLPADVRIEKERALVGYERDLEIVESRKNRAAMIKRYHFVRFLERKAATRRLNKLLKQKKTLTESNPNLDKKELDFVEEQIYVTQVDLNYAIYSPLTEKYISLYPNQRRDKKTPEPDPEDSNIIRNNSGEKPPLWYTVEQSMKDGTLELLRDGKLGIGISGQKTSNNGPIAVLGRKNNETVSGSSVATEGDSKQQGRKKDKEKQHDVKKSKEQEGSKNSGPRRRDVHMDDQNNEDGDDDSDGGFFEE", "sequence_length": 370, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60ce2a4d2e00e998fccd1b4c87bbf64753439b12a9a249b94f9e4f10113031fe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6RBE9.json", "taxon_id": "2059318", "uniprot_accession": "A6RBE9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/nuclear-rna-surveillance-go0071027.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/nuclear-rna-surveillance-go0071027.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/efg1-pf10153.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10153", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/efg1-pf10153.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q3E705", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10153" ], "protein_name": "rRNA-processing protein EFG1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "2715671eeac3ba6bf0b3578b6f4ef15cca59495481e0b87b96d4a68aeb1e967a", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAKLQRKRSKALGSSLEMSQIMDAGTNKIKRRIRDLERLLKKKKDILPSTVIIEKERNLQALRLELQNNELKNKIKANAKKYHMVRFFEKKKALRKYNRLLKKIKESGADDKDLQQKLRATKIELCYVINFPKTEKYIALYPNDTPSTDPKGVELTNLRREQFLKLVAERMDANTLNVSFEEILKGKKLDEDSIGLTLSPDKDHEDGSQVSPTQDRKELDQVVGEDEKDDFFE", "sequence_length": 233, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2715671eeac3ba6bf0b3578b6f4ef15cca59495481e0b87b96d4a68aeb1e967a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3E705.json", "taxon_id": "559292", "uniprot_accession": "Q3E705", "uniprot_release": "2026_03" } ], "pfam_id": "PF10153", "short_name": "Efg1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fy-3-pf10154.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10154", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fy-3-pf10154.yaml" } ], "pfam_ids": [ "PF10154" ], "protein_name": "FERRY endosomal RAB5 effector complex subunit 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKNRERFSSKEREFVYKFQIGSERLELRVPLRFPVDENASHLHGRLMLLHSLPCFIENDLKEALARFIEEESLRDHDSDAEACLEAVKSGEVDLHQLASTWAKAYAETTLEHARPEEPNWDEDFADVYHDLIHSPASETLLNLEHNYFVSISELIGERDVELKKLRERQGIEMEKVMQELGKSLTDQDVNSLAAQHFESQQDLENKWSNELKQSTAIQKQEYQEWVIKLHQDLKNPNNSSLSEEIKVQPSQFRESADAAGRIYEEQRKLEESFTIHLGAQLKTMHNLRLLRADMLDFCKHKRTQGSGVKLHRLQTALSLYSTSLCGLVLLVDNRINSYSGIKRDFATVCQECTDFHFPRIEEQLEVVQQVALYARTQRRSKCKEARDSGNQNGGSDEKSKNAERNYLNILPGEFYITRHSNLSEIHVAFHLCVDDNVKSGNITARDPAIMGLRNILKVCCTHDITTISIPLLLVHDMSEEMTIPWCLRRAELVFKCVKGFMMEMASWDGGISRTVQFLVPQSISEEMFYQLSNMLPQIFRVSSTLTLTSKH", "sequence_length": 552, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "42af5aa84f2cf722a13a7e58f58f487dac1fdeb318af85ec956d6374c9fa8160", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D4A770.json", "taxon_id": "10116", "uniprot_accession": "D4A770", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fy-3-pf10154.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10154", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fy-3-pf10154.yaml" } ], "pfam_ids": [ "PF10154" ], "protein_name": "FERRY endosomal RAB5 effector complex subunit 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKNRERFCNKEREFVYKFQVGRERLELRVPLRFPVEENASHLHGRLMLLHSLPCFIESDLKDALSRFIEEESLRDHDSDAEACLEAVKSGEVDLHQLASAWAKAYAETTLEHARPEEPDWDEDFADVYHDLIHSPASETLLNLEHNYFVSISELIGERDVELKKLRERQGIEMEKVMQELGKSLTDQDVNSLAAQHFESQQDLENKWSNELKQSTAIQKQEYQEWVIKLHQDLKNPNNSSLSEEIKVQPSQFRESADAAGRIYEEQRKLEESFTIHLGAQLKTMHNLRLLRADMLDFCKHKRTHGSGVKLHRLQTALSLYSTSLCGLVLLVDNRINSYSGIKRDFATVCQECTDFHFPRIEEQLEVVQQVALYARTQRKSKCKEARDSGNQNGGSDDKSKNAERNYLNILPGEFYITRHSNLSEIHVAFHLCVDDNVKSGNITARDPAIMGLRNILKVCCTHDITTISIPLLLVHDMSEEMTIPWCLRRAELVFKCVKGFMMEMASWDGGISRTVQFLVPQSISEEMFYQLSNMLPQIFRVSSTLTLTSKH", "sequence_length": 552, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b65bfb819948a54f8292ff9f02a5c5f9a13939b7a24a4639ecc058dfda42affa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91YN0.json", "taxon_id": "10090", "uniprot_accession": "Q91YN0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fy-3-pf10154.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10154", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fy-3-pf10154.yaml" } ], "pfam_ids": [ "PF10154" ], "protein_name": "Ferry endosomal RAB5 effector complex subunit 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKNRERFCNREREFVYKFKVGSQCLELRVPLKFPVQENASHLHGRLMLLHSLPCFIEKDLKEALTQFIEEESLSDYDRDAEASLAAVKSGEVDLHQLASTWAKAYAETTLEHARPEEPSWDEDFADVYHDLIHSPASETLLNLEHNYFVSISELIGERDVELKKLRERQGIEMEKVMQELGKSLTDQDVNSLAAQHFESQQDLENKWSNELKQSTAIQKQEYQEWVIKLHQDLKNPNNSSLSEEIKVQPSQFRESVEAIGRIYEEQRKLEESFTIHLGAQLKTMHNLRLLRADMLDFCKHKRNHRSGVKLHRLQTALSLYSTSLCGLVLLVDNRINSYSGIKRDFATVCQECTDFHFPRIEEQLEVVQQVVLYARTQRRSKLKESLDSGNQNGGNDDKTKNAERNYLNVLPGEFYITRHSNLSEIHVAFHLCVDDHVKSGNITARDPAIMGLRNILKVCCTHDITTISIPLLLVHDMSEEMTIPWCLRRAELVFKCVKGFMMEMASWDGGISRTVQFLVPQSISEEMFYQLSNMLPQIFRVSSTLTLTSKH", "sequence_length": 552, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f59358d5a1cdf455053974e16d0b04e88de7e20a08fa3ffd90a88f1db8924568", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NQ89.json", "taxon_id": "9606", "uniprot_accession": "Q9NQ89", "uniprot_release": "2026_03" } ], "pfam_id": "PF10154", "short_name": "Fy-3", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cnot11-n-pf27642.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27642", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cnot11-n-pf27642.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cnot11-pf10155.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10155", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cnot11-pf10155.yaml" } ], "pfam_ids": [ "PF10155", "PF27642" ], "protein_name": "CCR4-NOT transcription complex subunit 11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGGGASTASGRLLSADPRGAREAAAFRSGPAGSSGGRGGAGGPGSGSGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPPEKFFLSQLMLAPPRELFKKTPRQIALMDVGNMGQSVDISGLQLALAERQSELPTQSKASFPSILSDPDPDSSNSAFDSSVASRITESLVSGPKPPIESHFRPEFIRPPPPLHICEDELAWLNPTEPEHAIQWDRSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTLDTGETPSETKVSK", "sequence_length": 504, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1d300108b8305c77983031c0fd64f3a391884d629f3ba3f8c6a42a5843cee1ba", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B0BNA9.json", "taxon_id": "10116", "uniprot_accession": "B0BNA9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyostelium discoideum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cnot11-pf10155.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10155", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cnot11-pf10155.yaml" } ], "pfam_ids": [ "PF10155", "PF27642" ], "protein_name": "CCR4-NOT transcription complex subunit 11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIDSKDLATLLSLLDESDKPFETIATTFYRTFSKNDHFKVGCAIYTIIKDGFIRIPSQRLIGFYILFSLYKPDSSILSSNSLSSSSILTPSSTTTTTTTEHNNSNNNTSSPSFSSSTVPTNTTLQQNTPSSTSQAISPSSSTSSTSTSSYTNTTTNTTIPSSSPTSTTNTIIENVNDYPIAFNPFLPIFIDELEKQIDSSISSPLFNPIEKQILPLFLTNLPKDFSKKTPKEIINIGMNNTANTTTTTTTTTTTATTNITLPNISISKSSLKEYKNFYLERLPNHCFPSFRSIGISQNILFQLPSTTTTTTNTPTATTTTNTTINTQQSNPSLNTIKNHDINSEELSFFSFEPRFKRAEPPSFNPTTWINPSINHGLLLSNPMSSTVAATIAATATSAPTTILIPSPTTTTSYNSKKIVRDLMTKAIKGRLKKSQILQIKNEMDIDPKLAYYSGLTPKNLPFLVENNTQVAIDTLLKLINSPDFKDHFQTLISMEMNFRSMEVVNALATVDLPPHFIPMYITNCIDSCNNIKDKAMQQRSVRLVCVFIQSLIRNNIINIKNLFCEVQTFCLEFSKIREAISLFKAINDNNNTNNTNTNTNTNNSNTTNTNNNNNNNNNNNNNNNNLINIGEENPNLIIMATK", "sequence_length": 642, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bed3eecdc07251771aa7c8c0e575b86e6e9c469faa7cb2cc5af16987be48089c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1ZXI2.json", "taxon_id": "44689", "uniprot_accession": "Q1ZXI2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccr4-not-transcription-complex-subunit-11-c-terminal-domain-ipr019312.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019312", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccr4-not-transcription-complex-subunit-11-c-terminal-domain-ipr019312.yaml" } ], "pfam_ids": [ "PF10155", "PF27642" ], "protein_name": "CCR4-NOT transcription complex subunit 11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGGGASTASGRLLSSADPRGAREAAAFRSGPAGSSGGRGGAGGPGPGIGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPPEKFFLSQLMLAPPRELFKKTPRQIALMDVGNMGQSVDISGLQLALAERQSELPTQSKASFPSILSDPDPDSSNSGFDSSVASRITESLVSGPKPPIESHFRPEFIRPPPPLHICEDELAWLNPTEPEHAIQWDRSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTLDTGETPSETKISK", "sequence_length": 505, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "23ad66d33a3ffffcbaaca64d04ffcdf5a509132930c695462a7dba8a87f8b0e8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CWN7.json", "taxon_id": "10090", "uniprot_accession": "Q9CWN7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccr4-not-transcription-complex-subunit-11-c-terminal-domain-ipr019312.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019312", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccr4-not-transcription-complex-subunit-11-c-terminal-domain-ipr019312.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cnot11-n-pf27642.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27642", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cnot11-n-pf27642.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cnot11-pf10155.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10155", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cnot11-pf10155.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9UKZ1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10155", "PF27642" ], "protein_name": "CCR4-NOT transcription complex subunit 11", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "2b3bb720c6b376028b3eb28e6c4146d37cf481151c97d50071b7f4b3af437cc5", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPGGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPPEKFFLSQLMLAPPRELFKKTPRQIALMDVGNMGQSVDISGLQLALAERQSELPTQSKASFPSILSDPDPDSSNSGFDSSVASQITEALVSGPKPPIESHFRPEFIRPPPPLHICEDELAWLNPTEPDHAIQWDKSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTLDTGETPSETKMSK", "sequence_length": 510, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2b3bb720c6b376028b3eb28e6c4146d37cf481151c97d50071b7f4b3af437cc5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UKZ1.json", "taxon_id": "9606", "uniprot_accession": "Q9UKZ1", "uniprot_release": "2026_03" } ], "pfam_id": "PF10155", "short_name": "CNOT11", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/core-mediator-complex-go0070847.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070847", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/core-mediator-complex-go0070847.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/med17-pf10156.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10156", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/med17-pf10156.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/6-10-250-2620-6-10-250-2620.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.10.250.2620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-10-250-2620-6-10-250-2620.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P32569", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10156" ], "protein_name": "Mediator of RNA polymerase II transcription subunit 17", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4a6d34cdbd9b02648e3f3421cb7da99aa1e7f8ada92f23c6ccaaa4ddc357d0d4", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTTEDPDSNHLSSETGIKLALDPNLITLALSSNPNSSLHSPTSDEPVPESAGKADTSIRLEGDELENKTKKDNDKNLKFLKNKDSLVSNPHEIYGSMPLEQLIPIILRQRGPGFKFVDLNEKELQNEIKQLGSDSSDGHNSEKKDTDGADENVQIGEDFMEVDYEDKDNPVDSRNETDHKTNENGETDDNIETVMTQEQFVKRRRDMLEHINLAMNESSLALEFVSLLLSSVKESTGMSSMSPFLRKVVKPSSLNSDKIPYVAPTKKEYIELDILNKGWKLQSLNESKDLLRASFNKLSSILQNEHDYWNKIMQSISNKDVIFKIRDRTSGQKLLAIKYGYEDSGSTYKHDRGIANIRNNIESQNLDLIPHSSSVFKGTDFVHSVKKFLRVRIFTKIESEDDYILSGESVMDRDSESEEAETKDIRKQIQLLKKIIFEKELMYQIKKECALLISYGVSIENENKVIIELPNEKFEIELLSLDDDSIVNHEQDLPKINDKRANLMLVMLRLLLVVIFKKTLRSRISSPHGLINLNVDDDILIIRPILGKVRFANYKLLLKKIIKDYVLDIVPGSSITETEVEREQPQENKNIDDENITKLNKEIRAFDKLLNIPRRELKINLPLTEHKSPNLSLMLESPNYCNALIHIKFSAGTEANAVSFDTTFSDFKEVEDFLHFIVAEYIQQKKV", "sequence_length": 687, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4a6d34cdbd9b02648e3f3421cb7da99aa1e7f8ada92f23c6ccaaa4ddc357d0d4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32569.json", "taxon_id": "559292", "uniprot_accession": "P32569", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/med17-pf10156.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10156", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/med17-pf10156.yaml" } ], "pfam_ids": [ "PF10156", "PF30532", "PF30534" ], "protein_name": "Mediator of RNA polymerase II transcription subunit 17", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGVRAVRISIESACEKQVQEVGLDGTETYLQPLSMSQNLARLAQRIDFSQGSGSEEEEAAGPDGDAPDWGGAGADQDDEEGLVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVRDKKFMTLDPVSQDALPPKQSPQTLQLISKKKSLAGAAQILLKGAERLTKSVAENQENKLQRDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIKNTDIDLDKKIPEDYCPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLPKSKPGSPHWQTKLEAAQNVLLCKEIFAQLSREAVQIKSQIPHIVVKNQIISQPFPSLQLSISLCHSSDDKKSQKCAAEKPGQEDHLYVLEHNLHLLIREFHKQTLSSIVMPHPASAPFGHKRMRLSGPQAFDKNEINSIQSTEGLLEKIIKQAKHIFLRSRTAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLITSQGYEQICKSIQLQLNIGVEQVRVVHRDGRVIMLSHQEQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPIESIGNASAITVASPSGDYAISVRNGPESGSKIMVQFPRNQCKDLPKSDVLQDSKWSHLRGPFKEVQWNKMEGRNFVYKMELLMSALSPCLL", "sequence_length": 649, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5484fec7eccb72ce99f5b6d098b8cfabc00914e3d08d8ca8735cba59a7f5c395", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VCD5.json", "taxon_id": "10090", "uniprot_accession": "Q8VCD5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/core-mediator-complex-go0070847.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070847", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/core-mediator-complex-go0070847.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/med17-pf10156.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10156", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/med17-pf10156.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9NVC6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10156", "PF30532", "PF30534" ], "protein_name": "Mediator of RNA polymerase II transcription subunit 17", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "012339a86a89e5e2a785208de67e89465a27f364c4ba34d3f75a739bf80d1666", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSGVRAVRISIESACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEAAGTEGDAQEWPGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVRDKKFMTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIKNTDLDLDKKIPEDYCPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLPKSKPGSPHWQTKLEAAQNVLLCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSNDKKSQKFATEKQCPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINSLQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLITSQGYEQICKSIQLQLNIGVEQIRVVHRDGRVITLSYQEQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPIESIGNASAITVASPSGDYAISVRNGPESGSKIMVQFPRNQCKDLPKSDVLQDNKWSHLRGPFKEVQWNKMEGRNFVYKMELLMSALSPCLL", "sequence_length": 651, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "012339a86a89e5e2a785208de67e89465a27f364c4ba34d3f75a739bf80d1666", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NVC6.json", "taxon_id": "9606", "uniprot_accession": "Q9NVC6", "uniprot_release": "2026_03" } ], "pfam_id": "PF10156", "short_name": "Med17", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/borcs6-pf10157.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10157", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/borcs6-pf10157.yaml" } ], "pfam_ids": [ "PF10157" ], "protein_name": "BLOC-1-related complex subunit 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESPRGRPGPETDLLALGEQQAAIFGDGPGQTPSERPSDLRLSEDEEAENVGGASCHPKASLKTSSCSFVHPPEWEAPEDKPGRGGTFSGAGSRLGAPDPEFDLHGSSRRKDPEPPEAKPESERVCRRGSPVGGGMDVEQKEDDNEAAEAGRGGRSFSSRLQDSRSLDGLSGACGGPASSGGAESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAPQPPPPAPTRPCSAPTPTPAIPPIDPDVLRDLERLSRELGGRVDRLLRGLGGAVQELTALSVGCIQTYRDAVDSLGEAVDMSIKGMYTLLARCEELERALQPVQGLARQVRDIRRTLEVLEALCK", "sequence_length": 353, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "703ec7188f3847b65b20ebb81a9a50249b1c99b1cf6a497085dfe5f2716fcfa0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3SX20.json", "taxon_id": "9913", "uniprot_accession": "Q3SX20", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bloc-1-related-complex-subunit-6-c-terminal-helix-ipr046465.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046465", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bloc-1-related-complex-subunit-6-c-terminal-helix-ipr046465.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/borcs6-pf10157.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10157", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/borcs6-pf10157.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q96GS4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10157" ], "protein_name": "BLOC-1-related complex subunit 6", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "aef1dac5f06c06677d00c8b9fb95e64cbe765a342998d57042b52732387be334", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MESSRGRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPARPCPAPAPTPTPAIPPIDPEVLRDLERLSRELGGRVDRLLRGLGGAVQELTALSVGCIQTYRDAVDSLGEAVDMSIKGMYTLLARCEELERALQPVQGLARQVRDIRRTLEVLEALCK", "sequence_length": 357, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "aef1dac5f06c06677d00c8b9fb95e64cbe765a342998d57042b52732387be334", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96GS4.json", "taxon_id": "9606", "uniprot_accession": "Q96GS4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bloc-1-related-complex-subunit-6-c-terminal-helix-ipr046465.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046465", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bloc-1-related-complex-subunit-6-c-terminal-helix-ipr046465.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/borcs6-pf10157.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10157", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/borcs6-pf10157.yaml" } ], "pfam_ids": [ "PF10157" ], "protein_name": "BLOC-1-related complex subunit 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAAQGRLGPEPELSVGAEHQAATFSGRPSRTPSKPPSVRTLSGEEEAESVGVSSRHPRASPKTWSGSIAHGPELDTWEDKPSSRATPSGARGRRGVPGSEHAPPPSSWYPEPEPSEDQPSALRVCRRGSPGGVEMNVELPQQEGDDDDDEDEEAAAGRAGRSFPSRLQDSRSLDGLSGACGGGGSSSSGETGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAPPPVPPASVRPCLTPAPTPTIPPIDPDVLRDLERLSRELGGRVDRLLRGLGGAVQELTALSVGCIQTYRDAVDSLGEAVDMSIKGMYTLLARCEELERALQPVQGLARQVRDIRRTLEVLEALCK", "sequence_length": 360, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e9fc098e426f3a6711d15ee5c254d00002a6481db208d1be6ff17eb4a85471a4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D6W8.json", "taxon_id": "10090", "uniprot_accession": "Q9D6W8", "uniprot_release": "2026_03" } ], "pfam_id": "PF10157", "short_name": "BORCS6", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bri3-pf10164.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10164", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bri3-pf10164.yaml" } ], "pfam_ids": [ "PF10164" ], "protein_name": "Membrane protein BRI3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDHKPLLQERPPAYNLEAGQGDYACGPHGYGAIPAAPPPPPYPYLVTGIPTHHPRVYNIHSRTVTRYPANSIVVVGGCPVCRVGVLEDCFTFLGIFLAIILFPFGFICCFALRKRRCPNCGATFA", "sequence_length": 125, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "72dfcc1dd68b7fd17e60823c423adab6b88fb9b87a73806b533ed0a4e4e479ed", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O95415.json", "taxon_id": "9606", "uniprot_accession": "O95415", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bri3-pf10164.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10164", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bri3-pf10164.yaml" } ], "pfam_ids": [ "PF10164" ], "protein_name": "Membrane protein BRI3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDHKPLLQERPPAYNLEAGQGDYACGPHGYGAIPTAPPPPPYPYLVTGIPTSHPRVYNIHSRTVTRYPANSIVVVGGCPVCRVGVLEYCFTCLGIFLAIVLFPFGFLCCFALRKRRCPNCGAVFT", "sequence_length": 125, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "254bd07a59fd9d779b8c4a19af3f0a88a5d586153a2a5d66f374d2a87f4b4246", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P28662.json", "taxon_id": "10090", "uniprot_accession": "P28662", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bri3-pf10164.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10164", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bri3-pf10164.yaml" } ], "pfam_ids": [ "PF10164" ], "protein_name": "Membrane protein BRI3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDHKPLLQERPPAYNLEAGQGDYACGPHGYGAIPTAPPPPPYPYLVTGIPTSHPRVYNIHSRAVTRYPANSIVVVGGCPVCRVGVLEYCFTCLGIFLAIVLFPFGFLCCFALRKRRCPNCGAVFT", "sequence_length": 125, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4e963765e4ae05b224b95d6ce4e420010d3d194a7ce22e049040666d94bec0fb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5PPK1.json", "taxon_id": "10116", "uniprot_accession": "Q5PPK1", "uniprot_release": "2026_03" } ], "pfam_id": "PF10164", "short_name": "BRI3", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2368-pf10166.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10166", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2368-pf10166.yaml" } ], "pfam_ids": [ "PF10166" ], "protein_name": "Plasminogen receptor (KT)", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFIFSKSMNENMKNQQEFMVMHARLQLERQLIMQNEMRERQMAMQIAWSREFLKYFGTFFGIATISLAAGAIKRKKPAFLIPIVPLSFIFTYQYDLGYGTLLQRMKSEAEDILETEKTKLELPKGLITFESLEKARREQSKFFSDK", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b8fb95d32afaf9205ed7e64b61de3c2f46a011660ae710638ab588c1716dad19", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D4ACN8.json", "taxon_id": "10116", "uniprot_accession": "D4ACN8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2368-pf10166.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10166", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2368-pf10166.yaml" } ], "pfam_ids": [ "PF10166" ], "protein_name": "Plasminogen receptor (KT)", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFIFSKSMNENMKNQQEFMVTHARLQLERHLTMQNEMRERQMAMQIAWSREFLKYFGTFFGIATISLATGALKRKKPAFLVPIVPLSFIFTYQYDLGYGTLLQRMKSEAEDILETEKTKLELPKGLITFESLEKARREQSKLFSDK", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b97673997081d94e839f7f79c6d1720c8c3ac3b93e5db1d133d4484370cedb99", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D3P8.json", "taxon_id": "10090", "uniprot_accession": "Q9D3P8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2368-pf10166.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10166", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2368-pf10166.yaml" } ], "pfam_ids": [ "PF10166" ], "protein_name": "Plasminogen receptor (KT)", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFIFSKSMNESMKNQKEFMLMNARLQLERQLIMQSEMRERQMAMQIAWSREFLKYFGTFFGLAAISLTAGAIKKKKPAFLVPIVPLSFILTYQYDLGYGTLLERMKGEAEDILETEKSKLQLPRGMITFESIEKARKEQSRFFIDK", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2b6b548714e39d7743bdfe05bf3906e10a7fb11233305c0d3975ddc7abc9f840", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HBL7.json", "taxon_id": "9606", "uniprot_accession": "Q9HBL7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10166", "short_name": "DUF2368", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tim29-pf10171.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10171", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tim29-pf10171.yaml" } ], "pfam_ids": [ "PF10171" ], "protein_name": "Mitochondrial import inner membrane translocase subunit Tim29", 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"data/traits/sequence/family/pfam/tim29-pf10171.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10171", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tim29-pf10171.yaml" } ], "pfam_ids": [ "PF10171" ], "protein_name": "Mitochondrial import inner membrane translocase subunit Tim29", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAALRRFWSRRRAEAGDAVVAKPGVWARLGSWARALLRDYAEACRDASAEARARPGRAAVYVGLLGGAAACFTLAPSEGAFEEALLEASGTLLLLAPATRNRESEAFVQRLLWLRGRGRLRYVNLGLCSLVYEAPFDAQASLYQARCRYLQPRWTDFPGRVLDVGFVGRWWVLGAWMRDCDINDDEFLHLPAHLRVVGPQQLHSETNERLFDEKYKPVVLTDDQVDQALWEEQVLQKEKKDRLALSQAHSLVQAEAPR", "sequence_length": 260, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c9a87b6716c954286e12689cd625c12590b784d0647313fc38a6cf16f92708ee", "sequence_version": 2, "source_url": 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"data/traits/sequence/domain/cdd/nedd4-family-interacting-protein-2-the-nedd4-neural-precursor-cell-exp-cd22306.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22306", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/nedd4-family-interacting-protein-2-the-nedd4-neural-precursor-cell-exp-cd22306.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nedd4-bsd2-pf10176.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10176", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nedd4-bsd2-pf10176.yaml" } ], "pfam_ids": [ "PF10176" ], "protein_name": "NEDD4 family-interacting protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARRRSQRVCASGPSMLNSARGAPELLRGTATNAEVSAAAAGATGSEELPPGDRGCRNGGGRGPAATTSSTGVAVGAEHGEDSLSRKPDPEPGRMDHHQPGTGRYQVLLNEEDNSESSAIEQPPTSNPAPQIVQAASSAPALETDSSPPPYSSITVEVPTTSDTEVYGEFYPVPPPYSVATSLPTYDEAEKAKAAAMAAAAAETSQRIQEEECPPRDDFSDADQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSLIKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRYFFLL", "sequence_length": 336, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7ff55c01a9ea8d735f221aff73992d3ad4911ad160b4af3250c32e4c599d14f6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NV92.json", "taxon_id": "9606", "uniprot_accession": "Q9NV92", "uniprot_release": "2026_03" } ], "pfam_id": "PF10176", "short_name": "NEDD4_Bsd2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2371-pf10177.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10177", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2371-pf10177.yaml" } ], "pfam_ids": [ "PF10177" ], "protein_name": "Transmembrane protein 200C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIATGGLLRISARKQDPLRPPSQIPKRKRKAKKRRKNDVVVVKGKLKLCSISGLIALCGILVLLVGIAMAVVGYWPKATGTNREGGKQLPPAGSSHRVPTTANSSSSGSKNRSRSHPRAPGGVNSSSAGAPRSTPPARAASPSSSSTSVGFFFRIFSGYLHSDKLKVFGPLIMGIGIFLFICANAVLHENRDKKTKIINLRDLYSTVIDVHSLRAKDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEGASQEPPTAEQPQPVQRQFTNKEKLIMISRSHAIGVEEELESTGI", "sequence_length": 621, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "26f379c14d03d53ce07168f66bb23d725ad8eaa2cf6ed4ec9ffbd45d3621854d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A6NKL6.json", "taxon_id": "9606", "uniprot_accession": "A6NKL6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2371-pf10177.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10177", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2371-pf10177.yaml" } ], "pfam_ids": [ "PF10177" ], "protein_name": "Transmembrane protein 200B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAGSPEECGEVRRSPEGRVSRLGRRLGRRRRPRSPPEPLRVRARLRLRSPSGAFAALGALVVLVGMGIAVAGYWPHRAGAPGSRAANASSPQMSELRREGRGGGRAHGPHERLRLLGPVIMGVGLFVFICANTLLYENRDLETRRLRQGVLRAQALRPPDGPGWDCALLPSPGPRSPRAVGCAEPEIWDPSPRRGTSPVPSVRSLRSEPANPRLGLPALLNSYPLKGPGLPPPWGPRTQTGHVIITVQPSGSCIEHSKSLDLGLGELLLGAPAARDCAHRSWPRLDRLSLGGYAKLGGGGDLGARV", "sequence_length": 307, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9ee4dda3be2e5be14460645a55c60755056e02ae14e5f9dc54827c5685487451", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q69YZ2.json", "taxon_id": "9606", "uniprot_accession": "Q69YZ2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2371-pf10177.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10177", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2371-pf10177.yaml" } ], "pfam_ids": [ "PF10177" ], "protein_name": "Transmembrane protein 200A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIATGGVITGLAALKRQDSARSQQHVNLSPSPATQEKKPIRRRPRADVVVVRGKIRLYSPSGFFLILGVLISIIGIAMAVLGYWPQKEHFIDAETTLSTNETQVIRNEGGVVVRFFEQHLHSDKMKMLGPFTMGIGIFIFICANAILHENRDKETKIIHMRDIYSTVIDIHTLRIKEQRQMNGMYTGLMGETEVKQNGSSCASRLAANTIASFSGFRSSFRMDSSVEEDELMLNEGKSSGHLMPPLLSDSSVSVFGLYPPPSKTTDDKTSGSKKCETKSIVSSSISAFTLPVIKLNNCVIDEPSIDNITEDADNLKSRSRNLSMDSLVVPLPNTSESFQPVSTVLPRNNSIGESLSSQYKSSMALGPGAGQLLSPGAARRQFGSNTSLHLLSSHSKSLDLDRGPSTLTVQAEQRKHPSWPRLDRNNSKGYMKLENKEDPMDRLLVPQVAIKKDFTNKEKLLMISRSHNNLSFEHDEFLSNNLKRGTSETRF", "sequence_length": 491, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bbbdaef011652225f02364985b40a1ec8e8b2ea09c7b40053834f92f19528763", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q86VY9.json", "taxon_id": "9606", "uniprot_accession": "Q86VY9", "uniprot_release": "2026_03" } ], "pfam_id": "PF10177", "short_name": "DUF2371", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pac3-pf10178.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10178", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pac3-pf10178.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/proteasome-assembly-chaperone-ipr053720.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053720", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/proteasome-assembly-chaperone-ipr053720.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-30-230-90-3-30-230-90.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.230.90", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-30-230-90-3-30-230-90.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9BT73", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10178" ], "protein_name": "Proteasome assembly chaperone 3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "79d2463c8acf45633d510db5e7e97e62956456a45077c80daec252c1dd5b3e37", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEDTPLVISKQKTEVVCGVPTQVVCTAFSSHILVVVTQFGKMGTLVSLEPSSVASDVSKPVLTTKVLLGQDEPLIHVFAKNLVAFVSQEAGNRAVLLAVAVKDKSMEGLKALREVIRVCQVW", "sequence_length": 122, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "79d2463c8acf45633d510db5e7e97e62956456a45077c80daec252c1dd5b3e37", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BT73.json", "taxon_id": "9606", "uniprot_accession": "Q9BT73", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pac3-pf10178.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10178", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pac3-pf10178.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/proteasome-assembly-chaperone-ipr053720.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053720", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/proteasome-assembly-chaperone-ipr053720.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-30-230-90-3-30-230-90.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.230.90", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-30-230-90-3-30-230-90.yaml" } ], "pfam_ids": [ "PF10178" ], "protein_name": "Proteasome assembly chaperone 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDKPLVVSKQKTEVVCGVPTQVVCTAFSSHILVVVTQFGKMGTLVSLEPSNVANDISKPVLTTRVLLGQDEPLIHVFAKNLVAFVSQEAGNRAVLLAMAVKDKSMERLKALKEVIRLCQVW", "sequence_length": 122, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "319410a9e1541d3cb41c1d86f927b93ff7a2f157728f49313be10832c3a27b80", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CZH3.json", "taxon_id": "10090", "uniprot_accession": "Q9CZH3", "uniprot_release": "2026_03" } ], "pfam_id": "PF10178", "short_name": "PAC3", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/neuron-derived-neurotrophic-factor-first-fn-iii-domain-ipr055271.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055271", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/neuron-derived-neurotrophic-factor-first-fn-iii-domain-ipr055271.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/neuron-derived-neurotrophic-factor-n-terminal-domain-ipr056225.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/neuron-derived-neurotrophic-factor-n-terminal-domain-ipr056225.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-ndnf-c-terminal-ipr045805.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045805", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-ndnf-c-terminal-ipr045805.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10189", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/ints3-n-pf10189.yaml" } ], "pfam_ids": [ "PF10189", "PF24566" ], "protein_name": "Integrator complex subunit 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-retention-in-golgi-apparatus-go0045053.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0045053", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-retention-in-golgi-apparatus-go0045053.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/retrograde-vesicle-mediated-transport-golgi-to-endoplasmic-reticulum-go0006890.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0006890", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/retrograde-vesicle-mediated-transport-golgi-to-endoplasmic-reticulum-go0006890.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/shoot-system-morphogenesis-go0010016.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010016", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/shoot-system-morphogenesis-go0010016.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/cog7-pf10191.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10191", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/cog7-pf10191.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9FGN0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10191" ], "protein_name": "Conserved oligomeric Golgi complex subunit 7", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f6a8b155dc0fc46b8a78c8eeadf4dc10333145adc188740f06d1daf64543e26f", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MMLDLGPFSDEKFDAKRWVNSSCQARHPQDSLEKHLVDLEMKLQIASEEIGASLEEQSGGALLRVPRATRDVLRLRDDAVSLRGSVAGILQKLKKAEGSSADCIAALARVDNVKQRMEAAYKTLQDAAGLTQLSSTVEDVFASGDLPRAAETLASMRNCLSAVGEVAEFANVRKQLEVLEDRLEAMVQPRLTDALTYHKVDVAQDLRVILIRIGRFKSLELQYSKVRLKPIKQLWEDFDTKQRANKLANERSESQRLSSGDEFQSTSSQTSFASWLTSFYDELLLYLEQEWKWCMVAFPDDYMTLVPKLLVETMGVLGASFVSRLNLATGDAVPETKALAKGVMDLLSGDLPKGINIQTKHLEALIELHNVTGSFARNIQHLFAESELRILIDTLKAVYSPFESFKQKYGKMERAILSSEIAVVDLRGAVTRGVGAQGIELSETVRRMEESIPQVVVLLEAAVERCIGFTGGSEADELILALDDIMLQYISMLQETLKSLRVVCGVDGTGDGVGSKKDASAEKRESSRKMDLTSNEEWSIVQGALQILTVADCLTSRSSVFEASLRATLARLNSSLSISLFGTNLDHNLSHLKSEQTAGDLSMAGRASMDVAAIRLVDVPEKAHKLLNLLEQSKDPRFHALPLASQRVAAFADTVNELVYDVLISKVRQRLGEVSRLPIWSSVEEQTAFPLPNFSSYPQSYVTSVGEYLLTLPQQLEPLAEGISTNGDSNNEDAQFFATEWMFKVAEGATALYMDQLRGIQYISDRGAQQLSVDIEYLSNVLSALSMPIPPVLATFQTCLATPRGELKDVMKSEAGNELDCPTANLVCKMRRISFD", "sequence_length": 836, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f6a8b155dc0fc46b8a78c8eeadf4dc10333145adc188740f06d1daf64543e26f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FGN0.json", "taxon_id": "3702", "uniprot_accession": "Q9FGN0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/acroblast-go0036063.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0036063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/acroblast-go0036063.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/actomyosin-contractile-ring-contraction-go0000916.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000916", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/actomyosin-contractile-ring-contraction-go0000916.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-localization-to-golgi-membrane-go1903292.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1903292", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-localization-to-golgi-membrane-go1903292.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/retrograde-transport-vesicle-recycling-within-golgi-go0000301.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000301", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/retrograde-transport-vesicle-recycling-within-golgi-go0000301.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/spermatid-nucleus-elongation-go0007290.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0007290", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/spermatid-nucleus-elongation-go0007290.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/cog7-pf10191.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10191", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/cog7-pf10191.yaml" } ], "pfam_ids": [ "PF10191" ], "protein_name": "Conserved oligomeric Golgi complex subunit 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVSALSETTFSPAEWINANYKKFVEENGRDDSEAASAFIRSYVAKLQLYIFNVNNAVEESSRQVVASMPRIAKESAALQADVHRLQEKMSAMRLEVAAVQSETGECMATLERLNTKSQKLQVAKESLQESDGWGNLLAELEDGFERNDLKGVCDKLIALQKSLHAQEQLPGHAERQTQVEDFKNRLEALASPSVVQCFAEGNTEQAQHFVQIFTSIQRLPQLQQYYRAVQKNFWQQQWKQTLELQGTESQPQQQQFLTLYYDQLLEHCQRQVKWCSNLFGENSPQPFLVIAELLPALQPTRDAHILQLLKTSNERLEMLALFAKVNHSFVLHLNSLLEQSHITLSEELHRLLGEAIFEYFHKFIQQYPRLEETQLSTQVDRLSSNQATPSDGVRHLEESTRKLYEWLKEACERCASITSDLALCKLITLLNGIFKRQLESFGRIQRQIGLSLGSSSYAAQSENWSLLQYTMSQLQCLADFQVQLHQFEQDLHTRMVMLSNRLTKPSNRGPITIFQTCDHAARTQLLNSIADYQQKKSEATDSLGIFPQIYATLKSHFADTHDITLNILLQPIETHLAHIRPPVQDHAASGIEMPSFSFAPQESITQIGQYLLTLPQHLEPLLLSPSSLLKQALEVCNIKYTQAIPCADVLLSLVVEQCCVLYVTQILQIKSLPSSAATQLSVDIEYLSNVLEELGLSINLQLSQILTLLKAAPDQYLTLSSGCEPRLVTAIRQMRNIISTQ", "sequence_length": 742, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a42c79e4f28ebb08f5e78f3aa50f8792f4fd434169d0af1639b241bfacbd581d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VAD6.json", "taxon_id": "7227", "uniprot_accession": "Q9VAD6", "uniprot_release": "2026_03" } ], "pfam_id": "PF10191", "short_name": "COG7", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2340-pf10209.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10209", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2340-pf10209.yaml" } ], "pfam_ids": [ "PF10209" ], "protein_name": "Altered inheritance rate of mitochondria protein 29", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSTKRLKMSTTFHDYDLEEPLTSNARPLKNSVITIRVIKSFPYRNVKNIVLHDYDLADKTAKDLFNDVLNKIQNEGSFRPFRNVKFDTLKIYTHAHGSKTVNLVINFDHDDDWTLDIENDKKKLFEYGIENETEISLFNKEDYLRFKENPEEKW", "sequence_length": 155, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8fabe70ba15111e6e1b75fa17b87a14c4a13dd14a25de385756920e63824bb64", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P36154.json", "taxon_id": "559292", "uniprot_accession": "P36154", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2340-pf10209.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10209", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2340-pf10209.yaml" } ], "pfam_ids": [ "PF10209" ], "protein_name": "UPF0538 protein C2orf76", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPGEVTITVRLIRSFEHRNFKPVVYHGVNLDQTVKEFIVFLKQDIPLRTNLPPPFRNYKYDALKIIHQAHKSKTNELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKNYKANPISSW", "sequence_length": 126, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8a0115b635a932d90d35fc57a78b6fa52343eb321adbb2b531f3a2fd016eff5e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q3KRA6.json", "taxon_id": "9606", "uniprot_accession": "Q3KRA6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyostelium discoideum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2340-pf10209.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10209", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2340-pf10209.yaml" } ], "pfam_ids": [ "PF10209" ], "protein_name": "UPF0538 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENENKILIIRVIRSFEYRTIKNLILKDIDLNTNVSDFKKLVADKIQTTPGFTPFKTKQYDSMKIFFVPHGQKPNNLTINIENDHFFLNNNKSLAENGVVYETEISFFVMEDYLKYKENPENKW", "sequence_length": 124, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a4cc2e5811baab2a66bf31001bbf72cc0d4148a64f91503ea38b4daadeafc796", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q54R16.json", "taxon_id": "44689", "uniprot_accession": "Q54R16", "uniprot_release": "2026_03" } ], "pfam_id": "PF10209", "short_name": "DUF2340", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2039-pf10217.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2039-pf10217.yaml" } ], "pfam_ids": [ "PF10217" ], "protein_name": "Uncharacterized protein C9orf85 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSQKGNVTRSRPQKHQNTFTFKNDKFDKSVQTKKINAKLHDGVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACKLEVCAKCGKEEEIVIPFNKEPEPSENTESEGSNHRRSCKRKEDSDEDLDAESDSEGEDEDTQA", "sequence_length": 155, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b8a25bc03c595583ab67f28d59127da81fbd7ff81abff4a0450dd6c57471d81e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q68FU5.json", "taxon_id": "10116", "uniprot_accession": "Q68FU5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2039-pf10217.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2039-pf10217.yaml" } ], "pfam_ids": [ "PF10217" ], "protein_name": "Uncharacterized protein C9orf85", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSQKGNVARSRPQKHQNTFSFKNDKFDKSVQTKKINAKLHDGVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEDIVIPWSLPLLPRLECSGRILAHHNLRLPCSSDSPASASRVAGTTGAHHHAQLIFVFLVEMGFHYVGQAGLELLTS", "sequence_length": 179, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e1f0a8f573965d4308dfedf9efac84eab8902eb05f60b7c97f85142de46cba4a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96MD7.json", "taxon_id": "9606", "uniprot_accession": "Q96MD7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2039-pf10217.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2039-pf10217.yaml" } ], "pfam_ids": [ "PF10217" ], "protein_name": "Uncharacterized protein C9orf85 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSQKGNVTRSRPQKHQNTFTFKNDKFDKSVQTKKINAKLHDGVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEEIVIPFNKEPDAPENTENEGSGHRRRCGRKEDSDEDLDAESDSDGEDGDTQA", "sequence_length": 155, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9b5f5c0d8287b31077fe4e7b222bbb405812a5d43efdb10c9bf3ab349eead9b9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CQ90.json", "taxon_id": "10090", "uniprot_accession": "Q9CQ90", "uniprot_release": "2026_03" } ], "pfam_id": "PF10217", "short_name": "DUF2039", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-srebp-signaling-pathway-go2000640.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-srebp-signaling-pathway-go2000640.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spring1-pf10218.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spring1-pf10218.yaml" } ], "pfam_ids": [ "PF10218" ], "protein_name": "SREBP regulating gene protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLNLAALLWRRLLRKRWVLALVFGLSLVYFLSSTFKQEERAVRDRNLLQVQDREQPIPWKVQFNLGNSSRPSNQCRNSVQGKHLLTDELGYVCERKDLLANGCCDVSVPSTKQYCCDGCLANGCCEAYEYCVSCCLQPSKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTYRDPIAKYCYGESPPELFPA", "sequence_length": 205, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "577cb0ab35a6b18c7fb107d29343481750f20786c04a883b8b318b92ef598944", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BTG6.json", "taxon_id": "10090", "uniprot_accession": "Q8BTG6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-srebp-signaling-pathway-go2000640.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-srebp-signaling-pathway-go2000640.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spring1-pf10218.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spring1-pf10218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9H741", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10218" ], "protein_name": "SREBP regulating gene protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "30f1d6c7f6cb3b6f49c3d52ee2f49d15eeec50aca2cbeeab1635fa8fe6fc46d7", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVNLAAMVWRRLLRKRWVLALVFGLSLVYFLSSTFKQEERAVRDRNLLQVHDHNQPIPWKVQFNLGNSSRPSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTYRDPIAKYCYGESPPELFPA", "sequence_length": 205, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "30f1d6c7f6cb3b6f49c3d52ee2f49d15eeec50aca2cbeeab1635fa8fe6fc46d7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H741.json", "taxon_id": "9606", "uniprot_accession": "Q9H741", "uniprot_release": "2026_03" } ], "pfam_id": "PF10218", "short_name": "SPRING1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/smg8-smg9-pf10220.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10220", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/smg8-smg9-pf10220.yaml" } ], "pfam_ids": [ "PF10220" ], "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDIAKWVEHARTCYSTQLDTKIKVIGVIGKDYPDHGKGDNINCYLRENVFPVAATEDETCTIRGHFSEDDQILFLVMNGVDDVANIRKCLKSNPKSNYFDAMAESECQQIRMLHFLFISCHFIIIFEQTSRIDLELMRFLKKVNSARIQLRKKINQRLVASDLRDVSFNNRILSSAESEGRMVVPRLLIAFQRNNIRPDVNPGKKLQRELYEKLEKNLDNQFSDILKLYDLIDCGASSLCQLNETIPVVHLLNPKIVKRDIIGEMFEILMADAENTKISGNAGTLPSNNSFVKFLEDNFRSEKNEISLENVIELMNCLQCVLDGDLEEKHEKTAIQTFIKRIQNDHMEEARRLYTNAQRPGERRGADRFKDSEKPVKIRSKEEHLMRFNEATHYIDSVVGVNSREALSQLQAQCNEMWQSDMRACESVSMMGRSCVRKIHPTFGDQTAPEHRWTAHDASNTMISTCVCGRKQLIRPEPFSVKEANSDFYDHPDFKCCRRLWRYQFQLYQEDSEEKDDIMWADRESNSLRAAKKMAQREDELAEEDTDLDIPESLLDPDSTSPSDEDDVRVRTMSSSESSSQESDAYLRPTSRRDESMASKTERELTIDHVKRMQKLELAGKSEDFLITVPNSMTTGKLPIFPSWHLTSLGDSSIYSHGAGLKNQPNFKIGGDYLSPVVVLLDVNFDVWNRDLNKIRSEDFSRKCGKDNKDDSARVKLFVGFEYECSRGHRFFVDYNGEPLIYSKGSNVIRESAHRSSLGNVLQADLPIRRPCTCRKLPLQSAQLQKVHVVTPKAPVHITIDPKVLIPTHEGVYGTGQEPLELHHSKYYILHLPTVYSGPSGAWMPGEFNPEKQGVWMGGALKVAYKPVMSFKW", "sequence_length": 873, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c662edc33631b390f8bce96f96698ed383935cb2aee8b3d9cffc3e734fd2f101", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O62301.json", "taxon_id": "6239", "uniprot_accession": "O62301", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/smg8-smg9-pf10220.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10220", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/smg8-smg9-pf10220.yaml" } ], "pfam_ids": [ "PF10220" ], "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGPVSLRDLLMGASAWMGSESPGGSPTEGGGSAAGGPEPPWREDEICVVGIFGKTALRLNSEKFSLVNTVCDRQVFPLFRHQDPGDPGPGIRTEAGAVGEAGGAEDPGAAAGGSVRGSGAVAEGNRTEAGSQDYSLLQAYYSQESKVLYLLLTSICDNSQLLRACRALQSGEAGGGLSLPHAEAHEFWKHQEKLQCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDGLRQKVLPLLKTAIKDCPVGKDWKLNCRPCPPRLLFLFQLNGALKVEPPRNQDPAHPDKPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDPVGMLLDQLRSHCTVKDPESLLVPAPLSGPRRYQVMRQHSRQQLSFHIDSSSSSSSGQLVDFTLREFLWQHVELVLSKKGFDDSVGRNPQPSHFELPTYQKWISAASKLYEVAIDGKEEDLGSPTGELTSKILSSIKVLEGFLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHKYAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEKPEADRNPPVLYHNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKCCGKLDHINFPVFEPSTPDPAPAKNESSPAPPDSDADKLKEKEPQTQGESTSLSLALSLGQSTDSLGTYPADPQAGGDNPEVHGQVEVKTEKRPNFVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGPAKSYNFHTGLDQQGFIPGTNYLMPWDIVIRTRAEDEGDLDTNSWPAPNKAIPGKRSAVVMGRGRRRDDIARAFVGFEYEDSRGRRFMCSGPDKVMKVMGSGPKESALKALNSDMPLYILSSSQGRGLKPHYAQLMRLFVVVPDAPLQIILMPQVQPGPPPCPVFYPEKQEITLPPDGLWVLRFPYAYVTERGPCFPPKENVQLMSYKVLRGVLKAVTQ", "sequence_length": 991, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f46ec3289e608b67b797bb88eedbe345f09a640a2ab6b5f6eb497d6235ab16f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8ND04.json", "taxon_id": "9606", "uniprot_accession": "Q8ND04", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/smg8-smg9-pf10220.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10220", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/smg8-smg9-pf10220.yaml" } ], "pfam_ids": [ "PF10220" ], "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGPVSLRELLMGASAWLGSESPGGPSAEGGGNAAGTPEPPWREDEICVVGIFGKTALRLNSEKFSLVNTVCDRQVFPLFHHQDPGDPGTGIKTKAVSVGEAGGAGDPGAAAGDSLRGGMATAEGNRAEPGPQDFSLLQAYYNQESKVLYLILTSICDNSQLLRACRALQSGEAGGGLSLPHAETHEFWKHQEKLQCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDGLRQKVLPLLKTAIKDCPVGKDWKLNCRPCPPRLLFLFQLNGALKVEPPRSQDTAHPDKPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDPIGMLLDQLRSHCTVKDPESLLVPAPLSGPRRYQAMRQHSRQQLSFHIDSSTSSSSGQLVDFTLREFLWQHVELVLSKKGFDDSVGRNPQPSHFELPTYQKWISAAAKLYEVAIDGKEEDLGSPTGELTSKILSSIKVLEGFLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHKYAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEKPEADRNPPVLYHNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKCCGKLDHINFPVFEPSTPDPAPAKNEPSPAPPDSDAEKLKEKEPQTQGESTSLSLALSLGQSTDSLGTYPADPQAGGDNPEVHGQGEGKSEKRPNLVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGPAKSYNFHTGLDQQGFVPGTNYLMPWDIVIRTRAEDEGDLDTNSWPAPNKAIPGKRSAVVMGRGRRRDDIARAFVGFEYEDSRGRRFMCSGPDKVMKVMGSGPKESALKALNSDMPLYILSSSQGRGLKPHYAQLMRLFVVVPDAPLQIILMPQVQPGPPPCPVFYPEKQEITLPPDGLWVLRFPYAYVTERGPCFPPKENVQLMSYKVLRGVLKAVTQ", "sequence_length": 991, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "df65bacc2bbb92314b26acd938b4638c961c8a8c201f7e2068d53b5d3dc0e950", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VE18.json", "taxon_id": "10090", "uniprot_accession": "Q8VE18", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/smg8-smg9-pf10220.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10220", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/smg8-smg9-pf10220.yaml" } ], "pfam_ids": [ "PF10220" ], "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDDYYTWTYPDIPENVAQELLQLNGSLVVVGIVGRSDCDQANKMVAFGMEPPSEHTPKDGQMQCYYKPGTSILLLHFESTYDAEIAGQMIDVCIEDVDTPFDIDSFFEGIRCRFVRMMLLALHVCHIVVYVETGQTFDPTLITVFQLAKFAREQHLMQFLPQMLRETPAARMSERTRLCTPRILFLFENFPSDEPKTRECVSTYEFQMEDCIYELLRHHNIVTNSSSNSLVALPNNKQFVFFNAHEELREDTLMKAVECLNETMYKPDLKEEEEDLEILALAPFDGFVKPFALPVDEKEWDNQQYKKDHTVWNFLERHVQDALMGCFEAGSFKQHAQQGTFQLLNSKEWHDCMATMHTLLVENTKDPNLETSNEEYKNFLKNFDESLNYEKKFWAHLCELGLKKGIAAYKNAAPENYGSATHRQLLAEATLAFEEEGRGPQAQAALAKLASICHKHWQDGRQQCEQLSLRSHPCTLPKKVPHEKHNSGVIHISSCNCGRTQGRREDPFNLRQANYEFYEHIAQMCNLCVKVKQYQFPIFEPSVSDYRAAAFEAAFPLLNNGKSGAPQDEDAEEDEAEEEEGQEQEQPTEEQLQNTASNCCSQPLSPTFGSDLNMSIAGFGASLKESQASSEQLLNSEQNTTSSGTSSADTDNELVVELQEPAKKEAREDAGPAHAVSTSTTEYLPGLVHTVSNFGLLPLFPSWSLACVGPSSIYSHNTGLQEHFQSGFLSGANFLLPWDVQLRLVHAPKQQYQQQHHGKKQQRWKKQGDRLSLKIFVGMEYECSRGHRFMMCAPDRVLRGGADIERETCSMVVHNNMPLYYPCPCRSQNNFLAQLMRIHVVTPKAPVNIIVDPKVCVGRYTFTMGSIVPPRLSQSAYWIIRLPYVYQGDDVLIAPPEQLDPGYPLTGGYLLPGMFGVVETDPTLDLNEPDKMGASAAGNFTRI", "sequence_length": 944, "sequence_origin": 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"data/traits/function/pathway/go/regulation-of-transcription-elongation-by-rna-polymerase-ii-go0034243.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034243", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-transcription-elongation-by-rna-polymerase-ii-go0034243.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/snrna-processing-go0016180.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016180", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/snrna-processing-go0016180.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mat89bb-pf10221.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10221", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mat89bb-pf10221.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9NVM9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10221" ], "protein_name": "Integrator complex subunit 13", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8194234cfa7b732ae7aedd759c74b0b0c18402ff69887102a05a58744ddf2f5c", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKIFSESHKTVFVVDHCPYMAESCRQHVEFDMLVKNRTQGIIPLAPISKSLWTCSVESSMEYCRIMYDIFPFKKLVNFIVSDSGAHVLNSWTQEDQNLQELMAALAAVGPPNPRADPECCSILHGLVAAVETLCKITEYQHEARTLLMENAERVGNRGRIICITNAKSDSHVRMLEDCVQETIHEHNKLAANSDHLMQIQKCELVLIHTYPVGEDSLVSDRSKKELSPVLTSEVHSVRAGRHLATKLNILVQQHFDLASTTITNIPMKEEQHANTSANYDVELLHHKDAHVDFLKSGDSHLGGGSREGSFKETITLKWCTPRTNNIELHYCTGAYRISPVDVNSRPSSCLTNFLLNGRSVLLEQPRKSGSKVISHMLSSHGGEIFLHVLSSSRSILEDPPSISEGCGGRVTDYRITDFGEFMRENRLTPFLDPRYKIDGSLEVPLERAKDQLEKHTRYWPMIISQTTIFNMQAVVPLASVIVKESLTEEDVLNCQKTIYNLVDMERKNDPLPISTVGTRGKGPKRDEQYRIMWNELETLVRAHINNSEKHQRVLECLMACRSKPPEEEERKKRGRKREDKEDKSEKAVKDYEQEKSWQDSERLKGILERGKEELAEAEIIKDSPDSPEPPNKKPLVEMDETPQVEKSKGPVSLLSLWSNRINTANSRKHQEFAGRLNSVNNRAELYQHLKEENGMETTENGKASRQ", "sequence_length": 706, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8194234cfa7b732ae7aedd759c74b0b0c18402ff69887102a05a58744ddf2f5c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NVM9.json", "taxon_id": "9606", "uniprot_accession": "Q9NVM9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/intac-complex-go0160232.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/intac-complex-go0160232.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/integrator-complex-go0032039.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032039", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/integrator-complex-go0032039.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/oocyte-nucleus-localization-involved-in-oocyte-dorsal-ventral-axis-specification-go0051663.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051663", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/oocyte-nucleus-localization-involved-in-oocyte-dorsal-ventral-axis-specification-go0051663.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/posterior-mrna-localization-involved-in-anterior-posterior-axis-specification-go0060814.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0060814", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/posterior-mrna-localization-involved-in-anterior-posterior-axis-specification-go0060814.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-fertilization-go0080154.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0080154", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-fertilization-go0080154.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/rna-polymerase-ii-transcription-initiation-surveillance-go0160240.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160240", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/rna-polymerase-ii-transcription-initiation-surveillance-go0160240.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/snrna-3-end-processing-go0034472.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034472", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/snrna-3-end-processing-go0034472.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mat89bb-pf10221.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10221", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mat89bb-pf10221.yaml" } ], "pfam_ids": [ "PF10221" ], "protein_name": "Protein asunder", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFERNQKTIFVLDHTRYFSIASEEYISMDFLKGKPSADGGATGAAGNATGSGGSQFSKSLWTCACESSIEYCRVVWDLFPGKKHVRFIVSDTAAHIVNTWRPSTQNMAHVMNAMLIVGVPSRNVPTSSDYSVIHGLRAAIEALAEPTDEQLAAMADFGTDELPRIPNKGRVICITSARDNTSMKSLEDIFNTVLVQQNTLAAPPSKKGLVIDHCHLVILNIVPLGVESLVTNRSLLKISPLLDVEIHTVSAPDISYKLTHLILNHYDLASTTVTNIPMKEEQNANSSANYDVEILHSRRAHSITCGPDFSLPTSIKQGATYETVTLKWCTPRGCGSADLQPCLGQFLVTPVDVTSRPSSCLINFLLNGRSVLLEMPRKTGSKATSHMLSARGGEIFVHSLCITRSCMDEAPSITDGPGGRVSDYRTAELGQLIKMSRVVPLKVKDPSAPPLTRRLPRYFPLTTSSSILFHLQRHISWLPHFLHLLVKEDMDKQDEVRCQQHIHELYKSASRGDVLPFTHTNGARLKLSKAKDQYRLLYRELEQLIQLNATTMHHKNLLESLQSLRAAYGDAPLKSEPGASLLRTYTESPLSPERLEPISSVGASGSSSSNSLLKASKRRMSSCGQRSLLDIISSAERSQSNKRLDFSGRLCTPLGQVAKLYPDFGTKDKDTVTTGASITPNVKEESVRS", "sequence_length": 689, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2cdc3a82e5b3e3f335534555f74eaa183fce35d0d8871beb6dadc230ba8ee6e6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VEX5.json", "taxon_id": "7227", "uniprot_accession": "Q9VEX5", "uniprot_release": "2026_03" } ], "pfam_id": "PF10221", "short_name": "Mat89Bb", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2152-pf10222.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10222", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2152-pf10222.yaml" } ], "pfam_ids": [ "PF10222" ], "protein_name": "Uncharacterized protein KIAA2013 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWLQQRLKGLPGLLSSSWARRLLCLLGLLVLLLWFAGSGARRAAGGLQLLPWPHGEPGAAEPSACLEAATHAWRSLRERGEAVLLGPGVPSLVANGFLALDVVANRLWVTPGEREPAVAPDFVPFVQLRPLSALPEAGESVLLLREGLLRRVRCLQLGTSGPGPAAAGPGPASASGLLTGSGRDCVLLQEDFLAHRGRPHVYLQRIQLNNPTERVAALQTVGPTAGPAPRAFTSTLEKVGDHQFLLYSGRSPPVPTGLVHLVVVAAKKLVDRLQVAPRTQLDETVLWVVHVSGPLNPQVLKSKAAKELKVLQDLARKEMLELLEMPAAELLQDHQRLWAQLFSPGVEMKKITDAHTPSGLTVNLTLYYMLSCSPAPLLSPDLSHRERDQMESTLNYEDHCFSGHATMHAENLWPGRLSSVQQILQLWDLWRLTLQKRGCKGLVRAGAPGILQGMVLSFGGLQFTENHLQFQADPDVLHNSYALHGIRYKNDHINLAVLADAEGKPYLHVSVESRGQLVKIYACEAGCLDEPVELTSAPQGHTFSVMVTQPITPLLYISTDLTHLQDLRHTLHLKAILAHDEHMAQQDPGLPFLFWFSVASLITLFHLFLFKLIYNEYCGPGAKPFFRNKEDPSV", "sequence_length": 634, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "399566a21d30b99a24371f26d55dd41db3f8df450470200e1089c8b014851f2c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2KHV9.json", "taxon_id": "9913", "uniprot_accession": "Q2KHV9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2152-pf10222.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10222", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2152-pf10222.yaml" } ], "pfam_ids": [ "PF10222" ], "protein_name": "Uncharacterized protein KIAA2013", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWLQQRLKGLPGLLSSSWARRLLCLLGLLLLLLWFGGSGARRAAGGLHLLPWSRGEPGAAEPSACLEAATRAWRGLRERGEVVPLGPGVPALVANGFLALDVAANRLWVTPGEREPAVAPDFVPFVQLRPLSALAEAGEAVLLLREGLLRRVRCLQLGSPGPGPVAAGPGPASVSGLAAGSGRDCVLLQEDFLAHRGRPHVYLQRIQLNNPTERVAALQTVGPTAGPAPKAFTSTLEKVGDHQFLLYSGRSPPTPTGLVHLVVVAAKKLVNRLQVAPKTQLDETVLWVVHVSGPINPQVLKSKAAKELKALQDLARKEMLELLDMPAAELLQDHQLLWAQLFSPGVEMKKITDTHTPSGLTVNLTLYYMLSCSPAPLLSPSLSHRERDQMESTLNYEDHCFSGHATMHAENLWPGRLSSVQQILQLSDLWRLTLQKRGCKGLVKVGAPGILQGMVLSFGGLQFTENHLQFQADPDVLHNSYALHGIRYKNDHINLAVLADAEGKPYLHVSVESRGQPVKIYACKAGCLDEPVELTSAPTGHTFSVMVTQPITPLLYISTDLTHLQDLRHTLHLKAILAHDEHMAQQDPGLPFLFWFSVASLITLFHLFLFKLIYNEYCGPGAKPLFRSKEDPSV", "sequence_length": 634, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cd7c0259af8a16a2e1e3e813a8e3116c0e516716db7ca007277d89d9cef0744a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IYS2.json", "taxon_id": "9606", "uniprot_accession": "Q8IYS2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2152-pf10222.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10222", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2152-pf10222.yaml" } ], "pfam_ids": [ "PF10222" ], "protein_name": "Uncharacterized protein KIAA2013", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWLQQRLKGLPGLLSSSWARRLLCLLGLLVLLLWFASSGARRAAGGLHLPSWARSEPGAAEPSACLEAATRAWRGLRDRGEAVPLGPGVPALVANGFLALDASNNRLWVTPGEREPAVTPDFVPFVQLRPLNVVAEAGEAVLLLREGLLRRVRCLQLGTPGSGPAAGVPGPASASGLSAGSGRDCVLLQEDFLAHRGRPHVYLQRIQLNNPTERVAALQTVGPTAGPVPKSFTSTLEKVGDHQFLLYSGRSTPLPSGLVHLVVVTSKKLVNRLQVAPKTQLDETVLWVVHISGPIHPQVLKSKGAKELKALQDLARKEMLELLEMPASELLQDHQYLWAQLFSPGVEMKRITDAHTPSGLTVNLTLYYMLSCSPAPLLSPSLSHREREQMEATLNYEDHCFSGHATMHAENLWPGQLSSVQQILQLADLWKLTLQKRGCKGLVKVGAPGILQGMVLSFGGLQFTENHLQFQADPEVLHNSYALHGIRYKNDHINLAVLVDAEGKPYLHVSLESRGQPVKIYACEAGCLHDPVELTSEPGGHTFSVMVTQPITPLLYISTDLTHLQDLRHTLHLKAILAHDEHMAQQDPGLPFLFWFSVASLITLFHLFLFKLIYNEYCGPGAKPLFRSKEDPSV", "sequence_length": 634, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d92a99db5289f1736b2229dd1af954d7022b9729f991b0b7140d92b319abd6e0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91X21.json", "taxon_id": "10090", "uniprot_accession": "Q91X21", "uniprot_release": "2026_03" } ], "pfam_id": "PF10222", "short_name": "DUF2152", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/menorin-like-domain-ipr019356.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/menorin-like-domain-ipr019356.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/menorin-n-pf10223.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10223", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/menorin-n-pf10223.yaml" } ], "pfam_ids": [ "PF10223" ], "protein_name": "Protein FAM151B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAACAGGPGSWSENILKYFLRNNQITAEDGAEILWSHAANHKSQMNEALKSAAHMIEADVLLPSDGSEHGQPIMAHPPETSSDNTLQEWLAEVVKSNKGIKLDFKSLAAVRASMLFLDNMKQHLQRPVWINADILPGPNGSSKVVDAKAFLDTVTSFFPDVTFSLGWTTGWHPEKVNEGYSWSMVKEMDYICSELTQPVTFPVRAALVRQSCPQLLWLLTKSNRYSLTVWTGKDDIYSTEDLLYIRDYFNKTQVFYDISEPQNHEFKQAIGIRGHSLRI", "sequence_length": 279, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c6fc79fa07e2c39ffc4e9347c5a6c85d2fbfa3e6269fc9d493190c887436a99e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D3YUE4.json", "taxon_id": "10090", "uniprot_accession": "D3YUE4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-dendrite-extension-go1903859.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1903859", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-dendrite-extension-go1903859.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/menorin-c-terminal-domain-ipr057489.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057489", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/menorin-c-terminal-domain-ipr057489.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/menorin-like-domain-ipr019356.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/menorin-like-domain-ipr019356.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/menorin-c-pf25161.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25161", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/menorin-c-pf25161.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/menorin-n-pf10223.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10223", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/menorin-n-pf10223.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O45879", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10223", "PF25161" ], "protein_name": "Menorin", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "49d600179653f23ebac9c1cc66f37f0900011eb732dbb477ac04d466c9eab48f", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MMISILLVFAVSTAYCRDYGREMRATRMSVVDFWKNETKGDGLNVRVAHGVNSWPDLVDQLHEPFLNKSMMIEGDVFMQAHRRPRHRAVPVMKADTKLADRITFKEWLREVATMNKAIKINFRSNEVVRPVLQDLYASQADPTSPVLQYPVILHANVFRSPRSVETEVDPSTFVEKAKDLFPDATLSLGWTKQSNFSHLHPKFKKLSWRQLFHILEYISRLDQPVMLSVRLSVAAHSKEQLLWLLGMDQSISLLLWSDAEDHVTNWTPIVELRRSTTKNRILYDLDPKHRKFLQTDSNEPIATPPTFSLQDWQAVEFSSSGSQLSTVVRSEKGPAFLGEPTALLLSKIPPPNFPSEQKISGKVHFLPKKGMENVDLDENSGVSIYLMDKVQDIDSPKIKNSLEVFIGFDGKIKITNGQLKNLPYYETKSVGQLPDSDCYGFEVTDMGWRVKLDAWTAECGNQKLRKRRTVSIELDTPFQKNRHLRNVVVSKKGDSAVDFLLEELQHKNAYNYRNPWITVVSTILLMIYLL", "sequence_length": 530, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "49d600179653f23ebac9c1cc66f37f0900011eb732dbb477ac04d466c9eab48f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O45879.json", "taxon_id": "6239", "uniprot_accession": "O45879", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/menorin-like-domain-ipr019356.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/menorin-like-domain-ipr019356.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/menorin-n-pf10223.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10223", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/menorin-n-pf10223.yaml" } ], "pfam_ids": [ "PF10223" ], "protein_name": "Protein FAM151B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAASAGGPGSWSENILEYFLRNSQITAEDGAEITWYHAANHKAQTNEALKSTAHMIEADVLLPSDGSEHSQPIMAHPPETNSDNTLQEWLTEVMKSNKGIKLDFKSLAVVEPSMMLLENVKRHLKRPVWINADILPGPNGNSKVIDAKPFLDTVISFFPDVTFSLGWTTGWHPEKVNEGYSWTMVKEMEYICNELSQPVTFPVRAALVRQSCSQLLWLLKKSNRYSLTIWTGKNDNYSVEDLLYIRDHFDKKQVFYDILEPQNHEFKQAIGIKVNL", "sequence_length": 276, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "82f3998844f88b8c9c8c5235bde03f60e474a1b23797b202cdeb34ee585e437f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6UXP7.json", "taxon_id": "9606", "uniprot_accession": "Q6UXP7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/menorin-like-domain-ipr019356.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/menorin-like-domain-ipr019356.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/menorin-n-pf10223.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10223", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/menorin-n-pf10223.yaml" } ], "pfam_ids": [ "PF10223" ], "protein_name": "Protein FAM151A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSCKKWCSSSQAKWILAGSVTVTLVLAISLILGLTLHQGTQPGCENDAICGPDADMLDYLMGMGQISHRDGLLVTWYHAANSKKEMAAALNSDVMVLEADVTVEGFNTANETKVPIMAHPPAIYSDNTLQEWLEAVLASSQKGIKLDFKSLKAVGPSLDLLRQLTEAGRIRRPVWINADILRGPNVPISIEINATQFLTLVQEKYPKATISPGFTTLYVPQLPNSTYTQAMVETMQELVGALPQKVTFPVRAVMTRAAWPHFSWLLSQSERYSLTLWQGASDPVSVEDLLFIRDNSAAHQIYYDLFEPVLSQFKQLALNTTRKRTYYTGGSLIPLLQQPKGDGLEVEWLVLEVNGSGRRAAITVPDREGMILLDIGLQEPEAGNPVPILHTPGGPALTLESCLLRLAVHPRRWGIHVNIVEPEALRPSLATLAHLSTLGHLPWPVWVGSTVSHGSFVVPGHIAGRELLTAVAEVFPHVTVAPGWPEEMLDSGYQEQMVTDMLELCQGLRQPVSFQLQAGPLSQSPANTVARLLASSPRATVTVYHSTAGNSHVDLWAGLWAARAVDRTRVYYRISQEYWKDLQADVSSNRPSSRIGPSSVEGFPGESR", "sequence_length": 608, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5a36418ee62f730ff02c7e5b3ef82c8a569267744f5439539bb892b9c0159b80", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8QZW3.json", "taxon_id": "10090", "uniprot_accession": "Q8QZW3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/menorin-like-domain-ipr019356.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/menorin-like-domain-ipr019356.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/menorin-n-pf10223.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10223", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/menorin-n-pf10223.yaml" } ], "pfam_ids": [ "PF10223" ], "protein_name": "Protein FAM151A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVCREQLSKNQVKWVFAGITCVSVVVIAAIVLAITLRRPGCELEACSPDADMLDYLLSLGQISRRDALEVTWYHAANSKKAMTAALNSNITVLEADVNVEGLGTANETGVPIMAHPPTIYSDNTLEQWLDAVLGSSQKGIKLDFKNIKAVGPSLDLLRQLTEEGKVRRPIWINADILKGPNMLISTEVNATQFLALVQEKYPKATLSPGWTTFYMSTSPNRTYTQAMVEKMHELVGGVPQRVTFPVRSSMVRAAWPHFSWLLSQSERYSLTLWQAASDPMSVEDLLYVRDNTAVHQVYYDIFEPLLSQFKQLALNATRKPMYYTGGSLIPLLQLPGDDGLNVEWLVPDVQGSGKTATMTLPDTEGMILLNTGLEGTVAENPVPIVHTPSGNILTLESCLQQLATHPGHWGIHLQIAEPAALRPSLALLARLSSLGLLHWPVWVGAKISHGSFSVPGHVAGRELLTAVAEVFPHVTVAPGWPEEVLGSGYREQLLTDMLELCQGLWQPVSFQMQAMLLGHSTAGAIGRLLASSPRATVTVEHNPAGGDYASVRTALLAARAVDRTRVYYRLPQGYHKDLLAHVGRN", "sequence_length": 585, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "be796bff9e17602da9f26daffe1eaf56af7dd4a67a85408a634176455521eae4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WW52.json", "taxon_id": "9606", "uniprot_accession": "Q8WW52", "uniprot_release": "2026_03" } ], "pfam_id": "PF10223", "short_name": "Menorin_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2205-pf10224.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10224", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2205-pf10224.yaml" } ], "pfam_ids": [ "PF10224" ], "protein_name": "Short coiled-coil protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDGLNTGEEEDSAFTSISLTDDTDHSLKSLHSGAERLFPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK", "sequence_length": 122, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b85470c73cb43ba26db2dbd2c9e6906838ae30f9dcb0b7ac4d9a7e632ff2df73", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5RJZ6.json", "taxon_id": "10116", "uniprot_accession": "Q5RJZ6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2205-pf10224.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10224", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2205-pf10224.yaml" } ], "pfam_ids": [ "PF10224" ], "protein_name": "Short coiled-coil protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKMDGLSTGEEEDSTFTSISLEDDTDHSLKSWRSRAESLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK", "sequence_length": 125, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e7b49b0f9e50a70cfa61da2999f1cbf25bdbbb479f2bd6c30d39460e436988d2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q78YZ6.json", "taxon_id": "10090", "uniprot_accession": "Q78YZ6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2205-pf10224.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10224", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2205-pf10224.yaml" } ], "pfam_ids": [ "PF10224" ], "protein_name": "Short coiled-coil protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAEDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK", "sequence_length": 159, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "657b9e21c8c600a2f1606c78bd49ddc612999730982a6774e480da94669669b1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UIL1.json", "taxon_id": "9606", "uniprot_accession": "Q9UIL1", "uniprot_release": "2026_03" } ], "pfam_id": "PF10224", "short_name": "DUF2205", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nemp-pf10225.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nemp-pf10225.yaml" } ], "pfam_ids": [ "PF10225" ], "protein_name": "Nuclear envelope integral membrane protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGPRQGRWWLLLWLPPLATLPVRGEAAAAALSVRRCKALKEKDLIRTSESDCYCYNQNSQVEWKYIWSTMQVKITSPGLFRIVYIAERHNCQYPENILSFIKCVIHNFWIPKESNEITIIINPYRETVCFSVEPVKKIFNYMIHVNRNIMDFKLFLVFVAGVFLFFYARTLSQSPTFYYSSGTVLGVLMTLVFVLLLVKRFIPKYSTFWALMVGCWFASVYIVCQLMEDLKWLWYENRIYVLGYVLIVGFFSFVVCYKHGPLADDRSRSLLMWMLRLLSLVLVYAGVAVPQFAYAAIILLMSSWSLHYPLRACSYMRWKMEQWFTSKELVVKYLTEDEYREQADAETNSALEELRRACRKPDFPSWLVVSRLHTPSKFADFVLGGSHLSPEEISLHEEQYGLGGAFLEEQLFNPSTA", "sequence_length": 417, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "55fdf1bc3583c162d61afab7f32d58acd1ae895499f29aac836f5cff94b98a4d", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/A6NFY4.json", "taxon_id": "9606", "uniprot_accession": "A6NFY4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/erythrocyte-enucleation-go0043131.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0043131", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/erythrocyte-enucleation-go0043131.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nemp-pf10225.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nemp-pf10225.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O14524", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10225" ], "protein_name": "Nuclear envelope integral membrane protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "697c3109a5a4f93452d480caeb5f4841a29112204588fa56a8f077a8da8fb5ac", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAGGMKVAVSPAVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEKRASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEKDTKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLLSRSQIFYYSTGMTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALCTKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSYSRCPAITQNNFLT", "sequence_length": 444, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "697c3109a5a4f93452d480caeb5f4841a29112204588fa56a8f077a8da8fb5ac", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O14524.json", "taxon_id": "9606", "uniprot_accession": "O14524", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nemp-pf10225.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nemp-pf10225.yaml" } ], "pfam_ids": [ "PF10225" ], "protein_name": "Nuclear envelope integral membrane protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRLLTLALLVAGSLAYKFEDCEQKPAALNQVLRVGAKLYSYNLDFFYQKALPYNAIYAFTDVFLQTNLTNADQYQFYQGTNCTTVQQLYDNDNRYFGILRKAALLRSHQLNPFNDTIVGVSTTEPYEISVLIWKVNYFRVGVYVGAIVLFLLASKLVRNVVFYYTSGCSFGLLASLLLVAFIVWRVAPKKTIGVPILIGGWSVSLYMLHFAWSNLQSIMIEYQKYVIGYFATVLLISMAVCYKRGPPTDARSHDIAQWTLQLVALALIYFSVQMVEVSTGTIGALIIQQICRGFLFAGIRWYFVGLKAVWRKFFPARRRLLNEEEYEEQAEKTTKEQLAQLREYCKKEGNRPWKIAGNVRSARRLARFIEGEDDHITEDEIYAHELTGDVLDDEDYDFNEDYGLRTPNESHFDLEDDEDGAEEWDEVVVRRRASEYGRDSVQSVRVPRSVSSRLLSPYQGQNHMNRSLGPGIGFRRDSTPRHGNFQSEHRPRMPRTEQIYRSRRVEYDVKNGRVEGPSSSTASGMTPSEYMRKARRIDATSKTPTRKSRHPTESEDADE", "sequence_length": 559, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6ec6477e7d2cb52456fe3485f192837b6f4b83ede00b46a4ded61037083b12fd", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q19293.json", "taxon_id": "6239", "uniprot_accession": "Q19293", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/erythrocyte-enucleation-go0043131.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0043131", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/erythrocyte-enucleation-go0043131.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nemp-pf10225.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nemp-pf10225.yaml" } ], "pfam_ids": [ "PF10225" ], "protein_name": "Nuclear envelope integral membrane protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGGIKVSVWSAVGPGPRCWGAGGGGGATWLLLVVAGCVVCGSADVNVVMLQESQVDMNSSQQFCYKNVLIPKWHDIWTRIQVRVNSSKLVRVTQVDNEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEMIEKDTTYSVTVTRRFDPKLFLVFLLGLTLFFCGDLLSRSQIFYYSTGMSVGIVASLLIVIFMISKFMPKRSPIYVILVGGWSFSLYLIQLVFKNLQEIWRSYWHYLLSYILTVGFMSFAVCYKYGPLENERSINLLTWTLQLLGLGLMYSSIQIPHVAFALIVIALCTKNLEYPIHWLCSTYRRMCKASGKPVPPRLLTEEEYRIQGEVETQKALQELREFCNSPECSAWKTISRIQSPKRFADFVEGSFHLTPNEVSVHEQEYGLGSIFTQDEELSSEEEGSEYPTFTQNNFLT", "sequence_length": 437, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bbbbccda42a7fad88e84563b674975ecccf4216b2a3fed7d3403dc4a3ebcdad4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZQE4.json", "taxon_id": "10090", "uniprot_accession": "Q6ZQE4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nemp-pf10225.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nemp-pf10225.yaml" } ], "pfam_ids": [ "PF10225" ], "protein_name": "Nuclear envelope integral membrane protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPRLWWLVLWLQPLATLPASAVHDEEAAMSVPRCKSLKETDLIKTSVSDCYCYNQHSQIQWTYMWSTVQVTVTSPGLLNIVYITGSHNCQHTESILSFIKCVTHNFWAPEEAEEITIVFSPYGETVCFSVKPVGRLLPYIVSVSRNIVDFKLFLVFVTGIFLFLYAKTLSQSPVFYYSSGTVLGILMTLVFVLLMAKKHIPKYSTFGALMIGCWFASVYVLCQLMEDLKWLWYGNRMYILGYVVVVGLCSFAACYSHGPLADEGSRDLLMWTLRLFSLALVYTGVAAPQFAYAVLIVLLFSWSLHYLLRAFSYLRWKMRPWFTAEPQVARYLTDDEYREQAEAATARALEELRQACCRPDFPSWLAVSRLQAPKKFAEFVLGASHLSPEEVSTHEKQYGLGGAFLEEQLFSLQTDSLPAS", "sequence_length": 421, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6407f31cd831dabb9449a82af0f0b7749b4eb2d79353f549a23d460ed02048ae", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CB65.json", "taxon_id": "10090", "uniprot_accession": "Q8CB65", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nemp-pf10225.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nemp-pf10225.yaml" } ], "pfam_ids": [ "PF10225" ], "protein_name": "Nuclear envelope integral membrane protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHSAGLLMLTVAGYFTSGIPGNTASSDVAYLTPGTYINLSENILGLQTLRTFCYPGKRLTVSSLFETVEFVLAIGSDDYSQYGGKTPEEVLQHYKDKQSLFSITLFAQKRQLLQLSPFEQQCIGISSRQAYTVILNSIPLDLWRLAQFAVGILILFSARRLAKNSVFYYLVGIVIGICASLLVVIYLAAKLFPRRTMMYGVLIGGWTIGFYVIKQLADNLRLILITYRDHVLGYLVITGLISFLICYRIGPPKNPRSQTIVMWVLQAIGAVMAYFSSWHTSAVIFIMVLVFVAHYFPISWTNQIKFMYRRRFPLKRRMLTQEEYEQQTAVETSKSLADLRKYVNSPECKQWAVMGKLRDPLRFASFANGAPHLDDEEIEDHSRTIEESMDAAPEEESVEEPEEDKPAELLPLPNSQFRYQQAARNSEPEPESESDDSEEEEFFEQEVDLRQVVQ", "sequence_length": 454, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d68da0fd80ca4b1fe431de5ca6a3d3158a360549cf8b3ca1e295b0594ebc33d2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VXD6.json", "taxon_id": "7227", "uniprot_accession": "Q9VXD6", "uniprot_release": "2026_03" } ], "pfam_id": "PF10225", "short_name": "NEMP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/radial-glial-cell-differentiation-go0060019.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0060019", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/radial-glial-cell-differentiation-go0060019.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ccdc85-pf10226.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10226", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ccdc85-pf10226.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:E9Q6B2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10226" ], "protein_name": "Coiled-coil domain-containing protein 85C", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "2ece03b5d218c9b3bc9728cd4bb98c7bd87d839ec962ed73b157be64935d994b", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAKPPAVAAAAAAAASEELSQVPDEELLRWSKEELARRLRRAEGEKVGLMLEHGGLMRDVNRRLQQHLLEIRGLKDVNQRLQDDNQELRELCCFLDDDRQKGRKLAREWQRFGRHAAGAVWHEVARSQQKLRELEARQEALLRENLELKELVLLLDEERAALAAAGGAGGGGGGAGSRSSIDSQASLSGPLAGSAAGSGARDVGDGSSTSSAGSGGSPDHHHHVPAALLPPGPHKVPDGKAGATRRSLDDLSAPPHHRSIPNGLHDPSSTYIRPLETKVKLLDGDKLPPQQAGSGEFRTLRKGFSPYHSESQLASLPPSYQEVLQNGPACPVPELPSPPSTVYSSAGQKPEAVVHAMKVLEVHENLDRQLQDSCEEDLSEKEKAIVREMCNVVWRKLGDAASTKPSIRQHLSGNQFKGPL", "sequence_length": 420, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2ece03b5d218c9b3bc9728cd4bb98c7bd87d839ec962ed73b157be64935d994b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E9Q6B2.json", "taxon_id": "10090", "uniprot_accession": "E9Q6B2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ccdc85-pf10226.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10226", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ccdc85-pf10226.yaml" } ], "pfam_ids": [ "PF10226" ], "protein_name": "Coiled-coil domain-containing protein 85B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAEAGGLEELTDEEMAALGKEELVRRLRREEAARLAALVQRGRLMQEVNRQLQGHLGEIRELKQLNRRLQAENRELRDLCCFLDSERQRGRRAARQWQLFGTQASRAVREDLGGCWQKLAELEGRQEELLRENLALKELCLALGEEWGPRGGPSGAGGSGAGPAPELALPPCGPRDLGDGSSSTGSVGSPDQLPLACSPDD", "sequence_length": 202, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6a8ff7ec34a0013910a50682281404cd2bfbf4ceef4572cf790ac097fc8a85ae", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q15834.json", "taxon_id": "9606", "uniprot_accession": "Q15834", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ccdc85-pf10226.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10226", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ccdc85-pf10226.yaml" } ], "pfam_ids": [ "PF10226" ], "protein_name": "Coiled-coil domain-containing protein 85B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAEAGGLEELTDEEMAALGKEELVRRLRREEAARLAALVQRGRLMQEVNRQLQGHLGEIRELKQLNRRLQAENRELRDLCCFLDSERQRGRRAARQWQLFGTQASRAVREDLGGCWQKLAELEGRQEELLRENLALKELCLALGEEWGPRGGPGGAVGSGAGPTPELALPPCGPRDLGDGSSSTGSVGSPDQLPLACSPDD", "sequence_length": 202, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cfceefd1bbe21320aac2e681151df07cc219789d2726d72614bb7c83738f9533", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PDY0.json", "taxon_id": "10090", "uniprot_accession": "Q6PDY0", "uniprot_release": "2026_03" } ], "pfam_id": "PF10226", "short_name": "CCDC85", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hpf1-pf10228.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hpf1-pf10228.yaml" } ], "pfam_ids": [ "PF10228" ], "protein_name": "Histone PARylation factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGRGKRKPRSLPQTETPNGEVKKAKEGLKDDKTSVGEEMREEVERLYKLRMPDDFFQFWDFCEGLNADCPQDALKNTLGLQLVGPFDILSKKHKNSSSQPNFHLHWRYFYDPPEFQTIIQGNADTQHHMGYFRDLPDALPVFIGENEAKKGYTITQLGDNIFAAVLLFLQKKKKEKRQQKDDAALNRLEEDLKREAERLGLPLEQKTKSMKQRERKVVTKTFHGAGIVVPVDKNDVGYRELPESDASLKKICKAIAEAKDDEERMKAFAPIQEMITFVQFANDECDYGMGYELGIDLFCYGSHYFFKVVRQLLPMAYNLLKRGLFGEILEAHLASRSQDNLDQLAAV", "sequence_length": 348, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c7411d6d65f20c2e852970b4b17f785f1a3207a5718ff96c8ea355db4a59cf7d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q7SXS8.json", "taxon_id": "7955", "uniprot_accession": "Q7SXS8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/protein-adp-ribosyltransferase-substrate-adaptor-activity-go0140768.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140768", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/protein-adp-ribosyltransferase-substrate-adaptor-activity-go0140768.yaml" } ], "pfam_ids": [ "PF10228" ], "protein_name": "Histone PARylation factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVGGGGKRRTAGAGPQCEKTVEVKKSKFSEADVSSDLRKEVENLYKLSLPEDFYHFWKFCEELDPEKPADALATSLGLRLVGPYDILAGKHKMKKKPTGLNCNLHWRFYYDPPEFQTIIIGDNKTQYHMGYFRDSPDELPVYVGTNEAKKNCIIIQNGDNVFAAIKLFLMKKLKEVTDRKKISILKNIDEKLTEAARKLGYSLEQRTVKMRQRDKKVVTKTFHGAGLVVPVDKNDVGYRELPETDADLKRICKAVVDAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCYGSHYFHKVAGQLLPLAYNLLKRDLFAKIIEDHLASRSEENIDQLAG", "sequence_length": 346, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3b22243fc2b0db4a711359f8161396afb018815d0137be0c0c5fea1c9fc72fcc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CFE2.json", "taxon_id": "10090", "uniprot_accession": "Q8CFE2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/protein-adp-ribosyltransferase-substrate-adaptor-activity-go0140768.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140768", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/protein-adp-ribosyltransferase-substrate-adaptor-activity-go0140768.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-protein-adp-ribosylation-go0010835.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010835", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-protein-adp-ribosylation-go0010835.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hpf1-pf10228.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hpf1-pf10228.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9NWY4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10228" ], "protein_name": "Histone PARylation factor 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6d9e8794127f0e4b9bfaff3fefc528bba957bad447f348a4cea87c6a10929f13", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVGGGGKRRPGGEGPQCEKTTDVKKSKFCEADVSSDLRKEVENHYKLSLPEDFYHFWKFCEELDPEKPSDSLSASLGLQLVGPYDILAGKHKTKKKSTGLNFNLHWRFYYDPPEFQTIIIGDNKTQYHMGYFRDSPDEFPVYVGINEAKKNCIIVPNGDNVFAAVKLFLTKKLREITDKKKINLLKNIDEKLTEAARELGYSLEQRTVKMKQRDKKVVTKTFHGAGLVVPVDKNDVGYRELPETDADLKRICKTIVEAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCYGSHYFHKVAGQLLPLAYNLLKRNLFAEIIEEHLANRSQENIDQLAA", "sequence_length": 346, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6d9e8794127f0e4b9bfaff3fefc528bba957bad447f348a4cea87c6a10929f13", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NWY4.json", "taxon_id": "9606", "uniprot_accession": "Q9NWY4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/aprataxin-and-pnk-like-factor-pbz-domain-ipr019406.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019406", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/aprataxin-and-pnk-like-factor-pbz-domain-ipr019406.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hpf1-pf10228.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hpf1-pf10228.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zf-cchh-pf10283.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10283", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-cchh-pf10283.yaml" } ], "pfam_ids": [ "PF10228", "PF10283" ], "protein_name": "Histone PARylation factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKEDCKYWDKCYQQNPAHLSKYNHPKKQQEHEVDGAEGKKVAPKRSASSQSGEQKKEEQTEPVNKDKSNTSASSTEMVNKDTAKGSYEAETEELHKEAMSNISGKNYMEILEKRIRLSVQKEYDNLCESNEFIRHKFLVEMPPDFYEFWKFVGSLKIDPAKPKDAGLEHLDKVFQLQLVGPFEFLAGKFHGAKLGEPGDYLRHWRFYYDPPEFQTIFVRRGTGIHYGYWRDVPQDKENLLIARNDSAKGCQFQFVAGNAFDAFLYYLEHDFAATPFSCGQLAGTKKAVAKYLSDNSLELAQLDRLQRERNKRVVAKTFHRAGIVVPFDQKTEVGYRPLAVSDSELKKMLAMLERKDVDNGAAKQAVLEKLQPVANAANIAVDESDFGSALELGIDMFCSGHKELHMLASSLLVPAYSMLSRPQFIAIAKAHMEQRSREDNLSIFDVLK", "sequence_length": 449, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1b7780bd2d3729368b90d36679f14e93c3c7da50d872545b15d3557238dd570d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VNI3.json", "taxon_id": "7227", "uniprot_accession": "Q9VNI3", "uniprot_release": "2026_03" } ], "pfam_id": "PF10228", "short_name": "HPF1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mmadhc-pf10229.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mmadhc-pf10229.yaml" } ], "pfam_ids": [ "PF10229" ], "protein_name": "Cobalamin trafficking protein CblD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAHVLCNRARLVSYLPGFCSLVKRVINPRAFSTAGSSGSDESHVATAPPDICSRTVWPDETMGPFGPQDQRFQLPGNIGFDCHLNGTASQKKSQAHKTLPDVLAEPLSTERHEFVMAQYVNEFQDSDAPVEQEINSAETYFESAKVECAIQTCPELLRRDFESLFPEVANSKLMILTVTQKTENDMTVWSEEVEVEREVLLEKFISGAKEICYALRAEGYWADFIDPSSGVAFFGPYTNNTLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVVVGSIFTNATADSSIMRKLSGN", "sequence_length": 296, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ff66818306336841d3935315300f848b1b9698ceb375e8c94d37e2cf752673b0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q99LS1.json", "taxon_id": "10090", "uniprot_accession": "Q99LS1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mmadhc-pf10229.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mmadhc-pf10229.yaml" } ], "pfam_ids": [ "PF10229" ], "protein_name": "Cobalamin trafficking protein CblD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANVLCNRARLVSYLPGFCSLVKRVVNPKAFSTAGSSGSDESHVAAAPPDICSRTVWPDETMGPFGPQDQRFQLPGNIGFDCHLNGTASQKKSLVHKTLPDVLAEPLSSERHEFVMAQYVNEFQGNDAPVEQEINSAETYFESARVECAIQTCPELLRKDFESLFPEVANGKLMILTVTQKTKNDMTVWSEEVEIEREVLLEKFINGAKEICYALRAEGYWADFIDPSSGLAFFGPYTNNTLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVVVGSIFTNATPDSHIMKKLSGN", "sequence_length": 296, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c68db1df797313e84aa3ffb40346125155ef78b54b68fb5f2f09ca482dfb0ae2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H3L0.json", "taxon_id": "9606", "uniprot_accession": "Q9H3L0", "uniprot_release": "2026_03" } ], "pfam_id": "PF10229", "short_name": "MMADHC", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/lidhydrolase-pf10230.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10230", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/lidhydrolase-pf10230.yaml" } ], "pfam_ids": [ "PF10230" ], "protein_name": "Lipid droplet-associated triacylglycerol lipase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVKEYTKSKLPCSILNIKPTVTKSGEDAPLLVWIPGNPGLLYYYQEMLHHLHLKHPDWEILGISHAGMTLNAHSNTPIFSLQDQVDHQVEVINNFSCKNRKIIIMGHSVGAYIVQKVCLSNKLVGSVQKVGLVTPTVMDIHTSEMGIKMTAALRYIPPLAHVVSLFSYIFFYWILSEGFSRFIIDKFMGCGSTGYQAVLSTRIFLTHRQFVRQSLGLAAQEMEEITTNWEFQDRFINYCEENGISIWFLFSSNDHWVSGKTRSHLSDYYKDKVKQERLKIDVTDKIPHSFVVKHAEYAINAFF", "sequence_length": 304, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c04ae5fd7e124cfadbbf95efc0f859745bde33d86b30541288f387230f90920a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06522.json", "taxon_id": "559292", "uniprot_accession": "Q06522", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/foam-cell-differentiation-go0090077.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090077", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/foam-cell-differentiation-go0090077.yaml" } ], "pfam_ids": [ "PF10230" ], "protein_name": "Lipid droplet-associated hydrolase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASEVEEQIPVREEFFLCGGVETKIIKCGPWTNLFEKQDVSKPKQLIFIIPGNPGYSAFYVPFAKALYTLMKSRFPVWIISHAGFSVTPKDKKVLAAPQEESNAQKIEDVYGLNGQIEHKIAFLRAHVPKDVKLILIGHSVGTYMTLHVMKRVLELPVAHAFLLFPTIERMSESPNGKFATPFLCQFRYLLYATSYLLFKPCPEVIKSFIIQKLMGQMNIKLELPLTDILQPFCLANAAYLGSQEMVQIVKRDDDIIKEFLPKLKFYYGKTDGWCPVKYYEDMKKDFPEGNIYLCEKGIPHAFVLDFSQEMATIVAEWINNRPPRK", "sequence_length": 326, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "08f5e98f0f16fc4918f52b30132cbc400ffc43da49d1119daecb06e92421fe99", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BVA5.json", "taxon_id": "10090", "uniprot_accession": "Q8BVA5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/lidhydrolase-pf10230.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10230", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/lidhydrolase-pf10230.yaml" } ], "pfam_ids": [ "PF10230" ], "protein_name": "Lipid droplet-associated hydrolase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSELKEEIPVHEEFILCGGAETQVLKCGPWTDLFHDQSVKRPKLLIFIIPGNPGFSAFYVPFAKALYSLTNRRFPVWTISHAGHALAPKDKKILTTSEDSNAQEIKDIYGLNGQIEHKLAFLRTHVPKDMKLVLIGHSIGSYFTLQMLKRVPELPVIRAFLLFPTIERMSESPNGRIATPLLCWFRYVLYVTGYLLLKPCPETIKSLLIRRGLQVMNLENEFSPLNILEPFCLANAAYLGGQEMMEVVKRDDETIKEHLCKLTFYYGTIDPWCPKEYYEDIKKDFPEGDIRLCEKNIPHAFITHFNQEMADMIADSLKDDLSKM", "sequence_length": 325, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "549d310f8044e9fa3ac378b8dadae883728b6c9d464cc56c55264b95b27dd362", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H6V9.json", "taxon_id": "9606", "uniprot_accession": "Q9H6V9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-juvenile-hormone-metabolic-process-go0045928.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0045928", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-juvenile-hormone-metabolic-process-go0045928.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/triglyceride-storage-go0030730.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030730", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/triglyceride-storage-go0030730.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/lidhydrolase-pf10230.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10230", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/lidhydrolase-pf10230.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9W0H3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10230" ], "protein_name": "Lipid droplet-associated hydrolase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3c943c28d7bac88b07b33f301414617abc5c8b2ede98aa152357fc590c562c5c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQEAYVNINSIPTHIFTWGRWIEETITEKEIVICITGNPGLPGFYTEFAGTLQKELGDLPVWVIGHAGHDDPPEASIREVPQLSGNEELFNLDGQIRHKIAFIEKYVPSDVKIHLIGHSIGAWMILQLLENERIRSRIQKCYMLFPTVERMMESPNGWVFTKVAMPLYSVFGYIFFSFFNFLPVWLRLMLIQIYFLIFSIPRQFLGTALKYSKPSVAEKVVFLADDEMARVRGIQREIVEQNLDLLKFYYGTTDGWVPISYYDQLKKDYPKVDAQLDTKKIDHAFVLRHSQPMAVIVRDMIQQHRRV", "sequence_length": 307, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3c943c28d7bac88b07b33f301414617abc5c8b2ede98aa152357fc590c562c5c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9W0H3.json", "taxon_id": "7227", "uniprot_accession": "Q9W0H3", "uniprot_release": "2026_03" } ], "pfam_id": "PF10230", "short_name": "LIDHydrolase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/coa8-pf10231.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/coa8-pf10231.yaml" } ], "pfam_ids": [ "PF10231" ], "protein_name": "Cytochrome c oxidase assembly factor 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPRRPAKRLVTALCRAFSGRGCQLAPKRGAERRDAAPSRVSRFCPPRKSRHDWIGPPDKYSNLRPIHFYIPENESPLEQKLRELRQETQEWNQQFWADQNLTFHKEKEEFVRSRLKAKGLDLRTASGQKATLNAEEMAEFYKEFLSKNFQKHMYYNRDWYKRNFAITFFMGKVALERIWNKLRPKQKKTSS", "sequence_length": 192, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "251e969af878e1d0c46ff80a1b51b0703fc4393e0c41010fd96399c173f643dd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q148E1.json", "taxon_id": "9913", "uniprot_accession": "Q148E1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/matrix-side-of-mitochondrial-inner-membrane-go0099617.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0099617", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/matrix-side-of-mitochondrial-inner-membrane-go0099617.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/coa8-pf10231.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/coa8-pf10231.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q96IL0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10231" ], "protein_name": "Cytochrome c oxidase assembly factor 8", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "43ac9340abeb896dcdd78310ca83ae8395b7f75298e3cb958aba699fe5a88847", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLPCAAGARGRGAMVVLRAGKKTFLPPLCRAFACRGCQLAPERGAERRDTAPSGVSRFCPPRKSCHDWIGPPDKYSNLRPVHFYIPENESPLEQKLRKLRQETQEWNQQFWANQNLTFSKEKEEFIHSRLKTKGLGLRTESGQKATLNAEEMADFYKEFLSKNFQKHMYYNRDWYKRNFAITFFMGKVALERIWNKLKQKQKKRSN", "sequence_length": 206, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "43ac9340abeb896dcdd78310ca83ae8395b7f75298e3cb958aba699fe5a88847", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q96IL0.json", "taxon_id": "9606", "uniprot_accession": "Q96IL0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-cytochrome-c-oxidase-activity-go1904960.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1904960", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-cytochrome-c-oxidase-activity-go1904960.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/coa8-pf10231.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/coa8-pf10231.yaml" } ], "pfam_ids": [ "PF10231" ], "protein_name": "Cytochrome c oxidase assembly factor 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAALRPGSRALRRLLCRSFSGGGGVRLARERPTDHRDAASSRVSRFCPPRQSCHDWIGPPDKCSNLRPVHFHIPENESPLEQRLRELRQETQEWNQQFWAKQNLSFNKEKEEFIYSRLQAKGAGLRTESGQRATLDAEEMADFYKDFLSKNFQKHMRYNRDWYKRNFAITFFMGKVVLERMWSKLRQKKTSS", "sequence_length": 192, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a2820f8a2fe8d91e2868d7f0106f10a7e9fb7dd180dca8e8720220975df0e584", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CQW7.json", "taxon_id": "10090", "uniprot_accession": "Q9CQW7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10231", "short_name": "COA8", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2465-pf10239.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2465-pf10239.yaml" } ], "pfam_ids": [ "PF10239" ], "protein_name": "Protein FAM98C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAVKAEAWEGAAVAQDLLALGYGGVPGAASRGASCPDFRGLCVRLAAELATLGALEQQREAGAEVLSAGDGPGAEEDFLRQLGSLLRELHCPDRALCGGDGAAALREPGAGLRLLRFLCSELQATRLLCLRSLLDPSPRPPLGEGVVEGAGMVQELDLTLQALGLPRPAPGTPASQLLQELHAKISELQPSLPPGSLQPLLSCSLDAPRWEALESLSQSLRDQYRCRRCLLLKRLDLTTSAFHWSDRAEAQGEAMRAVLIPIREVLTPESDISIAHVLAARADLSCLVPATSVAVRRGTCCAINKVLMGNVPDRGGRPNELEPPMPTWRSRREDGGPQCWGRKKKKKK", "sequence_length": 349, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4c96f8f6dc001171c8460db3457e722bbf11706b761139b0366f4c010e044993", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q17RN3.json", "taxon_id": "9606", "uniprot_accession": "Q17RN3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2465-pf10239.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2465-pf10239.yaml" } ], "pfam_ids": [ "PF10239" ], "protein_name": "tRNA-splicing ligase complex subunit FAM98B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRGPEPGPQPTMEGDVLDTLEALGYKGPLLEEQALTKAAEGGLSSPEFSELCIWLGSQIKSLCNLEESITSAGRDDLESFQLEISGFLKEMACPYSVLISGDIKDRLKKKEDCLKLLLFLSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKSTTSDIPHMLNQVESKVKDILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCEYECRRRMLMKRLDVTVQSFGWSDRAKVKTDDIARIYQPKRYALSPKTTITMAHLLAAREDLSKIIRTSSGTSREKTACAINKVLMGRVPDRGGRPNEIEPPPPEMPPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGGGGGYRRY", "sequence_length": 433, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "11d99d6f622bb0b64bbf35bd18e97c2f6c738977de1edaafa54dd4038d78cc3b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q52LJ0.json", "taxon_id": "9606", "uniprot_accession": "Q52LJ0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2465-pf10239.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2465-pf10239.yaml" } ], "pfam_ids": [ "PF10239" ], "protein_name": "Protein FAM98A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MECDLMETDILESLEDLGYKGPLLEDGALSQAVSAGASSPEFTKLCAWLVSELRVLCKLEENVQATNSPSEAEEFQLEVSGLLGEMNCPYLSLTSGDVTKRLLIQKNCLLLLTYLISELEAARMLCVNAPPKKAQEGGGSEVFQELKGICIALGMSKPPANITMFQFFSGIEKKLKETLAKVPPNHVGKPLLKKPMGPAHWEKIEAINQAIANEYEVRRKLLIKRLDVTVQSFGWSDRAKSQTEKLAKVYQPKRSVLSPKTTISVAHLLAARQDLSKILRTSSGSIREKTACAINKVLMGRVPDRGGRPNEIEPPPPEMPPWQKRQDGPQQQTGGRGGGRGGYEHSSYGGRGGHEQGGGRGGRGGYDHGGRGGGRGNKHQGGWTDGGSGGGGGYQDGGYRDSGFQPGGYHGGHSSGGYQGGGYGGFQTSSSYTGSGYQGGGYQQDNRYQDGGHHGDRGGGRGGRGGRGGRGGRAGQGGGWGGRGSQNYHQGGQFEQHFQHGGYQYNHSGFGQGRHYTS", "sequence_length": 518, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d4be8de4a91ab1ee6e311abadbad3d465ee1f60d376fc674be90236010a3cc92", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NCA5.json", "taxon_id": "9606", "uniprot_accession": "Q8NCA5", "uniprot_release": "2026_03" } ], "pfam_id": "PF10239", "short_name": "DUF2465", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mabp-pf10240.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10240", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mabp-pf10240.yaml" } ], "pfam_ids": [ "PF02141", "PF03455", "PF03456", "PF10240" ], "protein_name": "DENN domain-containing protein 4C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIEDKGPRVTDYFVVAGLTDTSTLLDQEINRTDTNSIGPKAPITDIAVIIKSAGETVPEGYTCVEATPSALQANLNYGSLKSPELFLCYRRGRDKPPLTDIGVLYEGKERLMPGCEVIQATPYGRCANVNNSSTTSQRIFITYRRAPPVRSQNSLAVTDICVIITSKGETPPHTFCKVDKNLNCGMWGSNVFLCYKKSVPASNAIAYKAGLIFRYPEEDYESFPLSPSVPLFCLPMGATIECWDPQIKYPLPVFSTFVLTGSSAEKVYGAAIQFYEPYSQERLTEKQLTQLGLLTLVEKRVVSKPINSNKCICLLSHWPFFEAFKNFLMFIYKVSVSGPHPLPIEKHISHFMQNIPFPSPQRPRILIQLSVHDAFILSQPVSTPLPLSGANFSSLLMNLGPENCATLLLLVLLESKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAGVLSAPLPFIVGVDSRYFDLHDPPQDVVCIDLDTNTLYVADERKNINWKQLPKRPCKSLLGTLRRLYQQLCSVHRKPQESSAIEMTPIEADYSWQKKMTQLEMEIQETFLRFMASILKGYRSYLRPITEAPSNKATAADSLFDRQGFLKSRDRAYTKFYTLLSKTQIFIRFIEECSFVSDKDTGLAFFDDCIEKLFPDKGVERTEKVDLDSAEDTRLIELDDSQRSEHTVFIMPPEPPPDDGNNLSPQYSYTYFPRLDLKLFDSPQKLKLCFNRHPPGSSITNSPALMAKRTKQEIKTAHKLAKRCYTNPPQWAKYLFSHCYSLWFICLPAYVRVSHPKVRALQQAHDVLVKMRKTDVDPLDEVCYRVVMQLCGLWVNPVLAVRVLFEMKTARIKPNAITYGYYNKVVLESPWPSSTRSGIFLWTKVRNVVHGLAQFRQPLKKTGQKSQVFSISGGQSDQGYGSKDELVKEGADGHAPEEHTPPELTTTELHIEEECDISAIVSKHLQPTPEPQSPTEPPAWGSSIVKVPSGLFDTNNRTSTGSTSTVLFSTQAPVEDAVFSEVTNFKKNGDRGEKKQKHFPERSCSFSSESRAGMLLKKSSLDLNSSEMAIMMGADAKILTAALTCPKTSPPHVTRTHSFENVNCHLADSRTRMSEGTRDSEHRSSPVLEMLEESQELLEPVVGDNVAETAAEMTCNSLQSNSHSDQSRDTQAGAQDPVNKRSSSYATRKAIEREDVETGLDPLSLLATECVEKTSDSEDKLFSPVISRNLADEIESYMNLKSPLGSKSCSMELHGEGNQEPGSPAVFAHPLERSSSLPSDRGPPARDSTETEKSSPAVSSSKTLTGRFKPQSPYRAYKDRSTSLSALVRSSPNSSLGSVVNSLSGLKLDNILSGPKIDVLKSSMKQAATVASKMWVAVASAYSYSDDEEETNKDYSFPAGLEDHHIVGETLSPNTSVSGLVPSELTQSNTSLGSSSSSGDVGKLQCPAGEVPFSRNIKGQDFEKSDHGSSQNTSMSSIYQNCAMEVLMSSCSQCRACGALVYDEEIMAGWTADDSNLNTTCPFCKSNFLPLLNVEFKDLRGSASFFLKPSTSGDSLQSGSIPSASEPSEHKPTSSSAEPDLISFMDFSKHSETITEEASYTVESSDEIKKTNGDVQSVKMSSVPNSLSKRNVSLTRSHSVGGPLQNIDFSQRPFHGVSTVSLPSSLQEDVDHLGKRPSPPPVSVPYLSPLVLRKELESLLENEGDQVIHTSSFINQHPIIFWNLVWYFRRLDLPSNLPGLILTSEHCNGGVQLPLSSLSQDSKLVYIQLLWDNINLHQEPGEPLYVSWRNLNSEKKPSLLSEQQQAASALVETIRQSIQQNDVLKPINLLSQQMKPGTKRQRSLYREILFLSLVSLGRENIDIEAFDNEYGLAYRSLPSESLERLQRIDAPPSISVEWCRKCFGAPLI", "sequence_length": 1906, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f784d0f3d70eea28fc7db04e6541afa34d433ebf08c53e910b5f69b635e5ff19", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6H8H2.json", "taxon_id": "10090", "uniprot_accession": "A6H8H2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mabp-pf10240.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10240", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mabp-pf10240.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5VZ89", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02141", "PF03455", "PF03456", "PF10240" ], "protein_name": "DENN domain-containing protein 4C", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "58f47854c6ab5d5228d696747a5b9ee13fe46ecc9c71998b0e714f65d3b2d792", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MIEDKGPRVTDYFVVAGLTDTSTLLDQEINRLDTKSTGPKAPITDIAIIIKSAGETVPEGYTCVEATPSALQANLNYGSLKSPELFLCYKRGRDKPPLTDIGVLYEGKERLIPGCEVILATPYGRCANVNNSSTTSQRIFITYRRAPPVRPQNSLAVTDICVIVTSKGETPPHTFCKVDKNLNCGMWGSSVFLCYKKSVPASNAIAYKAGLIFRYPEEDYESFPLSESDVPLFCLPMGATIECWDPETKYPLPVFSTFVLTGSSAKKVYGAAIQFYEPYSRELLSEKQLMHLGLLTPVERKMVSKSINTNKCICLLSHWPFFEAFRKFLMFIYKLSVSGPHPLPIEKHISHFMQNIPFPSPQRPRILVQLSVHDALILSQPVSTPLPLSGANFSTLLMNLGPENCATLLLFVLLESKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAAVLSAPLPFIVGVDSRYFDLHDPPQDVVCIDLDTNMLYVSDEKKNMNWKQLPKKPCKNLLSTLKKLYPQLSSVHQKTQEGSAIDMTPIEADFSWQKKMTQLEMEIQEAFLRFMASILKGYRTYLRPITEAPSNKATAADSLFDRQGFLKSRDRAYAKFYTLLSKTQIFIRFIEECSFVSDKDTGLAFFDDCIEKLFPDKGTEKTDKVDFDSAEDTRLIELDDSQKSEHTVFIMPPEPPPDDGKDLSPKYSYKYFPRLDLKLFDRPQELKLCFSRHPTGNSITKSPPLMAKRTKQEIKTAHKLAKRCYTNPPQWAKCLFSHCYSLWFICLPAYVRVSHPKVRALQQAYDVLIKMRKTDVDPLDEVCYRVVMQLCGLWGHPVLAVRVLFEMKTARIKPNAITYGYYNKVVLESPWPSSTRSGIFLWTKVRNVVRGLAQFRQPLKKTVQRSQVSSISGGQSDQGYGSKDELIKDDAEIHVPEEQAARELITKTKMQTEEVCDASAIVAKHSQPSPEPHSPTEPPAWGSSIVKVPSGIFDVNSRKSSTGSISNVLFSTQDPVEDAVFGEATNLKKNGDRGEKRQKHFPERSCSFSSESRAGMLLKKSSLDSNSSEMAIMMGADAKILTAALTCPKTSLLHIARTHSFENVSCHLPDSRTCMSESTWNPEHRSSPVPEMLEESQELLEPVVDDVPKTTATVDTYESLLSDSNSNQSRDLKTVSKDLRNKRSSLYGIAKVVQREDVETGLDPLSLLATECTGGKTPDSEDKLFSPVIARNLADEIESYMNLKSPLGSKSSSMELHREENRESGMTTAFIHALERRSSLPLDHGSPAQENPESEKSSPAVSRSKTFTGRFKQQTPSRTHKERSTSLSALVRSSPHGSLGSVVNSLSGLKLDNILSGPKIDVLKSGMKQAATVASKMWVAVASAYSYSDDEEETNRDYSFPAGLEDHILGENISPNTSISGLVPSELTQSNTSLGSSSSSGDVGKLHYPTGEVPFPRGMKGQDFEKSDHGSSQNTSMSSIYQNCAMEVLMSSCSQCRACGALVYDEEIMAGWTADDSNLNTACPFCKSNFLPLLNIEFKDLRGSASFFLKPSTSGDSLQSGSIPLANESLEHKPVSSLAEPDLINFMDFPKHNQIITEETGSAVEPSDEIKRASGDVQTMKISSVPNSLSKRNVSLTRSHSVGGPLQNIDFTQRPFHGISTVSLPNSLQEVVDPLGKRPNPPPVSVPYLSPLVLRKELESLLENEGDQVIHTSSFINQHPIIFWNLVWYFRRLDLPSNLPGLILTSEHCNEGVQLPLSSLSQDSKLVYIQLLWDNINLHQEPREPLYVSWRNFNSEKKSSLLSEEQQETSTLVETIRQSIQHNNVLKPINLLSQQMKPGMKRQRSLYREILFLSLVSLGRENIDIEAFDNEYGIAYNSLSSEILERLQKIDAPPSASVEWCRKCFGAPLI", "sequence_length": 1909, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "58f47854c6ab5d5228d696747a5b9ee13fe46ecc9c71998b0e714f65d3b2d792", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VZ89.json", "taxon_id": "9606", "uniprot_accession": "Q5VZ89", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/virus-maturation-go0019075.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0019075", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/virus-maturation-go0019075.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mabp-domain-ipr023341.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023341", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mabp-domain-ipr023341.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/uma-domain-ipr023340.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023340", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/uma-domain-ipr023340.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mabp-pf10240.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10240", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mabp-pf10240.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/mabp.yaml", "qualification_status": "NOT_ASSESSED", "record_id": 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"qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51498", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/mabp.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/uma.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51497", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/uma.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-100-10-50-2-100-10-50.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.100.10.50", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-100-10-50-2-100-10-50.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9H7P6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10240" ], "protein_name": "Multivesicular body subunit 12B", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ba57814dc4202c009567e133e9b3a1a9ebdb188c90a99ab07bb2c487cd4ec14a", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRNRAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIKDTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIGELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPRHISLTLPATFRGRNSTRTDYEYQHSNLYAISAMDGVPFMISEKFSCVPESMQPFDLLGITIKSLAEIEKEYEYSFRTEQSAAARLPPSPTRCQQIPQS", "sequence_length": 319, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ba57814dc4202c009567e133e9b3a1a9ebdb188c90a99ab07bb2c487cd4ec14a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H7P6.json", "taxon_id": "9606", "uniprot_accession": "Q9H7P6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mabp-pf10240.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10240", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mabp-pf10240.yaml" } ], "pfam_ids": [ "PF02141", "PF03455", "PF03456", "PF10240" ], "protein_name": "DENN domain-containing protein Crag", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEKRIADYFVVAGMPENPQLLQENSFNDSGRLRAATTIEPITDIGVYFPLLGEEVPEGYEILSHTPTGLQANLNHGSVRTTDCYIYFRRGKDRPPLVDIGVLYDGHERIMSDAEIVAETPGGRVANVNNSSAKTFLTYRRARADMPCNELVVTELCVIVQSKGERAPHAFCLIYKTLNKGYVGSDVYLCYKKSMYRPKHISYKPEILLRYPTFDHTDFPLNLCPSVPLFCLPMGASLEAWPHVNGTEKRKPISPVFSTFVLTVSDGTYKVYGSALTFYEDYDESKLSAEQKELLGWDEEFGAQHSLHMIKAICLLSHHPFGDTFDKWLKYLHRMVLYDVNIPIPVERYITQLLDEVPFPAPSIHLQLSSESNDRILLTQPEDSPLPRSGAGFHILLQNLGTDNCLHVLLLALTEQKILIHSLRPATLTAVAEAIVSLLFPFKWQCPYIPLCPLGLAEVLHAPLPYLIGVDSRFFDLYEPPTDVTCIDLDTNNISLCESQRHLSPKLLPKRAARLLRQTLTELENAKPISYDSTNSLDRDIRKRKRELVLEQRIQEAFLLFMASILRGYRDFLVPISKAPSVGATDPSALFQLKAFLRSRDKSHQKFFELMMKTQMFIRFIEERSFVSDGDHGLSFFDECAEKVGNYDETPAQLHLVDWDTGQNSERTKYIFPPDSVTPAGSQPGGGGGGLAYNYENFTLQPELLQSTKKTALSKFLQLQLNASLSPGSPIARRTKHEIKLSQKMASRCQQHPEAWSKYLLATCYSLYFLILPSMVLDPRHAGKEPEILRAAYDVLVRASRLKITCDEFCYRIMMQLCGIHNLPVLAVRLHYLMKRSGVQANALTYGFYNRCVLESQWPQDSTTISQIRWNRIKNVVLGAAQFRKAGKQRAASKVNKSLSASQDQNLSTLETVDGQSRTSLASSSGDGGGHGLLDFAAFDRLRNKLGSIVRQTVTGGNNETMGDAVNNTGLLIPGELSAPNTPTYGGDTEILAKALQQQQPRKQIMSIGGGDDDDEDEDEDEYTAGSPSTPQKQLEAGADDLEYAGGGDYEADEEDEDEVDEHVAAQRARQRVQSPTKISPRTPVTQNDPLGALNEEESAASATPTQETQQEQQHSQSQIDSSIYSDKPILFRGQRSATFDESTQIGKSMHRSETMPVASSGVTNSLANIGSSLKFTFGRYSPARLSLKKDLKLPANIIENISSISPSLTGKKSNELIQGSLSSIKSAANSLTKKFDEIKGVISANSTPTKTNNGHHPHGLHHGHHHPHHHHHHHSQHGNAEQEEHDAAVHEEGKLRRVSSDLDPWGRLSESRKSSYNNLVPLGENSSTGALHMHAFPAVPDNLYSLTSENAADRDCDVLIQLTTCSQCHNCSVLVYDEEIMSGWTAEDSNLNTTCHACNKLTVPFLSVQIERQVEESEQSDPLQDGKEQIANGNSHKTSLTVPYLNPLVLRKELENILTQEGDIALIKPEFVDEHPIIYWNLLWLMERIESKTHLPELCLPVPSDKEHIDPLSKVKTVHIQCLWDNLSLHTEASGPPMYLLYRETQPTSPLIKALLTDQAQLNKNVIQQIISAIRCNDFATPLKRLANERHKLKSNGVERSHSFYRDILFLALTAIGRSNVDLATFHREYAAVFDKLTERECNMYYRNQDLPPSASTIFCRAYFRPLLLP", "sequence_length": 1671, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "edaa6d7e70f41bf373dac28c967fdf7f3f45ced2be84ca0efe2d4a37e62ccf44", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9W3D3.json", "taxon_id": "7227", "uniprot_accession": "Q9W3D3", "uniprot_release": "2026_03" } ], "pfam_id": "PF10240", "short_name": "MABP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/miga-pf10265.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10265", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/miga-pf10265.yaml" } ], "pfam_ids": [ "PF10265" ], "protein_name": "Mitoguardin 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDETVSRSQFSLKTYAVRVFALPVSWYYSLSQIKFSPVAKKLFMVTAVSAVSVIFLAHHFKRRRGKQKGKVLPWEPEHLLLEHTRRAASEKGSSCSSSRQNLTLSLSSTKEKGSQCCNYPNGGLLSRYSGSAQSLGSVQSVNSCHSCACGNSNSWDKADDDDIRLVNIPVTTPENLYLMGMELFEEALRRWEQALTFRSRQAEDEACSSVKLGAGDAIAEESVDDIISSEFIHKLEALLQRAYRLQEEFEATLGGSDPNSIANDTDKDTDMSLRETMDELGLPDAMNMDSADLFASATELAEQREAQQTFSLESFCPCPFYEEAMHLVEEGKIYSRVLRTEMLECLGDSDFLAKLHCIRQAFQLILAEADNRSFLAESGRKILSALIVKARKNPKKFQDVFDEMINFLEQTDHWDSTELELAARGVKNLNFYDVVLDFILMDSFEDLENPPTSIQSVVNNRWLNSSFKESAVASSCWSVLKQKRQQMKISDGFFAHFYAICEHVSPVLAWGFLGPRNSLYDLCCFFKNQVLFFLKDIFDFEKVRYSSIDTLAEDLTHLLIRRTELLVTCLGADALRHATTCTSGHSHAVPTALLEAKVQ", "sequence_length": 600, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cd881fd711ae38c2ce7886517bf0cb916212913fd5c0222d000f693900e9ce81", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4QQM5.json", "taxon_id": "10090", "uniprot_accession": "Q4QQM5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/miga-pf10265.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10265", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/miga-pf10265.yaml" } ], "pfam_ids": [ "PF10265" ], "protein_name": "Mitoguardin 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFRRAEGTSMIQALAMTVAEIPVFLYTTFGQSAFSQLRLTPGLRKVLFATALGTVALALAAHQLKRRRRRKKQVGPEMGGEQLGTVPLPILLARKVPSVKKGYSSRRVQSPSSKSNDTLSGISSIEPSKHSGSSHSVASMMAVNSSSPTAACSGLWDARGMEESLTTSDGNAESLYMQGMELFEEALQKWEQALSVGQRGDSGSTPMPRDGLRNPETASEPLSEPESQRKEFAEKLESLLHRAYHLQEEFGSTFPADSMLLDLERTLMLPLTEGSLRLRADDEDSLTSEDSFFSATELFESLQTGDYPIPLSRPAAAYEEALQLVKEGRVPCRTLRTELLGCYSDQDFLAKLHCVRQAFEGLLEDKSNQLFFGKVGRQMVTGLMTKAEKSPKGFLESYEEMLSYALRPETWATTRLELEGRGVVCMSFFDIVLDFILMDAFEDLENPPASVLAVLRNRWLSDSFKETALATACWSVLKAKRRLLMVPDGFISHFYSVSEHVSPVLAFGFLGPKPQLAEVCAFFKHQIVQYLRDMFDLDNVRYTSLPALADDILQLSRRRSEILLGYLGVPAASSAGVNGALPRENGPLGELQ", "sequence_length": 593, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "17d3a66bbaaed8c33727395580503750da96b3a5859b9937a4233b7be7f018aa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7L4E1.json", "taxon_id": "9606", "uniprot_accession": "Q7L4E1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/miga-pf10265.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10265", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/miga-pf10265.yaml" } ], "pfam_ids": [ "PF10265" ], "protein_name": "Mitoguardin 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFRRTEGMSMIQALAMTVAEIPVFLYTTFGQSAFSQLRLTPGLRKVLFATALGTVALALAAHQLKRRRRKKKQVGPEMGGEQLGTVPMPILMARKVPSVKKGCSSRRVQSPSSKSNDTLSGISSIEPSKHSGSSHSLASMVVVNSSSPTAACSGSWEARGMEESVPTTDGSAESLYVQGMELFEEALQKWEQALSVGQRGDGGSTPTPGDSLQNPDTASEALSEPESQRREFAEKLESLLHRAYHLQEEFGSTFPSDSMLLDLERTLMLPLTEGSLRLRADDEDSLTSEDSFFSATEIFESLQIGEYPLPLSRPAAAYEEALQLVKEGRVPCRTLRTELLGCYSDQDFLAKLHCVRQAFEGLLEERSNQIFFGEVGRQMVTGLMTKAEKSPKGFLESYEEMLSYALRPETWATTRLELEGRGVACMSFFDIVLDFILMDAFEDLENPPSSVLAVLRNRWLSDSFKETALATACWSVLKAKRRLLMVPDGFISHFYSVSEHVSPVLAFGFLGPKPQLSEVCAFFKHQIVQYLRDMFDLDNVRYTSVPALAEDILQLSRRRSEILLGYLGAPVASSIGLNGPLPRENGPLEELQ", "sequence_length": 593, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "62419be59ab0738f4087464bb3fb4e3db68b50596a8293454c5d4d8d684a8008", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BK03.json", "taxon_id": "10090", "uniprot_accession": "Q8BK03", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/miga-pf10265.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10265", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/miga-pf10265.yaml" } ], "pfam_ids": [ "PF10265" ], "protein_name": "Mitoguardin 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDCCSAPGISWEAGVGRPAVPGLELQIRRGAMSEETVSESQFSLKTAALRVFDLPLTWYYSLSQIKFSPVAKKLFVVTAVSAISVIFLAHHFKRKRGKKKGKILPWEPEHLILEYTKRAASDKGSSCSSSRQNLTLSLSSTKDKGSQVCNYANGGLFSKYSGSAQSLASVQSVNSCHSCACGNSNSWDKADEDDIKLVNIPVTTPENLYLMGMELFEEALRRWEQALTFRNRQAEDEACGSIKLGAGDAIAEENVDDIISTEFIHKLEALLQRAYRLQEEFEATLGASDPNSLADDIDKDTDITMKGNVEDFGLRDTLSIASTDSFASAAELAEHREVRHTYSLESLCHCPFYEEAMHLVEEGKIYSRVLRTEMLECLGDSDFLAKLHCIRQAFQVILSESANRIFLAESGRKILSALIVKARKNPKKFEDVFDEMIYFLEQTDHWGSTEMELAARGVKNLNFYDVVLDFILMDSFEDLENPPTSIQNVVNNRWLNSSFKETAVASSCWSVLKQKRQQMKIPDGFFAHFYAICEHISPVLAWGFLGPRNSLYDLCCFFKNQVLLFLKDIFDFEKVRYSSTETLAEDLMQLLIRRTELLMAYLEADALRHTSSCLSSHGHVMSTGLLEAKVQ", "sequence_length": 632, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "acd5e22d2c72d13f80870cdfe2eed6a3a6f876b0aeb534d1b4655c05a408a1c6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NAN2.json", "taxon_id": "9606", "uniprot_accession": "Q8NAN2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/miga-pf10265.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10265", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/miga-pf10265.yaml" } ], "pfam_ids": [ "PF10265" ], "protein_name": "Mitoguardin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQRVMPASWSSGGSLLPFRVSTTTKVVLFSLTAGVALMSVLSRFLRRRKPPRPPRRARKYTGRRNRNSMRSPNDLISIAGSKASARSGSPVGSTLAYSDRLSMASGSIGVGVLGVQNAGPGSSVVTQLTAQQLGMMGMEALDTVINFWEDALAAHYSPGGLPALLTTAEDSEFCREIQNLLEMAYTLQEQSELLFLDQRSVLFREEHSIDEAEEEAGEADDDRRSRKSGSVLSRAGSDPNFDSAESFASALDQVADLREFDGFIETSYEEYPLFQSALKHHDEYTVPCRTIRAELMHCSTDTEYLAKLHCVRLAFQFLFKDPAVGQWICDAGRQILTDLLCLGDKDTKEFLVGYEDMVNYLHDSNNWPCIQMELEQRNVKAMTFYDICLDFIILDSFKDLDAPPASVTAVVQNRWLSNGFKETALTTAVWSVLKAKKRMLKFPNGFMSHFYVISEQISPLMAWGFFGPNENLRDICHYFREELLAFLGDIFSFQKSRFTTIEEFSQDVLQHMQTRVNNIGVKFSQ", "sequence_length": 525, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "98512ea272dd68170a6313fc51156a54185370a5ab672bbece1bcf34145b34b3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9W3F7.json", "taxon_id": "7227", "uniprot_accession": "Q9W3F7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10265", "short_name": "Miga", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, 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"FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/lactonase-pf10282.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10282", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/lactonase-pf10282.yaml" } ], "pfam_ids": [ "PF10282" ], "protein_name": "Carboxy-cis,cis-muconate cyclase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"data/traits/function/molecular_function/go/6-phosphogluconolactonase-activity-go0017057.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0017057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/6-phosphogluconolactonase-activity-go0017057.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/6-phosphogluconolactonase-nf008258.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/6-phosphogluconolactonase-nf008258.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/nitrous-oxide-reductase-n-terminal-ipr011045.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011045", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/nitrous-oxide-reductase-n-terminal-ipr011045.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/lactonase-pf10282.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10282", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/lactonase-pf10282.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P52697", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10282" ], "protein_name": "6-phosphogluconolactonase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a7bc7809b47bba280d4c576c193ef981fe6e8a0f7351a74564d1a872ee36e301", 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"data/traits/sequence/domain/pfam/yjl171c-tos1-n-pf10290.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10290", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/yjl171c-tos1-n-pf10290.yaml" } ], "pfam_ids": [ "PF10287", "PF10290" ], "protein_name": "Probable circularly permuted 1,3-beta-glucanase YJL171C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQSIVLSVCMFMLHTVAASGPQSYQKLDFTNVGFTGSYVDVNKFKDITNNESCTCEVGDRVWFSGKNAPLADYLSVHFRGPLKLKQFAFYTSPGFTVNNSRSSSDWNRLAYYESSSKTADNVTFLNHGGEASPCLGNALSYASSNGTGSASEATVLADGTLISSDQEYIIYSNVSCPKSGYDKGCGVYRSGIPAYYGYGGTTKMFLFEFEMPTETEKNSSSIGYYDLPAIWLLNDHIARTSQYPTNANCSCWASGCGEYDIFEAMNGTEKNHLYSTFHTFQGIEDLGTGIQSYGYITRNTTGTMKGGVVFDSSGNVVSFISDATPFNGTVSADTVNDLLAAIPENETYSSQLMSISATAPSTTSKSNGVALTKMQNGVWYYILAIFTAFTQVVLI", "sequence_length": 396, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "71890910f33030b82edd569d3bdfce40048f1e90c38a0a371346de02914d890b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P46992.json", "taxon_id": "559292", "uniprot_accession": "P46992", "uniprot_release": "2026_03" } ], "pfam_id": "PF10287", "short_name": "YJL171C_Tos1_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-urmylation-go0032447.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032447", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-urmylation-go0032447.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/trna-thio-modification-go0034227.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034227", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/trna-thio-modification-go0034227.yaml" } ], "pfam_ids": [ "PF10288" ], "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MACNSSGCESGCYDREKDNGSKIVDDAVSGGGNHESVCVKCKCNAPMTFGDGGFDDGRFCADCFRNNVFGKFRLAVTSHAMITPSDNVLVAFSGGSSSRVSLQFVHELQIKALKNYEASRDRSLPVFGVGVAFVDETAAFPALSTEMIDAIEWVRYTVSCLSPPAKDLHVVPVESIFGSDSLDARDRLLKLLDSVPDDTGKEDLLLHLKMLSLQKVAAENGYNRLVLGSCTSRIASHVLTATVKGRGYSLSADIQHVDARWKVPIVLPLRDCVRLEITRLCLLDGLKTVELACRSQCGINDLVSSFVALLQEENPSRECTIVRTAAKLTPFYFNKIPETDDSNVPMATQRRLKRFNLKYDGSMTTEAFCPICNGPLNRSDSSELDTFEEGQESDVLYAACCSSCRFQILPQDGSSLEQFSSFLPDHMISQVKHQKVDSQAYLREKIKDCLLLDDEEVV", "sequence_length": 458, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d2f3b6472dc038e0a92bad14de9cc9403c6be037658f62df0293147514493d8c", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O65628.json", "taxon_id": "3702", "uniprot_accession": "O65628", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-urmylation-go0032447.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032447", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-urmylation-go0032447.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/trna-thio-modification-go0034227.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034227", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/trna-thio-modification-go0034227.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/trna-wobble-position-uridine-thiolation-go0002143.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0002143", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/trna-wobble-position-uridine-thiolation-go0002143.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ctu2-pf10288.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10288", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ctu2-pf10288.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P53923", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10288" ], "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6e6dec85b97e08bb7e3ed94e53f237eb95085271214edb62c4f83e3bdccb29be", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MECQRCPASARNPATVESRKEKFCDECFIKFVSTKQRKQMMKDEYFRNLFKVIYPFEKEGSVSKILLPLSHSDSGSLVMLDIVHDLLLEQTKQHNNRTGFTVDVLTVFTEENVSVIKERMESLINEKMSQLNKISNIFNVHFIDVNEFFNNASEVSTFIIDNENFEIFSKSKSVDDSNILTLKEILGKYCLNNSSRSDLISIIKTQLIKHFAYENGYNAIMWGHSMTKLSEVIISLVVKGKGSQIATFLDSESFDTLNNKPCKYKNLYPMKDLLSVEIESFLQIRNLAQFLINVEETNVKPNCLIARKSLPSLGQQKLVKNMTINEITNKYFQDIQNDYSNIISTVLRTADKLTQPKSSMAKPSQCQICQSKIYTNPSNWLNRITVTSPYPVETTEEKYLFKQWQDSKLGQSHTHYVELLNEIKQGASNSLDVEDGDVKLCYGCLILLNTSIKDKNLVWPKVDTMDITANATNKNKELSQILDQFEINSDGEE", "sequence_length": 493, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6e6dec85b97e08bb7e3ed94e53f237eb95085271214edb62c4f83e3bdccb29be", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53923.json", "taxon_id": "559292", "uniprot_accession": "P53923", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-urmylation-go0032447.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032447", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-urmylation-go0032447.yaml" } ], "pfam_ids": [ "PF10288" ], "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELGNFVTDLNGKKCVKCDKDAKFTGVDPKKAWYCQECFVQMVRNKFRSSLSKKKIYKDADARDTLIVFDGTLSGTFLLHQINDALKQITYKRLMVKPTVLVLVSLTEDTEIQMVIKRIQEIKKSVLENVRWVVAHLACSMYDEDFKLKENECNGVEKISDYNQLIASCSVPTYRKELERVLKEKCLQKIACSMGILKCMVPDHADDLGRLAIDQLCLGRGGSISTLVTVTDKRPDFMLIRPLCDISKKELAVYNYLCDIDKHCIHIAQQNNQQKSVQTLTDAFICTLENEKFYSTINTVLSTAAKIHNTSIGKDDSKCSFCNVEVADSVCSTCSAIRECTGDLLTLLF", "sequence_length": 349, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5934234de355172ab3af2635a480e6c26e2ea99aadd83fef97b224c3c2b3697f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q19906.json", "taxon_id": "6239", "uniprot_accession": "Q19906", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ctu2-pf10288.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10288", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ctu2-pf10288.yaml" } ], "pfam_ids": [ "PF10288" ], "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCQVGEDYGEPAPEEPPPAPRPSREQKCVKCKEAQPVVVIRAGDAFCRDCFKAFYVHKFRAMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACGQSLEERSKTLAEVKPILQATGFPWHVVALEEVFSLPPSVLWCSAQELVGSEGAYKAAVDSFLQQQHVLGAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQLFCSVRTLTAKEELLQTLRTHLILHMARAHGYSKVMTGDSCTRLAIKLMTNLALGRGAFLAWDTGFSDERHGDVVVVRPMRDHTLKEVAFYNRLFSVPSVFTPAVDTKAPEKASIHRLMEAFILRLQTQFPSTVSTVYRTSEKLVKGPRDGPAAGDSGPRCLLCMCALDVDAADSATAFGAQTSSRLSQMQSPIPLTETRTPPGPCCSPGVGWAQRCGQGACRREDPQACIEEQLCYSCRVNMKDLPSLDPLPPYILAEAQLRTQRAWGLQEIRDCLIEDSDDEAGQS", "sequence_length": 515, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "993d4485a268bcbbecf402d8beb2e0c93e4834d1481113cc4d65947bc2eb683c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2VPK5.json", "taxon_id": "9606", "uniprot_accession": "Q2VPK5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ctu2-pf10288.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10288", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ctu2-pf10288.yaml" } ], "pfam_ids": [ "PF10288" ], "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQNTALDNSADSKCSKCDNKATVLTKSDAVCDSCFVRRIENKIRRQFELVRPNLQGRKSKRAMLAISGGISSMAMLETANYLSKYRDDNYRPMFDELLAVHFQWGTDSAVAKTIEESISKNYPKCPFKVIGEAELLNRTIATDSRGNIEINADNEKFNPEVISSLASRQDLLYRIRDKLLVSYARKANCDTIVFGDSGTTIAARVLELVAEGRGFAIPWYTSVCSKLPNCDTFLLRPLREVLSSDLKSYMNIKGLAFCDSLIEARPNTIHGVTESYFSSLNDTFPSLVSTVVKMSSKLHVPSTEAICTICNLPMQEDAETWLQKTTVEHPDSVEGIKNQNVCYGCSVSLKSLKGTLHIPDIEKEGI", "sequence_length": 366, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c2bbcb2752365f95d39ac31aca913541c192a9442f0f580d970bdf4dbfbd58fb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UUC7.json", "taxon_id": "284812", "uniprot_accession": "Q9UUC7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/cytosolic-trna-wobble-base-thiouridylase-complex-go0002144.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0002144", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/cytosolic-trna-wobble-base-thiouridylase-complex-go0002144.yaml" } ], "pfam_ids": [ "PF10288" ], "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCSIGEDDFGDEGAAHAMVVESLPLGIVLSPGNCSKCDVNSGELYKLNFRTAECRECFLAYARHKFRAALGAAKILPRNAEVLLVLDGSAESLVLLDMLHFAQTQNTFKRLHCNARVVYVEEQQVQGRDPVDLEALQRLSTQYAPFDFYVIELGALPSSLQRIKDYSPFLNANNELIHKLQKLRSLTARQDYLQQQRKNLICSVAQCLQCTHVFESNISVDLATQLLTAIALGRGGSAALDVALLDDRLSGDVKLLRPLKDLTEQEIQFYIHAQRLKPHFQKGSRYGMEHGETASLQNLTSAFVANLQQNFASTVSTVFRTGDKIAVNSNPEQSSCVHCRSTLDSELSDTLLAIEYSRSVSEAGVSLYKSGQDLEGLAKKRLENKDGLCHACRAIQTELDSGNLL", "sequence_length": 405, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dd95f3b91844d8903a6d38b81b237b797daae20df86d3335b12fb9c4edec9d19", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VIV3.json", "taxon_id": "7227", "uniprot_accession": "Q9VIV3", "uniprot_release": "2026_03" } ], "pfam_id": "PF10288", "short_name": "CTU2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cell-wall-protein-yjl171c-tos1-c-terminal-ipr018805.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018805", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cell-wall-protein-yjl171c-tos1-c-terminal-ipr018805.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cell-wall-protein-yjl171c-tos1-n-terminal-ipr018807.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018807", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cell-wall-protein-yjl171c-tos1-n-terminal-ipr018807.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/yjl171c-tos1-c-pf10287.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10287", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/yjl171c-tos1-c-pf10287.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/yjl171c-tos1-n-pf10290.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10290", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/yjl171c-tos1-n-pf10290.yaml" } ], "pfam_ids": [ "PF10287", "PF10290" ], "protein_name": "Probable circularly permuted 1,3-beta-glucanase 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"MTDSENESTETDSLMTFDDYISKELPEHLQRLIMENLKGSTTNDLKQTSNNSEFNVSKNGSFKGLDDAIQALQMQSVLHPSSLGSLATSSKFSGWSFAQGFFVGQLSIVLLFIFFLKFFIFSDEPSKSKNPKPAASRHRSKFKEYPFISREFLTSLVRKGAKQHYELNEEAENEHLQELALILEKTYYNVDVHPAESLDWFNVLVAQIIQQFRSEAWHRDNILHSLNDFIGRKSPDLPEYLDTIKITELDTGDDFPIFSNCRIQYSPNSGNKKLEAKIDIDLNDHLTLGVETKLLLNYPKPGIAALPINLVVSIVRFQACLTVSLTNAEEFASTSNGSSSENGMEGNSGYFLMFSFSPEYRMEFEIKSLIGSRSKLENIPKIGSVIEYQIKKWFVERCVEPRFQFVRLPSMWPRSKNTREEKPTEL", "sequence_length": 426, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "983265f9c58e7f5b4c0890bb070ead96acb2801a71ba20f95f38d3d6d9469a5e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P41800.json", "taxon_id": "559292", "uniprot_accession": "P41800", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/synaptotagmin-like-mitochondrial-lipid-binding-protein-smp-domain-foun-cd21675.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd21675", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/synaptotagmin-like-mitochondrial-lipid-binding-protein-smp-domain-foun-cd21675.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mmm1-domain-ipr019411.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019411", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mmm1-domain-ipr019411.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/synaptotagmin-like-mitochondrial-lipid-binding-domain-ipr031468.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031468", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/synaptotagmin-like-mitochondrial-lipid-binding-domain-ipr031468.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mmm1-pf10296.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10296", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mmm1-pf10296.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/smp.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51847", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/smp.yaml" } ], "pfam_ids": [ "PF10296" ], "protein_name": "Nucleus-vacuole junction protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLKVFLAVYLLGGITFLPLVLFTLYKIHLLYSNLKSASKKELDHDTADEIDEKTRLLARDIDPEFKARKLEEQLGVKVFNKGWITVTKQYYYHSSEVAVILKNSNNNKDSDTALQEQILQRTDLKKKQRFFAVLRHGNLFLYKDDSQNANLVHAISLQNRFITIWPRFDELGKEELPDASLFTKRTCIAIFKNDLVSIDSKNHNVILPHFDPLTSAESNNGDISTNDTTHEYQSQFHSSNQFFLYFDNNMDKEDWYYQLINASKNSNSLSTGLLDPNVSANAAHLKTKDMLQLIQDINSTENQLTTKWLNALLGRLFLSLQQTDTLNKFIHEKICKKLNKIKTPGFLDDLVVEKVDVGDSAPLFTSPELLELSPEGSTKIAIDVQYRGNLTIIIATKASINLGSRFKQREVSLQLSIKIKEFSGPLLFLIKPPPSNRIWYAFRTEPIMDFEIEPIVSSSKLSYNVVTNAIKSKFAEAVKESLVVPFMDDIVFYPTPNEVYRGGIWEEQDPEAAARARTAAAASDMNNTSAKEHLEALQEGGMKTQSRIKKALRPERKKENLKDLVDASGVATKTTTQTTVTTATNDDVSSSENSTKSRKYFKNSIKKIGRWYKDNVGNSSDTEDMDEIDVQDKKNDDSADERESDNPILTSNPKMISNRRPVPRRPSQPLNTLSPKLEGRKEKDTENFPVPPSASNMNASKMFANKENRKFSVSSNDSQNSLKNGDPHVKASKLESSQAFVKKTSQNRFNDGFFKQDLEFEEQREPKL", "sequence_length": 770, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "38bb8dd2af9f556072615e030e8c656386b5194fc845718663bd0bb25a410afc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06833.json", "taxon_id": "559292", "uniprot_accession": "Q06833", "uniprot_release": "2026_03" } ], "pfam_id": "PF10296", "short_name": "MMM1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/iml2-tpr-39-pf10300.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/iml2-tpr-39-pf10300.yaml" } ], "pfam_ids": [ "PF10300" ], "protein_name": "Inclusion body clearance protein IML2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFRVFGSFGSKGNQSSGEEQSTKTKQVLKQANDFEIALKAMDFVLDDRTDEGLNLLKKAEMETGSDQTILTLARGVIEFLQATLSFETEEMKRAAITLGKAEQMSWKSKQNAEKTNFRSSSIYPPGTVYAVTYTESCLLHALLMLFSESMMEAAKALLKLRRAYTMLQDIMVTVKKAERSKNSSSPSPSEKSQESCGSFVSAETTFISVDIPYKLSSEDKSNPLLLEFAEKIYTMRMGRLSGAHIGNTPSFHRLRDDLGLQTTPSQASDRHSVSDDFDLEQATIDEFIHSGANLCYGILQVVLSLLPPAIGAVLSIVGFKGSREEGLRLVWKATKERNVHGCIGLLGLMFYYDGPFQFTDADFDIPPNDNGSRALNKSRTNDSSLLPGYMDSATLLHPGKILEDALLKARALFPNSALWLLNEAKMLAGKGRLRDSLALMDSIDVNSIRMRQVKSLMVFERAILLVNLHEYNRAADDLISLLDISDWSHALYTYFAGCCYLENWRMTQLGLLNDGKEQFYKERARELIFDAPSLLGKKTFKSKNLPLDRFMLRKVQQFNNMQKKLNLQEPLDSIATSPVHELAYFYNGYNRMTENDLILTKKMLTEYHNPAIDSEDPDQELIRNLLLSLTLRRLGDAERGLALLDDIVLPKIFYIQNGKVKYFKKTEDPWAYPAALYERALFCWKLGGMESLNECREWLLRAQNYAADYELSTRIGMKIKAALDRVENALA", "sequence_length": 731, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "790a9db59b47fb2e85a132aa6fb3fca6b7fcdeeef063bebd56f76ed282cca334", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47031.json", "taxon_id": "559292", "uniprot_accession": "P47031", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/iml2-tpr-39-pf10300.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/iml2-tpr-39-pf10300.yaml" } ], "pfam_ids": [ "PF10300", "PF13181" ], "protein_name": "Tetratricopeptide repeat protein 39B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDAVLACRLRGRGNRVAALRPRPRPGGSAGPSPFALLCAGLSPEPRAGVGSEFPAWFLGGSSQRRNMALLGSRAELEADEDVFEDALETISISSHSDMATSSLHFASCDTQQAPRQRGASTVSSSSSTKVDLKSGLEECAVALNLFLSNKFTDALELLRPWAKESMYHALGYSTIVVLQAVLTFEQQDIQNGISAMKDALQTCQKYRKKYTVVESFSSLLSRGSLEQLSEEEMHAEICYAECLLQKAALTFVQDENMINFIKGGLKIRTSYQIYKECLSILHEIQKNKLQQEFFYEFEGGVKLGSGAFNLMLSLLPARIIRLLEFIGFSGNRELGLLQLREGASGRSMRSALCCLTILAFHTYISLILGTGEVNVAEAERLLAPFLQQFPNGSLVLFYHARIELLKGNLEEAQEVFQKCISVQEEWKQFHHLCYWELMWINVFQQNWMQAYYYSDLLCKESKWSKATYVFLKAAILSMLPEEDVVATNENVVTLFRQVDSLKQRIAGKSIPTEKFAVRKARRYSASLPAPVKLILPALEMMYVWNGFSIVSKRKDLSENLLVTVEKAEAALQSQNFNSFSVDDECLVKLLKGCCLKNLQRPLQAELCYNHVVESEKLLKYDHYLVPFTLFELASLYKSQGEIDKAIKFLETARNNYKDYSLESRLHFRIQAALHLWRKPSSD", "sequence_length": 682, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1b4f6f4d7dd0c024b96c1a6a3bb79d22359cea87ad0659df89d7308af5b561ba", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VTQ0.json", "taxon_id": "9606", "uniprot_accession": "Q5VTQ0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/iml2-tpr-39-pf10300.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/iml2-tpr-39-pf10300.yaml" } ], "pfam_ids": [ "PF10300", "PF13174" ], "protein_name": "Tetratricopeptide repeat protein 39B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALVGSRVELDADEDIFEDALETISRSPSDMATSGFHFVPCETKRTSRQLGASAMGRPEGSSAKVDLKSGLEECAEALNLFLSNKFKDALELLRPWAKESMYHALGYSTIVVLQAVMTFEQQDIQNGISAMKDALQTCQKYRKKCTVVESFSSLLSRGSLEQLSEEEMHAEICYAECLLQKAALTFVQDENMINFIKGGLKIRTSYQIYKECLSILHVIQKNKQEQHFFYEFEGGVKLGTGAFNLMLSLLPARIIRLLEFIGFSGNRDLGLLQLREGASGSSMRSPLCCLTILAFHTYISLILGTGEVNVVEAESLLAPFLQQFPNGSLILFYHARIELLKGNTEKAQETFRKCISVQEEWKQFHHLCYWELMWIHIYQQNWMQAYYYSDLLCKESKWSKATYVFLKAAILSMLPEEEVAATKENVVSLFRQVDGLKQRIAGKSLPTEKFAVRKARRYSPPSGVPGKLVMPALEMMYVWNGFSIVGKRKDLSENLLVTVEKAEEALQNQDFTDYSVDDECLVKLLKGCCLKNLERPLQAELCFNHVVESEKLLKYDHYLVPFTLFELAFLYKSQGEIDKAIKVLETARNNYKDYSLESRLHFRIQAALHLWKKPSTD", "sequence_length": 617, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "03e00c7252f570adb4981f11dd93f774874ca52187f1f86b853e82979cce8a71", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BYY4.json", "taxon_id": "10090", "uniprot_accession": "Q8BYY4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/otolith-morphogenesis-go0032474.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032474", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/otolith-morphogenesis-go0032474.yaml" } ], "pfam_ids": [ "PF10300" ], "protein_name": "Tetratricopeptide repeat protein 39C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGSEQQRPRRRDDGDSDAAAAAAAPLQDAELALAGINMLLNNGFRESDQLFKQYRNHSPLMSFGASFVSFLNAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDVRKSAPSMVDRLQRQIIIADCQVYLAVLSFVKQELSAYIKGGWILRKAWKIYNKCYLDINALQELYQKKLTEESLTSDAANDNHIVAEGVSEESLNRLKGAVSFGYGLFHLCISMVPPNLLKIINLLGFPGDRLQGLSSLMYASESKDMKAPLATLALLWYHTVVRPFFALDGSDNKAGLDEAKEILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAVDQREIQHVCLYEIGWCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDVDGAQIVFKEVQKLFKRKNNQIEQFSVKKAERFRKQTPTKALCVLASIEVLYLWKALPNCSFPNLQRMSQACHEVDDSSVVGLKYLLLGAIHKCLGNSEDAVQYFQRAVKDELCRQNNLYVQPYACYELGCLLLDKPETVGRGRALLLQAKEDFSGYDFENRLHVRIHAALASLRELVPQ", "sequence_length": 583, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7e1b63fbc308931640b5574fc20c705f2178d417899c5b06d22449a9498a7bf7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N584.json", "taxon_id": "9606", "uniprot_accession": "Q8N584", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/otolith-morphogenesis-go0032474.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032474", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/otolith-morphogenesis-go0032474.yaml" } ], "pfam_ids": [ "PF10300" ], "protein_name": "Tetratricopeptide repeat protein 39C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGSEEQWPRRREDGDPDAAAAPLQDAELALAGINMLLNNGFRESDQLFKQYRNHSPLMSFGASFVSFLNAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDARKSTPSMVDRLQRQIIIADCQVYLAVLSFVKQELSAYIKGGWILRKAWKIYSKCYVDINALQELYQKKLTEEPLASDAANDNHVVAEGVTEESLSRLKGAVSFGYGLFHLCISMVPPNLLKIINLLGFPGDRLQGLSSLTYASESKDMKAPLATLALLWYHTVVRPFFALDGSDNKGGLDEAKAILLRKESAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAVDQREIQHVCLYEIGWCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDVDGAQLVFKEVQKLFKRKNNQIEQFSVKKAERFRKQTPTRALCVLASIEVLYLWKALPNCSFPNLQRMSQACHEVDDSSVVGLKHLLLGAIHKCLGNSQDALQFFQRAARDELCRQSNSYVPPYACYELGCLLLDSAETVGRGRTLLLQAKEDFSGYDFENRLHVRIHAALASLRELVPQ", "sequence_length": 580, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e68d139c4ca04d9baa429becd4e875ef47493df7c076055c95d38f797b17a617", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VE09.json", "taxon_id": "10090", "uniprot_accession": "Q8VE09", "uniprot_release": "2026_03" } ], "pfam_id": "PF10300", "short_name": "Iml2-TPR_39", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsc3-c-pf13373.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13373", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsc3-c-pf13373.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsc3-n-pf10302.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsc3-n-pf10302.yaml" } ], "pfam_ids": [ "PF10302", "PF13373" ], "protein_name": "DSC E3 ubiquitin ligase complex subunit C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTFPAFLSPDPTWDGDSTGGPLLLTVRFSASIPDFPLDIENPDITTAAGLKQLIRTHLPPNLSSHRLRLIYAGRGLEDATPLSVSLKLPPSPSRTPVVQEDATTVKGKGKAPIREQPRLYIHCSIGDIVLSDADLAAEAAIATTLQQEQADEGYTGRKKQQQPPPSTTSAPRGFDRLLSAGFTPSEVSALRSQFMAIQSVSRTPDTMPTGAELRELEDRWMDEGSSAMAAGVPGGGEGISFADDDGGFGAGSRGAMDDMLWGAVMGFFWPVGCAMWLRREEGVWSWRKGLAVFVGVVINVAFGAMRIMN", "sequence_length": 309, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0956503be51766bd7b3f14d5fb9f57e8e4f7fe479abe6f63b01f02a136537d40", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B0Y6Q5.json", "taxon_id": "451804", "uniprot_accession": "B0Y6Q5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/dsc-e3-ubiquitin-ligase-complex-go0044695.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044695", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/dsc-e3-ubiquitin-ligase-complex-go0044695.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dsc-e3-ubiquitin-ligase-complex-subunit-3-ubiquitin-like-domain-ipr019413.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsc3-c-pf13373.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13373", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsc3-c-pf13373.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsc3-n-pf10302.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsc3-n-pf10302.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q12015", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10302", "PF13373" ], "protein_name": "DSC E3 ubiquitin ligase complex subunit 3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "babea4a60d6e244e63c729568c9dfe37614f13c2c2134290446d091f6818f0b5", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSAEPLLPTHNGSQGGEVRSPDQKFIVIRFSDVSVRDLQLNISNVPFSNINTHWLRRMCRELRPQQTQKRRLKFIRNGSILNTHSKIAEELTHYFDTANNSNVATGTSVAPEQNNYYIHCIIGTEELTQAELANEDLKDDATPSNDSMTTQAIGFDRLRSVGFTEQEIELLRQQFRATYGDLEEEEERLAQNGNRDDEGHDIRQLEEQWMESGSGTAQGNGAGGGNEDRFNSVPIANIKHNKDLLLGICVGFFFGVFGILLMKFDGLFNRRQKMAIFAGVIVNVMFCLVRGF", "sequence_length": 292, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "babea4a60d6e244e63c729568c9dfe37614f13c2c2134290446d091f6818f0b5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12015.json", "taxon_id": "559292", "uniprot_accession": "Q12015", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsc3-c-pf13373.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13373", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsc3-c-pf13373.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsc3-n-pf10302.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsc3-n-pf10302.yaml" } ], "pfam_ids": [ "PF10302", "PF13373" ], "protein_name": "DSC E3 ubiquitin ligase complex subunit 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSSALKKWEIVIRFASSIPDLSLEISDAQTTTIHSLFKIVRNRIPECRDKQLKMVFQGRLLSPGFTVERAVRGNWQRDENDDPNIVQKAFIHCIVGPTLTEEELASQDQAQSGLNSNSESPDDLQNAQTGETLRGFDRLREAGFTETEVNNLRSQFHRLRGTNLDSLTEDAIREAEDDWIDNGGQNSSADELDMSYETLLAGVLIGFFGGAIACYFLWERTMFSLRMQLSILVGIICNFAYGLLHSYRW", "sequence_length": 250, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7bdcd9f4b1c0754773fa56174e2c1a1cad87a98be6b7c4b251712e956bfaa314", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HE10.json", "taxon_id": "284812", "uniprot_accession": "Q9HE10", "uniprot_release": "2026_03" } ], "pfam_id": "PF10302", "short_name": "Dsc3_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2408-pf10303.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10303", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2408-pf10303.yaml" } ], "pfam_ids": [ "PF10303" ], "protein_name": "Cu(2+) suppressing and bleomycin sensitive protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFASAGQQHPQIVPKEEESILNYLLEVRSSLAKLKQNRTQYLNSKDVQTTYQHVLTKVRELDDIRKNSHETPAKSAATLIHSTELHNRVDSVLDDVFQLLSLCFLTVGLKNSAPATYASLSTVESLLEHLNESNVFTHHDLSPIKERLEEISKIVEQKNSSPAYDEDGNDDRLREIDNERKKNKIEEDLLLRAKLKHCKDEYDILEGKLEEIDPSLSTVMEKLFRIRRGLLSLVASAKKTMSKSDINTNSLLQEQNDLQTNNESLTDDKHLVSQEYVHEKLSVLKNELSELESNRDDSGKFKSLESHQVAEKGQSVLNGLLDDCHDLVNDLSHQKNGGLTLDPYLQPIYEQLIDIKTTLENLMITRRWTLRETDLFSYQKKLNEIDNKRINGKFPTKSQDSKGQSILLYLLRRCYAIIYKLLESSEPVSEALQPIHNQLSTVRRCLLELKRMGGVNNERELYPYQMKLASLDNLRTEGIFYDSDGNIPEGQGILNALLAECFDILHELKVEAEEKAQNSTSSDGSDDDDNGESGIDSNSNDSEPESEYQQE", "sequence_length": 551, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "892fe4b7f7205f71bfd73b2242857f882a72ceb441c267af9eafa0e287374b80", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q08977.json", "taxon_id": "559292", "uniprot_accession": "Q08977", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2408-pf10303.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10303", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2408-pf10303.yaml" } ], "pfam_ids": [ "PF10303" ], "protein_name": "CUB1 family protein C30C2.08", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rna-polymerase-ii-assembly-factor-rtp1-c-terminal-domain-2-ipr019414.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019414", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rna-polymerase-ii-assembly-factor-rtp1-c-terminal-domain-2-ipr019414.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rna-polymerase-ii-assembly-factor-rtp1-c-terminal-ipr019451.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019451", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rna-polymerase-ii-assembly-factor-rtp1-c-terminal-ipr019451.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/rtp1-c1-pf10363.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10363", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rtp1-c1-pf10363.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/rtp1-c2-pf10304.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10304", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rtp1-c2-pf10304.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q12751", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10304", "PF10363" ], "protein_name": "RNA polymerase II assembly factor RTP1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b2c21d5a53b6509d21159320696a7889ae0dfa966d71b49611df0746efb8df5f", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tango6-n-pf25267.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25267", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tango6-n-pf25267.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-tango6-pf23565.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23565", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-tango6-pf23565.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rtp1-c2-pf10304.yaml" } ], "pfam_ids": [ "PF10304", "PF10363", "PF23565", "PF25267" ], "protein_name": "Transport and Golgi organization protein 6 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/swiss-army-knife-rna-repair-protein-had-domain-ipr018812.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ymr265c-like-c-terminal-ipr056904.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ymr265c-like-c-terminal-ipr056904.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/had-sak-1-pf10307.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10307", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/had-sak-1-pf10307.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ymr265c-c-pf25108.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25108", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ymr265c-c-pf25108.yaml" } ], "pfam_ids": [ "PF10307", "PF25108" ], "protein_name": "Uncharacterized protein YMR265C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEFEEFRRKGEMSSRCGNHRVLRKWNSCACELAVPFEVPEHAITKLHIYDFDNTLFATPGPTEQLYTRELLNLLTSSTLPNGGWWNEPGFLQAAIEISKTKPRRYSWNADIVKLAEESYSAKDTISIVLTGREESKFHKLIEHALQTARSHWKCSENEFRFNAVCLKKRAISEYTSKYKKELMRDFLEYYPSLRELSIYDDRIHQIDAFKSFFHSLDLPRLKWSAIPVRPFTKSLPREQELEMVMDMVRKNNSQALSTSQKFDLRRTPRQIGYILCTASHRLLSIEVIKYLKRRKGRRTFRPKLYEHPLYIPCAEPGKDIPALEIAKVWSNNDTRTFDSEKKVQHISQIFYLEQPGKCIVHFQVTDLAVIASAHHNRRKPLEVYFKATPEPNRYTFTLFPEYIVTGHFYKRDRIEDLEVVTERLINCKEDIHWVPLDNTIPIKAFFGRFAKLAAIPCSNA", "sequence_length": 461, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "154d1461fe53526496dc265cc0145f38710472e9edc42244fd66a6a39b1d7079", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q03508.json", "taxon_id": "559292", "uniprot_accession": "Q03508", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/had-sak-1-pf10307.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10307", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/had-sak-1-pf10307.yaml" } ], "pfam_ids": [ "PF10307" ], "protein_name": "Uncharacterized protein C4.02c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLNVDIGLGTYDFSKWGYIDVHKIKEVHIYDFDNTLFQTPLPNANIWSNQAIRILMAFNILANGGWFFDPHVLAATGDGVEVEEKRAWEGWWNEKIVSQARESIRRPDVLAVLLTGRNEGFRGIVEKIIASKGLDFQGVVFKLQAPDGFWPQTLNFKLWFFNEVYRHFLYINSTRIYEDRPSHIEAFSAWLTERKKKNKNADFEIIAVAEPPKYLKFKVEIALVRGMLTAHNLKAPSLKLPLYKFVKNVIATVVTVPVAELHHIRNAFFNIPIAEIMESVSANSSRRNSHDSNSTIICEPEYPPDTSFNSSPGRLWIVTAIGRYRDEYWTVRAEAAEGYDCEKIHEIDVADIPSLYGTILYVSMSTGIVKSEIGDIGAQQWKTLAPSERWILRTNIRKECTYDIRYKRPYVSSLKYSDDDLTAGRASPMTGPTKRK", "sequence_length": 437, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "339873e43c9255cb3b3ecd0fa5a061bb996d4bb1ab1e54a3566da9eca45b90d5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9USS8.json", "taxon_id": "284812", "uniprot_accession": "Q9USS8", "uniprot_release": "2026_03" } ], "pfam_id": "PF10307", "short_name": "HAD_SAK_1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/rna-cap-binding-complex-go0034518.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034518", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/rna-cap-binding-complex-go0034518.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/snrna-export-from-nucleus-go0006408.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0006408", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/snrna-export-from-nucleus-go0006408.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ncbp3-pf10309.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10309", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ncbp3-pf10309.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/nucleotide-binding-alpha-beta-plait-domain-superfamily-ipr012677.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012677", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/nucleotide-binding-alpha-beta-plait-domain-superfamily-ipr012677.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q53F19", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10309" ], "protein_name": "Nuclear cap-binding protein subunit 3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7f21c89f92a6502f356d83204513fb43fd94e59f6e4ba9bb315c7784e17cc062", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAAVRGLRVSVKAEAPAGPALGLPSPEAESGVDRGEPEPMEVEEGELEIVPVRRSLKELIPDTSRRYENKAGSFITGIDVTSKEAIEKKEQRAKRFHFRSEVNLAQRNVALDRDMMKKAIPKVRLETIYICGVDEMSTQDVFSYFKEYPPAHIEWLDDTSCNVVWLDEMTATRALINMSSLPAQDKIRSRDASEDKSAEKRKKDKQEDSSDDDEAEEGEVEDENSSDVELDTLSQVEEESLLRNDLRPANKLAKGNRLFMRFATKDDKKELGAARRSQYYMKYGNPNYGGMKGILSNSWKRRYHSRRIQRDVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEEEEEEDQDMDADDRVVVEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVESQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLDEKRQHSRPRPPVSSTKSDIRQRLGKRPHSPEKAFSSNPVVRREPSSDVHSRLGVPRQDSKGLYADTREKKSGNLWTRLGSAPKTKEKNTKKVDHRAPGAEEDDSELQRAWGALIKEKEQSRQKKSRLDNLPSLQIEVSRESSSGSEAES", "sequence_length": 620, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7f21c89f92a6502f356d83204513fb43fd94e59f6e4ba9bb315c7784e17cc062", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q53F19.json", "taxon_id": "9606", "uniprot_accession": "Q53F19", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/snrna-export-from-nucleus-go0006408.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0006408", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/snrna-export-from-nucleus-go0006408.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ncbp3-pf10309.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10309", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ncbp3-pf10309.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/nucleotide-binding-alpha-beta-plait-domain-superfamily-ipr012677.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012677", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/nucleotide-binding-alpha-beta-plait-domain-superfamily-ipr012677.yaml" } ], "pfam_ids": [ "PF10309" ], "protein_name": "Nuclear cap-binding protein subunit 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAVRGLRVSVKAEAPAGPALGLPSPEVESGLERGEPEPMEVEEGELEIVPVRRSLKELLPDTSRRYENKAGSFITGIDVTSKEAIEKKEQRAKRFHFRAEVNLAQRNVALDRDMMKKAIPKVRLETIYICGVDEMSTQDIFSYFKEYPPAHIEWLDDTSCNVVWLDEMTATRALINMSSLPAQDKMRSRDASEDKSSEKNKKDKQEDSSDDDETEEGEVEDENSSDVELDTLSQVEEESLLRNDLRPANKLAKGNRLFMRFATKDDKKELGAARRSQYYMKYGNPNYGGMKGILSNSWKRRYHSRRIQRDVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEDQDMDADDRVVVEYHEELPGLKQPRERSLSRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVESQLKSIRNPMRADSISTSNIKNRIGNKLPPEKFADVRHLLDEKRQHSCPRPAVSSTKPDIRQRLGKRPYSPEKAFSSNQVVRREPSSDVHSRLGVPRQDVKGLYSDTRERKSGGLWTRLGSTPKTKEKNTKKVDHRASGAEEDDSELQRAWGALIKEKEESRQKKSRLDSLPSLQIEVSRESSSGSEAES", "sequence_length": 615, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1b9ca2e3065dfce72344568f385abb4e3c920c39f462c6b28d2f85e8b34e3460", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BZR9.json", "taxon_id": "10090", "uniprot_accession": "Q8BZR9", "uniprot_release": "2026_03" } ], "pfam_id": "PF10309", "short_name": "NCBP3", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5427-pf10310.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10310", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5427-pf10310.yaml" } ], "pfam_ids": [ "PF10310" ], "protein_name": "Maintenance of telomere capping protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAETKEQTDDVETLMASLDQLGMEADPTSKEFNNDDSKIGAPSEVQDEKELLEFLDQLENDEEKNEKNPIEEANEENESVAATSNERQQHDASNQPSQAAQTTINKNTESATPKTVNEINKSQEFQEHVETPKQSNWLGGFWSTASAAVRSAEQRVRSIKGFEENANWDINVRNMVDLNKLGDLSNGIRSKALPTLSNTIHNVLNVVAPPIHDHEVLQVTVFHDLAGFAHLDRIVYESFEKVMFQVEGGELTVLLDKEAKVRPRTNDVYEDFGLCNGYLEAKKLAKANLAEPITEAKKMNKENKQENVGAGDDEDASESPMVRVTHLLLVIQAFTIKNKEVSDDEQLCFLIHLNDTNHNLEFSTTSQPLPLEWQRWAVDPRYIKLFGSNAILPNEWVTEWVEQSISVAAGIVAQMYTSKRMALGDPSLFAGLPEEDVNTGSSETPVPYYDGAMYA", "sequence_length": 455, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "805d44207ad8cefb2c7e7f5f36c24f060cc200b2d5b576d427489a3371a1f095", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O94548.json", "taxon_id": "284812", "uniprot_accession": "O94548", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5427-pf10310.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10310", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5427-pf10310.yaml" } ], "pfam_ids": [ "PF10310" ], "protein_name": "Maintenance of telomere capping protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSENKNSEAEDVFEFLDSLPEAKNGGKMVNTDVKGSQEGVKGGSNSVAGKTGNDGKKGDDDIFEFLEELEKSNLSLTDKKGVEKKAPSESVNNKAQDEKVEESKENKNSEQDAHGKEKEPQQQEKEEEEEEEEEEEEEEEETPLHDPIASISNWWSSSGSAKVSSIWNKTAEQASQIKNRLAQEQLDLTSKINTSTITEIARNLQKIVVGETEEVLRIHLVHDLVNYPSLQYNIESKFDQVLSSQVEGGIRIFVDEWGHPNNNGITPVEKKPSVADGELGNSKKKLQFNLFDGKVTDGEKLAFANLENAVKLFNTAHEEYQKQQKEADATPDDDRSSISSNSNKISDLFISILPIAIPQKQKDADGDFQVTDSNTPGNFNFTLVLKDITNDITTITRSQGFPVKWVNWLEGSVEKTGSTASEERNKSYDQKKQKESEDEDEDDEIIDPSEWVKEWIEDGLSLSFGVMAQNYVIDRMGL", "sequence_length": 478, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "11306fc4b6e4fe059207f00ad3eac9955ea3d7d07792c3e449dffdf259d60b8b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47018.json", "taxon_id": "559292", "uniprot_accession": "P47018", "uniprot_release": "2026_03" } ], "pfam_id": "PF10310", "short_name": "DUF5427", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf2415-pf10313.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10313", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf2415-pf10313.yaml" } ], "pfam_ids": [ "PF10313" ], "protein_name": "Uncharacterized protein C4G3.03", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVDNRCSNSSLCLRNVTPKQHPARVCSNHWQLKNLISTQNTGEESNPIYYTNSVFVWKIYPNSEKVVQVGQGLSFKPLSLLGKCGYIAAGGQLGEFDYWSPTSKQTHMKLCDQHNNGIEIHRRNCDSHAEALISSNDHTIKVVDLEHGLLRKQLHFPVNMNHASVSNDGRFMVCVGDSPQVFFYEIDRSGEYHLRHTTVADTTDSSFCTSISQRNELFAVASQDSSLSVFDVRYLRTPMLTKTSSRPDPNGSIRSCHFTPPNGGPLDLLLYSEGFSYSHLLDLRTGKDVELVLPSEDRFFSPASQDIFGSCFADDGSSVYVASATHLYEWNIDKRSRICFPSYQLL", "sequence_length": 347, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e408d1d77ba9bba72dd9819ca173504dc2c0b5979cc6d9470dfafb77e9d57142", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P87229.json", "taxon_id": "284812", "uniprot_accession": "P87229", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2415-ipr019417.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019417", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2415-ipr019417.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf2415-pf10313.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10313", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf2415-pf10313.yaml" } ], "pfam_ids": [ "PF10313" ], "protein_name": "Uncharacterized protein YLR149C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIDGTGQSKEALQDERLNTGSDKVYQNYMMPALELYDAKVSINHWQLRDCIKPGSMNQSKLYYIYDHSIRVLDTDSSVLRSPVRRHNSIQPSNSGKNSTEKTSTKGSRTTGSYISKNLHVPSEKLVEFNFKPRCFTELNGLTVCGGLIGSDDKGFPSNWNRLAQDANISLPPPSQPINISKNISFPINSHYSNPNIWKGIVEFYNQETDTMMTFTLGQFINNCVTLYDRASMQFDLFACNNDGHLYQCDVSNRDVTLVKRYADLKFPLNNASLSHDGQTMVVSGDSNKFAVYNQNELTNQFSLHYDNHPSWGSSVNRVRRIPRFALPDESEYIENIYEAPNSDHGFYNSFSENDLQFATVFQNGTCAIYDIRNMATPMAEISSTRPHSHNGAFRVCRFSYGLDDLLFISEHQGRVHVVDTRNYVNHQVIVIPDKVNMEYINERKHNTNHNFTTNNNNENESNDSKNELQGADYRSLSRRRFSLPSMPNVTTEPWITMAQRIPKKYLEPQILPFPKVMDKISNESVLFSTKGSSSSDVAHPYKRRCSFRVRRVSTSAPTADYSNNNVNASLGTPAADSIATSSSNSAPQNLIDPLILSHQQASNDVFEDDEYYEAYNDVHSTYRVSSDYHGVSARAFESFLRPPSTPDLPSDDDNFAANSRNNRGTSNFLRRPVITTQESNEFSEENNISGIDWVEDRNGSSLIIGTDYGIMRWNINSWARRSFSSYDLC", "sequence_length": 730, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e7ea88bb4d3f87f61aa0a93e3ca2daacc8082363a576275ba294e4d77104e8fb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q99296.json", "taxon_id": "559292", "uniprot_accession": "Q99296", "uniprot_release": "2026_03" } ], "pfam_id": "PF10313", "short_name": "DUF2415", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/aim19-pf10315.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10315", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/aim19-pf10315.yaml" } ], "pfam_ids": [ "PF10315" ], "protein_name": "Altered inheritance of mitochondria protein 19, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAKPATDDAKDELLSPFRRLYALTRTPYPALANAALLASTPVLSPSFKVPPTQSPALSIPMSRVFSKSSTARIGITTKTALFFSTMQAIGAYMIYDNDLENGAGFIATWSALYLIVGGKKSFSALRYGRTWPLVLSSVSLANAVLYGQRFLATGFQ", "sequence_length": 157, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8c887c8e4ab2b7e29247a795a7610235663d3b5b710eb47fc9a6218cf55a8c82", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40502.json", "taxon_id": "559292", "uniprot_accession": "P40502", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/aim19-pf10315.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10315", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/aim19-pf10315.yaml" } ], "pfam_ids": [ "PF10315" ], "protein_name": "Altered inheritance of mitochondria protein 19 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENKELRKSYFQRIYQSYIPAYAFGGALIASVPRAFKRPYGGPFVPGCLLCGGFNAIGGLAIASGDLTNGSGICTAWSIAYLMINATKSIKSFRLYPIALTTFATANAVGYGKTFMNEY", "sequence_length": 119, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e4f6696974b6c259f059c23a2905f86919c90e54fc3e6261d2853aaeca6d494e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UUF4.json", "taxon_id": "284812", "uniprot_accession": "Q9UUF4", "uniprot_release": "2026_03" } ], "pfam_id": "PF10315", "short_name": "Aim19", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain YJM789)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2417-pf10329.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10329", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2417-pf10329.yaml" } ], "pfam_ids": [ "PF00561", "PF10329" ], "protein_name": "Uncharacterized vacuolar membrane protein SCY_4679", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKANGLDNDPARTRMERTDIDSEHPEAQPLLNNNHRTLGAGSANGPAVNEGRDIESDGFIKDSLFQIRKGYRIFIHNSKWILNILILINTIWLVTTLISDFFFNINILFGFSNRYASFNDLTLIFISIIANSFNLWFNKLGLYSALDYSLNVTLCVLTLFNLALTYLIKYTRQRIGFVGTFTYLWTSFSFFIGAILDWYLLFYNNSINEPLEERRIDDANISTFNENHTNSTENRDRSQYGSGSPTPTHRSQLVQNKHTLTEWVSIGFRNTIKFLILIFFALFTLNTLLTTLDTYRLTHKLPITVQSPSYEAFHYVDAAKTYQLHITCYGDVFDQENNTDLSENKKQPIILFEHGGYDTGYLSATWIEELYHLDKIQRYCLYDRPGYGLSDSPPAPISIAMVAESLRYALIKDAKIKGPFTTVGYDLGGLFTRVFTAKNVDIVDSMMLVESWHEELLLKNYIQRLLPPGRGDGDDGDDGNGNDGDGRNHDKTWLPSEIERHNEFRLWWKGIWSSLGWRLQTSWLLAHHGSKERIYGRDMKYQGRFLRSKFLESVTSSILSYRDVTNNAESLQNVKTSIVSSKEMVKKSALWGDWQRDLTKISHKTQEWKIVEGGHEIYKYGLGKQQTQEVLLRLIGELGKLTED", "sequence_length": 644, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b11b30b5a031304790cf3c508761384ce4424cec15403b412ad600fd8a490664", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6ZRW8.json", "taxon_id": "307796", "uniprot_accession": "A6ZRW8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2417-pf10329.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10329", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2417-pf10329.yaml" } ], "pfam_ids": [ "PF00561", "PF10329" ], "protein_name": "Uncharacterized protein C23C11.06c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTSQDVNAEAANERSALLPRFLGSHRGNVPENTDTYALTPLFYWIRSTSVGLLLITIICHLFLLLNIFISIPIISHLSPGFMPVGFTALAAILLAMQIMFVYSPNAPERVTQRIICFLLAIDVLVVFLSPILRHREGWRSNAFVLWAFLMSLWIVITDLMLFRQYKEEHPDYDAIAHRGYYWSWSPSTWPWRQVGSLTASTILSVILTILTIHTLVTLIMRAYDGALSAPGQLYTVTDSKARVHLECFGSSSSNNKTTVLVEGGEVSVHPFKEWLLNLQHTSPDLYEESKDFEGYENDVKPYLSPDTRVCVWDRPGMGWSDNIGSPSSVGIVMDLLTEALAQADVSGPYVLVAHGIGGVYSNVFAARHLSEVKGIVFVDAGSVQTLKDSGQFLSRFLLFVRGWLSPLGINRIFGSIFMGKTRQDRVYGMYSWTSDRWVKSKIEESLTGPSFSRYELQSAQSVLPKDLPVSVISAGKSMKRFKKWPDEQRQLSKLTQRTVWDIVNNAPHDVWLSDDGGDLIMKRLGEIIYGGWPN", "sequence_length": 535, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c659dfb41284e0c01d5442a233d3b664685f85e0351af2854b121eac4f1e472b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O13912.json", "taxon_id": "284812", "uniprot_accession": "O13912", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2417-pf10329.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10329", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2417-pf10329.yaml" } ], "pfam_ids": [ "PF00561", "PF10329" ], "protein_name": "Uncharacterized vacuolar membrane protein YNL115C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKANGLDNDPARTGMERTDIDSEHPEAQPLLNNNHRTLGAGSANGPAVNEGRDIESDGFIKDSLFQIRKGYRIFIHNSKWILNILILINTIWLVTTLISDFFFNINILFGFSNRYASFNDLTLIFISIIANSFNLWFNKLGLYSALDYSLNVTLCVLTLFNLALTYLIKYTRQRIGFVGTFTYLWTSFSFFIGAILDWYLLFYNNSINEPLEERRIDDANISTFNENHTNSTENRDRSQYGSGSPTPTHRSQLVQNKHTLTEWVSIGFRNTIKFLILIFFALFTLNTLLTTLDTYRLTHKLPITVQSPSYEAFHYVDAAKTYQLHITCYGDVFDQENNTDLSENKKQPIILFEHGGYDTGYLSATWIEELYHLDKIQRYCLYDRPGYGLSDSPPAPISIAMVAESLRYALIKDAKIKGPFTTVGYDLGGLFTRVFTAKNVDIVDSMMLVESWHEELLLKNYIQRLLPPGRGDGDDGDDGNGNDGDGRNHDKTWLPSEIERHNEFRLWWKGIWSSLGWRLQTSWLLAHHGSKERIYGRDMKYQGRFLRSKFLESVTSSILSYRDVTNNAESLQNVKTSIVSSKEMVKKSALWGDWQRDLTKISHKTQEWKIVEGGHEIYKYGLGKQQTQEVLLRLIGELGKLTED", "sequence_length": 644, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "64b8029c7cbf12fe9c7bcb01bdfc37323095e9bab125124424016ea06fd48d99", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53925.json", "taxon_id": "559292", "uniprot_accession": "P53925", "uniprot_release": "2026_03" } ], "pfam_id": "PF10329", "short_name": "DUF2417", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain YJM789)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2418-pf10332.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10332", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2418-pf10332.yaml" } ], "pfam_ids": [ "PF10332" ], "protein_name": "Nuclear rim protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSNDLINEAYDDSEVVGEERESKSAWMKRWYQLLTSPLDLQLVINEKLEMINWDAYAKSLAKPLGNFLTILFFIIRLLQDNLIKPNYYKLNVKSGAFDLSKSNKLKEFDYLWEISSSFQNSNQFYAFQSWYFVTLRFLNNLFRFTIFILLSLNLYVSCKFMFGYFKTYNLFHLKKEFNSPNLTKHNLKDLSKEYYEDIYKQSLWSMLKHFFRGSRDDGPHVNQNEVEIFFQLRKWIPTNFMINLFVSFSPTAIVFLSFSDVSFTSAIAIVFHQYILDYIITKRFQRSVDDDLILSSAALQEYEDKHIMARINQCSNIDTLSSAMGTRSKTPRIFTTHSLCGEEIREVYNYEKREFEALPKMTESVPGSRETRIKDYGGISQVSDNQSHPIGFHYSPRMSPYYRDKVLDNNLAQSSSNENLEKGGAFLPNQDQNRPSKSLSPLRKTPLSARQKRFEGSEFNVLNKNDINSILRSPKKKKNYHKR", "sequence_length": 484, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c1251ac9c68248da2f1f70fa08034a00de8c836cd138ca74ed82833d4462af0d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6ZXN8.json", "taxon_id": "307796", "uniprot_accession": "A6ZXN8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2418-pf10332.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10332", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2418-pf10332.yaml" } ], "pfam_ids": [ "PF10332" ], "protein_name": "Meiotically up-regulated gene 154 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKLIRRTSLTSKIINLPIDYFIYVCEQFDSVEWDKVSDRYSIPFSLAVNFIFLLMRIYIKSTHVPVQRNQLFVDKQSINTSRSWFRAFLSFLSICFLFISFLNFIFSTRFQNKLYRTLPQDKRTTTSTPNVKPVFQHSNNDDGDEQVFELKVWSPNQFLLNFACLFSPAHALILWFYSTSLRVTLLTFLLSFTTLHFVNKFSLLLKDQQYLHRQVFFEYDKKFVEPRLSVVKRDVAINTTRGPTTASIEYFTPRKPIDTFLEHRSSSHDHLTSTPRTPIALQRRSVHHLHDSGISRDSSSPFKRFPHLSDGSSRF", "sequence_length": 316, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "160fc466be0c02c8b82e0df3e1c577d08b4b0bc06a5e480ec676a9bc1ddd0ec6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P87236.json", "taxon_id": "284812", "uniprot_accession": "P87236", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2418-pf10332.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10332", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2418-pf10332.yaml" } ], "pfam_ids": [ "PF10332" ], "protein_name": "Nuclear rim protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSNDLINEAYDDSEVVGEERESKSAWMKRWYQLLTSPLDLQLVINEKLEMINWDAYAKSLAKPLGNFLTILFFIIRLLQDNLIKPNYYKLNVKSGAFDLSKSNKLKEFDYLWEISSSFQNNNQFYAFQSWYFVTLRFLNNLFRFTIFILLSLNLYVSCKFMFGYFKTYNLFHLKKEFNSPNLTKHNLKDLSKEYYEDIYKQSLWSMLKHFFRGSRDDGPHVNQNEDEIFFQLRKWIPTNFMINLFVSFSPTAIVFLSFSDVSFTSAIAIVFHQYILDYIITKRFQRSVDDDLILSSAALQEYEDKHIMARINQCSNIDTLSSAMGTRSKTPRIFTTHSLCGEEIREVYNYEKREFEALPKMTESVPGSRETRIKDYGGISQVSDHQSHPIGFHYSPRMSPYYRDKVLDNNLAQSSSNENLEKGGAYLPNQDQNRPSKSLSPLRKTPLSARQKRFEGSEFNVLNKNDINSILRSPKKKKNYHKR", "sequence_length": 484, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b2870c224def9f97bab6871c076246ea391edf3a8cc9959d864408f9d2444e67", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12066.json", "taxon_id": "559292", "uniprot_accession": "Q12066", "uniprot_release": "2026_03" } ], "pfam_id": "PF10332", "short_name": "DUF2418", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/brefeldin-a-sensitivity-protein-related-domain-of-unknown-function-duf-ipr018820.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018820", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/brefeldin-a-sensitivity-protein-related-domain-of-unknown-function-duf-ipr018820.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/integral-membrane-bound-transporter-domain-ipr049453.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049453", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/integral-membrane-bound-transporter-domain-ipr049453.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/putative-er-transporter-6tm-n-terminal-ipr018823.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/putative-er-transporter-6tm-n-terminal-ipr018823.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bre4-pf10334.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bre4-pf10334.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/arae-2-n-pf10337.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10337", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/arae-2-n-pf10337.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fusc-2-pf13515.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13515", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fusc-2-pf13515.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P53120", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10334", "PF10337", "PF13515" ], "protein_name": "Uncharacterized membrane protein YGL140C", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "76eb0d13ebc44bbb27ac0c94c4a28633379bb94de6cea78fde0e21c6c244d02b", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSLKSKLTKIQKLWLYYFPCDRILAKRICKSTVNTTVAFIFCLIPKITAHLGAAPAMLPMISVIVHPGRRVGGTIHGAIYCITGLIFGLAYAIFGRFLAQRCLGSSWHELTEAQQHVLHYKRYEAGLAILAVFEVIMLFFHGWMRSVSHYYFGIVFPLFVVVHFAFMDPLNETAGTIAKAYSTPFYLGIAMSIFWNLVLFPEWGTTYLGNTTIDAMNELHKSIDYSINFFIAVDPHNSSQLYSRDPVSLGKLLKMKSLISSKVNNCRVVLHECIYEFTYAYVSPTKLKPIISTLENLTVFINGLVNTCQLEFILLARHDNKLRPDDVAALTLPKNKEISFANAEKLLKVIDKLHPVIYSLHRTMSECMYIAKLVLAHAFDVKVSRVHSCSMFKDGNFPTFSNNANNLPNDVDIQNKINDLKQALEECKAKFKSEMLSFDIDIMSPSDEMFLLSSFLLNFRQTADSTLVIMESVKDILVKRQIQEKKGWLRGKRLWFLVLTNYETFSIWLKGDRNSVTENDTLKGTFNGNTNGFAHDTVIRRPDYEENELLSQKVSSNKNIVKDDASLDLPMTSEPKGNSSSTSDTSSSPLTLTKTTTFGTNRTSRRQGRFSFMSMLISIDKFCEVSHPHFRFGFQVAIALMLASFPMFIPKTRQWYIDYRGTWIGFVCILCLEPSVGGTFWVFFLRAVGVIFGAAWGYLSYVAAVNQTNPYLETVITVFGAIPGFYYLLGTPYVKAAIIEIISIYIVMLAAILPSQDDILTSFAKRCLAVGYGGGVALIVQVFFFPLKAREQLNEEISFVCGCISEMELLYATGLEGEQVASSMSEEKYKKIEKISKSAKEALARATAYKGLTRQEPRLKGEYTELENVFTQVIFIQKQIIERIDTISLLRKQNGSAVIEEFNSVVYPYRRQMVGSISCLMRALQEAFINKTPLPQFLPSARIAHRRLINKVRQTLRIRYPGQISNLSDKARKPNEGDYADGKDEDDDDNEGLVMKMNRRGQANTTANPHEYVLKEKFLSWNASSAASEEIIEYIEELLNLTKILVGVNEFKYGFLSRPLYEDWAAEAVTGFDNFINGKSNPMNTRRNRTPFDGTSIISEGNESLQSTNSNESQISPDSTRSYEPECPVAYEKNDNPAALNLLRIASHKAGQNADGLPKTFRNRAFSITSTSGQLSSLSRHSTLGNADPNYLNDDDESSDDDLPLALKMVLSHMKEKKD", "sequence_length": 1219, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "76eb0d13ebc44bbb27ac0c94c4a28633379bb94de6cea78fde0e21c6c244d02b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53120.json", "taxon_id": "559292", "uniprot_accession": "P53120", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/arae-2-n-pf10337.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10337", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/arae-2-n-pf10337.yaml" } ], "pfam_ids": [ "PF10334", "PF10337", "PF13515" ], "protein_name": "Uncharacterized protein C57A7.05", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPTSGAPSNLDRANAQLSNTSSTESSSSNNSSTASGSRHVKIESNRVSLPPLKIQKGSFPAIRQPTESSTHFQSSHSVSNAHNQSPLNQSQSSANPVTFEIADEPSPSFNHSFFEKDNARDIPQQPSHSQNPSSSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKNPDAWNLPPSLQFIPKNLNRKGLKPVIRAAINSWIAFLLVLARHTNRVLGMSSFFVVITSILVPAMEPIAPMLWKTLFQFLLLFSAYAWTVLAAKLATVARGSPSREASLAQAVSEGFVCPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYPPLNFPCVFSIICTAVSANMGPMYPYFYPRIGLFFIVPNCVQTGITIGCTLFILPETCNHAYNTMLCKLTEDTSSFLKRQTEMLSHSPASSHWASFSSLENEIANLKNLLSKMKSTELFLDMEFSYGRLKGEDLVSIQRIFKKTILRLSAFSYFQRLIDHNMQIYDDETIQKAGEATVSSWLNTPALSAASARTSSGRNSSESDRVSYFGLAPVNATTQDSERNGEEIRRLASKQLNVPVNNNFRTVGYASPSNASTASFNDIVQRGRSHVRTGSNNSEAPLAAKTSTTKRNGDLLEPQSPSLRSHKSRLHLPSSLGKFYKKRKKSYKPVGVLEAQQYLALESRLPFNKPQFLDSLLSILKNSSGDLFDQAIYSLDALNAWLVELNHDRIKKIFSKRDQKAAGRDRLKLIKLHYDHLSQALHEYEREKCFDVRKPYESLFQNQDVQQFYMHSLRSLFVVYYYESHLMQAVRGILQILETVIDLEERRPIRRLWWPLRSIRRSLLSQLTGHQGDYDENIHNDVDKDMNQSSTQPRDPDADHPSSLYHICGYRLTKFFKSIFRPMNVFVLKVGTLAVICTIPAFCRSSAGWYYRNRGLWAVILAIMSLQRFTADTVYGYLMRIFGTFFGAILGMVIWYTGSGHGLGNAYGLAAVWGAAIPFIQFIRVHFVILTPMPAVIFCVTAALTVTYSWKSNHEPGVVTLGIGWDVAYRRFLTVAAGITVAFIFSFLPQPRTAKYAVRKNIGNTLIDIGSIHCEISNFARRPVHNHIDPDIQSKVLNLSNTIQSLIGRLNMVNFEPSFKGRWPMEKYQLLCKTQLELVDLLNSLMTTITTLEDRWLFALLYRVGWLDHKFVADQLAVLYMSSNALQTGNPLPQVVPSPLVDRFFTTSGDVFLPPGLNDAPVPIPKAMEYELLNNMQYLNFAVGCTIAYAVVNHIDRIMFITKSLCGEIFEIDKWPFHFDDEYLYTCHPTNSPDQRKSPHDLV", "sequence_length": 1337, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ad86b0a937e1e4d0f0d1335a301ccc6d7b424a5788c20a070cd526d599e43860", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P87136.json", "taxon_id": "284812", "uniprot_accession": "P87136", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/brefeldin-a-sensitivity-protein-related-domain-of-unknown-function-duf-ipr018820.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018820", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/brefeldin-a-sensitivity-protein-related-domain-of-unknown-function-duf-ipr018820.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bre4-pf10334.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bre4-pf10334.yaml" } ], "pfam_ids": [ "PF10334" ], "protein_name": "Protein BRE4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRYERDRSPTPDPDIVKGSYSQTSLRSLHELNYKNPAGISGLSFAGSPQQSVASLSQMRLENLVKDKHWEEVEDFGLEELRDGFFDAAFTKPDSKARSPNSDIDDDNGAARKKLQSGFTKLSEYVWTAIYRPIIHFPRDIRKNGVSIFKFFIAYFIAIVICVIRPSGRWIGHEFRYFLPIAVLIHHPVRNIGVQLEMTISSIIGASFGLGWSALAWYISTATKPTANYQGGILFQSLTMALLFAIWLRSVYRRFFYFTTSFSISIIFTHTVRLASSKFDLKWQIFWDFGISYLFGLLLSLLVCVCVSPHSGNAELMEHYNKCLQTTKTFLMALVDTELIKSKEQIYLAQVKMVKTLNIDLSQGFRDFVNQLTISRFDLQSLKSLRNSLTAMETSLRVLPIAPKIFNDDELKKMYEELEKYRSDSATLSKEASASPQSSGIPTRENTPSAFKPIGPGLLKNEIYINALKASFSKSIFNLILEMIFVLENLSRVLKKYESPNQKNNLDECVKILSHSHSKLKRKIYKLDVCYRDFVNSSFFSQELLNDEESVDIFLFLRYLRNSARQLVTVIHDCQVLGENIHWRIALPSYPLSRALTRLPKQCVLDEGAGNVLHYFEAKRDVDEIFERVYNTYTSRHKYNKGEEEALRLDSQGGDEKSQNRKNHTISIRAIDHNDFNFHTTQNPWRFKLWKLSRILSGDECKWTLKITFCMIFLCLPTWLPESYHWYQEFHCWWAPLTFYLLAHRRYSGNWALVMRRLICGIVGIFWGWAANQSRHFGSPYVVCTFAGLIVVPFSINFLVYRNTKSSFTALMCFTIIALEPYSKPNRHYNLTTAGIWKSTWVTGLALIIGILVSIPINWIVWPFRARTELRDSMSSLLAHLGQSYQTVADRYLYRDADDAPTDLTFAFSHIREVRLTQSLEAIRELLKKARHEPIIISNFNPEKYASLINSCQFLLSKIIEARISGAFFEIWDQDFDIETTRALLSLRRDSVSSVIFVFYILSNCFRSKNKIPRYLPNPIMSRKKLYHFIKKFSEMKDQSHSNLNSGGNSMEKNLFKKIYQQKASSSGQQQLPLPSVANSSEIDSEKMHWTEVHGIAFARAFTDISEALFQVESCAKDILGEENF", "sequence_length": 1125, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "df2837a306b8e8ecbf63fc70df07612558788ead9b04c7d5b15e9f42814e7f9e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q07660.json", "taxon_id": "559292", "uniprot_accession": "Q07660", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bre4-pf10334.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bre4-pf10334.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/arae-2-n-pf10337.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10337", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/arae-2-n-pf10337.yaml" } ], "pfam_ids": [ "PF10334", "PF10337", "PF11744" ], "protein_name": "Uncharacterized protein C26F1.08c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNFHHGWTFHKLRKNEHFLKYSAIFYSLLKPVVALFACQCLVLIRPLARKIGSFPFLILTFHTLFYPIQNTVGAQFEVIGQSLMGTAVGVTWGIITKLFATAANRNHGDGSPILATSLALASFISAYIRSRYGYRFFCIIWIFIDCFLLTRDPFEKTIAKSFYISLVYPSLIAAGVVSLVTILVPPMRMASDLVGQSGLDHLNKIMQSLNFSVENFFPSDESVSFSSSSSVIKRMFKEHESVLRNSMDDFHTAISSSEIELNYSNVSVSTLKLLEPKFERITLAMSAQLAASFTLYETYNFSIYKNQDKEVEGDIRVSELRFSLPESTEVQQKRNIFTPQYQLHINGSLRAKVRPKDSKDRIVNLSNLYFSNVDHMSSLILGSLKLAHAIMKWLVSDVEHIPDERLRECIESLQEIDSKEENLMTEIFCTAFKETKKVNDFGGFEEIEDEEEVLVIAYYLFNLFEVAREVKNLLLLLEGLKAQRHNKPKLFFRKFNLSLFDKQKYANYAISALLTHFTAGDADKCDDEAPDDASGEEDDSPKVLNDQSFFDSVRYPLKFFLRKMRRKCWRVYHFTARSKDVRYGLKMAIGIGLLSIVAFQKSTAARYTLWNGQWSLISTLFVLEVTVSTTLRVGLFRTLGTLSGAVYAYAAWEVSQGWSYAIATLTFAISWVSCYVKYNTEYSGIATVFNITFPPILYGSYLKTSTISPFHLACIRFIVVNVGIGMAIVVNIVVFPYLARRVLKYKLGQASLLSLKQYTTLSDYLLSRNLYTNLTICEGYKKQISSLLVTARKLLQLVNMEFNLKGPFPVGIYNDLIIKLENLGIRLVVLNRVRSRFGLYLYYDVVKNMIDYRKDLIVSMTLTFYILYNSIMSKAPIPYFVPSCRQALWNLRLAIEEEGKRRFVTNGGILAQGAGSDGVAKDVPENHSWLPAQKNFFLYYVECQVIGDIVTDLEYSISLVRRINGEKENETIGKKMA", "sequence_length": 977, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "baf8a8c42705318fa64a2e9cb47b72202e136d700d0d7bd3fcef8862389ec5d8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q10495.json", "taxon_id": "284812", "uniprot_accession": "Q10495", "uniprot_release": "2026_03" } ], "pfam_id": "PF10334", "short_name": "BRE4", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2420-pf10336.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10336", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2420-pf10336.yaml" } ], "pfam_ids": [ "PF10336" ], "protein_name": "Reduced meiotic recombination protein C1442.04c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGVSPVVNHPYTTNSGDFIELGMEPAQKVQVDLDEAFNQMLHDGKVEEVVEAINGSPDLLSESDVENAKNNEHTYDIDNKNFNFEPKNSVNKTETIREELDQAASKILIETLDLHQKEGFEETIVTEEATDAVDLEAKGTTHGENDLDEVPTELNELANEVVDVDDVVSPSSELNAQSVNNILPISDDPKDSTSEAETRDFNWLSKGIVIFPNSSECAFYGNNNDEGMYLYSNGDDLNENTIEDFFGLVRARLESLNLLDSDSELLCEFPDLSLKINEDNVYASQIHLVDILEILTVHCDLEESFSIVFSTQPRFIARYNELVQAVSSSSNSEIDEVEDAETIDSKILEKRNDLNNEEPNSVVAEDGSEIITLDENDQSPNEATEKLRDNDLEESLIKDENLEDVEDENVKLDNYNIDGSLNNADLSQEPITNDGENVDWEATSEDVLERGYESAFPESEGTINSSKRRLSVTTDTENIELSDELASAGTPKKSKLMPSDD", "sequence_length": 502, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d35e23d991b130468daec81ae55a344162524443f63e1033aee32772145fb407", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O94577.json", "taxon_id": "284812", "uniprot_accession": "O94577", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/meiotic-gene-conversion-go0006311.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0006311", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/meiotic-gene-conversion-go0006311.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2420-pf10336.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10336", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2420-pf10336.yaml" } ], "pfam_ids": [ "PF10336" ], "protein_name": "Reduced meiotic recombination protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEEEAHKTVEVDDVGVQLDEGDEEDLLEYDDELVEEQPSDARIRNVAETLMKSELPKVTVEYKDTTFLLFTSDDKNESNNPIICENAALYQRPMGEFMESIRKFMGNRFGRLAFATKELVLQLKSLDLTLFEDNVYNNHISFSDVYTIFKILKERSESNFETDIPTHLAIELSTRPRFVSRYNALVELTESSATLKNIKPFSNDETHPLIVDDNDQYTHQNTSEVIVMDIDDDVGEDSED", "sequence_length": 241, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f832abe9040797fd6ce04d576316ec238bd31ee08fe09d9e545504e1a021dc18", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P53060.json", "taxon_id": "559292", "uniprot_accession": "P53060", "uniprot_release": "2026_03" } ], "pfam_id": "PF10336", "short_name": "DUF2420", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/brefeldin-a-sensitivity-protein-related-domain-of-unknown-function-duf-ipr018820.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018820", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/brefeldin-a-sensitivity-protein-related-domain-of-unknown-function-duf-ipr018820.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/integral-membrane-bound-transporter-domain-ipr049453.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049453", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/integral-membrane-bound-transporter-domain-ipr049453.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/putative-er-transporter-6tm-n-terminal-ipr018823.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/putative-er-transporter-6tm-n-terminal-ipr018823.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bre4-pf10334.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bre4-pf10334.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/arae-2-n-pf10337.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10337", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/arae-2-n-pf10337.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fusc-2-pf13515.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13515", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fusc-2-pf13515.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P53120", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10334", "PF10337", "PF13515" ], "protein_name": "Uncharacterized membrane protein YGL140C", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "76eb0d13ebc44bbb27ac0c94c4a28633379bb94de6cea78fde0e21c6c244d02b", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSLKSKLTKIQKLWLYYFPCDRILAKRICKSTVNTTVAFIFCLIPKITAHLGAAPAMLPMISVIVHPGRRVGGTIHGAIYCITGLIFGLAYAIFGRFLAQRCLGSSWHELTEAQQHVLHYKRYEAGLAILAVFEVIMLFFHGWMRSVSHYYFGIVFPLFVVVHFAFMDPLNETAGTIAKAYSTPFYLGIAMSIFWNLVLFPEWGTTYLGNTTIDAMNELHKSIDYSINFFIAVDPHNSSQLYSRDPVSLGKLLKMKSLISSKVNNCRVVLHECIYEFTYAYVSPTKLKPIISTLENLTVFINGLVNTCQLEFILLARHDNKLRPDDVAALTLPKNKEISFANAEKLLKVIDKLHPVIYSLHRTMSECMYIAKLVLAHAFDVKVSRVHSCSMFKDGNFPTFSNNANNLPNDVDIQNKINDLKQALEECKAKFKSEMLSFDIDIMSPSDEMFLLSSFLLNFRQTADSTLVIMESVKDILVKRQIQEKKGWLRGKRLWFLVLTNYETFSIWLKGDRNSVTENDTLKGTFNGNTNGFAHDTVIRRPDYEENELLSQKVSSNKNIVKDDASLDLPMTSEPKGNSSSTSDTSSSPLTLTKTTTFGTNRTSRRQGRFSFMSMLISIDKFCEVSHPHFRFGFQVAIALMLASFPMFIPKTRQWYIDYRGTWIGFVCILCLEPSVGGTFWVFFLRAVGVIFGAAWGYLSYVAAVNQTNPYLETVITVFGAIPGFYYLLGTPYVKAAIIEIISIYIVMLAAILPSQDDILTSFAKRCLAVGYGGGVALIVQVFFFPLKAREQLNEEISFVCGCISEMELLYATGLEGEQVASSMSEEKYKKIEKISKSAKEALARATAYKGLTRQEPRLKGEYTELENVFTQVIFIQKQIIERIDTISLLRKQNGSAVIEEFNSVVYPYRRQMVGSISCLMRALQEAFINKTPLPQFLPSARIAHRRLINKVRQTLRIRYPGQISNLSDKARKPNEGDYADGKDEDDDDNEGLVMKMNRRGQANTTANPHEYVLKEKFLSWNASSAASEEIIEYIEELLNLTKILVGVNEFKYGFLSRPLYEDWAAEAVTGFDNFINGKSNPMNTRRNRTPFDGTSIISEGNESLQSTNSNESQISPDSTRSYEPECPVAYEKNDNPAALNLLRIASHKAGQNADGLPKTFRNRAFSITSTSGQLSSLSRHSTLGNADPNYLNDDDESSDDDLPLALKMVLSHMKEKKD", "sequence_length": 1219, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "76eb0d13ebc44bbb27ac0c94c4a28633379bb94de6cea78fde0e21c6c244d02b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53120.json", "taxon_id": "559292", "uniprot_accession": "P53120", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/arae-2-n-pf10337.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10337", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/arae-2-n-pf10337.yaml" } ], "pfam_ids": [ "PF10334", "PF10337", "PF13515" ], "protein_name": "Uncharacterized protein C57A7.05", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPTSGAPSNLDRANAQLSNTSSTESSSSNNSSTASGSRHVKIESNRVSLPPLKIQKGSFPAIRQPTESSTHFQSSHSVSNAHNQSPLNQSQSSANPVTFEIADEPSPSFNHSFFEKDNARDIPQQPSHSQNPSSSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKNPDAWNLPPSLQFIPKNLNRKGLKPVIRAAINSWIAFLLVLARHTNRVLGMSSFFVVITSILVPAMEPIAPMLWKTLFQFLLLFSAYAWTVLAAKLATVARGSPSREASLAQAVSEGFVCPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYPPLNFPCVFSIICTAVSANMGPMYPYFYPRIGLFFIVPNCVQTGITIGCTLFILPETCNHAYNTMLCKLTEDTSSFLKRQTEMLSHSPASSHWASFSSLENEIANLKNLLSKMKSTELFLDMEFSYGRLKGEDLVSIQRIFKKTILRLSAFSYFQRLIDHNMQIYDDETIQKAGEATVSSWLNTPALSAASARTSSGRNSSESDRVSYFGLAPVNATTQDSERNGEEIRRLASKQLNVPVNNNFRTVGYASPSNASTASFNDIVQRGRSHVRTGSNNSEAPLAAKTSTTKRNGDLLEPQSPSLRSHKSRLHLPSSLGKFYKKRKKSYKPVGVLEAQQYLALESRLPFNKPQFLDSLLSILKNSSGDLFDQAIYSLDALNAWLVELNHDRIKKIFSKRDQKAAGRDRLKLIKLHYDHLSQALHEYEREKCFDVRKPYESLFQNQDVQQFYMHSLRSLFVVYYYESHLMQAVRGILQILETVIDLEERRPIRRLWWPLRSIRRSLLSQLTGHQGDYDENIHNDVDKDMNQSSTQPRDPDADHPSSLYHICGYRLTKFFKSIFRPMNVFVLKVGTLAVICTIPAFCRSSAGWYYRNRGLWAVILAIMSLQRFTADTVYGYLMRIFGTFFGAILGMVIWYTGSGHGLGNAYGLAAVWGAAIPFIQFIRVHFVILTPMPAVIFCVTAALTVTYSWKSNHEPGVVTLGIGWDVAYRRFLTVAAGITVAFIFSFLPQPRTAKYAVRKNIGNTLIDIGSIHCEISNFARRPVHNHIDPDIQSKVLNLSNTIQSLIGRLNMVNFEPSFKGRWPMEKYQLLCKTQLELVDLLNSLMTTITTLEDRWLFALLYRVGWLDHKFVADQLAVLYMSSNALQTGNPLPQVVPSPLVDRFFTTSGDVFLPPGLNDAPVPIPKAMEYELLNNMQYLNFAVGCTIAYAVVNHIDRIMFITKSLCGEIFEIDKWPFHFDDEYLYTCHPTNSPDQRKSPHDLV", "sequence_length": 1337, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ad86b0a937e1e4d0f0d1335a301ccc6d7b424a5788c20a070cd526d599e43860", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P87136.json", "taxon_id": "284812", "uniprot_accession": "P87136", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bre4-pf10334.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bre4-pf10334.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/arae-2-n-pf10337.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10337", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/arae-2-n-pf10337.yaml" } ], "pfam_ids": [ "PF10334", "PF10337", "PF11744" ], "protein_name": "Uncharacterized protein C26F1.08c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNFHHGWTFHKLRKNEHFLKYSAIFYSLLKPVVALFACQCLVLIRPLARKIGSFPFLILTFHTLFYPIQNTVGAQFEVIGQSLMGTAVGVTWGIITKLFATAANRNHGDGSPILATSLALASFISAYIRSRYGYRFFCIIWIFIDCFLLTRDPFEKTIAKSFYISLVYPSLIAAGVVSLVTILVPPMRMASDLVGQSGLDHLNKIMQSLNFSVENFFPSDESVSFSSSSSVIKRMFKEHESVLRNSMDDFHTAISSSEIELNYSNVSVSTLKLLEPKFERITLAMSAQLAASFTLYETYNFSIYKNQDKEVEGDIRVSELRFSLPESTEVQQKRNIFTPQYQLHINGSLRAKVRPKDSKDRIVNLSNLYFSNVDHMSSLILGSLKLAHAIMKWLVSDVEHIPDERLRECIESLQEIDSKEENLMTEIFCTAFKETKKVNDFGGFEEIEDEEEVLVIAYYLFNLFEVAREVKNLLLLLEGLKAQRHNKPKLFFRKFNLSLFDKQKYANYAISALLTHFTAGDADKCDDEAPDDASGEEDDSPKVLNDQSFFDSVRYPLKFFLRKMRRKCWRVYHFTARSKDVRYGLKMAIGIGLLSIVAFQKSTAARYTLWNGQWSLISTLFVLEVTVSTTLRVGLFRTLGTLSGAVYAYAAWEVSQGWSYAIATLTFAISWVSCYVKYNTEYSGIATVFNITFPPILYGSYLKTSTISPFHLACIRFIVVNVGIGMAIVVNIVVFPYLARRVLKYKLGQASLLSLKQYTTLSDYLLSRNLYTNLTICEGYKKQISSLLVTARKLLQLVNMEFNLKGPFPVGIYNDLIIKLENLGIRLVVLNRVRSRFGLYLYYDVVKNMIDYRKDLIVSMTLTFYILYNSIMSKAPIPYFVPSCRQALWNLRLAIEEEGKRRFVTNGGILAQGAGSDGVAKDVPENHSWLPAQKNFFLYYVECQVIGDIVTDLEYSISLVRRINGEKENETIGKKMA", "sequence_length": 977, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "baf8a8c42705318fa64a2e9cb47b72202e136d700d0d7bd3fcef8862389ec5d8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q10495.json", "taxon_id": "284812", "uniprot_accession": "Q10495", "uniprot_release": "2026_03" } ], "pfam_id": "PF10337", "short_name": "ArAE_2_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2423-ipr019434.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019434", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2423-ipr019434.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ybl028c-n-pf10338.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10338", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ybl028c-n-pf10338.yaml" } ], "pfam_ids": [ "PF10338" ], "protein_name": "UPF0642 protein YBL028C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKSLRASSHLNAKSVKRRGVFQKAVDAREQRISDKLKEDLLKQKLEDLKKKEEQGIDMDVDEKKSNEEAPRKKISTSGWRDGRHHTYKKAKLMKQSKKKTSFTRF", "sequence_length": 106, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "01ce8f73e7928577316f2145d0a60248c79f0f9883c1964f126fdd39a246fb0e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38202.json", "taxon_id": "559292", "uniprot_accession": "P38202", "uniprot_release": "2026_03" } ], "pfam_id": "PF10338", "short_name": "YBL028C_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/steryl-deacetylase-activity-go0034084.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034084", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/steryl-deacetylase-activity-go0034084.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/say1-mug180-pf10340.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10340", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/say1-mug180-pf10340.yaml" } ], "pfam_ids": [ "PF10340" ], "protein_name": "Steryl acetyl hydrolase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAANSGLDSKVEYYRLQENEIISAVSSEDADQNDAGFRLSTIHLHLFHGLKFAALLFTVVPVFIILDSMKIIFQRKRRFCLDHVNRSFLRQSSWILDERICQYVLNPLFVCLYPSTFSSPTYVKCNIPIEDQKSPENNIFQDHQLNAPKIVSTKFYQYVMPEGFDPTTDPVLVFYHGGGYALKLTPTSFSFLNNMRNAFPKMAILVPDYTVTATDDQSKKYPLQILQNVAIFDYVVKTMGCKNVVIMGDSAGGNAVLNIVLYLRKCHREIYPKKVIAISPWANATFFHEGEKEYMQGTQEWDGLCLKSHSMFGRMFVGNNPNVDFTSDPFVNIEKNFETKMWQDILKKCSVMITYGSDELLSFQNKILAKKMSDASEGCNHFTAKNVLVEHQGYHTGPILNYSRNMDRWTNIPSIARILEFMQS", "sequence_length": 424, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "596d62f2a5a991e31af940721bda18bc45cc19836841659beb188a8433bc46ec", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53324.json", "taxon_id": "559292", "uniprot_accession": "P53324", "uniprot_release": "2026_03" } ], "pfam_id": "PF10340", "short_name": "Say1_Mug180", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/queuosine-nucleosidase-activity-go0106432.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0106432", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/queuosine-nucleosidase-activity-go0106432.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/nucleoside-salvage-go0043174.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0043174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/nucleoside-salvage-go0043174.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/q-salvage-pf10343.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10343", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/q-salvage-pf10343.yaml" } ], "pfam_ids": [ "PF10343" ], "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGPPLSPRESARFVAENSRDVLVDHEGVRRAAELLLPAAAAWRVEQWKSLHELNPRGADEAALGWVFLVDSLNFSFWAEREDSKCAVRYGGTPYTGYWALCAAVNRALDQGIPITSASYYATVSLEQVRDIFRSDTAVPMPLMEERHRILNETGKILLEKFGGSFLNCVQKSGRSAQKLMQLIVENFPSYRDEAEFEGKRIAFYKRAQILVADTWSVLEGKGDGCFEDISSITMFADYRLPQILVYLGALKYSDELLKKLLKGEMLLNGDKQEVEIRGCSIWCVELIRDRLLELLEKGENSPVEINSVLLDYHLWDYAREHREDMKGVPFHRTRCIYY", "sequence_length": 338, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9bdab4d101b94ed6dcb3f3ed17b8176958844b43b4147e76487194918beebcbc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G3X8U3.json", "taxon_id": "10090", "uniprot_accession": "G3X8U3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/queuosine-nucleosidase-activity-go0106432.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0106432", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/queuosine-nucleosidase-activity-go0106432.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/nucleoside-salvage-go0043174.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0043174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/nucleoside-salvage-go0043174.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/purine-nucleobase-salvage-go0043096.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0043096", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/purine-nucleobase-salvage-go0043096.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/trna-queuosine-34-biosynthetic-process-from-salvaged-queuosine-or-its-precursors-go0160254.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/trna-queuosine-34-biosynthetic-process-from-salvaged-queuosine-or-its-precursors-go0160254.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/q-salvage-pf10343.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10343", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/q-salvage-pf10343.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5T6V5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10343" ], "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "765856f62538fae32e0f5e0e197e561b14957f77883026fca5f7c8784b7ccd50", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDGLLNPRESSKFIAENSRDVFIDSGGVRRVAELLLAKAAGPELRVEGWKALHELNPRAADEAAVNWVFVTDTLNFSFWSEQDEHKCVVRYRGKTYSGYWSLCAAVNRALDEGIPITSASYYATVTLDQVRNILRSDTDVSMPLVEERHRILNETGKILLEKFGGSFLNCVRESENSAQKLMHLVVESFPSYRDVTLFEGKRVSFYKRAQILVADTWSVLEGKGDGCFKDISSITMFADYRLPQVLAHLGALKYSDDLLKKLLKGEMLSYGDRQEVEIRGCSLWCVELIRDCLLELIEQKGEKPNGEINSILLDYYLWDYAHDHREDMKGIPFHRIRCIYY", "sequence_length": 341, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "765856f62538fae32e0f5e0e197e561b14957f77883026fca5f7c8784b7ccd50", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T6V5.json", "taxon_id": "9606", "uniprot_accession": "Q5T6V5", "uniprot_release": "2026_03" } ], "pfam_id": "PF10343", "short_name": "Q_salvage", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fmp27-bltp2-hobbit-gfwdk-motif-containing-rbg-unit-ipr019441.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019441", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fmp27-bltp2-hobbit-gfwdk-motif-containing-rbg-unit-ipr019441.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fmp27-sw-motif-containing-rbg-unit-ipr019415.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019415", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fmp27-sw-motif-containing-rbg-unit-ipr019415.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fmp27-wppw-motif-containing-rbg-unit-ipr019449.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019449", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fmp27-wppw-motif-containing-rbg-unit-ipr019449.yaml" } ], "pfam_ids": [ "PF10344" ], "protein_name": "Protein YPR117W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSMLPWSQIRDVSKLLLGFMLFIISIQKIASILMSWILMLRHSTIRKISFGYFFGTSIRRAFILTDFAQIYIGKITLRIGWKPGIVFHNVDLKLFGKDSHITAHSTKDSRTYFNPRDQTFTFVINRRVLSILKLVFSFSTFFHTLALTVPNGKQYKLNIGSITISHPHDDTIKLEAFLHDFTHPETKDTLNHTGFFMVCKIGKEDDTGSNCTKVILKNWKSSLKISDVCWHLPEKKGKNLHSEPVEPFSAGDDAEMLTSYRKMLKPFHYPLKTLNILDLKVENVKLIYKKKFTIRISSAQLYLESISILNNVSALELLPLNKPTWGDFELSLSANAVVVDIDGNTAVRIPFGNVILTSDILLFLLDNVPLRRTKVSSILNIINPSVFLTIHQVLEVLHLVDKFDSPETSSCTNTNDRSLNILDLDIDRLPSFNFELLMSNFISRLHISDEENVTFKVFSTHALFSRNNLSMTPKKGQVMQIRPDWPFAKTALVSDQLSNYIKIVGTSLSYLRIPTEQDANPVSIPVCGFERLDTFLDEFSNSKLIVQSTLRHSYVSLENIEVLHTLSRAFDKIYLLISSRTKRNAAHKANGGKLGDLNEAKKTFNWSLKLRMKDISCSLLVAGFLPKNLDPVEAENFNLSDVTRGAKVVFTESILLADSQEKNFTIIDASVYRFMDGTTYKPSPEVIIQFTNLLLSFNDSDEIHFSLPKIKFKMDVNIIWLWFYIRSIWIKFRPNSKLSRNSVSSVKSVNVLDRLRVDIGKMIIELTLPHNTEVLLIFERIGLSSSTKNLTIASLSAYVVSVYVKHIKVYVSLLNINDFELDTEELICKKSAVINTSLIHFHAEYHFRFYMITDNIVTLYKSFKQIKLAFSNLNEFKRLYPQQQFPKKVPNLHICCQDFLIDIEEDPFEQELGLILKVGVLEQRERLKKLEEFKEKLSTYEDMNVRLRSLYDTSRGQSFFPEFYANDQEYEQKAYLRLLENFSTSWIARYRKAKLSFYGMPYRVISREELGTKYHLFTRQKTSTVANLVVKDLDFKLGSPSFPLDNYMDFVYQYGKKVPKSTEYTLLIILGLKIKSALWELRLRDYPIPAISFPDTFTTGDVVFAEKMPAPCALHTVYVPFVSSAQRSPYNDANTIYGLHIIRTINSVKTYFNIRSMVTSSSSARITWGKSLQPGYESLMLWFDFLTKPLIDPSKKLGFWDKFRYLVHGKWIYEFSEESEIHLNIKGSHDPYKITDDGAGLAFCWSGGTTIYVHNSTDPKEFLKIESQRFQLAVPDFAKVSKFDKVFMKLDGRVIWTLGLLFEQGDISKAGDEERFLPNRPHYEIQLMNPDGVADLDHHDTYKGFRTSFIHMSFGVYSSEHGSINSLYLAPYALTHFFKWWNLFHTYTSGPIRQGRLFTDVLQNKTKFGRSLFTIAYQLHLKRLMVTHIYRHITTQYDLEKDRKITFTGLKGRFDSLKIDLHQKRVKLTHTNQKLNKSKPVWKFKMSRGEIDCAEADIRILSTLFDQEAVKEILTSGLDGILEDEPSRPITPQDVEYLRESDWYDYEDYIDLNQVPLGSSLPLKLEAIPLLYSPRISYFRKINDDGYVLAYPFGTEESHNCLIGKNHPELTQEKLATERKREIEEQLKLLHITLSELQSNKGGGSVSGNSERYARELKAEVAELNHRLHTVNTILSDLKISETIPGGNTDGDSSSSLSDTDVNLENAPPIQNRISLLRTNTVESFVSMRKASTMQVESTYDNRFMVHNIELKIDNKIRHHLLEYASSAFERKSMRFAVTYKSVTILKELLGNVLTGVRTSVEDYGSILEDDLASNSEFIEHFEKLIREVPSDDFDYVDNYLFRLISPQVQIKSDVERNAAVILAARDIEMGIIDIVQVYGKSGKRIPVDVDTIVETRYSAVSKDIQLFTLFKKDLEGPEGRFFHKNGYGSDKESDIWPPWIPLEMCFDGSLLDKHVFLKRRSMFLTYVAPNPLFFSANDTSAFSYDSRFRIAFPGLVLTSDCQQYCAVYAIAEDLLSFGSSLDEKVEKLSRILFTDEVRNNLENLDVSVVTALQERIKELYYTRAYLKLHEPRLFMKSGQELTFDIQTSTLKLTLLMTAIKKTYDRMGSGNRVIQKRLRWQVGTDELIWELYDESKTPFVTIGLGPSTFIRSETSDGTNSNKVSISSLQCFNQQENPVYTELLAPFYENSSYNKNAPMVEIFWILGPSVGGISDLQDLIVSLQPLIFKMDHKTSEKLMNYLFPKIEQTSIEPNSPELVPRSSTSSFFSSSPVLRHSLSNGSLSVYDAKDVDSWDLRSIQSKEGIKKHKGDHRKLSASLFVQPDYNINEMVKRSGTFFNVKSIIIRKTLMSVCYKGSHSLLTDVNNLIVRVPVLKYHNKLWSREEFFTALKRDVVRIVLQHLGNIIGNKFLPHKKENKKKTSMEIHRLLSPDSQNRDNSHILEVEGHNSFYSSTHSSDIRSINSDETYNENDGNGVKPFYPVTSEFSKNK", "sequence_length": 2489, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "29303cbb17f2fe1331bc1c86e3fa9462360946318bb06052d600e267419ea316", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06116.json", "taxon_id": "559292", "uniprot_accession": "Q06116", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fmp27-bltp2-hobbit-gfwdk-motif-containing-rbg-unit-ipr019441.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019441", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fmp27-bltp2-hobbit-gfwdk-motif-containing-rbg-unit-ipr019441.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fmp27-sw-motif-containing-rbg-unit-ipr019415.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019415", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fmp27-sw-motif-containing-rbg-unit-ipr019415.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fmp27-wppw-motif-containing-rbg-unit-ipr019449.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019449", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fmp27-wppw-motif-containing-rbg-unit-ipr019449.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/hobbit-pf10344.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10344", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/hobbit-pf10344.yaml" } ], "pfam_ids": [ "PF10344" ], "protein_name": "Protein FMP27, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMFPINVLLYKWLIFAVTFLWSCKILLRKLLGINITWINLFKLEICGLSLEDGTVRLKSVRFAVFERKLFIKGLRIDSKKSSTNDLHKELPREEERTFIETPEDNGGGFISKILSLSQYWLNGVTIILEDTQLVNNDITIEKFGFFLSIDNSKHIKSLRFDSFLRKLLWNGQTIIADAIFIVNTNLLIGEIMNPLKDGLQVGLDLKLGDLNIPMNLLNLFINKENVDLMSNEKLLQRLADTTKANEELKDEDIAKMKDDLVYAMEKFVDRIKPLKEMNVTVDKLQIKDFPLTNHPELLGMNKYISYNVLVSNINFNTNRFRNEMPGYTLIFEERDSPFKFSIIMARFNIYLNLNRKHQSHAKQLKIIEIPNVSIFGETNLFSQKFRLSNNLHAKELENAIFNIKGNISSLTIDMDPVNISFIKCFLSNIKVFTSSCPKNKILKENSHVKFLTRRRVLFDYFKCFLPLINMKFTLDDPKFVINDKDDLIIGKFSVFMISHHSKRYTLGNNLMEEKEETQHIFYESHWNVELLDMKLQHIIKHQKYEHTILRVDSIAIEEKVQLLPDILCSANADIDTLMLDLSELPTMVMLSELVHNLDSQLANVEENYFKEFYEKFASNLQNMKAECSNMAKCLRQKEILPSDFMFQQLPDFFDYIKINIRDISSTLGARSVFMPRDVFSSVDSQSSKDLIDGKLRKYCNTVEKLQIALFGDKTQWHNKIGSNHATMVRSGQLTNFSKDNKQNPNHKSSIADLDDISTSDATEVNHLWNINLLVNDITTSIIGETPEVSEELSTKTVSKVSNLSIKLFPDTESFSSNESDSKIILQINHSRGTSVVSLMSIFLAVSGIHTLNQIFGHCIHQKMRQSKTKQYFLALSESKKKSCIKSIKWGQLKELLEINFSSEYISQIIALPNGLRTKFEPTSTFITVKNCNTISVSGQYFRMMVESPTQPNFWERMICINGFKVMIHIDLLKQQMKKLNSLQNWEKLPSAITLENDSWHFSIPHHFEMFKIIDSIPTIFKSIKQMLYSLKTSKDDLIIFPHKIETPLSLPKIKLKSKRWLFSISDDPLEAELNTIFQIGLQEQRERLAKLQEFNKRISEDLIKSQKNAKEMKDDFEAIDNAILKHRTGLWAKDGKKRLRKSATDSEIPLTPAALNINGKRDDRPDRTQFISPEIENAYNTLLANFSDSWIKRVKEYKVKERREFDKNFSFLWGFIDYTKLPKDINKKVLPFSTNPFLMNLIIENIDIDIIRPSCGIENIPNFIHDVGKGVPKNTEYSIMIPMHLDAKFSEVRWHLRDYPLPFVSIPPLSSTQSKETIPMRIYGDFMITEDMLQSDRELRTLFVPLIPSVTVENTDRYYSLFVPRTMTSAKIFTDLNFEINSNHTTRVTWGGSYQPAIQQTMQCLDNFSKPPLDPSVKLGFWDKTRYLFHGKINIVWKKRGKFEISLKGAKSPYMLGGESAGFIVGFDGNVNLKCNEDNDPKKFLSCSADKVHFSIPNYFAKPLLVWSRPSTNTMFIPNQDDTNMQRYASFYYLLNTTSSKNEKADKEIMGKSFIEKTGIKLSGGMTLDMGILFERLGPSLNERTFESKKHYLTRLCNPIYVQDLSKHDSYAGFRSDFIHMSFGLSSNSNSAYNAMQLSPNGFKAFFVWWKSFSGNFPVRRGPLFGLQSISPKFGEHLYTISYHADVSPLFINYMYHNADADQILRKNYLEVAEFAGLKAKSSHFIMDLHQRKEVLTEYQAGLNVRRRVMKLKFLAGDVVCQDVDIRTVSGEFSKLNYIEEKEDAEYDIFDNDMSWLDITDFQDAFFINPDNYLPKIKIMPFAFSPQFAYQKRASYGDKYQVDPKTCKPITPFDNRVSHGCTLGHNVSLRTDLVEKRVTVLKKFREKLQEGIRKNKSAGVSEENLNDLLSKANSSVENAELLLKDFQKIFKQHEAGQTEQPFHFDSLNLLKNTKKTLKQFEHRFFIFNVLLKWNEDARSAIFKFFYYANLSNEFASLASGKGLREFEDVIKQREMTDDTTSMEAIPEGTDKANTTKQCHSCDDTEFTTENLLNIFEKNITQLSCDIKNKIHHKFFVQFITPQIQLTSLENPEACVLVSSPFFMLKTLEFDANTTSNTYMQDIFLKRHGILFGNANAFLFNKKDYQEFFELYFGSSSYGQDKKEQWPPWLGLELGFEPSALKKKAVVRNISALLHHQKLAPFSAKYDSLKDKIEDNICGYVPQVNVQVNSDEYLMLTKMALKLFLYVEPEDEELKKYIEKLIIGYDIYDTAQTRKFVNDLHDSEQILAVVEKELLFKRSLLDDIGKLDLSNIHNERMHQLLRLYILRKVFTSNGNNYINRTLVWNIKVNETILHLLDKIDKPFLDIAVAKLNFQRIQHTMGLRKNTVTVKMMQIFDLGENVNYHCILGPLITSSGNDTVGLASDVPLVQITWDVDKPVGGIKVVKNVETTLSSLTIKLEEDRLNKLFEWLSLKELIYDGNGDDDDGASSIFDMVSSESEEGKIEFSEDISSDFNEMLKRSSDYMIVEDLKLNSFKLCISYKGKGKMRLANVTNFVFNFPTLRLSNQTLRVTDLLLALKKVLIKVLIKHTGRFIGNKLKRNSKENKIADDTSPLKQLTTYNSYTEPEELR", "sequence_length": 2628, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "be54830c852f98c8a6e39b60616c77bb15ac64c779c1707ee7d67db1fdcb6628", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06179.json", "taxon_id": "559292", "uniprot_accession": "Q06179", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fmp27-bltp2-hobbit-gfwdk-motif-containing-rbg-unit-ipr019441.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019441", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fmp27-bltp2-hobbit-gfwdk-motif-containing-rbg-unit-ipr019441.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/hobbit-pf10344.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10344", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/hobbit-pf10344.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q14667", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10344" ], "protein_name": "Bridge-like lipid transfer protein family member 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ec497bcad3f5e8a3f68975ea3ae0b6024b84adac1158ec2e16f0658f0854a006", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPLFFSALLVLLLVALSALFLGRWLVVRLATKWCQRKLQAELKIGSFRFFWIQNVSLKFQQHQQTVEIDNLWISSKLLSHDLPHYVALCFGEVRIRTDLQKVSDLSAPFSQSAGVDQKELSFSPSLLKIFCQLFSIHVDAINIMVLKVDTSESLWHIQISRSRFLLDSDGKRLICEVSLCKINSKVLKSGQLEDTCLVELSLALDLCLKVGISSRHLTAITVDVWTLHAELHEGLFQSQLLCQGPSLASKPVPCSEVTENLVEPTLPGLFLLQQLPDQVKVKMENTSVVLSMNSQKRHLTWTLKLLQFLYHRDEDQLPLRSFTANSDMAQMSTELLLEDGLLLSQSRQRIVCLNSLKASVQVTTIDLSASLVLNTCIIHYRHQEFSHWLHLLALETQGSSSPVLKQRKKRTFPQILAPIIFSTSISNVNISIQLGDTPPFALGFNSISLDYQHLRPQSIHQRGVLTVDHLCWRVGSDSHIQRAPHPPNMHVWGEALVLDSFTLQGSYNQPLGLSSTQSDTLFLDCTIRGLQVEASDTCAQCLSRILSLMGPQSGKSAVSRHSSFGESVSLLWKVDLKVEDMNLFTLSALVGASEVRLDTLTILGSAETSTVGIQGLVLALVKSVTEKMQPCCKAPDIPTPVLSLSMLSITYHSSIRSLEVQCGAGLTLLWSPPDHMYLYQHVLATLQCRDLLRATVFPETVPSLALETSGTTSELEGRAPEPLPPKRLLNLTLEVSTAKLTAFVAEDKFITLAAESVSLSRHGGSLQAYCPELAAGFDGNSIFNFKEVEVQLLPELEEMILHRNPFPALQTLRNRVWLLSFGSVSVEFPYQYDFSRTLDEAVGVQKWLKGLHQGTRAWASPSPVPLPPDLLLKVEHFSWVFLDDVFEVKLHDNYELMKDESKESAKRLQLLDAKVAALRKQHGELLPARKIEELYASLERKNIEIYIQRSRRLYGNTPMRRALLTWSLAGLELVALADASFHGPEHVVEQVQELDPGSPFPPEGLDLVIQWCRMLKCNVKSFLVRIRDYPRYLFEIRDWRLMGRLVGTEQSGQPCSRRRQILHLGLPWGNVAVERNMPPLKFYHDFHSEIFQYTVVWGPCWDPAWTLIGQCVDLLTKPSADPSPPLPWWDKSRLLFHGDWHMDIEQANLHQLATEDPYNTTENMHWEWSHLSFHWKPGQFVFKGDLDINVRTASKYDDCCFLHLPDLCMTLDLQWLCHGNPHDHHSVTLRAPEFLPEVPLGQLHDSYRAFRSENLNLSIKMDLTRHSGTISQPRILLYSSTLRWMQNFWATWTSVTRPICRGKLFNNLKPSKKKLGQHYKQLSYTALFPQLQVHYWASFAQQRGIQIECSQGHVFTRGTQRLIPQAGTVMRRLISDWSVTQMVSDLSQVTVHLMASPTEENADHCLDPLVTKTHLLSLSSLTYQRHSNRTAEEELSARDGDPTFHTHQLHLVDLRISWTTTNRDIAFGLYDGYKKAAVLKRNLSTEALKGLKIDPQMPAKKPKRGVPTSASAPPRVNTPSFSGQPDKGSSGGAYMLQKLIEETDRFVVFTEEESGMSDQLCGIAACQTDDIYNRNCLIELVNCQMVLRGAETEGCVIVSAAKAQLLQCQHHPAWYGDTLKQKTSWTCLLDGMQYFATTESSPTEQDGRQLWLEVKNIEEHRQRSLDSVQELMESGQAVGGMVTTTTDWNQPAEAQQAQQVQRIISRCNCRMYYISYSHDIDPELATQIKPPEVLENQEKEDLLKKQEGAVDTFTLIHHELEISTNPAQYAMILDIVNNLLLHVEPKRKEHSEKKQRVRFQLEISSNPEEQRSSILHLQEAVRQHVAQIRQLEKQMYSIMKSLQDDSKNENLLDLNQKLQLQLNQEKANLQLESEELNILIRCFKDFQLQRANKMELRKQQEDVSVVRRTEFYFAQARWRLTEEDGQLGIAELELQRFLYSKVNKSDDTAEHLLELGWFTMNNLLPNAVYKVVLRPQSSCQSGRQLALRLFSKVRPPVGGISVKEHFEVNVVPLTIQLTHQFFHRMMGFFFPGRSVEDDEVGDEEDKSKLVTTGIPVVKPRQLIATDDAVPLGPGKGVAQGLTRSSGVRRSFRKSPEHPVDDIDKMKERAAMNNSFIYIKIPQVPLCVSYKGEKNSVDWGDLNLVLPCLEYHNNTWTWLDFAMAVKRDSRKALVAQVIKEKLRLKSATGSEVRGKLETKSDLNMQQQEEEEKARLLIGLSVGDKNPGKKSIFGRRK", "sequence_length": 2235, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ec497bcad3f5e8a3f68975ea3ae0b6024b84adac1158ec2e16f0658f0854a006", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q14667.json", "taxon_id": "9606", "uniprot_accession": "Q14667", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fmp27-bltp2-hobbit-gfwdk-motif-containing-rbg-unit-ipr019441.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019441", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fmp27-bltp2-hobbit-gfwdk-motif-containing-rbg-unit-ipr019441.yaml" } ], "pfam_ids": [ "PF10344" ], "protein_name": "Bridge-like lipid transfer protein family member 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLFLSALLVLLLVALSALFLGRWLVVRLATRWCQRKLQAELKIGSFRFFWIQNVSLKFQQHQQTVEIDNLWISSKLLSHDLPNYVALCFGEVRIRTDLQKVSSLSAPFSQNTEVEQKELSLSPSLLKIFCQLFSIHVDAINIMVLKVATSESLWHIQISRSRFLLDSDGKSLICKVNLSKINSKVLKSGQLEDTCLVELSLALDLRLQVSVSSWHLTAVTVDVWTLHAELHEGLFHSQLLCHAPGRISKSVSCSDLTENFAEPTLPGLYLLQRLPDQVKVKMENTSVVLSMNSQKRHLTWTLKLLHFLYHRDEDQLPLRSFTANYDMAQMSTELLLEDGLLLSQSRQRIVCLNSLKANVQVTTIDLSASLVLNTCIIHYRHQEFSHWLLMLALETQGASSPDLKQRKKRTFPQILAPIIFSTSVSNVSISIQLGDTPPFALGFNSISLDYQHLRPQSIHQRAVLTVDHLCWRVGSDSHIQRAPHPPNMHVWGEALVLDSFTLQGSYNQPLGLSSTQSNTLFLDCTIRGLQVEISDICAQCLSRVLSLVIPQSERSAVSRKSSLGESVTLLWKVDLKVEDMNLFTLSALVGASELRLDTLTVLGSAETSTVGIQGLVLALVKSVTEKMQPCCKAPDIPTPVLGLSMLSLTYHSSIRSLEVQCGAGLTLLWSPPDHMYLYQHVRATLQCRDLLRATVFPEIIESHSLNTPQSTWEPEDHLPESSLPRRLLTLTLEVSTAKLTAFVAEDKFITLAAESVSLNRHGGSLQAYCPELAAGFDGNSIFNLKEVEVQLLPELEEMILHRNPFPALQTLRNRVWLLSLGSVSVEFPYQYDFSRTLDEAVGVQKWLKGLHRGTHAWASPSPAPLPPDLLLKVQHFSWVFLDDIFEVKLHDNYELMKDESKESAKRLQLLDAKVAALRKQHGELLPARKIEELYASLERKNIEIYIQRSRRLYGNTPMRRALLTWSLAGLELVALADASFHGPEHVIEQVRELDPGSPFPAEGMDLVTQWCRMLKCNVKTFLVRIRDYPRYLFEIRDWRLMGRLAGTEQSGQPCSRRRQILHLGLPWGNVAVERNMPPLKFYHDFHSEIFQYTVVWGPCWDPAWTLIGQCVDLLTKPSADPSPPLPWWDKSRLLFHGDWHMDIEQANLHQLATEDPYNTTENMHWEWSHLSFHWKPGQFVFRGDLDVNVRTASKYDDCCFLHLPDLCMTLDLQWLCHGNPHDHHSVTLRAPEFLPEVPLGQLHDSYRAFRSENLNLSIKMDLTRHSGTISQPRILVYSSTLRWMQNFWATWTSITRPICRGKLFNNLKPSKKKLGQHYKQLSYTALFPQLQVHYWASFAQQRGIQIECSQGHVFTRGTQRLIPQAGTVMRRLISEWSVTQMVSDLSQVTVHLMASPTEENADHCLDPLITKTHLLSLSSLTYQRHSNRTTEEELSARDGDPAFHTHQLYLVDLRISWTTTNRDIAFGLYDGYKKAAVLKRNLSTEALKGLKIDPQMSAKKPKRGIPPSAQVPPHVSTPSFSGRPDKGSSGGAYMLQKLIEETDRFVVFTEEESGMSDQLCGIAACQTDDIYNRNCLIELVNCQMVLRGAETEGCVIVSAAKAQLLQCQHHPAWYGDTLKQKTSWTCLLDGMQYFATTESSPTEQDGRQLWLEVKNIEEHRERSLDSVQELMESGQAVGGMVTTTTDWNQPAEAQQAQQVQRIISRCNCRMYYISYSHDIDPELATQIKPPEVHENQEKEDLLKKQEGAVDTFTLIHHELEISTNPAQYAMILDIVNNLLLHVEPKRKEHSEKKQRVRFQLEISSNPEEQRSSILHLQEAVRQHVAQIRHLEKQMYSIMKSLQDDSKNENLLDLNQKLQLQLNQEKANLQLESEELNILIRCFKDFQLQRANKMELRKQQEDVSVVRRTEFYFAQARWRLTEEDGQLGIAELELQRFLYSKVNKSDDTAEHLLELGWFTMNNLLPNAIYKVVLRPQSSCQSGRQLALRLFSKVRPPVGGISVKEHFEVNVVPLTIQLSHRFFHRMMGFFFPGRNVEDDEVGDEEDKSKLVTTGIPVVKPRQLIATDDAVPLGSGKGVAQGLTRSSGVRRSFRKLPEHPVDDIDKMKERAAMNNSFIYIKIPQVPLCVSYKGEKNSVDWGDLNLVLPCLEYHNNTWTWLDFAMAVKRDSRKALVAQVIKEKLRLKPATGSEVRGKLETKCDLNMQQQEEEKARLLIGLSVGDKNPGKKSIFGRRK", "sequence_length": 2234, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "57110c641277827bc2ee4b2b34630dc96229a8d3ef4439d982b8b33ed427d01d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5SYL3.json", "taxon_id": "10090", "uniprot_accession": "Q5SYL3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fmp27-bltp2-hobbit-gfwdk-motif-containing-rbg-unit-ipr019441.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019441", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fmp27-bltp2-hobbit-gfwdk-motif-containing-rbg-unit-ipr019441.yaml" } ], "pfam_ids": [ "PF10344" ], "protein_name": "Protein KINKY POLLEN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAFLVMFIFTIALFVALLWVFFKSLPWILRHSAGITLSFQFDGWNCLKDVALQFKKGSIESIVIGEFKANLSQSLVELCATAFIQDPKVIFSICDLKIVTRPSHSSKGPRKPKTRKSSSGGKGKLMLFANIGRFFSVSMTNMVVQTPKATAEIKELELDLSKDRGSGNFFMKLYLLPIFVQIGEPHVTSTHSPEMDSDICLARQTPSKTAEGSSSSSFHCEKISLSCEFGPNRKSSPSIKNVEVDLANAVLNLNEKLLLKNKSSTSAASKGEVIDSSSGNTTSEKPPKQPMNVLVAKHASKFPEKVLFDLTKLEIRFVHQEHDFSIANSIKGFQLRSAKSQSGEDGKEDTCLDFAMELQEMHLFRESEVSVLEMTKFGVFTKVYCPIQESLPVRAEVEIKLGGIMSNIIMTRFEPLLRLHFSRKKKMVLKEERPTIAKSETTGFKAVVWKCATSAPDVTVVLYNPGGSPIYQCGLDSFQATANNMSNRGTVVQMELNELTLCMVDEHKGCLKESLFGLESDPGSLINIRKVRSEWGKKEVLPEGDGSKGKQTLVVDVSEIGLLFSFRSVEALTVNAISSQAYIKSLTGSSSKNKQEKGAHRSKPPSGRGTQLLKLNVERFSLNFAGDSSLENTVIDDPKRVNYGSQGGRIIISVSADGSPRTASVFSTLSEEHEKLKYIISFEILKFGFTLNKEIQSTQVELETAKAIYQEFLEEPHQVSRVTLCDIQNAKFVRRIGGGKEVSICSLFSASNIAVRWEPDVHISMVELGLRLKSLVLTQKLKQHGNRNPEEASTVTGDKQKEEPTTTPNSLDKKKKKESIFAVDVEMLSITAEAGDGVEAEVQIQSIFSENVGIGVLLEGFMLGFCGCRIVKSSRVQISRIPSMPSTSSSVTPATGGTPWDWIVQGVDIHICMPFRLQLRAIDDAVEEMLRALKLVTNAKTKLIFPIKKESSTPKKPGSKKVGRIRFGIRKLIFDIEEEPLQGWLDEHYHLMRKEAYELAIRSKFLDELMSSGNQVPKTGGDESDGEKKISFEGEEIDPQDPAIIQMMNEKLYKQSFSSYYKSCQSLRLSDGSGACKEGFQAGFKMSTSRTSLLSVSVTDLDLSLTAIGGGEAGMIEIVKKLDPVAEEKDIPFSRLYGSNLRLNTGTLAVQIRNYTFPLLSTAFGKCEGCLVLAQQATAFQPQIIHDVYIGRWRKVQMLRSASGTTPAMKTYLDLPIKFQKGEISFGIGYEPVLADISYAFTVALRRANLSLKGPGLLQPPKKEKSLPWWDEMRNYVHGNVTLSFSETKWIVLGSPDPYEKLDKLHMTSGSVEIQQYDGRVHFSAEDIKIFFSSFEGLARHYPNSPVCPSSYPFLEVPRFSLEVRMDWECESGSPLNHYLFALPIEGKARDKIYDPFRSTSLSLRWDFTLRPENPSVSAVDQTKKVGSECKPEKSSFSPPTINIGAHDLAWLIRFWNMNYLPPYKLRTFSRWPRFGVPRIPRSGNLSLDRVMTEYNLRLDVTPICIKHMTLDSNNPAKGLTFDMTKLKYEICFSRGNQDFTFECKRETLDPVYQGIDLHLPKAFLRRDQHCSKPAQMSRTSSLSGSTDRVTSDNGTSTSDGTEKHPDDGFLFSSDYFTIRRQAPKADPERLMVWKEEGKIYREKVDARSTKEKQSEPEENSHSDPSDDDGYNVVIADNCQRIFVYGLKLLWNIENRDAVLSFAGGMSKAFQPPKPSPSRQYAQRKLLEGNQKHSESEVSQDEPTKQPSTGSGNLASQSKEPAEVLSPSSEPIKTENFASFPLGATKTGDSNDPEEEGTRHFMVNVVEPQFNLHSEDINGRFLLAAASGRVLARSFHSVVHVAYDMIEKAAQNENDHNPENGTDMTWTRMEVSMMLEHVQAHVAPTDVDPGAGVQWLPKIRRSSPKAKRTGALLERVFMPCDMYFQYTRHKGVTPDLKVKPLKELTFNSRNITASMTSRQFQVMTDVLSNLLFARLPKAHNDSLKLSGEEDDEVEEEIDEVVPDGIEEVELAKIELEAKERDRMMLLDDIRKLTQNESNSGNINLEKESDFWMISGGRPVLVERLRKAYLSVQQSRKTAYTALRTSVKNAAELRLLEKDKNKRPSSAMRISLQINKVIWSMVLDGKTFAEVEIDNMIYDFNRDYRDIGIAQFTTRYVVLRNCLPNAKCDTVLSAWNPPPEWGKKVMLQVDARQGAPKDGQAPYELFQVEIYPLKIHLTETMYTMMWEYIFPGEEQHSQRREEVWKVSTTSGSRRRKGSFAQEAAALLAASDLGQGSKNQSLKSSTIRGSGRELRRTSSFDRSWEETVAESVATELVLSSMEHQGESSKGKLKDSKTSKAGGRSVHEEKKGEKSLEDKKSRPQKIMQFQTIKISQVELLITYEGSRFVVNDMKLCMDTFHRVEFSGTWRRLFSRVKKHIIWGVLKSVTGMQMKKFKDKAHVPKDDIGLRDKDESGRTDQESGAWVKRPGDNAGDGFVTSIRGIFNTQRRKAKKFVLRTMRGEAEDNFPGEWSDNESDFSPFARQLTITKAKKLIRRHSKKFQNQNTTKGSKKTQLSPTLSPPKEEDQYESDSSSGSSAYEEFLDQNQI", "sequence_length": 2587, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e29cda0c042782dcc383c10ea644d65ac5464284e5b650639f30b94d15ceb6a0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6IMT0.json", "taxon_id": "3702", "uniprot_accession": "Q6IMT0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fmp27-bltp2-hobbit-gfwdk-motif-containing-rbg-unit-ipr019441.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019441", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fmp27-bltp2-hobbit-gfwdk-motif-containing-rbg-unit-ipr019441.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/hobbit-pf10344.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10344", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/hobbit-pf10344.yaml" } ], "pfam_ids": [ "PF10344" ], "protein_name": "Protein SABRE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAASPAKFFFGFLIVSIVLWMIFMLFAWMLSRVLGASVVFRVGGWKCLKDVVVKFKKGAIESVSASEIKLSLRQSLVKLGVGFLSRDPKVQVLISDLEVVMRSSTSTTNLQKAKSHKPRTSGRGKWMVVANVARFLSVSVADMVVKTTKVIVEVKELKLDINKDGGTKPNLYVKLNVLPILVHLCESRIISDQSSNVSFECCPASQASSASPDRSAATLFCDELSLSSEFGHDRAVGIVVRNVEVTSGDVILNFDEDSFPKSKQSSASLRSDEVRTSATAASSAKKPHKEHQLVAALAKYSSSFPEKVSFSLPKLDVRCVNREHDLLAENNITGIQLRSVKSKSFEDTGESTRLDVQMELSEIHVFREADSSILEIMKVDVVSFIYIPVQPVLPIRAEVDIKLGGTRCNLFISRLQPWLRLHFLKKKKLVLQEKTHNLEKTKAADMKAIMWTGTVSAPEMTVMLYGTEDIPLYHFCSQSSHVFANNVSSLGTAVHVELGELNLHLADEYQECFREHLFGIEPNSGSLMHIAKVSLDWGRRDRTSSDEVGFRSKLVLSVDVTGMGIYFSFKRVQSLIINALSFKALFKTLSVTGKKMNKTVSVQPSKGSGKGTRLVNINLERCCVNFCDDTGLDNTVIDDPKSVNYGSQGGRVSFSSLADGTPRTASILSTAPEACKRLKYSVSLEISQFSFCLNKDKLSTQMELGRAKSIYQEYLEEHTPCSNVILFDMHNAKLVRRSGGLNEIDVCSLFSATHISLGWEPDVHLSFYELFLRLRSLVYAQRHKEPESGCNKGISSVKDGGPSEKINQSNSVNKQKKKESMFAIDVETLTISAEVGDGVEVKLEAQSIFSENACIGVLLEGLMLAFNGSRVFKTTRMQVSRIPTATNLSDAVPVMTDGPWDWVVQGLDVHICMPYKLQLRAIDDSIEEMLRGLKLISVAKGKHILSGKRESSKPKKSSPKFGRIKFCIRRLTADIEEEPIQGWLDEHYQLVKKEACELAVRLKFLEDLIHKAGQSPKGAETSAVLDERKMFFDGVEIDVEDPVAINKVKEEIHKRSFQSYYQACQGLAPSEGSGACREGFQAGFKPSAARTSLLSVCATDFDLSLTAVHGGDAGLIEVLKKLDPICEENDIPFSRLYGSNVYLNTGSLVVQLRNYTLPLLSGTSGKCEGRIVLAQQATCFQPQISQDVFVGRWRKVKMFRSASGTTPPLKTYSDLRIHFEQGEVSFGVGYEPAFADISYAFTVALRRANLSHRNPDMVQVIKKERSLPWWDDMRNYVHGNITLSFSESKWSVLATTDPYESLDQLQIVSGPIELKQSDGRVFVSAKDFKIKLSSLESLISRHSLKVPVRASGAAFIEAPDFNLEVTMDWDCESGNSLNHYLYAFPAEGKPREKVFDPFRSTSLSLRWNFSLRPEKFHQSPSSTEHPTDVGTVYSSQDKPDSIPLASPTMNLGAHDLAWILKFWGLNYYPPHKLRSFSRWPRFGVPRAARSGNLSLDKVMTEFMLRVDATPSLIKYMPWDSDDPAKGLTFNMAKLKYELCYSRGKQKYTFECKRDALDLVYQGLDLHVPKAFINKDEHPCIPGSVQVLRKSTQDALIDRVPSGKDHKRYEKHRDEGFLLSSDYFTIRRQAPKADPERLLAWQEAGRRNLEMTYVRSEFENGSESDEHIRSDPSDDDGYNVVIADNCQRVFVYGLKLLWTIENRDAVWSFVGGISKAFEPPKPSPSRQYTQRKIHEENQKESCPETHQGEMSRSSASPGRNLPSSPSHSIKIEKSDDIGTVETIESEEEGTRHFMVNVIEPQFNLHSEEANGRFLLAAVSGRVLARSFHSIMRVGVEVIEQALGTGSVKIPECSPEMTWTRMEVSVMLEHVQAHVAPTDVDPGAGLQWLPKIRRNSPKVKRTGALLERVFMPCDMYFRYTRHKGGTPDLKVKPLKELTFNSHNIIATMTSRQFQVMLDVLTNLLFARLPKPRKSSLQCPTEDEDVEEEADEVVPYGVEEVELAKINLEEKERERKLLLDDIRKLSPCSDNMDDTHIEREGELWMISTRRSILVQGLKKELTYAQKSRKAASASLRMALQKAAQLRIMEKEKNKSPSYAMCISLQINKVVWSMLVDGKSFAEAEINDMIYDFDRDYKDIGVARFTTKYFVVRNCLPNAKSDMLLSAWNPPPEWGKKVMLRVDAKQGAPKDAHYPLELFHVEIYPLRIHLTETMYRMMWEYFFPEEEQDSQSRQEVWKISTTAGSKRVKKGLVGHESSGHAIKDVEASRMSSSALSASAAVQSQSNDDSVQKSNVICLRSSTGASAQELRRTSSFDREENVAEPIANELVLQAHSCNVSSSIEQQEDFSKQKVKEIKPVKSGRSSHEEKKAGKSHEEKKSRPRKMMEFHNIKISQVELLVTYEGSRFVVNDLKLLMDTFHRVEFTGTWRRLFSRVKKHIIWGVLKSVTGMQGKKFKDKSHNNRESTDNDLNLSDNDQTGKPDQQQVTWFKRQSDGAGDGFVTSIRGLFNTQRRKAKAFVLRTMRGEAENDFHGDWSDSDVEFSPFARQLTITKAKRLIRRHTKKFRPRSQRGSTSQQRESLPSSPIETTPFESGYSSGSSPYEDFRE", "sequence_length": 2603, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a1bba2d881469fac83fbc03694e0c9a029933592ae6db9361278014bde3dde3d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6IMT1.json", "taxon_id": "3702", "uniprot_accession": "Q6IMT1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fmp27-bltp2-hobbit-gfwdk-motif-containing-rbg-unit-ipr019441.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019441", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fmp27-bltp2-hobbit-gfwdk-motif-containing-rbg-unit-ipr019441.yaml" } ], "pfam_ids": [ "PF10344" ], "protein_name": "Protein hobbit", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMLQLLLFCLALFIFVYWVLPTGISWYLVKRFRVKVRIGRISLPYLSLKNVHISKSGFSVQIEEVCLRSSFFTTEVTKLLSIYIRDIRINKDIHSRQDDSYDQDSYELRRTQTLAGKASEAKGVPDFRQTKVPASIITFAQFMAVHVNNISVVLMNNDFDPGWFIHATAKELHLDGSIVQNARVLLVNAALSEAQAKMLRHCSSRRQSLENLNKIRPCLGEVSFDMTLDASLFAQGPLSMDTLSLVINNAKSVIHGGLYEFLSEAKRRTSTGQPSRRSTQGLAPSKRSYDNDNYEKLAPIIPKNFNFSIKAATFSAVKENSQNDFSAKLQSFQISGKFNSKVTDEKTLLPSMLAKLGFHHLDIDTKYEKLLFVEQFTIDSVLEKDIFNLYVKLKTFQIIYNHSEIYDFVNNNFLARQRSSEAQPMQLIHKQKSLPDHLDLDTAVQSNLRANQRREGGVLEWIMQRIVVKGCAELFNVSLLMKLEDEHIAMSVSHTRFLLEQIEEKRSNLYENKFLNLLLNQRQWSMELMVETLWSNLGNSINDTNNLKKTHSPGSPFFLGVSLVKLCSYANTTKLDISVHTFRTEYSMQLAEFVVKSMECLRQYRGIKPKNMSGQSHARPNAGLTLSVQPSQSSTSLRVSVKVKDITAYFVNHHNVYSLLSFSELNLSRSQSLTTLKLEEFQMAIMRSMTASSLCLTDFSDVFATCKMIRLEHEQVEGTMGKLSIYIPGNMEATWNSNLHMHLLTLVRDMQDLKTELAIPASSVKKTTPKEGFIVELSAERSTIFEIKFSDRHSIQIFVESLFFSQKERCIIYAENVFVKIDDQHIFTVKELDLQSVPRLEVLTQERQNFPGFQLPSNKVWVTTIGSFKAIFPYDHDFYNAVNGECTSHFKWLKMVHNYKKKPFTVDSPLPCDLVIKIKEFLLEISDDPFEVKLRDNYVLLVDEYLESLKRKALFDKKIGELCSERLLLPSGTIEGLYANLVKKNSEIYIQRSKKIRESGPVRTRLLAWIMTDVNIMAMADTSIHGYNNVTRIMREIDHESPWPEEGLEFSTLWCRGVNISCTEWKFMLRDFPQPMFCVKSMRLYGNLCGAEQMGSKRAKRDVFIDVGEPFGTDVIQRSMPSLKFYHDFDCELESCSYAFGACWEPVMAQCNLSFEKISAPSKDPSPPLPFWDKLRLLLHGRLTLIAKQFTILLHASLDPYNTTEEMELTWNNCGIVLTNAKIMFKGELNVTVRTASRYDDCRLLHFPNLKLTIKLKWVCLANPNDHHAVMPCAPDKLPEYSSNQVHDSFRAFRSLNLNIWISFETKPKAGEDLEVDIPSLVLYGSTLRWFESLQLILSGVTRPTRRGPVFNNVRPRKKPLSRHYKKANLQMCLHKFQVLYWMSHALQKGFQLNGRRVSFSSEHSLTLNPIDDGLIHRPRADWSTIYMNCELNDAEIWLKSILTEKMDSSSENLASAADAFKIVRFYFLSVAKVSYGREALIPTTATSTEEDVKAQSTTPTHKLVVYDLKGAWTKSNRDVAFALFDSFMKSQKLKNNLSTEAVKSYRKEGPNSAVLKHKRSDSTITLSSTNNEVLPISNPNASMKKAPAQIHATAMLQQLIAEADHKFNVYSDDHSTQSRELQLQGLQACSAQDIIHENWSISLVNSQVLLKGCETSGYVIISAAKAEILQREHRPVWRERSLISKTTWKGLLECMQYYATVSAGDNNSLLEKEIMWLTVDNIQDKDETVINNLPDISHLVGSGRSVGGVVSETVGAFLSDNSGGAQPVQLQRIVSKCKCEFFYVSYGDAIDPNSITEVPPPPSEELQSPWEKQDDPVDAFTLMHHDLDVCTNSLQYAMILDIVNNLLLYVEPQRKQAAEKLTRMRFQLQLHSTEDQKRPIQQKQTVIRSLLMKIRSLEKDTHMISKERIEDGDSLELRQEYDHVQQMIRESKEELNTFSEDLDMMLLCYKETQLSQLSKISNVRSDESVTMVRTNEICFKRAQWRLTETDGQIGIADLVLSAFLYTKKSKSDDSVEHLLELGNIRMENLLPREIYRDVLLATEIQKDMPVDTHKRVLRIFCREKAPVGGISVKEHFEINVAPITIAITKKFYSTMLKFCFPDRDASETEVSDELDDNASTSSASTTNLQAKSSTSSSTKRSGKGKKGAKDSEFYVKIEKDDVEKMKERAEKNKLFIYIKIPEVPVRVSYKGNKEKNLEDITDYSLVIPTLEYHNVTWTWLDLLLAMKSVSRRVIFSQAIKQKLHIHQRQPILSAGERATPQEAEDKAVMLFGNRLLNENRNQKKGVFKFASSGKRSGND", "sequence_length": 2300, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "46357a6cb12793d01f09790f8ff9abbb74b5e8848abe8ffecfd8d6c3b4cad725", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VZS7.json", "taxon_id": "7227", "uniprot_accession": "Q9VZS7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10344", "short_name": "Hobbit", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2427-pf10348.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10348", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2427-pf10348.yaml" } ], "pfam_ids": [ "PF10348", "PF10355" ], "protein_name": "Uncharacterized membrane protein C3B8.06", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDGMHMNSTGDNPIEIDFENYANHMNKFLMAHIICMIIAYVFILPAGIVLAMAKSKAHIPVQIVYVILTLIGYIFAHISHHKASPENYYKGNIHRPVGRFFMWITFLIAIVGITTSILKKRMLKEYQPAAEAPGAMEDPEQALQRNSLDDGAPLLPREGNSSDEYLPPQSSRRDVSSEKPSIPSISFINIRSWRTIPKKWCVLQVLRYFHRILGHLWLYVGFFESCTGIVLLAGIFKGQHIFNGLAHWIKGAIFLWYGILSFGEYLGAFSEYGWAWNVVPKQLSEKRFAKYVPTKEMVESFLLFAYGVSNVWLEHLGNTDGKWNHHDLQHASLAFMLWWAGLCGILVESKVVHRLLNATLSATLGQRRSEDSEHSENGLPSYNVFPALTVFFTGIMMSAHDQTNHVSTVIHVLWGRLLAAAAIARICTYIMLYLKPPSSPWPTRPPTEIITSFCLICGGAMFMASSYDVVNKIRLNEMSPMLIMNISVAFTCIVMGLEVMFLILKGYASSR", "sequence_length": 511, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "04cbd581ee015a4e6151e78405d5ec927e28adfb02ceda9adc58f06387dd34ff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O59714.json", "taxon_id": "284812", "uniprot_accession": "O59714", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2427-ipr018825.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2427-ipr018825.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-ytp1-like-c-terminal-ipr018827.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018827", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-ytp1-like-c-terminal-ipr018827.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2427-pf10348.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10348", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2427-pf10348.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ytp1-pf10355.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10355", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ytp1-pf10355.yaml" } ], "pfam_ids": [ "PF10348", "PF10355" ], "protein_name": "Uncharacterized membrane protein YCR061W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVRFVSILSLFGCAATLVTAHDDMDMDMDMDMDMDMNIDTTTSQSIDVSSTASIVPVPHEPKHLHGLPILQSPSLTPAERLYWENYNTTTYFTTQAGNRSALRYHIITLLLVAFVLYPVSLALSAARSRWYLPLLFVNLCICISSVMALSVFKNTFPEEDWYAHNIYGTTSVLLLVFMLVHFFAAVLSVPVSLASKKEYRPVDTIPLNDLESTPVMVNSARGSPSPSSNRDTLFSLSSDTTTATATNNNKRRRAEGEDEGDNTSNHDTLRDEDYDNDDDEIASIEAPPLLPQDIPVFRILFTNTKYQMLAAHLSCVANVVFHMLTYPLFMYIFVDLIIGFAVGNLLGKGIRIFNLLAHWIKGGVFFTLGVVSLARYCGFAAKYGWAWNNISFTSQLTQTRSSNLLFRFAPAGTFTMEFVESFLIFFYGSTNIFLEHLAGNGGAWTAKDLQHVSIAFMFIGTGLCGLLTEYKLNHWRFEHARKRPQTDVVAATPGYSPNPFPAFTIFWTGILMSQHAQSSQFSTTIHTQWGYLLSYGSFFRLLTFLILFLVPNTNSAASKPFTELITSFCLLCGGLVFMESTDQSIEAMEYRGFTPMFTFNLSVGFVSLLMAWEMILFIWKDWLIKTRKTSL", "sequence_length": 631, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0f86f78c3612ce2a51e4cee9684e05f5cc62cc9cf0a9029557f2651a2c988265", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P25639.json", "taxon_id": "559292", "uniprot_accession": "P25639", "uniprot_release": "2026_03" } ], "pfam_id": "PF10348", "short_name": "DUF2427", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/thada-trm732-duf2428-ipr019442.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019442", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/thada-trm732-duf2428-ipr019442.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trna-32-2-o-methyltransferase-regulator-thada-like-c-terminal-tpr-repe-ipr056842.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trna-32-2-o-methyltransferase-regulator-thada-like-c-terminal-tpr-repe-ipr056842.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trna-32-2-o-methyltransferase-regulator-thada-like-tpr-repeats-region-ipr056843.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056843", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trna-32-2-o-methyltransferase-regulator-thada-like-tpr-repeats-region-ipr056843.yaml" } ], "pfam_ids": [ "PF10350", "PF25150", "PF25151" ], "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGVKKKREMQVAALTVCHQDMETLRSFADMEGKNLASLLLHCVQLTDGVSQIHSIKQIVPLLEKVDKNGVCDPAIQSCLDILAGIYFSLTLKNPLKKVLASSLNGLPEVFLTQATHSFTFHLQEELDTADLYSYRKVMDNISSCMENFNLGRASVVNLLKDVLHFLQKSLIEILEENRKFAGNRIVQTQLMSDLLVGVRVAMTLVQKVQGPQGSLWNDSSSPIWQSMCGLLSIFTKFLNDDDLLQTVESTSGLAVILFIKTMFRPSEKLPGLISSLLLRSAECTSIPEWLMNSCRSLCCTDVPASTLLFLCQGTLAMLDWQDGSMGPSGEALLLDIVHVLFTLSSQIKESTLDMFLSRILASWTSSAIQILESGSSGLKGHLNGDSCVPRRLLEYVYTHWEHPLDALRHQTKVMFRNLLQMHRLTMEGADLATDPFCLELTKSLLQLEWHIKGKYACLGCLVETLGIEHILAIDKTIPSQILEVMGDQSLVPYASDLLETMFKNHKSHLKSQTVTNTWMDKWHETWVFPVLSVLCGGNLDQRSYVIDYYLPRILNYSPESLHYMVHILQASTDTGTGSCNHRGALGALMACLRTARAHGHLQSATQAWENLVCSARVKQGLIHQHCQVRIDTLGLLCESNRSTEVVSTEEMQWVQFFITYNLNSQSPGVRQQICSLLKKLFCRIQESSQVLYKLEQRKSTPDSENGSIREQPSVTLQQYKNFMSSVCNILFEALFPGSSYSTRFSALTILGSVAEVFPDPEGNIQTVYQLSHDIDAGRYQILMECFTSTFEEVKTLAFDLLMKLSSVTAGQFQDSEKLQDLFQAALELSTSTKPYDCVTASYLLNLLIRQDALPAVLSASSPQQLTRGAGETSAVLERNTLVVIKCLMENLEDEISQAENSLLQAASSFPMYGRVHCITRAFQRLPLNDLRLASEWRPLLGRLLLLSYRLSTVVAPVIQSSSPEGLIPVDTDSASASRLQLILNEIQPRDTNDYFNHTKILKECDSFDLEDLSTSVSNIDSSAEVKGKEEKACDVTAQMVLACCWRSMKEVALLLGTLCQLLPVQPGPESSNVFLTVQQVKEIGDYFKQHLLQSRHRGAFELAYTGFVKLTEILNRCSNVSLQKLPEQWLRSVLEEIKGSDPSSKLCATRRSAGIPFYIQALLASEPKKSRMDLLKITMRELISLALSADDSKGRVPQVHALNILRALFRDTRLGENIIPYVAGGAKAAILGFTSPVWAVRNSSTLLFSSLITRVFGVKRGKDEVSKTNRMTGREFFSRFPELYPFLLKQLETVASTVDSELGEPDRHPGMFLLLLVLERLYPSPMDGTSSALSLAPFVPFIIRCGRSPIYRSREMAARALVPFIMIDQIPSTLCALLNSLPNSTDQCFRQNHIHGTLLQVFHLLQAYITDCRHRTNADFLQELSDVTACTKAKLWLAMRQNPCLVTRAVYIDILFLLTNCLDRPEEGKQTALESLGFWEDVRRIILESELIKGFPWTFKVPGLPQYLQSLTKLAIPEVWASLAEAKGQATAVPLSFSRLLKSSFPEVRLLALDTLLERARSSEQEQKEPLPLLCSMGEELLLLAMKEDHPGCFCRVLKILYHLNPSEWLPQTECYAHLSPKEFLMWSMDIASNDRSEIQGVALKLASKIIAYRVQSCEKNKDSLAPELRQWVQLVVWSCGDHLPTASRLAVAEVLTSTAPLFLTSPQPILELQGTLSLWRCVLTLLQSEEQTVREAATEIVTTAMSQGNTCQSTEFAFCQVDASIALTLALAVLCDLLQQWDQLEPGLPILLGWLLEEGDDLEGHVQSPHQGEEEHIFEKSEVNFWAETLTFVKSLCRQLFHLLCQSGWQSPHSQKLCHLQRIASEQSHLISQLFRELPLSAEFLKTVEYTRLRIQEERTLAVLRLLACLEGKEGLRAEDCPREWRQVMAPRTEAAC", "sequence_length": 1938, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a0a819c5ece98f2aa1b94586fbe6de1cf4ae9f55ee391120a9899d13f437115f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8C756.json", "taxon_id": "10090", "uniprot_accession": "A8C756", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/trm732-c-pf26523.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26523", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/trm732-c-pf26523.yaml" } ], "pfam_ids": [ "PF10350", "PF25150", "PF25151", "PF26523" ], "protein_name": "tRNA (32-2'-O)-methyltransferase regulator trm732", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLSVIKAASLDLESLPSQPTVSSFQQLRETFIQSKSEDWYLKNGLFFRYYSFLKSSLENATLDGPSQVACLDTISVWLRRIFNACKQDPEISKYVWDTMELKFWTNLFSLPANKISIPGLTGVQVAVKDVFSKSLQLYLLVCPSEDIKNDFLLDSLKHALHWDRHAKVVCTAIQLLVKVTGAEAVFAFQPDFFEQSLKLLKDYSYAQAISSTILTVLTLRFKSLSEETEDREEVETKWMNIWCPIILYEFYGNDRQVQAGMSSFLIPSLLGVSPGITVKFLSRLQNYPNVSKDARDAACLYALKIAKDSKIIKNLDLVKEHAFVKTLFKHPDIKIQLACFRLIALCPNVSSPLSFEDFDCLESNIEFSFNVLDPDSRQILLKSMQDFFIRLRASCHSIARTMRSRHSDKVALSGLLDRAMQFLTSFISVCKKHLYPTCNYQQVLVSLSFLDTLISFGLDDNVESSSIREAQHDFPFSMVIIDRDLSRLMIDRLKDPYDDIRNLCLKILLSYKSLPGFISDSDAYFLFNHGLELLNAVRSHECDGGAKTIYLCNHFMEKSVPGSVLANTKVILNRLKSNIEHAKTSLLEAAVNCPLQGYLIQLTYIFQSLSPTIVKNDNESWKNIVMELIKASETIWGLIKDVLCDDSPEGNLPDGEGEGGIVSNLEDTPAQLILSYSWRSLKETSSLLTVLLTKCLSLFDEEFTPFTLNYYGELMMTWLWEIRHRGAFTSVYPCFIEYCSFLFECNKHEISELPDPWLHKNLSVIQEKSSFITRRSGGIPLSITAILVAGKDKREQLIEQTVISLISIAKQPVEQKNIAGQFDLPQVHAMNTLKTIFTEHRLSSVSVEYLEPAIALSIEGFSHELWPIRNCSVMLFTALINRAFGSKKPKDAVNLGNNKGLSTKMFFSKFPTLHDYLLRELEVSVASLSSNDQPSTGLYPILNMFSRLQYAQPYGNENEWTGLSQFEPLIFKCTASRICKVREIASLSLTCLLDCSKMTTFIVSQLKGVAGLQQNEIHGKLLTIRAVLSCFFSKLTLQQVQEFYEVVPLAFINCFLEFTSSKTSFYAKKLFLEVLNSYFMSNTDSNAKRLQQLRRMTMDYCKRMLLDRKANVTNVFNTIGLPIHQQMAATIFLENLKEFSVYCDAHSIGFLVSKLLHYEFYEVQLTTLRSIVDSPRKKIIVNNPEILQALIKLTPRNQWSQVRALALSLLSDSLNSTSYRLLGISCSDMVSNILSNECLPIKESFIVLLGSCIKQLKTENFLEYKVTFAKWVEILLSYSNEYQPFSSRKAALDSIIHFDLFNAESTAEAFSFEFYILYLLLGDFLNDDDEEIRSLAANHAYQVLGTSAQCVTEIWNLWKLRTKATFGGQHDFQHCINKRLILEDGCELASVQLDNALSRNCSLFERERQNLYYSDNQKLEDLLFYASYPNEKLKDWATDGINAILSRFEDVSRDGPLGKTSDPNVWFTIYKIIRIAEHVHLPLDRVHSLMNRIDGHPSFCQ", "sequence_length": 1502, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e39ceeaddebba2879906fce82e7c6fc53689c8e59bd6bb9f17cf7098dc04b659", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O60081.json", "taxon_id": "284812", "uniprot_accession": "O60081", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/thada-trm732-duf2428-ipr019442.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019442", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/thada-trm732-duf2428-ipr019442.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trna-32-2-o-methyltransferase-regulator-thada-like-c-terminal-tpr-repe-ipr056842.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trna-32-2-o-methyltransferase-regulator-thada-like-c-terminal-tpr-repe-ipr056842.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trna-32-2-o-methyltransferase-regulator-thada-like-tpr-repeats-region-ipr056843.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056843", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trna-32-2-o-methyltransferase-regulator-thada-like-tpr-repeats-region-ipr056843.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf2428-pf10350.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10350", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf2428-pf10350.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-trm732-c-pf25151.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-trm732-c-pf25151.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-trm732-pf25150.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-trm732-pf25150.yaml" } ], "pfam_ids": [ "PF10350", "PF25150", "PF25151" ], "protein_name": "tRNA (32-2'-O)-methyltransferase regulator TRM732", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTDVQFSSQEIELFRVKEFLIANNPAKINNENKDAVLTQIEHDFRYLIQYIKDGLPNLNESTRLIFPDTFSICLLRSHQIIASKKIDSQEFLSAVKEQLLTEANANIIFEYVLDFWADGGAPLMNALRDLFSKLLNLLKITYPMSTLKDVLFNWMNEILEVPSTLRVQYYLIDALSSDFDLYYIIEKKPHFIDNSFSLMNSDLLANSVGKCIVSLLLNIYEKHFKKNESFVQEWIQLWKSCALKYIHDKQYTKSINLYIMIPLFKNMPNSAFTLFLECMSNKDPSLLLSLLKIGQELGIEEEPFCDNKYTTVDSVNKLIEQDEYKLQVFEILTFSTKKSKPIRPFVFKTIKQYLYVFFVDTELERRNYFCSSMKHFIFRTRDCAYSLARDARKLKKAEKFPDEQREKLAQVEEARAFLVWLCNFIKYNLAPGTLYQANVTSLKLMHILIKSGVDKSTPQKFLDNQNKREYPFSIPILQDVTFLRLLIDLLVSNYADVRELSKEMLFIMISADESRGLFLDTLDANALKWTATSLLSDYEKGDAGATVYEFIFTVMGSQRSFIDQTIDILAQMVQNLQNDSIGCAENSIGPHFAALSLILNKFNSEENHQDTSKIISKLINLVLKSWEATRNVVCHDSAHGILPEKYANCGVPDQVIISHAFRAIKEASYLLETILKKYPLTRDQLDSIGDLFIVQLSTIRHSGAFQAVLPGLKAFCIRCQLEFPAILEELLSKSVKSLKSKTQHITRRSGGLPFLVTTVLSAEVTKGRPLLQKTFENLLLVARLPIPPHQDEFDLPQVNAINCINAIFVEPKLSVHCTSFVSEALELALLNFDCDIWALRNCSIMLFTSLQNRIFGKVGRSVSAKLFFTKYSGLRQLLLNILNSSIAQYSGSERKSYQIESIFLVLNVLLRLRPTAGYTGLKEFNVSVYECLSNENWKIRDMASRVLHMLSENFEEEIRKLLDLASIAKQNQLHGHLLALQQLVPQYLSGTRDMELIQRILEKKRMLLLENKCFITKKAYLKLTCCILETCDIPDSILKDYISTLRNTFIAENNEYVVDGSKQLYLAQILDMLLKYEDSIYLDDICLLGLYSPFYEAQLSTLQYMNTNFHWETTRNSEFLEQLQLLLRVPDLLPMAKALVVKILSRKKNTLSLTTCTDLLKTNNSEDTKLAAVSSLSAKLSSQTFHQVWNLLQGFFADSCSKDFRLASLECLTAYPESCKNSRILLQLYNFLWDDDSEIREKASFYLNKNFIQTADWEYNRNTSVTALIFTKKFVDVFTSSEVVEELCLQLFQYLNEYDMFAAEESAKNCLFTIEKDNQFINELQKAMHILNMIKLTGRDISKCYKDQIHHLKSALLEHFNTEDFKDSPLGWCSNAEIFSRITLLKELIQHYSPSDYENFINVLTKHSVHPLIISYSQL", "sequence_length": 1420, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0c7df5335aa2eeb49862d5ab2e414df95401eb243136432d5eb13513ba8e60e0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q03496.json", "taxon_id": "559292", "uniprot_accession": "Q03496", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/thada-trm732-duf2428-ipr019442.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019442", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/thada-trm732-duf2428-ipr019442.yaml" }, { "cited_uniprot_accession": "", 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"InterPro:IPR056843", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trna-32-2-o-methyltransferase-regulator-thada-like-tpr-repeats-region-ipr056843.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf2428-pf10350.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10350", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf2428-pf10350.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-trm732-c-pf25151.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-trm732-c-pf25151.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-trm732-pf25150.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-trm732-pf25150.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGVKKKKEMQVAALTICHQDLETLKSFADVEGKNLASLLLHCVQLTDGVSQIHYIKQIVPLLEKADKNGMCDPTIQSCLDILAGIYLSLSLKNPLKKVLASSLNSLPDFFLPEAMHRFTSRLQEELNTTDLYSYRKVTDNISSCMENFNLGRASVNNLLKNVLHFLQKSLIEILEENRKCAGNHIIQTQLMNDLLVGIRVSMMLVQKVQDFQGNLWKTSDSPIWQNMCGLLSIFTKVLSDDDLLQTVQSTSGLAIILFIKTMFHPSEKIPHLISSVLLRSVDCTSVPEWFMSSCRSLCCGDISQSAVLFLCQGTLAMLDWQNGSMGRSGEALLLDTAHVLFTLSSQIKEPTLEMFLSRILASWTNSAIQVLESSSPSLTDSLNGNSSIVGRLLEYVYTHWEHPLDALRHQTKIMFKNLLQMHRLTVEGADFVPDPFFVELTESLLRLEWHIKGKYTCLGCLVECIGVEHILAIDKTIPSQILEVMGDQSLVPYASDLLETMFRNHKSHLKSQTAESSWIDQWHETWVSPLLFILCEGNLDQKSYVIDYYLPKLLSYSPESLQYMVKILQTSIDAKTGQEQSFPSLGSCNSRGALGALMACLRIARAHGHLQSATDTWENLVSDARIKQGLIHQHCQVRIDTLGLLCESNRSTEIVSMEEMQWIQFFITYNLNSQSPGVRQQICSLLKKLFCRIQESSQVLYKLEQSKSKREPENELTKQHPSVSLQQYKNFMSSICNSLFEALFPGSSYSTRFSALTILGSIAEVFHVPEGRIYTVYQLSHDIDVGRFQTLMECFTSTFEDVKILAFDLLMKLSKTAVHFQDSGKLQGLFQAALELSTSTKPYDCVTASYLLNFLIWQDALPSSLSAYLTQQVACDNGDRPAAVVERNTLMVIKCLMENLEEEVSQAENSLLQAAAAFPMYGRVHCITGALQKLSLNSLQLVSEWRPVVEKLLLMSYRLSTVVSPVIQSSSPEGLIPMDTDSESASRLQMILNEIQPRDTNDYFNQAKILKEHDSFDMKDLNASVVNIDTSTEIKGKEVKTCDVTAQMVLVCCWRSMKEVALLLGMLCQLLPMQPVPESSDGLLTVEQVKEIGDYFKQHLLQSRHRGAFELAYTGFVKLTEVLNRCPNVSLQKLPEQWLWSVLEEIKCSDPSSKLCATRRSAGIPFYIQALLASEPKKGRMDLLKITMKELISLAGPTDDIQSTVPQVHALNILRALFRDTRLGENIIPYVADGAKAAILGFTSPVWAVRNSSTLLFSALITRIFGVKRAKDEHSKTNRMTGREFFSRFPELYPFLLKQLETVANTVDSDMGEPNRHPSMFLLLLVLERLYASPMDGTSSALSMGPFVPFIMRCGHSPVYHSREMAARALVPFVMIDHIPNTIRTLLSTLPSCTDQCFRQNHIHGTLLQVFHLLQAYSDSKHGTNSDFQHELTDITVCTKAKLWLAKRQNPCLVTRAVYIDILFLLTCCLNRSAKDNQPVLESLGFWEEVRGIISGSELITGFPWAFKVPGLPQYLQSLTRLAIAAVWAAAAKSGERETNVPISFSQLLESAFPEVRSLTLEALLEKFLAAASGLGEKGVPPLLCNMGEKFLLLAMKENHPECFCKILKILHCMDPGEWLPQTEHCVHLTPKEFLIWTMDIASNERSEIQSVALRLASKVISHHMQTCVENRELIAAELKQWVQLVILSCEDHLPTESRLAVVEVLTSTTPLFLTNPHPILELQDTLALWKCVLTLLQSEEQAVRDAATETVTTAMSQENTCQSTEFAFCQVDASIALALALAVLCDLLQQWDQLAPGLPILLGWLLGESDDLVACVESMHQVEEDYLFEKAEVNFWAETLIFVKYLCKHLFCLLSKSGWRPPSPEMLCHLQRMVSEQCHLLSQFFRELPPAAEFVKTVEFTRLRIQEERTLACLRLLAFLEGKEGEDTLVLSVWDSYAESRQLTLPRTEAAC", "sequence_length": 1953, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3e41fab3e39671c3549d37d9b9946ea8baa670fcf6ff836f3c32ba2dccf51694", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6YHU6.json", "taxon_id": "9606", "uniprot_accession": "Q6YHU6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/thada-trm732-duf2428-ipr019442.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019442", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/thada-trm732-duf2428-ipr019442.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trna-32-2-o-methyltransferase-regulator-thada-like-c-terminal-tpr-repe-ipr056842.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trna-32-2-o-methyltransferase-regulator-thada-like-c-terminal-tpr-repe-ipr056842.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trna-32-2-o-methyltransferase-regulator-thada-like-tpr-repeats-region-ipr056843.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056843", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trna-32-2-o-methyltransferase-regulator-thada-like-tpr-repeats-region-ipr056843.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf2428-pf10350.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10350", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf2428-pf10350.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-trm732-c-pf25151.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-trm732-c-pf25151.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-trm732-pf25150.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-trm732-pf25150.yaml" } ], "pfam_ids": [ "PF10350", "PF25150", "PF25151" ], "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNDLNLRVAALKVCAHPKRFAELRDALVPLPNTWIAAPHDFVLQFAAAKSSAEQVQVVKDVFYGEQAQDHEDVAHFLADLLLASPLKHAVRNQLTKLFSDNALAKQNASPHRRHSKEHLLEALQQSLGEMANSLAVITPPVSHERTNDVFVSANACLQNFPFGREALGKQVHRFAPLLTTALERYWADICDPTLELSPTRRNELYLYVQNALRFLVSLLAEWSDKLRLFEDQRFPGTSNAVAQKVARYYDTPWDVRSIAALLIGHLARFSGTFKAYVEDCSRPKAEQDVPIQMAALLVLRPVDYTENATLALAILKRIVAVSELKSTVTNLLVFLSKHLFIYSKSLGEMHAHLPDDQKLLYQRILAQLQVFALQNISSDTDSVRHMSSALLHQVLQHAQAAGQEELFQVVYRQFEDRAAYLNASCMALEQLVAVAGVSKSIENCPSLFGVIFPRHLGCEDCVDALFKAMMVSAHKTEPFAEWQSRWFGLLLAAIRVPEKRRQVIEELIAQAVQLEPTRLAQVLLPDDRLPLSCKLAAILGVRQLSARRQNLLRGMKEEVEQALIGLDDHTRLLALRFLVETPRPSELLNADQMGAIELYVRHNANNPSAHLRQLGYGLLQKALKRVHFGLVEYRKSRTPASQEVLQFLIRLIRTLAQNLFPTANYGRRWLSLRLLRDCLELSEMVGITFSELGIELPTEALMACLGDSYEHNKVLAAQLLERFQSHSLFKPDEMIELLLSLRPSDSATGAFQLQVYCKASRVQSEMPTPTHGGTIHEPLTFRALQWCLQHLREGLRLAQLDLGEAAKLNPLYGLLFASRHLLQQLKLKELAKEPQWRQYIDELVTMCLAVSSVVLPVVSSASPEGHLPETCDQETDQPLTNVLDRQLSREELLQVRTTPQMILLCAWRSSKEVCLILGELVQRAPLEEEEDEEQQQQQGDFLLSRAQLEAIGEHFLQLLAETKHRGAFEQAYVGFTMLCRRFWHSESVRLNQLPGQWVDEAMAMVSGQEEWAGKGARLCATRRSAGMPFMLQALVGTELKLGTHATLYRCMNRLLEVCERRTGGAAGITARSHALNIMRALFRSSELAELVTEFMARGIQCALDGLLLAEEWAERNSATLLLAALIVRVFGVERARLETGELHVRNRMTGRIFFTRYPQLFDYFHAALQRESEQMDAGGGGSENASGKRRQAVQLEAMLLMLSRLYPSSLEGAESTLNLSEFVPFLIRICHSHDLMTREMAALVVANFVTQEQALAEIRRIVVELKALQLRLKNTEAANTKLNTNVLHGQLLLLLHLHRLVRWTRPSLTRMQLHTLAELAAPLLQHDACAFSALVAVMVAAMEDAVEPGLLDFQLLEQIGVVYLLNHKEVQSRCQQLGISNRFYQIFGLHLHRLRGISQGIVLHIVEDLAETIWALDELKVELWLYILLQRSLSEQNSLVSEQDIEHFEFSRDIRRYFETLSREQREEVGQELYESPAVRSSVLHMMHMIKSSKNSCWSLQLAGRLAALQTLLRDPGLELNQLVQRCSEEHSTHQEAGLLLGLRRLIGESKMLERKHWLPMLNYAQRLVHPGQPVYLRHQAAELCDSLARNHLRDQLVAGTTDVDIGLVGRFSGLVLLLLHDDAEWVRHRAVQLVCGAGLRTRSGAGQEQEQSAMAPLILPSALIPPFLDTMIGKLTFDDFNMVQRLVDIIAEPFTTADAMELFDKQENNHYCERNHVLTELWDARGRADPRARTPTIPTGYQIFK", "sequence_length": 1746, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8dc654aafe6bbe35053632022e45f9f98a39c6cd332b375dd481969bd1fa8aee", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VWB9.json", "taxon_id": "7227", "uniprot_accession": "Q9VWB9", "uniprot_release": "2026_03" } ], "pfam_id": "PF10350", "short_name": "DUF2428", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2430-pf10353.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10353", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2430-pf10353.yaml" } ], "pfam_ids": [ "PF10353" ], "protein_name": "UPF0321 protein P20C8.02c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLLFCICCVFIKLVLAEVNLTFVDYAKLPPNYAELLANLIDQHGLMLFDTADVRIEAYNYLLNSITETNTDTDAYLCQLLTGQYTTDCYIFGDSVYEGPENINPSTRYID", "sequence_length": 111, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d8f9353bbb980e56bf4402bc24e2038a52949f56edd8e8b8f15b201d98ae774a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HDT7.json", "taxon_id": "284812", "uniprot_accession": "Q9HDT7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2430-pf10353.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10353", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2430-pf10353.yaml" } ], "pfam_ids": [ "PF10353" ], "protein_name": "UPF0321 protein PJ695.01c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLLLYICCLFLKFILANVDLTFVEYAKLPSKYAELLANATNQQGVMLFSTGDIRIGAYNYLVNNVTEINNDTDAYLCQLLTGQYTTDCYIFDTNSDDKPETFNSSIHLLNSDLDPK", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1ac806b35386925eabf732bb15a521826a9544cc988e92c94a239bb063742013", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9URW1.json", "taxon_id": "284812", "uniprot_accession": "Q9URW1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2430-pf10353.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10353", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2430-pf10353.yaml" } ], "pfam_ids": [ "PF10353" ], "protein_name": "UPF0321 protein C569.02c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLLFCICCAFIKLVLAEVNLTFVDYAKLPPKYAELLANLTDQHGMVLFDTADVRFEAYNYLVNNITEINTDTDACLCQLLTGQYTTDCYIFDDSVYEGPENINPSTSILIKD", "sequence_length": 113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3594e4d3a4ba52d046bdb1dcf594ccf1cd963e4d5c8eaf4cf6571d52cd57edf0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y7S1.json", "taxon_id": "284812", "uniprot_accession": "Q9Y7S1", "uniprot_release": "2026_03" } ], "pfam_id": "PF10353", "short_name": "DUF2430", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/rrna-uridine-n3-methyltransferase-activity-go0070042.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070042", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/rrna-uridine-n3-methyltransferase-activity-go0070042.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/25s-rrna-uridine-n-3-methyltransferase-bmt5-like-ipr019446.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019446", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/25s-rrna-uridine-n-3-methyltransferase-bmt5-like-ipr019446.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bmt5-like-pf10354.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bmt5-like-pf10354.yaml" } ], "pfam_ids": [ "PF10354" ], "protein_name": "Heavy metal-associated isoprenylated plant protein 41", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAMRELSQLNRDSDGDEEVWVKHYSSNHQILLVGEGDFSFSHSLATLFGSASNICASSLDSYDVVVRKYKKARSNLKTLKRLGALLLHGVDATTLHFHPDLRYRRFDRVIFNFPHAGFHGRESDSSLIRKHRELVFGFFNGASRLLRANGEVHVSHKNKAPFSEWNLEELASRCFLVLIQRVAFEKNNYPGYENKRGDGRRCDQPFLLGECSTFKFRFSRVAKELYAEKVRSREVKERESMYPEAILNKQPVSFDHRYRLQTEFEAIAGTITLGKSKILWLSQEKGHLHWIFVTTKNVDVYSSKIPVFLICTLESRQRDIACFVKTFQFKLVKNHYPNTLTAGVEFLVKFITGKYEECQQVTYLRKNFSGYGDGNKQRIVLKMDMSDEKSMKKAMKIASAKPGVRSVSIQGQNDQLVLLGEGIDLAELTRELKKKVCMTTIITVQAAPPQQPPQPHPMGQYNQMPPARRCTCEIPNSGFCGFCRSMSQPNYQVVPSPYYPPMLYCRDETDGCRIL", "sequence_length": 515, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "04d49aabdd366f820a69ba081337e04ae252f9626a23429e320d057f1b6280fd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4I1X0.json", "taxon_id": "3702", "uniprot_accession": "F4I1X0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/rrna-uridine-n3-methyltransferase-activity-go0070042.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070042", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/rrna-uridine-n3-methyltransferase-activity-go0070042.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/25s-rrna-uridine-n-3-methyltransferase-bmt5-like-ipr019446.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019446", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/25s-rrna-uridine-n-3-methyltransferase-bmt5-like-ipr019446.yaml" } ], "pfam_ids": [ "PF10354" ], "protein_name": "Uncharacterized protein At4g26485", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEISEKWIRHYSSTHKILLVGEGNFSFSLCLASAFGSAMNITATSLDSEDELSIKYMDAVDNINILKRYGCDIQHEVDVHTMSFDNSLSLQRYDRIVFNFPHAGSRFFGRELSSRAIESHKELVRGFLENAKEMLEEDGEIHITHKTTYPFSDWGIKKLGKGEGLKLLKKSKFELSHYPGYITKRGSGGRRSDDYFPVGECSTYMFTQS", "sequence_length": 209, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9c5423733ec4cec23735644b389c758349e6b247c56bc59646f650eeaf35d8b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C8L4.json", "taxon_id": "3702", "uniprot_accession": "P0C8L4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/rrna-uridine-n3-methyltransferase-activity-go0070042.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070042", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/rrna-uridine-n3-methyltransferase-activity-go0070042.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/25s-rrna-uridine-n-3-methyltransferase-bmt5-like-ipr019446.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019446", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/25s-rrna-uridine-n-3-methyltransferase-bmt5-like-ipr019446.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bmt5-like-pf10354.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bmt5-like-pf10354.yaml" } ], "pfam_ids": [ "PF10354" ], "protein_name": "25S rRNA (uridine(2634)-N(3))-methyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARKLKGKIGSKGLKGALLRHKAKVKLVRNIESKQKHELRKKNSSANNKTVKRNQEFQKLNQGKVMPFEKDETLMLCGEGDFSFARSIVEQNYIESDNLIITSYDNSVNELKLKYPHTFEENYQYLKDLNIPIFFQIDVTKLVKSFKISKNNTWFKIINRLSDHRWGNKPLQNIVFNFPHNGKGIKDQERNIREHQDLIFNFFQNSLQLFNLINTKIQNDTLRYTQGYDLNEDTPQAKKLTAEGYGNIILSLFDGEPYDSWQIKLLAKKNGLTLSRSSKFQWENFPGYHHRRTNSEQDTTKPAKERDARFYIFSKYVSNSSKHNRKSKKDTDSDSD", "sequence_length": 336, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ee7b3c8de06f11ef2e4a3a3c97b749c6b6432372a4a03890e08533ff933ee57c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40493.json", "taxon_id": "559292", "uniprot_accession": "P40493", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/25s-rrna-uridine-n-3-methyltransferase-bmt5-like-ipr019446.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019446", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/25s-rrna-uridine-n-3-methyltransferase-bmt5-like-ipr019446.yaml" } ], "pfam_ids": [ "PF03147", "PF10354" ], "protein_name": "Ferredoxin-fold anticodon-binding domain-containing protein 1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPRRLLLVGEGNFSFAASLIDGLDPSVSVTATGFQHRAALEGDPVALENLKRLRERGVEVRFGVDCTQLSHALPADDRDFDRIYFNFPHCGRKAGVAKNRELLAKFFQSCADVLAKAGEVHVTLCRGQGGTPADKPQREWHNSWQVVAMAALGGFILSDVCPFSCEAVPGYKCTGYRSQDRPFHIEGALTYIFTQSLPFESCQPRTFRVRLEDRWFYFTEPEALPGKLNRRFLEASSCHPIRTINEKLIAELGKTFPLKRLKCPLPLLSRGGPSVFLPATCDLLPTFWIRLHEDNSCSEFQNGEITQEMEEIPVSVSECTLPESPVRDGCKGAQEGICGRVKLGLRPSLLVHVEAVIHSPDFLPASLHVLSGPVFRKCHILPFMMPAFHETLFILGFDNNMKESCLPSLLGHLKDALGNLLTQTLQEGSSLGTSVEFVLQPNGKDYIIHVKSLNFGPDCAENLIIGSILTSKIVKHKHQCFVFVSINLDLLVMLAYGISDWRILWTFDNRFLKRFAPGKIEHFKSYSLYPPCYVHDVSFWVDEKKAFDELEFHTVARAVSQDTVVSVQYRDRFQHPETRQVSLCYRLTYQTCDKALTPQLAAAMQSQFRKEIQRQLHVSPR", "sequence_length": 622, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fa19d8fef58659a60f78bb45a36fce1fda52f2b98a151fa8a87295559d144120", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UY23.json", "taxon_id": "10090", "uniprot_accession": "Q3UY23", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/25s-rrna-uridine-n-3-methyltransferase-bmt5-like-ipr019446.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019446", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/25s-rrna-uridine-n-3-methyltransferase-bmt5-like-ipr019446.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ferrodoxin-fold-anticodon-binding-domain-ipr005121.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005121", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ferrodoxin-fold-anticodon-binding-domain-ipr005121.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bmt5-like-pf10354.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bmt5-like-pf10354.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/ferrodoxin-fold-anticodon-binding-domain-superfamily-ipr036690.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036690", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/ferrodoxin-fold-anticodon-binding-domain-superfamily-ipr036690.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/fdx-acb.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51447", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/fdx-acb.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/ferrodoxin-fold-anticodon-binding-domain-3-30-70-380.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.70.380", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ferrodoxin-fold-anticodon-binding-domain-3-30-70-380.yaml" } ], "pfam_ids": [ "PF03147", "PF10354" ], "protein_name": "Ferredoxin-fold anticodon-binding domain-containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPRRLLLVGEGNFSFAAALSETLDQSTQLTATCLQRPAELARDPLAWENLQCLRERGIDVRFGVDCTQLADVFELHEREFDQIYFIFPHCGRKAGVAKNRELLAKFFQSCADVLAEEGEVHVALCRGQGGTPADKPQREWHNSWQVVAMAALGGLILSDVYPFSCKAVAGYKCTGYRSQDKSFHVEGALNHIFTRSLPFEGSQPRIFRIKLGNQWFSFPEPEALVGKLNRGFLEAPSCHPIKTINEKLIAELGKVFPLKRLKCSYPLLPQEGTSVLPFWNCDFLSAAFWISLHEDNSNSESLTGGTSQDVEDFLVSFSELSLLKNPGRDGKEEACEGTCGQAKICLRPSLLVHVQDVIEVPDFLSGSLHILSGPVFQKCHILPFTMPAFHETLFILGVNQNLKDGCLQSLLDHLKGILDSLLTQTLPESSKLSSLVKFVLQSNGKDYMIRVKTHNFSPDCTEDLIIGSVITSATSVIHKDQCFVFVSMNLDLLAMLVWCISDWRMLWTFDNRFLKNFVPGKIEPFKSHSLYPPCYVHDVSFWIDQKKGFDELEFHTVARAVSQDTIISIQFLSRFQHPKTQQVSLCYRLTYQTCDKALTQQQVASMQSQFRKEIQQHLYVIPR", "sequence_length": 624, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4d0efa4f71050d93f89e509baecb7f25039c617d978512f9e59b530660c16472", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BRP7.json", "taxon_id": "9606", "uniprot_accession": "Q9BRP7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10354", "short_name": "BMT5-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rrg7-pf10356.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rrg7-pf10356.yaml" } ], "pfam_ids": [ "PF10356" ], "protein_name": "Required for respiratory growth protein 7, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIKNYLGRRWLNNPAIQAYVKQNAAVAHSTVFQGNLYEYTVMRELSEKLRMTKLRKTGGAHDGGVDIKGSWPVDDIYWKISSLMPNLEMASNIKRTNSQNGFVLKPLKYRIIDHTFEPLKVLVQCKAFTKSKLSPREFRELVGTFTSLVSHSQRNKTVCIMCSPHMLTKDTLNLINNITLPLIYLRVEMLKEKTDGHFDLINSGKLINYYENSYASTLMQDCKISEWLKLKLYKNSDFNSEK", "sequence_length": 242, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "14727e804757fb57594c8636f11bbf21b78aa440a2dbdfc1dfaaae0e5f7976b7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q08774.json", "taxon_id": "559292", "uniprot_accession": "Q08774", "uniprot_release": "2026_03" } ], "pfam_id": "PF10356", "short_name": "RRG7", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2433-pf10360.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10360", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2433-pf10360.yaml" } ], "pfam_ids": [ "PF10360" ], "protein_name": "Uncharacterized protein C16H5.12c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVDTAKSDIQAEPSTGTLENKSSKTYSDSENNSTLDVSAQVLTLDNKSRILCIADVRGELSLINSLVEETNASCVIHTGDFGFFERSSLPSISERTLRHIVQFSPLIKKLPRSKNFDYYPSNPIGDLKNSIASHPDCLLSELPQFLSQEKKFSVPVYVVWGACEDVHVLEKFRSGEYSIPNLNIVDELHSYLLQIGDMKIRLLGLGGPYVPFKLFDNGDGKGTIAGGQGTMWTTILQMGELIETAKSLLDREEARIFITHHPIGREGVLSQLATACQADLTLSAGLHFRYGASYNEFCVNHSPEHYLQKLSAARAQFMEVYDTVKAEVEKMVTPEQHHLINNVVRLVSRMPDATNSYAMNNMLPGTAFKNLWNFNLLDASFGWTVFVVENGHVQVESKSHGFNLGYRRMASRRNENYASHIPRSTSENTGTYYYANNRLVESQAQFTKNREATATPTEEEQIEGYDQEHTDELGMSRANTTEESAETHEVIEEKSGPPAAEEEPISGVAEKPSPNEEEQPAIGGKEEVDVEEVTKGTGNLELGETTTEVTILEQENAANVTRSQAQEGRRTDMQKGNDREFRQYSGEQRYERCGFHITPCNSEEEARSYFKDGTDSLITNIQIRTSLNRYKSPQAPQNVNPTNYAYVFVENQNAVSKALGSIKVPEGVRVNIMRDDSYYRQNRGWYRNNRMEGHGTGMRTNRGRGRGGRMNRMQHPRPLQSGGSVNKQSAEPTTHG", "sequence_length": 737, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "338e457754328d1576f8b71071e482c9766858e236f84e444d82cb79fe58e054", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O42947.json", "taxon_id": "284812", "uniprot_accession": "O42947", "uniprot_release": "2026_03" } ], "pfam_id": "PF10360", "short_name": "DUF2433", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2434-pf10361.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10361", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2434-pf10361.yaml" } ], "pfam_ids": [ "PF10361" ], "protein_name": "Uncharacterized protein 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"path": "data/traits/sequence/domain/interpro/tango6-heat-repeat-ipr057407.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057407", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tango6-heat-repeat-ipr057407.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tango6-n-terminal-domain-ipr057347.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057347", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tango6-n-terminal-domain-ipr057347.yaml" }, { "cited_uniprot_accession": "", "commit": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rtp1-c2-pf10304.yaml" } ], "pfam_ids": [ "PF10304", "PF10363", "PF23565", "PF25267" ], "protein_name": "Transport and Golgi organization protein 6 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAARQAVGSGAQETCGLDRILEALKLLLSPGGSGSSSLQVTKHDVLLATLKSNLSALEDKFLKDPQWKNLKLLRDEIADKAEWPQNSVDVTWSFTSQTLLLLLCLKETMIRLAANFNPGKPNPRTPEVAPALSPDALSISQQKTVQFVLQFVVTLGICPYLMPGVGVPLRYRTEFGAVVQDVVCFDAAPDATRRLYTSCKALLNVAQHTSLGSLIFCHHFGDIAAGLCQLGFCPTKRKLLTPAEEVLTEEERTLSRGALRDMLDQVYQPLAVRELLILQGGPPQSCTDVKTQMRCRAPAWLRRLCGQLLSERLMRPNGVQAVVRGILEGAGAGAAGGSDAEVTAADWKKCDLIAKILASCPQQSLSPENYYRDICPQVLDLFHFQDKLTARQFQRVATTTFITLSRERPHLAAKYLLQPVLAPLHRCLNTAELSESDMVPGTILVTEEELSRCIEDVFKVYVVGNEPLTVLMDSLLPVLGVLFLLYCFTKQSVSHIRSLCQEILLWILGKLERKKAIASLKGFAGLDKAVPSLHSLCQFRVATQGGIMITIKEAISDEDEDEALYQKVSSEQGRVEHLGDLLSHCQECGLAGDFFIFCLKELTHVASENETELKTEPFSSKSLLELEQHQTLLVEGQERKLLVLQLMAVLCERMSEQIFTNVTQVVDFVAATLQRACASLAHQAESTVESQTLSMSMGLVAVMLGGAVQLKSSDFAVLKQLLPLLEKVSNTYPDPVIQELAVDLRITISTHGAFATEAVSMAAQSTLNRKDLEGKIEEQQQTSHERPTDVAHSHLEQQQSHETAPQTGLQSNAPIIPQGVNEPSTTTSQKSGSVTTEQLQEVLLSAYDPQIPTRAAALRTLSHWIEQREAKALEMQEKLLKIFLENLEHEDTFVYLSAIQGVALLSDVYPEKILPDLLAQYDSSKDKHTPETRMKVGEVLMRIVRALGDMVSKYREPLIHTFLRGVRDPDGAHRASSLANLGELCQRLDFLLGSVVHEVTACLIAVAKTDGEVQVRRAAIHVVVLLLRGLSQKATEVLSAVLKDLYHLLKHVVCLEPDDVAKLHAQLALEELDDIMKNFLFPPQKLEKKIMVLP", "sequence_length": 1094, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a1686c29970dc44f401f54eb1efac0cb81f7053011b5e0caa8e262bc79abcec1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9C0B7.json", "taxon_id": "9606", "uniprot_accession": "Q9C0B7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rna-polymerase-ii-assembly-factor-rtp1-c-terminal-domain-2-ipr019414.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019414", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rna-polymerase-ii-assembly-factor-rtp1-c-terminal-domain-2-ipr019414.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rna-polymerase-ii-assembly-factor-rtp1-c-terminal-ipr019451.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019451", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rna-polymerase-ii-assembly-factor-rtp1-c-terminal-ipr019451.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/rtp1-c1-pf10363.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10363", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rtp1-c1-pf10363.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/rtp1-c2-pf10304.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10304", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rtp1-c2-pf10304.yaml" } ], "pfam_ids": [ "PF10304", "PF10363" ], "protein_name": "Transport and Golgi organization protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MINTAKYFALLESLRFSKALANTANNSGTAEALEINLRILEKYAKLEIGQQLHELCLEYQLTDDHESSIDPDSDRTICYIIRLQHVLHSIMRNINFHSDAKEDLISVAHLKLCIQASQELSYYSLRCQLHEDFYKSPIFCEAQGKIKANFSLMLLSIQFFINLLHIRQYHIANSMELVQRDLLAAIVSLRVQQDSPLLDKAIAYLWQYESKADFFRNILLFKATTLCPTLAQLLHRQLLGKLHLPQGFASLVEALHQNPNVNSSRNAEIVASIVARKGFSQLAQEKMVLQVLEYCKFYLQNADKMCAGVLSLRRLYDLSDTNQKLIKEILFKHWETLCNPEDIINGLILMDHQELCNRILLWQHLFCSSTVACLPSNLLVPYLPLLLQLYDGLPMELPASSQISAIILRCLDNREMKNELPAILQKLFKWEIEKEPPWKCLNPRIIILPSMNTTQIQVKVAHKDHLADHDMGRILPGLLTSSSHHSLTCKVFLSLLGFIAKQINDKSSASVDFISSEAELKDFLHSKYQLKLDLLIALNQMVAHQPLRAQLSQHTKELLHILKDLLVHRSREQDTTDQILLLVLNLLQEILEGSENIQLSEACKELKEQLHLLGTRSSNPLIQQSVKSLLTIIHGAWRPSEAVKIQPFQRARSLIEEKQSHMQVYGIQMMIDLLKKRDPATLAQGQLIIALALTTLKDKESYTFLNCVRLFVSLVHVMESDVLDKLSDEYLSETAHLDYRLVVGEAILKVAQELGPLCFRYKAVLLNCFMYGSRSPVHEFRMSAFANLAQLCRLLAFQVQNFFHELLQLVNSELTTGGYVPSKRAAVLVLAELLNGMENLLDYQEMLLPIYRLLKAIEADESCDPQMRQHAANGLKILNKKCTKLIQSALEEKSLQKQIKVLGIKDDDSPQRRNRHILELN", "sequence_length": 921, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4bf30d22edf3dac106f62fd6c2014ade1e90c06f9e91acbe9775b5f66979f6d1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VJ29.json", "taxon_id": "7227", "uniprot_accession": "Q9VJ29", "uniprot_release": "2026_03" } ], "pfam_id": "PF10363", "short_name": "RTP1_C1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cleaved-adhesin-pf07675.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07675", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cleaved-adhesin-pf07675.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2436-pf10365.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10365", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2436-pf10365.yaml" } ], "pfam_ids": [ "PF01364", "PF03785", "PF07675", "PF08126", "PF10365" ], "protein_name": "Lys-gingipain", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKLLLLIAASLLGVGLYAQSAKIKLDAPTTRTTCTNNSFKQFDASFSFNEVELTKVETKGGTFASVSIPGAFPTGEVGSPEVPAVRKLIAVPVGATPVVRVKSFTEQVYSLNQYGSEKLMPHQPSMSKSDDPEKVPFVYNAAAYARKGFVGQELTQVEMLGTMRGVRIAALTINPVQYDVVANQLKVRNNIEIEVSFQGADEVATQRLYDASFSPYFETAYKQLFNRDVYTDHGDLYNTPVRMLVVAGAKFKEALKPWLTWKAQKGFYLDVHYTDEAEVGTTNASIKAFIHKKYNDGLAASAAPVFLALVGDTDVISGEKGKKTKKVTDLYYSAVDGDYFPEMYTFRMSASSPEELTNIIDKVLMYEKATMPDKSYLEKALLIAGADSYWNPKIGQQTIKYAVQYYYNQDHGYTDVYSYPKAPYTGCYSHLNTGVGFANYTAHGSETSWADPSLTATQVKALTNKDKYFLAIGNCCVTAQFDYPQPCFGEVMTRVKEKGAYAYIGSSPNSYWGEDYYWSVGANAVFGVQPTFEGTSMGSYDATFLEDSYNTVNSIMWAGNLAATHAGNIGNITHIGAHYYWEAYHVLGDGSVMPYRAMPKTNTYTLPASLPQNQASYSIQASAGSYVAISKDGVLYGTGVANASGVATVNMTKQITENGNYDVVITRSNYLPVIKQIQAGEPSPYQPVSNLTATTQGQKVTLKWDAPSAKKAEASREVKRIGDGLFVTIEPANDVRANEAKVVLAADNVWGDNTGYQFLLDADHNTFGSVIPATGPLFTGTASSNLYSANFEYLIPANADPVVTTQNIIVTGQGEVVIPGGVYDYCITNPEPASGKMWIAGDGGNQPARYDDFTFEAGKKYTFTMRRAGMGDGTDMEVEDDSPASYTYTVYRDGTKIQEGLTATTFEEDGVAAGNHEYCVEVKYTAGVSPKVCKDVTVEGSNEFAPVQNLTGSAVGQKVTLKWDAPNGTPNPNPNPNPGTTTLSESFENGIPASWKTIDADGDGHGWKPGNAPGIAGYNSNGCVYSESFGLGGIGVLTPDNYLITPALDLPNGGKLTFWVCAQDANYASEHYAVYASSTGNDASNFTNALLEETITAKGVRSPEAIRGRIQGTWRQKTVDLPAGTKYVAFRHFQSTDMFYIDLDEVEIKANGKRADFTETFESSTHGEAPAEWTTIDADGDGQDWLCLSSGQLDWLTAHGGTNVVASFSWNGMALNPDNYLISKDVTGATKVKYYYAVNDGFPGDHYAVMISKTGTNAGDFTVVFEETPNGINKGGARFGLSTEANGAKPQSVWIERTVDLPAGTKYVAFRHYNCSDLNYILLDDIQFTMGGSPTPTDYTYTVYRDGTKIKEGLTETTFEEDGVATGNHEYCVEVKYTAGVSPKVCVNVTINPTQFNPVKNLKAQPDGGDVVLKWEAPSGKRGELLNEDFEGDAIPTGWTALDADGDGNNWDITLNEFTRGERHVLSPLRASNVAISYSSLLQGQEYLPLTPNNFLITPKVEGAKKITYKVGSPGLPQWSHDHYALCISKSGTAAADFEVIFEETMTYTQGGANLTREKDLPAGTKYVAFRHYNCTDVLGIMIDDVVITGEGEGPSYTYTVYRDGTKIQEGLTETTYRDAGMSAQSHEYCVEVKYAAGVSPKVCVDYIPDGVADVTAQKPYTLTVVGKTITVTCQGEAMIYDMNGRRLAAGRNTVVYTAQGGYYAVMVVVDGKSYVEKLAIK", "sequence_length": 1723, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e92ce129f1b86709c36b5dd578d6f725fa0a568639660110f888ed0ccf493b2d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B2RLK2.json", "taxon_id": "431947", "uniprot_accession": "B2RLK2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porphyromonas gingivalis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cleaved-adhesin-pf07675.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07675", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cleaved-adhesin-pf07675.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2436-pf10365.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10365", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2436-pf10365.yaml" } ], "pfam_ids": [ "PF01364", "PF03785", "PF07675", "PF08126", "PF10365" ], "protein_name": "Lys-gingipain 381", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKLLLLIAASLLGVGLYAQSAKIKLDAPTTRTTCTNNSFKQFDASFSFNEVELTKVETKGGTFASVSIPGAFPTGEVGSPEVPAVRKLIAVPVGATPVVRVKSFTEQVYSLNQYGSEKLMPHQPSMSKSDDPEKVPFVYNAAAYARKGFVGQELTQVEMLGTMRGVRIAALTINPVQYDVVANQLKVRNNIEIEVSFQGADEVATQRLYDASFSPYFETAYKQLFNRDVYTDHGDLYNTPVRMLVVAGAKFKEALKPWLTWKAQKGFYLDVHYTDEAEVGTTNASIKAFIHKKYNDGLAASAAPVFLALVGDTDVISGEKGKKTKKVTDLYYSAVDGDYFPEMYTFRMSASSPEELTNIIDKVLMYEKATMPDKSYLEKALLIAGADSYWNPKIGQQTIKYAVQYYYNQDHGYTDVYSYPKAPYTGCYSHLNTGVGFANYTAHGSETSWADPSLTATQVKALTNKDKYFLAIGNCCVTAQFDYPQPCFGEVMTRVKEKGAYAYIGSSPNSYWGEDYYWSVGANAVFGVQPTFEGTSMGSYDATFLEDSYNTVNSIMWAGNLAATHAGNIGNITHIGAHYYWEAYHVLGDGSVMPYRAMPKTNTYTLPASLPQNQASYSIQASAGSYVAISKDGVLYGTGVANASGVATVNMTKQITENGNYDVVITRSNYLPVIKQIQAGEPSPYQPVSNLTATTQGQKVTLKWDAPSAKKAEASREVKRIGDGLFVTIEPANDVRANEAKVVLAADNVWGDNTGYQFLLDADHNTFGSVIPATGPLFTGTASSNLYSANFEYLIPANADPVVTTQNIIVTGQGEVVIPGGVYDYCITNPEPASGKMWIAGDGGNQPARYDDFTFEAGKKYTFTMRRAGMGDGTDMEVEDDSPASYTYTVYRDGTKIQEGLTATTFEEDGVAAGNHEYCVEVKYTAGVSPKVCKDVTVEGSNEFAPVQNLTGSAVGQKVTLKWDAPNGTPNPNPNPNPGTTTLSESFENGIPASWKTIDADGDGHGWKPGNAPGIAGYNSNGCVYSESFGLGGIGVLTPDNYLITPALDLPNGGKLTFWVCAQDANYASEHYAVYASSTGNDASNFTNALLEETITAKGVRSPEAIRGRIQGTWRQKTVDLPAGTKYVAFRHFQSTDMFYIDLDEVEIKANGKRADFTETFESSTHGEAPAEWTTIDADGDGQDWLCLSSGQLDWLTAHGGTNVVASFSWNGMALNPDNYLISKDVTGATKVKYYYAVNDGFPGDHYAVMISKTGTNAGDFTVVFEETPNGINKGGARFGLSTEANGAKPQSVWIERTVDLPAGTKYVAFRHYNCSDLNYILLDDIQFTMGGSPTPTDYTYTVYRDGTKIKEGLTETTFEEDGVATGNHEYCVEVKYTAGVSPKVCVNVTINPTQFNPVKNLKAQPDGGDVVLKWEAPSGKRGELLNEDFEGDAIPTGWTALDADGDGNNWDITLNEFTRGERHVLSPLRASNVAISYSSLLQGQEYLPLTPNNFLITPKVEGAKKITYKVGSPGLPQWSHDHYALCISKSGTAAADFEVIFEETMTYTQGGANLTREKDLPAGTKYVAFRHYNCTDVLGIMIDDVVITGEGEGPSYTYTVYRDGTKIQEGLTETTYRDAGMSAQSHEYCVEVKYAAGVSPKVCVDYIPDGVADVTAQKPYTLTVVGKTITVTCQGEAMIYDMNGRRLAAGRNTVVYTAQGGYYAVMVVVDGKSYVEKLAIK", "sequence_length": 1723, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e92ce129f1b86709c36b5dd578d6f725fa0a568639660110f888ed0ccf493b2d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P72194.json", "taxon_id": "837", "uniprot_accession": "P72194", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porphyromonas gingivalis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cleaved-adhesin-pf07675.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07675", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cleaved-adhesin-pf07675.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2436-pf10365.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10365", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2436-pf10365.yaml" } ], "pfam_ids": [ "PF01364", "PF03785", "PF07675", "PF08126", "PF10365" ], "protein_name": "Lys-gingipain W83", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKLLLLIAASLLGVGLYAQSAKIKLDAPTTRTTCTNNSFKQFDASFSFNEVELTKVETKGGTFASVSIPGAFPTGEVGSPEVPAVRKLIAVPVGATPVVRVKSFTEQVYSLNQYGSEKLMPHQPSMSKSDDPEKVPFVYNAAAYARKGFVGQELTQVEMLGTMRGVRIAALTINPVQYDVVANQLKVRNNIEIEVSFQGADEVATQRLYDASFSPYFETAYKQLFNRDVYTDHGDLYNTPVRMLVVAGAKFKEALKPWLTWKAQKGFYLDVHYTDEAEVGTTNASIKAFIHKKYNDGLAASAAPVFLALVGDTDVISGEKGKKTKKVTDLYYSAVDGDYFPEMYTFRMSASSPEELTNIIDKVLMYEKATMPDKSYLEKVLLIAGADYSWNSQVGQPTIKYGMQYYYNQEHGYTDVYNYLKAPYTGCYSHLNTGVSFANYTAHGSETAWADPLLTTSQLKALTNKDKYFLAIGNCCITAQFDYVQPCFGEVITRVKEKGAYAYIGSSPNSYWGEDYYWSVGANAVFGVQPTFEGTSMGSYDATFLEDSYNTVNSIMWAGNLAATHAGNIGNITHIGAHYYWEAYHVLGDGSVMPYRAMPKTNTYTLPASLPQNQASYSIQASAGSYVAISKDGVLYGTGVANASGVATVSMTKQITENGNYDVVITRSNYLPVIKQIQVGEPSPYQPVSNLTATTQGQKVTLKWEAPSAKKAEGSREVKRIGDGLFVTIEPANDVRANEAKVVLAADNVWGDNTGYQFLLDADHNTFGSVIPATGPLFTGTASSNLYSANFEYLVPANADPVVTTQNIIVTGQGEVVIPGGVYDYCITNPEPASGKMWIAGDGGNQPARYDDFTFEAGKKYTFTMRRAGMGDGTDMEVEDDSPASYTYTVYRDGTKIKEGLTATTFEEDGVAAGNHEYCVEVKYTAGVSPKVCKDVTVEGSNEFAPVQNLTGSSVGQKVTLKWDAPNGTPNPNPNPNPNPGTTLSESFENGIPASWKTIDADGDGHGWKPGNAPGIAGYNSNGCVYSESFGLGGIGVLTPDNYLITPALDLPNGGKLTFWVCAQDANYASEHYAVYASSTGNDASNFTNALLEETITAKGVRSPKAIRGRIQGTWRQKTVDLPAGTKYVAFRHFQSTDMFYIDLDEVEIKANGKRADFTETFESSTHGEAPAEWTTIDADGDGQGWLCLSSGQLDWLTAHGGSNVVSSFSWNGMALNPDNYLISKDVTGATKVKYYYAVNDGFPGDHYAVMISKTGTNAGDFTVVFEETPNGINKGGARFGLSTEANGAKPQSVWIERTVDLPAGTKYVAFRHYNCSDLNYILLDDIQFTMGGSPTPTDYTYTVYRDGTKIKEGLTETTFEEDGVATGNHEYCVEVKYTAGVSPKKCVDVTVNSTQFNPVQNLTAEQAPNSMDAILKWNAPASKRAEVLNEDFENGIPASWKTIDADGDGNNWTTTPPPGGSSFAGHNSAICVSSASHINFEGPQNPDNYLVTPELSLPGGGTLTFWVCAQDANYASEHYAVYASSTGNDASNFANALLEEVLTAKTVVTAPEAIRGTRAQGTWYQKTVQLPAGTKYVAFRHFGCTDFFWINLDDVVITSGNAPSYTYTIYRNNTQIASGVTETTYRDPDLATGFYTYGVKVVYPNGESAIETATLNITSLADVTAQKPYTLTVVGKTITVTCQGEAMIYDMNGRRLAAGRNTVVYTAQGGHYAVMVVVDGKSYVEKLAVK", "sequence_length": 1732, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "89e1d6d92343c964e1f33ade4170747019a152acbe53577b0b521fe110b60f76", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q51817.json", "taxon_id": "837", "uniprot_accession": "Q51817", "uniprot_release": "2026_03" } ], "pfam_id": "PF10365", "short_name": "DUF2436", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10370", "short_name": "Rv2993c-like_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/5-3-dna-helicase-zgrf1-like-n-terminal-domain-ipr018838.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/5-3-dna-helicase-zgrf1-like-n-terminal-domain-ipr018838.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zgrf1-like-n-pf10382.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10382", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zgrf1-like-n-pf10382.yaml" } ], "pfam_ids": [ "PF10382" ], "protein_name": "Uncharacterized protein YGR042W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSHIVEYECQYTDQLYKKRKIWHDGRLKYFQLNNRFMLYTEKDNVLLASEFKINSKELKAILNPEGFDIEEHRIFSQFLVIISNIIEEYDRDIQVAATHVRAYPSNLSVQKQRPLISDNAPSLNHISTAREVHSNIKVTTPNRKQTEDNATKGGFNISKLTLKVNKPFKKPKRILSTNVVNESNRPSIRSQKIQEVTPQLHETNTSTKVQTAGKVALNNDNIAQGNYATITEEAKVRDGSDRKKDMANLSKSGKRRVGGIRRIVHEPLGI", "sequence_length": 271, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f20f62efee1c448cf171ee8821a5dd3d6b87a9d05dc8bee7c9312edb4e76fbab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53227.json", "taxon_id": "559292", "uniprot_accession": "P53227", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/transcription-termination-site-sequence-specific-dna-binding-go0001147.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0001147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/transcription-termination-site-sequence-specific-dna-binding-go0001147.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/5-3-dna-helicase-zgrf1-like-n-terminal-domain-ipr018838.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/5-3-dna-helicase-zgrf1-like-n-terminal-domain-ipr018838.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zgrf1-like-n-pf10382.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10382", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zgrf1-like-n-pf10382.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q0VGT4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06839", "PF10382", "PF13086", "PF13087" ], "protein_name": "5'-3' DNA helicase ZGRF1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d9fd3a34124bcb07cc34b4cc89e5c4f2e12d130e3b5375575e8ee7cd45ea162c", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MECQEFIVLYTHQKMKKSKVWQDGVLKITHLGNKAILYDDKGACLESLFLKCLEVKPGDDLESERYLITVEEAKAVGSRAVEPDGSREALESGSRTLVSSSRSLGCQPSGLKRKATGFQRPYKMPKKVTITENSEPAASLGDENPGPPGPRLLPTFSSTLPLFPTVGQKDLTPVSTDNQSPITFSNRERSDTPLSLPSSYFKINTNTLGKEDKLCFPVSSETKHSDSLLASEPMRRNGLDSHCPGVSQNVRSKAQILALLKSSSTNRKDLHGEIPGHFPKIEPQGCLNIISKPEEDYAETQSIGNLRCEQQSENPTRTTSRWARYLPSQRSPPCSAADENDTEDKPEAQEDVNIFNLSELLQKKSELFETCSKKGELHSEDKPVDNTCQYWNQEDNLAPSFCKNSSVLVSCSSKENASLLSESDIQYSSKVPVNQHEKVWTREGSQGADADAALEPEYRPVSPLPEIGHKQTEVEASLSTSSRISDDIADMGSKSNADREDLKTVHKAVQPFLEVSFNLSNFETSDTDEASQEDSRLSQDSERWEKEAVLTDDSCVQKSCEDIGCREIVGKLPLLSSTDDEPKEALPADGTLLSEFCDRTCVGFNSGPHGDVKTGKALEGQCHSDTGSSLDSSLEWSEDVAGDSREDASQSIQGNAINCGGVSPSKKPRGVNRSLYSPYLLTAVTDPAPENSDLLSEARKSPAIEVSRALLECPCEHRASQQPVEFQGHQVKGSATSGVMVRGHSLQRGCTQFPDSIDYENFLTDTCVWTPGLPSTYGQTDFLQVISPEQKIPALSPAPTFSFNTRNEDTVLELSEESLKTRTLPGLKTIGFQDSKNLQRFPFLSGASAPFATLPADDGPAVLDPCSFMIDDDAREPSGSSMLNLCEESGLSFDLGLEGQGGTPGGVSLLPKSSTQSKWLKYQNPPQCNSTAPNRLASEVTEGLFAEAVSGLHFSHTSESESSVDPVRLQMIKGLLHQQQQDLVSRKQAFSLTLNQTCKTQEHETVLGSSASKNCRAKDLQEINNSDLCFPNGQKIISAYLPQRQVHIPAVFQSPAHYRQVFTASIIEHLNILLFELAQRLYKALSKVDISFYTSSKGETMRSGKNNSPSCHHNQPAKLVMVKKEGPNKGRLFYTCDKSKDNQCKFFKWLEEVTPGQLPQNTSQSTMVFNDIKSIGSYLRSQKVPVYEECQLLLRRGFDFQRKQCGKLKKLTTVNPDFYSETKSKIYLKLSRRESSSVYSKGDLWVISKTLDFELDTFIACSAFFGPSSVNEVELLPLKGYFPSNWPTNITVHALLVCNASTELTTLQNIQDYFNPAALPLMPYLLAMSQSATVSSKNISKRKFIPPAITSIKTKTELHLGATLQLARELINVHRLNKDQATALIQIAQMMASQGSDEDALEPFGHSLPITVIHGVFGAGKSYLLAVVILFLVELFEKCDSGTVGNARPWKVLVSSSTNVAVDRVLLGLLSLGFEKFIRVGSVRKIAKPVLPYSLHAGSDNESEQLKELNALLKEELTPIERVYVRKSIEQHKLGTNRVLLKQVRVVGVTCAACAFPCLNDLKFPVVVLDECSQMTEPASLLPIARFQCEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPVLLRTQYRCHPAISAIANDLFYEGSLVNGISERERSPVLEWLPTLCFYNVTGAEQVERENSFVNVAEATFTLKLIQSLMASGVESCMIGVITLYKSQMYKICNLLSAVDVGHPDVKAVQVSTVDAFQGAEKEITILSCVRTRQVGFIDSEKRMNVALTRGRRHLLIVGSLSCLRKNRLWGRVIQHCEGREDGLQHASQCEPQLDHLLKDYLEKQAEEKQKKKEKEKSKDKSH", "sequence_length": 1863, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d9fd3a34124bcb07cc34b4cc89e5c4f2e12d130e3b5375575e8ee7cd45ea162c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q0VGT4.json", "taxon_id": "10090", "uniprot_accession": "Q0VGT4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/5-3-dna-helicase-zgrf1-like-n-terminal-domain-ipr018838.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/5-3-dna-helicase-zgrf1-like-n-terminal-domain-ipr018838.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aaa-11-pf13086.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13086", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aaa-11-pf13086.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aaa-12-pf13087.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aaa-12-pf13087.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zgrf1-like-n-pf10382.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10382", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zgrf1-like-n-pf10382.yaml" } ], "pfam_ids": [ "PF06839", "PF10382", "PF13086", "PF13087" ], "protein_name": "5'-3' DNA helicase ZGRF1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESQEFIVLYTHQKMKKSKVWQDGILKITHLGNKAILYDDKGACLESLFLKCLEVKPGDDLESDRYLITVEEVKVAGAIGIVKQNVNKEAPELNSRTFISSGRSLGCQPSGLKRKFTGFQGPRQVPKKMVIMESGESAASHEAKKTGPTIFSPFCSMPPLFPTVGKKDVNNILADPENIVTYKNRERNAMDFSSVFSPSFQINPEVLCEENYFCSPVNSGNKLSDSLLTNEPVKRDSLASHYSGVSQNIRSKAQILALLKSESSSSCEELNSEMTEHFPQKQPQGSLKIATKPKYLIQQEECAEMKSTENLYYQHQSENTMRNKSRWAMYLSSQSSPIHSSTVDGNDTERKPKAQEDDVNSNLKDLSLQKIIQFVETYAEERKKYNVDQSVGNNDPSWNQEVKLEIPSFNESSSLQVTCSSAENDGILSESDIQEDNKIPFNQNDKGCIKGSVLIKENAQEVNTCGTLEKEYEQSESSLPELKHLQIESSNNSRISDDITDMISESKMDNESLNSIHESLSNVTQPFLEVTFNLNNFETSDTEEESQESNKISQDSESWVKDILVNDGNSCFQKRSENTNCEEIEGEHLPFLTSVSDKPTVTFPVKETLPSQFCDKTYVGFDMGICKTENTGKEIEEYSDTLSNFESFKWTDAVYGDNKEDANKPIQEVRINYDFALPPNKSKGINMNLHIPHIQNQIAENSNLFSEDAQPQPFILGSDLDKNDEHVLPSTSSSDNSVQLLNTNQNHYECIALDKSNTHISNSLFYPLGKKHLISKDTEAHISEPEDLGKIRSPPPDHVEVETAREGKQYWNPRNSSELSGLVNTISILKSLCEHSTALDSLEILKKKNTVFQQGTQQTYEPDSPPEVRKPFITVVSPKSPHLHKDSQQILKEDEVELSEPLQSVQFSSSGSKEETAFQAVIPKQIERKTCDPKPVEFQGHQVKGSATSGVMVRGHSSQLGCSQFPDSTEYENFMTETPELPSTCMQIDFLQVTSPEENISTLSPVSTFSLNSRDEDFMVEFSETSLKARTLPDDLHFLNLEGMKKSRSLENENLQRLSLLSRTQVPLITLPRTDGPPDLDSHSYMINSNTYESSGSPMLNLCEKSAVLSFSIEPEDQNETFFSEESREVNPGDVSLNNISTQSKWLKYQNTSQCNVATPNRVDKRITDGFFAEAVSGMHFRDTSERQSDAVNESSLDSVHLQMIKGMLYQQRQDFSSQDSVSRKKVLSLNLKQTSKTEEIKNVLGGSTCYNYSVKDLQEISGSELCFPSGQKIKSAYLPQRQIHIPAVFQSPAHYKQTFTSCLIEHLNILLFGLAQNLQKALSKVDISFYTSLKGEKLKNAENNVPSCHHSQPAKLVMVKKEGPNKGRLFYTCDGPKADRCKFFKWLEDVTPGYSTQEGARPGMVLSDIKSIGLYLRSQKIPLYEECQLLVRKGFDFQRKQYGKLKKFTTVNPEFYNEPKTKLYLKLSRKERSSAYSKNDLWVVSKTLDFELDTFIACSAFFGPSSINEIEILPLKGYFPSNWPTNMVVHALLVCNASTELTTLKNIQDYFNPATLPLTQYLLTTSSPTIVSNKRVSKRKFIPPAFTNVSTKFELLSLGATLKLASELIQVHKLNKDQATALIQIAQMMASHESIEEVKELQTHTFPITIIHGVFGAGKSYLLAVVILFFVQLFEKSEAPTIGNARPWKLLISSSTNVAVDRVLLGLLSLGFENFIRVGSVRKIAKPILPYSLHAGSENESEQLKELHALMKEDLTPTERVYVRKSIEQHKLGTNRTLLKQVRVVGVTCAACPFPCMNDLKFPVVVLDECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWLPTLCFYNVKGLEQIERDNSFHNVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTRQVGFIDSEKRMNVALTRGKRHLLIVGNLACLRKNQLWGRVIQHCEGREDGLQHANQYEPQLNHLLKDYFEKQVEEKQKKKSEKEKSKDKSHS", "sequence_length": 2104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bcca471ca12eb3136c7764de69d8f45d4c64f12c0697025ed83dc34251549ef6", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q86YA3.json", "taxon_id": "9606", "uniprot_accession": "Q86YA3", "uniprot_release": "2026_03" } ], "pfam_id": "PF10382", "short_name": "ZGRF1-like_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10386", "short_name": "DUF2441", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10387", "short_name": "DUF2442", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Helicobacter pylori (strain ATCC 700392 / 26695)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2443-pf10398.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2443-pf10398.yaml" } ], "pfam_ids": [ "PF10398" ], "protein_name": "Uncharacterized protein HP_1531", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFEKIRKILADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKELINALNKIKKGLLVF", "sequence_length": 79, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "98abeaed841cbaa20c6c55d982eea71ae2dd58a7306223ad75ecb12b6670702d", "sequence_version": 1, "source_url": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-10-250-1900-6-10-250-1900.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q53HL2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10444", "PF10512" ], "protein_name": "Borealin", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e13954c013ec7d11be5eb0342712793a24a07e35d6932f484d7a475db3afbb76", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAPRKGSSRVAKTNSLRRRKLASFLKDFDREVEIRIKQIESDRQNLLKEVDNLYNIEILRLPKALREMNWLDYFALGGNKQALEEAATADLDITEINKLTAEAIQTPLKSAKTRKVIQVDEMIVEEEEEEENERKNLQTARVKRCPPSKKRTQSIQGKGKGKRSSRANTVTPAVGRLEVSMVKPTPGLTPRFDSRVFKTPGLRTPAAGERIYNISGNGSPLADSKEIFLTVPVGGGESLRLLASDLQRHSIAQLDPEALGNIKKLSNRLAQICSSIRTHK", "sequence_length": 280, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e13954c013ec7d11be5eb0342712793a24a07e35d6932f484d7a475db3afbb76", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q53HL2.json", "taxon_id": "9606", "uniprot_accession": "Q53HL2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/borealin-c-terminal-ipr046466.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046466", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/borealin-c-terminal-ipr046466.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/borealin-n-terminal-ipr018851.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018851", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/borealin-n-terminal-ipr018851.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/borealin-pf10512.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/borealin-pf10512.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nbl1-borealin-n-pf10444.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10444", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nbl1-borealin-n-pf10444.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/6-10-140-560-6-10-140-560.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.10.140.560", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-10-140-560-6-10-140-560.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/6-10-250-1900-6-10-250-1900.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.10.250.1900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-10-250-1900-6-10-250-1900.yaml" } ], "pfam_ids": [ "PF10444", "PF10512" ], "protein_name": "Borealin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPKKRSSRGTRTNTLRSRKLASFLKDFDREVQVRTKQIESDRQTLLKEVENLYNIEILRLPKALQGMKWLDYFALGGNKQALEEAAKADRDITEINNLTAEAIQTPLKSVKKRKVIEVEESIKEEEEEEEEGGGGGGRTKKSHKNLRSAKVKRCLPSKKRTQSIQGRGRSKRLSHDFVTPAMSRLEPSLVKPTPGMTPRFDSRVFKTPGLRTPAAKEQVYNISINGSPLADSKEISLSVPIGGGASLRLLASDLQRIDIAQLNPEALGNIRKLSSRLAQICSSIRTGR", "sequence_length": 289, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fd3691e06e066eb4d570ddad69b79ed07f6fd4b8692f8a5b354b0c8bef818358", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BHX3.json", "taxon_id": "10090", "uniprot_accession": "Q8BHX3", "uniprot_release": "2026_03" } ], "pfam_id": "PF10444", "short_name": "Nbl1_Borealin_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2456-pf10445.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10445", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2456-pf10445.yaml" } ], "pfam_ids": [ "PF10445" ], "protein_name": "Uncharacterized protein C594.02c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPAVFTSDYWKKYFSNKKKPTVKNTSDIDLLHINRGRQPFDEGLSINEDSFFYRHNIHVPRIVYLIIVACGSFIITGGIEFAIAYGMYKKTETSVRLWRLPDTLSGDAAVTNFVQAIVTYWVESILVQGDLRSGLVKPIYFGWWPENFLLREVLRAKPRYHFKFIVFRWMEWLVFVGLRGLVWSVPLWFLFWPATVGILCAPGRHEGNDYYFNNYPAPQVFKLIFGGGEGFVLTPWIAFLHMYMYGHYLHVAKNQKSLPKTSDLEQQRGTSSSQPSENDANITALPKPEPKMYENSDLTPARTPVTPAPLEKPVNLAPEVVEPTNAAASPLQLNAPKLTDVDDSALAYDPTKVQDGEDRFVHNDVPLENAENPSRFVHSDAPIDMTHTTTVISEAQNLPSTLLPQDGNAVHHDTDAPSLSNVRKSVDSPRVPPSFSDDAVSSFSLVTAPSINNVGGSTAPSVNNQEREYDYDDTSSRSSTLTERPVVH", "sequence_length": 489, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f4319ccd1d9c4b5497b8e0e67eaa1e0df0f42ff0c0bb27559e42e56c4d8a343", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O74505.json", "taxon_id": "284812", "uniprot_accession": "O74505", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2456-pf10445.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10445", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2456-pf10445.yaml" } ], "pfam_ids": [ "PF10445" ], "protein_name": "Uncharacterized protein YHL026C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSSEPAPATPTGFRNSIWFIIFYLFVIQALGSAIISGGIEFAIAYAMYHSRVDLITLWAFPHTISGDCALSLFIQVGLTWASEEILVGFDDYKRPVFRLNKWITKPSPLKTESNEEIPPPKKRFIVDYFESKDNVVAKQNTLYHKHNWLFGYLEVNRGIIPKGKEATLKGFLTSQFIHDSTQSKFMNFIEWFVQKFIRSMILAIAMFIVIWPVTMGILAGIGHKVGSHDYYFNDYPLPQVMKLIYAVVIAFVCTPVAIIVIVLRNQFHEELYYEGLANGTLQQDQEVCSTGNRSSGSTDQDISTTKQQSQEAVA", "sequence_length": 315, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3363c6f70ab0813624f0d2af034a0627a1563c5250da630b2f0cd87f7fbe7b5e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P38740.json", "taxon_id": "559292", "uniprot_accession": "P38740", "uniprot_release": "2026_03" } ], "pfam_id": "PF10445", "short_name": "DUF2456", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2457-pf10446.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10446", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2457-pf10446.yaml" } ], "pfam_ids": [ "PF10446" ], "protein_name": "Uncharacterized protein C1259.08", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGLLSILLHYKGNGDLATTDIPSHEKIPSAKRTAVQFCIGPTHEQSPRMSTVSQGRVTFAVLPTKPKDEVTSMKANGSRQSSCIVSNARKRQSVHCLSRSPIPSTRLKENDSRLCSPLASPTGGLKRPAKVSFALANTPSRKGNLVPQSPRRTIATTCKGVLEDVLKKDNELKFNDSDEEDEVDDEEIESFNSFSRKMQTISNSRYRGSPKPNIEKQSCSSESDRVSQISDDEEDEEGSADEEDEEDSDVELSESSLSDDEDSPLRCPSTPVQTAAAPNESQIPDDTDFVPGTFDEDQPACLAFACSLTHANSKRSIMLPQDIDPTFPDSEPEDDGHASSTVGSLSKEEARFKAKAKWNYKSSFSAHVSSEVLRNSKSPPLDIARKAVGAHRV", "sequence_length": 394, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "245525c0b557ea074830e8510975e28491c31fe171fab13e2b19e98c55e42f40", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O94708.json", "taxon_id": "284812", "uniprot_accession": "O94708", "uniprot_release": "2026_03" } ], "pfam_id": "PF10446", "short_name": "DUF2457", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2458-pf10454.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10454", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2458-pf10454.yaml" } ], "pfam_ids": [ "PF10454" ], "protein_name": "Uncharacterized protein C557.02c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKKIADLLQELQSSSNVTSNQLENVDKSSIPLSKARKPSDFELNNSIEDAEKIKTYPAALRYIFALNSRHPEKLQKLRKMKAMQERQERNWSLERQRLVQHFESKTKLQEILKPLSSDPKLKQPSNCLNDQTNNDSAQTLDDNRALQEFDEQVVQLTNRMYKEQLAILADLKIPLFLSVNNDEELSEDQKRLLQLLQDLLGA", "sequence_length": 203, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2591aa50964397a38179a742e73ce7c76c0da13fa3d1720d2705be621204f60a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9USS4.json", "taxon_id": "284812", "uniprot_accession": "Q9USS4", "uniprot_release": "2026_03" } ], "pfam_id": "PF10454", "short_name": "DUF2458", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/syndetin-c-pf10474.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10474", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/syndetin-c-pf10474.yaml" } ], "pfam_ids": [ "PF10474", "PF10475" ], "protein_name": "Syndetin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQKIKSLMTRQGLKSPPESLNDLGAFESLRVPGKEEFRELREQPSDPQAEQELINSIEQVYFSADPFDIVKYELEKLPPVLNLQELEEYRDKLKQQQAAVSKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNSRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKNFDVNHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNTDTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDSEETAAASEGSNVMSTEETNFDRGYVKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIVSRLMQVGEEFCGSKSEVLQESIRKQSINYFKNHHRIRLDELRMFLENETWELCPVKSNFSILQLHEFKFLEQSRSPSVSPSKQPSATSSKPVTLFEQYCSGGNPFEIQADHKDEETEDVLASNGYESDEQEKSAYQDYDSDSDVPEELKRDYVDEQTGDVPVKSVSRETLKSRKKSDYSLNKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSLESTGLGLSSSRLRTTLNRIQESLIDLEGSADPTATLTAAEERKEKVPSPHLNQLVILTSGDTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPIYWIVAGKAIDYEQMLLLMTNVKWDVKEIMSQHNVYVDALLKEFEQFNKRLNEVSKRVRIPLPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDKEFVEIYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDIDRPKR", "sequence_length": 964, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "12ffe08b393d9b89947b6260c0d69622b0f7cc26b3f800c6ab5376e39d1bbd8c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F1LSG8.json", "taxon_id": "10116", "uniprot_accession": "F1LSG8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/syndetin-c-terminal-ipr019514.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019514", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/syndetin-c-terminal-ipr019514.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-54-n-terminal-ipr019515.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019515", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-54-n-terminal-ipr019515.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/syndetin-c-pf10474.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10474", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/syndetin-c-pf10474.yaml" } ], "pfam_ids": [ "PF10474", "PF10475" ], "protein_name": "Syndetin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQKIKSLMTRQGLKSPPESLNDLGAFESLRVPGKEEFRELREQPSDPQAEQELINSIEQVYFSADPFDIVKYELEKLPPVLNLQELEEYRDKLKQQQSAVSKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDIRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNTDTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDNEETAAAAEGSNVMSTEEATFDRGYVKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIVSRLMQVGEEFCGSKSEVLQESIRKQSVNYFKNHHRIRLDELRMFLENETWELCPVKSNFSILQLHEFKFLEQSRSPSVSPSKQPSATSSKPVTLFEQYCSGGNPFEIQADHKDEETEDVLASNGYESDEQEKSAYQDYDSDSDVPEELKRDYVDEQTGDVPVKSVSRETLKSRKKSDYSLNKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSLESTGLGLSSSRLKTTLNRIQESLIDLEGSADPTATLTAAEERKEKVPSPHLNQLVILTSGDTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPIYWIVAGKAIDYEQMLLLMMNVKWDVKEIMSQHNIYVDALLKEFEQFNKRLNEVSKRVRIPLPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDEIDRPKR", "sequence_length": 964, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79f99245e535d6f224a46be1042b1e29eb7789150e87813c6d7af26a978b2c2a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CI71.json", "taxon_id": "10090", "uniprot_accession": "Q8CI71", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/syndetin-c-terminal-ipr019514.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019514", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/syndetin-c-terminal-ipr019514.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-54-n-terminal-ipr019515.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019515", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-54-n-terminal-ipr019515.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/syndetin-c-pf10474.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10474", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/syndetin-c-pf10474.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/vps54-n-pf10475.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10475", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/vps54-n-pf10475.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q96JG6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10474", "PF10475" ], "protein_name": "Syndetin", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "68d33438fcb65148a1b23e072b26c908b7dbc71366daebc5d8a506631317ea7b", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQKIKSLMTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQVYFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNTDTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDNEDTASASEGSNMIGTEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIISRLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFSILQLHEFKFMEQSRSPSVSPSKQPVSTSSKTVTLFEQYCSGGNPFEIQANHKDEETEDVLASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDGPVKSVSRETLKSRKKSDYSLNKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSLESTGLGLSSSRLRTTLNRIQESLIDLEVSADPTATLTAAEERKEKVPSPHLSHLVVLTSGDTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPIYWIVAGKALDYEQMLLLMANVKWDVKEIMSQHNIYVDALLKEFEQFNRRLNEVSKRVRIPLPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDIDRPKR", "sequence_length": 964, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "68d33438fcb65148a1b23e072b26c908b7dbc71366daebc5d8a506631317ea7b", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q96JG6.json", "taxon_id": "9606", "uniprot_accession": "Q96JG6", "uniprot_release": "2026_03" } ], "pfam_id": "PF10474", "short_name": "Syndetin_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/syndetin-c-pf10474.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10474", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/syndetin-c-pf10474.yaml" } ], "pfam_ids": [ "PF10474", "PF10475" ], "protein_name": "Syndetin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQKIKSLMTRQGLKSPPESLNDLGAFESLRVPGKEEFRELREQPSDPQAEQELINSIEQVYFSADPFDIVKYELEKLPPVLNLQELEEYRDKLKQQQAAVSKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNSRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKNFDVNHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNTDTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDSEETAAASEGSNVMSTEETNFDRGYVKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIVSRLMQVGEEFCGSKSEVLQESIRKQSINYFKNHHRIRLDELRMFLENETWELCPVKSNFSILQLHEFKFLEQSRSPSVSPSKQPSATSSKPVTLFEQYCSGGNPFEIQADHKDEETEDVLASNGYESDEQEKSAYQDYDSDSDVPEELKRDYVDEQTGDVPVKSVSRETLKSRKKSDYSLNKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSLESTGLGLSSSRLRTTLNRIQESLIDLEGSADPTATLTAAEERKEKVPSPHLNQLVILTSGDTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPIYWIVAGKAIDYEQMLLLMTNVKWDVKEIMSQHNVYVDALLKEFEQFNKRLNEVSKRVRIPLPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDKEFVEIYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDIDRPKR", "sequence_length": 964, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "12ffe08b393d9b89947b6260c0d69622b0f7cc26b3f800c6ab5376e39d1bbd8c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F1LSG8.json", "taxon_id": "10116", "uniprot_accession": "F1LSG8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-54-c-terminal-ipr012501.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012501", "section": "canonical_examples", "url": 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"qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10475", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/vps54-n-pf10475.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-1280-130-1-20-1280-130.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1280.130", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-1280-130-1-20-1280-130.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/6-10-250-860-6-10-250-860.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.10.250.860", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-10-250-860-6-10-250-860.yaml" } ], "pfam_ids": [ "PF07928", "PF10475" ], "protein_name": "Vacuolar protein sorting-associated protein 54", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATTRSAGGAATSVDTGPAAGNSGIRKLSTASVGGIAGGVAPSWQSCYYCTREHFKSISDFVNHLRNRHCTREGGSFVCRYGFNGVCASLPLDGVSDRDYDAHVAKYHVNQHTREMPPEWGVYSAAQNLPAVLNDPSRGKQSNLFTKKWGEHFVERSHVPPSPRLPDITHADFTVYLGSIGKRYRWHERRQQQLERDKPLENGAQGAPGPGTGGQTPTHLSSVPEIFLKSQLQLHHPATFKQVFPNYMQTSASSPESHQQTGRQLQEQLSHYLDMVEVKIAQQVSQKSAAFFHAMTTQHAILAEMEQAADQVRQLRAALAELHSHSVVDSFKVLRFAQRRQHYNLTLDKLRLMATVHKTQPMLQLLLGTQDYVAALDLIGTTQEILSAELLGIHCFKHLPMQLSEMEKLIDKMLTTEFERYAAADLNRPLTDALRETDSVCAEEDKLVAIVMGLLRKQNFSFVQAYQQEAIATIRAIIKQLLIEVLARSDSDQEISLTGHGEQALELTLPEWIALLQRSSQALVSILERIKTVVGIMQQTADAAVGAQDAVNLIDSEAFLSPGHHEQLKNQLQQLLQAVCHYCHERCANIVSPQSLERSSASEQELFQLSEIVDHFGETTRSICGVASVPLQLALKVQASRYAQRFHSERKQKLSLLLDQERWRQVDIPHEFQRIIERMAAGDYAKPEMGNLISNGAGNPVLLVEGKQPYTLVSASLMLIRMLYEYGCSAHRLPLLASYHARNVVDLLRCFNSRSCQLIIGAGAMRVAGLKTITSTNLALVSRALQLVLWLLPKLKEHFQAMSGYETIERDYQGHIKEIENKIHGIVSERLAAQLDAWEARPPIPSQTFRHISRHLVKLHEAIAGVLPEAQIHEIYGVVHRNFKDKLREQLLKLNVNNNGGPQHGVVTSELTFYMETLRTLKALPAEQLDNGILEEIWLY", "sequence_length": 940, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3c32a9f1ab4515c5df8e48a5b268ea9bb55412788aff77ebdec5c8185f23d9c4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VLC0.json", "taxon_id": "7227", "uniprot_accession": "Q9VLC0", "uniprot_release": "2026_03" } ], "pfam_id": "PF10475", "short_name": "Vps54_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ima1-n-terminal-domain-ipr018617.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018617", "section": "canonical_examples", "url": 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"data/traits/sequence/family/pfam/duf2448-pf10476.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10476", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2448-pf10476.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ima1-n-pf09779.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09779", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ima1-n-pf09779.yaml" } ], "pfam_ids": [ "PF09779", "PF10476" ], "protein_name": "Transmembrane protein 201", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/1-phosphatidylinositol-3-kinase-regulator-activity-go0046935.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0046935", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/1-phosphatidylinositol-3-kinase-regulator-activity-go0046935.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-natural-killer-cell-mediated-cytotoxicity-go0042269.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042269", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-natural-killer-cell-mediated-cytotoxicity-go0042269.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pi3k-1b-p101-pf10486.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pi3k-1b-p101-pf10486.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5UE93", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10486" ], "protein_name": "Phosphoinositide 3-kinase regulatory subunit 6", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a8c8e205d5448303c68016232489a83a873ef605c2efd4421632e7c08f5c5dbe", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"taxon_id": "9606", "uniprot_accession": "Q5UE93", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/phosphatidylinositol-3-kinase-complex-class-ib-go0005944.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0005944", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/phosphatidylinositol-3-kinase-complex-class-ib-go0005944.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/1-phosphatidylinositol-3-kinase-regulator-activity-go0046935.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0046935", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/1-phosphatidylinositol-3-kinase-regulator-activity-go0046935.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pi3k-1b-p101-pf10486.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pi3k-1b-p101-pf10486.yaml" } ], "pfam_ids": [ "PF10486" ], "protein_name": "Phosphoinositide 3-kinase regulatory subunit 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQPGATTCTEDRIQHALERCLHGLSLSRRSTSWSAGLCLNCWSLQELVSRDPGHFLILLEQILQKTREVQEKGTYDLLTPLALLFYSTVLCTPHFPPDSDLLLKAASTYHRFLTWPVPYCSICQELLTFIDAELKAPGISYQRLVRAEQGLPIRSHRSSTVTVLLLNPVEVQAEFLAVANKLSTPGHSPHSAYTTLLLHAFQATFGAHCDVPGLHCRLQAKTLAELEDIFTETAEAQELASGIGDAAEARRWLRTKLQAVGEKAGFPGVLDTAKPGKLHTIPIPVARCYTYSWSQDSFDILQEILLKEQELLQPGILGDDEEEEEEEEEVEEDLETDGHCAERDSLLSTSSLASHDSTLSLASSQASGPALSRHLLTSFVSGLSDGMDSGYVEDSEESSSEWPWRRGSQERRGHRRPGQKFIRIYKLFKSTSQLVLRRDSRSLEGSSDTALPLRRAGSLCSPLDEPVSPPSRAQRSRSLPQPKLGTQLPSWLLAPASRPQRRRPFLSGDEDPKASTLRVVVFGSDRISGKVARAYSNLRRLENNRPLLTRFFKLQFFYVPVKRSHGTSPGACPPPRSQTPSPPTDSPRHASPGELGTTPWEESTNDISHYLGMLDPWYERNVLGLMHLPPEVLCQQSLKAEAQALEGSPTQLPILADMLLYYCRFAARPVLLQVYQTELTFITGEKTTEIFIHSLELGHSAATRAIKASGPGSKRLGIDGDREAVPLTLQIIYSKGAISGRSRWSNLEKVCTSVNLNKACRKQEELDSSMEALTLNLTEVVKRQNSKSKKGFNQISTSQIKVDKVQIIGSNSCPFAVCLDQDERKILQSVVRCEVSPCYKPEKSDLSSPPQTPPDLPAQAAPDLCSLLCLPIMTFSGALP", "sequence_length": 880, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0cd9d68e7d042f8825c5efbb638a1b3e7ef0070461c43fa9bc32b6354dd0c0f1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WYR1.json", "taxon_id": "9606", "uniprot_accession": "Q8WYR1", "uniprot_release": "2026_03" } ], "pfam_id": "PF10486", "short_name": "PI3K_1B_p101", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2452-pf10504.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2452-pf10504.yaml" } ], "pfam_ids": [ "PF10504" ], "protein_name": "Uncharacterized protein C1orf50 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDRSVSLPHQPNKTTTVTLVETSSNPSGMVLVSPYQTNRVGDPMDLVSLAQQVQKGDEFIRANACNRLTVIADQIRYLQEQARKVLEDARKDAELHHAACNVVKKPGNMYYLYMRESGQRYFSILSPREWGASCPHKFLGGYKLQHDMSWTPQEDVEKRDAEIGIMDKLLNRQTALPACTEPNFEGLSQ", "sequence_length": 189, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1b56da3d9796ed63bc76e287d7e0a91b2a8895c440c6dba8d6720df236766d00", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q502G5.json", "taxon_id": "7955", "uniprot_accession": "Q502G5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2452-pf10504.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2452-pf10504.yaml" } ], "pfam_ids": [ "PF10504" ], "protein_name": "Uncharacterized protein C1orf50 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADPGVPGRYESGTGNLGVKEAAGPGGALVELTPTPGGLALVSPYHTHRVGDPLDLVALAEQVQKADEFIRANATNKLTVIAEQIQHLQEQARKVLEDARRDADLHHAACNMVKKPGNIYYLYQRESGQQYFSIISPEEWGTGCPHDFLGAYKLQHDMSWTPYEDVEKQDAKIGMMDKLLSQPMALPPCTEPTFQGLPH", "sequence_length": 199, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9a73f4ec927b916b62ce286893a2f4d3799bbd549e729b43044edd211fdb106b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5EBG8.json", "taxon_id": "10090", "uniprot_accession": "Q5EBG8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2452-pf10504.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2452-pf10504.yaml" } ], "pfam_ids": [ "PF10504" ], "protein_name": "Uncharacterized protein C1orf50", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDAAAPGRTEGVLERQGAPPAAGQGGALVELTPTPGGLALVSPYHTHRAGDPLDLVALAEQVQKADEFIRANATNKLTVIAEQIQHLQEQARKVLEDAHRDANLHHVACNIVKKPGNIYYLYKRESGQQYFSIISPKEWGTSCPHDFLGAYKLQHDLSWTPYEDIEKQDAKISMMDTLLSQSVALPPCTEPNFQGLTH", "sequence_length": 199, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c365c89b93052ca81052997248f83296edbbebd5eaf0104688d836dc058f648", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BV19.json", "taxon_id": "9606", "uniprot_accession": "Q9BV19", "uniprot_release": "2026_03" } ], "pfam_id": "PF10504", "short_name": "DUF2452", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem65-pf10507.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10507", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem65-pf10507.yaml" } ], "pfam_ids": [ "PF10507" ], "protein_name": "Uncharacterized protein C03B8.3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDRSIAKMLSNQQIRNFSRGVGHLRRRAAKNNVIKVRPEELRPFFNQYSVLPNGIQNDADAKLFSKELQPGERKLLFDALRKITADQYNDHKKVVEVTIDHEDLVKVWYINFIPMFVYGCLDEAFLIIGGESINNIFSVYNGMSMLASAAVANIICNLFLQLPADRINDVLGFKKPVLSVDQMNIPEYQYAAFGAKLSGLWMGLTLGMLPLFFIDDNLDNRASDNGDLLVSVANTNGDEYCELFCGD", "sequence_length": 247, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c2852724713d19b310c452af42dbf14ccf9a0aa949f022666a33ff7a6fa5e061", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q11106.json", "taxon_id": "6239", "uniprot_accession": "Q11106", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem65-pf10507.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10507", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem65-pf10507.yaml" } ], "pfam_ids": [ "PF10507" ], "protein_name": "Transmembrane protein 65", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRLLPLLGSRTARSLRPGPAAAPRLPSWCCCGRGLLALGVPGGPRLLGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLKELHRFESIAIAQEKLEALPPTPGQLRYVFFHNAIPFVGFGFLDNAIMIVAGTQIELSIGIILGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQVDMWQTRVSTHLGKAVGVTIGCILGMFPLIFFGGSEEDEKLETTN", "sequence_length": 234, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70835e639d177cb7766cc453583ebd3d1aba44d30d47498b70a54e77540ede15", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4VAE3.json", "taxon_id": "10090", "uniprot_accession": "Q4VAE3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/calcium-export-from-the-mitochondrion-go0099093.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0099093", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/calcium-export-from-the-mitochondrion-go0099093.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem65-pf10507.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10507", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem65-pf10507.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q6PI78", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10507" ], "protein_name": "Transmembrane protein 65", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "eecde79a63e6913745bdb1491d78d98c30ce896573f1fdb04538af226fab8727", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSRLLPLLRSRTARSLRPGPAAAAAPRPPSWCCCGRGLLALAPPGGLPGGPRRLGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLKELHRFESIAIAQEKLEAPPPTPGQLRYVFIHNAIPFIGFGFLDNAIMIVAGTHIEMSIGIILGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQVDMWQTRLSTHLGKAVGVTIGCILGMFPLIFFGGGEEDEKLETKS", "sequence_length": 240, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "eecde79a63e6913745bdb1491d78d98c30ce896573f1fdb04538af226fab8727", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PI78.json", "taxon_id": "9606", "uniprot_accession": "Q6PI78", "uniprot_release": "2026_03" } ], "pfam_id": "PF10507", "short_name": "TMEM65", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/ttt-hsp90-cochaperone-complex-go0110078.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0110078", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/ttt-hsp90-cochaperone-complex-go0110078.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-dna-damage-checkpoint-go2000003.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000003", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-dna-damage-checkpoint-go2000003.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tti2-pf10521.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10521", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tti2-pf10521.yaml" } ], "pfam_ids": [ "PF10521" ], "protein_name": "TEL2-interacting protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAVTDIIDELNDSSLSSTRLRELCLQLRKKTDTGCAITVSDEVNLIESLSYHSISPGVDIQINTDVLQTIDYYFQRNKSEHDEIMCVLISKLQPLLLKRKSNFELKEQRNLGLKPTLGMSLKEDNLMQAWVSQGGLKGIPLFYVILLHLKRRDISTNLSWIIPGILNILDDTTDIRRIKLRGVLLLQTLLNHTFMNETNDSKWIQFSSTGLFPLFEKTLINMCYFLPPSYNADETIAIWRVVFPTIQSLYKVEFLDNYTKYQYHLEKFMSEIILQNIIPRASLAYENLTLYALECTMNILRLQREGSVVHLQRLIFVLGEYIVRNPFYTTFPKLISKTLSVVSTLIKVCPNERIVAHRFDILSLILVTYDKCSQEDALNESILQQCKETISWLLNCDCAMGEQLSTLSKQPRFQLLFEFS", "sequence_length": 421, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "558305ce5d4cc10321dc9afda01616b211993ccb4eee454fe853d1523ef8c6c8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47168.json", "taxon_id": "559292", "uniprot_accession": "P47168", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tti2-pf10521.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10521", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tti2-pf10521.yaml" } ], "pfam_ids": [ "PF10521" ], "protein_name": "TELO2-interacting protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELDSALEAPSQEDSNLSEELSHSAFGQAFSKILHCLARPEARRGNVKDAVLKDLGDLIEATEFDRLFEGTGARLRGMPETLGQVAKALEKYAAPSKEEEGGGDGHSEAAEKAAQVGLLFLKLLGKVETAKNSLVGPAWQTGLHHLAGPVYIFAITHSLEQPWTTPRSREVAREVLTSLLQVTECGSVAGFLHGENEDEKGRLSVILGLLKPDLYKESWKNNPAIKHVFSWTLQQVTRPWLSQHLERVLPASLVISDDYQTENKILGVHCLHHIVLNVPAADLLQYNRAQVLYHAISNHLYTPEHHLIQAVLLCLLDLFPILEKTLHWKGDGARPTTHCDEVLRLILTHMEPEHRLLLRRTYARNLPAFVNRLGILTVRHLKRLERVIIGYLEVYDGPEEEARLKILETLKLLMQHTWPRVSCRLVVLLKALLKLICDVARDPNLTPESVKSALLQEATDCLILLDRCSQGRVKGLLAKIPQSCEDRKVVNYIRKVQQVSEGAPYNGT", "sequence_length": 508, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "754ad6e0cf4514840375bab092a54a7bc7d5e4eabce4d7b2aa119c1e73235dcc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NXR4.json", "taxon_id": "9606", "uniprot_accession": "Q6NXR4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tti2-pf10521.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10521", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tti2-pf10521.yaml" } ], "pfam_ids": [ "PF10521" ], "protein_name": "TELO2-interacting protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLDSAEEKSGVGCSLPAEGSPPALEPAFSKILNRLSRPKSSGQGGARNAALKDLGALIEAAEGDRFFEGSGSGGSLRGMPEILGQVVRALEKFAAPEEKADGVEEHPEVPEKATEVGSLFLKLLGKVEAAKSSPDCPAWKTGLRHMSGPVYIFAITHRLKQPWTSPASQHVAGEVLSLLLRVTECSSVAGFLCGENEDDRGRFAVVLGLLKPHLNKETWKKNPAVKHVFSWTLQQVTQPWLNQHLEKILPPSLLISDDYQTENKILGVQCLHHIVVTVPAADLLQYNRAQVLYHALFNHLYMPEHHLIQAVLLCLLDLFPVLEKALHWKGDTARVTTHCHEVLQLILTHMEPEHRLLLRRTYARHLPAFVKRLGILTVRHLKRLEQVILGYLEVYDEPEDETRLKILETLKLVMQYTWPRIPCRVVVLLKALLKLICDISRDTIPTTEAAKSTMLQEATDCLILLDHCSQGQVKGLLAKIAVSCEDSTVVSCIRKVQQGSADSPGDDTEGD", "sequence_length": 512, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "67bc1be5d91bbe461f596b55bc6653ebd5823c27cd3c279661d39353f0d295de", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BGV4.json", "taxon_id": "10090", "uniprot_accession": "Q8BGV4", "uniprot_release": "2026_03" } ], "pfam_id": "PF10521", "short_name": "Tti2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/c2orf69-pf10561.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10561", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/c2orf69-pf10561.yaml" } ], "pfam_ids": [ "PF10561" ], "protein_name": "Mitochondrial protein C2orf69 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQVVQSPHNLVFMGSIRSVVACLSLAAVARKMTAATGQSVSGTSAAAAGLLRLTSVPGYDHNRVNDVLLLRPAAETQRRCDNETQNLQDGNDHVVFFPGDIQNFQQEMALQPDAAPWQCWSLERVGLTLAHRFPGCHIWVIRASQMYLHKFSCYQNFVESNLFGAPEHSADYGAIRHLRALLGHSMQQAGLPNPLPPLSGTSTPGPLPAGFSLTIVGFSKGCVVLNQIVYELAGARADPELQLFLDRVSALYWLDGGHPGGSETWVTDKCALGELASSGVAVHAHVTPYEVRDPMRAWVGREHRHFIKTLEDLGARVSHKLHFEDEPASIDNHFRVIQEF", "sequence_length": 341, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "98ce95e319f53312ed2a5aec1c2c3c2dddbb143543e5f42f4245a8502712293c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0JMH2.json", "taxon_id": "7955", "uniprot_accession": "A0JMH2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/c2orf69-pf10561.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10561", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/c2orf69-pf10561.yaml" } ], "pfam_ids": [ "PF10561" ], "protein_name": "Mitochondrial protein C2orf69", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWGFRLLRSPPLLLLLPQLGIGNASSCSQARTMNPGGSGGARCSLSAEVRRRQCLQLSTVPGADPQRSNELLLLAAAGEGLERQDLPGDPAKEEPQPPPQHHVLYFPGDVQNYHEIMTRHPENYQWENWSLENVATILAHRFPNSYIWVIKCSRMHLHKFSCYDNFVKSNMFGAPEHNTDFGAFKHLYMLLVNAFNLSQNSLSKKSLNVWNKDSIASNCRSSPSHTTNGCQGEKVRTCEKSDESAMSFYPPSLNDASFTLIGFSKGCVVLNQLLFELKEAKKDKNIDAFIKSIRTMYWLDGGHSGGSNTWVTYPEVLKEFAQTGIIVHTHVTPYQVRDPMRSWIGKEHKKFVQILGDLGMQVTSQIHFTKEAPSIENHFRVHEVF", "sequence_length": 385, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "26a289c3631df1f0ec19b527c1e3e44ce8360cf079b6fe4146215f3bbca4f117", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N8R5.json", "taxon_id": "9606", "uniprot_accession": "Q8N8R5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/c2orf69-pf10561.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10561", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/c2orf69-pf10561.yaml" } ], "pfam_ids": [ "PF10561" ], "protein_name": "Mitochondrial protein C2orf69 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLGSRRLRSPALVLLLLRPLLASGDSASRLQTRAMNPGGGERGSPEDSHRLQRSTVPGSDPQRSNELLLLTSREGDSPEQRHHVLYFPGDVQNYHEIMTRHPENYQWENWSLENIATILARRFPNSYIWVIKCSRMHLHKFSCYDNFVKSNMFGAPEHTPDFGAFKHLYMLLVNAFNLTQNGMLFKNRSVWNKDCKASNCESNPSTSNGGQKENERTCEHVDEPSMSFPPLSLDGASFTLIGFSKGCVVLNQLLFELKEAKKDKNIDAFIKSIRTMYWLDGGHSGGSNTWVTYPEVLEEFAQTGITVHTHVTPYQVHDPMRSWIGKEHKKFVQILRDLGMQVTSQIHFAKETPSIENHFRVHEVF", "sequence_length": 365, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d9b567ca6e0cbf7e808bef790096cd7f333d3587d546af4123fa1bf4006190be", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D9H8.json", "taxon_id": "10090", "uniprot_accession": "Q9D9H8", "uniprot_release": "2026_03" } ], "pfam_id": "PF10561", "short_name": "C2orf69", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fam171-c-terminal-ipr049175.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049175", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fam171-c-terminal-ipr049175.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fam171-n-terminal-ipr048530.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048530", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fam171-n-terminal-ipr048530.yaml" } ], "pfam_ids": [ "PF10577", "PF20771" ], "protein_name": "Protein FAM171A2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPPSGPGVLARLLPLLGLLLGGASRAPGKSPPEPPSPQEILIKVQVYVSGELVPLARASVDVFGNRTLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPGFLTNSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVHILLGSPGARSQPWVQFQRRAARLPVSSTYSQLWASLTPASTQQEMRAFPAFLGTEASSSGNGSWLELIPLAAVSVHLLTGNGTEVPLSGPIHLSLPVPSEPRALAVGTSIPAWRFDPKSGLWVRNGTGVIRKEGRQLYWTFVSPQLGYWVAAMASPTSGLVTITSGIQDIGTYHTIFLLTILAALALLVLILLCLLIYYCRRRCLKPRQQHRKLQLSGPSDNKRDQATSMSQLHLICGGPLEPTSSGDPEAPPPGSLHSAFSSSRDLASSRDDFFRAKPRSASRPAAEPPGARTVEGAGLKSARSVEGPGGLEPSLDEYRRGPAGAAAFLHEPPSPPPSFDHYLGHKGAAESKTPDFLLSQSVDQLARPPSLSQPGQLIFCGSIDHLKDNVYRNVMPTLVIPAHYVRLGGEAGAAGVGDEATPPEGSAAGPARPFPQPDPQRPLMQGHAGAGGDSGGGEGWGGGRSAPVSGSVTIPVLFNESTMAQLNGELQALTEKKLLELGVKPHPRAWFVSLDGRSNSQVRHSYIDLQAGSGGRSTDASLDSGVDVHEARPARRRLPREERERAQLPAPPPPAPPRLALSEDTEPSSSESRTGLCSPEDNSLTPLLDEVVAPEGRAATVPRGRGRSRGDSSRSSASELRRDSLTSPEDELGAEVGDEAGDKKSPWQRREERPLMVFNVK", "sequence_length": 822, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "feb9835ab25ad0707e99d0b90d773c872d02bff65cabcc5f226f4e6b57bd41b4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2A699.json", "taxon_id": "10090", "uniprot_accession": "A2A699", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fam171-c-terminal-ipr049175.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049175", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fam171-c-terminal-ipr049175.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fam171-n-terminal-ipr048530.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048530", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fam171-n-terminal-ipr048530.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fam171a1-2-b-c-pf20771.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fam171a1-2-b-c-pf20771.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fam171a1-2-b-n-pf10577.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10577", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fam171a1-2-b-n-pf10577.yaml" } ], "pfam_ids": [ "PF10577", "PF20771" ], "protein_name": "Protein FAM171A2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPASGPSVLARLLPLLGLLLGSASRAPGKSPPEPPSPQEILIKVQVYVSGELVPLARASVDVFGNRTLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPGFLTNSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVHILLGSPGARSQPLVQFQRRAARLPVSSTYSQLWASLTPASTQQEMRAFPAFLGTEASSSGNGSWLELMPLTAVSVHLLTGNGTEVPLSGPIHLSLPVPSETRALTVGTSIPAWRFDPKSGLWVRNGTGVIRKEGRQLYWTFVSPQLGYWVAAMASPTAGLVTITSGIQDIGTYHTIFLLTILAALALLVLILLCLLIYYCRRRCLKPRQQHRKLQLSGPSDGNKRDQATSMSQLHLICGGPLEPAPSGDPEAPPPGPLHSAFSSSRDLASSRDDFFRTKPRSASRPAAEPSGARGGESAGLKGARSAEGPGGLEPGLEEHRRGPSGAAAFLHEPPSPPPPFDHYLGHKGAAEGKTPDFLLSQSVDQLARPPSLGQAGQLIFCGSIDHLKDNVYRNVMPTLVIPAHYVRLGGEAGAAGVGDEPAPPEGTAPGPARAFPQPDPQRPQMPGHSGPGGEGGGGGGEGWGAGRAAPVSGSVTIPVLFNESTMAQLNGELQALTEKKLLELGVKPHPRAWFVSLDGRSNSQVRHSYIDLQAGGGARSTDASLDSGVDVHEARPARRRPAREERERAPPAAPPPPPAPPRLALSEDTEPSSSESRTGLCSPEDNSLTPLLDEVAAPEGRAATVPRGRGRSRGDSSRSSASELRRDSLTSPEDELGAEVGDEAGDKKSPWQRREERPLMVFNVK", "sequence_length": 826, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b202e5efbf12612eceb4887a56995bf66fda45d0c81aec13329829add91559fe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8MVW0.json", "taxon_id": "9606", "uniprot_accession": "A8MVW0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fam171-c-terminal-ipr049175.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049175", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fam171-c-terminal-ipr049175.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fam171-n-terminal-ipr048530.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048530", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fam171-n-terminal-ipr048530.yaml" } ], "pfam_ids": [ "PF10577", "PF20771" ], "protein_name": "Protein FAM171B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARLCRRVPCALLLGLAAVLLKARLVPAAARAELSRSDLSLIQQQQQQQQQQQLQEQKQREEAEEGRPEVPGASSTLVAPVSVFMLKVQVNDIVSRQYLSQAVVEVFVNYSKTNSTVTRSNGAVLIKVPYQLGLSLTIVAYKDGYVLTSLPWKTGRMPIYSSVTLSLFPQSQANIWLFEDTVLITGKLADAKSQPSVQFSKAFIKLPDNHHISNVTGYLTVLHQFLKVDSFLPATGVTYKSGLENVELTPHAAICVKIYSGGKELKVDGSIHVSLPLLHTSNIKIGDRIPAWTFDMNAGVWVHHGWGTVKEHNSHLIWTYDAPHLGYWIAAPSPATLDFGINDDFQDITAYHTVFLTAILGGTIVIIIGFFAILLCYCRGKCATPQKRERNITKLEILKRDQTTSTTHINHISSVKTALKAEDKPQLFNAKTSSYSPQRKETTKTEAEERISMVKTRDNFKIYNEDVSFLSVNHNYSRNPTQSLEPSMGSKQPKHINNNLSPSLGDAQEEKRYLTGTEEVYGRSHIPEQLMHIYSQPIAILQTSDLFSMPEQLHAAKSATLPRKGQLVYGQLMEPVNRENFTQTLPKMPMHSHVQAPDAREEDIVLEGQQSLPSQTSDWSRYSNSLLESVSVPGTLNEAVVMTPFSSELQGISEQTLLELSKGKPPHPRAWFVSLDGKPVAQVRHSFIDLKKGKRTQSNDTSLDSGVDMNEHQSSRKLEREKTFIKSMHQPKILYLEDLDLSSSESGTTVCSPEDPALRHILEGGSGVIIEHPGEESPGRKSTVEDFEANTSPTKKRGRPPPLAKRDSKTNIWKKREERPLIPLN", "sequence_length": 825, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5dfe5e28533127719854b63a7e5e6de7b1150f55e6f45005812b8689d244ce5a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q14CH0.json", "taxon_id": "10090", "uniprot_accession": "Q14CH0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fam171-c-terminal-ipr049175.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049175", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fam171-c-terminal-ipr049175.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fam171-n-terminal-ipr048530.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048530", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fam171-n-terminal-ipr048530.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fam171a1-2-b-c-pf20771.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fam171a1-2-b-c-pf20771.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fam171a1-2-b-n-pf10577.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10577", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fam171a1-2-b-n-pf10577.yaml" } ], "pfam_ids": [ "PF10577", "PF20771" ], "protein_name": "Protein FAM171A1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRSATLLLCLLGCHVWKAVTKTLREPGAGAQEVTLKVHISDASTHQPVADALIEIFTNQASIASGTSGTDGVAFIKFQYKLGSQLIVTASKHAYVPNSAPWKPIRLPVFSSLSLGLLPERSATLMVYEDVVQIVSGFQGARPQPRVHFQRRALRLPENTSYSDLTAFLTAASSPSEVDSFPYLRGLDGNGTGNSTRHDLTPVTAVSVHLLSSNGTPVLVDGPIYVTVPLATQSSLRHNAYVAAWRFDQKLGTWLKSGLGLVHQEGSQLTWTYIAPQLGYWVAAMSPPIPGPVVTQDITTYHTVFLLAILGGMAFILLVLLCLLLYYCRRKCLKPRQHHRKLQLPAGLESSKRDQSTSMSHINLLFSRRASEFPGPLSVTSHGRPEAPGTKELMSGVHLEMMSPGGEGDLHTPMLKLSYSTSQEFSSREELLSCKEEDKSQISFDNLTPSGTLGKDYHKSVEVFPLKARKSMEREGYESSGNDDYRGSYNTVLSQPLFEKQDREGPASTGSKLTIQEHLYPAPSSPEKEQLLDRRPTECMMSRSVDHLERPTSFPRPGQLICCSSVDQVNDSVYRKVLPALVIPAHYMKLPGDHSYVSQPLVVPADQQLEIERLQAELSNPHAGIFPHPSSQIQPQPLSSQAISQQHLQDAGTREWSPQNASMSESLSIPASLNDAALAQMNSEVQLLTEKALMELGGGKPLPHPRAWFVSLDGRSNAHVRHSYIDLQRAGRNGSNDASLDSGVDMNEPKSARKGRGDALSLQQNYPPVQEHQQKEPRAPDSTAYTQLVYLDDVEQSGSECGTTVCTPEDSALRCLLEGSSRRSGGQLPSLQEETTRRTADAPSEPAASPHQRRSAHEEEEDDDDDDQGEDKKSPWQKREERPLMAFNIK", "sequence_length": 890, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0b5afb182fc810d20a38be220bbdbf0e37eb5ef1dd7b779bd7c12f7ba5829431", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VUB5.json", "taxon_id": "9606", "uniprot_accession": "Q5VUB5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fam171-c-terminal-ipr049175.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049175", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fam171-c-terminal-ipr049175.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fam171-n-terminal-ipr048530.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048530", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fam171-n-terminal-ipr048530.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fam171a1-2-b-c-pf20771.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fam171a1-2-b-c-pf20771.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fam171a1-2-b-n-pf10577.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10577", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fam171a1-2-b-n-pf10577.yaml" } ], "pfam_ids": [ "PF10577", "PF20771" ], "protein_name": "Protein FAM171B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARLCRRVPCTLLLGLAVVLLKARLVPAAARAELSRSDLSLIQQQQQQQQQQQQQQKQLEEAEEERTEVPGATSTLTVPVSVFMLKVQVNDIISRQYLSQAVVEVFVNYTKTNSTVTKSNGAVLIKVPYKLGLSLTIIAYKDGYVLTPLPWKTRRMPIYSSVTLSLFPQSQANIWLFEDTVLITGKLADAKSQPSVQFSKALIKLPDNHHISNVTGYLTVLQQFLKVDNFLHTTGITLNKPGFENIELTPLAAICVKIYSGGKELKVNGSIQVSLPLLRLNDISAGDRIPAWTFDMNTGAWVNHGRGMVKEHNNHLIWTYDAPHLGYWIAAPLPGTRGSGINEDSKDITAYHTVFLTAILGGTIVIVIGFFAVLLCYCRDKCGTPQKRERNITKLEVLKRDQTTSTTHINHISTVKVALKAEDKSQLFNAKNSSYSPQKKEPSKAETEERVSMVKTRDDFKIYNEDVSFLSVNQNNYSRNPTQSLEPNVGSKQPKHINNNLSSSLGDAQDEKRYLTGNEEAYGRSHIPEQLMHIYSQPIAILQTSDLFSTPEQLHTAKSATLPRKGQLVYGQLMEPVNRENFTQTLPKMPIHSHAQPPDAREEDIILEGQQSLPSQASDWSRYSSSLLESVSVPGTLNEAVVMTPFSSELQGISEQTLLELSKGKPSPHPRAWFVSLDGKPVAQVRHSFIDLKKGKRTQSNDTSLDSGVDMNELHSSRKLEREKTFIKSMHQPKILYLEDLDLSSSESGTTVCSPEDPALRHILDGGSGVIMEHPGEESPGRKSTVEDFEANTSPTKRRGRPPLAKRDSKTNIWKKREERPLIPIN", "sequence_length": 826, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "35882e5c5f84a36cbfeea2532a4d9f39264b96a50026248e9c0e572ddfce2f2e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P995.json", "taxon_id": "9606", "uniprot_accession": "Q6P995", "uniprot_release": "2026_03" } ], "pfam_id": "PF10577", "short_name": "FAM171A1-2-B_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fam161a-b-pf10595.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10595", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fam161a-b-pf10595.yaml" } ], "pfam_ids": [ "PF10595" ], "protein_name": "Protein FAM161A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATSHRVAKLVASSLQTPVNPITGARVAQYEREDPLKALAAAEAILEDEEEEKVAQPAGASADLNTSFSGVDEHAPISYEDFVNFPDIHHSNEEYFKKVEELKAAHIETMAKLEKMYQDKLHLKEVQPVVIREDSLSDSSRSVSEKNSYHPVSLMTSFSEPDLGQSSSLYVSSSEEELPNLEKEYPRKNRMMTYAKELINNMWTDFCVEDYIRCKDTGFHAAEKRRKKRKEWVPTITVPEPFQMMIREQKKKEESMKSKSDIEMVHKALKKQEEDPEYKKKFRANPVPASVFLPLYHDLVKQKEERRRSLKEKSKEALLASQKPFKFIAREEQKRAAREKQLRDFLKYKKKTNRFKARPIPRSTYGSTTNDKLKEEELYRNLRTQLRAQEHLQNSSPLPCRSACGCRNPRCPEQAVKLKCKHKVRCPTPDFEDLPERYQKHLSEHKSPKLLTVCKPFDLHASPHASIKREKILADIEADEENLKETRWPYLSPRRKSPVRCAGVNPVPCNCNPPVPTVSSRGREQAVRKSEKERMREYQRELEEREEKLKKRPLLFERVAQKNARMAAEKHYSNTLKALGISDEFVSKKGQSGKVLEYFNNQETKSVTEDKESFNEEEKIEERENGEENYFIDTNSQDSYKEKDEANEESEEEKSVEESH", "sequence_length": 660, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b47321f3db14c5e0863d021f555ccabb8c5130c0c8282bc9eb22549ac3039dbd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3B820.json", "taxon_id": "9606", "uniprot_accession": "Q3B820", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/photoreceptor-cell-cilium-go0097733.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097733", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/photoreceptor-cell-cilium-go0097733.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fam161a-b-pf10595.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10595", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fam161a-b-pf10595.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8QZV6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10595" ], "protein_name": "Protein FAM161A", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "93285d5ff924d4f875c4d0892b63623bd0a17e9425b87c69d57affc179b54ae0", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNFSDIYHSDEEYFRKLKDLKAVHEETMSKLEKMYQDKLNIKDIQAGFIRDGISDSSSSSASEKSCSHPALSVTSLSEPDLDGSSSLSTTTDEGLPDLEEKTPGESSAMVHAQELINNMWNDFSVEDYIQYDSDSRTAKKKRKKAKSLTPKITVPVPFEMTVREQNRREKALSARSDLETKLLKRDEDDAECKKKFRANPVPSCVLLPLYEDLVKQSEERRKKARERNRAALLASLKPFKFIAREEQKQAVREKKLRDLFRAKRKTNQFKAKPVPRFIYRPAASDKPKEEELYGDSRMLPKVRDLLQNSPWPSRSACRRFRDPRSPAKPRGKHRRRCLRRDGDLEKWKEPFSEYSFLKCPMLCEECCLHESPCDSDKRQKLLADIRADEEILRETRRPGRSPRRKSPGRSSNPKPRPHECSPPMPTASSRGREQAIRRSEKARMREYWQELEEQEEKLQKRPMLFERVTQVVFIG", "sequence_length": 475, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "93285d5ff924d4f875c4d0892b63623bd0a17e9425b87c69d57affc179b54ae0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8QZV6.json", "taxon_id": "10090", "uniprot_accession": "Q8QZV6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fam161a-b-pf10595.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10595", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fam161a-b-pf10595.yaml" } ], "pfam_ids": [ "PF10595" ], "protein_name": "Protein FAM161B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVGRPEGAPGGAEGSRQIFPPESFADTEAGEELSGDGLVLPRASKLDEFLSPEEEIDSTSDSTGSIYQNLQELKQKGRWCLLESLFQSDPESDENLSEDEEDLESFFQDKDRGMVQVQCPQALRCGSTRRCSSLNNLPSNIPRPQTQPPSGSRPPSQHRSVSSWASSITVPRPFRMTLREARKKAEWLGSPASFEQERQRAQRQGEEEAECHRQFRAQPVPAHVYLPLYQEIMERSEARRQAGIQKRKELLLSSLKPFSFLEKEEQLKEAARQRDLAATAEAKISKQKATRRIPKSILEPALGDKLQEAELFRKIRIQMRALDMLQMASSPIASSSNRANPQPRTATRTQQEKLGFLHTNFRFQPRVNPVVPDYEGLYKAFQRRAAKRRETQEATRNKPFLLRTANLRHPQRPCDAATTGRRQDSPQPPATPLPRSRSLSGLASLSANTLPVHITDATRKRESAVRSALEKKNKADESIQWLEIHKKKSQAMSKSVTLRAKAMDPHKSLEEVFKAKLKENRNNDRKRAKEYKKELEEMKQRIQTRPYLFEQVAKDLAKKEAEQWYLDTLKQAGLEEDFVRNKGQGTRAVQEKETKIKDFPRFQETTKLSIRDPEQGLEGSLEQPASPRKVLEELSHQSPENLVSLA", "sequence_length": 647, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0b1478ead138480da319f0645582171e700c8c34f19b5a0d762ebee385fd7b81", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96MY7.json", "taxon_id": "9606", "uniprot_accession": "Q96MY7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10595", "short_name": "FAM161A_B", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2469-pf10611.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10611", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2469-pf10611.yaml" } ], "pfam_ids": [ "PF10611" ], "protein_name": "Uncharacterized protein Mb2925c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAEDLEKYETEMELSLYREYKDIVGQFSYVVETERRFYLANSVEMVPRNTDGEVYFELRLADAWVWDMYRPARFVKQVRVVTFKDVNIEEVEKPELRLPE", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3824428885c0bad7ae32d724080d4ab07a5d0a7716ab222a366ff23b3d31b5ee", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P65052.json", "taxon_id": "233413", "uniprot_accession": "P65052", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2469-pf10611.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10611", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2469-pf10611.yaml" } ], "pfam_ids": [ "PF10611" ], "protein_name": "Uncharacterized protein MT2969", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAEDLEKYETEMELSLYREYKDIVGQFSYVVETERRFYLANSVEMVPRNTDGEVYFELRLADAWVWDMYRPARFVKQVRVVTFKDVNIEEVEKPELRLPE", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3824428885c0bad7ae32d724080d4ab07a5d0a7716ab222a366ff23b3d31b5ee", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WL26.json", "taxon_id": "83331", "uniprot_accession": "P9WL26", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2469-pf10611.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10611", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2469-pf10611.yaml" } ], "pfam_ids": [ "PF10611" ], "protein_name": "Uncharacterized protein Rv2901c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAEDLEKYETEMELSLYREYKDIVGQFSYVVETERRFYLANSVEMVPRNTDGEVYFELRLADAWVWDMYRPARFVKQVRVVTFKDVNIEEVEKPELRLPE", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3824428885c0bad7ae32d724080d4ab07a5d0a7716ab222a366ff23b3d31b5ee", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WL27.json", "taxon_id": "83332", "uniprot_accession": "P9WL27", "uniprot_release": "2026_03" } ], "pfam_id": "PF10611", "short_name": "DUF2469", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Helicobacter pylori (strain ATCC 700392 / 26695)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2470-pf10615.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10615", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2470-pf10615.yaml" } ], "pfam_ids": [ "PF01243", "PF10615" ], "protein_name": "Heme oxygenase HugZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLNRIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDPQGIVIGYNHNQTLRIEFNHEVKDPKDYKNAIIELCQSVEKTHDLKGVEEEVKAFKESFDSVCLATLHPNGHVVCSYAPLMSDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNARFIERGAEFDKAFDSFIEKTGGAGGIKTIRAMQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGDKGNPHNFAHKK", "sequence_length": 251, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e317c1f9c2fbc167082ac9ad6b918f4e7c5bc53556778e735cb138a23672194c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O25087.json", "taxon_id": "85962", "uniprot_accession": "O25087", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/tetrapyrrole-biosynthetic-process-go0033014.yaml", "qualification_status": 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"qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10629", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cmi2b-like-pf10629.yaml" } ], "pfam_ids": [ "PF10629" ], "protein_name": "Ciliary microtubule inner protein 2B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVASTFIPGLNPQNPHYIPGYTGHCPLLRFSVGQTYGQVTGQLLRGPPGLAWPPVHRTLLPPIRPPRSPEVPRESLPVRRGQERLSSSMIPGYTGFVPRAQFIFAKNCSQVWAEALSDFTHLHEKQGSEELPKEAKGRKDTEKDQVPEPEGQLEEPTLEVVEQASPYSMDDRDPRKFFMSGFTGYVPCARFLFGSSFPVLTNQALQEFGQKHSPGSAQDPKHLPPLPRTYPQNLGLLPNYGGYVPGYKFQFGHTFGHLTHDALGLSTFQKQLLA", "sequence_length": 275, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a35dcfc62e87f4a5e223528dd246922015182b8f40d3f6728173b610347bea56", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8MTA8.json", "taxon_id": "9606", "uniprot_accession": "A8MTA8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ciliary-microtubule-inner-protein-2a-c-like-domain-ipr018902.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018902", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ciliary-microtubule-inner-protein-2a-c-like-domain-ipr018902.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cmi2b-like-pf10629.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10629", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cmi2b-like-pf10629.yaml" } ], "pfam_ids": [ "PF10629" ], "protein_name": "Ciliary microtubule inner protein 2A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTTQKHDLFTPEPHYVPGYAGFFPQLRYQVGNTYGRTTGQLLTDPSVQKSPCSVLSPMSKPKFIEDFSQSKPPRVPCQDLTEPYIPHYTSLKPSKNFEILGQLPPLEVDAQEPPGVENIPRQILLPAGFTPDTPHPPCPPGRKGDSRDLGHPVYGEEAWKSATPVCEAPRQHQLYHCQRDEYPPPARRQQETLDVGSFQRLPQLDHPNLIQRKAISGYAGFIPRFTWVMGLNYRDGVMQAMDEFDKSQFLFRNPHCDLGEKLPGTHWPSNHIYSSQGLIPFYMGFIPAMQDNYALTFGNSTRRAYWKEWAKRNHTL", "sequence_length": 317, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e181873433e2343701713017c57c331c810ddf8c77edd027ca46747caa9074f6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6J272.json", "taxon_id": "9606", "uniprot_accession": "Q6J272", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ciliary-microtubule-inner-protein-2a-c-like-domain-ipr018902.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018902", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ciliary-microtubule-inner-protein-2a-c-like-domain-ipr018902.yaml" } ], "pfam_ids": [ "PF10629" ], "protein_name": "CIMIP2 protein CG18335", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDHAITPEPHLVPGYTGHCAQNRDRVGRTYGRQTHKLLIDPCIYHAPELIVAPIHAKRGLKDYPTEQELKILRTREGLVDSVYRHPILPGYAGFVPNKVSQIGKRYVAAASAGVARHETLMELYRCENRTLRHRDLLESGNGLFDRKINERLLPQTYYRSPLILVTGVSKGIKDETCPPKTEKLCYSKFTSPHFLEDEDADKFIINGYSGHIPMSVTRFGESNKVLTNRALCSFSDYMYKRKRDTWCCGQDLSRPSITCPPVGHFVVYHEDSGMVPNYAGHVPGETYKFGRTYAKTTYDAKRWLEVHKNLTVLPEVANLDYAY", "sequence_length": 323, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2b57f540f4dd4efa2d9aede58bfc2f32e5dc810818ca7c7a41ff49d92a0252a3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7JRP4.json", "taxon_id": "7227", "uniprot_accession": "Q7JRP4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ciliary-microtubule-inner-protein-2a-c-like-domain-ipr018902.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018902", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ciliary-microtubule-inner-protein-2a-c-like-domain-ipr018902.yaml" } ], "pfam_ids": [ "PF10629" ], "protein_name": "Ciliary microtubule inner protein 2A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTATQKHNLFTPEPHYIPGYAGFYPQLRYQVGNTYGRTTAQLLTDPSVQKSPCSVLSPMTKPKFIEDFSKSKPPWIPCRDLREPYIPHYTSLKPYKNFEILGQLPRQDVDTQGPPQVENRQGPLTAGFMPYPPYPACPPGRKGEARDLGHPGLLLAYGEEAWKDAAPLQDTPGKNNQLYHCRRDEYLPPHPPQETLDVGRFQRLPQLDHPNLIQRKAISGYAGFVPRFAWVMGMNYRDGVTQAMDDFDKNQFVFRHPVCALGERLPRTHWPNTTIYRSQGLIPFYMGFIPSMQDNYALTFGNSTRRAYQKELDRRSHTL", "sequence_length": 319, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2c0afe2a36658319f2766a3a8a92e1affc6fc7e25b0961fd3b8a4ab3f7b6f098", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D4K5.json", "taxon_id": "10090", "uniprot_accession": "Q9D4K5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ciliary-microtubule-inner-protein-2a-c-like-domain-ipr018902.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018902", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ciliary-microtubule-inner-protein-2a-c-like-domain-ipr018902.yaml" } ], "pfam_ids": [ "PF10629" ], "protein_name": "Ciliary microtubule inner protein 2C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFRSAGTLMTEFNAAFVPPALMPGYKGHVPGVASSFGSSYGNTTFKYFQDLRNTGLEKSYALLSGGCFPTIFSPNSPLVLTDNSQNWDRWLHQPTYSRSNQDNGRTTELTNFYKTVQQQRKYYQDKTGILSRVPYFVLPVKEPDRYPLPTDLPPLSEKSKWNLLRLSPDYKRTYQTFPSGKRVSSQERQRRDLYFEFRA", "sequence_length": 200, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60ab651550476767f965044e8c0e8deca643bea784f27f8a8419da2821a1d5d0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DAS2.json", "taxon_id": "10090", "uniprot_accession": "Q9DAS2", "uniprot_release": "2026_03" } ], "pfam_id": "PF10629", "short_name": "CMI2B-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2476-pf10630.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2476-pf10630.yaml" } ], "pfam_ids": [ "PF10630" ], "protein_name": "Proline-rich protein 23A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSRPRSPSAFPAPWWGQQPGGPGPAKRLRLEEPAGPEPRVAPSLEDPAGTPAVGALTSIVVLAAGCALRVPLDDVDLVLELPPTSILRVSLDGHTLILIPEVLLSSVDERSGAQDDSSAGLEVDVFLGALREDVVVEQEVFCASVPEIAAQEEAYEEDADPEFPELQMDSAAGSAAGLYSSARSMFSPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRVGSPGPHAHPPLPKRPPCKARRRLFQE", "sequence_length": 266, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1dde9bd15b58dba9f2125af56519113a813a13a7503a27dcef41c9aa3e116464", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6NEV1.json", "taxon_id": "9606", "uniprot_accession": "A6NEV1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2476-pf10630.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2476-pf10630.yaml" } ], "pfam_ids": [ "PF10630" ], "protein_name": "Proline-rich protein 23C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSRPCSPSACLAPWWGQQPGGPGPAKRSRLEEPAGPESRAAPSPEDPAGTPAVDALTSMVVLDAGCALRVPLEDVDLVLELAPMSVLRVSLGGHTLIVIPEVLLSSVDECSGAQGDWSAGLEVDVFLGAHGEDVVVEQEVCASVPEIAAEEEAYEEDADSEFPELWMDSAAGSAAGLYPSARSMFSPYREGPIRGPCALAPNPSSERRSPRPIFDLEFHLLEPVPSSPLQPLPPSPSPGPHARPELPERPPCKVRRRLFQE", "sequence_length": 262, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d38998ae94c2b2e710217d622747d712650c734754fe64e894cbc20edff8e7c8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZRP0.json", "taxon_id": "9606", "uniprot_accession": "Q6ZRP0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2476-pf10630.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2476-pf10630.yaml" } ], "pfam_ids": [ "PF10630" ], "protein_name": "Proline-rich protein 23B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSRPRSPSAFPAPWWGQQPGGPGPAKRLRLEEPAGPEPRAAPSLEDPAGDPAVDALTSIVVLAAGCALRVPLDDVDLVLEPAPTSILRVSLGGHTLILIPEVLLSSVDERSGAQHDSSAGLEVDVFLGAVREDVVVELEFCASVPEIAAQEEAYEEDADPEFPELRMDSPTGSAAGLYPSSRSMFIPYREGPIPEPCALAPNPSSERRSPRPIFDLEFRLLEPVPSSPLQPLPPSPCVGSPGPHARSPLPERPPCKARRRLFQA", "sequence_length": 265, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea3733fdbc1d27c822d57fc74cc0230dee1bff680306f601a1ccdb70aa03876f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZRT6.json", "taxon_id": "9606", "uniprot_accession": "Q6ZRT6", "uniprot_release": "2026_03" } ], "pfam_id": "PF10630", "short_name": "DUF2476", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2477-pf10631.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10631", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2477-pf10631.yaml" } ], "pfam_ids": [ "PF10631" ], "protein_name": "Cysteine-rich tail protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDPHETLVKNPYAHISIPRAHLRPELGQQRKAGPSSAESRPLPVRSCTLEPLEEAPGPKGTKGRPASQQPCKPCGSGQRPAGLAYAGPPPAQRGDDIAHHCWCCPCCSCCHCPRFCRCHSCCCVVS", "sequence_length": 126, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "109340e51c7d40e1a6c24ca7715bfa0d7fc8281c43572ce4ed0e4267045fc170", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0JNN6.json", "taxon_id": "9913", "uniprot_accession": "A0JNN6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2477-pf10631.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10631", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2477-pf10631.yaml" } ], "pfam_ids": [ "PF10631" ], "protein_name": "Cysteine-rich tail protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDPQEMVVKNPYAHISIPRAHLRPDLGQQLEVASTCSSSSEMQPLPVGPCAPEPTHLLQPTEVPGPKGAKGNQGAAPIQNQQAWQQPGNPYSSSQRQAGLTYAGPPPAGRGDDIAHHCCCCPCCHCCHCPPFCRCHSCCCCVIS", "sequence_length": 144, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2ad4975055e09efb4495e410dfd906acb0032eebacab7be8ce31bffa9bc5b9d4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8MQ03.json", "taxon_id": "9606", "uniprot_accession": "A8MQ03", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2477-pf10631.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10631", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2477-pf10631.yaml" } ], "pfam_ids": [ "PF10631" ], "protein_name": "Cysteine-rich tail protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDPHEMVVKNPYAHISIPRAHLRSDLGQQLEEVPSSSSSSETQPLPAGTCIPEPVGLLQTTEAPGPKGIKGIKGTAPEHGQQTWQSPCNPYSSGQRPSGLTYAGLPPVGRGDDIAHHCCCCPCCSCCHCPRFCRCHSCCVIS", "sequence_length": 142, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "77f4b208d1f9a2f5781fbf1fa5b983bd5334f6680ffc9a53c50938aafa3da11a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D1E4.json", "taxon_id": "10090", "uniprot_accession": "Q9D1E4", "uniprot_release": "2026_03" } ], "pfam_id": "PF10631", "short_name": "DUF2477", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem234-pf10639.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10639", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem234-pf10639.yaml" } ], "pfam_ids": [ "PF10639" ], "protein_name": "Transmembrane protein 234", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAASWGQVLALVLVAALWGGTQPLLKRASSGLEQVRERTWAWQLLQEIKALFGNTEYLMPFLLNQSGSLLYYLTLASTDLTLAVPICNSLAIVFTLIVGKVLGEDIGGKEAVAGMVLTITGITVCITSSVSKTQGQPSHS", "sequence_length": 140, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f57da16c9747ae8f227c371fc7917e9ede85f7211f244c587c0e71796c373e8e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R1E7.json", "taxon_id": "10090", "uniprot_accession": "Q8R1E7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem234-pf10639.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10639", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem234-pf10639.yaml" } ], "pfam_ids": [ "PF10639" ], "protein_name": "Transmembrane protein 234", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAASLGQVLALVLVAALWGGTQPLLKRASAGLQRVHEPTWAQQLLQEMKTLFLNTEYLMPFLLNQCGSLLYYLTLASTDLTLAVPICNSLAIIFTLIVGKALGEDIGGKRAVAGMVLTVIGISLCITSSVPWTAELQLHGKGQLQTLSQKCKREASGTQSERFG", "sequence_length": 164, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9e95c550a227d5f1a83fb43ed39e3a0bae61a895074db03cd319f2ece04c5517", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WY98.json", "taxon_id": "9606", "uniprot_accession": "Q8WY98", "uniprot_release": "2026_03" } ], "pfam_id": "PF10639", "short_name": "TMEM234", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2478-pf10649.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10649", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2478-pf10649.yaml" } ], "pfam_ids": [ "PF00005", "PF03459", "PF10649" ], "protein_name": "Molybdenum import ATP-binding protein ModC 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"e9decaf65f4338e269f2799cbdd82d1cf0a41c0353ff96b1df4056ba3745f8a9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q89EW7.json", "taxon_id": "224911", "uniprot_accession": "Q89EW7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10649", "short_name": "DUF2478", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10651", "short_name": "BppU_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10652", "short_name": "DUF2480", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10654", "short_name": "DUF2481", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], 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"registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e03cedcdb76308fdc672bd24fcb20e12c337cbc901ecf33f75f6d77daee0d355", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVAAFSYTACTKLSLLHPSMVAQIRPRTTQKAFVVTNPEQDSTLEVQETETLKEEQSTEKMKKQPTPLRPVEKQLNVKSKGMGDFGGQWLSSVTRHVRIYAAYIDPETCEFDQSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVDHYEGAPLTEYTLRLIGSDVEHYIRKMLFDGEIQYNMDARVLNFSMGKPRVQFNTSNIEGGGDGQPQEDA", "sequence_length": 217, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e03cedcdb76308fdc672bd24fcb20e12c337cbc901ecf33f75f6d77daee0d355", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2V2S7.json", "taxon_id": "3702", "uniprot_accession": "Q2V2S7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10664", "short_name": "NdhM", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10667", "short_name": "DUF2486", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4198-pf10670.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10670", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4198-pf10670.yaml" } ], "pfam_ids": [ "PF10670" ], "protein_name": "Uncharacterized protein HI_1427", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKTLITSLLVLSGIAQAHEVWVQAPTKLASGSVLKAELAYGDYPYVEKIPEARLKIFAPMEIIHQNGEKQTLIQKGENYQYQSEKALSDGSYWVTATYKPTFWSQNAEGWKMDNLKGLENPTYCEQTQMFGKSLVTVGKKPLNAEMAMTRVGLPLEIVPLRDPSKAKSGEPFPVQIFYQDQPLAGETVIATADTIIVKDLEASTGHREPQGFSGKTDSQGRVNIIPLIDGIWKIKVIHKTPFADQQICQQSASYSTLILPVGKGLAKLPPKPEHHHH", "sequence_length": 278, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c764308273d0c8642da1bcf7dc6909cd6bf231f6f92f0e5c336455b35b12583d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44196.json", "taxon_id": "71421", "uniprot_accession": "P44196", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4198-pf10670.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10670", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4198-pf10670.yaml" } ], "pfam_ids": [ "PF10670" ], "protein_name": "Uncharacterized protein HI_1624", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELKKIAVGLTALLGMSVANAHNVWLEPASSQDEYVVKFGHEQTETYPESKLKSIQALNSQGKLTAVDYQFRNGEAYLMPKSDLVFVHFDNGVWSKLPSGKYVEKTKREEPTAEFSTNPVKFGKAILKWDAESFKSHQQAYELIPQEKAQANKPLSILVLHNGKPVQGIKVGVSEDAPFNLTNEKGIAQFTPTKGFNKVWAEFEEKVTNNADYDRRTVEYMLTFDAQ", "sequence_length": 227, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "806a5bd16d01cc0a9c76232b1178d188e310ddacf7c492dff250bc232c6673ae", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44276.json", "taxon_id": "71421", "uniprot_accession": "P44276", "uniprot_release": "2026_03" } ], "pfam_id": "PF10670", "short_name": "DUF4198", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2487-pf10673.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10673", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2487-pf10673.yaml" } ], "pfam_ids": [ "PF10673" ], "protein_name": "Uncharacterized protein YpiF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRWRITDAKDYLQAKDYIDTAVIPLINIRVNNHFKMAAEKGEFTQLLSEELERQLKGRVYLLPPYTYVDRNEITVQGLKDLREELITEFPHVVLLTSDESWRAEDALGKMIVTSSVPLEHLNDSLKRKILDERTAEILNVLLQLWSTL", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0e629fe58dadee889a5226d3680285850f6aa28b2df6fc01848ae30bb7ea3700", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54391.json", "taxon_id": "224308", "uniprot_accession": "P54391", "uniprot_release": "2026_03" } ], "pfam_id": "PF10673", "short_name": "DUF2487", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/magnesium-protoporphyrin-ix-monomethyl-ester-oxidative-cyclase-activity-go0048529.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0048529", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/magnesium-protoporphyrin-ix-monomethyl-ester-oxidative-cyclase-activity-go0048529.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/ycf54-like-superfamily-ipr038409.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/uncharacterised-protein-family-ycf54-3-30-70-1860.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.70.1860", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/uncharacterised-protein-family-ycf54-3-30-70-1860.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": 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"ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2498-pf10692.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10692", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2498-pf10692.yaml" } ], "pfam_ids": [ "PF10692" ], "protein_name": "Protein YciN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAKSTAVFNMFKHLAHVLSEKYHLVD", "sequence_length": 83, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "be870ca9f3b9a08aa85a18f4ad604202023fdd64801a2ea8bee0c770e2541040", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AB63.json", "taxon_id": "83334", "uniprot_accession": "P0AB63", "uniprot_release": "2026_03" } ], "pfam_id": "PF10692", "short_name": "DUF2498", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cyanophora paradoxa", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2499-pf10693.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10693", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2499-pf10693.yaml" } ], "pfam_ids": [ "PF10693" ], "protein_name": "Uncharacterized protein ycf49", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNVLSYFTWFVHLSSVLEWLNIIYFFLLYTKLKKNLSLKTFIFSFFISFCSALCACTLHFFNNQSFYYFLINLQSFLTLFANITLYFSILIYKQQILKNQNY", "sequence_length": 102, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cf04131b6fb2c720beff8cb64e5a65136621478b60f5faf6d8570e5e650cf353", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P15811.json", "taxon_id": "2762", "uniprot_accession": "P15811", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2499-pf10693.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10693", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2499-pf10693.yaml" } ], "pfam_ids": [ "PF10693" ], "protein_name": "Ycf49-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNALSIPTWMVHVSSVIEWIVAIALVSRYATKAGYGHWRALAWGMVPALVSATCACTWHFFDNASQLDWLVTLQALTTVIGNITLCLAAWWIYRQSAQPSAPKP", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d2b0a549a71e277da4436464678fd48699cc80a03b7395a226c3f1bf0ec48151", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q55720.json", "taxon_id": "1111708", "uniprot_accession": "Q55720", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cyanidium caldarium", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2499-pf10693.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10693", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2499-pf10693.yaml" } ], "pfam_ids": [ "PF10693" ], "protein_name": "Uncharacterized protein ycf49", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYSLSLPTWNIHIVTLVEWSIVIRLIYLFTYFYDIPRSFNFLIIILMIFFFLSGLFACCWHFFNNNSILLWISVAQAALTAFSNFFFLLFISAYYHK", "sequence_length": 97, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "51ca539795bf8a04fb0201d39d77a7328f567dc184c7aa1e2c5e8a7698768799", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9TM18.json", "taxon_id": "2771", "uniprot_accession": "Q9TM18", "uniprot_release": "2026_03" } ], "pfam_id": "PF10693", "short_name": "DUF2499", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2500-pf10694.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10694", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2500-pf10694.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-40-50-660-2-40-50-660.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.40.50.660", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-40-50-660-2-40-50-660.yaml" } ], "pfam_ids": [ "PF10694" ], "protein_name": "Uncharacterized protein YhhM", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKPPLFFIVIIGLIVVAASFRFMQQRREKADNDMAPLQQKLVVVSNKREKPINDRRSRQQEVTPAGTSIRYEASFKPQSGGMEQTFRLDAQQYHALTVGDKGTLSYKGTRFVSFVGEQ", "sequence_length": 119, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ba880e7388c4735983ef4577aaf33de2e1b7be6c4b82c5b9225656832b6f03bd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37615.json", "taxon_id": "83333", "uniprot_accession": "P37615", "uniprot_release": "2026_03" } ], "pfam_id": "PF10694", "short_name": "DUF2500", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008663.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008663", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008663.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008666.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008666", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008666.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2501-pf10696.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10696", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2501-pf10696.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P18390", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10696" ], "protein_name": "Uncharacterized protein YjjA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c5d3cf69e410e03c84953e22422439492445939ab69f62c74e0d66c9832ab01a", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MMKTVKHLLCCAIAASALISTGVHAASWKDALSSAASELGNQNSTTQEGGWSLASLTNLLSSGNQALSADNMNNAAGILQYCAKQKLASVTDAENIKNQVLEKLGLNSEEQKEDTNYLDGIQGLLKTKDGQQLNLDNIGTTPLAEKVKTKACDLVLKQGLNFIS", "sequence_length": 164, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c5d3cf69e410e03c84953e22422439492445939ab69f62c74e0d66c9832ab01a", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P18390.json", "taxon_id": "83333", "uniprot_accession": "P18390", "uniprot_release": "2026_03" } ], "pfam_id": "PF10696", "short_name": "DUF2501", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2502-pf10697.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10697", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2502-pf10697.yaml" } ], "pfam_ids": [ "PF10697" ], "protein_name": "Uncharacterized protein YpeC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFRSLFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYWDGGHWRDRDYWHRNYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGKGRGHGHRH", "sequence_length": 108, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cc21f301893e8bb4290ea02921d73a6ad521e870f933bf955aadc4ac26c014b3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64542.json", "taxon_id": "83333", "uniprot_accession": "P64542", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2502-pf10697.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10697", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2502-pf10697.yaml" } ], "pfam_ids": [ "PF10697" ], "protein_name": "Uncharacterized protein YpeC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFRSLFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYWDGGHWRDRDYWHRNYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGKGRGHGHRH", "sequence_length": 108, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cc21f301893e8bb4290ea02921d73a6ad521e870f933bf955aadc4ac26c014b3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64543.json", "taxon_id": "83334", "uniprot_accession": "P64543", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2502-pf10697.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10697", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2502-pf10697.yaml" } ], "pfam_ids": [ "PF10697" ], "protein_name": "Uncharacterized protein YaaX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGDRDNRGYYWDGGHWRDHGWWKQHYEWRGNRWHLHGPPPPPRHHKKAPHDHHGGHGPGKHHR", "sequence_length": 98, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f00476df83f77345a1621895fe9ca09aae5f23ac8d6278393e860e03745ce77", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75616.json", "taxon_id": "83333", "uniprot_accession": "P75616", "uniprot_release": "2026_03" } ], "pfam_id": "PF10697", "short_name": "DUF2502", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2505-pf10698.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10698", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2505-pf10698.yaml" } ], "pfam_ids": [ "PF10698" ], "protein_name": "Uncharacterized protein Mb0491c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPRSFDMSADYEGSVEEVHRAFYEADYWKARLAETPVDVATLESIRVGGDSGDDGTIEVVTLQMVRSHNLPGLVTQLHRGDLSVRREETWGPVKEGIATASIAGSIVDAPVNLWGTAVLSPIPESGGSRMTLQVTIQVRIPFIGGKLERLIGTQLSQLVTIEQRFTTLWITNNV", "sequence_length": 174, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "825503027df1ef34db884898dcd47860723b4d3ab878c4b3a183c2586a8cb709", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64702.json", "taxon_id": "233413", "uniprot_accession": "P64702", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2505-pf10698.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10698", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2505-pf10698.yaml" } ], "pfam_ids": [ "PF10698" ], "protein_name": "Uncharacterized protein MT0499", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPRSFDMSADYEGSVEEVHRAFYEADYWKARLAETPVDVATLESIRVGGDSGDDGTIEVVTLQMVRSHNLPGLVTQLHRGDLSVRREETWGPVKEGIATASIAGSIVDAPVNLWGTAVLSPIPESGGSRMTLQVTIQVRIPFIGGKLERLIGTQLSQLVTIEQRFTTLWITNNV", "sequence_length": 174, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "825503027df1ef34db884898dcd47860723b4d3ab878c4b3a183c2586a8cb709", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKV4.json", "taxon_id": "83331", "uniprot_accession": "P9WKV4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2505-pf10698.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10698", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2505-pf10698.yaml" } ], "pfam_ids": [ "PF10698" ], "protein_name": "Uncharacterized protein Rv0481c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPRSFDMSADYEGSVEEVHRAFYEADYWKARLAETPVDVATLESIRVGGDSGDDGTIEVVTLQMVRSHNLPGLVTQLHRGDLSVRREETWGPVKEGIATASIAGSIVDAPVNLWGTAVLSPIPESGGSRMTLQVTIQVRIPFIGGKLERLIGTQLSQLVTIEQRFTTLWITNNV", "sequence_length": 174, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "825503027df1ef34db884898dcd47860723b4d3ab878c4b3a183c2586a8cb709", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKV5.json", "taxon_id": "83332", "uniprot_accession": "P9WKV5", "uniprot_release": "2026_03" } ], "pfam_id": "PF10698", "short_name": "DUF2505", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2507-pf10702.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2507-pf10702.yaml" } ], "pfam_ids": [ "PF10702" ], "protein_name": "Uncharacterized protein YslB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSKFEASIDNLKEIEMNAYAYELIREIVLPDMLGQDYSSMMYWAGKHLARKFPLESWEEFPAFFEEAGWGTLTNVSAKKQELEFELEGPIISNRLKHQKEPCFQLEAGFIAEQIQLMNDQIAESYEQVKKRADKVVLTVKWDMKDPV", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "66b7a3091cb715188bf8e98c52addc0710605833f5de4640ab60d65467431fca", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P42955.json", "taxon_id": "224308", "uniprot_accession": "P42955", "uniprot_release": "2026_03" } ], "pfam_id": "PF10702", "short_name": "DUF2507", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2508-pf10704.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10704", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2508-pf10704.yaml" } ], "pfam_ids": [ "PF10704" ], "protein_name": "Uncharacterized protein YaaL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFLRKKTLRREFDEKLTEQLFKQKEEWNRQKKLVEKSLEPSAEVLYELKVAEAKYFFYLREAKQRNLKISRWK", "sequence_length": 74, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e6e1ce8501c3d351c159c68e2265bf0883b055b506d31f049d96c3f2af470bd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37533.json", "taxon_id": "224308", "uniprot_accession": "P37533", "uniprot_release": "2026_03" } ], "pfam_id": "PF10704", "short_name": "DUF2508", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10708", "short_name": "DUF2510", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yeby-pf10709.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10709", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yeby-pf10709.yaml" } ], "pfam_ids": [ "PF10709" ], "protein_name": "Protein YebY", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMKKSILAFLLLTSSAAALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPGNALYVINPSTLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGEKMSLAPFIERAEKLC", "sequence_length": 113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c6e07e3c4ce493c28165d93a6e88710fb892844394a3170679d32045e5a57f9f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64506.json", "taxon_id": "83333", "uniprot_accession": "P64506", "uniprot_release": "2026_03" } ], "pfam_id": "PF10709", "short_name": "YebY", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2512-pf10710.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2512-pf10710.yaml" } ], "pfam_ids": [ "PF10710" ], "protein_name": "Uncharacterized membrane protein YndM", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIMNGFELHYLSFVYAQEFSSKNNNLGGQMKHIIALASKIAFTLALLYVILDRVYHASFLSVMFIALFLGFVSYLSGDMLVLPRTNNITASLADFGLSFVILWVFVLTQTRNDFSPFGAALLSAACLTVFEYFFHRYLLKNVLDENFRNELSARDNTLQYQTEAADELFPETKEKHKE", "sequence_length": 179, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f789018053e5cac6d9551ba196a404b0a12ccfccc0c2edd906ca3edd01aed32", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31816.json", "taxon_id": "224308", "uniprot_accession": "O31816", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2512-pf10710.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2512-pf10710.yaml" } ], "pfam_ids": [ "PF10710" ], "protein_name": "Uncharacterized protein YcbP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTHVKALAIKGIMTIIVLYLVLGLGFGFTFGDTLLMTIVLGVISYLLGDLYVLPKWNNMIATLADFGLAFLVIWLMGMPLSMGMTGGEVALAALFGAIVMAIGEYCFHFYMMSKEIGKKHYLETRTDS", "sequence_length": 128, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e0530403ee22a13d0eb66325389e752ff7f7b95d6da7eeee58e46c43f376c913", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P42248.json", "taxon_id": "224308", "uniprot_accession": "P42248", "uniprot_release": "2026_03" } ], "pfam_id": "PF10710", "short_name": "DUF2512", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2513-pf10711.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10711", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2513-pf10711.yaml" } ], "pfam_ids": [ "PF10711" ], "protein_name": "Uncharacterized protein HI_1406", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRNWDLIRSILLKLESQSEARGSLLPDGFTGFDSETVSYHFKLLQSAGLIEAIDYSSLNEMSLIARLLTWQGHELLDKIRNDTVWNSLKTTIKSKSLDLSLDAIKQVAQTIISQMLA", "sequence_length": 118, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bf3e9f5a6018c252732138263a435a91bf1b004db0c5d51d27c53660b7582a35", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44181.json", "taxon_id": "71421", "uniprot_accession": "P44181", "uniprot_release": "2026_03" } ], "pfam_id": "PF10711", "short_name": "DUF2513", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/duf2509-family-protein-nf008569.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008569", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/duf2509-family-protein-nf008569.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2509-pf10713.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10713", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2509-pf10713.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P08370", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10713" ], "protein_name": "Uncharacterized protein YgdB", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6e2c78b084b12a2c3e4fd8ee6dd99fbae90f298049e38aba464026b498ce5a17", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALAWGKMHCWQTQPAVQCSQYAETDAQVCLRLLADNEALLIAGYEGVSLWRTGEVIDGNIVFSPRGWSDFCPLKERALCQLP", "sequence_length": 135, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6e2c78b084b12a2c3e4fd8ee6dd99fbae90f298049e38aba464026b498ce5a17", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P08370.json", "taxon_id": "83333", "uniprot_accession": "P08370", "uniprot_release": "2026_03" } ], "pfam_id": "PF10713", "short_name": "DUF2509", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2515-pf10720.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10720", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2515-pf10720.yaml" } ], "pfam_ids": [ "PF10720" ], "protein_name": "Uncharacterized protein YppC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNVQEQQAIRKLLSRIERQTKMKNADNISRTNAYKAFYDRHPEIKWSLLASFVSRNAGWSMTDLKGSLFQLGLRERQQKWFFLAYERANWLIFSDAYPQLLLYHWSKRVGKPLFHLLHVFGVSQFMSEEWTRFWHERNTERLMYALIINEQNTIQTPIIQNPSFKKNVFDTIPFYLSDWFHFNTVIFPSSNGFFYGISVKRFSKAEERIRLGKQLSQLLFKPELFSSFYHFLHTVPHTGSRFDMEKMIGITKRTSPMLRTCYPELIHSLDGTKTDWFHGKIKKTFFRREELPKQIELTDWYLHKKRQLHALFAVEQWLKK", "sequence_length": 320, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0623e4bc4d5df6779fd8849e7651b49e7dfabad09cffdaf1ce8f3f5ffed5c319", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P39791.json", "taxon_id": "224308", "uniprot_accession": "P39791", "uniprot_release": "2026_03" } ], "pfam_id": "PF10720", "short_name": "DUF2515", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage N15", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2514-pf10721.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10721", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2514-pf10721.yaml" } ], "pfam_ids": [ "PF10721" ], "protein_name": "Protein gp55", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNPSPLIAAIKAWWKPLFVLIFAASAFIAGNVWSNRAWEKRWADRDSAESSQKVNAQTAARMIEQGRIIARDEAVKNAKEKAAAARDASARLAGTVSQLQQQARKLATRLDAAKHTADLAAAVRGKTAGANAAVLADMLGSLAAEAKYYAERSDESYRAGMTCQRIYDSVRESNNQSGASQ", "sequence_length": 181, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "564fa74918dce8df2f076b6f1fd337db51294aec4beb1624b3058ed5b5228925", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O64363.json", "taxon_id": "1604876", "uniprot_accession": "O64363", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2514-pf10721.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10721", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2514-pf10721.yaml" } ], "pfam_ids": [ "PF10721" ], "protein_name": "Uncharacterized protein RzpQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNQIFMVIFLVLSGFIVGNVWSDRGWQKKWAERDAAALSQEVNAQFAARIIEQGRTIARDEAVKDAQQKSAEISARAAYLSDSVNQLRAEAKKYAIRLDAAKHTADLAAAVRGKTTKTAEGMLTNMLGDIAAEAQLYAEIADERYIAGVTCQQIYESLRDKKHQM", "sequence_length": 165, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6e086b94328845c4b61d39257c95f4b243c18d01692cd403f3729a3cae1f3a39", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76158.json", "taxon_id": "83333", "uniprot_accession": "P76158", "uniprot_release": "2026_03" } ], "pfam_id": "PF10721", "short_name": "DUF2514", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2516-pf10724.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10724", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2516-pf10724.yaml" } ], "pfam_ids": [ "PF10724" ], "protein_name": "Uncharacterized protein Mb0486", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRPKLLEIQGKSR", "sequence_length": 87, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "edea2c5b2f1f819f3b9695243ffdbc7892936e0883989ac2591a54a065b30bc6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64696.json", "taxon_id": "233413", "uniprot_accession": "P64696", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2516-pf10724.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10724", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2516-pf10724.yaml" } ], "pfam_ids": [ "PF10724" ], "protein_name": "Uncharacterized protein Rv0476", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRPKLLEIQGKSR", "sequence_length": 87, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "edea2c5b2f1f819f3b9695243ffdbc7892936e0883989ac2591a54a065b30bc6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKW1.json", "taxon_id": "83332", "uniprot_accession": "P9WKW1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium leprae (strain TN)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2516-pf10724.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10724", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2516-pf10724.yaml" } ], "pfam_ids": [ "PF10724" ], "protein_name": "Uncharacterized protein ML2453", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLVLQLAVLVTAVYAFVHAALQRPDAYTAAEKLTKPVWLVILGAAVSLTSILGFVFGVLGIVIAACAAGVYLVDVRPKLLDIQGKSR", "sequence_length": 87, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "29d93137dd574dcc9f9f298dce223dbe125e2d2dd389a058c5311c67c306ac57", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CB43.json", "taxon_id": "272631", "uniprot_accession": "Q9CB43", "uniprot_release": "2026_03" } ], "pfam_id": "PF10724", "short_name": "DUF2516", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2517-pf10725.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10725", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2517-pf10725.yaml" } ], "pfam_ids": [ "PF10725" ], "protein_name": "Uncharacterized protein YbfA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLHRVWSKTSDKPVWMDQAEKATGDFY", "sequence_length": 68, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "02d34cc62de327e7453ce996c83c90e3c1baf5ad9551bb6d99bf407b7cbc6964", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAU2.json", "taxon_id": "83333", "uniprot_accession": "P0AAU2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2517-pf10725.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10725", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2517-pf10725.yaml" } ], "pfam_ids": [ "PF10725" ], "protein_name": "Uncharacterized protein YbfA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLHRVWSKTSDKPVWMDQAEKATGDFY", "sequence_length": 68, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "02d34cc62de327e7453ce996c83c90e3c1baf5ad9551bb6d99bf407b7cbc6964", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAU3.json", "taxon_id": "83334", "uniprot_accession": "P0AAU3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2517-pf10725.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10725", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2517-pf10725.yaml" } ], "pfam_ids": [ "PF10725" ], "protein_name": "Uncharacterized protein YbfA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLHRVWSKTSDKPVWMDQAEKATGDFY", "sequence_length": 68, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "02d34cc62de327e7453ce996c83c90e3c1baf5ad9551bb6d99bf407b7cbc6964", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAU4.json", "taxon_id": "623", "uniprot_accession": "P0AAU4", "uniprot_release": "2026_03" } ], "pfam_id": "PF10725", "short_name": "DUF2517", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cyanophora paradoxa", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2518-pf10726.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10726", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2518-pf10726.yaml" } ], "pfam_ids": [ "PF10726" ], "protein_name": "Uncharacterized protein ycf51", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIEFSLLTKITLSFTILFLILSIISIIKGWKNRFQFIGVTSFSALLTISFFVFTFVPFTHKLIPGAEKYKVVFDDGANQIVIAVSSKLNQDQLVATLEQAASDLFSPGRLSRNNNSFIIKARALSDSIGTTNNSLYLGELDKILDSNTNDFETKIKIFNDSTL", "sequence_length": 163, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5544c76adae5db3d167d71a0cd1b0e3552e067bad03db48401ed552c60c320de", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P48327.json", "taxon_id": "2762", "uniprot_accession": "P48327", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2518-pf10726.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10726", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2518-pf10726.yaml" } ], "pfam_ids": [ "PF10726" ], "protein_name": "Ycf51-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVTIYLRWSAYATIASFIFMVLAFVFRWGFRFRLVGVTSFMTVLTIGIFGLGLGMFDRPTVEGSVKFNRVYDNGANQIVISVPVTVSATEVEATLKQAANNYFSLGRISTDGKEQMVIRARTLIHPQPGLTKPLYLGSAYRTLGTKENDQIEIKLDRKALRELERNQAA", "sequence_length": 170, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c67a51c81d5858cfbddc1b0e7232742288adaae257fd8631e5595eb1fcb44ec9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P73690.json", "taxon_id": "1111708", "uniprot_accession": "P73690", "uniprot_release": "2026_03" } ], "pfam_id": "PF10726", "short_name": "DUF2518", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10728", "short_name": "DUF2520", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2521-pf10730.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10730", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2521-pf10730.yaml" } ], "pfam_ids": [ "PF10730" ], "protein_name": "Uncharacterized protein YbaK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEVLSFMDVKRQKDFELEKNLLKELSLRQIIQSVKDCLEPLFPFLHDERDIITEGCIDFAIEAYLLGGRFGIFGYYGESMQSISARSAREEEELRMEFFDYLYNWIHEQYATFDKNTVYEAARKFIKDWWTAGFVQREKQCKLRMR", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9bc3e8e0f2f09a86ac31c05f7a1b23a96eedce103fefb418b0ed4a401a3317b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P50862.json", "taxon_id": "224308", "uniprot_accession": "P50862", "uniprot_release": "2026_03" } ], "pfam_id": "PF10730", "short_name": "DUF2521", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2524-pf10732.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10732", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2524-pf10732.yaml" } ], "pfam_ids": [ "PF10732" ], "protein_name": "Uncharacterized protein YtzC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATRQSVDEHLQQCMQAYDYAEEQLKIASKQEHYNDQEYSDAQMQLEDAVNALNKLWLSSNDQQREQLYRMRLQLQSLQNNMILQHPLDV", "sequence_length": 90, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0724383501fff9b9f7d9b289c3b8571a68d0e913cd6584968636e476c89bad12", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32073.json", "taxon_id": "224308", "uniprot_accession": "O32073", "uniprot_release": "2026_03" } ], "pfam_id": "PF10732", "short_name": "DUF2524", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/single-species-biofilm-formation-on-inanimate-substrate-go0044011.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044011", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/single-species-biofilm-formation-on-inanimate-substrate-go0044011.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2525-pf10733.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10733", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2525-pf10733.yaml" } ], "pfam_ids": [ "PF10733" ], "protein_name": "Uncharacterized protein YodD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHVSVDGREYHTWRELADAFELDIHDFSVSEVNR", "sequence_length": 75, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "44183a1a7e257df36113835b652b49af7385866a7256f86b18266da82af2fff8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64519.json", "taxon_id": "83333", "uniprot_accession": "P64519", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2525-pf10733.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10733", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2525-pf10733.yaml" } ], "pfam_ids": [ "PF10733" ], "protein_name": "Uncharacterized protein YodD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHVSVDGREYHTWRELADAFELDIHDFSVSEVNR", "sequence_length": 75, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "44183a1a7e257df36113835b652b49af7385866a7256f86b18266da82af2fff8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64520.json", "taxon_id": "199310", "uniprot_accession": "P64520", "uniprot_release": "2026_03" } ], "pfam_id": "PF10733", "short_name": "DUF2525", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas phage Pf3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2523-pf10734.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10734", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2523-pf10734.yaml" } ], "pfam_ids": [ "PF10734" ], "protein_name": "Head virion protein G6P", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARLLALVIGYALSSFVLKLFTVLGVGIFTYVGLTALVDGFLNLLQPMLTGLPSYILDILAIAGVPEALSIVGSALLTRASINSAKAFVGVLT", "sequence_length": 93, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bde139e69ba1c6b9ea4b4a3f2a714c7036e393d907ec2fa44065b83502ac2adb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P03625.json", "taxon_id": "10872", "uniprot_accession": "P03625", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2523-pf10734.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10734", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2523-pf10734.yaml" } ], "pfam_ids": [ "PF10734" ], "protein_name": "Accessory cholera enterotoxin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLMMDTLYDWLIDGFTWLVIKLGIMWIESKIFVIQFFWEMSQKVIDMFTIYPLIQQAIDMLPPQYSGFLFFLGLDQALAIVLQALMTRFALRALNL", "sequence_length": 96, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d9de422b8ee5eeb0e23dc6da70c60c5e62d1956f6c42c6a1325905ac1a508bba", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38441.json", "taxon_id": "243277", "uniprot_accession": "P38441", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas phage Pf1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2523-pf10734.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10734", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2523-pf10734.yaml" } ], "pfam_ids": [ "PF10734" ], "protein_name": "Head virion protein G6P", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEWLSGFLDQIIAFFQWIWDFFAQGIYDFVRDGLVVATKASMYAALQTLILLIDVSYTAARELIDSLGVPQMIRSMYAALPGPIAAGLAFFGVPQALNIIMGRGGDALLHALRAVHWEVIRVDQDPSRPQWLLQNLRRDPG", "sequence_length": 141, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4237d0a4e923bce7bb7c61dccb537e492a6838500f2df7dd3c7a17f40480b0fa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q38066.json", "taxon_id": "2011081", "uniprot_accession": "Q38066", "uniprot_release": "2026_03" } ], "pfam_id": "PF10734", "short_name": "DUF2523", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2526-pf10735.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10735", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2526-pf10735.yaml" } ], "pfam_ids": [ "PF10735" ], "protein_name": "Uncharacterized protein YdcY", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSHLDEVIARVDAAIEESVIAHMNELLIALSDDAELSREDRYTQQQRLRTAIAHHGRKHKEDMEARHEQLTKGGTIL", "sequence_length": 77, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2f98d5c29c9a91972928ce9b0fc36cae7e42464b8cdaa1d0714fec562ed9fc46", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64455.json", "taxon_id": "83333", "uniprot_accession": "P64455", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2526-pf10735.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10735", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2526-pf10735.yaml" } ], "pfam_ids": [ "PF10735" ], "protein_name": "Uncharacterized protein YdcY", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSHLDEVIARVDAAIEESVIAHMNELLIALSDDAELSREDRYTQQQRLRTAIAHHGRKHKEDMEARHEQLTKGGTIL", "sequence_length": 77, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2f98d5c29c9a91972928ce9b0fc36cae7e42464b8cdaa1d0714fec562ed9fc46", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64457.json", "taxon_id": "83334", "uniprot_accession": "P64457", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2526-pf10735.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10735", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2526-pf10735.yaml" } ], "pfam_ids": [ "PF10735" ], "protein_name": "Uncharacterized protein YdcY", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSHLDEVIARVDAAIEESVIAHMNELLIALSDDAELSREDRYTQQQRLRTAIAHHGRKHKEDMEARHEQLTKGGTIL", "sequence_length": 77, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2f98d5c29c9a91972928ce9b0fc36cae7e42464b8cdaa1d0714fec562ed9fc46", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64458.json", "taxon_id": "623", "uniprot_accession": "P64458", "uniprot_release": "2026_03" } ], "pfam_id": "PF10735", "short_name": "DUF2526", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cellular-stress-response-to-acid-chemical-go0097533.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097533", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cellular-stress-response-to-acid-chemical-go0097533.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2527-pf10736.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10736", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2527-pf10736.yaml" } ], "pfam_ids": [ "PF10736" ], "protein_name": "Protein YobF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAKKTI", "sequence_length": 47, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "54824972b400f4e8435f99715dbe14ed4ac536e0f5100f290f899fa7d566aa7c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64508.json", "taxon_id": "83333", "uniprot_accession": "P64508", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2527-pf10736.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10736", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2527-pf10736.yaml" } ], "pfam_ids": [ "PF10736" ], "protein_name": "Protein YobF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAKKTI", "sequence_length": 47, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "54824972b400f4e8435f99715dbe14ed4ac536e0f5100f290f899fa7d566aa7c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64510.json", "taxon_id": "83334", "uniprot_accession": "P64510", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2527-pf10736.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10736", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2527-pf10736.yaml" } ], "pfam_ids": [ "PF10736" ], "protein_name": "Protein YobF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAKKTI", "sequence_length": 47, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "54824972b400f4e8435f99715dbe14ed4ac536e0f5100f290f899fa7d566aa7c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64511.json", "taxon_id": "623", "uniprot_accession": "P64511", "uniprot_release": "2026_03" } ], "pfam_id": "PF10736", "short_name": "DUF2527", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium leprae (strain TN)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2550-pf10739.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10739", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2550-pf10739.yaml" } ], "pfam_ids": [ "PF10739" ], "protein_name": "Uncharacterized protein ML1147", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAPMVGMVVLVVTLGAAVLALSYRLWKLRQGGTAGIMRDIPAVGGHGWRHGVIRYRGEAAAFYRLSSLRLWPDRRLSRRGVEIVARRGPRGDEFDIMTDKIVVLELRDTTQDRRSGYEIALDQGALAAFLSWLESRPSPRTRRRSV", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f176df0129ca8dcf5b97dd23bfd6cea5272662600d1a658431abac636a8997ab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53432.json", "taxon_id": "272631", "uniprot_accession": "P53432", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2550-pf10739.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10739", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2550-pf10739.yaml" } ], "pfam_ids": [ "PF10739" ], "protein_name": "Uncharacterized protein MT1352", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAPMIGMVVLVVVLGLAVLALSYRLWKLRQGGTAGIMRDIPAVGGHGWRHGVIRYRGGEAAFYRLSSLRLWPDRRLSRRGVEIISRRAPRGDEFDIMTDEIVVVELCDSTQDRRVGYEIALDRGALTAFLSWLESRPSPRARRRSM", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cb884fc0f8b5c1f5cfcae61b82a450cf59ffc2d3724223e7527cdd7f3883b0e9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM28.json", "taxon_id": "83331", "uniprot_accession": "P9WM28", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2550-pf10739.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10739", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2550-pf10739.yaml" } ], "pfam_ids": [ "PF10739" ], "protein_name": "Uncharacterized protein Rv1312", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAPMIGMVVLVVVLGLAVLALSYRLWKLRQGGTAGIMRDIPAVGGHGWRHGVIRYRGGEAAFYRLSSLRLWPDRRLSRRGVEIISRRAPRGDEFDIMTDEIVVVELCDSTQDRRVGYEIALDRGALTAFLSWLESRPSPRARRRSM", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cb884fc0f8b5c1f5cfcae61b82a450cf59ffc2d3724223e7527cdd7f3883b0e9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM29.json", "taxon_id": "83332", "uniprot_accession": "P9WM29", "uniprot_release": "2026_03" } ], "pfam_id": "PF10739", "short_name": "DUF2550", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2529-ipr019676.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019676", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2529-ipr019676.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2529-pf10740.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10740", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2529-pf10740.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/sis-domain-superfamily-ipr046348.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046348", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/sis-domain-superfamily-ipr046348.yaml" } ], "pfam_ids": [ "PF10740" ], "protein_name": "Uncharacterized protein YwjG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKIFTTQLTGIFSRIQDKESDAIEDGARLLAQAVISGHSIYLYGANELQGVFYEATESKEPFPSVKAFPENAEEVTESDRVLMFCSGTGTAEEQELAKELYEKGAGVVCVSPAAKDSAGIEQYCDVHIDSKLKMPLVPDEDGTRYGFPSLMTALYVYHALSFTLKEILQEYA", "sequence_length": 173, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "194089630c35feba18a413dafb37234763ca319f21acd2241d38216bb9834dc4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P06629.json", "taxon_id": "224308", "uniprot_accession": "P06629", "uniprot_release": "2026_03" } ], "pfam_id": "PF10740", "short_name": "DUF2529", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2555-pf10742.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2555-pf10742.yaml" } ], "pfam_ids": [ "PF10742" ], "protein_name": "Uncharacterized protein ssl0461", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSCRRLSTSGVLSMSVQNLSKQDVAALTAEDVAQLAQRLENDDYTDAFEGLRDWHLLRAIAFQREDLAEPYLYLLDNETYDEA", "sequence_length": 83, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea07d6b8d9b4a6e737701e88980e2e04efe3f2ad64f3549f651ea57f53abe12c", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2530-pf10745.yaml" } ], "pfam_ids": [ "PF10745" ], "protein_name": "Uncharacterized protein Mb0903c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVENSQIREPPPLPPVLLEVWPVIAVGALAWLVAAVAAFVVPGLASWRPVTVAGLATGLLGTTIFVWQLAAARRGARGAQAGLETYLDPK", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ecfebff2cb06b5b89a7f70642d808a4e1c1b1abf9d23d6f3107fdfb5e8e4168f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64736.json", "taxon_id": "233413", "uniprot_accession": "P64736", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2530-pf10745.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10745", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2530-pf10745.yaml" } ], "pfam_ids": [ "PF10745" ], "protein_name": "Uncharacterized protein MT0902", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVENSQIREPPPLPPVLLEVWPVIAVGALAWLVAAVAAFVVPGLASWRPVTVAGLATGLLGTTIFVWQLAAARRGARGAQAGLETYLDPK", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ecfebff2cb06b5b89a7f70642d808a4e1c1b1abf9d23d6f3107fdfb5e8e4168f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKR0.json", "taxon_id": "83331", "uniprot_accession": "P9WKR0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2530-pf10745.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10745", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2530-pf10745.yaml" } ], "pfam_ids": [ "PF10745" ], "protein_name": "Uncharacterized protein Rv0879c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVENSQIREPPPLPPVLLEVWPVIAVGALAWLVAAVAAFVVPGLASWRPVTVAGLATGLLGTTIFVWQLAAARRGARGAQAGLETYLDPK", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ecfebff2cb06b5b89a7f70642d808a4e1c1b1abf9d23d6f3107fdfb5e8e4168f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKR1.json", "taxon_id": "83332", "uniprot_accession": "P9WKR1", "uniprot_release": "2026_03" } ], "pfam_id": "PF10745", "short_name": "DUF2530", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sira-pf10747.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sira-pf10747.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/sira-superfamily-ipr038449.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038449", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/sira-superfamily-ipr038449.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/sporulation-inhibitor-of-replication-protein-sira-3-30-310-250.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.310.250", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/sporulation-inhibitor-of-replication-protein-sira-3-30-310-250.yaml" } ], "pfam_ids": [ "PF10747" ], "protein_name": "Sporulation inhibitor of replication protein SirA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERHYYTYLIKEEFANHYFGRESVMFELFQDYHWTSLEKQQYEMTEKQIQYITQPIPILHMHQRLKMNLNKTDYRQLDYIYRIALPKAKGHATFMMKEHMIEIVASGDYEAETIFFEVLRKVSPCFLAMDFNSKRYGWLNPVKERNFV", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "044053b0bbe3efd453b5e61f4627b9b055c67d7b521bb8a298abcb1c33120516", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P45707.json", "taxon_id": "224308", "uniprot_accession": "P45707", "uniprot_release": "2026_03" } ], "pfam_id": "PF10747", "short_name": "SirA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hofp-pf10748.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10748", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hofp-pf10748.yaml" } ], "pfam_ids": [ "PF10748" ], "protein_name": "DNA utilization protein HofP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQGDTNEAMDSRTTVDADTRRTGGKAAKSDADGG", "sequence_length": 134, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d367a1fc8523f9b5f30671f81e4288c4a55a7c5b80895955ee7c4eba658dbad0", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P45750.json", "taxon_id": "83333", "uniprot_accession": "P45750", "uniprot_release": "2026_03" } ], "pfam_id": "PF10748", "short_name": "HofP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2534-pf10749.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10749", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2534-pf10749.yaml" } ], "pfam_ids": [ "PF10749" ], "protein_name": "Uncharacterized protein YnaJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMIFVYSLVFTVLLAIPLGIYFLGGEEQ", "sequence_length": 85, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "064d6ffd3f3f3e573e3391ff0c7cf672f6ecf5909e05734c8d6bab11ffe2a246", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64445.json", "taxon_id": "83333", "uniprot_accession": "P64445", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2534-pf10749.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10749", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2534-pf10749.yaml" } ], "pfam_ids": [ "PF10749" ], "protein_name": "Uncharacterized protein YnaJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMIFVYSLVFTVLLAIPLGIYFLGGEEQ", "sequence_length": 85, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "064d6ffd3f3f3e573e3391ff0c7cf672f6ecf5909e05734c8d6bab11ffe2a246", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64446.json", "taxon_id": "199310", "uniprot_accession": "P64446", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2534-pf10749.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10749", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2534-pf10749.yaml" } ], "pfam_ids": [ "PF10749" ], "protein_name": "Uncharacterized protein YnaJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMIFVYSLVFTVLLAIPLGIYFLGGEEQ", "sequence_length": 85, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "064d6ffd3f3f3e573e3391ff0c7cf672f6ecf5909e05734c8d6bab11ffe2a246", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64447.json", "taxon_id": "83334", "uniprot_accession": "P64447", "uniprot_release": "2026_03" } ], "pfam_id": "PF10749", "short_name": "DUF2534", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2536-pf10750.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10750", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2536-pf10750.yaml" } ], "pfam_ids": [ "PF10750" ], "protein_name": "Uncharacterized protein YrzA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNFQLDLIKDKVEFFEAASLQELEKKINTQIENNKAIMLRVKSVSHQTLVAEGRILYSAVVHFSAEA", "sequence_length": 67, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3fddda3cafb3c7e2f01f32e81018b12bf670eda72e32e232a7b6ac37b4a05c45", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32030.json", "taxon_id": "224308", "uniprot_accession": "O32030", "uniprot_release": "2026_03" } ], "pfam_id": "PF10750", "short_name": "DUF2536", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2535-pf10751.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2535-pf10751.yaml" } ], "pfam_ids": [ "PF10751" ], "protein_name": "Uncharacterized protein YpmP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLKSLEFKRGDGIQVKVTEIPVLKEDEHYFFMLHHHLQFYLKEVFSSNSRAKVYSFRHYMKRRMKWADYQAVFHQEVLKHNA", "sequence_length": 83, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6a8869e89a347631c3e0205b3a486b74982eb5c7e3a59949ba50aadf7edb7f28", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54177.json", "taxon_id": "224308", "uniprot_accession": "P54177", "uniprot_release": "2026_03" } ], "pfam_id": "PF10751", "short_name": "DUF2535", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2533-pf10752.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10752", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2533-pf10752.yaml" } ], "pfam_ids": [ "PF10752" ], "protein_name": "Uncharacterized protein YpbS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEVHKAISAHSSKQHEHIKAFMRLENMRELAIEEAVAKCRNDEPYTTDAINEITEQMNQLAKKGIVPTRRLVSKEMVREYVSRM", "sequence_length": 85, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9d1d81281d0e9c1a1d61a2b14a5549364eba139f1d4013ba7ddac512ce4eecad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54160.json", "taxon_id": "224308", "uniprot_accession": "P54160", "uniprot_release": "2026_03" } ], "pfam_id": "PF10752", "short_name": "DUF2533", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/autolysis-go0001896.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0001896", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/autolysis-go0001896.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/toxin-ghot-ortt-pf10753.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10753", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/toxin-ghot-ortt-pf10753.yaml" } ], "pfam_ids": [ "PF10753" ], "protein_name": "Orphan toxin OrtT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLYQHMLVFYAVMAAIAFLITWFLSHDKKRIRFLSAFLVGATWPMSFPVALLFSLF", "sequence_length": 57, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e1bc70bb50fdb6e6604e468c2a26c82a3e8f2fc8abf4bd1a2f3859708575ca3d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P64453.json", "taxon_id": "83333", "uniprot_accession": "P64453", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/toxin-ghot-ortt-pf10753.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10753", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/toxin-ghot-ortt-pf10753.yaml" } ], "pfam_ids": [ "PF10753" ], "protein_name": "Toxin GhoT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF", "sequence_length": 57, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "00a214b4a59e32f221837450cdf417bc40ad72d80791282385ff6e5b40d3cbe7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64646.json", "taxon_id": "83333", "uniprot_accession": "P64646", "uniprot_release": "2026_03" } ], "pfam_id": "PF10753", "short_name": "Toxin_GhoT_OrtT", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2569-pf10754.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10754", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2569-pf10754.yaml" } ], "pfam_ids": [ "PF10754" ], "protein_name": "Inner membrane protein YdgK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTFQTLGGQALTTQILWGVSFITAIALWYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAVKAFAFSPVEDGIAVRQLLFTLLATALIVPYFKRSSRVKATFVNP", "sequence_length": 146, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2e0d95dbe6e4234b19bc23ee9b7e0083805bc4956ce6f45e0779920eb4f4af86", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76180.json", "taxon_id": "83333", "uniprot_accession": "P76180", "uniprot_release": "2026_03" } ], "pfam_id": "PF10754", "short_name": "DUF2569", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2585-pf10755.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2585-pf10755.yaml" } ], "pfam_ids": [ "PF10755" ], "protein_name": "UPF0314 protein BBta_0150", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSADGIGMASRRSSGPWLVLVLALLVLQAAILFAMGRLPICACGTVKLWHGVVQSSENSQHLTDWYTFSHIIHGFLFYALTALVVPLLPWQGRLIIAMLIEGAWELVENSSFIIERYRAATISLDYFGDSVVNSIGDTLAMITGFLLARVLPIWLTVLIAIAFEIGVGLHIRDNLTLNILMLIYPTEAIRQWQAGPPLL", "sequence_length": 199, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6dcc825269e48e1d0d369620a6402903fe05cbe19ef6817bafb27c73e9ff10cb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5E8F3.json", "taxon_id": "288000", "uniprot_accession": "A5E8F3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sinorhizobium fredii (strain NBRC 101917 / NGR234)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2585-pf10755.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2585-pf10755.yaml" } ], "pfam_ids": [ "PF10755" ], "protein_name": "UPF0314 protein NGR_c32320", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIAAGTDDNRQRSTWIWLIACLGVVAIQILTQHLMGRLWICECGYVKLWEGVVNSSGNSQHISDWYTPSHIIHGFLFYGLGYLLLRGKPLSVRLLLATLIESAWEIAENTPMVINRYRSATISLDYFGDSILNSTMDTLAMAAGFLLASRLPVAVTVTIAIVLELFTGWIIRDNLTLNVLMLVWPLDAVKAWQAGL", "sequence_length": 197, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d29793e0cebdb6e5d51c6240b34010ad620fdb37a57d0010e5aa9a98aa6b622b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C3MAH2.json", "taxon_id": "394", "uniprot_accession": "C3MAH2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2585-pf10755.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2585-pf10755.yaml" } ], "pfam_ids": [ "PF10755" ], "protein_name": "UPF0314 protein Sala_3154", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVGGISRTGWLVAAALVALLAAILIFMGRPPICPCGTVSLWHGTVQSNQNSQQISDWYSFSHIIHGFIFYGVLRWIMPERALWVPLAIAIGTEGAWEILENSPLIIDRYREVTMAFGYSGDSVLNSVSDTLFMVAGFLAAGRMRWWVTAALAIAFELFTLWTIRDNLTLNVLMLVSPVEAIKDWQAGG", "sequence_length": 188, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dfa480d22f93b43d385a1762afc81c07405b20c4a7d2ed76e41da840133a3fd9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1GNB5.json", "taxon_id": "317655", "uniprot_accession": "Q1GNB5", "uniprot_release": "2026_03" } ], "pfam_id": "PF10755", "short_name": "DUF2585", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bph-6-pf10756.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10756", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bph-6-pf10756.yaml" } ], "pfam_ids": [ "PF10756" ], "protein_name": "Low molecular weight protein antigen 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAVRWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR", "sequence_length": 112, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "32175e3e2bbc0fc710fc335dd93dfba928416b7a87a49adc04f1e810e24bbf1a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WIR0.json", "taxon_id": "83331", "uniprot_accession": "P9WIR0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bph-6-pf10756.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10756", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bph-6-pf10756.yaml" } ], "pfam_ids": [ "PF10756" ], "protein_name": "Low molecular weight protein antigen 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAVRWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR", "sequence_length": 112, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "32175e3e2bbc0fc710fc335dd93dfba928416b7a87a49adc04f1e810e24bbf1a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WIR1.json", "taxon_id": "83332", "uniprot_accession": "P9WIR1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bph-6-pf10756.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10756", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bph-6-pf10756.yaml" } ], "pfam_ids": [ "PF10756" ], "protein_name": "Uncharacterized protein Rv1417", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAAPNDWDVVLRPHWTPLFAYAAAFLIAVAHVAGGLLLKVGSSGVVFQTADQVAMGALGLVLAGAVLLFARPRLRVGSAGLSVRNLLGDRIVGWSEVIGVSFPGGSRWARIDLADDEYIPVMAIQAVDKDRAVAAMDTVRSLLARYRPDLCAR", "sequence_length": 154, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dc3a3cbae5635802fe61cd0c2335b95ce5f287e5898535b465d4a2f63fce320c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLY1.json", "taxon_id": "83332", "uniprot_accession": "P9WLY1", "uniprot_release": "2026_03" } ], "pfam_id": "PF10756", "short_name": "bPH_6", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus phage HP1 (strain HP1c1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2586-pf10758.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10758", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2586-pf10758.yaml" } ], "pfam_ids": [ "PF10758", "PF29510" ], "protein_name": "Putative tail sheath protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFPSVQINALNQLSGETKEIERHALFVGVGTTNQGKLLALTPDSDFDKVFGETDTDLKKQVRAAMLNAGQNWFAHVYIAQEDGYDFVECVKKANQTASFEYCVNTRYLGVDKASIGKLQECYAELLAKFGRRTFFIQAVQGINHDQSDGETWDQYVQKLTTLQQTIVADHVCLVPLLFGNETGVLAGRLANRAVTVADSPARVQTGALVSLGSANKPLDKDGNELTLAHLKSLETARYSVPMWYPDYDGYYRADGRTLDVEGGDYQVIENLRVVDKVARKVRLLAIGKIADRSFNSTTSSTEYHKNYFAKPLRDMSKSATINGKDFPGECMPPKDDAITIVWQSKTKVTIYIKVRPYDCPKEITANIFLDLDSLGE", "sequence_length": 376, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "518274747c8154a41ca68d314dfdce3970038be63b6e72dafb8987be2a720854", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P51725.json", "taxon_id": "1289570", "uniprot_accession": "P51725", "uniprot_release": "2026_03" } ], "pfam_id": "PF10758", "short_name": "DUF2586", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bpa-pf10759.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10759", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bpa-pf10759.yaml" } ], "pfam_ids": [ "PF10759" ], "protein_name": "Bacterial proteasome activator", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTINPDDDNIEILTGAAGGADTEGEGEGEGKSLTDLVEQPAKVMRIGTMIKQLLEEVRAAPLDDASRNRLREIHQTSIRELEDGLAPELREELERLTLPFTDDNVPSDAELRIAQAQLVGWLEGLFHGIQTALFAQQMAARAQLEQMRQGALPPGIQVPGAQRGGATHPGTGQYL", "sequence_length": 175, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "831ff297a797fa17471371db4e244ce4f127232f399926f2dba8e1104d2d971a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0R5Z0.json", "taxon_id": "246196", "uniprot_accession": "A0R5Z0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bpa-pf10759.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10759", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bpa-pf10759.yaml" } ], "pfam_ids": [ "PF10759" ], "protein_name": "Bacterial proteasome activator", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVIGLSTGSDDDDVEVIGGVDPRLIAVQENDSDESSLTDLVEQPAKVMRIGTMIKQLLEEVRAAPLDEASRNRLRDIHATSIRELEDGLAPELREELDRLTLPFNEDAVPSDAELRIAQAQLVGWLEGLFHGIQTALFAQQMAARAQLQQMRQGALPPGVGKSGQHGHGTGQYL", "sequence_length": 174, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b7047d0a06c5b4828b5bbadbeb7e3c82e3d4a64d1e98c8b56b707e0b9e7d3b10", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKX2.json", "taxon_id": "83331", "uniprot_accession": "P9WKX2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bpa-pf10759.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10759", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bpa-pf10759.yaml" } ], "pfam_ids": [ "PF10759" ], "protein_name": "Bacterial proteasome activator", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVIGLSTGSDDDDVEVIGGVDPRLIAVQENDSDESSLTDLVEQPAKVMRIGTMIKQLLEEVRAAPLDEASRNRLRDIHATSIRELEDGLAPELREELDRLTLPFNEDAVPSDAELRIAQAQLVGWLEGLFHGIQTALFAQQMAARAQLQQMRQGALPPGVGKSGQHGHGTGQYL", "sequence_length": 174, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b7047d0a06c5b4828b5bbadbeb7e3c82e3d4a64d1e98c8b56b707e0b9e7d3b10", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKX3.json", "taxon_id": "83332", "uniprot_accession": "P9WKX3", "uniprot_release": "2026_03" } ], "pfam_id": "PF10759", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AD07", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10769" ], "protein_name": "Uncharacterized protein YecF", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4838ec388609bf102202f1840b5a41facf4f49db8f626361b833a448aae24bf1", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSTPDFSTAENNQELANEVSCLKAMLTLMLQAMGQADAGRVMLKMEKQLALIEDETQAAVFSKTVKQIKQAYRQ", "sequence_length": 74, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4838ec388609bf102202f1840b5a41facf4f49db8f626361b833a448aae24bf1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AD07.json", "taxon_id": "83333", "uniprot_accession": "P0AD07", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2594-pf10769.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2594-pf10769.yaml" } ], "pfam_ids": [ "PF10769" ], "protein_name": "Uncharacterized protein YecF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTPDFSTAENNQELANEVSCLKAMLTLMLQAMGQADAGRVMLKMEKQLALIEDETQAAVFSKTVKQIKQAYRQ", "sequence_length": 74, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4838ec388609bf102202f1840b5a41facf4f49db8f626361b833a448aae24bf1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AD08.json", "taxon_id": "199310", "uniprot_accession": "P0AD08", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2594-pf10769.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2594-pf10769.yaml" } ], "pfam_ids": [ "PF10769" ], "protein_name": "Uncharacterized protein YecF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTPDFSTAENNQELANEVSCLKAMLTLMLQAMGQADAGRVMLKMEKQLALIEDETQAAVFSKTVKQIKQAYRQ", "sequence_length": 74, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4838ec388609bf102202f1840b5a41facf4f49db8f626361b833a448aae24bf1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AD09.json", "taxon_id": "623", "uniprot_accession": "P0AD09", "uniprot_release": "2026_03" } ], "pfam_id": "PF10769", "short_name": "DUF2594", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2582-pf10771.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2582-pf10771.yaml" } ], "pfam_ids": [ "PF10771" ], "protein_name": "Uncharacterized protein MJ1608", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDMWGKIGETAGKIYHLLEGGEKSLSQIEKILRKEGYNSNIVKMAIGWLAREDKIFVLKDDKKWVIKLK", "sequence_length": 70, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bdb07604b8eb9f5fa08a8746d6e600d56a8a97dadcd7b0661edf570ebb837bad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q59003.json", "taxon_id": "243232", "uniprot_accession": "Q59003", "uniprot_release": "2026_03" } ], "pfam_id": "PF10771", "short_name": "DUF2582", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10772", "short_name": "Phage_HP1_Orf24", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4226-pf10774.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10774", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4226-pf10774.yaml" } ], "pfam_ids": [ "PF10774" ], "protein_name": "Uncharacterized protein MT0764", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLTRRAREVALTQHIGVSAETDRAVVPKLRQAYDSLVCGRRRLGAIGAEIENAVAHQRALGLDTPAGARNFSRFLATKAHDITRVLAATAAESQAGAARLRSLASSYQAVGFGPKPQEPPPDPVPFPPYQPKVWAACRARGQDPDKVVRTFHHAPMSARFRSLPAGDSVLYCGNDKYGLLHIQAKHGRQWHDIADARWPSAGNWRYLADYAIGATLAYPERVEYNQDNDTFAVYRRMSLPDGRYVFTTRVIISARDGKIITAFPQTT", "sequence_length": 268, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b19cdc165406ec33a2794585e37a1e6ea18ded929f1ca1788e0ecc9188bb079c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKS0.json", "taxon_id": "83331", "uniprot_accession": "P9WKS0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4226-pf10774.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10774", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4226-pf10774.yaml" } ], "pfam_ids": [ "PF10774" ], "protein_name": "Uncharacterized protein MT0028", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR", "sequence_length": 120, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6481a5242f9753e4993b7f4c6412ad730ba73135925c591ac0c7dbac0f8b1a40", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WMA0.json", "taxon_id": "83331", "uniprot_accession": "P9WMA0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4226-pf10774.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10774", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4226-pf10774.yaml" } ], "pfam_ids": [ "PF10774" ], "protein_name": "Uncharacterized protein Rv0025", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR", "sequence_length": 120, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6481a5242f9753e4993b7f4c6412ad730ba73135925c591ac0c7dbac0f8b1a40", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WMA1.json", "taxon_id": "83332", "uniprot_accession": "P9WMA1", "uniprot_release": "2026_03" } ], "pfam_id": "PF10774", "short_name": "DUF4226", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shouchella clausii", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2600-pf10776.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10776", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2600-pf10776.yaml" } ], "pfam_ids": [ "PF10776" ], "protein_name": "Trifunctional sesterterpene/triterpene/sesquarterpene synthase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTVPANPFKIIQLAFKETVPKAHAELQKWHQEALKIEDVEIREQAAWTVNDKTFHCEGGSIFALLAGENKDNHIQFLVAYQTICDYLDTLCDKNDAHDPNDFRSIHQALLDCLTPDKPYGDYYQYRDRFEDNGYLRKLVDACREATASFPGFADMQTHMQEVSQFYIDFQVYKHVEEEKREPLLKDFYERNKHFAPTMRWYEFACGTASTLALYCMAAYAAAPVQTAQGQQIKEAYFTWVQGVHILLDYFIDQEEDRQENEMNFVAYYRDSKEMFERFKYIDEKATEKLQMLPDKKFHLLLKTGLYALYLSDKKVMSHPRLKAEAKQLIKLGGFPASLFYYNRWIFKRKIS", "sequence_length": 352, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e41615c001e9c27625895b6306408ed6b64c42dc7fb5f83b134c5f767235eee", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/M5AW86.json", "taxon_id": "79880", "uniprot_accession": "M5AW86", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2600-pf10776.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10776", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2600-pf10776.yaml" } ], "pfam_ids": [ "PF10776" ], "protein_name": "Tetraprenyl-beta-curcumene synthase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVPEHPFGLMAKVYRDIFPLVHQELDIWKQKSESIHNSELKAQATASIRDKTFHCEGGGILALLSGSQKQKCVEFIIAYQTISDYLDNLCDRSTSLDPQDFRMLHASMQDALTVGAELQNYYQFREEQDDSGYLHELVKTCQRVLGSIEHYDMIKPYLLELCGYYCDLQVHKHVIEHERVPRLEKWFTQYESELPEMEWYEFSACAGSTLGIFCLVAYSFQPDFTESTAKKIRDSYFPYIQGLHILLDYLIDQEEDLLEGDLNFCSYYQSHEEMMDRLEHFIHKADEHLQGIPHENFHRLINRGLLGVYLSDDKVAGQKEMGRLAKKLIKASGKTSLFFYINGRAYRKFQKMSWMKNSKKKAQIIC", "sequence_length": 367, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "691c0b228dce59df51c2264fad62d6850e100a7c16e1d6eaa9d13e9e52273aff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34707.json", "taxon_id": "224308", "uniprot_accession": "O34707", "uniprot_release": "2026_03" } ], "pfam_id": "PF10776", "short_name": "DUF2600", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/zf-c2hcix2c-pf10782.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10782", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/zf-c2hcix2c-pf10782.yaml" } ], "pfam_ids": [ "PF10782" ], "protein_name": "Uncharacterized protein YpeQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKKMIFKELTELHDEYCKDCFIKKQFRKEFGKTYAHSFCINKCTVGEKLKQYGDVLTNH", "sequence_length": 60, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "456d4c07707b275e22614949f2666f9d6f89323af98789481f50d10b52acfbe5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54165.json", "taxon_id": "224308", "uniprot_accession": "P54165", "uniprot_release": "2026_03" } ], "pfam_id": "PF10782", "short_name": "zf-C2HCIx2C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2599-pf10783.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10783", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2599-pf10783.yaml" } ], "pfam_ids": [ "PF10783" ], "protein_name": "Uncharacterized protein Mb0487", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKALVAVSAVAVVALLGVSSAQADPEADPGAGEANYGGPPSSPRLVDHTEWAQWGSLPSLRVYPSQVGRTASRRLGMAAADAAWAEVLALSPEADTAGMRAQFICHWQYAEIRQPGKPSWNLEPWRPVVDDSEMLASGCNPGSPEESF", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "77640144e01f302c42c619efb19a6e1340dcbde2a501b96defd5311876fb73ba", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64698.json", "taxon_id": "233413", "uniprot_accession": "P64698", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2599-pf10783.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10783", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2599-pf10783.yaml" } ], "pfam_ids": [ "PF10783" ], "protein_name": "Uncharacterized protein MT0495", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKALVAVSAVAVVALLGVSSAQADPEADPGAGEANYGGPPSSPRLVDHTEWAQWGSLPSLRVYPSQVGRTASRRLGMAAADAAWAEVLALSPEADTAGMRAQFICHWQYAEIRQPGKPSWNLEPWRPVVDDSEMLASGCNPGSPEESF", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "77640144e01f302c42c619efb19a6e1340dcbde2a501b96defd5311876fb73ba", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKV8.json", "taxon_id": "83331", "uniprot_accession": "P9WKV8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2599-pf10783.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10783", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2599-pf10783.yaml" } ], "pfam_ids": [ "PF10783" ], "protein_name": "Uncharacterized protein Rv0477", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKALVAVSAVAVVALLGVSSAQADPEADPGAGEANYGGPPSSPRLVDHTEWAQWGSLPSLRVYPSQVGRTASRRLGMAAADAAWAEVLALSPEADTAGMRAQFICHWQYAEIRQPGKPSWNLEPWRPVVDDSEMLASGCNPGSPEESF", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "77640144e01f302c42c619efb19a6e1340dcbde2a501b96defd5311876fb73ba", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKV9.json", "taxon_id": "83332", "uniprot_accession": "P9WKV9", "uniprot_release": "2026_03" } ], "pfam_id": "PF10783", "short_name": "DUF2599", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Campylobacter fetus subsp. fetus (strain 82-40)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2603-pf10788.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10788", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2603-pf10788.yaml" } ], "pfam_ids": [ "PF10788" ], "protein_name": "UPF0763 protein CFF8240_1572", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNERLDNISNSLGISKRKRTLFELEQISDNEMKLIIKNGKLNLSVPWFGMSGNTPCTLVPAGLFEAIINTLKNAQKENFELKLEKSIWQHIPVDFGDVWSVAIDEIKKSKFKKEPNLDRVVKKIKKEHPNLFVDMQSLIQSKEN", "sequence_length": 145, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dd29b289b1fd4a3e727055d4e4869a15baafa18f7eaad4a225d247017e3f7f10", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0RR72.json", "taxon_id": "360106", "uniprot_accession": "A0RR72", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Helicobacter pylori (strain P12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2603-pf10788.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10788", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2603-pf10788.yaml" } ], "pfam_ids": [ "PF10788" ], "protein_name": "UPF0763 protein HPP12_0677", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKLPKKRVSKTKSQKLIHSLTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEEDKNYVLVPDNVISLLAENARKAFEARLRAELERDIITQAPIDFEDVREVSLQLLENLRQKDGNLPNINTLNFVKQIKKEHPNLFFNFDNMFKQPPFNENNFENFDNSDEENF", "sequence_length": 171, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "539219e6e153b17dd103cba88b0e1a19d69d33972560235f3421ce765d7d3c34", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B6JLQ2.json", "taxon_id": "570508", "uniprot_accession": "B6JLQ2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Helicobacter pylori (strain 51)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2603-pf10788.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10788", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2603-pf10788.yaml" } ], "pfam_ids": [ "PF10788" ], "protein_name": "UPF0763 protein KHP_0657", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKLPKKRVSKTKSQKLIHSLTTQKNRAFLKKISASEMLLELEKGAFKKNEAYFISDEEDKNYVLVPDNVISLLAENARKAFEARLRAELERDIITQAPIDFEDVREVSLQLLENLRQKDGNLPNINTLNFVKQIKKEHPNLFFNFDNMFKQPPFNENNFENFDNSDEENF", "sequence_length": 171, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "50f3fb6082eb9c920323af9adf9b0e7401ab2bfc027726a4112907aa68e162ed", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D0ISG9.json", "taxon_id": "290847", "uniprot_accession": "D0ISG9", "uniprot_release": "2026_03" } ], "pfam_id": "PF10788", "short_name": "DUF2603", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sinorhizobium fredii (strain NBRC 101917 / NGR234)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2604-pf10790.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10790", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2604-pf10790.yaml" } ], "pfam_ids": [ "PF10790" ], "protein_name": "Uncharacterized protein y4jI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPSGRSKTASPLTGRSAVVPWGRLASHWSMTMSKEAGKGDNHGGGPGKIEIIVVVNGQPTQVEANPNQPLHVVRTKALENTQNVAQPAENWEFKDEAGTLLDADKKIGDFGFANTGTLFLSLKAGVAGA", "sequence_length": 130, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "071bc9e4a7afcb931471e86e713105ebada26551b32b63f1bf54abc5bd681bfe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P55509.json", "taxon_id": "394", "uniprot_accession": "P55509", "uniprot_release": "2026_03" } ], "pfam_id": "PF10790", "short_name": "DUF2604", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2605-pf10792.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10792", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2605-pf10792.yaml" } ], "pfam_ids": [ "PF10792" ], "protein_name": "Uncharacterized protein slr0270", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MINPQPDEKELLKTILEPLLGDFEHWFSRSCQLLESQRLVFFTPEQQQELLDRVRQARDEVKCTKLMFQATGEQVGVEFSVLVPWHNLVTECWQVAQRHRQMQAAR", "sequence_length": 106, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2be7187f7fa50658ea2e9be5840ffeb4d23f2f7131cc73f89037615812440431", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P73889.json", "taxon_id": "1111708", "uniprot_accession": "P73889", "uniprot_release": "2026_03" } ], "pfam_id": "PF10792", "short_name": "DUF2605", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2606-pf10794.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10794", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2606-pf10794.yaml" } ], "pfam_ids": [ "PF10794" ], "protein_name": "Uncharacterized protein YbfJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYSTIFNIGQINKYSKLAIFMSILFLCGCSSQTHSSQKETTIPVTLHVEDAKGLPVEGVQVTIVKAPSSDEEPSTEIGEILGKTDKNGDIKWDTGRKGDYSVALTKGETSVTHHISLTEDKKDHAIPLVFKE", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "23a4525e7ce4f392c840dd0bd29ffa1bc31d6f4d5bc83fb2eabed431757fd3e1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31451.json", "taxon_id": "224308", "uniprot_accession": "O31451", "uniprot_release": "2026_03" } ], "pfam_id": "PF10794", "short_name": "DUF2606", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio alginolyticus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2607-pf10795.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10795", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2607-pf10795.yaml" } ], "pfam_ids": [ "PF10795" ], "protein_name": "Uncharacterized 11.6 kDa protein in scrR 3'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYHHQQKIRKHWHRTVLFFSVALLIAWNFAVILHQVDLTPEHHTHHHCQLFSGVQHGIAKAQPTLSTPTFTRIQYHDVFQRLVNSEDIRGAARAPPYFA", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3a7c2b17d12736722f990bf703226a57e3a0610c5686859a3f399954463b8692", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P24509.json", "taxon_id": "663", "uniprot_accession": "P24509", "uniprot_release": "2026_03" } ], "pfam_id": "PF10795", "short_name": "DUF2607", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2528-pf10800.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10800", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2528-pf10800.yaml" } ], "pfam_ids": [ "PF10800" ], "protein_name": "Lambda prophage-derived protein ea10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNIKKYIIDYDWKASIEIEIDHDVMTEEKLHQINNFWSDSEYRLNKHGSVLNAVLIMLAQHALLIAISSDLNAYGVVCEFDWNDGNGQEGWPPMDGSEGIRITDIDTSGIFDSDDMTIKAA", "sequence_length": 122, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "27e8822fb188050d234fc8a34c46a8251e6842523121debfdde5d4dc042c0a72", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P68657.json", "taxon_id": "199310", "uniprot_accession": "P68657", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage lambda", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2528-pf10800.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10800", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2528-pf10800.yaml" } ], "pfam_ids": [ "PF10800" ], "protein_name": "Protein ea10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNIKKYIIDYDWKASIEIEIDHDVMTEEKLHQINNFWSDSEYRLNKHGSVLNAVLIMLAQHALLIAISSDLNAYGVVCEFDWNDGNGQEGWPPMDGSEGIRITDIDTSGIFDSDDMTIKAA", "sequence_length": 122, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "27e8822fb188050d234fc8a34c46a8251e6842523121debfdde5d4dc042c0a72", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P68658.json", "taxon_id": "2681611", "uniprot_accession": "P68658", "uniprot_release": "2026_03" } ], "pfam_id": "PF10800", "short_name": "DUF2528", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2537-pf10801.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10801", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2537-pf10801.yaml" } ], "pfam_ids": [ "PF10801" ], "protein_name": "Uncharacterized protein Mb0906", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNDQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTPVLRWFVLGAAVGVAGAWLALLALTLGDG", "sequence_length": 94, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c62c626fa59dd54a0089366045d7236044759fe3f0ed6e7c4c24d606fec6ed39", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64738.json", "taxon_id": "233413", "uniprot_accession": "P64738", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2537-pf10801.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10801", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2537-pf10801.yaml" } ], "pfam_ids": [ "PF10801" ], "protein_name": "Uncharacterized protein MT0905", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNDQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTPVLRWFVLGAAVGVAGAWLALLALTLGDG", "sequence_length": 94, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c62c626fa59dd54a0089366045d7236044759fe3f0ed6e7c4c24d606fec6ed39", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKQ8.json", "taxon_id": "83331", "uniprot_accession": "P9WKQ8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2537-pf10801.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10801", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2537-pf10801.yaml" } ], "pfam_ids": [ "PF10801" ], "protein_name": "Uncharacterized protein Rv0882", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNDQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTPVLRWFVLGAAVGVAGAWLALLALTLGDG", "sequence_length": 94, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c62c626fa59dd54a0089366045d7236044759fe3f0ed6e7c4c24d606fec6ed39", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKQ9.json", "taxon_id": "83332", "uniprot_accession": "P9WKQ9", "uniprot_release": "2026_03" } ], "pfam_id": "PF10801", "short_name": "DUF2537", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2540-pf10802.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10802", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2540-pf10802.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/ribbon-helix-helix-ipr010985.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010985", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/ribbon-helix-helix-ipr010985.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/uncharacterised-protein-pf10802-duf2540-3-30-70-3260.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.70.3260", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/uncharacterised-protein-pf10802-duf2540-3-30-70-3260.yaml" } ], "pfam_ids": [ "PF10802" ], "protein_name": "Uncharacterized protein MJ0366", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLVGFMKEKKRATFYLYKNIDGRKLRYLLHKLENVENVDIDTLRRAIEAEKKYKRSITLTEEEEVIIQRLGKSANLLLNCELVKLDEGERA", "sequence_length": 92, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a3629d4fe78a51a7dd1f4b562f21d51a654dcad9d3ea5d05cdbbbec3b6b0937d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57812.json", "taxon_id": "243232", "uniprot_accession": "Q57812", "uniprot_release": "2026_03" } ], "pfam_id": "PF10802", "short_name": "DUF2540", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gerpb-pf10803.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10803", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gerpb-pf10803.yaml" } ], "pfam_ids": [ "PF10803" ], "protein_name": "Probable spore germination protein GerPB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNFYINQTIQINYLRLESISNSSILQIGSAGSIKSLSNLYNTGSYVEPAPEVSGSGQPLQLQEPDTGSLVPLQPPGR", "sequence_length": 77, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e22319c0adf38a6e5f2aa15394d259193043cd341dbdaba71da10d5063dc32de", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O06720.json", "taxon_id": "224308", "uniprot_accession": "O06720", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gerpb-pf10803.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10803", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gerpb-pf10803.yaml" } ], "pfam_ids": [ "PF10803" ], "protein_name": "Probable spore germination protein GerPB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNFYVNQSIIINSIKIDSITTSSVFQIGTAGSIKALSKFSNTGGFTEPLRPLQAKGQIISIKPSTSSS", "sequence_length": 68, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "049f8bbdf56ba1a1234ef69f81d9bc7684d0b7400e35acd183452cf42665b490", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A3T6.json", "taxon_id": "226900", "uniprot_accession": "P0A3T6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus cereus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gerpb-pf10803.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10803", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gerpb-pf10803.yaml" } ], "pfam_ids": [ "PF10803" ], "protein_name": "Probable spore germination protein GerPB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNFYVNQSIIINSIKIDSITTSSVFQIGTAGSIKALSKFSNTGGFTEPLRPLQAKGQIISIKPSTSSS", "sequence_length": 68, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "049f8bbdf56ba1a1234ef69f81d9bc7684d0b7400e35acd183452cf42665b490", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A3T7.json", "taxon_id": "1396", "uniprot_accession": "P0A3T7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10803", "short_name": "GerPB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain N315)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2538-pf10804.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10804", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2538-pf10804.yaml" } ], "pfam_ids": [ "PF10804" ], "protein_name": "Uncharacterized protein SA0907", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDNPIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTDVNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL", "sequence_length": 156, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "041c94209d8a1b89399350b326f4c34bff9df6ddf33d625e11b765cb0a868dfc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A0Q2.json", "taxon_id": "158879", "uniprot_accession": "P0A0Q2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain MW2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2538-pf10804.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10804", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2538-pf10804.yaml" } ], "pfam_ids": [ "PF10804" ], "protein_name": "Uncharacterized protein MW0938", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDNPIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTDVNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL", "sequence_length": 156, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "041c94209d8a1b89399350b326f4c34bff9df6ddf33d625e11b765cb0a868dfc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A0Q3.json", "taxon_id": "196620", "uniprot_accession": "P0A0Q3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain USA300)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2538-pf10804.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10804", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2538-pf10804.yaml" } ], "pfam_ids": [ "PF10804" ], "protein_name": "Uncharacterized protein SAUSA300_0957", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDNPIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTDVNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL", "sequence_length": 156, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "041c94209d8a1b89399350b326f4c34bff9df6ddf33d625e11b765cb0a868dfc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2FI23.json", "taxon_id": "367830", "uniprot_accession": "Q2FI23", "uniprot_release": "2026_03" } ], "pfam_id": "PF10804", "short_name": "DUF2538", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2730-pf10805.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10805", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2730-pf10805.yaml" } ], "pfam_ids": [ "PF10805" ], "protein_name": "Uncharacterized protein HI_1498", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWLAHSHYTLACESIRSPLCKLPARLGGRTMISEFWEFVRSNFGVISTLIAIFIGAFWLKLDSKYAKKHDLSQLADIARSHDNRLATLESKVENLPTAVDVERLKTLLTDVKGDTKATSRQVDAMSHQVGLLLEAKLKE", "sequence_length": 139, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "674f6594e58d6e298eb76ac43ed58eb20d4e18a6c756560d526dddc11747cba0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44222.json", "taxon_id": "71421", "uniprot_accession": "P44222", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage Mu", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2730-pf10805.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10805", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2730-pf10805.yaml" } ], "pfam_ids": [ "PF10805" ], "protein_name": "Releasin protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLISVLALWPYLLPVVAGGAVWAMRRSFASTERVERLENRMTEMETRYASIPGTEDVHEMRLRIAELSGDIRVLSQRVQSFSHQLELLLENAVNRSNS", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d260906adfc11f1fc7c11c4373683aa8d4027bb9a9b2c90455d2386c6a4b9ced", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9T1W9.json", "taxon_id": "2681603", "uniprot_accession": "Q9T1W9", "uniprot_release": "2026_03" } ], "pfam_id": "PF10805", "short_name": "DUF2730", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sam35-pf10806.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10806", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sam35-pf10806.yaml" } ], "pfam_ids": [ "PF10806" ], "protein_name": "Sorting assembly machinery 35 kDa subunit", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSSFSVPMPVKRIFDTFPLQTYAAQTDKDEAVALEIQRRSYTFTERGGGSSELTVEGTYKLGVYNVFLEANTGAALATDPWCLFVQLALCQKNGLVLPTHSQEQTPSHTCNHEMLVLSRLSNPDEALPILVEGYKKRIIRSTVAISEIMRSRILDDAEQLMYYTLLDTVLYDCWITQIIFCASDAQFMELYSCQKLSGSIVTPLDVENSLLQKLSAKSLKISLTKRNKFQFRHREIVKSMQGVYHNHHNSVNQEQVLNVLFENSKQVLLGLKDMLKSDGQPTYLHLKIASYILCITNVKEPIKLKTFVENECKELVQFAQDTLKNFVQ", "sequence_length": 329, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "46a81631d8887eea7a9e31fe96a4373b8ea6c84d94a9b2a154be2c9fd0d261fc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P14693.json", "taxon_id": "559292", "uniprot_accession": "P14693", "uniprot_release": "2026_03" } ], "pfam_id": "PF10806", "short_name": "SAM35", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O1:K1 / APEC", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2541-pf10807.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10807", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2541-pf10807.yaml" } ], "pfam_ids": [ "PF10807" ], "protein_name": "UPF0412 protein YaaI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSVITISASLAISLMLCCTAQANDHKILGVIAMPRNETNDLALKLPVCRIVKRIQLSADHGDLQLSGASIYFKATRSASQTLNIPSEIKEEQTTDWININSDNDNKRCVSKITFSGHTVNSSDMATLKIIGDD", "sequence_length": 134, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d3aa6702a280ea0aeb75f61b712e9e48bd5c1940858dc2cb1432e4e3cd2979d1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1A765.json", "taxon_id": "405955", "uniprot_accession": "A1A765", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2541-pf10807.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10807", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2541-pf10807.yaml" } ], "pfam_ids": [ "PF10807" ], "protein_name": "UPF0412 protein YaaI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSVFTISASLAISLMLCCTAQANDHKILGVIAMPRNETNDLALKLPVCRIVKRIQLSADHGDLQLSGASVYFKAARSASQSLNIPSEIKEGQTTDWININSDNDNKRCVSKITFSGHTVNSSDMATLKIIGDD", "sequence_length": 134, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "47c0e4300db767ec43cb10ecf9e43b65812245648355390cd57f8a4ffed775a5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B1IRG1.json", "taxon_id": "481805", "uniprot_accession": "B1IRG1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/duf2541-family-protein-nf007541.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007541", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/duf2541-family-protein-nf007541.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2541-pf10807.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10807", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2541-pf10807.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P28696", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10807" ], "protein_name": "UPF0412 protein YaaI", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "2a80985ff362876955823467e8cd77e4620e32ced98535cf03bf5d28198ae05e", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKSVFTISASLAISLMLCCTAQANDHKLLGAIAMPRNETNDLALKLPVCRIVKRIQLSADHGDLQLSGASVYFKAARSASQSLNIPSEIKEGQTTDWININSDNDNKRCVSKITFSGHTVNSSDMATLKIIGDD", "sequence_length": 134, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2a80985ff362876955823467e8cd77e4620e32ced98535cf03bf5d28198ae05e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P28696.json", "taxon_id": "83333", "uniprot_accession": "P28696", "uniprot_release": "2026_03" } ], "pfam_id": "PF10807", "short_name": "DUF2541", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2542-pf10808.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10808", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2542-pf10808.yaml" } ], "pfam_ids": [ "PF10808" ], "protein_name": "Uncharacterized protein YeiS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVAYIGFGILSIGMIVYLIFYR", "sequence_length": 79, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95ae63a555f16a7639b19643f3db89fae99d0d2e144f984f6031037d1610636b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64536.json", "taxon_id": "83333", "uniprot_accession": "P64536", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2542-pf10808.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10808", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2542-pf10808.yaml" } ], "pfam_ids": [ "PF10808" ], "protein_name": "Uncharacterized protein YeiS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVAYIGFGILSIGMIVYLIFYR", "sequence_length": 79, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95ae63a555f16a7639b19643f3db89fae99d0d2e144f984f6031037d1610636b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64537.json", "taxon_id": "199310", "uniprot_accession": "P64537", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2542-pf10808.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10808", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2542-pf10808.yaml" } ], "pfam_ids": [ "PF10808" ], "protein_name": "Uncharacterized protein YeiS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVAYIGFGILSIGMIVYLIFYR", "sequence_length": 79, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95ae63a555f16a7639b19643f3db89fae99d0d2e144f984f6031037d1610636b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64539.json", "taxon_id": "623", "uniprot_accession": "P64539", "uniprot_release": "2026_03" } ], "pfam_id": "PF10808", "short_name": "DUF2542", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage 186", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2732-pf10809.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10809", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2732-pf10809.yaml" } ], "pfam_ids": [ "PF10809" ], "protein_name": "Uncharacterized 8.8 kDa protein in GpA 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRTIYLSTPSGAGDHLLESLFKEAKKEERKDRRLAVSIRLEDLAVHITNSDMTGKEAAELLRREATRFENESQELH", "sequence_length": 77, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5a694ee3fd0339292c24180db9f22f0ee2da26ea317087ea9f9982894ae2610f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P21682.json", "taxon_id": "29252", "uniprot_accession": "P21682", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage P2", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2732-pf10809.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10809", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2732-pf10809.yaml" } ], "pfam_ids": [ "PF10809" ], "protein_name": "Uncharacterized 8.3 kDa protein in GpA 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHTVSENQCGIYALLLQQARTEAQADAATRFSSHLDAMIRHITKAELSRVEIVELLSQESEKFHNIGLSRGEVL", "sequence_length": 74, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "657af380cf9b1b8947d014c0d3df7ffb64c414ab5fd80bae989cb0ebdd8475ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06422.json", "taxon_id": "2905681", "uniprot_accession": "Q06422", "uniprot_release": "2026_03" } ], "pfam_id": "PF10809", "short_name": "DUF2732", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2545-pf10810.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10810", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2545-pf10810.yaml" } ], "pfam_ids": [ "PF10810" ], "protein_name": "Uncharacterized protein YfdY", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIFMFLAPACGLMIRFMVGYGRR", "sequence_length": 80, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "321d01bae4594c26ec8fb874d6431e8ab8838b8bf3435e5f4fb20feb95071436", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76521.json", "taxon_id": "83333", "uniprot_accession": "P76521", "uniprot_release": "2026_03" } ], "pfam_id": "PF10810", "short_name": "DUF2545", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2532-pf10811.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10811", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2532-pf10811.yaml" } ], "pfam_ids": [ "PF10811" ], "protein_name": "Uncharacterized protein RP458", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIKLVTYFLILVSSLKVNADLNHIQDSFKYQEAEQLTIELPWNDCTAIHKFLEEKLFFSEQQIKKENKIHEKYKQFYLQHNNKLSDFSMQFLEKKSEINSVETLISGFLKFCEDNFQTSKSKSHSLNFFQKQQDQWLHNIRNENYKTYYKKKYEDNTFRNIN", "sequence_length": 163, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f248490050c987c98b6b52c1d3851aada434a4ce59ed81bd1d52abcbf7b6748d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZD85.json", "taxon_id": "272947", "uniprot_accession": "Q9ZD85", "uniprot_release": "2026_03" } ], "pfam_id": "PF10811", "short_name": "DUF2532", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2561-pf10812.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10812", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2561-pf10812.yaml" } ], "pfam_ids": [ "PF10812" ], "protein_name": "Uncharacterized protein MT2253", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNPHTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAVAESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPSWISYGLAGVVTAGMPVIEWLYARQLRRVVAPQSS", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "29e68a6bff348655f5b2a38e4b7b0cd1c07157fcc24364f94e816c028fdfad1f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLI8.json", "taxon_id": "83331", "uniprot_accession": "P9WLI8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2561-pf10812.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10812", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2561-pf10812.yaml" } ], "pfam_ids": [ "PF10812" ], "protein_name": "Uncharacterized protein Rv2197c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNPHTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAVAESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPSWISYGLAGVVTAGMPVIEWLYARQLRRVVAPQSS", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "29e68a6bff348655f5b2a38e4b7b0cd1c07157fcc24364f94e816c028fdfad1f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLI9.json", "taxon_id": "83332", "uniprot_accession": "P9WLI9", "uniprot_release": "2026_03" } ], "pfam_id": "PF10812", "short_name": "DUF2561", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human herpesvirus 8 type P (isolate GK18)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/herpesvir-ul11-pf10813.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10813", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/herpesvir-ul11-pf10813.yaml" } ], "pfam_ids": [ "PF10813" ], "protein_name": "Cytoplasmic envelopment protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFLLSICKRPSQPVDVDGEPLDVVVDYDPIRVSEKGMLLEQSQSPYPALKKKKKNKEAIY", "sequence_length": 61, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0cd470086fbd02df0649cda80b725201a00c8e30200069ead8b4a85d7d70d1d2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F5HHY1.json", "taxon_id": "868565", "uniprot_accession": "F5HHY1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Alcelaphine herpesvirus 1 (strain C500)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/herpesvir-ul11-pf10813.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10813", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/herpesvir-ul11-pf10813.yaml" } ], "pfam_ids": [ "PF10813" ], "protein_name": "Cytoplasmic envelopment protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSYISVCCWRRHSIKDVHGNDINIAEDFEAFSEGEALLTEKTPTPPLPVYNDNFEDDE", "sequence_length": 59, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cb265d1bdc5e160f5ab0e92ef627e03a03fe5abb4f804ef7fba0c5b1c88c0f57", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O36387.json", "taxon_id": "654901", "uniprot_accession": "O36387", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Epstein-Barr virus (strain B95-8)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/herpesvir-ul11-pf10813.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10813", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/herpesvir-ul11-pf10813.yaml" } ], "pfam_ids": [ "PF10813" ], "protein_name": "Cytoplasmic envelopment protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGALWSLCRRRVNSIGDVDGGIINLYNDYEEFNLETTKLIAAEEGRACGETNEGLEYDEDSENDELLFLPNKKPN", "sequence_length": 75, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8aa2d9d52b242cd2a49eb09c26782f7fd83fcfdcb1a4332d340abbd96471ea55", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0CK51.json", "taxon_id": "10377", "uniprot_accession": "P0CK51", "uniprot_release": "2026_03" } ], "pfam_id": "PF10813", "short_name": "Herpesvir_UL11", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cwsa-pf10814.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10814", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cwsa-pf10814.yaml" } ], "pfam_ids": [ "PF10814" ], "protein_name": "Cell wall synthesis protein CwsA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPARADVRLAPRQRLTRGLKYTAVGPVDITRGVLGIGADTAQATAAELRRRYASGKLQRQLAAAAEAVAALPETIQEAVQEVVSPPKKRRRRPLLIAAVAVTVLGGGAAAFSIVRRRSRPQEPPTLAPSVEVAPKP", "sequence_length": 136, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1cec6cbde6c998064b649c3158097f6a94a2f118821347755e9db4cbf9132d74", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0QNF5.json", "taxon_id": "246196", "uniprot_accession": "A0QNF5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cwsa-pf10814.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10814", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cwsa-pf10814.yaml" } ], "pfam_ids": [ "PF10814" ], "protein_name": "Cell wall synthesis protein CwsA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGRLAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVAFSIVRRSSRPEPSPRPPSVEVQPRP", "sequence_length": 145, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a111697ee4818fd35156fcb40a811781faecc1bf3f9f42e81175a88be0136eba", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P59977.json", "taxon_id": "233413", "uniprot_accession": "P59977", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cwsa-pf10814.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10814", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cwsa-pf10814.yaml" } ], "pfam_ids": [ "PF10814" ], "protein_name": "Cell wall synthesis protein CwsA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGRLAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVAFSIVRRSSRPEPSPRPPSVEVQPRS", "sequence_length": 145, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "120c6f2dca2018459e54f2aee44203fa8d92dc94928529eb8f43a770ac3812d6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WJF3.json", "taxon_id": "83332", "uniprot_accession": "P9WJF3", "uniprot_release": "2026_03" } ], "pfam_id": "PF10814", "short_name": "CwsA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10816", "short_name": "DUF2760", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2563-pf10817.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10817", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2563-pf10817.yaml" } ], "pfam_ids": [ "PF10817" ], "protein_name": "Uncharacterized protein Mb2104", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFVDVGLLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQMRNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSCAT", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0c8e04e1861cc6c414627dc03ef31fe7fbc7536edb39bb4b4f850625a15ed2d3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P59982.json", "taxon_id": "233413", "uniprot_accession": "P59982", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2563-pf10817.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10817", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2563-pf10817.yaml" } ], "pfam_ids": [ "PF10817" ], "protein_name": "Uncharacterized protein MT2139", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFVDVGLLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQMRNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSCAT", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0c8e04e1861cc6c414627dc03ef31fe7fbc7536edb39bb4b4f850625a15ed2d3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLK8.json", "taxon_id": "83331", "uniprot_accession": "P9WLK8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2563-pf10817.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10817", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2563-pf10817.yaml" } ], "pfam_ids": [ "PF10817" ], "protein_name": "Uncharacterized protein Rv2078", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFVDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQMRNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSCAT", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b743e872527274f0592686300bcad84cade0a706d44c2815f5f685da25d989f2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLK9.json", "taxon_id": "83332", "uniprot_accession": "P9WLK9", "uniprot_release": "2026_03" } ], "pfam_id": "PF10817", "short_name": "DUF2563", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10818", "short_name": "SecM_small", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2564-pf10819.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2564-pf10819.yaml" } ], "pfam_ids": [ "PF10819" ], "protein_name": "Uncharacterized protein YpzA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSEFHNEDQTGFTDKRQLELAVETAQKTTGAATRGQSKTLVDSAYQAIEDARELSQSEELAALDDPEFVKQQQQLLDDSEHQLDEFKE", "sequence_length": 89, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c1bca00e18702a1d26d752737f56b943eea97f773f3add1fbc161146bff23cf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32007.json", "taxon_id": "224308", "uniprot_accession": "O32007", "uniprot_release": "2026_03" } ], "pfam_id": "PF10819", "short_name": "DUF2564", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2543-pf10820.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10820", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2543-pf10820.yaml" } ], "pfam_ids": [ "PF10820" ], "protein_name": "Uncharacterized protein YmjA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNHDIPLKYFDIADEYATECAEPVAEAERTPLAHYFQLLLTRLMNNEEISEEAQHEMAAEAGINPVRIDEIAEFLNQWGNE", "sequence_length": 81, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e5e1ba37f154615dc8c2c29b4daa34e70eded20f8713be3469568996803bc775", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ACV8.json", "taxon_id": "83333", "uniprot_accession": "P0ACV8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2543-pf10820.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10820", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2543-pf10820.yaml" } ], "pfam_ids": [ "PF10820" ], "protein_name": "Uncharacterized protein YmjA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNHDIPLKYFDIADEYATECAEPVAEAERTPLAHYFQLLLTRLMNNEEISEEAQHEMAAEAGINPVRIDEIAEFLNQWGNE", "sequence_length": 81, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e5e1ba37f154615dc8c2c29b4daa34e70eded20f8713be3469568996803bc775", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ACV9.json", "taxon_id": "623", "uniprot_accession": "P0ACV9", "uniprot_release": "2026_03" } ], "pfam_id": "PF10820", "short_name": "DUF2543", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2567-pf10821.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10821", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2567-pf10821.yaml" } ], "pfam_ids": [ "PF10821" ], "protein_name": "Uncharacterized protein MT1626", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLGLSATGVLVGGLWAWIAPPIHAVVAITRAGERVHEYLGSESQNFFIAPFMLLGLLSVLAVVASALMWQWREHRGPQMVAGLSIGLTTAAAIAAGVGALVVRLRYGALDFDTVPLSRGDHALTYVTQAPPVFFARRPLQIALTLMWPAGIASLVYALLAAGTARDDLGGYPAVDPSSNARTEALETPQAPVS", "sequence_length": 193, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87256441aabcc47e886241cb3bbcbc0cd1953f2e615b750ee41ecd3e03bc1d98", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLT4.json", "taxon_id": "83331", "uniprot_accession": "P9WLT4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2567-pf10821.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10821", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2567-pf10821.yaml" } ], "pfam_ids": [ "PF10821" ], "protein_name": "Uncharacterized protein Rv1591", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLGLSATGVLVGGLWAWIAPPIHAVVAITRAGERVHEYLGSESQNFFIAPFMLLGLLSVLAVVASALMWQWREHRGPQMVAGLSIGLTTAAAIAAGVGALVVRLRYGALDFDTVPLSRGDHALTYVTQAPPVFFARRPLQIALTLMWPAGIASLVYALLAAGTARDDLGGYPAVDPSSNARTEALETPQAPVS", "sequence_length": 193, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87256441aabcc47e886241cb3bbcbc0cd1953f2e615b750ee41ecd3e03bc1d98", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLT5.json", "taxon_id": "83332", "uniprot_accession": "P9WLT5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium leprae (strain TN)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2567-pf10821.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10821", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2567-pf10821.yaml" } ], "pfam_ids": [ "PF10821" ], "protein_name": "Uncharacterized protein ML1222", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTEHCASDISDVSCPPRGRVIVGVVLGLAGTGALIGGLWAWIAPPIHAVVGLTRTGERGHDYLGNESEHFFVAPCLMLGLLTVLAVTASVLAWQLRQHRGPGMVIGLAIGLMICAATAAAVGALLVWMRYGALNFDAVPLSYDHKVAHVIQAPPVFFAHGLLQVAATVLWPAGIAALVYAVLAAANGRDDLGGRLCSR", "sequence_length": 198, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b948c1286c6f3b15dda85f1a96b78469aea015a4ddd8f3fb045ea34cc6779439", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q49626.json", "taxon_id": "272631", "uniprot_accession": "Q49626", "uniprot_release": "2026_03" } ], "pfam_id": "PF10821", "short_name": "DUF2567", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2568-pf10823.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2568-pf10823.yaml" } ], "pfam_ids": [ "PF10823" ], "protein_name": "Uncharacterized protein YrdB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKLNQTNLLLRFTLEIAALISLGVYAWISFNGYFKYVLTLVLPIAVMIVWSVFAVPHDPSRSGQTVIAVNGVTRLVIELLIFAMAVAALYFSYLKPVSIVFLCLIILHYIISAERIKWLLNQ", "sequence_length": 123, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "930128f6cd9d68bfbd3988464cd7f97bc66d8c8018f54554e61fb088d741f8ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O07080.json", "taxon_id": "224308", "uniprot_accession": "O07080", "uniprot_release": "2026_03" } ], "pfam_id": "PF10823", "short_name": "DUF2568", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10824", "short_name": "T7SS_ESX_EspC", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10825", "short_name": "DUF2752", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2551-pf10826.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10826", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2551-pf10826.yaml" } ], "pfam_ids": [ "PF10826" ], "protein_name": "Uncharacterized protein AF_1218", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNGEVESRLRKYLERDKNGLRRELLRVLLEGKKFTTSEIHDILSRRGYSISPRGVSAMVGLISARLGILKTELGEKNRYYLKSEYADLVRKIVEEFE", "sequence_length": 97, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8d042bf7d8e1a383c2118a2e076a3e80ee0de4bae8d78d7352e777267aa685a2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O29050.json", "taxon_id": "224325", "uniprot_accession": "O29050", "uniprot_release": "2026_03" } ], "pfam_id": "PF10826", "short_name": "DUF2551", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2552-pf10827.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10827", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2552-pf10827.yaml" } ], "pfam_ids": [ "PF10827" ], "protein_name": "Uncharacterized protein YqkC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEQKLKAMKNTAQNKTWVSFLNQNHPYTLLHWSIGGAESIKKDVWLLQDEMTFETQEFTTIDLAIEWIRENMDGITDVL", "sequence_length": 79, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "03f5d6e01517b23c3ba101d58dc21e4c7402912241098b9646782e278c911257", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54566.json", "taxon_id": "224308", "uniprot_accession": "P54566", "uniprot_release": "2026_03" } ], "pfam_id": "PF10827", "short_name": "DUF2552", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2570-pf10828.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10828", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2570-pf10828.yaml" } ], "pfam_ids": [ "PF10828" ], "protein_name": "Uncharacterized protein HI_1414", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKYIYIALVGVVVVLFGALRYQSSVIDELEITTKQQEDTNKSLSLALQQERNDEIERIATENAESVKTIIKTQPCAHTRLPQSVLDRLHE", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "36df6fe98150453b46457c36a56b44cd5d493a2f1e46f52407b5b99ccd4e9074", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44186.json", "taxon_id": "71421", "uniprot_accession": "P44186", "uniprot_release": "2026_03" } ], "pfam_id": "PF10828", "short_name": "DUF2570", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2554-pf10829.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10829", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2554-pf10829.yaml" } ], "pfam_ids": [ "PF10829" ], "protein_name": "Uncharacterized protein YncJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFTKALSVVLLTCALFSGQLMAGHKGHEFVWVKNVDHQLRHEADSDELRAVAEESAEGLREHFYWQKSRKPEAGQR", "sequence_length": 76, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "216c4ae4d0cd8d2d6db0310b88c97c0cbe5bb61148c09449157abe92a7f6be6c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64459.json", "taxon_id": "83333", "uniprot_accession": "P64459", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2554-pf10829.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10829", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2554-pf10829.yaml" } ], "pfam_ids": [ "PF10829" ], "protein_name": "Uncharacterized protein YncJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFTKALSVVLLTCALFSGQLMAGHKGHEFVWVKNVDHQLRHEADSDELRAVAEESAEGLREHFYWQKSRKPEAGQR", "sequence_length": 76, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "216c4ae4d0cd8d2d6db0310b88c97c0cbe5bb61148c09449157abe92a7f6be6c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64460.json", "taxon_id": "83334", "uniprot_accession": "P64460", "uniprot_release": "2026_03" } ], "pfam_id": "PF10829", "short_name": "DUF2554", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2553-pf10830.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10830", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2553-pf10830.yaml" } ], "pfam_ids": [ "PF10830" ], "protein_name": "Uncharacterized protein YusG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFDKQKLDVTNDVTGRFQNGRLSLYHDNEMIGQMTSMNEYELKSGYSFENEKFYKTADVVSGDDAKYVDCDYENGWC", "sequence_length": 78, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "07dd7cbfdc7aee7fd91fb87639381361cde203d9e2f9549d798c2a15aa384431", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32173.json", "taxon_id": "224308", "uniprot_accession": "O32173", "uniprot_release": "2026_03" } ], "pfam_id": "PF10830", "short_name": "DUF2553", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2556-pf10831.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2556-pf10831.yaml" } ], "pfam_ids": [ "PF10831" ], "protein_name": "Inner membrane protein YhdU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIRKYWWLVVFAVFVFLFDTLLMQWIELLATETDKCRNMNSVNPLKLVNCDELNFQDRM", "sequence_length": 59, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "02bff8e4ea05681127fe095bf0371bf4a2da6511ba3c583d25ec416970662694", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64619.json", "taxon_id": "83333", "uniprot_accession": "P64619", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2556-pf10831.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2556-pf10831.yaml" } ], "pfam_ids": [ "PF10831" ], "protein_name": "Uncharacterized protein YhdU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIRKYWWLVVFAVFVFLFDTLLMQWIELLATETDKCRNMNSVNPLKLVNCDELNFQDRM", "sequence_length": 59, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "02bff8e4ea05681127fe095bf0371bf4a2da6511ba3c583d25ec416970662694", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64620.json", "taxon_id": "199310", "uniprot_accession": "P64620", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2556-pf10831.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2556-pf10831.yaml" } ], "pfam_ids": [ "PF10831" ], "protein_name": "Uncharacterized protein YhdU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIRKYWWLVVFAVFVFLFDTLLMQWIELLATETDKCRNMNSVNPLKLVNCDELNFQDRM", "sequence_length": 59, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "02bff8e4ea05681127fe095bf0371bf4a2da6511ba3c583d25ec416970662694", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64621.json", "taxon_id": "83334", "uniprot_accession": "P64621", "uniprot_release": "2026_03" } ], "pfam_id": "PF10831", "short_name": "DUF2556", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf007573.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007573", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf007573.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yhfg-pf10832.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10832", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yhfg-pf10832.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0ADX5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10832" ], "protein_name": "Uncharacterized protein YhfG", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7803bff0623245947efb5815dba6777c12a3a8310ebf46572c13e21452953ad9", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALARLEELRSHYER", "sequence_length": 55, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7803bff0623245947efb5815dba6777c12a3a8310ebf46572c13e21452953ad9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADX5.json", "taxon_id": "83333", "uniprot_accession": "P0ADX5", "uniprot_release": "2026_03" } ], "pfam_id": "PF10832", "short_name": "YhfG", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2572-pf10833.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2572-pf10833.yaml" } ], "pfam_ids": [ "PF10833" ], "protein_name": "Uncharacterized protein HI_0940", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIQKGIITLTILIFISGLLTAFLLLDDSHLSFFRAQQNQRKHYVERTLQLQKMTATKKQTACLDLPLNNNESVKQISIALEGSTDAIQYFLWCERMSLFKKSPKKGDNQGALKDFVTDEKLAYFRPHFSSPPRILNANKMPKLYWFSDSQAEVEINGTVSAVLIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE", "sequence_length": 227, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1733ce27d680c5b2cb53a58484ee3273df2f2c1dc2619b3c762ffd61deb643a1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44081.json", "taxon_id": "71421", "uniprot_accession": "P44081", "uniprot_release": "2026_03" } ], "pfam_id": "PF10833", "short_name": "DUF2572", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella phage P22", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2560-pf10834.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10834", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2560-pf10834.yaml" } ], "pfam_ids": [ "PF10834" ], "protein_name": "Uncharacterized 9.0 kDa protein in gp15-gp3 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEIIPMTEEQKFQLEIYKLVMNQNAAAEEAFQFIGTDELKLELFKIHFQSGGANSDITTRTIEAVRKSREALDLFTTGA", "sequence_length": 80, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e05b546ba8fbd84c8dd0c1567bfaa519d0f502b2ea138bf33d118b39c48e94a1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P57018.json", "taxon_id": "10754", "uniprot_accession": "P57018", "uniprot_release": "2026_03" } ], "pfam_id": "PF10834", "short_name": "DUF2560", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2573-pf10835.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10835", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2573-pf10835.yaml" } ], "pfam_ids": [ "PF10835" ], "protein_name": "Uncharacterized protein YusU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKLLAVFSKGRWKMEQKLQEQLDGLLEKYTELLLGETNDELKEEVKQWILYTHIAKSMPPLAKHWNATYPDAKQGIKEIIQHIKELNEAHRNKQ", "sequence_length": 95, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3cc6f2e3d811c40f75c9e23bf448aacbb38cd26082e11d6e6765b76a759cbcad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32187.json", "taxon_id": "224308", "uniprot_accession": "O32187", "uniprot_release": "2026_03" } ], "pfam_id": "PF10835", "short_name": "DUF2573", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2574-pf10836.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10836", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2574-pf10836.yaml" } ], "pfam_ids": [ "PF10836" ], "protein_name": "Uncharacterized protein YehE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKYWLSGIIFLAYGLASPAFSSETATLAINGRISPPTCSMAMVNGQPQQHCGQLTYNVDTRHLFSSPVKGVTTEVVVAGSDSKRRIVLNRYD", "sequence_length": 93, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b503081ed1c26cba0c2e3b866ad51c9c809749b9a1b0a2ddf88cb31d7f3dd3b6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P33344.json", "taxon_id": "83333", "uniprot_accession": "P33344", "uniprot_release": "2026_03" } ], "pfam_id": "PF10836", "short_name": "DUF2574", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human cytomegalovirus (strain Merlin)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2677-pf10838.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2677-pf10838.yaml" } ], "pfam_ids": [ "PF10838" ], "protein_name": "Membrane protein UL121", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWGCGWSRILVLLLLMCMALMARGTYGAYICSPNPGRLRISCALSVLDQRLWWEIQYSSGRLTRVLVFHDEGEEGDDVHLTDTHHCTSCTHPYVISLVTPLTINATLRLLIRDGMYGRGEKELCIAHLPTLRDIRTCRVDADLGLLYAVCLILSFSIVTAALWKVDYDRSVAVVSKSYKS", "sequence_length": 180, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bcab5c5066937ea04a2434b840bc6c11eb32f6b14b72445be70342bde05f8f06", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F5HD27.json", "taxon_id": "295027", "uniprot_accession": "F5HD27", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human cytomegalovirus (strain AD169)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2677-pf10838.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2677-pf10838.yaml" } ], "pfam_ids": [ "PF10838" ], "protein_name": "Membrane protein UL121", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWGCGWSRIIVLLPLMCMALMARGTYGTYICSPNPGRLRISCALSVLDQRLWWEIQYSSGRLTRVLVFHDDGEEGGDLHLTDTRHCTSCTHPYVISLVTPLTINATLRLLIQDGMYGRGEKELCIAHLPTLRDIRTCRVDADLGLLYAVCLILSFSIVAAALWKVDYDRSVAVGPKSYKS", "sequence_length": 180, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "38b38509510e40566439763e039a370bfb0c8b4842659d648b366da1321f43e4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P16741.json", "taxon_id": "10360", "uniprot_accession": "P16741", "uniprot_release": "2026_03" } ], "pfam_id": "PF10838", "short_name": "DUF2677", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2647-pf10839.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10839", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2647-pf10839.yaml" } ], "pfam_ids": [ "PF10839" ], "protein_name": "Uncharacterized protein ycf68", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYSSCLNRSLKPNKLLLRRIDGAIQVRSHVDLTFYSLVGSGRSGGGTTAPLFSRIHTSLISVWRAISRAQVEVRPQWENGAPNNASSQTKNYEITLSFWGDGGIVPFEPFFHAFPGGLEKAAINRTSLILPS", "sequence_length": 133, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5dbca2ff15b8f27fbb13deedf3d4b494f39a6a07506b8e11134d05190499d38b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C304.json", "taxon_id": "4530", "uniprot_accession": "P0C304", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2647-pf10839.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10839", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2647-pf10839.yaml" } ], "pfam_ids": [ "PF10839" ], "protein_name": "Uncharacterized protein ycf68", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYSSCLNRSLKPNKLLLRRIDGAIQVRSHVDLTFYSLVGSGRSGGGTTAPLFSRIHTSLISVWRAISRAQVEVRPQWENGAPNNASSQTKNYEITLSFWGDGGIVPFEPFFHAFPGGLEKAAINRTSLILPS", "sequence_length": 133, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5dbca2ff15b8f27fbb13deedf3d4b494f39a6a07506b8e11134d05190499d38b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P12173.json", "taxon_id": "39947", "uniprot_accession": "P12173", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza nivara", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2647-pf10839.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10839", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2647-pf10839.yaml" } ], "pfam_ids": [ "PF10839" ], "protein_name": "Uncharacterized protein ycf68", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYSSCLNRSLKPNKLLLRRIDGAIQVRSHVDLTFYSLVGSGRSGGGTTAPLFSRIHTSLISVWRAISRAQVEVRPQWENGAPNNASSQTKNYEITLSFWGDGGIVPFEPFFHAFPGGLEKAAINRTSLILPS", "sequence_length": 133, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5dbca2ff15b8f27fbb13deedf3d4b494f39a6a07506b8e11134d05190499d38b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ENB7.json", "taxon_id": "4536", "uniprot_accession": "Q6ENB7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10839", "short_name": "DUF2647", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2645-pf10840.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10840", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2645-pf10840.yaml" } ], "pfam_ids": [ "PF10840" ], "protein_name": "Inner membrane protein YjeO", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSARMFVLCCIWFIVAFLWITITSALDKEWMIDGRGINNVCDVLMYLEEDDTRDVGVIMTLPLFFPFLWFALWRKKRGWFMYATALAIFGYWLWQFFLRYQFCL", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cd694b3bb7393652c450bff7bcde7d9292d2ac5b277a02616b6c4fe41b0e0db4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P39284.json", "taxon_id": "83333", "uniprot_accession": "P39284", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2645-pf10840.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10840", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2645-pf10840.yaml" } ], "pfam_ids": [ "PF10840" ], "protein_name": "Inner membrane protein YgiZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKQKIKTIFEALLYIMLTYWLIDSFFAFNKYDWMLESGGNICSIPSVSGEDRILQAMIAAFFLLTPLIILILRKLFMREMFEFWVYVFSLGICLVCGWWLFWGRFIFCY", "sequence_length": 110, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5fc65419d9bc86678309ca54f6d96ed6fb657947321ef06cdc0fb188c570158f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q46867.json", "taxon_id": "83333", "uniprot_accession": "Q46867", "uniprot_release": "2026_03" } ], "pfam_id": "PF10840", "short_name": "DUF2645", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2644-pf10841.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10841", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2644-pf10841.yaml" } ], "pfam_ids": [ "PF10841" ], "protein_name": "Uncharacterized protein HI_1495", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFSELFTNADGRLSTTASIQFWGFVAATGVLLYSVYLDKPYVPEMFSTFLFACVGTAATKGVANALSQRREQGKEQGREQGREQE", "sequence_length": 86, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d6c82e0511bb37ccee6e8a73dee91f2be60d1afce35961580fb29b26e095ff2a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44219.json", "taxon_id": "71421", "uniprot_accession": "P44219", "uniprot_release": "2026_03" } ], "pfam_id": "PF10841", "short_name": "DUF2644", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2642-pf10842.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2642-pf10842.yaml" } ], "pfam_ids": [ "PF10842" ], "protein_name": "Uncharacterized protein YuzF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVNQGSPQLVSLVDPYVYQTIKKLIGSRFVIQTVRDTVRGRLIDVKPDHITIEGARNSVCLIRIQHMISVTPDYSERV", "sequence_length": 78, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e86ab59892db1b17ad75e89121f95cccf462e8a95b7e4378af0354f0fa1456c9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32097.json", "taxon_id": "224308", "uniprot_accession": "O32097", "uniprot_release": "2026_03" } ], "pfam_id": "PF10842", "short_name": "DUF2642", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rgi1-pf10843.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10843", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rgi1-pf10843.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/respiratory-growth-induced-protein-1-superfamily-ipr038235.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038235", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/respiratory-growth-induced-protein-1-superfamily-ipr038235.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/respiratory-growth-induced-protein-1-3-40-1000-40.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.1000.40", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/respiratory-growth-induced-protein-1-3-40-1000-40.yaml" } ], "pfam_ids": [ "PF10843" ], "protein_name": "Respiratory growth induced protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKKDKKEVKVQTVTTEDGETVKVFEDLQGFETFIANETEDDDFDHLHCKLNYYPPFVLHESHEDPEKISDAANSHSKKFVRHLHQHIEKHLLKDIKQAVRKPELKFHEKSKEETFDKITWHYGEETEYHGRPFKIDVQVVCTHEDAMVFVDYKTHPVGAN", "sequence_length": 161, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ab9e98270228bc9682f67c26c3b6432925dc93f914677265b58b065ffd3e9e5c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40043.json", "taxon_id": "559292", "uniprot_accession": "P40043", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rgi1-pf10843.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10843", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rgi1-pf10843.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/respiratory-growth-induced-protein-1-superfamily-ipr038235.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038235", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/respiratory-growth-induced-protein-1-superfamily-ipr038235.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/respiratory-growth-induced-protein-1-3-40-1000-40.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.1000.40", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/respiratory-growth-induced-protein-1-3-40-1000-40.yaml" } ], "pfam_ids": [ "PF10843" ], "protein_name": "Respiratory growth induced protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKKDKKAKGPKMSTITTKSGESLKVFEDLHDFETYLKGETEDQEFDHVHCQLKYYPPFVLHDAHDDPEKIKETANSHSKKFVRHLHQHVEKHLLKDIKTAINKPELKFHDKKKQESFDRIVWNYGEETELNAKKFKVSVEVVCKHDGAMVDVDYKTEPLQPLI", "sequence_length": 164, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b6383413cd6336c33f20acaa5dcc80e002947907b19c3d6e316d01bfda43a581", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40188.json", "taxon_id": "559292", "uniprot_accession": "P40188", "uniprot_release": "2026_03" } ], "pfam_id": "PF10843", "short_name": "RGI1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2577-pf10844.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10844", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2577-pf10844.yaml" } ], "pfam_ids": [ "PF10844" ], "protein_name": "Uncharacterized protein YqbR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRLSEAIKHLAVRAVDSESPVDILPAEVVSVSPVEIRLNENDKLIIPADLIIVPKRLRAGEEALNTGERVMIVSLKGGQSFFILDKI", "sequence_length": 87, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d69c044f024ebc8d6bd3da62f8a9bd30393493c092a28cdf8a8f5719c4685c69", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P45933.json", "taxon_id": "224308", "uniprot_accession": "P45933", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2577-pf10844.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10844", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2577-pf10844.yaml" } ], "pfam_ids": [ "PF10844" ], "protein_name": "Phage-like element PBSX protein XkdR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRLSEAIKHLAVGAVDAESPVELLPAEVVSVSPVEIKLKENSKLIIPEDAIIIPKRMQSGGDDALEPGDRLMTAALTGGQSFFILDKV", "sequence_length": 88, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4ed90a418813b475709d8fef0fd429691c460a848a8a2de867a6c620b080fb8a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54337.json", "taxon_id": "224308", "uniprot_accession": "P54337", "uniprot_release": "2026_03" } ], "pfam_id": "PF10844", "short_name": "DUF2577", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2576-pf10845.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10845", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2576-pf10845.yaml" } ], "pfam_ids": [ "PF10845" ], "protein_name": "Uncharacterized 12.4 kDa protein in CTL-LEF2 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYRTSRINNAPVVASQHDYDRDQIKRELNSLRRNVHDLCTRSGTSFDCNKFLRSDDMTPVVTTITPKRTADYKITEYVGDVKTIKPSNRPLVESGPLVREAAKYGECIV", "sequence_length": 109, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5bdd5e6a553cf8dcfc0ee25e74d70e39f49a587e2b8cbd6d21a84fbdca64dbdc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41420.json", "taxon_id": "46015", "uniprot_accession": "P41420", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2576-pf10845.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10845", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2576-pf10845.yaml" } ], "pfam_ids": [ "PF10845" ], "protein_name": "Uncharacterized 8.6 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNRPTMRNTAAVTTDYDREQLRRELNSLRRSVHELCTRSATGFDCNRFLEAGDRAPAVIVKAAANGGQHSSLICDKV", "sequence_length": 77, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c6b8ebd9a369032e68629dba139e9ad71415cc4e9b2c05f5a794c30a11990aed", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q65371.json", "taxon_id": "262177", "uniprot_accession": "Q65371", "uniprot_release": "2026_03" } ], "pfam_id": "PF10845", "short_name": "DUF2576", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cellular-response-to-methylmercury-go0071406.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071406", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cellular-response-to-methylmercury-go0071406.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2722-pf10846.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2722-pf10846.yaml" } ], "pfam_ids": [ "PF10846" ], "protein_name": "Protein BOP3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTFNSYSQPKESNDNSHNNVNKSKSLLDIIFGTNVSEWAFSENALMKAMDLKIEQEKTKQQYYKLENLNRSIELFKLASSSGLPINQIHKLFNTDHGVPASSPMKAGGNQPHNNTEGTQSSENLPRLNGSMKSLKPLNMNTVSPTPMSRQPSPYKFPASSSTGGISHSTVTNVQRRANSPARIGASAVAALNDNISIKEEDVARRIPSGTKSQESPLNKKPTSLHSRNLSLPIGKFTNPNIPSTMTSILSFNRDQQQPLSQPLPPPPQQQQDLHTHNLHTIPRKPGMVQKKHRRARSTSSFGVIDLSIIDEAKEKQVQRSPSPIHSNVSVALTSHDKPIESNMKEQPNMLQSVREGRQVHDDLDDRTCSESSSRNESPVRTITKDNSVGKILNST", "sequence_length": 396, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9123f4b382c3c49a094802cecc4be0c621816fd12f0e345e76ecbcbc09c3d37e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53958.json", "taxon_id": "559292", "uniprot_accession": "P53958", "uniprot_release": "2026_03" } ], "pfam_id": "PF10846", "short_name": "DUF2722", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Synechococcus sp. (strain WH8020)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2656-pf10847.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10847", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2656-pf10847.yaml" } ], "pfam_ids": [ "PF10847" ], "protein_name": "Uncharacterized 16.1 kDa protein in cpeY 3'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQFFVLSHNLQIHSESVPSFTPSELAEGLSLHSDHINTNALNHPHWMVLVESDLSHQELAREVVNAWKKFRNSLGHSMNHSFIALGGRKDSKATPGSPLQEGYWGVDVVECANPDSFLKSINWDALKASRPVDGVFEVRD", "sequence_length": 140, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "75bf2dcdac8fe383e02b33858d4d5ebd22bed9cf092aef183d918f5466455a97", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q02186.json", "taxon_id": "32052", "uniprot_accession": "Q02186", "uniprot_release": "2026_03" } ], "pfam_id": "PF10847", "short_name": "DUF2656", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2654-pf10849.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2654-pf10849.yaml" } ], "pfam_ids": [ "PF10849" ], "protein_name": "Uncharacterized 12.4 kDa protein in mobB-Gp55 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDKPEINDEVEKLISSIEEKNRLEAERKANKLLSKNKRELNRLYKHAQIAAENNNFAQYEYAIKKSRDILKQPYNDELISILWKTTRSQIEDMIDAYTRKIQAS", "sequence_length": 105, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d3f60307d109b74d991503f5cdcf296abcebd2eae96cf3aae152803f63af24ca", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P13326.json", "taxon_id": "10665", "uniprot_accession": "P13326", "uniprot_release": "2026_03" } ], "pfam_id": "PF10849", "short_name": "DUF2654", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2653-pf10850.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10850", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2653-pf10850.yaml" } ], "pfam_ids": [ "PF10850" ], "protein_name": "Uncharacterized protein YxcD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRLILNEQEIVDGICVYISNEEDIYPEDVEVKELSYNKRTGFFAEATFGLHHKQLMSDDISEGIIQFLEEYHNFNPDVTVVELQFDKKKGFSALVFVNEAEE", "sequence_length": 102, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dbff718ba8d66fef7129c4f2ef66d7b0173ed2bde7e8ddae4a22807c25d16afb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P46334.json", "taxon_id": "224308", "uniprot_accession": "P46334", "uniprot_release": "2026_03" } ], "pfam_id": "PF10850", "short_name": "DUF2653", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2652-pf10851.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10851", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2652-pf10851.yaml" } ], "pfam_ids": [ "PF10851" ], "protein_name": "Uncharacterized protein MT2638", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQLLESVIDAAKGMKLAKLEGDAAFFWAPGGNTSVLVCDRPPQMRQRFRTRREQIKKDHPCDCKSCEQRDNLSIKFVAHEGEVAEQKVKRNVELAGVDVILVHRMLKNEVPVSEYLFMTDVVAQCLDESVRKLATPLTHDFEGIGETSTHYIDLATSDMPPAVPDHSFFGLLWADVKFEWHALPYLLGFKKACAGFRSLGRGATEEPAEMG", "sequence_length": 212, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e0a5ce8b80a216b2eed3e97719c37cd7bb7a7e85329d9e0cb72d3e8b4ab45fa0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WL98.json", "taxon_id": "83331", "uniprot_accession": "P9WL98", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2652-pf10851.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10851", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2652-pf10851.yaml" } ], "pfam_ids": [ "PF10851" ], "protein_name": "Uncharacterized protein Rv2561/Rv2562", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQLLESVIDAAKGMKLAKLEGDAAFFWAPGGNTSVLVCDRPPQMRQRFRTRREQIKKDHPCDCKSCEQRDNLSIKFVAHEGEVAEQKVKRNVELAGVDVILVHRMLKNEVPVSEYLFMTDVVAQCLDESVRKLATPLTHDFEGIGETSTHYIDLATSDMPPAVPDHSFFGLLWADVKFEWHALPYLLGFKKACAGFRSLGRGATEEPAEMG", "sequence_length": 212, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e0a5ce8b80a216b2eed3e97719c37cd7bb7a7e85329d9e0cb72d3e8b4ab45fa0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WL99.json", "taxon_id": "83332", "uniprot_accession": "P9WL99", "uniprot_release": "2026_03" } ], "pfam_id": "PF10851", "short_name": "DUF2652", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2651-pf10852.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10852", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2651-pf10852.yaml" } ], "pfam_ids": [ "PF10852" ], "protein_name": "Uncharacterized protein YbeF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDELDIAFFILPLGIMLLSIVGTCICKNPYLMPMLSLVISLVLTFTIFNQSFLGWAVVYSLVSLALSYITLIVVRKRKESGN", "sequence_length": 82, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "10848093412e840158002c249ca77eeefe6fd0f0abe0474b01fd1bd7868f00d9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31442.json", "taxon_id": "224308", "uniprot_accession": "O31442", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2651-pf10852.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10852", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2651-pf10852.yaml" } ], "pfam_ids": [ "PF10852" ], "protein_name": "Uncharacterized protein YycQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGAIAVLFIVFGFPIVAGVFGIAGHFLFKRFWVAPLIVLITSLILLVTLASGNSSFIFWVVMYTAIALVTSVATLFLRKFFE", "sequence_length": 82, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bd0cf9cd5cd776ca11bcdc397debda95178f1b6b50268a539fed16ea3e3f6ed1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q45605.json", "taxon_id": "224308", "uniprot_accession": "Q45605", "uniprot_release": "2026_03" } ], "pfam_id": "PF10852", "short_name": "DUF2651", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2650-pf10853.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10853", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2650-pf10853.yaml" } ], "pfam_ids": [ "PF10853" ], "protein_name": "Uncharacterized protein ZK353.2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSYGYGGYGNCGGGILGSVLGMAGGMAGGYGGYGGYGGYGRCGADNVFYRWRCCDYSPYECCIQLETWVVVFLVIFIIGFFVCLCACLAGCVWSARNRE", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4e162b09de803f20abfa9e0925736bda05c0e3717f8a1e515d1167085857bbb4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P34625.json", "taxon_id": "6239", "uniprot_accession": "P34625", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2650-pf10853.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10853", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2650-pf10853.yaml" } ], "pfam_ids": [ "PF10853" ], "protein_name": "Protein SUP-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMSYIALAACIGLAMAANVDHDVKSAVNEVTTTKDGDTYCPVPLVGTKCGTSSIFHYWKCCGELNKECCFNLQTWVWVTLALFGVIFIASFVISLVRCICCRK", "sequence_length": 103, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b5eb3a781f1d0d0845338c5a26a28a1d5daacfe47210e698f09568d5753b9535", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9XWU2.json", "taxon_id": "6239", "uniprot_accession": "Q9XWU2", "uniprot_release": "2026_03" } ], "pfam_id": "PF10853", "short_name": "DUF2650", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Spiroplasma virus SpV1-R8A2 B", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2649-pf10854.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10854", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2649-pf10854.yaml" } ], "pfam_ids": [ "PF10854" ], "protein_name": "Uncharacterized protein ORF10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQNDWIKLKEFFIYIFLFIDKTNVESITMWNLTQNEYLTLMVGVWIVILFLTWFLLWMVFKIVGYFK", "sequence_length": 67, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "75a35e0d5d36ef37268afcdbf9a46c3deb7969d07616e04e4e471417ecb562e4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P15901.json", "taxon_id": "10854", "uniprot_accession": "P15901", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Spiroplasma virus SpV1-C74", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2649-pf10854.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10854", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2649-pf10854.yaml" } ], "pfam_ids": [ "PF10854" ], "protein_name": "Uncharacterized protein ORF10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQNDWQEFKEFFIYIFLFIDKANVESIIMWNLTQNEYLTLMVGVWVVILFLTWFFLWMVFKIVGYFK", "sequence_length": 67, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4183aee5b6a41d1f462ff2e71ed1305226360de418a6317065588766442571ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q88426.json", "taxon_id": "185959", "uniprot_accession": "Q88426", "uniprot_release": "2026_03" } ], "pfam_id": "PF10854", "short_name": "DUF2649", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2678-pf10856.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10856", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2678-pf10856.yaml" } ], "pfam_ids": [ "PF10856" ], "protein_name": "Transmembrane protein 243", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDFSTRTYGTSGLDNRPLFGETSAKDRIINLVVGSLTSLLILVTLISAFVFPQLPPKPLNIFFAVCISLSSITACILIYWYRQGDLEPKFRNLIYYILFSIIMLCICANLYFHDVGK", "sequence_length": 118, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ff2659e50ae06dffdd1c66e90474146e7099b882a3e807930586b4ea6f8464bc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0JNK6.json", "taxon_id": "9913", "uniprot_accession": "A0JNK6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2678-pf10856.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10856", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2678-pf10856.yaml" } ], "pfam_ids": [ "PF10856" ], "protein_name": "Transmembrane protein 243", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDFATRTYGTSGLDNRPLFGETSAKDRIINLVVGSLTSLLILVTLISAFVFPQLPPKPLNIFFAVCISLSSITACILIYWYRQGDLEPKFRKLIYYIIFSIIMLCICANLYFHDVGR", "sequence_length": 118, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d19137d9ec7c627a5ea1eb1e3c386b8a66dd3b3730abfc7daaadcbcbd2ef7d78", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BU79.json", "taxon_id": "9606", "uniprot_accession": "Q9BU79", "uniprot_release": "2026_03" } ], "pfam_id": "PF10856", "short_name": "DUF2678", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Swinepox virus (strain Kasza)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2701-pf10857.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10857", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2701-pf10857.yaml" } ], "pfam_ids": [ "PF10857" ], "protein_name": "Uncharacterized protein C15", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTTTSQIIIDNDMSNEVGTIMVITLCLVTIVITCYLLLQLVRWSFIVDIFRQIRTRCLQWTSRREFLQLDNMYYTNDSSVGVNTE", "sequence_length": 86, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "92e319f4a9f1b2fe610ccc6bf39fc241f362d14eb07b8c799f731083898f1a49", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32220.json", "taxon_id": "10277", "uniprot_accession": "P32220", "uniprot_release": "2026_03" } ], "pfam_id": "PF10857", "short_name": "DUF2701", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf2659-pf10858.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10858", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf2659-pf10858.yaml" } ], "pfam_ids": [ "PF10858" ], "protein_name": "Uncharacterized protein RP231", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDILDEVLSDQNEEKRLIFFKKLVPIIIIISIVVITIMVIIKNNKDNRIKNNQKNGDILVKTIGLDTTKDNKALAFNTLENLITSSNTKIKEIAALEQVAIRMSEKKYLGAKNLLNKIIDNEKYSEISTAYARIAWCCIVLDDQSLNIQDKGKLQKYLNYFDDEKKPFWATATIIKAILDIKHNMKTQAEKNLKNLLASNNVSDLLKDQAKALLVSLSK", "sequence_length": 220, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8a754a09f9daba5e05d395d12b0fc049d414d224e370f6a2806d37da6faea6bc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZDU3.json", "taxon_id": "272947", "uniprot_accession": "Q9ZDU3", "uniprot_release": "2026_03" } ], "pfam_id": "PF10858", "short_name": "DUF2659", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2660-pf10859.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10859", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2660-pf10859.yaml" } ], "pfam_ids": [ "PF10859" ], "protein_name": "Uncharacterized protein RP222", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLMYKKIVGHKKNMLPATLNNIDDSQNVALNRKKSENKKLTLQEKIELSWQFLYDLTEIILNKFSKEDVVQVNKCGQILFENGVRYEHVVDLITPHQVRSHTQLVEQEQSKGKKALRM", "sequence_length": 118, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "623a95411c76d38bd02c58b7a0ae9dd6cc7d00cc57791af5010a769ede685472", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZDV2.json", "taxon_id": "272947", "uniprot_accession": "Q9ZDV2", "uniprot_release": "2026_03" } ], "pfam_id": "PF10859", "short_name": "DUF2660", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2661-pf10860.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10860", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2661-pf10860.yaml" } ], "pfam_ids": [ "PF10860" ], "protein_name": "Uncharacterized 10.5 kDa protein in HE65-PK2 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKRQFALLFVWHHDNQFVCNTDEYPFWHNIEYHARRYKCIVLYCVENDGSLQLPVCKNINLINYKKAYPHYYGNCVDSIVKRAGKN", "sequence_length": 87, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "382b6e8d395080b841e3159667b1957d87d9d5305b868b08c9f25d62d2b6d825", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41665.json", "taxon_id": "46015", "uniprot_accession": "P41665", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2661-pf10860.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10860", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2661-pf10860.yaml" } ], "pfam_ids": [ "PF10860" ], "protein_name": "Uncharacterized 20.3 kDa protein in HE65-PK2 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKVTAMLNPHLLDVAYNYLLLMDMDCVVQSVQWKQLSTDTYCFEPFYDSQIKWLYAPKSGQSFDSYLENYATLIRVKQVQQHRKELILHCVDFLTMKANDNFMVFKNYINMIIKVYLQFYNYRFPINFEDNTMKPCVNLTFRRGGSWKTQLQPVCNYVYKSKNMPKFIK", "sequence_length": 169, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "66419507c580e5fdc3100de71316ee018272e81e653351cff2090712f59cff43", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41666.json", "taxon_id": "46015", "uniprot_accession": "P41666", "uniprot_release": "2026_03" } ], "pfam_id": "PF10860", "short_name": "DUF2661", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10861", "short_name": "DUF2784", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium marinum (strain ATCC BAA-535 / M)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fcot-pf10862.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10862", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fcot-pf10862.yaml" } ], "pfam_ids": [ "PF10862" ], "protein_name": "(2E)-enoyl-[ACP] glycyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTTDLTSPAHAAVESAGTTAIAEDLLARVLEPYSYKGCRYLLDARYHADDDSVLAYGNFTISESAYIRSTGHFNAVELILCFNQLAYSAFAPAVANEEIPQLRGWSLEDYFQHQLASMFIRNSSSRFNRPINPAKFSARLQCRNLQVVQRTWRYLLVPCAIEFWDEDGGAASGEVELAALNIP", "sequence_length": 184, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "51862de7b7fbae968fe5627163361e6d3d16449b8b9b272b3f26b9561f01cbe2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B2HKM2.json", "taxon_id": "216594", "uniprot_accession": "B2HKM2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fcot-pf10862.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10862", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fcot-pf10862.yaml" } ], "pfam_ids": [ "PF10862" ], "protein_name": "(2E)-enoyl-[ACP] glycyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSHTDLTPCTRVLASSGTVPIAEELLARVLEPYSCKGCRYLIDAQYSATEDSVLAYGNFTIGESAYIRSTGHFNAVELILCFNQLAYSAFAPAVLNEEIRVLRGWSIDDYCQHQLSSMLIRKASSRFRKPLNPQKFSARLLCRDLQVIERTWRYLKVPCVIEFWDENGGAASGEIELAALNIP", "sequence_length": 183, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d421e40f3a85a4e5bc3292f3f4432cd82de00731de1ca85b1c121410ba531aff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM66.json", "taxon_id": "83331", "uniprot_accession": "P9WM66", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fcot-pf10862.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10862", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fcot-pf10862.yaml" } ], "pfam_ids": [ "PF10862" ], "protein_name": "(2E)-enoyl-[ACP] glycyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSHTDLTPCTRVLASSGTVPIAEELLARVLEPYSCKGCRYLIDAQYSATEDSVLAYGNFTIGESAYIRSTGHFNAVELILCFNQLAYSAFAPAVLNEEIRVLRGWSIDDYCQHQLSSMLIRKASSRFRKPLNPQKFSARLLCRDLQVIERTWRYLKVPCVIEFWDENGGAASGEIELAALNIP", "sequence_length": 183, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d421e40f3a85a4e5bc3292f3f4432cd82de00731de1ca85b1c121410ba531aff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM67.json", "taxon_id": "83332", "uniprot_accession": "P9WM67", "uniprot_release": "2026_03" } ], "pfam_id": "PF10862", "short_name": "FcoT", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nop19-pf10863.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10863", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nop19-pf10863.yaml" } ], "pfam_ids": [ "PF10863" ], "protein_name": "Nucleolar protein 19", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRAKELQEKLNLQAKLQSTFSNNTAAVLDWLKESDETGISNDTERNKQLKDHKELEDGKKAFFKLPVLQIGSGLHFRTQDDASAKEDIHTIGEFIEGDKKVSSLAKKKKRSDPGLQRNNMYRITKDDTKAMIALKRKMRKGEKEGLRKKQEHSKSSVSNSYSASDEEDEDAGTMPQKSTKKKFGLLFDKKKKARK", "sequence_length": 196, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c4af0cdee39cfef57f3bf32c894881e230b21e2eb9f4c7ae8c2284fb800ad8b2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53317.json", "taxon_id": "559292", "uniprot_accession": "P53317", "uniprot_release": "2026_03" } ], "pfam_id": "PF10863", "short_name": "NOP19", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2663-pf10864.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10864", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2663-pf10864.yaml" } ], "pfam_ids": [ "PF10864" ], "protein_name": "Uncharacterized protein YpbF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLWNQLDQFTDAPTKQMLQALVKRKQKFENYAAQCRRWRWASLICLGLLCVMIMIKSPEPQLILQEILSHTFYLFWMLATAFAYCTSYYFKKKEEKSETDFHKLRCEIIQKSTDLWPQPDKWKARESVFHMMKHKYDINLYFESK", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "63b74190cf407e83563899c98364c14b391421504fb5315d269a225333f74f8f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P50732.json", "taxon_id": "224308", "uniprot_accession": "P50732", "uniprot_release": "2026_03" } ], "pfam_id": "PF10864", "short_name": "DUF2663", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2703-pf10865.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10865", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2703-pf10865.yaml" } ], "pfam_ids": [ "PF10865" ], "protein_name": "Uncharacterized protein AF_1295", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQLTIKWLHLSVDGETCPRCSETGKELLKAVNTLKEFLSPLGFEVVFEEVELTPEDFSRDPFKSNEVWINGRLLEDWIGAKVTQTPCCDVCGDQECRALEVDQQLQEVVKADLVVKAALMAVAELKTSCCSETSCCD", "sequence_length": 137, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6c20d1498615a35dcfef752a15810a7a7a9bb768869c88de407329e99f7b14b4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O28974.json", "taxon_id": "224325", "uniprot_accession": "O28974", "uniprot_release": "2026_03" } ], "pfam_id": "PF10865", "short_name": "DUF2703", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2704-pf10866.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10866", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2704-pf10866.yaml" } ], "pfam_ids": [ "PF10866" ], "protein_name": "Uncharacterized 19.5 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDAGEAPAVAATDKPHRRTLRAAQDDYTVDGLRLKPAYVEYYRQLQEIVELAVITLSKQLDIREVQEVYSLARQLYEILRGQFVDEPFKLWLETNASRLAADAEFKKSMHKILQDQLQTLTAKTNTFKNAVLNVLNNELSTDANLYDTSAGYIKPNCIVTTFTCCDLTFEP", "sequence_length": 172, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9643dc631eb1d3e3b752cd35187c90998d17cb4ddf4971b61fd5ba9a2a55266c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10327.json", "taxon_id": "262177", "uniprot_accession": "O10327", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2704-pf10866.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10866", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2704-pf10866.yaml" } ], "pfam_ids": [ "PF10866" ], "protein_name": "Uncharacterized 30.6 kDa protein in IAP2-VLF1 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKINLCNIQFQSLINLLNLQATTMSLLNSNKIKADLIPDEDDPKKITLRLNSVPEEHTDDNSSIDLPLTTPKQKDDFMNAIKSFETLNIEPDIVKTEQADAPATSGDNNRKVVDANVDEYTVDGLKLKSKYVAYYKCLKILVDFLVMYVSKEVSMKEYEQVYTLGRQLYEVLRSIFVDEPFKLWLERNTHEFDNNKDKILETLQSELKLALADKDKLKTCTFKDIITNLLNTKLDCKYDCADEYIKPNCIVDTYNCCNLVFKKET", "sequence_length": 265, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6e7d1e5179ccec8567e21ee8c2fcac4e9407f26fbc065f2dacca4df6d4c30f14", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41473.json", "taxon_id": "46015", "uniprot_accession": "P41473", "uniprot_release": "2026_03" } ], "pfam_id": "PF10866", "short_name": "DUF2704", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human cytomegalovirus (strain Merlin)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2664-pf10867.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2664-pf10867.yaml" } ], "pfam_ids": [ "PF10867" ], "protein_name": "Protein UL96", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSVNKQLLKDVMRVDLERQQHQFLRRTYGPQHRLTTQQALTVMRVAAREQTRYSQRTTQCVAAHLLEQRAAVQQELQRARQLQSGNVDDALDSLTELKDTVDDVRATLVDSVSATCDLDLEVDDAV", "sequence_length": 127, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc090d2ddfa62aae34e174d17a301356db8c2f694efbb8f6510086a25d09dc5f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F5H8R6.json", "taxon_id": "295027", "uniprot_accession": "F5H8R6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human cytomegalovirus (strain AD169)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2664-pf10867.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2664-pf10867.yaml" } ], "pfam_ids": [ "PF10867" ], "protein_name": "Protein UL96", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSVNKQLLKDVMRVDLERQQHQFLRRTYGPQHRLTTQQALTVMRVAAREQTRYSQRTTQCVAAHLLEQRAAVQQELQRARQLQSGNVDDALDSLTELKDTVDDVRATLVDSVSATCDLDLEVDDAV", "sequence_length": 127, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc090d2ddfa62aae34e174d17a301356db8c2f694efbb8f6510086a25d09dc5f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P16787.json", "taxon_id": "10360", "uniprot_accession": "P16787", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human herpesvirus 6A (strain Uganda-1102)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2664-pf10867.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2664-pf10867.yaml" } ], "pfam_ids": [ "PF10867" ], "protein_name": "Protein U68", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLKDYLRQSISKDLEVRHRDSLKIRLGERHPLSVHQHMIAARQIIKSDNAEQQHVISSLSGFLDKQKSFLRVQQKALKQLEKLDVDEIIDTAAEVKAVSNDIKETLITSTELE", "sequence_length": 114, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "202bd43c45ed06989eb99d42fddabd498d032061fbd3289107fc4bd47f1052e5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P24445.json", "taxon_id": "10370", "uniprot_accession": "P24445", "uniprot_release": "2026_03" } ], "pfam_id": "PF10867", "short_name": "DUF2664", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/defensin-like-pf10868.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10868", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/defensin-like-pf10868.yaml" } ], "pfam_ids": [ "PF10868" ], "protein_name": "Putative defensin-like protein 27", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVHPRFVFFAFLALSVLLAVMNEDSILSSNKGDSLCCNDHPEFGICTNKSCNKWCLQGCTRGGFCKRKICHCYC", "sequence_length": 74, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1d40e0ceba5d2ecef305f5ba80718990c1daebab9e3562e4af6f62205c8a3e51", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2L6T3.json", "taxon_id": "3702", "uniprot_accession": "Q2L6T3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/defensin-like-pf10868.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10868", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/defensin-like-pf10868.yaml" } ], "pfam_ids": [ "PF10868" ], "protein_name": "Putative defensin-like protein 23", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTTMKIMSFAMLLVLLFSIDVVEGSGSSLCCNTHAKFGACNTYQDRKRCNKWCLDGCDNKKGGFCKRFAGGAKKCHCYC", "sequence_length": 80, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "61799029fe31f47f6ae86363582a43f03d617409c8f1456c1b5a2e0030d32934", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2V364.json", "taxon_id": "3702", "uniprot_accession": "Q2V364", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/defensin-like-pf10868.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10868", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/defensin-like-pf10868.yaml" } ], "pfam_ids": [ "PF10868" ], "protein_name": "Putative defensin-like protein 25", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLKVFSFALILVLTFSVDVEGYNVESGGSLCCNNHPKFGKCNTNNDNQRCNRWCHNGCGNGKGDYCKAMSHGGLCHCYC", "sequence_length": 81, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "030f357c8413b535cf8f94886c0f89a37ffa121b32117f8cd9c0ae37212aee3c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2V392.json", "taxon_id": "3702", "uniprot_accession": "Q2V392", "uniprot_release": "2026_03" } ], "pfam_id": "PF10868", "short_name": "Defensin_like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2666-ipr022620.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2666-ipr022620.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2666-pf10869.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10869", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2666-pf10869.yaml" } ], "pfam_ids": [ "PF10869" ], "protein_name": "Uncharacterized protein MJ0596", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDKIEFMAKHKKWFVVKKLKIDENTEDIEIARLLASIDETVLNKIPEYLPFDMNKLYEIADGIYQKKKGRITEEEIAEVLKKLKSPATTRKLNEITESKEGKEILKAILNNIILERLGIQTRVSPKVIEKYIENSQSSNR", "sequence_length": 141, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1d642b612c769f53c1a3b04a98430ef44e74d5f329d5a5e4bc8ed701368e9186", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58013.json", "taxon_id": "243232", "uniprot_accession": "Q58013", "uniprot_release": "2026_03" } ], "pfam_id": "PF10869", "short_name": "DUF2666", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2729-pf10870.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10870", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2729-pf10870.yaml" } ], "pfam_ids": [ "PF10870" ], "protein_name": "Uncharacterized 6.3 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGNLLAYYKLKLAKSVSKTVSALLCKCVAPEDNDGDRYLQFNNNCNFIYIYVVK", "sequence_length": 55, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e272f928d9b9de2162c25cbea4f8c17405054c98b0b806573f00eb137d124a50", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10325.json", "taxon_id": "262177", "uniprot_accession": "O10325", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2729-pf10870.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10870", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2729-pf10870.yaml" } ], "pfam_ids": [ "PF10870" ], "protein_name": "Uncharacterized 7.1 kDa protein in IAP2-VLF1 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKKLLTYCKVKLVKGFSKKFASLFCRCVVSHLSDEDDSDGDRYYQYNNNCNFIYINIVK", "sequence_length": 60, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0f894c838d4687dedc97306a99e6f59f884bb4672c49fe764a676ebe521068f4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41471.json", "taxon_id": "46015", "uniprot_accession": "P41471", "uniprot_release": "2026_03" } ], "pfam_id": "PF10870", "short_name": "DUF2729", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia conorii (strain ATCC VR-613 / Malish 7)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2748-pf10871.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10871", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2748-pf10871.yaml" } ], "pfam_ids": [ "PF10871" ], "protein_name": "Uncharacterized protein RC0048", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSIYHILDRVPAIYKQDMEIEYEHLAMQLIKSGKLRIDTDDCCNFARFTEPALNISLMVSQEELTSPHLIPETTKLFQNLYKNSASDQKIKSIFDNLKKQIQKLQPVKKEVTEMLARIFVQSAHPIVIRWLLLNKTEVFLTYSHNIGDMMDMVSWQRVGGNSGMQSTNGKDVAIFVSCGGNPFAENNKDHPTYGNGFAAAARLQIIAAQELGHFADIKRDDKGRQITRHSANFSGTKATDKVRIARKNDIIHCHNLLSKLLKAGMKKQLDYETKLKFYNANKVSGLKVYAIKFMIFIYKFQLLNYSSRNNLIFVRKFKTDEYMALMIDAMFKDMQANLSPAADVYKNKNPEIEEAIACIEALARVPQQTVKWGYLTTKETMHDLYKIYYNEVIPSLITSYNAITGENYQRDFKKPKSNFFSKINIFSNKKLVLKPVREL", "sequence_length": 440, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d3fe4e2110dd2816e1086244c857e3ee755e2a38a6d209c26a9923fc8c2962c6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q92JL9.json", "taxon_id": "272944", "uniprot_accession": "Q92JL9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2748-pf10871.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10871", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2748-pf10871.yaml" } ], "pfam_ids": [ "PF10871" ], "protein_name": "Uncharacterized protein RP034", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSIYHILDRIPAIYKQDMEIEYEYLAMQLIKSGKLRIDTNDCCNFARFTDPALNINLMISKEELTKPHLIPETTKLFQSLYKNSASDQKINSIFDNLKKQIQKLQPVKKEVTEMLARLFVQSAHPIVIRWLLLNKTEVFLTYSHNIGDMMDIVSWQRVGGNSGMQSTNGKDVAIFVSCGGNPFAENNKEHPSYGDGFAAVARLQIIAAQELGHFADIKRDDKGRQLTRHAANFSGTKATDKVRIARKSDIIHCNNLFNKLLNAGMKKQLEYETKLKFYNTNKINGVKVNAIKCMILIYKFRLLNYSSKNNLIFIRKFKTYKYMALMLEAMFKDMQDNLSPNAEVYKNKNPEIEEAIACIEALARVPQQTIKWGYLTTKETMHHLYKIYYNEVIPSLITSYNSFTGENYKRNLKKPKSSFFSKINIFSNKKLILKPVREL", "sequence_length": 440, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "50c5deccf2dc63b5428bd6ad10d2467db93a420000d4d5d5b2dd7154fa74f146", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZEB1.json", "taxon_id": "272947", "uniprot_accession": "Q9ZEB1", "uniprot_release": "2026_03" } ], "pfam_id": "PF10871", "short_name": "DUF2748", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage HK022", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2740-pf10872.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10872", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2740-pf10872.yaml" } ], "pfam_ids": [ "PF10872" ], "protein_name": "Uncharacterized 5.8 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKQLSPYQDKIHKHILRDRFLSSFKQPGRFRAELEKVKLMQKEKGHE", "sequence_length": 48, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2d5820af51c3f7d7965ff7668139102a8bec0ce947232aa6eefc40fd5a95a46e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q37928.json", "taxon_id": "10742", "uniprot_accession": "Q37928", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella phage P22", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2740-pf10872.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10872", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2740-pf10872.yaml" } ], "pfam_ids": [ "PF10872" ], "protein_name": "Uncharacterized 5.8 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKQLSPDQDKLHKNILRDRFLSSFKQPGRFRAELEKVKLILKRKGHE", "sequence_length": 48, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9b3af2d782f64ee1e5c10a3f370e0166f5f3acaa21bbbeb579d31fd9a7c6571e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q38661.json", "taxon_id": "10754", "uniprot_accession": "Q38661", "uniprot_release": "2026_03" } ], "pfam_id": "PF10872", "short_name": "DUF2740", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cyyr1-pf10873.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10873", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cyyr1-pf10873.yaml" } ], "pfam_ids": [ "PF10873" ], "protein_name": "Cysteine and tyrosine-rich protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDALRLPRRLGVLLWKVVLLFVYAEDCRAQCGKDCRAYCCNGSTPHCCSYYAYIGSILSGTAIAGIVFGIVFIMGVIAGIAICICMCMKNNRGTRVGVIRAAHINAISYPMAPPPYTYDHETEYCTDLPPPYSPAPQASAQRSPPPPYPGNSRKYSSSQNRICNN", "sequence_length": 165, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3441293066f86cb19381795c0afa4e2c3be4d92295d83f7e50b33d0e16c6b7f1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5PQS5.json", "taxon_id": "10116", "uniprot_accession": "Q5PQS5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cyyr1-pf10873.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10873", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cyyr1-pf10873.yaml" } ], "pfam_ids": [ "PF10873" ], "protein_name": "Cysteine and tyrosine-rich protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENPRSASLQKSWKFVRESLLLCLIAGRGEAQCDGCIEYCCDGVPPFCCSYYAYVGDVLSGTAISGIVFGVVFLMGAVAAVFLCVCMCVKNSRGSRVGVFSSTYINTVTQGYPGPPPPPYSYDHEMFPPDLRPPPYTPTVPRSANYSPPPPYPGFSRK", "sequence_length": 158, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "28b0981b25f9dccb9c26ed5ada8b759870fea0b52a83c602d77ff9adb4417058", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NYG4.json", "taxon_id": "7955", "uniprot_accession": "Q6NYG4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cyyr1-pf10873.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10873", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cyyr1-pf10873.yaml" } ], "pfam_ids": [ "PF10873" ], "protein_name": "Cysteine and tyrosine-rich protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDAPRLPVRPGVLLPKLVLLFVYADDCLAQCGKDCKSYCCDGTTPYCCSYYAYIGNILSGTAIAGIVFGIVFIMGVIAGIAICICMCMKNHRATRVGILRTTHINTVSSYPGPPPYGHDHEMEYCADLPPPYSPTPQGPAQRSPPPPYPGNARK", "sequence_length": 154, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e9ed12d94c6a7174ff1f4adaef11d7b34baf11db3ee983b3c7214e6b60354142", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96J86.json", "taxon_id": "9606", "uniprot_accession": "Q96J86", "uniprot_release": "2026_03" } ], "pfam_id": "PF10873", "short_name": "CYYR1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium phage D29", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2746-pf10874.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10874", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2746-pf10874.yaml" } ], "pfam_ids": [ "PF10874" ], "protein_name": "Gene 30 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTELFNPDNPWETALLFFAVFCSVLPALLPFWFKIKKIDSQVSNSHDENLRDEITRGFKEVREDIRLLHEALNIERRERIAGDEKRCA", "sequence_length": 88, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f69821507e88bd10a75fabb2bf0d5f81c1217e3091d53bb57ad80af3c6fa6ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O64224.json", "taxon_id": "28369", "uniprot_accession": "O64224", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium phage L5", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2746-pf10874.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10874", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2746-pf10874.yaml" } ], "pfam_ids": [ "PF10874" ], "protein_name": "Gene 30 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTPFNPDSIGDYVTLLGVAFLTFSVPAWFTGRARKHSSDIGEIKEQVCNTHDTNLRDDLDSVKADISDLKEIVLQGFHQVNESINLERRERIEGDRRKEVA", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f2c41472eb4f67c55dc776756c31f6bca290e6446ea14ca0f05711041c675d5f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q05239.json", "taxon_id": "31757", "uniprot_accession": "Q05239", "uniprot_release": "2026_03" } ], "pfam_id": "PF10874", "short_name": "DUF2746", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2670-pf10875.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10875", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2670-pf10875.yaml" } ], "pfam_ids": [ "PF10875" ], "protein_name": "Uncharacterized protein RP269", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWRALRRLIAANPMGFFLWSIITKWYLIIAVASLITLYYTVLGLKKIGFIDYFGRETEDILSQSKAVAQNCIPKLKLVNGKLPLNEFWDCLSDPGEYKHEEVTGARVLEDEINKFMQKQTDSIADTAHPIIHPYEKLENQNNLNNTLSDNNR", "sequence_length": 152, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2a639b94b43aee5d93d2c69428779b1bff3e5d577ef4e930efe5f2bc9ebd7769", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZDQ6.json", "taxon_id": "272947", "uniprot_accession": "Q9ZDQ6", "uniprot_release": "2026_03" } ], "pfam_id": "PF10875", "short_name": "DUF2670", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10876", "short_name": "Phage_TAC_9", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2671-pf10877.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10877", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2671-pf10877.yaml" } ], "pfam_ids": [ "PF10877" ], "protein_name": "Uncharacterized protein RP215", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQEKELSNNFLEEQNTFKEDNSPFSDIKYICQASLLITDSIRKGYDVTQLSNGDINVTEIRIVNVHYNWNSEKGKFVKTNQIEFNNNKGG", "sequence_length": 90, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0f212d1e99c7589bc3c31c21c71c0deafcd9d4bffe2078c0865f8b18fdf0088f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZDV4.json", "taxon_id": "272947", "uniprot_accession": "Q9ZDV4", "uniprot_release": "2026_03" } ], "pfam_id": "PF10877", "short_name": "DUF2671", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia conorii (strain ATCC VR-613 / Malish 7)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2672-pf10878.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10878", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2672-pf10878.yaml" } ], "pfam_ids": [ "PF10878" ], "protein_name": "Uncharacterized protein RC0089", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLTQILLILFVGILVTTPHDIFIIIKELKKIKAYLINIKSSIVKNIDEPLETEQVNFYLKKIINLEGYYHGSYDLTTIKEKYYTLIINNDLIENESVPDITEKH", "sequence_length": 105, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ec803835664a408dbb98a865803355ea61e9da46f3a758a6b0d3705444d90ca3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q92JH8.json", "taxon_id": "272944", "uniprot_accession": "Q92JH8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2672-pf10878.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10878", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2672-pf10878.yaml" } ], "pfam_ids": [ "PF10878" ], "protein_name": "Uncharacterized protein RP061", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIFFFIIKKLKTIKASFIKSFFIKDIDESLETEQINFYLKRIINLEGYYYGNYDLTTIKEKYYTLIINNAFIENEIVPDLIEKH", "sequence_length": 84, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9506b97bcf1272f9cf4a8188e8fe9c682f8cf70640ecce395dba4bd30d741206", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZE85.json", "taxon_id": "272947", "uniprot_accession": "Q9ZE85", "uniprot_release": "2026_03" } ], "pfam_id": "PF10878", "short_name": "DUF2672", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2674-pf10879.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10879", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2674-pf10879.yaml" } ], "pfam_ids": [ "PF10879" ], "protein_name": "Uncharacterized protein RP158", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQNPTQKVISFSEHKADIERIKKEIEEGWAIVKLVPNKDRFIGLLEKISDPKDETIYIPPRKKIIMN", "sequence_length": 67, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "db9746e362aef9e738acfea2c4037796787ecc971b3eaf4fcde78c78ef7443fc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZE04.json", "taxon_id": "272947", "uniprot_accession": "Q9ZE04", "uniprot_release": "2026_03" } ], "pfam_id": "PF10879", "short_name": "DUF2674", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2673-pf10880.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10880", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2673-pf10880.yaml" } ], "pfam_ids": [ "PF10880" ], "protein_name": "Uncharacterized protein RP697", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNLLKILLIIAFANPVFASSMQMPDPASVTTTQIHAMSTNAQQDWIASLTANQYNMLSPDVQKWVMENTTDAQKQALGINQ", "sequence_length": 82, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0cc309dace694d4bb8e4b87bc275b5af4aea18819ba47ce0ecd5015be9fc3489", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZCM7.json", "taxon_id": "272947", "uniprot_accession": "Q9ZCM7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10880", "short_name": "DUF2673", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2726-pf10881.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2726-pf10881.yaml" } ], "pfam_ids": [ "PF10881" ], "protein_name": "Uncharacterized protein HI_1631", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEFSLQYITIFIFVILFLIGLFSSKSRSTRRNEKKSRLYLSTENKINIVNKNDHLDVVILSKYKRKALMNKSEYQLFLRLEKLLSKGYQEFRLFTQVSMGEFLESIDKEAHFAINSKRVDFLIVDKNGYAVIVIEYQGQGHYQDNAAKRDAVKREACRKAGVIFLEFQPNYGKAELEFVGENLKRYLIKN", "sequence_length": 190, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "baebc00ff268e9277d361758ded14629839f094c4a03e34f5e258f57c8868d14", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44279.json", "taxon_id": "71421", "uniprot_accession": "P44279", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sinorhizobium fredii (strain NBRC 101917 / NGR234)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2726-pf10881.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2726-pf10881.yaml" } ], "pfam_ids": [ "PF10881" ], "protein_name": "Uncharacterized protein y4bI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSTFTSQPLLNRSEPRVFKEFYRLVIGCNPAWQVMAQVSLGEILRSKDADAYSCINAKRVDLLLVDGNCRPRHVVEYQRGAHHQGAAAARDAVKKAALRCAGIGYYEVVAGQTTPSDLRRLVEKLVEKPELPICAPD", "sequence_length": 138, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8da80fb18ab1452b870cf20de23128c4f30f7debb0bb1f15934c0395a36b9051", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P55376.json", "taxon_id": "394", "uniprot_accession": "P55376", "uniprot_release": "2026_03" } ], "pfam_id": "PF10881", "short_name": "DUF2726", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bph-5-pf10882.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bph-5-pf10882.yaml" } ], "pfam_ids": [ "PF10882" ], "protein_name": "Uncharacterized protein CA_C1301", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEYIKPHKGFSTLIILGITLGIDLIFSLLSTFINTYIVLRILEIFIVFFNIYQLYYILKSLTLKYCYDNENFYVLWCFGIRRVTIPFKEIEAYNVSHGEIKGVKLWGYGRNFFALGTFSVNDIGIVNMFVTATKNVIYIKCNSSIYGISPEKCDEVKNFLEKRKLVLKNWTYEKRNKVSLSKDRHFDILIFLISIVILMVTIIPFILYLRGVMPHKMPLSFDSNFKPMIYGTSREFAFKHMMYGAYNMIIFFCIYYSAYFYARYSKKLAYRLMYISFLVAFIFLIFQFKIYVTYIH", "sequence_length": 296, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d0d3e0773a17318cdd6a3fa25e8b15eb8251d3c237d42f0fff5ea298b1d906db", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P33659.json", "taxon_id": "272562", "uniprot_accession": "P33659", "uniprot_release": "2026_03" } ], "pfam_id": "PF10882", "short_name": "bPH_5", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2681-pf10883.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2681-pf10883.yaml" } ], "pfam_ids": [ "PF10883" ], "protein_name": "Uncharacterized protein HI_1496", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMNLILAFSGVIALYGGYLYLRLRQSQKQAATLQKEKEQLQTQKTVAETKVKNYQVKQKNEENLISRSRTSLLERMHNDGDLRD", "sequence_length": 84, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7cf7702481841af57c8f5f3805ae9e59b32844c6841677f92ed32649f3a3fdd1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44220.json", "taxon_id": "71421", "uniprot_accession": "P44220", "uniprot_release": "2026_03" } ], "pfam_id": "PF10883", "short_name": "DUF2681", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2683-pf10884.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10884", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2683-pf10884.yaml" } ], "pfam_ids": [ "PF10884" ], "protein_name": "Putative antitoxin RelB4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MILMVKAIVDITDENNRIINIVKAKYNLRDKSQAINKIIEEYAEFLLEDELKPEYIEKIRNIMKNEKPIYIGSIENLKKRYLGE", "sequence_length": 84, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87a8b6980577da5083616d7d193f6a0c8081086631b084f713ba9c2d7ee8dcfd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58572.json", "taxon_id": "243232", "uniprot_accession": "Q58572", "uniprot_release": "2026_03" } ], "pfam_id": "PF10884", "short_name": "DUF2683", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2685-pf10886.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10886", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2685-pf10886.yaml" } ], "pfam_ids": [ "PF10886" ], "protein_name": "Uncharacterized 6.1 kDa protein in uvsW-uvsY intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDKICVVCKTPIDSALVVETDKGPVHPGPCYNYIKELPVSESSEEQLNETQLLL", "sequence_length": 55, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ab0be5adb66fb5eae175744026c2728c2ff39e3f034a368b8cc3460bbb388040", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q00778.json", "taxon_id": "10665", "uniprot_accession": "Q00778", "uniprot_release": "2026_03" } ], "pfam_id": "PF10886", "short_name": "DUF2685", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2686-pf10887.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10887", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2686-pf10887.yaml" } ], "pfam_ids": [ "PF10887" ], "protein_name": "Uncharacterized protein YjfZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLPTTIYSFPAYLSRFSSTDKPVKLKFHQYARATLLSNRGRDHNCDGRRTVEIHKLDLSDWQAFNKLATRCNAYDGITMNGDNSFGWNHEATLDNIHAQKYNKAYAGARLTAELKYLLQDVESFEPNSKYTIHEVVLGPGYGTPDYTGQTIGYVVTLPAQMPNCWSSELPTIDLYIDQLRTVTGVSNALGFIIAALLNAYSDLPHDLKIGLRSLSSSAAIYSGLGFERVPQERDISCARMYLTPANHPDLWTQENGEWIYLRN", "sequence_length": 264, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d818eba8d58d69954ea4ff6eefcdb2e7528357d72588e5790020b4d59b224cc4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P39308.json", "taxon_id": "83333", "uniprot_accession": "P39308", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2686-pf10887.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10887", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2686-pf10887.yaml" } ], "pfam_ids": [ "PF10887" ], "protein_name": "Uncharacterized protein YjiC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSMPLSNALQSQIITDAHFLHHPIVDSEFTRKLKYARMDSENIYLPPLTRGNNHNYDGKSVVEIRKLDISKEPWPFNYVTGACRESDGITTTGRMLYRNLKITSALDEIYGGICKKAHATTELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYAGTTIGYISTLPASQAKRWTNEQPRIDIYIDQIMTVTGVANSSGFALAALLNANIELGNDPIIGIEAYPGTAEIHAKMGYKVIPGDENAPLKRMTLQPSSLPELFELKNGEWNYIGK", "sequence_length": 276, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e30f42b4f67a2ad66339d1fe993242f3703c3dc44439929b46ef6df0777d4bdd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P39374.json", "taxon_id": "83333", "uniprot_accession": "P39374", "uniprot_release": "2026_03" } ], "pfam_id": "PF10887", "short_name": "DUF2686", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2742-pf10888.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10888", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2742-pf10888.yaml" } ], "pfam_ids": [ "PF10888" ], "protein_name": "Uncharacterized protein MT2733", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV", "sequence_length": 130, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e60ef95ca861903580d6cecd6c8eb17859103aaa2032424773b24846d0490847", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WL48.json", "taxon_id": "83331", "uniprot_accession": "P9WL48", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2742-pf10888.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10888", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2742-pf10888.yaml" } ], "pfam_ids": [ "PF10888" ], "protein_name": "Uncharacterized protein MT3573.2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPRAGVA", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e0d6b96e65c31d52874710c403455afd023a84de3295c60a4b4553eee43f517f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLU0.json", "taxon_id": "83331", "uniprot_accession": "P9WLU0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2742-pf10888.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10888", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2742-pf10888.yaml" } ], "pfam_ids": [ "PF10888" ], "protein_name": "Uncharacterized protein Rv1583c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPRAGVA", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e0d6b96e65c31d52874710c403455afd023a84de3295c60a4b4553eee43f517f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLU1.json", "taxon_id": "83332", "uniprot_accession": "P9WLU1", "uniprot_release": "2026_03" } ], "pfam_id": "PF10888", "short_name": "DUF2742", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Solanum tuberosum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cyt-b-c1-8-pf10890.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10890", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cyt-b-c1-8-pf10890.yaml" } ], "pfam_ids": [ "PF10890" ], "protein_name": "Cytochrome b-c1 complex subunit 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQHFLEKEKLEHRY", "sequence_length": 72, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "68690634d90c0e634501431fb5aedc434a5176ef7cf9994d6f6fb9a7a8de665e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P46269.json", "taxon_id": "4113", "uniprot_accession": "P46269", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cyt-b-c1-8-pf10890.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10890", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cyt-b-c1-8-pf10890.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/cytochrome-b-c1-complex-subunit-8-superfamily-ipr036642.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036642", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/cytochrome-b-c1-complex-subunit-8-superfamily-ipr036642.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/cytochrome-b-c1-complex-subunit-8-1-20-5-210.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.5.210", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/cytochrome-b-c1-complex-subunit-8-1-20-5-210.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9FLB7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10890" ], "protein_name": "Cytochrome b-c1 complex subunit 8-2, 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"FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2719-pf10891.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10891", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2719-pf10891.yaml" } ], "pfam_ids": [ "PF10891" ], "protein_name": "Uncharacterized 9.7 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRALRRRFKPAGDERRREENVVLCPRCYFVAPGSISVADYTRMHIKFNEQFADECSNNLAVTQPKTWFNYTNCPLLYYSLC", "sequence_length": 82, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": 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"uniprot_release": "2026_03" } ], "pfam_id": "PF10892", "short_name": "DUF2688", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10893", "short_name": "Phage_186_Fil", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/conjugal-transfer-protein-trbd-nf010280.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF010280", "section": "canonical_examples", "url": 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"sequence_sha256": "87798e4915c5685532750aac9ea73bc02a92bd48886d3cc1f1d709ae8f77bdc8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41070.json", "taxon_id": "83333", "uniprot_accession": "P41070", "uniprot_release": "2026_03" } ], "pfam_id": "PF10894", "short_name": "DUF2689", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Treponema pallidum (strain DSM 117211 / Nichols)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2715-pf10895.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10895", "section": "canonical_examples", "url": 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"canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2714-pf10896.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10896", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2714-pf10896.yaml" } ], "pfam_ids": [ "PF10896" ], "protein_name": "Uncharacterized protein UU049", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKNKSNLTPTTNYFDVFNTYKEKKASVDLITYEELMASVLFDNKLGFESEVYLDFVKKFTLAFEKKLDIWFENFIINFNLNLKFSTTIMIPILVTKANSTTDAINFRNDQNPVYNNFLISYNQKIKKLLLQNHPVQILPHLILFKSNLNGSLVLVFSEKIIASIEQKSGN", "sequence_length": 171, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a86bfdcb7d205ccf456410c94a5f7407a22bcc1b465730c7bde3ba35ac4b53be", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9PR96.json", "taxon_id": "273119", "uniprot_accession": "Q9PR96", "uniprot_release": "2026_03" } ], "pfam_id": "PF10896", "short_name": "DUF2714", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2713-pf10897.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10897", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2713-pf10897.yaml" } ], "pfam_ids": [ "PF10897" ], "protein_name": "Uncharacterized protein YjbM", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWVNKYIDDCTDEDLNDRDFIASVVDRAIFHFAINSICNPGDNKDAMPIEQCTFDVETKNDLPSTVQLFYEESKDNEPLANIHFQAIGSGFLTFVNACQEHDDNSLKLFASLLISLSYSSAYADLSETVYINENNESYLKAQFEKLSQRDMKKYLGEMKRLADGGEMNFDGYLDKMSHLVNEGTLDPDILSKMRDAAPQLISFAKSFDPTSKEEIKILTDTSKLIYDLFGVKSEK", "sequence_length": 235, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6e20cb82e01912919b74e7817d0010c09cca4ba11dda2dbb7d2e876103baa22b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P32694.json", "taxon_id": "83333", "uniprot_accession": "P32694", "uniprot_release": "2026_03" } ], "pfam_id": "PF10897", "short_name": "DUF2713", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2716-pf10898.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2716-pf10898.yaml" } ], "pfam_ids": [ "PF10898" ], "protein_name": "Uncharacterized protein YxiI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMNWRALSQTKQDRIWSEVNKIIKWKPGSRCHHIIPPDPYRVFDISSAMSSKAGHNDVSGVLSDLETSILKAFQLGTGKNDVMYALDWQHDGYTFSPHQAMPKDEFGEWPVPVFPNGDYYFFFHQDFSWGLLGDPWKCAITVFGEELLEAIDNDPPILFRNK", "sequence_length": 162, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a344a5fbafeb81e4c876ac1ef95b429336f875e22e16059e383f746870a9fd98", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P42301.json", "taxon_id": "224308", "uniprot_accession": "P42301", "uniprot_release": "2026_03" } ], "pfam_id": "PF10898", "short_name": "DUF2716", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lactococcus lactis subsp. cremoris", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/abigi-pf10899.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10899", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/abigi-pf10899.yaml" } ], "pfam_ids": [ "PF10899" ], "protein_name": "Abortive phage resistance protein AbiGi", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFLPRYYPENIEYLKISKENTPLKEWYIPMTCFCDIPLHQMSYHAEGKAQTGYGKFSIALHKKFGINNGIQPVQYLNSNSIPTEELRNAISILLSDNGQIYSDEALISLSNHLFEYMRRIKPLDGSMKKWDKEGKKYVEIKKNFHDEHEWRYIPDFESDELPFLLYRQDDIIAESSSQFYTKSITETKNGLLNFSVSDIRYIFVDSILSREKLISFIKRKQKGKRIPRAEKDILISKILVYDEIKEDW", "sequence_length": 249, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ca32157024263d6ccf9ad58c0a2c9a9227c81f8ffa2142fac56b926a1aac59ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q48725.json", "taxon_id": "1359", "uniprot_accession": "Q48725", "uniprot_release": "2026_03" } ], "pfam_id": "PF10899", "short_name": "AbiGi", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2690-pf10901.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10901", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2690-pf10901.yaml" } ], "pfam_ids": [ "PF10901" ], "protein_name": "Uncharacterized protein YjfA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRLFMKASLVLFAVVFVFAVKGAPAKAETHAYDGKSPYYNDCASSGSTKKSSNLVNASNQVIGVVELKFSSTCKTAWAKITMNNTLTSGYEANAEITRNTDGKRYNCDSAGGNGKAVAGQKSCYTPMVYDLDPRTSYAFGKYSGPNLNVWATTGSY", "sequence_length": 157, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b2c9e1d638c1793eaec30ac6282a58d05f7aaaf6adce020fbc47819763763124", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34554.json", "taxon_id": "224308", "uniprot_accession": "O34554", "uniprot_release": "2026_03" } ], "pfam_id": "PF10901", "short_name": "DUF2690", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10902", "short_name": "WYL_2", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2691-pf10903.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10903", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2691-pf10903.yaml" } ], "pfam_ids": [ "PF10903" ], "protein_name": "Uncharacterized protein YncE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNRGVSFQIPNEYGNFLWRILQPVEIANYRWQTSGESYFVVEGELDDEELFHDYEIVEGAVFEQQLKTNQYYTIFVELKAFPYGKMVNQVNTYEEFADSDCELVLLIADNSYVSIYCKNKNIIEKLYFNALQHDFEDVQFITDENDTRTSLTV", "sequence_length": 153, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6405bc7f82c30530d45739650d13438157328eb0828d51b9758a40b7766fd91e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P94495.json", "taxon_id": "224308", "uniprot_accession": "P94495", "uniprot_release": "2026_03" } ], "pfam_id": "PF10903", "short_name": "DUF2691", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2694-pf10904.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2694-pf10904.yaml" } ], "pfam_ids": [ "PF10904" ], "protein_name": "Uncharacterized protein Mb0029", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKALLEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRNR", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d5233e09fce91dbdf78d0e34f546fb9d0f2bb95956073924614b4368b7b3354e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64670.json", "taxon_id": "233413", "uniprot_accession": "P64670", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2694-pf10904.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2694-pf10904.yaml" } ], "pfam_ids": [ "PF10904" ], "protein_name": "Uncharacterized protein MT0030.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKALLEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRNR", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d5233e09fce91dbdf78d0e34f546fb9d0f2bb95956073924614b4368b7b3354e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM96.json", "taxon_id": "83331", "uniprot_accession": "P9WM96", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2694-pf10904.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2694-pf10904.yaml" } ], "pfam_ids": [ "PF10904" ], "protein_name": "Uncharacterized protein Rv0028", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKALLEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRNR", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d5233e09fce91dbdf78d0e34f546fb9d0f2bb95956073924614b4368b7b3354e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM97.json", "taxon_id": "83332", "uniprot_accession": "P9WM97", "uniprot_release": "2026_03" } ], "pfam_id": "PF10904", "short_name": "DUF2694", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2695-pf10905.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10905", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2695-pf10905.yaml" } ], "pfam_ids": [ "PF10905" ], "protein_name": "Uncharacterized protein Mb2294", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTPPDKARRRFLRDAYKNAERVARTALLTIDQDQLEQLLDYVDERLGEQPCDHTARHAQRWAQSHRIEWETLAEGLQEFGGYCDCEIVMNVEPEAIFG", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "45c4d58c7033ddb0370f6a523fadf269634b586d6c82f52195ac231662545df3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64968.json", "taxon_id": "233413", "uniprot_accession": "P64968", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2695-pf10905.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10905", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2695-pf10905.yaml" } ], "pfam_ids": [ "PF10905" ], "protein_name": "Uncharacterized protein MT2332", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTPPDKARRRFLRDAYKNAERVARTALLTIDQDQLEQLLDYVDERLGEQPCDHTARHAQRWAQSHRIEWETLAEGLQEFGGYCDCEIVMNVEPEAIFG", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "45c4d58c7033ddb0370f6a523fadf269634b586d6c82f52195ac231662545df3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLF6.json", "taxon_id": "83331", "uniprot_accession": "P9WLF6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2695-pf10905.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10905", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2695-pf10905.yaml" } ], "pfam_ids": [ "PF10905" ], "protein_name": "Uncharacterized protein Rv2271", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTPPDKARRRFLRDAYKNAERVARTALLTIDQDQLEQLLDYVDERLGEQPCDHTARHAQRWAQSHRIEWETLAEGLQEFGGYCDCEIVMNVEPEAIFG", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "45c4d58c7033ddb0370f6a523fadf269634b586d6c82f52195ac231662545df3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLF7.json", "taxon_id": "83332", "uniprot_accession": "P9WLF7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10905", "short_name": "DUF2695", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mrx7-pf10906.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10906", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mrx7-pf10906.yaml" } ], "pfam_ids": [ "PF10906" ], "protein_name": "MIOREX complex component 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPRSIEEWFYYKLLSSPGFHRFVRKVYRKVNGIKEDPFTDQSTAFQYLYKPTPRQKFKALRLLFWDEMRSTFGFRRRLGDRFKKD", "sequence_length": 86, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d772867a4d0d1e1276f46a4483bd42a53ff9b1cf47e2447f258b556001018085", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53869.json", "taxon_id": "559292", "uniprot_accession": "P53869", "uniprot_release": "2026_03" } ], "pfam_id": "PF10906", "short_name": "Mrx7", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Agrobacterium tumefaciens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2749-pf10907.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10907", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2749-pf10907.yaml" } ], "pfam_ids": [ "PF10907" ], "protein_name": "Conjugal transfer protein TrbJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPIHSSRPTRLARHAMIAAILLSSTSPMPAVAGGVTGQATEWTQLANNTELISLVGKSAEQVNNQITQISQLAEQIQNQLNIYRNMLQNTAQLPNHIWGQVENDLKNLQNVVNEGQGVAFSMGNVEDVMKQRFQSFAEMKSNLPDGASFSTTYQNWSGTNRDTIAGTLKAANLTSEQFSSEESTMSSLRSMSESSDGQMKALQVGHQIAAQQVAQMQKLRGLVSQQMTMMGTWYQSEQAQKDLAQARREQFFSGTEHDIRGGQTMEPRW", "sequence_length": 269, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b024d5b7b6d8222a1279351ed9157c9612712766c23b5e4715e5cbb17d81e45b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P54911.json", "taxon_id": "358", "uniprot_accession": "P54911", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Agrobacterium tumefaciens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2749-pf10907.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10907", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2749-pf10907.yaml" } ], "pfam_ids": [ "PF10907" ], "protein_name": "Conjugal transfer protein TrbK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSRLIVILALLAVVAAASAGIGTWITVQPEPASGSGAAATDTPSSEERRRHRDQFFGGDSNREIRGGQEMKPRW", "sequence_length": 75, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ec968cdc107f0980a483e378eba14857e10016aebb220d0e7e481393b6c39c09", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54912.json", "taxon_id": "358", "uniprot_accession": "P54912", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sinorhizobium fredii (strain NBRC 101917 / NGR234)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2749-pf10907.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10907", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2749-pf10907.yaml" } ], "pfam_ids": [ "PF10907" ], "protein_name": "Probable conjugal transfer protein TrbK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRAVIIALVILVAAVSTTATALIVNSRASNPSAPEEQRTAKEKFFGAGKALPPIKDGQEMGPRW", "sequence_length": 65, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1faafae6252ff5a828f7536e635993b7957c16efebe37ff4f5baa6a3c48e7e8c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P55401.json", "taxon_id": "394", "uniprot_accession": "P55401", "uniprot_release": "2026_03" } ], "pfam_id": "PF10907", "short_name": "DUF2749", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10908", "short_name": "Tlde1_dom", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2682-pf10909.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10909", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2682-pf10909.yaml" } ], "pfam_ids": [ "PF10909" ], "protein_name": "Uncharacterized 11.5 kDa protein in IAP2-VLF1 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTSVDVVTKLIHLQNNVLDIMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIESNAIVFDEKSKNLKIIHNNINMCLNWCINLITIKHYVQ", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aa31622b5b6c719f496ecbec019c77eb02d0b9cf59a947722fcc3917ac941286", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41472.json", "taxon_id": "46015", "uniprot_accession": "P41472", "uniprot_release": "2026_03" } ], "pfam_id": "PF10909", "short_name": "DUF2682", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10910", "short_name": "Phage_gene29", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10911", "short_name": "T7-like_Y65", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/glam1-pf10912.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10912", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/glam1-pf10912.yaml" } ], "pfam_ids": [ "PF10912" ], "protein_name": "Glia associated membrane protein glam-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTQIPMDPPKFLCMPARPLVVGLAVFGAIRSFVQFWMSSGFGMAGTHFCVLLLDLLLLFGAYKNDVFALKWSQRVTFACVLIAIIRFMIYPVVFASYMASGLSRNFTGIDSEEIEILGNVTTPEQNFVFGMISGFTLEFATALSIGVESLKYLLVHRLWEYAKATEASSSSRYVIP", "sequence_length": 177, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "53e65c3193ed77844631a17bb91af80c541fb68947795bbd7db552c3ea21a6fe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q86DA7.json", "taxon_id": "6239", "uniprot_accession": "Q86DA7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10912", "short_name": "Glam1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2706-pf10913.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10913", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2706-pf10913.yaml" } ], "pfam_ids": [ "PF10913" ], "protein_name": "Uncharacterized protein RP288", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKSLKFLLVFIILAQLLSCTPSAPYEIKSPCVSVDIDDNSSLSINPCIRRPINAVNIV", "sequence_length": 59, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "29bdfcf4912227594dd0cf54e010f4c5f220abbe4a07bcf62d103d6e6bda7199", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZDN9.json", "taxon_id": "272947", "uniprot_accession": "Q9ZDN9", "uniprot_release": "2026_03" } ], "pfam_id": "PF10913", "short_name": "DUF2706", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2709-pf10915.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10915", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2709-pf10915.yaml" } ], "pfam_ids": [ "PF10915" ], "protein_name": "Uncharacterized protein CT_538", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNISGSIKQKLLQFLKKQKSPELLATYLFYLEQSLHLSPVVFVRDKIIFKSAEDAIQLLEADKKIWRETEIQISSGKPEVNEQTKRIYICPFTGKVFADNVYANPQDAIYDWLSSCPQNRERQSGVAVKRFLVSDDPEVIRAYIVPPKEPIIKTVYASAVTGKLFHSLPTLLEDFKTSYLRPMTLEEVQNQNKFQLESSFLTLLQDALEEEKIAEFVESLADDTAFHKYISQWVDTEE", "sequence_length": 238, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "062f39029361aec38b24b81fa1982a66ce7d5fedaa424a03af643d0cabbc6fd1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O84543.json", "taxon_id": "272561", "uniprot_accession": "O84543", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia muridarum (strain MoPn / Nigg)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2709-pf10915.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10915", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2709-pf10915.yaml" } ], "pfam_ids": [ "PF10915" ], "protein_name": "Uncharacterized protein TC_0825", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNISGSIKQKLLQFLKKQKSPELLATYLFYLEQSLHLSPVVFVRDKVIFKSAEDAIALLEADKKIWRETEIQISSGKPEVNEQTKRIYICPFTGKVFADNVYANPLDAVYDWLSSCPQNKERQAGVAVKRFLVSDDPEVIRAYIVPPKEPLIKTVYASAITGKLFHSLPTLLEDFKTSYLRPMTLEEVQNQNKFQLESSFLTLLQDALEEEKIAEFVESLADDTAFHEYISQWVDTEE", "sequence_length": 238, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fa48e6620049f90221e7ee79e2544c090d894fabd6a6ed30756b922f79422758", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9PJK4.json", "taxon_id": "243161", "uniprot_accession": "Q9PJK4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2709-pf10915.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10915", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2709-pf10915.yaml" } ], "pfam_ids": [ "PF10915" ], "protein_name": "Protein CPn_0658/CP_0089/CPj0658/CpB0684", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDISGAVKQKLLQFLGKQKKPELLATYLFYLEQALSLRPVVFVRDKIIFKTPEDAVRILEQDKKIWRETEIQISSEKPQVNENTKRIYICPFTGKVFADNVYANPQDAIYDWLSSCPQNMEKQGGVRIKRFLVSEDPDVIKEYAVPPKEPIIKTVFASAITGKLFHSLPPLLEDFISSYLRPMTLEEVQNQTKFQLESSFLSLLQDALVEDKIAAFIESLADDTAFHVYISQWVDTEE", "sequence_length": 238, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "71653166f34a698ea7e5e635ee3f55faac6ff169be372729d4758196b304ad58", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z7P6.json", "taxon_id": "83558", "uniprot_accession": "Q9Z7P6", "uniprot_release": "2026_03" } ], "pfam_id": "PF10915", "short_name": "DUF2709", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2712-pf10916.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10916", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2712-pf10916.yaml" } ], "pfam_ids": [ "PF10916" ], "protein_name": "Uncharacterized protein YybN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKFLKSNFRFLLAAALGISLLASSNFIKASNDNYKFHLLVPYGYGNAYSNDAFRQTTHTDNPWKVNLQKSAEGKGTIMTFWLINTGNSKIPKASKIHNVKQGSGAHYYHANSQGSHTYVALAVENNNYSASSYGIDGVWDEETW", "sequence_length": 145, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4b2c4e5a8d367a16b8d3ca1f29e949cd44eb12f146c25638f7d3f8c41b166424", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37490.json", "taxon_id": "224308", "uniprot_accession": "P37490", "uniprot_release": "2026_03" } ], "pfam_id": "PF10916", "short_name": "DUF2712", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fungus-induced-pf10917.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10917", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fungus-induced-pf10917.yaml" } ], "pfam_ids": [ "PF10917" ], "protein_name": "Fungus-induced protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNVYSVFIFAILAISSASGIFLPGGGGKKCGGYGGGYGSGVIIGAERPKK", "sequence_length": 50, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "143e12047203f367b422f0f7ffcd2c99d94188c73f100f6068672a4de546365a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P34300.json", "taxon_id": "6239", "uniprot_accession": "P34300", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fungus-induced-pf10917.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10917", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fungus-induced-pf10917.yaml" } ], "pfam_ids": [ "PF10917" ], "protein_name": "Fungus-induced-related protein 16", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIVYSVFIFAVLAISSVTGIFLPGGGGKKCGGHGEYGSGVIIGAERPKK", "sequence_length": 49, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "43c0934411a88145836a2a707a0afeab221c466792f9ffa07c4ef8708cb573a5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P34301.json", "taxon_id": "6239", "uniprot_accession": "P34301", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fungus-induced-pf10917.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10917", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fungus-induced-pf10917.yaml" } ], "pfam_ids": [ "PF10917" ], "protein_name": "Fungus-induced-related protein 15", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNFYSLFVFIALIFSFNVVHGHRCHRGGNGGYGGGSGEVVVIGAEKPKDK", "sequence_length": 50, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1d6f2cff693a874384a2b90fe3f26596a5cea04813e9004fe2ae285143407b59", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q19408.json", "taxon_id": "6239", "uniprot_accession": "Q19408", "uniprot_release": "2026_03" } ], "pfam_id": "PF10917", "short_name": "Fungus-induced", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sheeppox virus (strain KS-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2718-pf10918.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10918", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2718-pf10918.yaml" } ], "pfam_ids": [ "PF10918" ], "protein_name": "T3C protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLCIFYIARLCNLIIYSLYSLLMFPMQKLISFMFGNLNPFDSVLDKDEKIQDNINTNHKPIESKEINNDLPLTVLDKKDTSDINIRNDNGVFDFIKIPNPFKKHYEYYCNQNTIKEPPRKGLVERMMNMVE", "sequence_length": 131, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d0bbcdb4d907630d971df30091ba314d5ff320e9092bc56f3311c6a48f7e6e5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P18388.json", "taxon_id": "10269", "uniprot_accession": "P18388", "uniprot_release": "2026_03" } ], "pfam_id": "PF10918", "short_name": "DUF2718", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2705-pf10920.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10920", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2705-pf10920.yaml" } ], "pfam_ids": [ "PF10920" ], "protein_name": "Uncharacterized protein YybK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRIKGFFITLVAIIFQASLSSYNNNKNVFPFLDGIPISTSGHYEYQNILLWFVPIVSLSFCFSGSIRDTYISYEQLKLVREHSRVKWVTSQFLIITVVLLIFTLSQIAIFYIYSLVSLHNLDINSVINKRFVMMTLMYYLTLLNLFSFQLFMELYYKSQIAQLNISVYIIFSLILAKKLVQLNSPKVIHYFLIPNYSNGLRTGLSYYSQSGTAIIEPLLGLFIIIILQISIVILSVLKFKKIDMLKSEGLQ", "sequence_length": 251, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3e575dc280fb51ac87efd8a3f17841d4b0f58003fc38c047c201770f9bd92c78", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37493.json", "taxon_id": "224308", "uniprot_accession": "P37493", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2705-pf10920.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10920", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2705-pf10920.yaml" } ], "pfam_ids": [ "PF10920" ], "protein_name": "Uncharacterized protein YhcI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLNLIYNEWLKIFSRAGTWVMIGILGLTMVGFAFLANHFSAGESNSHWKQELQAQNAELKKEIKEDPSLKDGYKETITLNDYRIEHNIPSDTGYTVWSYVTDSANFTILTGLFTIIIAAGIVANEFNWGTIKLLMIRPLSRFQILMSKYITVLLFGLLLLLILFIGSTLLGLIFFGTGGETAANIHLIYKDGHVIEQNMMGHLATTYLSESVSALMVATMAFMLSAVFRNSSLAVGFSIFLLVAGTTATAFIAAKFDWAKYILFANVDLTQYVDGTPLIKGMTMTFSLVMLAIYFIIFLLLAFGIFMKRDIAN", "sequence_length": 313, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3c30685bef1cfa98426e7ae0e8e120f8f5e2cef5e1cf0158a76879fe4ff2425b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54593.json", "taxon_id": "224308", "uniprot_accession": "P54593", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2705-pf10920.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10920", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2705-pf10920.yaml" } ], "pfam_ids": [ "PF10920" ], "protein_name": "Uncharacterized membrane protein YdbK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLFNRKVTLVSLILMAVFQFFMALIIKRIVISAGTDENFIGYLSYTPSLNILLQALTIVIAATIVSMEFDKKTIKFLLIRPVKRQKVFWSKLITVVMVSFYLYLAYYILALLFGLLFFGTSVTAESKTLLVNTLALIGSNWLEAVMMGLFGLLCSSLFRNSAVAVVVSFVVLYGASTLVQLMKLFENKWGSFLLFANTDFTQYRSGETALFSGMTPLFSIGILIIHAIFFIVVGWWCFCKRDVRV", "sequence_length": 246, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f785404f84651e52047021387b3e7b2f7c9774ea0125a3629a07fb80a1ea55aa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P96606.json", "taxon_id": "224308", "uniprot_accession": "P96606", "uniprot_release": "2026_03" } ], "pfam_id": "PF10920", "short_name": "DUF2705", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2710-pf10921.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10921", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2710-pf10921.yaml" } ], "pfam_ids": [ "PF10921" ], "protein_name": "Uncharacterized protein Mb0031", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ", "sequence_length": 109, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "671461304a9ff2693b7c0921bf23a0e749206411629c78ca18166daa933c4563", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64672.json", "taxon_id": "233413", "uniprot_accession": "P64672", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2710-pf10921.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10921", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2710-pf10921.yaml" } ], "pfam_ids": [ "PF10921" ], "protein_name": "Uncharacterized protein MT0034", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ", "sequence_length": 109, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "671461304a9ff2693b7c0921bf23a0e749206411629c78ca18166daa933c4563", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM94.json", "taxon_id": "83331", "uniprot_accession": "P9WM94", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2710-pf10921.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10921", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2710-pf10921.yaml" } ], "pfam_ids": [ "PF10921" ], "protein_name": "Uncharacterized protein Rv0030", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ", "sequence_length": 109, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "671461304a9ff2693b7c0921bf23a0e749206411629c78ca18166daa933c4563", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM95.json", "taxon_id": "83332", "uniprot_accession": "P9WM95", "uniprot_release": "2026_03" } ], "pfam_id": "PF10921", "short_name": "DUF2710", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10922", "short_name": "T7-like_gp12", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10923", "short_name": "BrxC_BrxD", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2711-pf10924.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10924", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2711-pf10924.yaml" } ], "pfam_ids": [ "PF10924" ], "protein_name": "Uncharacterized protein YwbB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDYIWLDDESPILQQVPVEYSSAALIFSPFIQMPEGWENAKRKNDYEHIYPNDNEIRGIGKAVSWKKVMSSCGFQTHAELALALMTSIGALRDEFAREDLAEVLHENINGDLYYPSEDHISNFHIPSLVKVLGANGSNRFYYAEPIVENRGVLDITEANLRTVLDEAATELVLTDEKMDFVFMSVYDSFINVFLAKDKNIHELVERMGWEAMICDESTYISWYR", "sequence_length": 225, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b69913dccc723974ddcfcbb7d9f92a4b48ca22b9d5ba2cb41208770be57df050", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P39585.json", "taxon_id": "224308", "uniprot_accession": "P39585", "uniprot_release": "2026_03" } ], "pfam_id": "PF10924", "short_name": "DUF2711", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2680-pf10925.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10925", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2680-pf10925.yaml" } ], "pfam_ids": [ "PF10925" ], "protein_name": "Uncharacterized protein YckD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRITINIITMFIAAAVISLTGTAEAAEKQQQSPANVTLTDQQKKEIEQLEAEILKKRKDVISKYVQYGILPKERGEHIKNHLDKHFEMMKQNGFVPKHHPHPHKFEKRH", "sequence_length": 110, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c2aa80606489aaac8090cf5a800efe1c0e43800be77f002915e46e491bddfeb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P42402.json", "taxon_id": "224308", "uniprot_accession": "P42402", "uniprot_release": "2026_03" } ], "pfam_id": "PF10925", "short_name": "DUF2680", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acyrthosiphon pisum secondary endosymbiont phage 1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2800-pf10926.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2800-pf10926.yaml" } ], "pfam_ids": [ "PF10926" ], "protein_name": "Probable 5'-3' exonuclease p51", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MINQRVAMAEHAKLAPSSAHRWLKCPGSTALEATLPDKTSPFAEEGSAAHALAESILKMRQNPFSDGRRRTYGFDVKEYIGTYPLLKANSPQVDEEMIEHVQTYIDTVWQLANGKMLQVEERVDFSAVIGVDNSFGTADAIIVSSDELQIHDLKYGKGVKVDAQNNEQLMLYALGALHQFDLVYDFKTVRLFIHQPRLNHLSEWAVSVEDLKDFGEQAKSGAQKAMKMATLAERSGLDALPDSAFSPGVKQCLFCKAKGGLCFAQAQFVHNEVKGDFVDLTQPLAPQLSDAPKRITLLTPEKMAKLYPHVDLIESFCKALRNRVAEALHTGQSVPGFKLVTGKQGNRTWGDEREAETLLKGAKLKQEQIYHKKIISPPQAEKLLKKDKPHRWAKLEALIERADGKPVIAPESDPRPAIITTPLNDFDDVTEAALVDKSI", "sequence_length": 439, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ec17f80656543598a0f28a9ebbec109f2b3072ca331262afcfe4d6906586e5c3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9T1P7.json", "taxon_id": "2682836", "uniprot_accession": "Q9T1P7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10926", "short_name": "DUF2800", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Frog virus 3 (isolate Goorha)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2738-pf10927.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10927", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2738-pf10927.yaml" } ], "pfam_ids": [ "PF10927" ], "protein_name": "Early 31 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDPTSFDKTKLCFGKPTKFSKVAGAHIINIRYEDKVTKAKVPLSFHTPILFSFGAKTSSFQDGDDNWSMSLMCYDTNKGPSPQETAFIKALEAIECRVKKHLKDKDVKKATEMYQDPLIDMMSMFYRKMEDGVVVPDRAPALYPKLLKSKNNPGQVATGFYKFVRGKEVKIPVVKEKCRVLCDLAIDSIFLGAKPSIQIKLVDVFLVELIGERKKTLKLSKLPSAVQAEINKYSADTDEEEEEEEDNAEDTEEEEEEEADQ", "sequence_length": 261, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "51e5c6efb49a2278806a921689898c1305a66741835234b667801ab519622ddd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P18178.json", "taxon_id": "654924", "uniprot_accession": "P18178", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2738-pf10927.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10927", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2738-pf10927.yaml" } ], "pfam_ids": [ "PF10927" ], "protein_name": "Uncharacterized protein 007R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAKNITIDNTTYNFFKFYNINQPLTNLKYLNSERLCFSNAVMGKIVDDASTITITYHRVYFGISGPKPRQVADLGEYYDVNELLNYDTYTKTQEFAQKYNSLVKPTIDAKNWSGNELVLLVGNEWYCKTFGKAGSKNVFLYNMIPTIYRDEPQHQEQILKKFMFFNATKNVEQNPNFLDNVPEEYYHLLLPKSWVEKNLSDKYRKIMETEHKPLVFSCEPAFSFGLCRNTQDKNESYQLSLCLYEREKPRDAEIVWAAKYDELAAMVRDYLKKTPEFKKYRSFISCMKGLSWKNNEIGDKDGPKLYPKVIFNRKKGEFVTIFTKDDDVEPETIEDPRTILDRRCVVQAALRLESVFVHNKVAIQLRINDVLISEWKEASSKPQPLILRRHRFTKPSSSVAKSTSPSLRNSGSDESDLNQSDSDKEDERVVPVPKTKRIVKTVKLPN", "sequence_length": 447, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "85f8b57619ef11dcecbd56132055f8b3637d470905a7199218c89c42ac91a5db", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q197F3.json", "taxon_id": "345201", "uniprot_accession": "Q197F3", "uniprot_release": "2026_03" } ], "pfam_id": "PF10927", "short_name": "DUF2738", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/yibl-family-ribosome-associated-protein-nf008244.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008244", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/yibl-family-ribosome-associated-protein-nf008244.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2810-pf10928.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10928", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2810-pf10928.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/uncharacterised-protein-pf10928-duf2810-3-30-1370-150.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.1370.150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/uncharacterised-protein-pf10928-duf2810-3-30-1370-150.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/uvr-domain-4-10-860-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:4.10.860.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/uvr-domain-4-10-860-10.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0ADK8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10928" ], "protein_name": "Uncharacterized protein YibL", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d1b53992cf79494c4020cf73641a974ec8f0f99befbf0f27b16deb5542987ed4", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTAF", "sequence_length": 120, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d1b53992cf79494c4020cf73641a974ec8f0f99befbf0f27b16deb5542987ed4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADK8.json", "taxon_id": "83333", "uniprot_accession": "P0ADK8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2810-pf10928.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10928", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2810-pf10928.yaml" } ], "pfam_ids": [ "PF10928" ], "protein_name": "Uncharacterized protein YibL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTAF", "sequence_length": 120, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d1b53992cf79494c4020cf73641a974ec8f0f99befbf0f27b16deb5542987ed4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADK9.json", "taxon_id": "199310", "uniprot_accession": "P0ADK9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2810-pf10928.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10928", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2810-pf10928.yaml" } ], "pfam_ids": [ "PF10928" ], "protein_name": "Uncharacterized protein YibL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTAF", "sequence_length": 120, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d1b53992cf79494c4020cf73641a974ec8f0f99befbf0f27b16deb5542987ed4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADL0.json", "taxon_id": "83334", "uniprot_accession": "P0ADL0", "uniprot_release": "2026_03" } ], "pfam_id": "PF10928", "short_name": "DUF2810", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10929", "short_name": "DUF2811", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella phage P22", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2737-pf10930.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10930", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2737-pf10930.yaml" } ], "pfam_ids": [ "PF10930" ], "protein_name": "Uncharacterized 6.6 kDa protein in eae-abc2 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRGLAYNPDILPAELIIRHKIKPMPTREELLQRNSFPSINENKYLNAILRKDKCNR", "sequence_length": 56, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "511f2105db0bddf4f6a7c6266253b1d5a67d0f91c241d5abd557390749c754d5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P11192.json", "taxon_id": "10754", "uniprot_accession": "P11192", "uniprot_release": "2026_03" } ], "pfam_id": "PF10930", "short_name": "DUF2737", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhizobium leguminosarum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2735-pf10931.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10931", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2735-pf10931.yaml" } ], "pfam_ids": [ "PF10931" ], "protein_name": "Glutamine synthetase translation inhibitor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPTGFHRESATIYQFPVKAIRNANRFERARLMEREAAEVCDAALDSCWYHDEAVRESDRPTKS", "sequence_length": 63, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "637f23e60774aa44644de5d73d59a7b12a40f1410b90002ed1058ea9e75e9000", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9K4V1.json", "taxon_id": "384", "uniprot_accession": "Q9K4V1", "uniprot_release": "2026_03" } ], "pfam_id": "PF10931", "short_name": "DUF2735", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10932", "short_name": "DUF2783", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10933", "short_name": "DUF2827", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sheath-initiator-pf10934.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10934", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sheath-initiator-pf10934.yaml" } ], "pfam_ids": [ "PF10934" ], "protein_name": "Uncharacterized protein YqbS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALSPEIEFEDIEDDSEVIETSQTYKIDFENGRITNEIITGLEAIKQFVYLSLHTERYAYSVYSHDIGNELQDVLADNETTDAYKKMEIPRLIEEALIYDDRISAVTDFEIEKQGESFRVSFTVETDEGTLEIEEVLGEDV", "sequence_length": 141, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "68afb024a66be09cf91c6e70437d05244a5a5a0ca07741e8d43d48520f786bfd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P45934.json", "taxon_id": "224308", "uniprot_accession": "P45934", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sheath-initiator-pf10934.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10934", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sheath-initiator-pf10934.yaml" } ], "pfam_ids": [ "PF10934" ], "protein_name": "Phage-like element PBSX protein XkdS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALTPEVEFEDIEVESEVIETSQTYKIDFENGRITNELITGLEAIRQFVYIALQTERYAYSIYSHNVGNELQDVLTDHETTDAYKKMEIPRLIEEALVYDDRISAVTDFEIEKQGDAFHVSFVVETDEGTLEIEEVIGEDV", "sequence_length": 141, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d92a59cf86f1f3a6e077a0c124e972eb1ac26d9062c798efc9962e32424a1e2c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54338.json", "taxon_id": "224308", "uniprot_accession": "P54338", "uniprot_release": "2026_03" } ], "pfam_id": "PF10934", "short_name": "Sheath_initiator", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium phage D29", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2637-pf10935.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10935", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2637-pf10935.yaml" } ], "pfam_ids": [ "PF10935" ], "protein_name": "Gene 34.1 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKILSRDKVALKVATAGTVAVGGLAFSLSFTALSELSAANGVAQSWMVPLVIDGGILVATMATVALSRHGWYAWALLILSSLMSVAGNVAHAQPHGLIAMVIAAIPPLWLLASTHLTVLLYREAQESGSESISEPLLTRGFAEAA", "sequence_length": 145, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5436cf4b1de142e1e7f60496ac1ec2e562f930706f108caa71489f8ea01fd742", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O64228.json", "taxon_id": "28369", "uniprot_accession": "O64228", "uniprot_release": "2026_03" } ], "pfam_id": "PF10935", "short_name": "DUF2637", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2617-pf10936.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2617-pf10936.yaml" } ], "pfam_ids": [ "PF10936" ], "protein_name": "Uncharacterized protein Mb2629", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLHQLAIAPVDVSGALLGLVLNAPAPRPLATHRLAHTDGSALQLGVLGASHVVTVEGRFCEEVSCVARSRGGDLPESTHAPGYHLQSHTETHDEAAFRRLARHLRERCTRATGWLGGVFPGDDAALTALAAEPDGTGWRWRTWHLYPSASGGTVVHTTSRWRP", "sequence_length": 164, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a0ef065f5387b438b7660878c991bfdd0c7e5c234234d204bf715b5a7969bf8d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P65032.json", "taxon_id": "233413", "uniprot_accession": "P65032", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2617-pf10936.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2617-pf10936.yaml" } ], "pfam_ids": [ "PF10936" ], "protein_name": "Uncharacterized protein MT2673.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLHQLAIAPVDVSGALLGLVLNAPAPRPLATHRLAHTDGSALQLGVLGASHVVTVEGRFCEEVSCVARSRGGDLPESTHAPGYHLQSHTETHDEAAFRRLARHLRERCTRATGWLGGVFPGDDAALTALAAEPDGTGWRWRTWHLYPSASGGTVVHTTSRWRP", "sequence_length": 164, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a0ef065f5387b438b7660878c991bfdd0c7e5c234234d204bf715b5a7969bf8d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WL70.json", "taxon_id": "83331", "uniprot_accession": "P9WL70", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2617-pf10936.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2617-pf10936.yaml" } ], "pfam_ids": [ "PF10936" ], "protein_name": "Uncharacterized protein Rv2598", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLHQLAIAPVDVSGALLGLVLNAPAPRPLATHRLAHTDGSALQLGVLGASHVVTVEGRFCEEVSCVARSRGGDLPESTHAPGYHLQSHTETHDEAAFRRLARHLRERCTRATGWLGGVFPGDDAALTALAAEPDGTGWRWRTWHLYPSASGGTVVHTTSRWRP", "sequence_length": 164, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a0ef065f5387b438b7660878c991bfdd0c7e5c234234d204bf715b5a7969bf8d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WL71.json", "taxon_id": "83332", "uniprot_accession": "P9WL71", "uniprot_release": "2026_03" } ], "pfam_id": "PF10936", "short_name": "DUF2617", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/kgd4-ymr31-pf10937.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10937", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/kgd4-ymr31-pf10937.yaml" } ], "pfam_ids": [ "PF10937" ], "protein_name": "Alpha-ketoglutarate dehydrogenase subunit 4, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVRKILIDFTKHITKSSLERHPHPAASFPLPASFTTVDSGPAKHSTAPPATPETSILVEDRNELPLRFHRLPVSEAEMQAVESGGAYAF", "sequence_length": 89, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8aa5e7c6fc098fd5837394353393ed63edd4dc014a6b66fe1ce258255899a7bf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G2TRP3.json", "taxon_id": "284812", "uniprot_accession": "G2TRP3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/kgd4-ymr31-pf10937.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10937", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/kgd4-ymr31-pf10937.yaml" } ], "pfam_ids": [ "PF10937" ], "protein_name": "Alpha-ketoglutarate dehydrogenase subunit 4, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIATPIRLAKSAYEPMIKFVGTRHPLVKHATEVVVHPCATNGMLPGSKECIPVSKFMENYKPFRVVPIKHSANAGLSSSKTSVFVNRPLQKDELASIFELPARFRYKPINEHELESINSGGAW", "sequence_length": 123, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5751aacd9f5a9db77e0d3e85a5fb5edaf782fcbe0f852f2a192a2628f782da50", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P19955.json", "taxon_id": "559292", "uniprot_accession": "P19955", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/kgd4-ymr31-pf10937.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10937", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/kgd4-ymr31-pf10937.yaml" } ], "pfam_ids": [ "PF10937" ], "protein_name": "Alpha-ketoglutarate dehydrogenase component 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSKMASATRVVQVVKPHAPLIKFPNRRDKPKLSASEALGSAALPSHSSAISQHSKGSTSPDLLMHQGPPDTAEIIKSLPQKYRRKPMSQEEMEFIQRGGPE", "sequence_length": 102, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "45cfea00399a023c1c343e96816cc2caa7384530004603a62a311fbfb6025144", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CQX8.json", "taxon_id": "10090", "uniprot_accession": "Q9CQX8", "uniprot_release": "2026_03" } ], "pfam_id": "PF10937", "short_name": "Kgd4-YMR31", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2631-pf10939.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2631-pf10939.yaml" } ], "pfam_ids": [ "PF10939" ], "protein_name": "Uncharacterized protein MT2944.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFGQWEFDVSPTGGIAVASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAVVLFVLARDLWGRRRGWIR", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1855a705af6633c5b129d990e8480cb69865576fb5c682cc7eeba415acf59c09", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WL38.json", "taxon_id": "83331", "uniprot_accession": "P9WL38", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2631-pf10939.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2631-pf10939.yaml" } ], "pfam_ids": [ "PF10939" ], "protein_name": "Uncharacterized membrane protein Cgl2017/cg2211", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGSSHTIEPEIYRGVSTLDEPSAAWGWHGLKRNTIQLAGWISVLFMLGYNFGNHKGHVETIWLLVITALLVIGLLIHLFEPKLSQVRTITSRNKPVGHVEPDWTYDQATLTGTWGNLTDSQLRSVNIEPSRVAHLRAADSAKELDN", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2f64a144e5441cf9186015328ddafe322d50b33b58327e8ae1aed05276a5b6c4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NP09.json", "taxon_id": "196627", "uniprot_accession": "Q8NP09", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium leprae (strain TN)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2631-pf10939.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2631-pf10939.yaml" } ], "pfam_ids": [ "PF10939" ], "protein_name": "Uncharacterized protein ML1584", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASTEGEHNAGVDPAEVPSVAWGWSRINHHTWHIVGLFAIGLLLAMLRGNHIGHVENWYLIGFAALVFFVLIRDLLGRRRGWIR", "sequence_length": 84, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0e5d75049ed2b29beee953697b615d6bf15e49ef6a54f94dbe6eef4fb49e916f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CBU2.json", "taxon_id": "272631", "uniprot_accession": "Q9CBU2", "uniprot_release": "2026_03" } ], "pfam_id": "PF10939", "short_name": "DUF2631", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10940", "short_name": "SpeFL", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2620-pf10941.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10941", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2620-pf10941.yaml" } ], "pfam_ids": [ "PF10941" ], "protein_name": "Uncharacterized protein YhfU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKIGVAGLQREQIKKTIEATAPGCFEVFIHNDMEAAMKVKSGQLDYYIGACNTGAGAALSIAIAVIGYNKSCTIAKPGIKAKDEHIAKMIAEGKVAFGLSVEHVEHAIPMLINHLK", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d46363d5f8fd6942f38a0fe8c6bb0a3f12803a53f2e9630cc5e7c7fbf964187c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P64631.json", "taxon_id": "83333", "uniprot_accession": "P64631", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2620-pf10941.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10941", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2620-pf10941.yaml" } ], "pfam_ids": [ "PF10941" ], "protein_name": "Uncharacterized protein YhfU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKIGVAGLQREQIKKTIEATAPGCFEVFIHNDMEAAMKVKSGQLDYYIGACNTGAGAALSIAIAVIGYNKSCTIAKPGIKAKDEHIAKMIAEGKVAFGLSVEHVEHAIPMLINHLK", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d46363d5f8fd6942f38a0fe8c6bb0a3f12803a53f2e9630cc5e7c7fbf964187c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P64632.json", "taxon_id": "199310", "uniprot_accession": "P64632", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2620-pf10941.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10941", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2620-pf10941.yaml" } ], "pfam_ids": [ "PF10941" ], "protein_name": "Uncharacterized protein YhfU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKIGVAGLQREQIKKTIEATAPGCFEVFIHNDMEAAMKVKSGQLDYYIGACNTGAGAALSIAIAVIGYNKSCTIAKPGIKAKDEHIAKMIAEGKVAFGLSVEHVEHAIPMLINHLK", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d46363d5f8fd6942f38a0fe8c6bb0a3f12803a53f2e9630cc5e7c7fbf964187c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P64633.json", "taxon_id": "623", "uniprot_accession": "P64633", "uniprot_release": "2026_03" } ], "pfam_id": "PF10941", "short_name": "DUF2620", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2619-pf10942.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10942", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2619-pf10942.yaml" } ], "pfam_ids": [ "PF10942" ], "protein_name": "Uncharacterized protein YqhV", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFLLGNINSTVLTMAGLRVLSSMIELTAAIVMLVTNDVRKAVVVNSILAIVGPLIFIITMTVGIYQIAGQLSYAKLILIFTGVVLILAGVHK", "sequence_length": 93, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dd7c8a40e2a25c1d19a0962b5eecb8ac8930af7aa0d35e123d50ecec9c8dc687", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P49779.json", "taxon_id": "224308", "uniprot_accession": "P49779", "uniprot_release": "2026_03" } ], "pfam_id": "PF10942", "short_name": "DUF2619", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Breda virus 1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2632-pf10943.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10943", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2632-pf10943.yaml" } ], "pfam_ids": [ "PF10943" ], "protein_name": "Membrane protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFETNYWPFPDQAPNPFNAQVEQLSATENVYIFLTTLFGILQLVYVIFKLLCTMFPALHWSPIWRGLENFWLFLSLASLAIAYWWLPSMTFTGYWALTIIATILGLIMLIMMSVKFVSFVKLFYRTGSFAIAIRGPIVLVALDVTIKLHCTPFAILVKEVGNIFYLSEYCNKPLTAAQVAALRICVGGQWFAYTRSTTTSAAKVAAANSTAKYHLFVLQGVAEYTQLSSVKFE", "sequence_length": 233, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b947f8307c3ded304223b4aff588d5521fa02c91b0ae9883f87308b6d1d64be2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O90305.json", "taxon_id": "360393", "uniprot_accession": "O90305", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Berne virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2632-pf10943.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10943", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2632-pf10943.yaml" } ], "pfam_ids": [ "PF10943" ], "protein_name": "Membrane protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFETNYWPFPDQAPNPFTAQIEQLTATENVYIFLTTLFGILQLVYVMFKLLCTMFPSLHFSPIWRGLENFWLFLSLASLAIAYWWLPSMTFTGYWALTIIATILVFILLIMMFVKFVNFVKLFYRTGSFAIAIRGPIVLVALDVTIKLHCTPFAILVKEIGNIFYLSEYCNKPLTAAQIAALRICVNGQWFAYTRSSTTSAARVAAANSTAKYHLFVLQGVAEYTQLSSVKFE", "sequence_length": 233, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "708d331af47c6c857af9d72128d330b9e4f0a2ecf290d468316d432f821d2249", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P27904.json", "taxon_id": "11156", "uniprot_accession": "P27904", "uniprot_release": "2026_03" } ], "pfam_id": "PF10943", "short_name": "DUF2632", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2630-pf10944.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10944", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2630-pf10944.yaml" } ], "pfam_ids": [ "PF10944" ], "protein_name": "Uncharacterized protein Mb0922c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKGRKPTDSETLAHIRDLVAEEKALRAQLRHGGISESEEQQQLRRIEIELDQCWDLLRQRRALRQTGGDPREAVVRPADQVEGYTG", "sequence_length": 87, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eb07b7f67ce03fe54061f145292c9e4e25e05bceeef4a6e70596fcd5d580df9e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64754.json", "taxon_id": "233413", "uniprot_accession": "P64754", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2630-pf10944.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10944", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2630-pf10944.yaml" } ], "pfam_ids": [ "PF10944" ], "protein_name": "Uncharacterized protein MT0921.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKGRKPTDSETLAHIRDLVAEEKALRAQLRHGGISESEEQQQLRRIEIELDQCWDLLRQRRALRQTGGDPREAVVRPADQVEGYTG", "sequence_length": 87, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eb07b7f67ce03fe54061f145292c9e4e25e05bceeef4a6e70596fcd5d580df9e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKP4.json", "taxon_id": "83331", "uniprot_accession": "P9WKP4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2630-pf10944.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10944", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2630-pf10944.yaml" } ], "pfam_ids": [ "PF10944" ], "protein_name": "Uncharacterized protein Rv0898c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKGRKPTDSETLAHIRDLVAEEKALRAQLRHGGISESEEQQQLRRIEIELDQCWDLLRQRRALRQTGGDPREAVVRPADQVEGYTG", "sequence_length": 87, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eb07b7f67ce03fe54061f145292c9e4e25e05bceeef4a6e70596fcd5d580df9e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKP5.json", "taxon_id": "83332", "uniprot_accession": "P9WKP5", "uniprot_release": "2026_03" } ], "pfam_id": "PF10944", "short_name": "DUF2630", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/bacterial-cellulose-biosynthetic-process-go0090540.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090540", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/bacterial-cellulose-biosynthetic-process-go0090540.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/cellulose-biosynthesis-protein-bcsr-nf040717.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF040717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/cellulose-biosynthesis-protein-bcsr-nf040717.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cbp-bcsr-pf10945.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10945", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cbp-bcsr-pf10945.yaml" } ], "pfam_ids": [ "PF10945" ], "protein_name": "Protein YhjR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQQK", "sequence_length": 62, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9a6e39cba993ae89363029bbdaf250d61bf23ff3e0580f55398163af75103ca1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADJ3.json", "taxon_id": "83333", "uniprot_accession": "P0ADJ3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cbp-bcsr-pf10945.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10945", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cbp-bcsr-pf10945.yaml" } ], "pfam_ids": [ "PF10945" ], "protein_name": "Protein YhjR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQQK", "sequence_length": 62, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9a6e39cba993ae89363029bbdaf250d61bf23ff3e0580f55398163af75103ca1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADJ4.json", "taxon_id": "623", "uniprot_accession": "P0ADJ4", "uniprot_release": "2026_03" } ], "pfam_id": "PF10945", "short_name": "CBP_BcsR", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008494.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008494", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008494.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2625-pf10946.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10946", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2625-pf10946.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P37003", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10946" ], "protein_name": "Putative uncharacterized protein YbfG", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "135d382fd4c2579398be77e670d5dce2872ae4c715466dd2709862f1433ec19e", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MREMNQLVNTEDSAWPIIQNWLKDATNHTELLPVNKDLAETALYQLQVTTKSPMGALVYGSGGLLIDNGXLRIAGSGHPRLPRDPVSWTQRPEFAGVRALPIADDVAGVIFALNGGDLGEDTGCVYYFAPDTLNWESLEVGYSEFLQWALSGDLDTFYENVRWQQWREDVIKLSATEAFTFYPFLWVQSEEARTRKVISLTELWEMQYQMKETFTQ", "sequence_length": 216, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "135d382fd4c2579398be77e670d5dce2872ae4c715466dd2709862f1433ec19e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P37003.json", "taxon_id": "83333", "uniprot_accession": "P37003", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2625-pf10946.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10946", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2625-pf10946.yaml" } ], "pfam_ids": [ "PF10946" ], "protein_name": "Uncharacterized protein HI_0374", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQTLEQLTSPEHSAWITLSQWIDNARNHCEVIKKDQSSAERELFTMQMPTSSPMGAVIYETGGILIHYGWLRILGSGSFKLPRGLMDWNFSKSFSESGEKPKYLLVADDVIGGYFALNGGSLGNNIGKIYYYSSKDLTWHNLNFTYTEFLAWVLNGDVEAFYQGLFWKNWQDDVKQLDGNQVFVFTPDLNQDRKIAIDERQKQEVNIETHYQANFAEKNKFDLAYSVA", "sequence_length": 228, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "414fa07716f7dee0011337f413e69c277791a443fd6ecebf2dffa5c7fc93fbd5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44670.json", "taxon_id": "71421", "uniprot_accession": "P44670", "uniprot_release": "2026_03" } ], "pfam_id": "PF10946", "short_name": "DUF2625", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2628-pf10947.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10947", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2628-pf10947.yaml" } ], "pfam_ids": [ "PF10947" ], "protein_name": "Uncharacterized protein YigF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKDYINDGSLSEKWKYRFSFYDQHGFPGFWKVSPEYKQAFKALKPRQRLTIQINFIAFFFSWIYLFVLGLWKKAIIVILLGIVAIFIGALIGVNILGLVVAAYVGVNTNKWFYEKEVKGINTWSL", "sequence_length": 126, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "266561416a04b473ab4aeb3aefda96cb104d2690c91d5b73f7568899ddde13dc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A1T8.json", "taxon_id": "99287", "uniprot_accession": "P0A1T8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhi", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2628-pf10947.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10947", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2628-pf10947.yaml" } ], "pfam_ids": [ "PF10947" ], "protein_name": "Uncharacterized protein YigF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKDYINDGSLSEKWKYRFSFYDQHGFPGFWKVSPEYKQAFKALKPRQRLTIQINFIAFFFSWIYLFVLGLWKKAIIVILLGIVAIFIGALIGVNILGLVVAAYVGVNTNKWFYEKEVKGINTWSL", "sequence_length": 126, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "266561416a04b473ab4aeb3aefda96cb104d2690c91d5b73f7568899ddde13dc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A1T9.json", "taxon_id": "90370", "uniprot_accession": "P0A1T9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2628-ipr024399.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024399", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2628-ipr024399.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2628-pf10947.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10947", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2628-pf10947.yaml" } ], "pfam_ids": [ "PF10947" ], "protein_name": "Uncharacterized protein YigF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKEYMNDGSLSEKWKYRFNFYDQHGFPGFWGATPEYKAAFKALKVRQRLTIQMNFIAFFCSWIYLFVLGLWKKAIIVLLLGILSLFVGALIGVNILGIAVAAYVAVNTNKWFYEKEVKGLNTWSL", "sequence_length": 126, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bd707a6ed02423ad7d7e1bcb2f042f9dbb93b7a57309fbda413e286d7c69bce1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P27842.json", "taxon_id": "83333", "uniprot_accession": "P27842", "uniprot_release": "2026_03" } ], "pfam_id": "PF10947", "short_name": "DUF2628", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2635-pf10948.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10948", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2635-pf10948.yaml" } ], "pfam_ids": [ "PF10948" ], "protein_name": "Mu-like prophage FluMu protein gp38", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPTFKIKPKTGLLIRDPETFELLSESGEDKPKISYWLNHLKNGDVELVTETTTKAKNSNKEQA", "sequence_length": 63, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "04a7e5628529ffe060b7267ca416259cc57476f328356670a2531ff8ce4bf518", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44232.json", "taxon_id": "71421", "uniprot_accession": "P44232", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage Mu", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2635-pf10948.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10948", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2635-pf10948.yaml" } ], "pfam_ids": [ "PF10948" ], "protein_name": "Putative sheath terminator protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKIKPAAGKAIRDPLTMKLLASEGEEKPRNSFWIRRLAAGDVVEVGSTENTADDTDAAPKKRSKSK", "sequence_length": 67, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f8a632206fc16e3ad30de861cdcbff3ea11b12363e7a3b1df8854313f6ae4b26", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P79677.json", "taxon_id": "2681603", "uniprot_accession": "P79677", "uniprot_release": "2026_03" } ], "pfam_id": "PF10948", "short_name": "DUF2635", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2777-pf10949.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10949", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2777-pf10949.yaml" } ], "pfam_ids": [ "PF10949" ], "protein_name": "Uncharacterized protein YisN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKKETAWMKRKQLLYTEERKWEYGTILIEDGICLIENGEGDILLADSLQHSPIWIHHKGKWEQAGFQDKLVLACGAENISLSGGERIRYEKSVKRPLMALLDSLDDETFLAFLQHLHSFGLSVFDCVFSYNKGVFSNTSAGQGVSFYHFSNDTAQCAMQHHYNYSSEGTGDRFEWTASNGKRSIMYTAVQRGRK", "sequence_length": 195, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "74cfcf441da8d7cca14dda32a2bfb5cd946bbc05817b4193f4d28b3c4d0be4bd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O06727.json", "taxon_id": "224308", "uniprot_accession": "O06727", "uniprot_release": "2026_03" } ], "pfam_id": "PF10949", "short_name": "DUF2777", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10950", "short_name": "Organ_specific", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2776-pf10951.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2776-pf10951.yaml" } ], "pfam_ids": [ "PF10951" ], "protein_name": "Inner membrane protein YhiM", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIYIGWLFKLIPLIMGLICIALGGFVLESSGQSEYFVAGHVLISLAAICLALFTTAFIIISQLTRGVNTFYNTLFPIIGYAGSIITMIWGWALLAGNDVMADEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPVQAYSSLIGNCLIAVPVLLTLLGFIWSITLLRSADITPHYVAGHVLLGLTAICACLIGLVATIVHQTRNTFSTKEHWLWCYWVIFLGSITVLQGIYVLVSSDASARLAPGIILICLGMICYSIFSKVWLLALVWRRTCSLANRIPMIPVFTCLFCLFLASFLAEMAQTDMGYFIPSRVLVGLGAVCFTLFSIVSILEAGSAKK", "sequence_length": 350, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87704ffb1d9c8baa12bf29fd723a60c7c372ad1946640cc4baa9e24f6c059977", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P37630.json", "taxon_id": "83333", "uniprot_accession": "P37630", "uniprot_release": "2026_03" } ], "pfam_id": "PF10951", "short_name": "DUF2776", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf2753-pf10952.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10952", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf2753-pf10952.yaml" } ], "pfam_ids": [ "PF10952" ], "protein_name": "Uncharacterized protein VP2110", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISEWEKHTLLADTALQLDDPVRSILHYQQALSLSEDISECVEIEADERLLISVISCHNLAQFWRWAGDTEYELKYLQLASEKVLTLIPQCPNQNCASFIDSIGCCTKALIDFMKRHPNPAIAKQVEKIDTATNCEVIAKFRLN", "sequence_length": 144, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "232891a19eaf74fe6fc4b2db2ece7930057fdd2ac3478c541ce1040946a7e218", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P46234.json", "taxon_id": "223926", "uniprot_accession": "P46234", "uniprot_release": "2026_03" } ], "pfam_id": "PF10952", "short_name": "DUF2753", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2754-pf10953.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10953", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2754-pf10953.yaml" } ], "pfam_ids": [ "PF10953" ], "protein_name": "Uncharacterized protein YaiZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLPVKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQTYAVGLVTWVISFWLAGLIIRRRDEETENAQ", "sequence_length": 70, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "59758abad08339410d15178e48c74534387e7b40985a612375ce1a16e46f4835", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAQ0.json", "taxon_id": "83333", "uniprot_accession": "P0AAQ0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2754-pf10953.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10953", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2754-pf10953.yaml" } ], "pfam_ids": [ "PF10953" ], "protein_name": "Uncharacterized protein YaiZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLPVKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQTYAVGLVTWVISFWLAGLIIRRRDEETENAQ", "sequence_length": 70, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "59758abad08339410d15178e48c74534387e7b40985a612375ce1a16e46f4835", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAQ1.json", "taxon_id": "199310", "uniprot_accession": "P0AAQ1", "uniprot_release": "2026_03" } ], "pfam_id": "PF10953", "short_name": "DUF2754", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2755-pf10954.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10954", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2755-pf10954.yaml" } ], "pfam_ids": [ "PF10954" ], "protein_name": "Inner membrane protein YaiY", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADFTLSKSLFSGKYRNASSTPGNIAYALFVLFCFWAGAQLLNLLVHAPGVYERLMQVQETGRPRVEIGLGVGTIFGLIPFLVGCLIFAVVALWLHWRHRRQ", "sequence_length": 102, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c3e6248168965256d67028f183f31d7f18899139484d52d4fcef3f52029d60b3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAP7.json", "taxon_id": "83333", "uniprot_accession": "P0AAP7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2755-pf10954.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10954", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2755-pf10954.yaml" } ], "pfam_ids": [ "PF10954" ], "protein_name": "Inner membrane protein YaiY", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADFTLSKSLFSGKYRNASSTPGNIAYALFVLFCFWAGAQLLNLLVHAPGVYERLMQVQETGRPRVEIGLGVGTIFGLIPFLVGCLIFAVVALWLHWRHRRQ", "sequence_length": 102, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c3e6248168965256d67028f183f31d7f18899139484d52d4fcef3f52029d60b3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAP8.json", "taxon_id": "199310", "uniprot_accession": "P0AAP8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2755-pf10954.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10954", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2755-pf10954.yaml" } ], "pfam_ids": [ "PF10954" ], "protein_name": "Inner membrane protein YaiY", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADFTLSKSLFSGKYRNASSTPGNIAYALFVLFCFWAGAQLLNLLVHAPGVYERLMQVQETGRPRVEIGLGVGTIFGLIPFLVGCLIFAVVALWLHWRHRRQ", "sequence_length": 102, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c3e6248168965256d67028f183f31d7f18899139484d52d4fcef3f52029d60b3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAP9.json", "taxon_id": "83334", "uniprot_accession": "P0AAP9", "uniprot_release": "2026_03" } ], "pfam_id": "PF10954", "short_name": "DUF2755", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fin-pf10955.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10955", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fin-pf10955.yaml" } ], "pfam_ids": [ "PF10955" ], "protein_name": "Anti-sigma-F factor Fin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ", "sequence_length": 76, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "68c13de2bb577b854cdd3287def6f7c0a864b3e5c21759cb538b8e114d59c3d8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37553.json", "taxon_id": "224308", "uniprot_accession": "P37553", "uniprot_release": "2026_03" } ], "pfam_id": "PF10955", "short_name": "Fin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/duf2756-family-protein-nf007675.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007675", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/duf2756-family-protein-nf007675.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2756-pf10956.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10956", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2756-pf10956.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0ADX7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10956" ], "protein_name": "Uncharacterized protein YhhA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "03710c306e37cde11f60565aac11ee495daa369372a1cd3096f2794355bb67c2", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", 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"https://rest.uniprot.org/uniprotkb/O84311.json", "taxon_id": "272561", "uniprot_accession": "O84311", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia muridarum (strain MoPn / Nigg)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2764-pf10962.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10962", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2764-pf10962.yaml" } ], "pfam_ids": [ "PF10962" ], "protein_name": "Uncharacterized protein TC_0583", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNQYYFLSSFLSPQQPESPPLYLFQEINDLLSLNFTEQDWKSYVVLLRFFDLENFAFFWSGKPVPFSFGTVTNNNVETLLRLQMWSDEWEFEDFFKDFLLRYKTSQERLANFSELVRSFLDHYQSYPSEFLRTYFRFKQDLRIILAGFRARVMQKDVSFVLRDEDSSNPVVLHVLMQKDSPNYELPDEFFELKDVLGDYGRLPHMLNQTLSLYEFHKVEEMSRDKYFNADAILSRVTTYLMAIRNSYVSVQKGKELINLMEKGIKW", "sequence_length": 266, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "787356b67ffe3bbcdb49d4af9d92341b59501cf4e13fece68f25fb1ab5c1e221", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9PK84.json", "taxon_id": "243161", "uniprot_accession": "Q9PK84", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2764-pf10962.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10962", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2764-pf10962.yaml" } ], "pfam_ids": [ "PF10962" ], "protein_name": "Uncharacterized protein CPn_0087/CP_0687/CPj0087/CpB0087", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTQYYFLSSFLPTQLPESVPLFSISDLDDLLYLNLSENDLCNYGLLKRFFDFENFAFFWAGKPIPFSFGEVTQENVERMLSSQQWSDDNDFEDFFKDFLMNHKSSQDRLNHFSDLFREFLSYHQTNSSKFLRDYFRFQQQLRVVLAGFRARVLNMDVSYVLRDEDSSDPVVLEVLMQKDSPNYELPEEFSDLQGVLDDYGLLPHTLNRALALYQFHKLEGFCSDSYFDGNVILARCATYMFAIRNSLASVEKGREIINHIEKAIKW", "sequence_length": 266, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5a7015533b57a381bb6d03d1ec6815d94c24ecdcd4c45bb8694e8090bfcb68ff", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z994.json", "taxon_id": "83558", "uniprot_accession": "Q9Z994", "uniprot_release": "2026_03" } ], "pfam_id": "PF10962", "short_name": "DUF2764", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10963", "short_name": "Phage_TAC_10", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2766-pf10964.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10964", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2766-pf10964.yaml" } ], "pfam_ids": [ "PF10964" ], "protein_name": "Uncharacterized protein YecJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQPLNADQELVSDVVACQLVIKQILDVLDVIAPVEVREKMSSQLKNIDFTNHPAAADPVTMRAIQKAIALIELKFTPQGESH", "sequence_length": 83, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d1f6c7c0084978624c358182bdb81cdc663c2aff6591d3e49f37bc0f0ed465fc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AD10.json", "taxon_id": "83333", "uniprot_accession": "P0AD10", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", 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true, "sequence": "MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK", "sequence_length": 69, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "499bb20803ef90fce113c7bc9e7d0e8e9a37b4ed02ac8b87e62aa49b4fa439ae", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0ACX7.json", "taxon_id": "83334", "uniprot_accession": "P0ACX7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10965", "short_name": "DUF2767", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2768-pf10966.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10966", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2768-pf10966.yaml" } ], "pfam_ids": [ "PF10966" ], "protein_name": "Uncharacterized protein YphE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLALMKMWFALGSMGLMFLAVASIYLSRFKCQNRFLKIAISSFAYMCMLISGIIVFVVVFSGPVNE", "sequence_length": 67, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "567b4db0df7c2ccf0d780a20fec7a2ac085d513d2bd14295994c4795d21e4e45", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P50744.json", "taxon_id": "224308", "uniprot_accession": "P50744", "uniprot_release": "2026_03" } ], "pfam_id": "PF10966", "short_name": "DUF2768", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { 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"sequence_sha256": "45d5a19fad3d4563bc06895eb0062066055aa32ba24ab66c0f3c8773aed9895b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O28049.json", "taxon_id": "224325", "uniprot_accession": "O28049", "uniprot_release": "2026_03" } ], "pfam_id": "PF10967", "short_name": "DUF2769", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2770-pf10968.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10968", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2770-pf10968.yaml" } ], "pfam_ids": [ "PF10968" ], "protein_name": "Uncharacterized protein YceO", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRPFLQEYLMRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF", "sequence_length": 46, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6f73ac1aab5ce1f55048c8ec1f14aa8444332055f65065de6689c7b49a1ce990", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64442.json", "taxon_id": "83333", "uniprot_accession": "P64442", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2770-pf10968.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10968", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2770-pf10968.yaml" } ], "pfam_ids": [ "PF10968" ], "protein_name": "Uncharacterized protein YceO", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRPFLQEYLMRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF", "sequence_length": 46, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6f73ac1aab5ce1f55048c8ec1f14aa8444332055f65065de6689c7b49a1ce990", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64443.json", "taxon_id": "83334", "uniprot_accession": "P64443", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2770-pf10968.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10968", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2770-pf10968.yaml" } ], "pfam_ids": [ "PF10968" ], "protein_name": "Uncharacterized protein YceO", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRPFLQEYLMRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF", "sequence_length": 46, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6f73ac1aab5ce1f55048c8ec1f14aa8444332055f65065de6689c7b49a1ce990", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64444.json", "taxon_id": "623", "uniprot_accession": "P64444", "uniprot_release": "2026_03" } ], "pfam_id": "PF10968", "short_name": "DUF2770", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2771-pf10969.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2771-pf10969.yaml" } ], "pfam_ids": [ "PF10969" ], "protein_name": "Uncharacterized protein Mb0899c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRGVATLPVILVILLSVAAGAGAWLLVRGHGPQQPEISAYSHGHLTRVGPYLYCNVVDLDDCQTPQAQGELPVSERYPVQLSVPEVISRAPWRLLQVYQDPANTTSTLFRPDTRLAVTIPTVDPQRGRLTGIVVQLLTLVVDHSGELRDVPHAEWSVRLIF", "sequence_length": 162, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "367b10db267bd2b0fdc57e0653713622540224459148d547029fb98039361e65", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64732.json", "taxon_id": "233413", "uniprot_accession": "P64732", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2771-pf10969.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2771-pf10969.yaml" } ], "pfam_ids": [ "PF10969" ], "protein_name": "Uncharacterized protein MT0898", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRGVATLPVILVILLSVAAGAGAWLLVRGHGPQQPEISAYSHGHLTRVGPYLYCNVVDLDDCQTPQAQGELPVSERYPVQLSVPEVISRAPWRLLQVYQDPANTTSTLFRPDTRLAVTIPTVDPQRGRLTGIVVQLLTLVVDHSGELRDVPHAEWSVRLIF", "sequence_length": 162, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "367b10db267bd2b0fdc57e0653713622540224459148d547029fb98039361e65", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKR6.json", "taxon_id": "83331", "uniprot_accession": "P9WKR6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2771-pf10969.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2771-pf10969.yaml" } ], "pfam_ids": [ "PF10969" ], "protein_name": "Uncharacterized protein Rv0875c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRGVATLPVILVILLSVAAGAGAWLLVRGHGPQQPEISAYSHGHLTRVGPYLYCNVVDLDDCQTPQAQGELPVSERYPVQLSVPEVISRAPWRLLQVYQDPANTTSTLFRPDTRLAVTIPTVDPQRGRLTGIVVQLLTLVVDHSGELRDVPHAEWSVRLIF", "sequence_length": 162, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "367b10db267bd2b0fdc57e0653713622540224459148d547029fb98039361e65", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKR7.json", "taxon_id": "83332", "uniprot_accession": "P9WKR7", "uniprot_release": "2026_03" } ], "pfam_id": "PF10969", "short_name": "DUF2771", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gerpe-pf10970.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10970", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gerpe-pf10970.yaml" } ], "pfam_ids": [ "PF10970" ], "protein_name": "Probable spore germination protein GerPE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKRISRIRLVKFNSLGIASVFQVGDTNEIDMSVKVFAVQRSLSTFYHNEGSFNKKEYQIFQQQAVKPLPETGVQSAFCHEVPAIYVRSIKIQGVSASSVLHAGSASLIRGDARLKHIRQIQSPRSQSPAKNI", "sequence_length": 133, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f33e10f1b675f844d2e5ce961ed26e7dca031f80a3a62354ca02e54191d9b8bf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O06717.json", "taxon_id": "224308", "uniprot_accession": "O06717", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus cereus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gerpe-pf10970.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10970", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gerpe-pf10970.yaml" } ], "pfam_ids": [ "PF10970" ], "protein_name": "Probable spore germination protein GerPE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLHHVSIVQNVSIISLGIAAVFQVGDANQMELKSRAIAVHREIPFYIRGEGRFDAFEIFTDEHITIPKRTTDVKLNIVNECPFIEVNNVELRTLLNSGCFQIGNVDYGFNNSRIIQIRQYITDEPSAQ", "sequence_length": 128, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "441e96b2c0e8bb30e16bee63acd7c544ddf9080cbe6ba467f38f9328702cabe9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O68687.json", "taxon_id": "1396", "uniprot_accession": "O68687", "uniprot_release": "2026_03" } ], "pfam_id": "PF10970", "short_name": "GerPE", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/response-to-methylglyoxal-go0051595.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051595", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/response-to-methylglyoxal-go0051595.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2773-ipr024497.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024497", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2773-ipr024497.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2773-pf10971.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10971", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2773-pf10971.yaml" } ], "pfam_ids": [ "PF10971" ], "protein_name": "Uncharacterized protein YdbD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKARNCGWIRLLPLFMLSLPVQAELRCVANAVDIESFFSAATAEDKQQVEQAINSSVNLVPFGLSASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVADSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMVRASDKHDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFRPKPSPELVQELQMLDEGKVAAFEGRDIATFDLAVMRTLPRLKGISANLRKQLINSNDEQTIESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAMQLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAGYLYQKFENDDDLIRVLFLALPDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSMKQKIWQRALSHRKNNPKADSDAYETSADMILSELISHGEVDDQMLLNATALIRSDDWDFLESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQLDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVDVLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY", "sequence_length": 768, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2be8c6160206cb482a07f8cbe6f702ad410091c416e3b0898cb6ee6759466dfa", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P25907.json", "taxon_id": "83333", "uniprot_accession": "P25907", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2773-ipr024497.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024497", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2773-ipr024497.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2773-pf10971.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10971", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2773-pf10971.yaml" } ], "pfam_ids": [ "PF10971" ], "protein_name": "Putative uncharacterized protein YkiA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQSRNDHLRQTALRNAHTPALLLTTLTEPQDRSLAINNPQLAADVKTAWLKEDPSLLLFVEQPDLSLLRDLVKTGATRKIRSEARHRLEEKQ", "sequence_length": 93, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "089ba71ca3ca14888d3a5ea3c026b1a7f7efef397f7316d43a6d020424ef6dfd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75704.json", "taxon_id": "83333", "uniprot_accession": "P75704", "uniprot_release": "2026_03" } ], "pfam_id": "PF10971", "short_name": "DUF2773", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10972", "short_name": "CsiV", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/lipoprotein-nf008518.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008518", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/lipoprotein-nf008518.yaml" }, { "cited_uniprot_accession": "", 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], "pfam_ids": [ "PF10973" ], "protein_name": "Uncharacterized protein YfiL", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0aadce7004d7dfbd3a2bbabe62dcc8055e86b507e7b04ffb79a596aec47f20e4", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MMKKFIAPLLALLVSGCQIDPYTHAPTLTSTDWYDVGMEDAISGSAIKDDDAFSDSQADRGLYLKGYAEGQKKTCQTDFTYARGLSGKSFPASCNNVENASQLHEVWQKGADENASTIRLN", "sequence_length": 121, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0aadce7004d7dfbd3a2bbabe62dcc8055e86b507e7b04ffb79a596aec47f20e4", 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"fb7c4b002f69430ea186782f71cf10f4b2d30b764154afe62bb62009a6fdbf8b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q05292.json", "taxon_id": "31757", "uniprot_accession": "Q05292", "uniprot_release": "2026_03" } ], "pfam_id": "PF10979", "short_name": "DUF2786", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10980", "short_name": "DUF2787", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10981", "short_name": "DUF2788", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10982", "short_name": "DUF2789", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], 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"PF10990" ], "protein_name": "Uncharacterized membrane protein YjgA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRNRWIYAVFTILIIGLGLGSRAFSSVLPDTLNTYLGDSLWAAMIFTGCGFLFRKLKTMITGIISLSFCFVIEFSQLYHAEWIDQIRDTSLGGLVLGYGFLWSDIEAYTIGIAACAAIELLVLGIKKRRCM", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f4ffca89084463703845b0d587822ae309e90e4a7db8ed3ff12f9cfa1a703f23", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O35027.json", "taxon_id": "224308", "uniprot_accession": "O35027", "uniprot_release": "2026_03" } ], "pfam_id": "PF10990", "short_name": "DUF2809", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acyrthosiphon pisum secondary endosymbiont phage 1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/enc34-ssdna-bd-pf10991.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10991", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/enc34-ssdna-bd-pf10991.yaml" } ], "pfam_ids": [ "PF10991" ], "protein_name": "Putative protein p50", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIKLNNVRLAFPELFEPTQVSGQGAFKYRANFLIPKSRTDLIEEIKAGIKHVIGEKWGNKDIEKIYNSICNNPNRFCLRDGDSKEYDGYAGNLYLSASNKSRPLVIDRNTSPLTAQDGRPYSGCYVNATVEFYGYDNNGKGVSASLRGVQFFRDGDAFTGGGVASVEEFDDLSMAEEEELLAS", "sequence_length": 184, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4b1132262792d6fa7bca83ff1a7697d75f15a3353f627f052b94609a98eb429d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9T1P8.json", "taxon_id": "2682836", "uniprot_accession": "Q9T1P8", "uniprot_release": "2026_03" } ], "pfam_id": "PF10991", "short_name": "Enc34_ssDNA-bd", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10992", "short_name": "Epiplasmin", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10993", "short_name": "DUF2818", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10994", "short_name": "DUF2817", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain 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"NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P37657", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10995", "PF29871", "PF29872" ], "protein_name": "Cyclic di-GMP binding protein BcsE", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "2f72006994bc9c4bf770557f7d9da0cae6823b4618466977517606454b449dce", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRDIVDPVFSIGISSLWDELRHMPAGGVWWFNVDRHEDAISLANQTIASQAETAHVAVISMDSDPAKIFQLDDSQGPEKIKLFSMLNHEKGLYYLTRDLQCSIDPHNYLFILVCANNAWQNIPAERLRSWLDKMNKWSRLNHCSLLVINPGNNNDKQFSLLLEEYRSLFGLASLRFQGDQHLLDIAFWCNEKGVSARQQLSVQQQNGIWTLVQSEEAEIQPRSDEKRILSNVAVLEGAPPLSEHWQLFNNNEVLFNEARTAQAATVVFSLQQNAQIEPLARSIHTLRRQRGSAMKILVRENTASLRATDERLLLACGANMVIPWNAPLSRCLTMIESVQGQKFSRYVPEDITTLLSMTQPLKLRGFQKWDVFCNAVNNMMNNPLLPAHGKGVLVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSFCRINDLDTALNHIFPLPTGDIFSNRMVWFEDDQISAELVQMRLLAPEQWGMPLPLTQSSKPVINAEHDGRHWRRIPEPMRLLDDAVERSS", "sequence_length": 523, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2f72006994bc9c4bf770557f7d9da0cae6823b4618466977517606454b449dce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37657.json", "taxon_id": "83333", "uniprot_accession": "P37657", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { 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"data/traits/sequence/family/pfam/amj-pf10997.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10997", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/amj-pf10997.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P96581", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10997" ], "protein_name": "Lipid II flippase Amj", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "af7962ea1dc47fc974e84eff45a6990ad41d87bb0c855fa30a2472b71a748551", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MHVITTQVLFIFCFLLLIHSIETLAYATRLSGARVGFIASALSLFNVMVIVSRMSNMVQQPFTGHLIDDAGKNALAIVGEQFRFLIFGSTVGTILGIILLPSFVALFSRAIIHLAGGGGSVFQVFRKGFSKQGFKNALSYLRLPSISYVKGFHMRLIPKRLFVINMLITSIYTIGVLSALYAGLLAPERSTTAVMASGLINGIATMLLAIFVDPKVSVLADDVAKGKRSYIYLKWTSVTMVTSRVAGTLLAQLMFIPGAYYIAWLTKWF", "sequence_length": 269, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "af7962ea1dc47fc974e84eff45a6990ad41d87bb0c855fa30a2472b71a748551", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P96581.json", "taxon_id": "224308", "uniprot_accession": "P96581", "uniprot_release": "2026_03" } ], "pfam_id": "PF10997", "short_name": "Amj", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Ricinus communis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2838-pf10998.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10998", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2838-pf10998.yaml" } ], "pfam_ids": [ "PF10998" ], "protein_name": "Glycerophosphocholine acyltransferase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNNEDPINEFVSNGDSFEKVKQRLKDRSKKVAQTKEILSKQANQTKEILSKQAVKIAKQAEEHESFINKVTHLLGVLGFGGFCFLLGARPQDIPYVYCLFFFIFVPLRWIYYRFKKWHYFLLDFCYYANTIFLVDLLLYPKDEKLFMVCFSFAEGPLAWALIVWRCSLVFSSVDKIVSVLIHLLPGLVFFTIRWWNPATFEAMHPEGTSGRASWPYVEDKSFLFTWLFLVPLVAYFLWQLLYFLIVNVLRRQRLLRDPEVMTSYRELSKKAQKANNVWWRLSGLLGDQNRMLMYILLQALFTVATTALTVPIFLSYELHAVFQILKVSAAVWNGGSFLLDVMPRQVILKEKKKSELQPAHIQQYHSEPKQDQSPNSMEIRMKTIHSAEEQ", "sequence_length": 391, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "875f2fff53bd2f50646c92cd921d8405780f278c8202e88b234dd7705c677393", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B9RK42.json", "taxon_id": "3988", "uniprot_accession": "B9RK42", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/glycero-3-phosphocholine-acyltransferase-activity-go0106158.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0106158", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/glycero-3-phosphocholine-acyltransferase-activity-go0106158.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2838-pf10998.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10998", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2838-pf10998.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P48236", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10998" ], "protein_name": "Glycerophosphocholine acyltransferase 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3bc03652677d4bd07a45eec34a192089a1ee88c0a3a31ed0d9d7b6a77289564c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MYKLDNNDIDDETNNSVSLTSLLEFLDPIASKVVSKYYHGSHLSKAEQKLRNFEGFRRRKPHHEHDSHHPHHLNRSRSFLQLEDFKVRALQRIRNLDKPLDSIFFKNSSRLEKAFYPFTLFNIFFIGFLMGRFPEWFHVYYTILFFVLMPIRFYTYYKTKNHYFLADFCYFVNMLCLLFIWIFPYSYSLFQSCFAFTFGTLCFAVITWRNSLVIHSIDKTTSCFIHIIPPCVMYVIYHGLPLEYKIERFPGAIIQSELDIKKNILWTSLYYLVWQSLYHYFITLKKSSKIKSGERMTSFEYLTTHQFKNFWAVKLRSPWPMIIYTLSQYFYQLFTMLLCGIWIRYKLAAALFLTIVFLWASHNGATYYIDHYGKNFEKEVDRLRLEVENLQQKLQPDSDAVISDASVNDKDYLNVNRDEDFDDSSSVSSKSD", "sequence_length": 432, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3bc03652677d4bd07a45eec34a192089a1ee88c0a3a31ed0d9d7b6a77289564c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P48236.json", "taxon_id": "559292", "uniprot_accession": "P48236", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/glycero-3-phosphocholine-acyltransferase-activity-go0106158.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0106158", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/glycero-3-phosphocholine-acyltransferase-activity-go0106158.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2838-pf10998.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF10998", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2838-pf10998.yaml" } ], "pfam_ids": [ "PF10998" ], "protein_name": "Glycerophosphocholine acyltransferase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANNEDSNSNGLDSFDAVKQRFKDRSKKVVQTRELLSKQAVQTREILSKQAVKIAKQAEEHERFINKVTHLVGVLGFGGFCFLLGARPQDIPLVYCFFYVIFVPLRWIYYRFKKWHYYLLDFCYYANTIFLVDLLLYPKNEKLFMVCFSFAEGPLAWAIIVWRCSLVFSSPDKIVSVLIHLLPGLVFFTIRWWNPATFAAMHPVGTDRRVSWPYVEDKAYLFTWLFLVPLVVYTLWQVLYFLIVNVLRRQRLLRDPEVMTSYRELSKKAEKANNKLWQLSGLLGDQNRIWMYILFQAIFTVATMALTVPIFLSYRLHVIFQILKISAAVWNGGSFLLEVMPRQVIQKEKKKKAEMQPIEEQILHHEAVSHPTENEPKSTET", "sequence_length": 381, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "889bfe0c24c6a1ef3d95443b7b14fad4c9b45038dfee11dba44338671e04a5e2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FJB4.json", "taxon_id": "3702", "uniprot_accession": "Q9FJB4", "uniprot_release": "2026_03" } ], "pfam_id": "PF10998", "short_name": "DUF2838", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF10999", "short_name": "DUF2839", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11000", "short_name": "DUF2840", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/afub-07903-ydr124w-hel-pf11001.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/afub-07903-ydr124w-hel-pf11001.yaml" } ], "pfam_ids": [ "PF11001" ], "protein_name": "Subtelomeric hrmA-associated cluster protein AFUB_079030", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGLCVRSSINIPYFHYAMIYLDNMGRLKVMESPSIQEQNETVFTTEVRERFLEILGAKVGYQPPMVRSIYDPQQPLGCLSYRQTKRDRNSPAHSMYGVPPSVQFSAPVEESPSCGSVDMVGLEIGDTPNVLDYYERSLKHFRQVNCRQILKTFIKFIEPRKQAKHPYNGGKPPAGAPPGKKGDPEKTKPEWWPANVVHKEPDHLRKDRTCNPSENLQCQVTLLTDLERLSLLIHIIRRLGRFGITTDQLQEIAHDCKRRLSDPHKLQILDEVFRVRRIEERYERGEVDANKIVYVVNRESNQKEKDGDSNVDPDQKHEQEDDNAREALPILHSEKNSTSPMSNSAEHTGMAAPSRPMNMGGDRNQLFPLPEWPSFGETPQDDRIFFPTTSKYTEDYASQQMPRTPATTALVSTNETHAAFDYMTQESITSSSPEQTSHHRQAPLPMQHSASLDPWTPTFRHNFFNPMVYSTAPRHAMSQATMLSQFPRSTTSHGQEMPHMAHGLPNLPQDRPSSMDGMSMRGPSFRTGFLSHPCDPSQQAPHSSGCGHPDSWTQNRPHV", "sequence_length": 559, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "989231cb7b404017ea6319e866e3df7d4d8bcb561549c6a838449e80b0e76d03", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B0Y8Y9.json", "taxon_id": "451804", "uniprot_accession": "B0Y8Y9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/subtelomeric-hrma-associated-cluster-protein-afub-079030-ydr124w-like--ipr047092.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR047092", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/subtelomeric-hrma-associated-cluster-protein-afub-079030-ydr124w-like--ipr047092.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ydr124w-n-terminal-domain-ipr048462.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048462", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ydr124w-n-terminal-domain-ipr048462.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/afub-07903-ydr124w-hel-pf11001.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/afub-07903-ydr124w-hel-pf11001.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ydr124w-n-pf21652.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21652", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ydr124w-n-pf21652.yaml" } ], "pfam_ids": [ "PF11001", "PF21652" ], "protein_name": "Uncharacterized protein YDR124W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRIGMEELRRALALLNGQGYEFMVFIKEKDHLISESIPKNLFSESFISSSIEKNPPLTFDPLVNRKRITVYEENIQPAIMLPLDQPLLIQNYLYTAFKLLRQVPCKAIAKLWIKIIEPRKKTRFPYIKGNAGRPEWWPKDVEHKEPDHLQKADRLKLMCTIIMNVLPQSPFSLEILDELTGVTAAMTIFKKETVKKVIMKNVFEIAKCLCNKDFKQKTISLDDLNDLAQKQKKSYHSRRFDVNKMVKVEKDLLQQSSGSDSSPSMILPSKESDTEYFPREYPKDPVSEDYSNSISRLENLVEFDPLFLTKLDELTSSDDCKDFI", "sequence_length": 324, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a51c594282c28c373f57ef6f1b8fcbb4077acdee3054de746a9408225b89a200", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q04608.json", "taxon_id": "559292", "uniprot_accession": "Q04608", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/afub-07903-ydr124w-hel-pf11001.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/afub-07903-ydr124w-hel-pf11001.yaml" } ], "pfam_ids": [ "PF11001" ], "protein_name": "Subtelomeric hrmA-associated cluster protein AFUA_5G14920", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGLCVRSSINIPYFHYAMIYLDNMGRLKVMESPSIQEQNETVFTTEVRERFLEILGAKVGYQPPMVRSIYDPQQPLGCLSYRQTKRDRNSPAHSMYGVPPSVQFSAPVEESPSCGSVDMVGLEIGDTPNVLDYYERSLKHFRQVNCRQILKTFIKFIEPRKQAKHPYNGGKPPAGAPPGKKGDPEKTKPEWWPANVVHKEPDHLRKDRTCNPSENLQCQVTLLTDLERLSLLIHIIRRLGRFGITTDQLQEIAHDCKRRLSDPHKLQILDEVFRVRRIEERYERGEVDANKIVYVVNRESNQKEKDGDSNVDPDQKHEQEDDNAREALPILHSEKNSTSPMSNSAEHTGMAAPSRPMNMGGDRNQLFPLPEWPSFGETPQDDRIFFPTTSKYTEDYASQQMPRTPATTALVSTNETHAAFDYMTQESITSSSPEQTSHHRQAPLPMQHSASLDPWTPTFRHNFFNPMVYSTAPRHAMSQATMLSQFPRSTTSHGQEMPHMAHGLPNLPQDRPSSMDGMSMRGPSFRTGFLSHPCDPSQQAPHSSGCGHPDSWTQNRPHV", "sequence_length": 559, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "989231cb7b404017ea6319e866e3df7d4d8bcb561549c6a838449e80b0e76d03", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4WW99.json", "taxon_id": "330879", "uniprot_accession": "Q4WW99", "uniprot_release": "2026_03" } ], "pfam_id": "PF11001", "short_name": "AFUB_07903_YDR124W_hel", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11003", "short_name": "DUF2842", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methylacidiphilum infernorum (isolate V4)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kdo-hydroxy-pf11004.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11004", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kdo-hydroxy-pf11004.yaml" } ], "pfam_ids": [ "PF11004" ], "protein_name": "3-deoxy-D-manno-oct-2-ulosonic acid hydroxylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFPMDTKTNEQPIIQFDAESWEAEFTQEIQDKAIEGLESGSVLFFPKLNFPLLTEELKFLDPTWVSGAKNISYDPRSATLKGVEGKSEDLRLLSGLLKRYAEKTAAFLHLLFPFYGSSLKIARTSFRPVEISGRATSARKDDTRLHVDAFPSSPTGGERILRVFSNINPQGKPRSWRIGEPFQNYLNHLLPQLSPPAPGKRFLLYLFGITKGYRSLYDHYMLELHDKGKLDLEYQKNSPQVAFDFPAGSTWIVFTDQVLHAVDKGQFLLEQTFHLKVNALKHPEKSPLKLLETALNKKLVSSESF", "sequence_length": 305, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0683cb056ef838862cf117aa355108e12b2f7ef2692241dce232b7445f8cb730", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B3DUR4.json", "taxon_id": "481448", "uniprot_accession": "B3DUR4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Burkholderia ambifaria (strain ATCC BAA-244 / DSM 16087 / CCUG 44356 / LMG 19182 / AMMD)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kdo-hydroxy-pf11004.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11004", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kdo-hydroxy-pf11004.yaml" } ], "pfam_ids": [ "PF11004" ], "protein_name": "3-deoxy-D-manno-oct-2-ulosonic acid hydroxylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSESQIIEVPSADWSGHNLSAPREQLLAAVEEGKVLYFPHLRFAIEGGEEALLDPSLADPKRKNISLAPNGGVLAGVLGDSVTQSAVRALVARFQQQAGTLVDGLFPEYRGKLRVAPTSLRLMQVETRQTSWRKDDSRLHVDAFPSRPNYGERILRVFTNVNPAGQPRVWRVGEPFEDVAKRFLPKIRPQLPGSAWLLNLLHVTKSPRSAYDHLMLNLHDGMKADLDYQKTCPQQTMPFPPGSVWICFSDQTSHAVMSGQFMLEQTFFLPVDAMVRRECAPLGILERLTGRALV", "sequence_length": 294, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a2ef056ed17b4144d84632732600a59e589810d52bb2e3ea4b507b84c6121162", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0BHP0.json", "taxon_id": "339670", "uniprot_accession": "Q0BHP0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Yersinia pestis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kdo-hydroxy-pf11004.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11004", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kdo-hydroxy-pf11004.yaml" } ], "pfam_ids": [ "PF11004" ], "protein_name": "3-deoxy-D-manno-oct-2-ulosonic acid hydroxylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIFRSRSLMCIDKPESDPLILTLPNTRWDQNAEDNTGAIEALEQGKVLFLPHLTFELSEQEKQLLDPTLVDVKRKNISFKPLEGVLTGVTDASKIALTRQLLDRYYQSCLSLVQQLLPVYTHALHSPTNSLRLHPVAAWRDSTSWRKDDSRLHVDAFPSRPNYGERIIRIFTNINPHGEARSWRVGEDFTQLASRYLPQLDSYSSLSSWLQHKIGITKRPRSHYDHLMLQLHDKMKADLAYQKDGLQQAIEFPPGSSWICFSDQTPHAAMGGQFMLEQTLLLPVEGMKSSQRSPLKILEALTQKTLI", "sequence_length": 307, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2b95448d104a0969a40e3db6c52ec38546b69b2c69bbd569ff9edfbdc2769a75", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CL93.json", "taxon_id": "632", "uniprot_accession": "Q8CL93", "uniprot_release": "2026_03" } ], "pfam_id": "PF11004", "short_name": "Kdo_hydroxy", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11005", "short_name": "DUF2844", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11006", "short_name": "DUF2845", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2846-pf11008.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2846-pf11008.yaml" } ], "pfam_ids": [ "PF11008" ], "protein_name": "Uncharacterized protein HI_1456", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFLMWALRLVYVLVSNGYFVKQLFARASIIGVALLLSACATVPMASVEESNTAKQFRSPEKGNSGLYIYRDSFIGKALKKDLYIDDKFIGESAPDVFFYKTIKAGEHKISTESEFSNSDLNIKTESGKNYFIRQYTKFGVFVGGANLEQVSEEEGKKAISKLNMAVSH", "sequence_length": 168, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "903981864ef34d628d31232ad7348a4e3c45c530462f0c53f373b53ea774541c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44203.json", "taxon_id": "71421", "uniprot_accession": "P44203", "uniprot_release": "2026_03" } ], "pfam_id": "PF11008", "short_name": "DUF2846", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/translation-elongation-factor-binding-go0061770.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061770", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/translation-elongation-factor-binding-go0061770.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/bacillithiol-system-redox-active-protein-ytxj-tigr04019.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR04019", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/bacillithiol-system-redox-active-protein-ytxj-tigr04019.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/brxc-pf11009.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11009", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/brxc-pf11009.yaml" } ], "pfam_ids": [ "PF11009" ], "protein_name": "Monothiol bacilliredoxin BrxC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKQLIQSEEEFKRIAEQEGVFVFLKHSTTCPISQAAFHEFDAFANQHEDVPAYYLQVQEARPLSNFIAETYGVKHESPQIFIIQNGEVKWHTSHSQITEAAIEQHLS", "sequence_length": 108, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "21879052e742384db708fd25d38c748d8b0058c40480e3f007276405485e5b8d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P39914.json", "taxon_id": "224308", "uniprot_accession": "P39914", "uniprot_release": "2026_03" } ], "pfam_id": "PF11009", "short_name": "BrxC", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11010", "short_name": "DUF2848", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11011", "short_name": "DUF2849", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11012", "short_name": "DUF2850", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11013", "short_name": "DUF2851", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11014", "short_name": "DUF2852", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11015", "short_name": "DUF2853", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2854-pf11016.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11016", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2854-pf11016.yaml" } ], "pfam_ids": [ "PF11016" ], "protein_name": "Thylakoid membrane protein slr0575", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPKISLAAVGLTVGGILTITGFVAYALDYATLNLAGFFYGIPLVLGGLALKAAELKPIPFSQPTSEKIIALRNQLATPTQNQIRKDVTRYRYGQEAHLDESLERLGLSPTDEERPVLTSLLEQDWEGKYVLTLTFTSPFISLETWQEKQEKIAKFFGPDLEVTVAEPEEKVVTVNLISQLALP", "sequence_length": 184, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c129c0e81a60f18df2b5ba7909d8b136c12d10d34cff81af06444f8aa1c5869f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q55403.json", "taxon_id": "1111708", "uniprot_accession": "Q55403", "uniprot_release": "2026_03" } ], "pfam_id": "PF11016", "short_name": "DUF2854", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11017", "short_name": "DUF2855", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia bellii (strain RML369-C)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2608-pf11019.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11019", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2608-pf11019.yaml" } ], "pfam_ids": [ "PF11019" ], "protein_name": "Uncharacterized protein RBE_0637", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFKKYIFILLLLVTSIVKAENIEVNNLDKIKQDFEENYIKNYLPQDLLVVIDLDKILFKPLLSLGEQIDKDVYAKLAPTLQKISKNPKNIYIDQLILTSDKYKKELLDSNFPNFVSDIRNKNIPIIAVNGGFTGNFNNIPKFEIWIADYLKKNFNIDFSNSFPKNNYIIFNNLKSFSNTYPVFYKGILTSNNISGAELMINFFVQMNFMPKVLIMVSGSTELLSSMEAQLANYSSSVLFIGYYYNNQDSRDNNANYNVIINDLTNQMNNIKRNNPPLKTNNAKSKNPYDQSK", "sequence_length": 292, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6782e21c400e0fe3f1d7909a0218e6674158c7b3a80c26e90ae25e27d2b9725e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q1RIU6.json", "taxon_id": "336407", "uniprot_accession": "Q1RIU6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2608-pf11019.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11019", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2608-pf11019.yaml" } ], "pfam_ids": [ "PF11019" ], "protein_name": "Uncharacterized protein RF_0480", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFKRSLFILLLLAASLVKAEIIEVDSLNKIKQDFKENYNKNYVPQDLLVVTVLDEFLFKSLVPIGEQIDKDIYLTLTPLLRNINKNSKAIYIDQLILTNDSYKKELQESDFPNFVNEMSNSKIPIIAVNDGFTGNFNNIPKFEIWFADYLKKNFNIDFSNSFPNNNYIIFNNLDSFANTYPVFYKGILTSNNISKAEMMLNFLIQVGFMPKAFIIISNNIELLKSMEFQLNSYSSNILFIGYHYNNKNTPENKDAAYYTKIINDLISQINKIKRNNPPLKTNKIKDKNPYDKNQ", "sequence_length": 294, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3d2131080d44cf23aec4da9cf8e7b78db36c311500f7d493897610da03c1319c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4UJN3.json", "taxon_id": "315456", "uniprot_accession": "Q4UJN3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2608-pf11019.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11019", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2608-pf11019.yaml" } ], "pfam_ids": [ "PF11019" ], "protein_name": "Putative outer membrane protein CPn_1034/CP_0818/CPj1034/CpB1074", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTWLFFTFLFSCSSFYASCRYAEVRSIHEVAGDILYDEENFWLILDLDDTLLQGGEALSHSIWKSKAIQGLQKQGTPEQEAWEAVVPFWIEIQEMGTVQPIESAIFLLIEKIQKQGKTTFVYTERPKTAKDLTLKQLHMLNVSLEDTAPQPQAPLPKNLLYTSGILFSGDYHKGPGLDLFLEICTPLPAKIIYIDNQKENVLRIGDLCQKYGIAYFGITYKAQELHPPIYFDNIAQVQYNYSKKLLSNEAAALLLRHQMHE", "sequence_length": 262, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c473c96d57fc532e3061586b154111551db9fab737f52ae75c9b015aba34caf1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z6M5.json", "taxon_id": "83558", "uniprot_accession": "Q9Z6M5", "uniprot_release": "2026_03" } ], "pfam_id": "PF11019", "short_name": "DUF2608", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia conorii (strain ATCC VR-613 / Malish 7)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2610-pf11020.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11020", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2610-pf11020.yaml" } ], "pfam_ids": [ "PF11020" ], "protein_name": "Uncharacterized protein RC0324", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAHYKEFEFDCDFSGQRAKFKFYIGTPQEGHHPLQFQAKWLSDERGGTIPDDVMKAISQLNDLAKKNGVPLPDLCVYALGSAQEVQATPQDEDENESENQEDKAEQA", "sequence_length": 107, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "489a75b5fc30bd2ea7f1eeac97065a6ab685c8703bd23d67da144adfee0c1993", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q92IU6.json", "taxon_id": "272944", "uniprot_accession": "Q92IU6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2610-pf11020.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11020", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2610-pf11020.yaml" } ], "pfam_ids": [ "PF11020" ], "protein_name": "Uncharacterized protein RP240", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAHYKEFEFDCDFGGQRAKFKFYIGTPQEGHHPLQFQAKWLSDERGGTIPDEVMKAISQLNDLAKKNSVPLPDLCVYALGSAQETQVSNHEEDADVLETQDDNAEQV", "sequence_length": 107, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "20f7f7e1b8e8cded9af33c82a9d3890c0d0b1f5f7659399ca1097e13651da16c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZDT5.json", "taxon_id": "272947", "uniprot_accession": "Q9ZDT5", "uniprot_release": "2026_03" } ], "pfam_id": "PF11020", "short_name": "DUF2610", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2613-pf11021.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11021", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2613-pf11021.yaml" } ], "pfam_ids": [ "PF11021" ], "protein_name": "Putative secreted protein Mb0242c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNRIVAPAAASVVVGLLLGAAAIFGVTLMVQQDKKPPLPGGDPSSSVLNRVEYGNRS", "sequence_length": 57, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3306b1a7bcbb3fd9b12171b7e1cf4e22141cf463ac39f6342ed18a642695082e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A5C6.json", "taxon_id": "233413", "uniprot_accession": "P0A5C6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2613-pf11021.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11021", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2613-pf11021.yaml" } ], "pfam_ids": [ "PF11021" ], "protein_name": "Putative secreted protein Rv0236A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNRIVAPAAASVVVGLLLGAAAIFGVTLMVQQDKKPPLPGGDPSSSVLNRVEYGNRS", "sequence_length": 57, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3306b1a7bcbb3fd9b12171b7e1cf4e22141cf463ac39f6342ed18a642695082e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLB1.json", "taxon_id": "83332", "uniprot_accession": "P9WLB1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium leprae (strain TN)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2613-pf11021.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11021", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2613-pf11021.yaml" } ], "pfam_ids": [ "PF11021" ], "protein_name": "Putative secreted protein ML2569.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRIVAPAAASVVVGLLLGAATIFGMTLMVQQDTKPPLPGGDPQSSVLNRVEYGNRT", "sequence_length": 57, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "974ec7207731ec28948045bd8d127897e1367d11cf0b0b937b73a569ed0d9fab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CD20.json", "taxon_id": "272631", "uniprot_accession": "Q9CD20", "uniprot_release": "2026_03" } ], "pfam_id": "PF11021", "short_name": "DUF2613", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Yarrowia lipolytica (strain CLIB 122 / E 150)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/atp19-pf11022.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11022", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/atp19-pf11022.yaml" } ], "pfam_ids": [ "PF11022" ], "protein_name": "ATP synthase subunit K, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGAAYHILGKTVYPHQLAIGTIVSVVGGIVIASSGKKAEKPAAPAIQAGSSDEEKFIANFLKEQEAAEKK", "sequence_length": 70, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "47332eb85b61dbe6472c68c46531c5fe1a74d4c012bab040d3da8a0620db4966", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B5FVB3.json", "taxon_id": "284591", "uniprot_accession": "B5FVB3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/atp19-pf11022.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11022", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/atp19-pf11022.yaml" } ], "pfam_ids": [ "PF11022" ], "protein_name": "ATP synthase subunit K, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGAAYHFMGKAIPPHQLAIGTLGLLGLLVVPNPFKSAKPKTVDIKTDNKDEEKFIENYLKKHSEKQDA", "sequence_length": 68, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d93ea47555cdd6c1002db58429a6234815038ddc8403352195e5a268cc7265e8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P81451.json", "taxon_id": "559292", "uniprot_accession": "P81451", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/atp19-pf11022.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11022", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/atp19-pf11022.yaml" } ], "pfam_ids": [ "PF11022" ], "protein_name": "Uncharacterized protein YOR020W-A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGAAYKVFGKTVQPHVLAISTFIATAAVASYFTTKPKTKNEGKNSSALSQQKSGESSNSDAMGKDDDVVKSIEGFLNDLEKDTRQDTKAN", "sequence_length": 90, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8d0eb4a7a5ab58390ca414a13a35c7998757dd7595455f0f82c64c84c6199ca0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3E824.json", "taxon_id": "559292", "uniprot_accession": "Q3E824", "uniprot_release": "2026_03" } ], "pfam_id": "PF11022", "short_name": "ATP19", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus mycoides (strain KBAB4)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2614-pf11023.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11023", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2614-pf11023.yaml" } ], "pfam_ids": [ "PF11023" ], "protein_name": "UPF0295 protein BcerKBAB4_0454", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGIKYSNKINKIRTFALSLVFIGLFIAYLGVFFRENIIIMTTFMMVGFLAVIASTVVYFWIGMLSTKTIQIICPSCDKPTKMLGRVDACMHCNQPLTLDRNLEGKEFDEKYNKKSYKS", "sequence_length": 118, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aefe17bef96afc3e8f1060003bc41ac4e145035c8b37e9f7b6162967648bc7a0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A9VST4.json", "taxon_id": "315730", "uniprot_accession": "A9VST4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Exiguobacterium artemiae (strain DSM 17290 / CCUG 55495 / CIP 109462 / JCM 13490 / 255-15)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2614-pf11023.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11023", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2614-pf11023.yaml" } ], "pfam_ids": [ "PF11023" ], "protein_name": "UPF0295 protein Exig_0660", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKQRKNKINRARNLAMFLVFGGMLVMYGGLLLKQFEIIMVILMLVGFVMVLASTALYFLIGLTSTKAAVVTCPNCGKETKVLGRVDLCMHCDEPLTMDRNLEGKEFDEKYNKHSKRAPR", "sequence_length": 120, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9fd6c77da7b1c87d855753bdbba19568ebf5d9c6a019c047b001277dd56838e1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B1YK60.json", "taxon_id": "262543", "uniprot_accession": "B1YK60", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf002796.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF002796", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf002796.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2614-pf11023.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11023", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2614-pf11023.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q7WY74", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11023" ], "protein_name": "UPF0295 protein YgzB", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "9292dbe3a9551cc5d4dbac5e9e37720cbc293f383f178798ac29ab488882f54e", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAKYSSKINKIRTFALSLVFVGFIIMYIGIFFKESVLLSSLFMILGLLSIGLSTVVYFWIGMLSTKAVRVICPGCDKETKVLGVVDMCMHCREPLTLDKGLEGKEFDESYNKKKMSK", "sequence_length": 117, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "9292dbe3a9551cc5d4dbac5e9e37720cbc293f383f178798ac29ab488882f54e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7WY74.json", "taxon_id": "224308", "uniprot_accession": "Q7WY74", "uniprot_release": "2026_03" } ], "pfam_id": "PF11023", "short_name": "DUF2614", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11026", "short_name": "DUF2721", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2615-pf11027.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2615-pf11027.yaml" } ], "pfam_ids": [ "PF11027" ], "protein_name": "Small integral membrane protein 14", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEGGFDPCECICSHEHAMRRLINLLRQSQSYCTDTECLRELPGPSGDSGISITVILMAWMVIAVLLFLLRPPNLRGSSLPGKPSSPHSGQDPPAPPVD", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "73d6ec294ce5cbd0a1595dd77c1a43de5dcbfcd565711139bdf299b6260b6b37", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q498C7.json", "taxon_id": "10116", "uniprot_accession": "Q498C7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2615-pf11027.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2615-pf11027.yaml" } ], "pfam_ids": [ "PF11027" ], "protein_name": "Small integral membrane protein 14", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEGGFDPCECVCSHEHAMRRLINLLRQSQSYCTDTECLRELPGPSSDSGISITVILMAWMVIAMLLFLLRPPNLRGSSLPGKPSSPHSGQDPPAPPVD", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f52c3c4aff20415bf2e191ba3630fefa066d1284be814869c223cae5ed11c691", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91VT8.json", "taxon_id": "10090", "uniprot_accession": "Q91VT8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2615-pf11027.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2615-pf11027.yaml" } ], "pfam_ids": [ "PF11027" ], "protein_name": "Small integral 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"data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmem260-n-terminal-domain-ipr021280.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021280", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmem260-n-terminal-domain-ipr021280.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tmem260-associated-domain-2-ipr060492.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR060492", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tmem260-associated-domain-2-ipr060492.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tmem260-2-pf28495.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28495", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tmem260-2-pf28495.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tmem260-n-pf11028.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11028", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tmem260-n-pf11028.yaml" } ], "pfam_ids": [ "PF11028", "PF28495" ], "protein_name": "Protein O-mannosyl-transferase TMEM260", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGLHGDGGSPAAGAGPWRSGALRGSVAVFASVAAVFTLTLPRSLPGGDSGELITAAHELGVAHPPGYPLFTLLASLTITLFPFGSVAYRVNLLCGLFGAVAASLLFYTVFRLSGSHAGGILAAGVFSFSRLTWQWSIAAEVFSLNNLFVGLLMALTVRFEEATAAKERSKIAAIGAFSCGLSLCNQHTIVLYILCIIPWILFRLLKEKELTLSLLLRLTLAFSAGLLPYVYLPVSSYLSRARWTWGDQTTLRGFLTHFFREEYGTFSLAKSEVGSSVSTVLLSQVINMKTELSFNIQALAVWANICLARKDRRKSSVVWLFTGMLCLYSLFFAWRANLDISKPLFMGVVERFWLQSNAVVAVLAGLGLATLVSETNRVLHCTGIRNLEWLSAALFVAYQVYSNYSICDQRTNNVIDQFARNLLDSMPQDAIILLRGDLPGNALRYLHYCEGLRPDVSLVDQEMMTYEWYLPKMARHLPGVHFPGDRWNPVEGVLPSGMVTFNLYHFLEMNKQKETFVCIGIHEGDPTWKKDYSLWPWGSCDKLVPSKIVFNPEEWIERTRAIYNWTEAYERFGPSSWESVANEEMWQARMKTPFFIFSLAESAAVPADVKAQLYTHAYKLYKEIVYLQEEHPVNWHKNYAIACERMLRLPGTGIDPEVLLSEAIRHFHLYTQKAQNDPQRADIIAALKHLRRELQSLRNIKKV", "sequence_length": 703, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e211314036ec1c274716c95f33dcc4787355651113f2843ac3d81d4b31ef1b99", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BMD6.json", "taxon_id": "10090", "uniprot_accession": "Q8BMD6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmem260-n-terminal-domain-ipr021280.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021280", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-o-mannosyl-transferase-tmem260-n-terminal-domain-ipr021280.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tmem260-associated-domain-2-ipr060492.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR060492", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tmem260-associated-domain-2-ipr060492.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tmem260-2-pf28495.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28495", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tmem260-2-pf28495.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tmem260-n-pf11028.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11028", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tmem260-n-pf11028.yaml" } ], "pfam_ids": [ "PF11028", "PF28495" ], "protein_name": "Protein O-mannosyl-transferase TMEM260", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSPHGDGRGQAQGRAVRVGLRRSGGIRGGVAVFAAVAAVFTFTLPPSVPGGDSGELITAAHELGVAHPPGYPLFTLVAKLAITLFPFGSIAYRVNLLCGLFGAVAASLLFFTVFRLSGSSAGGILAAGVFSFSRLTWQWSIAAEVFSLNNLFVGLLMALTVHFEEAATAKERSKVAKIGAFCCGLSLCNQHTIILYVLCIIPWILFQLLKKKELSLGSLLKLSLYFSAGLLPYVHLPISSYLNHARWTWGDQTTLQGFLTHFLREEYGTFSLAKSEIGSSMSEILLSQVTNMRTELSFNIQALAVCANICLATKDRQNPSLVWLFTGMFCIYSLFFAWRANLDISKPLFMGVVERFWMQSNAVVAVLAGIGLAAVVSETNRVLNSNGLQCLEWLSATLFVVYQIYSNYSVCDQRTNYVIDKFAKNLLTSMPHDAIILLRGDLPGNSLRYMHYCEGLRPDISLVDQEMMTYEWYLPKMAKHLPGVNFPGNRWNPVEGILPSGMVTFNLYHFLEVNKQKETFVCIGIHEGDPTWKKNYSLWPWGSCDKLVPLEIVFNPEEWIKLTKSIYNWTEEYGRFDPSSWESVANEEMWQARMKTPFFIFNLAETAHMPSKVKAQLYAQAYDLYKEIVYLQKEHPVNWHKNYAIACERMLRLQARDADPEVLLSETIRHFRLYSQKAPNDPQQADILGALKHLRKELQSLRNRKNV", "sequence_length": 707, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c78d21e5a31ee6ede4bd9f3d12cc3a51c3561b0495b8ac6df85a8606df07c201", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NX78.json", "taxon_id": "9606", "uniprot_accession": "Q9NX78", "uniprot_release": "2026_03" } ], "pfam_id": "PF11028", "short_name": "TMEM260_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/grg1-pf11034.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11034", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/grg1-pf11034.yaml" } ], "pfam_ids": [ "PF11034" ], "protein_name": "Glucose-repressible gene protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTLKNAANYVGDKVQGATATASKEANKDVAKDSNQGVGTRLNAAGDAISDKVSENKHDAKAEAHKQGATH", "sequence_length": 71, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f32399acb55040e7b88c7472377739e9d766231ca47f02311d039b3d1116634", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P22151.json", "taxon_id": "367110", "uniprot_accession": "P22151", "uniprot_release": "2026_03" } ], "pfam_id": "PF11034", "short_name": "Grg1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella phage P22", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2824-pf11039.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11039", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2824-pf11039.yaml" } ], "pfam_ids": [ "PF11039" ], "protein_name": "Protein gp14", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MITFTPTRNIDLIEMVGNHPDIIAGSNNGDGYDYKPECRYFEVNVHGQFGGIVYYNEIQPMTFDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAARKFADGQMYCAMIGLKRVGTIKKYFKGVDDVTFYAATREELTELLNNGR", "sequence_length": 151, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9238271c9aba89a312c38dcb8b8e5b521d7daa2f82bac8ce05f083f0bd7c5632", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q01075.json", "taxon_id": "10754", "uniprot_accession": "Q01075", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acyrthosiphon pisum secondary endosymbiont phage 1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2824-pf11039.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11039", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2824-pf11039.yaml" } ], "pfam_ids": [ "PF11039" ], "protein_name": "Putative protein p31", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEIKVIENIEQFYRFFTDKAKVGYAMENNGEYQLKNNQLYVGVYEGLMLVGFFSIEFIRNKLIEVHPVFEPGFRGQYALAATKRFSNWLINNIHFSTVITYVPEKTPWGKVICQLMKMRKVGVIDNALTAGHHQINMTLYQVTKEELVNGWKQRR", "sequence_length": 155, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "62d93c6ce905802c6eafd262cc55d2cba3a5212b5bd52f047f4d798141434af0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9T1R7.json", "taxon_id": "2682836", "uniprot_accession": "Q9T1R7", "uniprot_release": "2026_03" } ], "pfam_id": "PF11039", "short_name": "DUF2824", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11041", "short_name": "Phage_Wedge1", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11042", "short_name": "DUF2750", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella phage P22", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/anti-recbcd-p2-pf11043.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11043", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/anti-recbcd-p2-pf11043.yaml" } ], "pfam_ids": [ "PF11043" ], "protein_name": "Anti-RecBCD protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPAPLYGADDPRRCSGNSVSEVLDKFRKNYDLIMSLPQETKEEKEFRHCIWLAEKEERERIYQTAIRPFRKATYTKFIEIDPRLRDYRSRYGAISNN", "sequence_length": 97, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f075fdaa850279c1270f522db911436cc518410e9ea8e817fa8b6abc85a45d8a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P11191.json", "taxon_id": "10754", "uniprot_accession": "P11191", "uniprot_release": "2026_03" } ], "pfam_id": "PF11043", "short_name": "Anti-RecBCD_p2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11059", "short_name": "DUF2860", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11060", "short_name": "DUF2861", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11061", "short_name": "Tsr0524-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11062", "short_name": "DUF2863", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11064", "short_name": "DUF2865", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11065", "short_name": "DUF2866", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/atypical-a-sdrs-subgroup-2-this-subgroup-contains-atypical-sdrs-one-me-cd05245.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05245", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/atypical-a-sdrs-subgroup-2-this-subgroup-contains-atypical-sdrs-one-me-cd05245.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2867-pf11066.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11066", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2867-pf11066.yaml" } ], "pfam_ids": [ "PF11066", "PF13460" ], "protein_name": "Putative NAD(P)-binding protein YbjT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPQRILVLGASGYIGQHLVRTLSQQGHQILAAARHVDRLAKLQLANVSCHKVDLSWPDNLPALLQDIDTVYFLVHSMGEGGDFIAQERQVALNVRDALREVPVKQLIFLSSLQAPPHEQSDHLRARQATADILREANVPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPASEHRIFEAAGPEVLSYQQQFEHFMAVSGKRRWLIPIPLPTRWISVWFLNVITSVPPTTARALIQGLKHDLLADDTALRALIPQRLIAFDDAVRSTLKEEEKLVNSSDWGYDAQAFARWRPEYGYFAKQAGFTVKTSASLAALWQVVNQIGGKERYFFGNILWQTRALMDRAIGHKLAKGRPEREYLQTGDAVDSWKVIVVEPEKQLTLLFGMKAPGLGRLCFSLEDKGDYRTIDVRAFWHPHGMPGLFYWLLMIPAHLFIFRGMAKQIARLAEQSTD", "sequence_length": 476, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3ac5ac40713bcb859463b0c4701820bae73372de34e02bfcb90b8024256a1d1d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P75822.json", "taxon_id": "83333", "uniprot_accession": "P75822", "uniprot_release": "2026_03" } ], "pfam_id": "PF11066", "short_name": "DUF2867", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2868-pf11067.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11067", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2868-pf11067.yaml" } ], "pfam_ids": [ "PF11067" ], "protein_name": "Uncharacterized membrane protein NMB1645", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLNPSRKLVELVRILDEGGFIFSGDPVQATEALRRVDGSTEEKIIRRAEMIDRNRMLRETLERVRAGSFWLWVVAATFAFFTGFSVTYLLMDNQGLNFFLVLAGVLGMNTLMLAVWLAMLFLRVKVGRFFSSPATWFRGKDPVNQAVLRLYADEWRQPSVRWKIGATSHSLWLCTLLGMLVSVLLLLLVRQYTFNWESTLLSNAASVRAVEMLAWLPSKLGFPVPDARAVIEGRLNGNIADARAWSGLLVGSIACYGILPRLLAWVVCKILLKTSENGLDLEKPYYQAVIRRWQNKITDADTRRETVSAVSPKIILNDAPKWAVMLETEWQDGEWFEGRLAQEWLDKGVATNREQVAALETELKQKPAQLLIGVRAQTVPDRGVLRQIVRLSEAAQGGAVVQLLAEQGLSDDLSEKLEHWRNALAECGAAWLEPDRAAQEGRLKDQ", "sequence_length": 446, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c5728fb70607312b5059a02d803c58374270e60b0394679ee0bfdf59c1568e83", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JYD0.json", "taxon_id": "122586", "uniprot_accession": "Q9JYD0", "uniprot_release": "2026_03" } ], "pfam_id": "PF11067", "short_name": "DUF2868", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ylqd-pf11068.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11068", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ylqd-pf11068.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/6-10-140-1110-6-10-140-1110.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.10.140.1110", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-10-140-1110-6-10-140-1110.yaml" } ], "pfam_ids": [ "PF11068" ], "protein_name": "Uncharacterized protein YlqD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQIIHRVAVMQVLTERSKEKLLASFAEKKQMLERECSQLYFQLRKHEKEQQNPNMIEQFKKAIEKRKDDIKIIDFQIAQVHTLPLGSELKEKEVDALLTIEAGDDWHEKTAANTIVIKDGKVIEIRQR", "sequence_length": 128, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "19c50dfd1be48ee6e644c709d32750ccdc48786a984f6c063db0a2548dc4c40c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31739.json", "taxon_id": "224308", "uniprot_accession": "O31739", "uniprot_release": "2026_03" } ], "pfam_id": "PF11068", "short_name": "YlqD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-cilium-movement-go0003352.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0003352", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-cilium-movement-go0003352.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap298-pf11069.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11069", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap298-pf11069.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P57076", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11069" ], "protein_name": "Cilia- and flagella-associated protein 298", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "aee4d2e0ce75cb31fe0f7d6b3f3b61e9548389c42ec881986b9e67b8b4f879a7", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVLLHVKRGDESQFLLQAPGSTELEELTVQVARVYNGRLKVQRLCSEMEELAEHGIFLPPNMQGLTDDQIEELKLKDEWGEKCVPSGGAVFKKDDIGRRNGQAPNEKMKQVLKKTIEEAKAIISKKQVEAGVCVTMEMVKDALDQLRGAVMIVYPMGLPPYDPIRMEFENKEDLSGTQAGLNVIKEAEAQLWWAAKELRRTKKLSDYVGKNEKTKIIAKIQQRGQGAPAREPIISSEEQKQLMLYYHRRQEELKRLEENDDDAYLNSPWADNTALKRHFHGVKDIKWRPR", "sequence_length": 290, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "aee4d2e0ce75cb31fe0f7d6b3f3b61e9548389c42ec881986b9e67b8b4f879a7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P57076.json", "taxon_id": "9606", "uniprot_accession": "P57076", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap298-pf11069.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11069", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap298-pf11069.yaml" } ], "pfam_ids": [ "PF11069" ], "protein_name": "Cilia- and flagella-associated protein 298", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVQLHVKRGDESQFLFNTTVDVQIETLTQQICEIYNARLKVDRICTEIPELADHGISLPPNMQGLTDDQIVELKLKDEWEERCIPSGGAEFKKDEIGRRNGHAPNEKMKDVLRRTMEEAKALISKKQLQANVCVTMEMVKEALDQLRGAVMIVYPMGLPPHDPIRMEIENQEDLTGTQASLQVITNEEAQLWWASKELHRGKKLQDYIGKNEKTKIIVKIQKRGQGAPAREPVVSEDEQKQMMLHYYKRQEELKKLEEADDDTHLQSEWSDRQALKRQFQGLTNIKWGPR", "sequence_length": 290, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "04b66d735d39752cd75f50d84e43122d149c7603df1ceb4685190f22fcddb181", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6DRC3.json", "taxon_id": "7955", "uniprot_accession": "Q6DRC3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-cilium-movement-go0003352.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0003352", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-cilium-movement-go0003352.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap298-pf11069.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11069", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap298-pf11069.yaml" } ], "pfam_ids": [ "PF11069" ], "protein_name": "Cilia- and flagella-associated protein 298", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVLHVKRGDESQFLLQAPGSTELEELTAQVARVYNGRLKVHRLCSEMEELAEHGVFLPPNMQGLTDEQIEELKLKDEWGEKCVPSGGSVFTKDEIGRRNGQAPNEKMKQVLKKTVEEAKAIVSKKQVEAGVFVTMEMVKDALDQLRGAVMIVYPMGLPPYDPIRMEFENKEDLSGTQAALEVIQESEAQLWWAAKELRRTKKLSDYVGKNEKTKIIVKIQQRGQGAPAREPVISSEEHKQLMLFYHRRQEELKKLEENDDDSCLNSPWADNTALKRHFHGVKDIKWRPR", "sequence_length": 290, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a6d39976f5d85a7430b1f9ec9196171d7728cc5bc126ef6473e6ec01a8bd3f2e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BL95.json", "taxon_id": "10090", "uniprot_accession": "Q8BL95", "uniprot_release": "2026_03" } ], "pfam_id": "PF11069", "short_name": "CFAP298", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11070", "short_name": "DUF2871", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/ytoq-family-protein-tigr03646.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR03646", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/ytoq-family-protein-tigr03646.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nuc-deoxyri-tr3-pf11071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nuc-deoxyri-tr3-pf11071.yaml" } ], "pfam_ids": [ "PF11071" ], "protein_name": "Uncharacterized protein YtoQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEFIVYLAGEIHSNWREEIKEKTKSLKLPITFVGPMENHDRSDNIGEEIMGVQPNAVLKDDKASDINNFRTAVLMNKADFVIALFGEKYKQWNTAMDASYAIAKGKPLIIIRPESLHHPLKELSNKANITVETVNQAIKALSYLFETE", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f93286c8ec88260912147d9bb1ee70f8ef08cd4f44a6723219fa390ccac60c5b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34305.json", "taxon_id": "224308", "uniprot_accession": "O34305", "uniprot_release": "2026_03" } ], "pfam_id": "PF11071", "short_name": "Nuc_deoxyri_tr3", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11072", "short_name": "DUF2859", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2779-pf11074.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11074", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2779-pf11074.yaml" } ], "pfam_ids": [ "PF11074" ], "protein_name": "Uncharacterized protein MG366", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MITKSFFLKNFDRSKELIPLSYNDVFSAVNQFLKSYTDVNDIDIIEENLIEDPVFELDVLELLNEDPMLLLDSKNPRVQEAKIIANKAKKNIKDYFNLPIFFDTDSLDKNVSVYQKAELTEKKIQEIITSKKSAIIFKPIFEIEDCLIQPDAIIVHEKGLCEFVVIKATTNTKRKYFLEIIYDFVLFKKIGKYKLLNYYFCTVKYELQNKNNVSFFLNTEIKTSKNSFSLSSKEKDYFKNKPFNHPEKIAYIHKKKSNGVNGFLIVKLIDNLIKNNIVDLNKISDFVTKEIDSKSVRNIQPLIKNAAKIQINFWDQIQDIKKYQELKINQIVFNYSENFDSFWSNYLLRNLIKLVFAHKYNEIFKLSGKLANWSQLTYAYKENKSITINQLLHELNQKKSKANFNNSTNKISFFLEAWNSEKGFAIGNKFKNTWNKLKKKKVYFDFETISSSIRIINNSLPFSQIVTQCSLIVDKNEIDDKRKLNCENLIFDPLFISVNDFKKVIDSLYQNNCSDYSFVVFNKSFEKNRLLEMATLINEQIYKEKVKAIVDNLFDLADIFTIENNCLAFKQLNGFSSIKKVLTIIDESFLKASKSIGYQNLKIQKGDVAQEVALSRFLNCLNKNEWNQVAFELKKYCENDVRAMISIVLFIQDLIKKNDLFTFYSEN", "sequence_length": 667, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2a889f0581b5601573a43dca648027127caede686abfe671f8ed83bb79c76d28", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47606.json", "taxon_id": "243273", "uniprot_accession": "P47606", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2779-pf11074.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11074", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2779-pf11074.yaml" } ], "pfam_ids": [ "PF11074" ], "protein_name": "Uncharacterized protein MG366 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLTKAFFLKNFDRSKELIPLSYADVFGAASQLLKKHHKQVDTEIDVQEDLIEDPVFEIDILELLNEAPELLFDSKNPRVKEAQIIIEKAKKDIASYFHLDNILDTDNLGLKATVTEKIQFTEKQIEAAVQNKKAAIIFKPVFTVNQCLIQPDAVVVHANGLCEFVVIKATTNTKRKFILEIIYDFLLFEKLGKYKLVNYYFCIVNYELKNKHNVSFFLNTEIKTAKNSSTSKTKEEQVLYGHLPFNDPKKIAYIHSKKSGGVNGFLLVKLVDNIIRSGVTNLEQIISFVFRELNAPSIRSLKQIISEVAKVQLDFWNIIDDVKQHQELQDNQITFNYSDAFNSFWNNYLLRNLIKLVFAYKYSEIFRLSGKLAKWDEVVEAYKENKSVKIDGFLYELNQGKMKKTKNPATSQFNKIHFFLRAWNDKKGIAVGNKFKSVWQKLKEKKVYFDFETISSAVRVIDKSLPFTQIVTQCSLIVDDNTESDKSKLVCQNLIFDPLTIGIEDFKTVVDALYQKQCDQYSFVVYNKSFEKNRLLEMATFINEAPYQQRVQAIIENLFDLADIFGLENDCLAFKQLDGFSSIKKVLPMIDQRFLDASRTVSYQSLKVQKGDVAQELTLARFLNCLDEQQWAQTALELKQYCENDVRAMIAIELFIKDFITNQL", "sequence_length": 664, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "acf62fb23659b87aca6d3b656a40c0a3ec06207e07f2731b9bb11e2621a5b30d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75234.json", "taxon_id": "272634", "uniprot_accession": "P75234", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Ureaplasma parvum serovar 3 (strain ATCC 700970)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2779-pf11074.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11074", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2779-pf11074.yaml" } ], "pfam_ids": [ "PF11074" ], "protein_name": "Uncharacterized protein UU173", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRTGKYITKYDYIGYYTKQKAMWFFTNAEIKAKIDLLLKNVSSYDFEDLDDEEEHDYEIDAYEIYKEQTDFLSQLEINKNIDVDNPKIAEGILLDKASQEDIKKTYHYIKKIINFETDPLFKNKSLEELANLTLELIDKNDKIIFFQPVFINDKLITKPDCFIKKNDEFIVIETKGTSSIKKHHILDVFYQAQVISKHPYFINKCISYQMCIVDYVKLKKNQVNFTISPYYNYQKSVVLSLPPSAANQFNKFEINELKRKRKRGEAIYLKKDENKKYYEDIDAYDHCKGILIDDLIDGTYSSINDYKEAKKIYDYKTEDLKDDVRFNKTMDELIKGIEKLHNDFDEVISELLVHKQNLLALPIEQRIPNYFIPSYNDKGDYKDNDFWLELRNLYAYSGYDVIKYSGKILTIKKFGLDNVTKDILGIDILKTYANQTFFNLYKNNQIKIYQAAVDLFAKLKSKKVYFDFESINSAIRAVDNSFPFTQTVTQNSIIIDDGSCDIKNLKCTNMIIDPREINNEWFKAIIDKIHQGLEYSYIVYNKSFEASRLKEMAEFINEEIYELKVSEIIKNMYDLADFFIVSMGKQLIVIPELKGFYSIKKVLPIIEKEFPQIYHDVNCLNYKELSVGNGLVCQTKTTKRFFNTITDLEWEQFVHDARIYCENDVRAMIAVEYFIKKLIDEAKMKNLILS", "sequence_length": 690, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5d145073b0820f9634cf07796090b5893d3c49f2533e14ea5ac34388ce8354e4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9PQX0.json", "taxon_id": "273119", "uniprot_accession": "Q9PQX0", "uniprot_release": "2026_03" } ], "pfam_id": "PF11074", "short_name": "DUF2779", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11075", "short_name": "DUF2780", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2616-pf11077.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11077", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2616-pf11077.yaml" } ], "pfam_ids": [ "PF11077" ], "protein_name": "Uncharacterized 14.9 kDa protein in LEF8-FP intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTWPYSNSFKLIKAYQKHSNTYQSCTNHKYKSVLLKKWTQDVMDNELRIESRPYKNCDAFCQMCLSVVTINEYLCCDKCLFPIIDYLEKQRQLTPRQQLYMFVFLSICYWKEAAERRLATMKN", "sequence_length": 123, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f0e4798e6d46756bed78ae2cd52d5ea91a7888ddcc1855407b5098a5b6fe364f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41456.json", "taxon_id": "46015", "uniprot_accession": "P41456", "uniprot_release": "2026_03" } ], "pfam_id": "PF11077", "short_name": "DUF2616", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ghos-pf11080.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11080", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ghos-pf11080.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/endoribonuclease-antitoxin-ghos-superfamily-ipr038241.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038241", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/endoribonuclease-antitoxin-ghos-superfamily-ipr038241.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-30-70-2360-3-30-70-2360.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.70.2360", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-30-70-2360-3-30-70-2360.yaml" } ], "pfam_ids": [ "PF11080" ], "protein_name": "Endoribonuclease antitoxin GhoS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDIDFDLNIMTVDDYFRQFYK", "sequence_length": 98, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aa57abb7d71b460b10283f4c41013aefd59ec81a3d4cac63f537edbb41461997", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AF61.json", "taxon_id": "83333", "uniprot_accession": "P0AF61", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ghos-pf11080.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11080", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ghos-pf11080.yaml" } ], "pfam_ids": [ "PF11080" ], "protein_name": "Endoribonuclease antitoxin GhoS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDIDFDLNIMTVDDYFRQFYK", "sequence_length": 98, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aa57abb7d71b460b10283f4c41013aefd59ec81a3d4cac63f537edbb41461997", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AF62.json", "taxon_id": "83334", "uniprot_accession": "P0AF62", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ghos-pf11080.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11080", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ghos-pf11080.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/endoribonuclease-antitoxin-ghos-superfamily-ipr038241.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038241", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/endoribonuclease-antitoxin-ghos-superfamily-ipr038241.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-30-70-2360-3-30-70-2360.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.70.2360", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-30-70-2360-3-30-70-2360.yaml" } ], "pfam_ids": [ "PF11080" ], "protein_name": "Uncharacterized protein YdiZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASGDLVRYVITVMLHEDTLTEINELNNYLTRDGFLLTMTDDEGNIHELGTNTFGLISTQSEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK", "sequence_length": 96, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bafd83c9aacc4747e5c4645fc36a2f35f3a2c75a1e35726d5eb76e7b797aa20e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64479.json", "taxon_id": "83333", "uniprot_accession": "P64479", "uniprot_release": "2026_03" } ], "pfam_id": "PF11080", "short_name": "GhoS", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bovine adenovirus B serotype 3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/adeno-l433k-22k-pf11081.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11081", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/adeno-l433k-22k-pf11081.yaml" } ], "pfam_ids": [ "PF11081" ], "protein_name": "Protein 33K", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKPRSMSAAGPSAAQASEGQQLPPQTAGLQPSKRAVRKVVASLNPTAALEDISEGEEGFPLTDEEDGDTLESDFSDFTDEDVEEEDMISIPRDQGHSGELEEGEIPATVAATAVKKGQGKKSRWDQQVRSTAPLKGARDPKLTKTATQSKKSRRSASAARPRPPPLPPKRARAPRRPKGQRHQADDASTEGRDKLRELIFPTLYAIFQQSRAQRCHLKVKNRSLRSLTRSCLYHNKEEQLQRTLADSEALLSKYCSAAPTRFSPPSYTESPAKDESGPA", "sequence_length": 279, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c638366309927ea33b5e52e870bc2253c3074e0f5c20179e6dabea95063cef48", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DXO8.json", "taxon_id": "10510", "uniprot_accession": "P0DXO8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human adenovirus C serotype 2", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/adeno-l433k-22k-pf11081.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11081", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/adeno-l433k-22k-pf11081.yaml" } ], "pfam_ids": [ "PF11081" ], "protein_name": "Protein 33K", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPKKKLQLPPPPPTDEEEYWDSQAEEVLDEEEEMMEDWDSLDEASEAEEVSDETPSPSVAFPSPAPQKLATVPSIATTSAPQAPPALPVRRPNRRWDTTGTRAAPTAPAAAAAAATAAVTQKQRRPDSKTLTKPKKSTAAAAAGGGALRLAPNEPVSTRELRNRIFPTLYAIFQQSRGQEQELKIKNRSLRSLTRSCLYHKSEDQLRRTLEDAEALFSKYCALTLKD", "sequence_length": 228, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "73024057c4a2c530b6e1bcd6a86abc667ba8236f0a0a5965ca00fb61d1723a0c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P24939.json", "taxon_id": "10515", "uniprot_accession": "P24939", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human adenovirus C serotype 5", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/adeno-l433k-22k-pf11081.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11081", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/adeno-l433k-22k-pf11081.yaml" } ], "pfam_ids": [ "PF11081" ], "protein_name": "Protein 33K", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPKKKLQLPPPPTDEEEYWDSQAEEVLDEEEEDMMEDWESLDEEASEVEEVSDETPSPSVAFPSPAPQKSATGSSMATTSAPQAPPALPVRRPNRRWDTTGTRAAHTAPAAAAAAATAAATQKQRRPDSKTLTKPKKSTAAAAAGGGALRLAPNEPVSTRELRNRIFPTLYAIFQQSRGQEQELKIKNRSLRSLTRSCLYHKSEDQLRRTLEDAEALFSKYCALTLKD", "sequence_length": 229, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "66669a2b66c44c2fc1eecff63c3be1a5897398e55f2b0cbd39da653deb7a8ad5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P24940.json", "taxon_id": "28285", "uniprot_accession": "P24940", "uniprot_release": "2026_03" } ], "pfam_id": "PF11081", "short_name": "Adeno_L433K_22K", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11082", "short_name": "DUF2880", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2621-pf11084.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11084", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2621-pf11084.yaml" } ], "pfam_ids": [ "PF11084" ], "protein_name": "Membrane protein YneK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLEGWFLWFILFWVIMMVVLLSIGGFFMFRKFLKRLPKEDGRSELDWQDYYIENSRHLWNDENKQFLDELTAPVPELFRDAAKAKIAGKIGELALKEKVAKIDQQLMIKGYILATPKRDHTFLKRHLRDKKIDLEPYQTLLK", "sequence_length": 142, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "42dd71fc72277ff407993de4e0a37300f5e91957bd5de5cd5d3f06eb3204d086", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P45711.json", "taxon_id": "224308", "uniprot_accession": "P45711", "uniprot_release": "2026_03" } ], "pfam_id": "PF11084", "short_name": "DUF2621", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11086", "short_name": "DUF2878", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11087", "short_name": 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"ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2627-pf11118.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2627-pf11118.yaml" } ], "pfam_ids": [ "PF11118" ], "protein_name": "Uncharacterized protein YqzF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRLLALLILVIPGAISALGIKLMRDTLFGHTIKPFSALWLQGLSGFIFFAIGLYVLAGFILYRDRKRNQVSPRFRKR", "sequence_length": 78, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60d725301227208a858d384aa574da269abeb401c1925ed22f31cbcbbc5f49db", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32015.json", "taxon_id": "224308", "uniprot_accession": "O32015", "uniprot_release": "2026_03" } ], "pfam_id": "PF11118", "short_name": "DUF2627", 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"data/traits/function/pathway/go/stress-response-to-nickel-ion-go1990532.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990532", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/stress-response-to-nickel-ion-go1990532.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2633-pf11119.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11119", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2633-pf11119.yaml" } ], "pfam_ids": [ "PF11119" ], "protein_name": "Protein YfgG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQATSMRKRHRFNSRMTRIVLLISFIFFFGRFIYSSVGAWQHHQSKKEAQQSTLSVESPVQR", "sequence_length": 63, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b273a0704cecd99127fc40a08c95fa68e5436b690c340a592b576280e854b15e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64545.json", "taxon_id": "83333", "uniprot_accession": "P64545", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2633-pf11119.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11119", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2633-pf11119.yaml" } ], "pfam_ids": [ "PF11119" ], "protein_name": "Uncharacterized protein YfgG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQATSMRKRHRFNSRMTRIVLLISFIFFFGRFIYSSVGAWQHHQSKKEAQQSTLSVESPVQR", "sequence_length": 63, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b273a0704cecd99127fc40a08c95fa68e5436b690c340a592b576280e854b15e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64546.json", "taxon_id": "83334", "uniprot_accession": "P64546", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2633-pf11119.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11119", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2633-pf11119.yaml" } ], "pfam_ids": [ "PF11119" ], "protein_name": "Uncharacterized protein YfgG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQATSMRKRHRFNSRMTRIVLLISFIFFFGRFIYSSVGAWQHHQSKKEAQQSTLSVESPVQR", "sequence_length": 63, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b273a0704cecd99127fc40a08c95fa68e5436b690c340a592b576280e854b15e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64547.json", "taxon_id": "623", "uniprot_accession": "P64547", "uniprot_release": "2026_03" } ], "pfam_id": "PF11119", "short_name": "DUF2633", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, 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"data/traits/sequence/family/pfam/cbp-bcsf-pf11120.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11120", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cbp-bcsf-pf11120.yaml" } ], "pfam_ids": [ "PF11120" ], "protein_name": "Cellulose biosynthesis protein BcsF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMTISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPRYVKPAGTLRRTEKARATKK", "sequence_length": 63, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a28cca497d0be3ac01ff32718ea18fef033f10a0110d58f3ccbd0cc96eb26b1e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADJ5.json", "taxon_id": "83333", "uniprot_accession": "P0ADJ5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", 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"MIDNQKYVILSLELHLFFSRIMKEHALFLEAGFTNKNYNLAMEADHYKKQFEDLLSYTVSASNGIIRPDILYSEELVTTLTSVAEQKTEEFTGIEINKNITTRELNLQSGVNPQVGQDLVNYVAQLNSDAIRLLDGLINFKERVLDGVLSCTIFTSNYPLLLEHIIHEANLYRSYVVDLENKIDIESKNAKEIELFWDHIMMEHALFMRGLLDPSEGELINTSNDFAIKFNELIEKTNEMTDSNIKNITEETLNETVEFKDFKEAGASGIEQCKIKSIILPLLADHVLREANHYIRILESYKNM", "sequence_length": 304, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b73252562c9a3337c6b5fb27fa583f3713a69e9e1c2fc26fd0239c7a2ff206a2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q18C29.json", "taxon_id": "272563", "uniprot_accession": "Q18C29", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2935-pf11155.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11155", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2935-pf11155.yaml" } ], "pfam_ids": [ "PF11155" ], "protein_name": "Uncharacterized protein L567", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNHYDQYQKYKKKYLDLKNQLNNSSQYGGNCGNYGNNQFNNQFNSQATNRYQTGGAEFDLKDEVAFWGRQMMEHLLLLHLGLDEEELKNSALQNHMDWKRYLTENFFSKGVNPGPDQAFLTTNELEKIGLLNKNVVNGLIDQTIQYKSKLVKTLNSGQWVGWIYPAMAQHMLEEAEYFKRKVNGPDYTPEQETKFVVHHHSTEMGATTQLLDPTEKDNIKIAKSYADICMSKLSGRNKKPFPNQWTSQEEAILRGQDPVDLATLMRISLKYSRELTQFAKETGQKIDSKQLKSIIHPVLAHHIFREFYRFTKRLEQLGAQ", "sequence_length": 320, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "44bd1136bfd5f5f6ad3709d0a72c9e22919a1cd6b0048625a5480988cf1380cc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UR50.json", "taxon_id": "212035", "uniprot_accession": "Q5UR50", "uniprot_release": "2026_03" } ], "pfam_id": "PF11155", "short_name": "DUF2935", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11157", "short_name": "DUF2937", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11158", "short_name": "DUF2938", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11159", "short_name": "DUF2939", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cryptococcus neoformans (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hva1-tudor-pf11160.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11160", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hva1-tudor-pf11160.yaml" } ], "pfam_ids": [ "PF11160" ], "protein_name": "Putative primary metabolism protein HVA1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVQDKQGQNINVGDTVYTPYRGGKHEGQVADIVTTKEEAAEKGVKNPPKVLFTDQNNKDVAHNPGTLTDLDKQK", "sequence_length": 75, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "86696ec89bcaef7b15a612ab56c20fa6c8b1a6566741b64f2f6f747579d62abf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/J9VKY2.json", "taxon_id": "235443", "uniprot_accession": "J9VKY2", "uniprot_release": "2026_03" } ], "pfam_id": "PF11160", "short_name": "Hva1_TUDOR", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11161", "short_name": "DUF2944", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11162", "short_name": "DUF2946", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11163", "short_name": "DUF2947", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11164", "short_name": "DUF2948", "status": "NO_SIBLING_CANDIDATE", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2953-pf11167.yaml" } ], "pfam_ids": [ "PF11167" ], "protein_name": "Uncharacterized protein YtfI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVYVLTAILILIGIVLLLRMKIHVALEYLHADDNDKLTLKITALFGLIRIKKTIPAIKVNKEDGTVDIKQKTESKMKKSSGKKKITQNDVQQSINKIEMLLHQVTRLRKISASFLAHLHITKLEWVTVIGIQDAAVTGVLTGAVWGVKGGIAAMLYDHLDFVNKPVYEVIPSFQVPVSKTHFQCIFFFRFGHAMLAAFKFVKYGRELSVLKKNPSARMTSKNDSSV", "sequence_length": 226, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2e481fcb960ecd89002f75712c16a971237a93f481f786f3b0ccb2958da55d22", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34917.json", "taxon_id": "224308", "uniprot_accession": "O34917", "uniprot_release": "2026_03" } ], "pfam_id": "PF11167", "short_name": "DUF2953", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11168", "short_name": "DUF2955", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11169", "short_name": "DUF2956", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11170", "short_name": "DUF2957", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11171", "short_name": "DUF2958", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11172", "short_name": "DUF2959", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": 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"LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11176", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tma16-pf11176.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/tma16-superfamily-ipr038356.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/tma16-superfamily-ipr038356.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/translation-machinery-associated-protein-16-like-1-20-1440-170.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1440.170", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/translation-machinery-associated-protein-16-like-1-20-1440-170.yaml" } ], "pfam_ids": [ "PF11176" ], "protein_name": "Translation machinery-associated protein 16", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPVTKSLSKLQKNLSKKGKNITVHPKGRKYEKLVRATMREDKIAAKKKLHQDKRVHELARVKFMQDVVNSDTFKGQPIFDHAHTREFIQSFIERDDTELDELKKKRRSNRPPSNRQVLLQQRRDQELKEFKAGFLCPDLSDAKNMEFLRNWNGTFGLLNTLRLIRINDKGEQVVGGNE", "sequence_length": 178, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e2b4cd0c1c611283895c3696c527384b8d47f3b0f292ee5eed741a58a8a408d8", "sequence_version": 2, "source_url": 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"data/traits/sequence/homologous_superfamily/interpro/tma16-superfamily-ipr038356.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/tma16-superfamily-ipr038356.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/translation-machinery-associated-protein-16-like-1-20-1440-170.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1440.170", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/translation-machinery-associated-protein-16-like-1-20-1440-170.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q96EY4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11176" ], "protein_name": "Translation machinery-associated protein 16", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1c530c203f0d3756d2f171e75691a4bf5d2db6684de048b2a4b2300cea5687a8", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPKAPKGKSAGREKKVIHPYSRKAAQITREAHKQEKKEKLKNEKALRLNLVGEKLQWFQNHLDPQKKRYSKKDACELIERYLNRFSSELEQIELHNSIRDRQGRRHCSRETVIKQTMERERQQFEGYGLEIPDILNASNLKTFREWDFDLKKLPNIKMRKICANDAIPKTCKRKTIITVDQDLGELELNDESSDSDEEMTAVA", "sequence_length": 203, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "1c530c203f0d3756d2f171e75691a4bf5d2db6684de048b2a4b2300cea5687a8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96EY4.json", "taxon_id": "9606", "uniprot_accession": "Q96EY4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tma16-pf11176.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11176", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tma16-pf11176.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/tma16-superfamily-ipr038356.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/tma16-superfamily-ipr038356.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/translation-machinery-associated-protein-16-like-1-20-1440-170.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1440.170", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/translation-machinery-associated-protein-16-like-1-20-1440-170.yaml" } ], "pfam_ids": [ "PF11176" ], "protein_name": "Translation machinery-associated protein 16", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKGLKGKMVGREKKVIHPYSRKAAQITRESHKQDKKERLKTEKALRLNLIGDKLQWFHSHLDMKKTRYSKKDACELVERYLDRFSSELEQIELQNSIKDRQGRRHHSREAVIKQTLERERQQYEGYGFEIPDILDSNTLQTFREWDFDLKKLPNIKMRKLCADDAVPKKRKQKNILNIEKDLGELELSGPTGATTDGKLEPASESSDTDEEMTPVPVSPH", "sequence_length": 221, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f61f66b10d14c981bd9c67b421eb59cb6ed54fe7c0e7b0766ccc8e22cdcd944", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CR02.json", "taxon_id": "10090", "uniprot_accession": "Q9CR02", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tma16-pf11176.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11176", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tma16-pf11176.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/tma16-superfamily-ipr038356.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/tma16-superfamily-ipr038356.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/translation-machinery-associated-protein-16-like-1-20-1440-170.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1440.170", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/translation-machinery-associated-protein-16-like-1-20-1440-170.yaml" } ], "pfam_ids": [ "PF11176" ], "protein_name": "Translation machinery-associated protein 16 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTNLRKELEKCKHPNSRKTKALGKKARRQNNKHKVRLGHAIKSNITGEKLSWFLGQIDEGRTEPLRPQELEDLIELYFTRFDEELEQINLKQSIGKHRANQHAARKDVITMTLEKERNEFRTGGLELMNLCDPLKLKMLRDWDGSALSVQHLKLDLVSYNMLQRLKEQSKKKETSEQMET", "sequence_length": 180, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eb939b6bbab5e1a99e9b126b68ca35d2e73952f06cb9b9c61dc687987d6ecaa6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VXY4.json", "taxon_id": "7227", "uniprot_accession": "Q9VXY4", "uniprot_release": "2026_03" } ], "pfam_id": "PF11176", "short_name": "Tma16", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11177", "short_name": "DUF2964", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11178", "short_name": "DUF2963", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11179", "short_name": "DUF2967", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11180", "short_name": "DUF2968", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11184", "short_name": "DUF2969", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11185", "short_name": "DUF2971", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11186", "short_name": "DUF2972", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11187", "short_name": "Mbeg1-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2975-pf11188.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11188", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2975-pf11188.yaml" } ], "pfam_ids": [ "PF11188" ], "protein_name": "Uncharacterized membrane protein YoaS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNRMSTIFLKIALVLIGIPILALCIFLVPKVANYSAELFPNIAYIKYLVFIYLYVTAIPFYFALYQAFKLLSYIDKNKAFSGLSVRALKNIKYCAVTISIFYAAGMPVFYLMAEIDDAPGIIVIGLVIIFASMVIAVFAAVLQKLLKEAIDIKSENDLTV", "sequence_length": 160, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0e3775988f9a318d703eadaf5edb946da6120635317b34a0b98c8fddb6ff5f77", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31833.json", "taxon_id": "224308", "uniprot_accession": "O31833", "uniprot_release": "2026_03" } ], "pfam_id": "PF11188", "short_name": "DUF2975", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11189", "short_name": "DUF2973", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11190", "short_name": "DUF2976", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11191", "short_name": "DUF2782", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11192", "short_name": "DUF2977", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11193", "short_name": "DUF2812", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11195", "short_name": "Tad2-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11196", "short_name": "DUF2834", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11197", "short_name": "DUF2835", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11198", "short_name": "DUF2857", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11199", "short_name": "DUF2891", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11200", "short_name": "DUF2981", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11201", "short_name": "DUF2982", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11202", "short_name": "StiP", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ecce-pf11203.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11203", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ecce-pf11203.yaml" } ], "pfam_ids": [ "PF11203" ], "protein_name": "ESX-1 secretion system protein EccE1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNFLRQFGFRFTTGHGIWAATLIPACIAICMHFDLLWLGITLGALIALFSVLTIRGLRITGWVRAIFSWRRRHRSTPDIASEPAVGSTVMPGDHVAVRWQGDYLIAVIELVPRPFTPTVIVNGSAMTDDVVNTKLVERLLEAHCPDLEADVVSAGYRVGKTAPASLIALYEQVVGPYPAPANRRTWIVLRADPEKTQRSAHRRDSGVSGLARYLVASATRIADQLASNGVDARCCRSFDDYEKATEISYERETWSSIKGRSTFTAAYTAPGGPDMWWSARADHTITRVRVRPGAAPSSAILLTTLANPTTPRGFSCLFGGQRAALQGIVPVSDKHYDLPIGSAGVLVGETADRYPVYMPFDNVDVSINLGDARLFTQFVIRSAAAGAVVTLGPQFREFATMINGRVGRTPRIGWPNATTYLGPHQGVGRVILRPNFIDTPRHRQLPIQLINPREESRYQMALEQ", "sequence_length": 464, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6952bedcf2d0c4db4b603f48fbe45388ea30520eb59c08cfd07ed24968bc855a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0QNL0.json", "taxon_id": "246196", "uniprot_accession": "A0QNL0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)", "origins": [ { "cited_uniprot_accession": "A0QQ48", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/secretion_system/esx_3_type_vii_secretion_system_membrane_complex.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "cellstructuremech:esx_3_type_vii_secretion_system_membrane_complex", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/secretion_system/esx_3_type_vii_secretion_system_membrane_complex.yaml" } ], "pfam_ids": [ "PF11203" ], "protein_name": "ESX-3 secretion system protein EccE3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTARIALASLFVVAAVLAQPWQTTTQRWVLGVSIAAVIVLLAWWKGMFLTTRIGRALAMVRRNRAEDTVETDAHRATVVLRVDPAAPAQLPVVVGYLDRYGITCDKVRITHRDAGGTRRSWISLTVDAVDNLAALQARSARIPLQDTTEVVGRRLADHLREQGWTVTVVEGVDTPLPVSGKETWRGVADDAGVVAAYRVKVDDRLDEVLAEIGHLPAEETWTALEFTGSPAEPLLTVCAAVRTSDRPAAKAPLAGLTPARGRHRPALAALNPLSTERLDGTAVPLPAVVRTSVKGSVEHEAAQEAGHPA", "sequence_length": 309, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a6929cb0c2ec4f3fe0eb023f2c354a07fe331a3f5ea5a8c875d2c8325bba26f7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0QQ48.json", "taxon_id": "246196", "uniprot_accession": "A0QQ48", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium marinum (strain ATCC BAA-535 / M)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ecce-pf11203.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11203", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ecce-pf11203.yaml" } ], "pfam_ids": [ "PF11203" ], "protein_name": "ESX-5 secretion system protein EccE5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKAQRRFGLALSWARLTTVFVIDLLILIVASHCPDSWQGENRIAWWVGVGIAVLVTLLSVVTYRGITVTSGITAWLWDWSADPGTALGAGCTPAVDHQRRFGRDTVGVREHHGRLVTVITVDDGEGDAAGRHRHRTTQSAVVPVATVAENLRQFDVQLDGVDIVTVEVRGGAEAARASASLDEWGPEEWGMVGESPAANRRRTWLILRMNPQRNVAAIASRDSLASTLVTATERLAQVLDGQSCAARPLAADELAEVDSAILAELEPTWSRPGWRHLKHFNGYATSFWVTPADINAETLDEVWLSDAPEVGATVLTLRLVMRAGEPRLSAWVRYHSDERLPKELSVGLNRLTGRQLAAVRASLPVPSTRAQLVVSSRELLDHDELELPVGQTQEHATSATTGQ", "sequence_length": 403, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e51430afa7f66362eb8d92cae499633fd65049763ff548b6fd61fcc2985f91c1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B2HSU8.json", "taxon_id": "216594", "uniprot_accession": "B2HSU8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "P9WJE3", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/secretion_system/esx_5_type_vii_secretion_system_membrane_complex.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "cellstructuremech:esx_5_type_vii_secretion_system_membrane_complex", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/secretion_system/esx_5_type_vii_secretion_system_membrane_complex.yaml" } ], "pfam_ids": [ "PF11203" ], "protein_name": "ESX-5 secretion system protein EccE5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKAQRSFGLALSWPRVTAVFLVDVLILAVASHCPDSWQADHHVAWWVGVGVAAVVTLLSVVSYHGITVISGLATWVRDWSADPGTTLGAGCTPAIDHQRRFGRDTVGVREYNGRLVSVIEVTCGESGPSGRHWHRKSPVPMLPVVAVADGLRQFDIHLDGIDIVSVLVRGGVDAAKASASLQEWEPQGWKSEERAGDRTVADRRRTWLVLRMNPQRNVAAVACRDSLASTLVAATERLVQDLDGQSCAARPVTADELTEVDSAVLADLEPTWSRPGWRHLKHFNGYATSFWVTPSDITSETLDELCLPDSPEVGTTVVTVRLTTRVGSPALSAWVRYHSDTRLPKEVAAGLNRLTGRQLAAVRASLPAPTHRPLLVIPSRNLRDHDELVLPVGQELEHATSSFVGQ", "sequence_length": 406, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3f0bd4c4218bc5947a54e027adefd262ac4d2a1907279020a88d06a597a8f37d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WJE3.json", "taxon_id": "83332", "uniprot_accession": "P9WJE3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ecce-pf11203.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11203", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ecce-pf11203.yaml" } ], "pfam_ids": [ "PF11203" ], "protein_name": "ESX-1 secretion system protein EccE1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNPLGLRFSTGHALLASALAPPCIIAFLETRYWWAGIALASLGVIVATVTFYGRRITGWVAAVYAWLRRRRRPPDSSSEPVVGATVKPGDHVAVRWQGEFLVAVIELIPRPFTPTVIVDGQAHTDDMLDTGLVEELLSVHCPDLEADIVSAGYRVGNTAAPDVVSLYQQVIGTDPAPANRRTWIVLRADPERTRKSAQRRDEGVAGLARYLVASATRIADRLASHGVDAVCGRSFDDYDHATDIGFVREKWSMIKGRDAYTAAYAAPGGPDVWWSARADHTITRVRVAPGMAPQSTVLLTTADKPKTPRGFARLFGGQRPALQGQHLVANRHCQLPIGSAGVLVGETVNRCPVYMPFDDVDIALNLGDAQTFTQFVVRAAAAGAMVTVGPQFEEFARLIGAHIGQEVKVAWPNATTYLGPHPGIDRVILRHNVIGTPRHRQLPIRRVSPPEESRYQMALPK", "sequence_length": 462, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7ffae2a4715035265854529922c9eb9c2001a8b603b3aaf78ee6579305796a36", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WJE9.json", "taxon_id": "83332", "uniprot_accession": "P9WJE9", "uniprot_release": "2026_03" } ], "pfam_id": "PF11203", "short_name": "EccE", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11204", "short_name": "DUF2985", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11205", "short_name": "DUF2987", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11207", "short_name": "DUF2989", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2992-pf11208.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11208", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2992-pf11208.yaml" } ], "pfam_ids": [ "PF11208" ], "protein_name": "Uncharacterized protein YjdF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVTFPSSGCPSFFNIFYEEGIVMKLTIYYDGQFWVGVVEVVDNGKLRAFRHLFGKEPRDSEVLEFVHNQLLNMMAQAEQEGVRLQGRRQKKINPKRLQRQVSKELKNAGVTSKAQEAIKLELEARKQKKKQIMKEQREHVKEQRYMLKKQKAKKKHRGK", "sequence_length": 160, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1e8d3ab539c1c2c1c4448485d5f5fe660d9dd8be2585404eadba5861023f5479", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31647.json", "taxon_id": "224308", "uniprot_accession": "O31647", "uniprot_release": "2026_03" } ], "pfam_id": "PF11208", "short_name": "DUF2992", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11209", "short_name": "LmeA", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11210", "short_name": "DUF2996", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11211", "short_name": "DUF2997", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11212", "short_name": "DUF2999", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11213", "short_name": "DUF3006", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11215", "short_name": "DUF3010", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11216", "short_name": "DUF3012", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11217", "short_name": "DUF3013", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aplysia dactylomela", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3011-pf11218.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3011-pf11218.yaml" } ], "pfam_ids": [ "PF11218" ], "protein_name": "Lectin ADEL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "DPDKCKTIRVESWSYKYAEKVVEDASYVLNMTVVDRQSAAACTLGESFGYQKATLWVDHGCRADFKVCYLPVMPTECQTLRVESWNYKYAEKVVEGAALFINMTVEDRQSEASCDLDKSFGFYNQNSTVWVNHGCRADFNICYLKGAVTTSTINVSSWNYQYATKVLPAASCIYSMRVVNQQSAAPCTLGTTYGFVANTMWVDDGCRADFKPSYYSP", "sequence_length": 217, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3e7f5f4c99f5c4a304326792440b4083ad5b5a34d38f3ea5f3cfdd3dfec3f66b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0HK25.json", "taxon_id": "144766", "uniprot_accession": "C0HK25", "uniprot_release": "2026_03" } ], "pfam_id": "PF11218", "short_name": "DUF3011", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11219", "short_name": "DUF3014", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11220", "short_name": "DUF3015", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11222", "short_name": "DUF3017", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spp41-duf3020-ipr021386.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021386", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spp41-duf3020-ipr021386.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3020-pf11223.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11223", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3020-pf11223.yaml" } ], "pfam_ids": [ "PF11223" ], "protein_name": "Protein SPP41", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYDEDDGEINFNELVGNLLSSHNQEGQEEGEVQGGEQEGDDFEKIYPTSENIEPKHPDDSQHMHNSPDQNIEIPHFVDEEDELVSVVANAVQNIDDEQAKPENHLENGSEHVTSDTADDNHEKEQQQEWAHILQQEILKSDGEPLRENTERRVSTSQHHPSQRTDDALDQDDENLRMAILESLQELNTNEEEEKEPEKHEHAAPNDKLSSKKSSKKKKKDKSKNRESSKDKSSKKSKSSSHSKKHAKDRNKEKQSKPTNNENTLDLSNILENLIHENDNAAIDTAKQTVDIQDNSHTDNTNNEDVEAQALVEATLKAFENELLSSAPTEEPSQEQSIGPVSSRKAVEPPRKPTADDIPLAMLQAFKPKKRPPQEKKKTKSKTSKAASTANKSPASESTSKKKKKKKTVKESNKSQEAYEDDEFSRILADMVNQVVNTSLKETSTHTATQDNKLESESDFTSPVQSQYTTEDASTANDDSLDLNQIMQNAMAMVFQNQNDDEFDENIVEDFNRGLGDLSVSDLLPHDNLSRMEKKSVPKSSSKSEKKTAISRRASKKASRDASSVELTEVPSKPKKPSKTEVSLEKKLRKKYVSIANEAASVARKKRWAKNKELKEKEKLERQTAREERRHKKKLEKQRLAEEQEELKKIVERGPPYPPDLRLTKSGKPKKPYRRWTPEELLKRSQEAEKPRKVKKERKKKEKKMKVPSSALKKIPLFNFVKGNVQPSARHRLNDIEGSLSTIGLHKSPDGVRRILSRPKSEDHEWPLSDSSASQNYDAHLKTVVHKEKIPFHPPWTIPSQPPFALPVARRKKIPNIKKYRKRTNNSFRVSKEGTASTRNRILPAILLPIINTLKAAAKSQTAAGATPEEARKRLATIIQHAKSTVIRAALQARKNSMQAAHSKGTTTELATTASRMKNPLKMIPIFNTSRVKQQLDKQLPARSAGTEISSSESPDKATPDPHSNSTIAGHTLKGVTTPIKIEDSDANVPPVSIAVSTIEPSQDKLELTKRAESVEPVENNVETAKETQSVQEIKENVGTKASEEVTLTEDKTNGDPKNEKRILIESPVEKTDKKKPGEKIATDLNEDASLSDKKDGDEKSTLHSDAAQLTGNEPDSVNTTTGKPKLIDVSLKPLNEAKPKIPIIFPLKRPQIKPEVSVINLVQNLVNTKIPEIKNESVDLGSNITDILSSTITNILPEITATDVKNYQYEDENVKYLKKTPRQVLNLDGLVPPSGRCITKAKRVRRIKKLSADATTAPEADGKANSESITYTFDIPSPEEVQSKRSVVLKFAKARLTEAELSCLKKEINNVRKRRWREMNSTKNWEYDVKSRLKKRANAFFGEGESETKSKWIEERFQEKVSQEKYKDRLETTETQANNTKIVIDDKEILNILAVNMNNLNKARCIEKDIQESFREEKLASLQPKKKRKKSILH", "sequence_length": 1435, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d93c85657601ffc43f8526a9e7b4fbdb43122a3b94272e9977a27f2dcf753607", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P38904.json", "taxon_id": "559292", "uniprot_accession": "P38904", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3020-pf11223.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11223", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3020-pf11223.yaml" } ], "pfam_ids": [ "PF11223" ], "protein_name": "Uncharacterized protein C17D1.01", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKAVYLDYLLRIRYTYVFNLKVSYQSERRTYGATEHFVGCLVPKAWNCLADDYTDIKTLLDLLFGVTAVIIFACTFKCFTMTEDGLTKLNLEAFLGVSGNTQELLESLGISAIPDLSNLGASNNNNSGLTFDPNDPSAAAFYIAQQVAAIEHPPPRKMTSSEKTRSENRERKKRWREQNEERNKDNDLRCRVNKKAKKLFGSEPSIEKTNWIEAEFTRRHTKRKEKERACLSQNQSSNASRANSQSLLPDLDLLATNSSANAVLQGSAINNALNALAKDPNLIHSLLTQIDFDPSKSKDGLNLGSLTDVVPPQPPQPEHELAALQEHNEAHDAAMRQYELERQQNAMLPGLASIDGLQALPHLDFSDSAVTNQSHSQSQNSLHPLISQSETHSIFSALSETPTPVSGNGNVADAPPDFSLSQVMPLDLIAPSMQPSAVSSPMSESHVQISSEMPRTGMSALPMRPRSQNVDKHRKFPYYNKRNAVTTPSSPYDGAQSGSPQFPPFELPPHNYSQAQSPNLATPSPSFSSLPDVSLPPIVKPNLMSEPTPTNSDEKSHALGFPPPPGQKIEFQRSSSKNGTAKSD", "sequence_length": 584, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f8f87f5b34a4524d5baa0323a912bd7cf368dd03d7d2ae384c7590bb6769bbc8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q10207.json", "taxon_id": "284812", "uniprot_accession": "Q10207", "uniprot_release": "2026_03" } ], "pfam_id": "PF11223", "short_name": "DUF3020", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11224", "short_name": "DUF3023", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11225", "short_name": "DUF3024", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11226", "short_name": "DUF3022", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11227", "short_name": "DUF3025", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3027-pf11228.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3027-pf11228.yaml" } ], "pfam_ids": [ "PF11228" ], "protein_name": "Uncharacterized protein Mb0901", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGPTEESAVATVADWPEGLAAVLRGAADQARAAVVEFSGPEAVGDYLGVSYEDGNAATHRFIAHLPGYQGWQWAVVVASYSGADHATISEVVLVPGPTALLAPDWVPWEQRVRPGDLSPGDLLAPAKDDPRLVPGYTASGDAQVDETAAEIGLGRRWVMSAWGRAQSAQRWHDGDYGPGSAMARSTKRVCRDCGFFLPLAGSLGAMFGVCGNELSADGHVVDRQYGCGAHSDTTAPAGGSTPIYEPYDDGVLDIIEKPAES", "sequence_length": 262, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0f73f22d7eb3e85d0b6e4020a743a595599bfb9b083fb1f4ab95a0ea3a7d1d51", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64734.json", "taxon_id": "233413", "uniprot_accession": "P64734", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3027-pf11228.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3027-pf11228.yaml" } ], "pfam_ids": [ "PF11228" ], "protein_name": "Uncharacterized protein MT0900", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGPTEESAVATVADWPEGLAAVLRGAADQARAAVVEFSGPEAVGDYLGVSYEDGNAATHRFIAHLPGYQGWQWAVVVASYSGADHATISEVVLVPGPTALLAPDWVPWEQRVRPGDLSPGDLLAPAKDDPRLVPGYTASGDAQVDETAAEIGLGRRWVMSAWGRAQSAQRWHDGDYGPGSAMARSTKRVCRDCGFFLPLAGSLGAMFGVCGNELSADGHVVDRQYGCGAHSDTTAPAGGSTPIYEPYDDGVLDIIEKPAES", "sequence_length": 262, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0f73f22d7eb3e85d0b6e4020a743a595599bfb9b083fb1f4ab95a0ea3a7d1d51", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKR2.json", "taxon_id": "83331", "uniprot_accession": "P9WKR2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3027-pf11228.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3027-pf11228.yaml" } ], "pfam_ids": [ "PF11228" ], "protein_name": "Uncharacterized protein Rv0877", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGPTEESAVATVADWPEGLAAVLRGAADQARAAVVEFSGPEAVGDYLGVSYEDGNAATHRFIAHLPGYQGWQWAVVVASYSGADHATISEVVLVPGPTALLAPDWVPWEQRVRPGDLSPGDLLAPAKDDPRLVPGYTASGDAQVDETAAEIGLGRRWVMSAWGRAQSAQRWHDGDYGPGSAMARSTKRVCRDCGFFLPLAGSLGAMFGVCGNELSADGHVVDRQYGCGAHSDTTAPAGGSTPIYEPYDDGVLDIIEKPAES", "sequence_length": 262, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0f73f22d7eb3e85d0b6e4020a743a595599bfb9b083fb1f4ab95a0ea3a7d1d51", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKR3.json", "taxon_id": "83332", "uniprot_accession": "P9WKR3", "uniprot_release": "2026_03" } ], "pfam_id": "PF11228", "short_name": "DUF3027", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-post-transcriptional-gene-silencing-go0060147.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0060147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-post-transcriptional-gene-silencing-go0060147.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/focadhesin-c-terminal-domain-ipr021392.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021392", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/focadhesin-c-terminal-domain-ipr021392.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/focadhesin-rst-duf3730-ipr022542.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/focadhesin-rst-duf3730-ipr022542.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf3730-pf12530.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12530", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf3730-pf12530.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/focadhesin-pf11229.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/focadhesin-pf11229.yaml" } ], "pfam_ids": [ "PF11229", "PF12530" ], "protein_name": "Focadhesin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDDIKKRFDFPNSLIQSQAVGHLIAAVLKEHGVSEKIHQSTNQTAALNLLWEKCCSDHVVVRTACSEGLVALVAQGHAEFSYVLNGILNLTPSARNMSGLIKALMKLLQMQALREGQSGEKDIQDIYSIRNPPQPLITVLEHRPDCWPLLLQQLTAFFQQCPERSEASCVQIMAPFLWYLYCEPSQLEEYAKLRLSLLKVLLQPRGVCEEAQLSVREQSTLQLCCSMLPCLQMKDLMQTTEMMLFVEEVYLSLLRHPGFWKSQLTQLTLQLLCICEVSLKITGECSSLIHLLERSVELLGEDFPVELVIIGIALLLLQMPASQQKPLLNLALKLLSLTEGQKIPKASLLLLVPLLQILSSTALEDCLAMGEEGPSRQQLALSLVEVLQKERHGDDSHTISCRLAFPVSSMYGSIFTAWRILDVIGEESATSDWLATVESLLSATTVIPPHVFLLLAYLLVEDVGQNLQQILRVTTQLAQADSSQVPNLIPVLMFKLGRPLDPVSYNHILYTLPTLGVHKVCVGQILRVIQLLGTTPRLRAVTLRLLTSLWEKQDRVYPELQRFMAVSDAPSLSVGKELQWEKLIAKAASIRDICKQRPYQHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDMRPLILKTLSELFSLVPSLTVNTVEYENFKVQVLSFLWTHTQNKNPTVASAAYKSLSHFSAGEHTILHLPEKIRPEMPVPGELDEEESVDLSIPGACFLRLLTITAPSVLPALEEFFTSLVRQEMVNMPRGIYHSALKGGVRSDQGKTVAGIPNFILKTYETNKQPGLKPGLAGGMLFCYDLAMYQSKDGKPLNRLMASRGRSFKQTTLALIHEVHVQLSEWHRAIFLPQAWLAYMTRAYHAILQGRIAELELQLQHGKEGPEEVQYKRSTAWLWVRDMLTDEITKTAAKESPVVKANALLALSSLAVVVSKHEASLCSDSDGVLEIQPNFLPVKEWVSMVLNTLLVIVDSHYHPSGQLFTCFYHKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSADESQAVQIHMGLALGMFLSRLCEEKLSDMSGQQMNLLLMKSLDALESCCFDPSLEYNTGCILGVGLALSLMSHSSHTESRVHVAASLRKLSTYLDESGSQSRTFQEVLVYTLSCVCTSAFSAGIIEAAEAEDIMSKLQLLVENNQQTSGFALALGNLVYGLSVCGHGKAEDLGNRLRPSWIKVVLTEGAPTMLCLAALHGLVALVGSDVDVMQLKSEAIQNTHFQARLNEVIRTLTEVISVSGVIGLQSNAIWLLGHLHLSTLSSNQSRTSVPTDYSYLPEGSFIRAAIGFFITGGKKGPEAVPPSLLKVVMKPIATVGESYQYPPANLAALLSPLMRLNFGEEIQQLCLEIAVTQAPSSQSAASLLGLWVMPPLIHGLSLNIKKYLLVSMPLWAKHVSDEQIQGFVENLMVEVFKTASQPCHPEMCLSALQGLSQAMKLPSPSHHLWSLLCDATGRIFDLLPNRIRRNDLELYISIAKCLSEMTDEGVNQVSQITKDNIEKAAFVKLYLVSQGRLPLMSLTDLLTAAMQHPEKETLAWMILHSLYQARIVNHANTGVLKRLEWLLELMGYVRNIAYQSAPIQNVAPEEALDFLMLIFAAAVVAWADHEAPLLLGLSASWLPWHQQNGPGGPAAALLGRSPMHRVTVQEVLTQLPRSMLLLLQKEPWKEQTQKFIDWLLSIMEIPNKAFAAKSKDLLKATLLSLRVLPEFKKKAVWTRAYGW", "sequence_length": 1798, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c08a258cb2e564868effb3387880206351ef4071172af51fbd9742b929ea69b8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2AKG8.json", "taxon_id": "10090", "uniprot_accession": "A2AKG8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/focadhesin-pf11229.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/focadhesin-pf11229.yaml" } ], "pfam_ids": [ "PF11229", "PF12530" ], "protein_name": "Focadhesin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTETLKARLEFPNSLIQAQAVRTLVAAVLKEKGQNEKICQTSTKGPALESLWEQCSSDSTVVRSACCNALVLLVEQGHADLPYVLNTTLNLLPSARNVQGLIKVVGRLLQIQAGQRENRASFTCPYSIRSFPHPYITVLENRPDCWPALLQEIDDFLQLATDKDEPVFVEMLVPFLRYLYCEPQRLSENALLRQSLLRVLLQPREAPESDRLEEKGASSTRVVRELIRSLFDLLPHMLVDSVTAVVELSSFAESLTAALISHPELWRKELTRLALQLLCACQLTIHLGGELMSLLHTLHHIIPAHAEELPAEQVIMGISLLLLNASVSQQTALLDLAVKIVPPELPPPWGASLLVMPLLHVLSCSSLMEALTDTQTHTKNQKLANSLLQTVQREPARRKEDSMQLDLPLSTWYSELQVAVSVLHRVSTDSTSSSEWLYSLQSSLSVCENVPDTVCLLVSHLIFRSDGDLCRLALETAAAIAEADPAKVPCLLPVLMFKLSRVSDPALSLSVLYTLPKLGTHKLCIPQVLHVLQTVGSSSRLRPVALRLLALLWKKQDRVYPDLQRLMCQLDKSSVVMGKDTQWEQILARAACVRDICRERPYQHGGDMLAAIRDTLLQFSRKDQATPVALALQALQELCRAEVVDICSTWKALSPKLLSDTRPLVLKATAELLALVPDLNVKTEEYEKFGSEAVGVLWGYALSQDSVVASQGFKALSEYPESSHTILHLPEQARPIPKQPEVEDEVKQNEEENEEEEDISVPGASYVKLVSLTSLSVLPALETFLTALVRQEMKQMPRGVYHSALTGGNLRSDQGKTVSGIPSFMLKMYEKNKQPGLKPGLAAGLLLCYDLPVQTDKDGRPIIRFLVSRGRSYQQMLATFIHEVNIQPSEWHRSLLLPQAWRGFMSRAFHALLQGRKAELEMLQKQGKESPEELQYQQHYAWLWVRDRLTDVVKSAAKDSPVVQGNSILALSGLAVVLTRYESNLPAQSESGPEAGPDIFPTVHWLSMVIDTLLSIVSSNSNPKAQVFPWFVHRSYSGENTASVIARSCAALGLALLVPVLVTWRRDSIPSILGTLEAGLPGSATADESQALQFHSGLALGMFLAWLLDERVSDISGQSVAELLMKHLKRLEVCCFDPNLEYNAGCVLGVGLVLSSLSSSSQCERDRVHVSHTLDRLLQSLQDSSNNSRMMQEVVAYSVACVGVSAFSAGIIEASKAEESMNTLRALTEESQQTPGFALALGQTVFGLSSFGHGKAVDIQPRLLAAWTKILLAEGCPTMQRLSALNGLIALVGSETALIQMKSECEETSLQHSRLNEVIRAITQIITFSGTIGLQSNGACLLGHLHLTHASSRHSRTAVPQDFGYLSESSVIRASVDFITEAGRKGPEFTAPQRVKTLLSALAAVGADFQYPPVNWSSVLSPLMRLGFGEEVQHYCLELAASQTQSSQSASLFLGVWLVPPLVHSLSLRTRAHLYESLSCWMKHVAEDKLQVYVDSLAVQQFEPLTRLQRLSLCLSILHGLSRAMTAPNPPQNCWSVLCSTAEKIYNLLPDSIPAAEVALYEAMCSCLSEMSDAEIDRIVKVSEANVEKTAFILSYLVSKGRVPLLGLNDVISTILQVGSKRPISWLLLQGLHQSRFASGPNTGVSKRMEWLLELMGHIRNVAYGSPSVKCVDVLQGTDFLLGVFAAAVVSWADHGGPLLVGIRARWFPWPQSAELCHGLYANPEDTELPVASCLLAIPYSIRKLLDKEPWKSQSQKFIDWLFSITEAPKQAFSETAVLTAKAALMALRSSSEFKKKTVWTRAYGW", "sequence_length": 1806, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a26f747b6406fe53bce3ec2f99dd1cb3c1c6a04c2fdcbc2c766176440628e980", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/E7FGT5.json", "taxon_id": "7955", "uniprot_accession": "E7FGT5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-post-transcriptional-gene-silencing-go0060147.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0060147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-post-transcriptional-gene-silencing-go0060147.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/focadhesin-c-terminal-domain-ipr021392.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021392", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/focadhesin-c-terminal-domain-ipr021392.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/focadhesin-rst-duf3730-ipr022542.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/focadhesin-rst-duf3730-ipr022542.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf3730-pf12530.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12530", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf3730-pf12530.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/focadhesin-pf11229.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/focadhesin-pf11229.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5VW36", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11229", "PF12530" ], "protein_name": "Focadhesin", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b6e894b6695843daac4de3eff5988e6407423964a6b6bf41518d5dfa1f204daf", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSDDIRKRFEFPNSLIQSQAVGHLIAAVLKENGFSEKIHQSTNQTPALNLLWEKCCSDNVVVRTACCEGLVALVAQDHAEFSYVLNGILNLIPSTRNTHGLIKAIMHLLQMQALKEGQGGEKNIQSIYTIRNHPHPLITVLEHRPDCWPVFLQQLTAFFQQCPERLEVSCIQIMAPFLWYLYCEPSQLQEYAKLRLALLKVLLQPQVLCDKDQPSILEQQILQLCCDIVPCLQVKDLIQTTEAMMFIEEVCLSLLRHPVFWKIQLTQMSLQLLCVSEVSLKITGECSSSIHLLEHSVELLKEDFPVELVIIGIALLLLQTPASQQKPILNLALKLLSVTEDQKIPKSSLLLVMPILQILSSTALEDCISVDEEGPSRQQLALNLLEMIQQECYRDDHQKLSYKLVCPVTSMYGTIFTAWRILEVMTDSSAASDWLASVESLLPITAVIPAPAFLLLAHLLVEDKGQNLHQILKVTTELAQADSSQVPNLIPVLMFKLGRPLEPILYNDILYTLPKLGVHKVCIGQILRIIQLLGTTPRLRAVTLRLLTSLWEKQDRVYPELQRFMAVSDVPSLSVGKEVQWEKLIAKAASIRDICKQRPYQHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTRPLILKTLSELFSLVPSLTVNTTEYENFKVQVLSFLWTHTQNKDPIVANAAYRSLANFSAGEHTILHLPEKIRPEIPIPEELDDDEDVEDVDLSVPGSCYLKLLSLTPPLVLPALEEFFTSLVKQEMVNMPRGIYHSALKGGARSDQGKTVAGIPNFILKMYETNKQPGLKPGLAGGMLFCYDVSMYQSKDGKPLNRLMASRGRSFKQTSLALVHEVHIQLSEWHRAIFLPQAWLAYMNRAYHAILQGRLGELELQLKHGKEEPEEVQYKKSTAWLWVRDMLTDEITKAAAKESPVVKGNALLALSSLAVVVSRHEASLSSDSDGLLEVQPNFLSMKEWVSMVLDTLLVIVDSHYQPRGQLLSWFYYKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSADESQAVQIHMGLALGMFLSRLCEEKLSDISGQEMNLLLMKSLDALENCCFDTSLEYNTGCILGVGLVLSLMSHSSQMQSRVHVAALLRKLSAHVDDSGSQSRTFQEVLAYTLSCVCTSAFSAGIIEATEAEDVMNKLRLLVENSQQTSGFALALGNIVHGLSVCGHGKAEDLGSKLLPAWIRIVLTEGTPTMLCLAALHGMVALVGSEGDVMQLKSEAIQTSHFQGRLNEVIRTLTQVISVSGVIGLQSNAVWLLGHLHLSTLSSSQSRASVPTDYSYLPESSFIGAAIGFFITGGKKGPESVPPSLLKVVMKPIATVGESYQYPPVNWAALLSPLMRLNFGEEIQQLCLEIMVTQAQSSQNAAALLGLWVTPPLIHSLSLNTKRYLLISAPLWIKHISDEQILGFVENLMVAVFKAASPLGSPELCPSALHGLSQAMKLPSPAHHLWSLLSEATGKIFDLLPNKIRRKDLELYISIAKCLLEMTDDDANRIAQVTKSNIEKAAFVKLYLVSQGRFPLVNLTDMLSVAVQHREKEVLAWMILHSLYQARIVSHANTGVLKRMEWLLELMGYIRNVAYQSTSFHNTALDKALDFFLLIFATAVVAWADHTAPLLLGLSASWLPWHQENGPAGPVPSFLGRSPMHRVTLQEVLTLLPNSMALLLQKEPWKEQTQKFIDWLFSIMESPKEALSAQSRDLLKATLLSLRVLPEFKKKAVWTRAYGW", "sequence_length": 1801, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b6e894b6695843daac4de3eff5988e6407423964a6b6bf41518d5dfa1f204daf", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VW36.json", "taxon_id": "9606", "uniprot_accession": "Q5VW36", "uniprot_release": "2026_03" } ], "pfam_id": "PF11229", "short_name": "Focadhesin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/yjji-family-glycine-radical-enzyme-tigr04040.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR04040", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/yjji-family-glycine-radical-enzyme-tigr04040.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/yjji-like-pf11230.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11230", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/yjji-like-pf11230.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-20-70-20-3-20-70-20.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.20.70.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-20-70-20-3-20-70-20.yaml" } ], "pfam_ids": [ "PF11230" ], "protein_name": "Uncharacterized protein YjjI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPTSHENALQQRCQQIVTSPVLSPEQKRHFLALEAENNLPYPQLPAEARRALDEGVICDMFEGHAPYKPRYVLPDYARFLANGSEWLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPYVRILTQDEIDVRIKRFWRYLDRTLPDAFMHANIGPSDSPITRAILRADAELKQVSPNLTFIYDPEITPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSLPLAGGGSTLVRLNLKAIAERSESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLVKEGLINPERFVPMFGMYGLAEAVNLLCEKEGIAARYGKEAAANEVGYRISAQLAEFVANTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPDPITHLQTVAPHHAYYYSGISDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRAEGSRTNTTWLGEEAARNTRILERQPRVISHEQQMRFSQ", "sequence_length": 516, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "456dc4664d92e25bb4497d5032addd9ab95524f4cf064e9ba473f3b0fa8f4a02", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P37342.json", "taxon_id": "83333", "uniprot_accession": "P37342", "uniprot_release": "2026_03" } ], "pfam_id": "PF11230", "short_name": "YjjI-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11231", "short_name": "DUF3034", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11233", "short_name": "DUF3035", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11236", "short_name": "DUF3037", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11237", "short_name": "DUF3038", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11238", "short_name": "DUF3039", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11239", "short_name": "DUF3040", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11240", "short_name": "DUF3042", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3043-pf11241.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11241", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3043-pf11241.yaml" } ], "pfam_ids": [ "PF11241" ], "protein_name": "Uncharacterized protein MT2262", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLLGHRKSHGHQRADASPDAGSKDGCRPDSGRTSGSDTSRGSQTTGPKGRPTPKRNQSRRHTKKGPVAPAPMTAAQARARRKSLAGPKLSREERRAEKAANRARMTERRERMMAGEEAYLLPRDRGPVRRYVRDVVDSRRNLLGLFMPSALTLLFVMFAVPQVQFYLSPAMLILLALMTIDAIILGRKVGRLVDTKFPSNTESRWRLGLYAAGRASQIRRLRAPRPQVERGGDVG", "sequence_length": 236, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "93b7ced2f5fd09c5c0f1170dda99830dee11d18a7f46bb2a3ef5b6708100fed4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLI4.json", "taxon_id": "83331", "uniprot_accession": "P9WLI4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3043-pf11241.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11241", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3043-pf11241.yaml" } ], "pfam_ids": [ "PF11241" ], "protein_name": "Uncharacterized protein Rv2206", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLLGHRKSHGHQRADASPDAGSKDGCRPDSGRTSGSDTSRGSQTTGPKGRPTPKRNQSRRHTKKGPVAPAPMTAAQARARRKSLAGPKLSREERRAEKAANRARMTERRERMMAGEEAYLLPRDRGPVRRYVRDVVDSRRNLLGLFMPSALTLLFVMFAVPQVQFYLSPAMLILLALMTIDAIILGRKVGRLVDTKFPSNTESRWRLGLYAAGRASQIRRLRAPRPQVERGGDVG", "sequence_length": 236, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "93b7ced2f5fd09c5c0f1170dda99830dee11d18a7f46bb2a3ef5b6708100fed4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLI5.json", "taxon_id": "83332", "uniprot_accession": "P9WLI5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium leprae (strain TN)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3043-pf11241.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11241", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3043-pf11241.yaml" } ], "pfam_ids": [ "PF11241" ], "protein_name": "Uncharacterized protein ML0869", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLLGRKKSYGQDIETSDDNVGSEASLPDTLSRGSSTTAPKGRPTRKRDDADRRHTKKGPITPAPMTASEARARRKSLAPPKCHRAERRAKRAASKAQITDRRERMMAGEEAYLPPRDQGPVRRYIRDLVDARRNALGLFTPSALVLLFITFGVPQLQLYMSPAMLVLLSVMGIDGIILGRKISKLVDVKFPSNTESHWRLGLYAAGRASQMRRLRVPRPQVEHGSSVG", "sequence_length": 229, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1d98078b26884d98d62decef886964fbfe6a78b5a9466f11a9ec7961596a8548", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CCF6.json", "taxon_id": "272631", "uniprot_accession": "Q9CCF6", "uniprot_release": "2026_03" } ], "pfam_id": "PF11241", "short_name": "DUF3043", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2774-pf11242.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11242", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2774-pf11242.yaml" } ], "pfam_ids": [ "PF11242" ], "protein_name": "Uncharacterized 6.6 kDa protein in Gp24-hoc intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRTEVVVFTLHESGKSFIEIARELNLQAKEVAVLWAREKVVYRKRHINKKVKNGTV", "sequence_length": 56, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7b7443c89484452c76c87dcb98271b94aa96f8c7148d74ef58e7fca99a5f8e88", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P39492.json", "taxon_id": "10665", "uniprot_accession": "P39492", "uniprot_release": "2026_03" } ], "pfam_id": "PF11242", "short_name": "DUF2774", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3045-pf11243.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11243", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3045-pf11243.yaml" } ], "pfam_ids": [ "PF11243" ], "protein_name": "Uncharacterized 10.8 kDa protein in Gp30-rIII intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFVVHTIYENEGNTTRDYGHVNQFFRCNPEFRAQKDERIFKKCVEQGFIYIKHWMQGNKVRTTYHRSLTELNDELIYNRAVNQTLKDEQ", "sequence_length": 89, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "468c9918c69f04f6fa933590835e96f56014495ac398fbfab987a23289ffac82", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P33084.json", "taxon_id": "10665", "uniprot_accession": "P33084", "uniprot_release": "2026_03" } ], "pfam_id": "PF11243", "short_name": "DUF3045", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2544-pf11245.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11245", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2544-pf11245.yaml" } ], "pfam_ids": [ "PF11245" ], "protein_name": "Uncharacterized protein YadU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIIRTLFLLLIAVYGSSVVAKPMLKATFSSTTMYYGIGPNSDKSIVAEVTIATPEGVYYGSWNLSGHRKGETLTADSWSGPEPAPKVVLKDFDNTVSRSACKNLPSNWRGCGSFTLEITVQSDDYGCPWLASSHIVATTFITNETYSPPDTRSSVCPKVPVDTFDISWDANVSKQKTTLMLDATGGTVNRTLHTYLMEGGKLCDGSKFDNRGAYCRFVSSGITLNVLGCDQSSVTTSAVDHPITDVELHDINVAVNTRNIGSGQFTSTCSFQYIIDEL", "sequence_length": 279, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99330cb940584d98a69c1aeecc0e43e71cddce34d8b8bd75fba668de0022970f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O87663.json", "taxon_id": "99287", "uniprot_accession": "O87663", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2544-pf11245.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11245", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2544-pf11245.yaml" } ], "pfam_ids": [ "PF11245" ], "protein_name": "Uncharacterized protein YfcO", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKILRWLFALVMLIATTEAMAAGHSVDVYYGYNGDSRNIATFNLKIMMPSAVYVGEYKSSQWLMTGEILQNVSWSGPPPAPSVKLIGYHQNINKASCPGLPSGWNCGYYTFEVIVSAEIESYFSCPWLVIMNDSEASPGGVTYQGPDSHDTICPSVSVQPYDVSWNENYVSKSKLLTLQSTGGVVEKTLSTYLMKDGKLCDSTQMNETGGYCRWVAQMITFTASGCDKAEVSVTPNRHPITDKQLHDMVVRVDTSSMQPIDSTCRFQYILNEL", "sequence_length": 273, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "109dcbde6556adecbea7397c9e59ccfe1db595d4f0b9ab02dff6f72d5660b61f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76498.json", "taxon_id": "83333", "uniprot_accession": "P76498", "uniprot_release": "2026_03" } ], "pfam_id": "PF11245", "short_name": "DUF2544", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11247", "short_name": "Phage_T7_55", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3046-pf11248.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11248", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3046-pf11248.yaml" } ], "pfam_ids": [ "PF11248" ], "protein_name": "Putative envelope-preserving system protein Rv2742c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLVDELGVKIVHAQHVPAPYLVQRMREIHERDENRQRHAQVDVQRRRDQPERGQHQHRRNRDADHHPDGRTLAGQIVAHPVSHRVRQPRPVAIADVLPRVGPRADCVVAHSLQGSPRRRERRRGQTAHQRLGRRSGNAIACPLYLENAAGPEPDTKRAEGRRFGAFGGGDLRWMADRVPRQGSGRRGLGSRSGAGVPQGADARGWRHTADGVPRVGQPAIRRGVPGFWCWLDHVLTGFGGRNAICAIEDGVEPRVAWWALCTDFDVPRSMGRRTPGG", "sequence_length": 277, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "86061e6fb0e5331f07b63738211947dfc1038611a7b1962baec4c7d596cea5cc", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O33285.json", "taxon_id": "83332", "uniprot_accession": "O33285", "uniprot_release": "2026_03" } ], "pfam_id": "PF11248", "short_name": "DUF3046", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11249", "short_name": "DUF3047", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fantastic-four-domain-ipr046431.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fantastic-four-domain-ipr046431.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/faf-pf11250.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11250", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/faf-pf11250.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q0V865", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11250" ], "protein_name": "Protein FAF-like, chloroplastic", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a16014ba2bc46ceb41c0d8d0abf6b1c6d50155f531d4876f84604e8732fe8fdd", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MMACGLSKSLGLSSSLKKQQGIVSILGGISSNTSSAPSLRRTFSADLSSKTWVSQNGFSPMKRISSSEKLRPDEEEAEEESRSGVDIWAQIQQDKNDKKKEEEIEPGQSDVWSSILSEKKKTESSKDTVPPPYVHPLMKRASSLSEKSLEICTESLGSETGCDGFSSHASSETGDAEIEIHDETNLVVNVTETKVEEITETEIVVEQESSIIVPNHIIELPPGSFPPPIRSLSSQSGSSLHMKTRRDNGRLVLEAVSMPSHNNFSAKRQDGRLLLTFAEISNEPNYDKEDEIDSEVQWFDEEEEEEEEEEDEEEEAPDEFAYKPNGLLYKMAQKPIPITVHRLAHKPIGVPKRNSRWPMADEFDTKSDLSTPVVHSLPPRPRVAQLARSTKPPSTVDDTVGAACFNTCDYSWKSTNTESFGPNTKTQFQAQNFVNKSMGDGWINGCKDRRRSLLSVEPFCIAT", "sequence_length": 463, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a16014ba2bc46ceb41c0d8d0abf6b1c6d50155f531d4876f84604e8732fe8fdd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0V865.json", "taxon_id": "3702", "uniprot_accession": "Q0V865", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fantastic-four-domain-ipr046431.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fantastic-four-domain-ipr046431.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/faf-pf11250.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11250", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/faf-pf11250.yaml" } ], "pfam_ids": [ "PF11250" ], "protein_name": "Protein FANTASTIC FOUR 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTVVYQQGFQSQLNEPRALRLRLSSPNPHFSQPFGLALKSHLLDSSHAEDTRNRNDDKAAASPVSDSSGWSSLQSLSSGSSSSTKTTTSSEKESSYYVQRPSSCRALSDQSLALCTENLGSESGSDVTDIDELFSLDVQTKNLGETTTETRTLKSRKRSVSPSDLPPPLTTMRGFQCIQMRPHRENGRLVMTATNAPPRNGCFQADRSNGRLRLSILKDSNEFVENEEETIEPEETEEYEEEEEEEEDEDEDEVMGIENVQVSRRCVQGDRENRGLLNWESFCVATS", "sequence_length": 288, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "78fc96dc9c229d383340b4888cc9ea6c3d7ea9f3f41bdb8eba107a517bd78b12", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NMR8.json", "taxon_id": "3702", "uniprot_accession": "Q6NMR8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fantastic-four-domain-ipr046431.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fantastic-four-domain-ipr046431.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/faf-pf11250.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11250", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/faf-pf11250.yaml" } ], "pfam_ids": [ "PF11250" ], "protein_name": "Protein FANTASTIC FOUR 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLVVCQPQINESFYQKDDMGGLSFLQSMSDITSIAQTKEDKAYVHPMEKRSVSKLNEKSLEMCTESLGTETGSESGDELSLLAFEATTTPRAPPRQLKPQEDTNLPDKTPPMSRNNSFPPPIKFVEDSKYNRMVRWLGEDGRIVVQAIRVSSPPSCFVSERGEGRLRLILTSESSLLSHNHEEEEEEETEEGIDEETSENLEGKSGNKKFSRFSRRCKENGREPKPMLTWKQQQFWVAT", "sequence_length": 240, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ae4c4e832ce717a4d5203919aebc4cdcb227833f22ece8fe7f484badc7918d50", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8GXU9.json", "taxon_id": "3702", "uniprot_accession": "Q8GXU9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fantastic-four-domain-ipr046431.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fantastic-four-domain-ipr046431.yaml" } ], "pfam_ids": [ "PF11250" ], "protein_name": "Protein FANTASTIC FOUR 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATVVYQSYFESQHFEPRALRLRLSSHTNPQLSTPLKSHFQNSSIAPQDNPITINAASLPSSSPNPSSNSDTNSGSWSFLESLSNSSSNDKEKKTLPLFQSPSSRRTLSDESLALCTESLGSETGSDIIHEDMFSISSELQTMETRTTSTTSNPSRQDRKRNTMASLPPPLTSMIGFDCIEVKSHRENGRLVMMATRPPPRNRCLQDRSNGCVRLAILIDSDDHIETETKEEKEEEEEETIETVRDNEEEIPEYKEEEEEKEEEIKVKGVEKVQRSRRCIEGDRENRGFLNWESLCVATS", "sequence_length": 300, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5d4943c6dee50f46296f5ce3783fc629ec5c2745d4e7ba7bd4a8bbeaca00ebd0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SFG6.json", "taxon_id": "3702", "uniprot_accession": "Q9SFG6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fantastic-four-domain-ipr046431.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fantastic-four-domain-ipr046431.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-30-70-2850-3-30-70-2850.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.70.2850", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-30-70-2850-3-30-70-2850.yaml" } ], "pfam_ids": [ "PF11250" ], "protein_name": "Protein FANTASTIC FOUR 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSIVVGQAYQHLPKQVSQNPDVGGWSFLQYFSEPKGIVQNREDDTKKTAYVYPIEKRSVAKLSLEMCTESLGTENGSDSGDEMSLLALEATNISKSPRLTTKPQKETSFMTRENSFPPPLNSVNGFNNSRMVKSYKEDGRLVVQAIRVCSPPRCFVSERREGRLRLCLSQNSLNSQDAEEEFEEEDEDDQYDAEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEGIVGNNENFEGKSGNKKVSNRPKRRCNENGCEPKTMLNWKQQQFWVTT", "sequence_length": 271, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bae3c4cb7f3813ef5ce9b0342c44a9d5902ace9b496e162ce120a482b2ab94a5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SY06.json", "taxon_id": "3702", "uniprot_accession": "Q9SY06", "uniprot_release": "2026_03" } ], "pfam_id": "PF11250", "short_name": "FAF", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11251", "short_name": "HamA_HO-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11252", "short_name": "DUF3051", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3052-pf11253.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11253", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3052-pf11253.yaml" } ], "pfam_ids": [ "PF11253" ], "protein_name": "Uncharacterized protein Mb2263c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPIATVCTWPAETEGGSTVVAADHASNYARKLGIQRDQLIQEWGWDEDTDDDIRAAIEEACGGELLDEDTDEVIDVVLLWWRDGDGDLVDTLMDAIGPLAEDGVIWVVTPKTGQPGHVLPAEIAEAAPTAGLMPTSSVNLGNWSASRLVQPKSRAGKR", "sequence_length": 158, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2bb99e2dd929258dfa214079d19675de9aa95e0e0f5369e1f19aa85504bb9c65", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64960.json", "taxon_id": "233413", "uniprot_accession": "P64960", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3052-pf11253.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11253", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3052-pf11253.yaml" } ], "pfam_ids": [ "PF11253" ], "protein_name": "Uncharacterized protein MT2299", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPIATVCTWPAETEGGSTVVAADHASNYARKLGIQRDQLIQEWGWDEDTDDDIRAAIEEACGGELLDEDTDEVIDVVLLWWRDGDGDLVDTLMDAIGPLAEDGVIWVVTPKTGQPGHVLPAEIAEAAPTAGLMPTSSVNLGNWSASRLVQPKSRAGKR", "sequence_length": 158, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2bb99e2dd929258dfa214079d19675de9aa95e0e0f5369e1f19aa85504bb9c65", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLG8.json", "taxon_id": "83331", "uniprot_accession": "P9WLG8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3052-pf11253.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11253", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3052-pf11253.yaml" } ], "pfam_ids": [ "PF11253" ], "protein_name": "Uncharacterized protein Rv2239c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPIATVCTWPAETEGGSTVVAADHASNYARKLGIQRDQLIQEWGWDEDTDDDIRAAIEEACGGELLDEDTDEVIDVVLLWWRDGDGDLVDTLMDAIGPLAEDGVIWVVTPKTGQPGHVLPAEIAEAAPTAGLMPTSSVNLGNWSASRLVQPKSRAGKR", "sequence_length": 158, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2bb99e2dd929258dfa214079d19675de9aa95e0e0f5369e1f19aa85504bb9c65", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLG9.json", "taxon_id": "83332", "uniprot_accession": "P9WLG9", "uniprot_release": "2026_03" } ], "pfam_id": "PF11253", "short_name": "DUF3052", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/biological-process-involved-in-symbiotic-interaction-go0044403.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044403", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/biological-process-involved-in-symbiotic-interaction-go0044403.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3053-pf11254.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3053-pf11254.yaml" } ], "pfam_ids": [ "PF11254" ], "protein_name": "Uncharacterized protein YiaF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTPADALQPLIPAAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ", "sequence_length": 236, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d8dbb435be8eb2224c6bec5a2790d635b928aa0f389e75770f38ee85db0ee4c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADK0.json", "taxon_id": "83333", "uniprot_accession": "P0ADK0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3053-pf11254.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3053-pf11254.yaml" } ], "pfam_ids": [ "PF11254" ], "protein_name": "Uncharacterized protein YiaF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTPADALQPLIPAAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ", "sequence_length": 236, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d8dbb435be8eb2224c6bec5a2790d635b928aa0f389e75770f38ee85db0ee4c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADK1.json", "taxon_id": "199310", "uniprot_accession": "P0ADK1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3053-pf11254.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3053-pf11254.yaml" } ], "pfam_ids": [ "PF11254" ], "protein_name": "Uncharacterized protein YiaF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTPADALQPLIPAAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ", "sequence_length": 236, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d8dbb435be8eb2224c6bec5a2790d635b928aa0f389e75770f38ee85db0ee4c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADK2.json", "taxon_id": "83334", "uniprot_accession": "P0ADK2", "uniprot_release": "2026_03" } ], "pfam_id": "PF11254", "short_name": "DUF3053", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11255", "short_name": "DUF3054", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11256", "short_name": "SAV0927-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf3048-c-terminal-domain-ipr035328.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035328", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf3048-c-terminal-domain-ipr035328.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf3048-n-terminal-ipr021416.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021416", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf3048-n-terminal-ipr021416.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3048-c-pf17479.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17479", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3048-c-pf17479.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3048-pf11258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3048-pf11258.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/yerb-like-superfamily-ipr023158.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023158", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yerb-like-superfamily-ipr023158.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/yerb-like-3-50-90-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.50.90.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yerb-like-3-50-90-10.yaml" } ], "pfam_ids": [ "PF11258", "PF17479" ], "protein_name": "Putative lipoprotein YerB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKWMTVCALCFVFFLLVSCQQKDAVPDTAKKLKAPLTGLKTEQKVTERRPVAVVVNNHPKARPQSGLSKADIVIEALAEGQITRFLAIFQSQMPETVGPVRSAREYFVTLSNGFDSIFVHHGWSPGAKKQLESGAADYMNGLDFDGSLFWRADFSKPPHNSYTSYDYIKKAAEQKGYKLKQETNPLLFQTSDAKPANESYNVRVDYGTNNVTNLVEYNYDKKAEFYTRSSDGVITTDRETGKPVAMQNIFIVEASHHIIDQDGRRDIDLESGGKGLLFQHGNVIETDWKQVNGRIVPVKDGKWLPFVPGKTWINIVPDLDAASISKGEGV", "sequence_length": 331, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "96da82a59f699bf922c5212038822b3db1e7c97a7301ba12891b2c849b7f401e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34968.json", "taxon_id": "224308", "uniprot_accession": "O34968", "uniprot_release": "2026_03" } ], "pfam_id": "PF11258", "short_name": "DUF3048", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11259", "short_name": "DUF3060", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Nostoc punctiforme (strain ATCC 29133 / PCC 73102)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ald-decoase-pf11266.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ald-decoase-pf11266.yaml" } ], "pfam_ids": [ "PF11266" ], "protein_name": "Aldehyde decarbonylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQQLTDQSKELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLPESHDELIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQNFQTAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKAELELANRQNLPIVWKMLNQVEGDAHTMAMEKDALVEDFMIQYGEALSNIGFSTRDIMRLSAYGLIGA", "sequence_length": 232, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "91701cedb7bf4671e5a585c75416e4babea0368293f1205c1d8abe49c3f4320c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B2J1M1.json", "taxon_id": "63737", "uniprot_accession": "B2J1M1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ald-decoase-pf11266.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ald-decoase-pf11266.yaml" } ], "pfam_ids": [ "PF11266" ], "protein_name": "Aldehyde decarbonylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPELAVRTEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLPEDKEELTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGNFQHAFSEGKVVTCLLIQALIIEAFAIAAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATAKEELEQANKENLPLVWKMLNQVQGDAKVLGMEKEALVEDFMISYGEALSNIGFSTREIMRMSSYGLAGV", "sequence_length": 231, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "056a73fce5b70223baa7fee96aae4053e076c9968b09a7c2aab662094fe66078", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q55688.json", "taxon_id": "1111708", "uniprot_accession": "Q55688", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Prochlorococcus marinus (strain MIT 9313)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ald-decoase-pf11266.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ald-decoase-pf11266.yaml" } ], "pfam_ids": [ "PF11266" ], "protein_name": "Aldehyde decarbonylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPTLEMPVAAVLDSTVGSSEALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAALVS", "sequence_length": 243, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99de9471e737f3b13013235a1b44f6b10ef0280657dd0d1dcf8915d4c7481d43", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7V6D4.json", "taxon_id": "74547", "uniprot_accession": "Q7V6D4", "uniprot_release": "2026_03" } ], "pfam_id": "PF11266", "short_name": "Ald_deCOase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11267", "short_name": "DUF3067", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3071-pf11268.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11268", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3071-pf11268.yaml" } ], "pfam_ids": [ "PF11268" ], "protein_name": "Uncharacterized protein Mb0907c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLSPKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVLTMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTATAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSNRRGKPAIPAWEDVLLGVRSGGRR", "sequence_length": 253, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4a329f1f29ac9de190342afa325d6ef4b257f5a87361de7f91f014235be3a133", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64740.json", "taxon_id": "233413", "uniprot_accession": "P64740", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3071-pf11268.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11268", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3071-pf11268.yaml" } ], "pfam_ids": [ "PF11268" ], "protein_name": "Uncharacterized protein MT0906", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLSPKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVLTMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTATAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSNRRGKPAIPAWEDVLLGVRSGGRR", "sequence_length": 253, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4a329f1f29ac9de190342afa325d6ef4b257f5a87361de7f91f014235be3a133", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKQ6.json", "taxon_id": "83331", "uniprot_accession": "P9WKQ6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3071-pf11268.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11268", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3071-pf11268.yaml" } ], "pfam_ids": [ "PF11268" ], "protein_name": "Uncharacterized protein Rv0883c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLSPKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVLTMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTATAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSNRRGKPAIPAWEDVLLGVRSGGRR", "sequence_length": 253, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4a329f1f29ac9de190342afa325d6ef4b257f5a87361de7f91f014235be3a133", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKQ7.json", "taxon_id": "83332", "uniprot_accession": "P9WKQ7", "uniprot_release": "2026_03" } ], "pfam_id": "PF11268", "short_name": "DUF3071", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11269", "short_name": "DUF3069", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11271", "short_name": "PorA", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11272", "short_name": "DUF3072", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11273", "short_name": "DUF3073", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3074-pf11274.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11274", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3074-pf11274.yaml" } ], "pfam_ids": [ "PF11274" ], "protein_name": "Uncharacterized protein C577.11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQQDLFGSDSICPISSDDVLKATDPNFESWRERIVQDALKIVEQIPKWKHLGNHDGVALYEKAPAYTGHTWYGRVSKHTRSLKTFKKGLLYEHIKKEADYDPLVFSAHQLETIIEDEIEIWMYKYKTPWFFRNRVYRQLVVSVMLDPDSFIVLQTPVTYPGSSSGGGNGVVALYDSVDFVSKKLDGDGKEEGVLWICAVRNDYGSMFSGLFSDTTFTKSLVRQVKLYNEWLNRTYPRKG", "sequence_length": 239, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eab7ec031e73376235a744b0db1dc14a2150822e8c26cb9ed91c2d6c3ff0b1e7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9USQ8.json", "taxon_id": "284812", "uniprot_accession": "Q9USQ8", "uniprot_release": "2026_03" } ], "pfam_id": "PF11274", "short_name": "DUF3074", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11275", "short_name": "DUF3077", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11276", "short_name": "DUF3078", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11278", "short_name": "DUF3079", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11279", "short_name": "DUF3080", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11280", "short_name": "DUF3081", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11281", "short_name": "DUF3083", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11282", "short_name": "DUF3082", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3084-pf11283.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11283", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3084-pf11283.yaml" } ], "pfam_ids": [ "PF11283", "PF30500" ], "protein_name": "Uncharacterized protein alr4393", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTGYILIAAILILGGVIATVGDRIGTRVGKARLSLFNLRPKNTAVLVTILTGGLVSATTLAILFIADEGLRKGVFELEDIQKDLRQKREQLKVAEEQKTQVEIERNKVNQELETTRTDKKQVETQRDQAKKEKLKAQQDLAQTQAQYQRTQSRLGQVVTQYQKAIAELQSVYNQRKALQGAVEQLKTERRRLYAEAKKAIEQRDRELANRQQAIEQRDRELANRQQALQQRDQKISQLDKIIQNRNLEIAQREEVIAKRESRLKELETQQDYLEQEVARLEKYYQSYRDLRLGKLALVRGQVLASAVIRTNQVAATRQIIIQLLQEANRNASLELSEPGSNSANIELLRITPDRIEQLIQQINDGREYVVRIFSAGNYVRGENQIEFFADTARNVLVFSGSEVLATTTADPRSMTSYQLRQRLDLLISASQFRARNAGIVEGVQIDGTFLRFVSLLRQLDQPIEIKAIAAEDTYTAGPLRVRLVAIQNGKVILST", "sequence_length": 496, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "513e1422c988430dd5c7fecef6fd1637413ff414a4cfe742313e4a2ecf47b020", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q05070.json", "taxon_id": "103690", "uniprot_accession": "Q05070", "uniprot_release": "2026_03" } ], "pfam_id": "PF11283", "short_name": "DUF3084", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11284", "short_name": "DUF3085", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11285", "short_name": "DUF3086", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11286", "short_name": "DUF3087", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11287", "short_name": "DUF3088", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11288", "short_name": "DUF3089", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Severe acute respiratory syndrome coronavirus 2", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-viroporin-pf11289.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11289", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-viroporin-pf11289.yaml" } ], "pfam_ids": [ "PF11289" ], "protein_name": "ORF3a protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEPEEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL", "sequence_length": 275, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "73041fbba65b27c6e02b3af70d86be278edbbc084c5aa01067f7cc30790a4114", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DTC3.json", "taxon_id": "2697049", "uniprot_accession": "P0DTC3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Severe acute respiratory syndrome coronavirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-viroporin-pf11289.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11289", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-viroporin-pf11289.yaml" } ], "pfam_ids": [ "PF11289" ], "protein_name": "ORF3a protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLFMRFFTLGSITAQPVKIDNASPASTVHATATIPLQASLPFGWLVIGVAFLAVFQSATKIIALNKRWQLALYKGFQFICNLLLLFVTIYSHLLLVAAGMEAQFLYLYALIYFLQCINACRIIMRCWLCWKCKSKNPLLYDANYFVCWHTHNYDYCIPYNSVTDTIVVTEGDGISTPKLKEDYQIGGYSEDRHSGVKDYVVVHGYFTEVYYQLESTQITTDTGIENATFFIFNKLVKDPPNVQIHTIDGSSGVANPAMDPIYDEPTTTTSVPL", "sequence_length": 274, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c7162c57264926cf3737564d6c794d2c2d5c7043c870b53bf52db2432ff7a343", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P59632.json", "taxon_id": "694009", "uniprot_accession": "P59632", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus HKU3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-viroporin-pf11289.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11289", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-viroporin-pf11289.yaml" } ], "pfam_ids": [ "PF11289" ], "protein_name": "Protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLFMSIFTLGAITRNPAKIENASPASTVHATATIPLQATFPFGWLIVGVALLAVFQSASKVIALHRRWQLALYKGVQLVCNMLLLFVTIYSHLLLLAACMEAQFLYIYALIYILQIVSFCRFIMRCWLCWKCRSKNPLLYDANYFVCWHTNNYDYCIPYNSVTDTVVITSGDGTNQPKLKEDYQIGGYSEDWHSGVKDYVVIYGYFTEVYYQLESTQLSTDTGAENATFFIYSKLVKDVDHVQIHTIDGSSGVVNPAMDPIYDEPTTTTSVPL", "sequence_length": 274, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d33d565b1b576e1d96f509949e64701f44420e7533c6610d87af7f30a330a8d3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3LZX0.json", "taxon_id": "442736", "uniprot_accession": "Q3LZX0", "uniprot_release": "2026_03" } ], "pfam_id": "PF11289", "short_name": "bCoV_viroporin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11290", "short_name": "DUF3090", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": 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"candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11302", "short_name": "DUF3104", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11303", "short_name": "DUF3105", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11304", "short_name": "DUF3106", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11305", "short_name": "DUF3107", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11306", "short_name": "DUF3108", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11307", "short_name": "Rv0495c", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11308", "short_name": "Glyco_hydro_129", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11309", "short_name": "DUF3112", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11310", "short_name": "DUF3113", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11311", "short_name": "DUF3114", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/rrna-uridine-n3-methyltransferase-activity-go0070042.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070042", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/rrna-uridine-n3-methyltransferase-activity-go0070042.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/methyltransf-34-pf11312.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11312", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/methyltransf-34-pf11312.yaml" } ], "pfam_ids": [ "PF11312" ], "protein_name": "25S rRNA (uridine(2843)-N(3))-methyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLMRRFAFLTSSVYFKYIPIYSQYHYSSQFPINMNPKKVAQLPVHNKSTLPPQEIIDLFKITFLEELYPKDQDNEKSPLTEQIQAVKSDLYNRDYNAAFNNDSKRIAYCCRWSPSRATSYASVFAHFPELLKIIRCEIDDKDSNVLCIGGGAGGELVALASIFTLSRDFSSKFASALKIDNEVNKKPRNLNIQLVDIADWSTVVEKLTATIKSKWLYGDSEAESFNVNFTHKDCLQMTEPQDIKIYQGLDLITLLFTTNELFTQKKVESIKFLQRLNENCAPGCHLLILESAGSYSHITINNKKFPIQFLIDTILVGNRKDKGTTGPWSLVSENDSIWYRMDPKLDYSIPLENMRFFYRLYVKN", "sequence_length": 365, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3865eb8f808c9fbf4234c534ab3a9c864d2649836e58bb4a9b17f1bfa7926a4e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12291.json", "taxon_id": "559292", "uniprot_accession": "Q12291", "uniprot_release": "2026_03" } ], "pfam_id": "PF11312", "short_name": "Methyltransf_34", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11313", "short_name": "DUF3116", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11314", "short_name": "DUF3117", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11316", "short_name": "Rhamno_transf", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11317", "short_name": "DUF3119", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11318", "short_name": "DUF3120", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11319", "short_name": "VasI", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11320", "short_name": "DUF3122", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11321", "short_name": "DUF3123", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11322", "short_name": "DUF3124", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11324", "short_name": "DUF3126", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11325", "short_name": "DUF3127", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pants-like-pf11326.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11326", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pants-like-pf11326.yaml" } ], "pfam_ids": [ "PF11326" ], "protein_name": "Early meiotic induction protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIITIKFESKEKLVSMKQYITVVGVSVNQEGTFSWRPGTFYMKIHEESAAGPFAKGAEISDLSNSSAIGCGISINQEGGDGSIRVKESSLRKKQERMSTKYPTTMSCREAFDQLTSCYSIGGQFRSYYRYGDFTSCDKQVSKFKFCIIHGNDPVKVQEWYKDQVSNNKALENTSGVIWQERETTANK", "sequence_length": 187, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9007119680a6d894cadf72e9cd04c3d13b5f09b3c2038e830a3228aeaa7cb715", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q04406.json", "taxon_id": "559292", "uniprot_accession": "Q04406", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pants-like-pf11326.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11326", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pants-like-pf11326.yaml" } ], "pfam_ids": [ "PF11326" ], "protein_name": "Synaptic plasticity regulator PANTS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVAGSWQPPRPCEVYRAEWELCRSVGHVLHHYYVHGKRPDCRQWLRDLTNCREWEESRSAEAQRSLCESEQVRVQAAQKHTLVWALRQRPPTDWNLPLPQEKDK", "sequence_length": 105, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99a0e354bde9e1bef7f9be0aeafc794636680381030211e6f872c08d680ba90f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3U595.json", "taxon_id": "10090", "uniprot_accession": "Q3U595", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pants-like-pf11326.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11326", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pants-like-pf11326.yaml" } ], "pfam_ids": [ "PF11326" ], "protein_name": "Synaptic plasticity regulator PANTS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADGSGWQPPRPCEAYRAEWKLCRSARHFLHHYYVHGERPACEQWQRDLASCRDWEERRNAEAQQSLCESERARVRAARKHILVWAPRQSPPPDWHLPLPQEKDE", "sequence_length": 105, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0f6f614dee6305b2835d99377859fedc24561774d389bcee3295911610747d4f", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P5X5.json", "taxon_id": "9606", "uniprot_accession": "Q6P5X5", "uniprot_release": "2026_03" } ], "pfam_id": "PF11326", "short_name": "PANTS-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arthrobotrys flagrans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/egh16-like-pf11327.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11327", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/egh16-like-pf11327.yaml" } ], "pfam_ids": [ "PF11327" ], "protein_name": "Lytic polysaccharide monooxygenase trsA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHFSTLLTSVTIALVGIVDVTSAHCVFVDAYGNAKPAIRGHGLGFGPFTPRKGTHLLPHQRDIAVFDDRVVHTAWNKKYRPYGCGCSAQTSAVWYDKNMRTKWKQKGSWLFSEVTPAAAFINVKKSVDFLAFQETKGVTRSCLATGRKGLKTGIPQVTAGGKLHILVYQVNLDGGGPFKCKIDYKGNGASWTTSLAVTKNCPGDQSSSFNWPGIGKTCWVSIAMPKNLNCHGKFGTNGRIEDVCLVRCENNAANGPFGGCVPIKQFRPAKKVVTEKIGTKKVVSTKIVTRKQYITTRKTIRVPVTKIIKVPAPKPTKVLPPRIKVVTVTRNTVVILTKGGVRKTTSVTKGGVITVTETVKVQPPKTSTVTVYEDEVFEEEIPEGGNDDDDDEDDASEVEADPANDDANKVAPKAAQATQEPTPEEIEAAIGGEEFDEDDIEKLKNEKVSKEDKELLQEAAESKDQKVEFEDIPDTYKLRFHRE", "sequence_length": 483, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "de5f9574362d0f3be47c62f7ddabba6ac83ae6b220b1c68912b26f3188a538aa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A437A807.json", "taxon_id": "97331", "uniprot_accession": "A0A437A807", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Verticillium dahliae (strain VdLs.17 / ATCC MYA-4575 / FGSC 10137)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/egh16-like-pf11327.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11327", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/egh16-like-pf11327.yaml" } ], "pfam_ids": [ "PF11327" ], "protein_name": "Secreted virulence factor ELV1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSFTDFLSASAVLAIAHGHGVILNAQGPAGPGSVGFQVNPDLPRNCTTISPCQQDATLIRDAEIQQNLVNECGRTELAGNIDIGENTENALAANAVTQVTKGSSIEVTIHQVNADGAGPYVCDLDQTSNGLRLVGQIPLKVTNNVPGANGFSQAKAQQFKMTVTLPDDLACTGASTGNVCTVRCRNNAVAGPFGGCFPVQQTDIEPKVNTPANLASAQSLELTLAQTQNNQADLVKALEANANAGTDEAKQNLAAVEAILNINPTTKAAPVQTPDLPAAPAASSDTVTSAPAEATEGAGAGAGADNGIGNGNGNAGNGNNRGGNAGGNNNNNNGNGAGNGNGNGRGRNGGNANRNGGAGNAGNAGAGGGRFGDNNKRSIGLRWSNRMA", "sequence_length": 389, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "825e3958914800643e0950cabd2d8f30395ce26689f2cf2779c60cadc180b928", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G2X0V4.json", "taxon_id": "498257", "uniprot_accession": "G2X0V4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/egh16-like-pf11327.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11327", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/egh16-like-pf11327.yaml" } ], "pfam_ids": [ "PF11327" ], "protein_name": "Appressoria-specific virulence factor GAS2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKYTSAILISAFAATNVFAHGVVTEVQGANGVTLPGLTAIDGTPRDCPNPGCGSEADTAIIRDRELGTSRASALGRTQGGGPVDAAKMIELFMDGASVNKSDVVAARERHAANLARRATLLPRAGGGTSTPKGTEETGVKAATGIAATKGLPTTNDDGTINIVFHQVNQDGAGPLTADIDSTSGGQDVSAFQKAKITTNVPGLGIAGLSAAQTMDFPVAVQMPAGATCSGSVGGANNVCIARLRNAAVTGPFGGSVAFTQSPAARKRAIEYNLAKRRFARSLATDEEDDE", "sequence_length": 290, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "de19eb50244bdd23fac75b15063999ab05797ba505936c0513d92519ddad76ac", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G4NF50.json", "taxon_id": "242507", "uniprot_accession": "G4NF50", "uniprot_release": "2026_03" } ], "pfam_id": "PF11327", "short_name": "Egh16-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11328", "short_name": "DUF3130", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11329", "short_name": "DUF3131", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Citrus psorosis virus (isolate Spain/P-121)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/30k-mp-core-pf17644.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17644", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/30k-mp-core-pf17644.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/30k-mp-c-ter-pf11330.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11330", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/30k-mp-c-ter-pf11330.yaml" } ], "pfam_ids": [ "PF11330", "PF17644" ], "protein_name": "Uncharacterized 54 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSMASFKSASKRISGTENVTRISANTAINSIVKKGELNVISLKDGNTADLEGINDVLLDYRRILKNEIKTAVSPITMKLKKDEHKKKLKLGTLKSITDKLRKLGGESSQPFIQFYKVQCMYIPLFSRVDGDNGEITVSLIDDGKEAAGQDPIIQSITFDASQMAMVELSMNFFVEKKDMDFIGIHVSAENVPVQDRAYGSINLAFFTNEQSVPMMQEEKKSSYLMIDAVNRPNDITKSSVFKSIGDRVSEEINQKRDDYKKKLIENEKLRRREGKGVKIETETRSSSSSDGETLLEEARKSVSLNISKFLADQRRAPPPPQLEKRTFQWPCGVKMLTMMDTGSSSHYFFSKNITPTSVEMNFGGVAQLEVERAKLSFETFGNKFLLKDVFMFSDQSLGDNILSYTLLKEEGHIDGMRTAGDDVLLEKDGEVVMILDSRDEGRMWIKDDVWAEVTEHGSKSAREYCMKVEKNEIKVE", "sequence_length": 476, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8f6adb129d83f14cab0142dd26ac13258634c5e34d9db5c06dde680c1f25e37c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6DN65.json", "taxon_id": "652963", "uniprot_accession": "Q6DN65", "uniprot_release": "2026_03" } ], "pfam_id": "PF11330", "short_name": "30K_MP_C_Ter", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/enhanced-disease-resistance-4-like-n-terminal-domain-ipr055126.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055126", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/enhanced-disease-resistance-4-like-n-terminal-domain-ipr055126.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/probable-zinc-ribbon-domain-plant-ipr021480.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/probable-zinc-ribbon-domain-plant-ipr021480.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/edr4-like-1st-pf22910.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22910", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/edr4-like-1st-pf22910.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zn-ribbon-12-pf11331.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11331", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zn-ribbon-12-pf11331.yaml" } ], "pfam_ids": [ "PF11331", "PF22910" ], "protein_name": "Protein ENHANCED DISEASE RESISTANCE 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASQTGQKIRLVRCPKCLKILQEDEDVPVYQCGGCSAILQAKRRNIAPSSTPSAGETERAQANEPQSVPETNNVSSSSGQDTVLPSSPGRSVDQEYEKGRNASMESTEKELDDLELSNGDGTNEIQEQECSLGDSEKNEREDNSRLESHMMNTVAEAAGSGSSSGSLSVDHVVAARASNPSGNSEISPDASPVEEKQSQLDILANKTPSAYDVVAARASNSSGNAEISPDASPVEEKQSQLDYPANKTSSAYDGSESSSDEREGQLLDDDEQWNALQKIRSGKFEMHRYPGYKEQGASSSSPFSENRRNGITTYNERHQNRSLQLEGPGGRLGRQGRRHVTEQLRPDMPFYPRESYTRGSPSHPSHDEFDRYPRAHSLQMPSYAGGMNHDFVDYMYHNNPRARGQGQGSRISGEMGRNHGGWYSGQLHNSYSSYSASPQRPMEQPEYHPRWRREIVSDVEDHQRNRHAGHHHELQTRRLRERQRVAKRHVRPTAGGAPFVSCYSCSENLQLPVDFLIFKRKHHLLRCGTCTTVLRFSLQSRNHLVPAVTHDINANRNSNSTSESPIDKAPSKPEKLRSSVQDEELPVARGSPLHRLMGYSTVSQVFKVSQRPPSI", "sequence_length": 615, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c7ceaae2ea77453cf3ffef339c535de2c43ec62a9a321cb7cffafe96d1b8298b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FHK4.json", "taxon_id": "3702", "uniprot_accession": "Q9FHK4", "uniprot_release": "2026_03" } ], "pfam_id": "PF11331", "short_name": "Zn_ribbon_12", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11332", "short_name": "DUF3134", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11333", "short_name": "DUF3135", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11334", "short_name": "DUF3136", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11335", "short_name": "DUF3137", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11336", "short_name": "DUF3138", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus thuringiensis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3139-pf11337.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11337", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3139-pf11337.yaml" } ], "pfam_ids": [ "PF11337" ], "protein_name": "Uncharacterized 13.4 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMAIFISIVLVVSFVLFNRVQAKKSIYNYIARQGIQESQLKYIDFHKDFKMGGYWLAVYVEGENPDIYYEYSYQDKKVNFQAYFNSEKAIKKKMWGGSGLTEIEMKKLKYPPLQ", "sequence_length": 114, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f2a65be4cccb2932a5f718c0d43b10d367de2227cd533f080f974d15fa333862", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P10024.json", "taxon_id": "1428", "uniprot_accession": "P10024", "uniprot_release": "2026_03" } ], "pfam_id": "PF11337", "short_name": "DUF3139", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11338", "short_name": "DUF3140", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhizobium meliloti", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3141-pf11339.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11339", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3141-pf11339.yaml" } ], "pfam_ids": [ "PF11339" ], "protein_name": "Uncharacterized protein in ackA 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPEQSSIPTIPTLSDAYTYALDAWQRSILFLDVMRQRGAQYEEHTAQTAPNVLDYEAELVCDGRKLDRPVNYALVRIVPPAGAVIDPLKKPFVVVDPRAGHGPGIGGFKADSEIGVAIKAGHACYFIGFLPEPVPGQTIEDITRSEAIFLETVIARHPDADGKPCVIGNCQAGWAVMILASLRPELFGPIIIAGAPLSYWAGIRGQYPMRYSGGLLGGSWLTALTGDLGAGIFDGAWLVQNFENQNPANTLWTKQYNLYSKVDTEAGRYLGFERWWGGHVRLNAEEMQFIVDELFVGNKLAAGKIQTSDGTTIDMRNIRSPIVVFCSKGDNITPPAQALDWILDLHDSVDEIRAHGQTIVYTVHEKIGHLGIFVSAGVARKEHDEFASNIDLIDVLPPGLYEAVLEPVGPAVENPDLVSGEWIMRCEARTLDDIRAFGGNDLEDDRRFAAAARVSEINLALYRTYLQPWIKGMVTPPMAEAMRSMHPLRLQYEVFGPGNPVMAWVEAAAGLIRDARQPVAPDNPLLALQENMSRQVVDGLEAWRQMVEHLSEQKFREIYGAPALQAALGIDTQTDRPPRQAAKNCWHHALLENKIAALKADMAKGGIREALARALLFVGMARGRVDERGFEAVRRLRRAHPSAKQLTLAEFKALMRTQYFMLLVDEEAALAAIPKLLPEKIEERGAAFAALREVLEAPGLLTGIAAERLQSVKALFGLSGEAPVPLMVRKVAR", "sequence_length": 733, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "31e694008e4bdb8017f4790d578c9770ca8bd63f70ae7c7a43368b559d64272f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9X447.json", "taxon_id": "382", "uniprot_accession": "Q9X447", "uniprot_release": "2026_03" } ], "pfam_id": "PF11339", "short_name": "DUF3141", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11340", "short_name": "DUF3142", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11341", "short_name": "DUF3143", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11342", "short_name": "DUF3144", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11343", "short_name": "DUF3145", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/soga-coiled-coil-domain-ipr027881.yaml" } ], "pfam_ids": [ "PF11365", "PF14818" ], "protein_name": "Microtubule cross-linking factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METLNGPAGGGAPDTKPQPAGQHHRHHHLHPLAERRRLHRAPSPARPFLKDLHTRPATATPSAGRAPTPAAPRSPSLAGKAPPSPGPPAAPGRLSRRSGVVPGAKDKPPPGAGARSAGGAKAVPGTRRAARAGPAEPLSRVGRPTGAEPPPAVAKGRKTKRGPGTPPARAVVPPARASRVPAVTLSVTSVAGCRINHTDSSSDLSDCASEPLSDEQRLLPAASSDAESGTGSSDREPIRGAPTPSSGSRGPPPGSPEPPILLAAPPVASACLGGRSSPGGASTGSPGPGSQEDVGGRAPPERTILGTSKEPSLGEQPRLLVVAEEEELLREMEELRSENDYLKDELDELRAEMEEMRDSYLEEDGYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDLKVAKDVSVRLHHELETVEEKRAKAEDDNETLRQQMIEVEVSRQALQNEVERLRESSLKRRGSREMYKEKKLVNQDDSADLKCQLQFVKEEASLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPPSTREAELKLRLKLVEEEASILGRKIVELEVENRGLKAEMEDIRVQHEREGTGRDHVPSTPTSPFGDSMESSTELRRHLQFVEEEAELLRRSISEIEDHNRQLTHELSKFKFEPHQESGWLGDGVSKGPAASVPLQEELKSARLQIDELSGKVLKLQCENRLLLSNAQRGDLAAHLGLRAPSPRDSDAESDAGKKESDGEEGRLPQPKREGPVGGESDSEDMFEKTSGFGSGKPSEASEPCPAELLRVREDTECLVTIKLEAQRLERTVERLISDTDGFIHDSGLRGNGLASPGVQGGGGEGNSPSEPHLLETINVRMKAFRKELQAFLEQMSRIVDGLSPLSHLTESSSFLSTVTSVSRDSPIGTLGKELGPDLQSKLREQLEWQLNQDRGDEREGLRLRATRELHRRADGDSGSHHGLGGQSCFNLEMEEDHLYALRWKELEMHSLALQNTLHKRTWSDEKNLLQQELRSLKQNIFLFYVKLRWLLKHWRQGKQMEEGGEDLEESEHPENVPGLAELGVQGVHQTDGIDQEDADQGCSLPMGEHAPHSLVQISEHGSRLQSSDGGPLNKQVVENQQLFRALKALLEDFRSELREDEHARLRLQQQYASDKAAWDVEWAVLKCRLEQLEEKTEKSLGELDSSAEGKGALKKEREVHQKLLADSHSLVMDLRWQIHHREKNWNREKVELLERLDSERQEWGRQKEELLWRVEQLQKEKSPRRSGSFLCSRREDDTRPYPHQGSLHSSRPVSMWPCEDADSIPFEDRPLSKLKESDRCSASENLYLDALSLDDDPGDPPPLRNCLAEEEESRKGNLQRAVSVSCMSEFQRLMDVSPFLPEKGLPSAGSKEDVTPPLSPDDLKYIEEFHSNDWDYASPRAEADRPPDPWADRTEMGRVGHEATTEPCPDPSWYLTTSVTMTTDTMTSPEHCQKQPLRTHVLTEQSGVHVLHSPPAIRRVDSIASGGEGRSRADPEGPFPMSRARGNLADAKGGHPEPVLNRWPCTPPRHPRDCVEGSLRPLDRPICPSLGFASPLNSLDMSKNMSDDMKEVAFSVRNAICAGPAEPHVRDMACQTNGSRTAGTQTIQTISVGLQTEALRASGVTSSPHKCLTPKAGGGTTPVSSPSRSLRSRQVAPAIEKVQAKFERTCCSPKYGSPKLQRKPLSKADQPNSRTSPGIPQKGFSESAWARSTTTRESPVHTTINDGLSSLFNIIDHSPIGVRAGSRSRSAEPRQELGPGQETGTSSRGRSPSPLGVGSETFREEGGESTPVRQDLSAPPGYTLTENVARILNKKLLEHALKEERKQASHGSSGLTSDSHTGEPVPAEPGSMEELPCSALAPSLEPCFSRPERPANRRLPSRWAPPSPTASQSQSPGHPMSMEEHGEEDPPEEKPHL", "sequence_length": 1945, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f795844c63a06124f91f665ca43ce61e531662667bf9214af73516cfeeef4428", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UHU5.json", "taxon_id": "10090", "uniprot_accession": "Q3UHU5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/soga-coiled-coil-domain-ipr027881.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/soga-coiled-coil-domain-ipr027881.yaml" } ], "pfam_ids": [ "PF11365" ], "protein_name": "Microtubule cross-linking factor 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQPPIGGAAPATAAASPAAAATEARLHPEGSSRKQQRAQSPARPRDSSLRQTIAATRSPVGAGTKLNSVRQQQLQQQQQQGNKTGSRTGPPASIRGGGGGAEKATPLAPKGAAPGAVQPVAGAEAAPAATLAALGGRRPGPPEEPPRELESVPSKLGEPPPLGEGGGGGGEGGGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTGSRNSGSGVAGGGSGGGGSYWKEGCLQSELIQFHLKKERAAAAAAAAQMHAKNGGGSSSRSSPVSGPPAVCETLAVASASPMAAAAEGPQQSAEGSASGGGMQAAAPPSSQPHPQQLQEQEEMQEEMEKLREENETLKNEIDELRTEMDEMRDTFFEEDACQLQEMRHELERANKNCRILQYRLRKAERKRLRYAQTGEIDGELLRSLEQDLKVAKDVSVRLHHELENVEEKRTTTEDENEKLRQQLIEVEIAKQALQNELEKMKELSLKRRGSKDLPKSEKKAQQTPTEEDNEDLKCQLQFVKEEAALMRKKMAKIDKEKDRFEHELQKYRSFYGDLDSPLPKGEAGGPPSTREAELKLRLRLVEEEANILGRKIVELEVENRGLKAELDDLRGDDFNGSANPLMREQSESLSELRQHLQLVEDETELLRRNVADLEEQNKRITAELNKYKYKSGGHDSARHHDNAKTEALQEELKAARLQINELSGKVMQLQYENRVLMSNMQRYDLASHLGIRGSPRDSDAESDAGKKESDDDSRPPHRKREGPIGGESDSEEVRNIRCLTPTRSFYPAPGPWPKSFSDRQQMKDIRSEAERLGKTIDRLIADTSTIITEARIYVANGDLFGLMDEEDDGSRIREHELLYRINAQMKAFRKELQTFIDRLEVPKSADDRGAEEPISVSQMFQPIILLILILVLFSSLSYTTIFKLVFLFTLFFVL", "sequence_length": 947, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "40e3dee4a1b80e9d09e352ef04bef796e4015cd28259698964f58b22a38cbf28", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5TF21.json", "taxon_id": "9606", "uniprot_accession": "Q5TF21", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/soga-coiled-coil-domain-ipr027881.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/soga-coiled-coil-domain-ipr027881.yaml" } ], "pfam_ids": [ "PF11365" ], "protein_name": "Microtubule cross-linking factor 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQPPSGGAAPAATSASAAAAATEARMHPEGCSRKQQRAQSPARPRDNSLRQTAGATRSPLGVGPKLNSVRQQQLQQQQQQGNKITGRSTSGTGSRGLGGGAEKAVPSIPKGAVPGAVQPAPGAEGSPAAILASVSFRRSGQPEEAPREIESGPSKVGEPPPLGGVGGGGEGGGAGGGPGDREGGAPQPPPPRGWRGKGVRATQRGSSVAEGVSPSPPTAATSKTPGPGSRNSGSGSTGSGSGGGGSYWKEGCLQSELIQFHLKKERAAAAAAAAQMHTKNGGGGSRSSPVAGAPAICEPLVVPSSSPMAAAAEGPQQSAEGNGSGGAMQAAAPPSSQPHSQQLQEQEDMQEEMEKLREENETLKNEIDELRTEMDEMRDTFFEEDACQLQEMRHELERANKNCRILQYRLRKAERKRLRYAQTGEIDGELLRSLEQDLKVAKDVSVRLHHELENVEEKRTTTEDENEKLRQQLIEVEIAKQALQNELEKMKELSLKRRGSKDLPKSEKKAQQTPTEDDNEDLKCQLQFVKEEAALMRKKMAKIDKEKDRFEHELQKYRSFYGDLDSPLPKGEAGGPPSTREAELKLRLRLVEEEANILGRKIVELEVENRGLKAELDDLRGEDFNGSSNPLMREQSESLSELRQHLQLVEDETELLRRNVADLEEQNKRITAELNKYKYKSSGHDSSRHHDNAKTEALQEELKAARLQINELSGKVMQLQYENRVLMSNMQRYDLASHLGIRGSPRDSDAESDAGKKESDDDSRPPHRKREGPIGGESDSEEVRNIRSLTPTRSFYPTPGPWPKSFSDRQQMKDIRSEAERLGKTIDRLIADTSTIITEARIYVANGDLFGLMDEEDDGSRIREHELLYRINAQMKAFRKELQTFIDRLEVPKSADDRGAEEPISVSQMFQPIILLILILVLFSSLSYTTIFKLVFLFTLFFVL", "sequence_length": 945, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f9b53ddffaa0d96dd529d662cc8cb7a30d798564b37e1722e2a44fc876b8093", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NZL0.json", "taxon_id": "10090", "uniprot_accession": "Q6NZL0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/microtubule-bundle-go0097427.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/microtubule-bundle-go0097427.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/soga-1-2-like-coiled-coil-ipr027882.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/soga-1-2-like-coiled-coil-ipr027882.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/soga-coiled-coil-domain-ipr027881.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/soga-coiled-coil-domain-ipr027881.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/soga-pf11365.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF11365", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/soga-pf11365.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/soga1-2-like-cc-pf14818.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14818", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/soga1-2-like-cc-pf14818.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9Y4B5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11365", "PF14818" ], "protein_name": "Microtubule cross-linking factor 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4e2ff31655da55e652f8b61b14b46f427feb393004e17f472c69e4497c930672", "sequence_version": 5, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "METLNGPAGGGAPDAKLQPPGQHHRHHHLHPVAERRRLHRAPSPARPFLKDLHARPAAPGPAVPSSGRAPAPAAPRSPNLAGKAPPSPGSLAAPGRLSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPLSRAGKPPGAEPPSAAAKGRKAKRGSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCSRISHTDSSSDLSDCPSEPLSDEQRLLPAASSDAESGTGSSDREPPRGAPTPSPAARGAPPGSPEPPALLAAPLAAGACPGGRSIPSGVSGGFAGPGVAEDVRGRSPPERPVPGTPKEPSLGEQSRLVPAAEEEELLREMEELRSENDYLKDELDELRAEMEEMRDSYLEEDVYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDLKVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKTFNQDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPPSTREAELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQEREGPGRDHAPSIPTSPFGDSLESSTELRRHLQFVEEEAELLRRSISEIEDHNRQLTHELSKFKFEPPREPGWLGEGASPGAGGGAPLQEELKSARLQISELSGKVLKLQHENHALLSNIQRCDLAAHLGLRAPSPRDSDAESDAGKKESDGEESRLPQPKREGPVGGESDSEEMFEKTSGFGSGKPSEASEPCPTELLKAREDSEYLVTLKHEAQRLERTVERLITDTDSFLHDAGLRGGAPLPGPGLQGEEEQGEGDQQEPQLLGTINAKMKAFKKELQAFLEQVNRIGDGLSPLPHLTESSSFLSTVTSVSRDSPIGNLGKELGPDLQSRLKEQLEWQLGPARGDERESLRLRAARELHRRADGDTGSHGLGGQTCFSLEMEEEHLYALRWKELEMHSLALQNTLHERTWSDEKNLMQQELRSLKQNIFLFYVKLRWLLKHWRQGKQMEEEGEEFTEGEHPETLSRLGELGVQGGHQADGPDHDSDRGCGFPVGEHSPHSRVQIGDHSLRLQTADRGQPHKQVVENQQLFSAFKALLEDFRAELREDERARLRLQQQYASDKAAWDVEWAVLKCRLEQLEEKTENKLGELGSSAESKGALKKEREVHQKLLADSHSLVMDLRWQIHHSEKNWNREKVELLDRLDRDRQEWERQKKEFLWRIEQLQKENSPRRGGSFLCDQKDGNVRPFPHQGSLRMPRPVAMWPCADADSIPFEDRPLSKLKESDRCSASENLYLDALSLDDEPEEPPAHRPEREFRNRLPEEEENHKGNLQRAVSVSSMSEFQRLMDISPFLPEKGLPSTSSKEDVTPPLSPDDLKYIEEFNKSWDYTPNRGHNGGGPDLWADRTEVGRAGHEDSTEPFPDSSWYLTTSVTMTTDTMTSPEHCQKQPLRSHVLTEQSGLRVLHSPPAVRRVDSITAAGGEGPFPTSRARGSPGDTKGGPPEPMLSRWPCTSPRHSRDYVEGARRPLDSPLCTSLGFASPLHSLEMSKNLSDDMKEVAFSVRNAICSGPGELQVKDMACQTNGSRTMGTQTVQTISVGLQTEALRGSGVTSSPHKCLTPKAGGGATPVSSPSRSLRSRQVAPAIEKVQAKFERTCCSPKYGSPKLQRKPLPKADQPNNRTSPGMAQKGYSESAWARSTTTRESPVHTTINDGLSSLFNIIDHSPVVQDPFQKGLRAGSRSRSAEPRPELGPGQETGTNSRGRSPSPIGVGSEMCREEGGEGTPVKQDLSAPPGYTLTENVARILNKKLLEHALKEERRQAAHGPPGLHSDSHSLGDTAEPGPMENQTVLLTAPWGL", "sequence_length": 1905, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4e2ff31655da55e652f8b61b14b46f427feb393004e17f472c69e4497c930672", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y4B5.json", "taxon_id": "9606", "uniprot_accession": "Q9Y4B5", "uniprot_release": "2026_03" } ], "pfam_id": "PF11365", "short_name": "SOGA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11367", "short_name": "Tail_completion_gp17", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11368", "short_name": "DUF3169", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11369", "short_name": "DUF3160", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11371", "short_name": "DUF3172", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11372", "short_name": "DUF3173", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11373", "short_name": "DUF3175", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11374", "short_name": "DUF3176", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11375", "short_name": "DUF3177", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11376", "short_name": "DUF3179", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11377", "short_name": "DUF3180", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3181-pf11378.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11378", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3181-pf11378.yaml" } ], "pfam_ids": [ "PF11378" ], "protein_name": "Thylakoid-associated protein slr0729", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSTTPEIEALAADIGEQIAIDVAKWNLFLAEAHLHIPLAERVYPLLEKDELGRAGVEAALKDLSVAIGGGKVNISLLDALSSTMVNRLLTLLEEYQSKNF", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "930e054fbb89c9d34b256cae8472da8932185257b38388d57379686893736354", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P72673.json", "taxon_id": "1111708", "uniprot_accession": "P72673", "uniprot_release": "2026_03" } ], "pfam_id": "PF11378", "short_name": "DUF3181", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11379", "short_name": "DUF3182", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dmap-binding-pf06464.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06464", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dmap-binding-pf06464.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glcnac-1-reg-pf18440.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18440", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glcnac-1-reg-pf18440.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-gnptab-pf26737.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26737", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-gnptab-pf26737.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/stealth-cr2-pf11380.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11380", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/stealth-cr2-pf11380.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q3T906", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00066", "PF06464", "PF11380", "PF17101", "PF17102", "PF17103", "PF18440", "PF26737" ], "protein_name": "N-acetylglucosamine-1-phosphotransferase subunits alpha/beta", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "5d02ea965a94ce6e4b51b4ce814e7a7c6237b061dec879a844b672841ba0dcf0", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLFKLLQRQTYTCLSHRYGLYVCFLGVVVTIVSAFQFGEVVLEWSRDQYHVLFDSYRDNIAGKSFQNRLCLPMPIDVVYTWVNGTDLELLKELQQVREQMEEEQKAMREILGKNTTEPTKKSEKQLECLLTHCIKVPMLVLDPALPANITLKDLPSLYPSFHSASDIFNVAKPKNPSTNVSVVVFDSTKDVEDAHSGLLKGNSRQTVWRGYLTTDKEVPGLVLMQDLAFLSGFPPTFKETNQLKTKLPENLSSKVKLLQLYSEASVALLKLNNPKDFQELNKQTKKNMTIDGKELTISPAYLLWDLSAISQSKQDEDISASRFEDNEELRYSLRSIERHAPWVRNIFIVTNGQIPSWLNLDNPRVTIVTHQDVFRNLSHLPTFSSPAIESHIHRIEGLSQKFIYLNDDVMFGKDVWPDDFYSHSKGQKVYLTWPVPNCAEGCPGSWIKDGYCDKACNNSACDWDGGDCSGNSGGSRYIAGGGGTGSIGVGQPWQFGGGINSVSYCNQGCANSWLADKFCDQACNVLSCGFDAGDCGQDHFHELYKVILLPNQTHYIIPKGECLPYFSFAEVAKRGVEGAYSDNPIIRHASIANKWKTIHLIMHSGMNATTIHFNLTFQNTNDEEFKMQITVEVDTREGPKLNSTAQKGYENLVSPITLLPEAEILFEDIPKEKRFPKFKRHDVNSTRRAQEEVKIPLVNISLLPKDAQLSLNTLDLQLEHGDITLKGYNLSKSALLRSFLMNSQHAKIKNQAIITDETNDSLVAPQEKQVHKSILPNSLGVSERLQRLTFPAVSVKVNGHDQGQNPPLDLETTARFRVETHTQKTIGGNVTKEKPPSLIVPLESQMTKEKKITGKEKENSRMEENAENHIGVTEVLLGRKLQHYTDSYLGFLPWEKKKYFQDLLDEEESLKTQLAYFTDSKNTGRQLKDTFADSLRYVNKILNSKFGFTSRKVPAHMPHMIDRIVMQELQDMFPEEFDKTSFHKVRHSEDMQFAFSYFYYLMSAVQPLNISQVFDEVDTDQSGVLSDREIRTLATRIHELPLSLQDLTGLEHMLINCSKMLPADITQLNNIPPTQESYYDPNLPPVTKSLVTNCKPVTDKIHKAYKDKNKYRFEIMGEEEIAFKMIRTNVSHVVGQLDDIRKNPRKFVCLNDNIDHNHKDAQTVKAVLRDFYESMFPIPSQFELPREYRNRFLHMHELQEWRAYRDKLKFWTHCVLATLIMFTIFSFFAEQLIALKRKIFPRRRIHKEASPNRIRV", "sequence_length": 1256, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "5d02ea965a94ce6e4b51b4ce814e7a7c6237b061dec879a844b672841ba0dcf0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3T906.json", "taxon_id": "9606", "uniprot_accession": "Q3T906", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glcnac-1-reg-pf18440.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18440", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glcnac-1-reg-pf18440.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-gnptab-pf26737.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26737", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-gnptab-pf26737.yaml" } ], "pfam_ids": [ "PF00066", "PF06464", "PF11380", "PF17101", "PF17102", "PF17103", "PF18440", "PF26737" ], "protein_name": "N-acetylglucosamine-1-phosphotransferase subunits alpha/beta", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLVVNSLLKLLQRQTYTCLSHRYGLYLCFGGLVLMIVSAFQFGEVVVEWSRDQYHVLFDSYRDNVAGKSFQTRLCLPMPIDVVYTWVNGTDINLLKDLRAVRQRLEEEQKALRERLGKNGSEITEAPKGRPECLLSHCIMGPVLVLDPALPANITVKELPTLSAAFSSAKELLQVAKPLHPSSSVTALLFHSHTEAEKAHADALKDLLTHSISRGYLTTDKEAPGLVRMHTLAYLSGFPASLKETEQLRVKLPAVVTSKTKKLQLYSEASIALLHLNTAQDFTDLTQQAKKNLTLDGKELTVSSAFLFWDLTAISQSKQDEDVSASRFEDNEELRYSLRSIEKHAPWVRHIFIVTNGQIPSWLNLDNPRVSVVTHQDIFQNQTHLPTFSSPAIETHIHRIPGLSQKFIYLNDDVMFGKDVWPDDFYSHSKGQKVYLTWPVPNCAEGCPGSWIKDGYCDKACNNSACDWDGGDCQGSSRFGGAGGSVIGGGQPWQFAGGLGGLAGMSFCNQGCANSWLADKFCDQACNVLACGFDVGDCGQDNLNQLHRIVLRRNQTLYTLPQGELRPYFSFSGLANRVSEAHVADNQVLRHTSVANKWKTIHLLLLPGHNATQIHYNITFQSTDHHDFIMTFSVSVDTRELPKSNTSTPVRDKEEEPKPTVATPEPEVPFEAVPKEKQGPKVREQTHGDVQVPVLNETLLPDEVKIELKKLNEKLMSGDITIKGFNLTKAMLLEPYKEKDQFTLKHEKDKEEKQKLSPVAQLQNERAAARVKREKGENVDQLKPVAPSLVPVQIDDVTTKAQSRLFNIEKPHMFHLLSNLKGNLSKERDSDSEGHLRERPTGRRLQFYSDSLNRGFLPWEKRKFFQDLMEEVNRLQTELQYTADRTATGRRLQDTFADSLRYVNRLLNAQFGFTSRKVPAHMPHMIDRLIMQELQDTFPQEFDKTSSHRVRHSEDMQFAFSYFYFLMSAVQQLNISEVFDEIDTDHSGVLSDREIRTLATRIHELPLSLQDLTSLEQMLINCSKSLPSNLTHLHAVSPTQEAYYDPSMPPVTKGLVIHCKPITERIHKAFKDQNKYKFEIMGEEEIAFKMIRTNVSHVVGQLDDIRKNPRKFICLNDNIDHIHKDAGTVKAVLRDFYESMFPLPSQFELPREYRNRFLHMTELQEWRIYRDKLKFWTHCVLVTLVVFTVMSFFAEQLVMLKRWLFPRRRVSKDANPERV", "sequence_length": 1219, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cbf7a3517642668df21dcbc6fc6345af71a1f976853de59d358b84d0c552abf4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5RGJ8.json", "taxon_id": "7955", "uniprot_accession": "Q5RGJ8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glcnac-1-reg-pf18440.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18440", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glcnac-1-reg-pf18440.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-gnptab-pf26737.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26737", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-gnptab-pf26737.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/stealth-cr2-pf11380.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11380", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/stealth-cr2-pf11380.yaml" } ], "pfam_ids": [ "PF00066", "PF06464", "PF11380", "PF17101", "PF17102", "PF17103", "PF18440", "PF26737" ], "protein_name": "N-acetylglucosamine-1-phosphotransferase subunits alpha/beta", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLKLLQRQTYTCLSHRYGLYVCFVGVVVTIVSAFQFGEVVLEWSRDQYHVLFDSYRDNIAGKSFQNRLCLPMPIDVVYTWVNGTDLELLKELQQVREHMEEEQRAMRETLGKNTTEPTKKSEKQLECLLTHCIKVPMLVLDPPLPANCTLKDLPTLYPSFHAASDMFNVAKPKNPSTNVSVVVFDTTKDVEDAHAGPFKGGSKQMVWRAYLTTDKEAPGLVLMQGLAFLSGFPPTFKETSQLKTKLPEKLSSKIKLLRLYSEASVALLKLNNPKGFQELNKQTKKNMTIDGKELTISPAYLLWDLSAISQSKQDEDVSASRFEDNEELRYSLRSIERHAPWVRNIFIVTNGQIPSWLNLDNPRVTIVTHQDIFQNLSHLPTFSSPAIESHIHRIEGLSQKFIYLNDDVMFGKDVWPDDFYSHSKGQKVYLTWPVPNCAEGCPGSWIKDGYCDKACNNSACDWDGGDCSGNTAGNRFVAGGGGTGNIGAGQHWQFGGGINTISYCNQGCANSWLADKFCDQACNVLSCGFDAGDCGQDHFHELYKVTLLPNQTHYVVPKGEYLSYFSFANIARRGVEGTYSDNPIIRHASIANKWKTIHLIMHSGMNATTIYFNLTLQNANDEEFKIQIAVEVDTREAPKLNSTTQKAYESLVSPVTPLPQADVPFEDVPKEKRFPKIRRHDVNATGRFQEEVKIPRVNISLLPKEAQVRLSNLDLQLERGDITLKGYNLSKSALLRSFLGNSLDTKIKPQARTDETKGNLEVPQENPSHRRPHGFAGEHRSERWTAPAETVTVKGRDHALNPPPVLETNARLAQPTLGVTVSKENLSPLIVPPESHLPKEEESDRAEGNAVPVKELVPGRRLQQNYPGFLPWEKKKYFQDLLDEEESLKTQLAYFTDSKHTGRQLKDTFADSLRYVNKILNSKFGFTSRKVPAHMPHMIDRIVMQELQDMFPEEFDKTSFHKVRHSEDMQFAFSYFYYLMSAVQPLNISQVFHEVDTDQSGVLSDREIRTLATRIHDLPLSLQDLTGLEHMLINCSKMLPANITQLNNIPPTQEAYYDPNLPPVTKSLVTNCKPVTDKIHKAYKDKNKYRFEIMGEEEIAFKMIRTNVSHVVGQLDDIRKNPRKFVCLNDNIDHNHKDARTVKAVLRDFYESMFPIPSQFELPREYRNRFLHMHELQEWRAYRDKLKFWTHCVLATLIIFTIFSFFAEQIIALKRKIFPRRRIHKEASPDRIRV", "sequence_length": 1235, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "718285f8b316947fed9d44fee76dc5d654a2bac16c28b0c8231592193891c647", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q69ZN6.json", "taxon_id": "10090", "uniprot_accession": "Q69ZN6", "uniprot_release": "2026_03" } ], "pfam_id": "PF11380", "short_name": "Stealth_CR2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11381", "short_name": "DUF3185", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11382", "short_name": "MctB", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11383", "short_name": "DUF3187", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11384", "short_name": "DUF3188", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11385", "short_name": "DUF3189", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11387", "short_name": "DUF2795", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2798-pf11391.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11391", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2798-pf11391.yaml" } ], "pfam_ids": [ "PF11391" ], "protein_name": "Uncharacterized protein YybC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPANKKEGLIFGVMMCFGMVCVMSIYNAIINRAIYDFSLMTVFEMVIGFMIALLLDLLLVGPLAKKIAFRMPFDKTKKIYVILAMSTCMVIGMVLCMSVFGLVTAVLANGLNGDSLFSAYLMIVLKNFILAYPLQLLIMGPLVRGVFMKFVKPKLTAAI", "sequence_length": 159, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f2b988970b59751f74af3f7fcd613cfed2779f9a8753d9b2027468541e685c68", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37501.json", "taxon_id": "224308", "uniprot_accession": "P37501", "uniprot_release": "2026_03" } ], "pfam_id": "PF11391", "short_name": "DUF2798", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "P0AAS5", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/allantoin-degradation-iv-anaerobic.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY0-41", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/allantoin-degradation-iv-anaerobic.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/oxamate-carbamoyltransferase-activity-go0050205.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050205", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/oxamate-carbamoyltransferase-activity-go0050205.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/allh-like-c-terminal-ipr021530.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021530", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/allh-like-c-terminal-ipr021530.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/allh-pf11392.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11392", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/allh-pf11392.yaml" } ], "pfam_ids": [ "PF11392" ], "protein_name": "Oxamate carbamoyltransferase subunit AllH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRPFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP", "sequence_length": 271, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7fd2f5b34aaf2ca37608c3c8e3b3ada386d1e6ce95986bf5491c67976857fcf7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAS5.json", "taxon_id": "83333", "uniprot_accession": "P0AAS5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/allh-pf11392.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11392", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/allh-pf11392.yaml" } ], "pfam_ids": [ "PF11392" ], "protein_name": "Oxamate carbamoyltransferase subunit AllH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRPFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP", "sequence_length": 271, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7fd2f5b34aaf2ca37608c3c8e3b3ada386d1e6ce95986bf5491c67976857fcf7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAS6.json", "taxon_id": "83334", "uniprot_accession": "P0AAS6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/allh-like-c-terminal-ipr021530.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021530", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/allh-like-c-terminal-ipr021530.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/allh-pf11392.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11392", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/allh-pf11392.yaml" } ], "pfam_ids": [ "PF11392", "PF30333" ], "protein_name": "Uncharacterized protein YahE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWALTADADFLAQRGQGQVEQVFARAVNIALPARQQLLTLLCEEYDNAPNSCRLALTHFDDLFRHGDKVQFDDQGITVGQHLHIEMSRCRRWLSPTLQMTAVNFHLIAWLQWHDIIHQHLGENETLFNYRGDNPFYQALNKELHIKRRAVIQAVNDKQNIASAVASMMGLGIGLTPSADDYLTGLALILFIPGHPAEKYKEEFYLGLQRGKNNTTLLSAITLEAALQQRCRENIHRFIHNIIYDIPGNATQAIEKIKHIGSSSGCDMLYGMADGCALSQTYGGNYVS", "sequence_length": 287, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "37b64f5fba19bd30bad002b261b43b347cf9f6a898c4942e9d4f9d0bf4f204e6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P77297.json", "taxon_id": "83333", "uniprot_accession": "P77297", "uniprot_release": "2026_03" } ], "pfam_id": "PF11392", "short_name": "AllH", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11394", "short_name": "Tla3_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Severe acute respiratory syndrome coronavirus 2", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-ns7b-pf11395.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11395", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-ns7b-pf11395.yaml" } ], "pfam_ids": [ "PF11395" ], "protein_name": "ORF7b protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIELSLIDFYLCFLAFLLFLVLIMLIIFWFSLELQDHNETCHA", "sequence_length": 43, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b92aa8e630d2387754e6a17659de14aba024f61d8589c58f900a9481de901e14", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DTD8.json", "taxon_id": "2697049", "uniprot_accession": "P0DTD8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus Rp3/2004", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-ns7b-pf11395.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11395", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-ns7b-pf11395.yaml" } ], "pfam_ids": [ "PF11395" ], "protein_name": "Non-structural protein 7b", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNELTLIDFYLCFLAFLLFLVLIMLIIFWFSLELQDIEEPCNKV", "sequence_length": 44, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f8de916b89c22a403065f7f12b1e93c0bf2f3213d9bef6da399c503ae98995e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3I5I9.json", "taxon_id": "349344", "uniprot_accession": "Q3I5I9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Severe acute respiratory syndrome coronavirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-ns7b-pf11395.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11395", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-ns7b-pf11395.yaml" } ], "pfam_ids": [ "PF11395" ], "protein_name": "Protein non-structural 7b", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNELTLIDFYLCFLAFLLFLVLIMLIIFWFSLEIQDLEEPCTKV", "sequence_length": 44, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "024dd6a334b1ee7eb945c927cf7fe133b2a3fef1cee6b4a0e07d7a065ff0f86f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7TFA1.json", "taxon_id": "694009", "uniprot_accession": "Q7TFA1", "uniprot_release": "2026_03" } ], "pfam_id": "PF11395", "short_name": "bCoV_NS7B", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11396", "short_name": "PepSY_like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, 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"data/traits/sequence/domain/interpro/old-protein-like-toprim-domain-ipr034139.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR034139", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/old-protein-like-toprim-domain-ipr034139.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/old-like-toprim-pf20469.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/old-like-toprim-pf20469.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2813-pf11398.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2813-pf11398.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P75828", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11398", "PF20469" ], "protein_name": "Uncharacterized protein YbjD", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ce035b13dc8faabce7135fd656000da7c617b3dbf89c7a06d9f81ea28c33912c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRMAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD", "sequence_length": 552, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ce035b13dc8faabce7135fd656000da7c617b3dbf89c7a06d9f81ea28c33912c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75828.json", "taxon_id": "83333", "uniprot_accession": "P75828", "uniprot_release": "2026_03" } ], "pfam_id": "PF11398", "short_name": "DUF2813", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { 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"canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3194-pf11419.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11419", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3194-pf11419.yaml" } ], "pfam_ids": [ "PF11419" ], "protein_name": "Uncharacterized protein TK0644", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESEGRRVVHIGLPELTEEQIIEVGELAQRVVIKHVFDALNRSDVKDIEVTTRINRGETLDLELEVYLEVPVFVKVDVERLIDEAVEKAYAAVEKKLREIANEGQDKA", "sequence_length": 108, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9b31ef05423a865c136aaf3984b60c27cd2c8a10505a1b0184151c7e1531834b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5JF83.json", "taxon_id": "69014", "uniprot_accession": "Q5JF83", 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"data/traits/structure/homologous_superfamily/cath/yqbg-like-1-10-3230-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.3230.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yqbg-like-1-10-3230-10.yaml" } ], "pfam_ids": [ "PF11436" ], "protein_name": "Uncharacterized protein YkzL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLIEPTDVASYSVYDRVKNRPEELLAQDIIEAEAEAALITGHRFEDSLYDPLPGKVKLALVKLAQYFALVNSDESASSSYQYEKMGDYSYTVSGEGRIQRPEVYHLLEEFIKPGYVPESSRLKVRSL", "sequence_length": 127, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "17f6a4be8f5c2322a022f5ada38c078a7893eaa70c11271ac30af6a069414925", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0H3Z6.json", "taxon_id": "224308", "uniprot_accession": "C0H3Z6", "uniprot_release": "2026_03" }, { "evidence_scope": 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"path": "data/traits/sequence/homologous_superfamily/interpro/yqbg-like-superfamily-ipr036558.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036558", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yqbg-like-superfamily-ipr036558.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/yqbg-like-1-10-3230-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.3230.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yqbg-like-1-10-3230-10.yaml" } ], "pfam_ids": [ "PF11436" ], 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"MQYFSPEQQYNAWIVSDLVKQIFHKRAGCSPGIHELAVFAEEHFHIDIDFVFSIIMNIGDIEFALTDEIEKKLSGYLSTLLPYVTADMFETSKANAHAFLSRRHGNAAYHLFVSDDAFMRKQ", "sequence_length": 122, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4e68774711959480f6191ea6d89d2accdc7c8baf5326cc54322084fd21b0223b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34626.json", "taxon_id": "224308", "uniprot_accession": "O34626", "uniprot_release": "2026_03" } ], "pfam_id": "PF11486", "short_name": "DUF3212", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain RM11-1a)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": 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"data/traits/structure/homologous_superfamily/cath/ynr034w-a-like-3-40-1840-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.1840.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ynr034w-a-like-3-40-1840-10.yaml" } ], "pfam_ids": [ "PF11503" ], "protein_name": "Protein EGO2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAEKQSDIKGTIAFDTHGNVIESTGVGSQRIEDIGDLSKVTLDAEGFAQVQGDSLLVHLYKRNDITLAVYTSAQ", "sequence_length": 75, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fc020728bbe83570b665a9efb1e1eca34ccff236779177555d1409a97210a912", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3E830.json", "taxon_id": "559292", "uniprot_accession": "Q3E830", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces 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"dd0e851384b17f71d3fb8e20463fea73a56a78ed0a8edf880a101cecca261e30", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAEEQEIVDSLSAEVNPDQKVDMEVETATPKAETGDEKREREETEEEENGGESKKQKVGEEEKSGPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHMVLLDLIKKGHSEPEKKIGGGIKTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQILPLPENMKTPGANGNGHGGGRGGGGGRRGGRGGGRGGRFRR", "sequence_length": 202, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "dd0e851384b17f71d3fb8e20463fea73a56a78ed0a8edf880a101cecca261e30", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8L557.json", "taxon_id": "3702", "uniprot_accession": "Q8L557", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-10-450-40-3-10-450-40.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.450.40", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-10-450-40-3-10-450-40.yaml" } ], "pfam_ids": [ "PF11523" ], "protein_name": "Protein DCL homolog, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLASIPSSSPVASPYFRCRTYIFSFSSSPLCLYFPRGDSTSLRPRVRALRTESDGAKIGNSESYGSELLRRPRIASEESSEEEEEEEEENSEGDEFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRKRRQNR", "sequence_length": 219, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e22c4e9cdf33533cca6ca5ab7d179b48a82e50f7f00b5917152a54c63bb57145", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9C642.json", "taxon_id": "3702", "uniprot_accession": "Q9C642", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3223-pf11523.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11523", 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"MEDDCEELQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTCGSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKKQFQITEDQPERCRYCTLNTGYPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVLTLPPDYWSFLPQDSNIDESCLKPTRRIITHAQVYALLLGIDQRLIKKDIPMFNSLGLTSFPVTPNGYRVTEIVHQFNGARLIFDERTRIYKKLVGFEGNTLELSSRVMECMQYSRLFSETVSSSKDSANPYQKKSDTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVTSFVPTLLDNKEMHVRRGDRLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAIIKASPSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNFIERLLKHDKGKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLREAEQVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSELAVSAFKDAYRDVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSFGFPRELTCAAWNDPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLPGTLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDGPVEDITGEALGSLSACALSEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSEYLSKKKHGFEYGSLEIKNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHFHISEKVLKRKQLSAESVVSSLNEQYKSRNRELKLDIVDLDIQNTNHCSSDDQAMKDDNVCITVTVVEASKHSVLELDAIRLVLIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNGNHLAGELYLKVTMYGDRGKRNCWTALLETCLPIMDMIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEILREHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFTTPVDVYDLLSSTKTMRRTNSAPKSDKATVQPFGLLHSAFLKDIKVLDGKGIPMSLLRTIFTWKNIELLSQSLKRILHSYEINELLNERDEGLVKMVLQLHPNSVEKIGPGVKGIRVAKSKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGTLESGGFSENP", "sequence_length": 1453, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "22d1aba76229c6be3c3b5bb2183bbd15527fdad4fc5d2460fc87a9cc16bd3ddb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LQ02.json", "taxon_id": "3702", "uniprot_accession": "Q9LQ02", "uniprot_release": "2026_03" } ], "pfam_id": "PF11523", "short_name": "DUF3223", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11528", "short_name": "DUF3224", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11533", "short_name": "AtzH-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3226-pf11536.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11536", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3226-pf11536.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/ph0156-like-1-10-3490-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.3490.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ph0156-like-1-10-3490-10.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/ph0156-like-domains-3-40-50-10620.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.50.10620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ph0156-like-domains-3-40-50-10620.yaml" } ], "pfam_ids": [ "PF11536" ], "protein_name": "Uncharacterized protein MJECL12", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRILLLEGITDVAFFIPILKKLYGFSEISCDGIIRAEKMGDISKPICLENEDVKLIVFHSGGKSKQKHALTAMLTAIKMGYLSNIKILGIARDIDQEHDVKNWTKSIIKNAGFEVKEGDKFLIIEDLNLKIAVLGIANYDEDDFNIPSFELKRELEAVITDMAKEISIIEKFKNSLESLSNDAERRLKPKDITHVLAIAKNFDGDSMSGLYRKFIEEQINNKNKVNFLLTLICILPCLTIF", "sequence_length": 241, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "776f95da82207ccb63fef3d685edb5f169cdfbc70cd088480cffec3223f14793", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q60274.json", "taxon_id": "243232", "uniprot_accession": "Q60274", "uniprot_release": "2026_03" } ], "pfam_id": "PF11536", "short_name": "DUF3226", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11537", "short_name": "NitrOD5", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11539", "short_name": "DUF3228", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3231-pf11553.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11553", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3231-pf11553.yaml" } ], "pfam_ids": [ "PF11553" ], "protein_name": "Uncharacterized protein YvdQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGILSGNPQDEPMHYGEVFGLWSYVMAGNKMVGNYQMLLNHVGDDDLKKLLRESIEKCQDEIKQVSTILKENGVALPPASPEPPTADLNDIPPGARFLDPDVAASAAAENAAGLVTCSKMMGQSIREDIAMMFGQFHMSKAATGAKYLRLLKNKGWLIPPPLHLQKHHEA", "sequence_length": 170, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0e9d319d0598b86eaebf5a2aed2c582a50651851c569fe180fe00ad0e3201b6b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O06998.json", "taxon_id": "224308", "uniprot_accession": "O06998", "uniprot_release": "2026_03" } ], "pfam_id": "PF11553", "short_name": "DUF3231", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11554", "short_name": "DUF3232", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11557", "short_name": "Omp_AT", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11572", "short_name": "DUF3234", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11574", "short_name": "Rpf1_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/pyridinol-guanylyltransferase-activity-go0160298.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160298", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/pyridinol-guanylyltransferase-activity-go0160298.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/iron-guanylylpyridinol-cofactor-biosynthetic-process-go0160300.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/iron-guanylylpyridinol-cofactor-biosynthetic-process-go0160300.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hcgb-pf11576.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11576", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hcgb-pf11576.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/b12-dependent-dehydratases-beta-subunit-ipr010254.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/b12-dependent-dehydratases-beta-subunit-ipr010254.yaml" }, { 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"canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/helix-hairpin-bin-1-10-287-470.yaml" } ], "pfam_ids": [ "PF11576" ], "protein_name": "Pyridinol guanylyltransferase HcgB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIVMEEIIKKAFIESINNIRRGDKEEELKKIQEKIVNAKKIVVATNNQKKFKVIRDIMLRVCNAEIKMLDIDTRFADLTRMPALTKGLIALDIEKADLYIARGRLGAPGSGSMLVILDEKGRVLTASLSPSSVIHKEDIEERIKKELIEALSRIGISI", "sequence_length": 158, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e599eb3b23e1b33b1b13d69b11ed7a59aaf1e01fe00025f530068d3d45cb5a7d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57912.json", "taxon_id": "243232", "uniprot_accession": "Q57912", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)", 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"90f8cf354cd911ffa0fecccf73dfd096e1938a3c0f4f6c58ca7e6e56ae6adc1a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6LX55.json", "taxon_id": "267377", "uniprot_accession": "Q6LX55", "uniprot_release": "2026_03" } ], "pfam_id": "PF11576", "short_name": "HcgB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Penicillium herquei", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3237-pf11578.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11578", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3237-pf11578.yaml" } ], "pfam_ids": [ "PF11578" ], "protein_name": "Hydroalkoxylation enzyme phnH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFTYLVSLAAFAVTALGSRPTPPNLEFLFSANLTKGPAYIYDQSDAQIKALQTLTGGIIAGPNFDGTVIGGTALSTRGADGTIRADAHYLIQTSDGANILVTESAAIPYVAVLFDTSSEKYNWLNNVTAWGTPPNLNEINFLEYWQIE", "sequence_length": 149, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f262794921a44c9cda3b9d029742b0fcb6963919e1001fb59e03988a12161bac", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A1S6PUA4.json", "taxon_id": "69774", "uniprot_accession": "A0A1S6PUA4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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}, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-40-160-20-2-40-160-20.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.40.160.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-40-160-20-2-40-160-20.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O07005", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11578" ], "protein_name": "UPF0311 protein YveG", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f5bd026505c9e70c750d96e44faea08590957ff4ff428276cb92dcb722eb4834", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVLVKKPVLKPFASLEIKVDPPITIGETSLGLRXFIPIPIRSGTITGEVKGRILPGGADSQMIRANGRTDLSARYVIETADHELIYIENNGIRQVSKPFRKQAAAGEIIEPEHVYFRTVPTFETGSEVYQWLHDRLFIGSAERTPDYVLLDIYEVQ", "sequence_length": 156, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f5bd026505c9e70c750d96e44faea08590957ff4ff428276cb92dcb722eb4834", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O07005.json", "taxon_id": "224308", "uniprot_accession": "O07005", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Penicillium roqueforti (strain FM164)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3237-pf11578.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11578", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3237-pf11578.yaml" } ], "pfam_ids": [ "PF11578" ], "protein_name": "PR-toxin biosynthesis cluster protein 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPQTKDPDPLPRLVHIGEIQFNLGEVTTGGVTPRGTFIFCPITGGHFTTVFPLPDGFGIHSEAIEGLRAEVLPGGGDYPLIHNNELAELNVSVVAKGLNNDHIFRITSFGICEWNKLIFDMMGQTAAARSTEMGEINAWQVFRINTDSPEYAWLNWACIIGQERLIYEDSRMAKTHMKLFQFLVK", "sequence_length": 186, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "68f5e3b41651aa91f49d577a8689e5bd52e55762f932a987a8c6a55a2110fbe4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/W6Q4S2.json", "taxon_id": "1365484", "uniprot_accession": "W6Q4S2", "uniprot_release": "2026_03" } ], "pfam_id": "PF11578", "short_name": "DUF3237", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11579", "short_name": "DUF3238", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11580", "short_name": "DUF3239", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11582", "short_name": "DUF3240", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11586", "short_name": "DUF3242", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3243-pf11588.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3243-pf11588.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/ymfj-yflh-superfamily-ipr038292.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038292", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/ymfj-yflh-superfamily-ipr038292.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf3243-1-10-760-20.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.760.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf3243-1-10-760-20.yaml" } ], "pfam_ids": [ "PF11588" ], "protein_name": "Uncharacterized protein YmfJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVLENWDSWKNFLGDRLNYAQDKGMSQDTITDLATEIGSYLANEVESKNEQEKVLADLWSVASKDEQHAIANMMVKLVENNSTH", "sequence_length": 85, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fce8f490c70943b94967b5a17ce34cbc12f52788395842858d9de036edfb067a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31768.json", "taxon_id": "224308", "uniprot_accession": "O31768", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3243-pf11588.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3243-pf11588.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/ymfj-yflh-superfamily-ipr038292.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038292", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/ymfj-yflh-superfamily-ipr038292.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf3243-1-10-760-20.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.760.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf3243-1-10-760-20.yaml" } ], "pfam_ids": [ "PF11588" ], "protein_name": "Uncharacterized protein YflH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNRDQEKIQIENEMNAMHGTIKEDILKDFEEFKGYLKKQVNRGKKLGLDDGKLVKSAAILGDYLAKHEEPQNGEEMLLQELWSVADEDEKEHLAQLLVKLVDKQ", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d13702061e8403d26b6dbdbb7a3ec1635f906696dccba976ee6753aaa9b28158", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34306.json", "taxon_id": "224308", "uniprot_accession": "O34306", "uniprot_release": "2026_03" } ], "pfam_id": "PF11588", "short_name": "DUF3243", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11589", "short_name": "DUF3244", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3245-pf11595.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11595", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3245-pf11595.yaml" } ], "pfam_ids": [ "PF11595" ], "protein_name": "Uncharacterized protein PB1E7.01c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEQKVSADVLLNKYQTSISITKNLINSWLGNENTSVSSDEKNDDPPLQARPPRLGLGASRKDQSENSWVTSKNEKLKSLPPALKKKIERQLQKKKEAEKIEGGKNHDNLKRKLNKVGDELNEQQSDTDDDDDDSKARITSRSKRANAQSSGFDIYKKLGKKKR", "sequence_length": 163, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fedb1813fdea417bd01396fe3fd19fdb1310b27fa11a955d4a55286f6f42c6d3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9C108.json", "taxon_id": "284812", "uniprot_accession": "Q9C108", "uniprot_release": "2026_03" } ], "pfam_id": "PF11595", "short_name": "DUF3245", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Candida albicans (strain SC5314 / ATCC MYA-2876)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3246-pf11596.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11596", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3246-pf11596.yaml" } ], "pfam_ids": [ "PF11596" ], "protein_name": "Probable GPI-anchored adhesin-like protein PGA25", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKVTAVSSVLLTVAALTNANEIDKRSFFGDLFSGLTGSKAAAPAAAPAAQPAAQPTTQSPADQPTVQSPVSSDQPSTAQPVAQNNLLLDSSNSTLVVPSSSKSSTTTRSTAGLLDNLLGGSGATSSEASSSEAPSSEAPSSEAPSSEAPSSEAPSSEAPSSSSSEALSSSSTTKRPTAAAKGFFGDLFGTQSSASETDDEDCVEETESPTSAPASAPTTSKVATTTGGGLPNILSDLFPGKSSAPISSAESSPTVASSTTGFPNILSDLFPGKSSVPSSSAETSTTVASNTTTSGGGFPNILSDLFPGKSSVPSSSAEEDDEECEDPTESVTSNSSPTGGISIPTFPITSQSKTSVSSVVSKSTSEDDDDETECETDIPTIIPSGSVLPTTSVLPTIIPTGSGSITILPTKSATSDDDDDETDCETDIPTIVPTESATIIPTGSGSVTIIPTGSGSITVLPTKSATSDDDDDETDCETDIPTIIPTGTATIKPTGSGSITVLPTKSTTTDDDDDETDCETEIPTIHPTVSTTRTFTSDGVPTTQTLTTKLPPTTNQHTETEVVSITYTGGGQTFTTYLTQSGEICDETVTLTITTTCPSTTVAPGGQIYTTTVTVITTHTVYPDDWEDDGYEGEDNAGGSASGSSDDGEWEWYEEDDGECVPTGGSSSGSGTGSWWGSGAGSSGGTTSGSGSGSSSNSGASSGGTWGGSGNDYVCPGEEGYDDEEPDNGGSWWGGSGSGSSSGSSSGVSSGDSGSSSVTGGSSGSWWGGSGNDYVCPGEDGYDDEDDQTPEPECDDEDDSWDDDEECDTQAAKEVVNSVTVAAESVYPSTTAASLTTSWISTQTAQSVTQIENIGGKVSASGLFVVLGLLLI", "sequence_length": 872, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "93cecb7a0c86a11b5881b683b71b17f9bc1cc9e10d69fa0a50f320b0bb8a23af", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q59L86.json", "taxon_id": "237561", "uniprot_accession": "Q59L86", "uniprot_release": "2026_03" } ], "pfam_id": "PF11596", "short_name": "DUF3246", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11607", "short_name": "DUF3247", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11609", "short_name": "DUF3248", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/membrane-lipoprotein-lipid-attachment-site-ipr012640.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/membrane-lipoprotein-lipid-attachment-site-ipr012640.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029051", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4352-pf11611.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11611", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4352-pf11611.yaml" } ], "pfam_ids": [ "PF08139", "PF11611" ], "protein_name": "Uncharacterized protein YdhF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRILSILVFAIMLAGCSSNASTEKQHAGGEKTVKAEPQSTSSQKDSTDDYQPNSQVTDDRTLHKVGQTFSDDKGKAVLKDIKQVNKTYKIGDVELTVKEMKLIHLRPDYSMIDYFHELTHDEEFDFVKVFVDIKNTSTKKVNVAPIALMKTNTGETFDWNKDIYLEELNGELEGGAEKSGNLGFIVNASSGHAHDKAADAEKKTKEIKWIEITTSDVFDHNHKKISDAQKIKIKF", "sequence_length": 236, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d6869d0da78d7ef2107ed620671353e15111693cbddd7707a18785435b0181c0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O05497.json", "taxon_id": "224308", "uniprot_accession": "O05497", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029051", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5105-ipr031343.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031343", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5105-ipr031343.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5105-pf17118.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5105-pf17118.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029050", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.60.40.1240", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml" } ], "pfam_ids": [ "PF11611", "PF17118" ], "protein_name": "Uncharacterized lipoprotein YcdA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFQKKTYAVFLILLLMMFTAACSGSKTSAEKKESETEKSSDIAQVKIKDVSYTLPSKYDKSTSDDQLVLKVNVAVKNTGKDPLNVDSMDFTLYQGDTKMSDTDPEDYSEKLQGSTINADKSVEGNLFFVVDKGKQYELNYTPESYGDKKPKSVTFKIDGKDKKILATADKLQDSAKALSAYVDVLLFGKDNADFEKITGANKNEIVNDFNESAKDGYLSASGLSSTYADSKALDNIVNGIKEGLSKNSSIQAKTTSISKDEAIVEATVKPVDASSLSDRIEDKVKDYYSKNSSASYEEAVKYALQVYPEEFKKLGPASSEKTVEVKMKKNDIDQWQLDMDDYRAAELVEAFIKE", "sequence_length": 354, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "61229bd5efecd27dc40eebb7f6f2f44af4cb3156f001bfca95971b307dc5bd6a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34538.json", "taxon_id": "224308", "uniprot_accession": "O34538", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029051", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4352-pf11611.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11611", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4352-pf11611.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029050", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.60.40.1240", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml" } ], "pfam_ids": [ "PF11611" ], "protein_name": "Uncharacterized lipoprotein YjhA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKVLLLLFVLTIGLALSACSQSSDASEKEKPKEKKSQEELEKELDKELKKGGEPKTKKDDQIHKIGETFKAGHTNFTVNKVDRVQKGEYMNVGGAVNEETKTIKDDEERLIIEVTMENIGEDSISYNFIGFDLRDKNDQSVRPVFSIEEKGRILMGGTLVSGKKVTGVLSYVIPKGEQKHYTLVYNPFLADTNSSNTEERVKDDIDYLVKLD", "sequence_length": 213, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fa156c1bcdde0dc59501b55e422538c2d1b9692f26301880c5d575edcc3b3395", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34725.json", "taxon_id": "224308", "uniprot_accession": "O34725", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029051", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4352-pf11611.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11611", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4352-pf11611.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029050", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.60.40.1240", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml" } ], "pfam_ids": [ "PF11611" ], "protein_name": "Uncharacterized protein YxkC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRHKIITFILAVVVIIIIGNMIGGGGGSEATSKTSSSSKAETEKTYNIGDTVKTEKTEVTVTKVEDRDTVGTQYVEKKASEGGTIVAVQYTIKNVSKKPISSFSIPTVKLVDADGTSYDSDIDASVNYATETKVDNSKILSDLNPNIKVTGVKAFEVDKEAYAKGTWKLKFSNDVIVKIK", "sequence_length": 180, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3ea702753d11ed831671cde2469af19f4473fb87305b5090ca223579771c0387", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P94356.json", "taxon_id": "224308", "uniprot_accession": "P94356", "uniprot_release": "2026_03" } ], "pfam_id": "PF11611", "short_name": "DUF4352", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain YJM789)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/caf4-pf11615.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11615", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/caf4-pf11615.yaml" } ], "pfam_ids": [ "PF00400", "PF11615" ], "protein_name": "CCR4-associated factor 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSGDTRGESSLVAKPIEIILNKLPHAILAQQQFQKYITSPIYRYLSKLLLFREVAWPESTKDTQKGQVGIFSFQNNYADSATTFRILAHLDEQRYPLPNGAAEKNLPSLFEGFKATVSIIQQRLLLDNVDGATNSDKEKYVQLPDINTGFVNKTYSRIDLTHLLEDVETNVENLSINKTLEMDELTRLDSMINELESRKLKILERVKHIDSKSTNLENDVTLIKDRINFIEEYSLEADREQSLRKQMEEERSSEASSFTQNEEAISSLYDVESKDTRLKDFYKMPHEKSHDKNRQMHIISETYSRNSTAFRMTIPHGEHGNSITALDFDTPWGTLCSSSYQDRIVKVWDLNHGIQVGELPGHLATVNCMQIDKKNYNMLITGSKDATLKLWDLNLSRELYLDHSPLKEKTEEIVTPCIHNFELHKDEITALSFDSEALVSGSRDKKIFHWDLTTGKCIQQLDLIFTPTHSDIKMPARSLNNGTCLLGTEAPMIGALQCYNSALATGTKDGLVRLWDLRVGKPVRLLEGHTDGITSLKFDSEKLVTGSMDNSVRIWDLRTSSILDVIAYDLPVSSLDFDGKLITVGANEGGVNVFNMERDEHWMTPEPPHSLDGDELSRRIAIVKYKDGFLINGHNDGDINVWTL", "sequence_length": 645, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2df5d1e4a9826c8f1506731c1a9fe3d09bb6ceebed9f5aab0ef0cfa8a527c64d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A6ZZZ8.json", "taxon_id": "307796", "uniprot_accession": "A6ZZZ8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/caf4-pf11615.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11615", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/caf4-pf11615.yaml" } ], "pfam_ids": [ "PF00400", "PF11615" ], "protein_name": "CCR4-associated factor 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSGDTRGESSLVAKPIEIILNKLPHAILAQQQFQKYITSPIYRYLSKLLLFREVAWPESTKDTQKGQVGIFSFQNNYADSATTFRILAHLDEQRYPLPNGAAEKNLPSLFEGFKATVSIIQQRLLLDNVDGATNSDKEKYVQLPDINTGFVNKTYSRIDLTHLLEDVETNVENLSINKTLEMDELTRLDSMINELESRKLKILERVKHIDSKSTNLENDVTLIKDRINFIEEYNLEADREQSLRKQMEEERSSEASSFTQNEEAISSLCDVESKDTRLKDFYKMPHEKSHDKNRQIISETYSRNTTAFRMTIPHGEHGNSITALDFDTPWGTLCSSSYQDRIVKVWDLNHGIQVGELPGHLATVNCMQIDKKNYNMLITGSKDATLKLWDLNLSREIYLDHSPLKEKTEEIVTPCIHNFELHKDEITALSFDSEALVSGSRDKKIFHWDLTTGKCIQQLDLIFTPTHSDIKMPARSLNNGACLLGTEAPMIGALQCYNSALATGTKDGIVRLWDLRVGKPVRLLEGHTDGITSLKFDSEKLVTGSMDNSVRIWDLRTSSILDVIAYDLPVSSLDFDGKLITVGANEGGVNVFNMERDEHWMTPEPPHSLDGDELSRRIAIVKYKDGFLINGHNDGDINVWTL", "sequence_length": 643, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95dec02f1ecb7f9b8d2a8729b18a8159d8a104d35550b38368016d63db84f2a1", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P36130.json", "taxon_id": "559292", "uniprot_accession": "P36130", "uniprot_release": "2026_03" } ], "pfam_id": "PF11615", "short_name": "Caf4", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-to-membrane-docking-go0022615.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0022615", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-to-membrane-docking-go0022615.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"MVSARYPIEKWSRPQLEDHFHNVVEELNKAQKKVKEQEKQITTFNSRFRRSMLERKSQNEKVVERSKYDDVVKENQILDMKLKAAKQQLLIYTAPSARATTASMMTGRSTFRQPPSTFRQRPPLTAGTTGSIDRPGSAPVARKKSDGGEKLQLATDEKLAIVRLNRTLKNKNDEITELKYTIEKLRQLKSSVNQSSPPTRLSTSSSSKSSSSNNNNDGEGKDSELEEMSEMSDDESGRSTPVIEEKKKPRRKSRKSSHQEPSKNPIPPPRIPDQTEKVLLDKLKVAENDLAMLQEECDLVKKANERLVHQSLSKSTEYGARESIEEKKKIVELEELLKETEKRIKESEHRRREDQKKFEAMRLHYKNKYDAAKKTEKKLSVVAKNSKVEEERIEEEKISHSPPPMTFEPIRKRHSQSEISRMRRADDDLLQKLYKEVADILHSHDVGIAEINTLGASENSLARWQKLYSELYEELEKVRNMLLIQYDINQKQMKEIKLLKDELDRLKTVSAEILSKSREEVEERQKKIFMLEEQIRTIAYSGQQPVKLLANQINIPTPRVNTDLSVKLINVKPSPSLTSKFFFSLEFFDFQLETTPIMDAKQHNMDFTTVYDVLVSNLLIHYLQTNGIVIEMYRPASDCYKLLAAATISLIPLFEDSVLRKFCSEIMLKSVDTGVEMCTLRYEIEVSQPISDSFKKFKKSEMARNMLPLQLENEDTEDTNFDPLTIMVNRVVGLDTFGKDPSTEFCIVDEFLSFSPYFTDFSTSSEIRSKRDCYIPKIDIARNLFATSSISFFLIENIPRQDGVIATLHLPLHPLCKLGGSIKGTFPMLDTDGRPSSVSLDLCLIWKHEIPSFFLKHEPKEPLKEVKDTPILPQPVRRTSKEFVVTPVKEAELHDAEPTSMPPKAPEPTTAPLRRLSTDSSDTSFSHSSKDLFSPPTNPQTYDYEIPAVTPALVDSDGEEEADRIVFDDDDDEIESVSAVSSQRDPEPLEVPERQVENLPSPEDTPRPSDPLKPNGTNESKESTPVTQRSVDKTDDVAPVDPELEPESGPEPEPVVESEPNEVAETEEDRKRELKTEELKSLLGALPPIAKPRNIPVGPIALTEQPEATRQQGSTGRILFTDPLHFSVPPSESSSTSSPRRAEKAPVPLPDYEGHSLIKVRKPLSPTDKDVLEPNMKVSIQLETFELVPGSSLTPLTREETTFFVDWVFLDFTNEQSKSTIFDFPRRPQEMVDIRYTKEYTLTRGQLSLLDQWIRASIKFELTIIKISPGDEEELGFGSLILVPNNTQNKSFVIDVYDRSGIVQAEMTLTLHFSRALIEQLT", 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"sequence_length": 1264, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "980e2673a0074604c1a86478a4a3251f6759bab3084aa7f180680d24cf25b353", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CG73.json", "taxon_id": "10090", "uniprot_accession": "Q8CG73", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rpgr-interacting-protein-1-first-c2-domain-ipr021656.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rpgr-interacting-protein-1-first-c2-domain-ipr021656.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rpgrip1-c-terminal-ipr041091.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041091", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rpgrip1-c-terminal-ipr041091.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c2-c2-1-pf11618.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c2-c2-1-pf11618.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rpgr1-c-pf18111.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18111", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rpgr1-c-pf18111.yaml" } ], "pfam_ids": [ "PF00168", "PF11618", "PF18111" ], "protein_name": "X-linked retinitis pigmentosa GTPase regulator-interacting protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSHLVDPTSGDLPVRDIDAIPLVLPASKGKNMKTQPPLSRMNREELEDSFFRLREDHMLVKELSWKQQDEIKRLRTTLLRLTAAGRDLRVAEEAAPLSETARRGQKAGWRQRLSMHQRPQMHRLQGHFHCVGPASPRRAQPRVQVGHRQLHTAGAPVPEKPKRGPRDRLSYTAPPSFKEHATNENRGEVASKPSELVSGSNSIISFSSVISMAKPIGLCMPNSAHIMASNTMQVEEPPKSPEKMWPKDENFEQRSSLECAQKAAELRASIKEKVELIRLKKLLHERNASLVMTKAQLTEVQEAYETLLQKNQGILSAAHEALLKQVNELRAELKEESKKAVSLKSQLEDVSILQMTLKEFQERVEDLEKERKLLNDNYDKLLESMLDSSDSSSQPHWSNELIAEQLQQQVSQLQDQLDAELEDKRKVLLELSREKAQNEDLKLEVTNILQKHKQEVELLQNAATISQPPDRQSEPATHPAVLQENTQIEPSEPKNQEEKKLSQVLNELQVSHAETTLELEKTRDMLILQRKINVCYQEELEAMMTKADNDNRDHKEKLERLTRLLDLKNNRIKQLEGILRSHDLPTSEQLKDVAYGTRPLSLCLETLPAHGDEDKVDISLLHQGENLFELHIHQAFLTSAALAQAGDTQPTTFCTYSFYDFETHCTPLSVGPQPLYDFTSQYVMETDSLFLHYLQEASARLDIHQAMASEHSTLAAGWICFDRVLETVEKVHGLATLIGAGGEEFGVLEYWMRLRFPIKPSLQACNKRKKAQVYLSTDVLGGRKAQEEEFRSESWEPQNELWIEITKCCGLRSRWLGTQPSPYAVYRFFTFSDHDTAIIPASNNPYFRDQARFPVLVTSDLDHYLRREALSIHVFDDEDLEPGSYLGRARVPLLPLAKNESIKGDFNLTDPAEKPNGSIQVQLDWKFPYIPPESFLKPEAQTKGKDTKDSSKISSEEEKASFPSQDQMASPEVPIEAGQYRSKRKPPHGGERKEKEHQVVSYSRRKHGKRIGVQGKNRMEYLSLNILNGNTPEQVNYTEWKFSETNSFIGDGFKNQHEEEEMTLSHSALKQKEPLHPVNDKESSEQGSEVSEAQTTDSDDVIVPPMSQKYPKADSEKMCIEIVSLAFYPEAEVMSDENIKQVYVEYKFYDLPLSETETPVSLRKPRAGEEIHFHFSKVIDLDPQEQQGRRRFLFDMLNGQDPDQGHLKFTVVSDPLDEEKKECEEVGYAYLQLWQILESGRDILEQELDIVSPEDLATPIGRLKVSLQAAAVLHAIYKEMTEDLFS", "sequence_length": 1286, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ce30ab212020f78c8fa1c17bcf2c543b92cb4d201647e8446c561670d88366a9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96KN7.json", "taxon_id": "9606", "uniprot_accession": "Q96KN7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rpgr-interacting-protein-1-first-c2-domain-ipr021656.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rpgr-interacting-protein-1-first-c2-domain-ipr021656.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rpgrip1-c-terminal-ipr041091.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041091", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rpgrip1-c-terminal-ipr041091.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rpgr1-c-pf18111.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18111", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rpgr1-c-pf18111.yaml" } ], "pfam_ids": [ "PF00168", "PF11618", "PF18111" ], "protein_name": "X-linked retinitis pigmentosa GTPase regulator-interacting protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQHLLEYMPEDLPVRDTDSSPLLKGTSGKNVRAQPHLGRMNQKELNCRRLHLHEEPTLVKEPSPKQRDKNRRRRTNVQRSTTTQPDLRTLAVLQEPERRRRPWVSASPSPSAPPRAPVPGRKAHVQRLCPSTAVGSAQPRVHAGRRLPHIAGPNDRRSHTAPPAFKDYVADKNTRIEITREPSQLTHTMTTDSTHVEEIPRSPEKTSKVEKPEQRSSEECTQKAAELRASIKENVELIRLKKLLQERNTSLAATEAQLTRVQEAYEDLLQKNQGILDTAHNAFLSQVNELKAELSEESKKAVSLRTQLGDVSILQITLKEFQVRVEDLEKERKLLSDSYDRLLENMLDSSHQPLDSSHQPHWSTELTGKQLPPQVCPLLDQMGTALEETKVFRQATNKAAQDGKLKFQDTDILYQHEQEEESLQSTATVASSPEELCELAAQPTLLPQTDQRESSEPKAQDENDLSQVLSELQVSHAETTLELEKTRDMLLLQRKINMCYQEELEATLTKADRENRDHEEKLERLNHLLDFKNSRIKQLEGILRSHGLPTSEQLKDVAYGTLPPSLCLEPLAAHRGDDEVDMSLLHPSENLFELHVHQAFLTPAALTQAGDTQPTTFCTYSFYDFETHCTPLSTGPQPLYDFTSQYVVQADYLLLHYLQGTSVRLDLHQAMASEYHVLATGWISLDKVLGTVERVHGLATLAGAGGEDLGVLEYWMRLCLPLKPSLQACNKRKKAQAYLSVSVLGARKVQSNESRSETWAPQNELRVEITRCCGLRSRRLGRQPSPYVMYRFFTFPDHDTIIIPASSNPYFKDQALFPVLVTSDLDQYLRREALSVYVFDDEDPEPGSYLGRAQVPLLPLAQNKSIKGDFNLTDSGEKSNGSIKVQLDWKSHYLAPEGFQMSEAEKPEGEEKEEEGGEEEVKEEEVEEEEEEEEEEEEVKEEKEEEEEEEREEEEEKEEEKEEEEEEDEKEEEEEEEEEEEEEEEDENKDVLEASFTEEWVPFFSQDQIASTEIPIEAGQYPEKRKPPVIAEKKEREHQVASYSRRKHSKKPGVQDKNRMEYLSCNILNGNTQQMHYTEWKFSGLKKAEDGGLKAQDKREEPPSPRSALRQEHPSHPRNAFSLADQESCEQASEVSETQTTDSDDIIVTPQAQTVPKADSEKMCIEIVSLAFCPEADVMSDETIQQVYVEYKFCDLPLSETETPMSLRKPRAGEEIHFHFSKVIDLDPVEHQSRRQFLFAMLHAQDSDEGRFKFTVVSDPLDEEKKECQDIGYAYLELWQIFQSGKDILEQELEIVSPRNQAIQIGRLKVSLQAAAALHGIYKEMTEDLFS", "sequence_length": 1331, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6cfe8d2996eefb74aa21d0301c6ce59e4c1defde83aac382ea130b9027f55c62", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9EPQ2.json", "taxon_id": "10090", "uniprot_accession": "Q9EPQ2", "uniprot_release": "2026_03" } ], "pfam_id": "PF11618", "short_name": "C2-C2_1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008575.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008575", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf008575.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3251-ipr021658.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021658", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3251-ipr021658.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3251-pf11622.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11622", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3251-pf11622.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/lipoprotein-yaji-like-superfamily-ipr037125.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR037125", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/lipoprotein-yaji-like-superfamily-ipr037125.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/lipoprotein-yaji-like-2-60-40-1620.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.60.40.1620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/lipoprotein-yaji-like-2-60-40-1620.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P46122", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11622" ], "protein_name": "Uncharacterized lipoprotein YajI", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1f776104b76fce0eb858b995604e9ad19f991294035fbe4abc187a59d8d0e576", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNTNVFRLLLLGSLFSLSACVQQSEVRQMKHSVSTLNQEMTQLNQETVKITQQNRLNAKSSSGVYLLPGAKTPARLESQIGTLRMSLVNITPDADGTTLTLRIQGESNDPLPAFSGTVEYGQIQGTIDNFQEINVQNQLINAPASVLAPSDVDIPLQLKGISVDQLGFVRIHDIQPVMQ", "sequence_length": 179, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "1f776104b76fce0eb858b995604e9ad19f991294035fbe4abc187a59d8d0e576", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P46122.json", "taxon_id": "83333", "uniprot_accession": "P46122", "uniprot_release": "2026_03" } ], "pfam_id": "PF11622", "short_name": "DUF3251", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/nad-p-h-dehydrogenase-complex-plastoquinone-go0010598.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010598", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/nad-p-h-dehydrogenase-complex-plastoquinone-go0010598.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ndhs-pf11623.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11623", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ndhs-pf11623.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9T0A4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11623" ], "protein_name": "NAD(P)H-quinone oxidoreductase subunit S, chloroplastic", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "537c4b37622527e3856cf590a636c6ba8f3b3e630a4237f933bbb952dca09044", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MATSSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQVKAMGKFNLWEVMGGRGLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGGFPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQNSPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIEQMQKEEAAP", "sequence_length": 250, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "537c4b37622527e3856cf590a636c6ba8f3b3e630a4237f933bbb952dca09044", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9T0A4.json", "taxon_id": "3702", "uniprot_accession": "Q9T0A4", "uniprot_release": "2026_03" } ], "pfam_id": "PF11623", "short_name": "NdhS", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11625", "short_name": "DUF3253", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Scylla serrata", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/anti-lps-scyg-pf11630.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/anti-lps-scyg-pf11630.yaml" } ], "pfam_ids": [ "PF11630" ], "protein_name": "Antimicrobial protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSSLLLGLTVVLLLGVTVPPCMAGQALNKLMPKIVSAIIYMIGQPNAGVTFLGHQCLVESTRQPDGFYTAKMWCTSWTSDNPIVGEGRSRVELEALKGSIRNFVQTASDYKKFTIEEVEDWIASY", "sequence_length": 126, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bbdc0c24583581d6d1c4e9187705b0e7e80d097577e220d2d6380472f329954f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1YV58.json", "taxon_id": "6761", "uniprot_accession": "A1YV58", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Portunus trituberculatus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/anti-lps-scyg-pf11630.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/anti-lps-scyg-pf11630.yaml" } ], "pfam_ids": [ "PF11630" ], "protein_name": "Anti-lipopolysaccharide factor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKGVVAGLCLALVVMCLYLPQPCEAQYEALVTSILGKLTGLWHNDSVDFMGHICYFRRRPKIRRFKLYHEGKFWCPGWAPFEGRSRTKSRSGSSREATKDFVRKALQNGLVTQQDASLWLNN", "sequence_length": 123, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "20381fccb8d567d05bf39112e748f7bfc0cc29d2882c90abce4d096be14bd254", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/C0KJQ4.json", "taxon_id": "210409", "uniprot_accession": "C0KJQ4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Scylla serrata", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/anti-lps-scyg-pf11630.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/anti-lps-scyg-pf11630.yaml" } ], "pfam_ids": [ "PF11630" ], "protein_name": "Scygonadin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSSLLLGLTVVVLLGVIVPPCMAGQALNKLMPKIVSAIIYMVGQPNAGVTFLGHQCLVESTRQPDGFYTAKMSCASWTHDNPIVGEGRSRVELEALKGSITNFVQTASNYKKFTIDEVEDWIASY", "sequence_length": 126, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1aa82ac019872a027bc6ac821d4ce5302dabed9ca0eccc8d9cce43bd8bcd74f8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5D710.json", "taxon_id": "6761", "uniprot_accession": "Q5D710", "uniprot_release": "2026_03" } ], "pfam_id": "PF11630", "short_name": "Anti-LPS-SCYG", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/lipocalin-similar-to-uncharacterized-bacillus-subtilis-yxef-bacillus-s-cd19434.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd19434", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/lipocalin-similar-to-uncharacterized-bacillus-subtilis-yxef-bacillus-s-cd19434.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3255-pf11631.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11631", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3255-pf11631.yaml" } ], "pfam_ids": [ "PF11631" ], "protein_name": "Uncharacterized protein YxeF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVIPLRNKYGILFLIAVCIMVSGCQQQKEETPFYYGTWDEGRAPGPTDGVKSATVTFTEDEVVETEVMEGRGEVQLPFMAYKVISQSTDGSIEIQYLGPYYPLKSTLKRGENGTLIWEQNGQRKTMTRIESKTGREEKDEKSKS", "sequence_length": 144, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "997e20fe6cdceb5f894abf819ae3f0824b7db4e6765651fe8eefe87d4e5493d3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54945.json", "taxon_id": "224308", "uniprot_accession": "P54945", "uniprot_release": "2026_03" } ], "pfam_id": "PF11631", "short_name": "DUF3255", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11644", "short_name": "DUF3256", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11645", "short_name": "PDDEXK_5", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acidianus filamentous virus 1 (isolate United States/Yellowstone)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3258-pf11646.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11646", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3258-pf11646.yaml" } ], "pfam_ids": [ "PF11646" ], "protein_name": "Uncharacterized protein ORF157", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEMSVVEYEVVSKNLTSKMSHELLFSVKKRWFVKPFRHDRQLGKLHYKLLPGNYIKFGLYVLKNQDYARFEIAWVHVDKDGKIEERTVYSIETYWHIFIDIENDLNCPYVLAKFIEMRPEFHKTAWVEESNYSIAEDDIQMVESIKRYLERKIASD", "sequence_length": 157, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "805509318b5f84b66af33f6668a8d08be2c76b2f21d7babfd066c5e224cdca73", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q70LE6.json", "taxon_id": "654909", "uniprot_accession": "Q70LE6", "uniprot_release": "2026_03" } ], "pfam_id": "PF11646", "short_name": "DUF3258", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fam167-pf11652.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11652", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fam167-pf11652.yaml" } ], "pfam_ids": [ "PF11652" ], "protein_name": "Protein FAM167B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLGPLKFQAVGEKGEEDEEESLDSLKALTAKLQLQTRRPSYLEWTARVQSRAWYRAQARPEPVGPGAICGFDSMDSALEWLRRELQEMRAQDRQLAGQLLRLRARLHRLKVDQVCHLHQELLDEAELEMELESGTGLPLAPPLRHLGLTRMNISARRFTLC", "sequence_length": 162, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8de17f938720dd9a30f300a2339834421b700e0bea000fee5a107912d1e988c4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P17257.json", "taxon_id": "10090", "uniprot_accession": "P17257", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fam167-pf11652.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11652", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fam167-pf11652.yaml" } ], "pfam_ids": [ "PF11652" ], "protein_name": "Protein FAM167A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVPQIHVEEVGAEEGAGAAAPPDDHLRSLKALTEKLRLETRRPSYLEWQARLEEHTWPFPRPAAEPQASLEEGERGGQEPLLPLREAGQHPPSARSASQGARPLSTGKLEGFQSIDEAIAWLRKELTEMRLQDQQLARQLMRLRGDINKLKIEHTCRLHRRMLNDATYELEERDELADLFCDSPLASSFSLSTPLKLIGVTKMNINSRRFSLC", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cd0d5a289e1964b7bee9914281d361a8fe9c908ab46578713945a30c60cdad25", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96KS9.json", "taxon_id": "9606", "uniprot_accession": "Q96KS9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fam167-pf11652.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11652", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fam167-pf11652.yaml" } ], "pfam_ids": [ "PF11652" ], "protein_name": "Protein FAM167B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLGLLKFQAVGEEDEEDEEGESLDSVKALTAKLQLQTRRPSYLEWTAQVQSQAWRRAQAKPGPGGPGDICGFDSMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQACHLHQELLDEAELELELEPGAGLALAPLLRHLGLTRMNISARRFTLC", "sequence_length": 163, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "910d9c64008ebbbea347044e31aad7d5808b946785e0055d348504fad3cda915", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BTA0.json", "taxon_id": "9606", "uniprot_accession": "Q9BTA0", "uniprot_release": "2026_03" } ], "pfam_id": "PF11652", "short_name": "FAM167", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nce101-pf11654.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11654", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nce101-pf11654.yaml" } ], "pfam_ids": [ "PF11654" ], "protein_name": "Non-classical export protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVQYAPFLLGKFSDPLLAIMVGCLSYYVYERKMGRPQGHHLHELIKKRWDDRK", "sequence_length": 53, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "39807d67563e1516dff0c73f7a00044776f90df394d390b4024843a82fd63870", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q02820.json", "taxon_id": "559292", "uniprot_accession": "Q02820", "uniprot_release": "2026_03" } ], "pfam_id": "PF11654", "short_name": "NCE101", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2589-pf11655.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11655", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2589-pf11655.yaml" } ], "pfam_ids": [ "PF11655" ], "protein_name": "Uncharacterized protein AF_0417", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVGANIPAELAALPIESLIGKPLEAAVRAQAFAAMTTARFVQEVGLDDDGNVKTVTFKFKRKELDPETGDVTDVDTTVEAPLLTILPVPFIRIKDMTVHFNFTIKTSAQDKTQHDFASKLTAKAGWGWGSVKLTASYGFKKESRSQVDRSSELDITVNAVQDEMPEGMRTLLSLLKESIAPAGASGGGTG", "sequence_length": 190, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ba9ea00de78703d41d94be193acc2373104e57c1079d9672b5fc73a922ebd304", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O29830.json", "taxon_id": "224325", "uniprot_accession": "O29830", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2589-pf11655.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11655", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2589-pf11655.yaml" } ], "pfam_ids": [ "PF11655" ], "protein_name": "Uncharacterized protein AF_0415", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P32685", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11656" ], "protein_name": "Uncharacterized protein YjbD", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e7bb164052452ed1197a2fe4cd215237c2b3b5ed4f0e6fe8328bc266489f4779", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MALPRITQKEMTEREQRELKTLLDRARIAHGRVLTNSETNSIKKDYIDKLMVEREAEAKKARQLKKKQAYKPDPEASFSWSANTSTRGRR", "sequence_length": 90, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e7bb164052452ed1197a2fe4cd215237c2b3b5ed4f0e6fe8328bc266489f4779", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32685.json", "taxon_id": "83333", "uniprot_accession": "P32685", "uniprot_release": "2026_03" } ], "pfam_id": "PF11656", "short_name": "DUF3811", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/cellulose-biosynthesis-protein-bcsg-tigr03368.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR03368", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/cellulose-biosynthesis-protein-bcsg-tigr03368.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbp-bcsg-pf11658.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11658", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbp-bcsg-pf11658.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P37659", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11658", "PF29399" ], "protein_name": "Cellulose biosynthesis protein BcsG", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7a7b0f4e08242b2f67447a269339f9fc2a3250671e6cdf72d59627999a4e4122", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTQFTQNTAMPSSLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHPLLNLVFAAFLLMPLPRYSLHRLRHWIALPIGFALFWHDTWLPGPESIMSQGSQVAGFSTDYLIDLVTRFINWQMIGAIFVLLVAWLFLSQWIRITVFVVAILLWLNVLTLAGPSFSLWPAGQPTTTVTTTGGNAAATVAATGGAPVVGDMPAQTAPPTTANLNAWLNNFYNAEAKRKSTFPSSLPADAQPFELLVINICSLSWSDIEAAGLMSHPLWSHFDIEFKNFNSATSYSGPAAIRLLRASCGQTSHTNLYQPANNDCYLFDNLSKLGFTQHLMMGHNGQFGGFLKEVRENGGMQSELMDQTNLPVILLGFDGSPVYDDTAVLNRWLDVTEKDKNSRSATFYNTLPLHDGNHYPGVSKTADYKARAQKFFDELDAFFTELEKSGRKVMVVVVPEHGGALKGDRMQVSGLRDIPSPSITDVPVGVKFFGMKAPHQGAPIVIEQPSSFLAISDLVVRVLDGKIFTEDNVDWKKLTSGLPQTAPVSENSNAVVIQYQDKPYVRLNGGDWVPYPQ", "sequence_length": 559, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7a7b0f4e08242b2f67447a269339f9fc2a3250671e6cdf72d59627999a4e4122", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37659.json", "taxon_id": "83333", "uniprot_accession": "P37659", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbp-bcsg-pf11658.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11658", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbp-bcsg-pf11658.yaml" } ], "pfam_ids": [ "PF11658", "PF29399" ], "protein_name": "Cellulose biosynthesis protein BcsG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTQHTQTPSMPSPLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHPLLNLVFMAFLLMPIPKYRLHRLRHWIAIPVGFALFWHDTWLPGPQSIMSQGTQVAEFSSGYLLDLIARFINWQMIGAIFVLLVAWLFLSQWIRVTVFVVAIMVWLNVLTLTGPVFTLWPAGQPTDTVTTTGGNAAATVATAGDKPVIGDMPAQTAPPTTANLNAWLNTFYAAEEKRKTTFPAQLPPDAQPFDLLVINICSLSWSDVEAAGLMSHPLWSHFDILFKHFNSGTSYSGPAAIRLLRASCGQPSHTRLYQPANNECYLFDNLAKLGFTQHLMMDHNGEFGGFLKEVRENGGMQSELMNQSGLPTALLSFDGSPVYDDLAVLNRWLTGEEREANSRSATFFNLLPLHDGNHFPGVSKTADYKIRAQKLFDELDAFFTELEKSGRKVMVVVVPEHGGALKGDRMQISGLRDIPSPSITNVPAGVKFFGMKAPHEGAPIDINQPSSYLAISELVVRAVDGKLFTEDSVNWNKLTSNLPQTAPVSENANAVVIQYQGKPYVRLNGGDWVPYPQ", "sequence_length": 559, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b512a3d2904eff02f17c9400aee539c7740797df2537cb3707b34847f9a9e71e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7CPI7.json", "taxon_id": "99287", "uniprot_accession": "Q7CPI7", "uniprot_release": "2026_03" } ], "pfam_id": "PF11658", "short_name": "CBP_BcsG", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11659", "short_name": "DUF3261", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11660", "short_name": "DUF3262", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11661", "short_name": "DUF2986", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11662", "short_name": "DUF3263", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11666", "short_name": "DUF2933", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3267-pf11667.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11667", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3267-pf11667.yaml" } ], "pfam_ids": [ "PF11667" ], "protein_name": "Uncharacterized membrane protein YhaJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNCWKTINLMKDYGAVRIILTAVCFMILVFISTFLAFELLRPGTSLSDEYVSLFGGLLVVILFVHKVIHVLPIICKKRKIEKKFYILRMRTWKRIPKTTMLISLVSPFLLITPVLFYAALAFPNHAHYFCMISGIHAGYCLPDFLLALKLIKAPKTAFIDQEADGLDILVEK", "sequence_length": 172, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2ad8609e537e091aa303315aed5bb5291d315ddcdd94c7cbbcae5e75c4d1c13a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O07518.json", "taxon_id": "224308", "uniprot_accession": "O07518", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrococcus woesei", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3267-pf11667.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11667", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3267-pf11667.yaml" } ], "pfam_ids": [ "PF11667" ], "protein_name": "Uncharacterized 24.7 kDa protein in gap 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKDSMFLYEFDLCRYSKDLTALSLGLLIGASLTVRWVSLSMSSSRDLLHYLVLPLILVVILHEGLHALTAKLSGAKTSLGVLTKYGIILAVYVGINTPLPVKKIRYITIAPIIISIVAFFFSWVTYSPFWAILYIFNTTGIVGDLIVFLVLSKMPSDAIVVDEGTIMKSNAEFPEPYPSWFSKLIIGLAVLVFLYILTNIRIEFEVVGTLPNQTMPVNSHFE", "sequence_length": 222, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb9e2eed5cb77b5745d37b769b57dca2030124aa92f7ca358a6b33ee50999511", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P20296.json", "taxon_id": "2262", "uniprot_accession": "P20296", "uniprot_release": "2026_03" } ], "pfam_id": "PF11667", "short_name": "DUF3267", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, 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[], "pfam_id": "PF11677", "short_name": "DUF3273", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11678", "short_name": "Tle3_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11679", "short_name": "DUF3275", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3276-pf11680.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11680", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3276-pf11680.yaml" } ], "pfam_ids": [ "PF11680" ], "protein_name": "Transcriptional/translational repressor BpuR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGERGEVYSEKLFTESERTYFFNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENINEFESNLLKAIAVIKQKVSTGSVGSSARHNKGYGEYGERSKLDDSRFDKKSHLSGGRFKKKDY", "sequence_length": 122, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7e3a823ea034bb6add29aa82bff66de20f3eb806319d9c2c53fb22276c641f0f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O51076.json", "taxon_id": "224326", "uniprot_accession": "O51076", "uniprot_release": "2026_03" } ], "pfam_id": "PF11680", "short_name": "DUF3276", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/tongue-morphogenesis-go0043587.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0043587", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/tongue-morphogenesis-go0043587.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/wd40-repeat-containing-domain-superfamily-ipr036322.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036322", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/wd40-repeat-containing-domain-superfamily-ipr036322.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/frtz-pf11768.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11768", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/frtz-pf11768.yaml" } ], "pfam_ids": [ "PF11768" ], "protein_name": "WD repeat-containing and planar cell polarity effector protein fritz homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFCLTELHLWSLKSTLHIADRDIGVYQYYDKKDPSVSATEHGNLEEKQRLAESRDYPWTLKNRRPEKLRDSLKELEELMQSSPCVLSKWKSKYICQLLFGSGVLVSLSLSGPQLEKVVIDRSLVGKLISDTISDALLTDSFIILSFLAQNKLCFIQFTKKMDSLDGNKRLEKLSALDLKISYYDIPGPANRTIDRHLAVNSTQDLVVCWWPLVSDDVWPWTPVSSEKDRANMLLLGFTQGGLEVLSFVRTEWSPLDVHFGTKQPYQVFTVECSVSVDKEPMADSCIYESVRNKLHCVSVTRIPLRSKAISCCRNSTEDKLIVGCEDSSVILYEAHRGVTLLAQAELRPSLISCHPSGAILLVGSNQGELQIFDIALSPINIQLLAEDYSPKETLQFKKFFDVSSSLVQMQWMAPPVVFQKPKRGEICDLLFLRFNKGPLGVLLFKLGILTRGQLGLVDLILQYIHYSEVYEAISILRSMDWDTLGQQCLIGMGTIVNHLLRQRLTPEREAQLEASLGTFYAPTRPLLDTTILEYREPVSKYARRLFHHLLRYKRFEKAFLLAVDIGARDLFMDIHYLALDMGELALAEVARRRAHDIDVESVSSGVELLGPLDRRDMLNEGFASSALMPEGENKFPGLLPSIGSTHMQTLQQKIPNGPSSRWAIERRTEEEEEEEEEEEEELCTDSSGATTWNAEGELKEDQRKQDIGDVGSLRMVHFGLV", "sequence_length": 722, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ad0fa3e4d49d109b7caae7f775321f4fe5a3191d84a153dd1ace6fcb6dc27aab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C456.json", "taxon_id": "10090", "uniprot_accession": "Q8C456", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/axonemal-basal-plate-go0097541.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097541", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/axonemal-basal-plate-go0097541.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/imaginal-disc-derived-wing-hair-site-selection-go0035320.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0035320", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/imaginal-disc-derived-wing-hair-site-selection-go0035320.yaml" } ], "pfam_ids": [ "PF11768" ], "protein_name": "WD repeat-containing and planar cell polarity effector protein fritz", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLSETHFWTTLREDVVRIKSQDLGAFRYLRQRDKEQEQQDLACLAKRDYTERRNGLAVLKNSGRKSTGRLKDNLKKLEDLLRQHRIIHSEWQDAAQVLLLFSHGLIAHICVDIYTGDILRMVFEKYLVGKLASEVITDAFFTRSHIVLAYNTNQLTVVHLQRPNARSQGPEKIANMDPRIFHVIIPGATERKLSRHLTVNASFDLFVVWTQSSQNEVYPWRPTIRDQDRANIHVFKIKGLQLESIAYCWSENDPLCVDFLRSSESQIITLEQKVSRKGDISAEICSYELAAGKMQRTAITSIPMGAQICSFAFSPDQEKLFLGSVDRNICLHDLVQQSTKYANQIEIVPNQCAWHCDSAMLCVANERSVLQCFDLALATIGHQLVSENVTPSSLLDLSHYFVAQPTLLSVAFSRKPDLSTFKHTYAQTDCLLLLVYEQGPLACMRIFGGTGMRGDIHNSGLTADVIADKYLRLQQPDRAVNVLAALNWETYGAMCLITLHKIANYVFFGGDQRRPRIELMARALKTFAHTLSEETKDEFSDQVYDLKRRFCFYLLRKNLFAEAFEIAQDVADYDIFMDLYNLTKCISSLSEFAQVAFSQAAAIIHEEDRANGNLSLTCDLRSESACSLSTCSDMLRGQGAGTAPETGLGASQPQSQQVLKNYVPPLPSFKSKVFNAEMIKINIPKPELRPPLPKVSIAPPTSSLASLTLKSNSSLQQAPAKSLHPNGNLWSQDVPDQTVGLPMASSPLPRLPPSNIPDQSAQLGQFSTMPASPPPTGSYQPKFYQHPLVSGNIPAMLPSLTSEDYQKRLLQKKPTASILSNPANPAPTNGEAPATPAKSQTAEKNKVKFSDTIQVAVVPEIPRKEKPMPPKRNGYSRPAARHLTNPKKELADSLPLCHPNDEYLKDFNPITTNVTKPPIRRREEEPKSSSKGGNSSSSSSSIKVVHFGVV", "sequence_length": 951, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7e0e4baa171f30510a410b3ed9b4cbe43edfda956081aa5942bc3c3b5a15a817", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VQ36.json", "taxon_id": "7227", "uniprot_accession": "Q9VQ36", "uniprot_release": "2026_03" } ], "pfam_id": "PF11768", "short_name": "Frtz", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3313-pf11769.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3313-pf11769.yaml" } ], "pfam_ids": [ "PF11769" ], "protein_name": "Uncharacterized lipoprotein YdcL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRTTSFAKVAALCGLLALSGCASKITQPDKYSGFLNNYSDLKETTSATGKPVLRWVDPSFDQSKYDSIVWNPITYYPVPKPSTQVGQKVLDKILNYTNTEMKEAIAQRKPLVTTAGPRSLIFRGAITGVDTSKEGLQFYEVVPVALVVAGTQMATGHRTMDTRLYFEGELIDAATNKPVIKVVRQGEGKDLNNESTPMAFENIKQVIDDMATDATMFDVNKK", "sequence_length": 222, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "53bb4aa6d114101a2ee850a56f90237afc537d4052225904a37940cd0b7dbc71", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64451.json", "taxon_id": "83333", "uniprot_accession": "P64451", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3313-pf11769.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3313-pf11769.yaml" } ], "pfam_ids": [ "PF11769" ], "protein_name": "Uncharacterized lipoprotein YdcL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRTTSFAKVAALCGLLALSGCASKITQPDKYSGFLNNYSDLKETTSATGKPVLRWVDPSFDQSKYDSIVWNPITYYPVPKPSTQVGQKVLDKILNYTNTEMKEAIAQRKPLVTTAGPRSLIFRGAITGVDTSKEGLQFYEVVPVALVVAGTQMATGHRTMDTRLYFEGELIDAATNKPVIKVVRQGEGKDLNNESTPMAFENIKQVIDDMATDATMFDVNKK", "sequence_length": 222, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "53bb4aa6d114101a2ee850a56f90237afc537d4052225904a37940cd0b7dbc71", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64452.json", "taxon_id": "83334", "uniprot_accession": "P64452", "uniprot_release": "2026_03" } ], "pfam_id": "PF11769", "short_name": "DUF3313", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3314-pf11771.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3314-pf11771.yaml" } ], "pfam_ids": [ "PF11771" ], "protein_name": "UPF0575 protein C19orf67 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANTEHDELASLLRETNEAEQSLTDQEAITETVEENTTIASSFGDGTFLWDEDPLSGYTPSCEDTRIMEDKISRIEKQLQYLLSKADEFQTQLVWSRNCVQDYGFGNIIPMFLETCQPFFSLLESTARNSNPFCPPQSSNIRMQLLQFSQQLCSRLEQLVLLFASFSFCSLEESDPLSVSHFSIGQCQIDNMKVSIFRYCCPTPFLASSLTGLYKRMRWNVEREIEGEGDGKTYDSAEFYFLCCEDVIEAADDQNEDRSSEGESTETDSESKVSRIWSIGRWVQTYPDPNTEDIIDWVLCSLPCGQYKQLLCLGNEEPSSCTATDCLLGALLSQETHGTFSIIK", "sequence_length": 344, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6e8ca751e74b3ba3dafaa9ba000bda2be1d59d1ec4ef50c7c1a81d59d7aa90ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A3KNM4.json", "taxon_id": "7955", "uniprot_accession": "A3KNM4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3314-pf11771.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3314-pf11771.yaml" } ], "pfam_ids": [ "PF11771" ], "protein_name": "UPF0575 protein C19orf67", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATEQWFEGSLPLDPGETPPPDALEPGTPPCGDPSRSTPPGRPGNPSEPDPEDAEGRLAEARASTSSPKPLVPRPGPAPPRLSLDTLFSPITQQLRYLLKKADDFQSYLLYSRDQVQKEQLAKAMPTFLQMCEPYFLYLEAAARSIPPIYGPLQELVRKGLLEISQQLTLRLEQLVLMYASFGFVDLEEMNPLSISCFFCGRFSISLSHEVSIFRYCAPTAYTASRFPRYLYKKMRWHLEATPEAPGRGQDSLVDYYFLCYRDTWEDTGQSPANSCPQIQKLWSIGRWVPLGPAEDDLYSWILCPQPLGDYQQLLTIGFEEPTPTLATDLLVQILTGQAGQARPPSAAGPAGWAAQGS", "sequence_length": 358, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d3d16fa10ea038ef13ef50ce26d41facf80e01a7fe8e223c04b8a718f3ae6639", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/A6NJJ6.json", "taxon_id": "9606", "uniprot_accession": "A6NJJ6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3314-pf11771.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3314-pf11771.yaml" } ], "pfam_ids": [ "PF11771" ], "protein_name": "UPF0575 protein C19orf67 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMEAPASTSSREPLAAELGPAPARLPLDSMFSPITDQLRYLLRKADDFQSYLLYSRDRVQKEQLAKAMPTFLTMCEPYFLYLEAAARSVPPIYGALQELVRKGLLEISQQLTLRLEQLVLMYASFGFVDLEETNPLSISCFFCGRFSISPSHDVSIFRYCTPAAYTASHFPRYLYKKMRWNLETTTEASSQGADSHVDYYFLCYRDTWEDAGQGPANSCPQIQKLWSIGRWMPLGPAEDDLDSWILCPQPPGDYQQLLTIGFEEPSHVLATDLLVQILLGQAGPARPPSAAGPAAWAAPAS", "sequence_length": 301, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "630de4f41f275629b41866303f2d550ad7c6126c3303f42e3951131e4a430f31", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CF25.json", "taxon_id": "10090", "uniprot_accession": "Q8CF25", "uniprot_release": "2026_03" } ], "pfam_id": "PF11771", "short_name": "DUF3314", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/response-to-cobalt-ion-go0032025.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/response-to-cobalt-ion-go0032025.yaml" }, { "cited_uniprot_accession": 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"path": "data/traits/sequence/family/pfam/duf3336-pf11815.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11815", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3336-pf11815.yaml" } ], "pfam_ids": [ "PF01734", "PF11815" ], "protein_name": "Triacylglycerol lipase 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKETAQEYKVSAVIPTLLKNWILRVVYATLDHIPPFVWEILHVITDIYFFWVQKLINYVRPHSRVIYYNAIKKLDECDTYQMWCQQASVVDEITGANLWRRNFFSRRYDFNSVIEQYSILENMLREEKYDVVKEKFSTTGPCMLRNFAGIGDKKLFTKSLMGTKLLIEQYLTRILEGLDILNNQTLTPTSFFQRCKLSLGTTALILQGGSLFGLFHLGVIRGLLLQDLMPNIISGSSMGACVASLFGCLSNEQLKQLLTDDNLLNIIKNDVDLLKSCGYGNLEQHLNLGTLIQNLIHHGYSQDVYLFIRFVMKYIVKEKTFEEVYQITGKVFNIVIHPTDKSCPNLLNYVTTPNVLIKSAIECSLGSGVISEDTSLLCKNLENEIEPFLNINKNKQVKFLTPENANNPSITESPYTRLTELFNVNNFIVSLARPYLAPLVVNDLKHEIKTSKYYYYKHYPNMPPINANTVRKTQRSSSQSPIKAGTVEDLEPEPLMSPVPPSSAVNDSAEYIIPELGIPQLNFTEMEPLAFKFKYHLERKLKNIATMEFRHRMEVLDNLGLLCSLIKRLIIDEKTPRSATEIAVVPRMKSLSLTRIIEGQLNNIPYWIKSGERSTWPALALIKTRCAVEFKLDDIIRARRSR", "sequence_length": 642, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea6ae1143b245ff7d83d166c8aadc97691e453e2e7b0f5b0b3caf2248fea9763", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P40308.json", "taxon_id": "559292", "uniprot_accession": "P40308", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/triacylglycerol-lipase-4-and-5-tgl4-and-tgl5-are-triacylglycerol-lipas-cd07230.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd07230", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/triacylglycerol-lipase-4-and-5-tgl4-and-tgl5-are-triacylglycerol-lipas-cd07230.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/triacylglycerol-lipase-n-terminal-ipr021771.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/triacylglycerol-lipase-n-terminal-ipr021771.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3336-pf11815.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11815", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3336-pf11815.yaml" } ], "pfam_ids": [ "PF01734", "PF11815" ], "protein_name": "Triacylglycerol lipase 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNTLPVTEFLLSKYYELSNTPATDSSSLFKWLYHKTLSRKQLLISDLSSQKKHAISYDQWNDIASRLDDLTGLSEWKTIDESSLYNYKLLQDLTIRMRHLRTTHDYHRLLYLIRTKWVRNLGNMNNVNLYRHSHTGTKQIIHDYLEESQAVLTALIHQSNMNDHYLLGILQQTRRNIGRTALVLSGGSTFGLFHIGVLAALFESDLMPKVISGSSAGAIVASIFCVHTTQEIPSLLTNVLNMEFNIFNDDNSKSPNENLLIKISRFCQNGTWFNNQPLINTMLSFLGNLTFREAYNKTGKILNITVSPASIYEQPKLLNNLTAPNVLIWSAVCASCSLPGVFPSTPLFEKDPHTGKIKEWGATNLHLSNMKFMDGSVDNDMPISRLSEMFNVDHIIACQVNIHVFPLLKFSNTCVGGEIEKEITARFRNQVTKIFKFFSDETIHFLDILKELEFHPYLMTKLKHLFLQQYSGNVTILPDLSMVGQFHEVLKNPSQLFLLHQTTLGARATWPKISMIQNNCGQEFALDKAITFLKEKIIISSSIKNPLQFYQPRFSEQIKSLSIMDADLPGVDLEESSSNSLSIIKSPNKTAAPGRFPLQPLPSPSSTFNKRKMDMLSPSPSPSTSPQRSKSSFTQQGTRQKANSLSFAIGASSLRLKKSPLKVPSRPQFKKRSSYYNQNMSAEMRKNRKKSGTISSYDVQTNSEDFPIPAIENGSFDNTLFNPSRFPMDAMSAATNDNFMNNSDIFQN", "sequence_length": 749, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea36b2fa48bc8064aefcd86a95ac40ea7b5b251197d3ffdfabf97635bb1e505a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12043.json", "taxon_id": "559292", "uniprot_accession": "Q12043", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/sugar-dependent-1-like-lipase-sugar-dependent-1-sdp1-lipase-has-a-pata-cd07231.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd07231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/sugar-dependent-1-like-lipase-sugar-dependent-1-sdp1-lipase-has-a-pata-cd07231.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/triacylglycerol-lipase-n-terminal-ipr021771.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/triacylglycerol-lipase-n-terminal-ipr021771.yaml" } ], "pfam_ids": [ "PF01734", "PF11815" ], "protein_name": "Triacylglycerol lipase SDP1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDISNEASVDPFSIGPSSIMGRTIAFRVLFCRSMSQLRRDLFRFLLHWFLRFKLTVSPFVSWFHPRNPQGILAVVTIIAFVLKRYTNVKIKAEMAYRRKFWRNMMRTALTYEEWAHAAKMLEKETPKMNESDLYDEELVKNKLQELRHRRQEGSLRDIMFCMRADLVRNLGNMCNSELHKGRLQVPRHIKEYIDEVSTQLRMVCNSDSEELSLEEKLSFMHETRHAFGRTALLLSGGASLGAFHVGVVRTLVEHKLLPRIIAGSSVGSIICAVVASRSWPELQSFFENSLHSLQFFDQLGGVFSIVKRVMTQGALHDIRQLQCMLRNLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFNLDPEVGTKSSSGRRWRDGSLEVDLPMMQLKELFNVNHFIVSQANPHIAPLLRLKDLVRAYGGRFAAKLAHLVEMEVKHRCNQVLELGFPLGGLAKLFAQEWEGDVTVVMPATLAQYSKIIQNPTHVELQKAANQGRRCTWEKLSAIKSNCGIELALDDSVAILNHMRRLKKSAERAATATSSSHHGLASTTRFNASRRIPSWNVLARENSTGSLDDLVTDNNLHASSGRNLSDSETESVELSSWTRTGGPLMRTASANKFIDFVQSLDIDIALVRGFSSSPNSPAVPPGGSFTPSPRSIAAHSDIESNSNSNNLGTSTSSITVTEGDLLQPERTSNGFVLNVVKRENLGMPSIGNQNTELPESVQLDIPEKEMDCSSVSEHEEDDNDNEEEHNGSSLVTVSSEDSGLQEPVSGSVIDA", "sequence_length": 825, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "805fb88390bb8dba86ea7578f70b52100405eeeb3b61e7f521be1d3841eb2c48", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LZA6.json", "taxon_id": "3702", "uniprot_accession": "Q9LZA6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/sugar-dependent-1-like-lipase-sugar-dependent-1-sdp1-lipase-has-a-pata-cd07231.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd07231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/sugar-dependent-1-like-lipase-sugar-dependent-1-sdp1-lipase-has-a-pata-cd07231.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/triacylglycerol-lipase-n-terminal-ipr021771.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/triacylglycerol-lipase-n-terminal-ipr021771.yaml" } ], "pfam_ids": [ "PF01734", "PF11815" ], "protein_name": "Triacylglycerol lipase SDP1L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDISNEAGVDAFSIIGPTTIIGRTIAVRILFCNSVSIFRHKVFRILKFFLRGGRVLLSPFVSLLHPRNPQGILVMVTTMAFLLNRYTSLKAKAEMAYRRKFWRNMMRAALTYEEWSHAAKMLDKETPKVNETDLFDVELVSNKLDELKHRRHEGSLRDIIFCMRADLVRNLGNMCNPELHKGRLHVPRLIKEYIDEVSTQLRMVCDMDTEELSLEEKLSFMHETRHAYGRTALLLSGGASLGAFHLGVVKTLVEHKLLPRIIAGSSVGSVMCAVVGTRSWPELQSFFEGSWHALQFFDQMGGIFTTVKRVMTQGAVHEIRHLQWKLRNLTNNLTFQEAYDITGRILGITVCSLRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRTGEIVPYHPPFNLDPEEGSASVRRWRDGSLEMDLPMIQLKELFNVNHFIVSQANPHIAPFLRMKEFVRACGGRFAAKLAQLAEMEVKHRCNQVLELGLPLREVASLFAQEWEGDVTIVMPATFSQYLKIIQNPSNVEIQKAANQGRRCTWEKLAVIKANFGIELALDECVTVLNHMRRLKRSAERAAAFSAISSSPPSKHLLAGTNRFNASKRIPSWNCIARQNSSGSVDDDVLAEASRLYQHIVVGSGRNSNRTSNLSHTYDAGSECDSPEAEDWTRSGGPLMRTNSAQMFTDYVQNLDAVDPEQIRASENDSIVAASSSSHSITVTEGDYLQTGRTHNGFVLNLVRGENLRMNSEPEDSQNESEIPETPESVQLDSPEKDIIDGESSASEDGDAQANLIHDHE", "sequence_length": 801, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2cc528117646d55bd54cfbec85af8e5849097b3bc883cddd80af7d9ba078e52b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M1I6.json", "taxon_id": "3702", "uniprot_accession": "Q9M1I6", "uniprot_release": "2026_03" } ], "pfam_id": "PF11815", "short_name": "DUF3336", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ubl-wdr48-bun107-pf11816.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11816", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ubl-wdr48-bun107-pf11816.yaml" } ], "pfam_ids": [ "PF00400", "PF11816" ], "protein_name": "WD repeat-containing protein 48 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLTHKTCQARKKMQVSFVIRDAEEKQHRNGVNALQLDANNGKLYSAGRDAIIRVWNTRTDSSEKYIQSMEHHNDWVNDIVLCCNGRNLISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRRMKLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNLGQQRCVQTIHVHKEGVWSLLMSENFQYIISGSRDRNIIVTEMRNPSNKTLVCEEQAPVLSLGYNIDKTGVWATTWNSDIRCWKLPMYDRCTLNSSGGMDAQWTQGGTEVACIKGGAAIKECAVLNDKRYIITKDSQDQVVVYDVLRVVKKEQLGAVDFEAEVKKRNKQVYIPNWFTVDLKTGMPTIVLGQEEVDCFSAWVSIEAGLPECVDPTTEIKINYGKLLLEALLEYWTPPHSIPPNEMEPDMHGNGYFQVPKHTPVIFSEVGGRTVCRLLVRDAAGDSESTLLHETAPQWVTDVVIEKNIPKFLKIPFFLQPHPQMTKPERTKKDRLVANEFIQCRKVCEHVLEKVLNAETTPSGGNANNSLQNSQSDANSEGSQLPAEERIELWCNDVVVDPNMDLRTVRHFIWKQSTDLTFQYKTKQNFNYDGK", "sequence_length": 668, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f4bbb1e594327030e8e4f9717fc51037137d1f60d60cc6c7b5a12169ed275bfb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1LZ08.json", "taxon_id": "7227", "uniprot_accession": "Q1LZ08", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ubl-wdr48-bun107-pf11816.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11816", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ubl-wdr48-bun107-pf11816.yaml" } ], "pfam_ids": [ "PF00400", "PF11816" ], "protein_name": "WD repeat-containing protein 48 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSCVNTSQTGPKKKISFIIRDEHEYSNRSAVSALQYDAQNGRLFTGGSDTIIRTWSVPHHKDAFSARGGVRSPGKNSPVQYQGSLEQHTDWVNDMILCGHGKILISASNDTTVKVWNIERDNKHGFIDCIRTHKDYVSCLAYAPIVEKAVSASFDHNIFVYDINANFKTVNNLIGCKDSIYSLATTPNLSLVLGAGTEKCIRLFDPRTNEKIMKLRGHTDNVRALVVNDDGTRALSAGSDATIRLWDIGQQRCIATCIAHEEGVWTLQVDSSFTTVYSAGKDKMVVKTPLYDFTKSQLLFKEEAPVKKLLLSEKDNPVSLWVGTWKSDIKRWSIRPSAQLSIGGDEDGPSTSNANHSVSASSSPPVTFKYIRVKDQKGQQSTPELVIPGAPAIKKHAMLSDKRHVLTRDSDGNVALYDVLAARKIKDYGKRIFEEVVDENSRQVYIPSWFVVDSKSGMLQITLDELDALSSWLSSKDAGFDDNDRETKLNYGGMMLRSLFERWPPCKMTNVDAADADDVQKATLNFISLPEHTPLIICEGNGRPLYRLLVGDAGKEFEANELAQIAPMWVIDAIERNQLPKFNKMPFYLLPHPSTNPKQPKKDRLSATEMLQVKKVMEHVYEKILSTNDDITVGSIPLNQIHTKMEMYCNDQRLEPDMDLRTVKHLYWKQSGELLLHYKPVK", "sequence_length": 683, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6e0fdae14b21346b5b26a6321f82fa80f955c53fccf357a65ac284b8b4b062e6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q20059.json", "taxon_id": "6239", "uniprot_accession": "Q20059", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ubl-wdr48-bun107-pf11816.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11816", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ubl-wdr48-bun107-pf11816.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8BH57", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00400", "PF11816" ], "protein_name": "WD repeat-containing protein 48", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "530fe5634eba8faf39d4eb7d5c416b27e187ca69d7faab6a390d6fa91f36065c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDVVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLHRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKSTVNKWTLKGIHNFRASGDYDNDCTNPITPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKVDFEDEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYWPRTHVTPMDEEENEVNHVSGGQESRVQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETEAMLLNETVPQWVIDITVDKNMPKFNKIPFYLQPHASSGAKTLKKDRLSASDMLQVRKVMEHVYEKIINLDNESQTTSSSNNEKPEQEKEEDIAVLAEEKIELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYRQKST", "sequence_length": 676, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "530fe5634eba8faf39d4eb7d5c416b27e187ca69d7faab6a390d6fa91f36065c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BH57.json", "taxon_id": "10090", "uniprot_accession": "Q8BH57", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ubl-wdr48-bun107-pf11816.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11816", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ubl-wdr48-bun107-pf11816.yaml" } ], "pfam_ids": [ "PF00400", "PF11816" ], "protein_name": "WD repeat-containing protein 48", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKSTVNKWTLKGIHNFRASGDYDNDCTNPITPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKVDFEDEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYWPRTHVNPMDEEENEVNHVNGEQENRVQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESMLLNETVPQWVIDITVDKNMPKFNKIPFYLQPHASSGAKTLKKDRLSASDMLQVRKVMEHVYEKIINLDNESQTTSSSNNEKPGEQEKEEDIAVLAEEKIELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYRQKST", "sequence_length": 677, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c87774f0852fc0b856d60e1c37650fabba0ca10facc5cf87ab2501f3e182e3b2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TAF3.json", "taxon_id": "9606", "uniprot_accession": "Q8TAF3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/ubiquitin-like-ubl-domain-found-in-wd-repeat-containing-protein-48-wdr-cd17041.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd17041", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/ubiquitin-like-ubl-domain-found-in-wd-repeat-containing-protein-48-wdr-cd17041.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/wdr48-bun107-ubiquitin-like-domain-ipr021772.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021772", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/wdr48-bun107-ubiquitin-like-domain-ipr021772.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ubl-wdr48-bun107-pf11816.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11816", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ubl-wdr48-bun107-pf11816.yaml" } ], "pfam_ids": [ "PF00400", "PF11816" ], "protein_name": "DUB-associated factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNQLTVSYGLISPDYCTSQDAHILPITKILYPDIPGKNYFLTSGRDGSIILHKNTQLSNEPETAATTIKNDAIRMQVHSDWASDLIHVNMKNSDPSAGDTFISVSHDFSIVLISVNAQLTTWDKKIIGDHDDYIKCIVPIHYEMSNDYELEEQEGGPDNVHDGINNGIVVDEQNNFLFVTGGLDRKIKLWCLSSGPEKMATLLHTFDNAQSNDTGSIYSMSPIIPKYSFDDNQTSRPFDFVAGDCNGDLIFYSCKYRKEVIRIQNAHRTNIKVVRTLDDSTRLISTSSDGVINVWDLNCRHDQTTGALQLPKKIGSWSWDSSIWCVQGTSLDKLYFGDSQGNVMRANLSSYEDAKLTRIFKPDHHHHHHHHHEHEEQNISTTDAKVKKYGGILDIALLPNEKLLFSFCTDSNLNVLDLTNNHFSVNEGGFALTRSSLLTNRRHVITENTKGQMQRWDIVSCELLNTFDSSEGSFDDIVMKYTSKEILSHWCTVSVKVGMLFVKINPKFLKTEVYGSALKDYQVVNNIEINSDERYNLGKIVINSLFNEFISYEVQKDKLLRKKIFSLKKKDLTNSLTLDTGYNSESKKNNKDKKRKSTFKISSTLSIGNTNSSGTPPNSAPATPVMAETIVLEEQPLLQSASDKAIDDSLELVQPLPASKKPYFRTQSSGSLLSRKFKSFRSTSGRATTGLNTPEEPKGILPDTPHVINDDSAFPQAINTTQQSKDATPESMLWNHPFKLEQKLSAISSQDLPSNNTHNKLRSSENSRANSTSTLEGNEKKKPEFMPDLLEQIQESYKQQYMNTSSLKYLTKRLPVTKIIKASSCPIIRVKSATLVLVHLWKEGSCGGRVLFSTLLPPSHVDNETVSGGKENSKPPDDEEVDLQAVDDDKLGKYDLIDGELGSRLNRRQIFEQLEENLPYWFAKALFRDIKTVEEQPKLNFLIMPWSSVGGSEAAGNENKKKFISASDTTESSGNDSSDSSLGNGNEAVSPSTQQQFHNMLKFGRPKTSEQELNPTDLPRISEANVKLVAPGMIRVKKIKLYVADRFETKTPEMKAKMEPSLWLDLLCRGQVLDNDMTLNTVRTLYWKSQGDIVLEYRRKVHNSPLVHEVNGNEGK", "sequence_length": 1116, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fa78c7d7925c97dbfaa9c45e313aa52c4137bb191255e511b9144667285149ee", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q99247.json", "taxon_id": "559292", "uniprot_accession": "Q99247", "uniprot_release": "2026_03" } ], "pfam_id": "PF11816", "short_name": "Ubl_WDR48-Bun107", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3340-pf11818.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11818", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3340-pf11818.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P23865", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00595", "PF03572", "PF11818", "PF17804" ], "protein_name": "Tail-specific protease", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "81608ab700aedd89a2b08426a530c300d6c2f865833477e1686c0ea63bb9d186", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNMFFRLTALAGLLAIAGQTFAVEDITRADQIPVLKEETQHATVSERVTSRFTRSHYRQFDLDQAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTELGDELRSGKLDVFYDLYNLAQKRRFERYQYALSVLEKPMDFTGNDTYNLDRSKAPWPKNEAELNALWDSKVKFDELSLKLTGKTDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAFAREIDPHTNYLSPRNTEQFNTEMSLSLEGIGAVLQMDDDYTVINSMVAGGPAAKSKAISVGDKIVGVGQTGKPMVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRTVTLTRERIRLEDRAVKMSVKTVGKEKVGVLDIPGFYVGLTDDVKVQLQKLEKQNVSSVIIDLRSNGGGALTEAVSLSGLFIPAGPIVQVRDNNGKVREDSDTDGQVFYKGPLVVLVDRFSASASEIFAAAMQDYGRALVVGEPTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTIQKFYRVNGGSTQRKGVTPDIIMPTGNEETETGEKFEDNALPWDSIDAATYVKSGDLTAFEPELLKEHNARIAKDPEFQNIMKDIARFNAMKDKRNIVSLNYAVREKENNEDDATRLARLNERFKREGKPELKKLDDLPKDYQEPDPYLDETVNIALDLAKLEKARPAEQPAPVK", "sequence_length": 682, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "81608ab700aedd89a2b08426a530c300d6c2f865833477e1686c0ea63bb9d186", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P23865.json", "taxon_id": "83333", "uniprot_accession": "P23865", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3340-pf11818.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11818", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3340-pf11818.yaml" } ], "pfam_ids": [ "PF00595", "PF03572", "PF11818", "PF17804" ], "protein_name": "Tail-specific protease", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTFFRLTALAGLLALAGQSFAVEDITRADQIPVLKEETQHATVSERVTSRFTRSHYRQFDLDEAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTVLGDELRTGKLDVFYDLYNLAQKRRFERYQYALKVLERPMDFTGNDTFNLDRSKAPWPKDEAELNALWDGKVKFDELSLKLTGKSDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAFAREIDPHTNYLSPRNTEQFNTEMSLSLEGIGAVLQMDDDYTVINSLVAGGPAAKSKSISVGDRIVGVGQAGKPMVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIITLTRERIRLEDRAVKMSVKTVGKEKVGVLDIPGFYVGLTDDVKVQLQKLEKQNVNSIVIDLRSNGGGALTEAVSLSGLFIPSGPIVQVRDNNGKVREDSDTDGVVYYKGPLVVLVDRFSASASEIFAAAMQDYGRALIVGEPTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTIQKFYRVNGGSTQRKGVTPDIIMPTGNEETETGEKFEDNALPWDSIDAAKYVKSDDLAPFGPELLKEHNARIAKDPEFQYIMKDIARFNAMKDKRNIVSLNYAQREKENNEEDALRLARINDRFKREGKPLLKKLDDLPKDYQEPDPYLDETVKIALDLAHLEKEKPAEQAAANK", "sequence_length": 682, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cfed31e7d6b22593145ead8f4d17551e67240671cba09405a82ef831772c9c71", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P43669.json", "taxon_id": "99287", "uniprot_accession": "P43669", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3340-pf11818.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11818", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3340-pf11818.yaml" } ], "pfam_ids": [ "PF00595", "PF03572", "PF11818", "PF17804" ], "protein_name": "Tail-specific protease", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVMKFKMSKNVICYTWLSVCLSSAIPAFAVQPTLKPSDISIPAISEESQLATKRATTRLTQSHYRKIKLDDDFSEKIFDRYIKNLDFNHNTFLQSDIDELRQKYGTKLDEQLNQGDLSAAFDIYDVMMKRRYERYTYALSLLDKEPDLNGQDQIEIDREKAAAPQTEADANKLWDARVKNDIINLKLKDKKWSEIKAKLTKRYNLAIRRLTQTKADDIVQIYLNAFAREIDPHTSYLSPRTAKSFNESINLSLEGIGTTLQSEDDEISIKSLVPGAPAERSKKLHPGDKIIGVGQATGDIEDVVGWRLEDLVEKIKGKKGTKVRLEIEPAKGGKSRIITLVRDKVRIEDQAAKLTFEKVSGKNIAVIKIPSFYIGLTEDVKKLLVKLENQKAEALIVDLRENGGGALTEAVALSGLFITDGPVVQVRDAYQRIRVHEDDDATQQYKGLLFVMINRYSASASEIFAAAMQDYRRGIIIGQNTFGKGTVQQSRSLNFIYDLDQSPLGVLQYTIQKFYRVNGGSTQLKGVAADINFPEIIDAKEYGEDKEDNALAWDKIPSASYMEVGNINYIDNAVNILNEKHLARIAKDPEFVALNEELKVRNERRDRKFLSLNYKMRKAENDKDDARRLKDLNERFKREGKKALKDIDDLPKDYEAPDFFLKEAEKIAADFVIFNSDQKINQANGLSEAKTESKK", "sequence_length": 695, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dca492396c7ed202389a9f17eba1462c04eeb9c7e57cf8db2015f15451372be1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P45306.json", "taxon_id": "71421", "uniprot_accession": "P45306", "uniprot_release": "2026_03" } ], "pfam_id": "PF11818", "short_name": "DUF3340", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cytohesin-ubiquitin-protein-inducing-domain-ipr021774.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021774", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cytohesin-ubiquitin-protein-inducing-domain-ipr021774.yaml" } ], "pfam_ids": [ "PF11819" ], "protein_name": "Coiled-coil domain-containing protein 120", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVKGQLISSPTFTAPAALFGEAAPLVKSDRLRGLLDRQRALQEALSVKLQELRKVCLQEAELTGQLPPECPLEPGERPQLVRRRPPAARAYPPPHPNPAHHSLCPAEELALEALEREVSVQQQIAAAARRLALAPDLNGEQRRRRRQVQVDALRRLHELEEQLRDFRARLGLPVLQPLPLSAGALVNAQGVCLGTRLAQLSQEDVVLHSESSSLSESGASHDNEEPHSCFPLTERPSPPKAWDQFRAVSGGSPERRAPWKPPPSDIYGDLKSRRNSVASPTSPTRSLPRSASSFEGRSVPATPVLTRGSGPRLCKPEGLHSRQWSGSQDSQMGFPRPDPASDRASLFAARTRRSNSSEALLVDRAAAGGAGSPPAPLAPPAAGPPVCKSSEVLYERPQPVPSFSSRTTGPPDPPRAARPSSAAPASRGAPRLPTVCGDFLLDYPLDRGLPRGSGGAGWGELLPAPEVPGPLSRRDGLLAMLPGPPPIYAADGSSPLLRSKDPNTRAIRSKPSGLPPEAVEGLEVHPNPLLWMPPPTRIPPAGERGGHKNLALEGLRDWYIRNSGLAVGPQRRPMLPHVGPTHTPFLHARCYEVGQSLYGPPSQAPLPHSRSFTAPPVSGRYGGAFTDG", "sequence_length": 629, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e6ecc2d004c2cb3fc2700a7c8d7a79dc748d562a2a173cbf15587e58dfcfa4ca", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2AEV7.json", "taxon_id": "10090", "uniprot_accession": "A2AEV7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/adherens-junction-maintenance-go0034334.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/adherens-junction-maintenance-go0034334.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/nucleotide-binding-oligomerization-domain-containing-2-signaling-pathway-go0070431.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/nucleotide-binding-oligomerization-domain-containing-2-signaling-pathway-go0070431.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/reactive-oxygen-species-biosynthetic-process-go1903409.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1903409", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/reactive-oxygen-species-biosynthetic-process-go1903409.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/response-to-muramyl-dipeptide-go0032495.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032495", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/response-to-muramyl-dipeptide-go0032495.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/response-to-peptidoglycan-go0032494.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032494", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/response-to-peptidoglycan-go0032494.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cytohesin-ubiquitin-protein-inducing-domain-ipr021774.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021774", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cytohesin-ubiquitin-protein-inducing-domain-ipr021774.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cupid-pf11819.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cupid-pf11819.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q3KP66", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11819" ], "protein_name": "Innate immunity activator protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1eadbb857eadfee1666d25e49a60dbd8473922b7c2ec4d2e44146b95ca120a46", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLQMPKLNEIPPGRAGRREARGEGRWPGQTGPEAARLEWRAQGQAGGARAPWDSWGSSRLPTQPGPGWSRCPPSLLCALSFQKSTMESKDEVSDTDSGIILQSGPDSPVSPMKELTHAVHKQQRALEARLEACLEELRRLCLREAELTGTLPAEYPLKPGEKAPKVRRRIGAAYKLDDWALHREDPLSSLERQLALQLQITEAARRLCLEENLSRQARRQRKHSMLQEEKKLQELQRCLVERRRNSEPPPAAALPLGRELSASDDSSLSDGLLLEEEESQVPKPPPESPAPPSRPLPPQTLEGLQPTGPEAGSPERAPVQNSPWKETSLDHPYEKPRKSSEPWSESSSPATTPQDGPSASSLWLLEPASYHVVPIRGVPGQWQGRTSAPATPEIQGRRGQSQSLRVDSFRAGPEGRGRSAFPRRRPTHYTVTVPDSCFPATKPPLPHAACHSCSEDSGSDVSSISHPTSPGSSSPDISFLQPLSPPKTHRHRGAWVPAGSRELVAHHPKLLLPPGYFPAGRYVVVAESPLPPGEWELRRAAPGPAYEEEGTPLRYQRLVPSRSRIVRTPSLKDSPAGRGLSKAAVSEELKWWHERARLRSTRPHSLDRQGAFRVRSLPLGREGFGRALGPRAQVPTVCVLRRSPDGAPVQVFVPEKGEIISQV", "sequence_length": 663, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "1eadbb857eadfee1666d25e49a60dbd8473922b7c2ec4d2e44146b95ca120a46", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3KP66.json", "taxon_id": "9606", "uniprot_accession": "Q3KP66", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cytohesin-ubiquitin-protein-inducing-domain-ipr021774.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021774", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cytohesin-ubiquitin-protein-inducing-domain-ipr021774.yaml" } ], "pfam_ids": [ "PF11819" ], "protein_name": "Innate immunity activator protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQMPKLNEIPPGRGGPGEPWGEGRWAGPTGPEAARPARGARGQARGARARWDSWEHSRLPTHPGPGWDQCSPSFLCAPSSQKLIMESKDEVSDSDSGIILQSGPDSPVSPMKELTNAVRKQQRALEARLEACLEELRRLCLREAELTGTLPAEYPLKPGEKAPKVRRRIGAAYKLDEWALHREDPLSSLERQLALQLQITEAARRLCAEENLSRQARRQRKHAALQEEKKLRDLQRCLGDRRRNSEPPPTTVPSLGRELSASDDSSLSDGLLLEEEDSQAPKPPPESPAPPSRPLPPQSLEGLQPTGPESGGQERAPIQNSPWKETSLDHPYEKPRKSSELSSESSSPATTPQDQPNPSSLWVLDAASYHVVPIRNVPGQRQGRTSAPATPEMQGRRGQSQSLRVDSFRAGAEGRGRSAFPRRRPTHYTVTVPDSCFTPGKPPLPHPACHSCSEDSGSDVSSISHPTSPGSSSPDISFLRPLCLPEPPRHRGAWGPACGRELAPHYSKLLLPAGYFPTGRYVMVAEGHLPPGEWELCRAAVGAAYDEEGAPLRYQRLVPSHSRIVRTPSLKDSPAGRGLSKAAVSEELKWWHERARLRSSRPHSLDRQGAFRVRSLPPGRESFGRASGPRTQVPPVYVLRRSTDGAPVQVFVPENGEIISQV", "sequence_length": 663, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1b5773eb744ec8b276b48aa42e4177b6348459fded862f1c23a7a793ba4fa123", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7TN12.json", "taxon_id": "10090", "uniprot_accession": "Q7TN12", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cytohesin-ubiquitin-protein-inducing-domain-ipr021774.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021774", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cytohesin-ubiquitin-protein-inducing-domain-ipr021774.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cupid-pf11819.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cupid-pf11819.yaml" } ], "pfam_ids": [ "PF11819" ], "protein_name": "Coiled-coil domain-containing protein 120", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVKGQLISSPTFNAPAALFGEAAPQVKSERLRGLLDRQRTLQEALSLKLQELRKVCLQEAELTGQLPPECPLEPGERPQLVRRRPPTARAYPPPHPNQAHHSLCPAEELALEALEREVSVQQQIAAAARRLALAPDLSTEQRRRRRQVQADALRRLHELEEQLRDVRARLGLPVLPLPQPLPLSTGSVITTQGVCLGMRLAQLSQEDVVLHSESSSLSESGASHDNEEPHGCFSLAERPSPPKAWDQLRAVSGGSPERRTPWKPPPSDLYGDLKSRRNSVASPTSPTRSLPRSASSFEGRSVPATPVLTRGAGPQLCKPEGLHSRQWSGSQDSQMGFPRADPASDRASLFVARTRRSNSSEALLVDRAAGGGAGSPPAPLAPSASGPPVCKSSEVLYERPQPTPAFSSRTAGPPDPPRAARPSSAAPASRGAPRLPPVCGDFLLDYSLDRGLPRSGGGTGWGELPPAAEVPGPLSRRDGLLTMLPGPPPVYAADSNSPLLRTKDPHTRATRTKPCGLPPEAAEGPEVHPNPLLWMPPPTRIPSAGERSGHKNLALEGLRDWYIRNSGLAAGPQRRPVLPSVGPPHPPFLHARCYEVGQALYGAPSQAPLPHSRSFTAPPVSGRYGGCFY", "sequence_length": 630, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "61d65769df728438a42711be2919582bd7bd8e43cf3e2bca2a34cd8cbe86be5e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96HB5.json", "taxon_id": "9606", "uniprot_accession": "Q96HB5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cupid-pf11819.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cupid-pf11819.yaml" } ], "pfam_ids": [ "PF00373", "PF09379", "PF09380", "PF11819" ], "protein_name": "FERM domain-containing protein 4A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVQLVPDSALGLLMMTEGRRCQVHLLDDRKLELLVQPKLLAKELLDLVASHFNLKEKEYFGIAFTDETGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNAKSCIYKELIDVDSEVVFELASYILQEAKGDFSSNEVVRSDLKKLPALPTQALKEHPSLAYCEDRVIEHYKKLNGQTRGQAIVNYMSIVESLPTYGVHYYAVKDKQGIPWWLGLSYKGIFQYDYHDKVKPRKIFQWRQLENLYFREKKFSVEVHDPRRASVTRRTFGHSGIAVHTWYACPALIKSIWAMAISQHQFYLDRKQSKSKIHAARSLSEIAIDLTETGTLKTSKLANMGSKGKIISGSSGSLLSSGSQESDSSQSAKKDMLAALKSRQEALEETLRQRLEELKKLCLREAELTGKLPVEYPLDPGEEPPIVRRRIGTAFKLDEQKILPKGEEAELERLEREFAIQSQITEAARRLASDPNVSKKLKKQRKTSYLNALKKLQEIENAINENRIKSGKKPTQRASLIIDDGNIASEDSSLSDALVLEDEDSQVTSTISPLHSPHKGLPPRPPSHNRPPPPQSLEGLRQMHYHRNDYDKSPIKPKMWSESSLDEPYEKVKKRSSHSHSSSHKRFPSTGSCAEAGGGSNSLQNSPIRGLPHWNSQSSMPSTPDLRVRSPHYVHSTRSVDISPTRLHSLALHFRHRSSSLESQGKLLGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTSHSSSEHYYPAQMNANYSTLAEDSPSKARQRQRQRQRAAGALGSASSGSMPNLAARGGAGGAGGAGGGVYLHSQSQPSSQYRIKEYPLYIEGGATPVVVRSLESDQEGHYSVKAQFKTSNSYTAGGLFKESWRGGGGDEGDTGRLTPSRSQILRTPSLGREGAHDKGAGRAAVSDELRQWYQRSTASHKEHSRLSHTSSTSSDSGSQYSTSSQSTFVAHSRVTRMPQMCKATSAALPQSQRSSTPSSEIGATPPSSPHHILTWQTGEATENSPILDGSESPPHQSTDE", "sequence_length": 1039, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1bac8f55a2552658f66875e2e0908ef7e051c0e5ccbad7a4d9e6f3bad4aeba24", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9P2Q2.json", "taxon_id": "9606", "uniprot_accession": "Q9P2Q2", "uniprot_release": "2026_03" } ], "pfam_id": "PF11819", "short_name": "CUPID", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11820", "short_name": "DUF3339", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11821", "short_name": "ActD", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/btb-sanbr-pf11822.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11822", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/btb-sanbr-pf11822.yaml" } ], "pfam_ids": [ "PF11822" ], "protein_name": "SANT and BTB domain regulator of class switch recombination", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRGCPENNNFLTNNNQMVLDMILYPLIGIPQTINWETVARLVPGLTPKECVKRFDELKSCGSSPVDNQYNPLMAAGEGPVETLATYIKSSLLDAQGDFQETPVDQDTVSKAGRHSIATTRNCSSESENCTARNAGEETGDSEGPNMVIHVCDEAKSLKEDFICPRDLLISEMKYFAEYLSVDAQRWEEVDISVHCDVHIFNWLIKYVKRNTKDSKDCELPALEPGNVISILISSEFLKMDSLVEQCIQYCHKNMNAIVAAPCNMNCINVNLLTRIADLFTHNEIDDLKDKKDKFRSKLFCKKIERLFDPEYFNPDSRNNAATLYRCCLCKKLLTRETERRISCIPGKINVDRHGNIIYIHIRDKTWDVHEYLNSLFEELKSWRDVYWRLWGTINWLTCSRCYQAFLCIEFSHCQYHSEVVVYSSAVNSLNTVGTGIYPCCNQKVLRFDPTQLTKGCKVRDHMVLLHDQGENDDSLSCPTAKILDDLHKHKDVIAVPFLKDPVSDPGVGSCDEKGLEYEILLEPNTPWGSKTGELNAFLSLKNWTLQLKQQSLFSEEEEYTTGSEVTEDEVGDEEEISKKQRKKEKPKKFTKPPKKQLSSPCSQKKEKTLEKSTSRDVSPFVVSMQKNKWDATRSLRFNQDAQREDDQRRMSEITGHLIKMRLGDLDRVKAKESKEFAGGIYSRLEAQVKASVPVTARQNSSDKNQSNIPQRHLFNYVHSNFIRNSQKLETSQMFIN", "sequence_length": 737, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c740accd6a3ebfedf8ab503eeb9d29f049c1313f92b80ffd595dff9bf07706d5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1A5R8.json", "taxon_id": "10116", "uniprot_accession": "A1A5R8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/sant-and-btb-domain-regulator-of-csr-btb-domain-ipr021777.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021777", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sant-and-btb-domain-regulator-of-csr-btb-domain-ipr021777.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/btb-sanbr-pf11822.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11822", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/btb-sanbr-pf11822.yaml" } ], "pfam_ids": [ "PF11822" ], "protein_name": "SANT and BTB domain regulator of class switch recombination", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRGYPENNNFLNNNNQMVLDMILYPLIGIPQTINWETVARLVPGLTPKECVKRFDELKSCGSSPVDNQYNPLMATGEGPVETLATYIKSSLLDTQGDFQETPVDQDTVSKAGRHSIATTRNCSSESENCTARNAGEETGESEGPNMVIHVCDEAKSLKEDFICPRDLLISEMKYFAEYLSMDAQRWEEVDISVHCDVHIFNWLIKYVKRNTKESKDCEIPALEPGNVISILISSEFLKMDSLVEQCIQYCHKNMNAIVAAPCNMNCINANLLTRIADLFTHNEIDDLKDKKDKFRSKLFCKKIERLFDPEYSNPDSRNNAATLYRCCLCKKLLTRETERRIPCIPGKINVDRHGNIIYIHIRDKTWDVHEYLNSLFEELKSWRDVYWRLWGTVNWLTCSRCYQAFLCIEFSHCQYHSEVVVYSSTVNSLNTVGTGIYPCCNQKVLRFDPTQLTKGCKVRDHMVVLHDQGENDDSPSCPPAKILDDLHKHKDVIAVPFLKDAVSDPGVGSCDEKGLEYEILLEPNTPWGSKTGELNAFLSLKNWTLQLKQQSLFSEEEEYTTGSEVTEDEVGDEEEIAKKQRKKEKPKKFTKPPKKQLSSPCSQKKEKTLEKSTSRDVSPFVVSMQKNKWDASRSLRFNQDAQREDDQRRMSEITGHLIKMRLGDLDRVKAKESKEFAGGIYSRLEAQVRASVPVTARQNSSDKNQRSKSRFGQGRPA", "sequence_length": 718, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "67dd2f7efe0492b8d231cb28af56b62c45a7ed22d9f425bffe6e5770fa01288c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q68FF0.json", "taxon_id": "10090", "uniprot_accession": "Q68FF0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/back-btb-and-c-terminal-kelch-domain-the-back-domain-is-found-in-archi-cd14733.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd14733", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/back-btb-and-c-terminal-kelch-domain-the-back-domain-is-found-in-archi-cd14733.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/sant-and-btb-domain-regulator-of-csr-btb-domain-ipr021777.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021777", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sant-and-btb-domain-regulator-of-csr-btb-domain-ipr021777.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/btb-sanbr-pf11822.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11822", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/btb-sanbr-pf11822.yaml" } ], "pfam_ids": [ "PF11822" ], "protein_name": "SANT and BTB domain regulator of class switch recombination", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRGYSENNNFLNNNNQMVLDMILYPLIGIPQTINWETIARLVPGLTPKECAKRFDELKSSGSSPVDNQYNSLMAAGESPVETLATYIKSSLLDIHGEFQETPVGHDAVSKTGRHSIASTRNCSSESENCTTHNGGEMTEESEGPNMVIHVCDEAKNLKEDFTCPRDLLISEMKYFAEYLSMDAQRWEEVDISVHCDVHIFNWLIKYIKRNTKENKDCEMPTLEPGNVISILISSEFLKMDSLVEQCIQYCHKNMNAIVATPCNMNCINANLLTRIADLFSHNEVDDLKDKKDKFKSKLFCKKIERLFDPEYLNPDSRSNAATLYRCCLCKKLLTKETERRIPCIPGKINVDRRGNIVYIHIRDKTWDVHEYLNSLFEELKSWRDVYWRLWGTINWLTCSRCYQAFLCIEFSHCQYHSETVVYPTAASSLNTVGTGIYPCCNQKVLRFDPTQLTKGCKVRDHMVTLRDQGEGGDLPSCPTARMLDDLHKYRDVIVVPFSKDTVSDVGVGLCDEKGIECDVLLEPNTPWGPKTGELNAFLSLKNWTLQLKQQSLFSEEEEYTTGSEVTEDEVGDEEEVSKKQRKKEKPKKFTRQPKKQVSSPCAQRKEKALEKSASRDVSPFVMSMQKNKWDATRSLRFNQDAQREDDQRRMTEITGHLIKMRLGDLDRVKSKEAKEFAGGIYSRLEAQIKASVPVSARQSSSEKNTRSKSRFGQGRPA", "sequence_length": 718, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "146bf51763ea433f5f7f4b4b796f271b06dd1a6c5aea5e70e08c711fdc259b24", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NSI8.json", "taxon_id": "9606", "uniprot_accession": "Q6NSI8", "uniprot_release": "2026_03" } ], "pfam_id": "PF11822", "short_name": "BTB_SANBR", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/putative-se-s-carrier-protein-like-ipr021778.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021778", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/putative-se-s-carrier-protein-like-ipr021778.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/se-s-carrier-pf11823.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/se-s-carrier-pf11823.yaml" } ], "pfam_ids": [ "PF11823" ], "protein_name": "Uncharacterized protein YtiA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKEFLFLFHSTVGVIQTRKALQAAGMTFRVSDIPRDLRGGCGLCIWLTCPPGEEIQWVIPGLTESIYCQQDGVWRCIAHYGVSPR", "sequence_length": 85, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f82f1a406d7d78c5cc8f5cc3ad24f9e647fb0de5e274d6d0345566956f82f262", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DN74.json", "taxon_id": "83333", "uniprot_accession": "P0DN74", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf8182-ipr058495.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR058495", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf8182-ipr058495.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/putative-se-s-carrier-protein-like-ipr021778.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021778", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/putative-se-s-carrier-protein-like-ipr021778.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8182-pf26554.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26554", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8182-pf26554.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/se-s-carrier-pf11823.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/se-s-carrier-pf11823.yaml" } ], "pfam_ids": [ "PF11823", "PF26554" ], "protein_name": "Uncharacterized protein MJ0011", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIGKLKNLFKLGKGKKEEKAKKSLEGKGLIIFENTKDAMRAESILKDKYKIKVVAPPPEIREGCDLAIEYELIDEFGIKRELESNDIKPLKFISLNDYSLKPLELIKVKEVDGFILVRCGNMKITIDKEGNIVNISGGGCPDVPYLALKLKGRNIKDIKEEETPKNLGFTLCAYILNKGSSQRGHSWTIIDFEVLSI", "sequence_length": 197, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1e55bdb06550d1b90c1583d2879c8d7e97a9d7becd0667bc1c41f871c518b67c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q60327.json", "taxon_id": "243232", "uniprot_accession": "Q60327", "uniprot_release": "2026_03" } ], "pfam_id": "PF11823", "short_name": "Se_S_carrier", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11824", "short_name": "DUF3344", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nuc-recep-af1-pf11825.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nuc-recep-af1-pf11825.yaml" } ], "pfam_ids": [ "PF00104", "PF00105", "PF11825" ], "protein_name": "Retinoic acid receptor RXR-alpha", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT", "sequence_length": 462, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e243e32883cfc5ef70c61b40fccb9f5c9241e4ff31f0797437cd643f82d9740", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P19793.json", "taxon_id": "9606", "uniprot_accession": "P19793", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nuc-recep-af1-pf11825.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nuc-recep-af1-pf11825.yaml" } ], "pfam_ids": [ "PF00104", "PF00105", "PF11825" ], "protein_name": "Retinoic acid receptor RXR-alpha", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTKHFLPLDFSTQVNSSSLNSPTGRGSMAVPSLHPSLGPGIGSPLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLNSPMNPVSSTEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQAT", "sequence_length": 467, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d4f58525f3955d72cdcad5fc3eb3be55fbf2bc1eb591aa4f94ea4c076354fcd1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P28700.json", "taxon_id": "10090", "uniprot_accession": "P28700", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nuc-recep-af1-pf11825.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nuc-recep-af1-pf11825.yaml" } ], "pfam_ids": [ "PF00104", "PF00105", "PF11825" ], "protein_name": "Retinoic acid receptor RXR-gamma", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYGNYSHFMKFPTGFGGSPGHTGSTSMSPSVALPTGKPMDSHPSYTDTPVSAPRTLSAVGTPLNALGSPYRVITSAMGPPSGALAAPPGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSSHEDMPVERILEAELAVEPKTESYGDMNVENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDSFLMEMLETPLQIT", "sequence_length": 463, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a019a0900ce3406811a10f6fe496a70c0fa6d5d198d2da59f615cf44a724640f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P28705.json", "taxon_id": "10090", "uniprot_accession": "P28705", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nuc-recep-af1-pf11825.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nuc-recep-af1-pf11825.yaml" } ], "pfam_ids": [ "PF00104", "PF00105", "PF11825" ], "protein_name": "Retinoic acid receptor RXR-gamma", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYGNYSHFMKFPAGYGGSPGHTGSTSMSPSAALSTGKPMDSHPSYTDTPVSAPRTLSAVGTPLNALGSPYRVITSAMGPPSGALAAPPGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECATSGHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLETPLQIT", "sequence_length": 463, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bfcf6d321aeb668b69f32761a2ffc17ddf8b66da1761a9d0ea14562855923b98", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P48443.json", "taxon_id": "9606", "uniprot_accession": "P48443", "uniprot_release": "2026_03" } ], "pfam_id": "PF11825", "short_name": "Nuc_recep-AF1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11826", "short_name": "RctB_central", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11827", "short_name": "DUF3347", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11828", "short_name": "DUF3348", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11829", "short_name": "DUF3349", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3350-pf11830.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11830", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3350-pf11830.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O60343", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00566", "PF00640", "PF11830", "PF30895" ], "protein_name": "TBC1 domain family member 4", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8255116680484aaf900be71d37a6d720316b82fbbfc04a55607b602a349fcd36", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEPPSCIQDEPFPHPLEPEPGVSAQPGPGKPSDKRFRLWYVGGSCLDHRTTLPMLPWLMAEIRRRSQKPEAGGCGAPAAREVILVLSAPFLRCVPAPGAGASGGTSPSATQPNPAVFIFEHKAQHISRFIHNSHDLTYFAYLIKAQPDDPESQMACHVFRATDPSQVPDVISSIRQLSKAAMKEDAKPSKDNEDAFYNSQKFEVLYCGKVTVTHKKAPSSLIDDCMEKFSLHEQQRLKIQGEQRGPDPGEDLADLEVVVPGSPGDCLPEEADGTDTHLGLPAGASQPALTSSRVCFPERILEDSGFDEQQEFRSRCSSVTGVQRRVHEGSQKSQPRRRHASAPSHVQPSDSEKNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCASESLVDEVMLTLKQAFSTAAALQSAKTQIKLCEACPMHSLHKLCERIEGLYPPRAKLVIQRHLSSLTDNEQADIFERVQKMKPVSDQEENELVILHLRQLCEAKQKTHVHIGEGPSTISNSTIPENATSSGRFKLDILKNKAKRSLTSSLENIFSRGANRMRGRLGSVDSFERSNSLASEKDYSPGDSPPGTPPASPPSSAWQTFPEEDSDSPQFRRRAHTFSHPPSSTKRKLNLQDGRAQGVRSPLLRQSSSEQCSNLSSVRRMYKESNSSSSLPSLHTSFSAPSFTAPSFLKSFYQNSGRLSPQYENEIRQDTASESSDGEGRKRTSSTCSNESLSVGGTSVTPRRISWRQRIFLRVASPMNKSPSAMQQQDGLDRNELLPLSPLSPTMEEEPLVVFLSGEDDPEKIEERKKSKELRSLWRKAIHQQILLLRMEKENQKLEASRDELQSRKVKLDYEEVGACQKEVLITWDKKLLNCRAKIRCDMEDIHTLLKEGVPKSRRGEIWQFLALQYRLRHRLPNKQQPPDISYKELLKQLTAQQHAILVDLGRTFPTHPYFSVQLGPGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTLFASQFSLGFVARVFDIIFLQGTEVIFKVALSLLSSQETLIMECESFENIVEFLKNTLPDMNTSEMEKIITQVFEMDISKQLHAYEVEYHVLQDELQESSYSCEDSETLEKLERANSQLKRQNMDLLEKLQVAHTKIQALESNLENLLTRETKMKSLIRTLEQEKMAYQKTVEQLRKLLPADALVNCDLLLRDLNCNPNNKAKIGNKP", "sequence_length": 1298, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8255116680484aaf900be71d37a6d720316b82fbbfc04a55607b602a349fcd36", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O60343.json", "taxon_id": "9606", "uniprot_accession": "O60343", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3350-pf11830.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11830", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3350-pf11830.yaml" } ], "pfam_ids": [ "PF00566", "PF00640", "PF11830", "PF30895" ], "protein_name": "TBC1 domain family member 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAITFTARKHPFPNEVSVDFGLQLVGSLPVHSLTTMPMLPWVVAEVRRLSGQCSKKEPRTKQVRLWVSPSGLRCEPDLEKSQPWDPLICSSIFECKPQRVHKLIHNSHDPSYFACLIKEDAAHRQSLCYVFKADDQTKVPEIISSIRQAGKIARQEELRCPSEFDDTFAKKFEVLFCGRVTVAHKKAPPALIDECIEKFNHVSCGRRTDWEAPTGQPSAPGPRPMRKSFSQPGLRSLAFRKEFQDASLRSSTFSSFDNDIENHLIGGHNVVQPTDMEENRTMLFTIGQSEVYLISPDTKKIALEKNFKEISFCSQGIRHVDHFGFICRECSGGGSGGFHFVCYVFQCTNEALVDEIMMTLKQAFTVAAVQQTAKAPAQLCEGCPLQGLHKLCERIEGMNSSKTKLELQKHLTTLTNQEQATIFEEVQKLRPRNEQRENELIISFLRCLYEEKQKEHSHTGEPKQTLQVAAENIGSDLPPSASRFRLDSLKNRAKRSLTESLESILSRGNKARGLQDHSASVDLDSSTSSTLSNTSKELSMGDKEAFPVSETSFKLLGSSDDLSSDSEGHIAEESALLSPQQAFRRRANTLSHFPVECPAPPEPAQSSPGVSQRKLMRYHSVSTETPHERNVDHLPGGESQGCPGQPSAPPPPRLNPSASSPNFFKYLKHNSSGEQSGNAVPKSVSYRNALRKKLHSSSSVPNFLKFLAPVDENNTCDFKNTNRDFESKANHLGDTDGTPVKTRRHSWRQQIFLRVATPQKACDSPSRYEDYSELGELPPRSPLEPVCEDGPFGPVQEEKRKTSRELRELWKKAILQQILLLRMEKENQKLQASENDLLNKRLKLDYEEITPCLKEVTTVWEKMLSTPGRSKIKFDMEKVHSAVGQGVPRHHRGEIWKFLAEQFHLKHPFPSKQQPKDVPYKELLKKLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTVFASQFPLGFVARVFDMIFLQGSEVIFKVALSLLGSHKPLILQHENLETIVDFIKNTLPNLGLVQMEKTISQVFEMDIAKQLQAYEVEYHVLQEELIESSPLSDNQRMEKLEKTNSSLRKQNLDLLEQLQVANARIQSLEATVEKLLTSESKLKQAALTLEVERSALLQMVEELRRQSARPSTPEPDCTQLEPTGD", "sequence_length": 1255, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "65eb4955e6094e10c3d672d2addb9b1a9a15eb609263aceb43b6f21e70caf219", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q60949.json", "taxon_id": "10090", "uniprot_accession": "Q60949", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3350-pf11830.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11830", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3350-pf11830.yaml" } ], "pfam_ids": [ "PF00566", "PF00640", "PF11830", "PF30895" ], "protein_name": "TBC1 domain family member 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPITFTARKHLLSNEVSVDFGLQLVGSLPVHSLTTMPMLPWVVAEVRRLSRQSTRKEPVTKQVRLCVSPSGLRCEPEPGRSQQWDPLIYSSIFECKPQRVHKLIHNSHDPSYFACLIKEDAVHRQSICYVFKADDQTKVPEIISSIRQAGKIARQEELHCPSEFDDTFSKKFEVLFCGRVTVAHKKAPPALIDECIEKFNHVSGSRGSESPRPNPPHAAPTGSQEPVRRPMRKSFSQPGLRSLAFRKELQDGGLRSSGFFSSFEESDIENHLISGHNIVQPTDIEENRTMLFTIGQSEVYLISPDTKKIALEKNFKEISFCSQGIRHVDHFGFICRESSGGGGFHFVCYVFQCTNEALVDEIMMTLKQAFTVAAVQQTAKAPAQLCEGCPLQSLHKLCERIEGMNSSKTKLELQKHLTTLTNQEQATIFEEVQKLRPRNEQRENELIISFLRCLYEEKQKEHIHIGEMKQTSQMAAENIGSELPPSATRFRLDMLKNKAKRSLTESLESILSRGNKARGLQEHSISVDLDSSLSSTLSNTSKEPSVCEKEALPISESSFKLLGSSEDLSSDSESHLPEEPAPLSPQQAFRRRANTLSHFPIECQEPPQPARGSPGVSQRKLMRYHSVSTETPHERKDFESKANHLGDSGGTPVKTRRHSWRQQIFLRVATPQKACDSSSRYEDYSELGELPPRSPLEPVCEDGPFGPPPEEKKRTSRELRELWQKAILQQILLLRMEKENQKLQASENDLLNKRLKLDYEEITPCLKEVTTVWEKMLSTPGRSKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMDIAKQLQAYEVEYHVLQEELIDSSPLSDNQRMDKLEKTNSSLRKQNLDLLEQLQVANGRIQSLEATIEKLLSSESKLKQAMLTLELERSALLQTVEELRRRSAEPSDREPECTQPEPTGD", "sequence_length": 1168, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "89390461973ad752fc941510f24701667132a8de27086e3e48c2d4ec4c524045", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q86TI0.json", "taxon_id": "9606", "uniprot_accession": "Q86TI0", "uniprot_release": "2026_03" } ], "pfam_id": "PF11830", "short_name": "DUF3350", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/sant-myb-like-dna-binding-domain-of-cell-division-cycle-5-like-protein-cd11659.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd11659", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/sant-myb-like-dna-binding-domain-of-cell-division-cycle-5-like-protein-cd11659.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pre-mrna-splicing-factor-component-cdc5l-cef1-second-sant-myb-like-dom-ipr047240.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR047240", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pre-mrna-splicing-factor-component-cdc5l-cef1-second-sant-myb-like-dom-ipr047240.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pre-mrna-splicing-factor-component-cdc5p-cef1-c-terminal-ipr021786.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021786", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pre-mrna-splicing-factor-component-cdc5p-cef1-c-terminal-ipr021786.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/myb-cef-pf11831.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/myb-cef-pf11831.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P92948", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11831", "PF13921" ], "protein_name": "Cell division cycle 5-like protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c9700f9b2159bec476f9d9b2c3f491fb4ec3133b4f50fd45de894541209887b8", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLLPTQWRTIAPIVGRTPSQCLERYEKLLDAACTKDENYDAADDPRKLRPGEIDPNPEAKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDGRHRKRKRKGIDYNAEIPFEKRAPAGFYDTADEDRPADQVKFPTTIEELEGKRRADVEAHLRKQDVARNKIAQRQDAPAAILQANKLNDPEVVRKRSKLMLPPPQISDHELEEIAKMGYASDLLAENEELTEGSAATRALLANYSQTPRQGMTPMRTPQRTPAGKGDAIMMEAENLARLRDSQTPLLGGENPELHPSDFTGVTPRKKEIQTPNPMLTPSMTPGGAGLTPRIGLTPSRDGSSFSMTPKGTPFRDELHINEDMDMHESAKLERQRREEARRSLRSGLTGLPQPKNEYQIVAQPPPEESEEPEEKIEEDMSDRIAREKAEEEARQQALLKKRSKVLQRDLPRPPAASLAVIRNSLLSADGDKSSVVPPTPIEVADKMVREELLQLLEHDNAKYPLDDKAEKKKGAKNRTNRSASQVLAIDDFDENELQEADKMIKEEGKFLCVSMGHENKTLDDFVEAHNTCVNDLMYFPTRSAYELSSVAGNADKVAAFQEEMENVRKKMEEDEKKAEHMKAKYKTYTKGHERRAETVWTQIEATLKQAEIGGTEVECFKALKRQEEMAASFRKKNLQEEVIKQKETESKLQTRYGNMLAMVEKAEEIMVGFRAQALKKQEDVEDSHKLKEAKLATGEEEDIAIAMEASA", "sequence_length": 844, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c9700f9b2159bec476f9d9b2c3f491fb4ec3133b4f50fd45de894541209887b8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P92948.json", "taxon_id": "3702", "uniprot_accession": "P92948", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/sant-myb-like-dna-binding-domain-of-cell-division-cycle-5-like-protein-cd11659.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd11659", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/sant-myb-like-dna-binding-domain-of-cell-division-cycle-5-like-protein-cd11659.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pre-mrna-splicing-factor-component-cdc5l-cef1-second-sant-myb-like-dom-ipr047240.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR047240", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pre-mrna-splicing-factor-component-cdc5l-cef1-second-sant-myb-like-dom-ipr047240.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pre-mrna-splicing-factor-component-cdc5p-cef1-c-terminal-ipr021786.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021786", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pre-mrna-splicing-factor-component-cdc5p-cef1-c-terminal-ipr021786.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/myb-cef-pf11831.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/myb-cef-pf11831.yaml" } ], "pfam_ids": [ "PF00249", "PF11831" ], "protein_name": "Pre-mRNA-splicing factor CEF1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPVPIYVKGGVWTNVEDQILKAAVQKYGTHQWSKVASLLQKKTARQSELRWNEYLNPKLNFTEFSKEEDAQLLDLARELPNQWRTIADMMARPAQVCVERYNRLLESEDSGGAALSTGVTDLKAGDINPNAETQMARPDNGDLEDEEKEMLAEARARLLNTQGKKATRKIRERMLEESKRIAELQKRRELKQAGINVAIKKPKKKYGTDIDYNEDIVYEQAPMPGIYDTSTEDRQIKKKFEQFERKVNRKGLDGNKDKPSKKNKDKKRKHDENEHVEKAALGESTTLTDEYKKPKLILSAPGTKQGKVTYKKKLESKRQKLIEAQATGTVLTPKELLPHDSGQEDNERSNIKSGKQLKSRIRKFLVQMFASLPSPKNDFEIVLSEDEKEEDAEIAEYEKEFENERAMNEEDNFIEPPSQNDAPRVSLVAVPLAYSTLPIPEFKNNPQSAIDNKYNLLVANAINKEPHMVPEDTVDFLKEVESRMQHITQGRTSMKIQFKTAMPPTEVLLESIQSKVESIEQLQRKLQHVQPLEQQNNEMCSTLCHHSLPALIEGQRKYYADYYAYRQEIRSLEGRRKRLQAMLNSSSSI", "sequence_length": 590, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bb98b3a40aba5735f4248c2039a1f4812c47c7e27288d38309b52ca75c85377b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q03654.json", "taxon_id": "559292", "uniprot_accession": "Q03654", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-protein-import-into-chloroplast-stroma-go1904216.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cpp1-like-pf11833.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cpp1-like-pf11833.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9FN50", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11833" ], "protein_name": "Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "26d037e707298c96bdd99a9f79d39bd463524d0d1e4bb2d93ed4e916cff9ee0a", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSSSLLLSGSTVSSSFIAPSKPSLVRNSSKTSLLPFRNVSRSFKTVKCTVDSSYGGNVPTFPRTRVWDPYKRLGVSPYASEEEIWASRNFLLQQYAGHERSEESIEGAFEKLLMSSFIRRKKTKINLKSKLKKKVEESPPWLKALLDFVEMPPMDTIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACVYFLNEKTKSLGRACLIGIGALVAGWFCGSLIIPMIPTFLIQPTWTLELLTSLVAYVFLFLSCTFLK", "sequence_length": 258, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "26d037e707298c96bdd99a9f79d39bd463524d0d1e4bb2d93ed4e916cff9ee0a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FN50.json", "taxon_id": "3702", "uniprot_accession": "Q9FN50", "uniprot_release": "2026_03" } ], "pfam_id": "PF11833", "short_name": "CPP1-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P92960", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00027", "PF00520", "PF11834" ], "protein_name": "Potassium channel KAT3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "84507502e8201d1da1611d54f83000343dfa3f97f42d4b9751d72a854b523863", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSTTTTEARSPLPLLLRRGRSSTALSASTAEARSPLSILQFRRRSSKDVRNITSVSSSLLPAFGTFIEDDNPSSKPFIVLHFDRRYRLWELFLVILVGYSAWASLFELAFEKAAEGALLTIDLVVDFFFAVDIILTFFVSYLDNTTYLNVTDHKLIAKRYLKSVAFVMDVASTLPIQFIYKTITGDVGRGQAFGFLNLLRLWRLRRVAELFKRLEKDAHFNYFVIRVIKLLCVTIFWIHLAGCILYWIAYHYPRPTDTWIGSQVEDFKERSVWLGYTYSMYWSIVTLTTVGYGDLHAVNSREKTFNMFYMLFNIGLTSYIIGIMTNLVVHGALRTFAMRSAINDILRYTSKNRLPDTMREQMLAHMQLKFKTAELRQEEVLQDLPKAIRSSINQHLFRSIIEEAYLFKGFPEGLLVQLVSQIQAEYFPPKMEIILQNEIPTDFYVIVSGGVDIIASKGVSEQVLAKLGPGSMAGEIGVVFNIPQPFTVRTRRLSQVIRIGHHKFKEMVQSDNDVDAKMIIANFMTYLKGLNDELKKEIPFLRDLLDDADAQVQETVQSEETPQSNDEEIVTVSRHENGQIEERRREGVPKRVIIHGQAPPNQDNKNNGDSNGRLIILPDSIQLLFDLAEKKLGKRGSTIAMADGAHVEQIDALRENDHLYIF", "sequence_length": 662, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "84507502e8201d1da1611d54f83000343dfa3f97f42d4b9751d72a854b523863", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P92960.json", "taxon_id": "3702", "uniprot_accession": "P92960", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/kha-pf11834.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11834", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/kha-pf11834.yaml" } ], "pfam_ids": [ "PF00027", "PF00520", "PF11834" ], "protein_name": "Potassium channel KAT2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSISCTRNFFKRFCVEEYNMDTFKHSSFLSADLLPSLGARINQSTKLRKHIISPFDPRFRGWEMWLVILVIYSAWICPFEFAFITYKKDALFIIDNIVNGFFAIDIILTFFVAYLDSHSYLLVDKPKKIAIRYLSTWFAFDVCSTAPFQSLSLLFKYNGSEIGFRVLSMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFAYLIADQYHDPTKTWIGAVYPNFKETSVWSRYVTALYWSITTLTTTGYGDLHAENPREMLFFVFFMLFNLGFTSYLIGNMTNLVVHWTSRTRNFRDTVRAASEFASRNQLPPNIQDQMLSHICLKFKTEGLKQQEALNGLPKAIRSSIANYLFFPIVQNVYLFHGVSRNFLFQLVSDIDAEYFPPREDVILQNEAPTDLYILVSGAVDFTVYVGEEDQVQGKAVVGDAFGEIGVLCYTPQPFTVRTTELSQILRISKKSLMSAMRAHVEDGRVIMNNLFMKLRGQQSIAIDDPNSEPESLLKEWLVGGSKTGEGNASDQGHGHKYLQLHDSENIDMGSTEWRDSRRSGYGETKRVREHTIEIEEGEKPNKEFDGKGCSDADLTSFEFHSQEAYPYCRSNIQIKQHEAAKPKDKRVTIHLKSRDKDLSKLIILPASIEELLRLAGEKFGYSFTKVTNAENAEIDDEDVIRDGDHLYILINENS", "sequence_length": 697, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "37df1211d3bb99e974b682af9f905f15e19faade0d9d7db0d21091bee3bccd77", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q38849.json", "taxon_id": "3702", "uniprot_accession": "Q38849", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/kha-pf11834.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11834", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/kha-pf11834.yaml" } ], "pfam_ids": [ "PF00027", "PF00520", "PF11834" ], "protein_name": "Potassium channel KAT1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSISWTRNFFERFCVEEYNIDTIKQSSFLSADLLPSLGARINQSTKLRKHIISPFNPRYRAWEMWLVLLVIYSAWICPFQFAFITYKKDAIFIIDNIVNGFFAIDIILTFFVAYLDSHSYLLVDSPKKIAIRYLSTWFAFDVCSTAPFQPLSLLFNYNGSELGFRILSMLRLWRLRRVSSLFARLEKDIRFNYFWIRCTKLISVTLFAIHCAGCFNYLIADRYPNPRKTWIGAVYPNFKEASLWNRYVTALYWSITTLTTTGYGDFHAENPREMLFDIFFMMFNLGLTAYLIGNMTNLVVHWTSRTRTFRDSVRAASEFASRNQLPHDIQDQMLSHICLKFKTEGLKQQETLNNLPKAIRSSIANYLFFPIVHNIYLFQGVSRNFLFQLVSDIDAEYFPPKEDIILQNEAPTDLYILVSGAVDFTVYVDGHDQFQGKAVIGETFGEVGVLYYRPQPFTVRTTELSQILRISRTSLMSAMHAHADDGRVIMNNLFMKLRGQQSIAIDDSNTSGHENRDFKSMGWEEWRDSRKDGYGLDVTNPTSDTALMDAIHKEDTEMVKKILKEQKIERAKVERSSSETAGRSYANDSSKKDPYCSSSNQIIKPCKREEKRVTIHMMSESKNGKLILLPSSIEELLRLASEKFGGCNFTKITNADNAEIDDLDVIWDGDHLYFSSN", "sequence_length": 677, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "628a4b0cad001725587563887ced4d4ad5ae552ce090c95362e8db8fe621d872", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q39128.json", "taxon_id": "3702", "uniprot_accession": "Q39128", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/kha-pf11834.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11834", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/kha-pf11834.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/pentapeptide-pf00805.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00805", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/pentapeptide-pf00805.yaml" } ], "pfam_ids": [ "PF00805", "PF02214", "PF11834" ], "protein_name": "BTB/POZ domain-containing protein KCTD9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRVTLFLNGSPKNGKVVAVYGTLSDLLSVASSKLGIKATSVYNGKGGLIDDIALIRDDDVLFVCEGEPFIDPQTDSKPPEGLLGFHTDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGASLKLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTDLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR", "sequence_length": 389, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6e851b3d88b2708682b1776c5a124daabea344e47172243040cde9a17eab1454", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7L273.json", "taxon_id": "9606", "uniprot_accession": "Q7L273", "uniprot_release": "2026_03" } ], "pfam_id": "PF11834", "short_name": "KHA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 10, "discovery_scanned": true, "example_count": 10, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O95758", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11835", "PF13893", "PF22976" ], "protein_name": "Polypyrimidine tract-binding protein 3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6d03862d711f0a5a97943bd9e2319b3b32c942be56f7751523207906113608eb", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDGVVTDLITVGLKRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI", "sequence_length": 552, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6d03862d711f0a5a97943bd9e2319b3b32c942be56f7751523207906113608eb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O95758.json", "taxon_id": "9606", "uniprot_accession": "O95758", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rrm-8-pf11835.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11835", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rrm-8-pf11835.yaml" } ], "pfam_ids": [ "PF00076", "PF11835", "PF13893", "PF22976" ], "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRRLLPRAEKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS", "sequence_length": 589, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e7b83e519ef6ca16d07cd477eb8474f8141c4f70b20f0ecabce334a03fa13b6b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P14866.json", "taxon_id": "9606", "uniprot_accession": "P14866", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rrm-8-pf11835.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11835", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rrm-8-pf11835.yaml" } ], "pfam_ids": [ "PF11835", "PF13893", "PF22976" ], "protein_name": "Polypyrimidine tract-binding protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDGIVPDIAVGTKRGSDELFSTCVSNGPFIMSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPGIMSASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSKSTI", "sequence_length": 555, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "825b58673c9908ba52c0a7af3f5c887aa0fd39adb7bdc07c8a604fae397ad7ae", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P17225.json", "taxon_id": "10090", "uniprot_accession": "P17225", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rrm-8-pf11835.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11835", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rrm-8-pf11835.yaml" } ], "pfam_ids": [ "PF11835", "PF13893", "PF22976" ], "protein_name": "Polypyrimidine tract-binding protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI", "sequence_length": 557, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aab0c76ff7fdae28f6d15b03443a997f6fbc7bc2c273a07a5fef73bf60c1910f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P26599.json", "taxon_id": "9606", "uniprot_accession": "P26599", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rrm-8-pf11835.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11835", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rrm-8-pf11835.yaml" } ], "pfam_ids": [ "PF00076", "PF11835", "PF13893" ], "protein_name": "Polypyrimidine tract-binding protein homolog 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQFFTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEELQVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAFGGGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALVCKHATSLGGSIIRISFSQLQTI", "sequence_length": 432, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3bd38f012529cb74a405a58a2e8cae69d6ab063455c378f2e39d009b9200dfe5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ICX4.json", "taxon_id": "3702", "uniprot_accession": "Q6ICX4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/rna-recognition-motif-1-rrm1-found-in-vertebrate-regulator-of-differen-cd12779.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd12779", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/rna-recognition-motif-1-rrm1-found-in-vertebrate-regulator-of-differen-cd12779.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/rna-recognition-motif-2-rrm2-found-in-polypyrimidine-tract-binding-pro-cd12693.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd12693", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/rna-recognition-motif-2-rrm2-found-in-polypyrimidine-tract-binding-pro-cd12693.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/heterogeneous-nuclear-ribonucleoprotein-l-rrm-domain-ipr055204.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055204", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/heterogeneous-nuclear-ribonucleoprotein-l-rrm-domain-ipr055204.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rod1-rna-recognition-motif-1-ipr034326.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR034326", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rod1-rna-recognition-motif-1-ipr034326.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rrm-10-pf22976.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22976", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rrm-10-pf22976.yaml" } ], "pfam_ids": [ "PF11835", "PF13893", "PF22976" ], "protein_name": "Polypyrimidine tract-binding protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSSTSAGVYANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAVPGALGPLTLTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI", "sequence_length": 523, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "054775e5e3d26a2f9a23ea7e16da7e630a55135ccb6c2ee2dce29f339a1b6c5f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BHD7.json", "taxon_id": "10090", "uniprot_accession": "Q8BHD7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rrm-8-pf11835.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11835", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rrm-8-pf11835.yaml" } ], "pfam_ids": [ "PF00076", "PF11835", "PF13893", "PF22976" ], "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRRLLPRAEKRRRRLEQRQQPDEQLRRAGAMVKMAAAGGGGGGGRYYGGGNEGGRAPKRLKTENAGDQHGGGGGGGSGAAGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPDYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS", "sequence_length": 586, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "124c7453ba3d6c1f8a665fe93e9263d76c8ce70eca16e0919915805ec05a6c80", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R081.json", "taxon_id": "10090", "uniprot_accession": "Q8R081", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rrm-8-pf11835.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11835", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rrm-8-pf11835.yaml" } ], "pfam_ids": [ "PF00076", "PF11835", "PF13893" ], "protein_name": "Polypyrimidine tract-binding protein homolog 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVVGNVLLVTIEGDDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPVPMPQQPVQNPYAGNPQQYHAAGGSHHQQQQQPQGGWVQPGGQGSMGMGGGGHNHYMAPPSSSSMHQGPGGHMPPQHYGGPGPMH", "sequence_length": 429, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f1286ade5cb415f33ef8e1e4d23aa5ff06e9d819a1f8ed69ecd1a3e59deb374f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FGL9.json", "taxon_id": "3702", "uniprot_accession": "Q9FGL9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rrm-8-pf11835.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11835", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rrm-8-pf11835.yaml" } ], "pfam_ids": [ "PF00076", "PF11835", "PF13893" ], "protein_name": "Polypyrimidine tract-binding protein homolog 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVESHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKGPAVSGSAPPAGWQNPQAQSQYSGYGGSPYMYPSSDPNGASPSGQPPYYG", "sequence_length": 399, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ec4fccc1732e3ae880c5324e04227a297e234922232b0f00b08f9bd482029d0f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9MAC5.json", "taxon_id": "3702", "uniprot_accession": "Q9MAC5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rrm-8-pf11835.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11835", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rrm-8-pf11835.yaml" } ], "pfam_ids": [ "PF11835", "PF13893", "PF22976" ], "protein_name": "Polypyrimidine tract-binding protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI", "sequence_length": 531, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "85980b53112b1c14134cc4eaae21668ec7b706c6ebcfdeff5df2c37848948de4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UKA9.json", "taxon_id": "9606", "uniprot_accession": "Q9UKA9", "uniprot_release": "2026_03" } ], "pfam_id": "PF11835", "short_name": "RRM_8", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11836", "short_name": "Phage_TAC_11", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vigna radiata var. radiata", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/inv-n-pf11837.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11837", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/inv-n-pf11837.yaml" } ], "pfam_ids": [ "PF00251", "PF08244", "PF11837" ], "protein_name": "Acid beta-fructofuranosidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEHHKPLLPTSSHAAPTSSTRKDLLFVLCGLLFLSSLVAYGGYRASGVPHAHLSSPTSNHQQDHQSPTSLPSSKWYPVSRGVSSGVSEKSSNLLFAGEGGASEAFPWDNSMLSWQRTSFHFQPEKNWMNDPNGPMYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDMIHWLHLPLAMVADQWYDKQGVWTGSATILPNGEIIMLYTGSTNESVQVQNLAYPADPSDPLLLDWIKHTGNPVLVPPPGIGAKDFRDPTTAWLTSEGKWRITIGSKLNKTGIALVYDTEDFKTYELKEGLLRAVPGTGMWECVDFFPVSKKNGNGLDTSVNGAEVKHVMKVSLDDDRHDYYAIGTYDDNKVLFTPDDVKNDVGVGLRYDYGIFYASKTFYDQNKDRRILWGWIGESDSEYADVTKGWASVQSIPRTVRLDTKTGSNLLQWPVDEVESLRLRSDEFKSLKAKPGSVVSLDIETATQLDVVAEFEIDTESLEKTAESNEEFTCSSSGGAAQRGALGPFGLLVLADEGLSEYTPVYFYVIKGRNGNLRTSFCSDQSRSSQANDVRKQIFGSVVPVLKGEKFSLRMLVDHSIVESFAQGGRTCVTSRVYPTKAIYGAARLFLFNNATEATVTASLKVWQMNSAFIRPFPFNPDQKS", "sequence_length": 649, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9ed9dbbf3f41c6f0cc2833612aba7a20a8b52a4cf5900765d9a15598552716ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P29001.json", "taxon_id": "3916", "uniprot_accession": "P29001", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/inv-n-pf11837.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11837", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/inv-n-pf11837.yaml" } ], "pfam_ids": [ "PF00251", "PF08244", "PF11837" ], "protein_name": "Acid beta-fructofuranosidase 4, vacuolar", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASSDALLPISAREEEPLCPYTRLPMADPNQETHGPRRRRPFKGLLAVSFGLLFIAFYVALIATHDGSRSNDEGIDETETITSRARLAGVSEKRNDGLWKLSGDRNTPAFEWNNSMLSWQRTAFHFQPEQNWMNDPNGPLFYKGWYHFFYQYNPNAAVWGDIVWGHAVSRDLIHWVHLPIAMVADQWYDSNGVWTGSATFLPDGSIVMLYTGSTDKAVQVQNLAYPEDPNDPLLLKWVKFPGNPVLVPPPGILPKDFRDPTTAWKTSEGKWRITIGSKLNKTGISLVYDTIDFKTYEKLDTLLHRVPNTGMWECVDFYPVSKTAGNGLDTSVNGPDVKHIVKASMDDTRFDHYAVGTYFDSNGTWIPDDPTIDVGMTASLRYDYGKFYASKSFYDQNKGRRVLWSWIGESDSEASDVQKGWSSLQGIPRTVVLDTKTGKNLVQWPVEEIKSLRLSSKQFDLEVGPGSVVPVDVGSAAQLDIEAEFEINKESLDKIIGNASVVAEAEEFSCEKSGGSTVRGALGPFGFSVLATESLSEQTPVYFYVAKGKDSELKTFFCTDTSRSSVANDVVKPIYGSVVPVLKGEKLTMRILVDHSIVEAFGQGGRTCITSRVYPTTAIYGAAKLFLFNNALDATVTASFTVWQMNSAFIHPYSDEAVRALSRT", "sequence_length": 664, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "191703a6426df793fe6caf14010c4d4a8bab05121a09642743dcf5ac29ff2621", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q39041.json", "taxon_id": "3702", "uniprot_accession": "Q39041", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/inv-n-pf11837.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11837", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/inv-n-pf11837.yaml" } ], "pfam_ids": [ "PF00251", "PF08244", "PF11837" ], "protein_name": "Acid beta-fructofuranosidase 3, vacuolar", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASTEALLPVTSLQDPLSESRSDQIPETRRRRPIKVHLAVYSGLLLIALYVTLIVTHDGSKAEIATESRPRMAGVSEKSNDGVWISSDDGKVEAFPWNNTILSWQRTAFHFQPEKNWMNDPNGPLFYKGWYHFFYQYNPNAAVWGDIVWGHAVSKDLIHWLYLPIAMVPDQWYDANGVWTGSATFLDDGSIVMLYTGSTDEFVQVQNLAYPEDPSDPLLLKWVKFSGNPVLVPPPGIGAKDFRDPTTAWKTSSGKWRITIGSKINRTGISLIYDTTDFKTYEKHETLLHQVPNTGMWECVDFYPVSKTQLNGLDTSVNGPDVKHVIKASMDDTRIDHYAIGTYDDSNATWVPDNPSIDVGISTGLRYDYGKYYASKTFYDQNKGRRILWGWIGESDSEAADVQKGWSSVQGIPRTVVLDTRTHKNLVQWPVEEIKSLRLSSKKFDMTIGPGTVVPVDVGSATQLDIEAEFEIKTDDLKLFFDDDSVEADNKFSCETNGGSTARGALGPFGFSVLADEGLSEQTPVYFYVTKGKHSKLNTVFCTDTSRSTLANDVVKPIYGSFVPVLKGEKLTMRILVDHSIVEGFAQGGRSCITSRVYPTKAIYGATKLFLFNNAIDATVTASFTVWQMNNAFIHPYSSDDLGVPSST", "sequence_length": 648, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1a90e7d6df7c10557f7c48ada0afad3e18a1bc7c7f4ad31858577940bdf77793", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q43348.json", "taxon_id": "3702", "uniprot_accession": "Q43348", "uniprot_release": "2026_03" } ], "pfam_id": "PF11837", "short_name": "INV_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P15144", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01433", "PF11838", "PF17900" ], "protein_name": "Aminopeptidase N", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "99ba03877f7508cb6e5c6c667227b31a6284a53578b8194c95af101ff88a3248", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAKGFYISKSLGILGILLGVAAVCTIIALSVVYSQEKNKNANSSPVASTTPSASATTNPASATTLDQSKAWNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYMEGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTLSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEVVLQWFTENSK", "sequence_length": 967, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "99ba03877f7508cb6e5c6c667227b31a6284a53578b8194c95af101ff88a3248", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P15144.json", "taxon_id": "9606", "uniprot_accession": "P15144", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-meiotic-cell-cycle-process-involved-in-oocyte-maturation-go1903538.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1903538", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-meiotic-cell-cycle-process-involved-in-oocyte-maturation-go1903538.yaml" } ], "pfam_ids": [ "PF01433", "PF11838", "PF17900" ], "protein_name": "Putative aminopeptidase-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRKLLLLLCFIGLFSLISTAPAPNNVGLESEFTEGHAETINLEEVEFNHPSILPEHPDNFRQDKLAARKRQSLYVTKTRLPPNLYAIDYSLWFQPYFPSPGVQYAPEKNFTFDGRASIQVEALVASDRFILNAYNFKIQSYKVVDIDGTVVPINSISQDDTTQQLSLITNANGVVAGQIYNIEFVYTGIINPYTDGGVYYTSYNDPQGNTHYMIATHMEPFSARKVFPSLDEPSYKAKFTITVQYPASQVALSNMMETEPTKIDNIWSTITFPQTPKMSSYLIAFAVGPYVNSQYVNKHNTLTRAWGWPGTEQYLQFAAQNAGECLYQLGEYTGIKFPLSKADQLGMPEFLAGAMENWGLIIYKYQYIAYNPTTMTTRNMEAAAKVMCHELAHQWFGDLVTTAWWDDLFLNEGFADYFMTFIQKSVYPQQATYLDTLQVLDELQVGLTADVRYDAHPLVYPDGPAFDDITYNKGASMLRMLSDVLGADVFKQGIRAYLQKMQYSNANDFDLFSTLTDTAKSNNILDWCGLPLNVTDFMQPYIHQTNHPLIRYNNNQKIGGSTFSQEPFLDISDLTATPWNYTWSIPLTSANLRHADPYKQWLPRQQGCANMNENIQEERIKEPNKRAVQWELTSITSATYGRIIYDDIGFDRILKLIKQDDINDNLKLTLLADEYNYMLREKKANRPFGYNRFLDLAKVIFNTQSFTNYPSYGVFAQAQPVLEQIAQLYRDGIDAEFVPRLYKLFFQNSYNQLKWQDTSIWDTDTFSEVFLPFAVRYDIGDVQNRTLNMFANVKSACINSLNGTAWCNPYSTNLRKAIYCGAAKYAPATSDYFFQMLHSYNKEVITNPYFYQEYMALLEGMSCTQSPATLKVLIRLFTTSTLNPSTIFGFLKYNPAASDVLYNYFMANPQLVNSTMLDAYLDAMTYNWNSYFREGQLSTLMNTLTLTNDQFDIFDFYINRVSLMFEYKSTYALPTYNWLYDNLVVIGKTPWEKTPNIDAVFPYYKLDLQVNIPGSGPYQWYENMTFSATSTVTFQLVSPTSSITINAHRLMFDPVSIRLYNENDENAHTPIPIDFSKVMKDYDKGTVTIPTMNNTVLYPNQYSLFIEYTGFIFQNPDEGDASNTYLGGLNNRKGWIFTTDFEGGPGARSLLPCWDEPSYKGQFEVSVFHPTDMIALSNEVDIQRTIYDNGWTTTKFATTNQMSTYLLALCVGHFSNLATVTRTGVLTRVWTWSGMEQYGEFALNVTAGTIDFMENYFSYDFPLKKLDVMALPEYTMNAGAMENWGLIIGEYSLFMFDPDYATTRDITEVAETTAHEVVHQWFGDIVTLDWWNDIFLNEGFAQYWFANGIDNTFPEQHAYSIDYNRFYMNHIALKYDCIPGVAKPVISDTPPVFGIEPYYKGSALLNLLNNVLTPAVFQEGLSSYLTQYGYVNASPRNLWTSLTVAAQRHNITDWNGQPLDVSSFMDPYTLQTSYPIITLTLRGTSTVQANQQSCMSDETLWNVPLFTQTPGALDFNWFVNFTGGNDATWLRPLPTGYRVDNAGSTSFARINYDDKSWYSIQAQLLSNMNTMSSTTRAMLLDDANFFYQSGRWEMTKFLDLTLYLVNEDSLAPWEQAIEFFTEMLNRFQYQPEIDTVRNYVIQITKNAVSKFQWNTNGLWANDRIVQLLVNVNNLAVNRQSRQVALTLFNNFVLKCKYSLSGTGKCSGIHPNLRQPTYCYGLRQSNNIDDFTTVNNLYSWFVQNAGYLQTDGSNLLNALGCVQNLDLQKTMLRSILSGDYPPSLLNSIAVHDDSSDVLYNFLLDNTQDILNAPFDFSLYVKAMFQNWSTSNQLELAKDFQNSSNYNLLNAAQKNIYKQGILTVNSNANWMLIYKTPFLEWIQKNFGAPNL", "sequence_length": 1890, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "da349c66d6b2766e09bedc8cc60c671103179c27064a18923eb1bfb9f5641869", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q22531.json", "taxon_id": "6239", "uniprot_accession": "Q22531", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/erap1-c-pf11838.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/erap1-c-pf11838.yaml" } ], "pfam_ids": [ "PF01433", "PF11838", "PF17900" ], "protein_name": "Endoplasmic reticulum aminopeptidase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVFLPLKWSLATMSFLLSSLLALLTVSTPSWCQSTEASPKRSDGTPFPWNKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGAGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRTKEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQSEKLERM", "sequence_length": 941, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e7a676d4403be4bad98f60d855ac133133ae972ea93b1c2cba8d12ba8f84fb28", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NZ08.json", "taxon_id": "9606", "uniprot_accession": "Q9NZ08", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/erap1-c-pf11838.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/erap1-c-pf11838.yaml" } ], "pfam_ids": [ "PF01433", "PF11838", "PF17900" ], "protein_name": "Leucyl-cystinyl aminopeptidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPFTNDRLQLPRNMIENSMFEEEPDVVDLAKEPCLHPLEPDEVEYEPRGSRLLVRGLGEHEMEEDEEDYESSAKLLGMSFMNRSSGLRNSATGYRQSPDGACSVPSARTMVVCAFVIVVAVSVIMVIYLLPRCTFTKEGCHKKNQSIGLIQPFATNGKLFPWAQIRLPTAVVPLRYELSLHPNLTSMTFRGSVTISVQALQVTWNIILHSTGHNISRVTFMSAVSSQEKQAEILEYAYHGQIAIVAPEALLAGHNYTLKIEYSANISSSYYGFYGFSYTDESNEKKYFAATQFEPLAARSAFPCFDEPAFKATFIIKIIRDEQYTALSNMPKKSSVVLDDGLVQDEFSESVKMSTYLVAFIVGEMKNLSQDVNGTLVSIYAVPEKIGQVHYALETTVKLLEFFQNYFEIQYPLKKLDLVAIPDFEAGAMENWGLLTFREETLLYDSNTSSMADRKLVTKIIAHELAHQWFGNLVTMKWWNDLWLNEGFATFMEYFSLEKIFKELSSYEDFLDARFKTMKKDSLNSSHPISSSVQSSEQIEEMFDSLSYFKGSSLLLMLKTYLSEDVFQHAVVLYLHNHSYASIQSDDLWDSFNEVTNQTLDVKRMMKTWTLQKGFPLVTVQKKGKELFIQQERFFLNMKPEIQPSDTSYLWHIPLSYVTEGRNYSKYQSVSLLDKKSGVINLTEEVLWVKVNINMNGYYIVHYADDDWEALIHQLKINPYVLSDKDRANLINNIFELAGLGKVPLKRAFDLINYLGNENHTAPITEALFQTDLIYNLLEKLGYMDLASRLVTRVFKLLQNQIQQQTWTDEGTPSMRELRSALLEFACTHNLGNCSTTAMKLFDDWMASNGTQSLPTDVMTTVFKVGAKTDKGWSFLLGKYISIGSEAEKNKILEALASSEDVRKLYWLMKSSLNGDNFRTQKLSFIIRTVGRHFPGHLLAWDFVKENWNKLVQKFPLGSYTIQNIVAGSTYLFSTKTHLSEVQAFFENQSEATFRLRCVQEALEVIQLNIQWMEKNLKSLTWWL", "sequence_length": 1025, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "af9d0a0d9d335ee165532ecbc020f3e0ecb82944f3feba9df619e34c98bd1106", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UIQ6.json", "taxon_id": "9606", "uniprot_accession": "Q9UIQ6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/erap1-c-pf11838.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/erap1-c-pf11838.yaml" } ], "pfam_ids": [ "PF01433", "PF11838", "PF17900" ], "protein_name": "Thyrotropin-releasing hormone-degrading ectoenzyme", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALDGELGEQEEEKKKKKKKKRKKKKEEEEEEEGAEKSSSPFAAAMGEDDAALRAGSRGLSDPWADSVGVRPRTTERHIAVHKRLVLAFAVSLVALLAVTMLAVLLSLRFDECGASATPGADGGPSGFPERGGNGSLPGSARRNHHAGGDSWQPEAGGVASPGTTSAQPPSEEEREPWEPWTQLRLSGHLKPLHYNLMLTAFMENFTFSGEVNVEIACRNATRYVVLHASRVAVEKVQLAEDRAFGAVPVAGFFLYPQTQVLVVVLNRTLDAQRNYNLKIIYNALIENELLGFFRSSYVLHGERRFLGVTQFSPTHARKAFPCFDEPIYKATFKISIKHQATYLSLSNMPVETSVFEEDGWVTDHFSQTPLMSTYYLAWAICNFTYRETTTKSGVVVRLYARPDAIRRGSGDYALHITKRLIEFYEDYFKVPYSLPKLDLLAVPKHPYAAMENWGLSIFVEQRILLDPSVSSISYLLDVTMVIVHEICHQWFGDLVTPVWWEDVWLKEGFAHYFEFVGTDYLYPGWNMEKQRFLTDVLHEVMLLDGLASSHPVSQEVLQATDIDRVFDWIAYKKGAALIRMLANFMGHSVFQRGLQDYLTIHKYGNAARNDLWNTLSEALKRNGKYVNIQEVMDQWTLQMGYPVITILGNTTAENRIIITQQHFIYDISAKTKALKLQNNSYLWQIPLTIVVGNRSHVSSEAIIWVSNKSEHHRITYLDKGSWLLGNINQTGYFRVNYDLRNWRLLIDQLIRNHEVLSVSNRAGLIDDAFSLARAGYLPQNIPLEIIRYLSEEKDFLPWHAASRALYPLDKLLDRMENYNIFNEYILKQVATTYIKLGWPKNNFNGSLVQASYQHEELRREVIMLACSFGNKHCHQQASTLISDWISSNRNRIPLNVRDIVYCTGVSLLDEDVWEFIWMKFHSTTAVSEKKILLEALTCSDDRNLLNRLLNLSLNSEVVLDQDAIDVIIHVARNPHGRDLAWKFFRDKWKILNTRYGEALFMNSKLISGVTEFLNTEGELKELKNFMKNYDGVAAASFSRAVETVEANVRWKMLYQDELFQWLGKALRH", "sequence_length": 1069, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6c9970c56ccbb65a548e28f882ff47d2881f681d9b8885b79b2cafe7bf3ccbab", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UKU6.json", "taxon_id": "9606", "uniprot_accession": "Q9UKU6", "uniprot_release": "2026_03" } ], "pfam_id": "PF11838", "short_name": "ERAP1_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/alanine-zipper-pf11839.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11839", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/alanine-zipper-pf11839.yaml" } ], "pfam_ids": [ "PF11839" ], "protein_name": "Major outer membrane lipoprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNVLKFSALALAAVLATGCSSHSKETEARLTATEDAAARAQARADEAYRKADEALGAAQKAQQTADEANERALRMLEKASRK", "sequence_length": 83, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "96435a8071b9be477d0a2159d399b6e1a24e72642f4095e54b63d60b88b8d591", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P11221.json", "taxon_id": "208964", "uniprot_accession": "P11221", "uniprot_release": "2026_03" } ], "pfam_id": "PF11839", "short_name": "Alanine_zipper", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11840", "short_name": "DUF3360", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8BHL5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04727", "PF11841", "PF16457", "PF26964" ], "protein_name": "Engulfment and cell motility protein 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "848355940277d35ff2ddde1ae1a37c6b91cf55e1374892764230fc115df0a777", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPPPSDIVKVAIEWPGANAQLLEIDQKRPLASIIKEVCDGWSLPNPEYYTLRYADGPQLYVTEQTRNDIKNGTILQLAVSPSRAARQLMERTQSSSMETRLDAMKELAKLSADVTFATEFINMDGIIVLTRLVESGTKLLSHYSEMLAFTLTAFLELMDHGIVSWDMVSVTFIKQIAGYVSQPMVDVSILQRSLAILESMVLNSQSLYQKIAEEITVGQLISHLQVSNQEIQTYAIALINALFLKAPEDKRQDKHLNPLDLPVTDMANAFAQKHLRSIILNHVIRGNRPIKTEMAHQLYVLQVLTFNLLEERMMTKMDPNDQAQRDIIFELRRIAFDAESDPSNVPGSGTEKRKAMYTKDYKMLGFTNHINPALDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKHECPFGRSAIELTKMLCEILQVGELPNEGRNDYHPMFFTHDRAFEELFGICIQLLNKTWKEMRATAEDFNKVMQVVREQITRALPSKPNSLDQFKSKLRSLSYSEILRLRQSERMSQDDFQSPPIVELREKIQPEILELIKQQRLNRLCEGSSFRKIGNRRRQERFWHCRLALNHKVLHYGDLDDNPQGEVTFESLQEKIPVADIKAIVTGKDCPHMKEKSALKQNKEVLELAFSILYDPDETLNFIAPNKYEYCIWIDGLSALLGKDMSSELTKSDLDTLLSMEMKLRLLDLENIQIPEAPPPVPKEPSSYDFVYHYG", "sequence_length": 732, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "848355940277d35ff2ddde1ae1a37c6b91cf55e1374892764230fc115df0a777", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BHL5.json", "taxon_id": "10090", "uniprot_accession": "Q8BHL5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/elmo-n-pf26964.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26964", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/elmo-n-pf26964.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/elmo-arm-pf11841.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11841", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/elmo-arm-pf11841.yaml" } ], "pfam_ids": [ "PF04727", "PF11841", "PF16457", "PF26964" ], "protein_name": "Engulfment and cell motility protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPPSDIVKVAIEWPGAYPKLMEIDQKKPLSAIIKEVCDGWSLANHEYFALQHADSSNFYITEKNRNEIKNGTILRLTTSPAQNAQQLHERIQSSSMDAKLEALKDLASLSRDVTFAQEFINLDGISLLTQMVESGTERYQKLQKIMKPCFGDMLSFTLTAFVELMDHGIVSWDTFSVAFIKKIASFVNKSAIDISILQRSLAILESMVLNSHDLYQKVAQEITIGQLIPHLQGTDQEIQTYTIAVINALFLKAPDERRQEMANILAQKQLRYIILTHVIRAQRAINNEMAHQLYVLQVLTFNLLEDRMMTKMDPQDQAQRDIIFELRRIAFDAESEPNNSSGSMEKRKSMYTRDYKKLGFINHVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKHECPFGRSSIELTKMLCEILKVGELPSETCNDFHPMFFTHDRSFEEFFCICIQLLNKTWKEMRATSEDFNKVMQVVKEQVMRALTTKPSSLDQFKSKLQNLSYTEILKIRQSERMNQEDFQSRPILELKEKIQPEILELIKQQRLNRLVEGTCFRKLNARRRQDKFWYCRLSPNHKVLHYGDLEESPQGEVPHDSLQDKLPVADIKAVVTGKDCPHMKEKGALKQNKEVLELAFSILYDSNCQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSMEIKLRLLDLENIQIPDAPPPIPKEPSNYDFVYDCN", "sequence_length": 727, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "04ef84c24f7dabbe40e282281b57f88368a116316c2613f28bc5d74143d9cd6b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BPU7.json", "taxon_id": "10090", "uniprot_accession": "Q8BPU7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/elmo-armadillo-like-helical-domain-ipr024574.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024574", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/elmo-armadillo-like-helical-domain-ipr024574.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/6-10-250-810-6-10-250-810.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.10.250.810", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-10-250-810-6-10-250-810.yaml" } ], "pfam_ids": [ "PF04727", "PF11841", "PF16457", "PF26964" ], "protein_name": "Engulfment and cell motility protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPPRNVVKIAVQMSDAIPQLIQLDQAKPLATVLKEVCDAWSLTHPEHYALQFADGHRKYITENNRLEIKNGSILCLSTAPDLKAQQLLGRLQNTSREGCCEVLRNLVLLASDMTFAQEVISRDGLQKLSTIIENGDDLGEMLALGLRAFLELMEHGVVSWETLSISFVRKVISYVNMNLMDASVQPLALRLLESVTLSSPALGQLVKSEVPLDRLLVHLQVMNHQLQTKAMALLTALLQGASPTERKEMLDHLWKKNLRQFIYKNIIHSATPMGDEMAHHLYVLQALTLGLLEPRMRTPLDPYSQEQRDQLQALRQAAFEPEGESLGTGLSADRRRSLCVREFRKLGFSNSNPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECPFARSSIQLTALLCELLRVGEPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEMRATQEDFDKVMQVVREQLARTLALKPTSLELFRTKVNALTYGEVLRLRQTERLHQEGTLAPPILELREKLKPELMGLIRQQRLLRLCEGMLFRKISSRRRQDKLWFCCLSPNHKVLQYGDVEEGAKPPTLESLPEQLPVADIRALLMGKDCPHVREKGSGKQNKDLYELAFSISYDHGEEEAYLNFIAPSKRDFYLWTDGLSALLGSTMGSELTRLDLEQLLTMETKLRLLELENVPIPEQPPPVPPPPTNFNFCYDYSITEP", "sequence_length": 720, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e963a606a9c8b7f1be2660805e01dcba362dccfc25a984bdcfc7f325b84eecc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BYZ7.json", "taxon_id": "10090", "uniprot_accession": "Q8BYZ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/guanyl-nucleotide-exchange-factor-complex-go0032045.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032045", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/guanyl-nucleotide-exchange-factor-complex-go0032045.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/proline-rich-region-binding-go0070064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/proline-rich-region-binding-go0070064.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/apoptotic-process-involved-in-development-go1902742.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1902742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/apoptotic-process-involved-in-development-go1902742.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cytoskeletal-rearrangement-involved-in-phagocytosis-engulfment-go0060097.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0060097", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cytoskeletal-rearrangement-involved-in-phagocytosis-engulfment-go0060097.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-distal-tip-cell-migration-go1903356.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1903356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-distal-tip-cell-migration-go1903356.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-engulfment-of-apoptotic-cell-go1901076.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1901076", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-engulfment-of-apoptotic-cell-go1901076.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/elmo-armadillo-like-helical-domain-ipr024574.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024574", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/elmo-armadillo-like-helical-domain-ipr024574.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/elmo-domain-ipr006816.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006816", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/elmo-domain-ipr006816.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ph-12-pf16457.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16457", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ph-12-pf16457.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/elmo.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51335", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/elmo.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/6-10-10-90-6-10-10-90.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.10.10.90", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-10-10-90-6-10-10-90.yaml" } ], "pfam_ids": [ "PF04727", "PF11841", "PF16457" ], "protein_name": "Cell death abnormality protein 12", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFHMPLKELQPVDTSLPEHVVKGAVVIDKEFTIWNHRAVIPSNALHTVFITINLLEQKLTDVVKMAARSMNLSEDDSYGLMADKPKRFITDDNLNSLGSGFILTLCASPDHYVKRITEILTEGNNISQMENAVKTLDEFSLDPALIEAFYRCSSLELLFSLIRDDRVCMSSTLLSTCLRALSSMLELAVGDFTWKSVPNDVVVSMASLVTGKAKREEANTLLAALQMLEQLVIGDDTTRDWILEEVPIETLIRHVEKSDERIALCALSLMNSMIRRCPDDEKRFELIKSLEVVPFRNAVHSSLLRGGGGVRNLNAIEQLVEVQRSLISAYETSPPTDAEVQKILDIESSEDVSEEIREMWKSQIGEHRCGRLAAISMVQFAEKSPQDLRMLISENTMRIEGGKWQLIPMWMRCCDIAAELFRVIPGRDELDRLIVVLFSTETPFPAVFACIVHLFHRTWREMQAKGGEMEKVACVVLEQLRHVLKRREIQDVEELSADLETFSYRAMQEIWREEQLGKENIQLHSEAVIQLKSKLRPKMEELVRINHLNYLKLGAVFRKPQKSKSLAKLAFWHWKLDASEKMLTITGCDGENYVEGVQRDDIRQVWIKDIADVTNNDEIDRKASSSRFTSSPSTQMLRGIRVQLKTTNDMKEGEVLMALTSDETQSVIWLEGLAELIGSKAVKSETDAMVERMLKMELRVRLLNVKLTNPEEKPEIPPIPDDIKSFISKF", "sequence_length": 731, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "563f67a75bf3dc90be53174d2490e27b298a4e40ec70eb9d76683e2c02cd224d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8STE5.json", "taxon_id": "6239", "uniprot_accession": "Q8STE5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/elmo-n-pf26964.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26964", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/elmo-n-pf26964.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/elmo-ced12-pf04727.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04727", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/elmo-ced12-pf04727.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/elmo-arm-pf11841.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11841", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/elmo-arm-pf11841.yaml" } ], "pfam_ids": [ "PF04727", "PF11841", "PF16457", "PF26964" ], "protein_name": "Engulfment and cell motility protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPPADIVKVAIEWPGAYPKLMEIDQKKPLSAIIKEVCDGWSLANHEYFALQHADSSNFYITEKNRNEIKNGTILRLTTSPAQNAQQLHERIQSSSMDAKLEALKDLASLSRDVTFAQEFINLDGISLLTQMVESGTERYQKLQKIMKPCFGDMLSFTLTAFVELMDHGIVSWDTFSVAFIKKIASFVNKSAIDISILQRSLAILESMVLNSHDLYQKVAQEITIGQLIPHLQGSDQEIQTYTIAVINALFLKAPDERRQEMANILAQKQLRSIILTHVIRAQRAINNEMAHQLYVLQVLTFNLLEDRMMTKMDPQDQAQRDIIFELRRIAFDAESEPNNSSGSMEKRKSMYTRDYKKLGFINHVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKHECPFGRSSIELTKMLCEILKVGELPSETCNDFHPMFFTHDRSFEEFFCICIQLLNKTWKEMRATSEDFNKVMQVVKEQVMRALTTKPSSLDQFKSKLQNLSYTEILKIRQSERMNQEDFQSRPILELKEKIQPEILELIKQQRLNRLVEGTCFRKLNARRRQDKFWYCRLSPNHKVLHYGDLEESPQGEVPHDSLQDKLPVADIKAVVTGKDCPHMKEKGALKQNKEVLELAFSILYDSNCQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSMEIKLRLLDLENIQIPDAPPPIPKEPSNYDFVYDCN", "sequence_length": 727, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "32f23fc0940d1a7af852095c6cb0e7934875c428ed8ad7cfd5163a84f53c2606", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q92556.json", "taxon_id": "9606", "uniprot_accession": "Q92556", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/elmo-n-pf26964.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26964", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/elmo-n-pf26964.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/elmo-ced12-pf04727.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04727", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/elmo-ced12-pf04727.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/elmo-arm-pf11841.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11841", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/elmo-arm-pf11841.yaml" } ], "pfam_ids": [ "PF04727", "PF11841", "PF16457", "PF26964" ], "protein_name": "Engulfment and cell motility protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPPSDIVKVAIEWPGANAQLLEIDQKRPLASIIKEVCDGWSLPNPEYYTLRYADGPQLYITEQTRSDIKNGTILQLAISPSRAARQLMERTQSSNMETRLDAMKELAKLSADVTFATEFINMDGIIVLTRLVESGTKLLSHYSEMLAFTLTAFLELMDHGIVSWDMVSITFIKQIAGYVSQPMVDVSILQRSLAILESMVLNSQSLYQKIAEEITVGQLISHLQVSNQEIQTYAIALINALFLKAPEDKRQDMANAFAQKHLRSIILNHVIRGNRPIKTEMAHQLYVLQVLTFNLLEERMMTKMDPNDQAQRDIIFELRRIAFDAESDPSNAPGSGTEKRKAMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKHECPFGRSAIELTKMLCEILQVGELPNEGRNDYHPMFFTHDRAFEELFGICIQLLNKTWKEMRATAEDFNKVMQVVREQITRALPSKPNSLDQFKSKLRSLSYSEILRLRQSERMSQDDFQSPPIVELREKIQPEILELIKQQRLNRLCEGSSFRKIGNRRRQERFWYCRLALNHKVLHYGDLDDNPQGEVTFESLQEKIPVADIKAIVTGKDCPHMKEKSALKQNKEVLELAFSILYDPDETLNFIAPNKYEYCIWIDGLSALLGKDMSSELTKSDLDTLLSMEMKLRLLDLENIQIPEAPPPIPKEPSSYDFVYHYG", "sequence_length": 720, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cc894b13e3123dabb6583717e1bd6fe965c7a15a1ba4171112cd3df6833cb265", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96JJ3.json", "taxon_id": "9606", "uniprot_accession": "Q96JJ3", "uniprot_release": "2026_03" } ], "pfam_id": "PF11841", "short_name": "ELMO_ARM", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Clostridium botulinum (strain ATCC 19397 / Type A)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3362-pf11842.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3362-pf11842.yaml" } ], "pfam_ids": [ "PF04055", "PF08497", "PF11842" ], "protein_name": "UPF0313 protein CLB_0243", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNIDFLPISKEDLKKRNIDVLDFIIVTGDAYVDHPSFGTAIIGRVLEREGFTVGIIAQPNWNNIEDFKKLGKPKYGFLVNSGNIDSMVNHYTASKKKRHDDFYSPGGKSGYRPDRAVIVYCNKIKEAFKDSPIIIGGIEASLRRFAHYDYWDNSVRRSILEDSSADLLIYGMGEKPIVQVSNLLRYGMKIDSIKNVRGTTYIEKDISSLKDYIEIPSFEEVSTNKKSYAEAYKIQYYEQDSIRGKTLVQKHKERYVVQNPPQPPLSQEEMDEVYALPYARTYHPMYEAEGGIPAIKEVKFSITSHRGCYGSCSFCALTFHQGRVIQNRSQDSILKEANMMTNMKDFKGYIHDVGGPTANFRHRACKVQEKHGTCKNKQCVFPKACKNLIVDHKEYLSLLRKIRKIPNVKKVFIRSGIRFDYLMYDKNDEFFKELCEHHISGQLKVAPEHISDKVLNLMGKPTRNVYDSFVKKYYDINKKIHKNQFLVPYLMSSHPGSDLKAAIELAQYIKKMGYTPEQVQDFYPTPGSLSTTMYYTGINPLTEEKVYIPKDQKEKRMQRALLQFSIHDNYDLVKEALIKAHREDLIGNGPDCLIPYNKPYKKSHKKNNAKNNNNHYNKNNNYNKNKDISKKNKKNSLSKHKKRK", "sequence_length": 645, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a8f6b2a426fd666ee3ae5a4eb650390604ef2b6368819869f2940e1687fcea61", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A7FQL2.json", "taxon_id": "441770", "uniprot_accession": "A7FQL2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3362-pf11842.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3362-pf11842.yaml" } ], "pfam_ids": [ "PF08497", "PF11842" ], "protein_name": "UPF0313 protein UNCMA_01890", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKDELKALGWDRCDVVIVSGDAYVDHPSFGVAIIGRVLEKAGFRVGIIAQPDVTDKTSFSRLGEPRLCFCVTSGNVDSMVNNYTANKRLRSDDDYSPGNRPHMRPDRAVTVYCNKIRETYKTIPIITGGLEASLRRFAHYDYWDDKVRQSILADAPADMIVYGMGEKTIVDVVGRLKNGERIADITDIRGTTYKTRKIGDLSDFIELPDFKAVSTDKRAFAEAFKTFYDEQDPYYGHTLVQRHPKTIIVQNPPALPLTTAEMDAIYDLPYTRYPHPSYKEDIPALRTVRFSITSHRGCFGGCAFCAITAHQGRMIQSRSQESILREIRALTKLPEFKGTISDIGGPTADMYMLGCSKRSTQGMCRDKLCLYPEPCPNLNKDHSRLITLLNEVRKVPGVKNVFIGSGIRYDLAMQDEQYLYHICRQNVSGQLKVAPEHVSRNVTDAMCKPSIEAYDKFVSKYREINKELGKEQYIIPYFISAHPGCTLKDAIQLAEYVRDMGYYVEQVQDFTPTPSTLSTCMYYTGYNPYTGQEVYVPKSVEERRMYRALLQYKNPENYDLVKKALISANRKDLIGYGQNCLIKPVRPAIYKKPGRRKP", "sequence_length": 599, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9ef1cb99439db5af2d65ed087a7f55c2a948a4997292cebf790f2e36c594da47", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0W0L6.json", "taxon_id": "351160", "uniprot_accession": "Q0W0L6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3362-pf11842.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3362-pf11842.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q46861", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04055", "PF08497", "PF11842" ], "protein_name": "UPF0313 protein YgiQ", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e360c539576c0823183b94ec51b311fb0ddc37dff0ad8f6d0f5bdbd0cd41dace", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSSISLIQPDRDLFSWPQYWAACFGPAPFLPMSREEMDQLGWDSCDIILVTGDAYVDHPSFGMAICGRMLEAQGFRVGIIAQPDWSSKDDFMRLGKPNLFFGVTAGNMDSMINRYTADRRLRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILGGIEASLRRTAHYDYWSDTVRRSVLVDSKADMLMFGNGERPLVEVAHRLAMGEPISEIRDVRNTAIIVKEALPGWSGVDSTRLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKAVTVQPPRPKPWEKTYVLLPSFEKVKGDKVLYAHASRILHHETNPGCARALMQKHGDRYVWINPPAIPLSTEEMDSVFALPYKRVPHPAYGNARIPAYEMIRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANMYMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYDIAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLAKIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLVPAPTIEEMREARRQNRNTRPALTKHTPMATQRQTPATAKKASSTQSRPVNAGAKKRPKAAVGR", "sequence_length": 739, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e360c539576c0823183b94ec51b311fb0ddc37dff0ad8f6d0f5bdbd0cd41dace", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q46861.json", "taxon_id": "83333", "uniprot_accession": "Q46861", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/ygiq-family-radical-sam-protein-tigr03904.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR03904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/ygiq-family-radical-sam-protein-tigr03904.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/methylthiotransferase-conserved-site-ipr020612.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR020612", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/methylthiotransferase-conserved-site-ipr020612.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/upf0313-c-terminal-ipr024560.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024560", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/upf0313-c-terminal-ipr024560.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/upf0313-n-terminal-ipr013704.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR013704", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/upf0313-n-terminal-ipr013704.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/radical-sam-n-pf08497.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08497", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/radical-sam-n-pf08497.yaml" } ], "pfam_ids": [ "PF08497", "PF11842" ], "protein_name": "UPF0313 protein MJ1155", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFLPTTKEEMDEWGWEELDIIIVTGDAYIDHYLFGASVVGRYLVEHGYRVGIIAQPDWKNLDDIKRLGKPNYFFAVTAGNLDSMLAHYTPQKRLRDFDSMSNEGIRKRPDRATIVYTNLIKRAFKGVPIALGGIEASLRRFSHYDYWDNKVRKSVLIDSKADILMYGMGEKSILAITKALESGENIKDLEINGTVVRVNERKIGDIKERYETKELPSHEEVVNSKEKYAEMHRKLMTMDKVIYQKVGNQYLVQFPPIYLTEKEMDEIYEMPFERRAHPSYSYVPGIVPVQFSVVTHRGCFGGCSFCSILHHQGKVIQNRSERSILKEIRKLLNHEDFKGVIQDIGAPTANMYRMGCKKGLADRCPKNCLYPEPCENLIINHKPLIKLYRKIRDIVGDDVRVYVRSGVRYDLIMYDEEYGEDYIKELSKYHVSGRLKVAPEHISKKVCKAIQKPDGRLFKKFLEKYREIAEKVGGIKEVLPYWLIAHPNCSIKEMIELAEFIHKNNCYSRQVQVFTPTPMTLSTTMYHTGINPITNEKVYVPYTYREKKIQKAICLYREEENWEKALEGFKMVGYKGVIYRWIMEQMEKKKKQKKDKNKKNRLN", "sequence_length": 603, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fdc12a1cfdff889aa347cdbc5df21952f34788198ecf0630ee16540c7344c2ae", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58555.json", "taxon_id": "243232", "uniprot_accession": "Q58555", "uniprot_release": "2026_03" } ], "pfam_id": "PF11842", "short_name": "DUF3362", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11843", "short_name": "DUF3363", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Crocosphaera subtropica (strain ATCC 51142 / BH68)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3364-pf11844.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11844", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3364-pf11844.yaml" } ], "pfam_ids": [ "PF00148", "PF11844" ], "protein_name": "Nitrogenase molybdenum-iron protein beta chain", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQNVNNIKDHVDLFHQPEYQELFENKKQFEGMPTAEKVQEVAEWTKSWEYREKNFAREALTVNPAKACQPLGALLAAIGFEGTLPFVHGSQGCVAYFRTHLTRHFKEPVSAVSSSMTENAAVFGGLKNMVDGLQNSYALYKPKMIAVCTTCMAEVIGDDLGAFLGNARQDGVIPDDLPVPFAHTPSFVGSHITGYDSMMKSILSTLTEGKKKETTNGKINFIAGFETYIGNVRAIKNIISAFDLEGTLLSDTEMYLDSPNLGEFKMYHEGTSLEDAADSINAEATVTLQTYTTPKTREYIEKKWGQKTYTYRPWGVKGTDEFLMGLSELTGKPIPKEFEIARGRAVDAMTDTQAWVHGKRAAVYGDPDLVMGLLQFMLEMGIEPVHVLVNNSTKEFEEEAKALLAASPYGQQATVWGGKDLWHMRSLLFTEPVDFLVGNSYAKYLQRDTKTPLIRIGYPIFDRHHLHRYSTIGYEGAINLLNWIANGLMDELDRKTDTPSVTDISFDLVR", "sequence_length": 511, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7828775484ad4bc07bd399453028b5baf9481419d0e647646fa01ee339b65a58", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O07643.json", "taxon_id": "43989", "uniprot_accession": "O07643", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Azotobacter vinelandii", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3364-pf11844.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11844", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3364-pf11844.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/nitrogenase-1-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00699", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/nitrogenase-1-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/nitrogenase-1-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/nitrogenase-1-2.yaml" } ], "pfam_ids": [ "PF00148", "PF11844" ], "protein_name": "Nitrogenase molybdenum-iron protein beta chain", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQQVDKIKASYPLFLDQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREALTVNPAKACQPLGAVLCALGFEKTMPYVHGSQGCVAYFRSYFNRHFREPVSCVSDSMTEDAAVFGGQQNMKDGLQNCKATYKPDMIAVSTTCMAEVIGDDLNAFINNSKKEGFIPDEFPVPFAHTPSFVGSHVTGWDNMFEGIARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIKRMLSEMGVGYSLLSDPEEVLDTPADGQFRMYAGGTTQEEMKDAPNALNTVLLQPWHLEKTKKFVEGTWKHEVPKLNIPMGLDWTDEFLMKVSEISGQPIPASLTKERGRLVDMMTDSHTWLHGKRFALWGDPDFVMGLVKFLLELGCEPVHILCHNGNKRWKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFMIGNSYGKFIQRDTLHKGKEFEVPLIRIGFPIFDRHHLHRSTTLGYEGAMQILTTLVNSILERLDEETRGMQATDYNHDLVR", "sequence_length": 523, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "90d14f01041688fc46b92288b9762c0ede104bcf2ea9d941449a64cff1ac80df", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P07329.json", "taxon_id": "354", "uniprot_accession": "P07329", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Klebsiella pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3364-pf11844.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11844", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3364-pf11844.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/nitrogenase-1-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00699", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/nitrogenase-1-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/nitrogenase-1-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/nitrogenase-1-2.yaml" } ], "pfam_ids": [ "PF00148", "PF11844" ], "protein_name": "Nitrogenase molybdenum-iron protein beta chain", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQTIDKINSCYPLFEQDEYQELFRNKRQLEEAHDAQRVQEVFAWTTTAEYEALNFRREALTVDPAKACQPLGAVLCSLGFANTLPYVHGSQGCVAYFRTYFNRHFKEPIACVSDSMTEDAAVFGGNNNMNLGLQNASALYKPEIIAVSTTCMAEVIGDDLQAFIANAKKDGFVDSSIAVPHAHTPSFIGSHVTGWDNMFEGFAKTFTADYQGQPGKLPKLNLVTGFETYLGNFRVLKRMMEQMAVPCSLLSDPSEVLDTPADGHYRMYSGGTTQQEMKEAPDAIDTLLLQPWQLLKSKKVVQEMWNQPATEVAIPLGLAATDELLMTVSQLSGKPIADALTLERGRLVDMMLDSHTWLHGKKFGLYGDPDFVMGLTRFLLELGCEPTVILSHNANKRWQKAMNKMLDASPYGRDSEVFINCDLWHFRSLMFTRQPDFMIGNSYGKFIQRDTLAKGKAFEVPLIRLGFPLFDRHHLHRQTTWGYEGAMNIVTTLVNAVLEKLDSDTSQLGKTDYSFDLVR", "sequence_length": 520, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9464a349fe43a4957c0a499da91ca643e7ab7b3e0431dc0f1b984c0a3cbd75a5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P09772.json", "taxon_id": "573", "uniprot_accession": "P09772", "uniprot_release": "2026_03" } ], "pfam_id": "PF11844", "short_name": "DUF3364", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11845", "short_name": "Tll0287-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/wzy-c-2-pf11846.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/wzy-c-2-pf11846.yaml" } ], "pfam_ids": [ "PF04932", "PF11846", "PF15864" ], "protein_name": "ComP-specific O-oligosaccharyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSIFKKIKNYTIVSGVFFLGSAFIIPNTSNLSSTLYKELIAVLGLLILLTVKSFDYKKILIPKNFYWFLFVIFIIFIQLIVGEIYFFQDFFFSISFLVILFLSFLLGFNERLNGDDLIVKKIAWIFIIVVQISFLIAINQKIEIVQNFFLFSSSYNGRSTANLGQPNQFSTLILITLFLLCYLREKNSLNNMVFNILSFCLIFANVMTQSRSAWISVILISLLYLLKFQKKIELRRVIFFNIVFWTLVYCVPLLFNLIFFQKNSYSTFDRLTMGSSRFEIWPQLLKAVFHKPFIGYGWGQTGVAQLETINKSSTKGEWFTYSHNLFLDLMLWNGFFIGLIISILILCFLIELYSSIKNKSDLFLFFCVVAFFVHCLLEYPFAYTYFLIPVGFLCGYISTQNIKNSISYFNLSKRKLTLFLGCCWLGYVAFWVEVLDISKKNEIYARQFLFSNHVKFYNIENYILDGFSKQLDFQYLDYCELKDKYQLLDFKKVAYRYPNASIVYKYYSISAEMKMDQKSANQIIRAYSVIKNQKIIKPKLKFCSIEY", "sequence_length": 548, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d6a1c801e531c43f4110dd79d4902c1e4933d88046fc709c2533608883dc8ea3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6F7F9.json", "taxon_id": "62977", "uniprot_accession": "Q6F7F9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/wzy-c-2-pf11846.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/wzy-c-2-pf11846.yaml" } ], "pfam_ids": [ "PF04932", "PF11846" ], "protein_name": "General O-oligosaccharyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGSPRVYNSQHCGFSVAVMRFLLLLLTAVLISLAWLSPDHSYPWLTFASEMLSFAAFLSLLALFLNRPLELPRVQLLALPVVFIPMIQWGFGLVVDFSSALLSSAYLLGFWLTMLLGYNLSRSSADRERMFTLSSYLLFAVALLTSLIACIQWLNLESHVPGVMNLYSHRPYANFAQPNNMSTFLILGLLGCLYLAEKQKLKQYYIWPVAALIVFAITLSQSRTAWVFGLFFIIYWTYKSWRYPTHLKRYAVLLWAIGFFAVGLLFPRFTRLIQKLKEGNVVQTSSVVERASAGHERLGIWQQMLDAIHQKPWTGYGWNQTSIAELSSMSSNTIHVWFTSAHNVVLDLLVWNGWLLGGLITICILIWICWLNVHAKTTESIIACLMVSAVWIHTLLEYPLQYAYFLLPVGFLMGLIQAQTPDQTARSVPVSVIRSIWVIGIMLLALIWRDYNLYKVNSLRILKNQPANIEIWGSSKILVLTEFDQRLYWLKLSPVAPLTSTELDQIEKMVQNKATPYNLQKYAQLLLANHQFEKAQQQIAYLNRLHKKDYTLQDLQQANASAVESSK", "sequence_length": 568, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1e972c5741bff1e84e7a99656c99eeb1ea672f1bf40a355ea64f092710d2018a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6FFS6.json", "taxon_id": "62977", "uniprot_accession": "Q6FFS6", "uniprot_release": "2026_03" } ], "pfam_id": "PF11846", "short_name": "Wzy_C_2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm-aftd-pf24607.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24607", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm-aftd-pf24607.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gt-c-aftd-pf11847.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11847", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gt-c-aftd-pf11847.yaml" } ], "pfam_ids": [ "PF11847", "PF24607" ], "protein_name": "Alpha-(1->3)-arabinofuranosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVAAATLVLTFAQSPGQISPDTKLDLTANPLRFLARAFNLWNSDLPFGQAQNQAYGYLFPHGTFFLLGDVLGVPGWVTQRLWWALLLTVGFWGVLRVAEALGIGSTPSRLIGAAAFALSPRVLTTLGAISSETLPMMLAPWVLLPVILALRGQHSVRLMAARSAGAVALMGAVNAVATLTGCLAAVIWWACHRPNRLWWRFTAWWLLCGALAVTWWVVALLMLGRISPPFLDFIESSGVTTQWMSLTEMLRGTMSWTPFVAPSATAGASLVTSTTAVLATTVVAAAGLAGLALRTMPARGRLITMLLIGVVLLGLGYSGGLGSPVALQVQAFLDGSGTPLRNLAKLEPVIRLPLALGLVHLLGRIPLPGSAPRAVWVSAFAHPERDKRVAVAIVVLSALAAGTSLAWTARLTPPGSFTAIPQHWHDAAAWLDEHNTDRGRVLVAPGAPFATQVWGNSHDEPLQVLGDNPWGVRDSIPLTPPETIRALDSVQRLFASGRPSPGLADTLARQGISYVVVRNDLDPDTSRSARPILVHRAVEGSPGLTKVAEFGDPVGPGTLEGFVADSGLRPRYPAVEIFRVEPADAGSSQQRSPMHPYLVDSDAMTRVAGAPEALLRLDERRRLNGEPPLGPMLLAADARRAGLPVDGVIVTDTPTAREIDYGRVDDHASAIRTPDDARHTYNRVPDYPSDGADLVYGKWTGGRLSVSSSAADSTALPYVAPATGPAAAIDSDSSTAWVSNALQAAVGQWLQVDFDHPVTNATLTITPSATAVGAQVRRIEIATATGTSSLRFDTAGKPLTIPLPVGETPWVRVTAVATDDGSPGVQFGVTDLAITQYDASGFAHPVTLRHTVEVPGPPAGSVVQQWDLGTELLGRPGCADSPVGVRCAAAMALASEEPVNLSRTLTVPQDTEVQPTVWIRGRQGPNLADLVAQPDTTRAFGDSDPIDVLGSAYAATDGDPRTSWTAPQRVVQFQTPPTLTLKLPRPTEVSGMRIVPGDTEPPAHPTLVAIDLGDGPQMHRLPADGEPRTVTLKPRVTDTVTVSLLAWNDIIDRTSLGFDQLKPPGLAELTVLDGRGAPVGAADAAKNRSRAVALPCGQGPIIAVAGQFIQTSVHTTVGALLDGEPIPARPCRSEPVKLPAGQQELVVSPGAAFIVDGVELPTPAADEIRSAPTTSAETGTWTADRREVRVSAAAQQRVLVVPESVNRGWSAHDPAGAELQSVTVNGWQQGWVVPAGTEGTVTLTFASNMPYRVGLIGGLALLPLLALLALIPVRRPVRAAAPARPWNPGPVLTGAAALVAGTAISGVAGLLVVGAAMGVRILLNRRGAAGEKVWDNVTVVVAAGGLILAGSVLSQYPWRSVDGYVGHTPGVQFLALLSVAFLAASAVRLVNRPEPSEDGRSAKPEHTGASAHAG", "sequence_length": 1414, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2ffa108d415fc92d5a45c7f98d222c358df8292f7f3845f7a568a3cba58eb911", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0QPD4.json", "taxon_id": "246196", "uniprot_accession": "A0QPD4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm-aftd-pf24607.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24607", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm-aftd-pf24607.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gt-c-aftd-pf11847.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11847", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gt-c-aftd-pf11847.yaml" } ], "pfam_ids": [ "PF11847", "PF24607" ], "protein_name": "Alpha-(1->3)-arabinofuranosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPLSRKWLPVVGAVALALTFAQSPGQVSPDTKLDLTANPLRFLARATNLWNSDLPFGQAQNQAYGYLFPHGTFFVIGHLLGVPGWVTQRLWWAVLLTVGFWGLLRVAEALGVGGPSSRVVGAVAFALSPRVLTTLGSISSETLPMMLAPWVLLPTILALRGTSGRSVRALAAQAGLAVALMGAVNAIATLAGCLPAVIWWACHRPNRLWWRYTAWWLLAMALATLWWVMALTQLHGVSPPFLDFIESSGVTTQWSSLVEVLRGTDSWTPFVAPNATAGAPLVTGSAAILGTCLVAAAGLAGLTSPAMPARGRLVTMLLVGVVLLAVGHRGGLASPVAHPVQAFLDAAGTPLRNVHKVGPVIRLPLVLGLAQLLSRVPLPGSAPRPAWLRAFAHPERDKRVAVAVVALTALMVSTSLAWTGRVAPPGTFGALPQYWQEAADWLRTHHAATPTPGRVLVVPGAPFATQVWGTSHDEPLQVLGDGPWGVRDSIPLTPPQTIRALDSVQRLFAAGRPSAGLADTLARQGISYVLVRNDLDPETSRSARPILLHRSIAGSPGLAKLAEFGAPVGPDPLAGFVNDSGLRPRYPAIEIYRVSAPANPGAPYFAATDQLARVDGGPEVLLRLDERRRLQGQPPLGPVLMTADARAAGLPVPQVAVTDTPVARETDYGRVDHHSSAIRAPGDARHTYNRVPDYPVPGAEPVVGGWTGGRITVSSSSADATAMPDVAPASAPAAAVDGDPATAWVSNALQAAVGQWLQVDFDRPVTNAVVTLTPSATAVGAQVRRILIETVNGSTTLRFDEAGKPLTAALPYGETPWVRFTAAATDDGSAGVQFGITDLAITQYDASGFAHPVQLRHTVLVPGPPPGSAIAGWDLGSELLGRPGCAPGPDGVRCAASMALAPEEPANLSRTLTVPRPVSVTPMVWVRPRQGPKLADLIAAPSTTRASGDSDLVDILGSAYAAADGDPATAWTAPQRVVQHKTPPTLTLTLPRPTVVTGLRLAASRSMLPAHPTVVAINLGDGPQVRQLQVGELTTLWLHPRVTDTVSVSLLDWDDVIDRNALGFDQLKPPGLAEVVVLSAGGAPIAPADAARNRARALTVDCDHGPVVAVAGRFVHTSIRTTVGALLDGEPVAALPCEREPIALPAGQQELLISPGAAFVVDGAQLSTPGAGLSSATVTSAETGAWGPTHREVRVPESATSRVLVVPESINSGWVARTSTGARLTPIAVNGWQQAWVVPAGNPGTITLTFAPNSLYRASLAIGLALLPLLALLAFWRTGRRQLADRPTPPWRPGAWAAAGVLAAGAVIASIAGVMVMGTALGVRYALRRRERLRDRVTVGLAAGGLILAGAALSRHPWRSVDGYAGNWASVQLLALISVSVVAASVVATSESRGQDRMQ", "sequence_length": 1400, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4ca70d9e09f8bb948b8b6be019c92d2b1064ade344900f51b495db1a96a08d28", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P96419.json", "taxon_id": "83332", "uniprot_accession": "P96419", "uniprot_release": "2026_03" } ], "pfam_id": "PF11847", "short_name": "GT-C_AftD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11848", "short_name": "DUF3368", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3369-pf11849.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3369-pf11849.yaml" } ], "pfam_ids": [ "PF11849", "PF13487" ], "protein_name": "3'3'-cGAMP-specific phosphodiesterase 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKWFKYGDGMDLFADMRQEAAGEKERVVMHSQEPWCVLLVDDDEQMHQITRLALTGFKFQNRPLELISVLSGLEARKVMAERSDIALALVDVVMETEHAGLDLVRYIREELQNRQVRLVLRTGQAGQAPEDRVIKEYEIDDYKEKTELTTQKLRTLLYSMLRAYRDLCLIEDQKLGLSHVIEASANVQNTKSLQSYATAVLNQLTSLLKLHASAFYCVATPCPDSEKCNALTVATTAERVELYVESPFKGLPEDVQRRCKEVLSQRTTRDYGDAYVFFKQDERGVDSVLYVGFEQELSELDRKLLEIYMYNIGLTFENINLMVDLRETSKELVYNLANAVEARSRETGAHVQRVALYCERLAHLYGLAESEADMIKNASPLHDVGKVAIPDSILHKPGKLDAQEWAIMQKHVEYGVEILNRSKRRLMQVAKEIAATHHEKWDGSGYPNRLQGDDIPISGRITAIADVFDALGAKRSYKDPWTDEQIREELMAQKGRHFEPKLVELLLEHWDEFIAIRASLPD", "sequence_length": 522, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "92cf65365b8399c72142caf9a995c064a1a9792df0f0f6c65c1e8abcf7b78d31", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9KMV8.json", "taxon_id": "243277", "uniprot_accession": "Q9KMV8", "uniprot_release": "2026_03" } ], "pfam_id": "PF11849", "short_name": "DUF3369", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11850", "short_name": "DUF3370", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/basic-helix-loop-helix-zipper-bhlhzip-domain-found-in-transcription-fa-cd18925.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd18925", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/basic-helix-loop-helix-zipper-bhlhzip-domain-found-in-transcription-fa-cd18925.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mit-tfe-transcription-factors-c-terminal-ipr021802.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021802", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mit-tfe-transcription-factors-c-terminal-ipr021802.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3371-pf11851.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11851", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3371-pf11851.yaml" } ], "pfam_ids": [ "PF00010", "PF11851" ], "protein_name": "Transcription factor EC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLDHQIINPTLKWSQPAVPSGGPLVQHAHTTLDSDAGLTENPLTKLLAIGKEDDNAQWHMEDVIEDIIGMESSFKEEGADSPLLMQRTLSGSILDVYSGEQGISPINMGLTSASCPSSLPMKREITETDTRALAKERQKKDNHNLIERRRRYNINYRIKELGTLIPKSNDPDMRWNKGTILKASVEYIKWLQKEQQRARELEHRQKKLEQANRRLLLRIQELEIQARTHGLPTLASLGTVDLGAHVTKQQSHPEQNSVDYCQQLTVSQGPSPELCDQAIAFSDPLSYFTDLSFSAALKEEQRLDGMLLDDTISPFGTDPLLSATSPAVSKESSRRSSFSSDDGDEL", "sequence_length": 347, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1ae75639ad6e0ba71a069a683779fbbc3b233e237497f92ce385ba86dc195b66", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O14948.json", "taxon_id": "9606", "uniprot_accession": "O14948", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-rna-biosynthetic-process-go2001141.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2001141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-rna-biosynthetic-process-go2001141.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/basic-helix-loop-helix-zipper-bhlhzip-domain-found-in-microphthalmia-a-cd18926.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd18926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/basic-helix-loop-helix-zipper-bhlhzip-domain-found-in-microphthalmia-a-cd18926.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mit-tfe-transcription-factors-c-terminal-ipr021802.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021802", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mit-tfe-transcription-factors-c-terminal-ipr021802.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mit-tfe-transcription-factors-n-terminal-ipr031867.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mit-tfe-transcription-factors-n-terminal-ipr031867.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3371-pf11851.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11851", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3371-pf11851.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mitf-tfeb-c-3-n-pf15951.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mitf-tfeb-c-3-n-pf15951.yaml" } ], "pfam_ids": [ "PF00010", "PF11851", "PF15951" ], "protein_name": "Microphthalmia-associated transcription factor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQSESGIVPDFEVGEEFHEEPKTYYELKSQPLKSSSSAEHPGASKPPISSSSMTSRILLRQQLMREQMQEQERREQQQKLQAAQFMQQRVPVSQTPAINVSVPTTLPSATQVPMEVLKVQTHLENPTKYHIQQAQRQQVKQYLSTTLANKHANQVLSLPCPNQPGDHVMPPVPGSSAPNSPMAMLTLNSNCEKEGFYKFEEQNRAESECPGMNTHSRASCMQMDDVIDDIISLESSYNEEILGLMDPALQMANTLPVSGNLIDLYGNQGLPPPGLTISNSCPANLPNIKRELTACIFPTESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKELENRQKKLEHANRHLLLRIQELEMQARAHGLSLIPSTGLCSPDLVNRIIKQEPVLENCSQDLLQHHADLTCTTTLDLTDGTITFNNNLGTGTEANQAYSVPTKMGSKLEDILMDDTLSPVGVTDPLLSSVSPGASKTSSRRSSMSMEETEHTC", "sequence_length": 526, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8000e301e1663c2a2550fdfbbf5fc7e430286d10caee820983053964100a5ec2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O75030.json", "taxon_id": "9606", "uniprot_accession": "O75030", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-lysosome-organization-go1905671.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905671", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-lysosome-organization-go1905671.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/basic-helix-loop-helix-zipper-bhlhzip-domain-found-in-transcription-fa-cd18927.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd18927", "section": "canonical_examples", "url": 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"data/traits/sequence/family/pfam/mitf-tfeb-c-3-n-pf15951.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mitf-tfeb-c-3-n-pf15951.yaml" } ], "pfam_ids": [ "PF00010", "PF11851", "PF15951" ], "protein_name": "Transcription factor EB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASRIGLRMQLMREQAQQEEQRERMQQQAVMHYMQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQKVREYLSETYGNKFAAHVSPAQGSPKPAPAASPGVRAGHVLSTSAGNSAPNSPMAMLHISSNPEKEFDDVIDNIMRLDSVLGYINPEMQMPNTLPLSSSHLNVYSGDPQVTASMVGVTSSSCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDVRWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPTTSPSGVNMAELAQQVVKQELPSEDGPGEALMLGPEVPEPEQMPALPPQAPLPSAAQPQSPFHHLDFSHGLSFGGGGDEGPTGYPDTLGTEHGSPFPNLSKKDLDLMLLDDSLLPLASDPLFSTMSPEASKASSRRSSFSMEEGDVL", "sequence_length": 475, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b12a0493f525bd73e1c4725199a01341b461a515d6f4c0a84c80ee25c014feca", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9R210.json", "taxon_id": "10090", "uniprot_accession": "Q9R210", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/basic-helix-loop-helix-zipper-bhlhzip-domain-found-in-microphthalmia-a-cd18926.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd18926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/basic-helix-loop-helix-zipper-bhlhzip-domain-found-in-microphthalmia-a-cd18926.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mit-tfe-transcription-factors-c-terminal-ipr021802.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021802", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mit-tfe-transcription-factors-c-terminal-ipr021802.yaml" } ], "pfam_ids": [ "PF00010", "PF11851" ], "protein_name": "Transcription factor EC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTFDCRVCDQTLKRAQPPAASCMPLAEHEPMSPDSDAGCAGNPFTNLLALGKKDGAEKWHLSGSILDVYSDEQGISSANAGLTDAPCPSILPMRKEIAETDGRALAKERQKKDNHNLIERRRRYNINYRIKELGTLIPKSNDPDMRWNKGTILKASVDYIKWLQKEQQRARELEHRQKKLEHANRQLRLRIQELEIQARAHGLPILASLGTADVGTHITKQQTHPERNLGGCCLQLTPTQGTSPEFYEQAVAFSDPLSHFTDLSFSAALKEEQRLDGMLLSDTICPFGTDPLLSAISPAVSKASSRSSLSSEDGDEL", "sequence_length": 317, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea7b792cf1fe6969cf1a0e4cdabb8dda4e72662837730a64beed04dc2fa3041c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9WTW4.json", "taxon_id": "10090", "uniprot_accession": "Q9WTW4", "uniprot_release": "2026_03" } ], "pfam_id": "PF11851", "short_name": "DUF3371", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pullul-strch-c-pf11852.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11852", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pullul-strch-c-pf11852.yaml" } ], "pfam_ids": [ "PF02922", "PF11852", "PF17967" ], "protein_name": "Pullulanase 1, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALTLTPTSSVHLLSSISVARPRIFAADFNLRSRWRRRRPVTSISNFRLRLPSKTSLHCLCSSSSASSPMSLEVSSPNSQFLDCLIYSRAYWVTQGVIAWNVDVGEGSCYFYASKSAGLSFSEDGIDGYDLRIKLEAESGSLPADVIEKFPHIRNYKSFKVPKDLDIRDLVKSQLAVVCFDAEGRLIQGTGLQLPGVLDELFSYDGPLGAHFTPEGVSLHLWAPTAQAVSVCIYKNPLDKSPMEICPLKEANGVWSTEGACSWGGCYYVYKVSVYHPSTMKLETCYANDPYARGLSADGRKTFLVNLDSDDLKPEGWDNLADKKPCLRSFSDISIYELHVRDFSANDETVEPENRGGYLAFTSKDSAGVKHLQKLVDAGLTHLHLLPTFQFGDVDDEKENWKSVDTSLLEGLRPDSTEAQARITEIQNDDGYNWGYNPVLWGVPKGSYASDPTGPCRIIEFRKMVQALNCTGLNVVLDVVYNHLHASGPHDKESVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIRDDLLNWVVNYKVDGFRFDLMGHIMKATIVNAKSAIGSLRKETDGVDGSRIYLYGEGWNFGEVAENGRGINASQFNLGGTGIGSFNDRIRDATLGGSPFGHPLQQGFITGLLLQPNAHDHGSEATQELMLSTAKNHIQTGMAANLKDYMLTNHEGKEVKGSEVLMHDATPVAYASLPTETINYVSAHDNETLFDIISLKTPMEISVDERCRINHLASSMIALSQGIPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYSSNNWGVGLPPKGKNEHNWPLIKPRLQDPSFKPKSSHIVATLHNFLDLLRIRYSSPLFRLDTARAIQERVRFHNTGPSSIPGAIVMSIEDGHRGIPSVSQIDPIYSLIVVIFNARPSEFSYPSPALKDRKLELHPVQVMSADEIVKKSVYDSFSGGFTVPARTTTVFVESRNG", "sequence_length": 965, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f1abed568244e85bf5e5f2faf0aefdeeaed5e84b24a2a3c2aaa04ace2ebdf12d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8GTR4.json", "taxon_id": "3702", "uniprot_accession": "Q8GTR4", "uniprot_release": "2026_03" } ], "pfam_id": "PF11852", "short_name": "Pullul_strch_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11853", "short_name": "DUF3373", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11854", "short_name": "MtrB_PioB", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3375-pf11855.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11855", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3375-pf11855.yaml" } ], "pfam_ids": [ "PF11855" ], "protein_name": "Uncharacterized protein MSMEG_1279/MSMEI_1241", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDYDAITALRDRHPAWRLLRAGNASLVLSFLGEFFVEANRGACPAGQVAEALDNHLYALSAGSGESRYPKEPRAYLEDWAATDAGYLRRFYPPGDDEVHYEVTPAFEKAYAWVVNLQSRSFVGTESRLHTVVALLRQIVHGTEVQPDVRLAELRRRRAELEAEIAAVEAGDIAVLDPTAVRDRYQQLSTTARELLSDFREVEENFRLLDRAARERIAAWEGSKGGLLEELVGSRSEITGSDQGRSFQAFYDFLLSEQRQAELAELIAKVSALDVLEADPRIRRIHHDWSEAADRAQRTVRQISEQLRRFLDDQVWLENRRVLDLVRAVESIALEVRDAPPTFGLEVDEPGIEIALPFERPLYQPPTEVAVESHVSAATEEVNADLLFAQTYIDQARLADTIRAVLPEDSSALLSDVVAVHPIEQGAAEIVGYLALNEDDLAIDVDDTEETVLEYPDPADPDITKRARLPKVTVRRR", "sequence_length": 476, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8fc5606c7e85eb270a6583e641e34ce81d92e78ad61f5562c2a4e07df92845cb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0QRY1.json", "taxon_id": "246196", "uniprot_accession": "A0QRY1", "uniprot_release": "2026_03" } ], "pfam_id": "PF11855", "short_name": "DUF3375", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3376-pf11856.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11856", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3376-pf11856.yaml" } ], "pfam_ids": [ "PF01734", "PF11856" ], "protein_name": "Uncharacterized membrane protein Rv3479", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFPAAVGVLWQSGLRDPTPPGGPHGIEGLSLAFEKPSPVTALTQELRFATTMTGGVSLAIWMAGVTREINLLAQASQWRRLGGTFPTNSQLTNESAASLRLYAQLIDLLDMVVDVDILSGTSAGGINAALLASSRVTGSDLGGIRDLWLDLGALTELLRDPRDKKTPSLLYGDERIFAALAKRLPKLATGPFPPTTFPEAARTPSTTLYITTTLLAGETSRFTDSFGTLVQDVDLRGLFTFTETDLARPDTAPALALAARSSASFPLAFEPSFLPFTKGTAKKGEVPARPAMAPFTSLTRPHWVSDGGLLDNRPIGVLFKRIFDRPARRPVRRVLLFVVPSSGPAPDPMHEPPPDNVDEPLGLIDGLLKGLAAVTTQSIAADLRAIRAHQDCMEARTDAKLRLAELAATLRNGTRLLTPSLLTDYRTREATKQAQTLTSALLRRLSTCPPESGPATESLPKSWSAELTVGGDADKVCRQQITATILLSWSQPTAQPLPQSPAELARFGQPAYDLAKGCALTVIRAAFQLARSDADIAALAEVTEAIHRAWRPTASSDLSVLVRTMCSRPAIRQGSLENAADQLAADYLQQSTVPGDAWERLGAALVNAYPTLTQLAASASADSGAPTDSLLARDHVAAGQLETYLSYLGTYPGRADDSRDAPTMAWKLFDLATTQRAMLPADAEIEQGLELVQVSADTRSLLAPDWQTAQQKLTGMRLHHFGAFYKRSWRANDWMWGRLDGAGWLVHVLLDPRRVRWIVGERADTNGPQSGAQWFLGKLKELGAPDFPSPGYPLPAVGGGPAQHLTEDMLLDELGFLDDPAKPLPASIPWTALWLSQAWQQRVLEEELDGLANTVLDPQPGKLPDWSPTSSRTWATKVLAAHPGDAKYALLNENPIAGETFASDKGSPLMAHTVAKAAATAAGAAGSVRQLPSVLKPPLITLRTLTLSGYRVVSLTKGIARSTIIAGALLLVLGVAAAIQSVTVFGVTGLIAAGTGGLLVVLGTWQVSGRLLFALLSFSVVGAVLALATPVVREWLFGTQQQPGWVGTHAYWLGAQWWHPLVVVGLIALVAIMIAAATPGRR", "sequence_length": 1082, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0fae6d09ff7dd20451b58655d5cab7d8e3955b997e333bbb1fdced8d87503894", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/O06342.json", "taxon_id": "83332", "uniprot_accession": "O06342", "uniprot_release": "2026_03" } ], "pfam_id": "PF11856", "short_name": "DUF3376", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3377-pf11857.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11857", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3377-pf11857.yaml" } ], "pfam_ids": [ "PF00045", "PF00413", "PF01471", "PF11857" ], "protein_name": "Matrix metalloproteinase-14", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSPAPRPPRCLLLPLLTLGTALASLGSAQSSSFSPEAWLQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDKFGAEIKANVRRKRYAIQGLKWQHNEITFCIQNYTPKVGEYATYEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPFYQWMDTENFVLPDDDRRGIQQLYGGESGFPTKMPPQPRTTSRPSVPDKPKNPTYGPNICDGNFDTVAMLRGEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASINTAYERKDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGNKYYRFNEELRAVDSEYPKNIKVWEGIPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKLKVEPGYPKSALRDWMGCPSGGRPDEGTEEETEVIIIEVDEEGGGAVSAAAVVLPVLLLLLVLAVGLAVFFFRRHGTPRRLLYCQRSLLDKV", "sequence_length": 582, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f83c7ecb5c2eb7ffdf8d83f1de9543d8039381909ba6a87fdca0898eb47e260", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P50281.json", "taxon_id": "9606", "uniprot_accession": "P50281", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3377-pf11857.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11857", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3377-pf11857.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/cysteine-switch.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00546", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/cysteine-switch.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/hemopexin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00024", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/hemopexin.yaml" } ], "pfam_ids": [ "PF00045", "PF00413", "PF01471", "PF11857" ], "protein_name": "Matrix metalloproteinase-16", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MILLTFSTGRRLDFVHHSGVFFLQTLLWILCATVCGTEQYFNVEVWLQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQTRGSSKFHIRRKRYALTGQKWQHKHITYSIKNVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSNDPTAIMAPFYQYMETDNFKLPNDDLQGIQKIYGPPDKIPPPTRPLPTVPPHRSIPPADPRKNDRPKPPRPPTGRPSYPGAKPNICDGNFNTLAILRREMFVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPPSIDAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDVGKTYFFKGDRYWRYSEEMKTMDPGYPKPITVWKGIPESPQGAFVHKENGFTYFYKGKEYWKFNNQILKVEPGYPRSILKDFMGCDGPTDRVKEGHSPPDDVDIVIKLDNTASTVKAIAIVIPCILALCLLVLVYTVFQFKRKGTPRHILYCKRSMQEWV", "sequence_length": 607, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60734caf277ee1c63cee40a2b6a9075a2c137146553f10c3f227594c6e3500fc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P51512.json", "taxon_id": "9606", "uniprot_accession": "P51512", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3377-pf11857.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11857", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3377-pf11857.yaml" } ], "pfam_ids": [ "PF00045", "PF00413", "PF01471", "PF11857" ], "protein_name": "Matrix metalloproteinase-24", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"MNIVLKLSSNACQQLSEKYKSYEQTSKNPYIRFFAKVGKTSISVYTSGKVVFQGSDAEKIASEFGHVAQVVPKKQTNLIGTDEVGNGSYFGGLMVTASFVSDNHLKFLKEMGVADSKKLTDEKICQIAPKLIEEIPHVALVVEPEKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGSQPESIVIDAFTTEANYKKYVSAEKNHPLTNITLLTKAEDQFLAVAVSSIISRYKFLENLKKLSKESGFTLPSGAGNLSDKVAAQIIKSKGIDALNHLAKLHFANTQKAMKIAQL", "sequence_length": 292, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0e920606612df6c5c7ae47bf88f4a009e0ec9e759d00b1dc6d142e5d08584a37", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2RP65.json", "taxon_id": "416870", "uniprot_accession": "A2RP65", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain Mu3 / ATCC 700698)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3378-pf11858.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11858", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3378-pf11858.yaml" } ], "pfam_ids": [ "PF01351", "PF11858" ], "protein_name": "Ribonuclease HIII", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANIVFKLSDKDITTLMSRITFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAVSKELLPQHSQLNTNKTKKKNMANSSLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVAFIPHSLLTLHNDKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQISKYINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFKNREKAQKILKPL", "sequence_length": 312, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "982e25ceeb692639a27a4b46b4658786d6cb3b44f2911a1a07da5c2ffbde4a9d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A7X163.json", "taxon_id": "418127", "uniprot_accession": "A7X163", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3378-pf11858.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11858", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3378-pf11858.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P94541", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01351", "PF11858" ], "protein_name": "Ribonuclease HIII", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4f39986a42cc443f076c7f92da97f0f0cca249b8fd988788469e26db3353e515", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", 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"discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11860", "short_name": "Muramidase", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/rrna-guanine-methyltransferase-activity-go0016435.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016435", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/rrna-guanine-methyltransferase-activity-go0016435.yaml" }, { 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"canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/rrna-uridine-2-o-ribose-methyltransferase-activity-go0008650.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ribosomal-rna-methyltransferase-spb1-domain-of-unknown-function-duf338-ipr024576.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024576", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ribosomal-rna-methyltransferase-spb1-domain-of-unknown-function-duf338-ipr024576.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3381-pf11861.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/spb1-c-pf07780.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07780", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/spb1-c-pf07780.yaml" } ], "pfam_ids": [ "PF01728", "PF07780", "PF11861" ], "protein_name": "27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/rapgap.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50085", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/rapgap.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/rap-ran-gap-3-40-50-11210.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.50.11210", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/rap-ran-gap-3-40-50-11210.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P49815", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02145", "PF03542", "PF11864" ], "protein_name": "Tuberin", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6c6795ffc0f62a83401b3f75c82c49bdd4e0f17500834047f393531c2a00b402", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": 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"PF11864" ], "protein_name": "Tuberin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKPTSKDSGLKEKFKILLGLGTSRPNPRCAEGKQTEFIITSEILRELSGECGLNNRIRMIGQICDVAKTKKLEEHAVEALWKAVSDLLQPERPPEARHAVLTLLKAIVQGQGDRLGVLRALFFKVIKDYPSNEDLHERLEVFKALTDNGRHITYLEEELAEFVLQWMDVGLSSEFLLVLVNLVKFNSCYLDEYIASMVHMICLLCIRTVSSVDIEVSLQVLDAVVCYNCLPAESLPLFIITLCRTINVKELCEPCWKLMRNLLGTHLGHSAIYNMCRIMEDRSYMEDAPLLRGAVFFVGMALWGAHRLYSLKNSPTSVLPSFYEAMTCPNEVVSYEIVLSITRLIKKYRKELQAVTWDILLDIIERLLQQLQNLDSPELKTIVHDLLTTVEELCDQNEFHGSQERYYELVESYADQRPESSLLNLISYRAQSIHPAKDGWIQNLQLLMERFFRNECRSAVAIKVLDVLSFVLLIIRQFYEEELINSVVISQLSHIPEDKDHQVRKLATQLLVDLAEGCHTHHFNSLLDIIEKVMARSLSPPPELEERDLAVHSASLEDVKTAVLGLLVILQTKLYTLPASHATRVYESLISHIQLHYKHGYSLPIASSIRLQAFDFLLLLRADSLHRLGLPNKDGVVRFSPYCLCDCMELDRASEKKASGPLSPPTGPPSPVPMGPAVRLGYLPYSLLFRVLLQCLKQESDWKVLKLVLSRLPESLRYKVLIFTSPCSVDQLSSALCSMLSAPKTLERLRGTPEGFSRTDLHLAVVPVLTALISYHNYLDKTRQREMVYCLEQGLIYRCASQCVVALAICSVEMPDIIIKALPVLVVKLTHISATASMAIPLLEFLSTLARLPHLYRNFVPEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFIRCRLPFRKDFVPYITKGLRSNVLLSFDDTPEKDSFRARSTSLNERPKSLRIARAPKQGLNNSPPVKEFKESCAAEAFRCRSISVSEHVVRSRIQTSLTSASLGSADENSMAQADDNLKNLHLELTETCLDMMARYVFSNFTAVPKRSPVGEFLLAGGRTKTWLVGNKLVTVTTSVGTGTRSLLGLDSGDLQGGSDSSSDPSTHVRQTKEAPAKLESQAGQQVSRGARDRVRSMSGGHGLRVGVLDTSAPYSPGGSASLGPQTAVAAKPEKPPAGAQLPTAEKTNLAAYVPLLTQGWAEILVRRPTGNTSWLMSLENPLSPFSSDINNMPLQELSNALMAAERFKEHGHAPVQVIVSATGCTAKPPTLPRSNTVASFSSLYQPSCQGQLHRSVSWADSAMVLEEGSPGETQVPVEPPELEDFEAALGTDRHCQRPDTYSRSSSASSQEEKSHLEELAAGGIPIERAISSEGARPAVDLSFQPSQPLSKSSSSPELQTLQDILGDLGDKIDIGRLSPEAKVRSQSGILDGEAATWSATGEESRITVPPEGPLPSSSPRSPSGLRPRGYTISDSAPSRRGKRVERDNFKSRAAASSAEKVPGINPSFVFLQLYHSPFFGDESNKPILLPNESFERSVQLLDQIPSYDTHKIAVLYVGEGQSSSELAILSNEHGSYRYTEFLTGLGRLIELKDCQPDKVYLGGLDVCGEDGQFTYCWHDDIMQAVFHIATLMPTKDVDKHRCDKKRHLGNDFVSIIYNDSGEDFKLGTIKQGQFNFVHVIITPLDYKCNLLTLQCRKDGPACKCEWWRQPGEIVVWALPVVMELTVTILLCHLQMASQVHHSRSNPTDIYPSKWIARLRHIKRLRQRIREEVHYSNPSLPLMHPPAHTKAPAQAPEATPTYETGQRKRLISSVDDFTEFV", "sequence_length": 1814, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6be48d43a9fe8a8ee297e7c666defa030af59a6f27126a3a500a02b91fe76593", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q61037.json", "taxon_id": "10090", "uniprot_accession": "Q61037", "uniprot_release": "2026_03" } ], "pfam_id": "PF11864", "short_name": "DUF3384", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P32600", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00454", "PF02259", "PF02260", "PF08771", "PF11865", "PF23593" ], "protein_name": "Serine/threonine-protein kinase TOR2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "719df4401f38a8e0bd304e2e27d173aeeb0f33051da0a0c5544c7c43d5bdec25", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNKYINKYTTPPNLLSLRQRAEGKHRTRKKLTHKSHSHDDEMSTTSNTDSNHNGPNDSGRVITGSAGHIGKISFVDSELDTTFSTLNLIFDKLKSDVPQERASGANELSTTLTSLAREVSAEQFQRFSNSLNNKIFELIHGFTSSEKIGGILAVDTLISFYLSTEELPNQTSRLANYLRVLIPSSDIEVMRLAANTLGRLTVPGGTLTSDFVEFEVRTCIDWLTLTADNNSSSSKLEYRRHAALLIIKALADNSPYLLYPYVNSILDNIWVPLRDAKLIIRLDAAVALGKCLTIIQDRDPALGKQWFQRLFQGCTHGLSLNTNDSVHATLLVFRELLSLKAPYLRDKYDDIYKSTMKYKEYKFDVIRREVYAILPLLAAFDPAIFTKKYLDRIMVHYLRYLKNIDMNAANNSDKPFILVSIGDIAFEVGSSISPYMTLILDNIREGLRTKFKVRKQFEKDLFYCIGKLACALGPAFAKHLNKDLLNLMLNCPMSDHMQETLMILNEKIPSLESTVNSRILNLLSISLSGEKFIQSNQYDFNNQFSIEKARKSRNQSFMKKTGESNDDITDAQILIQCFKMLQLIHHQYSLTEFVRLITISYIEHEDSSVRKLAALTSCDLFIKDDICKQTSVHALHSVSEVLSKLLMIAITDPVAEIRLEILQHLGSNFDPQLAQPDNLRLLFMALNDEIFGIQLEAIKIIGRLSSVNPAYVVPSLRKTLLELLTQLKFSNMPKKKEESATLLCTLINSSDEVAKPYIDPILDVILPKCQDASSAVASTALKVLGELSVVGGKEMTRYLKELMPLIINTFQDQSNSFKRDAALTTLGQLAASSGYVVGPLLDYPELLGILINILKTENNPHIRRGTVRLIGILGALDPYKHREIEVTSNSKSSVEQNAPSIDIALLMQGVSPSNDEYYPTVVIHNLMKILNDPSLSIHHTAAIQAIMHIFQNLGLRCVSFLDQIIPGIILVMRSCPPSQLDFYFQQLGSLISIVKQHIRPHVEKIYGVIREFFPIIKLQITIISVIESISKALEGEFKRFVPETLTFFLDILENDQSNKRIVPIRILKSLVTFGPNLEDYSHLIMPIVVRMTEYSAGSLKKISIITLGRLAKNINLSEMSSRIVQALVRILNNGDRELTKATMNTLSLLLLQLGTDFVVFVPVINKALLRNRIQHSVYDQLVNKLLNNECLPTNIIFDKENEVPERKNYEDEMQVTKLPVNQNILKNAWYCSQQKTKEDWQEWIRRLSIQLLKESPSACLRSCSSLVSVYYPLARELFNASFSSCWVELQTSYQEDLIQALCKALSSSENPPEIYQMLLNLVEFMEHDDKPLPIPIHTLGKYAQKCHAFAKALHYKEVEFLEEPKNSTIEALISINNQLHQTDSAIGILKHAQQHNELQLKETWYEKLQRWEDALAAYNEKEAAGEDSVEVMMGKLRSLYALGEWEELSKLASEKWGTAKPEVKKAMAPLAAGAAWGLEQWDEIAQYTSVMKSQSPDKEFYDAILCLHRNNFKKAEVHIFNARDLLVTELSALVNESYNRAYNVVVRAQIIAELEEIIKYKKLPQNSDKRLTMRETWNTRLLGCQKNIDVWQRILRVRSLVIKPKEDAQVRIKFANLCRKSGRMALAKKVLNTLLEETDDPDHPNTAKASPPVVYAQLKYLWATGLQDEALKQLINFTSRMAHDLGLDPNNMIAQSVPQQSKRVPRHVEDYTKLLARCFLKQGEWRVCLQPKWRLSNPDSILGSYLLATHFDNTWYKAWHNWALANFEVISMLTSVSKKKQEGSDASSVTDINEFDNGMIGVNTFDAKEVHYSSNLIHRHVIPAIKGFFHSISLSESSSLQDALRLLTLWFTFGGIPEATQAMHEGFNLIQIGTWLEVLPQLISRIHQPNQIVSRSLLSLLSDLGKAHPQALVYPLMVAIKSESLSRQKAALSIIEKMRIHSPVLVDQAELVSHELIRMAVLWHEQWYEGLDDASRQFFGEHNTEKMFAALEPLYEMLKRGPETLREISFQNSFGRDLNDAYEWLMNYKKSKDVSNLNQAWDIYYNVFRKIGKQLPQLQTLELQHVSPKLLSAHDLELAVPGTRASGGKPIVKISKFEPVFSVISSKQRPRKFCIKGSDGKDYKYVLKGHEDIRQDSLVMQLFGLVNTLLQNDAECFRRHLDIQQYPAIPLSPKSGLLGWVPNSDTFHVLIREHREAKKIPLNIEHWVMLQMAPDYDNLTLLQKVEVFTYALNNTEGQDLYKVLWLKSRSSETWLERRTTYTRSLAVMSMTGYILGLGDRHPSNLMLDRITGKVIHIDFGDCFEAAILREKFPEKVPFRLTRMLTYAMEVSGIEGSFRITCENVMKVLRDNKGSLMAILEAFAFDPLINWGFDLPTKKIEEETGIQLPVMNANELLSNGAITEEEVQRVENEHKNAIRNARAMLVLKRITDKLTGNDIRRFNDLDVPEQVDKLIQQATSVENLCQHYIGWCPFW", "sequence_length": 2474, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "719df4401f38a8e0bd304e2e27d173aeeb0f33051da0a0c5544c7c43d5bdec25", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P32600.json", "taxon_id": "559292", "uniprot_accession": "P32600", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/frb-dom-pf08771.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/frb-dom-pf08771.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/heat-atr-pf23593.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23593", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/heat-atr-pf23593.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/mtor-dom-pf11865.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11865", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/mtor-dom-pf11865.yaml" } ], "pfam_ids": [ "PF00454", "PF02259", "PF02260", "PF08771", "PF11865", "PF23593" ], "protein_name": "Serine/threonine-protein kinase TOR1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPHEEQIWKSKLLKAANNDMDMDRNVPLAPNLNVNMNMKMNASRNGDEFGLTSSRFDGVVIGSNGDVNFKPILEKIFRELTSDYKEERKLASISLFDLLVSLEHELSIEEFQAVSNDINNKILELVHTKKTSTRVGAVLSIDTLISFYAYTERLPNETSRLAGYLRGLIPSNDVEVMRLAAKTLGKLAVPGGTYTSDFVEFEIKSCLEWLTASTEKNSFSSSKPDHAKHAALLIITALAENCPYLLYQYLNSILDNIWRALRDPHLVIRIDASITLAKCLSTLRNRDPQLTSQWVQRLATSCEYGFQVNTLECIHASLLVYKEILFLKDPFLNQVFDQMCLNCIAYENHKAKMIREKIYQIVPLLASFNPQLFAGKYLHQIMDNYLEILTNAPANKIPHLKDDKPQILISIGDIAYEVGPDIAPYVKQILDYIEHDLQTKFKFRKKFENEIFYCIGRLAVPLGPVLGKLLNRNILDLMFKCPLSDYMQETFQILTERIPSLGPKINDELLNLVCSTLSGTPFIQPGSPMEIPSFSRERAREWRNKNILQKTGESNDDNNDIKIIIQAFRMLKNIKSRFSLVEFVRIVALSYIEHTDPRVRKLAALTSCEIYVKDNICKQTSLHSLNTVSEVLSKLLAITIADPLQDIRLEVLKNLNPCFDPQLAQPDNLRLLFTALHDESFNIQSVAMELVGRLSSVNPAYVIPSIRKILLELLTKLKFSTSSREKEETASLLCTLIRSSKDVAKPYIEPLLNVLLPKFQDTSSTVASTALRTIGELSVVGGEDMKIYLKDLFPLIIKTFQDQSNSFKREAALKALGQLAASSGYVIDPLLDYPELLGILVNILKTENSQNIRRQTVTLIGILGAIDPYRQKEREVTSTTDISTEQNAPPIDIALLMQGMSPSNDEYYTTVVIHCLLKILKDPSLSSYHTAVIQAIMHIFQTLGLKCVSFLDQIIPTILDVMRTCSQSLLEFYFQQLCSLIIIVRQHIRPHVDSIFQAIKDFSSVAKLQITLVSVIEAISKALEGEFKRLVPLTLTLFLVILENDKSSDKVLSRRVLRLLESFGPNLEGYSHLITPKIVQMAEFTSGNLQRSAIITIGKLAKDVDLFEMSSRIVHSLLRVLSSTTSDELSKVIMNTLSLLLIQMGTSFAIFIPVINEVLMKKHIQHTIYDDLTNRILNNDVLPTKILEANTTDYKPAEQMEAADAGVAKLPINQSVLKSAWNSSQQRTKEDWQEWSKRLSIQLLKESPSHALRACSNLASMYYPLAKELFNTAFACVWTELYSQYQEDLIGSLCIALSSPLNPPEIHQTLLNLVEFMEHDDKALPIPTQSLGEYAERCHAYAKALHYKEIKFIKEPENSTIESLISINNQLNQTDAAIGILKHAQQHHSLQLKETWFEKLERWEDALHAYNEREKAGDTSVSVTLGKMRSLHALGEWEQLSQLAARKWKVSKLQTKKLIAPLAAGAAWGLGEWDMLEQYISVMKPKSPDKEFFDAILYLHKNDYDNASKHILNARDLLVTEISALINESYNRAYSVIVRTQIITEFEEIIKYKQLPPNSEKKLHYQNLWTKRLLGCQKNVDLWQRVLRVRSLVIKPKQDLQIWIKFANLCRKSGRMRLANKALNMLLEGGNDPSLPNTFKAPPPVVYAQLKYIWATGAYKEALNHLIGFTSRLAHDLGLDPNNMIAQSVKLSSASTAPYVEEYTKLLARCFLKQGEWRIATQPNWRNTNPDAILGSYLLATHFDKNWYKAWHNWALANFEVISMVQEETKLNGGKNDDDDDTAVNNDNVRIDGSILGSGSLTINGNRYPLELIQRHVVPAIKGFFHSISLLETSCLQDTLRLLTLLFNFGGIKEVSQAMYEGFNLMKIENWLEVLPQLISRIHQPDPTVSNSLLSLLSDLGKAHPQALVYPLTVAIKSESVSRQKAALSIIEKIRIHSPVLVNQAELVSHELIRVAVLWHELWYEGLEDASRQFFVEHNIEKMFSTLEPLHKHLGNEPQTLSEVSFQKSFGRDLNDAYEWLNNYKKSKDINNLNQAWDIYYNVFRKITRQIPQLQTLDLQHVSPQLLATHDLELAVPGTYFPGKPTIRIAKFEPLFSVISSKQRPRKFSIKGSDGKDYKYVLKGHEDIRQDSLVMQLFGLVNTLLKNDSECFKRHLDIQQYPAIPLSPKSGLLGWVPNSDTFHVLIREHRDAKKIPLNIEHWVMLQMAPDYENLTLLQKIEVFTYALDNTKGQDLYKILWLKSRSSETWLERRTTYTRSLAVMSMTGYILGLGDRHPSNLMLDRITGKVIHIDFGDCFEAAILREKYPEKVPFRLTRMLTYAMEVSGIEGSFRITCENVMRVLRDNKESLMAILEAFALDPLIHWGFDLPPQKLTEQTGIPLPLINPSELLRKGAITVEEAANMEAEQQNETKNARAMLVLRRITDKLTGNDIKRFNELDVPEQVDKLIQQATSIERLCQHYIGWCPFW", "sequence_length": 2470, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "edcf873bb8c02e26911037f8e44c9440d44c57bd5be05794cc2e1e9519ac9801", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P35169.json", "taxon_id": "559292", "uniprot_accession": "P35169", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "P42345", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/polyketides/sirolimus.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:9168", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/polyketides/sirolimus.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/frb-dom-pf08771.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/frb-dom-pf08771.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fatc-pf02260.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02260", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fatc-pf02260.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/pi3-4-kinase-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00915", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/pi3-4-kinase-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/pi3-4-kinase-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00916", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/pi3-4-kinase-2.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/fat-pf02259.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/fat-pf02259.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/heat-atr-pf23593.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23593", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/heat-atr-pf23593.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/mtor-dom-pf11865.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11865", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/mtor-dom-pf11865.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P42345", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00454", "PF02259", "PF02260", "PF08771", "PF11865", "PF23593" ], "protein_name": "Serine/threonine-protein kinase mTOR", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "14c12f3038e6dde2d28b78c0961e52dae3040876f6c8e2ce7208899bca679c80", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLGTGPAAATTAATTSSNVSVLQQFASGLKSRNEETRAKAAKELQHYVTMELREMSQEESTRFYDQLNHHIFELVSSSDANERKGGILAIASLIGVEGGNATRIGRFANYLRNLLPSNDPVVMEMASKAIGRLAMAGDTFTAEYVEFEVKRALEWLGADRNEGRRHAAVLVLRELAISVPTFFFQQVQPFFDNIFVAVWDPKQAIREGAVAALRACLILTTQREPKEMQKPQWYRHTFEEAEKGFDETLAKEKGMNRDDRIHGALLILNELVRISSMEGERLREEMEEITQQQLVHDKYCKDLMGFGTKPRHITPFTSFQAVQPQQSNALVGLLGYSSHQGLMGFGTSPSPAKSTLVESRCCRDLMEEKFDQVCQWVLKCRNSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNHVLSCVKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKAMQVDATVFTCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGLLKMLSLVLMHKPLRHPGMPKGLAHQLASPGLTTLPEASDVGSITLALRTLGSFEFEGHSLTQFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSIHLISGHAHVVSQTAVQVVADVLSKLLVVGITDPDPDIRYCVLASLDERFDAHLAQAENLQALFVALNDQVFEIRELAICTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGIGRIKEQSARMLGHLVSNAPRLIRPYMEPILKALILKLKDPDPDPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMDMLQDSSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLGLLGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPAVSMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTFLNVIRVCDGAIREFLFQQLGMLVSFVKSHIRPYMDEIVTLMREFWVMNTSIQSTIILLIEQIVVALGGEFKLYLPQLIPHMLRVFMHDNSPGRIVSIKLLAAIQLFGANLDDYLHLLLPPIVKLFDAPEAPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLDQSPELRSTAMDTLSSLVFQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEEDPLIYQHRMLRSGQGDALASGPVETGPMKKLHVSTINLQKAWGAARRVSKDDWLEWLRRLSLELLKDSSSPSLRSCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELIRSIELALTSQDIAEVTQTLLNLAEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKALHYKELEFQKGPTPAILESLISINNKLQQPEAAAGVLEYAMKHFGELEIQATWYEKLHEWEDALVAYDKKMDTNKDDPELMLGRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGLGQWDSMEEYTCMIPRDTHDGAFYRAVLALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAYGAMVSCHMLSELEEVIQYKLVPERREIIRQIWWERLQGCQRIVEDWQKILMVRSLVVSPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPLPTVHPQVTYAYMKNMWKSARKIDAFQHMQHFVQTMQQQAQHAIATEDQQHKQELHKLMARCFLKLGEWQLNLQGINESTIPKVLQYYSAATEHDRSWYKAWHAWAVMNFEAVLHYKHQNQARDEKKKLRHASGANITNATTAATTAATATTTASTEGSNSESEAESTENSPTPSPLQKKVTEDLSKTLLMYTVPAVQGFFRSISLSRGNNLQDTLRVLTLWFDYGHWPDVNEALVEGVKAIQIDTWLQVIPQLIARIDTPRPLVGRLIHQLLTDIGRYHPQALIYPLTVASKSTTTARHNAANKILKNMCEHSNTLVQQAMMVSEELIRVAILWHEMWHEGLEEASRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRRISKQLPQLTSLELQYVSPKLLMCRDLELAVPGTYDPNQPIIRIQSIAPSLQVITSKQRPRKLTLMGSNGHEFVFLLKGHEDLRQDERVMQLFGLVNTLLANDPTSLRKNLSIQRYAVIPLSTNSGLIGWVPHCDTLHALIRDYREKKKILLNIEHRIMLRMAPDYDHLTLMQKVEVFEHAVNNTAGDDLAKLLWLKSPSSEVWFDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLSGKILHIDFGDCFEVAMTREKFPEKIPFRLTRMLTNAMEVTGLDGNYRITCHTVMEVLREHKDSVMAVLEAFVYDPLLNWRLMDTNTKGNKRSRTRTDSYSAGQSVEILDGVELGEPAHKKTGTTVPESIHSFIGDGLVKPEALNKKAIQIINRVRDKLTGRDFSHDDTLDVPTQVELLIKQATSHENLCQCYIGWCPFW", "sequence_length": 2549, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "14c12f3038e6dde2d28b78c0961e52dae3040876f6c8e2ce7208899bca679c80", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P42345.json", "taxon_id": "9606", "uniprot_accession": "P42345", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyostelium discoideum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/frb-dom-pf08771.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/frb-dom-pf08771.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/mtor-dom-pf11865.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11865", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/mtor-dom-pf11865.yaml" } ], "pfam_ids": [ "PF00454", "PF02259", "PF02260", "PF08771", "PF11865", "PF13513", "PF23271", "PF23593", "PF25574" ], "protein_name": "Serine/threonine-protein kinase tor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQHEQPSIWADALTKLLNDLKSKKEEDRVKASKNLKSYVISQSREMTNENFTKFMNELNNNLIFELVNSSVIPEKIGGIMAIDELIDVDYDENATKITRLANYLRIGLGFNDFTVMLMASKALGRLARSSGTLTAEFVEFEVTRALEWLSGDRIEARRHAAVLVLKELAQNAPTLFYVHASSFVDLIWVALKDPKVAIREGAVEALRACLELISERESRLRLQWYQKIYDEAQKSFKQNGSPESIHGSLITVSELLRNTGDFMLSKFKDICETVLKYKDHRDKLVKKTVLALFPRLAVFCSRDFVLNYFNACMNHLLAALRNQNERPTAFIALGEIAMAVGGSIKPYLDSIVVMIKQGLMTKGKQFCPEVLTCISMLASAVGQSMYPHMQVILPQMIVSSGLTVVLTDALRDLTINLPTLIPNIQYKLLNLISQVLANKPFSEPGAPSPYRKSATPFQGGSIPQLGQNSDVDPQMIALALKTLGSFDFSKHNLLEFVRECVVNYLDDDNIEIRREAAITCAQLMVGTEEPTPTRGHSAVIVGEVLEKLLVVGIADPDPSIRKTVLSSLEARFDHYLAQAENLRSLFIALNDELFEIRELAITVIGRLTIRNPAYVMPSLRKTLIQLLTELEFSGDGRNKEESARLLGHLISASEKLIKPYVEPILKALLPKLRDSNPRVASCVLAALGELSVVGGEEMVQHIDSLLPLIIDTLQDQSSTSKREVALKTLAQLASSTGYVIKPFSKYPMLLDTLLNAIKTERIGSIRREVIKVLGILGSLDPYKHKMNELGKRREDPKANDDKNNNMTNEVITISPSNEDYYPTVALTALMKILRDPSLSSHHTSVIQAVMYIFKSLSLKSIPFLPQIMPPFLHAMNTGEPLFREFLFQQLGSLVSIVKQHIRDYLVNVFALIEKYWNSNLLIPIIKLVEEISSALNDEFKVYLPNLIPQMLNVLHTDRSPKRSPTTKVLRALEVFGTNLDDYLHLVIPAIVKLFEQVDVTTQVRTLAIQTIGRLCKKLNFSDYASRIIHPLARVLDSTESELREETLNTLCALVYQLGSDYAIFIPMVGKVLARREIQSTNYELLISKLLKNQQLMLTPGSGDDGGMGANRFGGDHNGHHLGEDHNNTSTPLDIGVKKLKANEQHLKNAWETSQRSTKEDWGEWIRRFSVELLRESPSPALRSCLSLAQDYHPLVKELFNAGFVSCWTELHEQFQEELVRSLETALLSPNIPPEILQTLLNLAEFMELHEKPLPIDIRTLGALAEKCHAYAKALHYKESEFSQSPSSTIEALISINNQLQQPEAAIGILIYAQKNHSVELKEGWYEKLRRWEDALAAYEKKQKDDPNGGTIENTMGILRCLHALGEWERLSALSSETWKSDINDHTRATIAPLAAAAAWNLVNWDKMDEYVCAMNKDTVEGSFYRAILEVHHDNFTLAHGFIDHARTLVDTELTALLGESYNRAYKVVVRLQQLSELEEIIEYKKCVDSPERRNMIKNTWKTRLRGCQHNVDIWQSILAVHSLVISPHEELDMWLKFVGLCRKGSRLGLAQKTLTMLMGKDPSTTSQFGSVLPNTHPRITFAYIKQLWSAGAKQPAFEKLRTFVQALRDTDDLPLQGRAYLKLGEWQLALGDTLSEASIPHIISSFKAATECDPNWYKAWHSWALINFEVVSHYEQNGGTPEQIGAHLLPAVHSFFKSISLGPDRSLQDTLRLLTLWFKHGAQKEVEAALMQGFNTISIDTWLHVIPQIIARIHAPVLPVRRLLHELIDTIGKEHPQALVYPLTVATKSHSPARLAAAKSLMDKMRKHSATLVDQALPVSQELVRTAILWLEMWYEGLEEASRQYFGDHNPEAMLATLAPLHQILEKGPETTSETSFLQAFGRDLQEALEWSKKYEKTRKEGDLNQAWDLYYQVFRRIYKQLPQMSSLELQYVSPKLLNSNNMELAVPGTYKASENVIRIQSFSQALSVIPSKQRPRKLTIIGSDGLEYTFLLKGHEDLRQDERVMQLFSLVNNLLSANHETAKSHLSIRRFSVIPLSPNSGLIGWVPHSDTLHTLIKDFRDSNKILLSIEHRLMLQMCSDYDNLTLLQKVEVFQYALENSNGLDLHKVLWLKSRNSEVWLDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRHTGHILHIDFGDCFEVAMHRDKYPEKIPFRLTRMLINAMEVSGIEGNFRLTCEAVMNVLRNNKESLMAVLEAFVHDPLINWRLLTPNENNTKHKATNIASNNSTSNSTTKIEGDLNTIDNPINKESPDHEAVAGSLKSSPVHGRQIARNQRVGVDAEQVEAEIVPEALNERALSVINRVNKKLTGRDFSSNETLDVPEQVQKLIDQATSHENLCLSYVGWCPFW", "sequence_length": 2380, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "89640d1837e7efcfd94c662e7f3bd3e6863db5f5e438f8667fc7c5510d25c0e9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q86C65.json", "taxon_id": "44689", "uniprot_accession": "Q86C65", "uniprot_release": "2026_03" } ], "pfam_id": "PF11865", "short_name": "mTOR_dom", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11866", "short_name": "DUF3386", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/t1rh-like-c-pf11867.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11867", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/t1rh-like-c-pf11867.yaml" } ], "pfam_ids": [ "PF04313", "PF11867", "PF18766", "PF22679" ], "protein_name": "Putative type I restriction enzyme MjaIXP endonuclease subunit", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPISANKYFLLVGVFIGDKMKKEAAKLNEDYVVENAAIQRLKNLGYSYKHGSELTPEYNERESYRDAILKNRFIKAIKNINPWLTEELALKVYKTVTNIDNPDFNMRGKIFYEMLINGVKLEFKENGEKKTRFVKLIDFENINKNEFLVANQFEVEYYYENGRFRRPDLVVFINGIPIAIFEFKSPKSNQTAKDAFNDHKTKMKDIPQLYQYAQILVVSDGLETKYGSPTSDWDRFFVWEGVESDDDVEVIEVDNYGNTMYKYKGNPYTSLDILLMGLFKKEHLIEFLEDFIIHDKKKIIATYYQFYTVKKAVDRTIKSVLYGETPEDRRIGIVWHAQGTGKSITMLFYAKKALKQKELNYPLLVFLTDRLELDEQLYNVFSSVFSEAERAESIAELQELIKKTPGGIIFATIQKFGRKSKDEHYPFLTDRNNIIIIADEAHRSHYGTLAQNLRKAIPNASFLAFTATPIDYKDRSTFLVFGDYISAYPIDKAKRHGVVVPIYYEARLVELHLTNEFIDLEFDEISERVANDPETKESIKEVFAKLEKIMLTEDYLSKVSKDIIEHFNKRLQDFDGKAMVVTISRKVAVELYKWITKQPNAPKIAVVMSGNKSKDPEDFHPHIRTKKELENLAKEFKDPESDLKMVIVVDMWLTGFDVPCLHTMYFLKPMKNHSLAQAIARVNRVFKDKPGGLIVDYIGIADDLSKSLSKYSSEARKDLMTDIKVVIEEMKRRYEKVTSYFKNINYKDWKKLSSEDLSLLTVKAYQRVAKDDNTKKEFVRNVIALKKLYLLARPHPETIGIKDDLEFFEMIKKMIVKYSTKKIREISQDLENDIQSLISKSISAKELVDVFEMLKKEKPELSVLSDEFLSEIAKIEYKDYVRDVLIKILNDDIRVRMAKNPIRFKKFSERLNEVIEKYRIKVITTAEMIEELVNLAKEIRKAAEEGKELGLTEEELAFYDLLLSYPNIPLTDKKRVEKIAKEIARMMSGYIKARDWKKKKNLQSKIRAKLKIILMKEGIKDYSLINKISDDLFEYAKNIYAI", "sequence_length": 1042, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "91d25477cb686274b20ab47a157b97bd4f81727da254057cfb184c732ba9978a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q60295.json", "taxon_id": "243232", "uniprot_accession": "Q60295", "uniprot_release": "2026_03" } ], "pfam_id": "PF11867", "short_name": "T1RH-like_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3388-ipr024514.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024514", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3388-ipr024514.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3388-pf11868.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11868", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3388-pf11868.yaml" } ], "pfam_ids": [ "PF11868" ], "protein_name": "Uncharacterized protein YmfK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKGVYHLAKLEWYFEYEIQVNRPGLLGDISSLLGMLSINIVTINGVDLSRRGMLLRCRHIDQIKRLESILKTMETIKVTKLREPRLRDRLAVRHGRYIQRDADDKKTFRFERDELGLLVDFMAELFKKEGHKLIGIRGMPRVGKTESIVASSVCASKRWLFVSSTLLKQTIRSQLIADEYSTENVFIVDGIVSTRRGSERHLQLVREIMRLPATKVVEHPDIFVQNTEYTLDDFDYIIELRNDPDEVITYEHAEEPQMFDQSGFSSFDF", "sequence_length": 269, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "75ce1cf436d61d8dde583ceab7cada704f03e15fc14595fd03aec54a7a523d64", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O31769.json", "taxon_id": "224308", "uniprot_accession": "O31769", "uniprot_release": "2026_03" } ], "pfam_id": "PF11868", "short_name": "DUF3388", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11869", "short_name": "DUF3389", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lutb-c-pf11870.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11870", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lutb-c-pf11870.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O07021", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02589", "PF11870", "PF13183" ], "protein_name": "Lactate utilization protein B", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "41511da9e5462f1ae1600bed8aeebb518f7f626645770d8653a4c0743ebd3271", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"MAEVRKFTKRLSKPGTAAELRQSVSEAVRGSVVLEKAKVVEPLDYENVIAQRKTQIYSDPLRDLLMFPMEDISISVIGRQRRTVQSTVPEDAEKRAQSLFVKECIKTYSTDWHVVNYKYEDFSGDFRMLPCKSLRPEKIPNHVFEIDEDCEKDEDSSSLCSQKGGVIKQGWLHKANVNSTITVTMKVFKRRYFYLTQLPDGSYILNSYKDEKNSKESKGCIYLDACIDVVQCPKMRRHAFELKMLDKYSHYLAAETEQEMEEWLITLKKIIQINTDSLVQEKKETVETAQDDETSSQGKAENIMASLERSMHPELMKYGRETEQLNKLSRGDGRQNLFSFDSEVQRLDFSGIEPDIKPFEEKCNKRFLVNCHDLTFNILGQIGDNAKGPPTNVEPFFINLALFDVKNNCKISADFHVDLNPPSVREMLWGSSTQLASDGSPKGSSPESYIHGIAESQLRYIQQGIFSVTNPHPEIFLVARIEKVLQGNITHCAEPYIKNSDPVKTAQKVHRTAKQVCSRLGQYRMPFAWAARPIFKDTQGSLDLDGRFSPLYKQDSSKLSSEDILKLLSEYKKPEKTKLQIIPGQLNITVECVPVDLSNCITSSYVPLKPFEKNCQNITVEVEEFVPEMTKYCYPFTIYKNHLYVYPLQLKYDSQKTFAKARNIAVCVEFRDSDESDASALKCIYGKPAGSVFTTNAYAVVSHHNQNPEFYDEIKIELPIHLHQKHHLLFTFYHVSCEINTKGTTKKQDTVETPVGFAWVPLLKDGRIITFEQQLPVSANLPPGYLNLNDAESRRQCNVDIKWVDGAKPLLKIKSHLESTIYTQDLHVHKFFHHCQLIQSGSKEVPGELIKYLKCLHAMEIQVMIQFLPVILMQLFRVLTNMTHEDDVPINCTMVLLHIVSKCHEEGLDSYLRSFIKYSFRPEKPSAPQAQLIHETLATTMIAILKQSADFLSINKLLKYSWFFFEIIAKSMATYLLEENKIKLPRGQRFPETYHHVLHSLLLAIIPHVTIRYAEIPDESRNVNYSLASFLKRCLTLMDRGFIFNLINDYISGFSPKDPKVLAEYKFEFLQTICNHEHYIPLNLPMAFAKPKLQRVQDSNLEYSLSDEYCKHHFLVGLLLRETSIALQDNYEIRYTAISVIKNLLIKHAFDTRYQHKNQQAKIAQLYLPFVGLLLENIQRLAGRDTLYSCAAMPNSASRDEFPCGFTSPANRGSLSTDKDTAYGSFQNGHGIKREDSRGSLIPEGATGFPDQGNTGENTRQSSTRSSVSQYNRLDQYEIRSLLMCYLYIVKMISEDTLLTYWNKVSPQELINILILLEVCLFHFRYMGKRNIARVHDAWLSKHFGIDRKSQTMPALRNRSGVMQARLQHLSSLESSFTLNHSSTTTEADIFHQALLEGNTATEVSLTVLDTISFFTQCFKTQLLNNDGHNPLMKKVFDIHLAFLKNGQSEVSLKHVFASLRAFISKFPSAFFKGRVNMCAAFCYEVLKCCTSKISSTRNEASALLYLLMRNNFEYTKRKTFLRTHLQIIIAVSQLIADVALSGGSRFQESLFIINNFANSDRPMKATAFPAEVKDLTKRIRTVLMATAQMKEHEKDPEMLIDLQYSLAKSYASTPELRKTWLDSMAKIHVKNGDFSEAAMCYVHVAALVAEFLHRKKLFPNGCSAFKKITPNIDEEGAMKEDAGMMDVHYSEEVLLELLEQCVDGLWKAERYEIISEISKLIVPIYEKRREFEKLTQVYRTLHGAYTKILEVMHTKKRLLGTFFRVAFYGQSFFEEEDGKEYIYKEPKLTGLSEISLRLVKLYGEKFGTENVKIIQDSDKVNAKELDPKYAHIQVTYVKPYFDDKELTERKTEFERNHNISRFVFEAPYTLSGKKQGCIEEQCKRRTILTTSNSFPYVKKRIPINCEQQINLKPIDVATDEIKDKTAELQKLCSSTDVDMIQLQLKLQGCVSVQVNAGPLAYARAFLNDSQASKYPPKKVSELKDMFRKFIQACSIALELNERLIKEDQVEYHEGLKSNFRDMVKELSDIIHEQILQEDTMHSPWMSNTLHVFCAISGTSSDRGYGSPRYAEV", "sequence_length": 2073, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "9e06ed258833c3cdf112dbd5b2207412086e400b12236ce8b71a023fa0898030", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5JSL3.json", "taxon_id": "9606", "uniprot_accession": "Q5JSL3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dhr-2-lobe-b-pf20422.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20422", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dhr-2-lobe-b-pf20422.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dock-c-d-n-pf11878.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11878", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dock-c-d-n-pf11878.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dock-c2-pf14429.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14429", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dock-c2-pf14429.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/dhr-2-lobe-a-pf06920.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06920", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/dhr-2-lobe-a-pf06920.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/dhr-2-lobe-c-pf20421.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20421", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/dhr-2-lobe-c-pf20421.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-dock9-pf28208.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28208", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-dock9-pf28208.yaml" } ], "pfam_ids": [ "PF06920", "PF11878", "PF14429", "PF20421", "PF20422", "PF28208" ], "protein_name": "Dedicator of cytokinesis protein 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATLPSAERRAFALKINRYSSAEIRKQFTLPPNLGQYHRQSISTSGFPSLQLPQFYDPVEPVDFEGLLMTHLNSLDVQLAQELGDFTDDDLDVVFTPKECRTLQPSLPEEGVELDPHVRDCVQTYIREWLIVNRKNQGSPEICGFKKTGSRKDFHKTLPKQTFESETLECSEPAAQAGPRHLNVLCDVSGKGPVTACDFDLRSLQPDKRLENLLQQVSAEDFEKQNEEARRTNRQAELFALYPSVDEEDAVEIRPVPECPKEHLGNRILVKLLTLKFEIEIEPLFASIALYDVKERKKISENFHCDLNSDQFKGFLRAHTPSVAASSQARSAVFSVTYPSSDIYLVVKIEKVLQQGEIGDCAEPYTVIKESDGGKSKEKIEKLKLQAESFCQRLGKYRMPFAWAPISLSSFFNVSTLEREVTDVDSVVGRSSVGERRTLAQSRRLSERALSLEENGVGSNFKTSTLSVSSFFKQEGDRLSDEDLFKFLADYKRSSSLQRRVKSIPGLLRLEISTAPEIINCCLTPEMLPVKPFPENRTRPHKEILEFPTREVYVPHTVYRNLLYVYPQRLNFVNKLASARNITIKIQFMCGEDASNAMPVIFGKSSGPEFLQEVYTAVTYHNKSPDFYEEVKIKLPAKLTVNHHLLFTFYHISCQQKQGASVETLLGYSWLPILLNERLQTGSYCLPVALEKLPPNYSMHSAEKVPLQNPPIKWAEGHKGVFNIEVQAVSSVHTQDNHLEKFFTLCHSLESQVTFPIRVLDQKISEMALEHELKLSIICLNSSRLEPLVLFLHLVLDKLFQLSVQPMVIAGQTANFSQFAFESVVAIANSLHNSKDLSKDQHGRNCLLASYVHYVFRLPEVQRDVPKSGAPTALLDPRSYHTYGRTSAAAVSSKLLQARVMSSSNPDLAGTHSAADEEVKNIMSSKIADRNCSRMSYYCSGSSDAPSSPAAPRPASKKHFHEELALQMVVSTGMVRETVFKYAWFFFELLVKSMAQHVHNMDKRDSFRRTRFSDRFMDDITTIVNVVTSEIAALLVKPQKENEQAEKMNISLAFFLYDLLSLMDRGFVFNLIRHYCSQLSAKLSNLPTLISMRLEFLRILCSHEHYLNLNLFFMNADTAPTSPCPSISSQNSSSCSSFQDQKIASMFDLTSEYRQQHFLTGLLFTELAAALDAEGEGISKVQRKAVSAIHSLLSSHDLDPRCVKPEVKVKIAALYLPLVGIILDALPQLCDFTVADTRRYRTSGSDEEQEGAGAINQNVALAIAGNNFNLKTSGIVLSSLPYKQYNMLNADTTRNLMICFLWIMKNADQSLIRKWIADLPSTQLNRILDLLFICVLCFEYKGKQSSDKVSTQVLQKSRDVKARLEEALLRGEGARGEMMRRRAPGNDRFPGLNENLRWKKEQTHWRQANEKLDKTKAELDQEALISGNLATEAHLIILDMQENIIQASSALDCKDSLLGGVLRVLVNSLNCDQSTTYLTHCFATLRALIAKFGDLLFEEEVEQCFDLCHQVLHHCSSSMDVTRSQACATLYLLMRFSFGATSNFARVKMQVTMSLASLVGRAPDFNEEHLRRSLRTILAYSEEDTAMQMTPFPTQVEELLCNLNSILYDTVKMREFQEDPEMLMDLMYRIAKSYQASPDLRLTWLQNMAEKHTKKKCYTEAAMCLVHAAALVAEYLSMLEDHSYLPVGSVSFQNISSNVLEESVVSEDTLSPDEDGVCAGQYFTESGLVGLLEQAAELFSTGGLYETVNEVYKLVIPILEAHREFRKLTLTHSKLQRAFDSIVNKDHKRMFGTYFRVGFFGSKFGDLDEQEFVYKEPAITKLPEISHRLEAFYGQCFGAEFVEVIKDSTPVDKTKLDPNKAYIQITFVEPYFDEYEMKDRVTYFEKNFNLRRFMYTTPFTLEGRPRGELHEQYRRNTVLTTMHAFPYIKTRISVIQKEEFVLTPIEVAIEDMKKKTLQLAVAINQEPPDAKMLQMVLQGSVGATVNQGPLEVAQVFLAEIPADPKLYRHHNKLRLCFKEFIMRCGEAVEKNKRLITADQREYQQELKKNYNKLKENLRPMIERKIPELYKPIFRVESQKRDSFHRSSFRKCETQLSQGS", "sequence_length": 2099, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bd861d923dd9f5341b6782a44062f81b72680a4aae46f985f8ba44fe86b22c49", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NF50.json", "taxon_id": "9606", "uniprot_accession": "Q8NF50", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-dock9-pf28208.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28208", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-dock9-pf28208.yaml" } ], "pfam_ids": [ "PF00169", "PF06920", "PF11878", "PF14429", "PF20421", "PF20422", "PF28208" ], "protein_name": "Dedicator of cytokinesis protein 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGERTRRFTRSLLRPGQAAELRHSAASAAAVAVSSRQQQRQEKPRLLEPLDYETVIEELEKTYRNDPLQDLLFFPSDDFSAATVSWDIRTLYSTVPEDAEHKAENLLVKEACKFYSSQWHVVNYKYEQYSGDIRQLPRAEYKPEKLPSHSFEIDHEDADKDEDTTSHSSSKGGGGAGGTGVFKSGWLYKGNFNSTVNNTVTVRSFKKRYFQLTQLPDNSYIMNFYKDEKISKEPKGCIFLDSCTGVVQNNRLRKYAFELKMNDLTYFVLAAETESDMDEWIHTLNRILQISPEGPLQGRRSTELTDLGLDSLDNSVTCECTPEETDSSENNLHADFAKYLTETEDTVKTTRNMERLNLFSLDPDIDTLKLQKKDLLEPESVIKPFEEKAAKRIMIICKALNSNLQGCVTENENDPITNIEPFFVSVALYDLRDSRKISADFHVDLNHAAVRQMLLGASVALENGNIDTITPRQSEEPHIKGLPEEWLKFPKQAVFSVSNPHSEIVLVAKIEKVLMGNIASGAEPYIKNPDSNKYAQKILKSNRQFCSKLGKYRMPFAWAVRSVFKDNQGNVDRDSRFSPLFRQESSKISTEDLVKLVSDYRRADRISKMQTIPGSLDIAVDNVPLEHPNCVTSSFIPVKPFNMMAQTEPTVEVEEFVYDSTKYCRPYRVYKNQIYIYPKHLKYDSQKCFNKARNITVCIEFKNSDEESAKPLKCIYGKPGGPLFTSAAYTAVLHHSQNPDFSDEVKIELPTQLHEKHHILFSFYHVTCDINAKANAKKKEALETSVGYAWLPLMKHDQIASQEYNIPIATSLPPNYLSFQDSASGKHGGSDIKWVDGGKPLFKVSTFVVSTVNTQDPHVNAFFQECQKREKDMSQSPTSNFIRSCKNLLNVEKIHAIMSFLPIILNQLFKVLVQNEEDEITTTVTRVLTDIVAKCHEEQLDHSVQSYIKFVFKTRACKERTVHEELAKNVTGLLKSNDSTTVKHVLKHSWFFFAIILKSMAQHLIDTNKIQLPRPQRFPESYQNELDNLVMVLSDHVIWKYKDALEETRRANHSVARFLKRCFTFMDRGYVFKMVNNYISMFSSGDLKTLCQYKFDFLQEVCQHEHFIPLCLPIRSANIPDPLTPSESTQELHASDMPEYSVTNEFCRKHFLIGILLREVGFALQEDQDVRHLALAVLKNLMAKHSFDDRYREPRKQAQIASLYMPLYGMLLDNMPRIYLKDLYPFTVNTSNQGSRDDLSTNGGFQSQTAIKHANSVDTSFSKDVLNSIAAFSSIAISTVNHADSRASLASLDSNPSTNEKSSEKTDNCEKIPRPLSLIGSTLRFDKLDQAETRSLLMCFLHIMKTISYETLIAYWQRAPSPEVSDFFSILDVCLQNFRYLGKRNIIRKIAAAFKFVQSTQNNGTLKGSNPSCQTSGLLSQWMHSTSSHEGHKQHRSQTLPIIRGKNALSNPKLLQMLDNTMTSNSNEIDIVHHVDTEANIATEVCLTILDLLSLFTQTHQRQLQQCDCQNSLMKRVFDTYMLFFQVNQSATALKHVFASLRLFVCKFPSAFFQGPADLCGSFCYEVLKCCNHRSRSTQTEASALLYFFMRKNFEFNKQKSIVRSHLQLIKAVSQLIADAGIGGSRFQHSLAITNNFANGDKQMKNSNFPAEVKDLTKRIRTVLMATAQMKEHEKDPEMLVDLQYSLANSYASTPELRRTWLESMAKIHARNGDLSEAAMCYIHIAALIAEYLKRKGYWKVEKICTASLLSEDTHPCDSNSLLTTPSGGSMFSMGWPAFLSITPNIKEEGAMKEDSGMQDTPYNENILVEQLYMCVEFLWKSERYELIADVNKPIIAVFEKQRDFKKLSDLYYDIHRSYLKVAEVVNSEKRLFGRYYRVAFYGQGFFEEEEGKEYIYKEPKLTGLSEISQRLLKLYADKFGADNVKIIQDSNKVNPKDLDPKYAYIQVTYVTPFFEEKEIEDRKTDFEMHHNINRFVFETPFTLSGKKHGGVAEQCKRRTILTTSHLFPYVKKRIQVISQSSTELNPIEVAIDEMSKKVSELNQLCTMEEVDMIRLQLKLQGSVSVKVNAGPMAYARAFLEETNAKKYPDNQVKLLKEIFRQFADACGQALDVNERLIKEDQLEYQEELRSHYKDMLSELSTVMNEQITGRDDLSKRGVDQTCTRVISKATPALPTVSISSSAEV", "sequence_length": 2186, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0f7dc781c18e2692b0d13ecd6817121c4eac3fe8e62fc2ea1241be1b3c04dbe7", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q96BY6.json", "taxon_id": "9606", "uniprot_accession": "Q96BY6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dock-c-d-n-pf11878.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11878", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dock-c-d-n-pf11878.yaml" } ], "pfam_ids": [ "PF06920", "PF11878", "PF14429", "PF20421", "PF20422", "PF28208" ], "protein_name": "Dedicator of cytokinesis protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAASERRAFAHKINRTVAAEVRKQVSRERSGSPHSSRRCSSSLGVPLTEVVEPLDFEDVLLSRPPDAEPGPLRDLVEFPADDLELLLQPRECRTTEPGIPKDEKLDAQVRAAVEMYIEDWVIVHRRYQYLSAAYSPVTTDTQRERQKGLPRQVFEQDASGDERSGPEDSNDSRRGSGSPEDTPRSSGASSIFDLRNLAADSLLPSLLERAAPEDVDRRNETLRRQHRPPALLTLYPAPDEDEAVERCSRPEPPREHFGQRILVKCLSLKFEIEIEPIFGILALYDVREKKKISENFYFDLNSDSMKGLLRAHGTHPAISTLARSAIFSVTYPSPDIFLVIKLEKVLQQGDISECCEPYMVLKEVDTAKNKEKLEKLRLAAEQFCTRLGRYRMPFAWTAVHLANIVSSAGQLDRDSDSEGERRPAWTDRRRRGPQDRASSGDDACSFSGFRPATLTVTNFFKQEAERLSDEDLFKFLADMRRPSSLLRRLRPVTAQLKIDISPAPENPHFCLSPELLHIKPYPDPRGRPTKEILEFPAREVYAPHTSYRNLLYVYPHSLNFSSRQGSVRNLAVRVQYMTGEDPSQALPVIFGKSSCSEFTREAFTPVVYHNKSPEFYEEFKLHLPACVTENHHLLFTFYHVSCQPRPGTALETPVGFTWIPLLQHGRLRTGPFCLPVSVDQPPPSYSVLTPDVALPGMRWVDGHKGVFSVELTAVSSVHPQDPYLDKFFTLVHVLEEGAFPFRLKDTVLSEGNVEQELRASLAALRLASPEPLVAFSHHVLDKLVRLVIRPPIISGQIVNLGRGAFEAMAHVVSLVHRSLEAAQDARGHCPQLAAYVHYAFRLPGTEPSLPDGAPPVTVQAATLARGSGRPASLYLARSKSISSSNPDLAVAPGSVDDEVSRILASKLLHEELALQWVVSSSAVREAILQHAWFFFQLMVKSMALHLLLGQRLDTPRKLRFPGRFLDDITALVGSVGLEVITRVHKDVELAEHLNASLAFFLSDLLSLVDRGFVFSLVRAHYKQVATRLQSSPNPAALLTLRMEFTRILCSHEHYVTLNLPCCPLSPPASPSPSVSSTTSQSSTFSSQAPDPKVTSMFELSGPFRQQHFLAGLLLTELALALEPEAEGAFLLHKKAISAVHSLLCGHDTDPRYAEATVKARVAELYLPLLSIARDTLPRLHDFAEGPGQRSRLASMLDSDTEGEGDIAGTINPSVAMAIAGGPLAPGSRASISQGPPTASRAGCALSAESSRTLLACVLWVLKNTEPALLQRWATDLTLPQLGRLLDLLYLCLAAFEYKGKKAFERINSLTFKKSLDMKARLEEAILGTIGARQEMVRRSRERSPFGNPENVRWRKSVTHWKQTSDRVDKTKDEMEHEALVEGNLATEASLVVLDTLEIIVQTVMLSEARESVLGAVLKVVLYSLGSAQSALFLQHGLATQRALVSKFPELLFEEDTELCADLCLRLLRHCGSRISTIRTHASASLYLLMRQNFEIGHNFARVKMQVTMSLSSLVGTTQNFSEEHLRRSLKTILTYAEEDMGLRDSTFAEQVQDLMFNLHMILTDTVKMKEHQEDPEMLIDLMYRIARGYQGSPDLRLTWLQNMAGKHAELGNHAEAAQCMVHAAALVAEYLALLEDHRHLPVGCVSFQNISSNVLEESAISDDILSPDEEGFCSGKHFTELGLVGLLEQAAGYFTMGGLYEAVNEVYKNLIPILEAHRDYKKLAAVHGKLQEAFTKIMHQSSGWERVFGTYFRVGFYGAHFGDLDEQEFVYKEPSITKLAEISHRLEEFYTERFGDDVVEIIKDSNPVDKSKLDSQKAYIQITYVEPYFDTYELKDRVTYFDRNYGLRTFLFCTPFTPDGRAHGELPEQHKRKTLLSTDHAFPYIKTRIRVCHREETVLTPVEVAIEDMQKKTRELAFATEQDPPDAKMLQMVLQGSVGPTVNQGPLEVAQVFLAEIPEDPKLFRHHNKLRLCFKDFCKKCEDALRKNKALIGPDQKEYHRELERNYCRLREALQPLLTQRLPQLMAPTPPGLRNSLNRASFRKADL", "sequence_length": 2047, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a1f559649c605cdf216e88faa751b265465ffb4e9df7d03e4365a233783fd642", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q96HP0.json", "taxon_id": "9606", "uniprot_accession": "Q96HP0", "uniprot_release": "2026_03" } ], "pfam_id": "PF11878", "short_name": "DOCK_C-D_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3399-pf11879.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11879", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3399-pf11879.yaml" } ], "pfam_ids": [ "PF00520", "PF02214", "PF11601", "PF11879" ], "protein_name": "A-type voltage-gated potassium channel KCND1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAGLATWLPFARAAAVGWLPLAQQPLPPAPGVKASRGDEVLVVNVSGRRFETWKNTLDRYPDTLLGSSEKEFFYDADSGEYFFDRDPDMFRHVLNFYRTGRLHCPRQECIQAFDEELAFYGLVPELVGDCCLEEYRDRKKENAERLAEDEEAEQAGDGPALPAGSSLRQRLWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCRGSARRSSREQPCGERFPQAFFCMDTACVLIFTGEYLLRLFAAPSRCRFLRSVMSLIDVVAILPYYIGLLVPKNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGTNKTNFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQQKVRLARIRLAKSGTTNAFLQYKQNGGLEDSGSGEEQALCVRNRSAFEQQHHHLLHCLEKTTCHEFTDELTFSEALGAVSPGGRTSRSTSVSSQPVGPGSLLSSCCPRRAKRRAIRLANSTASVSRGSMQELDMLAGLRRSHAPQSRSSLNAKPHDSLDLNCDSRDFVAAIISIPTPPANTPDESQPSSPGGGGRAGSTLRNSSLGTPCLFPETVKISSL", "sequence_length": 647, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3509ac89a77d85cd196db12cbe5559c7cfc3bf27541eff6fc98ec83a9dd62883", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NSA2.json", "taxon_id": "9606", "uniprot_accession": "Q9NSA2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3399-pf11879.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11879", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3399-pf11879.yaml" } ], "pfam_ids": [ "PF00520", "PF02214", "PF11601", "PF11879" ], "protein_name": "A-type voltage-gated potassium channel KCND2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAGVAAWLPFARAAAIGWMPVASGPMPAPPRQERKRTQDALIVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRRENAERLQDDADTDTAGESALPTMTARQRVWRAFENPHTSTMALVFYYVTGFFIAVSVIANVVETVPCGSSPGHIKELPCGERYAVAFFCLDTACVMIFTVEYLLRLAAAPSRYRFVRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSASKFTSIPAAFWYTIVTMTTLGYGDMVPKTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQKKARLARIRAAKSGSANAYMQSKRNGLLSNQLQSSEDEQAFVSKSGSSFETQHHHLLHCLEKTTNHEFVDEQVFEESCMEVATVNRPSSHSPSLSSQQGVTSTCCSRRHKKTFRIPNANVSGSHQGSIQELSTIQIRCVERTPLSNSRSSLNAKMEECVKLNCEQPYVTTAIISIPTPPVTTPEGDDRPESPEYSGGNIVRVSAL", "sequence_length": 630, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7443b756c7b70f6c0c3a32d1af93451b9e956f57df61f131a4008e932c20f812", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NZV8.json", "taxon_id": "9606", "uniprot_accession": "Q9NZV8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3399-pf11879.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11879", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3399-pf11879.yaml" } ], "pfam_ids": [ "PF00520", "PF02214", "PF11601", "PF11879" ], "protein_name": "A-type voltage-gated potassium channel KCND3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAGVAAWLPFARAAAIGWMPVANCPMPLAPADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKRENAERLMDDNDSENNQESMPSLSFRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACVMIFTVEYLLRLFAAPSRYRFIRSVMSIIDVVAIMPYYIGLVMTNNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSASKFTSIPASFWYTIVTMTTLGYGDMVPKTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQKKARLARIRVAKTGSSNAYLHSKRNGLLNEALELTGTPEEEHMGKTTSLIESQHHHLLHCLEKTTGLSYLVDDPLLSVRTSTIKNHEFIDEQMFEQNCMESSMQNYPSTRSPSLSSHPGLTTTCCSRRSKKTTHLPNSNLPATRLRSMQELSTIHIQGSEQPSLTTSRSSLNLKADDGLRPNCKTSQITTAIISIPTPPALTPEGESRPPPASPGPNTNIPSIASNVVKVSAL", "sequence_length": 655, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7ed37e7b0bd23b2e4067bbae94ccbcdfecf8992873fa005a302b8c23521f0a5c", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UK17.json", "taxon_id": "9606", "uniprot_accession": "Q9UK17", "uniprot_release": "2026_03" } ], "pfam_id": "PF11879", "short_name": "DUF3399", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11880", "short_name": "DUF3400", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spar-c-pf11881.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spar-c-pf11881.yaml" } ], "pfam_ids": [ "PF02145", "PF11881", "PF21022" ], "protein_name": "Signal-induced proliferation-associated 1-like protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTYRPLPNDGVDLAASCGARSTDILPGPHPGDYTPMGFWAQNGSMPQPLGESPAATTTRPSPTTPAMPKMGVRARVADWPPKRDALREQSNPSPSQDTDGVKTTKVAHSMRNLQNGQLPSSTPASSGSRAFHRLSRRRSKDVEFQDGWPRSPGRAFLPLRHRSSSEITLSECDVEEPGDPRGTRHPGVLPLFREYGSTSSIDVQGVPEQSFFDILNEFRSEQPEARGSQNLRELLQVDPGALSGGSCGTKGDPRNGQPTKDSLQSLQPLKEKEKSRKKPVRGLGSGDTVDSSIFRKLRSSKPEGEVGRPLGETEESRSPPEASRPWVCQKSFAHFDVQSMLFDLNEAAANRVSVAQRRNTTTGASAASAASAMVTLTASRAHSLGTLDPAFTSTEDLNCKENLEQDLGDDNSNDLLLSCPHFRNEIGGERERNVSFSRASVGSPGGSSEAHMAEPTLSTHRTNASISVLEVPKEQQRTQSRPRQYSIEHVDLGARYYQDYFVGKEHANYFGVDEKLGPVAVSIKREKLEDHKDHGPQYQYRIIFRTRELITLRGSILEDATPTATKHGTGRGLPLKDALEYVIPELNIHCLRLALNTPKVTEQLLKLDEQGLCRKHKVGILYCKAGQSSEEEMYNNEEAGPAFEEFLDLLGDKVCLKGFTKYAAQLDVKTDSTGTHSLYTTYQDYEIMFHVSTLLPYTPNNRQQLLRKRHIGNDIVTIIFQEPGALPFTPKNIRSHFQHVFIIVRVHNPCTENVCYSMAVTRSKDAPPFGPPIPNGTTFRKSDVFRDFLLAKVINAENAAHKSDKFHTMATRTRQEYLKDLAENCVSNTPIDSSGKFNLISLTSKKKEKTKARAGAEQHSAGAIAWRVAAQDYAQGSEIDCILGISNEFVVLLDLRTKEVVFNCYCGDVIGWTPDSSTIKIFYGRGDHIFLQAAEGSVEDIRDIVQRLKVMTNGWETVDMTLRRNGLGQLGFHVKYDGTVAEVEDYGFAWQAGLRQGSRLVEICKVAVVTLSHDQMIDLLRTSVTVKVVIIPPFEDGTPRRGWPETYDMNASEPKTESETTTPGGRPPYRSNAPWQWSGPASHNSLPATKWTTPATPGHAQSLSRLPKQTPVVPFRESQPLHSKRPVSFPETPFAASPAGADRVPPYRQPSGSFSTPGSATYARYKPSPERYAAAPHPLLSFDPHFMHDGMSSGDSSSGGLTSQESTMERPKPEPLWHVPAQARLSAMTGSIGSKHPSRQDAAGKDSPNRHSKGEPQYSSHSSSNTLSSNASSSHSDDRWFDPLDPLEPEQDPFSKGGSSDSGIDTTLYTSSPSCMSLAKAPRPTKPHKPPGNIGLCGGGRESAGRPHPVDRRREVSPAPVVAGQNKGYRPKLYSSGSCTPPGLVGGSRDPPRQPSDMGSRAGYPTQVYKTASAETPRPSQLSQCSPFQLSTSVPKSFFSKQPAHNKHSTGWKRTDEPPPRPLPFTDSKKQVDTNAKNVFGQPRLRASLRDLRSPRKNYKSTIEDDLKKLIVMDNLGPEQERDTGQSPQKSLQRTLSDESLCSGRREPSFASPASLEPGLPSDVLFTSTCTFPSSTLPARRQHQHAHPPSGAPSTTPATGNGFPEKKSAISASELSLADGRDRPLRRLDPGMMPLPDTAAGLEWSSLVNAAKAYEVQRAVSLFSLNDPALSPEIPPAHSPVHSHLSLERGPQTPRATPTMSEESPLDLTGKVYQLEVMLKQLHTDLQKEKQDKVVLQSEVASLRQNNQRLQEESQAASEQLRKFAELFSREKKEL", "sequence_length": 1776, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c031bb89493e23e8323f85560b2b0f43b4110790454b281d79658abcfe083e9b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G3X9J0.json", "taxon_id": "10090", "uniprot_accession": "G3X9J0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spar-c-pf11881.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spar-c-pf11881.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O43166", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00595", "PF02145", "PF11881", "PF21022" ], "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0e85b67e51e8eb27cf423f2fc539b8cd1464ac7682028782773bacfd048cd748", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTSLKRSQTERPLATDRASVVGTDGTPKVHTDDFYMRRFRSQNGSLGSSVMAPVGPPRSEGSHHITSTPGVPKMGVRARIADWPPRKENIKESSRSSQEIETSSCLDSLSSKSSPVSQGSSVSLNSNDSAMLKSIQNTLKNKTRPSENMDSRFLMPEAYPSSPRKALRRIRQRSNSDITISELDVDSFDECISPTYKTGPSLHREYGSTSSIDKQGTSGESFFDLLKGYKDDKSDRGPTPTKLSDFLITGGGKGSGFSLDVIDGPISQRENLRLFKEREKPLKRRSKSETGDSSIFRKLRNAKGEELGKSSDLEDNRSEDSVRPWTCPKCFAHYDVQSILFDLNEAIMNRHNVIKRRNTTTGASAAAVASLVSGPLSHSASFSSPMGSTEDLNSKGSLSMDQGDDKSNELVMSCPYFRNEIGGEGERKISLSKSNSGSFSGCESASFESTLSSHCTNAGVAVLEVPKENLVLHLDRVKRYIVEHVDLGAYYYRKFFYQKEHWNYFGADENLGPVAVSIRREKPDEMKENGSPYNYRIIFRTSELMTLRGSVLEDAIPSTAKHSTARGLPLKEVLEHVVPELNVQCLRLAFNTPKVTEQLMKLDEQGLNYQQKVGIMYCKAGQSTEEEMYNNESAGPAFEEFLQLLGERVRLKGFEKYRAQLDTKTDSTGTHSLYTTYKDYEIMFHVSTMLPYTPNNKQQLLRKRHIGNDIVTIVFQEPGAQPFSPKNIRSHFQHVFVIVRVHNPCSDSVCYSVAVTRSRDVPSFGPPIPKGVTFPKSNVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAEKNVTNTPIDPSGKFPFISLASKKKEKSKPYPGAELSSMGAIVWAVRAEDYNKAMELDCLLGISNEFIVLIEQETKSVVFNCSCRDVIGWTSTDTSLKIFYERGECVSVGSFINIEEIKEIVKRLQFVSKGCESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLRQGSRLVEICKVAVATLSHEQMIDLLRTSVTVKVVIIPPHDDCTPRRSCSETYRMPVMEYKMNEGVSYEFKFPFRNNNKWQRNASKGPHSPQVPSQVQSPMTSRLNAGKGDGKMPPPERAANIPRSISSDGRPLERRLSPGSDIYVTVSSMALARSQCRNSPSNLSSSSDTGSVGGTYRQKSMPEGFGVSRRSPASIDRQNTQSDIGGSGKSTPSWQRSEDSIADQMAYSYRGPQDFNSFVLEQHEYTEPTCHLPAVSKVLPAFRESPSGRLMRQDPVVHLSPNKQGHSDSHYSSHSSSNTLSSNASSAHSDEKWYDGDRTESELNSYNYLQGTSADSGIDTTSYGPSHGSTASLGAATSSPRSGPGKEKVAPLWHSSSEVISMADRTLETESHGLDRKTESSLSLDIHSKSQAGSTPLTRENSTFSINDAASHTSTMSSRHSASPVVFTSARSSPKEELHPAAPSQLAPSFSSSSSSSSGPRSFYPRQGATSKYLIGWKKPEGTINSVGFMDTRKRHQSDGNEIAHTRLRASTRDLRASPKPTSKSTIEEDLKKLIDLESPTPESQKSFKFHALSSPQSPFPSTPTSRRALHRTLSDESIYNSQREHFFTSRASLLDQALPNDVLFSSTYPSLPKSLPLRRPSYTLGMKSLHGEFSASDSSLTDIQETRRQPMPDPGLMPLPDTAADLDWSNLVDAAKAYEVQRASFFAASDENHRPLSAASNSDQLEDQALAQMKPYSSSKDSSPTLASKVDQLEGMLKMLREDLKKEKEDKAHLQAEVQHLREDNLRLQEESQNASDKLKKFTEWVFNTIDMS", "sequence_length": 1804, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0e85b67e51e8eb27cf423f2fc539b8cd1464ac7682028782773bacfd048cd748", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/O43166.json", "taxon_id": "9606", "uniprot_accession": "O43166", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spar-c-pf11881.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spar-c-pf11881.yaml" } ], "pfam_ids": [ "PF00595", "PF02145", "PF11881", "PF21022" ], "protein_name": "Signal-induced proliferation-associated 1-like protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTYRAIPSDGVDLAASCGARVGDVLPGPHTGDYAPLGFWAQNGSMSQPLGESPATATATATATTRPSPTTPAMPKMGVRARVADWPPKREALREHSNPSPSQDTDGTKATKMAHSMRSIQNGQPPTSTPASSGSKAFHRLSRRRSKDVEFQDGWPRSPGRAFLPLRHRSSSEITLSECDAEDAGEPRGARHTGALPLFREYGSTSSIDVQGMPEQSFFDILNEFRSEQPDARGCQALTELLRADPGPHLMGGGGGAKGDSHNGQPAKDSLLPLQPTKEKEKARKKPARGLGGGDTVDSSIFRKLRSSKPEGEAGRSPGEADEGRSPPEASRPWVCQKSFAHFDVQSMLFDLNEAAANRVSVSQRRNTTTGASAASAASAMASLTASRAHSLGGLDPAFTSTEDLNCKENLEQDLGDDNSNDLLLSCPHFRNEIGGECERNVSFSRASVGSPSSGEGHLAEPALSAYRTNASISVLEVPKEQQRTQSRPRQYSIEHVDLGARYYQDYFVGKEHANYFGVDEKLGPVAVSIKREKLEDHKEHGPQYQYRIIFRTRELITLRGSILEDATPTATKHGTGRGLPLKDALEYVIPELNIHCLRLALNTPKVTEQLLKLDEQGLCRKHKVGILYCKAGQSSEEEMYNNEEAGPAFEEFLSLIGEKVCLKGFTKYAAQLDVKTDSTGTHSLYTMYQDYEIMFHVSTLLPYTPNNRQQLLRKRHIGNDIVTIIFQEPGALPFTPKNIRSHFQHVFIIVRVHNPCTDNVCYSMAVTRSKDAPPFGPPIPSGTTFRKSDVFRDFLLAKVINAENAAHKSDKFHTMATRTRQEYLKDLAENCVSNTPIDSTGKFNLISLTSKKKEKTKARAGAEQHSAGAIAWRVVAQDYAQGVEIDCILGISNEFVVLLDLRTKEVVFNCYCGDVIGWTPDSSTLKIFYGRGDHIFLQATEGSVEDIREIVQRLKVMTSGWETVDMTLRRNGLGQLGFHVKYDGTVAEVEDYGFAWQAGLRQGSRLVEICKVAVVTLTHDQMIDLLRTSVTVKVVIIPPFEDGTPRRGWPETYDMNTSEPKTEQESITPGGRPPYRSNAPWQWSGPASHNSLPASKWATPTTPGHAQSLSRPLKQTPIVPFRESQPLHSKRPVSFPETPYTVSPAGADRVPPYRQPSGSFSTPGSATYVRYKPSPERYTAAPHPLLSLDPHFSHDGTSSGDSSSGGLTSQESTMERQKPEPLWHVPAQARLSAIAGSSGNKHPSRQDAAGKDSPNRHSKGEPQYSSHSSSNTLSSNASSSHSDDRWFDPLDPLEPEQDPLSKGGSSDSGIDTTLYTSSPSCMSLAKAPRPAKPHKPPGSMGLCGGGREAAGRSHHADRRREVSPAPAVAGQSKGYRPKLYSSGSSTPTGLAGGSRDPPRQPSDMGSRVGYPAQVYKTASAETPRPSQLAQPSPFQLSASVPKSFFSKQPVRNKHPTGWKRTEEPPPRPLPFSDPKKQVDTNTKNVFGQPRLRASLRDLRSPRKNYKSTIEDDLKKLIIMDNLGPEQERDTGQSPQKGLQRTLSDESLCSGRREPSFASPAGLEPGLPSDVLFTSTCAFPSSTLPARRQHQHPHPPVGPGATPAAGSGFPEKKSTISASELSLADGRDRPLRRLDPGLMPLPDTAAGLEWSSLVNAAKAYEVQRAVSLFSLNDPALSPDIPPAHSPVHSHLSLERGPPTPRTTPTMSEEPPLDLTGKVYQLEVMLKQLHTDLQKEKQDKVVLQSEVASLRQNNQRLQEESQAASEQLRKFAEIFCREKKEL", "sequence_length": 1781, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e10e5d6971fa8f43e8a519b687c96ef9e192e1cd9fa73d3f4f66d286aaab5732", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O60292.json", "taxon_id": "9606", "uniprot_accession": "O60292", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spar-c-pf11881.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spar-c-pf11881.yaml" } ], "pfam_ids": [ "PF00595", "PF02145", "PF11881", "PF21022" ], "protein_name": "Signal-induced proliferation-associated 1-like protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDPRPSQAEKHKLGRAAAKLKDPSRTMQADDYFARKFKAINGSMGPATLNTSSSSEGGGGGGGPANGTPAVPKMGVRARVSEWPPKKDCSKDLACKTLWESRSQSSYESVTSIIQNGQNDQGDRQPEEQLDLDFVEAKYTIGDIFVHSPQRGLHPIRQRSNSDITISDIDTEDVLDQHAVNPNTGAALHREYGSTSSIDRQGLSGENVFAMLRGYRIESYDPKVTGSFGFPDFFPCDTAISPSLHAAAQISRGEFVRISGLDYMDGGLLMGRDRDKPFKRRLKSESVETSLFRKLRAVKSEHETFKFTSDLEEGRLDRGIRPWSCQRCFAHYDVQSILFNINEAMATRASVGKRKNITTGASAASQTPVPVGPAGGCESPLGSKEDLNSKENPDADEGDGKSNDLVLSCPYFRNETGGEGDRRIALSRANSASFSSGESCSFESSLSSHCTNAGVSVLEVPRESQPIHREKVKRYIIEHVDLGAYYYRKFFYGKEHQNYFGIDENLGPVAVSIRREKVEDPREKEGSQFNYRVAFRTSELTTLRGAILEDAVPSTARHGTARGLPLKEVLEYVIPELSIQCLRQAANSPKVPEQLLKLDEQGLSFQHKIGILYCRAGQSTEEEMYNNETAGPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDFELMFHVSTLLPYMPNNRQQLLRKRHIGNDIVTIVFQEPGALPFTPKNIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKGVTFPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAENFVTTATVDTSAKFSFITLGAKKKERVKPRKDAHLFSIGAIMWHVVARDFGQSADIECLLGISNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLVSIKAFYERGECLLLSSVDNRSEDIREIVQRLLIVTRGCETVEMTLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIQPHEDGSPRRGCSELCRIPMVEYKLDSEGTPCEYKTPFRRNTTWHRVPTPALQPVSRASPVPGTPDRLQCQPLLQQAQAAIPRSTSFDRKLPDGTRSSPSNQSSSSDPGPGGSGPWRPQVGYDGCPSPLLLEHQGPGSVECDGTGEQEDLLEGGRLPETKWHGPPSKVLSSYKERVLQKDGSCKESPNKLSHIGDKSCSSHSSSNTLSSNTSSNSDDKHFGSGDLMDPELLGLTYIKGASTDSGIDTTPCMPATILGPVHLTGSRSLMHSRAEQWADAADVSVADDDPAKMYALHGYASAISSSAADGSMGDLSEVSSHSSGSQHSGSPSAHCSKSTGSLDSSKVYIVTHGGGQQAPGAVTKPYHRQGAANKYVIGWKKSEGSPPPEEPEVTECPRIYGEMDIMSTATQHPAVVGDSVSETQHVLSKDDFLKLMLPDSPLVEEGRRKFSFYGNVSPRRSLYRTLSDESVCSNRRGSSFASSRSSILEQALPNDILFSTTPPYHSTLPPRTHPAPSMGSLRNEFWFSDGSLSDKSKCADPGLMPLPDTAAGLDWSHLVDAARAFEGLDSDEELGLLCHHASYLDQRVASFCTLTDLQHGQELEGAPELSLCVDPTSGKEFMDTPGERSPSTLTGKVNQLELILRQLQTDLRKEKQDKAVLQAEVQHLRQDNMRLQEESQTATAQLRKFTEWFFSTIDKKA", "sequence_length": 1722, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "02eabfc9d7e02f8e3f29fc90dc487b9426354bc247fe761b5631cf004fb3033d", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q80TE4.json", "taxon_id": "10090", "uniprot_accession": "Q80TE4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spar-c-pf11881.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spar-c-pf11881.yaml" } ], "pfam_ids": [ "PF00595", "PF02145", "PF11881", "PF21022" ], "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSLKRSQTERPVTADRASVVSTDGAPKVHTDDFYMRRFRSQNGSLGSSVMAAVGPPRSEGPHHITSTPGVPKMGVRARIADWPPRKENVKESSRSSQEIETSSCLESLSSKGSPVSQGSSVSLNSNDSAMLKSIQNTLKNKTGPAESMDSRFLMPEAYPSSPRKALRRIRQRSNSDITISELDVDSFDECISPTYKSGPSLHREYGSTSSIDKQGTSGDSFFDLLKGYKDDRSDRGPTPTKLSDFLITGGGKGSGFSLDVIDGPISQRENLRLFKEREKPLKRRSKSETGDSSIFRKLRNAKGEELGKSSDLEDNRSEDSVRPWTCPKCFAHYDVQSILFDLNEAIMNRHNVIKRRNTTTGASAAAVASLVSGPLSHSASFSSPMGSTEDLNSKGSLGMDQGDDKSNELVMSCPYFRNEIGGEGERKISLSKSNSGSFSGCESTSFESALSSHCTNAGVAVLEVPKESLMLHLDRVKRYTVEHVDLGAYYYRKFFYQKEHWNYFGADENLGPVAVSIRREKPEDMKENGSPYNYRIIFRTSELMTLRGSVLEDAIPSTAKHSTARGLPLKEVLEHVIPELNVQCLRLAFNTPKVTEQLMKLDEQGLNYQQKVGIMYCKAGQSTEEEMYNNESAGPAFEEFLQLLGERVRLKGFEKYRAQLDTKTDSTGTHSLYTTYKDYEIMFHVSTMLPYTPNNKQQLLRKRHIGNDIVTIVFQEPGAQPFSPKNIRSHFQHVFVIVRAHNPCTESVCYSVAVTRSRDVPSFGPPIPKGVTFPKSNVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAEKNVTNTPIDPSGKFPFISLASKKKEKSKPYPGAELSSMGAIVWAVRAKDYNKAMEFDCLLGISSEFIVLIEQETKSVAFNCSCRDVIGWTSSDTSLKIFYERGECVSVESFISGEDIKEIVRRLQFVSKGCESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLRQGSRLVEICKVAVATLSHEQMIDLLRTSVTVKVVIIPPHDDCTPRRSCSETYRMPVMEYQMNEGISYEFKFPFRNNNKWQRNASKGAHSPQVPSQLQSPMTSRLNAGKGDGKMPPPERAANIPRSISSDGRPLERRLSPGSDIYVTVSSMALARSQCRNSPSNLSSSSETGSGGGTYRQKSMPEGFGVSRRSPASIDRQNTQSDISGSGKSTPSWQRSEDSLADQMEPTCHLPAVSKVLPAFRESPSGRLMRQDPVVHLSPNKQGHSDSHYSSHSSSNTLSSNASSAHSDEKWYDGDRTESDLNSYNYLQGTSADSGIDTASYGPSHGSTASLGASTSSPRSGPGKEKVAPLWHSSSEVLSLADRTLETEGHGMDRKAESSLSLDIHSKSQGGSSPLSRENSTFSINDAASHTSTMSSRHSASPVVFSSARSSPKEELHPTASSQLAPSFSSSSSSSSGPRTFYPRQGATSKYLIGWKKPEGTINSVGFMDTRKRHQSDGNEIAHTRLRASTRDLQASPKPTSKSTIEEDLKKLIDLESPTPESQKNFKFHALSSPQSPFPTTPTSRRALHRTLSDESIYSSQREHFFTSRASLLDQALPNDVLFSSTYPSLPKSLPLRRPSYTLGMKSLHGEFSASDSSLTDIQETRRQPIPDPGLMPLPDAASDLDWSNLVDAAKAYEVQRASFFAASDENHRPLSAASNSDQLEEQALVQMKSYSSKDPSPTLASKVDQLEGMLKMLREDLKKEKEDKAQLQAEVEHLREDNLRLQEESQNASDKLKKFTEWVFNTIDMS", "sequence_length": 1782, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e2dfd5da53d4e120d0eae697ccc62230828e27ba283e87ea83e88b368d6206a9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C0T5.json", "taxon_id": "10090", "uniprot_accession": "Q8C0T5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spar-c-pf11881.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spar-c-pf11881.yaml" } ], "pfam_ids": [ "PF00595", "PF02145", "PF11881", "PF21022" ], "protein_name": "Signal-induced proliferation-associated 1-like protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDPRQSQEEKHKLGRASSKFKDPPRIMQSDDYFARKFKAINGNMGPTTSLNASNSNETGGGGPANGTPAVPKMGVRARVSEWPPKKDCSKELTCKALWESRSQTSYESITSVLQNGQSDQSEGQQDEQLDLDFVEAKYTIGDIFVHSPQRGLHPIRQRSNSDVTISDIDAEDVLDQNAVNPNTGAALHREYGSTSSIDRQGLSGENFFAMLRGYRVENYDHKAMVPFGFPEFFRCDPAISPSLHAAAQISRGEFVRISGLDYVDSALLMGRDRDKPFKRRLKSESVETSLFRKLRTVKSEHETFKFTSELEESRLERGIRPWNCQRCFAHYDVQSILFNINEAMATRANVGKRKNITTGASAASQTQMPTGQTGNCESPLGSKEDLNSKENLDADEGDGKSNDLVLSCPYFRNETGGEGDRRIALSRANSSSFSSGESCSFESSLSSHCTNAGVSVLEVPRENQPIHREKVKRYIIEHIDLGAYYYRKFFYGKEHQNYFGIDENLGPVAVSIRREKVEDAKEKEGSQFNYRVAFRTSELTTLRGAILEDAIPSTARHGTARGLPLKEVLEYVIPELSIQCLRQASNSPKVSEQLLKLDEQGLSFQHKIGILYCKAGQSTEEEMYNNETAGPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDYELMFHVSTLLPYMPNNRQQLLRKRHIGNDIVTIVFQEPGALPFTPKSIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKGVTFPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAENFVTTATVDTSVKFSFITLGAKKKEKVKPRKDAHLFSIGAIMWHVIARDFGQSADIECLLGISNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLVSIKVFYERGECVLLSSVDNCAEDIREIVQRLVIVTRGCETVEMTLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIQPHDDGSPRRGCSELCRIPMVEYKLDSEGTPCEYKTPFRRNTTWHRVPTPALQPLSRASPIPGTPDRLPCQQLLQQAQAAIPRSTSFDRKLPDGTRSSPSNQSSSSDPGPGGSGPWRPQVGYDGCQSPLLLEHQGSGPLECDGAREREDTMEASRHPETKWHGPPSKVLGSYKERALQKDGSCKDSPNKLSHIGDKSCSSHSSSNTLSSNTSSNSDDKHFGSGDLMDPELLGLTYIKGASTDSGIDTAPCMPATILGPVHLAGSRSLIHSRAEQWADAADVSGPDDEPAKLYSVHGYASTISAGSAAEGSMGDLSEISSHSSGSHHSGSPSAHCSKSSGSLDSSKVYIVSHSSGQQVPGSMSKPYHRQGAVNKYVIGWKKSEGSPPPEEPEVTECPGMYSEMDVMSTATQHQTVVGDAVAETQHVLSKEDFLKLMLPDSPLVEEGRRKFSFYGNLSPRRSLYRTLSDESICSNRRGSSFGSSRSSVLDQALPNDILFSTTPPYHSTLPPRAHPAPSMGSLRNEFWFSDGSLSDKSKCADPGLMPLPDTATGLDWTHLVDAARAFEGLDSDEELGLLCHHTSYLDQRVASFCTLTDMQHGQDLEGAQELPLCVDPGSGKEFMDTTGERSPSPLTGKVNQLELILRQLQTDLRKEKQDKAVLQAEVQHLRQDNMRLQEESQTATAQLRKFTEWFFTTIDKKS", "sequence_length": 1722, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3138944dd7bf4c9c11dcb6d2ca4396ab9816ba73ef3e587dcbc9ac51417f4c17", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9P2F8.json", "taxon_id": "9606", "uniprot_accession": "Q9P2F8", "uniprot_release": "2026_03" } ], "pfam_id": "PF11881", "short_name": "SPAR_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/far-sin-stripak-complex-go0090443.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090443", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/far-sin-stripak-complex-go0090443.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cellular-response-to-pheromone-go0071444.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071444", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cellular-response-to-pheromone-go0071444.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/re-entry-into-mitotic-cell-cycle-after-pheromone-arrest-go0000321.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000321", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/re-entry-into-mitotic-cell-cycle-after-pheromone-arrest-go0000321.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-torc2-signaling-go1903939.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1903939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-torc2-signaling-go1903939.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/far11-strp-c-terminal-ipr021819.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/far11-strp-c-terminal-ipr021819.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/far11-strp-n-terminal-ipr012486.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/far11-strp-n-terminal-ipr012486.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3402-pf11882.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3402-pf11882.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/n1221-pf07923.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07923", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/n1221-pf07923.yaml" } ], "pfam_ids": [ "PF07923", "PF11882" ], "protein_name": "Factor arrest protein 11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNASGRSHSKGPIIRSVSLEDLKRNSSFKGNLKYKDEVTSHKEPQVGTLSNEELLKDLDNMLRGKLNMGRNSFHADKRNKSDGNISALTFKARSGLEGDIRTIDIQQDSSDENDNFKFSDDGVNKDRNNEKDNNTDNAVEFQDDAEEAEEENEDESFANVDELDGFDLNKVSDGKHVPINEKGEVDYNMPVDKEFQKSLDQCAASLEERSSAPYALQRAVDWELKMFYSLEDELSEWFCSSDYMHFGQTQTLFKQKITQPQLFFDDENYAASVVECLIEDIPNSLASNLLALSYISMGCFAFTNSKSEHTKIIRRNNLMLVPHIQEIVHAFKKIAISCRDDNRNLKKQTILLFHSSTILYFICSICIEGRGENPEAVNVVIDAFEKTDLLEFLTKYIENWRWNSRLAMRIRNMISLLFKLIVLQFGDSSVYKQTKSSIYNLHGLTYPSKHPEKLSISPLHYQAFREDITSRFPDYNMPSSGLPKDVDKSESLSQFLEIPRPKSKNPLNMALIVPEKHIATPAPSPPSSPQLMHLGEGPRPRKSFQTNMAYPCLYPSDNEGSEDDTLEDRIDLNIERKPDNDIVIPFSTEEAARILSESLEIKLSTKQLWYERDLFMITERGWKQQLENEPYDYAALNHDANSSKEEKSAICIMQRIDKYYKSCLSSFNSLVFVLLQTMESSLTNNFHRKSEVSDKNLLNMLTPQLEIVRAKELSLKSAAGILHALLKWFKLSHILKFEHLAVVIHDSRYINTCASILSKYSEVYPERVFNKYVQTPNSFWKECSLSNESYRESYSVDDSGEVDTEIMPSFAYLLRILRKVTGNKTQRLKELPLSIGILFKRYYRLFNLDMYHPILKITRELTPFKNKRWKSEHMELISGVYLYEKLELTDNWVTGKDISGELSDACGQEIALRALLQFYNFQHYEISMEDLGYGHRNSSSQDLLNKESEYLNI", "sequence_length": 953, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d5d598a443d3f9c72e0e198d759949271ae3580be085285877a6a7e940d90205", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53917.json", "taxon_id": "559292", "uniprot_accession": "P53917", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/far11-strp-c-terminal-ipr021819.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/far11-strp-c-terminal-ipr021819.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/far11-strp-n-terminal-ipr012486.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/far11-strp-n-terminal-ipr012486.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3402-pf11882.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3402-pf11882.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/n1221-pf07923.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07923", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/n1221-pf07923.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5VSL9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF07923", "PF11882" ], "protein_name": "Striatin-interacting protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "eac86d1dabd226fe0a32ff593070b0d461da3040af880378f2a186c0daed1416", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEPAVGGPGPLIVNNKQPQPPPPPPPAAAQPPPGAPRAAAGLLPGGKAREFNRNQRKDSEGYSESPDLEFEYADTDKWAAELSELYSYTEGPEFLMNRKCFEEDFRIHVTDKKWTELDTNQHRTHAMRLLDGLEVTAREKRLKVARAILYVAQGTFGECSSEAEVQSWMRYNIFLLLEVGTFNALVELLNMEIDNSAACSSAVRKPAISLADSTDLRVLLNIMYLIVETVHQECEGDKAEWRTMRQTFRAELGSPLYNNEPFAIMLFGMVTKFCSGHAPHFPMKKVLLLLWKTVLCTLGGFEELQSMKAEKRSILGLPPLPEDSIKVIRNMRAASPPASASDLIEQQQKRGRREHKALIKQDNLDAFNERDPYKADDSREEEEENDDDNSLEGETFPLERDEVMPPPLQHPQTDRLTCPKGLPWAPKVREKDIEMFLESSRSKFIGYTLGSDTNTVVGLPRPIHESIKTLKQHKYTSIAEVQAQMEEEYLRSPLSGGEEEVEQVPAETLYQGLLPSLPQYMIALLKILLAAAPTSKAKTDSINILADVLPEEMPTTVLQSMKLGVDVNRHKEVIVKAISAVLLLLLKHFKLNHVYQFEYMAQHLVFANCIPLILKFFNQNIMSYITAKNSISVLDYPHCVVHELPELTAESLEAGDSNQFCWRNLFSCINLLRILNKLTKWKHSRTMMLVVFKSAPILKRALKVKQAMMQLYVLKLLKVQTKYLGRQWRKSNMKTMSAIYQKVRHRLNDDWAYGNDLDARPWDFQAEECALRANIERFNARRYDRAHSNPDFLPVDNCLQSVLGQRVDLPEDFQMNYDLWLEREVFSKPISWEELLQ", "sequence_length": 837, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "eac86d1dabd226fe0a32ff593070b0d461da3040af880378f2a186c0daed1416", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VSL9.json", "taxon_id": "9606", "uniprot_accession": "Q5VSL9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/far11-strp-c-terminal-ipr021819.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/far11-strp-c-terminal-ipr021819.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/far11-strp-n-terminal-ipr012486.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/far11-strp-n-terminal-ipr012486.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/n1221-pf07923.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07923", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/n1221-pf07923.yaml" } ], "pfam_ids": [ "PF07923", "PF11882" ], "protein_name": "Striatin-interacting protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPAAAGPGPLIVNNKQPQPPPPPPPATAQPPPGAPRAAGGLLPGGKAREFNRNQRKDSEGYSESPDLEFEYADTDKWAAELAELYSYTEGPEFLMNRKCFEEDFRIHVSDKKWTELDTNQHRTHAMRLLDGLEVTAREKRLKVARAILYVAQGTFGECSSEAEVQFWMRYNIFLLLEVGTFNALVELLNMEIDNSAACSSAVRKPAISLADSTDLRVLLNIMYLIVETVHQDCDGDKAEWRTMRQTFRAELGSPLYNNEPFAIMLFGMVTKFCSGHAPHFPMKKVLLLLWKTVLCTLGGFEELQSMKAEKRTLLGLPPLPEDSIKVIRNMRAASPPASASDLIEQQQKRGRREHKALIKQDNLDAFNERDPYKADDSREEEEENDDDSSLEGEAFPLERDEVMPPPLQHPQTDRLTCPKGLPWAPKVREKDIEMFLESSRSKFIGYTLGSDTNTVVGLPRPIHESIKTLKQHKYTSIAEVQAQMEEEYLRSPLSGGEEEVEQVPAETLYQGLLPSLPQYMIALLKILLAAAPTSKAKTDSINILADVLPEEMPTTVLQSMKLGVDVNRHKEVIVKAISAVLLLLLKHFKLNHIYQFEYMAQHLVFANCIPLILKFFNQNIMSYITAKNSISVLDYPHCVVNELPELTAESLEAGDNNQFCWRNLFSCINLLRILNKLTKWKHSRTMMLVVFKSAPILKRALKVKQAMMQLYVLKLLKVQTKYLGRQWRKSNMKTMSAIYQKVRHRLNDDWAYGNDLDARPWDFQAEECALRANIERFNARRYDRTHSNPDFLPVDNCLQSVLGQRVDLPEDFQMNYDLWLEREVFSKPISWEELLQ", "sequence_length": 837, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "84936111add70dac541963c23aaf739c2f9c43c70da4665c3165fbef6f21f0ef", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C079.json", "taxon_id": "10090", "uniprot_accession": "Q8C079", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/far11-strp-c-terminal-ipr021819.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/far11-strp-c-terminal-ipr021819.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/far11-strp-n-terminal-ipr012486.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/far11-strp-n-terminal-ipr012486.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/n1221-pf07923.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07923", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/n1221-pf07923.yaml" } ], "pfam_ids": [ "PF07923", "PF11882" ], "protein_name": "Striatin-interacting proteins 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDDPAAPGPAGSPANDNGNGNGNGNGNGNGGKGKPAVPKGRETFRNQRRESEGSVDCPTLEFEYGDSDGHAAELSELYSYTENLEFTTNRKCFEEDFRTQVQDTKEWLELEEDAQKTYVMGLLDRLEVVSREKRLKVARAVLYLAQGTFGECDSEVDVLHWSRYNCFLLYQMGTFSAFLELLHMEIDNSQASSSALRKPAVSIADSTELRVLLSVMYLMVENIRLEREIDPCGWRTARETFRTELSFSTHNEEPFALLLFSMVTKFCSGLAPHFPIKKVLLLLWKVVMFTLGGFEHLQALKIQKRAELGLPPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYNERDLFKTEEPATEEEEESAADGERTLDGELDLLEQDPLVPPPPSQTPLSTDRVAFPKGLPWAPKVRQKDIEHFLEMSRNKFIGFTLGQDTDTLVGLPRPIHESVKTLKQHKYISIADIQIKNEEELEKCPLSLGEEVVPETPSEILYQGMLYSLPQYMIALLKILLAAAPTSKAKTDSINILADVLPEEMPVTVLQSMKLGIDVNRHKEIIVKSISALLLLLLKHFKLNHIYQFEYVSQHLVFANCIPLILKFFNQNILSYITAKNSISVLDYPCCTIQDLPELTTESLEAGDNSQFCWRNLFSCINLLRLLNKLTKWKHSRTMMLVVFKSAPILKRALKVKQAMLQLYVLKLLKIQTKYLGRQWRKSNMKTMSAIYQKVRHRMNDDWAYGNDIDARPWDFQAEECTLRANIEAFNSRRYDKPQDSEFSPVDNCLQSVLGQRLDLPEDFHYSYELWLEREVFSQPICWEELLQNH", "sequence_length": 844, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "52626ea42d181fe55eecc153dc94c28e42df29b6b57c44851b23ed3528e4d9c4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C9H6.json", "taxon_id": "10090", "uniprot_accession": "Q8C9H6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/far11-strp-c-terminal-ipr021819.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/far11-strp-c-terminal-ipr021819.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/far11-strp-n-terminal-ipr012486.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/far11-strp-n-terminal-ipr012486.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3402-pf11882.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3402-pf11882.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/n1221-pf07923.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07923", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/n1221-pf07923.yaml" } ], "pfam_ids": [ "PF07923", "PF11882" ], "protein_name": "Striatin-interacting protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDPAAPGTGGPPANGNGNGGGKGKQAAPKGREAFRSQRRESEGSVDCPTLEFEYGDADGHAAELSELYSYTENLEFTNNRRCFEEDFKTQVQGKEWLELEEDAQKAYIMGLLDRLEVVSRERRLKVARAVLYLAQGTFGECDSEVDVLHWSRYNCFLLYQMGTFSTFLELLHMEIDNSQACSSALRKPAVSIADSTELRVLLSVMYLMVENIRLERETDPCGWRTARETFRTELSFSMHNEEPFALLLFSMVTKFCSGLAPHFPIKKVLLLLWKVVMFTLGGFEHLQTLKVQKRAELGLPPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYNERDLFKTEEPATEEEEESAGDGERTLDGELDLLEQDPLVPPPPSQAPLSAERVAFPKGLPWAPKVRQKDIEHFLEMSRNKFIGFTLGQDTDTLVGLPRPIHESVKTLKQHKYISIADVQIKNEEELEKCPMSLGEEVVPETPCEILYQGMLYSLPQYMIALLKILLAAAPTSKAKTDSINILADVLPEEMPITVLQSMKLGIDVNRHKEIIVKSISTLLLLLLKHFKLNHIYQFEYVSQHLVFANCIPLILKFFNQNILSYITAKNSISVLDYPCCTIQDLPELTTESLEAGDNSQFCWRNLFSCINLLRLLNKLTKWKHSRTMMLVVFKSAPILKRALKVKQAMLQLYVLKLLKLQTKYLGRQWRKSNMKTMSAIYQKVRHRMNDDWAYGNDIDARPWDFQAEECTLRANIEAFNSRRYDRPQDSEFSPVDNCLQSVLGQRLDLPEDFHYSYELWLEREVFSQPICWEELLQNH", "sequence_length": 834, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b00cd1e9da8769db392cb3cad71e62a032245e201d17495c98cfd83598b66e1e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ULQ0.json", "taxon_id": "9606", "uniprot_accession": "Q9ULQ0", "uniprot_release": "2026_03" } ], "pfam_id": "PF11882", "short_name": "DUF3402", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 9, "discovery_scanned": true, "example_count": 9, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O64777", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00954", "PF01453", "PF07714", "PF08276", "PF11883" ], "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase At1g61430", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e15d30d6de6753887390c7a59f184bdabf3509353ee85ff32b716190b64ae854", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGKKRIVFFAYLPFFTIFMSFSFAGITKESPFSIGQTLSSSNGVYELGFFSLNNSQNQYLGIWFKSIIPQVVVWVANREKPVTDSAANLGISSNGSLLLSNGKHGVVWSTGDIFASNGSRAELTDHGNLVFIDKVSGRTLWQSFEHLGNTLLPTSIMMYNLVAGEKRGLTAWKSYTDPSPGEFVALITPQVPSQGIIMRGSTRYYRTGPWAKTRFTGSPQMDESYTSPFILTQDVNGSGYFSFVERGKPSRMILTSEGTMKVLVHNGMDWESTYEGPANSCDIYGVCGPFGLCVVSIPPKCKCFKGFVPKFAKEWKKGNWTSGCVRRTELHCQGNSSGKDANVFYTVPNIKPPDFYEYANSQNAEECHQNCLHNCSCLAFSYIPGIGCLMWSKDLMDTRQFSAAGELLSIRLARSELDVNKRKMTIVASTVSLTLFVIFGFAAFGFWRCRVEHNAHISNDAWRNFLQSQDVPGLEFFEMNAIQTATNNFSLSNKLGPGGFGSVYKARNGKLQDGREIAVKRLSSSSGQGKQEFMNEIVLISKLQHRNLVRVLGCCVEGTEKLLIYGFLKNKSLDTFVFDARKKLELDWPKRFEIIEGIARGLLYLHRDSRLRVIHRDLKVSNILLDEKMNPKISDFGLARMFQGTQYQEKTRRVVGTLGYMSPEYAWTGVFSEKSDIYSFGVLLLEIISGKKISSFSYGEEGKALLAYAWECWCETREVNFLDQALADSSHPSEVGRCVQIGLLCVQHEPADRPNTLELLSMLTTTSDLPLPKKPTFVVHTRKDESPSNDSMITVNEMTESVIQGR", "sequence_length": 806, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e15d30d6de6753887390c7a59f184bdabf3509353ee85ff32b716190b64ae854", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O64777.json", "taxon_id": "3702", "uniprot_accession": "O64777", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/b-lectin-pf01453.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01453", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/b-lectin-pf01453.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O64782", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00954", "PF01453", "PF07714", "PF08276", "PF11883" ], "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-29", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e3bc75005d8e383ca5ba1fe88f98c5789246c8db8cef50c6dfe54bee1a349ca2", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGMVLFACLLLLIIFPTCGYAAINTSSPLSIRQTLSSPGGFYELGFFSPNNTQNQYVGIWFKKIVPRVVVWVANRDTPVTSSAANLTISSNGSLILLDGKQDVIWSTGKAFTSNKCHAELLDTGNFVVIDDVSGNKLWQSFEHLGNTMLPQSSLMYDTSNGKKRVLTTWKSNSDPSPGEFSLEITPQIPTQGLIRRGSVPYWRCGPWAKTRFSGISGIDASYVSPFSVVQDTAAGTGSFSYSTLRNYNLSYVTLTPEGKMKILWDDGNNWKLHLSLPENPCDLYGRCGPYGLCVRSDPPKCECLKGFVPKSDEEWGKGNWTSGCVRRTKLSCQAKSSMKTQGKDTDIFYRMTDVKTPDLHQFASFLNAEQCYQGCLGNCSCTAFAYISGIGCLVWNGELADTVQFLSSGEFLFIRLASSELAGSSRRKIIVGTTVSLSIFLILVFAAIMLWRYRAKQNDAWKNGFERQDVSGVNFFEMHTIRTATNNFSPSNKLGQGGFGPVYKGKLVDGKEIGVKRLASSSGQGTEEFMNEITLISKLQHRNLVRLLGYCIDGEEKLLIYEFMVNKSLDIFIFDPCLKFELDWPKRFNIIQGIARGLLYLHRDSRLRVIHRDLKVSNILLDDRMNPKISDFGLARMFQGTQYQDNTRRVVGTLGYMSPEYAWAGLFSEKSDIYSFGVLMLEIISGKRISRFIYGDESKGLLAYTWDSWCETGGSNLLDRDLTDTCQAFEVARCVQIGLLCVQHEAVDRPNTLQVLSMLTSATDLPVPKQPIFAVHTLNDMPMLQANSQDFLSVNEMTESMIQGR", "sequence_length": 805, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e3bc75005d8e383ca5ba1fe88f98c5789246c8db8cef50c6dfe54bee1a349ca2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O64782.json", "taxon_id": "3702", "uniprot_accession": "O64782", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3403-pf11883.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3403-pf11883.yaml" } ], "pfam_ids": [ "PF00954", "PF01453", "PF07714", "PF08276", "PF11883" ], "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKIGIVFFASLLFLLIIFPSCAFAAITRASPLSIGQTLSSPNGTYELGFFSPNNSRNQYVGIWFKNITPRVVVWVANRDKPVTNNAANLTINSNGSLILVEREQNVVWSIGETFSSNELRAELLENGNLVLIDGVSERNLWESFEHLGDTMLLESSVMYDVPNNKKRVLSSWKNPTDPSPGEFVAELTTQVPPQGFIMRGSRPYWRGGPWARVRFTGIPEMDGSHVSKFDISQDVAAGTGSLTYSLERRNSNLSYTTLTSAGSLKIIWNNGSGWVTDLEAPVSSCDVYNTCGPFGLCIRSNPPKCECLKGFVPKSDEEWNKRNWTGGCMRRTNLSCDVNSSATAQANNGDIFDIVANVKPPDFYEYLSLINEEDCQQRCLGNCSCTAFSYIEQIGCLVWNRELVDVMQFVAGGETLSIRLASSELAGSNRVKIIVASIVSISVFMILVFASYWYWRYKAKQNDSNPIPLETSQDAWREQLKPQDVNFFDMQTILTITNNFSMENKLGQGGFGPVYKGNLQDGKEIAIKRLSSTSGQGLEEFMNEIILISKLQHRNLVRLLGCCIEGEEKLLIYEFMANKSLNTFIFDSTKKLELDWPKRFEIIQGIACGLLYLHRDSCLRVVHRDMKVSNILLDEEMNPKISDFGLARMFQGTQHQANTRRVVGTLGYMSPEYAWTGMFSEKSDIYAFGVLLLEIITGKRISSFTIGEEGKTLLEFAWDSWCESGGSDLLDQDISSSGSESEVARCVQIGLLCIQQQAGDRPNIAQVMSMLTTTMDLPKPKQPVFAMQVQESDSESKTMYSVNNITQTAIVGR", "sequence_length": 814, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1833d74ac58837414a679386cfe8905aa4322779d9dd72c4eb27a1174d00262c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O64783.json", "taxon_id": "3702", "uniprot_accession": "O64783", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/b-lectin-pf01453.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01453", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/b-lectin-pf01453.yaml" } ], "pfam_ids": [ "PF00954", "PF01453", "PF07714", "PF08276", "PF11883" ], "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MREIHSLFSLSLFLISSSLSVALDYNVITPKEFLKDGDTLSSPDQVFQLGFFSLDQEEQPQHRFLGLWYMEPFAVVWVANRNNPLYGTSGFLNLSSLGDLQLFDGEHKALWSSSSSSTKASKTANNPLLKISCSGNLISSDGEEAVLWQSFDYPMNTILAGMKLGKNFKTQMEWSLSSWKTLKDPSPGDFTLSLDTRGLPQLILRKNGDSSYSYRLGSWNGLSFTGAPAMGRENSLFDYKFTSSAQEVNYSWTPRHRIVSRLVLNNTGKLHRFIQSKQNQWILANTAPEDECDYYSICGAYAVCGINSKNTPSCSCLQGFKPKSGRKWNISRGAYGCVHEIPTNCEKKDAFVKFPGLKLPDTSWSWYDAKNEMTLEDCKIKCSSNCSCTAYANTDIREGGKGCLLWFGDLVDMREYSSFGQDVYIRMGFAKIEFKGREVVGMVVGSVVAIAVVLVVVFACFRKKIMKRYRGENFRKGIEEEDLDLPIFDRKTISIATDDFSYVNFLGRGGFGPVYKGKLEDGQEIAVKRLSANSGQGVEEFKNEVKLIAKLQHRNLVRLLGCCIQGEECMLIYEYMPNKSLDFFIFDERRSTELDWKKRMNIINGVARGILYLHQDSRLRIIHRDLKAGNVLLDNDMNPKISDFGLAKSFGGDQSESSTNRVVGTYGYMPPEYAIDGHFSVKSDVFSFGVLVLEIITGKTNRGFRHADHDLNLLGHVWKMWVEDREIEVPEEEWLEETSVIPEVLRCIHVALLCVQQKPEDRPTMASVVLMFGSDSSLPHPTQPGFFTNRNVPDISSSLSLRSQNEVSITMLQGR", "sequence_length": 815, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "34ce779fb39af5c33b538cab53e2ad845bb1266a5bce4822eabdd60cb1099802", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O81833.json", "taxon_id": "3702", "uniprot_accession": "O81833", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3660-pf12398.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3660-pf12398.yaml" } ], "pfam_ids": [ "PF00954", "PF01453", "PF07714", "PF08276", "PF11883", "PF12398" ], "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SRK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRGELPNKHHSYTFFVFLFFFLILFPDLSISVNTLSATESLTISSNKTIVSPGGVFELGFFRILGDSWYLGIWYKKISQRTYVWVANRDTPLSNPIGILKISNANLVILDNSDTHVWSTNLTGAVRSSVVAELLDNGNFVLRGSKINESDEFLWQSFDFPTDTLLPQMKLGRDHKRGLNRFVTSWKSSFDPSSGSFMFKLETLGLPEFFGFTSFLEVYRSGPWDGLRFSGILEMQQWDDIIYNFTENREEVAYTFRVTDHNSYSRLTINTVGRLEGFMWEPTQQEWNMFWFMPKDTCDLYGICGPYAYCDMSTSPTCNCIKGFQPLSPQDWASGDVTGRCRRKTQLTCGEDRFFRLMNMKIPATTAAIVDKRIGLKECEEKCKTHCNCTAYANSDIRNGGSGCIIWIGEFRDIRNYAADGQDLFVRLAAAEFGERRTIRGKIIGLIIGISLMLVLSFIIYCFWKKKQKRARATAAPIGYRDRIQELIITNGVVMSSGRRLLGEEEDLELPLTEFETVVMATENFSDSNILGRGGFGIVYKGRLLDGQEIAVKRLSEMSSQGTNEFKNEVRLIARLQHINLVRLLSCCIYADEKILIYEYLENGSLDSHLFETTQSSNKLNWQTRFSIINGIARGLLYLHQDSRFKIIHRDLKASNVLLDKNMTPKISDFGMARIFERDETEANTRKVVGTYGYMSPEYAMEGIFSVKSDVFSFGVLVLEIVSGKRNRGFHNSGQDNNLLGYTWENWKEGKGLEIVDSIIVDSSSSMSLFQPHEVLRCIQIGLLCVQERAEDRPKMSSVVLMLGSEKGEIPQPKRPGYCVGRSSLDTADSSSSTKRDSESLTVNQITVSVINAR", "sequence_length": 853, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "49819b7dede907ee93894d381addbc50bb3835131bb67ee48ee264ab5541110d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DH86.json", "taxon_id": "3702", "uniprot_accession": "P0DH86", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3660-pf12398.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3660-pf12398.yaml" } ], "pfam_ids": [ "PF00954", "PF01453", "PF07714", "PF08276", "PF11883", "PF12398" ], "protein_name": "Receptor-like serine/threonine-protein kinase SD1-7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSVPNYHHSFFIFLILILFLAFSVSPNTLSATESLTISSNKTIISPSQIFELGFFNPASSSRWYLGIWYKIIPIRTYVWVANRDNPLSSSNGTLKISGNNLVIFDQSDRPVWSTNITGGDVRSPVAAELLDNGNFLLRDSNNRLLWQSFDFPTDTLLAEMKLGWDQKTGFNRILRSWKTTDDPSSGEFSTKLETSEFPEFYICSKESILYRSGPWNGMRFSSVPGTIQVDYMVYNFTASKEEVTYSYRINKTNLYSRLYLNSAGLLQRLTWFETTQSWKQLWYSPKDLCDNYKVCGNFGYCDSNSLPNCYCIKGFKPVNEQAWDLRDGSAGCMRKTRLSCDGRDGFTRLKRMKLPDTTATIVDREIGLKVCKERCLEDCNCTAFANADIRNGGSGCVIWTREILDMRNYAKGGQDLYVRLAAAELEDKRIKNEKIIGSSIGVSILLLLSFVIFHFWKRKQKRSITIQTPNVDQVRSQDSLINDVVVSRRGYTSKEKKSEYLELPLLELEALATATNNFSNDNKLGQGGFGIVYKGRLLDGKEIAVKRLSKMSSQGTDEFMNEVRLIAKLQHINLVRLLGCCVDKGEKMLIYEYLENLSLDSHLFDQTRSSNLNWQKRFDIINGIARGLLYLHQDSRCRIIHRDLKASNVLLDKNMTPKISDFGMARIFGREETEANTRRVVGTYGYMSPEYAMDGIFSMKSDVFSFGVLLLEIISGKRNKGFYNSNRDLNLLGFVWRHWKEGNELEIVDPINIDSLSSKFPTHEILRCIQIGLLCVQERAEDRPVMSSVMVMLGSETTAIPQPKRPGFCIGRSPLEADSSSSTQRDDECTVNQITLSVIDAR", "sequence_length": 843, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b72cf8cd9cbdf39e381a9825bfd95b10df6de4cd1b676657c1ebd54f8fa302d4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q39086.json", "taxon_id": "3702", "uniprot_accession": "Q39086", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3403-pf11883.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3403-pf11883.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3660-pf12398.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3660-pf12398.yaml" } ], "pfam_ids": [ "PF00954", "PF01453", "PF07714", "PF08276", "PF11883", "PF12398" ], "protein_name": "Receptor-like serine/threonine-protein kinase SD1-6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNVPNYHHSYFILFIIILFLAFSVYASNFSATESLTISSNKTIISPSQIFELGFFNPDSSSRWYLGIWYKIIPIRTYVWVANRDNPLSSSNGTLKISDNNLVIFDQSDRPVWSTNITGGDVRSPVAAELLDYGNFVLRDSKNNKPSGFLWQSFDFPTDTLLSDMKMGWDNKSGGFNRILRSWKTTDDPSSGDFSTKLRTSGFPEFYIYNKESITYRSGPWLGNRFSSVPGMKPVDYIDNSFTENNQQVVYSYRVNKTNIYSILSLSSTGLLQRLTWMEAAQSWKQLWYSPKDLCDNYKECGNYGYCDANTSPICNCIKGFEPMNEQAALRDDSVGCVRKTKLSCDGRDGFVRLKKMRLPDTTETSVDKGIGLKECEERCLKGCNCTAFANTDIRNGGSGCVIWSGGLFDIRNYAKGGQDLYVRVAAGDLEDKRIKSKKIIGSSIGVSILLLLSFIIFHFWKRKQKRSITIQTPIVDLVRSQDSLMNELVKASRSYTSKENKTDYLELPLMEWKALAMATNNFSTDNKLGQGGFGIVYKGMLLDGKEIAVKRLSKMSSQGTDEFMNEVRLIAKLQHINLVRLLGCCVDKGEKMLIYEYLENLSLDSHLFDQTRSSNLNWQKRFDIINGIARGLLYLHQDSRCRIIHRDLKASNVLLDKNMTPKISDFGMARIFGREETEANTRRVVGTYGYMSPEYAMDGIFSMKSDVFSFGVLLLEIISGKRNKGFYNSNRDLNLLGFVWRHWKEGKELEIVDPINIDALSSEFPTHEILRCIQIGLLCVQERAEDRPVMSSVMVMLGSETTAIPQPKRPGFCVGRSSLEVDSSSSTQRDDECTVNQVTLSVIDAR", "sequence_length": 847, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "96b5d60e7cb00ae3ab89c3d0d0495fc62d505c5805d9d17388d07e472a63b3a4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9S972.json", "taxon_id": "3702", "uniprot_accession": "Q9S972", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3403-pf11883.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3403-pf11883.yaml" } ], "pfam_ids": [ "PF00954", "PF01453", "PF07714", "PF08276", "PF11883" ], "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase At1g11280", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGIHLGEIGIVLFPWFLWLSLFLSCGYAAITISSPLTLGQTLSSPGGFYELGFFSPNNSQNQYVGIWFKKITPRVVVWVANREKPITTPVANLTISRNGSLILLDSSKNVVWSTRRPSISNKCHAKLLDTGNLVIVDDVSENLLWQSFENPGDTMLPYSSLMYNLATGEKRVLSSWKSHTDPSPGDFVVRLTPQVPAQIVTMRGSSVYKRSGPWAKTGFTGVPLMDESYTSPFSLSQDVGNGTGLFSYLQRSSELTRVIITSEGYLKTFRYNGTGWVLDFITPANLCDLYGACGPFGLCVTSNPTKCKCMKGFVPKYKEEWKRGNMTSGCMRRTELSCQANLSTKTQGKGVDVFYRLANVKPPDLYEYASFVDADQCHQGCLSNCSCSAFAYITGIGCLLWNHELIDTIRYSVGGEFLSIRLASSELAGSRRTKIIVGSISLSIFVILAFGSYKYWRYRAKQNVGPTWAFFNNSQDSWKNGLEPQEISGLTFFEMNTIRAATNNFNVSNKLGQGGFGPVYKGTLSDKKDIAVKRLSSSSGQGTEEFMNEIKLISKLQHRNLVRLLGCCIDGEEKLLIYEFLVNKSLDTFLFDLTLKLQIDWPKRFNIIQGVSRGLLYLHRDSCMRVIHRDLKVSNILLDDKMNPKISDFGLARMFQGTQHQDNTRKVVGTLGYMSPEYAWTGMFSEKSDIYAFGVLLLEIISGKKISSFCCGEEGKTLLGHAWECWLETGGVDLLDEDISSSCSPVEVEVARCVQIGLLCIQQQAVDRPNIAQVVTMMTSATDLPRPKQPLFALQIQDQESVVSVSKSVNHVTQTEIYGR", "sequence_length": 820, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5e7a2ccdc2b86ec85f2b9f0baaab2eee7b109060c4733df56819b1724b034f32", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SXB3.json", "taxon_id": "3702", "uniprot_accession": "Q9SXB3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/b-lectin-pf01453.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01453", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/b-lectin-pf01453.yaml" } ], "pfam_ids": [ "PF00954", "PF01453", "PF07714", "PF08276", "PF11883" ], "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVSVTIRRRFVLLLLACTCLLSRRLCFGEDRITFSSPIKDSESETLLCKSGIFRFGFFTPVNSTTRLRYVGIWYEKIPIQTVVWVANKDSPINDTSGVISIYQDGNLAVTDGRNRLVWSTNVSVPVAPNATWVQLMDSGNLMLQDNRNNGEILWESFKHPYDSFMPRMTLGTDGRTGGNLKLTSWTSHDDPSTGNYTAGIAPFTFPELLIWKNNVPTWRSGPWNGQVFIGLPNMDSLLFLDGFNLNSDNQGTISMSYANDSFMYHFNLDPEGIIYQKDWSTSMRTWRIGVKFPYTDCDAYGRCGRFGSCHAGENPPCKCVKGFVPKNNTEWNGGNWSNGCMRKAPLQCERQRNVSNGGGGGKADGFLKLQKMKVPISAERSEASEQVCPKVCLDNCSCTAYAYDRGIGCMLWSGDLVDMQSFLGSGIDLFIRVAHSELKTHSNLAVMIAAPVIGVMLIAAVCVLLACRKYKKRPAPAKDRSAELMFKRMEALTSDNESASNQIKLKELPLFEFQVLATSTDSFSLRNKLGQGGFGPVYKGKLPEGQEIAVKRLSRKSGQGLEELMNEVVVISKLQHRNLVKLLGCCIEGEERMLVYEYMPKKSLDAYLFDPMKQKILDWKTRFNIMEGICRGLLYLHRDSRLKIIHRDLKASNILLDENLNPKISDFGLARIFRANEDEANTRRVVGTYGYMSPEYAMEGFFSEKSDVFSLGVIFLEIISGRRNSSSHKEENNLNLLAYAWKLWNDGEAASLADPAVFDKCFEKEIEKCVHIGLLCVQEVANDRPNVSNVIWMLTTENMSLADPKQPAFIVRRGASEAESSDQSSQKVSINDVSLTAVTGR", "sequence_length": 842, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dbf4046fc5bf9471c5a695d9c5abe78122c0f43edeafd2505f0b5fc56765a44e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SXB8.json", "taxon_id": "3702", "uniprot_accession": "Q9SXB8", "uniprot_release": "2026_03" } ], "pfam_id": "PF11883", "short_name": "DUF3403", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3404-pf11884.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11884", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3404-pf11884.yaml" } ], "pfam_ids": [ "PF00512", "PF02518", "PF11884" ], "protein_name": "Sensor histidine kinase VxrA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRYSFCMLEKTNIPLIRALNLTLVSLCFAMLPNPVHADSLPERIDLFVSLFDYNSATTSYDIRSIQTDFPTRLLTPDSMLPQTSEYPLKDIQLLYKLAQSCTGKLPLSPLITEPLVFTRSLCKGSSLSPRWFARSGLIHPGGGTYAFRYAEKYPAQFANLLPYMHIQERPNAAEGTLLYHLQNMGEDAINALVSGASMFGSGSDLWLRKGDIYYLFNEETWLTNANKAGLSYSLLSADNTCFIQRGNICWDVEDHSDLLRTSMIILVIANIFLVLGWSGYRWNSKRQEMRSRMLILQILTHELRTPIASLSLTVEGFRREFEHLPESLYDEFRRLCEDSRRLRQLAEASKDYLQSDSKPLASDWVPSVEEWLQYKVEEEFSGNVTLKLNQDIAAKLNVYWLGTCVDNLLRNAVKYGVAPVTLEVITQTNLVTFKVTDQGSLTHRDWRHLRKPFVSKSGLGLGLTIVESMVGRMGGKMSLEGPPTTFILEIPCETDTASR", "sequence_length": 499, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2d5d608f75a82fdf036235a79067a57fc82f497a57db2cd97a65c5fa280b3a92", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9KM24.json", "taxon_id": "243277", "uniprot_accession": "Q9KM24", "uniprot_release": "2026_03" } ], "pfam_id": "PF11884", "short_name": "DUF3404", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11885", "short_name": "DUF3405", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/toc-tic-supercomplex-i-go0061927.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061927", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/toc-tic-supercomplex-i-go0061927.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/ribosomal-small-subunit-binding-go0043024.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0043024", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/ribosomal-small-subunit-binding-go0043024.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-import-into-chloroplast-stroma-go0045037.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0045037", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-import-into-chloroplast-stroma-go0045037.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-targeting-to-chloroplast-go0045036.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0045036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-targeting-to-chloroplast-go0045036.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/translocon-at-the-outer-envelope-membrane-of-chloroplasts-34-like-toc3-cd01853.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd01853", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/translocon-at-the-outer-envelope-membrane-of-chloroplasts-34-like-toc3-cd01853.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/aig1-type-guanine-nucleotide-binding-g-domain-ipr006703.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006703", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/aig1-type-guanine-nucleotide-binding-g-domain-ipr006703.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/translocase-of-chloroplast-159-132-membrane-anchor-domain-ipr024283.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024283", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/translocase-of-chloroplast-159-132-membrane-anchor-domain-ipr024283.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/chloroplast-protein-import-component-toc86-159-g-and-m-domains-tigr00993.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00993", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/chloroplast-protein-import-component-toc86-159-g-and-m-domains-tigr00993.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/toc159-mad-pf11886.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11886", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/toc159-mad-pf11886.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/g-aig1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51720", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/g-aig1.yaml" } ], "pfam_ids": [ "PF04548", "PF11886" ], "protein_name": "Translocase of chloroplast 159, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSKSVTPEPTNPFYASSGQSGKTYASVVAAAAAAAADKEDGGAVSSAKELDSSSEAVSGNSDKVGADDLSDSEKEKPNLVGDGKVSDEVDGSLKEDSTTPEATPKPEVVSGETIGVDDVSSLSPKPEAVSDGVGVVEENKKVKEDVEDIKDDGESKIENGSVDVDVKQASTDGESESKVKDVEEEDVGTKKDDEGESELGGKVDVDDKSDNVIEEEGVELTDKGDVIVNSSPVESVHVDVAKPGVVVVGDAEGSEELKINADAETLEVANKFDQIGDDDSGEFEPVSDKAIEEVEEKFTSESDSIADSSKLESVDTSAVEPEVVAAESGSEPKDVEKANGLEKGMTYAEVIKAASAVADNGTKEEESVLGGIVDDAEEGVKLNNKGDFVVDSSAIEAVNVDVAKPGVVVVGDVEVSEVLETDGNIPDVHNKFDPIGQGEGGEVELESDKATEEGGGKLVSEGDSMVDSSVVDSVDADINVAEPGVVVVGAAKEAVIKEDDKDDEVDKTISNIEEPDDLTAAYDGNFELAVKEISEAAKVEPDEPKVGVEVEELPVSESLKVGSVDAEEDSIPAAESQFEVRKVVEGDSAEEDENKLPVEDIVSSREFSFGGKEVDQEPSGEGVTRVDGSESEEETEEMIFGSSEAAKQFLAELEKASSGIEAHSDEANISNNMSDRIDGQIVTDSDEDVDTEDEGEEKMFDTAALAALLKAATGGGSSEGGNFTITSQDGTKLFSMDRPAGLSSSLRPLKPAAAPRANRSNIFSNSNVTMADETEINLSEEEKQKLEKLQSLRVKFLRLLQRLGHSAEDSIAAQVLYRLALLAGRQAGQLFSLDAAKKKAVESEAEGNEELIFSLNILVLGKAGVGKSATINSILGNQIASIDAFGLSTTSVREISGTVNGVKITFIDTPGLKSAAMDQSTNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDLNNLPLLRTITASLGTSIWKNAIVTLTHAASAPPDGPSGTPLSYDVFVAQCSHIVQQSIGQAVGDLRLMNPSLMNPVSLVENHPLCRKNREGVKVLPNGQTWRSQLLLLCYSLKVLSETNSLLRPQEPLDHRKVFGFRVRSPPLPYLLSWLLQSRAHPKLPGDQGGDSVDSDIEIDDVSDSEQEDGEDDEYDQLPPFKPLRKTQLAKLSNEQRKAYFEEYDYRVKLLQKKQWREELKRMKEMKKNGKKLGESEFGYPGEEDDPENGAPAAVPVPLPDMVLPPSFDSDNSAYRYRYLEPTSQLLTRPVLDTHGWDHDCGYDGVNAEHSLALASRFPATATVQVTKDKKEFNIHLDSSVSAKHGENGSTMAGFDIQNVGKQLAYVVRGETKFKNLRKNKTTVGGSVTFLGENIATGVKLEDQIALGKRLVLVGSTGTMRSQGDSAYGANLEVRLREADFPIGQDQSSFGLSLVKWRGDLALGANLQSQVSVGRNSKIALRAGLNNKMSGQITVRTSSSDQLQIALTAILPIAMSIYKSIRPEATNDKYSMY", "sequence_length": 1503, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "619f1d66ea9c3a662d9203532ca105d74f75cc7d81e1417743cb6c854300029a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O81283.json", "taxon_id": "3702", "uniprot_accession": "O81283", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/translocon-at-the-outer-envelope-membrane-of-chloroplasts-34-like-toc3-cd01853.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd01853", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/translocon-at-the-outer-envelope-membrane-of-chloroplasts-34-like-toc3-cd01853.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/translocase-of-chloroplast-159-132-membrane-anchor-domain-ipr024283.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024283", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/translocase-of-chloroplast-159-132-membrane-anchor-domain-ipr024283.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/toc159-mad-pf11886.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11886", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/toc159-mad-pf11886.yaml" } ], "pfam_ids": [ "PF04548", "PF11886" ], "protein_name": "Translocase of chloroplast 90, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKGFKDWVFALSNSMASSRPLLGSDPFFRDPHQEQDNHSQAPAAPQPVTLSEPPCSTSSDLEILPPLSQQQVPLESLYQSSIDLNGKKHNPLAKIGGLQVQFLRLVQRFGQSQNNILVSKVLYRVHLAMLIRAEESELKNVKLRQDRAKALAREQESSGIPELDFSLRILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFHPLSSSSTRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIWLNTILVMTHSAATTEGRNGQSVNYESYVGQRMDVVQHYIHQAVSDTKLENPVLLVENHPSCKKNLAGEYVLPNGVVWKPQFMFLCVCTKVLGDVQSLLRFRDSIGLGQPSSTRTASLPHLLSVFLRRRLSSGADETEKEIDKLLNLDLEEEDEYDQLPTIRILGKSRFEKLSKSQKKEYLDELDYRETLYLKKQLKEECRRRRDEKLVEEENLEDTEQRDQAAVPLPDMAGPDSFDSDFPAHRYRCVSAGDQWLVRPVYDPQGWDRDVGFDGINIETAAKINRNLFASATGQVSRDKQRFTIQSETNAAYTRNFREQTFSVAVDLQSSGEDLVYSFQGGTKLQTFKHNTTDVGVGLTSFGGKYYVGGKLEDTLLVGKRVKLTANAGQMRGSGQTANGGSFEACIRGRDYPVRNEQIGLTMTALSFKRELVLNYGLQTQFRPARGTNIDVNINMNNRKMGKINVKLNSSEHWEIALISALTMFKALVRRSKTEMTEENEEEKIVNFLVS", "sequence_length": 793, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6de772c7d179a165bf1997a171c11d07a7401821745c93fd3154427f9735ef51", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6S5G3.json", "taxon_id": "3702", "uniprot_accession": "Q6S5G3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/translocon-at-the-outer-envelope-membrane-of-chloroplasts-34-like-toc3-cd01853.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd01853", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/translocon-at-the-outer-envelope-membrane-of-chloroplasts-34-like-toc3-cd01853.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/translocase-of-chloroplast-159-132-membrane-anchor-domain-ipr024283.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024283", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/translocase-of-chloroplast-159-132-membrane-anchor-domain-ipr024283.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/chloroplast-protein-import-component-toc86-159-g-and-m-domains-tigr00993.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00993", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/chloroplast-protein-import-component-toc86-159-g-and-m-domains-tigr00993.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/toc159-mad-pf11886.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11886", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/toc159-mad-pf11886.yaml" } ], "pfam_ids": [ "PF04548", "PF11886" ], "protein_name": "Translocase of chloroplast 120, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDGAEIVTRLYGDEKKLAEDGRISELVGSDEVKDNEEEVFEEAIGSQEGLKPESLKTDVLQEDFPLASNDEVCDLEETSRNERGVENLKVNYSEIGESHGEVNEQCITTKEADSDLVTLKMNDYDHGEVADADISYGKMASSLDVVENSEKATSNLATEDVNLENGNTHSSSENGVVSPDENKELVAEVISVSACSVETGSNGIDDEKWEEEIDVSAGMVTEQRNGKTGAEFNSVKIVSGDKSLNDSIEVAAGTLSPLEKSSSEEKGETESQNSNGGHDIQSNKEIVKQQDSSVNIGPEIKESQHMERESEVLSSVSPTESRSDTAALPPARPAGLGRAAPLLEPAPRVTQQPRVNGNVSHNQPQQAEDSTTAETDEHDETREKLQFIRVKFLRLSHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGSRVGAFSFDRASAMAEQLEAAAQDPLDFSCTIMVLGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGFVQGIKVRVIDTPGLLPSWSDQHKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWFNAIVGLTHAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALLKLQDNIPGGQFATRSKAPPLPLLLSSLLQSRPQAKLPEQQYDDEDDEDDLDESSDSEEESEYDELPPFKRLTKAEMTKLSKSQKKEYLDEMEYREKLFMKRQMKEERKRRKLLKKFAAEIKDMPNGYSENVEEERSEPASVPVPMPDLSLPASFDSDNPTHRYRYLDTSNQWLVRPVLETHGWDHDIGYEGVNAERLFVVKDKIPVSFSGQVTKDKKDAHVQLELASSVKHGEGRSTSLGFDMQNAGKELAYTIRSETRFNKFRKNKAAAGLSVTLLGDSVSAGLKVEDKLIANKRFRMVMSGGAMTSRGDVAYGGTLEAQFRDKDYPLGRFLSTLGLSVMDWHGDLAIGGNIQSQVPIGRSSNLIARANLNNRGAGQVSIRVNSSEQLQLAVVALVPLFKKLLTYYSPEQMQYGH", "sequence_length": 1089, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3dfcb7e6a71ab6aba475871111d088cd2cd21c28ceeef06efdde1906c2123573", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LUS2.json", "taxon_id": "3702", "uniprot_accession": "Q9LUS2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/translocon-at-the-outer-envelope-membrane-of-chloroplasts-34-like-toc3-cd01853.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd01853", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/translocon-at-the-outer-envelope-membrane-of-chloroplasts-34-like-toc3-cd01853.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/translocase-of-chloroplast-159-132-membrane-anchor-domain-ipr024283.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024283", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/translocase-of-chloroplast-159-132-membrane-anchor-domain-ipr024283.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/chloroplast-protein-import-component-toc86-159-g-and-m-domains-tigr00993.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00993", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/chloroplast-protein-import-component-toc86-159-g-and-m-domains-tigr00993.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/toc159-mad-pf11886.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11886", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/toc159-mad-pf11886.yaml" } ], "pfam_ids": [ "PF04548", "PF11886" ], "protein_name": "Translocase of chloroplast 132, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDGTEFVVRSDREDKKLAEDRISDEQVVKNELVRSDEVRDDNEDEVFEEAIGSENDEQEEEEDPKRELFESDDLPLVETLKSSMVEHEVEDFEEAVGDLDETSSNEGGVKDFTAVGESHGAGEAEFDVLATKMNGDKGEGGGGGSYDKVESSLDVVDTTENATSTNTNGSNLAAEHVGIENGKTHSFLGNGIASPKNKEVVAEVIPKDDGIEEPWNDGIEVDNWEERVDGIQTEQEVEEGEGTTENQFEKRTEEEVVEGEGTSKNLFEKQTEQDVVEGEGTSKDLFENGSVCMDSESEAERNGETGAAYTSNIVTNASGDNEVSSAVTSSPLEESSSGEKGETEGDSTCLKPEQHLASSPHSYPESTEVHSNSGSPGVTSREHKPVQSANGGHDVQSPQPNKELEKQQSSRVHVDPEITENSHVETEPEVVSSVSPTESRSNPAALPPARPAGLGRASPLLEPASRAPQQSRVNGNGSHNQFQQAEDSTTTEADEHDETREKLQLIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGSRVGAFSFDRASAMAEQLEAAGQDPLDFSCTIMVLGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLLPSWSDQAKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWFNAIVGLTHAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALLKLQDNIPGRPFAARSKAPPLPFLLSSLLQSRPQPKLPEQQYGDEEDEDDLEESSDSDEESEYDQLPPFKSLTKAQMATLSKSQKKQYLDEMEYREKLLMKKQMKEERKRRKMFKKFAAEIKDLPDGYSENVEEESGGPASVPVPMPDLSLPASFDSDNPTHRYRYLDSSNQWLVRPVLETHGWDHDIGYEGVNAERLFVVKEKIPISVSGQVTKDKKDANVQLEMASSVKHGEGKSTSLGFDMQTVGKELAYTLRSETRFNNFRRNKAAAGLSVTHLGDSVSAGLKVEDKFIASKWFRIVMSGGAMTSRGDFAYGGTLEAQLRDKDYPLGRFLTTLGLSVMDWHGDLAIGGNIQSQVPIGRSSNLIARANLNNRGAGQVSVRVNSSEQLQLAMVAIVPLFKKLLSYYYPQTQYGQ", "sequence_length": 1206, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2bc479f2896c4ddcb9f6323a168ddedead21e79f2b87f0b7ccc4867cd1dfe562", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SLF3.json", "taxon_id": "3702", "uniprot_accession": "Q9SLF3", "uniprot_release": "2026_03" } ], "pfam_id": "PF11886", "short_name": "TOC159_MAD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11887", "short_name": "Mce4_CUP1", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11888", "short_name": "DUF3408", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bovine viral diarrhea virus (isolate NADL)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/capsid-pestivir-pf11889.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11889", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/capsid-pestivir-pf11889.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/jiv90-pf14901.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14901", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/jiv90-pf14901.yaml" } ], "pfam_ids": [ "PF00271", "PF00998", "PF05550", "PF05578", "PF07652", "PF11889", "PF12387", "PF14901", "PF16329", "PF20907" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELITNELLYKTYKQKPVGVEEPVYDQAGDPLFGERGAVHPQSTLKLPHKRGERDVPTNLASLPKRGDCRSGNSRGPVSGIYLKPGPLFYQDYKGPVYHRAPLELFEEGSMCETTKRIGRVTGSDGKLYHIYVCIDGCIIIKSATRSYQRVFRWVHNRLDCPLWVTTCSDTKEEGATKKKTQKPDRLERGKMKIVPKESEKDSKTKPPDATIVVEGVKYQVRKKGKTKSKNTQDGLYHNKNKPQESRKKLEKALLAWAIIAIVLFQVTMGENITQWNLQDNGTEGIQRAMFQRGVNRSLHGIWPEKICTGVPSHLATDIELKTIHGMMDASEKTNYTCCRLQRHEWNKHGWCNWYNIEPWILVMNRTQANLTEGQPPRECAVTCRYDRASDLNVVTQARDSPTPLTGCKKGKNFSFAGILMRGPCNFEIAASDVLFKEHERISMFQDTTLYLVDGLTNSLEGARQGTAKLTTWLGKQLGILGKKLENKSKTWFGAYAASPYCDVDRKIGYIWYTKNCTPACLPKNTKIVGPGKFGTNAEDGKILHEMGGHLSEVLLLSLVVLSDFAPETASVMYLILHFSIPQSHVDVMDCDKTQLNLTVELTTAEVIPGSVWNLGKYVCIRPNWWPYETTVVLAFEEVSQVVKLVLRALRDLTRIWNAATTTAFLVCLVKIVRGQMVQGILWLLLITGVQGHLDCKPEFSYAIAKDERIGQLGAEGLTTTWKEYSPGMKLEDTMVIAWCEDGKLMYLQRCTRETRYLAILHTRALPTSVVFKKLFDGRKQEDVVEMNDNFEFGLCPCDAKPIVRGKFNTTLLNGPAFQMVCPIGWTGTVSCTSFNMDTLATTVVRTYRRSKPFPHRQGCITQKNLGEDLHNCILGGNWTCVPGDQLLYKGGSIESCKWCGYQFKESEGLPHYPIGKCKLENETGYRLVDSTSCNREGVAIVPQGTLKCKIGKTTVQVIAMDTKLGPMPCRPYEIISSEGPVEKTACTFNYTKTLKNKYFEPRDSYFQQYMLKGEYQYWFDLEVTDHHRDYFAESILVVVVALLGGRYVLWLLVTYMVLSEQKALGIQYGSGEVVMMGNLLTHNNIEVVTYFLLLYLLLREESVKKWVLLLYHILVVHPIKSVIVILLMIGDVVKADSGGQEYLGKIDLCFTTVVLIVIGLIIARRDPTIVPLVTIMAALRVTELTHQPGVDIAVAVMTITLLMVSYVTDYFRYKKWLQCILSLVSAVFLIRSLIYLGRIEMPEVTIPNWRPLTLILLYLISTTIVTRWKVDVAGLLLQCVPILLLVTTLWADFLTLILILPTYELVKLYYLKTVRTDTERSWLGGIDYTRVDSIYDVDESGEGVYLFPSRQKAQGNFSILLPLIKATLISCVSSKWQLIYMSYLTLDFMYYMHRKVIEEISGGTNIISRLVAALIELNWSMEEEESKGLKKFYLLSGRLRNLIIKHKVRNETVASWYGEEEVYGMPKIMTIIKASTLSKSRHCIICTVCEGREWKGGTCPKCGRHGKPITCGMSLADFEERHYKRIFIREGNFEGMCSRCQGKHRRFEMDREPKSARYCAECNRLHPAEEGDFWAESSMLGLKITYFALMDGKVYDITEWAGCQRVGISPDTHRVPCHISFGSRMPFRQEYNGFVQYTARGQLFLRNLPVLATKVKMLMVGNLGEEIGNLEHLGWILRGPAVCKKITEHEKCHINILDKLTAFFGIMPRGTTPRAPVRFPTSLLKVRRGLETAWAYTHQGGISSVDHVTAGKDLLVCDSMGRTRVVCQSNNRLTDETEYGVKTDSGCPDGARCYVLNPEAVNISGSKGAVVHLQKTGGEFTCVTASGTPAFFDLKNLKGWSGLPIFEASSGRVVGRVKVGKNEESKPTKIMSGIQTVSKNRADLTEMVKKITSMNRGDFKQITLATGAGKTTELPKAVIEEIGRHKRVLVLIPLRAAAESVYQYMRLKHPSISFNLRIGDMKEGDMATGITYASYGYFCQMPQPKLRAAMVEYSYIFLDEYHCATPEQLAIIGKIHRFSESIRVVAMTATPAGSVTTTGQKHPIEEFIAPEVMKGEDLGSQFLDIAGLKIPVDEMKGNMLVFVPTRNMAVEVAKKLKAKGYNSGYYYSGEDPANLRVVTSQSPYVIVATNAIESGVTLPDLDTVIDTGLKCEKRVRVSSKIPFIVTGLKRMAVTVGEQAQRRGRVGRVKPGRYYRSQETATGSKDYHYDLLQAQRYGIEDGINVTKSFREMNYDWSLYEEDSLLITQLEILNNLLISEDLPAAVKNIMARTDHPEPIQLAYNSYEVQVPVLFPKIRNGEVTDTYENYSFLNARKLGEDVPVYIYATEDEDLAVDLLGLDWPDPGNQQVVETGKALKQVTGLSSAENALLVALFGYVGYQALSKRHVPMITDIYTIEDQRLEDTTHLQYAPNAIKTDGTETELKELASGDVEKIMGAISDYAAGGLEFVKSQAEKIKTAPLFKENAEAAKGYVQKFIDSLIENKEEIIRYGLWGTHTALYKSIAARLGHETAFATLVLKWLAFGGESVSDHVKQAAVDLVVYYVMNKPSFPGDSETQQEGRRFVASLFISALATYTYKTWNYHNLSKVVEPALAYLPYATSALKMFTPTRLESVVILSTTIYKTYLSIRKGKSDGLLGTGISAAMEILSQNPVSVGISVMLGVGAIAAHNAIESSEQKRTLLMKVFVKNFLDQAATDELVKENPEKIIMALFEAVQTIGNPLRLIYHLYGVYYKGWEAKELSERTAGRNLFTLIMFEAFELLGMDSQGKIRNLSGNYILDLIYGLHKQINRGLKKMVLGWAPAPFSCDWTPSDERIRLPTDNYLRVETRCPCGYEMKAFKNVGGKLTKVEESGPFLCRNRPGRGPVNYRVTKYYDDNLREIKPVAKLEGQVEHYYKGVTAKIDYSKGKMLLATDKWEVEHGVITRLAKRYTGVGFNGAYLGDEPNHRALVERDCATITKNTVQFLKMKKGCAFTYDLTISNLTRLIELVHRNNLEEKEIPTATVTTWLAYTFVNEDVGTIKPVLGERVIPDPVVDINLQPEVQVDTSEVGITIIGRETLMTTGVTPVLEKVEPDASDNQNSVKIGLDEGNYPGPGIQTHTLTEEIHNRDARPFIMILGSRNSISNRAKTARNINLYTGNDPREIRDLMAAGRMLVVALRDVDPELSEMVDFKGTFLDREALEALSLGQPKPKQVTKEAVRNLIEQKKDVEIPNWFASDDPVFLEVALKNDKYYLVGDVGELKDQAKALGATDQTRIIKEVGSRTYAMKLSSWFLKASNKQMSLTPLFEELLLRCPPATKSNKGHMASAYQLAQGNWEPLGCGVHLGTIPARRVKIHPYEAYLKLKDFIEEEEKKPRVKDTVIREHNKWILKKIRFQGNLNTKKMLNPGKLSEQLDREGRKRNIYNHQIGTIMSSAGIRLEKLPIVRAQTDTKTFHEAIRDKIDKSENRQNPELHNKLLEIFHTIAQPTLKHTYGEVTWEQLEAGVNRKGAAGFLEKKNIGEVLDSEKHLVEQLVRDLKAGRKIKYYETAIPKNEKRDVSDDWQAGDLVVEKRPRVIQYPEAKTRLAITKVMYNWVKQQPVVIPGYEGKTPLFNIFDKVRKEWDSFNEPVAVSFDTKAWDTQVTSKDLQLIGEIQKYYYKKEWHKFIDTITDHMTEVPVITADGEVYIRNGQRGSGQPDTSAGNSMLNVLTMMYGFCESTGVPYKSFNRVARIHVCGDDGFLITEKGLGLKFANKGMQILHEAGKPQKITEGEKMKVAYRFEDIEFCSHTPVPVRWSDNTSSHMAGRDTAVILSKMATRLDSSGERGTTAYEKAVAFSFLLMYSWNPLVRRICLLVLSQQPETDPSKHATYYYKGDPIGAYKDVIGRNLSELKRTGFEKLANLNLSLSTLGVWTKHTSKRIIQDCVAIGKEEGNWLVKPDRLISSKTGHLYIPDKGFTLQGKHYEQLQLRTETNPVMGVGTERYKLGPIVNLLLRRLKILLMTAVGVSS", "sequence_length": 3988, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dff46b86dbf190dc6ffc941a2ce6694b322f2912f96702262abb05541fbe290c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P19711.json", "taxon_id": "11100", "uniprot_accession": "P19711", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Classical swine fever virus (strain Alfort/Tuebingen)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/capsid-pestivir-pf11889.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11889", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/capsid-pestivir-pf11889.yaml" } ], "pfam_ids": [ "PF00271", "PF00998", "PF05550", "PF05578", "PF07652", "PF11889", "PF12387", "PF16329", "PF20907" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELNHFELLYKTSKQKPVGVEEPVYDTAGRPLFGNPSEVHPQSTLKLPHDRGRGDIRTTLRDLPRKGDCRSGNHLGPVSGIYIKPGPVYYQDYTGPVYHRAPLEFFDEAQFCEVTKRIGRVTGSDGKLYHIYVCVDGCILLKLAKRGTPRTLKWIRNFTNCPLWVTSCSDDGASGSKDKKPDRMNKGKLKIAPREHEKDSKTKPPDATIVVEGVKYQIKKKGKVKGKNTQDGLYHNKNKPPESRKKLEKALLAWAVITILLYQPVAAENITQWNLSDNGTNGIQRAMYLRGVNRSLHGIWPEKICKGVPTHLATDTELKEIRGMMDASERTNYTCCRLQRHEWNKHGWCNWYNIDPWIQLMNRTQTNLTEGPPDKECAVTCRYDKNTDVNVVTQARNRPTTLTGCKKGKNFSFAGTVIEGPCNFNVSVEDILYGDHECGSLLQDTALYLLDGMTNTIENARQGAARVTSWLGRQLSTAGKKLERRSKTWFGAYALSPYCNVTRKIGYIWYTNNCTPACLPKNTKIIGPGKFDTNAEDGKILHEMGGHLSEFLLLSLVILSDFAPETASTLYLILHYAIPQSHEEPEGCDTNQLNLTVKLRTEDVVPSSVWNIGKYVCVRPDWWPYETKVALLFEEAGQVIKLVLRALRDLTRVWNSASTTAFLICLIKVLRGQVVQGIIWLLLVTGAQGRLACKEDYRYAISSTNEIGLLGAEGLTTTWKEYSHGLQLDDGTVKAVCTAGSFKVTALNVVSRRYLASLHKRALPTSVTFELLFDGTNPAIEEMDDDFGFGLCPFDTSPVIKGKYNTTLLNGSAFYLVCPIGWTGVVECTAVSPTTLRTEVVKTFRRDKPFPHRVDCVTTIVEKEDLFHCKLGGNWTCVKGDPVTYKGGQVKQCRWCGFEFKEPYGLPHYPIGKCILTNETGYRVVDSTDCNRDGVVISTEGEHECLIGNTTVKVHALDERLGPMPCRPKEIVSSEGPVRKTSCTFNYTKTLRNKYYEPRDSYFQQYMLKGEYQYWFNLDVTDHHTDYFAEFVVLVVVALLGGRYVLWLIVTYIILTEQLAAGLQLGQGEVVLIGNLITHTDNEVVVYFLLLYLVIRDEPIKKWILLLFHAMTNNPVKTITVALLMISGVAKGGKIDGGWQRQPVTSFDIQLALAVVVVVVMLLAKRDPTTFPLVITVATLRTAKITNGFSTDLVIATVSAALLTWTYISDYYKYKTWLQYLVSTVTGIFLIRVLKGIGELDLHAPTLPSHRPLFYILVYLISTAVVTRWNLDVAGLLLQCVPTLLMVFTMWADILTLILILPTYELTKLYYLKEVKIGAERGWLWKTNYKRVNDIYEVDQTSEGVYLFPSKQRTSAITSTMLPLIKAILISCISNKWQLIYLLYLIFEVSYYLHKKVIDEIAGGTNFVSRLVAALIEVNWAFDNEEVKGLKKFFLLSSRVKELIIKHKVRNEVVVRWFGDEEIYGMPKLIGLVKAATLSRNKHCMLCTVCEDRDWRGETCPKCGRFGPPVVCGMTLADFEEKHYKRIFIREDQSGGPLREEHAGYLQYKARGQLFLRNLPVLATKVKMLLVGNLGTEIGDLEHLGWVLRGPAVCKKVTEHERCTTSIMDKLTAFFGVMPRGTTPRAPVRFPTSLLKIRRGLETGWAYTHQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSGCPEGARCYVFNPEAVNISGTKGAMVHLQKTGGEFTCVTASGTPAFFDLKNLKGWSGLPIFEASSGRVVGRVKVGKNEDSKPTKLMSGIQTVSKSATDLTEMVKKITTMNRGEFRQITLATGAGKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMSQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTATPAGTVTTTGQKHPIEEFIAPEVMKGEDLGSEYLDIAGLKIPVEEMKNNMLVFVPTRNMAVEAAKKLKAKGYNSGYYYSGEDPSNLRVVTSQSPYVVVATNAIESGVTLPDLDVVVDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVGRVKPGRYYRSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKNIMARTDHPEPIQLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVGLSTAENALLVALFGYVGYQALSKRHIPVVTDIYSVEDHRLEDTTHLQYAPNAIKTEGKETELKELAQGDVQRCVEAVTNYAREGIQFMKSQALKVRETPTYKETMNTVADYVKKFIEALTDSKEDIIKYGLWGAHTALYKSIGARLGHETAFATLVVKWLAFGGESISDHIKQAATDLVVYYIINRPQFPGDTETQQEGRKFVASLLVSALATYTYKSWNYNNLSKIVEPALATLPYAAKALKLFAPTRLESVVILSTAIYKTYLSIRRGKSDGLLGTGVSAAMEIMSQNPVSVGIAVMLGVGAVAAHNAIEASEQKRTLLMKVFVKNFLDQAATDELVKESPEKIIMALFEAVQTVGNPLRLVYHLYGVFYKGWEAKELAQRTAGRNLFTLIMFEAVELLGVDSEGKIRQLSSNYILELLYKFRDNIKSSVREIAISWAPAPFSCDWTPTDDRIGLPHENYLRVETKCPCGYRMKAVKNCAGELRLLEEGGSFLCRNKFGRGSQNYRVTKYYDDNLSEIKPVIRMEGHVELYYKGATIKLDFNNSKTVLATDKWEVDHSTLVRALKRYTGAGYRGAYLGEKPNHKHLIQRDCATITKDKVCFIKMKRGCAFTYDLSLHNLTRLIELVHKNNLEDREIPAVTVTTWLAYTFVNEDIGTIKPTFGEKVTPEKQEEVVLQPAVVVDTTDVAVTVVGETSTMTTGETPTTFTSLGSDSKVRQVLKLGVDDGQYPGPNQQRASLLEAIQGVDERPSVLILGSDKATSNRVKTAKNVKIYRSRDPLELREMMKRGKILVVALSRVDTALLKFVDYKGTFLTRETLEALSLGKPKKRDITKAEAQWLLRLEDQIEELPDWFAAKEPIFLEANIKRDKYHLVGDIATIKEKAKQLGATDSTKISKEVGAKVYSMKLSNWVIQEENKQGSLAPLFEELLQQCPPGGQNKTTHMVSAYQLAQGNWVPVSCHVFMGTIPARRTKTHPYEAYVKLRELVDEHKMKALCGGSGLSKHNEWVIGKVKYQGNLRTKHMLNPGKVAEQLHREGYRHNVYNKTIGSVMTATGIRLEKLPVVRAQTDTTNFHQAIRDKIDKEENLQTPGLHKKLMEVFNALKRPELEASYDAVDWEELERGINRKGAAGFFERKNIGEVLDSEKNKVEEVIDSLKKGRNIRYYETAIPKNEKRDVNDDWTAGDFVDEKKPRVIQYPEAKTRLAITKVMYKWVKQKPVVIPGYEGKTPLFQIFDKVKKEWDQFQNPVAVSFDTKAWDTQVTTRDLELIRDIQKFYFKKKWHKFIDTLTKHMSEVPVISADGEVYIRKGQRGSGQPDTSAGNSMLNVLTMVYAFCEATGVPYKSFDRVAKIHVCGDDGFLITERALGEKFASKGVQILYEAGKPQKITEGDKMKVAYQFDDIEFCSHTPVQVRWSDNTSSYMPGRNTTTILAKMATRLDSSGERGTIAYEKAVAFSFLLMYSWNPLIRRICLLVLSTELQVRPGKSTTYYYEGDPISAYKEVIGHNLFDLKRTSFEKLAKLNLSMSTLGVWTRHTSKRLLQDCVNVGTKEGNWLVNADRLVSSKTGNRYIPGEGHTLQGKHYEELILARKPIGNFEGTDRYNLGPIVNVVLRRLKIMMMALIGRGV", "sequence_length": 3898, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8eb9471b7acedbb6240f233dea22780305e5d0cb88ff2788bbceb8b3b290e304", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P19712.json", "taxon_id": "358805", "uniprot_accession": "P19712", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bovine viral diarrhea virus (strain SD-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/capsid-pestivir-pf11889.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11889", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/capsid-pestivir-pf11889.yaml" } ], "pfam_ids": [ "PF00271", "PF00998", "PF05550", "PF05578", "PF07652", "PF11889", "PF12387", "PF16329", "PF20907" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELITNELLYKTYKQKPVGVEEPVYDQAGNPLFGERGAIHPQSTLKLPHKRGERNVPTSLASLPKRGDCRSGNSKGPVSGIYLKPGPLFYQDYKGPVYHRAPLELFEEGSMCETTKRIGRVTGSDGKLYHIYICIDGCITVKSATRSHQRVLRWVHNRLDCPLWVTSCSDTKEEGATKKKQQKPDRLEKGRMKIVPKESEKDSKTKPPDATIVVDGVKYQVKKKGKVKSKNTQDGLYHNKNKPPESRKKLEKALLAWAILAVVLIEVTMGENITQWNLQDNGTEGIQRAMFQRGVNRSLHGIWPEKICTGVPSHLATDVELKTIHGMMDASEKTNYTCCRLQRHEWNKHGWCNWYNIEPWILIMNRTQANLTEGQPPRECAVTCRYDRDSDLNVVTQARDSPTPLTGCKKGKNFSFAGVLTRGPCNFEIAASDVLFKEHECTGVFQDTAHYLVDGVTNSLESARQGTAKLTTWLGKQLGILGKKLENKSKTWFGAYAASPYCDVDRKIGYIWFTKNCTPACLPKNTKIIGPGKFDTNAEDGKILHEMGGHLSEVLLLSLVVLSDFAPETASAMYLILHFSIPQSHVDITDCDKTQLNLTIELTTADVIPGSVWNLGKYVCIRPDWWPYETAAVLAFEEVGQVVKIVLRALRDLTRIWNAATTTAFLVCLIKMVRGQVVQGILWLLLITGVQGHLDCKPEYSYAIAKNDRVGPLGAEGLTTVWKDYSHEMKLEDTMVIAWCKGGKFTYLSRCTRETRYLAILHSRALPTSVVFKKLFEGQKQEDTVEMDDDFEFGLCPCDAKPIVRGKFNTTLLNGPAFQMVCPIGWTGTVSCMLANRDTLDTAVVRTYRRSVPFPYRQGCITQKTLGEDLYDCALGGNWTCVTGDQSRYTGGLIESCKWCGYKFQKSEGLPHYPIGKCRLNNETGYRLVDDTSCDREGVAIVPHGLVKCKIGDTTVQVIATDTKLGPMPCKPHEIISSEGPIEKTACTFNYTRTLKNKYFEPRDSYFQQYMLKGDYQYWFDLEVTDHHRDYFAESILVVVVALLGGRYVLWLLVTYMVLSEQKASGAQYGAGEVVMMGNLLTHDNVEVVTYFFLLYLLLREESVKKWVLLLYHILVAHPLKSVIVILLMIGDVVKADPGGQGYLGQIDVCFTMVVIIIIGLIIARRDPTIVPLITIVASLRVTGLTYSPGVDAAMAVITITLLMVSYVTDYFRYKRWLQCILSLVSGVFLIRCLIHLGRIETPEVTIPNWRPLTLILFYLISTTVVTMWKIDLAGLLLQGVPILLLITTLWADFLTLILILPTYELVKLYYLKTIKTDIEKSWLGGLDYKRVDSIYDVDESGEGVYLFPSRQKAQKNFSMLLPLVRATLISCVSSKWQLIYMAYLSVDFMYYMHRKVIEEISGGTNMISRIVAALIELNWSMEEEESKGLKKFYLLSGRLRNLIIKHKVRNETVAGWYGEEEVYGMPKIMTIIKASTLNKNKHCIICTVCEGRKWKGGTCPKCGRHGKPITCGMSLADFEERHYKRIFIREGNFEGPFRQEYNGFIQYTARGQLFLRNLPILATKVKMLMVGNLGEEVGDLEHLGWILRGPAVCKKITEHERCHINILDKLTAFFGIMPRGTTPRAPVRFPTSLLKVRRGLETGWAYTHQGGISSVDHVTAGKDLLVCDSMGRTRVVCQSNNKLTDETEYGVKTDSGCPDGARCYVLNPEAVNISGSKGAVVHLQKTGGEFTCVTASGTPAFFDLKNLKGWSGLPIFEASSGRVVGRVKVGKNEESKPTKIMSGIQTVSKNTADLTEMVKKITSMNRGDFKQITLATGAGKTTELPKAVIEEIGRHKRVLVLIPLRAAAESVYQYMRLKHPSISFNLRIGDMKEGDMATGITYASYGYFCQMPQPKLRAAMVEYSYIFLDEYHCATPEQLAIIGKIHRFSESIRVVAMTATPAGSVTTTGQKHPIEEFIAPEVMEGEDLGSQFLDIAGLKIPVDEMKGNMLVFVPTRNMAVEVAKKLKAKGYNSGYYYSGEDPANLRVVTSQSPYVIVATNAIESGVTLPDLDTVVDTGLKCEKRVRVSSKIPFIVTGLKRMAVTVGEQAQRRGRVGRVKPGRYYRSQETATGSKDYHYDLLQAQRYGIEDGINVTKSFREMNYDWSLYEEDSLLITQLEILNNLLISEDLPAAVKNIMARTDHPEPIQLAYNSYEVQVPVLFPKIRNGEVTDTYENYSFLNARKLGEDVPVYIYATEDEDLAVDLLGLDWPDPGNQQVVETGKALKQVAGLSSAENALLVALFGYVGYQALSKRHVPMITDIYTIEDQRLEDTTHLQYAPNAIKTEGTETELKELASGDVEKIMGAISDYAAGGLDFVKSQAEKIKTAPLFKENVEAARGYVQKLIDSLIEDKDVIIRYGLWGTHTALYKSIAARLGHETAFATLVLKWLAFGGETVSDHIRQAAVDLVVYYVMNKPSFPGDTETQQEGRRFVASLFISALATYTYKTWNYNNLSKVVEPALAYLPYATSALKMFTPTRLESVVILSTTIYKTYLSIRKGKSDGLLGTGISAAMEILSQNPVSVGISVMLGVGAIAAHNAIESSEQKRTLLMKVFVKNFLDQAATDELVKENPEKIIMALFEAVQTIGNPLRLIYHLYGVYYKGWEAKELSERTAGRNLFTLIMFEAFELLGMDSEGKIRNLSGNYILDLIHGLHKQINRGLKKIVLGWAPAPFSCDWTPSDERIRLPTDSYLRVETKCPCGYEMKALKNVSGKLTKVEESGPFLCRNRPGRGPVNYRVTKYYDDNLREIRPVAKLEGQVEHYYKGVTARIDYSKGKTLLATDKWEVEHGTLTRLTKRYTGVGFRGAYLGDEPNHRDLVERDCATITKNTVQFLKMKKGCAFTYDLTISNLTRLIELVHRNNLEEKEIPTATVTTWLAYTFVNEDVGTIKPVLGERVIPDPVVDINLQPEVQVDTSEVGITIIGKEAVMTTGVTPVMEKVEPDTDNNQSSVKIGLDEGNYPGPGVQTHTLVEEIHNKDARPFIMVLGSKSSMSNRAKTARNINLYTGNDPREIRDLMAEGRILVVALRDIDPDLSELVDFKGTFLDREALEALSLGQPKPKQVTKAAIRDLLKEERQVEIPDWFTSDDPVFLDIAMKKDKYHLIGDVVEVKDQAKALGATDQTRIVKEVGSRTYTMKLSSWFLQASSKQMSLTPLFEELLLRCPPATKSNKGHMASAYQLAQGNWEPLGCGVHLGTVPARRVKMHPYEAYLKLKDLVEEEEKKPRIRDTVIREHNKWILKKIKFQGNLNTKKMLNPGKLSEQLDREGHKRNIYNNQISTVMSSAGIRLEKLPIVRAQTDTKSFHEAIRDKIDKNENRQNPELHNKLLEIFHTIADPSLKHTYGEVTWEQLEAGINRKGAAGFLEKKNIGEVLDSEKHLVEQLVRDLKAGRKIRYYETAIPKNEKRDVSDDWQAGDLVDEKKPRVIQYPEAKTRLAITKVMYNWVKQQPVVIPGYEGKTPLFNIFNKVRKEWDLFNEPVAVSFDTKAWDTQVTSRDLHLIGEIQKYYYRKEWHKFIDTITDHMVEVPVITADGEVYIRNGQRGSGQPDTSAGNSMLNVLTMIYAFCESTGVPYKSFNRVAKIHVCGDDGFLITEKGLGLKFSNKGMQILHEAGKPQKLTEGEKMKVAYKFEDIEFCSHTPVPVRWSDNTSSYMAGRDTAVILSKMATRLDSSGERGTTAYEKAVAFSFLLMYSWNPLVRRICLLVLSQRPETAPSTQTTYYYKGDPIGAYKDVIGRNLSELKRTGFEKLANLNLSLSTLGIWTKHTSKRIIQDCVAIGKEEGNWLVNADRLISSKTGHLYIPDKGFTLQGKHYEQLQLGAETNPVMGVGTERYKLGPIVNLLLRRLKVLLMAAVGASS", "sequence_length": 3898, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5a26b6c4b0ad92701a9725c4c4073e6979933dff3e88d9754c328a46ad7b127a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q01499.json", "taxon_id": "31656", "uniprot_accession": "Q01499", "uniprot_release": "2026_03" } ], "pfam_id": "PF11889", "short_name": "Capsid_pestivir", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3410-pf11890.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11890", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3410-pf11890.yaml" } ], "pfam_ids": [ "PF00389", "PF02826", "PF11890" ], "protein_name": "Erythronate-4-phosphate dehydrogenase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIVVDENMPHARELFAEFGEVIPLPGRQMLATDLQEADVLLVRSVTRVDAALLASCPRLSFVGTATIGTDHVDKGLLAERGIPFFSAPGCNKYSVGDYVLSALLVLAERHELNLGAMSLAVIGAGNTGECVAGKAEALGMRVLRCDPPRARAAEANEAAQFVDYQQALEADIVSFHVPITRQGPDATFHLLDAAQIAARPAGQILINASRGEVWDNQALLARQQSQAPLRLVMDVWEGEPEPLQALVPHTELATPHIAGYSLEGKARGTWMLYEALCRQLRRTPRQDLQSLLPIPEVREVTPGQSADQALIKQLVHLIYDVRRDDARFRNRLGVAGSFDEQRKHYPERRELSSLQLKGPFAGAALARLGFVCQPD", "sequence_length": 376, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "48a4d2556e3797c622d543094ac04a9e9f5ab01f72e45a48a1b64c6f7d56aa49", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0KLP0.json", "taxon_id": "380703", "uniprot_accession": "A0KLP0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "P05459", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/pyridoxal-5-phosphate-biosynthesis-i.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PYRIDOXSYN-PWY", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/pyridoxal-5-phosphate-biosynthesis-i.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3410-pf11890.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11890", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3410-pf11890.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P05459", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00389", "PF02826", "PF11890" ], "protein_name": "Erythronate-4-phosphate dehydrogenase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "90ee13c19ebac8916885cadee46c8356464780fdaa188598c23c5c22db1b700a", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKILVDENMPYARDLFSRLGEVTAVPGRPIPVAQLADADALMVRSVTKVNESLLAGKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERDGFSLYDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQRADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVDIGTSHIAGYTLEGKARGTTQVFEAYSKFIGHEQHVALDTLLPAPEFGRITLHGPLDQPTLKRLVHLVYDVRRDDAPLRKVAGIPGEFDKLRKNYLERREWSSLYVICDDASAASLLCKLGFNAVHHPAR", "sequence_length": 378, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "90ee13c19ebac8916885cadee46c8356464780fdaa188598c23c5c22db1b700a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P05459.json", "taxon_id": "83333", "uniprot_accession": "P05459", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3410-pf11890.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11890", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3410-pf11890.yaml" } ], "pfam_ids": [ "PF00389", "PF02826", "PF11890" ], "protein_name": "Erythronate-4-phosphate dehydrogenase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRILADENIPVVDAFFADQGSIRRLPGRAIDRAALAEVDVLLVRSVTEVSRAALAGSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAARCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAERVSLQDVLPETWLAGLQLNPGCDPAWALATLCRAVYDPRSDDAAFRRSLTGDSATRRAAFDALRKHYPPRREITGLRVATGGQAELQRVVRALGAQLV", "sequence_length": 380, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "71fd340f01a86a1d1cf668886d9d335c683e644848da9cad3196e576a8288d9e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9I3W9.json", "taxon_id": "208964", "uniprot_accession": "Q9I3W9", "uniprot_release": "2026_03" } ], "pfam_id": "PF11890", "short_name": "DUF3410", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/l-ornithine-transmembrane-transporter-activity-go0000064.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/ornithine-transport-go0015822.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015822", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/ornithine-transport-go0015822.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/photoperiodism-go0009648.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009648", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/photoperiodism-go0009648.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/plant-organ-development-go0099402.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0099402", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/plant-organ-development-go0099402.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/reticulata-like-pf11891.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11891", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/reticulata-like-pf11891.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:B9DFK5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11891" ], "protein_name": "Protein RETICULATA, chloroplastic", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b5eef5debd808b2f2cc3ffb8bcbb9d129bbd1eb8425899471f9dec9936ad9341", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAGCAMNLQFSSVVKVRNEISSFGICNRDFVFRDLAKAMKVPVLRIRGGSGRQRSRLFVVNMSQSPIEPQSGGFAATEQIKGEGDNSILGKDNVRNLGTDQLENLDIDGNVGDGFNGSDGNGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFAYNALPSSVFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKRNINKSEENIPVPPLIKSAALWGVFLSVSSNTRYQIINGLERVVEASPFAKKFPPAAMAFTVGVRLANNIYGGMQFVDWARLSGCQ", "sequence_length": 432, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b5eef5debd808b2f2cc3ffb8bcbb9d129bbd1eb8425899471f9dec9936ad9341", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B9DFK5.json", "taxon_id": "3702", "uniprot_accession": "B9DFK5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/chan-is-an-iron-regulated-heme-binding-protein-this-family-represents--cd14727.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd14727", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/chan-is-an-iron-regulated-heme-binding-protein-this-family-represents--cd14727.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/haem-binding-uptake-tiki-superfamily-chan-ipr007314.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007314", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/haem-binding-uptake-tiki-superfamily-chan-ipr007314.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cofac-haem-bdg-pf04187.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04187", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cofac-haem-bdg-pf04187.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/reticulata-like-pf11891.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11891", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/reticulata-like-pf11891.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-40-50-11550-3-40-50-11550.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.50.11550", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-40-50-11550-3-40-50-11550.yaml" } ], "pfam_ids": [ "PF04187", "PF11891" ], "protein_name": "Protein RETICULATA-RELATED 6, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLTTNDLFASQPLFHCPCSSSSRPRRRRFYGLHFPINLTSEKNNSLSIVALSDSDLPSRTAFSRRAFLLAPPLLVSAASLFLKPSVSLASEESSSATVTSPAESAAPPPPPATTTPSPPPPVNKEETITSRIYDATAIGEPMAMGKDKKKVWEKLLNARVVYLGEAEQVPTKDDKELELEIVRNLRKRCVESERQISVALEAFPLDLQDQLNQYMDKRMDGETLKSYVTHWPAQRWQEYEPLLSYCRDNSVRLIACGTPLKVLRTVQAEGIRGLSKSERKLYTPPAGSGFISGFSSFSRRSTFDMSLPTQIVPFGPSSYLSAQARVVEDHTMSQVILQAVADGGGTGLLLVVTGASHVEYGSRGTGLPARISRKFPKKNQVVVLLDPERQFLRREGETPVADFLWYSAARPCSRNCFDRAEIARVMNAAGRRRDALPPDIQNGLDLGLVSPEVLQNLFDLEQYPLISELTQRFQGFRERLLADPKFLNRLAIEEAISITTTLIAQYEKRKENFFEEIDYVITDTVRGSVVDFFTVWLPAPTLSFLSYADETTGPDSIDALRGLLGSIPDNAFQKSLAGREWNLNLRIASVIVGGLKLAGVGVVSSFAAVGASNALNIARKVIKPELVVAEKPKRSPLLKTAMVYGGFLGTSANLRYQIIAGLIEHRLSDELSSQPLLVNAISFVVRTLNSYFGTQQWIDLARSTGLQTQKSIPASKEISEALEEPTVECDTTTEEESIDKLNNQ", "sequence_length": 745, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "373f3419924766a65f67d3f3c6f7a671456fe3f0672eb6b21d581064a1a26abe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8RWG3.json", "taxon_id": "3702", "uniprot_accession": "Q8RWG3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/reticulata-like-pf11891.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11891", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/reticulata-like-pf11891.yaml" } ], "pfam_ids": [ "PF11891" ], "protein_name": "Protein RETICULATA-RELATED 4, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIASCFFCVPTPNTAISESNLTWPHIASFPRLSSSSSFNGVISAKSISFNRRVPITPVLSASSGNGGSDNNGGGLSGGGGGGDGGKNDGDGHGDEDRDRNRNEAMLLLKESGIELESLPKDLAAAIEAGRIPGSVITRFLELQKSAVMRWLMQFGGFRERLLADDLFMAKLAMECGVGIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAPTVSLRPPLALTAGGISKFFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLVGTAITNAFIKARKAVDQNSEGEVETVPIVSTSVAYGVYMAVSSNLRYQIVAGVIEQRLLEPMLHQHKLALSALCFAVRTGNTFLGSLLWVDYARLIGIQKSH", "sequence_length": 386, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1fae75ca9c888ff33f31b78ce55cc79237e5d36018db7d9829a1238bff139604", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q94CJ5.json", "taxon_id": "3702", "uniprot_accession": "Q94CJ5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/reticulata-like-pf11891.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11891", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/reticulata-like-pf11891.yaml" } ], "pfam_ids": [ "PF11891" ], "protein_name": "Protein RETICULATA-RELATED 3, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAMAAKLQLSAKSDQSSVRLPRVINLSRDPTTRVSFPRNGSVCSLHTNFSSPHLAKPCAGGGGGGSTGNNGGGSGSGGGGGGFGGSGGEASEESSPWGPIGLFIQGWRSRVAADPQFPFKVLMEEIVGLSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFVLMYMLAPTAATLGSSQTLPGIFRNCPSSHMFEQGSFTVMNRFGTLVYKGMVFASVGLAAGLVGTAISNGLIMLRKKMDPSFETPNKPPPTVLNSLTWATHMGVSANARYQTLNGIEFLLAKVLPPLVFKTSVIVLRCANNVAGGMSFVLLARMTGSQSVEEKTEISEKEKDD", "sequence_length": 337, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f5bb3d7f4bb379921dd2ade1c7f9b256e96c378af14f8b1a622ae4212521aa2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9C9Z2.json", "taxon_id": "3702", "uniprot_accession": "Q9C9Z2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/reticulata-like-pf11891.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11891", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/reticulata-like-pf11891.yaml" } ], "pfam_ids": [ "PF11891" ], "protein_name": "Protein RETICULATA-RELATED 2, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAMAAKLHISTKSDQSNVRLPRLINLSRDPTARVLFPRNGSVSSLHTNFSSPNIMVPCAGGGGGGSIGNHGGGSGSGGGGGGYGGSEEEESSPWGPLGLFIQGWRSRVAADSQFPFKVLMEMLVGVSANVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPSAISHGSSNLLPGIFRSCPSSHMFEQGNFTLMNRFGTLVYKGMVFATVGLAAGLVGTAISNGLIMLRKKIDPSFETPNKPPPTLLNSLTWATHMGVSANVRYQTLNGAEFLLEKSLPPLVFKTSVIALRVVNNVLGGMSFVTLARMTGSQSVEEEKKIEMSEISEKEKED", "sequence_length": 339, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4e612f1bb89ce93cb9d6439070e03a0f3d809bfdc5387968f55824d5740d400b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9C9Z3.json", "taxon_id": "3702", "uniprot_accession": "Q9C9Z3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", 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"MSISLKISHISSFSNDGFNSVKQCRVSQRFEIRSVCFRRSPGVESRRIHLNSDLSSRNLRNRCVGSDVVTGEISGRSIPDWAYSGVKDETLSDLEPELDDGDGGDENGNNDGGGNGGNGDGGGGGGDGEGDDGEDEADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRSCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIATFFYKGLLYGSVGFGCGLIGQGIANLIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ", "sequence_length": 433, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "43ad3777672e670cabfecb10814dfb45c2eb42a3b0966b6305789da1d458c20f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FGP9.json", "taxon_id": "3702", "uniprot_accession": "Q9FGP9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/inner-membrane-protein-yejm-n-terminal-ipr024588.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3413-pf11893.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11893", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3413-pf11893.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AD27", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00884", "PF11893" ], "protein_name": "Inner membrane protein PbgA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0c182dd04dc8b30f274fa05ac20dbc17fc2e0b1c9b1a5d68baa8d42620175bf8", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWPTTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLLIDSEVFTRFHLHLNPIVWQLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKLRSLTRRRRFARPLAAFLFIAFIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFLEKHGLLDAQEYQRRLIEQGNPDAVSVQYPLSELRYRDMGTGQNVLLITVDGLNYSRFEKQMPALAGFAEQNISFTRHMSSGNTTDNGIFGLFYGISPSYMDGILSTRTPAALITALNQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRTQSDEQTATQWINWLGRYAQEDNRWFSWVSFNGTNIDDSNQQAFARKYSRAAGNVDDQINRVLNALRDSGKLDNTVVIITAGRGIPLSEEEETFDWSHGHLQVPLVIHWPGTPAQRINALTDHTDLMTTLMQRLLHVSTPASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRGERVKDEKPQLSLLLQVLTDEKRFIAN", "sequence_length": 586, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0c182dd04dc8b30f274fa05ac20dbc17fc2e0b1c9b1a5d68baa8d42620175bf8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AD27.json", "taxon_id": "83333", "uniprot_accession": "P0AD27", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3413-pf11893.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11893", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3413-pf11893.yaml" } ], "pfam_ids": [ "PF00884", "PF11893" ], "protein_name": "Inner membrane protein PbgA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWPTTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLLIDSEVFTRFHLHLNPIVWQLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKLRSLTRRRRFARPLAAFLFIAFIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFLEKHGLLDAQEYQRRLIEQGNPDAVSVQYPLSELRYRDMGTGQNVLLITVDGLNYSRFEKQMPALAGFAEQNISFTRHMSSGNTTDNGIFGLFYGISPSYMDGILSTRTPAALITALNQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRTQSDEQTATQWINWLGRYAQEDNRWFSWVSFNGTNIDDSNQQAFARKYSRAAGNVDDQINRVLNALRDSGKLDNTVVIITAGRGIPLSEEEETFDWSHGHLQVPLVIHWPGTPAQRINALTDHTDLMTTLMQRLLHVSTPASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRGERVKDEKPQLSLLLQVLTDEKRFIAN", "sequence_length": 586, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0c182dd04dc8b30f274fa05ac20dbc17fc2e0b1c9b1a5d68baa8d42620175bf8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AD29.json", "taxon_id": "83334", "uniprot_accession": "P0AD29", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3413-pf11893.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11893", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3413-pf11893.yaml" } ], "pfam_ids": [ "PF00884", "PF11893" ], "protein_name": "Inner membrane protein PbgA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVTHRQRYREKVSQMVSWGHWFALFNILLATLLGSRYLFVADWPTTLAGRIYSYLSIVGHFSFLVFATYLLILFPLTFIVMSQRLMRFLSAILATAGMTLLLIDSEVFTRFHLHLNPIVWELVINPDQNEMARDWQLMFISVPVILLIEMLFATWSWQKLRSLTRRRHFARPLAAFFFVSFIASHLIYIWADANFYRPITMQRANLPLSYPMTARRFLEKHGLLDAQEYQRRLVEQGNPEAVSVQYPLSNLHYRDMGTGQNVLLITVDGLNYSRFEKQMPELATFAEQNIDFTRHMSSGNTTDNGIFGLFYGISPGYMDGVLSTRTPAALITALNQQGYQLGLFSSDGFASPLYRQALLSDFSMPAAQTQSDAQTASQWIDWLGRYAQEDNRWFSWISFNGTNIDDSNQKNFVKRYASAASDVDAQINRVLNALREAGKFDNTVVIITAGRGIPLTPEENRFDWSQGHLQVPLVIHWPGTPAQRINVLTDHTDVMTTLMQRLLHVSTPANEYSQGQDIFTVPRRHNWVTAADGSTLAITTPQMTLVLNNNGHYQTYDLHGEKIKDQKPQLSLLLQVLTEEKRFIAN", "sequence_length": 586, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3aa60fdc9cd0c68501f095fab993e689b6ae39680c24a86a9599c0a2b9d489c8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P40709.json", "taxon_id": "99287", "uniprot_accession": "P40709", "uniprot_release": "2026_03" } ], "pfam_id": "PF11893", "short_name": "DUF3413", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/nup192-pf11894.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11894", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/nup192-pf11894.yaml" } ], "pfam_ids": [ "PF11894" ], "protein_name": "Nuclear pore complex protein NUP205", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSPKDLVAIVHSSLLGTSRPTPTQRIELTHAIRNSFPSLQNLLSFPPPKPSDRAQVQSKEIRLPDSLPISLDDQDIAISLKLSDELHLNEIDSVRLLVSSNQEWGLMGRDPLEIQRLATGLWYTGRRDLTSTLYTLLRAVVLDEGLEPDLIADIQGLLEELIEAGLRQRLITLIKELNREDPTGLGGPLCERYLIDSRGALVERRAVVQRERLILGHCLVLSILVDRPGSKDVKDIYYILKDNAAQLTEGNDTISSQITFSLLFSLIITFVSDAISRLSDKSSMISQDASFRTDFQDIVMASGSDPTADGFIGGIRLAWAVHLMLIHDGISGMDTISTASTTDMGHICSCLESIFSKNVFQFLLDNVLRTAAYQNDEEDIIYIYNAYLHKLASCFLSHPIARDKVKESKDMAMSVLNSYRTSDPLDGSMQTEESDRPLPFISLMEFKEPELLSGNDVLWTFVNFAGEDHTNFKTLVAFLEMLCTLASTQEGASKVYELLRGTSFRSIGWPTLFDCIRIYDEKFKQSLQTAGAMMPEFLEGDAKALVAYLNVLQKVVENGNPTERKNWFPDIEPFFKLLGYENIPPYLKGALRKTIAAFVNVFPEMRDSIWAFLEQYDLPVVVGSQVGKSDQSSQVYDMQFELNEVEARREQYPSTISFLNLINALIAGEKDVNDRGRRAYSDPCEKWQLVVACLQHFHMILSMYDIQEEDLDGFTEHPHFLVSLETSSLQTQLPIIELLKDFMSGKALYRNLMGILQVGVNSIISERLSKTYGKILEKAVQLSLEILLLVFEKDLLVSDVWRPLYQPLDIILSQDHNQIIALLEYVRYDSLPQIQRSSIKIMNILRCSRLVGLVPMLIKIDAANSLIEDYAACLEGRLEEGEVVENSCDDLGVLIMQLLVDNINRPAPSITHLLLKFDLDAPVEGTVLQPKFHYSCLKVILEMLEKLPNPDINFLLFEFGFQLLCELNLDPLTSGPTMDLLSSKKYQFFLQHLDTIGVATLPKRSGSQALRISSLHQRAWLLKLLAIALHTGSGSSSAHLEACQSILSHLFGREVTEAANEPFSSSTYPQDGLDYAGTSSISKSKALALLEILQFRSPDASMQLPQIVSSLKYDSLVEDILGNRDTSVSGSIYYYSERGDRLIDLSSFSNKLWQKLHSGFPLVDSFPNVAELSEVRETIQQLLKWGWKYNRNLEEQAAQLHMLAGWSQIVEVSACRRISSLDNRSEILYRILDASLSASASPDCSLKMAFVLTQVALTCIAKLRDDRFSFQGALSSDTVTCLDVMMVKHLSTGACHSVLFKLVMAILRHESSESLRRRQYALLLSYFQYCQHMIALDVPTSVVQFLLLNEQDGEDLDIQKIDKEQADLARANFFIIKKEAQGILDLVIKDASQGSEFGKTISLYVLEALVCIDHERYFLSQLQSRGFIRSCLGSISNISYQDGTHLLESQQRACTLEAELALLLRISHKYGKSGGQVLFSMGALEHIASCRAISFKGNMRRVDMKLQSDVGYNVQKQRTIITAVLRLVFALTSLVETSEFFEGRNKIVRDVVEFIKGHQSLFDQLLREDFTQADDLLMEQIILAVGILSKVWPFEENDGYGFVQGLFDMMSKLFIASPIKSILSQGSELKLSQLRFSLTSYLYFLVTKNSLRLQVSDDSLDSSTKLRQPTLLLLASLLSHVTDSLERAAEKKSLLLHKIRDINELSRQDVDAIIKICDSQEYVTPSDNIHKRRYIAMVEMCQIVGNRDQLITLLLQLAEHVLNIILIHLQDRSVSSNERGSYGSKSHIQQEVTDLCGKLSPTIDRLALLNEGKVGHNLKVFQRLATTVKEMAIQKCV", "sequence_length": 1838, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b8d94e24ddbe6f1b91109944b4b5c3e888b3f91799a16edfa029f5b79ef05b5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4KBW6.json", "taxon_id": "3702", "uniprot_accession": "F4KBW6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/nuclear-pore-inner-ring-go0044611.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044611", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/nuclear-pore-inner-ring-go0044611.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/nup192-pf11894.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11894", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/nup192-pf11894.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P47054", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11894" ], "protein_name": "Nucleoporin NUP192", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "18cf5bbf9ddad6ba40190fad7e9111ff1ce335d6dbbf81697336a96c64a1187b", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKWSAIPFQTLYRSIESGEFDFDLFKEVLPDLQNLNLNTDKLKNNASRSQLEKGEIELSDGSTFKVNQEFIFEAISLSDELNLDEIVACELILSGDTTANNGKVQYFLRRQYILQIVSFIVNCFHEDTELYQELIKNGALVSNILSAFKFIHTQLSEIKQQINKAQILENYNALFQQNIKFRRDFLLREYDILSQILYGLVDKGAIMKNKDFILSLLHHVSELDSNDFFIIYYTPAFFHLFASLRVLPDADVKLLHSQFMKDLKDDSIYTKPVKVALIFIFFAYFIGWCKEDPKRRADTMDFKTDVDEPMTSAVELGAIEQILIFAADTSIVEQDKSMELFYDIRSLLERHIPRLIPKQLLDDEKIFSQTTNSTYNPASATDNMSGRGLWNPSYPGMMSTTGTARLNSMPNNVNEYSYTTIVLSDQTQEFFLSSFDDVLQTIITDCAFLLTKIKDAEEDSLLSGEDLTLDDISLKADLERFFLSIYFFYASRPEYSCTFWSDKESNAYGFIEWCSRCNDNLMRSCFYLMVSSLSFGPENALNVYHYFGENSSISWKNIAQCLSDYTKKISNFNSSLHKRQQFSESTHNDIDSTAVALEEGLNEEAVIFLSSLLTLVGSVTYQVDEDVKSSLSKVFSDVLFEFTKINTPLVGAAFKVISNLVPKLESSRTKFWSFLDSLIFKDSSLNYSSESYRNAFTNVLTKYSDVLGFLQLFHNLISIHSRENNSEYMVFGKLAFPTRLGQGYRKVGIWPYFDYIFNDILAHVDQIVDIRNKRAVQLPILKIIYTGLCSFDYSVILNSIPAAANLDALVDCENFFNYVQECPAIPIFNYIFTEKIYKSIFNVVDVGVDQLSIELEGGKNQAELLQLAVKIINKVLDYQETYVEELFPIVKKHGKTDYFLPKNYSLHGLRSFYDAIFFNIPLVAHLGLYVGVDDQILATNSLRILAKLSERSNGSVASLSKRNKLLTIFDSVDESARIKDAFITQLESSITDAGVLALKLELLDFLTSNLSNYSRTMTISHLLLGFQVSNVISLGPNLATFISSGTSLLDSLISVLEASLNSITKDNIDYAPMRLATAALEIILKLCRNPLTSGLLYSYLIKENFFERIMILDPQVTRFTTWNGSPFDNSTEEKCKNFIESESVGAFLSFLAYRNYWTQYLGLFIHKISFSGTKSEVLTYVNYLISNTMYSVRLFSFLDPLNYGNICEPKETLSIFTNVPLNLEQVTLNKYCSGNIYDFHKMENLMRLIKRVRAESLHSNSFSLTVSKEQFLKDADVECIKAKSHFTNIISRNKALELNLSVLHSWVQLVQIIVTDGKLEPSTRSNFILEVFGTIIPKISDYIEFNITFSEELVSLAVFLFDIYNRDRKLITDKGTVDGRLYQLFKTCIQGINSPLSSVALRSDFYILANHYLSRVLSDQVGSEKVLQDLRLGSKKLVEIIWNDVVYGEGTSRVTGILLLDSLIQLANRSKENFILDSLMKTTRLLLIIRSLKNTDALLNSTTEHINIDDLLYELTAFKATVFFLIRVAETRGGASALIENNLFRIIAELSFLKVDPDLGLDLMFDEVYVQNSKFLKVNVTLDNPLLVDKDANGVSLFELIVPIFQLISAVLVSMGSSNKAVVQTVKGLLNTYKRLVIGIFKRDLLREKEDKKNSSDPNNQSLNEMVKLIVMLCTLTGYQNND", "sequence_length": 1683, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "18cf5bbf9ddad6ba40190fad7e9111ff1ce335d6dbbf81697336a96c64a1187b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47054.json", "taxon_id": "559292", "uniprot_accession": "P47054", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/nuclear-pore-inner-ring-go0044611.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044611", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/nuclear-pore-inner-ring-go0044611.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/nup192-pf11894.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11894", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/nup192-pf11894.yaml" } ], "pfam_ids": [ "PF11894" ], "protein_name": "Nuclear pore complex protein Nup205", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATPLAVNSAASLWGPYKDIWHKVGNALWRRQPEAVHLLDKILKKHKPDFISLFKNPPKNVQQHEKVQKASTEGVAIQGQQGTRLLPEQLIKEAFILSDLFDIGELAAVELLLAGEHQQPHFPGLTRGLVAVLLYWDGKRCIANSLKALIQSRRGKTWTLELSPELASMTTRFTDELMEQGLTYKVLTLVSQIDVNNEFEKLQRERGLGSEKHRKEVSDLIKECRQSLAESLFAWACQSPLGKEDTLLLIGHLERVTVEANGSLDAVNLALLMALLYCFDISFIEQSTEERDDMIHQLPLLTEKQYIATIHSRLQDSQLWKLPGLQATVRLAWALALRGISQLPDVTALAEFTEADEAMAELAIADNVFLFLMESVVVSEYFYQEEFYIRRVHNLITDFLALMPMKVKQLRNRADEDARMIHMSMQMGNEPPISLRRDLEHLMLLIGELYKKNPFHLELALEYWCPTEPLQTPTIMGSYLGVAHQRPPQRQVVLSKFVRQMGDLLPPTIYIPYLKMLQGLANGPQCAHYCFSLLKVNGSSHVENIQGAGGSPVSWEHFFHSLMLYHEHLRKDLPSADSVQYRHLPSRGITQKEQDGLIAFLQLTSTIITWSENARLALCEHPQWTPVVVILGLLQCSIPPVLKAELLKTLAAFGKSPEIAASLWQSLEYTQILQTVRIPSQRQAIGIEVELNEIESRCEEYPLTRAFCQLISTLVESSFPSNLGAGLRPPGFDPYLQFLRDSVFLRFRTRAYRRAAEKWEVAEVVLEVFYKLLRDYEPQLEDFVDQFVELQGEEIIAYKPPGFSLMYHLLNESPMLELALSLLEEGVKQLDTYAPFPGKKHLEKAVQHCLALLNLTLQKENLFMDLLRESQLALIVCPLEQLLQGINPRTKKADNVVNIARYLYHGNTNPELAFESAKILCCISCNSNIQIKLVGDFTHDQSISQKLMAGFVECLDCEDAEEFVRLEEGSELEKKLVAIRHETRIHILNLLITSLECNPPNLALYLLGFELKKPVSTTNLQDPGVLGCPRTCLHAILNILEKGTEGRTGPVAVRESPQLAELCYQVIYQLCACSDTSGPTMRYLRTSQDFLFSQLQYLPFSNKEYEISMLNQMSWLMKTASIELRVTSLNRQRSHTQRLLHLLLDDMPVKPYSDGEGGIEDENRSVSGFLHFDTATKVRRKILNILDSIDFSQEIPEPLQLDFFDRAQIEQVIANCEHKNLRGQTVCNVKLLHRVLVAEVNALQGMAAIGQRPLLMEEISTVLQYVVGRNKLLQCLHAKRHALESWRQLVEIILTACPQDLIQAEDRQLIIRDILQDVHDKILDDEAAQELMPVVAGAVFTLTAHLSQAVLTEQKETSVLGPAEAHYAFMLDSCFTSPPPEENPLVGFASIGDSSLYIILKKLLDFILKTGGGFQRVRTHLYGSLLYYLQIAQRPDEPDTLEAAKKTMWERLTAPEDVFSKLQRENIAIIESYGAALMEVVCRDACDGHEIGRMLALALLDRIVSVDKQQQWLLYLSNSGYLKVLVDSLVEDDRTLQSLLTPQPPLLKALYTYESKMAFLTRVAKIQQGALELLRSGVIVRLAQCQVYDMRPETDPQSMFGMRDPPMFIPTPVDRYRQILLPALQLCQVILTSSMAQHLQAAGQVLQFLISHSDTIQAILRCQDVSAGSLQELALLTGIISKAALPGILSELDVDVNEGSLMELQGHIGRFQRQCLGLLSRFGGSDRLRQFKFQDDNVEGDKVSKKDEIELAMQQICANVMEYCQSLMLQSSPTFQHAVCLFTPSLSETVNRDGPRQDTQAPVVPYWRLPGLGIIIYLLKQSANDFFSYYDSHRQSVSKLQNVEQLPPDEIKELCQSVMPAGVDKISTAQKYVLARRRLVKVINNRAKLLSLCSFIIETCLFILWRHLEYYLLHCMPTDSQDSLFASRTLFKSRRLQDSFASETNLDFRSGLAIVSQHDLDQLQADAINAFGESLQKKLLDIEGLYSKVRSRYSFIQALVRRIRGLLRISRN", "sequence_length": 2012, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6e00262c5560579863cec7807a2f4d641242123d561116dd0ff25689e757875f", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q92621.json", "taxon_id": "9606", "uniprot_accession": "Q92621", "uniprot_release": "2026_03" } ], "pfam_id": "PF11894", "short_name": "Nup192", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Phanerodontia chrysosporium", "origins": [ { "cited_uniprot_accession": "Q02567", "commit": "62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "TraitMech", "path": "data/traits/metabolism/manganese_oxidation.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "traitmech:000032", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/TraitMech/blob/62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b/data/traits/metabolism/manganese_oxidation.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q02567", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00141", "PF11895" ], "protein_name": "Manganese peroxidase 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b994a3b9aa22f2c21cb44923654df8a0f4d9f842aac86370886192d45375d5fd", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAFKSLIAFVALAAAVRAAPTAVCPDGTRVSHAACCAFIPLAQDLQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANNGIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARADKVDQTIDAAPFDSTPFTFDTQVFLEVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQSDFALAHDPRTACIWQGFVNEQAFMAASFRAAMSKLAVLGHNRNSLIDCSDVVPVPKPATGQPAMFPASTGPQDLELSCPSERFPTLTTQPGASQSLIAHCPDGSMSCPGVQFNGPA", "sequence_length": 378, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b994a3b9aa22f2c21cb44923654df8a0f4d9f842aac86370886192d45375d5fd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q02567.json", "taxon_id": "2822231", "uniprot_accession": "Q02567", "uniprot_release": "2026_03" } ], "pfam_id": "PF11895", "short_name": "Peroxidase_ext", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glge-c-pf21702.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glge-c-pf21702.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/glge-dom-n-s-pf11896.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11896", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/glge-dom-n-s-pf11896.yaml" } ], "pfam_ids": [ "PF11896", "PF21702" ], "protein_name": "Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGRAIGTETEWWVPGRVEIDDVAPVVSCGVYPAKAVVGEVVPVSAAVWREGHEAVAATLVVRYLGVRYPHLTDRPRARVLPTPSEPQQRVKPLLIPMTSGQEPFVFHGQFTPDRVGLWTFRVDGWGDPIHTWRHGLIAKLDAGQGETELSNDLLVGAVLLERAATGVPRGLRDPLLAAAAALRTPGDPVTRTALALTPEIEELLADYPLRDLVTRGEQFGVWVDRPLARFGAWYEMFPRSTGGWDDDGNPVHGTFATAAAELPRIAGMGFDVVYLPPIHPIGKVHRKGRNNSPTAAPTDVGSPWAIGSDEGGHDTVHPSLGTIDDFDDFVSAARDLGMEVALDLALQCAPDHPWAREHRQWFTELPDGTIAYAENPPKKYQDIYPLNFDNDPEGLYDEVLRVVQHWVNHGVKFFRVDNPHTKPPNFWAWLIAQVKTVDPDVLFLSEAFTPPARQYGLAKLGFTQSYSYFTWRTTKWELTEFGNQIAELADYRRPNLFVNTPDILHAVLQHNGPGMFAIRAVLAATMSPAWGMYCGYELFEHRAVREGSEEYLDSEKYELRPRDFASALDQGRSLQPFITRLNIIRRLHPAFQQLRTIHFHHVDNDALLAYSKFDPATGDCVLVVVTLNAFGPEEATLWLDMAALGMEDYDRFWVRDEITGEEYQWGQANYIRIDPARAVAHIINMPAVPYESRNTLLRRR", "sequence_length": 701, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "adbd5e1de4f9eb36b762440cebe3736ca3baa9e5178a9bf98b79dc9ffb43937c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WQ17.json", "taxon_id": "83332", "uniprot_accession": "P9WQ17", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glge-c-pf21702.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glge-c-pf21702.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/glge-dom-n-s-pf11896.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11896", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/glge-dom-n-s-pf11896.yaml" } ], "pfam_ids": [ "PF11896", "PF21702" ], "protein_name": "Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPATHHSSATSAERPTVVGRIPVLDVRPVVQRGRRPAKAVTGESFEVSATVFREGHDAVGANVVLRDPRGRPGPWTPMRELAPGTDRWGATVTAGETGTWSYTVEAWGDPVTTWRHHARIKIPAGLDTDLVLEEGARLYERAAADVPGREDRRELLAAVDALRDESRPAASRLAAALTPQVDAVLARHPLRDLVTSSDPLPLLVERERALYGAWYEFFPRSEGTPHTPHGTFRTAARRLPAIAAMGFDVVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPWAIGSPEGGHDSIHPALGTLDDFDHFVTEAGKLGLEIALDFALQCSPDHPWVHKHPEWFHHRPDGTIAHAENPPKKYQDIYPIAFDADPDGLATETVRILRHWMDHGVRIFRVDNPHTKPVAFWERVIADINGTDPDVIFLAEAFTRPAMMATLAQIGFQQSYTYFTWRNTKQELTEYLTELSGEAASYMRPNFFANTPDILHAYLQHGGRPAFEVRAVLAATLSPTWGIYSGYELCENTPLREGSEEYLDSEKYQLKPRDWTRAAREGTTIAPLVTRLNTIRRENPALRQLRDLHFHPTDKEEVIAYSKRQGSNTVLVVVNLDPRHTQEATVSLDMPQLGLDWHESVPVRDELTGETYHWGRANYVRLEPGRTPAHVCTVLRPSHPQIGGSHTT", "sequence_length": 675, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6c916b595ed809536aedac1aba41d86ccc6fa4c0ed5e3e5024dc46342e7905db", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9L1K2.json", "taxon_id": "100226", "uniprot_accession": "Q9L1K2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glge-c-pf21702.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glge-c-pf21702.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/glge-dom-n-s-pf11896.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11896", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/glge-dom-n-s-pf11896.yaml" } ], "pfam_ids": [ "PF11896", "PF21702" ], "protein_name": "Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSGWVAGRIGIDDVAPVVSCGRYPAKAVVGEVVPVRATVWREGHDAVSATLVVRYLGTEFPRLASGPGTTPPAVPLGTVVQPGKRVKPQILQMSKGRTPDVFHGEFTPDAVGLWTFRVDGWGDPIATWRHAVEAKLEAGQSETELNNDLLVGARLLMRAAEGVPRKLRDPLLEAAQQLRTPGDPYQRAGGALSPEVADLLLQYPLREFVTRGEVHGVWVDRPLARFSSWYEMFPRSTGGWDENGHPVHGTFATAAAALPRIARMGFNVVYLPPIHPIGKVHRKGRNNSVTAAPGDVGSPWAIGSDEGGHDAVHPDLGTIDDFDAFVAAARDAGLEVALDLALQCAPDHPWAKEHPEWFTVLPDGTIAYAENPPKKYQDIYPLNFDNDPDGLFHEVLRVVKFWISHGVKVFRVDNPHTKPPNFWAWLIAEVKNEDPDILFLSEAFTRPARLYGLAKLGFTQSYTYFTWRTAKWELTEFGEEIAKYADHARPNLWVNTPDILHESLQHGGPGMFAIRAVLASTMSSSWGVYSGYELFEHRSVREGSEEYLDSEKYELRPRDFDGALARGESLEPFLTRLNEIRRLHPALRQLRTIKFHHLDNDALLAYSKFDPVTGDTVLVVVTLNPFGPEESTLWLDMEALGMEPYDRFWVRDEITGEEYQWGQSNYVRIEPAKAVAHVLNMPLIPYEKRLDLLRRE", "sequence_length": 697, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "12769546ce24ce4df8e17f1d168f186118e4c592676d129f34b2ba8b3c9d6e43", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RP48.json", "taxon_id": "246196", "uniprot_accession": "Q9RP48", "uniprot_release": "2026_03" } ], "pfam_id": "PF11896", "short_name": "GlgE_dom_N_S", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aquifex aeolicus (strain VF5)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3417-pf11897.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11897", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3417-pf11897.yaml" } ], "pfam_ids": [ "PF00343", "PF11897" ], "protein_name": "Glycogen phosphorylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEEKVKEGLWELAYNLWWTWNPPAKELFRSIDPLLWKETKENPIELLRKTKLLENKLKDEDFISHFKYVYSLYKTYMNRHSKYEDTYKKPIVFLSPEYGLHHTLLIYAGGLGFLAGDILKESSDLGFPLIGVGFMYPQGYVKQRIRVDGWQEDLDAQNQKELMPVKKVLDKEGKWLKCYVYVRDEKVYFGVWEVNVGKTKLYLLDTNVEENTPWNREISSRLYVPDKDLRLRQQIVLGFGTVILLEKLGIDAGGFHINEDYPSFVFLAEIFKLLKKGLTWDKAIEEVRKISLFTTHTPLRVAVNTYPFHMIEEQFLFVKDVYGIDVKKVLELGTNPEDPSEGFNSTIMSLRLAKYVNAVSKRHQEVSSKMWSFLFKEKENPIDYVTNGVHFPTWICSDLRRLYEEYLGENFVELHDHKSLWELIRDIPDEELWEYHIRNKERLIEHIKDRARERWVKEKADPSILMAEGLFLDSDVLTVGFARRMTGYKRPDLIFTDVERLKKIVNDSERPVQIIFAGKAHPADIEGKKIIQRIFNFAKDPEFGGRIAFVEDYDELLAHYMVRGVDVWLNNPLPPLEACGTSGMKASMNGVLHLSILDGWWIEGYNGKNGWAFGDYEVEGDRNRADAEAIYNILENEVIPLYYERDERGVPVKWISMMKEAIKSITPNFCSRRMLKDYINKFYSKILKEEG", "sequence_length": 692, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "afeb430d5276d08f2294f0e1cef60411c1b7da6eed51609890f8145ff7ebf1d4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O66932.json", "taxon_id": "224324", "uniprot_accession": "O66932", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glgp-c-pf28476.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28476", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glgp-c-pf28476.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3417-pf11897.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11897", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3417-pf11897.yaml" } ], "pfam_ids": [ "PF00343", "PF11897", "PF28476" ], "protein_name": "Glycogen phosphorylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKALRRFTVRAHLPERLAALDQLSTNLRWSWDKPTQDLFAAIDPALWEQCGHDPVALLGAVNPARLDELALDAEFLGALDELAADLNDYLSRPLWYQEQQDAGVAAQALPTGIAYFSLEFGVAEVLPNYSGGLGILAGDHLKSASDLGVPLIAVGLYYRSGYFRQSLTADGWQHETYPSLDPQGLPLRLLTDANGDPVLVEVALGDNAVLRARIWVAQVGRVPLLLLDSDIPENEHDLRNVTDRLYGGDQEHRIEQEILAGIGGVRAIRAYTAVEKLTPPEVFHMNEGHAGFLGIERIRELVTDAGLDFDTALTVVRSSTVFTTHTPVPAGIDRFPLEMVQRYVNDQRGDGRSRLLPGLPADRIVALGAEDDPAKFNMAHMGLRLAQRANGVSLLHGRVSRAMFNELWAGFDPDEVPIGSVTNGVHAPTWAAPQWLQLGRELAGSDSLREPVVWQRLHQVDPAHLWWIRSQLRSMLVEDVRARLRQSWLERGATDAELGWIATAFDPNVLTVGFARRVPTYKRLTLMLRDPDRLEQLLLDEQRPIQLIVAGKSHPADDGGKALIQQVVRFADRPQVRHRIAFLPNYDMSMARLLYWGCDVWLNNPLRPLEACGTSGMKSALNGGLNLSIRDGWWDEWYDGENGWEIPSADGVADENRRDDLEAGALYDLLAQAVAPKFYERDERGVPQRWVEMVRHTLQTLGPKVLASRMVRDYVEHYYAPAAQSFRRTAGAQFDAARELADYRRRAEEAWPKIEIADVDSTGLPDTPLLGSQLTLTATVRLAGLRPNDVTVQGVLGRVDAGDVLMDPVTVEMAHTGTGDGGYEIFSTTTPLPLAGPVGYTVRVLPRHPMLAASNELGLVTLA", "sequence_length": 863, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d764f768fdd4b45eb5772292eae5e574502d1361f28b2959b45a506982e4e0da", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WMW0.json", "taxon_id": "83331", "uniprot_accession": "P9WMW0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glgp-c-pf28476.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28476", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glgp-c-pf28476.yaml" } ], "pfam_ids": [ "PF00343", "PF11897", "PF28476" ], "protein_name": "Glycogen phosphorylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKALRRFTVRAHLPERLAALDQLSTNLRWSWDKPTQDLFAAIDPALWEQCGHDPVALLGAVNPARLDELALDAEFLGALDELAADLNDYLSRPLWYQEQQDAGVAAQALPTGIAYFSLEFGVAEVLPNYSGGLGILAGDHLKSASDLGVPLIAVGLYYRSGYFRQSLTADGWQHETYPSLDPQGLPLRLLTDANGDPVLVEVALGDNAVLRARIWVAQVGRVPLLLLDSDIPENEHDLRNVTDRLYGGDQEHRIKQEILAGIGGVRAIRAYTAVEKLTPPEVFHMNEGHAGFLGIERIRELVTDAGLDFDTALTVVRSSTVFTTHTPVPAGIDRFPLEMVQRYVNDQRGDGRSRLLPGLPADRIVALGAEDDPAKFNMAHMGLRLAQRANGVSLLHGRVSRAMFNELWAGFDPDEVPIGSVTNGVHAPTWAAPQWLQLGRELAGSDSLREPVVWQRLHQVDPAHLWWIRSQLRSMLVEDVRARLRQSWLERGATDAELGWIATAFDPNVLTVGFARRVPTYKRLTLMLRDPDRLEQLLLDEQRPIQLIVAGKSHPADDGGKALIQQVVRFADRPQVRHRIAFLPNYDMSMARLLYWGCDVWLNNPLRPLEACGTSGMKSALNGGLNLSIRDGWWDEWYDGENGWEIPSADGVADENRRDDLEAGALYDLLAQAVAPKFYERDERGVPQRWVEMVRHTLQTLGPKVLASRMVRDYVEHYYAPAAQSFRRTAGAQFDAARELADYRRRAEEAWPKIEIADVDSTGLPDTPLLGSQLTLTATVRLAGLRPNDVTVQGVLGRVDAGDVLMDPVTVEMAHTGTGDGGYEIFSTTTPLPLAGPVGYTVRVLPRHPMLAASNELGLVTLA", "sequence_length": 863, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "94b616ecf73387e3b7d6641441b6d14a087ddcd980a5617a36a0f73343165a99", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WMW1.json", "taxon_id": "83332", "uniprot_accession": "P9WMW1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glgp-c-pf28476.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28476", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glgp-c-pf28476.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3417-pf11897.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11897", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3417-pf11897.yaml" } ], "pfam_ids": [ "PF00343", "PF11897", "PF28476" ], "protein_name": "Maltodextrin phosphorylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METVVNQIKSKLPENLEGLLDLAYNYWWSWNRRATKLWEKIDPEHWWEYKNPVKLLLDTPEERLKELSKDDDFINLYELVIDQFRHYMNPESTWFSTNYPKWEEPVIYLCMEYGISKSLPIYSGGLGILAGDHIKTASDLGIPLIAIGLLYKHGYFKQEIDKDGKQIEVFPEYNPEEMPIKPLTTEKGKPLLIEVPIEDRIVYARAFEVNVGRVKLYLLDTDVPQNSPDDRTICDYLYNAEIDKRIKQEILLGIGGMRLLRMLGIDPAVIHLNEGHPAFANFQRIAWYMEEGLNFLEALTVVRGTTIFTTHTPVPAGHDKFPIAEVEKRLAKFLEGLPKDEFLNLGREGDQFNMTLLSIRTSSYVNAVSKLHSKVTKEMWRHLWNGVPLDEIPVEGITNGVHTKTWLHNEIKKLVDRYIGRVWRDYAELEGLWYGVERIPDEELWEAHLKAKREFIELIKRKIKERNERLGIEEPLPEIDENALIIGFARRFATYKRATLILTDLERLKKIVNNPERPVYIIFGGKAHPRDEAGKEFLRKVYEVSQMPEFKNKIMVFENYDMGSARAMVAGVDVWLNNPRRPLEASGTSGMKAGLNGVLNLSVYDGWWVEGYNGKNGWVIGDESLEPETEKDNIRDAQSLYNLLENEVIPTYYENRARWIYMMKESIKSIAPRFSTHRMVKEYVDKFYSKALANAILLQRDSFKATREIASWKAKIFNSWDKVEIERIITHDATGVEVIVNLDGLSPEDVKVEIYYGVKAEGYAIEKPYVIELKHPQSLGGNRWLYRYEGNALKNLGHPCWHYAVRVYPYHDKLPHKFLLGLIKWKGFFEL", "sequence_length": 831, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "45c2012aa82fa22f13f242a177cdd17717eab1d8318e88186d6333854b871587", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9YGA7.json", "taxon_id": "523849", "uniprot_accession": "Q9YGA7", "uniprot_release": "2026_03" } ], "pfam_id": "PF11897", "short_name": "DUF3417", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3418-pf11898.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3418-pf11898.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P43329", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00270", "PF00271", "PF04408", "PF07717", "PF11898", "PF21010", "PF29298" ], "protein_name": "ATP-dependent RNA helicase HrpA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a94db898b0fab414fbf16ed576e7d728479962975b63fd93167e30f872012bb3", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVKPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEKVRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG", "sequence_length": 1300, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a94db898b0fab414fbf16ed576e7d728479962975b63fd93167e30f872012bb3", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P43329.json", "taxon_id": "83333", "uniprot_accession": "P43329", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3418-pf11898.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3418-pf11898.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF07717", "PF11898", "PF21010", "PF29298" ], "protein_name": "ATP-dependent RNA helicase HrpA homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNSSVKHTLTPLQQSLFSQLNDIMLVDQRRLSARIHGIGKIKSQEAQQAVAAEIQQQIEQARLRVEQRKSAVQNPIVFPESLPVSQRKVEIQKLISEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAARSVAARIAEELETELGGLVGYKVRFNDQISDNTQIKLMTDGILLAEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFSKHFNNAPIIEVSGRTYPVEVRYRPVVEEDDQDQLQGILNAVDELQAEGRGDILIFMNGEREIRDTAEALQKQNLKHTEILPLFARLSAQEQNKIFHPSGLNRIVLATNVAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDERHIQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSIQDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFLNYLRIREWQDIYHQIRLTVREMSLPINSEKAEYQQIHTALLSGLLSHIGLKEAEKQQYLGARNAHFAIFPNSVLFKKQPKWVMAAELVETSKLWGRMVAEIEPEWIEPLAEHLIKKSYSVPLWSKSRGAVIADEKVTLYGVPIVAVRPVNYGAIDPTVSREIFIQSALVEGGWNTKHKFFKENQRLVREVEELEHKSRRRDILVDDRTLFEFYDQRIGTEVVSQKHFDTWWKKAQQKDPELLNFEHSFLINDDAEQVSKLDFPNFWHQGNLKLKLTYQFEPGTDADGVTVHIPLPLLNQVEMTGFDWQIPGLREELVIALIKSLPKSYRRNFVPAPNYAQAFLSRAVPLEKPLLDTLIYELRRMTGVTVEAEHWNWEQIPSHLKMTFRVVDENGKKIAESMNLDELKFNLKDRVQESISAVADDGIEQSGLHIWSFADLPQCYEQKQRGFSVKAFPAIVDEKDAVGIKLFETEFEQSVAMQQGLRRLLLLNVPSPIKYLHEKLPNKAKLGLYFTPFGRVLDLIDDCIACAVDKLIADFGGFVWDEAGFEKLRDFVRENLNEVTVDIAQKVEQILTLTYQLNQRLKGKMDFTMAFALSDIKSQLAGLVYQGFVQKSGYDRLPDLQRYLQAVDKRIDKLAQDVNRDRAAMLRVEQVQQAYQQLLAKLPKSKPISDEVAEIRYMIEELRVSLFAQQLGTKYQISDKRIGNIISQY", "sequence_length": 1304, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "391f6fc8d9a7ce211fb75ade2c862bf2a14bd51357b430677db63935f31299fb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P45018.json", "taxon_id": "71421", "uniprot_accession": "P45018", "uniprot_release": "2026_03" } ], "pfam_id": "PF11898", "short_name": "DUF3418", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11899", "short_name": "DUF3419", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf3420-pf11900.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf3420-pf11900.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P93002", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00651", "PF11900", "PF12313" ], "protein_name": "Regulatory protein NPR1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a0cb9b216eff23cc4e19ce78dd93ee24987a0b68917d94f2050dafb87922c612", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDTTIDGFADSYEISSTSFVATDNTDSSIVYLAAEQVLTGPDVSALQLLSNSFESVFDSPDDFYSDAKLVLSDGREVSFHRCVLSARSSFFKSALAAAKKEKDSNNTAAVKLELKEIAKDYEVGFDSVVTVLAYVYSSRVRPPPKGVSECADENCCHVACRPAVDFMLEVLYLAFIFKIPELITLYQRHLLDVVDKVVIEDTLVILKLANICGKACMKLLDRCKEIIVKSNVDMVSLEKSLPEELVKEIIDRRKELGLEVPKVKKHVSNVHKALDSDDIELVKLLLKEDHTNLDDACALHFAVAYCNVKTATDLLKLDLADVNHRNPRGYTVLHVAAMRKEPQLILSLLEKGASASEATLEGRTALMIAKQATMAVECNNIPEQCKHSLKGRLCVEILEQEDKREQIPRDVPPSFAVAADELKMTLLDLENRVALAQRLFPTEAQAAMEIAEMKGTCEFIVTSLEPDRLTGTKRTSPGVKIAPFRILEEHQSRLKALSKTVELGKRFFPRCSAVLDQIMNCEDLTQLACGEDDTAEKRLQKKQRYMEIQETLKKAFSEDNLELGNSSLTDSTSSTSKSTGGKRSNRKLSHRRR", "sequence_length": 593, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a0cb9b216eff23cc4e19ce78dd93ee24987a0b68917d94f2050dafb87922c612", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P93002.json", "taxon_id": "3702", "uniprot_accession": "P93002", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf3420-pf11900.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf3420-pf11900.yaml" } ], "pfam_ids": [ "PF00651", "PF11900", "PF12313", "PF13637" ], "protein_name": "BTB/POZ domain and ankyrin repeat-containing protein NPR3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METSTISFSSSSPPSPPPPQPAPGDIDAVSLGRLSRNLENLLDPAFLNCADAEIVLASGGGDPGGGAVVGVHRCILAARSRFFYDHFSSAPAPAPATAGDKPQLDLDGLVPGGRHIGRDALVAVLSYLYTGRLRSAPPEAAACLDDGCSHDACRPAIDFVVESTYAASGFQISELVSLFQRRLSDFVNKALAEDILPILVVASTCHLPELLNQCIQRVANSNLDNRYLEKRLPDDLYAKLKEFRVPDEPHSGILDPEHEKRVRNIHKALDSDDVDLVGMLLKESPVTLDDAFAIHYAAAYCEPKVLAELLKLESANVNLKNSSGYTPLHMACMRREPDIIVSLIEKGASVLERTQDGRDALTICKRLTREKDRNEKSEKCKERSKAYLCIGVLQQEIKRRPQILEDQMSAEESIATPLLVDNFHMRLLNLENRVAFARIFFPSEAKLVMRIAQADSTQEFAGLTSANFSKLKEVDLNETPTMQNRRLRERLDALTKTVELGRRYFPHCSEVLDKFLNEESTDLILLESGTAEDQQTKRMRFSELREDVRKAFTKDKAAGAAISSSTSASSSPRYETKLRPGNKKGKLSR", "sequence_length": 589, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f7ee27cdbb5309900e4b9113ec6b6031c217eabb2dcaecd375dd3894dda824a6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q75HA6.json", "taxon_id": "39947", "uniprot_accession": "Q75HA6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf3420-pf11900.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf3420-pf11900.yaml" } ], "pfam_ids": [ "PF00651", "PF11900", "PF12313", "PF12796" ], "protein_name": "Regulatory protein NPR3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATLTEPSSSLSFTSSHFSYGSIGSNHFSSSSASNPEVVSLTKLSSNLEQLLSNSDCDYSDAEIIVDGVPVGVHRCILAARSKFFQDLFKKEKKISKTEKPKYQLREMLPYGAVAHEAFLYFLSYIYTGRLKPFPLEVSTCVDPVCSHDCCRPAIDFVVQLMYASSVLQVPELVSSFQRRLCNFVEKTLVENVLPILMVAFNCKLTQLLDQCIERVARSDLYRFCIEKEVPPEVAEKIKQLRLISPQDEETSPKISEKLLERIGKILKALDSDDVELVKLLLTESDITLDQANGLHYSVVYSDPKVVAEILALDMGDVNYRNSRGYTVLHFAAMRREPSIIISLIDKGANASEFTSDGRSAVNILRRLTNPKDYHTKTAKGRESSKARLCIDILEREIRKNPMVLDTPMCSISMPEDLQMRLLYLEKRVGLAQLFFPTEAKVAMDIGNVEGTSEFTGLSPPSSGLTGNLSQVDLNETPHMQTQRLLTRMVALMKTVETGRRFFPYGSEVLDKYMAEYIDDDILDDFHFEKGSTHERRLKRMRYRELKDDVQKAYSKDKESKIARSCLSASSSPSSSSIRDDLHNTT", "sequence_length": 586, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b27c64033a9edd9f4f13c8dc98eecf00f252ce10f0afe8841558ec203f872e6f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8L746.json", "taxon_id": "3702", "uniprot_accession": "Q8L746", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9M1I7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00651", "PF11900", "PF12796" ], "protein_name": "Regulatory protein NPR6", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "64f9a5a624dfde3dee6ec7be7dbeba385725e2cbf5b3928cb7919924b8481810", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSNTFEESLKSMSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCESDPSQPGAEPANQTGSGARAAAVGGVIPVNSVGYEVFLLLLQFLYSGQVSIVPHKHEPRSNCGDRGCWHTHCTAAVDLSLDILAAARYFGVEQLALLTQKHLTSMVEKASIEDVMKVLIASRKQDMHQLWTTCSYLIAKSGLPQEILAKHLPIELVAKIEELRLKSSMPLRSLMPHHHDLTSTLDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDESLALIYAVENCSREVVKALLELGAADVNYPAGPTGKTALHIAAEMVSPDMVAVLLDHHADPNVQTVDGITPLDILRTLTSDFLFKGAIPGLTHIEPNKLRLCLELVQSAALVISREEGNNNSNDNNTMIYPRMKDEHTSGSSLDSRLVYLNLGATNRDIGDDNSNQREGMNLHHHHHDPSTMYHHHHHHF", "sequence_length": 467, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "64f9a5a624dfde3dee6ec7be7dbeba385725e2cbf5b3928cb7919924b8481810", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M1I7.json", "taxon_id": "3702", "uniprot_accession": "Q9M1I7", "uniprot_release": "2026_03" } ], "pfam_id": "PF11900", "short_name": "DUF3420", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thalassophryne nattereri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dm9-pf11901.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11901", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dm9-pf11901.yaml" } ], "pfam_ids": [ "PF11901" ], "protein_name": "Natterin-4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLLVLLVTLLVLSWTSAEDVGDQEILQQHNEDNNHKSELGEAAPQRTDNETSQLGQETPTIRVARAYEFSSKSNLEWVRWNGHIPSNAVKISNTYVGREDYVCRVGCEAGYYTPKKGPSCFYPYGFTEQHSKMFHILVNRDNFEILEWKWKTGGEVPENAVKACRDLYVAKNKYGLGKLHQSHHVFYLPWKGTEYKYNEYYVLNVNMDVVEQKITNVRYNMKGVEVHKDKPETLRSTSVKNYQCREATKQVTLEKSTETSQSWDVSNSITLGVSTEVSAGIPNIADVSVAVSAETSVEISHGTSKTESTSHSLSVSATIPPNSSCSITMEGCTFKANIPFTGRLTRKYSNGKVTSSSVKGIYKKVQVGEIQAVLHRCDKIADAKPC", "sequence_length": 387, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e2cf59f11619d02dbeaae7b8e222c56746a9d247072168cd22a21e2744681ec1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q66S13.json", "taxon_id": "289382", "uniprot_accession": "Q66S13", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thalassophryne nattereri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dm9-pf11901.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11901", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dm9-pf11901.yaml" } ], "pfam_ids": [ "PF11901" ], "protein_name": "Natterin-3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLSVLVVTLLAVSWTSAQPETFSIQTKEANMNPEPANIRVARSSSAQSNLQWNYWDGQGAVPDGAVSIWNGEEKRTDYVCSCGCSSGFYSTKTGANCHYAYGETEKTCSGFSILVNRDNFENLEWKGGSDGSVPKNAVEVCEKVYVGKNKYGLGKVHTKHEALFLPWHGEEHWYKDYEVLTVNDDVVKQELTQVNYKLDAAHPIKNPPETLRRSSASNSQCRPITKTVALEKAIQTEQSWDVTSTVTFGVESSITAGIPDIASATVSVSVETSLSVSLGSTTTKTTTHTVSVIVTVPPNHYCPVTMVATKYTADIPFTGKMTRTYRNGQKRTTSITGTYRAIQVGEIRADVQRCSEIAGAKPC", "sequence_length": 364, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a2ed3b78c3a8f3531911bcdbfde7f14dbc2881a8bcaa7cf85de9c40d1642f59d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q66S17.json", "taxon_id": "289382", "uniprot_accession": "Q66S17", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thalassophryne nattereri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dm9-pf11901.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11901", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dm9-pf11901.yaml" } ], "pfam_ids": [ "PF11901" ], "protein_name": "Natterin-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIPSVLLVTLLLLSWTSAEKDLKVRVARSTNDETNLHWVKCGGSVPDGAVSIQNTYVSPARTEYVCKSNCEAGYYSTKDSKCHYPFGRVEQTTSVCEILVNRDNFELLEWKEGYAGSLPANAVSTCKTNRIYVGKGAYGLGKIEPAHHCLYYGWNGAETWTKTYQALTVNKDVIEQTMKDVKYQTEGVTVIQGKPEVMRKSTVNNKQCKEVTKTVTLSKDISTEERWDVTNSVTFGVTTTVTAGIPDVASASLAVSMEARRDFAHGASKTESQSYMVTVSVPVPPKQSCTVSMVAQVNKADVPFTATLIRTYRGGKKTQTTTKGVYRTTQVAETHADVEQCTIIGDEKDCPKASK", "sequence_length": 355, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c71066c147e05e19d26cc63e56ec12c22d9d7e2895931658422ade648e33773f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q66S25.json", "taxon_id": "289382", "uniprot_accession": "Q66S25", "uniprot_release": "2026_03" } ], "pfam_id": "PF11901", "short_name": "DM9", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11902", "short_name": "DUF3422", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11903", "short_name": "ParD_like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-anoikis-go2000209.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000209", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-anoikis-go2000209.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ankyrin-repeat-domain-containing-protein-13-c-terminal-ipr055285.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ankyrin-repeat-domain-containing-protein-13-c-terminal-ipr055285.yaml" } ], "pfam_ids": [ "PF11904", "PF12796" ], "protein_name": "Ankyrin repeat domain-containing protein 13C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGEKIRSLRRDHKPSKEDGDVLEPCEEEATAALGGAFTGGRSGPGGSGKGGKACHKIFSHHHRLQLKAPAVPGPGVPAPPQHNAVTATCPAPACLGGSNPALVADGGGCPSLYPVHECVFKGDVRRLSSLIRTHNIGQKDNHGNTPLHLAVMLGNKECAHLLLAHNAPVKVKNAQGWSPLAEAISYGDRQMITALLRKLKQQSRESVGEKRPRLLKALKELGDFYLELHWDFQSWVPLLSRILPSDACKIYKQGINIRLDTTLIDFTDMKCQRGDLSFIFNGDAAPSESFVVLDNEQKVYQRIHHEESEMETEEEVDILMSSDIYSATLSTKSISFTRAQTGWLFREDKTERVGNFLADFYLVNGLVLESRKRREHLSEEDILRNKAIMESLSKGGSLAEQSFEPVRRQSLTPPPQNTITWEEYISAENGKAPHLGRELVCKESKKTFKATVAMSQEFPLGIESLLNVLEVIAPFKHFNKLREFVQMKLPPGFPVKLDIPVFPTITATVTFQEFRCDEFDGSIFAIPEDYKEDPSRFPDL", "sequence_length": 541, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5ac1eabe3472cd4c153d1579257b7e061afb8deff45005e2ea080c3c854217a2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UX43.json", "taxon_id": "10090", "uniprot_accession": "Q3UX43", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ankyrin-repeat-domain-containing-protein-13-c-terminal-ipr055285.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ankyrin-repeat-domain-containing-protein-13-c-terminal-ipr055285.yaml" } ], "pfam_ids": [ "PF11904", "PF12796" ], "protein_name": "Ankyrin repeat domain-containing protein 13B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIPANASARKGPEGKYPLHYLVWHNRHRELEKEVRAGQVDIEQLDPRGRTPLHLATTLGHLECARVLLAHGADVGRENRSGWTVLQEAVSTRDLELVQLVLRYRDYQRVVKRLAGIPMLLEKLRKAQDFYVEMKWEFTSWVPLVSKICPSDTYKVWKSGQNLRVDTTLLGFDHMTWQRGNRSFVFRGQDTSAVVMEIDHDRRVVYMETLALAGQDRELLLAAAQPSEEQVLSRLTAPVVTTQLDTKNISFERNKTGILGWRSEKTEMVNGYEAKVYGASNVELITRTRTEHLSEQHKGKVKGCKTPLQSFLGIAEQHGGPQNGTLITQTLSQANPPAITAEEYFNPNFELGNRAMGRPMELTTKTQKFKAKLWLCEEHPLSLCEQVAPIIDLMAVSNALFAKLRDFITLRLPPGFPVKIEIPIFHILNARITFGNLNGCDEPVPSVRGSPGSETPSPGSDSSSVSSSSSTTSCRACEISPALFEAPRGYSVLGGQREAVPRDEDDDLLRFAIQQSLLEAGSEYDQVTIWEALTNSKPGTHPMSYEGRRQDRSAPPTPQRQPMPPAPVPSPRPSPGPGSSSHVFRSYDEQLRLAMELSAQEQEERRRRVRQEEEELERILRLSLTEQ", "sequence_length": 626, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f5ce46c6917abfbdd8f21003f9bded6aa7068ef6a47aefc3565c584a722fa53d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5F259.json", "taxon_id": "10090", "uniprot_accession": "Q5F259", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ankyrin-repeat-domain-containing-protein-13-c-terminal-ipr055285.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ankyrin-repeat-domain-containing-protein-13-c-terminal-ipr055285.yaml" } ], "pfam_ids": [ "PF11904", "PF12796" ], "protein_name": "Ankyrin repeat domain-containing protein 13D", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGLGPTFPLHRLVWANRHRELEAALHSRKHDIEQEDPQGRTPLELAVTLGNLESVRVLLRHNANVGKESHQGWAVLQEAVSTGDPEMVQLVLQYRDFQRATQRLAGIPELLNKLRQAPDFYVEMKWEFTSWVPLVSKMCPSDVYRVWKRGESLRVDTSLLGFEHMTWQRGRRSFIFRGQEAGALVMEVDHDRQVVHTETLAPALHEPEALLAAMRPSEEHVASRLTSPIVSTHLDTRNVAFERNKCGIWGWRSEKMESVSGYEAKVYSATNVELVTRTRTEHLSDQDKLRNKGGKTPFQSFLGMAQQHSSHTLAPVQQAASPTNPTAISAEEYFDPSFSLESRNIGRPIEMSSKVQRFKATLWLSEEHPLSLGDQVTPIIDLMAISNAHFAKLRDFITLRLPPGFPVKIEIPLFHVLNARITFSNLCGCDEPVSSVCVPNSSSAISASGSPFPCEVDPTVFEVPEGYSVLGAERSEPLRDEDDDLLQFAIQQSLLEAGTEAEQVTVWEALTNTRPGIHPPPRVTVFEEQLQLEQALQESLQLSTESRGPESPQKTPPSPAPPSFEEQLRLALELSSREQEELERRGQQEEDDLQRILQLSLTEH", "sequence_length": 605, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "07de91ba31be1ebfcd416dc4899c15cecce05ecc5f74c8511db665bd346e1e5d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PD24.json", "taxon_id": "10090", "uniprot_accession": "Q6PD24", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-receptor-mediated-endocytosis-go0048259.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0048259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-receptor-mediated-endocytosis-go0048259.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ankyrin-repeat-domain-containing-protein-13-c-terminal-ipr055285.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ankyrin-repeat-domain-containing-protein-13-c-terminal-ipr055285.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q6ZTN6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11904", "PF12796" ], "protein_name": "Ankyrin repeat domain-containing protein 13D", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f287231dcfe029107bb3c5a2b22162fbbe68343ea3f04f091d18134504e0f8fc", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAGPGPTFPLHRLVWANRHRELEAALHSHQHDIEQEDPRGRTPLELAVSLGNLESVRVLLRHNANVGKENRQGWAVLQEAVSTGDPEMVQLVLQYRDYQRATQRLAGIPELLNKLRQAPDFYVEMKWEFTSWVPLVSKMCPSDVYRVWKRGESLRVDTSLLGFEHMTWQRGRRSFIFKGQEAGALVMEVDHDRQVVHVETLGLTLQEPETLLAAMRPSEEHVASRLTSPIVSTHLDTRNVAFERNKCGIWGWRSEKMETVSGYEAKVYSATNVELVTRTRTEHLSDQDKSRSKAGKTPFQSFLGMAQQHSSHTGAPVQQAASPTNPTAISPEEYFDPNFSLESRNIGRPIEMSSKVQRFKATLWLSEEHPLSLGDQVTPIIDLMAISNAHFAKLRDFITLRLPPGFPVKIEIPLFHVLNARITFSNLCGCDEPLSSVWVPAPSSAVAASGNPFPCEVDPTVFEVPNGYSVLGMERNEPLRDEDDDLLQFAIQQSLLEAGTEAEQVTVWEALTNTRPGARPPPQATVYEEQLQLERALQESLQLSTEPRGPGSPPRTPPAPGPPSFEEQLRLALELSSREQEERERRGQQEEEDLQRILQLSLTEH", "sequence_length": 605, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f287231dcfe029107bb3c5a2b22162fbbe68343ea3f04f091d18134504e0f8fc", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZTN6.json", "taxon_id": "9606", "uniprot_accession": "Q6ZTN6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-protein-localization-to-endosome-go1905667.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905667", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-protein-localization-to-endosome-go1905667.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ankyrin-repeat-domain-containing-protein-13-c-terminal-ipr055285.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ankyrin-repeat-domain-containing-protein-13-c-terminal-ipr055285.yaml" } ], "pfam_ids": [ "PF11904", "PF12796" ], "protein_name": "Ankyrin repeat domain-containing protein 13A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSARDTSSRFPLHLLVWNNDYEQLEKELRDQNAEALDPRGRTLLHLAVSLGHLESARVLLRHKADVTKENGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSFIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMERLTLDLMKPKSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSVITRIRTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGDLATECATVNNPTAITPDEYFDEDFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLDFPPGFPVKIEIPLFHVLNARITFGNVNGCSTADESQGVEGTPAEAVSEATNFEVDQSVFEIPESYHIQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQDLSGPASNGGVSHTHSYEAQYERAIQESLLTNMEGRCPGGLSESSRFDSDLQLAMELSAKELAERELRLQEEEAELQQVLQLSLTEK", "sequence_length": 588, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ffb2237d030a56b7776f2232ae94a767f4a50175ca0f79e91e7b291b76bf8f7f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q80UP5.json", "taxon_id": "10090", "uniprot_accession": "Q80UP5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-receptor-mediated-endocytosis-go0048259.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0048259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-receptor-mediated-endocytosis-go0048259.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ankyrin-repeat-domain-containing-protein-13-c-terminal-ipr055285.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ankyrin-repeat-domain-containing-protein-13-c-terminal-ipr055285.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ankrd13-c-pf11904.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ankrd13-c-pf11904.yaml" } ], "pfam_ids": [ "PF11904", "PF12796" ], "protein_name": "Ankyrin repeat domain-containing protein 13B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIPANASARKGPEGKYPLHYLVWHNRHRELEKEVRAGQVDIEQLDPRGRTPLHLATTLGHLECARVLLAHGADVGRENRSGWTVLQEAVSTRDLELVQLVLRYRDYQRVVKRLAGIPVLLEKLRKAQDFYVEMKWEFTSWVPLVSKICPSDTYKVWKSGQNLRVDTTLLGFDHMTWQRGNRSFVFRGQDTSAVVMEIDHDRRVVYTETLALAGQDRELLLAAAQPTEEQVLSRLTAPVVTTQLDTKNISFERNKTGILGWRSEKTEMVNGYEAKVYGASNVELITRTRTEHLSEQHKGKVKGCKTPLQSFLGIAEQHGGPQNGTLITQTLSQANPTAITAEEYFNPNFELGNRDMGRPMELTTKTQKFKAKLWLCEEHPLSLCEQVAPIIDLMAVSNALFAKLRDFITLRLPPGFPVKIEIPIFHILNARITFGNLNGCDEPVPSVRGSPSSETPSPGSDSSSVSSSSSTTSCRGCEISPALFEAPRGYSMMGGQREAATRDDDDDLLQFAIQQSLLEAGSEYDQVTIWEALTNSKPGTHPMSYEGRRQDRSAPPTPQRQPAPPASVPSPRPSSGPGSGGHVFRSYDEQLRLAMELSAQEQEERRRRARQEEEELERILRLSLTEQ", "sequence_length": 626, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6cd7424aa2d647f7d43d88cb1cd2016db086a61de7411ece8f3dce563f2eb616", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q86YJ7.json", "taxon_id": "9606", "uniprot_accession": "Q86YJ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-protein-localization-to-endosome-go1905667.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905667", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-protein-localization-to-endosome-go1905667.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-receptor-mediated-endocytosis-go0048259.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0048259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-receptor-mediated-endocytosis-go0048259.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ankyrin-repeat-domain-containing-protein-13-c-terminal-ipr055285.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ankyrin-repeat-domain-containing-protein-13-c-terminal-ipr055285.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ankrd13-c-pf11904.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ankrd13-c-pf11904.yaml" } ], "pfam_ids": [ "PF11904", "PF12796" ], "protein_name": "Ankyrin repeat domain-containing protein 13A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSACDAGDHYPLHLLVWKNDYRQLEKELQGQNVEAVDPRGRTLLHLAVSLGHLESARVLLRHKADVTKENRQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLQKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSFIFKGEDNWAELMEVNHDDKVVTTERFDLSQEMERLTLDLMKPKSREVERRLTSPVINTSLDTKNIAFERTKSGFWGWRTDKAEVVNGYEAKVYTVNNVNVITKIRTEHLTEEEKKRYKADRNPLESLLGTVEHQFGAQGDLTTECATANNPTAITPDEYFNEEFDLKDRDIGRPKELTIRTQKFKAMLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLEFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEESVSQNVEGTQADSASHITNFEVDQSVFEIPESYYVQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQELSGPASNGGISQTNTYDAQYERAIQESLLTSTEGLCPSALSETSRFDNDLQLAMELSAKELEEWELRLQEEEAELQQVLQLSLTDK", "sequence_length": 590, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "227691917c64f6dfb7d7257002637b8225a6e5a6bda8648273a72c343e268601", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IZ07.json", "taxon_id": "9606", "uniprot_accession": "Q8IZ07", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cellular-response-to-prostaglandin-d-stimulus-go0071799.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071799", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cellular-response-to-prostaglandin-d-stimulus-go0071799.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-anoikis-go2000209.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000209", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-anoikis-go2000209.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ankyrin-repeat-domain-containing-protein-13-c-terminal-ipr055285.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ankyrin-repeat-domain-containing-protein-13-c-terminal-ipr055285.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ankrd13-c-pf11904.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ankrd13-c-pf11904.yaml" } ], "pfam_ids": [ "PF11904", "PF12796" ], "protein_name": "Ankyrin repeat domain-containing protein 13C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"MNPEKDFAPLTPNIVRALNDKLYEKRKVAALEIEKLVREFVAQNNTVQIKHVIQTLSQEFALSQHPHSRKGGLIGLAACSIALGKDSGLYLKELIEPVLTCFNDADSRLRYYACEALYNIVKVARGAVLPHFNVLFDGLSKLAADPDPNVKSGSELLDRLLKDIVTESNKFDLVSFIPLLRERIYSNNQYARQFIISWILVLESVPDINLLDYLPEILDGLFQILGDNGKEIRKMCEVVLGEFLKEIKKNPSSVKFAEMANILVIHCQTTDDLIQLTAMCWMREFIQLAGRVMLPYSSGILTAVLPCLAYDDRKKSIKEVANVCNQSLMKLVTPEDDELDELRPGQRQAEPTPDDALPKQEGTASGGPDGSCDSSFSSGISVFTAASTERAPVTLHLDGIVQVLNCHLSDTAIGMMTRIAVLKWLYHLYIKTPRKMFRHTDSLFPILLQTLSDESDEVILKDLEVLAEIASSPAGQTDDPGPLDGPDLQASHSELQVPTPGRAGLLNTSGTKGLECSPSTPTMNSYFYKFMINLLKRFSSERKLLEVRGPFIIRQLCLLLNAENIFHSMADILLREEDLKFASTMVHALNTILLTSTELFQLRNQLKDLKTLESQNLFCCLYRSWCHNPVTTVSLCFLTQNYRHAYDLIQKFGDLEVTVDFLAEVDKLVQLIECPIFTYLRLQLLDVKNNPYLIKALYGLLMLLPQSSAFQLLSHRLQCVPNPELLQTEDSLKAAPKSQKADSPSIDYAELLQHFEKVQNKHLEVRHQRSGRGDHLDRRVVL", "sequence_length": 782, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f27c50aeac629445c824e45fed2844ff6dd1de63baa47137911a4ab93cec014a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q08AM6.json", "taxon_id": "9606", "uniprot_accession": "Q08AM6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vacuolar-protein-14-c-terminal-fig4-binding-domain-ipr021841.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021841", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vacuolar-protein-14-c-terminal-fig4-binding-domain-ipr021841.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vac14-fig4-bd-pf11916.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11916", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vac14-fig4-bd-pf11916.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/vac14-fab1-bd-pf12755.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/vac14-fab1-bd-pf12755.yaml" } ], "pfam_ids": [ "PF11916", "PF12755" ], "protein_name": "Protein VAC14 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"8daf8b4a76fd62fdb5c5c68a9c9b369dce77827b0aa23d8c918daa71db732f95", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q80WQ2.json", "taxon_id": "10090", "uniprot_accession": "Q80WQ2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vacuolar-protein-14-c-terminal-fig4-binding-domain-ipr021841.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021841", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vacuolar-protein-14-c-terminal-fig4-binding-domain-ipr021841.yaml" }, { "cited_uniprot_accession": "", "commit": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/invasin-d3-pf09134.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/invasin-d4-pf21764.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21764", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/invasin-d4-pf21764.yaml" } ], "pfam_ids": [ "PF02369", "PF09134", "PF11924", "PF21764", "PF30549" ], "protein_name": "Inverse autotransporter adhesin YeeJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGIKLRRLTAGICLVTQLAFPMAAAAQGVVNAATPQPVPAQIAIANANTVPYILGALESAQSVAERFGISVAELRKLNQFRTFARGFDNVRQGDELDVPAQVSEKKLTPPPGNSSDNLEQQIASTSQQIGSLLAEDMNSEQAANMARGWASSQASGVMTDWLSRFGTARITLGVDEDFSLKNSQFDFLHPRYETPDNLFFSQHTLHRTDERTQINNGLGWRHFTPTWMSGINFFFDHDLSRYHSRAGIGAEYWRDYLKLSSNGYLRLTNWRSAPELDNDYEARPANGWDVRAEGWLPAWPHLGGKLVYEQYYGDEVALFDKDDRQSNPHAITAGLNYTPFPLMTFSAEQRQGKQGENDTRFAVDFTWQPGSAMQKQLDPNEVAARRSLAGSRYDLVDRNNNIVLEYRKKELVRLTLTDPVTGKSGEVKSLVSSLQTKYALKGYNVEATALEAAGGKVVTTGKDILVTLPGYRFTSTPETDNTWPIEVTAEDVKGNFSNREQSMVVVQAPALSQKDSSVSLSTQTLSADSHSTATLTFIAHDAAGNPVIGLVLSTRHEGVQDITLSDWKDNGDGSYTQVLTTGAMSGTLTLMPQLNGVDAAKAPAVVNIISVSSSRTHSSIKIDKDRYLSGNPIEVTVELRDENDKPVKEQKQQLNTAVSIDNVKPGVTTDWKETADGVYKATYTAYTKGSGLTAKLLMQNWNEDLHTAGFIIDANPQSAKIATLSASNNGVLANENAANTVSVNVADEGSNPINDHTVTFAVLNGSATSFNNQNTAKTDVNGLATFDLKSSKQEDNTVEVTLENGVKQTLIVSFVGDSSTAQVDLQKSKNEVVADGNDSATMTATVRDAKGNLLNDVKVTFNVNSAEAKLSQTEVNSHDGIATATLTSLKNGDYRVTASVSSGSQANQQVNFIGDQSTAALTLSVPSGDITVTNTAPQHMTATLQDKNGNPLKDKEITFTVPNDVASRFSISNGGKGMTDSNGVAIASLTGTLAGTHMITARLANSNVSDTQPMTFVADKDSAVVVLQTSKAEIIGNGVDETTLTATVKDPFDNVVKNLSVVFRTSPADTQLSLNTRNTNENGIAEVTLKGTVLGVHTAEAILLNGNRDTKTVNIAPDTSNAQVTLNIPAQQVVTNNSDSVQLTATVKDPSNHPVAGITVNFTMPQDVAANFTLENNGIAITQANGEAHVTLKGKKAGTHTVTATLGNNNASDAQPVTFVADKDSAVVVLQTSKAEIIGNGVDETTLTATVKDPFDNVVIDLPVTFSTNPADTQLSQSTSNTNDSGVAEVTLKGTVLGVHTAEATLPNGNNDTKTVNIAPDASNAQVTLNIPAQQVVTNNSDSVQLTATVKDPSNHPVAGITVNFTMPQDVAANFTLENNGIAITQANGEAHVTLKGKKAGTHTVTVTLSNNNTSDSQPVTFVADKTSAQVVLQISKNEITGNGVDSATLTATVKDQFDNEVNNLPVTFSTASSGLTLTPGESNTNESGIAQATLAGVAFGEQTVTASLANTGASDNKTVHFIGDTAAAKIIELTPVPDSIFAGTPQNSTGSVITATVVDNNGFPVKGVTVNFTSRTNSAEMTNGGQAVTNEQGKATVTYTNTRSSIESGARPDTVEASLENGSSTLSTSINVNADASTAHLTLLHALFDTVSAGETTSLYIEVKDNYGNGVPQHQVTLSVSPSEGVTPSNNGIYTTNYYGNFYASFTATKAGVYQVTATLENGDSMQQTVTYVPNVANAEISLAASKDPVIADNNDLTTLTATVADTEGNAIANTEVTFTLPEDVRANFTLSDGGKAITDTEGKAKVTLKGTKAGAHTVTASMAGGKSGQLVVNFTADTLTAQVNLNVTEDNFIANNVGMTTLQATVTDGNGNPLANEAVTFTLPADVSASFTLGQGGSAITDINGKAEVTLSGTKSGTYPVTVSVNNYGVSDTKQVTLIADAGTAKLTSLTSVYSFVVSTTEGATMTASVTDANGNPVEGIKVNFRGTSVTLSSTSVETDSQGFAEILVTSTEVGLKTVSASLADKPTEVISRLLNASADVNSATFTSLEIPEGQVMVAQDVAVKAHVNDQFGNPVAHQPVTFSAEPSSQMIISQNTVSTNTQGIAEVTMTPERNGSYMVKASLANGASIEKQLEAIDEKLTLTASSPLIGVNSPTGATLTATLTSANGTPVEGQVINFSVTPEGATLSGGKVRTNSSGQAPVVLTSNKVGTYTVTASFHNGVTIQTQTTVKVTGNSSTAHVASFIADPSTIAATNSDLSTLKATVEDGSGNLIEGLTVYFALKSGSATLTTLTAVTDQNGIATTSVKGAMTGSVTVSAVTTAGGMQTVDITLVAGPADASQSVLKNNRSSLKGDYTDSAELHLVLYDISGNPIKVSEGMEFVQSGTNVPYVKISAIDYSQNINGDYKATVTGGGEGIATLIPVLNGVHQAGLSTTIQFTRAEDKIMSGTVLVNGANLPTTTFPSQGFTGAYYQLNNDNFAPGKTAADYEFSSSGSWVDVDATGKVTFKNVGSKWERITATPKTGGPSYIYEIRVKSWWVNAGDAFMIYSLAENFCSSNGYTLPLGDHLNHSRSRGIGSLYSEWGDMGHYTTEAGFQSNMYWSSSPANSSEQYVISLATGEQSVYEKLGFAHATCYKNL", "sequence_length": 2641, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "97ba790f6dc7119787b281a7a22b902f62a02e29bbad8f8b9b6afd2bf584290c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/B7NC15.json", "taxon_id": "585056", "uniprot_accession": "B7NC15", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O111:H-", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-eae-pf26918.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26918", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-eae-pf26918.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/intimin-c-pf07979.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/intimin-c-pf07979.yaml" } ], "pfam_ids": [ "PF01476", "PF02369", "PF07979", "PF11924", "PF26918", "PF30549" ], "protein_name": "Intimin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MITHGFYARTRHKHKLKKTFIMLSAGLGLFFYVNQNSFANGENYFKLSSDSKLLTQNVAQDRLFYTLKTGETVSSISKSQGISLSVIWSLNKHLYSSESEMLKAAPGQQIILPLKKLSVEYGALPVLGSAPVVAAGGVAGHTNKMTKMSPDATQSNMTDDRALNYTAQQAASLGSQLQSRSLHGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLMYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGYENDLLYSMQFRYQFDKPWSPQIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTEHSTQKIQLIVKSKYGLDRIVWDDSALRSQGGQIQHSGSQSAQDYQAILPAYVQGGSNIYKVTARAYDRNGNSSNNVQLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVTQANVPVSFNIVSGTATLGANSATTDANGKATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFVEQTKASITEIKADKTTAVANGNDAVTYTVKVMKEGQPVHGHSVAFTTNFGMFNGKSQTQNATTGSDGRATITLTSSSAGKATVSATVSGGNDVKAPEVTFFDGLKIDNKVDILGKNVTGDLPNIWLQYGQFKLKVSGGNGTYSWHSENTNIATVDESGKVTLKGKGTAVINVTSGDKQTVSYTIKAPNYMIRVGNKASYANAMSFCGNLLPSSQTVLSNVYNSWGPANGYDHYRSMQSITAWITQTEADKISGVSTTYDLITQNPHKDVSLNAPNVYAVCVE", "sequence_length": 935, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c69d1025d4bc73ddf4825830b41089573e84cb5e87301bc5eb5ba86d0370a254", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31000.json", "taxon_id": "168927", "uniprot_accession": "O31000", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Yersinia pseudotuberculosis serotype I (strain IP32953)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/invasin-d3-pf09134.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09134", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/invasin-d3-pf09134.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/invasin-d4-pf21764.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21764", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/invasin-d4-pf21764.yaml" } ], "pfam_ids": [ "PF02369", "PF07979", "PF09134", "PF11924", "PF21764", "PF30549" ], "protein_name": "Invasin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVFQPISEFLLIRNAGMSMYFNKIISFNIISRIVICIFLICGMFMAGASEKYDANAPQQVQPYSVSSSAFENLHPNNEMESSINPFSASDTERNAAIIDRANKEQETEAVNKMISTGARLAASGRASDVAHSMVGDAVNQEIKQWLNRFGTAQVNLNFDKNFSLKESSLDWLAPWYDSASFLFFSQLGIRNKDSRNTLNLGVGIRTLENGWLYGLNTFYDNDLTGHNHRIGLGAEAWTDYLQLAANGYFRLNGWHSSRDFSDYKERPATGGDLRANAYLPALPQLGGKLMYEQYTGERVALFGKDNLQRNPYAVTAGINYTPVPLLTVGVDQRMGKSSKHETQWNLQMNYRLGESFQSQLSPSAVAGTRLLAESRYNLVDRNNNIVLEYQKQQVVKLTLSPATISGLPGQVYQVNAQVQGASAVREIVWSDAELIAAGGTLTPLSTTQFNLVLPPYKRTAQVSRVTDDLTANFYSLSALAVDHQGNRSNSFTLSVTVQQPQLTLTAAVIGDGAPANGKTAITVEFTVADFEGKPLAGQEVVITTNNGALPNKITEKTDANGVARIALTNTTDGVTVVTAEVEGQRQSVDTHFVKGTIAADKSTLAAVPTSIIADGLMASTITLELKDTYGDPQAGANVAFDTTLGNMGVITDHNDGTYSAPLTSTTLGVATVTVKVDGAAFSVPSVTVNFTADPIPDAGRSSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQNGVPVSISPITEQPDSYTATVVGNTAGDVTITPQVDTLILSTLQKKISLFPVPTLTGILVNGQNFATDKGFPKTIFKNATFQLQMDNDVANNTQYEWSSSFTPNVSVNDQGQVTITYQTYSEVAVTAKSKKFPSYSVSYRFYPNRWIYDGGTSLVSSLEASRQCQGSDMSAVLESSRATNGTRAPDGTLWGEWGSLTAYSSDWQSGEYWVKKTSTDFETMNMDTGALVQGPAYLAFPLCALAI", "sequence_length": 985, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1f1ef949d9fbb18c51db154dc0457325ca1be188ec9df5c06339395f658b5d78", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P11922.json", "taxon_id": "273123", "uniprot_accession": "P11922", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O127:H6 (strain E2348/69 / EPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/big-1-pf02369.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02369", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/big-1-pf02369.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/iat-beta-pf11924.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11924", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/iat-beta-pf11924.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-eae-pf26918.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26918", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-eae-pf26918.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/intimin-c-pf07979.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/intimin-c-pf07979.yaml" } ], "pfam_ids": [ "PF01476", "PF02369", "PF07979", "PF11924", "PF26918", "PF30549" ], "protein_name": "Intimin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MITHGFYARTRHKHKLKKTFIMLSAGLGLFFYVNQNSFANGENYFKLGSDSKLLTHNSYQNRLFYTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKAAPGQQIILPLKKLPFEYSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYAAQQAASLGSQLQSRSLNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLMYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKPWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTERSTQKIQLIVKSKYGLDRIVWDDSALRSQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQTATYTIATPNSLIVPNMSKRVTYNDAVNTCKNFGGKLPSSQNELENVFKAWGAANKYEYYKSSQTIISWVQQTAQDAKSGVASTYDLVKQNPLNNIKASESNAYATCVK", "sequence_length": 939, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "29cf398a153e2820d2999df379fc250db35cb04ca7cc2eea953e71716002d7b7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P19809.json", "taxon_id": "574521", "uniprot_accession": "P19809", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/inverse-autotransporter-beta-domain-ipr024519.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024519", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/inverse-autotransporter-beta-domain-ipr024519.yaml" }, { "cited_uniprot_accession": "", 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"commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/intimin-c-pf07979.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/intimin-c-pf07979.yaml" } ], "pfam_ids": [ "PF01476", "PF02369", "PF07979", "PF11924", "PF26918", "PF30549" ], "protein_name": "Intimin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"PF11924", "PF21764", "PF30549" ], "protein_name": "Inverse autotransporter adhesin YeeJ", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f7809be4e5c167af4ccdd013f20853b1689ce41a7661b54cbc38fef11632bc34", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-embryo-sac-egg-cell-differentiation-go0045694.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0045694", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-embryo-sac-egg-cell-differentiation-go0045694.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/sde2-sf3a3-sap-domain-ipr025086.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025086", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sde2-sf3a3-sap-domain-ipr025086.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/sf3a3-domain-ipr031774.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031774", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sf3a3-domain-ipr031774.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/splicing-factor-sf3a60-binding-domain-ipr021966.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021966", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/splicing-factor-sf3a60-binding-domain-ipr021966.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/splicing-factor-sf3a60-prp9-subunit-c-terminal-ipr024598.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024598", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/splicing-factor-sf3a60-prp9-subunit-c-terminal-ipr024598.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sde2-2c-pf13297.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sde2-2c-pf13297.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sf3a3-pf16837.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16837", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sf3a3-pf16837.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sf3a60-bindingd-pf12108.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12108", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sf3a60-bindingd-pf12108.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sf3a60-prp9-c-pf11931.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11931", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sf3a60-prp9-c-pf11931.yaml" } ], "pfam_ids": [ "PF11931", "PF12108", "PF13297", "PF16837" ], "protein_name": "Splicing factor SF3a60 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSTLLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVETYEDKDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYHKRHPSGRLVDANEDYEARLKEEPIIAFSGEEGNGRYLDLHDMYNQYINSKFGERVEYSAYLDVFSQPEKIPRKLKLSRQYMKYMEALLEYLVYFFQRTEPLQDLDRILSKVCSDFEEQYADGIVEGLDNELIPSQHTVIDLDYYSTVEELVDVGPEKLKEALGALGLKVGGTPQQRAERLFLTKHTPLEKLDKKHFARPPHNGKQNGDAKSTHESENAKEIALTEAKVKKLCNLLDETIERTKQNIVKKQSLTYEEMEGEREGEEANTELESDDEDGLIYNPLKLPIGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKRIQERQGVNKWRPELEEEYEDREGNIYNKKTYSDLQRQGLI", "sequence_length": 504, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "322b716b374630a2a4f0a95cd5aeccd8e6cec946683eab0fb99379f9b0cd5336", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FG01.json", "taxon_id": "3702", "uniprot_accession": "Q9FG01", "uniprot_release": "2026_03" } ], "pfam_id": "PF11931", "short_name": "SF3a60_Prp9_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11932", "short_name": "DUF3450", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/na-trans-cytopl-pf11933.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/na-trans-cytopl-pf11933.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A2APX8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00520", "PF06512", "PF11933", "PF24609" ], "protein_name": "Sodium channel protein type 1 subunit alpha", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1e37033591504895b3c3e0664a9a8da3332c32b5b92718c941a66e1f5ad3d097", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKNLPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKIAIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCLEDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQWPPTNASLEEHSIEKNITMDYNGTLVNETVFEFDWKSYIQDSRYHYFLEGVLDALLCGNSSDAGQCPEGYMCVKAGRNPNYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQQAAATTASEHSREPSAAGRLSDSSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDDDEFHKSESEDSIRRKGFRFSIEGNRLTYEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFEDNESRRDSLFVPRRHGERRNSNLSQTSRSSRMLAVFPANGKMHSTVDCNGVVSLVGGPSVPTSPVGQLLPEVIIDKPATDDNGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASILTNTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHIVNLVVMDPFVDLAITICIVLNTLFMAMEHYPMTEHFNHVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVTLSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKIATDCKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMHKGIAYVKRKIYEFIQQSFVKKQKILDEIKPLDDLNNRKDNCISNHTTEIGKDLDCLKDVNGTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEESKEKLNESSSSSEGSTVDIGAPAEEQPVIEPEETLEPEACFTEGCVQRFKCCQISVEEGRGKQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTTTGDIFEISEVNNHSDCLKLIERNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYAAVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMVETDDQSDYVTSILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMFLAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPDCDPNKVNPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSAVIIQRAYRRHLLKRTVKQASFTYNKNKLKGGANLLVKEDMLIDRINENSITEKTDLTMSTAACPPSYDRVTKPIVEKHEQEGKDEKAKGK", "sequence_length": 2009, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "1e37033591504895b3c3e0664a9a8da3332c32b5b92718c941a66e1f5ad3d097", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2APX8.json", "taxon_id": "10090", "uniprot_accession": "A2APX8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/na-trans-cytopl-pf11933.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/na-trans-cytopl-pf11933.yaml" } ], "pfam_ids": [ "PF00520", "PF06512", "PF11933", "PF24609" ], "protein_name": "Sodium channel protein type 2 subunit alpha", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQSVLVPPGPDSFRFFTRESLAAIEQRIAEEKAKRPKQERKDEDDENGPKPNSDLEAGKSLPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAISRFSATSALYILTPFNPIRKLAIKILVHSLFNVLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFCLEDFTFLRDPWNWLDFTVITFAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPDNSTFEINITSFFNNSLDWNGTAFNRTMNMFNWDEYIEDKSHFYFLEGQNDALLCGNSSDAGQCPEGYICVKAGRNPNYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAASAESRDFSGAGGIGVFSESSSVASKLSSKSEKELKNRRKKKKQKEQAGEEEKEDAVRKSASEDSIRKKGFRFSLEGSRLTYEKRFSSPHQSLLSIRGSLFSPRRNSRASLFSFKGRVKDIGSENDFADDEHSTFEDNDSRRDSLFVPHRHGERRPSNVSQASRASRGIPTLPMNGKMHSAVDCNGVVSLVGGPSALTSPVGQLLPEGTTTETEIRKRRSSSYHVSMDLLEDPTSRQRAMSMASILTNTMEELEESRQKCPPCWYKFANMCLIWDCCKPWLKVKHVVNLVVMDPFVDLAITICIVLNTLFMAMEHYPMTEQFSSVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVSLSLMELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKISNDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLTVFMMVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVGRMQKGIDFVKRKIREFIQKAFVRKQKALDEIKPLEDLNNKKDSCISNHTTIEIGKDLNYLKDGNGTTSGIGSSVEKYVVDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEFSSESDMEESKEKLNATSSSEGSTVDIGAPAEGEQPEAEPEESLEPEACFTEDCVRKFKCCQISIEEGKGKLWWNLRKTCYKIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGFQMYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINYTTGEMFDVSVVNNYSECQALIESNQTARWKNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSRNVELQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPANKFQGMVFDFVTKQVFDISIMILICLNMVTMMVETDDQSQEMTNILYWINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMFLAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPDCDPEKDHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYEPITTTLKRKQEEVSAIVIQRAYRRYLLKQKVKKVSSIYKKDKGKEDEGTPIKEDIITDKLNENSTPEKTDVTPSTTSPPSYDSVTKPEKEKFEKDKSEKEDKGKDIRESKK", "sequence_length": 2006, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2cf2b6b61354ae79a1713896e337751774b7f10d3f5208a4653dc6bd2e9882ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B1AWN6.json", "taxon_id": "10090", "uniprot_accession": "B1AWN6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/na-trans-cytopl-pf11933.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/na-trans-cytopl-pf11933.yaml" } ], "pfam_ids": [ "PF00520", "PF06512", "PF11933", "PF24609" ], "protein_name": "Sodium channel protein para", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERKRAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPYYSNVLTFVVVSKGKDIFRFSASKAMWMLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDEGISFPLCGNISGAGQCDDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNTRNQSVGATNGGTTCLDTNHKLDHRDYEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTFKDKALEVILKGIDVFCVWDCCWVWLKFQEWVSLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLMAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGERTNQISWIWSEGKGVCRCISAEHGDNELELGHDEILADGLIKKGIKEQTQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARGEGGGSFEPDTDHGDGGDPDAGDPAPDEATDGDAPAGGDGSVNGTAEGAADADESNVNSPGEDAAAAAAAAAAAAAAGTTTAGSPGAGSAGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV", "sequence_length": 2131, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "192c76321d7941f14fcc3161ef2b5afb22edf0fe0787954293d02d3202c4abb6", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P35500.json", "taxon_id": "7227", "uniprot_accession": "P35500", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/iq-scn5a-c-pf24609.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24609", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/iq-scn5a-c-pf24609.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/na-trans-cytopl-pf11933.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/na-trans-cytopl-pf11933.yaml" } ], "pfam_ids": [ "PF00520", "PF06512", "PF11933", "PF24609" ], "protein_name": "Sodium channel protein type 5 subunit alpha", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANFLLPRGTSSFRRFTRESLAAIEKRMAEKQARGSTTLQESREGLPEEEAPRPQLDLQASKKLPDLYGNPPQELIGEPLEDLDPFYSTQKTFIVLNKGKTIFRFSATNALYVLSPFHPIRRAAVKILVHSLFNMLIMCTILTNCVFMAQHDPPPWTKYVEYTFTAIYTFESLVKILARGFCLHAFTFLRDPWNWLDFSVIIMAYTTEFVDLGNVSALRTFRVLRALKTISVISGLKTIVGALIQSVKKLADVMVLTVFCLSVFALIGLQLFMGNLRHKCVRNFTALNGTNGSVEADGLVWESLDLYLSDPENYLLKNGTSDVLLCGNSSDAGTCPEGYRCLKAGENPDHGYTSFDSFAWAFLALFRLMTQDCWERLYQQTLRSAGKIYMIFFMLVIFLGSFYLVNLILAVVAMAYEEQNQATIAETEEKEKRFQEAMEMLKKEHEALTIRGVDTVSRSSLEMSPLAPVNSHERRSKRRKRMSSGTEECGEDRLPKSDSEDGPRAMNHLSLTRGLSRTSMKPRSSRGSIFTFRRRDLGSEADFADDENSTAGESESHHTSLLVPWPLRRTSAQGQPSPGTSAPGHALHGKKNSTVDCNGVVSLLGAGDPEATSPGSHLLRPVMLEHPPDTTTPSEEPGGPQMLTSQAPCVDGFEEPGARQRALSAVSVLTSALEELEESRHKCPPCWNRLAQRYLIWECCPLWMSIKQGVKLVVMDPFTDLTITMCIVLNTLFMALEHYNMTSEFEEMLQVGNLVFTGIFTAEMTFKIIALDPYYYFQQGWNIFDSIIVILSLMELGLSRMSNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYSELRDSDSGLLPRWHMMDFFHAFLIIFRILCGEWIETMWDCMEVSGQSLCLLVFLLVMVIGNLVVLNLFLALLLSSFSADNLTAPDEDREMNNLQLALARIQRGLRFVKRTTWDFCCGLLRQRPQKPAALAAQGQLPSCIATPYSPPPPETEKVPPTRKETRFEEGEQPGQGTPGDPEPVCVPIAVAESDTDDQEEDEENSLGTEEESSKQQESQPVSGGPEAPPDSRTWSQVSATASSEAEASASQADWRQQWKAEPQAPGCGETPEDSCSEGSTADMTNTAELLEQIPDLGQDVKDPEDCFTEGCVRRCPCCAVDTTQAPGKVWWRLRKTCYHIVEHSWFETFIIFMILLSSGALAFEDIYLEERKTIKVLLEYADKMFTYVFVLEMLLKWVAYGFKKYFTNAWCWLDFLIVDVSLVSLVANTLGFAEMGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFGRCINQTEGDLPLNYTIVNNKSQCESLNLTGELYWTKVKVNFDNVGAGYLALLQVATFKGWMDIMYAAVDSRGYEEQPQWEYNLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKYQGFIFDIVTKQAFDVTIMFLICLNMVTMMVETDDQSPEKINILAKINLLFVAIFTGECIVKLAALRHYYFTNSWNIFDFVVVILSIVGTVLSDIIQKYFFSPTLFRVIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFAYVKWEAGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSPILNTGPPYCDPTLPNSNGSRGDCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEYSVLSDFADALSEPLRIAKPNQISLINMDLPMVSGDRIHCMDILFAFTKRVLGESGEMDALKIQMEEKFMAANPSKISYEPITTTLRRKHEEVSAMVIQRAFRRHLLQRSLKHASFLFRQQAGSGLSEEDAPEREGLIAYVMSENFSRPLGPPSSSSISSTSFPPSYDSVTRATSDNLQVRGSDYSHSEDLADFPPSPDRDRESIV", "sequence_length": 2016, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3b1719ba4947964cb94b865175fff405120a047e44643495f0965aa8178f7f49", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q14524.json", "taxon_id": "9606", "uniprot_accession": "Q14524", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/na-trans-cytopl-pf11933.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/na-trans-cytopl-pf11933.yaml" } ], "pfam_ids": [ "PF00520", "PF06512", "PF11933", "PF24609" ], "protein_name": "Sodium channel protein type 9 subunit alpha", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAMLPPPGPQSFVHFTKQSLALIEQRISEEKAKGHKDEKKDDEEEGPKPSSDLEAGKQLPFIYGDIPPGMVSEPLEDLDPYYADKKTFIVLNKGKAIFRFNATPALYMLSPFSPLRRISIKILVHSLFSMLIMCTILTNCIFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFCVGEFTFLRDPWNWLDFVVIVFAYLTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCFRKDLEQNETLESIMSTAESEEELKRYFYYLEGSKDALLCGFSTDSGQCPEGYECVTAGRNPDYGYTSFDTFGWAFLALFRLMTQDYWENLYQQTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKQKELEFQQMLDRLKKEQEEAEAIAAAAAEYTSLGRSRIMGLSESSSETSRLSSKSAKERRNRRKKKKQKLSSGEEKGDDEKLSKSGSEESIRKKSFHLGVEGHHRAREKRLSTPNQSPLSIRGSLFSARRSSRTSLFSFKGRGRDLGSETEFADDEHSIFGDNESRRGSLFVPHRPRERRSSNISQASRSPPVLPVNGKMHSAVDCNGVVSLVDGPSALMLPNGQLLPEVIIDKATSDDSGTTNQMRKKRLSSSYFLSEDMLNDPHLRQRAMSRASILTNTVEELEESRQKCPPWWYRFAHTFLIWNCSPYWIKFKKFIYFIVMDPFVDLAITICIVLNTLFMAMEHHPMTDEFKNVLAVGNLVFTGIFAAEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINENCKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLIVYMMVMVIGNLVVLNLFLALLLSSFSSDNLTAIEEDTDANNLQIAVARIKRGINYVKQTLREFILKSFSKKPKGSKDTKRTADPNNKRENYISNRTLAEISKDHNFLKEKDKISGFSSSLDKSFMDENDYQSFIHNPSLTVTVPIAPGESDLENMNTEELSSDSDSDYSKERRNRSSSSECSTVDNPLPGEEEAEAEPINADEPEACFTDGCVRRFPCCQVNIDSGKGKVWWTIRKTCYRIVEHSWFESFIVLMILLSSGALAFEDIYIEKKKTIKIILEYADKIFTYIFILEMLLKWVAYGYKTYFTNAWCWLDFLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYECVNTTDGSRFSVSQVANRSECFALMNVSGNVRWKNLKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSVNVNAQPIYEYNLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGCIFDLVTNQAFDITIMVLICLNMVTMMVEKEGQTDYMSFVLYWINVVFIILFTGECVLKLISLRHYYFTVGWNIFDFVVVILSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGINDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSAPPDCDPKKVHPGSSVEGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTEPLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVSATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATASTISPPSYDSVTKPDQEKYETDKTEKEDKEKDESRK", "sequence_length": 1984, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2c317d12435243ba4c435f26f96ee7e2ced57e60c887e3377f8e38c4c4acd1cb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q62205.json", "taxon_id": "10090", "uniprot_accession": "Q62205", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/na-trans-cytopl-pf11933.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/na-trans-cytopl-pf11933.yaml" } ], "pfam_ids": [ "PF00520", "PF06512", "PF11933", "PF24609" ], "protein_name": "Sodium channel protein type 5 subunit alpha", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANFLLPRGTSSFRRFTRESLAAIEKRMAEKQARGSATSQESREGLPEEEAPRPQLDLQASKKLPDLYGNPPRELIGEPLEDLDPFYSTQKTFIVLNKGKTIFRFSATNALYVLSPFHPVRRAAVKILVHSLFSMLIMCTILTNCVFMAQHDPPPWTKYVEYTFTAIYTFESLVKILARGFCLHAFTFLRDPWNWLDFSVIVMAYTTEFVDLGNVSALRTFRVLRALKTISVISGLKTIVGALIQSVKKLADVMVLTVFCLSVFALIGLQLFMGNLRHKCVRNFTELNGTNGSVEADGIVWNSLDVYLNDPANYLLKNGTTDVLLCGNSSDAGTCPEGYRCLKAGENPDHGYTSFDSFAWAFLALFRLMTQDCWERLYQQTLRSAGKIYMIFFMLVIFLGSFYLVNLILAVVAMAYEEQNQATIAETEEKEKRFQEAMEMLKKEHEALTIRGVDTVSRSSLEMSPLAPVTNHERRSKRRKRLSSGTEDGGDDRLPKSDSEDGPRALNQLSLTHGLSRTSMRPRSSRGSIFTFRRRDQGSEADFADDENSTAGESESHRTSLLVPWPLRRPSTQGQPGFGTSAPGHVLNGKRNSTVDCNGVVSLLGAGDAEATSPGSHLLRPIVLDRPPDTTTPSEEPGGPQMLTPQAPCADGFEEPGARQRALSAVSVLTSALEELEESHRKCPPCWNRFAQHYLIWECCPLWMSIKQKVKFVVMDPFADLTITMCIVLNTLFMALEHYNMTAEFEEMLQVGNLVFTGIFTAEMTFKIIALDPYYYFQQGWNIFDSIIVILSLMELGLSRMGNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYSELRHRISDSGLLPRWHMMDFFHAFLIIFRILCGEWIETMWDCMEVSGQSLCLLVFLLVMVIGNLVVLNLFLALLLSSFSADNLTAPDEDGEMNNLQLALARIQRGLRFVKRTTWDFCCGLLRRRPKKPAALATHSQLPSCIAAPRSPPPPEVEKAPPARKETRFEEDKRPGQGTPGDTEPVCVPIAVAESDTDDQEEDEENSLGTEEEESSKQESQVVSGGHEPPQEPRAWSQVSETTSSEAEASTSQADWQQEREAEPRAPGCGETPEDSYSEGSTADMTNTADLLEQIPDLGEDVKDPEDCFTEGCVRRCPCCMVDTTQAPGKVWWRLRKTCYRIVEHSWFETFIIFMILLSSGALAFEDIYLEERKTIKVLLEYADKMFTYVFVLEMLLKWVAYGFKKYFTNAWCWLDFLIVDVSLVSLVANTLGFAEMGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFGRCINQTEGDLPLNYTIVNNKSECESFNVTGELYWTKVKVNFDNVGAGYLALLQVATFKGWMDIMYAAVDSRGYEEQPQWEDNLYMYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKYQGFIFDIVTKQAFDVTIMFLICLNMVTMMVETDDQSPEKVNILAKINLLFVAIFTGECIVKMAALRHYYFTNSWNIFDFVVVILSIVGTVLSDIIQKYFFSPTLFRVIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFAYVKWEAGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSPILNTGPPYCDPNLPNSNGSRGNCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEYLALSDFADALSEPLRIAKPNQISLINMDLPMVSGDRIHCMDILFAFTKRVLGESGEMDALKIQMEEKFMAANPSKISYEPITTTLRRKHEEVSATVIQRAFRRHLLQRSVKHASFLFRQQAGSSGLSDEDAPEREGLIAYMMNENFSRRSGPLSSSSISSTSFPPSYDSVTRATSDNLPVRASDYSRSEDLADFPPSPDRDRESIV", "sequence_length": 2019, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "670eefb9162c3c26eb9787e1cf82c6b6c79a4b160c55d90930f5a78ffc704a83", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JJV9.json", "taxon_id": "10090", "uniprot_accession": "Q9JJV9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/na-trans-cytopl-pf11933.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/na-trans-cytopl-pf11933.yaml" } ], "pfam_ids": [ "PF00520", "PF06512", "PF11933", "PF24609" ], "protein_name": "Sodium channel protein type 8 subunit alpha", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAARLLAPPGPDSFKPFTPESLANIERRIAESKLKKPPKADGSHREDDEDSKPKPNSDLEAGKSLPFIYGDIPQGLVAVPLEDFDPYYLTQKTFVVLNRGKTLFRFSATPALYILSPFNLIRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPDWSKNVEYTFTGIYTFESLVKIIARGFCIDGFTFLRDPWNWLDFSVIMMAYITEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVVWPINFNESYLENGTKGFDWEEYINNKTNFYTVPGMLEPLLCGNSSDAGQCPEGYQCMKAGRNPNYGYTSFDTFSWAFLALFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQATLEEAEQKEAEFKAMLEQLKKQQEEAQAAAMATSAGTVSEDAIEEEGEEGGGSPRSSSEISKLSSKSAKERRNRRKKRKQKELSEGEEKGDPEKVFKSESEDGMRRKAFRLPDNRIGRKFSIMNQSLLSIPGSPFLSRHNSKSSIFSFRGPGRFRDPGSENEFADDEHSTVEESEGRRDSLFIPIRARERRSSYSGYSGYSQGSRSSRIFPSLRRSVKRNSTVDCNGVVSLIGGPGSHIGGRLLPEATTEVEIKKKGPGSLLVSMDQLASYGRKDRINSIMSVVTNTLVEELEESQRKCPPCWYKFANTFLIWECHPYWIKLKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHHPMTPQFEHVLAVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMELSLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINQDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGVAWTKLKVHAFMQAHFKQREADEVKPLDELYEKKANCIANHTGADIHRNGDFQKNGNGTTSGIGSSVEKYIIDEDHMSFINNPNLTVRVPIAVGESDFENLNTEDVSSESDPEGSKDKLDDTSSSEGSTIDIKPEVEEVPVEQPEEYLDPDACFTEGCVQRFKCCQVNIEEGLGKSWWILRKTCFLIVEHNWFETFIIFMILLSSGALAFEDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWTAYGFVKFFTNAWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETSEIRFEIEDVNNKTECEKLMEGNNTEIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKPDEQPKYEDNIYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKIQGIVFDFVTQQAFDIVIMMLICLNMVTMMVETDTQSKQMENILYWINLVFVIFFTCECVLKMFALRHYYFTIGWNIFDFVVVILSIVGMFLADIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKHEAGIDDMFNFETFGNSMICLFQITTSAGWDGLLLPILNRPPDCSLDKEHPGSGFKGDCGNPSVGIFFFVSYIIISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPDATQFIEYCKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFTKRVLGDSGELDILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVLQRAYRGHLARRGFICKKTTSNKLENGGTHREKKESTPSTASLPSYDSVTKPEKEKQQRAEEGRRERAKRQKEVRESKC", "sequence_length": 1980, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "48b7226dc34e609ce66665fa7364fb3124108ada1effd7c7ef61ca7ca51b1974", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UQD0.json", "taxon_id": "9606", "uniprot_accession": "Q9UQD0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/na-trans-cytopl-pf11933.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/na-trans-cytopl-pf11933.yaml" } ], "pfam_ids": [ "PF00520", "PF06512", "PF11933", "PF24609" ], "protein_name": "Sodium channel protein type 8 subunit alpha", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAARVLAPPGPDSFKPFTPESLANIERRIAESKLKKPPKADGSHREDDEDSKPKPNSDLEAGKSLPFIYGDIPQGLVAVPLEDFDPYYLTQKTFVVLNRGKTLFRFSATPALYILSPFNLIRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKIIARGFCIDGFTFLRDPWNWLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVVWPINFNESYLENGTRGFDWEEYINNKTNFYMVPGMLEPLLCGNSSDAGQCPEGFQCMKAGRNPNYGYTSFDTFSWAFLALFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQATLEEAEQKEAEFKAMLEQLKKQQEEAQAAAMATSAGTVSEDAIEEEGEDGVGSPRSSSELSKLSSKSAKERRNRRKKRKQKELSEGEEKGDPEKVFKSESEDGMRRKAFRLPDNRIGRKFSIMNQSLLSIPGSPFLSRHNSKSSIFSFRGPGRFRDPGSENEFADDEHSTVEESEGRRDSLFIPIRARERRSSYSGYSGYSQCSRSSRIFPSLRRSVKRNSTVDCNGVVSLIGPGSHIGRLLPEATTEVEIKKKGPGSLLVSMEQLASYGRKDRINSIMSVVTNTLVEELEESQRKCPPCWYKFANTFLIWECHPYWIKLKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHHPMTPQFEHVLAVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKISQECKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGVAWAKVKVHAFMQAHFKQREADEVKPLDELYEKKANCIANHTGVDIHRNGDFQKNGNGTTSGIGSSVEKYIIDEDHMSFINNPNLTVRVPIAVGESDFENLNTEDVSSESDPEGSKDKLDDTSSSEGSTIDIKPEVEEVPVEQPEEYLDPDACFTEGCVQRFKCCQVNIEEGLGKSWWILRKTCFLIVEHNWFETFIIFMILLSSGALAFEDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWTAYGFVKFFTNAWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETSEIRFEIDEVNNKTDCEKLMEGNNTEIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKPDEQPDYEGNIYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKIQGIVFDFVTQQAFDIVIMMLICLNMVTMMVETDTQSKQMENILYWINLVFVIFFTCECVLKMFALRHYYFTIGWNIFDFVVVILSIVGMFLADIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKHEAGIDDMFNFETFGNSMICLFQITTSAGWDGLLLPILNRPPDCSLDKEHPGSGFKGDCGNPSVGIFFFVSYIIISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPDATQFIEYCKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFTKRVLGDSGELDILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVLQRAYRGHLARRGFICRKITSNKLENGGTHREKKESTPSTASLPSYDSVTKPDKEKQQRAEEGRRERAKRQKEVRESKC", "sequence_length": 1978, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "acd099290a0957cc18ccae0405ab4a1c51ec6af11796407d7d5d38423d880fd7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9WTU3.json", "taxon_id": "10090", "uniprot_accession": "Q9WTU3", "uniprot_release": "2026_03" } ], "pfam_id": "PF11933", "short_name": "Na_trans_cytopl", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-cell-cycle-g1-s-phase-transition-go1902807.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1902807", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-cell-cycle-g1-s-phase-transition-go1902807.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-dna-endoreduplication-go0032876.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032876", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-dna-endoreduplication-go0032876.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-transcription-by-rna-polymerase-i-go0016479.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016479", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-transcription-by-rna-polymerase-i-go0016479.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-vulval-development-go0040027.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0040027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-vulval-development-go0040027.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-brood-size-go0090727.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090727", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-brood-size-go0090727.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/cyclin-box-found-in-retinoblastoma-associated-protein-rb-family-the-rb-cd20548.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20548", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/cyclin-box-found-in-retinoblastoma-associated-protein-rb-family-the-rb-cd20548.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/retinoblastoma-associated-protein-a-box-ipr002720.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002720", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/retinoblastoma-associated-protein-a-box-ipr002720.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/retinoblastoma-associated-protein-b-box-ipr002719.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002719", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/retinoblastoma-associated-protein-b-box-ipr002719.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/retinoblastoma-associated-protein-n-terminal-ipr024599.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024599", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/retinoblastoma-associated-protein-n-terminal-ipr024599.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rb-a-pf01858.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01858", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rb-a-pf01858.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rb-b-pf01857.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01857", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rb-b-pf01857.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-10-472-140-1-10-472-140.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.472.140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-10-472-140-1-10-472-140.yaml" } ], "pfam_ids": [ "PF01857", "PF01858", "PF11934" ], "protein_name": "Retinoblastoma-like protein homolog lin-35", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKRAADEPGTSTTDPFHEQSPFDAVLAGTETTDTICEEPPAKRIDLDIKQEFNGGVQSGGLIKNESELTQMTIKQETEGNINEARREEEDEEQDEDSRTSMPPALGEDDDYEEDDADSFIDKTNTPPPSQSFLEGCRAANLPNDIVTGAWETYNHAVQRVSLEGSESAWQLSAIYYYLLSKGIKRRGKTIRILIQPFPVSILTIANSFDISVAEMLDKTARFVEIIHSRKIRRYQEYIRRIQEGLAVSCVIFKKFCRIFCKIFEEIKVGSENCPSSHELFTVLWTSFLVMKSRMTVDDLISNYQLLFSILDQVYTEMCSMKEGIVHHLNQKFVEDLLENDCTIIRALCTQFGGSVLDARHFSDHTFKKMEKTGIPSTWNFQEFRDLIMNVPKTAYENYLLQRGSIDERIFIPSVEDFSKIFQSPDTYSVADILKVSYSGRRFRDAEFLTKISNNHCLEKLALGGKVASEKLVTQSKEQPRVPCVEYNLELGNYPDDLESNNQSLYNRLTKIIGSWKLENSKLEEVCGTMSDSPMATILLKSDEMTNKFERTLSAELGETINENIPKYHYNVRKELELVFLIFMEKIIVAELKKKVREEDLLNVIRREEFLDSVFCFCVELILVSNGYDRPFPWSAELCGVHPFMFHKVIDLMITHEKQLSRQMVQHFSRIEETVIEYFSWKSDSPLWPMVVRCPFAHFQEFGEDWADKLNSYSPIKFTPIKKPDDLRDELGRPIVPQNQTSRTLRIFLKRTYFTAARRLQDLTDRVSMGARAKSQCWSLFDYLLRNDTLIFMDRHLDQILLCCVFVIMKINESSMLFTEIMAQYRRQSANSLLVYRSVTVFQEQLNPENPQAVNTKETILERLEGPQKEKTTVDIIKYYNIEFRDRIKYIIGQIDSASDEDLMEMPVATESGLMPVRVYLTHKLSIQTLPKTKHGESKQERAIANLEKSGITIAMERSGD", "sequence_length": 961, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8145b90810b1e0764414e4fbffba85ffefe454e4ac6e58ca3120b5b448aeb8a9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G5EDT1.json", "taxon_id": "6239", "uniprot_accession": "G5EDT1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3452-pf11934.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11934", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3452-pf11934.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P06400", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01857", "PF01858", "PF08934", "PF11934" ], "protein_name": "Retinoblastoma-associated protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8be63dca6cc82885cff6629df4ff5401afaa56f9a463140e77a51e46ba011ad0", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEPDFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFFNLLKEIDTSTKVDNAMSRLLKKYDVLFALFSKLERTCELIYLTQPSSSISTEINSALVLKVSWITFLLAKGEVLQMEDDLVISFQLMLCVLDYFIKLSPPMLLKEPYKTAVIPINGSPRTPRRGQNRSARIAKQLENDTRIIEVLCKEHECNIDEVKNVYFKNFIPFMNSLGLVTSNGLPEVENLSKRYEEIYLKNKDLDARLFLDHDKTLQTDSIDSFETQRTPRKSNLDEEVNVIPPHTPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAKAVGQGCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGPTDHLESACPLNLPLQNNHTAADMYLSPVRSPKKKGSTTRVNSTANAETQATSAFQTQKPLKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKTNILQYASTRPPTLSPIPHIPRSPYKFPSSPLRIPGGNIYISPLKSPYKISEGLPTPTKMTPRSRILVSIGESFGTSEKFQKINQMVCNSDRVLKRSAEGSNPPKPLKKLRFDIEGSDEADGSKHLPGESKFQQKLAEMTSTRTRMQKQKMNDSMDTSNKEEK", "sequence_length": 928, "sequence_origin": "PTM_REGISTRY_MIRROR", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/rb-e2f-complex-go0035189.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/eggshell-chorion-gene-amplification-go0007307.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0007307", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/eggshell-chorion-gene-amplification-go0007307.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/endomitotic-cell-cycle-go0007113.yaml", 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"mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-chromosome-segregation-go0051983.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051983", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-chromosome-segregation-go0051983.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-execution-phase-of-apoptosis-go1900117.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1900117", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-execution-phase-of-apoptosis-go1900117.yaml" }, { 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"canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/retinoblastoma-associated-protein-a-box-ipr002720.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/retinoblastoma-associated-protein-b-box-ipr002719.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002719", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/retinoblastoma-associated-protein-b-box-ipr002719.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/retinoblastoma-associated-protein-n-terminal-ipr024599.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024599", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/retinoblastoma-associated-protein-n-terminal-ipr024599.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rb-a-pf01858.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01858", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rb-a-pf01858.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rb-b-pf01857.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01857", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rb-b-pf01857.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-10-472-140-1-10-472-140.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.472.140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-10-472-140-1-10-472-140.yaml" } ], "pfam_ids": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/symplekin-c-pf12295.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/sympk-pta1-n-pf11935.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11935", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/sympk-pta1-n-pf11935.yaml" } ], "pfam_ids": [ "PF11935", "PF12295" ], "protein_name": "Symplekin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSIIGRSQFVSETANLFTDEKTATARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMGAVVEAFKQLNANLPPTLTDSQVSSVRKSLKMQLQTLLKNRGAFEFASTIRGMLVDLGSSTNEIQKLIPKMDKQEMARRQKRILENAAQSLAKRARLACEQQDQQQREMELDTEELERQKQKSTRVNEKFLAEHFRNPETVVTLVLEFLPSLPTEVPQKFLQEYTPIREMSIQQQVTNISRFFGEQLSEKRLGPGAATFSREPPMRVKKVQAIESTLTAMEVDEDAVQKLSEEEFQRKEEATKKLRETMERAKGEQTVIEKMKERAKTLKLQEITKPLPRNLKEKFLTDAVRRILNSERQCIKGGVSSKRRKLVTVIAATFPDNVRYGIMEFILEDIKQRIDLAFSWLFEEYSLLQGFTRHTYVKTENRPDHAYNELLNKLIFGIGERCDHKDKIILIRRVYLEAPILPEVSIGHLVQLSLDDEFSQHGLELIKDLAVLRPPRKNRFVRVLLNFSVHERLDLRDLAQAHLVSLYHVHKILPARIDEFALEWLKFIEQESPPAAVFSQDFGRPTEEPDWREDTTKVCFGLAFTLLPYKPEVYLQQICQVFVSTSAELKRTILRSLDIPIKKMGVESPTLLQLIEDCPKGMETLVIRIIYILTERVPSPHEELVRRVRDLYQNKVKDVRVMIPVLSGLTRSELISVLPKLIKLNPAVVKEVFNRLLGIGAEFAHQTMAMTPTDILVALHTIDTSVCDIKAIVKATSLCLAERDLYTQEVLMAVLQQLVEVTPLPTLMMRTTIQSLTLYPRLANFVMNLLQRLIIKQVWRQKVIWEGFLKTVQRLKPQSMPILLHLPPAQLVDALQQCPDLRPALSEYAESMQDEPMNGSGITQQVLDIISGKSVDVFVTDESGGYISAEHIKKEAPDPSEISVISTVPVLTSLVPLPVPPPIGSDLNQPLPPGED", "sequence_length": 1165, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fc2aec95604b8c99ca4231f1737e8c7d5d3f77677cb4c4b92054076c1405fb8c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8MSU4.json", "taxon_id": "7227", "uniprot_accession": "Q8MSU4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/symplekin-c-terminal-ipr022075.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022075", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/symplekin-c-terminal-ipr022075.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/symplekin-pta1-n-terminal-ipr032460.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032460", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/symplekin-pta1-n-terminal-ipr032460.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/symplekin-c-pf12295.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12295", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/symplekin-c-pf12295.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/sympk-pta1-n-pf11935.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11935", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/sympk-pta1-n-pf11935.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q92797", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11935", "PF12295" ], "protein_name": "Symplekin", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c789633dcae94f1348602f9e9fca0698ed3b6e053f82262f816006aeffa454eb", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MASGSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDTRKRPRDDSDSTLKKMKLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMVYLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEKVVKTESVLIKRRLSAQGQAISVVGSLSSMSPLEEEAPQAKRRPEPIIPVTQPRLAGAGGRKKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFNSGLKAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGASGSLDKYEDCLIRLLSGLQEKPDQKDGIFTKVVLEAPLITESALEVVRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDLSSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVRSFTPHQQAHIPNSIMTILEASGKQEPEAKEAPAGPLEEDDLEPLTLAPAPAPRPPQDLIGLRLAQEKALKRQLEEEQKLKPGGVGAPSSSSPSPSPSARPGPPPSEEAMDFREEGPECETPGIFISMDDDSGLTEAALLDSSLEGPLPKETAAGGLTLKEERSPQTLAPVGEDAMKTPSPAAEDAREPEAKGNS", "sequence_length": 1274, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c789633dcae94f1348602f9e9fca0698ed3b6e053f82262f816006aeffa454eb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q92797.json", "taxon_id": "9606", "uniprot_accession": "Q92797", "uniprot_release": "2026_03" } ], "pfam_id": "PF11935", "short_name": "SYMPK_PTA1_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11937", "short_name": "DUF3455", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 11, "discovery_scanned": true, "example_count": 11, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3456-ipr021852.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021852", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3456-ipr021852.yaml" } ], "pfam_ids": [ "PF11938" ], "protein_name": "Protein canopy homolog 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRMNDYQLEDDPVTKQKYFRRYAPRKGDKIYKEYKKFFFYSDAFRPLKFACEAIIEKYEDEIFELIAQEANHLADMLCNEKSDLCGTPTNSPEP", "sequence_length": 94, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5d29e9e7b8f6f0c124ef515bc2671bacc6a6eb145984eb5267c36a48e4f271b2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4VAB4.json", "taxon_id": "10090", "uniprot_accession": "Q4VAB4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/maternal-specification-of-dorsal-ventral-axis-oocyte-germ-line-encoded-go0007311.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0007311", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/maternal-specification-of-dorsal-ventral-axis-oocyte-germ-line-encoded-go0007311.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/polarity-specification-of-dorsal-ventral-axis-go0009951.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/polarity-specification-of-dorsal-ventral-axis-go0009951.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3456-ipr021852.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021852", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3456-ipr021852.yaml" } ], "pfam_ids": [ "PF11938" ], "protein_name": "Protein seele", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLTKALILFGLLALAQGYSFTSREVKCHVCKAVVTELEEAIAKEDPHKMADVSGFRLDAQGNSISKKVRLVKSEMFLTELMEKICEKMDDYLKATYKSNGKFTLLKMIINGQMNPDSSLVDFVQDGDLNKSLGHFCNEVLEDNDEIFVKAFQAEELGNDLDIKICSEQASYCDESPVQEEYDFDGKEEL", "sequence_length": 189, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f7dd1609a0d5331bc5ec52b2144cbbe19d91bcffc48d53e38e97855ec5322fd4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7JXF7.json", "taxon_id": "7227", "uniprot_accession": "Q7JXF7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3456-ipr021852.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021852", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3456-ipr021852.yaml" } ], "pfam_ids": [ "PF11938" ], "protein_name": "Protein canopy homolog 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCGLRFIMGPVRLEILLFILAAYGAWAEATKEEEDDTERLPSKCEVCKLLSMELQEALSRTGRSREVLELGQVLDTGKRKRHVPYSLSETRLEEALENLCERILDYNVHAERKGSLRYAKGQSQTMATLKGLVQKGVKVDLGIPLELWDEPSVEVTFLKKQCETMLEEFEDVVGDWYFHHQEQPLQHFLCERHVLPASETACLREAWTGKEKISDGQEEADDEEEEEEEEITKTSGNPKHDPEDL", "sequence_length": 245, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d82839d2c1f8f54aeeddefe472016fdd46a87eda7939fe3841a068cae4b6b25", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BQ47.json", "taxon_id": "10090", "uniprot_accession": "Q8BQ47", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { 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"ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AAN1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11939" ], "protein_name": "Hydrogenase-2 operon protein HybE", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8e0c963bbac4ae3926ce6ff36b391e05e12509a7f8b9fcde2245634d523ea570", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA", "sequence_length": 162, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8e0c963bbac4ae3926ce6ff36b391e05e12509a7f8b9fcde2245634d523ea570", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AAN1.json", "taxon_id": "83333", "uniprot_accession": "P0AAN1", "uniprot_release": "2026_03" } ], "pfam_id": "PF11939", "short_name": "NiFe-hyd_HybE", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Plasmodium falciparum (isolate 3D7)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3458-pf11940.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3458-pf11940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf3458-c-pf17432.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17432", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf3458-c-pf17432.yaml" } ], "pfam_ids": [ "PF01433", "PF11940", "PF17432", "PF17900" ], "protein_name": "Aminopeptidase N", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLTKGCAYKYIIFTVLILANILYDNKKRCMIKKNLRISSCGIISRLLKSNSNYNSFNKNYNFTSAISELQFSNFWNLDILQKDIFSNIHNNKNKPQSYIIHKRLMSEKGDNNNNNHQNNNGNDNKKRLGSVVNNEENTCSDKRMKPFEEGHGITQVDKMNNNSDHLQQNGVMNLNSNNVENNNNNNSVVVKKNEPKIHYRKDYKPSGFIINNVTLNINIHDNETIVRSVLDMDISKHNVGEDLVFDGVGLKINEISINNKKLVEGEEYTYDNEFLTIFSKFVPKSKFAFSSEVIIHPETNYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPHLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHNYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPIRPESYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAMEQAYKMKKADNSANLNQYLLWFSQSGTPHVSFKYNYDAEKKQYSIHVNQYTKPDENQKEKKPLFIPISVGLINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDNLTDEERILLLKYDSDAFVRYNSCTNIYMKQILMNYNEFLKAKNEKLESFNLTPVNAQFIDAIKYLLEDPHADAGFKSYIVSLPQDRYIINFVSNLDTDVLADTKEYIYKQIGDKLNDVYYKMFKSLEAKADDLTYFNDESHVDFDQMNMRTLRNTLLSLLSKAQYPNILNEIIEHSKSPYPSNWLTSLSVSAYFDKYFELYDKTYKLSKDDELLLQEWLKTVSRSDRKDIYEILKKLENEVLKDSKNPNDIRAVYLPFTNNLRRFHDISGKGYKLIAEVITKTDKFNPMVATQLCEPFKLWNKLDTKRQELMLNEMNTMLQEPNISNNLKEYLLRLTNKL", "sequence_length": 1085, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "35262d052c4961936783bc77720774eb1e87d9d246064d58510c3d5192cc4b09", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O96935.json", "taxon_id": "36329", "uniprot_accession": "O96935", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3458-pf11940.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3458-pf11940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf3458-c-pf17432.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17432", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf3458-c-pf17432.yaml" } ], "pfam_ids": [ "PF01433", "PF11940", "PF17432", "PF17900" ], "protein_name": "Aminopeptidase N", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEGALVISNLPERFTLKIINEISPAANTALEGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQFAEDASPMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQSGTPIVTVKDDYNPETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKVIPLQKGGHPVNSVLNVTQAEQTFVFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDEKIDPALAAEILTLPSVNEMAELFDIIDPIAIAEVREALTRTLATELADELLAIYNANYQSEYRVEHEDIAKRTLRNACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKWHQNGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAEDGSGYLFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLENLSGDLYEKITKALA", "sequence_length": 870, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b3c347b262ed5fa67eacda42b7e62bc2df9f80be6e00aaa7cd270e0f04293317", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P04825.json", "taxon_id": "83333", "uniprot_accession": "P04825", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3458-pf11940.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3458-pf11940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf3458-c-pf17432.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17432", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf3458-c-pf17432.yaml" } ], "pfam_ids": [ "PF01433", "PF11940", "PF17432", "PF17900" ], "protein_name": "Puromycin-sensitive aminopeptidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDAPKEIFLKNYTKPDYYFETVDLSFSLGEEKTIVSSKIKVSPRVKGSSAALVLDGHDLKLLSVKVEGKLLKEGDYQLDSRHLTLPSLPAEESFVLEIDTEIYPHKNTSLEGLYKSSGNFCTQCEAEGFRKITFYQDRPDIMAKYTCRVEGDKTLYPVLLSNGNLISQGDIEGGRHYALWEDPFKKPCYLFALVAGQLVSRDDTFTTRSGRQVSLKIWTPAEDLPKTAHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETATDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRTVKRIADVSKLRIYQFPQDAGPMAHPVRPHSYIKMDNFYTVTVYEKGAEVVRMYKTLLGTQGFRKGIDLYFERHDEQAVTCEDFFAAMRDANNADFANFLQWYSQAGTPVVKVVSSYNADARTFSLKFSQEIPPTPGQPTKEPTFIPVVVGLLDSSGKDITLSSVHHDGTVQTISGSSTILRVTKKEEEFVFSDIPERPVPSLFRGFSAPVRVETDLSNDDLFFLLAHDSDEFNRWEAGQVLARKLMLNLVSDFQQNKPLALNPKFVQGLGSVLSDSSLDKEFIAKAITLPGEGEIMDMMAVADPDAVHAVRKFVRKQLASELKEELLKIVENNRSTEAYVFDHSNMARRALKNTALAYLASLEDPAYMELALNEYKMATNLTDQFAALAALSQNPGKTRDDILADFYNKWQDDYLVVNKWFLLQSTSDIPGNVENVKKLLDHPAFDLRNPNKVYSLIGGFCGSPVNFHAKDGSGYKFLGDIVVQLDKLNPQVASRMVSAFSRWKRYDETRQGLAKAQLEMIMSANGLSENVFEIASKSLAA", "sequence_length": 883, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b4d070b42e886c33e3b5771d43f51f221335a22cad37620794e80aeacfa39698", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8H0S9.json", "taxon_id": "3702", "uniprot_accession": "Q8H0S9", "uniprot_release": "2026_03" } ], "pfam_id": "PF11940", "short_name": "DUF3458", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3459-pf11941.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11941", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3459-pf11941.yaml" } ], "pfam_ids": [ "PF00128", "PF11941" ], "protein_name": "Malto-oligosyltrehalose trehalohydrolase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPEFRVWAPKPALVRLDVNGAVHAMTRSADGWWHTTVAAPADARYGYLLDDDPTVLPDPRSARQPDGVHARSQRWEPPGQFGAARTDTGWPGRSVEGAVIYELHIGTFTTAGTFDAAIEKLDYLVDLGIDFVELMPVNSFAGTRGWGYDGVLWYSVHEPYGGPDGLVRFIDACHARRLGVLIDAVFNHLGPSGNYLPRFGPYLSSASNPWGDGINIAGADSDEVRHYIIDCALRWMRDFHADGLRLDAVHALVDTTAVHVLEELANATRWLSGQLGRPLSLIAETDRNDPRLITRPSHGGYGITAQWNDDIHHAIHTAVSGERQGYYADFGSLATLAYTLRNGYFHAGTYSSFRRRRHGRALDTSAIPATRLLAYTCTHDQVGNRALGDRPSQYLTGGQLAIKAALTLGSPYTAMLFMGEEWGASSPFQFFCSHPEPELAHSTVAGRKEEFAEHGWAADDIPDPQDPQTFQRCKLNWAEAGSGEHARLHRFYRDLIALRHNEADLADPWLDHLMVDYDEQQRWVVMRRGQLMIACNLGAEPTCVPVSGELVLAWESPIIGDNSTELAAYSLAILRAAEPA", "sequence_length": 580, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "54364b8425cc585dd00c53a74814b7113e5096fbfb3d615aec30e35f27808ffb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WQ22.json", "taxon_id": "83331", "uniprot_accession": "P9WQ22", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "P9WQ23", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/mycobacterium-trehalose-biosynthesis.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Reactome:R-MTU-868688", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/mycobacterium-trehalose-biosynthesis.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3459-pf11941.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11941", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3459-pf11941.yaml" } ], "pfam_ids": [ "PF00128", "PF11941" ], "protein_name": "Malto-oligosyltrehalose trehalohydrolase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPEFRVWAPKPALVRLDVNGAVHAMTRSADGWWHTTVAAPADARYGYLLDDDPTVLPDPRSARQPDGVHARSQRWEPPGQFGAARTDTGWPGRSVEGAVIYELHIGTFTTAGTFDAAIEKLDYLVDLGIDFVELMPVNSFAGTRGWGYDGVLWYSVHEPYGGPDGLVRFIDACHARRLGVLIDAVFNHLGPSGNYLPRFGPYLSSASNPWGDGINIAGADSDEVRHYIIDCALRWMRDFHADGLRLDAVHALVDTTAVHVLEELANATRWLSGQLGRPLSLIAETDRNDPRLITRPSHGGYGITAQWNDDIHHAIHTAVSGERQGYYADFGSLATLAYTLRNGYFHAGTYSSFRRRRHGRALDTSAIPATRLLAYTCTHDQVGNRALGDRPSQYLTGGQLAIKAALTLGSPYTAMLFMGEEWGASSPFQFFCSHPEPELAHSTVAGRKEEFAEHGWAADDIPDPQDPQTFQRCKLNWAEAGSGEHARLHRFYRDLIALRHNEADLADPWLDHLMVDYDEQQRWVVMRRGQLMIACNLGAEPTCVPVSGELVLAWESPIIGDNSTELAAYSLAILRAAEPA", "sequence_length": 580, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "54364b8425cc585dd00c53a74814b7113e5096fbfb3d615aec30e35f27808ffb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WQ23.json", "taxon_id": "83332", "uniprot_accession": "P9WQ23", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arthrobacter sp. (strain Q36)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3459-pf11941.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11941", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3459-pf11941.yaml" } ], "pfam_ids": [ "PF00128", "PF11941" ], "protein_name": "Malto-oligosyltrehalose trehalohydrolase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTHTYPREAAKPVLGPARYDVWAPNAESVTLLAGGERYAMQRRAETGPEDAGWWTAAGAPTDGNVDYGYLLDGDETPLPDPRTRRQPDGVHALSRTFDPSAYSWQDDAWQGRELQGAVIYELHLGTFTPEGTLEAAAGKLDYLAGLGVDFIELLPVNAFNGTHNWGYDGVQWFAVHEAYGGPEAYQRFVDAAHAAGLGVIQDVVYNHLGPSGNYLPRFGPYLKQGEGNTWGDSVNLDGPGSDHVRRYILDNLAMWLRDYRVDGLRLDAVHALKDERAVHILEDFGALADQISAEVGRPLTLIAESDLNNPRLLYPRDVNGYGLEGQWSDDFHHAVHVNVTGETTGYYSDFDSLAALAKVLRDGFFHDGSYSSFRERHHGRPINFSAVHPAALVVCSQNHDQIGNRATGDRLSQTLPYGSLALAAVLTLTGPFTPMLLMGEEYGASTPWQFFTSHPEPELGKATAEGRIKEFERMGWDPAVVPDPQDPETFRRSKLDWAEAAEGDHARLLELYRSLTALRRSTPDLTKLGFEDTQVAFDEDARWLRFRRGGVQVLLNFSEQPVSLDGAGTALLLATDDAVRLEGERAELGPLSAAVVSD", "sequence_length": 598, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c025cc3fd254f053ede330c2ea592351145450612dbdc13d01d6114ac7306f9f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q44316.json", "taxon_id": "104027", "uniprot_accession": "Q44316", "uniprot_release": "2026_03" } ], "pfam_id": "PF11941", "short_name": "DUF3459", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11943", "short_name": "DUF3460", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3461-pf11944.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11944", "section": "canonical_examples", "url": 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"https://rest.uniprot.org/uniprotkb/Q8VDD8.json", "taxon_id": "10090", "uniprot_accession": "Q8VDD8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/wash1-wahd-domain-ipr021854.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021854", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/wash1-wahd-domain-ipr021854.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/wash-wahd-pf11945.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11945", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/wash-wahd-pf11945.yaml" } ], "pfam_ids": [ "PF11945" ], "protein_name": "WAS protein family homolog 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFHEMQAHKNALGTSGEQQAADITGPTPHQGGWKQVEQSRSQVQAIGEKVSLAQAKIEKIKGSKKAIKVFSSAKYPAPERLQEYGSIFTGAQDPGLQRRPRHRIQSKHRPLDERALQEKLKDFPVCVSTKPEPEDDAEEGLGGLPSNISSVSSLLLFNTTENLYKKYVFLDPLAGAVTKTHVMLGAETEEKLFDAPLSISKREQLEQQVPENYFYVPDLGQVPEIDVPSYLPDLPSIANDLMYSADLGPGIAPSAPGTIPELPTFHTEVAEPLKADLQDGVLTPPPPPPPPPPAPEVLASAPPLPPSTAAPVGQGARQDDGSSSASPSVQGAPREVVDPSGGWATLLESIRQAGGIGKAKLRSMKERKLEKKKQKEQEQVRATSQGGHLMSDLFNKLVMRRKGISGKGPGAGEGPGGAFARVSDSIPPVPPPQQPQAEEDEDDWES", "sequence_length": 447, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6384d2d3c414fe639b37277e15ff8277388cd1b9994f2fb670b9b5a4458da513", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NQA3.json", "taxon_id": "9606", "uniprot_accession": "Q9NQA3", "uniprot_release": "2026_03" } ], "pfam_id": "PF11945", "short_name": "WASH_WAHD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11946", "short_name": "DUF3463", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3464-pf11947.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11947", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3464-pf11947.yaml" } ], "pfam_ids": [ "PF11947" ], "protein_name": "Protein PAM68, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASVPCSFKLSAHRRSSSKLDGNNKQCSSLVERLRDKTKSQVPKSITCINRLEISRIAPLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87db12a83422f9f44001e2f231366dec362d36ddf154b272ef7947284a8c2494", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O49668.json", "taxon_id": "3702", "uniprot_accession": "O49668", "uniprot_release": 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"qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11947", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3464-pf11947.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9LTD9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11947" ], "protein_name": "Uncharacterized protein PAM68-like", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": 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"pfam_id": "PF11947", "short_name": "DUF3464", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11948", "short_name": "DUF3465", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11949", "short_name": "DUF3466", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11950", "short_name": "DUF3467", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fungal-trans-2-pf11951.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fungal-trans-2-pf11951.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P26370", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00172", "PF11951" ], "protein_name": "Transcriptional activator protein UGA3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6c6e7219450102cbf9049f81ab0912145dc77d19d62d327cc2f087ce1ced8e45", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNYGVEKLKLKYSKHGCITCKIRKKRCSEDKPVCRDCRRLSFPCIYISESVDKQSLKKIKADIQHQLISKKRKHAPDSAQKAAVATRTRRVGSDEQDNQVYLSKPLEDCISQKLDSMGLQLYNYYRSHLANIISIAPMNQNYYLNIFLPMAHENDGILFAILAWSANHLSISSSNELRKDEIFVNLANKYTYMSLSHLKTNEGSSACAKLGFLYSLAQILILCGSEICQGDVKFWKILLNIGKNLIENHVGKDVSRILTTTTEEPSLEERIIFPNFNSVVKYWLIVNFIYHDILNFNTTSFPIEQYEKFFQRDQNSLPSSANFIESIDSPIEEIDPLIGINKPILLLLGQVTNLTRFLQTMEQEEMLEHGDKILSLQVEIYKLQPSLMALEHLDDEKKFYYLELFEIMKISTLMFFQLTLLKIDKDSLELQILRNKLDSKLDKVIGTFLEGSLCFPLFIYGVCIQVEDMEKKIDLEAKFDDILKRYKCYNFQNARLLIRKIWQNEADGISEHDLVHMIDELDYNINFA", "sequence_length": 528, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6c6e7219450102cbf9049f81ab0912145dc77d19d62d327cc2f087ce1ced8e45", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P26370.json", "taxon_id": "559292", "uniprot_accession": "P26370", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { 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"NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9NXV6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11952", "PF26535" ], "protein_name": "CDKN2A-interacting protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e355da9624a3da2fc8fdb505794ed03d4952d96524ba6f270c9ec2f1f2fd4c22", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAQEVSEYLSQNPRVAAWVEALRCDGETDKHWRHRRDFLLRNAGDLAPAGGAASASTDEAADAESGTRNRQLQQLISFSMAWANHVFLGCRYPQKVMDKILSMAEGIKVTDAPTYTTRDELVAKVKKRGISSSNEGVEEPSKKRVIEGKNSSAVEQDHAKTSAKTERASAQQENSSTCIGSAIKSESGNSARSSGISSQNSSTSDGDRSVSSQSSSSVSSQVTTAGSGKASEAEAPDKHGSASFVSLLKSSVNSHMTQSTDSRQQSGSPKKSALEGSSASASQSSSEIEVPLLGSSGSSEVELPLLSSKPSSETASSGLTSKTSSEASVSSSVAKNSSSSGTSLLTPKSSSSTNTSLLTSKSTSQVAASLLASKSSSQTSGSLVSKSTSLASVSQLASKSSSQTSTSQLPSKSTSQSSESSVKFSCKLTNEDVKQKQPFFNRLYKTVAWKLVAVGGFSPNVNHGELLNAAIEALKATLDVFFVPLKELADLPQNKSSQESIVCELRCKSVYLGTGCGKSKENAKAVASREALKLFLKKKVVVKICKRKYRGSEIEDLVLLDEESRPVNLPPALKHPQELL", "sequence_length": 580, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e355da9624a3da2fc8fdb505794ed03d4952d96524ba6f270c9ec2f1f2fd4c22", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NXV6.json", "taxon_id": "9606", "uniprot_accession": "Q9NXV6", "uniprot_release": "2026_03" } ], "pfam_id": "PF11952", "short_name": "XTBD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Azotobacter vinelandii", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3470-pf11953.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11953", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3470-pf11953.yaml" } ], "pfam_ids": [ "PF00037", "PF11953" ], "protein_name": "Ferredoxin-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEVPEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHLER", "sequence_length": 107, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2b98f7367b5d9de897e599d320f8460fef38b6e560400034f8f9898d7975d256", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P00214.json", "taxon_id": "354", "uniprot_accession": "P00214", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Stutzerimonas stutzeri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3470-pf11953.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11953", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3470-pf11953.yaml" } ], "pfam_ids": [ "PF00037", "PF11953" ], "protein_name": "Ferredoxin 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEVPEDQQEFIELNADLAEVWPNITEKKDALADAEEWDGVKDKLQYLER", "sequence_length": 107, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "64649b820de4d328891666ecdbd2a8a10abc90e1935aedbfa1913b1d2b797d46", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P08811.json", "taxon_id": "316", "uniprot_accession": "P08811", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhodobacter capsulatus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3470-pf11953.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11953", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3470-pf11953.yaml" } ], "pfam_ids": [ "PF00037", "PF11953" ], "protein_name": "Ferredoxin-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTEPGMEDWVEFNRTYASQWPVITIKKDPMPDHKKYDGETGKREKYFSPNPGTGD", "sequence_length": 112, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9e7ecd7417923880275e9ad8910dadf448048796a0f04b81660037f17ab78053", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0CY91.json", "taxon_id": "1061", "uniprot_accession": "P0CY91", "uniprot_release": "2026_03" } ], "pfam_id": "PF11953", "short_name": "DUF3470", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus campestris (strain IBT 28561)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3471-pf11954.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11954", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3471-pf11954.yaml" } ], "pfam_ids": [ "PF00144", "PF11954" ], "protein_name": "Unguisins hydrolase ungD'", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISKTEDSGDPLDQDFAEVVKQTLDRWHIPGMSVAVVDGPDTWTKGYGLAQLPNTNVTPDTLFYTGSTTKAFTAAVLSLLVDDNKNYPQVQWNTPVNQLLRDDFVLSHEWDTNNITIEDILSHRTGMPRHEFAFGGDYDGHPASLRDIVRSVRYMQRSAPPRTTYQYSNLMFIVASYLIETLTGKWIGDVFREKIWRPLGMDSTYLSLEDARASGKELAQGYLYNSSLPGYEPVPLKNKPEVSGAGAAISNIKDYAKWATALLKRAPDVLSPAGYSAIWSARTVTPTHDPFITPSAYALAWNTQVYQGVEIVWHDGGIDGFGTEIALIPSLGFAVVTQANTTYSSNYAGTALVYHLIDKKLDVAPDKRFDWNKWYEDLERQMKEAVKNARQTFYPTVPSPAPPPTLPIGKYTGNYWHPAYRQLTILWDEERNLLYADRKDSTTPCQLTFIPVSREFFLVRLTVVGAEAMLPAEFRLGPDGTPSMVGILWEPSLGDEKIWLKKEGDTHFKEMYGGIVDSTAGKKRVPDTIHPIDL", "sequence_length": 534, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e8aa59ef5aad9a232532ebe0efc061b3159e75abcba1258a2d09b75ee46a6eb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A2I1D2N1.json", "taxon_id": "1392248", "uniprot_accession": "A0A2I1D2N1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus violaceofuscus (strain CBS 115571)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3471-pf11954.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11954", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3471-pf11954.yaml" } ], "pfam_ids": [ "PF00144", "PF11954" ], "protein_name": "Unguisins hydrolase ungD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSAPDNDSTPLDGDFEREVYEALKLWKIPGIAIAVIDEESTWTEGYGIADLASSTKVEANTLFYGGSTTKAFTAALMSMLVEDNDRYPHVQWSTPVCELIRDDFVLGHPGRTADTTIEDILSHRTGMPGHDFSMGSVHAGQQATVQDVVRSLRFLPAAAPPRTTYIYNNAMYIVASHLIQTVTGEELRSLFQRYIWDPLGMSHTYLRLKDAVAGQEPLAKGYADESATDDDPQYEEVPWKDRPEISGAGAIISSVGDYAKWVHALMNPEASSSSSSSSDSTATTSLSAAICADVGTARTLIPPPSEPFLTPMAYCLGWNRYVYRGVEILTHDGGIDGFGAEIAMIPALKYGVVTMANSTYTSNFGGTCLVYKLIDDKLGIPAEDRYDWTQKYTDLVAQMDAYNANAVSYFYPTLPDPPRPGPTLPLAAYAGLYWHDGYGALELVLDAADGKLHATRTQAQYTTACALTFEHISGDFFTATVAVVGAQTVVPAEFALSPAGVPRAIGIGWEPHLGTEKRTWMRRVGADEAGRLLRGDQSHPHHAEAYVSYQREEAQLPEFLTSHLFV", "sequence_length": 567, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c4b29fccc0db893d9756909de33234dd9ae8377f3b65040646c3bcbd99cae085", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A0A2V5GVB6.json", "taxon_id": "1450538", "uniprot_accession": "A0A2V5GVB6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/beta-lactamase-related-ipr001466.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR001466", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/beta-lactamase-related-ipr001466.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/peptidase-s12-pab87-related-c-terminal-ipr021860.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021860", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/peptidase-s12-pab87-related-c-terminal-ipr021860.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3471-pf11954.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11954", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3471-pf11954.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/beta-lactamase-transpeptidase-like-ipr012338.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR012338", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/beta-lactamase-transpeptidase-like-ipr012338.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/dd-peptidase-beta-lactamase-superfamily-3-40-710-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.710.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/dd-peptidase-beta-lactamase-superfamily-3-40-710-10.yaml" } ], "pfam_ids": [ "PF00144", "PF11954" ], "protein_name": "Penicillin-binding protein 4*", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKQNKRKHLQTLFETLGEKHQFNGTVLAAEGGDILYHHSFGYAEMTEKRPLKTNSLFELASLSKPFTALGIILLEEKGILGYEDKVDRWLPGFPYQGVTIRHLLNHTSGLPDYMGWFFANWDSHKIAVNQDIVDMLMNEGLSGYFEPNEGWMYSNTGYVLLAVIIEKASGMSYADFIKTSIFLPAGMNETRVYNRRLSPERIDHYAYGYVYDVHSETYVLPDELEETNYVVYLDGIQGDGTVNSVTSDLFRFDQALYQDDFISKASKESAFSPVRLNNGETIDYGFGWVLQNSPEKGRIVSHSGGWPGYSTMMIRYIDHRKTLIYLSNKEEDTEYEQAILKAAEHILFGQPYDVPERPADKKKKAIDTAIYSRYVGSYLLQDGTAAQVTTENERLYLEIAGQLRLELFPSSETRFFLRALSVEVEFTLGEDAAKSFILYEDGSEEEAVRTK", "sequence_length": 451, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b354e14b3816a9f5d26c29f0fa1638943bc9ececb136e0f08e4a48bf850baf79", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32959.json", "taxon_id": "224308", "uniprot_accession": "P32959", "uniprot_release": "2026_03" } ], "pfam_id": "PF11954", "short_name": "DUF3471", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Burkholderia pseudomallei (strain 1026b)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bpss1860-pf11958.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11958", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bpss1860-pf11958.yaml" } ], "pfam_ids": [ "PF11958" ], "protein_name": "Surface attachment protein BP1026B_II1992", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFNCIAATILAAVAADATAAGACLNGSTIASTTRAPLVARQGSVFSSTLYDPAITSNNRTHNPVMLTVQVTNNGRPVAGCDVAWQPRGAGGASGWLFPASASTDANGIASAWWVAGSGAAQTAVASIRRFDGTTQGVAIGGSAQPHATRANSIHLNYEPASDWTAFRVDVTPEALAPTTYWEAIGWPGAYTGIQSIDGKQNGLVLFSVWDVNGKSPQIIAKGPGVDCTQFGGEGTGYKCAKRHAPVAGRTYRFMASIAPVAGQNQTDYSVWFTDTSTNARELIATLRYQKAVQSANYANSFVEDWATQGASCLGATQRAGQYGNVWALDRASAQWRAVKRASTSAVYTPDHNEVCSNYQFSVVNGRFRMSTGGHAVGQPLNLPNGPKSFPLTLP", "sequence_length": 395, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f9081b480664ca9ea1c75117fc39aaac8eaee8c11c603a528d03b51f63a55eef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0H3HZ79.json", "taxon_id": "884204", "uniprot_accession": 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"data/traits/sequence/family/pfam/duf668-pf05003.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05003", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf668-pf05003.yaml" } ], "pfam_ids": [ "PF05003", "PF11961" ], "protein_name": "Protein PSK SIMULATOR 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGGLCSRSSSVNNAPGGTFAHVNGHHLNNNASDLNSHSGESGLKDDPSPVTENVDDNKHTSESFSFPIVSSGSHPQNIEDGIPRLSRVLSQKSRSTKSRQAAVAKVSEVSSLLGRAGTMGLGKAVDVLDTLGSSMTNLNLSGGFSSATTVKGNKISILSFEVANTIVKGANLMHSLSKDSITHLKEVVLPSEGVQNLISKDMDELLRIAAADKREELRIFSGEVVRFGNRCKDPQYHNLDRFFDRLGSEFTPQKHLKQEAETIMHQMMSFVHFTADLYHELHALDRFEQDYQRKIQEEENPSTAQRGVGDTLAILRTELKSQKKHVRNLKKKSLWSRILEEVMEKLVDVVHFLHLEIHEAFGGADPDKPANDPPINHKKLGSAGLALHYANIITQIDTLVSRSSTMPASTRDALYQGLPPSIKSALRSRIQSFQVKEELTVPQIKAEMEKTLQWLVPVATNTTKAHHGFGWVGEWASSGSEANQRPAGQTILRIDTLHHADKEKTEAYILDLVVWLHHLVTQVRATTGYGLRSPVKSPIRSPNQKTIQLSSGSHNPSMGLPLLTTEDQEMLRDVSKRRKTPGISKSQEFETVAKARLCKHHRLSKSSSHSPMMGEMMKNKKDTFSTRRPSSVPIIDFDIDRMKALDVIDRVDTIRSL", "sequence_length": 657, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "44ee1cd546a963ba8da48404f3b6782fe70e7dbdb532e72e94c497de751bf9d4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9XID5.json", "taxon_id": "3702", "uniprot_accession": "Q9XID5", "uniprot_release": "2026_03" } ], "pfam_id": "PF11961", "short_name": "DUF3475", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/peptidase-g2-imc-autoproteolytic-cleavage-domain-ipr021865.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021865", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/peptidase-g2-imc-autoproteolytic-cleavage-domain-ipr021865.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/peptidase-g2-pf11962.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11962", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/peptidase-g2-pf11962.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/head-decoration-protein-d-2-40-300-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.40.300.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/head-decoration-protein-d-2-40-300-10.yaml" } ], "pfam_ids": [ "PF11962" ], "protein_name": "Putative phage-related protein YobO", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVHFKNCPDPSLNANSQSHPEFSSELEHIKTRMQNFIKHSVTDQNIEVTDARVTAEGEVTSLLKERLDKEYYRLLSKITREVNVADFGAVPDGRDNTEAFRKAIGNGRVKVHVPAGEYLVQGIKLPSWTTIVGQGKGITVIKLHEDTPAHEWVITNDDYQNGNRNIFVQGMSLDWNPSRQCGVRNPGGQFSSCLTFAKVEYGWIKDVEAINAGLHGIDITSPTYDHLPDTDWTKDGSRYIWIDNCVTYGSGDDGITTHYSEYIFISNCHSGNPRGTEFAEGVSNSNGIEIDDGSRHVWLLNNFTSGNIRGVEVKAHELWPASQNVHIIGHISYRDVRAFDLRHIGHHQITDPESTTAYDVTLIDCSAVEPVFNSLYDAVTPRALVISAYKNVNVSGFTAIGDPDYDYKENPVVALQYRSQNITINGIKIRGFKKAGVDINLSGGSNKTDYIKISNFDIYKSAPKGISIGGGLYNVNILNGTMITDNGTVAIQSPNNQATILGVQSEGYSVAASIKGQTYQQVPINLKGGIQLATTSGFAVNQTSAVIAGTGDITARGERNAVISSSGGSSTEGSRALIASSNNAHIRGNQASRTILSSENIILEEPYTVAGGHQSIKWLLDSVRGNGTFAGAISSSLGGYGEYFESSTGQLIHTGTIVTLRGEKIVPANVGDYMLGVISETSAFISGASSFVWQGRYLTNEFGGFIYETVTDEESGELIRVPKQNPDYDTALEANYHSRAARDEWHVVGLVGQHYVRIDETVNQGDYLTAHNGIGTKATEGSWKVMKITSAYTSEKGYGIALTVIK", "sequence_length": 806, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bafdd1b195452f68c701bac3593fb2fb278f2b1892f081423a3d3988755b82c5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34433.json", "taxon_id": "224308", "uniprot_accession": "O34433", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus phage phi29", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/pect-lyase-rhga-epim-pf12708.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12708", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/pect-lyase-rhga-epim-pf12708.yaml" } ], "pfam_ids": [ "PF11962", "PF12708" ], "protein_name": "Pre-neck appendage protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTKPELKRFEQFGEMMVQLYERYLPTAFDESLTLLEKMNKIIHYLNEIGKVTNELIEEWNKVMEWILNDGLEDLVKETLERWYEEGKFADLVIQVIDELKQFGVSVKTYGAKGDGVTDDIRAFEKAIESGFPVYVPYGTFMVSRGIKLPSNTVLTGAGKRNAVIKFMDSVGRGESLMYNQNVTTGNENIFLSSFTLDGNNKRLGQGISGIGGSRESNLSIRACHNVYIRDIEAVDCTLHGIDITCGGLDYPYLGDGTTAPNPSENIWIENCEATGFGDDGITTHHSQYINILNCYSHDPRLTANCNGFEIDDGSRHVVLSNNRSKGCYGGIEIKAHGDAPAAYNISINGHMSVEDVRSYNFRHIGHHAATDPQSVSAKNIVASNLVSIRPNNKRGFQDNATPRVLAVSAYYGVVINGLTGYTDDPNLLTETVVSVQFRARNCSLNGVGLTGFSNSDNGIYVIGGSRGGDAVNISNVTLNNSGRYGVSIGSGIENVSITNISGIGDGINSPVALVSTINSNPEISGLSSIGYPTAARVAGTDYNDGLTLFNGAFRASTTSSGKIHSEGFIMGSTSGCEASVSKSGVLTSSSSKTSSERSLIAGSSTSEAKGTYNTILGSLGAVADEQFAALISASQSRASGNHNLILSSYGINTTGSYKVNGGFEKINWELDSLNGRIKARDTVTGGNTWSDFAEYFESLDGQVIETGYLVTLEKGKIRKAEKGEKIIGVISETAGFVLGESSFEWQGAVLKNEFGGIIYEEVTTEDGVKFKRPLPSPDFDPNKNYIPRSQRREWHVVGLLGQIAVRIDETVKQGHGIDAVGGVATDGDNFIVQEITTPYTKEKGYGVAIVLVK", "sequence_length": 854, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bb1ddb4a7feb9ffa11414ef14dd674379fa6a7407202d1a746b72c6966b4c091", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P20345.json", "taxon_id": "2884424", "uniprot_accession": "P20345", "uniprot_release": "2026_03" } ], "pfam_id": "PF11962", "short_name": "Peptidase_G2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bovine coronavirus (strain 98TXSF-110-ENT)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-nab-pf16251.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-nab-pf16251.yaml" } ], "pfam_ids": [ "PF01661", "PF01831", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11963", "PF16251", "PF16348", "PF19213", "PF19217", "PF19218", "PF22104" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMVDCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRGCNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQSRKFIVPWVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYALIRGYRGVKPLLYVDQYGCDYTGGLADGLEAYADKTLQEMKALFPIWSQELPFDVTVAWHVVRDPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILRQHNLVDIMSCFYMEADAVVNAFYGVDLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYETGDLLAQSSGVLPVNPVLHTKSAAGYGGFGCKDSFTLYGQTVVYFGGCVYWSPARNIWIPILKSSVKSYDGLVYTGVVGCKAIVKETNLICKALYLDYVQHKCGNLHQRELLGVSDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKICHAVVSKSKELLDVSLDSLSAAIHYLNSKIVDLAQHFSDFGTSFVSKIVHFFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKNIPRYASAVAQAFRSVAKVVLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCGYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLEESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEMSDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFLLSLVCFIGLWCLMPTYTVHKSDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVVDQDLGSTVFNVPTKVLRYGYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFAMADGSPQPYCYTEGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFAYCRRLGTSVRSDGTFEEMALTTFMITKDSYCKLKNSLSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLVIDALASMTGVSLETLLAAIKRLKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLVKGIVCWIMASTFLFSCIITAFVKWTMFMYVTTNMLSITFCALCVISLAMLLVKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVEYTYTDEVIYGMLLLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILLMLASLFGTYTWTTALSMAAAKVIAKWVAVNVLYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARSSGSANQQQLKQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQTIQDSDGTNKQLNEISDDCNWPLVIIANRHNEVSATVLQNNELMPAKLKTQVVNSGPDQTCNTPTQCYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGIKDPVSYVLTHDVCQVCGFWRDGSCSCVSTDTTVQSKDTNFLNGFGVRV", "sequence_length": 4383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f40b354462db645b57f9bc71b7743d9394f4b82ae4ff5fffc222e5186f6466e6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6T8.json", "taxon_id": "233262", "uniprot_accession": "P0C6T8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bovine coronavirus (strain 98TXSF-110-LUN)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-nab-pf16251.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-nab-pf16251.yaml" } ], "pfam_ids": [ "PF01661", "PF01831", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11963", "PF16251", "PF16348", "PF19213", "PF19217", "PF19218", "PF22104" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMVDCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRGCNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQSRKFIVPWVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYALIRGYRGVKPLLYVDQYGCDYTGGLADGLEAYADKTLQEMKALFPIWSQELPFDVTVAWHVVRDPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILRQHNLVDIMSCFYMEADAVVNAFYGVDLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYETGDLLAQSSGVLPVNPVLHTKSAAGYGGFGCKDSFTLYGQTVVYFGGCVYWSPARNIWIPILKSSVKSYDGLVYTGVVGCKAIVKETNLICKALYLDYVQHKCGNLHQRELLGVSDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKICHAVVSKSKELLDVSLDSLSAAIHYLNSKIVDLAQHFSDFGTSFVSKIVHFFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKNIPRYASAVAQAFRSVAKVVLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCGYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVVDAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLEESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEMSDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTVDGVNFTNRFVPVGENFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANDLSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFLLSLVCFIGLWCLMPTYTVHKSDFQLPVYTSYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVVDQDLGSTVFNVPTKVLRYGYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFAMADGSPQPYCYTEGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFAYCRRLGTSVRSDGTFEEMALTTFMITKDSYCKLKNSLSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLVIDALASMTGVSLETLLAAIKRLKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLVKGIVCWIMASTFLFSCIITAFVKWTMFMYVTTNMLSITFCALCVISLAMLLVKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVEYTYTDEVIYGMLLLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILLMLASLFGTYTWTTALSMAAAKVIAKWVAVNVLYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARSSGSANQQQLKQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQTIQDSDGTNKQLNEISDDCNWPLVIIANRHNEVSATVLQNNELMPAKLKTQVVNSGPDQTCNTPTQCYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGIKDPVSYVLTHDVCQVCGFWRDGSCSCVSTDTTVQSKDTNFLNGFGVRV", "sequence_length": 4383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0baf472314e898303e4ef5af469a7a1df5b0e3b4016224acbc79605027811799", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6T9.json", "taxon_id": "233264", "uniprot_accession": "P0C6T9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human coronavirus HKU1 (isolate N2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp4-c-pf16348.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16348", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp4-c-pf16348.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp7-pf08716.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08716", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp7-pf08716.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp8-pf08717.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp8-pf08717.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp9-pf08710.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp9-pf08710.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/b-cov-a-nsp1-pf11963.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11963", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/b-cov-a-nsp1-pf11963.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp10-pf09401.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp10-pf09401.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp3-c-pf19218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp3-c-pf19218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp4-n-pf19217.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp4-n-pf19217.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp6-pf19213.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp6-pf19213.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-peptidase-pf08715.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-peptidase-pf08715.yaml" } ], "pfam_ids": [ "PF01661", "PF01831", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11963", "PF16251", "PF16348", "PF19213", "PF19217", "PF19218", "PF22104" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKIDCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPLHSLGGFPKGYVMGLFRSYKTKRYVVHHLSMTTSTTNFGEDFLGWIVPFGFMPSYVHKWFQFCRLYIEESDLIISNFKFDDYDFSVEDAYAEVHAEPKGKYSQKAYALLRQYRGIKPVLFVDQYGCDYSGKLADCLQAYGHYSLQDMRQKQSVWLANCDFDIVVAWHVVRDSRFVMRLQTIATICGIKYVAQPTEDVVDGAVVIREPVHLLSADAIVLKLPSLMKVMTHMDDFSIKSIYNVDLCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSSEVKAQSSGVIPENPVLFTNSTDTVNPDSFNLYGYSVTPFGSCIYWSPRPGLWIPIIKSSVKSYDDLVYSGVVGCKSIVKETALITHALYLDYVQCKCGNLEQNHILGVNNSWCRQLLLNRGDYNMLLKNIDLFVKRRADFACKFAVCGDGFVPFLLDGLIPRSYYLIQSGIFFTSLMSQFSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDASAPATGWLLYQLLNGLFVVSQANFNFVALIPDYAKILVNKFYTFFKLLLECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLIPGFVLPCNAQEQQIYFFEGVAESVIVEDDVIENVKSSLSSYEYCQPPKSVEKICIIDNMYMGKCGDKFFPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEEIVTGDNDDQIVVTGDDVDDIESVYDFDTYKALLVFNDVYNDALFVSYGSSVETETYFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIPKAIVLPQGGYVADFAYWFLNQFDINAYANWCCLKCGFSFDLNGLDAVFFYGDIVSHVCKCGHNMTLIAADLPCTLHFSLFDDNFCAFCTPKKIFIAACAVDVNVCHSVAVIGDEQIDGKFVTKFSGDKFDFIVGYGMSFSMSSFELAQLYGLCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTKALAVRLTANVGRVIKFETDAYKLFLSGDDCFVSNSSVIQEVLLLRHDIQLNNDVRDYLLSKMTSLPKDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLAKKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLSLADISAVQSSFGFDQQQLLAYYNFLTVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQHINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAICELELICDCGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIVHCTKLNVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTKPIIKAQFKPFAKVDGVYTNFKLVGHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFKGCETFGKPVIWLCHDEASLNSLTYFNKPSFKSENRYSVLSVDSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRDDNQTLLVPKIFKARAIEFYGFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNLFCLALKNAFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTICDFYSKLGVGFTSHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDADRANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKACVKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFILLWALLPTYSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSFYYHNSMDCPIVVAVMDEDIGSTMFNVPTKVLRHGFHVLHFLTYAFASDSVQCYTPHIQISYNDFYASGCVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVISEGIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFYQFFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVIANHVLWLFSYCRKIGVNVCNDSTFEETSLTTFMITKDSYCRLKNSVSDVAYNRYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVKMVSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLGDFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKADLVLDALASMTGVSIETLLAAIKRLYMGFQGRQILGSCTFEDELAPSDVYQQLAGVKLQSKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYINTHMIGVTLCVLCFVSFMMLLVKHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGLTYVWLSYFVPAVNFTYVYEVFYGCILCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLFITAFLGTYTWTTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFRMPMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDVKCANVVLLNCLQHLHVASNSRLWQYCSILHNEILSTSDLSVAFDKLAQLLIVLFANPAAVDTKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIKQLEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPALAANTLTIIIPDKQVFDKVVDNVYVAYAGSVWHIQTVQDADGINKQLTDISVDSNWPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNSGSDMNCNIPTQCYYNNGSSGRIVYAVLSDVDGLKYTKIIKDDGNCVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPLGIKDPILYVLTHDVCQVCGFWRDGSCSCVGSGVAVQSKDLNFLNGFGVLV", "sequence_length": 4441, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "46454a6a12fef637220dcb30723d5709ed239f05a21f959a01717bdb527a00cd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6U4.json", "taxon_id": "443240", "uniprot_accession": "P0C6U4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human coronavirus OC43", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/b-cov-a-nsp1-pf11963.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11963", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/b-cov-a-nsp1-pf11963.yaml" } ], "pfam_ids": [ "PF01661", "PF01831", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11963", "PF16251", "PF16348", "PF19213", "PF19217", "PF19218", "PF22104" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMVDCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRGCNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQSRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYALIRGYRGVKPLLYVDQYGCDYTGSLADGLEAYADKTLQEMKALFPTWSQELPFDVIVAWHVVRDPRYVMRLQSAATICSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILRQYNLFDIMSHFYMEADTVVNAFYGVALKDCGFVMQFGYIDCEQDSCDFKGWIPGNMIDGFACTTCGHVYEVGDLIAQSSGVLPVNPVLHTKSAAGYGGFGCKDSFTLYGQTVVYFGGCVYWSPARNIWIPILKSSVKSYDSLVYTGVLGCKAIVKETNLICKALYLDYVQHKCGNLHQRELLGVSDVWHKQLLINRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKLCHAVVSKSKELLDVSLDSLGAAIHYLNSKIVDLAQHFSDFGTSFVSKIVHFFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKNIPRYASAVAQAFQSVAKVVLDSLRVTFIDGLSCFKIGRRRICLSGRKIYEVERGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCGYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDDHVGLLDQAWRVPCAGRRVTFKEQPTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPEDDDFLEESDVEEDDVEGEETDLTITSAGQPCVASEQEESSEVLEDTLDDGPSVETSDSQVEEDVEMSDFVDLESVIQDYENVCFEFYTTEPEFVKVLGLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVLPQGGYVADFAYWFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHICKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRIVYKAACVVDVNDSHSMAVVDGKQIDDHRITSITSDKFDFIIGHGMSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLISAGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAARLSFNVGRSIVYETDANKLILINDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVLPEGWRVVNKFYQINGVRTVKYFECTGGIDICSQDKVFGYVQQGIFNKATVAQIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSLHLTFKIVQWQEAWLEFRSGRPARFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKCGVKQEQRTGLDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKLPKGVGSANIFIGDNVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTVCDSLNSKLGFDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYERGCITFGKPVIWLSHEKASLNSLTYFNRPLLVDDNKFDVLKVDDVDDSGDSSESGAKETKEINIIKLSGVKKPFKVEDSVIVNDDTSETKYVKSLSIVDVYDMWLTGCKYVVRTANALSRAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPAVNVVKAVRNKTSACFNFIKWLFVLLFGWIKISADNKVIYTTEIASKLTCKLVALAFKNAFLTFKWSMVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSFRLLVALANMLPAHVFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCSMRLFYDRDGQRIYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQIYKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKSDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFVLSLVCFIGLWCLMPTYTVHKSDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVIDQDFGSTVFNVPTKVLRYGYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFTMADGSPQPYCYTDGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRVVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSVVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYIAVVVSNHAFWVFSYCRKLGTSVRSDGTFEEMALTTFMITKDSYCKLKNSLSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMRGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPIQDYIQSVNFLAWLYAAILNNCNWFIQSDKCSVEDFNVWALSNGFSQVKSDLVIDALASMTGVSLETLLAAIKRLKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLFKGTVCWIMASTFLFSCIITAFVKWTMFMYVTTNMFSITFCALCVISLAMLLVKHKHLYLTMYITPVLFTLLYNNYLVVYKHTFRGYVYAWLSYYVPSVEYTYTDEVIYGMLLLVGMVFVTLRSINHDLFSFIMFVGRLISVFSLWYKGSNLEEEILLMLASLFGTYTWTTVLSMAVAKVIAKWVAVNVLYFTDIPQIKIVLLCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWHYCSTLHNEILATSDLSVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARFSGSANQQQLKQLEKACNIAKSAYERDRAVAKKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLNIIVPDKSVYDQIVDNIYVTYAGNVWQIQTIQDSDGTNKQLNEISDDCNWPLVIIANRYNEVSATVLQNNELMPAKLKIQVVNSGPDQTCNTPTQCYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVVLELDPPCKFTVQDAKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGIKDPVSYVLTHDVCRVCGFWRDGSCSCVSTDTTVQSKDTNFLNGFGVRV", "sequence_length": 4383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "77e1c894066637a2d10c47e433f4403665030e09765ecd3cbbe944d76807a6b3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6U7.json", "taxon_id": "31631", "uniprot_accession": "P0C6U7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human coronavirus HKU1 (isolate N2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-methyltr-2-pf06460.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06460", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-methyltr-2-pf06460.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp13-1b-pf20631.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20631", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp13-1b-pf20631.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp13-stalk-pf20633.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20633", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp13-stalk-pf20633.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp13-zbd-pf20632.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20632", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp13-zbd-pf20632.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp15-c-pf19215.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19215", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp15-c-pf19215.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp15-m-pf19216.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19216", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp15-m-pf19216.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp15-n-pf19219.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19219", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp15-n-pf19219.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-rpol-n-pf06478.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06478", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-rpol-n-pf06478.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/b-cov-a-nsp1-pf11963.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11963", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/b-cov-a-nsp1-pf11963.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-exon-pf06471.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06471", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-exon-pf06471.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF01831", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11963", "PF13087", "PF13604", "PF16251", "PF16348", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633", "PF22104" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKIDCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPLHSLGGFPKGYVMGLFRSYKTKRYVVHHLSMTTSTTNFGEDFLGWIVPFGFMPSYVHKWFQFCRLYIEESDLIISNFKFDDYDFSVEDAYAEVHAEPKGKYSQKAYALLRQYRGIKPVLFVDQYGCDYSGKLADCLQAYGHYSLQDMRQKQSVWLANCDFDIVVAWHVVRDSRFVMRLQTIATICGIKYVAQPTEDVVDGAVVIREPVHLLSADAIVLKLPSLMKVMTHMDDFSIKSIYNVDLCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSSEVKAQSSGVIPENPVLFTNSTDTVNPDSFNLYGYSVTPFGSCIYWSPRPGLWIPIIKSSVKSYDDLVYSGVVGCKSIVKETALITHALYLDYVQCKCGNLEQNHILGVNNSWCRQLLLNRGDYNMLLKNIDLFVKRRADFACKFAVCGDGFVPFLLDGLIPRSYYLIQSGIFFTSLMSQFSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDASAPATGWLLYQLLNGLFVVSQANFNFVALIPDYAKILVNKFYTFFKLLLECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLIPGFVLPCNAQEQQIYFFEGVAESVIVEDDVIENVKSSLSSYEYCQPPKSVEKICIIDNMYMGKCGDKFFPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEEIVTGDNDDQIVVTGDDVDDIESVYDFDTYKALLVFNDVYNDALFVSYGSSVETETYFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIPKAIVLPQGGYVADFAYWFLNQFDINAYANWCCLKCGFSFDLNGLDAVFFYGDIVSHVCKCGHNMTLIAADLPCTLHFSLFDDNFCAFCTPKKIFIAACAVDVNVCHSVAVIGDEQIDGKFVTKFSGDKFDFIVGYGMSFSMSSFELAQLYGLCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTKALAVRLTANVGRVIKFETDAYKLFLSGDDCFVSNSSVIQEVLLLRHDIQLNNDVRDYLLSKMTSLPKDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLAKKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLSLADISAVQSSFGFDQQQLLAYYNFLTVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQHINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAICELELICDCGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIVHCTKLNVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTKPIIKAQFKPFAKVDGVYTNFKLVGHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFKGCETFGKPVIWLCHDEASLNSLTYFNKPSFKSENRYSVLSVDSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRDDNQTLLVPKIFKARAIEFYGFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNLFCLALKNAFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTICDFYSKLGVGFTSHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDADRANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKACVKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFILLWALLPTYSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSFYYHNSMDCPIVVAVMDEDIGSTMFNVPTKVLRHGFHVLHFLTYAFASDSVQCYTPHIQISYNDFYASGCVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVISEGIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFYQFFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVIANHVLWLFSYCRKIGVNVCNDSTFEETSLTTFMITKDSYCRLKNSVSDVAYNRYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVKMVSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLGDFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKADLVLDALASMTGVSIETLLAAIKRLYMGFQGRQILGSCTFEDELAPSDVYQQLAGVKLQSKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYINTHMIGVTLCVLCFVSFMMLLVKHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGLTYVWLSYFVPAVNFTYVYEVFYGCILCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLFITAFLGTYTWTTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFRMPMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDVKCANVVLLNCLQHLHVASNSRLWQYCSILHNEILSTSDLSVAFDKLAQLLIVLFANPAAVDTKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIKQLEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPALAANTLTIIIPDKQVFDKVVDNVYVAYAGSVWHIQTVQDADGINKQLTDISVDSNWPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNSGSDMNCNIPTQCYYNNGSSGRIVYAVLSDVDGLKYTKIIKDDGNCVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPLGIKDPILYVLTHDVCQVCGFWRDGSCSCVGSGVAVQSKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLSKYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYSVILSTCDGLKFTDESFYKNMYLKSAVMQSVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATNHKYVLSVSPYVCNAPNCDVSDVTKLYLGGMSYYCENHKPHYSFKLVMNGMVFGLYKQSCTGSPYIDDFNKIASCKWTEVDDYVLANECIERLKLFAAETQKATEEAFKQSYASATIQEIVSDREIILCWETGKVKPPLNKNYVFTGYHFTSTGKTVLGEYVFDKSELTNGVYYRATTTYKLSIGDVFVLTSHSVANLSAPTLVPQENYASIRFSSVYSVPLLFQTNVANYQHIGMKRYCTVQGPPGTGKSHLAIGLAVYYYTARVVYTAASHAAVDALCEKAYKFLNINDCTRIIPAKVRVDCYDKFKINDTTCKYVFTTINALPELVTDIVVVDEVSMLTNYELSVINARVKAKHYVYIGDPAQLPAPRVLLSKGSLEPRHFNSITKIMCCLGPDIFLGNCYRCPKEIVETVSALVYDNKLKAKNDNSSLCFKVYFKGQTTHESSSAVNIQQIYLISKFLKANPVWNSAVFISPYNSQNYVAKRILGVQTQTVDSAQGSEYDYVIYSQTAETAHSINVNRFNVAITRAKKGIFCVMSNMQLFESLNFITLPLDKIQNQTLSRLHCTTNLFKDCSKNFLGYHPAHAPSFLSVDDKYKVNEDLAVCLNICEPVLTYSRLISLMGFKLDLTLDGYSKFFITKDEAIKRVRGWVGFDVEGAHATRDNIGTNFPLQIGFSTGVDFVVEATGLFAERDCYIFKRTVAKAPPGDNFKHLIPLMSKGQKWDVVRIRIVQMLSDYLLDLSDSVVFITWSASFELTCLRYFAKLGRELNCDVCPNRATCYNSRTGYYGCWRHSYTCDYVYNPLIVDIQQWGYTGSLTSNHDIICNVHKGAHVASSDAIMTRCLAIYDCFCKSVNWNLEYPIISNEVSINTSCRLLQRVMLKAAMLCNRYNLCYDIGNPKGIACVKDYEFKFYDASPVVKSVKQLFYVYDVHKDNFKDGLCMFWNCNVDKYPSNSIVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTNPFTRTVFENLKPMPFFYYSDTPCVYVDGLESKQVDYVPLRSATCITRCNLGGAVCSKHAEDYCKYLESYNVATTAGFTFWVYKTFDFYNLWNTFTMLQSLENVIYNLVNAGHYDGRIGELPCAIMNDKVVVKINNVDTVIFKNNTSLPTNIAVELFTKRSIRHHPELKILRNLNIDICWKHVLWDYVKDSLFCSSTYGVCKYTDLNFIENLNVLFDGRDNGALEAFRKARNGVFISTGKLSSLSMIKGPQRADLNGVIVDKVGELNVEFWFAMRKDGDDVIFSRADSLSPSHYWSPQGNLGGNCAGNASGNDALARFTIFTQSRVLSTFEPRSDLERDFIDMEDSLFIAKYGLEDYAFDHIVYGSFNYKVIGGLHLLIGLFRRLKKSNLVIQEFLQYDSSIHSYFITDQECGSSKSVCTVIDLLLDDFVVIVKSLNLNCVSKVVNINVDFKDFQFMLWCNDNKIMTFYPKMQATSDWKPGYSMPVLYKYLNVPLERVSLWNYGKAINLPTGCMMNVAKYTQLCQYLNTTTLAVPVNMRVLHLGAGSDKEVAPGSAVLRQWLPSGSILVDNDLNPFVSDSLVTYFGDCMTLPFDCHWDLIISDMYDPLTKNIGDYNVSKDGFFTYICYLIRDKLSLGGSVAIKITEFSWNADLYKLMSYFAFWTVFCTNVNASSSEGFLIGINYLGKSCFEIDGNVMHANYLFWRNSTTWNGGAYSLFDMSKFSLKLAGTAVVNLRPDQLNDLVYSLIERGKLLVRDTRKEIFVGDSLVNTC", "sequence_length": 7152, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4d344268725f1a959f47ad9d2e211b46167e51ff43c2c9aaca990ae456bda1af", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6X3.json", "taxon_id": "443240", "uniprot_accession": "P0C6X3", "uniprot_release": "2026_03" } ], "pfam_id": "PF11963", "short_name": "B-CoV_A_NSP1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11964", "short_name": "SpoIIAA-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. indica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cobn-mg-chel-pf02514.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02514", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cobn-mg-chel-pf02514.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3479-pf11965.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11965", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3479-pf11965.yaml" } ], "pfam_ids": [ "PF02514", "PF11965" ], "protein_name": "Magnesium-chelatase subunit ChlH, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSLVSTPFTTATGVQKKLGAPVPLHSFLLSRRQPAAGAGRGRAAAAAIRCAVAGNGLFTQTKPEVRRVVPPEGDASRRGVPRVKVVYVVLEAQYQSSVTAAVRELNADPRRAAGFEVVGYLVEELRDEETYKTFCADLADANVFIGSLIFVEELALKVKDAVEKERDRMDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKRKKNSGGFADSMLKLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMIAVSYVPALKGADIKYDDPVLFLDAGIWHPLAPTMYDDVKEYLNWYGTRRDTNDKLKDPNAPVIGLVLQRSHIVTGDDGHYVAVIMELEAKGAKVIPIFAGGLDFSGPTQRYLVDPITGKPFVNAVVSLTGFALVGGPARQDHPKAIAALQKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGMEPIVFAGRDPRTGKSHALHKRVEQLCTRAIRWAELKRKTKEEKKLAITVFSFPPDKGNVGTAAYLNVFNSIYSVLQDLKKDGYNVEGLPDTAEALIEEVIHDKEAQFNSPNLNVAYRMNVREYQSLTSYASLLEENWGKPPGNLNSDGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTFVEKIFQADAVLHFGTHGSLEFMPGKQVGMSDACYPDSLIGNIPNIYYYAANNPSEATVAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGPQIVSSIISTAKQCNLDKDVPLPEEGVELPPNERDLIVGKVYAKIMEIESRLLPCGLHVIGEPPSAIEAVATLVNIASLDRPEDEIYSLPNILAQTVGRNIEDVYRGSDKGILADVELLRQITEASRGAITAFVERTTNNKGQVVDVTNKLSTMLGFGLSEPWVQHLSKTKFIRADREKLRTLFTFLGECLKLIVADNELGSLKLALEGSYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAALKSAKIVVDRLLERQKVDNGGKYPETIALVLWGTDNIKTYGESLAQVLWMIGVRPVADTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFINQMNLLDRAVKMVAELDEPEEMNYVRKHAQEQARELGVSLREAATRVFSNASGSYSSNVNLAVENASWTDEKQLQDMYLSRKSFAFDCDAPGAGMREQRKTFELALATADATFQNLDSSEISLTDVSHYFDSDPTKLVQGLRKDGRAPSSYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMMKSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANATFIEDEAMRKRLMDTNPNSFRKLVQTFLEASGRGYWETSEENLEKLRELYSEVEDKIEGIDR", "sequence_length": 1387, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4dca6c9f4a096f3335e719b1efdb6de76949b8cb9dc084f21c38df357799ac9c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B8ANF1.json", "taxon_id": "39946", "uniprot_accession": "B8ANF1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cobn-mg-chel-pf02514.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02514", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cobn-mg-chel-pf02514.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3479-pf11965.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11965", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3479-pf11965.yaml" } ], "pfam_ids": [ "PF02514", "PF11965" ], "protein_name": "Magnesium-chelatase subunit ChlH, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSLVSTPFTTATGVQKKLGAPVPLHSFLLSRRQPAAGAGRGRAAAAAIRCAVAGNGLFTQTKPEVRRVVPPEGDASRRGVPRVKVVYVVLEAQYQSSVTAAVRELNADPRRAAGFEVVGYLVEELRDEETYKTFCADLADANVFIGSLIFVEELALKVKDAVEKERDRMDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKRKKNSGGFADSMLKLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMIAVSYVPALKGADIKYDDPVLFLDAGIWHPLAPTMYDDVKEYLNWYGTRRDTNDKLKDPNAPVIGLVLQRSHIVTGDDGHYVAVIMELEAKGAKVIPIFAGGLDFSGPTQRYLVDPITGKPFVNAVVSLTGFALVGGPARQDHPKAIAALQKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGMEPIVFAGRDPRTGKSHALHKRVEQLCTRAIRWAELKRKTKEEKKLAITVFSFPPDKGNVGTAAYLNVFNSIYSVLQDLKKDGYNVEGLPDTAEALIEEVIHDKEAQFNSPNLNVAYRMNVREYQSLTSYASLLEENWGKPPGNLNSDGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTFVEKIFQADAVLHFGTHGSLEFMPGKQVGMSDACYPDSLIGNIPNIYYYAANNPSEATVAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGPQIVSSIISTAKQCNLDKDVPLPEEGVELPPNERDLIVGKVYAKIMEIESRLLPCGLHVIGEPPSAIEAVATLVNIASLDRPEDEIYSLPNILAQTVGRNIEDVYRGSDKGILADVELLRQITEASRGAITTFVERTTNNKGQVVDVTNKLSTMLGFGLSEPWVQHLSKTKFIRADREKLRTLFTFLGECLKLIVADNELGSLKLALEGSYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAALKSAKIIVDRLLERQKVDNGGKYPETIALVLWGTDNIKTYGESLAQVLWMIGVRPVADTFGRVNRVEPVSLEELGRPRIDVVINCSGVFRDLFINQMNLLDRAVKMVAELDEPEEMNYVRKHAQEQARELGVSLREAATRVFSNASGSYSSNVNLAVENASWTDEKQLQDMYLSRKSFAFDCDAPGAGMREQRKTFELALATADATFQNLDSSEISLTDVSHYFDSDPTKLVQGLRKDGRAPSSYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMMKSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANATFIEDEAMRKRLMDTNPNSFRKLVQTFLEASGRGYWETSEENLEKLRELYSEVEDKIEGIDR", "sequence_length": 1387, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ccba045a681f6b408ac91bdefb0f23d18268045f2aff12c1a361118a522e945d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q10M50.json", "taxon_id": "39947", "uniprot_accession": "Q10M50", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/magnesium-chelatase-complex-go0010007.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010007", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/magnesium-chelatase-complex-go0010007.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01363", "PF11409", "PF11979" ], "protein_name": "Zinc finger FYVE domain-containing protein 9", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "fd23907b3297c996940c0c8609be3b36526e4641f0a9e62bf643ec6acd1ffd1e", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MENYFQAEAYNLDKVLDEFEQNEDETVSSTLLDTKWNKILDPPSHRLSFNPTLASVNESAVSNESQPQLKVFSLAHSAPLTTEEEDHCANGQDCNLNPEIATMWIDENAVAEDQLIKRNYSWDDQCSAVEVGEKKCGNLACLPDEKNVLVVAVMHNCDKRTLQNDLQDCNNYNSQSLMDAFSCSLDNENRQTDQFSFSINESTEKDMNSEKQMDPLNRPKTEGRSVNHLCPTSSDSLASVCSPSQLKDDGSIGRDPSMSAITSLTVDSVISSQGTDGCPAVKKQENYIPDEDLTGKISSPRTDLGSPNSFSHMSEGILMKKEPAEESTTEESLRSGLPLLLKPDMPNGSGRNNDCERCSDCLVPNEVRADENEGYEHEETLGTTEFLNMTEHFSESQDMTNWKLTKLNEMNDSQVNEEKEKFLQISQPEDTNGDSGGQCVGLADAGLDLKGTCISESEECDFSTVIDTPAANYLSNGCDSYGMQDPGVSFVPKTLPSKEDSVTEEKEIEESKSECYSNIYEQRGNEATEGSGLLLNSTGDLMKKNYLHNFCSQVPSVLGQSSPKVVASLPSISVPFGGARPKQPSNLKLQIPKPLSDHLQNDFPANSGNNTKNKNDILGKAKLGENSATNVCSPSLGNISNVDTNGEHLESYEAEISTRPCLALAPDSPDNDLRAGQFGISARKPFTTLGEVAPVWVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCSLKCKLLYMDRKEARVCVICHSVLMNAQAWENMMSASSQSPNPNNPAEYCSTIPPLQQAQASGALSSPPPTVMVPVGVLKHPGAEVAQPREQRRVWFADGILPNGEVADAAKLTMNGTSSAGTLAVSHDPVKPVTTSPLPAETDICLFSGSITQVGSPVGSAMNLIPEDGLPPILISTGVKGDYAVEEKPSQISVMQQLEDGGPDPLVFVLNANLLSMVKIVNYVNRKCWCFTTKGMHAVGQSEIVILLQCLPDEKCLPKDIFNHFVQLYRDALAGNVVSNLGHSFFSQSFLGSKEHGGFLYVTSTYQSLQDLVLPTPPYLFGILIQKWETPWAKVFPIRLMLRLGAEYRLYPCPLFSVRFRKPLFGETGHTIMNLLADFRNYQYTLPVVQGLVVDMEVRKTSIKIPSNRYNEMMKAMNKSNEHVLAGGACFNEKADSHLVCVQNDDGNYQTQAISIHNQPRKVTGASFFVFSGALKSSSGYLAKSSIVEDGVMVQITAENMDSLRQALREMKDFTITCGKADAEEPQEHIHIQWVDDDKNVSKGVVSPIDGKSMETITNVKIFHGSEYKANGKVIRWTEVFFLENDDQHNCLSDPADHSRLTEHVAKAFCLALCPHLKLLKEDGMTKLGLRVTLDSDQVGYQAGSNGQPLPSQYMNDLDSALVPVIHGGACQLSEGPVVMELIFYILENIV", "sequence_length": 1425, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "fd23907b3297c996940c0c8609be3b36526e4641f0a9e62bf643ec6acd1ffd1e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O95405.json", "taxon_id": "9606", "uniprot_accession": "O95405", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/fyve-domain-found-in-endofin-and-similar-proteins-endofin-also-termed--cd15729.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd15729", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/fyve-domain-found-in-endofin-and-similar-proteins-endofin-also-termed--cd15729.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/smad-anchor-for-receptor-activation-like-c-terminal-ipr022557.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022557", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/smad-anchor-for-receptor-activation-like-c-terminal-ipr022557.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sara-c-pf11979.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sara-c-pf11979.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-30-500-40-3-30-500-40.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.500.40", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-30-500-40-3-30-500-40.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/domain-of-unknown-function-duf3480-n-terminal-subdomain-3-30-1360-220.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.1360.220", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/domain-of-unknown-function-duf3480-n-terminal-subdomain-3-30-1360-220.yaml" } ], "pfam_ids": [ "PF01363", "PF11979" ], "protein_name": "Zinc finger FYVE domain-containing protein 16", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSYFKAAVSDLDKLLDDFEQNPDEQDYLQDVQNAYDSNHCSVSSELASSQRTSLLPKDQECVNSCASSETSYGTNESSLNEKTLKGLTSIQNEKNVTGLDLLSSVDGGTSDEIQPLYMGRCSKPICDLISDMGNLVHATNSEEDIKKLLPDDFKSNADSLIGLDLSSVSDTPCVSSTDHDSDTVREQQNDISSELQNREIGGIKELGIKVDTTLSDSYNYSGTENLKDKKIFNQLESIVDFNMSSALTRQSSKMFHAKDKLQHKSQPCGLLKDVGLVKEEVDVAVITAAECLKEEGKTSALTCSLPKNEDLCLNDSNSRDENFKLPDFSFQEDKTVIKQSAQEDSKSLDLKDNDVIQDSSSALHVSSKDVPSSLSCLPASGSMCGSLIESKARGDFLPQHEHKDNIQDAVTIHEEIQNSVVLGGEPFKENDLLKQEKCKSILLQSLIEGMEDRKIDPDQTVIRAESLDGGDTSSTVVESQEGLSGTHVPESSDCCEGFINTFSSNDMDGQDLDYFNIDEGAKSGPLISDAELDAFLTEQYLQTTNIKSFEENVNDSKSQMNQIDMKGLDDGNINNIYFNAEAGAIGESHGINIICEIVDKQNTIENGLSLGEKSTIPVQQGLPTSKSEITNQLSVSDINSQSVGGARPKQLFSLPSRTRSSKDLNKPDVPDTIESEPSTADTVVPITCAIDSTADPQVSFNSNYIDIESNSEGGSSFVTANEDSVPENTCKEGLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISKAQAFERMMSPTGSNLKSNHSDECTTVQPPQENQTSSIPSPATLPVSALKQPGVEGLCSKEQKRVWFADGILPNGEVADTTKLSSGSKRCSEDFSPLSPDVPMTVNTVDHSHSTTVEKPNNETGDITRNEIIQSPISQVPSVEKLSMNTGNEGLPTSGSFTLDDDVFAETEEPSSPTGVLVNSNLPIASISDYRLLCDINKYVCNKISLLPNDEDSLPPLLVASGEKGSVPVVEEHPSHEQIILLLEGESFHPVTFVLNANLLVNVKFIFYSSDKYWYFSTNGLHGLGQAEIIILLLCLPNEDTIPKDIFRLFITIYKDALKGKYIENLDNITFTESFLSSKDHGGFLFITPTFQKLDDLSLPSNPFLCGILIQKLEIPWAKVFPMRLMLRLGAEYKAYPAPLTSIRGRKPLFGEIGHTIMNLLVDLRNYQYTLHNIDQLLIHMEMGKSCIKIPRKKYSDVMKVLNSSNEHVISIGASFSTEADSHLVCIQNDGIYETQANSATGHPRKVTGASFVVFNGALKTSSGFLAKSSIVEDGLMVQITPETMNGLRLALREQKDFKITCGKVDAVDLREYVDICWVDAEEKGNKGVISSVDGISLQGFPSEKIKLEADFETDEKIVKCTEVFYFLKDQDLSILSTSYQFAKEIAMACSAALCPHLKTLKSNGMNKIGLRVSIDTDMVEFQAGSEGQLLPQHYLNDLDSALIPVIHGGTSNSSLPLEIELVFFIIEHLF", "sequence_length": 1539, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6fd08e973b028f5201d66ca6378737ad27665d499f1d119e217cba73a7501a8b", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Z3T8.json", "taxon_id": "9606", "uniprot_accession": "Q7Z3T8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/fyve-domain-found-in-endofin-and-similar-proteins-endofin-also-termed--cd15729.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd15729", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/fyve-domain-found-in-endofin-and-similar-proteins-endofin-also-termed--cd15729.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/smad-anchor-for-receptor-activation-like-c-terminal-ipr022557.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022557", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/smad-anchor-for-receptor-activation-like-c-terminal-ipr022557.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sara-c-pf11979.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sara-c-pf11979.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-30-500-40-3-30-500-40.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.500.40", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-30-500-40-3-30-500-40.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/domain-of-unknown-function-duf3480-n-terminal-subdomain-3-30-1360-220.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.1360.220", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/domain-of-unknown-function-duf3480-n-terminal-subdomain-3-30-1360-220.yaml" } ], "pfam_ids": [ "PF01363", "PF11979" ], "protein_name": "Zinc finger FYVE domain-containing protein 16", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSYFKAAVSGLDKLLDDFEQNPDKQDYLPDAYAFNQCSVSSESASPQLALLSKDQRCISTCASSEACCEDANETFLEGKIHEGLTSRPNEKNVAGLDLLSSVDASTSDEIQPSCMRRCSKPVCDLISDMGNLVHATNSEEDIKQLLPDDPKSSADTLITLDSSSVSEALTVSSVDCGSNAVREEQNNINAGIKNRDISIKELGVKVDMALFDSCKYNRTENLKDKIISNELETVDFDMPSVLMEQSSEMSNTKDNPQYKRLPCELLKDDGCLAEEKVAVAVNNTECLEEGGGSNTIAMPCKLPENEGISPSDPASKDENFKLPDFPLQENRTSVFMKQTVKEDSRNLDLKDNNDIVHVSGDDVPPSLSCLSLSGSLCGSLIHNNEHSDILPPNESEGQNNDAVTIHEEIQKSDVLDGETDLSKKETCRSIFLQPVNEKKGEGKVEVEEMVISGESLESPEDASSAAAAGSPVALSAASVPEAPGPCEGLTFPSSDMDGQELDYFNIDESMRSGILISDAELDAFLKEQCLSNSNTMSAGENVNDSQLQMNQITMKGLHDENAGDIYFNAEAGAAGENGGVGNCETSDKENTENNGLSIGEKGAIPTERELSACQPDIRDELPVPSIKTQAVGGARPKQLLSLPPGTRSSKELNKPDVVDVPESEPCTANATAVSTCSADHIPDSQVSFNSNYIDIESNFEDGSSFVTANKDSLPENKRKESLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVICYETINKAQAFERMMSPGGSCLKSNHSNECATDQPLQETQTSSTPSPTTLPISALKQPNVEGPCSKEQKRVWFADGILPNGEVADTTKLSSGSKRCSDDFSPVLPDVPTMINKVDRTHSPTVEKPNNGLGDIIRSEISQSPTCHTAPVERLPGNTGTEGLPMPGPFTLEDDVFVDSEEPSTPTVVPANSGLPVASISDYRLLCSVAKCVCNNISLLPDDDIGLPPLLATSGEDGSVPVVQERPSHEQIILLLEGEGFPPATFVLNANLLVNVKLVLYSSEKYWYFSTNGLHGLGQAEIIVLLQCLPNEDTVPKDIFRLFITIYKDALKGKYIENLDNLTFTESFLNSKDHGGFLFITPTFQNLDGLPVPRSPFLCGILIQKLEIPWAKVFPMRLMLRLGAEYKAYPAPLTSVRGRKPLFGEIGHTIMNLLVDLRNYQYTLHNIDQLLIHMEMGKSCIKIPRKKYSDVMKVIHSSNEHVISIGASFSTEADSHLVCVQSDGVYQTQANSATGQPRKVTGASFVVFNGALKTSSGFLAKSSIVEDGLMVQITPETMEGLRLALREQKDFRIQCGKVDAVDLREYVDICWVDSEERKNKGVISSVDGMSVEGFPSEKIKLETDFETEEKTVKCTEVFYFLKDQDISILSSSYQFAKEIAVACSAALCPHLRTLKSNRMNKIGLRVSIDTDMVEFQAGCEGQLLPQHYLNDLDSALIPVIHGGTSNSSLPLEIELAFFILENLSE", "sequence_length": 1528, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c8b9c77e371af37c51fcb53460f6e06cbd2e889c97bc96830530d61898f63ef6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q80U44.json", "taxon_id": "10090", "uniprot_accession": "Q80U44", "uniprot_release": "2026_03" } ], "pfam_id": "PF11979", "short_name": "SARA_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3481-pf11980.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11980", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3481-pf11980.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/mam-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00740", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/mam-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O14786", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00431", "PF00629", "PF00754", "PF11980" ], "protein_name": "Neuropilin-1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1d2551ade453a33a915755fda9144bb4924af48001cae8fe701fa2663318092c", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVFDGENENGHFRGKFCGKIAPPPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFVPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHSDQITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNGEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPATWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITSSNQGDRNWMPENIRLVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGGKHRENKVFMRKFKIGYSNNGSDWKMIMDDSKRKAKSFEGNNNYDTPELRTFPALSTRFIRIYPERATHGGLGLRMELLGCEVEAPTAGPTTPNGNLVDECDDDQANCHSGTGDDFQLTGGTTVLATEKPTVIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDNHVQLKWSVLTSKTGPIQDHTGDGNFIYSQADENQKGKVARLVSPVVYSQNSAHCMTFWYHMSGSHVGTLRVKLRYQKPEEYDQLVWMAIGHQGDHWKEGRVLLHKSLKLYQVIFEGEIGKGNLGGIAVDDISINNHISQEDCAKPADLDKKNPEIKIDETGSTPGYEGEGEGDKNISRKPGNVLKTLDPILITIIAMSALGVLLGAVCGVVLYCACWHNGMSERNLSALENYNFELVDGVKLKKDKLNTQSTYSEA", "sequence_length": 923, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "1d2551ade453a33a915755fda9144bb4924af48001cae8fe701fa2663318092c", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O14786.json", "taxon_id": "9606", "uniprot_accession": "O14786", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cub-pf00431.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00431", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cub-pf00431.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3481-pf11980.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11980", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3481-pf11980.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/fa58c-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/fa58c-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/fa58c-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01286", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/fa58c-2.yaml" } ], "pfam_ids": [ "PF00431", "PF00629", "PF00754", "PF11980" ], "protein_name": "Neuropilin-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDMFPLTWVFLALYFSRHQVRGQPDPPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEKHDCKYDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSMLYIKFTSDYARQGAGFSLRYEIFKTGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILSLTFHTDMAVAKDGFSARYYLVHQEPLENFQCNVPLGMESGRIANEQISASSTYSDGRWTPQQSRLHGDDNGWTPNLDSNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNGEDWMVYRHGKNHKVFQANNDATEVVLNKLHAPLLTRFVRIRPQTWHSGIALRLELFGCRVTDAPCSNMLGMLSGLIADSQISASSTQEYLWSPSAARLVSSRSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLNGKDWEYIQDPRTQQPKLFEGNMHYDTPDIRRFDPIPAQYVRVYPERWSPAGIGMRLEVLGCDWTDSKPTVETLGPTVKSEETTTPYPTEEEATECGENCSFEDDKDLQLPSGFNCNFDFLEEPCGWMYDHAKWLRTTWASSSSPNDRTFPDDRNFLRLQSDSQREGQYARLISPPVHLPRSPVCMEFQYQATGGRGVALQVVREASQESKLLWVIREDQGGEWKHGRIILPSYDMEYQIVFEGVIGKGRSGEIAIDDIRISTDVPLENCMEPISAFAGENFKVDIPEIHEREGYEDEIDDEYEVDWSNSSSATSGSGAPSTDKEKSWLYTLDPILITIIAMSSLGVLLGATCAGLLLYCTCSYSGLSSRSCTTLENYNFELYDGLKHKVKMNHQKCCSEA", "sequence_length": 931, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7ffab08dc43dc6b495d791cfcccb2bfde31fbf75e2531b0f031c588d71efbf34", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O60462.json", "taxon_id": "9606", "uniprot_accession": "O60462", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3481-pf11980.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11980", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3481-pf11980.yaml" } ], "pfam_ids": [ "PF00431", "PF00629", "PF00754", "PF11980" ], "protein_name": "Neuropilin-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERGLPLLCATLALALALAGAFRSDKCGGTIKIENPGYLTSPGYPHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDLEDRDCKYDYVEVIDGENEGGRLWGKFCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTAPTGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQDSNPPGGVFCRYDRLEIWDGFPEVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQSSISEDFKCMEALGMESGEIHSDQITASSQYGTNWSVERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYRVDISSNGEDWITLKEGNKAIIFQGNTNPTDVVFGVFPKPLITRFVRIKPASWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITASNQGDRNWMPENIRLVTSRTGWALPPSPHPYINEWLQVDLGDEKIVRGVIIQGGKHRENKVFMRKFKIAYSNNGSDWKMIMDDSKRKAKSFEGNNNYDTPELRAFTPLSTRFIRIYPERATHSGLGLRMELLGCEVEVPTAGPTTPNGNPVDECDDDQANCHSGTGDDFQLTGGTTVLATEKPTIIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDSHAQLRWRVLTSKTGPIQDHTGDGNFIYSQADENQKGKVARLVSPVVYSQSSAHCMTFWYHMSGSHVGTLRVKLHYQKPEEYDQLVWMVVGHQGDHWKEGRVLLHKSLKLYQVIFEGEIGKGNLGGIAVDDISINNHIPQEDCAKPTDLDKKNTEIKIDETGSTPGYEEGKGDKNISRKPGNVLKTLDPILITIIAMSALGVLLGAVCGVVLYCACWHNGMSERNLSALENYNFELVDGVKLKKDKLNPQSNYSEA", "sequence_length": 922, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "af9964d3925a0b3890750688a63f60b32d4e74d745d7ef7d10b8c5827379a973", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9QWJ9.json", "taxon_id": "10116", "uniprot_accession": "Q9QWJ9", "uniprot_release": "2026_03" } ], "pfam_id": "PF11980", "short_name": "DUF3481", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11981", "short_name": "DUF3482", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chromohalobacter israelensis (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3483-pf11982.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11982", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3483-pf11982.yaml" } ], "pfam_ids": [ "PF02754", "PF11982", "PF13187" ], "protein_name": "Probable membrane-anchored ferredoxin csal_0991", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDILLPILIFSALALAAIGAVRRIRLWRQGRPSPVPVLRGLAAVPRRYLVDLHHVVARDKVMSNTHVATAGGFVAAMGLAIVVHGLGLAEGVLGWLLLAASATMFAGSLFVARRRRNPPARLSKGPWMRLPKSLMAFSLGIFVVTLPAVGVLPADAGGWLVALVLAAVVAWGLAELVFGMTWGGPMKHAFAGALHLAFHRRPARFSDKRGGEGRSTGLKALDLDDADAPLGVEKPADFTWNQLLGFDACVQCGRCEAVCPAFAAGQPLNPKKLVQDMVVGMVGGSDARYAGSPYPGKPVGEHAGDPHGPIVAREGTALVDAETLWSCTTCRACVEECPMMIEHVDAIVDMRRHLTLEEGATPGKGAEVIDNLIATDNPGGFDPGGRLNWAADLDLPLMADVERAEVLLWLGDGVFDMRNQRTLRALIKVLRAADVDFAVLGNEERDSGDVARRLGDEATFQSLARRNIDTLSRYRFESIVTCDPHSFHVLKNEYGALYPQGQDADYPVWHHSTFINQLIESGRLPLAPGQAQRVTYHDPCYLGRYNGEYEAPRAVLRALGMELVEMQRSGYRSRCCGGGGGAPITDVPGKQRIPDMRMGDVRETQAEQVVVGCPQCTAMLEGVVPPAGNEATAVKDIAEMVAAALDNTPPATPASHDTAASQATEEVLS", "sequence_length": 670, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "739732b0d82fb065921968aed6d38820b9f31a4b21e16fe197304bbdb0b5f126", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1QYW0.json", "taxon_id": "290398", "uniprot_accession": "Q1QYW0", "uniprot_release": "2026_03" } ], "pfam_id": "PF11982", "short_name": "DUF3483", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ftsa-c-pf11983.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11983", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ftsa-c-pf11983.yaml" } ], "pfam_ids": [ "PF02491", "PF11983", "PF14450" ], "protein_name": "Cell division protein FtsA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAREGFFTGLDIGTSSVKVLVAEQRNGELNVIGVSNAKSKGVKDGIIVDIDAAATAIKSAISQAEEKAGISIKSVNVGLPGNLLQVEPTQGMIPVTSDTKEITDQDVENVVKSALTKSMTPDREVITFIPEEFIVDGFQGIRDPRGMMGVRLEMRGLLYTGPRTILHNLRKTVERAGVQVENVIISPLAMVQSVLNEGEREFGATVIDMGAGQTTVATIRNQELQFTHILQEGGDYVTKDISKVLKTSRKLAEGLKLNYGEAYPPLASKETFQVEVIGEVEAVEVTEAYLSEIISARIKHILEQIKQELDRRRLLDLPGGIVLIGGNAILPGMVELAQEVFGVRVKLYVPNQVGIRNPAFAHVISLSEFAGQLTEVNLLAQGAIKGENDLSHQPISFGGMLQKTAQFVQSTPVQPAPAPEVEPVAPTEPMADFQQASQNKPKLADRFRGLIGSMFDE", "sequence_length": 457, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "61cfde727b3aff565a908722b279aa795f2ca57be29535c22ceac00866939d19", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0H2ZPT5.json", "taxon_id": "373153", "uniprot_accession": "A0A0H2ZPT5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterococcus faecalis (strain ATCC 700802 / V583)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ftsa-c-pf11983.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11983", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ftsa-c-pf11983.yaml" } ], "pfam_ids": [ "PF02491", "PF11983", "PF14450" ], "protein_name": "Cell division protein FtsA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKTGMYVGLDIGTTSVKVVVAEYIEGQMNIIGVGNAKSDGLNRGIVVDIDQTVQAIQRAVRQAEEKAGIQIKSVNVGLPANLLEVESCQGMIAVSSESKEITDEDVRNVASAALVRSTPPERQIVAILPQDFTVDGFEGIKDPRGMLGVRMEMFGVVYTGPKTIIHNIRKCVEKAGLGINELVITPLALTETILTDGEKDFGTIVIDMGGGQTTTSVIHDKQLKFTHVNQEGGEFITKDISIVLNTSFNNAEALKINYGDAYPERTSANEEFPVDVIGKSEPVRVDERYLSEIIEARVEQILRKSKEVLDEIDAFELPGGVVLTGGAASMPGIVDLAQEIFEANVKLYVPNHMGLRNPVFANVISIVEYSAQLNDIYHIAKYAIPGEKSKPAQSVAVQQEVRYDTYAEQPQEEYEEFNERESGEKVTGKIKDFFSNIFD", "sequence_length": 440, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "880e5eb939073e6c6bf35db6bbe276f1b5e55e6b30adcbd53f3009b2ead00505", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O07111.json", "taxon_id": "226185", "uniprot_accession": "O07111", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterococcus hirae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ftsa-c-pf11983.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11983", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ftsa-c-pf11983.yaml" } ], "pfam_ids": [ "PF02491", "PF11983", "PF14450" ], "protein_name": "Cell division protein FtsA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKTGMYVGLDIGTTSVKVVVAEYIDSQMNIIGVGNAKSEGINRGIIVDIDKTVQAIQRAVRQAEEKAGIQIKGVSVGLPANLLEVENCQGMIAVNGDSKEITDEDVRNVASAALVRSIPPERQIVSILPQDFTVDGFEGIKDPRGMIGVRLEMYGLLFTGPKTIVHNIRKCVENAGLVVNELVITPLALTETILSDGEKDFGTIVIDMGGGQTTTAVMHDKQLKFTSLDQEGGEFVTKDISIVLNTSFNNAEALKINYGDAYPERTSANEEFPVDVIGQSEPVKVDERYLSEVISARMEQIFNKAKEALDQIEALELPGGIVLTGGAASLPGVVDLAQEIFGVNVKLYVPNQMGLRNPVFTNVISIVDYSANLSEVYQLAKIAVTGETVVAHHTTVEQEVTSYDNDSYDAPEETVYDEPEQKKSDEDVTTKIKGFFSKIFD", "sequence_length": 442, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c35906db1be4539c661d5d2ca618b4ef97717e79b74c4f537ee53ed04cae27fc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O07672.json", "taxon_id": "1354", "uniprot_accession": "O07672", "uniprot_release": "2026_03" } ], "pfam_id": "PF11983", "short_name": "FtsA_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11984", "short_name": "EpsI", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11985", "short_name": "Phage_Mu_Gp27", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11990", "short_name": "DUF3487", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-glutamine-gamma-glutamyltransferase-like-c-terminal-ipr025403.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025403", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-glutamine-gamma-glutamyltransferase-like-c-terminal-ipr025403.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-glutamine-gamma-glutamyltransferase-tgpa-n-terminal-ipr021878.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021878", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-glutamine-gamma-glutamyltransferase-tgpa-n-terminal-ipr021878.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4129-pf13559.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13559", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4129-pf13559.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tgpa-n-pf11992.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11992", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tgpa-n-pf11992.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-10-620-30-3-10-620-30.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.620.30", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-10-620-30-3-10-620-30.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P94476", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01841", "PF11992", "PF13559" ], "protein_name": "Uncharacterized protein YebA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "44fa5108722cf9cdeb4f8584e4c8d299084e9128f80d10660a86fa71bae58a02", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPHDDHKGSRLSLLLFYFLAFLLLWEWLRPLDSFTETKHTGFFSVFIGLTFLLTFFRMRWFVTVPFCVIFTLISIHILFYQGSIFDLSWVSSFLQDVYLNITLIQSGQWNDMIPSFRTLLFFVLLWLLVYLLHYWVIYQRRILFFFLMTVAYITILDTFTPYDATFAVIRIVLIGFFMLGLLYLERIKLMERITLPKTSVLKWFLPLSVLVLAATGFGLAAPKSEPAWPDPVPFLKKITHQDRVSAGESKIGYGNHDESLGGPFQQDATPVFTWQGKERTYFRVETKDTYTGKGWIETDTGMSYQLSNGKVENLWFDHKVATERRTVRVKVDKHYGYNHLMYPIGAETIQPKQAVSLEMNGNTEQISPISEQAGEIRNMGNYTVTYNSPVYKLDELRKVKVRKNSEEYTFSDRYMQLPDSLPERVRTLAIKLTQDHDNMFDKVKAVEDYLGSNAFTYETENVTIPKNDEDYVDQFLFETKMGYCDNFSSAMVVLLRSAGIPARWVKGYTSGEYKEAGNKNGSIYEVTNNNAHSWVEVYFPEQGWVTFEPTKGFTNPAQFTSSDTKDSGSDSSSSPKKAKEKQKEEKKQPQKEEKQKEKREPAVSKKPSASHTNAGAGLYAALAVLAVLLVAAVLLYVFRSLWIPVFAVRKLKRRSDQHAFFEAYGALLKQLKRKGLPKRDSETLRDYAKRIDEKYDIEDMSKLTLSYERALYRNEDSSALWNDSRELWENLIKRRWS", "sequence_length": 737, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "44fa5108722cf9cdeb4f8584e4c8d299084e9128f80d10660a86fa71bae58a02", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P94476.json", "taxon_id": "224308", "uniprot_accession": "P94476", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4129-pf13559.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13559", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4129-pf13559.yaml" } ], "pfam_ids": [ "PF01841", "PF11992", "PF13559" ], "protein_name": "Protein-glutamine gamma-glutamyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNAIPRVALVWLLVAQVLVILPHLAYMPLWIAAMWLGCAAWRVQVFRMRAGYPRAWVKLALALLAGAGVWLSRGSLVGLDAGAVLLIAAFILKLVEMKTRRDALVLVFLGFFAVVVGYLFDDGFLAALYSLLPVTALLAALIGLQQSAFASRPWPTLRLAGGLLLQALPLMLLLFLFFPRLGPLWSLPMPGNKGVTGLSESMAPGDIAELGRSAELAFRVRFEGALPPREQLYWRALTMERFDGRRWAQAPQWSGEDALHWQKRGPELRYDVIMQPSSQPWLFALDVAQTDQTDTRLMSDFHLQRRQPVEQRLFYRVSSWPQALRESSIDPRTRWRNLQLPMHGNPRARALADELRQAHAQPQALVAALLQRFNHEPFAYTLKPPATGADGVDDFLFDTRSGFCAHYAGAMAFVLRAAGIPARVVAGYQGGELNPAGNYLLVHQFDAHAWVEYWQPEQGWLSVDPTYQVAPERIEQGLEQALAGDSEYLADAPLSPLRYRGLPWLNDMRLAWDSLNYGWQRWVLAYQGEQQGAFLQRWFGGLDPTRLGLLLGAAAILSVGLLALFLLKPWQGRGDLRSRQLRRFERLLEMHGLRRSPGEGLRSYGERAARVLPAQAPAIAAFVGAFEAQRYGHGGADDPGLRLRALRRALPWRLVRTPTRDGRGEEQA", "sequence_length": 668, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0ef035cbbcb6d05ceb44de0a79c0296ec1e93fafd3fff0368a8c98d6c7a80252", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HZX3.json", "taxon_id": "208964", "uniprot_accession": "Q9HZX3", "uniprot_release": "2026_03" } ], "pfam_id": "PF11992", "short_name": "TgpA_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11994", "short_name": "DUF3489", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 9, "discovery_scanned": true, "example_count": 9, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/npk1-activating-kinesin-like-protein-c-terminal-ipr021881.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/npk1-activating-kinesin-like-protein-c-terminal-ipr021881.yaml" } ], "pfam_ids": [ "PF00225", "PF11995" ], "protein_name": "Kinesin-like protein KIN-7E", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGAIAGEELKKMEKTQVHVAREEKILVLVRLRPLNEKEILANEAADWECINDTTVLYRNTLREGSTFPSAYSFDRVYRGECPTRQVYEDGPKEVALSVVKGINSSIFAYGQTSSGKTYTMSGITEFAVADIFDYIFKHEDRAFVVKFSAIEIYNEAIRDLLSPDSTPLRLRDDPEKGAAVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREFLGKENSTTLMASVNFIDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLSNGRQGHINYRDSKLTRILQPCLGGNARTAIVCTLSPARSHVEQTRNTLLFACCAKEVTTKAQINVVMSDKALVKQLQRELARLESELRNPAPATSSCDCGVTLRKKDLQIQKMEKQLAEMTKQRDIAQSRLEDFMKMVEHDASSKAGTPHFRNRTNKWEDGSVSEISGVVDPDRTSFISDGTSTPLSTARAHVRSHSDDDLEEEMSPRHSGDQSEEYCKEVQCIEMEESTRDINNDSEERTDAETLLGHNAEANGETGSAQHRIPSSVRSVRRRKSWSRGDTMTGTSTPPDALETDYRGRPEGHGFAFPDLEFGSGGKLLRNDSMTSRGSDSTEAHSIGTPLVGEEGGITSIRSFVEGLKEMVSDPENSGKMRKDIGVDAMEEEVSGTMTNWSEEFERQREQILGLWQTCHVSLVHRTYFFLLFTGDQADSIYIGVELRRLSFMKESFSQGNHAFERGQTLTIASSLKALHRERRMLSKLVGKRFTGEERKRLYQKFGIAVNSKRRRLQLANQLWSKPNDITHAVESAAVVAKLVRFVEQGRAMKEMFGLSFTPPLPTTRRSLNWRKSMATLF", "sequence_length": 862, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "172ba1366e8777feaf0f4e3daea7908ec1285965340aa1928e5f7f99b2a8e914", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4IGL2.json", "taxon_id": "3702", "uniprot_accession": "F4IGL2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/npk1-activating-kinesin-like-protein-c-terminal-ipr021881.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/npk1-activating-kinesin-like-protein-c-terminal-ipr021881.yaml" } ], "pfam_ids": [ "PF00225", "PF11995" ], "protein_name": "Kinesin-like protein KIN-7G", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGIGEDQMQGSSGREEKIFVSVRLRPLNVRERARNDVADWECINDETVIYRSHLSISERSMYPTAYTFDRVFGPECSTREVYDQGAKEVALSVVSGVHASVFAYGQTSSGKTYTMIGITDYALADIYDYIEKHNEREFILKFSAMEIYNESVRDLLSTDISPLRVLDDPEKGTVVEKLTEETLRDWNHFKELLSICIAQRQIGETALNEVSSRSHQILRLTVESTAREYLAKDKFSTLTATVNFIDLAGSERASQSLSAGTRLKEGGHINRSLLTLGTVIRKLSKGKNGHIPFRDSKLTRILQTSLGGNARTSIICTLSPARVHVEQSRNTLLFASCAKEVTTNAQVNVVMSDKALVRHLQRELAKLESELSSPRQALVVSDTTALLKEKDLQIEKLNKEVFQLAQELERAYSRIEDLQQIIGEAPQQEILSTDSEQTNTNVVLGRQYPKLRVRSSWESLNITPESPLSAQASIMISPQSTEHGSDENVFQLSDLRLNSGASSPAQHLAFVTPGKFTKVRLNIRGVESKNQLHIHKGESVDQSRVQGERLHEMDEPSEVDSEDTCTELQCIETESPGIIMYPEPNILPDRCKAVSALPLCEPESKNSRPPTETAEEKEEKEETEEKEEEEEERVKEVSSVSIQTKEKSGPIKVSPRCVLSLTDESFPDESSNLKRDPTHQDFVTPSPEKLYAWHLESNGQTAGGTGFTRSRSCGASFVSSSSFSLSERDANTPPCWYQNERAESNLKPSNSKRPPLPKHISRMSMPATWFEKDFNHTQRMPAGLDGVNMIKSSPNGSQVSTSKSHVYARQTSGRALISQDEGEETVPQRDKRIIHLSMEEIEQKFLALRSSKSFKDAAVDPIQDYLTMPLNWPLEFKRLEMEIIELWHACNVSLSHRSYFFLLFRGDQKDCLYMEVELRRLKYIRETFTHNNKAIENGRTLTSMSSLRALNRERYKLSQLMQKKLTKEERENVFLRWGIGLNTKHRRLQLAHRLWSESKDMDHVRESASVVGKLMGFVDMDLASKEMFGLNFSLRPRAKKSSLWKRSVLSLSIL", "sequence_length": 1054, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6687a468d5e2ace449397a83dccec4f753bc23c30de38e155832ec53b56b04ff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4J394.json", "taxon_id": "3702", "uniprot_accession": "F4J394", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/npk1-activating-kinesin-like-protein-c-terminal-ipr021881.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/npk1-activating-kinesin-like-protein-c-terminal-ipr021881.yaml" } ], "pfam_ids": [ "PF00225", "PF11995" ], "protein_name": "Kinesin-like protein KIN-7I", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGGEEKILVSVRVRPLNEKEKTRNDRCDWECINDTTIICKFHNLPDKSSYTFDKVFGFECPTKQVYDDGAKEVALCVLSGINSSIFAYGQTSSGKTYTMSGITEFAMDDIFAYIDKHKQERKFTLKFSAMEIYNEAVRDLLCEDSSTPLRLLDDPERGTVVEKLREETLRDRSHLEELLSICETQRKIGETSLNEISSRSHQILRLTIESSSQQFSPESSATLAASVCFVDLAGSERASQTLSAGSRLKEGCHINRSLLTLGTVIRKLSKGKNGHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHLEQSRNTLLFATCAKEVTTNAQVNLVVSEKALVKQLQRELARMENELKNLGPASASSTSDFYALMLKQKEELIAKMEEQIHELKWQRDVAQSRVENLLKSTAEERSSSSSMDSRRRRISYDSTDFDEPRMLNNLGKSNLYSPDEDGFLLDDTTPQFPGHNLHDKWEEMAQSTTQEPEDACKEVRCIEVNSGEAERVQIQDSLDDIVEKKEYEQNYESQKDDADSSIKNIDMELSLYTKPEAEDGVSVKKLIEDVQETEQSVEKQKQSPKKEEMEQYLSRDMSEQVTKSLPEEEQCVQEYGAYDKLEAQDVLTINKLEESQQTEQSVEKEDTKKNLSSKKEDLKQNLSMDQSEQLYKSPPEDEKCVEVYEGSDKDDNTYEALKKKVKEMQKTIEYFMSIQSAEEKQSPSFNIIDDTLSPGEYFKMRRSRSCRENLLFTKAAAAAASRGFIFETTNTSFDSDITVSMDAQSIKDSDTETSSSSFHEFMAGLRERTMQHHSTHSDDTDTKTMKPENTDDGGEKTEFERQQSQIIELWQVCNVPLVHRTYFFLLFKGDPSDFVYMEVELRRLSFLKDSTETSRKQTAKAVTREREWLAKQIPNKFGKKEKEEVYKKWGVELSSKRRSLQVTHKLWNNNTKDIEHCKESASLIATLVGFVDSTLTPKEMFGLSLTPTTFNIKPSSGWKFSNSFSRISFTG", "sequence_length": 1004, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "768271a47a3c186496dc244d3f4954aba13966133658917d5a35170e1c0af573", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4JQ51.json", "taxon_id": "3702", "uniprot_accession": "F4JQ51", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/npk1-activating-kinesin-like-protein-c-terminal-ipr021881.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/npk1-activating-kinesin-like-protein-c-terminal-ipr021881.yaml" } ], "pfam_ids": [ "PF00225", "PF11995" ], "protein_name": "Kinesin-like protein KIN-7F", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKTQMPVAREEKILVLVRLRPLNQKEIAANEAADWECINDTTILYRNTLREGSNFPSAYSFDKVYRGECPTRQVYEDGTKEIALSVVKGINCSIFAYGQTSSGKTYTMTGITEFAVADIFDYIFQHEERAFSVKFSAIEIYNEAIRDLLSSDGTSLRLRDDPEKGTVVEKATEETLRDWNHLKELLSICEAQRKIGETSLNERSSRSHQMIRLTVESSAREFLGKENSTTLMASVNFIDLAGSERASQAMSAGTRLKEGCHINRSLLTLGTVIRKLSKGRQGHINFRDSKLTRILQPCLGGNARTAIICTLSPARSHVELTKNTLLFACCAKEVTTKARINVVMSDKALLKQLQRELARLETELRNPASSPASNCDCAMTVRKKDLQIQKMEKEIAELRKQRDLAQSRLEDFMRMIEHNVASKPGTPHFGNHTDKWEDGSVSETSGVVDSDRRSFISDGMSTPLSISRAYVHSHSDDDDLDEDLPRRSEDLSEEYCREVQCIETEESVTVYNNKKDKRAEPENVLGCGEDANGETSVSQNVRVRSWNRRETVSGPSTPPENIGTGFLGRPESHKIAFPDLEFGSTVSRNDSMSSCGSDSTGTQSIRTPLGEEGGITSIRTFVEGLKEMAKRQGEVSNAEDSGKMRRDIGLDSMDREFERQRQEILELWQTCNISLVHRTYFYLLFKGDEADSIYIGVELRRLLFMKDSFSQGNQALEGGETLTLASSRKELHRERKMLSKLVGKRFSGEERKRIYHKFGIAINSKRRRLQLVNELWSNPKDMTQVMESADVVAKLVRFAEQGRAMKEMFGLTFTPPSFLTTRRSHSWRKSMPALF", "sequence_length": 836, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bee8aad4ef558ad3b3bdd62d43526645b1d3fad0f3e76eba27605bcd6d9921e2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4JUI9.json", "taxon_id": "3702", "uniprot_accession": "F4JUI9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/npk1-activating-kinesin-like-protein-c-terminal-ipr021881.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/npk1-activating-kinesin-like-protein-c-terminal-ipr021881.yaml" } ], "pfam_ids": [ "PF00225", "PF11995" ], "protein_name": "Kinesin-like protein KIN-7H", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTEDDDQMLGPSGTQEKIYVSVRMRPLNDKEKFRNDVPDWECINNTTIIYRSHLSISERSMYPSAYTFDRVFSPECCTRQVYEQGAKEVAFSVVSGVNASVFAYGQTSSGKTYTMSGITDCALVDIYGYIDKHKEREFILKFSAMEIYNESVRDLLSTDTSPLRLLDDPEKGTVVEKLTEETLRDWNHFKELLSVCKAQRQIGETALNEVSSRSHQILRLTVESIAREFSTNDKFSTLTATVNFIDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKEKTGHIPFRDSKLTRILQSSLGGNARTAIICTMSPARIHVEQSRNTLLFASCAKEVTTNAQVNVVMSDKALVKHLQRELAKLESELRSPSQASIVSDTTALLTEKDLEVEKLKKEVFQLAQQLEQARSEIKDLRRMVEEEKNQEKETLSTETEGLNVLMEHQYPKLRVRRTWDSENTTPLSPISAHRSSISPRSTEYSYEENVFQLSDFRIDSASSSPQQLAFVTPFLKVPLDDIHVTDTVDQSHVHKEEAIEEPHVQEERFYEMAEHTDGNSEDNCREVRCIETEKSDISIGPVENMPESSPDKYEAVTAEEPVSVTEPKNLQHPTEEAVCVTETKNLQHPTEAENEEEEEEERVKEVSGASPEPKQESNLTKNPALCDLECSPDEFDTSMSNLSRISTPPALITPSPEKPFSWIMERDSQLFRGMKLTRSRSCRPSLLSSPSSSWLEKDADTPPSWYDKEFIKTAERNLTMCDIKNQRLLQDEFSGRSMPTTWFERSLSDTQTVDAASHGVSNEMSPNESPFRPSDASVFELQTSGRASISQDRTEETAAQKDKQIIHRSMEEREQKFLASNSTKSFKDAAMDPIQDYLDTALNWPVEFKRLQREIIELWHVCKVSMAHRSYFFLLFRGDQKDCLYLEVELRRLKYIRESFAQNSNDGNNMTLISCTRALTRERYKLSKLMQRKLSKEERENLFLRWGIGLNTNHRRVQLARRLWSDYKDMGHVRESASLVGKLNGFVDMKLTSTEMFGVNYAFRPPRPKKSSLWKRSVLSLSFL", "sequence_length": 1063, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0c73ac6a910b934f910adf766c8f6f6471620a72318555159ced5f5806e898ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4JZ68.json", "taxon_id": "3702", "uniprot_accession": "F4JZ68", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/embryo-sac-cellularization-go0009558.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009558", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/embryo-sac-cellularization-go0009558.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/radial-microtubular-system-formation-go0010245.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010245", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/radial-microtubular-system-formation-go0010245.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/kinesin-motor-domain-cenp-e-kip2-like-subgroup-kinesin-motor-domain-ce-cd01374.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd01374", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/kinesin-motor-domain-cenp-e-kip2-like-subgroup-kinesin-motor-domain-ce-cd01374.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/npk1-activating-kinesin-like-protein-c-terminal-ipr021881.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/npk1-activating-kinesin-like-protein-c-terminal-ipr021881.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3490-pf11995.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11995", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3490-pf11995.yaml" } ], "pfam_ids": [ "PF00225", "PF11995" ], "protein_name": "Kinesin-like protein KIN-7B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMGPPRTPLSKIDKSNPYTPCGSKVTEEKILVTVRMRPLNWREHAKYDLIAWECPDDETIVFKNPNPDKAPTKYSFDKVFEPTCATQEVYEGGSRDVALSALAGTNATIFAYGQTSSGKTFTMRGVTESVVKDIYEHIRKTQERSFVLKVSALEIYNETVVDLLNRDTGPLRLLDDPEKGTIVENLVEEVVESRQHLQHLISICEDQRQVGETALNDKSSRSHQIIRLTIHSSLREIAGCVQSFMATLNLVDLAGSERAFQTNADGLRLKEGSHINRSLLTLTTVIRKLSSGRKRDHVPYRDSKLTRILQNSLGGNARTAIICTISPALSHVEQTKKTLSFAMSAKEVTNCAKVNMVVSEKKLLKHLQQKVAKLESELRSPEPSSSTCLKSLLIEKEMKIQQMESEMKELKRQRDIAQSELDLERKAKERKGSSECEPFSQVARCLSYHTKEESIPSKSVPSSRRTARDRRKDNVRQSLTSADPTALVQEIRLLEKHQKKLGEEANQALDLIHKEVTSHKLGDQQAAEKVAKMLSEIRDMQKSNLLTEEIVVGDKANLKEEINRLNSQEIAALEKKLECVQNTIDMLVSSFQTDEQTPDFRTQVKKKRLLPFGLSNSPNLQHMIRGPCSPLSGTENKDPESNVVSANSAPVSFGATPPKRDDNRCRTQSREGTPVSRQANSVDIKRMNRMYKNAAEENIRNIKSYVTGLKERVAKLQYQKQLLVCQVLELEANETGAASEYDATDESQMDWPLCFEEQRKQIIMLWHLCHISIIHRTQFYMLFKGDPADQIYMEVELRRLTWLEQHLAELGNASPALLGDEPASYVASSIRALKQEREYLAKRVNTKLGAEEREMLYLKWDVPPVGKQRRQQFINKLWTDPHNMQHVRESAEIVAKLVGFCDSGETIRKEMFELNFASPSDKKTWMMGWNFISNLLHL", "sequence_length": 938, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e4f2548d9aa4c4e8169176ceedd9839e4eb0142baa4b40620662d66b10265d51", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LNZ2.json", "taxon_id": "3702", "uniprot_accession": "Q8LNZ2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/embryo-sac-cellularization-go0009558.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009558", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/embryo-sac-cellularization-go0009558.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/npk1-activating-kinesin-like-protein-c-terminal-ipr021881.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/npk1-activating-kinesin-like-protein-c-terminal-ipr021881.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3490-pf11995.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11995", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3490-pf11995.yaml" } ], "pfam_ids": [ "PF00225", "PF11995" ], "protein_name": "Kinesin-like protein KIN-7A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIKTPGTPVSKMDRTPAVTPGGSSRSREEKIVVTVRLRPMNKRELLAKDQVAWECVNDHTIVSKPQVQERLHHQSSFTFDKVFGPESLTENVYEDGVKNVALSALMGINATIFAYGQTSSGKTYTMRGVTEKAVNDIYNHIIKTPERDFTIKISGLEIYNENVRDLLNSDSGRALKLLDDPEKGTVVEKLVEETANNDNHLRHLISICEAQRQVGETALNDTSSRSHQIIRLTIQSTHRENSDCVRSYMASLNFVDLAGSERASQSQADGTRLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALAHVEQSRNTLYFANRAKEVTNNAHVNMVVSDKQLVKHLQKEVARLEAERRTPGPSTEKDFKIQQMEMEIGELRRQRDDAQIQLEELRQKLQGDQQQNKGLNPFESPDPPVRKCLSYSVAVTPSSENKTLNRNERARKTTMRQSMIRQSSTAPFTLMHEIRKLEHLQEQLGEEATKALEVLQKEVACHRLGNQDAAQTIAKLQAEIREMRTVKPSAMLKEVGDVIAPNKSVSANLKEEITRLHSQGSTIANLEEQLESVQKSIDKLVMSLPSNISAGDETPKTKNHHHQSKKKKLLPLTPSSASNRQNFLKSPCSPLSASRQVLDCDAENKAPQENNSSAARGATTPQGSEKETPQKGEESGDVSSREGTPGYRRSSSVNMKKMQQMFQNAAEENVRSIRAYVTELKERVAKLQYQKQLLVCQVLELEANDGAGYSVENEENTIMEDEEQNQVAWHITFIEERQQIIELWHVCHVSIIHRTQFYLLFKGDQADQIYMEVELRRLTWLEQHLAEVGNATPARNCDESVVSLSSSIKALRREREFLAKRVNSRLTPEEREELYMKWDVPLEGKQRKLQFVNKLWTDPYDSRHVQESAEIVAKLVGFCESGNISKEMFELNFAVPSDKRQWNIGWDNISNLLHL", "sequence_length": 974, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3de2a10c236fc58d1fd9520f1e45ba18ef3c700838bc99a473cf76f2a793800f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8S905.json", "taxon_id": "3702", "uniprot_accession": "Q8S905", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Nicotiana tabacum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3490-pf11995.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11995", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3490-pf11995.yaml" } ], "pfam_ids": [ "PF00225", "PF11995" ], "protein_name": "Kinesin-like protein NACK1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVRTPGTPASKIDKTPATTPNGHRGREEKIVVTVRLRPLNKRELSAKDHAAWECIDDHTIIYRPVPQERAAQPASSFTFDKVFGPDSITEAVYEEGVKNVALSSLMGINATIFAYGQTSSGKTYTMRGITEKAVNDIYAHIMSTPEREFRIRISGLEIYNENVRDLLNSESGRSLKLLDDPEKGTVVEKLVEETASNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLTIESTLRESSDCVRSYVASLNFVDLAGSERASQTNADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPASSHVEQSRNTLYFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPANEKDWKIQQMEMEIEELKRQRDLAQSQVDELRRKLQEEQGPKPSESVSPVVKKCLSFSGTLSPNLEEKAPVRSERTRNTMGRQSMRQSLAAPFTLMHEIRKLEHLQEQLGDEANRALEVLQKEVACHRLGNQDAAETIAKLQAEIREMRSIRPLPKEVEVGSVVAVNKSVSANLKEEIARLHSQGSTIADLEEQLENVQKSLDKLVMSLPSNNDQQSNNDTTQKAKHPSKKKKLLPLTSSNSINRQNFLKSPCSPLSTARQVLDCEVENRAPDSDDLSCEIQPDETPTKSDGGDVSSKEGTPYRRSSSVNMRKMQKMFQEAAEENVRNIRSYVTELKERVAKLQYQKQLLVCQVLELEANEAAGYNLEDDENIHQIPEESPVSWQITFKEQRQQIIDLWDVCYVSIIHRSQFYLLFKGDPADEIYLEVELRRLTWLQQHLAELGNATPARVGNEPTVSLSSSIRALKREREFLAKRLTTRLTAEERDYLYIKWEVPLEGKQRRMQFINKLWTNPHDAKHVHESAEIVAKLVGFCEGGNMSREMFELNFVLPSDRRPWFAGWNQISDLLHI", "sequence_length": 959, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3d1c051522c9267ad905ef1b9da343740bfbad66cb9084431c7b54d5f179702f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8S950.json", "taxon_id": "4097", "uniprot_accession": "Q8S950", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/npk1-activating-kinesin-like-protein-c-terminal-ipr021881.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/npk1-activating-kinesin-like-protein-c-terminal-ipr021881.yaml" } ], "pfam_ids": [ "PF00225", "PF11995" ], "protein_name": "Kinesin-like protein KIN-7J", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASGGKGEKILVSVRVRPQNEKEKARNDICDWECVNNTTIVCNNNLPERSLFPSTYTFDKVFGFDSPTKQVYEDGAKEVALCVLGGINSSIFAYGQTSSGKTYTMCGITKFAMDDIFCYIQKHTDRKFTLKFSAIEIYNEAVRDLLSGDNNQRRLLDDPERGTVVEKLIEETIQDRTHLEELLTVCETQRKIGETSLNEVSSRSHQILRLTIESTGREYSPDSSSTLAASVCFIDLAGSERASQTLSAGTRLKEGCHINRSLLTLGTVIRKLRFDPCDIAQSQVENLLKSTAEERSSRMDEQSMFSSMDFDADFRRRSYDSTDLGEPSIINNLTERNFEFLENSEEDDFLLDDKTPQFSRHNLYDDWEELVQITDERLEDACKEVRCIEPEAEQSSGQPAACESHDSLDDIKAENEDMEISTPAEKENVDLSLKTIDVNAKPETYELTLKNSDLEIGPSVEAQESQESVNEEEQMKNEERKMSPSTKQAEQCLNKEENAQSEQQSTEDCELNSLPINNQSEATVEVELTPNDAKLDEDATSRDKWESKQQQEADKDCNESSVCKNIGTDDNDNDTYMALKEKVKEMQKKIEYLMSMHTAEQQQSPSFRRDFKSPPEYFTAKRSRSCRENLLSVRSPHWFESLEVSNNTSPTWRVMQTKASPGRPNTSSISFDSGSSTSIDTRSLKDYDPEMGNSFREFVAGLEEMAKKHHSIDSTPELDYGIPYAPTKTERMEIRPESPADSVAANGQYSISSSDFERQQRKIIELWAACNVPLVHRTYFFLLFKGDPSDYVYMEVELRRLSFLKQTISNDMETSRMQTVKALTREKEWISKQLPKKFPWNQRIGLYQKWGVEVNSKQRSLQVAHKLWTNTQDMDHIKESASLVAKLLGFVEPSRMPKEMFGLSLLPRTENVKSSGWRFTKSFSAIRLTR", "sequence_length": 930, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3bc4f36e39134e9d931d01ee88b4f6a83f86b9024612cff516c30454d5e01034", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FIG8.json", "taxon_id": "3702", "uniprot_accession": "Q9FIG8", "uniprot_release": "2026_03" } ], "pfam_id": "PF11995", "short_name": "DUF3490", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11996", "short_name": "Lymphostatin_delI", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF11997", "short_name": "DUF3492", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/photosystem-ii-oxygen-evolving-complex-assembly-go0010270.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010270", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/photosystem-ii-oxygen-evolving-complex-assembly-go0010270.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/tpr-end-of-group-domain-containing-protein-nf047558.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF047558", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/tpr-end-of-group-domain-containing-protein-nf047558.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3493-pf11998.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11998", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3493-pf11998.yaml" } ], "pfam_ids": [ "PF11998" ], "protein_name": "Protein LOW PSII ACCUMULATION 1, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVATAPSLNRHFPRRISNLYSRVKQRRPWLPPGDATLFNSRRNWDSHLFVYASSSSSPSSSPPSPNSPTDDLTAELCVNTGLDLFKRGRVKDALVQFETALSLAPNPIESQAAYYNKACCHAYRGEGKKAVDCLRIALRDYNLKFATILNDPDLASFRALPEFKELQEEARLGGEDIGDNFRRDLKLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDFDTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRRSGRGMPDWAEISKELPPMDDVLSKLER", "sequence_length": 453, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "41d1fb472d8e9ab6cf964d6c853d8a03d3c45eddb94714b1b8a51e704fe376c3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SRY4.json", "taxon_id": "3702", "uniprot_accession": "Q9SRY4", "uniprot_release": "2026_03" } ], "pfam_id": "PF11998", "short_name": "DUF3493", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Nostoc sp. (strain HG1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/pep-exosort-dom-pf07589.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07589", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/pep-exosort-dom-pf07589.yaml" } ], "pfam_ids": [ "PF07589", "PF11999" ], "protein_name": "Ice-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKINRKYAIILAIVAFSSFQTEAKAASISMLGTASNFGVLGGSTVTNTGPSVITESLGVSTGSSATGFPPAIVNGTIFTSDTVAAQAQVDNATAYNKLASLIPNKDLTGLDLGGLTLTPGVYSFSSSAQLTGILTLDNLGDPNALFVFQIGSTLTTASNSSIVTTNGDAPNVFFQIGSSATLGTGTQFMGNILALTSITLTTGVNIDCGRALAQNGAVTMDTNKVSNACYTKPQEKAVVPEPDSSLAVLGSGLVSLLFAFRKRFRKGW", "sequence_length": 269, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9b40fcc775d7afba0f83f047cace66f200287b97cfdda78a7860ebf02fd365a3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A7D5JNZ7.json", "taxon_id": "2593659", "uniprot_accession": "A0A7D5JNZ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Colwellia sp", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ice-binding-pf11999.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11999", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ice-binding-pf11999.yaml" } ], "pfam_ids": [ "PF11999" ], "protein_name": "Ice-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTLISNSKKVLIPLIMGSIFAGNVMAAGPYAVELGEAGTFTILSKSGITDVYPSTVTGNVGTSPITGAALLLNCDEVTGAMYTVDSAGPLPCSINSPYLLELAVSDMGIAYNDAAGRVPADHTELGTGEIGGLTLEPGVYKWSSDVNISTDVTFNGTMDDVWIMQISGNLNQANAKRVTLTGGALAKNIFWQVAGYTALGTYASFEGIVLSKTLISVNTGTTVNGRLLAQTAVTLQKNTINAPTEQYEEAPL", "sequence_length": 253, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "110e66cfa59c248c3a6c562181359ff515dc81dc376c53940a563e5bbb2e333e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5XB26.json", "taxon_id": "56799", "uniprot_accession": "A5XB26", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Leucosporidium sp. (strain AY30)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ice-binding-pf11999.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11999", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ice-binding-pf11999.yaml" } ], "pfam_ids": [ "PF11999" ], "protein_name": "Ice-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLLSIITIGLAGLGGLVNGQRDLSVELGVASNFAILAKAGISSVPDSAILGDIGVSPAAATYITGFGLTQDSSTTYATSPQVTGLIYAADYSTPTPNYLAAAVANAETAYNQAAGFVDPDFLELGAGELRDQTLVPGLYKWTSSVSVPTDLTFEGNGDATWVFQIAGGLSLADGVAFTLAGGANSTNIAFQVGDDVTVGKGAHFEGVLLAKRFVTLQTGSSLNGRVLSQTEVALQKATVNSPFVPAPEVVQKRSNARQWL", "sequence_length": 261, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a198d962df027a07f40de6445b43928339906a8cbf342d754b771bcab1831a6e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C7F6X3.json", "taxon_id": "662878", "uniprot_accession": "C7F6X3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Flavobacterium frigoris (strain PS1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ice-binding-pf11999.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF11999", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ice-binding-pf11999.yaml" } ], "pfam_ids": [ "PF11999" ], "protein_name": "Ice-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKILKRIPVLAVLLVGLMTNCSNDSDSSSLSVANSTYETTALNSQKSSTDQPNSGSKSGQTLDLVNLGVAANFAILSKTGITDVYKSAITGDVGASPITGAAILLKCDEVTGTIFSVDAAGPACKITDASRLTTAVGDMQIAYDNAAGRLNPDFLNLGAGTIGGKTLTPGLYKWTSTLNIPTDITISGSSTDVWIFQVAGNLNMSSAVRITLAGGAQAKNIFWQTAGAVTLGSTSHFEGNILSQTGINMKTAASINGRMMAQTAVTLQMNTVTIPQ", "sequence_length": 276, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b725f5f0eff2f7b44608df3d0cda9beb3d77b70b225fdabce88f30576c5b753d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/H7FWB6.json", "taxon_id": "1086011", "uniprot_accession": "H7FWB6", "uniprot_release": "2026_03" } ], "pfam_id": "PF11999", "short_name": "Ice_binding", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12000", "short_name": "Glyco_trans_4_3", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3496-ipr021885.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021885", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3496-ipr021885.yaml" } ], "pfam_ids": [ "PF00023", "PF12001", "PF12796", "PF14915" ], "protein_name": "Ankyrin repeat domain-containing protein 18B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKLLSFGRRLGQALLSSMDQEYAGRGYHIRDWELRKIHRAAIKGDAAEVEHCLTRRFRDLDVRDRKDRTVLHLACAHGRVQVVTLLLDRKCQINICDRLNRTPLMKAVHCQEEACAIILLKRGANPNIKDIYGNTALHYAVYNEGTSLAERLLSHHANIEALNKEGNTPLLFAINSRRQHMVEFLLKNQANIHAVDNFKRTALILAVQHNLSSIVTLLLQQNIHISSQDMFGQTAEDYAFCCDLRSIQQQILEHKNKMLKNHLRNDNQETAAMKPENLKKRKKRKKLKKRKEGAKAEHNLKVASEEKQERLERSENKQPQDSQSYGKKKDEMFGNFMLKRDIAMLKEELYAIKNDSLRKEKKYIQEIKSITEINANFEKSVRLNEEMITKKVAQYSQQLNDLKAENARLNSKLEKEKHNKERLEAEVESLHSNLATAINEYNEILERKDLELVLWRADDVSRHETMGSNISQLTDKNELLTEQVHKARVKFNTLKGKLRETRDALREKTLALESVQLDLKQAQHRIKEMKQMHPNGEAKESQSIGKQNSSEERIRQRELENLLLERQLEDARKEGDNKEIVINIHRDCLENGKEDLLEERNKELMNEYNYLKEKLLQYEKEKAEREVIVREFQEELVDHLKKFSMSESPLEGTSHCHINLDETWTSKKKLFQVEIQPEEKHEEFRKVFELISLLNYTADQIRKKNRELEEEATGYKKCLEMTINMLNAFANEDFSCHGDLNTDQLKMDILFKKLKQKFDDLMAEKEAVSSKCVNLAKDNEVLHQELLSMGKVQEKCEKLEKDKKMLEEKVLNLKTHMEKDMVELGKVQEYKSELDERAMQAIEKLEEIHLQKQAEYEKQLEQLNKDNTASLKKKELTLKDVECKFSKMKTAYEDVTTELEEYKEAFAVALKANSSMSEKITKSDKKIAVISTKLFMEKERMEYFLSTLPMRPDPELPCVENLNSIELNRKYIPKMAIRIPTSNPQTSNNCKNSLTELLLRWALAPIYFLL", "sequence_length": 1011, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4b9c374d2c577730aead76064190acb6516f8998784713f51d539472c68e695c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2A2Z9.json", "taxon_id": "9606", "uniprot_accession": "A2A2Z9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccdc144c-like-coiled-coil-domain-ipr039497.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039497", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccdc144c-like-coiled-coil-domain-ipr039497.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3496-ipr021885.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021885", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3496-ipr021885.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3496-pf12001.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3496-pf12001.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A2RUR9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12001", "PF14915" ], "protein_name": "Coiled-coil domain-containing protein 144A", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "494f2b066e65315daef7290521cd57394f7a3b50ddf4a54347af0ebe878bd59f", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MASWGGEKRGGAEGSPKPAVYATRKTPSVGSQGDQWYLGYPGDQWSSGFPYSWWKNSVGSESKHGEGALDQPQHDVRLEDLGELHRAARSGDVPGVEHILAPGDTGVDKRDRKKSIQQLVPEYKEKQTPESLPQNNNPDWHPTNLTLSDETCQRSKNLKVDDKCPSVSPSMPENQSATKELGQMNLTEREKMDTGVVLLSGNDTLHDLCQSQLPENKESKEAEQDSELTSEEEQERLKGCENKQPQKTSQEPEMAKDCDREDIPIYPVLPHVQKSEEMWIEQGKLEWKNQLKLVINELKQRFGEIYEKYKIPACPEEEPLLDNSTRGTDVKDIPFNLTNNIPGCEEEDASEISVSVVFETFPEQKEPSLKNIIHPYYHPYSGSQEHVCQSSSKFHLHENKLDCDNDNKPGIGHIFSTDKNFHNDASTKKARNPEVVMVEMKEDQEFDLQMTKNMNQNSDSGSTNNYKSLKPKLENLSSLPPDSDRTSEVYLHEELQQDMQKFKNEVNTLEEEFLALKKEDVQLHKDVEEEMEKHRSNSTELSGTLTDGTTVGNDDDGLNQQIPRKENGEHDRPADKTSNEKNEVKNQIYPEADFADSMEPSEIASEDCELSHSVYENFMLLIEQLRMEYKDSASLPRIQDTFCLCEHLLKLKNNHCDQLTVKLKQMENMVSVLQNELSETKKTKLQLELQKIEWEKELYDLRLALKQENEEKRNADMLYNKDSEQLRIKEEECGKVVETKQQLKWNLRRLVKELRTVRNNLDLVVQERNDAQKQLSEEQDARILQDQILTSKQKELEMARKKMNSEISHRHQKEKDLFHEDCMLQEEIALLRLEIDTIKNQNKQKEKKYFEDIEAVKEKNDNLQKIIKLNEETLTETILQYSGQLNNLTAENKILNSELENGKQNQERLEIEMESYRCRLAAAVRDCDQSQTARDLKLDFQRTRQEWVRLHDKMKVDMSGLQAKNEILSEKLSNAESKINSLQIQLHNTRDALGRESLILERVQRDLSQTQCQKKETEQMYQIEQSKLKKYIAKQESVEERLSQLQSENMLLRQQLDDAHKKANSQEKTSSTIQDQFHSAAKNLQAESEKQILSLQEKNKELMDEYNHLKERMDQCEKEKAGRKIDLTEAQETVPSRCLHLDAENEVLQLQQTLFSMKAIQKQCETLQKNKKQLKQEVVNLKSYMERNMLERGKAEWHKLLIEERARKEIEEKLNEAILTLQKQAAVSHEQLVQLREDNTTSIKTQMELTIKDLESEISRIKTSQADFNKTELERYKELYLEEVKVRESLSNELSRTNEMIAEVSTQLTVEKEQTRSRSLFTAYATRPVLESPCVGNLNDSEGLNRKHIPRKKRSALKDMESYLLKMQQKLQNDLTAEVAGSSQTGLHRIPQCSSFSSSSLHLLLCSICQPFFLILQLLLNMNLDPI", "sequence_length": 1427, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "494f2b066e65315daef7290521cd57394f7a3b50ddf4a54347af0ebe878bd59f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2RUR9.json", "taxon_id": "9606", "uniprot_accession": "A2RUR9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccdc144c-like-coiled-coil-domain-ipr039497.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039497", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccdc144c-like-coiled-coil-domain-ipr039497.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3496-ipr021885.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021885", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3496-ipr021885.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3496-pf12001.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3496-pf12001.yaml" } ], "pfam_ids": [ "PF00023", "PF12001", "PF12796", "PF14915" ], "protein_name": "Ankyrin repeat domain-containing protein 26", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKIFGFRSKGPSPLGPSARPRSNCVGFGRESASGSHVPRYHIHDKDMGKIHKAASVGDVAKVQHILILGKSGVNDRDKKDRTALHLACAYGHPEVVTLLVERKCEIDARDSESSTALIKAVQCQEEECAAILLDHGADPNVMDSSGNTALHYAVYSENTSMAAKLLAHNANIEAKNKDDLTPMLLAVKENKQHIVEFLVKKKASIHAVDQLGSNRQMFEYDGKRLQRSENSNPVDNGSEDGSLTRSYNTPGPADSWPTSDEEDYNFDNKNVPKINLTELWTAAQQSRKNQTKCGFEELDNGARFDDSDSPSESEDAIEVEPAPSVRVQTLSPSRQSPDPVEGATELAIEGEENGTDVIESASQEQPNHDNLTRADGWHKSNKSEMMSALGLGEDEDEDSPWDSESISESVSLKDVGHFSGTADQTGKRRAHGQIEDVTYIPSCMSGSRNFKMAKLEESRNVGLPVAHMEAPRKYVIMEPTIERRAPVLNKTETVGMTDAQTFKSEPESVSREEQTRLSGSEDSQQKVEEKRKYKNNEAEPSGNLYSGAADGGADVKPQSGDTENQQSPREGSEGRGSGPALLMKEAKKMENEKWVSREPARTAMSERTGLPTGGWPQMQDGSCWSDTDQSEARPTKKTSSKHNKDSGQTAAVDNLDDFTESSETASEDHELQGPDSESILCAIEHLRLECKDTASLLKIRDAVYSYKRLIELKRSHCELLTGKLKRMENKYKGLQKEMSETEEVKSRLEHEKVGWEQELCRLRFALKQEEEKRRSADQLSEKTMEQLRRKGEQCQSEVEARQQLEASLRTLEMELKTVKSHLNQVLEERNETQRQLSREQNARMLQDGILASHLCKQKEIEMTQKKMTSEVSVSHEKEKDLLHKNQRLQDEVAVLRLEMDTIKSHNQEKEKRYLEDIKIANEKNDNLQRMVKLNMLSSKLDNEKQNKERLETDVESFRSRLASALHDHAEIQTAKRDLEIAFQRARDEWFRVKDKMNFDMSNLRDNNEVLSQQLSKTERKLNSLEIEFHHTKDELREKTLALKHAQRDLSQTQCQMKEVEHMFQDEQGKVSKFMGKQESIEERLAQLQSENTLLRQQLDDAANKAESKDKTIVNIQDQFQDVLTRFQAESQRHSLRLEDRNQELVSECSHLRERLCQYENEKAEREVVVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEEEARDLKKKLGQLRSQLQEARDQHREAVHHAEKMEDHLQKLELEKSKFEITIKKQSEEIDQLQENLSRVNLSEEDKEKLQKLTELKESLECTVDQEQKRSSALEKELMRTIQKKCGKLEKNKKQLEQEVVNLRSHMEKNMVEHSQAQQYAREVEERARQDLVEKLKQVNLFLQAQAASQESLEQLRENSNASVRSQMELRIKDLESQLYRMKAQEDFDKIELEKYKQLYQEEFRARKSLSSKLNKTSEKLEEASSKLLLEEQQNRSLLSTLSTRPVVECPCVGSLHNSLVFNRTLIPRENIVVPTSGLQPSNKRVEIYLTKMHQELEKSINRELKEATAELESEFCRVSPLGSATKASQDQLSDASQEFIDILKKKYMI", "sequence_length": 1581, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1fcddeb21de3c3924e6985e13bf83b0ea50796836e90982453458b7c0805488b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q811D2.json", "taxon_id": "10090", "uniprot_accession": "Q811D2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3496-ipr021885.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021885", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3496-ipr021885.yaml" } ], "pfam_ids": [ "PF00023", "PF12001", "PF12796", "PF14915" ], "protein_name": "Ankyrin repeat domain-containing protein 18A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKLFSFGRRLGQALLSSMDQEYAGPGYDIRDWELRKIHRAAIKGDAAEVERCLTRRFRDLDARDRKDRTVLHLACAHGRVQVVTLLLHRRCQIDICDRLNRTPLMKAVHSQEEACAIVLLECGANPNIEDIYGNTALHYAVYNKGTSLAERLLSHHANIEALNKEGNTPLLFAINSRRQHMVEFLLKNQANIHAVDNFKRTALILAVQHNLSSIVTLLLQQNIRISSQDMFGQTAEDYALCSDLRSIRQQILEHKNKMLKNHLRNDNQETAAMKPANLKKRKERAKAEHNLKVASEEKQERLQRSENKQPQDSQSYGKKKDAMYGNFMLKKDIAMLKEELYAIKNDSLRKEKKYIQEIKSITEINANFEKSVRLNEKMITKTVARYSQQLNDLKAENARLNSELEKEKHNKERLEAEVESLHSSLATAINEYNEIVERKDLELVLWRADDVSRHEKMGSNISQLTDKNELLTEQVHKARVKFNTLKGKLRETRDALREKTLALGSVQLDLRQAQHRIKEMKQMHPNGEAKESQSIGKQNSLEERIRQQELENLLLERQLEDARKEGDNKEIVINIHRDCLENGKEDLLEERNKELMKEYNYLKEKLLQCEKEKAEREVIVREFQEELVDHLKTFSISESPLEGTSHCHINLNETWTSKKKLFQVEIQPEEKHEEFRKLFELISLLNYTADQIRKKNRELEEEATGYKKCLEMTINMLNAFANEDFSCHGDLNTDQLKMDILFKKLKQKFNDLVAEKEAVSSECVNLAKDNEVLHQELLSMRNVQEKCEKLEKDKKMLEEEVLNLKTHMEKDMVELGKLQEYKSELDERAVQEIEKLEEIHLQKQAEYEKQLEQLNKDNTASLKKKELTLKDVECKFSKMKTAYEEVTTELEEFKEAFAGAVKANNSMSKKLMKSDKKIAVISTKLFTEKQRMKYFLSTLPTRPEPELPCVENLNSIELNRKYIPKTAIRIPTSNPQTSNNCKNFLTEVLLC", "sequence_length": 992, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b242e6132e41f600df970da8d4372bbeb2a3756f8f62c445ee3d1331753f0b6", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IVF6.json", "taxon_id": "9606", "uniprot_accession": "Q8IVF6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccdc144c-like-coiled-coil-domain-ipr039497.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039497", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccdc144c-like-coiled-coil-domain-ipr039497.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3496-ipr021885.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021885", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3496-ipr021885.yaml" } ], "pfam_ids": [ "PF12001", "PF14915" ], "protein_name": "Putative coiled-coil domain-containing protein 144C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSWGGEKRGGAEGSPKPAVYATRKTGSVRSQEDQWYLGYPGDQWSSGFSYSWWKNSVGSESKHGEGALDQPQHDVRLEDLGELHRAARSGDVPGVEHVLVPGDTGVDKRDRKKSIQQLVPEYKEKQTPESLPQNNNPDWHPTNLTLSDETCQRSKNLKVDDKCPSVSPSMPENQSATKELGQMNLTEREKMDTGVKTSQEPEMAKDCDREDIPIYPVLPHVQKSEEMRIEQGKLEWKNQLKLVINELKQRFGEIYEKYKIPACPEEEPLLDNSTRGTDVKDIPFNLTNNIPGCEEEDASEISVSVVFETFPEQKEPSLKNIIHSYYHPYSGSQEHVCQSSSKLHLHENKLDCDNDNKPGIGHIFSTDKNFHNDASTKKARNPEVVTVEMKEDQEFDLQMTKNMNQNSDSGSTNNYKSLKPKLENLSSLPPDSDRTSEVYLHEELQQDMQKFKNEVNTLEEEFLALKKENVQLHKEVEEEMEKHRSNSTELSGTLTDGTTVGNDDDGLNQQIPRKENGEHDRLALKQENEEKRNADMLYNKDSEQLRIKEEECGKVVETKQQLKWNLRRLVKELRTVVQERNDAQKQLSEEQDARILQDQILTSKQKELEMAQKKRNPEISHRHQKEKDLFHENCMLQEEIALLRLEIDTIKNQNKQKEKKYFEDIEVVKEKNDNLQKIIKRNEETLTETILQYSGQLNNLTAENKMLNSELENGKENQERLEIEMESYRCRLAAAVHDCDQSQTARDLKLDFQRTRQEWVRLHDKMKVDMSGLQAKNEILSEKLSNAESKINSLQIQLHNTRDALGRESLILERVQRDLSQTQCQKKETEQMYQSKLKKYIAKQESVEERLSQLQSENMLLRQQLDDVHKKANSQEKTISTIQDQFHSAAKNLQAESEKQILSLQEKNKELMDEYNHLKERMDQCEKEKAGRKIDLTEAQETVPSRCLHLDAENEVLQLQQTLFSMKAIQKQCETLQKNKKQLKQEVVNLKSYMERNMLERGEAEWHKLLIEERARKEIEEKLNEAILTLQKQAAVSHEQLAQLREDNTTSIKTQMELTVIDLESEISRIKTSQADFNKTKLERYKELYLEEVKVRESLSNELSRTNEMIAEVSTQLTVEKEQTRSRSLFTAYATRPVLESPCVGNLNDSEGLNRKHIPRKKRSALKDMESYLLKMQQKLQNDLTAEVAGSSQTGLHRIPQCSSFSSSSLHLLLCSICQPFFLILQLLLNMNLDPI", "sequence_length": 1237, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "30311b60d41b9a0848b5e1e4ffb84c6e663ef61e6d5d8594ec1bbfdc674c150a", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IYA2.json", "taxon_id": "9606", "uniprot_accession": "Q8IYA2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3496-ipr021885.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021885", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3496-ipr021885.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccdc144c-pf14915.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14915", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccdc144c-pf14915.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3496-pf12001.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3496-pf12001.yaml" } ], "pfam_ids": [ "PF00023", "PF12001", "PF12796", "PF14915" ], "protein_name": "Ankyrin repeat domain-containing protein 26", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKIFSKKGESPLGSFARRQRSSAGGGGEPGEGAYSQPGYHVRDRDLGKIHKAASAGNVAKVQQILLLRKNGLNDRDKMNRTALHLACANGHPEVVTLLVDRKCQLNVCDNENRTALMKAVQCQEEKCATILLEHGADPNLADVHGNTALHYAVYNEDISVATKLLLYDANIEAKNKDDLTPLLLAVSGKKQQMVEFLIKKKANVNAVDKLESSHQLISEYKEERIPKHSSQNSNSVDESSEDSLSRLSGKPGVDDSWPTSDDEDLNFDTKNVPKPSLAKLMTASQQSRKNLEATYGTVRTGNRTLFEDRDSDSQDEVVVESLPTTSIKVQCFSHPTYQSPDLLPKPSHKSLANPGLMKEEPTKPGIAKKENGIDIIESAPLEQTNNDNLTYVDEVHKNNRSDMMSALGLGQEEDIESPWDSESISENFPQKYVDPLAGAADGKEKNIGNEQAEDVFYIPSCMSGSRNFKMAKLEDTRNVGMPVAHMESPERYLHLKPTIEMKDSVPNKAGGMKDVQTSKAAEHDLEVASEEEQEREGSENNQPQVEEERKKHRNNEMEVSANIHDGATDDAEDDDDDDGLIQKRKSGETDHQQFPRKENKEYASSGPALQMKEVKSTEKEKRTSKESVNSPVFGKASLLTGGLLQVDDDSSLSEIDEDEGRPTKKTSNEKNKVKNQIQSMDDVDDLTQSSETASEDCELPHSSYKNFMLLIEQLGMECKDSVSLLKIQDAALSCERLLELKKNHCELLTVKIKKMEDKVNVLQRELSETKEIKSQLEHQKVEWERELCSLRFSLNQEEEKRRNADTLYEKIREQLRRKEEQYRKEVEVKQQLELSLQTLEMELRTVKSNLNQVVQERNDAQRQLSREQNARMLQDGILTNHLSKQKEIEMAQKKMNSENSHSHEEEKDLSHKNSMLQEEIAMLRLEIDTIKNQNQEKEKKCFEDLKIVKEKNEDLQKTIKQNEETLTQTISQYNGRLSVLTAENAMLNSKLENEKQSKERLEAEVESYHSRLAAAIHDRDQSETSKRELELAFQRARDECSRLQDKMNFDVSNLKDNNEILSQQLFKTESKLNSLEIEFHHTRDALREKTLGLERVQKDLSQTQCQMKEMEQKYQNEQVKVNKYIGKQESVEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFHAIVQKLQAESEKQSLLLEERNKELISECNHLKERQYQYENEKAEREVVVRQLQQELADTLKKQSMSEASLEVTSRYRINLEDETQDLKKKLGQIRNQLQEAQDRHTEAVRCAEKMQDHKQKLEKDNAKLKVTVKKQMDKIEELQKNLLNANLSEDEKEQLKKLMELKQSLECNLDQEMKKNVELEREITGFKNLLKMTRKKLNEYENGEFSFHGDLKTSQFEMDIQINKLKHKIDDLTAELETAGSKCLHLDTKNQILQEELLSMKTVQKKCEKLQKNKKKLEQEVINLRSHIERNMVELGQVKQYKQEIEERARQEIAEKLKEVNLFLQAQAASQENLEQFRENNFASMKSQMELRIKDLESELSKIKTSQEDFNKTELEKYKQLYLEELKVRKSLSSKLTKTNERLAEVNTKLLVEKQQSRSLFTTLTTRPVMEPPCVGNLNNSLDLNRKLIPRENLVISTSNPRASNNSMENYLSKMQQELEKNITRELKEAAAELESGSIASPLGSTDESNLNQDLVWKASREYVQVLKKNYMI", "sequence_length": 1710, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5be93c2be7e326b7c05dd71ea7a502b60f8e29648f54015180f598d47147f589", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UPS8.json", "taxon_id": "9606", "uniprot_accession": "Q9UPS8", "uniprot_release": "2026_03" } ], "pfam_id": "PF12001", "short_name": "DUF3496", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:F6SEU4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00168", "PF00616", "PF12004", "PF25321" ], "protein_name": "Ras/Rap GTPase-activating protein SynGAP", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c1a4a16254c990c6ae5500c81e43297b4c6945150e7284939480236a873857ff", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSRSRASIHRGSIPAMSYAPFRDVRGPPMHRTQYVHSPYDRPGWNPRFCIISGNQLLMLDEDEIHPLLIRDRRSESSRNKLLRRTVSVPVEGRPHGEHEYHLGRSRRKSVPGGKQYSMEAAPAAPFRPSQGFLSRRLKSSIKRTKSQPKLDRTSSFRQILPRFRSADHDRARLMQSFKESHSHESLLSPSSAAEALELNLDEDSIIKPVHSSILGQEFCFEVTTSSGTKCFACRSAAERDKWIENLQRAVKPNKDNSRRVDNVLKLWIIEARELPPKKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYVTNHYRMLCAVLEPALNVKGKEEVASALVHILQSTGKAKDFLSDMAMSEVDRFMEREHLIFRENTLATKAIEEYMRLIGQKYLKDAIGEFIRALYESEENCEVDPIKCTASSLAEHQANLRMCCELALCKVVNSHCVFPRELKEVFASWRLRCAERGREDIADRLISASLFLRFLCPAIMSPSLFGLMQEYPDEQTSRTLTLIAKVIQNLANFSKFTSKEDFLGFMNEFLELEWGSMQQFLYEISNLDTLTNSSSFEGYIDLGRELSTLHALLWEVLPQLSKEALLKLGPLPRLLNDISTALRNPNIQRQPSRQSERTRSQPMVLRGPSAEMQGYMMRDLNSSIDLQSFMARGLNSSMDMARLPSPTKEKPPPPPPGGGKDLFYVSRPPLARSSPAYCTSSSDITEPEQKMLSVNKSVSMLDLQGDGPGGRLNSSSVSNLAAVGDLLHSSQASLTAALGLRPAPAGRLSQGSGSSITAAGMRLSQMGVTTDGVPAQQLRIPLSFQNPLFHMAADGPGPPAGHGGSSGHGPPSSHHHHHHHHHHRGGEPPGDTFAPFHGYSKSEDLSSGVPKPPAASILHSHSYSDEFGPSGTDFTRRQLSLQDSLQHMLSPPQITIGPQRPAPSGPGGGSGGGSGGGQPPPLQRGKSQQLTVSAAQKPRPSSGNLLQSPEPSYGPARPRQQSLSKEGSIGGSGGSGGGGGGGLKPSITKQHSQTPSTLNPTMPASERTVAWVSNMPHLSADIESAHIEREEYKLKEYSKSMDESRLDRVKEYEEEIHSLKERLHMSNRKLEEYERRLLSQEEQTSKILMQYQARLEQSEKRLRQQQVEKDSQIKSIIGRLMLVEEELRRDHPAMAEPLPEPKKRLLDAQERQLPPLGPTNPRVTLAPPWNGLAPPAPPPPPRLQITENGEFRNTADH", "sequence_length": 1340, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c1a4a16254c990c6ae5500c81e43297b4c6945150e7284939480236a873857ff", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/F6SEU4.json", "taxon_id": "10090", "uniprot_accession": "F6SEU4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dab2p-c-pf12004.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12004", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dab2p-c-pf12004.yaml" } ], "pfam_ids": [ "PF00168", "PF00616", "PF12004", "PF25321" ], "protein_name": "Disabled homolog 2-interacting protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAGGSARKSTGRSSYYYRLLRRPRLQRQRSRSRSRTRPARESPQERPGSRRSLPGSLSEKSPSMEPSAATPFRVTGFLSRRLKGSIKRTKSQPKLDRNHSFRHILPGFRSAAAAAADNERSHLMPRLKESRSHESLLSPSSAVEALDLSMEEEVVIKPVHSSILGQDYCFEVTTSSGSKCFSCRSAAERDKWMENLRRAVHPNKDNSRRVEHILKLWVIEAKDLPAKKKYLCELCLDDVLYARTTGKLKTDNVFWGEHFEFHNLPPLRTVTVHLYRETDKKKKKERNSYLGLVSLPAASVAGRQFVEKWYPVVTPNPKGGKGPGPMIRIKARYQTITILPMEMYKEFAEHITNHYLGLCAALEPILSAKTKEEMASALVHILQSTGKVKDFLTDLMMSEVDRCGDNEHLIFRENTLATKAIEEYLKLVGQKYLQDALGEFIKALYESDENCEVDPSKCSAADLPEHQGNLKMCCELAFCKIINSYCVFPRELKEVFASWRQECSSRGRPDISERLISASLFLRFLCPAIMSPSLFNLLQEYPDDRTARTLTLIAKVTQNLANFAKFGSKEEYMSFMNQFLEHEWTNMQRFLLEISNPETLSNTAGFEGYIDLGRELSSLHSLLWEAVSQLEQSIVSKLGPLPRILRDVHTALSTPGSGQLPGTNDLASTPGSGSSSISAGLQKMVIENDLSGLIDFTRLPSPTPENKDLFFVTRSSGVQPSPARSSSYSEANEPDLQMANGGKSLSMVDLQDARTLDGEAGSPAGPDVLPTDGQAAAAQLVAGWPARATPVNLAGLATVRRAGQTPTTPGTSEGAPGRPQLLAPLSFQNPVYQMAAGLPLSPRGLGDSGSEGHSSLSSHSNSEELAAAAKLGSFSTAAEELARRPGELARRQMSLTEKGGQPTVPRQNSAGPQRRIDQPPPPPPPPPPAPRGRTPPNLLSTLQYPRPSSGTLASASPDWVGPSTRLRQQSSSSKGDSPELKPRAVHKQGPSPVSPNALDRTAAWLLTMNAQLLEDEGLGPDPPHRDRLRSKDELSQAEKDLAVLQDKLRISTKKLEEYETLFKCQEETTQKLVLEYQARLEEGEERLRRQQEDKDIQMKGIISRLMSVEEELKKDHAEMQAAVDSKQKIIDAQEKRIASLDAANARLMSALTQLKERYSMQARNGISPTNPTKLQITENGEFRNSSNC", "sequence_length": 1189, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e3056664d88810d4a2dbf968be52e6fbc598c35e03230a59300f245a98386bb8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VWQ8.json", "taxon_id": "9606", "uniprot_accession": "Q5VWQ8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dab2p-c-pf12004.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12004", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dab2p-c-pf12004.yaml" } ], "pfam_ids": [ "PF00168", "PF00616", "PF12004", "PF25321" ], "protein_name": "Ras/Rap GTPase-activating protein SynGAP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRSRASIHRGSIPAMSYAPFRDVRGPSMHRTQYVHSPYDRPGWNPRFCIISGNQLLMLDEDEIHPLLIRDRRSESSRNKLLRRTVSVPVEGRPHGEHEYHLGRSRRKSVPGGKQYSMEGAPAAPFRPSQGFLSRRLKSSIKRTKSQPKLDRTSSFRQILPRFRSADHDRARLMQSFKESHSHESLLSPSSAAEALELNLDEDSIIKPVHSSILGQEFCFEVTTSSGTKCFACRSAAERDKWIENLQRAVKPNKDNSRRVDNVLKLWIIEARELPPKKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYVTNHYRMLCAVLEPALNVKGKEEVASALVHILQSTGKAKDFLSDMAMSEVDRFMEREHLIFRENTLATKAIEEYMRLIGQKYLKDAIGEFIRALYESEENCEVDPIKCTASSLAEHQANLRMCCELALCKVVNSHCVFPRELKEVFASWRLRCAERGREDIADRLISASLFLRFLCPAIMSPSLFGLMQEYPDEQTSRTLTLIAKVIQNLANFSKFTSKEDFLGFMNEFLELEWGSMQQFLYEISNLDTLTNSSSFEGYIDLGRELSTLHALLWEVLPQLSKEALLKLGPLPRLLNDISTALRNPNIQRQPSRQSERPRPQPVVLRGPSAEMQGYMMRDLNSSIDLQSFMARGLNSSMDMARLPSPTKEKPPPPPPGGGKDLFYVSRPPLARSSPAYCTSSSDITEPEQKMLSVNKSVSMLDLQGDGPGGRLNSSSVSNLAAVGDLLHSSQASLTAALGLRPAPAGRLSQGSGSSITAAGMRLSQMGVTTDGVPAQQLRIPLSFQNPLFHMAADGPGPPGGHGGGGGHGPPSSHHHHHHHHHHRGGEPPGDTFAPFHGYSKSEDLSSGVPKPPAASILHSHSYSDEFGPSGTDFTRRQLSLQDNLQHMLSPPQITIGPQRPAPSGPGGGSGGGSGGGGGGQPPPLQRGKSQQLTVSAAQKPRPSSGNLLQSPEPSYGPARPRQQSLSKEGSIGGSGGSGGGGGGGLKPSITKQHSQTPSTLNPTMPASERTVAWVSNMPHLSADIESAHIEREEYKLKEYSKSMDESRLDRVKEYEEEIHSLKERLHMSNRKLEEYERRLLSQEEQTSKILMQYQARLEQSEKRLRQQQAEKDSQIKSIIGRLMLVEEELRRDHPAMAEPLPEPKKRLLDAQERQLPPLGPTNPRVTLAPPWNGLAPPAPPPPPRLQITENGEFRNTADH", "sequence_length": 1343, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ef87384ae0d22f8146605662bab831fd2b0a1d215cc371a0a91245d1c84ab30c", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q96PV0.json", "taxon_id": "9606", "uniprot_accession": "Q96PV0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dab2p-c-pf12004.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12004", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dab2p-c-pf12004.yaml" } ], "pfam_ids": [ "PF00168", "PF00616", "PF12004", "PF25321" ], "protein_name": "Ras GTPase-activating protein nGAP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQTPEVPAERSPRRRSISGTSTSEKPNSMDTANTSPFKVPGFFSKRLKGSIKRTKSQSKLDRNTSFRLPSLRSTDDRSRGLPKLKESRSHESLLSPCSTVECLDLGRGEPVSVKPLHSSILGQDFCFEVTYLSGSKCFSCNSASERDKWMENLRRTVQPNKDNCRRAENVLRLWIIEAKDLAPKKKYFCELCLDDTLFARTTSKTKADNIFWGEHFEFFSLPPLHSITVHIYKDVEKKKKKDKNNYVGLVNIPTASVTGRQFVEKWYPVSTPTPNKGKTGGPSIRIKSRFQTITILPMEQYKEFAEFVTSNYTMLCSVLEPVISVRNKEELACALVHILQSTGRAKDFLTDLVMSEVDRCGEHDVLIFRENTIATKSIEEYLKLVGQQYLHDALGEFIKALYESDENCEVDPSKCSSSELIDHQSNLKMCCELAFCKIINSYCVFPRELKEVFASWKQQCLNRGKQDISERLISASLFLRFLCPAIMSPSLFNLMQEYPDDRTSRTLTLIAKVIQNLANFAKFGNKEEYMAFMNDFLEHEWGGMKRFLLEISNPDTISNTPGFDGYIDLGRELSVLHSLLWEVVSQLDKGENSFLQATVAKLGPLPRVLADITKSLTNPTPIQQQLRRFTEHNSSPNVSGSLSSGLQKIFEDPTDSDLHKLKSPSQDNTDSYFRGKTLLLVQQASSQSMTYSEKDERESSLPNGRSVSLMDLQDTHAAQVEHASVMLDVPIRLTGSQLSITQVASIKQLRETQSTPQSAPQVRRPLHPALNQPGGLQPLSFQNPVYHLNNPIPAMPKASIDSSLENLSTASSRSQSNSEDFKLSGPSNSSMEDFTKRSTQSEDFSRRHTVPDRHIPLALPRQNSTGQAQIRKVDQGGLGARAKAPPSLPHSASLRSTGSMSVVSAALVAEPVQNGSRSRQQSSSSRESPVPKVRAIQRQQTQQVQSPVDSATMSPVERTAAWVLNNGQYEEDVEETEQNLDEAKHAEKYEQEITKLKERLRVSSRRLEEYERRLLVQEQQMQKLLLEYKARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELKKDHAEMQAVIDAKQKIIDAQEKRIVSLDSANTRLMSALTQVKERYSMQVRNGISPTNPTKLSITENGEFKNSSC", "sequence_length": 1139, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4a4788223b0e1d639a4e1edffd2be8f9926bbdbd9e84bba92e45607b5a9af367", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UJF2.json", "taxon_id": "9606", "uniprot_accession": "Q9UJF2", "uniprot_release": "2026_03" } ], "pfam_id": "PF12004", "short_name": "DAB2P_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12005", "short_name": "DUF3499", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12006", "short_name": "DUF3500", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12007", "short_name": "DUF3501", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3502-pf12010.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3502-pf12010.yaml" } ], "pfam_ids": [ "PF12010", "PF13416" ], "protein_name": "Carbohydrate ABC transporter substrate-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNWKKYAFASASVVALAAGLAACGNLTGNSKKAADSGDKPVIKMYQIGDKPDNLDELLANANKIIEEKVGAKLDIQYLGWGDYGKKMSVITSSGENYDIAFADNYIVNAQKGAYADLTELYKKEGKDLYKALDPAYIKGNTVNGKIYAVPVAANVASSQNFAFNGTLLAKYGIDISGVTSYETLEPVLKQIKEKAPDVVPFAIGKVFIPSDNFDYPVANGLPFVIDLEGDTTKVVNRYEVPRFKEHLKTLHKFYEAGYIPKDVATSDTSFDLQQDTWFVREETVGPADYGNSLLSRVANKDIQIKPITNFIKKNQTTQVANFVISNNSKNKEKSMEILNLLNTNPELLNGLVYGPEGKNWEKIEGKENRVRVLDGYKGNTHMGGWNTGNNWILYINENVTDQQIENSKKELAEAKESPALGFIFNTDNVKSEISAIANTMQQFDTAINTGTVDPDKAIPELMEKLKSEGAYEKVLNEMQKQYDEFLKNKK", "sequence_length": 491, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fa9864f31fc6251a0f6d166ffd1542a41b1fd51fee6cc3c9622c1ed3df187982", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0H2UMY0.json", "taxon_id": "170187", "uniprot_accession": "A0A0H2UMY0", "uniprot_release": "2026_03" } ], "pfam_id": "PF12010", "short_name": "DUF3502", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12011", "short_name": "NPH-II", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 10, "discovery_scanned": true, "example_count": 10, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/qrich1-like-domain-ipr057926.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/qrich1-like-domain-ipr057926.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/qrich1-pf25561.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25561", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/qrich1-pf25561.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trash-zmym4-pf24900.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trash-zmym4-pf24900.yaml" } ], "pfam_ids": [ "PF06467", "PF12012", "PF24900", "PF25561" ], "protein_name": "Zinc finger MYM-type protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEREVETGPRKRFEQKSDAVFDEIVENCGVMDTEMSEDTDHNLTPTLASMSYGMPNQTGSENSLLDEDDYFLNSGDLAGIPVVSSDNEDEQDCSSKDNLVSSVHTDGSLEVERRAAHQESDNENEIQIQNQLKKDFPKQFDQVSVFKSIRKDFCLVRENSKETFSGKEKNRDLTYHEREKRLDKPHKGLDSRLKSSFFDKAANQVEETLHTHLPQNPETNFRDSSYPFASKESIGSELGNSFASNIRIKEEPLDDEYDRAVAPQQGLLDRVKDEPDNAQEYSHGQQQKTQEGELKISAVFSVSGSPLAPQLTTGFQPSLASPGMNKMLPSVPATAVRVSCSGCKKILQKGQTAYQRKGSTQLFCSTLCLTGYTVPPARPPPPLTKKTCSSCSKDILNPKDVISAQFENSTTSKDFCSQSCLSTYELKKKPIVTINTNSISTKCSMCQKNAVIRHEVNYQNVVHKLCSDACFSKFRSANNLTMNCCENCGGYCYSGSGQCHVLQIEGQSKKFCSSMCVTSYKQKSAKITPCALCKSLRSSAEMIENTNSLGKTELFCSVNCLSAYRVKMVTSAGVQVQCNSCKTSAIPQYHLAMSDGSIRNFCSYSCVVAFQNLFNKPTGMNSSVVPLSQGQVIVSIPTGSSASAGGGSTPAVSPTSINSSAAAGLQRLAAQSQHVGFARSVVKLRCQHCNRLFATKPELLDYKGKMFQFCGKNCCDEYKKINNVMAMCEYCKIEKIIKETVRFSGADKSFCSEGCKLLYKHDLGKRWGSHCKMCSYCLQTSPKLIQNNLGGKVEDFCCEECMSKYTVLFYQMAKCDGCKRQGKLSESLKWRGDIKHFCNLLCILMFCHQQTVCDPPLQNNAVASISMVQAASAGPPSLRKDSTPVIANVVSLASAPAAQPTANTNSVLQGAVPTVTAKIIGDASTQTDALKLPPSQPPRLLKNKALLCKPITQTKATSCKPHTQNKECQTDTPSEPQVMVVPVPVPVFVPIPLHLYTQYTPVPFGIPVPMPVPMFIPSSMDNDEKATEGIEDIKEKLATHPFEADLLEMAEMIAEDEEKEKTLSQGESQTSEQELFLDTKIFEKDQGSTYSGDLESEAVSTPHSWEEELNHYALKSNAVQDADSELKPFSKGETEQDLEADFPSESFDPLNKGQGIQARSRTRRRHRDGFPQPRRRGRKKSVVPVEPRSLIQGALQGCSVSGMTLKYMYGVNAWKNWVQWKNAKDEQGDLKCGGGELASASPCSDSLGSAQDHALSQESSEQGCKARSVKLKEDILSCTFSELSLGLCQFIQEVRRPNGEKYDPDSILYLCLGIQQYLFENGRIDNIFTEPYSRFMIELTKLLKIWEPTILPNGYMFSRIEEEHLWECKQLGAYSPIVLLNTLLFFNTKYFQLRNVTEHLKLSFAHVMRRTRTLKYSTKMTYLRFFPPLQKPESEPDKVTIGKRKRNEDDEAPVGVEMAENTDNPLRCPVRLYEFYLSKCSESVKQRSDVFYLQPERSCVPNSPMWYSTFPIDPGTLDTMLTRILMVREVHEELAKAKSEDSDAELSD", "sequence_length": 1549, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a8622ecee3ef9b9921572be8891a36d153c7b39a20766f0eefbb2019af221eb5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2A791.json", "taxon_id": "10090", "uniprot_accession": "A2A791", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/qrich1-like-domain-ipr057926.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/qrich1-like-domain-ipr057926.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zmym2-like-qrich1-c-terminal-domain-ipr021893.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021893", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zmym2-like-qrich1-c-terminal-domain-ipr021893.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/qrich1-pf25561.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25561", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/qrich1-pf25561.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3504-pf12012.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3504-pf12012.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q14202", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06467", "PF12012", "PF25561" ], "protein_name": "Zinc finger MYM-type protein 3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "2d8e92b90ea07255c4963bf1e1de91f7f780dfa041a5a9b3f5939f55258fe5a1", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDPSDFPSPFDPLTLPEKPLAGDLPVDMEFGEDLLESQTAPTRGWAPPGPSPSSGALDLLDTPAGLEKDPGVLDGATELLGLGGLLYKAPSPPEVDHGPEGTLAWDAGDQTLEPGPGGQTPEVVPPDPGAGANSCSPEGLLEPLAPDSPITLQSPHIEEEETTSIATARRGSPGQEEELPQGQPQSPNAPPSPSVGETLGDGINSSQTKPGGSSPPAHPSLPGDGLTAKASEKPPERKRSERVRRAEPPKPEVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPRRSPRMSLRSSVSQRAGRSAVGTKMTCAHCRTPLQKGQTAYQRKGLPQLFCSSSCLTTFSKKPSGKKTCTFCKKEIWNTKDSVVAQTGSGGSFHEFCTSVCLSLYEAQQQRPIPQSGDPADATRCSICQKTGEVLHEVSNGSVVHRLCSDSCFSKFRANKGLKTNCCDQCGAYIYTKTGSPGPELLFHEGQQKRFCNTTCLGAYKKKNTRVYPCVWCKTLCKNFEMLSHVDRNGKTSLFCSLCCTTSYKVKQAGLTGPPRPCSFCRRSLSDPCYYNKVDRTVYQFCSPSCWTKFQRTSPEGGIHLSCHYCHSLFSGKPEVLDWQDQVFQFCCRDCCEDFKRLRGVVSQCEHCRQEKLLHEKLRFSGVEKSFCSEGCVLLYKQDFTKKLGLCCITCTYCSQTCQRGVTEQLDGSTWDFCSEDCKSKYLLWYCKAARCHACKRQGKLLETIHWRGQIRHFCNQQCLLRFYSQQNQPNLDTQSGPESLLNSQSPESKPQTPSQTKVENSNTVRTPEENGNLGKIPVKTRSAPTAPTPPPPPPPATPRKNKAAMCKPLMQNRGVSCKVEMKSKGSQTEEWKPQVIVLPIPVPIFVPVPMHLYCQKVPVPFSMPIPVPVPMFLPTTLESTDKIVETIEELKVKIPSNPLEADILAMAEMIAEAEELDKASSDLCDLVSNQSAEGLLEDCDLFGPARDDVLAMAVKMANVLDEPGQDLEADFPKNPLDINPSVDFLFDCGLVGPEDVSTEQDLPRTMRKGQKRLVLSESCSRDSMSSQPSCTGLNYSYGVNAWKCWVQSKYANGETSKGDELRFGPKPMRIKEDILACSAAELNYGLAQFVREITRPNGERYEPDSIYYLCLGIQQYLLENNRMVNIFTDLYYLTFVQELNKSLSTWQPTLLPNNTVFSRVEEEHLWECKQLGVYSPFVLLNTLMFFNTKFFGLQTAEEHMQLSFTNVVRQSRKCTTPRGTTKVVSIRYYAPVRQRKGRDTGPGKRKREDEAPILEQRENRMNPLRCPVKFYEFYLSKCPESLRTRNDVFYLQPERSCIAESPLWYSVIPMDRSMLESMLNRILAVREIYEELGRPGEEDLD", "sequence_length": 1370, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2d8e92b90ea07255c4963bf1e1de91f7f780dfa041a5a9b3f5939f55258fe5a1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q14202.json", "taxon_id": "9606", "uniprot_accession": "Q14202", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/caspase-activation-and-recruitment-domain-a-protein-protein-interactio-cd01671.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd01671", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/caspase-activation-and-recruitment-domain-a-protein-protein-interactio-cd01671.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/qrich1-like-domain-ipr057926.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/qrich1-like-domain-ipr057926.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zmym2-like-qrich1-c-terminal-domain-ipr021893.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021893", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zmym2-like-qrich1-c-terminal-domain-ipr021893.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/qrich1-pf25561.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25561", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/qrich1-pf25561.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3504-pf12012.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3504-pf12012.yaml" } ], "pfam_ids": [ "PF12012", "PF25561" ], "protein_name": "Transcriptional regulator QRICH1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNSLENTISFEEYIRVKARSVPQHRMKEFLDSLASKGPEALQEFQQTATTTMVYQQGGNCIYTDSTEVAGSLLELACPVTTSVQPQTQQEQQIQVQQPQQVQVQVQVQQSPQQVSAQLSPQLTVHQPTEQPIQVQVQIQGQAPQSAAPSIQTPSLQSPSPSQLQAAQIQVQHVQAAQQIQAAEIPEEHIPHQQIQAQLVAGQSLAGGQQIQIQTVGALSPPPSQQGSPREGERRVGTASVLQPVKKRKVDMPITVSYAISGQPVATVLAIPQGQQQSYVSLRPDLLTVDSAHLYSATGTITSPTGETWTIPVYSAQPRGDPQQQSITHIAIPQEAYNAVHVSGSPTALAAVKLEDDKEKMVGTTSVVKNSHEEVVQTLANSLFPAQFMNGNIHIPVAVQAVAGTYQNTAQTVHIWDPQQQPQQQTPQEQTPPPQQQQQQLQVTCSAQTVQVAEVEPQSQPQPSPELLLPNSLKPEEGLEVWKNWAQTKNAELEKDAQNRLAPIGRRQLLRFQEDLISSAVAELNYGLCLMTREARNGEGEPYDPDVLYYIFLCIQKYLFENGRVDDIFSDLYYVRFTEWLHEVLKDVQPRVTPLGYVLPSHVTEEMLWECKQLGAHSPSTLLTTLMFFNTKYFLLKTVDQHMKLAFSKVLRQTKKNPSNPKDKSTSIRYLKALGIHQTGQKVTDDMYAEQTENPENPLRCPIKLYDFYLFKCPQSVKGRNDTFYLTPEPVVAPNSPIWYSVQPISREQMGQMLTRILVIREIQEAIAVANASTMH", "sequence_length": 776, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "224df6b2f70a44884fd42d76009e26f46247c9bc11e49dd23e7805b2dcfe5f48", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2TAL8.json", "taxon_id": "9606", "uniprot_accession": "Q2TAL8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/caspase-activation-and-recruitment-domain-a-protein-protein-interactio-cd01671.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd01671", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/caspase-activation-and-recruitment-domain-a-protein-protein-interactio-cd01671.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/qrich1-like-domain-ipr057926.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/qrich1-like-domain-ipr057926.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zmym2-like-qrich1-c-terminal-domain-ipr021893.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021893", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zmym2-like-qrich1-c-terminal-domain-ipr021893.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/qrich1-pf25561.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25561", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/qrich1-pf25561.yaml" } ], "pfam_ids": [ "PF12012", "PF25561" ], "protein_name": "Transcriptional regulator QRICH1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNSLENTISFEEYIRVKARSVPQHRMKEFLDSLASKGPEALQEFQQTATTTMVYQQGGNCIYTDSTEVAGSLLELACPVTTSVQPQTQQEQQIQVQQPQQVQVQVQVQQSPQQVSAQQLSPQFTVHQPAEQPIQVQVQIQGQAPQSAAPSIQTPSLQSPSPSQLQAAQIQVQHVQAAQQIQAAEIPEEHIPHQQIQAQLVAGQSLAGGQQIQIQTVGALSPPPSQQGSPREGERRVGTASVLQPVKKRKVDMPITVSYAISGQPVATVLAIPQGQQQSYVSLRPDLLTVDSAHLYSATGTITSPTGETWTIPVYSAQPRGDPQQQSITHIAIPQEAYNAVHVSGSPKALAAVKLEDDKEKMVGTTSVVKNSHEEVVQTLANSLFPAQFMNGNIHIPVAVQAVAGTYQNTAQTVHIWDPQQQPQQQTAQEQTPPPQQQQQQLQVTCSAQTVQVAEVEPQSQPQPSPELLLPNSLKPEEGLEVWKNWAQTKNAELEKDAQNRLAPIGRRQLLRFQEDLISSAVAELNYGLCLMTREARNGEGEPYDPDVLYYIFLCIQKYLFENGRVDDIFSDLYYVRFTEWLHEVLKDVQPRVTPLGYVLPSHVTEEMLWECKQLGAHSPSTLLTTLMFFNTKYFLLKTVDQHMKLAFSKVLRQTKKSPSNPKDKSTSIRYLKALGIHQTGQKVTDDMYAEQTENPENPLRCPIKLYDFYLFKCPQSVKGRNDTFYLTPEPVVAPNSPIWYSVQPISREQMGQMLTRILVIREIQEAIAVANATTMH", "sequence_length": 777, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "67fa32dab24b769411e655fdb3d285b6d84f09557105ff90d9d89a1e91402ca7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UA37.json", "taxon_id": "10090", "uniprot_accession": "Q3UA37", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/qrich1-like-domain-ipr057926.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/qrich1-like-domain-ipr057926.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/qrich1-pf25561.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25561", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/qrich1-pf25561.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trash-zmym4-pf24900.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trash-zmym4-pf24900.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3504-pf12012.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3504-pf12012.yaml" } ], "pfam_ids": [ "PF06467", "PF12012", "PF24900", "PF25561" ], "protein_name": "Zinc finger MYM-type protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEREVESGPRKRFEQKSGAVFDEIVENCGGIMDTEMSEDIDHNLTPTLDSMSYGMPNQTGSENSLLDEDDYFLNSGDLAGIPVVGSDNEDEQDFSSKDNLVSSIHTDDSLEVERRVTQHESDNENEIQIQNKLKKDFPKQFDQVSVFKSIRKDFSLVRENSKETFSGKEKNRDLTYEREKRLDKPHKDLDSRLKSSFFDKAANQVEETLHTHLPQTPETNFRDSSYPFANKESIGSELGNSFASNIRIKEEPLDDEYDKAMAPQQGLLDKIKDEPDNAQEYSHGQQQKTQEGELKISAVFSVSGSPLAPQLTTGFQPSLASSGMNKMLPSVPATAVRVSCSGCKKILQKGQTAYQRKGSTQLFCSTLCLTGYTVPPARPPPPLTKKTCSSCSKDILNPKDVISAQFENTTTSKDFCSQSCLSTYELKKKPIVTINTNSISTKCSMCQKNAVIRHEVNYQNVVHKLCSDACFSKFRSANNLTMNCCENCGGYCYSGSGQCHMLQIEGQSKKFCSSSCITAYKQKSAKITPCALCKSLRSSAEMIENTNSLGKTELFCSVNCLSAYRVKMVTSAGVQVQCNSCKTSAIPQYHLAMSDGSIRNFCSYSCVVAFQNLFNKPTGMNSSVVPLSQGQVIVSIPTGSTVSAGGGSTSAVSPTSISSSAAAGLQRLAAQSQHVGFARSVVKLKCQHCNRLFATKPELLDYKGKMFQFCGKNCSDEYKKINNVMAMCEYCKIEKIVKETVRFSGADKSFCSEGCKLLYKHDLAKRWGNHCKMCSYCLQTSPKLVQNNLGGKVEEFCCEECMSKYTVLFYQMAKCDACKRQGKLSESLKWRGEMKHFCNLLCILMFCNQQSVCDPPSQNNAANISMVQAASAGPPSLRKDSTPVIANVVSLASAPAAQPTVNSNSVLQGAVPTVTAKIIGDASTQTDALKLPPSQPPRLLKNKALLCKPITQTKATSCKPHTQNKECQTEDTPSQPQIIVVPVPVPVFVPIPLHLYTQYAPVPFGIPVPMPVPMLIPSSMDSEDKVTESIEDIKEKLPTHPFEADLLEMAEMIAEDEEKKTLSQGESQTSEHELFLDTKIFEKDQGSTYSGDLESEAVSTPHSWEEELNHYALKSNAVQEADSELKQFSKGETEQDLEADFPSDSFDPLNKGQGIQARSRTRRRHRDGFPQPRRRGRKKSIVAVEPRSLIQGAFQGCSVSGMTLKYMYGVNAWKNWVQWKNAKEEQGDLKCGGVEQASSSPRSDPLGSTQDHALSQESSEPGCRVRSIKLKEDILSCTFAELSLGLCQFIQEVRRPNGEKYDPDSILYLCLGIQQYLFENGRIDNIFTEPYSRFMIELTKLLKIWEPTILPNGYMFSRIEEEHLWECKQLGAYSPIVLLNTLLFFNTKYFQLKNVTEHLKLSFAHVMRRTRTLKYSTKMTYLRFFPPLQKQESEPDKLTVGKRKRNEDDEVPVGVEMAENTDNPLRCPVRLYEFYLSKCSESVKQRNDVFYLQPERSCVPNSPMWYSTFPIDPGTLDTMLTRILMVREVHEELAKAKSEDSDVELSD", "sequence_length": 1548, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a1167496d43acdcb0195c307158b484988d2cfb1a8ebe31ce5f3b7db01fbb9dc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VZL5.json", "taxon_id": "9606", "uniprot_accession": "Q5VZL5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zmym2-like-qrich1-c-terminal-domain-ipr021893.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021893", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zmym2-like-qrich1-c-terminal-domain-ipr021893.yaml" } ], "pfam_ids": [ "PF12012" ], "protein_name": "Uncharacterized protein KIAA1958 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDCLHTSSENLSKLVSWAHSHGTICSLIPNLKHLLSEGSHGNLTAMWGCSAGHAYHWPLTATCRAGSQERVCFQDNRSFNSDSPSIIGVPSETQTSPVERYPGRPVKAKLDCNRTRDSCDFSYCSEPSELDEAVEEYEDENTLFDMVCESSVTDEDSDFEPQTQRPQSIARKRPGIVPSSIHSSSQGQMVDECSNDVIIKKIKQEIPEDYYIVANAELTGGVDGPALSLTQMAKPKPQTHAGPSCVGSAKLIPHVTSAINTELDPHILSASPSVISRPIIPKTARVSLASPNRGPPGAHGTAHQVTMQMPVSTSHPNKQISIPLSALQLPGQDEQVASEEFLPHLPSQVSSCEVALSPSVNTEPEVSSSQQQPPAAPTITTEATAQCIPAYSTKLNKFPVFNINDDLNGLCTSAVSPNTTKATRYALNVWRYWCMTNGLKDHTDITKIPAVKLNELLENFYVTVKKSDGSDFLATSLHAIRRGLDRILKNAGVGFSITSSTFSSSTKKLKEKLWVLSKAGMSGARSRNIVYFSLSDEEEMWQAGCLGDDSPITLLSTVVKYNSQYLNMRTLQEHADLMYGDIELLKDPQNQPYFARTDSVKRESRSGSTRVCHGKIYHEHSRGHKQCPYCLLYKYMYIHRPPTQMEAKSPFYLTARKEATDMGSVWYEEQRMGLRSLRGIVPNLARKVKLENCENFTFVSFTQVSRRLGSHSCCQ", "sequence_length": 716, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9e6c750db2b1bcbddfd95e36cf0a0bb538e9751fdcc4e881a190455d82023543", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C4P0.json", "taxon_id": "10090", "uniprot_accession": "Q8C4P0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zmym2-like-qrich1-c-terminal-domain-ipr021893.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021893", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zmym2-like-qrich1-c-terminal-domain-ipr021893.yaml" } ], "pfam_ids": [ "PF12012" ], "protein_name": "Uncharacterized protein KIAA1958", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDCLHTSSENLSKLVSWAHSHGTICSLIPNLKHLLSEGSHGNLTAMWGCSAGHAYHWPLTATCRAGSQERVCFQDNRSFNSDSPSIIGVPSETQTSPVERYPGRPVKAKLDCNRTRDSCDFSYCSEPSELDETVEEYEDENTLFDMVCESSVTDEDSDFEPQTQRPQSIARKRPGVVPSSLHSSSQTQMVDECSNDVIIKKIKQEIPEDYYIVANAELTGGVDGPALSLTQMAKPKPQTHAGPSCVGSAKLIPHVTSAISTELDPHGMSASPSVISRPIVQKTARVSLASPNRGPPGTHGTNQQVAMQMPVSTSHPNKQISIPLSALQLPGQDEQVASEEFLSHLPSQVSSCEVALSPSVNTEPEVSSSQQQPPVAPAITTEATAQCIPAYSTKLNKFPVFNINDDLNDLCTSAVSPNTTKATRYALNVWRYWCMTNGLKDHTDITKIPAVKLNELLENFYVTVKKSDGSDFLATSLHAIRRGLDRILKNAGVGFSITSSTFSSSTKKLKEKLWVLSKAGMSGARSRNIVYFSLSDEEEMWQAGCLGDDSPITLLSTVVKYNSQYLNMRTLQEHADLMYGDIELLKDPQNQPYFARTDSVKRESRSGSTRVCHGKIYHEHSRGHKQCPYCLLYKYMYIHRPPTQMEAKSPFYLTARKEATDMGSVWYEEQRMGLRSLRGIVPNLAKKVKLENCENFTFVSFTQVSRRLGSHSCCQ", "sequence_length": 716, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "502173bc0c02ba4bab2159d20babdcfb2143013f6ac3cdadee75b12559b91f54", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N8K9.json", "taxon_id": "9606", "uniprot_accession": "Q8N8K9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/qrich1-like-domain-ipr057926.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/qrich1-like-domain-ipr057926.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zinc-finger-mym-type-ipr010507.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010507", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zinc-finger-mym-type-ipr010507.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zmym2-like-qrich1-c-terminal-domain-ipr021893.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021893", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zmym2-like-qrich1-c-terminal-domain-ipr021893.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/qrich1-pf25561.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25561", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/qrich1-pf25561.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zf-fcs-pf06467.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06467", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-fcs-pf06467.yaml" } ], "pfam_ids": [ "PF06467", "PF12012", "PF25561" ], "protein_name": "Zinc finger MYM-type protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTSSVGTLELTDQTPVLLGSTAMATSLTNVGNSFSGPPNPLVSRSSKFQNSSVEDDDDVVFIEPVQPPPSSAPLVADQRPITFTSSKNEELQGNDPKILPSSKELAPQKGSVSETIVIDDEEDMETNQGQEKSSSNFIERRPSETKNRTNDVDFSSSTFSRSKVNAGVSNSGITTEPDSEIQIANVTTLETGVSSVSDGQLESTDGRDMNLMITHVTSLHNTSLGDGSNGLQSSNFGVNIQTYTPSLTSQTKAGVGPFNPGRMNVAGDVFQNGESAPHHNPDSWISQSASFPRNQKQQGVDSLSPVASLPKQIFQPSNQQPTKPVKVTCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKPAPKKLCVMCKKDITTMKGTIVAQVDSSESFQEFCSTSCLSLYEDKQSPAKGALNKSRCTICGKLTEIRHEVSFKNMTHKLCSDHCFNRYRMANGLIMNCCEQCGEYLPSKGAGNNVLVVDGQQKRFCCQSCVTEYKQVGSHPSFLKEVRDHMQDSFLMQPEKYGKLTTCTGCRTQCRFFDMTQCIGPNGYMEPYCSTACMNSHKTKYAKSQSLGIICHFCKRNSLPQYQATMPDGKLYNFCNSSCVAKFQALSMQSSPNGQFVAPSDIQLKCNYCKNSFCSKPEILEWENKVHQFCSKTCSDDYKKLHCIVTYCEYCQEEKTLHETVNFSGVKRPFCSEGCKLLYKQDFARRLGLRCVTCNYCSQLCKKGATKELDGVVRDFCSEDCCKKFQEWYYKAARCDCCKSQGTLKERVQWRGEMKHFCDQHCLLRFYCQQNEPNMTTQKGPENLHYDQGCQTSRTKMTGSAPPPSPTPNKEMKNKAILCKPLTMTKATYCKPHMQTKSCQTDENWKTEYVPVPIPVPVYVPVPMHMYSQNIPVPTTVPVPVPVPVFLPAPLDSSEKIPATVEDLKSKVSSDPLDSELLTMTDMMTEEEGKAEASNINSVIIETDIIGSDLTKNSDPDIQSNMPDVPYEPDLDIEIDFPRAAEELDMENEFLLPPVFGEEYEEQPRPRSKKKGTKRKAVSGYQSHDDSSDNSECSFPFKYTYGVNAWKHWVKTRQLDEDLLVLDELKSSKSVKLKEDLLSHTTAELNYGLAHFVNEIRRPNGENYAPDSIYYLCLGIQEYLCGSNRKDNIFIDPGYQMFEQELNKILRSWQPSILPDGSIFSRVEEDYLWRIKQLGSHSPVALLNTLFYFNTKYFGLKTVEQHLRLSFGTVFRHWKKNPLTMENKACLRYQVSSLCGTDNEDKIATGKRKHEDDEPVFEQVENTANPSRCPVKMFECYLSKSPQNLNQRMDVFYLQPECSSSTDSPVWYTSTSLDRNTLENMLVRVLLVKDIYDKDNYELDEDTD", "sequence_length": 1376, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70a6ffcfa8a2b35709dc3da8568ee77209fc0c459bbe2fae9e87810cc50e79df", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CU65.json", "taxon_id": "10090", "uniprot_accession": "Q9CU65", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/qrich1-like-domain-ipr057926.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/qrich1-like-domain-ipr057926.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zinc-finger-mym-type-ipr010507.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010507", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zinc-finger-mym-type-ipr010507.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zmym2-like-qrich1-c-terminal-domain-ipr021893.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021893", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zmym2-like-qrich1-c-terminal-domain-ipr021893.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/qrich1-pf25561.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25561", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/qrich1-pf25561.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zf-fcs-pf06467.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06467", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-fcs-pf06467.yaml" } ], "pfam_ids": [ "PF06467", "PF12012", "PF25561" ], "protein_name": "Zinc finger MYM-type protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDPSDFPSPFDPLTLPEKPLAGDLPVDMEFGEDLLESQTAPSRGWAPPGPSPSSGALDLLDTPSGLEKDPGGVLDGATELLGLGGLLYKAPSPPEVDHGPEGTLAWDSGEQTLEPGPGCQTPEVMPPDPGAGASPPSPEGLLEPLAPDSPIILESPHIEEEIPPLATRRRGSPGQEEEHTQGQPQSPNAPPSPSVGETLGDGINSSQSKPGVCTPTAHPSLPGDGLTGKEIEKPPERVQKRSERVRRAEPPKPEVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPRRSPRMSLRSSMAQRAGRSSMGTKMSCAHCRTPLQKGQTAYQRKGLPQLFCSSSCLTTYSKKPLGRKTCTFCKKEIWNTKDSVVVQTGPGGSFHEFCTSVCLSLYEAQQQRPIPQSGDPADATRCSICQKTGEVLHEVSNGSVVHRLCSDSCFSKFRANKGLKTNCCDQCGAYIYARPGGLGPELLFHDGQQKRFCNTTCLGAYKKKNTRVYPCVWCKTLCKNFEMLSHVDRNGKTSLFCSLCCTTSYKVKQAGLTGPPRPCSFCRRSLSDPCYYNKVDRTVYQFCSPSCWTKFQHTSPEGGIHLSCHYCHSLFSGKPEVLEWQDQVFQFCCRDCCEDFKRLRGVVSQCEHCRQEKLLHEKLRFSGVEKSFCSEGCVLLYKQDFTKKLGLCCITCTYCSQTCQRGVTEQLDGSTWDFCSEDCKTKYLLWYCKAARCHACKRQGKLLETIHWRGQIRHFCNQQCLLRFYSQQNQPNLDTQSGPESLLNSQSSESKPQTPSQTKVENNHTVRTPDENGNLGKTPVKRATPSVPTPPPPPPPATPRKNKAAMCKPLMQNRGVSCKAEMKSKGSQTEEWKPQVIVLPIPVPIFVPVPMHLYCQKVPVPFSMPIPVPVPMFLPTTLESTEKIVETIEELKVKIPSNPLEADILAMAEMIAEAEELDKASSDLCDLVSNQSAEGLLEDCDLFGTARDDVLAMAVKMANVLDEPGQDLEADFPKNPLDINPSVDFLFDCGLVGPEDVSTEQDLPRAMRKGQKRLMLSESCSRDSLSSQPSCTGLNYSYGVNAWKCWVQSKYANGETSKGDELRFGPKPMRIKEDILACSAAELNYGLAQFVREITRPNGERYEPDSIYYLCLGIQQYLLENNRMVNIFTDLYYLTFVQELNKSLSTWQPTLLPNNTVFSRVEEEHLWECKQLGVYSPFVLLNTLMFFNTKFFGLQTAEEHMQLSFTNVVRQSRKCTTPRGTTKVVSIRYYAPVRQRKGRDTGPGKRKREDETILEQRENRMNPLRCPVKFYEFYLSKCPESLRTRNDVFYLQPERSCIAESPLWYSVIPMDRSMLESMLNRILAVREIYEELGRPGEEDLD", "sequence_length": 1370, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8828cc23f3569f295824e02f6ffe7ef65e6aef61843f9869451886adf2333308", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JLM4.json", "taxon_id": "10090", "uniprot_accession": "Q9JLM4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/qrich1-like-domain-ipr057926.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/qrich1-like-domain-ipr057926.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trash-domain-ipr011017.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011017", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trash-domain-ipr011017.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zinc-finger-mym-type-ipr010507.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010507", "section": "canonical_examples", "url": 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"qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25561", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/qrich1-pf25561.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zf-fcs-pf06467.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06467", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-fcs-pf06467.yaml" } ], "pfam_ids": [ "PF06467", "PF12012", "PF25561" ], "protein_name": "Zinc finger MYM-type protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02151", "PF12014" ], "protein_name": "Protein EXECUTER 1, chloroplastic", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "007cebb4590be932cd7e2ff1a421631348cd00a1be180c181b05f6159e49fdd9", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPSLSTPPSQNLAFSPAASATSSRLTPSSKRSFYPHRLPDPTALCRCSSSSGSNSSSSSSSDDNPRWDSAIQDVLKSAIKRFDSVLSWYATLDNDDGEQGSENVEKIDDDWDWDRWKKHFDQVDDQDRLLSVLKSQLNRAIKREDYEDAARLKVAIAATATNDAVGKVMSTFYRALLEERYKDAVYLRDKAGAGLVGWWSGISEDVKDPFGLIVQITAEHGRYVARSYNPRQLSTSAAGAPLFEIFLTLDGKGNYKKQAVYLKWKEIFPDVPTMPSRTLTPGRFLTSPGRKEDTGNLAVESSEDEESDNSDDDSDLLEESSGFQSFLRDMIPGVKVKVMKVTAPGRVDKDFISKVIEQIADEEDEENDLDIEDIDVEDDTKAEIDEKNADIELESVTDEIIDNNGGREIAVKFVIGDIVDRLSGNQPLKESLRSPANLESVENSSFYLRLEKDLNVKESKGVEGTTLVDGKGSRQSRRRIENIMGDLAKSIEKEKKISVKMLKDVGELLSLTLSQAQNRQQLSGLTKFRRIDVTPSLDPLDGLYIGAHGLYTSEVIHLKRKFGQWKGGKESKKPTDIEFYEYVEAVKLTGDPYVPAGKVAFRAKIGRRYELPHKGLIPEEFGVIARYKGQGRLADPGFRNPRWVDGELVILDGKYVKGGPVVGFVYWAPEYHFVMFFNRLRLQA", "sequence_length": 684, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "007cebb4590be932cd7e2ff1a421631348cd00a1be180c181b05f6159e49fdd9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q93YW0.json", "taxon_id": "3702", "uniprot_accession": "Q93YW0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/singlet-oxygen-mediated-programmed-cell-death-go0010343.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010343", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/singlet-oxygen-mediated-programmed-cell-death-go0010343.yaml" } ], "pfam_ids": [ "PF12014" ], "protein_name": "Protein EXECUTER 2, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATTQPCLIGQIIAVPQFHILFSPRNSLKPELSTNKRTNFSVSIGLRHSFASSISTCNPKAPSLSCLRNCAAVDGADTSSSEDKWDWDWDRWNRHFSEIEEVESVVSLLKSQLEDAVEKEDFEEAVKLKQAISEATVDDAVAEIMRQLQTAVNEERYHDASRLCNETGSGLVGWWVGLPRDSEEPFGRIVHITPGVGRFIGKSYSPRQLVAEAAGTPLFEIFVIKDTDGGYVMQVVYVQHVKQNLTISENSFSKVQQSSKSSINDPSILDVRGSELKVDKKEDTQLNAGEPTEEGIKNVIKFLKDKIPGLKLKVMDVIKIPEEEIVGSDDATEELVGEGTEETNSSDDEEEVEEEENDSIEAISSMDSADYGKHSNTKLVIGGVLHNIEDSSIDDEIVRVSANIMDTERDSFILHVPGRSKRDIDTRKNRVSKEQVTALAAQGLSDLLPPEVAEAFWGEKASLKVSKHVHEIVKLAINQAQKGNHLSEYTAFNRIITPESNLDPFDGLYVGAFGPYGTEIVQLKRKYGRWDDAEGSNSSDIEFFEYVEAVKLTGDPNVPAGQVTFRARIGNGSRMTNHGLFPEELGVLASYRGQGKIADFGFKKPRWVEGKLLKLNGKGMGPYVKGADLGFLYIGPEQSFLVLFNRLRLPE", "sequence_length": 651, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c2b1073692e4dbaf92a9df16ed2d225c39ab454ad3181851c67d9f3f9b3bf45f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q94AT5.json", "taxon_id": "3702", "uniprot_accession": "Q94AT5", "uniprot_release": "2026_03" } ], "pfam_id": "PF12014", "short_name": "Cyclin_D1_bind", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bud3-c-terminal-ph-domain-ipr057454.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057454", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bud3-c-terminal-ph-domain-ipr057454.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bud3-n-terminal-ipr021895.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021895", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bud3-n-terminal-ipr021895.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bud3-n-pf12015.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12015", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bud3-n-pf12015.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ph-bud3-c-pf25351.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25351", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ph-bud3-c-pf25351.yaml" } ], "pfam_ids": [ "PF12015", "PF25351" ], "protein_name": "Bud site selection protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKDLSSLYSEKKDKENDETLFNIKLSKSVVETTPLNGHSLFDDDKSLSDWTDNVFTQSVFYHGSDDLIWGKFFVCVYKSPNSNKLNAIIFDKLGTSCFESVDISSNSQYYPAIENLSPSDQESNVKKCIAVILLQRYPLLSPSDLSQILSNKSENCDYDPPYAGDLASSCQLITAVPPEDLGKRFFTSGLLQNRFVSSTLLDVIYENNESTIELNNRLVFHLGEQLEQLFNPVTEYSPEQTEYGYKAPEDELPTESDDDLVKAICNELLQLQTNFTFNLVEFLQKFLIALRVRVLNEEINGLSTTKLNRLFPPTIDEVTRINCIFLDSLKTAIPYGSLEVLKACSITIPYFYKAYTRHEAATKNFSKDIKLFIRHFSNVIPEREVYTEMKIESIIKGPQEKLLKLKLIIERLWKSKKWRPKNQEMAKKCYNNIIDVIDSFGKLDSPLHSYSTRVFTPSGKILTELAKCWPVELQYKWLKRRVVGVYDVVDLNDENKRNLLVIFSDYVVFINILEAESYYTSDGSNRPLISDILMNSLINEVPLPSKIPKLKVERHCYIDEVLVSILDKSTLRFDRLKGKDSFSMVCKLSSAFISSSSVADLITKARILEKDTAFHLFKASRSHFTLYSTAHELCAYDSEKIKSKFALFLNIPPSKEILEVNNLHLAFFARFCSNDGRDNIVILDVLTKHDDKHIEVTSDNIVFTIINQLAIEIPICFSSLNSSMAKDLLCVNENLIKNLEHQLEEVKHPSTDEHRAVNSKLSGASDFDATHEKKRSYGTITTFRSYTSDLKDSPSGDNSNVTKETKEILPVKPTKKSSKKPREIQKKTKTNASKAEHIEKKKPNKGKGFFGVLKNVFGSKSKSKPSPVQRVPKKISQRHPKSPVKKPMTSEKKSSPKRAVVSSPKIKKKSTSFSTKESQTAKSSLRAVEFKSDDLIGKPPDVGNGAHPQENTRISSVVRDTKYVSYNPSQPVTENTSNEKNVEPKADQSTKQDNISNFADVEVSASSYPEKLDAETDDQIIGKATNSSSVHGNKELPDLAEVTTANRVSTTSAGDQRIDTQSEFLRAADVENLSDDDEHRQNESRVFNDDLFGDFIPKHYRNKQENINSSSNLFPEGKVPQEKGVSNENTNISLKTNEDASTLTQKLSPQASKVLTENSNELKDTNNEGKDAKDIKLGDDYSDKETAKEITKPKNFVEGITERKEIFPTIPRLAPPASKINFQRSPSYIELFQGMRVVLDKHDAHYNWKRLASQVSLSEGLKVNTEEDAAIINKSQDDAKAERMTQISEVIEYEMQQPIPTYLPKAHLDDSGIEKSDDKFFEIEEELKEELKGSKTGNEDVGNNNPSNSIPKIEKPPAFKVIRTSPVRIIGRTFEDTRKYENGSPSDISFTYDTHNNDEPDKRLMELKFPSQDEIPDDRFYTPAEEPTAEFPVEELPNTPRSINVTTSNNKSTDDKLSSGNIDQKPTELLDDLEFSSFNIAFGNTSMSTDNMKISSDLSSNKTVLGNAQKVQESPSGPLIYVLPQSSTKHEKEGFLRKKQKDEPIWVSPSKIDFADLSRRTKALTPERNTVPLKNNDSRKYKYTGEGSIGNMTNMLLTKDASYAYLKDFVALSDDEDEDGKQNCAVGGPEKLKFY", "sequence_length": 1636, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a7915f93855217c561ac7d25e179986de98bbb0028fe3e3e12c74b429173ce38", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P25558.json", "taxon_id": "559292", "uniprot_accession": "P25558", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bud3-n-pf12015.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12015", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bud3-n-pf12015.yaml" } ], "pfam_ids": [ "PF12015", "PF25351" ], "protein_name": "Bud site selection protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVYHRYASGEYDKTYFEKASESRKHDDKVGRIQISPLLGQFSTSDTLYKFKEKSIEEWLAIFPKAAYFKGYDESLFGNVIIMVYENSHTGKLNTTSFSKFGVTSYDNLVLDARSRFWPSCENLLPSYQKSNVRRSLAITNLKNYNKLVNSPGNFYVNKSWDETYAGSLANNMQLISEKKPEKFGLKLLELGLLQTHCIQSTVLDVIYDNASSETSDKIVEENNKLVFLIGSQLEQLFDPLLEYSPEIMEFSYTVPVDAISPQIKNNELINTIISELLTVQTNFTMRLVNLLQNFIIPLRIHVLAATSSSGITKINQVFPPTIDEITRINCILHDSLKKASAFGYVEIMKAVGTIMPYFYKAFIRHEANLKNFRDNLAKFHSKNNKKIFENTMINKGNLGIRDIDSIVAGSLLELPKLKLILVRLKDSIIFEKTKLSNFEDDPSNEFFTIEKYFNSAVDVIDAFGFEEENNQTKIDIRQRVFTPTGKILTELASNWPPELQYGWLARKVVGIYEMRNIKPLNDTFYDLDILIIFSDHILFLTIVDDSYYNERNNESMKNLCVSDILMHSLVNDKPLPNLKSLPTMEVNCWCIINEVITTTYKGVSPITSKTQEFLKFVNISKTGFKNNNAENSTISKNYEILDGSDRGNVDGCKIIELINKSTVLNKRKPFHLFRSNDPKLHIYSIAQELSAYQEESCKSPMALYLNLSIHDPKKYFEENQTVHFVLNASFINDHQIHMVGFNRAETFELNEIISSNDLQVCLKEVIVKNFSLLFNTFSNISKMLTQGYAYDINYCANIFTQIDEIKLNEHRQEIAKNKSTDSISRPKTRNVSEIISIPEVYMNKISPSNTNTRDQRSQQRRTEKRLSTRSKNNSRDVEVKKSSQERPDKRNSMIKKVFRSLRRSFDGIENSTPKTEIHENNNTSKLQDSSSFSGKKNEYTSLYKPVPQLQTKEQKHVHEQVQVQEQGQGQGQGQEQEQGQEQEKEQEQSFSEANIPRDIDNYTGIQMRKECNNSVQQSRNTSGSLDVNSHFEFPPHLDSSFGSNNNTIILVNDNENRHKNRPAPEKISILDSTDDHSSNIPRRSENVGYGKFNVEDFYDDGEANWVSISNENYSLLNAEIRALKEEAHMDTEDIIELNDSDNITEDEMRDVYESKDFDAFYTPQNQSVAQFGDNPTSLKNENREMSTQSLASSEIIEVFGKQIDSNFRSDYIPNLNENLHSINSNKKFGFQNDHRFSVLTSSDDEFFSSDDFASSLPIERQENKKSHSPMIMNSSSSDATIINENFEEKLLPATPIDCDDKVLPSSQIHKNMQSSSIRSDSFSTTYESMTYLSEILNGHLNFSD", "sequence_length": 1345, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6952478a9f60778a4ee7e8d060e44da4252743a06b11f113549ed8064bb0ae28", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6BIF0.json", "taxon_id": "284592", "uniprot_accession": "Q6BIF0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bud3-n-pf12015.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12015", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bud3-n-pf12015.yaml" } ], "pfam_ids": [ "PF12015", "PF25351" ], "protein_name": "Bud site selection protein 3 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLTAKQDEVGRELRVATGTSLIEYPVKDWLLRRQPTEWEALLGEAAIFSGQDELLWGPFVACVYREPRTTRLNCLFMDRIGVMHLHSVDVSDTSRFYPAVENLRPEYRTQVVRRCLAVGLLKKYVLLDPSAVRLIRAELPYDYDQTTAGDLANTCELVEGQAARDVGQLLVRLGLVQPRHVRSLMLDVVYENHADVVDANNKLVYYLGEQLEQLFDPLTEYSPEPTELSYRVPDQVRTSLSDEMPLMVSICEELLQLQTNFTLSLVGFLQKFLIPLRIKALNEQVPGLSTVKLNNIFPPTIDEVTRINCIFLDALKAALPYGSLEVLKACSITAPYFYKAYTRHEAATKFFSRDIKSFLSTFGKSLSDLNFYSEIKLDTLIHGPQEKLTKLKLIIDRLFDSKDWETNEEQKEADRCYRSICDVIDSFGKDEPPNTYDTRVFTPSGKILTELAKGWPAELQYKWLKRRVVGVFDVISVTDPESRDIVVIFSDYIVFLHVINGNLYYSGDSKKPLISDVLMNSLINEVPLPPKIPKLEVLSHSYIDDVVVSTYGKNSLRFDTLNAERPSSVAYTLASSSVEASYVADLCTKARILEKDTAFHLFKTAIDSFHVYSTAHESEAYKTERIKSPFVLFLNIPDSIGALQDHNATVGLFASLNKNDKVTLVRLGLDGSREESFASLDNFLSLIIEELLIFYPSYLSSATSPLFQQLMQINEQLVQTLLDPKGVHSASKSKCALRTSKKKKMPANLVSTNDNSRTLSPGTIISRTPRTISTITPKQEKRKSVGQASNSPARGSISTTPRKHKRESILGKISGLFHKKDKKENKRNSVGSDTRNRHDNGSVHILRNSSSSFRELESPRQMKRFSSVVHTAVPSSSKRRTSGISPSKGTVNLRALQDAENDDNADISKIPIPEGESLFDDTIRVDGVDADFYAQKDRLSKIYNHDLYGEVVPSAPGSKNVNVVSGATREQEKQQNTQKAIARELLASVDQQKRQPTHSAPAESQIVIPGLPQSNVPQINFGRSPSFIELFGGMRLVLDENDESVNWRRLCSERSLNEKYQIRPATYAGCISGELAPPVGIISDQRDSNLSGDNDADTPLPMHSSNKSILSDETLEKGEFERDFAISTPKSQTVSDVNARRETWGYSHSHDEEIDSEKRANTKPVSAPAPNVIPGLIITANSPTKPWHKENTRIKVSDVRSEGTDVSYISSLKKSSNRLVELSVNSQEDFEDERHTPVIEPIQNPEAPSLIENTETAPVASNSSNEETLSKLLGSQGVIDLTEETIDYSSINRKHASIQTAYPVLDDVEFSTFHMSFGDMKAEDSHLANQRESYLFSNSTIAGKKDESHGPVFYKLPDFVADDSYLGYSAVDQHAKHERNTEIGEEDEAMWVSPSKLDIFDLSKQPESVYKRTSIPAKHAELLSKMRKDGSVKFEESMFIRDNSYVYLGQFLSADEVIEQQDKKLAANTDEMDSARRL", "sequence_length": 1478, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ef7884062c6718cd2ef8ae18487dbfa123e6b0bd5b9ed78252f223461758b0c9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HF61.json", "taxon_id": "284811", "uniprot_accession": "Q9HF61", "uniprot_release": "2026_03" } ], "pfam_id": "PF12015", "short_name": "Bud3_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Tetrahymena thermophila (strain SB210)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fap206-pf12018.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12018", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fap206-pf12018.yaml" } ], "pfam_ids": [ "PF12018" ], "protein_name": "Cilia- and flagella-associated protein 206", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNQLEEIVKYVIYKCRENNHPVTETLAAFVTQTIYNPKTDRFYLEDKLTASQVDELKATVLQKLSQIDKPNMKTIQMQISYDSAYIESEIQRQERIKNQSIETGKLTDEVVSLEIKNAKDFEGLTVLFKKIFNFLLYKNKELMYDGTNKTGNQDSENQATQFNIEKEVAAGLESVIPRAALGPFVSLNPSEKVTQLVELSNLVIGIRLFNKWIQKGGIGLVPFQDLLEYEGRDLIERIRQEAFEVIENCDNYTIFFQNVGPGKIKISDEQFKQYKDELTFLRQYLSYILSIQEDVDISENSVDSNQTRYLKEIKDLETLLKQKSSAPKEQVYPKFATLAQAYIQLLEEKKLCLTRVKLFELLQEMRKGFKLTLPRNLILTAKNISQDPSNEEQVEIEYSEDCGIERLLPKNTPDFMQTPLDYLGFCLWSIVKRDGLLLPGKPALGVFRYKDKNCVFSDEKSINEFLSDPQQFIQGVINQCRKNPELIHLLRMDDSFKNVNLNIYVSGQEGGHQLSNKLMVDKGIETPLHFVEKRLDPNYCWNEWELRKKALQMANIRKRQTKACQTILSNFKVDSEAQTYLPKDNETNTGKTEWDIRKFAIEQAKKKGIIAGTDRAPYPIHPRNYITGLRDKDTN", "sequence_length": 635, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1ef33d4f9a6600e82efa67db88b1b12d85e36ee58a14b84cfd0379e66b28042b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q23H79.json", "taxon_id": "312017", "uniprot_accession": "Q23H79", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/radial-spoke-go0001534.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0001534", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/radial-spoke-go0001534.yaml" }, { "cited_uniprot_accession": "", "commit": 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"pfam_ids": [ "PF06148", "PF12022" ], "protein_name": "Conserved oligomeric Golgi complex subunit 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "340a9338edb0878c24c4d49bc8d85c932d6e42bdf9f00ba7cb73f671753d88a6", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEKSRMNLPKGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAMVELINKDYADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQEDIRKKKMCVLRLIQVIRSVEKIEKILNSQSSKETSALEASSPLLTGQILERIATEFNQLQFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKTRDAEALVGQVLVKPYIDEVIIEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAISSEKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGSQASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAESPYCLLASHRTWSSLRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNELSLRPISNESPKEIKKPLVTGSKEPSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQLPELLEIIKPKLEMIGFKNFSSISAALEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTNKEVPTTASSYVDSALKPLFQLQSGHKDKLKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKMEESLKRLKQARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQASDIKSFSALAELVAAAKDQATAEQP", "sequence_length": 738, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "340a9338edb0878c24c4d49bc8d85c932d6e42bdf9f00ba7cb73f671753d88a6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q14746.json", "taxon_id": "9606", "uniprot_accession": "Q14746", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cog-complex-component-cog2-c-terminal-ipr024603.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024603", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cog-complex-component-cog2-c-terminal-ipr024603.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/conserved-oligomeric-golgi-complex-subunit-2-n-terminal-ipr024602.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024602", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/conserved-oligomeric-golgi-complex-subunit-2-n-terminal-ipr024602.yaml" } ], "pfam_ids": [ "PF06148", "PF12022" ], "protein_name": "Conserved oligomeric Golgi complex subunit 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTLHGEKTMFASPNTFYIDESKLCFNKTHFNREDFNVERFMNLARQKSDLKTIQQDLRLYLKSVQNSMIELINDDYADFVHLSSNLVSLQDSLNKIEQDINRIWDEFKESTRESVGMAERIEQKCDELCSNREKQIEIRDRIYFLVAIEKLSEMLLHPPRKCSALWLQKAASFASELKGSTFPHSEEENAAEKIILSQLEAVLCAEGVRSAAGDCQNLPLIYSILSLTESTHSLTALLVSDLLYAEFVNEKHDESNQLKLLKQVFESVKKMRETWAEKMGTEHFRGNIRRFLDETLLTFILTFIDKCMGAVAVPSDTRLFHECFLLTQEFIDNWPSSHTCRAMLKSIRDKFNLLVYFKLETHRFGKQCDQLMSPEMFAEPETSENRENTPQLHCGVSRAIITAIEHVWSDDVYLPPIVDKLWDFTLKLLLKHFSWSQTMKNYFMEEKRDWTSMVTLRSDTGNLHQLVFDFALESIWGKFHDITVDTAPFGQCLTKHGRSIDSLCVQIDDSIIEMFSEVLHQEIAQVSDVPKQYRWTKKSPPTTHSKYVVTAIEMVENLKEKLCCEEHPHTDEIVRKVNLSAFNYFVGKGNEVLDSVEATGSSLSRFKRKTTTDSGSTVTDDDKIKQQIYHDAKYFLSYAENLVFSQADLTGLQEVVNRFDKDARSAIVQEKNQNEEAGNA", "sequence_length": 681, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e0ada702b72cf04ca2bc8c0d6b184a4ae2f83f466bbeb365b2dde33466fe68d5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q21444.json", "taxon_id": "6239", "uniprot_accession": "Q21444", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cog-complex-component-cog2-c-terminal-ipr024603.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024603", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cog-complex-component-cog2-c-terminal-ipr024603.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/conserved-oligomeric-golgi-complex-subunit-2-n-terminal-ipr024602.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024602", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/conserved-oligomeric-golgi-complex-subunit-2-n-terminal-ipr024602.yaml" } ], "pfam_ids": [ "PF06148", "PF12022" ], "protein_name": "Conserved oligomeric Golgi complex subunit 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKRRMNLPTGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAMVELINKDYADFVNLSTNLVGMDRALNQLSVPLGQLREEVLSLRSSVSEGILAVDERMSKQEDIRKKKMSVLRLIQVIRSVEKIEKILNSQSSKDVSSQEASSPLLTGQVLERIATEFNQLQFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIVRHCLRTYATIDKTQDAEALVGQVLVKPYVNEVIVEQFVESHPSSLQLMYNKLLEFVPHHCRLLREVTGGAVSSEKGTIVPGYDFLVNSVWPEIVRGLEEKLPSLFNPGDPDAFHQKYTVSMDFVQRFERQCGSQASVKRLRAHPAYHNFSNKWNLPVYFQIRFREVAGSLEAALTDGLEDAPAGSPYCLLASHRTWISLGKCWSDEMFLPLLAHRLWRLTLQILARFSVFVSELSVRPVSNESAKETKKPLTGSKDPSEDQGSHASEASAASISSTQLVYVVSDLGRLQEWLPDLLETVKQKLEMIGFKNFSSISAALEDSQSALSAHVPALSSRIVQDLSESCFSYLKSALEVPRLYRRTNKEVPSTASSYVDSALKPLYQLQSGHGDKVQPAVMQSWLQEALSDSTHRYFETVSDVLNSVKKMEESLKRLKQARRSPATNPVSSSGGGMSDDDKIRLQLALDVEHLGEQIQRMGLQTSDIKSFPALMELVLAARDQAAAEQP", "sequence_length": 731, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "732d87e7816801206defb4e79bbdc7d261c1823d26dab9d7d292d9bcd0262df3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q921L5.json", "taxon_id": "10090", "uniprot_accession": "Q921L5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cog-complex-component-cog2-c-terminal-ipr024603.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024603", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cog-complex-component-cog2-c-terminal-ipr024603.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/conserved-oligomeric-golgi-complex-subunit-2-n-terminal-ipr024602.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024602", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/conserved-oligomeric-golgi-complex-subunit-2-n-terminal-ipr024602.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/cog2-c-pf12022.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12022", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/cog2-c-pf12022.yaml" } ], "pfam_ids": [ "PF06148", "PF12022" ], "protein_name": "Conserved oligomeric Golgi complex subunit 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHDPVKKSAHLTAGSTSTAEKLCFDKNEFMKANFSVDEFLHKNRNAPSLEQLRDNLGLYLKGLRAAMIDLINEDYADFVNLSANLVGLDQNIKTIQQPLEQFRSDIESIHGLIDENVTELRAQLEEKRQLREFKRGLQSLKKVYETINKLQDLIDRKLSGEQPIKAVDLERAALDLIQLKFHEKHCFKHLSPDHQGKIQQLEEQLHQHLRRFFNDALSQARNSAPESLERCLRIYITLNACDQAECAFREDVVAPYMTGVIGEQQLQNSPQGLAGIYSKILNFISLHMTDLLRLTLYSDKFPGFNFVVNSYWSDVETRLELHMNSIFAPGNSEVFYVKYKCTRDFLGKIEELLTCSGEQAVTFYRQHKQTKSFEARWNLPVYFQICFQEIAGKFEAQLEPVLQEDSLKDNLTDSDYKISAFNAAKEAMTRCWAEGVYLPEVFPKFYKLNVQVVLRLSRWITDAITQSKGSNFSKPYTRNQLLIALHADIRKLDAHLPELQQLIIKSVPVEQCTKIFSDVLAKSMSCLADTLGAHLTNIQKTLVELLIGECETENVRQVNDLPRLYRKTNREVPTRCSSYVEQMLRPLKAFAQQNESQLGTLVVEQILAEVASHITKAYFNVVSDVLTSVQKTEESLRRLRNVKSGGAATVSTGSSAVMSDDDKIRVQLRVDVTSWRQELCKLNFQATQIDKLVELTNMVEDSIKLKDNSA", "sequence_length": 710, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1f27c324d11c250eea54a985654dc42827ad85ce9999e2e67ef734f570baefb4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VF78.json", "taxon_id": "7227", "uniprot_accession": "Q9VF78", "uniprot_release": "2026_03" } ], "pfam_id": "PF12022", "short_name": "COG2_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12023", "short_name": "DUF3511", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/histone-h3k14ac-reader-activity-go0140015.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140015", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/histone-h3k14ac-reader-activity-go0140015.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/bromodomain-brd7-like-subgroup-the-brd7-gene-encodes-a-nuclear-protein-cd05513.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05513", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/bromodomain-brd7-like-subgroup-the-brd7-gene-encodes-a-nuclear-protein-cd05513.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bromodomain-ipr001487.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR001487", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bromodomain-ipr001487.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3512-pf12024.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12024", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3512-pf12024.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/bromodomain-like-superfamily-ipr036427.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/bromodomain-like-superfamily-ipr036427.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/bromodomain-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50014", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/bromodomain-2.yaml" } ], "pfam_ids": [ "PF00439", "PF12024" ], "protein_name": "Bromodomain-containing protein 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKKHKKHKSDRHFYEEYVEKPLKLVLKVGGSEVTELSTGSSGHDSSLFEDRSDHDKHKDRKRKKRKKGEKQAPGEEKGRKRRRVKEDKKKRDRDRAENEVDRDLQCHVPIRLDLPPEKPLTSSLAKQEEVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSIDFMSDLQKTRKQKERTDACQSGEDSGCWQREREDSGDAETQAFRSPAKDNKRKDKDVLEDKWRSSNSEREHEQIERVVQESGGKLTRRLANSQCEFERRKPDGTTTLGLLHPVDPIVGEPGYCPVRLGMTTGRLQSGVNTLQGFKEDKRNRVTPVLYLNYGPYSSYAPHYDSTFANISKDDSDLIYSTYGEDSDLPNNFSISEFLATCQDYPYVMADSLLDVLTKGGHSRSLQDLDMSSPEDEGQTRALDTAKEAEITQIEPTGRLESSSQDRLTALQAVTTFGAPAEVFDSEEAEVFQRKLDETTRLLRELQEAQNERLSTRPPPNMICLLGPSYREMYLAEQVTNNLKELTQQVTPGDVVSIHGVRKAMGISVPSPIVGNSFVDLTGECEEPKETSTAECGPDAS", "sequence_length": 651, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1f007b6e66a855ccfc17ffb6506c71020895ba76b81c80988126b2a0df00a835", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O88665.json", "taxon_id": "10090", "uniprot_accession": "O88665", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/bromodomain-brd7-like-subgroup-the-brd7-gene-encodes-a-nuclear-protein-cd05513.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05513", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/bromodomain-brd7-like-subgroup-the-brd7-gene-encodes-a-nuclear-protein-cd05513.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bromodomain-ipr001487.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR001487", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bromodomain-ipr001487.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/bromodomain-like-superfamily-ipr036427.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/bromodomain-like-superfamily-ipr036427.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/bromodomain-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50014", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/bromodomain-2.yaml" } ], "pfam_ids": [ "PF00439", "PF12024" ], "protein_name": "Bromodomain-containing protein 9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKKHKKHKAEWRSSYEDYTDTPLEKPLKLVLKVGGSEVTELSGSGHDSSYYDDRSDHERERHREKKKKKKKKSEKEKHLDEEERRKRKEEKKRKREKEHCDSEGEADAFDPGKKVEVEPPPDRPVRACRTQPAENESTPIQRLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMSKAALLGSEDPAAEEPVPEVVPVQVETTKKSKKPSREVISCMFEPEGNACSLTDSTAEEHVLALVEHAADEARDRINRFLPGGKMGYLKKLGDGSLLYSVVNAPEPDADEEETHPVDLSSLSSKLLPGFTTLGFKDERRNKVTFLSSASTALSMQNNSVFGDLKSDEMELLYSAYGDETGVQCALSLQEFVKDAGSYSKKMVDDLLDQITGGDHSRMIFQLKQRRSIPMRPADEMKVGDPLGESGGPVLDFMSMKQYPDVSLDVSMLSSLGKVKKELDHEDSHLNLDETARLLQDLHEAQAERGGSRPSSNLSSLSTASEREHPPPGSPSRLSVGEQPDVAHDPYEFLQSPEPAAPAKN", "sequence_length": 596, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b3b00c7450b612e7bf85c343866737bce7fdfac72554fb633d0cad2c30a96a9c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UQU0.json", "taxon_id": "10090", "uniprot_accession": "Q3UQU0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", 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"data/traits/sequence/family/pfam/duf3512-pf12024.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12024", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3512-pf12024.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/bromodomain-like-superfamily-ipr036427.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/bromodomain-like-superfamily-ipr036427.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/bromodomain-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50014", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/bromodomain-2.yaml" } ], "pfam_ids": [ "PF00439", "PF12024" ], "protein_name": "Bromodomain-containing protein 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKKHKKHKSDKHLYEEYVEKPLKLVLKVGGNEVTELSTGSSGHDSSLFEDKNDHDKHKDRKRKKRKKGEKQIPGEEKGRKRRRVKEDKKKRDRDRVENEAEKDLQCHAPVRLDLPPEKPLTSSLAKQEEVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSIDFMADLQKTRKQKDGTDTSQSGEDGGCWQREREDSGDAEAHAFKSPSKENKKKDKDMLEDKFKSNNLEREQEQLDRIVKESGGKLTRRLVNSQCEFERRKPDGTTTLGLLHPVDPIVGEPGYCPVRLGMTTGRLQSGVNTLQGFKEDKRNKVTPVLYLNYGPYSSYAPHYDSTFANISKDDSDLIYSTYGEDSDLPSDFSIHEFLATCQDYPYVMADSLLDVLTKGGHSRTLQEMEMSLPEDEGHTRTLDTAKEMEITEVEPPGRLDSSTQDRLIALKAVTNFGVPVEVFDSEEAEIFQKKLDETTRLLRELQEAQNERLSTRPPPNMICLLGPSYREMHLAEQVTNNLKELAQQVTPGDIVSTYGVRKAMGISIPSPVMENNFVDLTEDTEEPKKTDVAECGPGGS", "sequence_length": 651, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6a556c110d10f800fca5b14156977e873577c763645d57a15aea10d7b6ba0fc6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NPI1.json", "taxon_id": "9606", "uniprot_accession": "Q9NPI1", "uniprot_release": "2026_03" } ], "pfam_id": "PF12024", "short_name": "DUF3512", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/c-terminal-fat-like-four-helix-bundle-domain-also-called-duf3513-of-ca-cd11571.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd11571", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/c-terminal-fat-like-four-helix-bundle-domain-also-called-duf3513-of-ca-cd11571.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"data/traits/sequence/domain/pfam/cas-c-pf12026.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12026", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cas-c-pf12026.yaml" } ], "pfam_ids": [ "PF12026", "PF14604" ], "protein_name": "Embryonal Fyn-associated substrate", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00018", "PF08824", "PF12026" ], "protein_name": "Breast cancer anti-estrogen resistance protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a78211866188de5bc3c94211acbe02e69de1004993d7398889d1e26ff8ce54ad", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNHLNVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYDKKPAGPGPGPPATPAQPQPGLHAPAPPASQYTPMLPNTYQPQPDSVYLVPTPSKAQQGLYQVPGPSPQFQSPPAKQTSTFSKQTPHHPFPSPATDLYQVPPGPGGPAQDIYQVPPSAGMGHDIYQVPPSMDTRSWEGTKPPAKVVVPTRVGQGYVYEAAQPEQDEYDIPRHLLAPGPQDIYDVPPVRGLLPSQYGQEVYDTPPMAVKGPNGRDPLLEVYDVPPSVEKGLPPSNHHAVYDVPPSVSKDVPDGPLLREETYDVPPAFAKAKPFDPARTPLVLAAPPPDSPPAEDVYDVPPPAPDLYDVPPGLRRPGPGTLYDVPRERVLPPEVADGGVVDSGVYAVPPPAEREAPAEGKRLSASSTGSTRSSQSASSLEVAGPGREPLELEVAVEALARLQQGVSATVAHLLDLAGSAGATGSWRSPSEPQEPLVQDLQAAVAAVQSAVHELLEFARSAVGNAAHTSDRALHAKLSRQLQKMEDVHQTLVAHGQALDAGRGGSGATLEDLDRLVACSRAVPEDAKQLASFLHGNASLLFRRTKATAPGPEGGGTLHPNPTDKTSSIQSRPLPSPPKFTSQDSPDGQYENSEGGWMEDYDYVHLQGKEEFEKTQKELLEKGSITRQGKSQLELQQLKQFERLEQEVSRPIDHDLANWTPAQPLAPGRTGGLGPSDRQLLLFYLEQCEANLTTLTNAVDAFFTAVATNQPPKIFVAHSKFVILSAHKLVFIGDTLSRQAKAADVRSQVTHYSNLLCDLLRGIVATTKAAALQYPSPSAAQDMVERVKELGHSTQQFRRVLGQLAAA", "sequence_length": 870, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a78211866188de5bc3c94211acbe02e69de1004993d7398889d1e26ff8ce54ad", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P56945.json", "taxon_id": "9606", "uniprot_accession": "P56945", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/src-homology-3-domain-of-cas-crk-associated-substrate-scaffolding-prot-cd12003.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd12003", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/src-homology-3-domain-of-cas-crk-associated-substrate-scaffolding-prot-cd12003.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cas-family-c-terminal-ipr021901.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021901", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cas-family-c-terminal-ipr021901.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/embryonal-fyn-associated-substrate-sh3-domain-ipr035747.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/embryonal-fyn-associated-substrate-sh3-domain-ipr035747.yaml" } ], "pfam_ids": [ "PF12026", "PF14604" ], "protein_name": "Embryonal Fyn-associated substrate", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIATSAQLARALYDNTAESPQELSFRRGDVLRVLQREGAGGLDGWCLCSLHGQQGIVPANRVKLLPAGPAPKPSLCPASPTQPGSSCPTPERGCEEQEVYVIPPPARPCSASGLPARSCSPSSDSIYKVPRGNGMQLTASRDVAEVYDVPPNILRAPSSCPYDSPASFSCPVAPVVPQPPREDEAPYDVPLALKPPAELERDPEWEGGREPGPPLYAAPSNLKRASALLNLYEAPEELLANGESRDADEGIYDVPLLGPEPPSPEPPVASSSTDLDTVAQLPTRSSPPQHRPRLPSTESLSRRPLPALPVSEAPAPSPAPSPAPGRKGSIQDRPLPPPPPCLPGYGGLKPEGDPECREVANDPAGPHNEYEGIPMAEEYDYVHLKGVDTAQGSRPLDKAFPVDPELLERGLAERKEALSPEEPLVLSTGDLQLLHFYAGQCQSHYSALQAAVAALVASTQANQPPCLFVPHGKRVVVAAHRLVFVGDTLGRLAASAALRAQVGAAGTMLAQTLRATVLAVKGAALGYPSDTAVQEMARCVAELAGQALRFTTLLDGLLP", "sequence_length": 560, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4884711ea53a610fa001697d1f1112c6f8025a3493def37360b8659377d7ef92", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q64355.json", "taxon_id": "10090", "uniprot_accession": "Q64355", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cas-c-pf12026.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12026", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cas-c-pf12026.yaml" } ], "pfam_ids": [ "PF08824", "PF12026", "PF14604" ], "protein_name": "Cas scaffolding protein family member 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKGTGIMDCAPKALLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILTEVAADRPCPPFLRGLEEAPASSEETYQVPTLPRPPTPGPVYEQMRSWAEGPQPPTAQVYEFPDPPTSARIICEKTLSFPKQAILTLPRPVRASLPTLPSQVYDVPTQHRGPVVLKEPEKQQLYDIPASPKKAGLHPPDSQASGQGVPLISVTTLRRGGYSTLPNPQKSEWIYDTPVSPGKASVRNTPLTSFAEESRPHALPSSSSTFYNPPSGRSRSLTPQLNNNVPMQKKLSLPEIPSYGFLVPRGTFPLDEDVSYKVPSSFLIPRVEQQNTKPNIYDIPKATSSVSQAGKELEKAKEVSENSAGHNSSWFSRRTTSPSPEPDRLSGSSSDSRASIVSSCSTTSTDDSSSSSSEESAKELSLDLDVAKETVMALQHKVVSSVAGLMLFVSRKWRFRDYLEANIDAIHRSTDHIEESVREFLDFARGVHGTACNLTDSNLQNRIRDQMQTISNSYRILLETKESLDNRNWPLEVLVTDSVQNSPDDLERFVMVARMLPEDIKRFASIVIANGRLLFKRNCEKEETVQLTPNAEFKCEKYIQPPQRETESHQKSTPSTKQREDEHSSELLKKNRANICGQNPGPLIPQPSSQQTPERKPRLSEHCRLYFGALFKAISAFHGSLSSSQPAEIITQSKLVIMVGQKLVDTLCMETQERDVRNEILRGSSHLCSLLKDVALATKNAVLTYPSPAALGHLQAEAEKLEQHTRQFRGTLG", "sequence_length": 786, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e11014dde54380cc42690d6cc3c5f44185b8d63d7e2b743e8e37d29916ca36a4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NQ75.json", "taxon_id": "9606", "uniprot_accession": "Q9NQ75", "uniprot_release": "2026_03" } ], "pfam_id": "PF12026", "short_name": "CAS_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12027", "short_name": "DUF3514", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12028", "short_name": "DUF3515", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12029", "short_name": "DUF3516", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/usp-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00972", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/usp-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/usp-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00973", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/usp-2.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-ubp24-usp9x-y-pf25010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-ubp24-usp9x-y-pf25010.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf3517-pf12030.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf3517-pf12030.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O00507", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00443", "PF12030", "PF22900", "PF25010" ], "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9Y", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "35fae88758a519b044c046c635e9923511f147ae1fbbeec9244b45573251a9dd", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTAITHGSPVGGNDSQGQVLDGQSQHLFQQNQTSSPDSSNENSVATPPPEEQGQGDAPPQHEDEEPAFPHTELANLDDMINRPRWVVPVLPKGELEVLLEAAIDLSVKGLDVKSEACQRFFRDGLTISFTKILMDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLELLAMALNPHCKFHIYNGTRPCELISSNAQLPEDELFARSSDPRSPKGWLVDLINKFGTLNGFQILHDRFFNGSALNIQIIAALIKPFGQCYEFLSQHTLKKYFIPVIEIVPHLLENLTDEELKKEAKNEAKNDALSMIIKSLKNLASRISGQDETIKNLEIFRLKMILRLLQISSFNGKMNALNEINKVISSVSYYTHRHSNPEEEEWLTAERMAEWIQQNNILSIVLQDSLHQPQYVEKLEKILRFVIKEKALTLQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPGQLDHLFDCFKASWTNASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAQSDDVPVDIMDLALSAHIKILDYSCSQDRDAQKIQWIDHFIEELRTNDKWVIPALKQIREICSLFGEASQNLSQTQRSPHIFYRHDLINQLQQNHALVTLVAENLATYMNSIRLYAGDHEDYDPQTVRLGSRYSHVQEVQERLNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVYLCDREACFKWYSKLMGDEPDLDPDINKDFFESNVLQLDPSLLTENGMKCFERFFKAVNCRERKLIAKRRSYMMDDLELIGLDYLWRVVIQSSDEIANRAIDLLKEIYTNLGPRLKANQVVIHEDFIQSCFDRLKASYDTLCVFDGDKNSINCARQEAIRMVRVLTVIKEYINECDSDYHKERMILPMSRAFRGKHLSLIVRFPNQGRQVDELDIWSHTNDTIGSVRRCIVNRIKANVAHKKIELFVGGELIDSEDDRKLIGQLNLKDKSLITAKLTQINFNMPSSPDSSSDSSTASPGNHRNHYNDGPNLEVESCLPGVIMSVHPRYISFLWQVADLGSNLNMPPLRDGARVLMKLMPPDRTAVEKLRAVCLDHAKLGEGKLSPPLDSLFFGPSASQVLYLTEVVYALLMPAGVPLTDGSSDFQVHFLKSGGLPLVLSMLIRNNFLPNTDMETRRGAYLNALKIAKLLLTAIGYGHVRAVAEACQPVVDGTDPITQINQVTHDQAVVLQSALQSIPNPSSECVLRNESILLAQEISNEASRYMPDICVIRAIQKIIWASACGALGLVFSPNEEITKIYQMTTNGSNKLEVEDEQVCCEALEVMTLCFALLPTALDALSKEKAWQTFIIDLLLHCPSKTVRQLAQEQFFLMCTRCCMGHRPLLFFITLLFTILGSTAREKGKYSGDYFTLLRHLLNYAYNGNINIPNAEVLLVSEIDWLKRIRDNVKNTGETGVEEPILEGHLGVTKELLAFQTSEKKYHFGCEKGGANLIKELIDDFIFPASKVYLQYLRSGELPAEQAIPVCSSPVTINAGFELLVALAIGCVRNLKQIVDCLTEMYYMGTAITTCEALTEWEYLPPVGPRPPKGFVGLKNAGATCYMNSVIQQLYMIPSIRNSILAIEGTGSDLHDDMFGDEKQDSESNVDPRDDVFGYPHQFEDKPALSKTEDRKEYNIGVLRHLQVIFGHLAASQLQYYVPRGFWKQFRLWGEPVNLREQHDALEFFNSLVDSLDEALKALGHPAILSKVLGGSFADQKICQGCPHRYECEESFTTLNVDIRNHQNLLDSLEQYIKGDLLEGANAYHCEKCDKKVDTVKRLLIKKLPRVLAIQLKRFDYDWERECAIKFNDYFEFPRELDMGPYTVAGVANLERDNVNSENELIEQKEQSDNETAGGTKYRLVGVLVHSGQASGGHYYSYIIQRNGKDDQTDHWYKFDDGDVTECKMDDDEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYEQMDMIDEDDEMIRYISELTIARPHQIIMSPAIERSVRKQNVKFMHNRLQYSLEYFQFVKKLLTCNGVYLNPAPGQDYLLPEAEEITMISIQLAARFLFTTGFHTKKIVRGPASDWYDALCVLLRHSKNVRFWFTHNVLFNVSNRFSEYLLECPSAEVRGAFAKLIVFIAHFSLQDGSCPSPFASPGPSSQACDNLSLSDHLLRATLNLLRREVSEHGHHLQQYFNLFVMYANLGVAEKTQLLKLNVPATFMLVSLDEGPGPPIKYQYAELGKLYSVVSQLIRCCNVSSTMQSSINGNPPLPNPFGDLNLSQPIMPIQQNVLDILFVRTSYVKKIIEDCSNSEDTIKLLRFCSWENPQFSSTVLSELLWQVAYSYTYELRPYLDLLFQILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAYQCIKCMVALFSSCPVAYQILQGNGDLKRKWTWAVEWLGDELERRPYTGNPQYSYNNWSPPVQSNETANGYFLERSHSARMTLAKACELCPEEEPDDQDAPDEHEPSPSEDAPLYPHSPASQYQQNNHVHGQPYTGPAAHHLNNPQKTGQRTQENYEGNEEVSSPQMKDQ", "sequence_length": 2555, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "35fae88758a519b044c046c635e9923511f147ae1fbbeec9244b45573251a9dd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O00507.json", "taxon_id": "9606", "uniprot_accession": "O00507", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P55824", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00443", "PF12030", "PF22900", "PF25010" ], "protein_name": "Ubiquitinyl hydrolase FAF", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d703d22432651be5cb154f2a2482365ea4a0db83651675e667a268d0f2c05c48", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTFDTRRHTTGQPGSTAPSSSSSTTSTTTTTTSPAQSAGSGSGIGTGTGTVANSSLPGGGSGSLDGNQDQQPATDSQSSDDVAASLSANSVDSTITIVPPEKLISSFPTTKLRSLTQKISNPRWVVPVLPEQELEVLLNAAIELTQAGVDHDCEPCVEFYRNGLSTSFAKILTDEAVNSWKNNIHHCILVSCGKLLHLIAIHMQRDNPYLLDLLAIVFDPENKFNTFNAGRQPECFAAPDYIWGQLDSNKMYARPPPEPKNARGWLVDLINRFGQLGGFDNLLERFNIGLELLKRNQNKCTGKNISVEGRVENGAQDNRLTLALIHSLLRPFGQCYELLMPATIAKYFMPTWNVVLDLLDSFTDEELKREVKPEGRNDYINGIVKSARLLASRLTGQEELIRDLEMFRLKMILRLLQVSSFNGKMNALNEINKVLSSVAYFSHRSQPLPHCMPEDEMDWLTADRMAQWIKSSDVLGVVLKDSLHQPQYVEKLEKIIRFLIKEQALTLDDLDAVWRAQAGKHEAIVKNVHDLLAKLAWDFTPEQLDHLFEAFQASMTTANKRQRERLLELIRRLAEDDKNGVMAQKVLKLFWTLAHSQEVPPEVLDQALGAHVKILDYSCSQERDAQKTIWLDKCVDELKSGDGWVLPALRLIRDICCLYDTTTNHAQRTQTSTNRQQVIERLQNDYSLVILVTNSLTAYMEKVRQMVTDSPGLDATRILIDGRFPHHVQIAERLEFLKFLLKDGQLWLCADQAKQIWHCLAVNAVFPADREECFRWFGKLMGEEPDLDPGINKDFFENNILQLDPHLLTESGIKCFERFFKAVNSKEDKLKAIHRGYMLDNEDLIGKDYLWRVITTGGEEIASKAIDLLKEVSTALGPRLQENIAEFHEMFIGECCSRLRTHYGNIVILGKTQLQEELDAPDQSDNTNDESKDSKMRFIEAEKMCRILKVLQEYVKECDRSFSGDRVHLPLSRVTRGKNTILYIRFQNPGRSIDDMEIVTHSNETMAAFKRNLLKRIKGTSTANIKVDLFYANDEMIGVSDEINPLYQYTIRDKMNLTAKLTPVGTGLASSPDSSSDSSTGSPPRPCPDMQRVESESTLPGVIISQNYQYTEFFLKLYQLGSDLEHGRLRDSAKVLLHLLPCDRQTIRQLKIMCKVPKAAVTVAVTGDKIAKDEEEKLYPTEQAGIEDEEEHCTPEQMFLHPTPAQVLYNLSVLHGLLIPALDPLGESALLVQSAWMHSGCAHFVLELLTKNNFLPSADMHTKRASFQCVLRLAKLFLYIVGSVLSRVGDEPMICDLDNGSRSQVDILKQNFSTMPSSSQGTLRAISAKLAVILAREMLSASPEGDRCRTLFSSTLQWSCPDISTIKAVVQLAWASSCGNLQALGNSSGDFEDEVIVPDGQDFSMCKEALEVLTISFILNPSANEALTSDPNWPKFITSIVLKNPLRHVRQVASEQLFLASTYCAGDRRPFVYMVNLLVGALKTLVPQYESTCAEFFSVLCRTLSYGCIYNWPLQISEGLLGDEIKWLQRIRENVHATGDTQVHEELLEGHLCLAKELMFFLGADSKAQLNELIHELIDDFLFTASREFLHLRRHGSLRQDTVPPPVCRSPHTIAAACDLLIALCQLCVPNMKLLTNTLIDFVCTDTDPLREWDYLPPVGARPTKGFCGLKNAGATCYMNSVLQQLYMVPAVRVGILRAHGAATTDGEDFSGDSDLTGGGLGSALFSGPASALVSLPSSSSTIEDGLHDVRKNYHVVILKHVQAIFAHLGHSALQYYVPRGLWTHFKLLGEPVNLREQQDAVEFFMSLLESLDEGLKALGQPQLMNATLGGSFSDQKICQECPHRYSKEEPFSVFSVDIRNHSSLTESLEQYVKGELLEGADAYHCDKCDKKVVTVKRVCVKKLPPVLAIQLKRFEYDYERVCAIKFNDYFEFPRILDMEPYTVSGLAKLEGEVVEVGDNCQTNVETTKYELTGIVVHSGQASGGHYFSYILSKNPANGKCQWYKFDDGEVTECKMHEDEEMKAECFGGEYMGETYDNNLKRMQYRRQKRWWNAYMLFYTRCDQTPVQYEPSVEQLSLAESRNMVLPLPKPIERSVRHQNIRFLHSRSIFSVEFFNFIKKLVSCNLLSARSNKITPAAEELSLLGVQLASQFLFHTGFRTKKSLRGPVMEWYDALSHHIRSSALVRKWFANHALLSPPSRLGEYILMAPSPDVRTVFVKLVVFFCHFAINDEPLTGYDGANLCEQVLISVLRLLKSEAADYGKHLPHYFSLFSMYVGLGTREKQQLLRLNVPLQFIQVALDDGPGPAIKYQYPEFSKLHQVVSHLIRCSDVSEKCQSSNQNARPLSNPFKDPNVAHEELTPLSTECMDLLFNRTGYIKKVIEDTNVGDEGLKLLQYCSWENPHFSRAVLTELLWQCGFAYCHDMRHHTDLLLNILLIDDSWQHHRIHNALNGVAEEREGLLETIQRAKTHYQKRAYQIIKCLTQLFHKSPIALQMLHTNSNITRHWSIAVEWLQGELDRQRGIGCQYNSYSWSPPAQSNDNTNGYMLERSQSAKNTWSMAFELCPDEVSEKTDENNEPNLETNMDENKSEPVAQPGGVLEGSTGGTEQLPENKTPTTSSPSTAAWPARGDSNAIPRLSRQLFGAYTSTGSGSTSGGSAPTSALTTTAGSGANSETESSAQETTGETTINGLTNSLDQMEITAKKKCRRVIIKKLVESKDEEDATTATTAATTEVTTSPATAIATAATLEPAGMSELTTMVEKNLIISQENPQAKSSLQ", "sequence_length": 2778, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d703d22432651be5cb154f2a2482365ea4a0db83651675e667a268d0f2c05c48", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P55824.json", "taxon_id": "7227", "uniprot_accession": "P55824", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/usp-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00972", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/usp-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/usp-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00973", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/usp-2.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-ubp24-usp9x-y-pf25010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-ubp24-usp9x-y-pf25010.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf3517-pf12030.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf3517-pf12030.yaml" } ], "pfam_ids": [ "PF00443", "PF12030", "PF25010" ], "protein_name": "Ubiquitin carboxyl-terminal hydrolase 34", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCENCADLVEVLNEISDVEGGDGLQLRKEHTLKIFTYINSWTQRQCLCCFKEYKHLEIFNQVVCALINLVIAQVQVLRDQLCKHCTTINIDSTWQDESNQAEEPLNIDRECNEGSTERQKSIEKKSNSTRICNLTEEESSKSSDPFSLWSTDEKEKLLLCVAKIFQIQFPLYTAYKHNTHPTIEDISTQESNILGAFCDMNDVEVPLHLLRYVCLFCGKNGLSLMKDCFEYGTPETLPFLIAHAFITVVSNIRIWLHIPAVMQHIIPFRTYVIRYLCKLSDQELRQSAARNMADLMWSTVKEPLDTTLCFDKESLDLAFKYFMSPTLTMRLAGLSQITNQLHTFNDVCNNESLVSDTETSIAKELADWLISNNVVEHIFGPNLHIEIIKQCQVILNFLAAEGRLSTQHIDCIWAAAQLKHCSRYIHDLFPSLIKNLDPVPLRHLLNLVSALEPSVHTEQTLYLASMLIKALWNNALAAKAQLSKQSSFASLLNTNIPIGNKKEEEELRRTAPSPWSPAASPQSSDNSDTHQSGGSDIEMDEQLINRTKHVQQRLSDTEESMQGSSDETANSGEDGSSGPGSSSGHSDGSSNEVNSSHASQSAGSPGSEVQSEDIADIEALKEEDEDDDHGHNPPKSSCGTDLRNRKLESQAGICLGDSQGMSERNGTSSGTGKDLVFNTESLPSVDNRMRMLDACSHSEDPEHDISGEMNATHIAQGSQESCITRTGDFLGETIGNELFNCRQFIGPQHHHHHHHHHHHHDGHMVDDMLSADDVSCSSSQVSAKSEKNMADFDGEESGCEEELVQINSHAELTSHLQQHLPNLASIYHEHLSQGPVVHKHQFNSNAVTDINLDNVCKKGNTLLWDIVQDEDAVNLSEGLINEAEKLLCSLVCWFTDRQIRMRFIEGCLENLGNNRSVVISLRLLPKLFGTFQQFGSSYDTHWITMWAEKELNMMKLFFDNLVYYIQTVREGRQKHALYSHSAEVQVRLQFLTCVFSTLGSPDHFRLSLEQVDILWHCLVEDSECYDDALHWFLNQVRSKDQHAMGMETYKHLFLEKMPQLKPETISMTGLNLFQHLCNLARLATSAYDGCSNSELCGMDQFWGIALRAQSGDVSRAAIQYINSYYINGKTGLEKEQEFISKCMESLMIASSSLEQESHSSLMVIERGLLMLKTHLEAFRRRFAYHLRQWQIEGTGISSHLKALSDKQSLPLRVVCQPAGLPDKMTIEMYPSDQVADLRAEVTHWYENLQKEQINQQAQLQEFGQSNRKGEFPGGLMGPVRMISSGHELTTDYDEKALHELGFKDMQMVFVSLGAPRRERKGEGVQLPASCLPPPQKDNIPMLLLLQEPHLTTLFDLLEMLASFKPPSGKVAVDDSESLRCEELHLHAENLSRRVWELLMLLPTCPNMLMAFQNISDEQSNDGFNWKELLKIKSAHKLLYALEIIEALGKPNRRIRRESTGSYSDLYPDSDDSSEDQVENSKNSWSCKFVAAGGLQQLLEIFNSGILEPKEQESWTVWQLDCLACLLKLICQFAVDPSDLDLAYHDVFAWSGIAESHRKRTWPGKSRKAAGDHAKGLHIPRLTEVFLVLVQGTSLIQRLMSVAYTYDNLAPRVLKAQSDHRSRHEVSHYSMWLLVSWAHCCSLVKSSLADSDHLQDWLKKLTLLIPETAVRHESCSGLYKLSLSGLDGGDSINRSFLLLAASTLLKFLPDAQALKPIRIDDYEEEPILKPGCKEYFWLLCKLVDNIHIKDASQTTLLDLDALARHLADCIRSREILDHQDGNVEDDGLTGLLRLATSVVKHKPPFKFSREGQEFLRDIFNLLFLLPSLKDRQQPKCKSHSSRAAAYDLLVEMVKGSVENYRLIHNWVMAQHMQSHAPYKWDYWPHEDVRAECRFVGLTNLGATCYLASTIQQLYMIPEARQAVFTAKYSEDMKHKTTLLELQKMFTYLMESECKAYNPRPFCKTYTMDKQPLNTGEQKDMTEFFTDLITKIEEMSPELKNTVKSLFGGVITNNVVSLDCEHVSQTAEEFYTVRCQVADMKNIYESLDEVTIKDTLEGDNMYTCSHCGKKVRAEKRACFKKLPRILSFNTMRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKSERKEGFKEVSDHSKDSESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQLASECFGGEMTTKTYDSVTDKFMDFSFEKTHSAYMLFYKRMEPEEENGREYKFDVSSELLEWIWHDNMQFLQDKNIFEHTYFGFMWQLCSCIPSTLPDPKAVSLMTAKLSTSFVLETFIHSKEKPTMLQWIELLTKQFNNSQAACEWFLDRMADDDWWPMQILIKCPNQIVRQMFQRLCIHVIQRLRPVHAHLYLQPGMEDGSDDMDTSVEDIGGRSCVTRFVRTLLLIMEHGVKPHSKHLTEYFAFLYEFAKMGEEESQFLLSLQAISTMVHFYMGTKGPENPQVEVLSEEEGEEEEEEEDILSLAEEKYRPAALEKMIALVALLVEQSRSERHLTLSQTDMAALTGGKGFPFLFQHIRDGINIRQTCNLIFSLCRYNNRLAEHIVSMLFTSIAKLTPEAANPFFKLLTMLMEFAGGPPGMPPFASYILQRIWEVIEYNPSQCLDWLAVQTPRNKLAHSWVLQNMENWVERFLLAHNYPRVRTSAAYLLVSLIPSNSFRQMFRSTRSLHIPTRDLPLSPDTTVVLHQVYNVLLGLLSRAKLYVDAAVHGTTKLVPYFSFMTYCLISKTEKLMFSTYFMDLWNLFQPKLSEPAIATNHNKQALLSFWYNVCADCPENIRLIVQNPVVTKNIAFNYILADHDDQDVVLFNRGMLPAYYGILRLCCEQSPAFTRQLASHQNIQWAFKNLTPHASQYPGAVEELFNLMQLFIAQRPDMREEELEDIKQFKKTTISCYLRCLDGRSCWTTLISAFRILLESDEDRLLVVFNRGLILMTESFNTLHMMYHEATACHVTGDLVELLSIFLSVLKSTRPYLQRKDVKQALIQWQERIEFAHKLLTLLNSYSPPELRNACIDVLKELVLLSPHDFLHTLVPFLQHNHCTYHHSNIPMSLGPYFPCRENIKLIGGKSNIRPPRPELNMCLLPTMVETSKGKDDVYDRMLLDYFFSYHQFIHLLCRVAINCEKFTETLVKLSVLVAYEGLPLHLALFPKLWTELCQTQSAMSKNCIKLLCEDPVFAEYIKCILMDERTFLNNNIVYTFMTHFLLKVQSQVFSEANCANLISTLITNLISQYQNLQSDFSNRVEISKASASLNGDLRALALLLSVHTPKQLNPALIPTLQELLSKCRTCLQQRNSLQEQEAKERKTKDDEGATPIKRRRVSSDEEHTVDSCISDMKTETREVLTPTSTSDNETRDSSIIDPGTEQDLPSPENSSVKEYRMEVPSSFSEDMSNIRSQHAEEQSNNGRYDDCKEFKDLHCSKDSTLAEEESEFPSTSISAVLSDLADLRSCDGQALPSQDPEVALSLSCGHSRGLFSHMQQHDILDTLCRTIESTIHVVTRISGKGNQAAS", "sequence_length": 3546, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6be9a8d13c8b68c394dc7e205e7b44fa5d8c29289fabe327d0d513785b0824a2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q70CQ2.json", "taxon_id": "9606", "uniprot_accession": "Q70CQ2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf3517-pf12030.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf3517-pf12030.yaml" } ], "pfam_ids": [ "PF00443", "PF12030", "PF22900", "PF25010" ], "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9X", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTATTRGSPVGGNDNQGQAPDGQSQPPLQQNQTSSPDSSNENSPATPPDEQGQGDAPPQLEDEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLSKKGLDVKSEACQRFFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLELLAMALNPHCKFHIYNGTRPCESVSSSVQLPEDELFARSPDPRSPKGWLVDLLNKFGTLNGFQILHDRFINGSALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPIIEMVPQFLENLTDEELKKEAKNEAKNDALSMIIKSLKNLASRVPGQEETVKNLEIFRLKMILRLLQISSFNGKMNALNEVNKVISSVSYYTHRHGNPEEEEWLTAERMAEWIQQNNILSIVLRDSLHQPQYVEKLEKILRFVIKEKALTLQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKASWTNASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDLALSAHIKILDYSCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLSQTQRSPHVFYRHDLINQLQHNHALVTLVAENLATYMESMRLYARDHEDYDPQTVRLGSRYSHVQEVQERLNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVYLCDREACFKWYSKLMGDEPDLDPDINKDFFESNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAYMMDDLELIGLDYLWRVVIQSNDDIASRAIDLLKEIYTNLGPRLQVNQVVIHEDFIQSCFDRLKASYDTLCVLDGDKDSVNCARQEAVRMVRVLTVLREYINECDSDYHEERTILPMSRAFRGKHLSFVVRFPNQGRQVDDLEVWSHTNDTIGSVRRCILNRIKANVAHTKIELFVGGELIDPADDRKLIGQLNLKDKSLITAKLTQISSNMPSSPDSSSDSSTGSPGNHGNHYSDGPNPEVESCLPGVIMSLHPRYISFLWQVADLGSSLNMPPLRDGARVLMKLMPPDSTTIEKLRAICLDHAKLGESSLSPSLDSLFFGPSASQVLYLTEVVYALLMPAGAPLADDSSDFQFHFLKSGGLPLVLSMLTRNNFLPNADMETRRGAYLNALKIAKLLLTAIGYGHVRAVAEACQPGVEGVNPMTQINQVTHDQAVVLQSALQSIPNPSSECMLRNVSVRLAQQISDEASRYMPDICVIRAIQKIIWASGCGSLQLVFSPNEEITKIYEKTNAGNEPDLEDEQVCCEALEVMTLCFALIPTALDALSKEKAWQTFIIDLLLHCHSKTVRQVAQEQFFLMCTRCCMGHRPLLFFITLLFTVLGSTARERAKHSGDYFTLLRHLLNYAYNSNINVPNAEVLLNNEIDWLKRIRDDVKRTGETGIEETILEGHLGVTKELLAFQTSEKKFHIGCEKGGANLIKELIDDFIFPASNVYLQYMRNGELPAEQAIPVCGSPPTINAGFELLVALAVGCVRNLKQIVDSLTEMYYIGTAITTCEALTEWEYLPPVGPRPPKGFVGLKNAGATCYMNSVIQQLYMIPSIRNGILAIEGTGSDVDDDMSGDEKQDNESNVDPRDDVFGYPQQFEDKPALSKTEDRKEYNIGVLRHLQVIFGHLAASRLQYYVPRGFWKQFRLWGEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQGCPHRYECEESFTTLNVDIRNHQNLLDSLEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVLAIQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDNVNPESQLIQQSEQSESETAGSTKYRLVGVLVHSGQASGGHYYSYIIQRNGGDGERNRWYKFDDGDVTECKMDDDEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDTIDQDDELIRYISELAITTRPHQIIMPSAIERSVRKQNVQFMHNRMQYSMEYFQFMKKLLTCNGVYLNPPPGQDHLLPEAEEITMISIQLAARFLFTTGFHTKKVVRGSASDWYDALCILLRHSKNVRFWFAHNVLFNVSNRFSEYLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPFASPGPSSQAYDNLSLSDHLLRAVLNLLRREVSEHGRHLQQYFNLFVMYANLGVAEKTQLLKLSVPATFMLVSLDEGPGPPIKYQYAELGKLYSVVSQLIRCCNVSSRMQSSINGNPPLPNPFGDPNLSQPIMPIQQNVADILFVRTSYVKKIIEDCSNSEETVKLLRFCCWENPQFSSTVLSELLWQVAYSYTYELRPYLDLLLQILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAYQCIKCMVALFSNCPVAYQILQGNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPPVQSNETSNGYFLERSHSARMTLAKACELCPEEEPDDQDAPDEHESPPPEDAPLYPHSPGSQYQQNNHVHGQPYTGPAAHHMNNPQRTGQRAQENYEGSEEVSPPQTKDQ", "sequence_length": 2554, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0810d4501c0594713c19a489b63f4be4f8751688ea5208af68ac76f7b615b3a3", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q93008.json", "taxon_id": "9606", "uniprot_accession": "Q93008", "uniprot_release": "2026_03" } ], "pfam_id": "PF12030", "short_name": "DUF3517", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/brahma-complex-go0035060.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0035060", "section": "canonical_examples", "url": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01388", "PF12031" ], "protein_name": "AT-rich interactive domain-containing protein 1A", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1bd87af767bfd8e14ce94b3c3cbee580a4d98ccc7301b8d222bf96646e5be3a6", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"data/traits/sequence/profile/arid.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51011", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/arid.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/arid-dna-binding-domain-1-10-150-60.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.150.60", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/arid-dna-binding-domain-1-10-150-60.yaml" } ], "pfam_ids": [ "PF01388", "PF12031" ], "protein_name": "Trithorax group protein osa", "registry_status": 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"AT-rich interactive domain-containing protein 1B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"short_name": "DUF3519", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/vwa-subgroup-von-willebrand-factor-type-a-vwa-domain-was-originally-fo-cd01465.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd01465", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/vwa-subgroup-von-willebrand-factor-type-a-vwa-domain-was-originally-fo-cd01465.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", 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"NOT_ASSESSED", "record_id": "Pfam:PF12450", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/vwf-a-pf12450.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P76481", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00092", "PF12034", "PF12450" ], "protein_name": "Uncharacterized protein YfbK", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7cfe41b4c0928a2f9bd066ca86e2fbd87300aa8098de929d7c8b86aece198886", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRNKNIIMLLMSSLILSGCGPQPENKESQQQQPSTPTEQQVLAAQQAAIKEAEQSAAAAKALAQQEVQQYSDKQALQGRLQEAPTFARAAKAKATHIANPGTARYQQFDDNPVKQVAQNPLATFSLDVDTGSYANVRRFLNQGLLPPPDAVRVEEIVNYFPSDWDIKDKQSIPASKPIPFAMRYELAPAPWNEQRTLLKVDILAKDRKSEELPASNLVFLIDTSGSMISDERLPLIQSSLKLLVKELREQDNIAIVTYAGDSRIALPSISGSHKAEINAAIDSLDAEGSTNGGAGLELAYQQATKGFIKGGINRILLATDGDFNVGIDDPKSIESMVKKQRESGVTLSTFGVGNSNYNEAMMVRIADVGNGNYSYIDTLSEAQKVLNSEMRQMLITVAKDVKAQIEFNPAWVTEYRQIGYEKRQLRVEHFNNDNVDAGDIGAGKHITLLFELTLNGQKASIDKLRYAPDNKLAKSDKTKELAWLKIRWKYPQGKESQLVEFPLGPTINAPSEDMRFRAAVAAYGQKLRGSEYLNNTSWQQIKQWAQQAKGEDPQGYRAEFIRLIELADGVTDISQ", "sequence_length": 575, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7cfe41b4c0928a2f9bd066ca86e2fbd87300aa8098de929d7c8b86aece198886", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76481.json", "taxon_id": "83333", "uniprot_accession": "P76481", "uniprot_release": "2026_03" } ], "pfam_id": "PF12034", "short_name": "YfbK_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3522-pf12036.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3522-pf12036.yaml" } ], "pfam_ids": [ "PF12036", "PF31127" ], "protein_name": "Transmembrane protein 8B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNMPQSLGNQPLPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAVFAMRLLPVLDSGGVLSLELQLNASSVRQENVTVFGCLTHEVPLSLGDAAVTCSKESLAGFLLSVSATTRVARLRIPFPQTGTWFLALRSLCGVGPRFVRCRNATAEVRMRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVVKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATAWTVRSVRRRHCYPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGSVGFLLPPRAKTDHGVPSGARARGCGYQLCINEQEELGLVGPGGATVSSICAS", "sequence_length": 472, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6070c4e0603ffd36b9dbb487540e15cd34926198ecfe789b099d32a24b1db61f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A6NDV4.json", "taxon_id": "9606", "uniprot_accession": "A6NDV4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-skeletal-muscle-hypertrophy-go1904206.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1904206", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-skeletal-muscle-hypertrophy-go1904206.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3522-pf12036.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3522-pf12036.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A6NI61", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12036" ], "protein_name": "Protein myomaker", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3c577235ee6437de8980bd7a4490ce42c359d95187e55bec3a084c89e687b18d", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGTLVAKLLLPTLSSLAFLPTVSIAAKRRFHMEAMVYLFTLFFVALHHACNGPGLSVLCFMRHDILEYFSVYGTALSMWVSLMALADFDEPKRSTFVMFGVLTIAVRIYHDRWGYGVYSGPIGTAILIIAAKWLQKMKEKKGLYPDKSVYTQQIGPGLCFGALALMLRFFFEDWDYTYVHSFYHCALAMSFVLLLPKVNKKAGSPGTPAKLDCSTLCCACV", "sequence_length": 221, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3c577235ee6437de8980bd7a4490ce42c359d95187e55bec3a084c89e687b18d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6NI61.json", "taxon_id": "9606", "uniprot_accession": "A6NI61", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/myoblast-fusion-involved-in-skeletal-muscle-regeneration-go0014905.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0014905", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/myoblast-fusion-involved-in-skeletal-muscle-regeneration-go0014905.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-skeletal-muscle-hypertrophy-go1904206.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1904206", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-skeletal-muscle-hypertrophy-go1904206.yaml" } ], "pfam_ids": [ "PF12036" ], "protein_name": "Protein myomaker", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTVVAKLLLPTLSSLAFLPTVSIATKRRFYMEAMVYLFTMFFVAFSHACDGPGLSVLCFMRRDILEYFSIYGTALSMWVSLMALADFDEPQRSTFTMLGVLTIAVRTFHDRWGYGVYSGPIGTATLIIAVKWLKKMKEKKGLYPDKSIYTQQIGPGLCFGALALMLRFFFEEWDYTYVHSFYHCALAMSFVLLLPKVNKKAGNAGAPAKLTFSTLCCTCV", "sequence_length": 221, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "90df9690c757064d4ceaca98663f1f63fdc8a78faf6c9be52f81a46f7b9a8797", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D1N4.json", "taxon_id": "10090", "uniprot_accession": "Q9D1N4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3522-pf12036.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3522-pf12036.yaml" } ], "pfam_ids": [ "PF12036", "PF31127" ], "protein_name": "Post-GPI attachment to proteins factor 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGRAGTGTGGEAVAAVVAGPLLLLLLARPPPASAGYSGKSEVGLVSEHFSQAPQRLSFYSWYGSARLFRFRVPPDAVLLRWLLQVSRESGAACTDAEITVHFRSGAPPVINPLGTSFPDDTAVQPSFQVGVPLSTTPRSNASVNVSHPAPGDWFVAAHLPPSSQKIELKGLAPTCAYVFQPELLVTRVVEISIMEPDVPLPQTLLSHPSYLKVFVPDYTRELLLELRDCVSNGSLGCPVRLTVGPVTLPSNFQKVLTCTGAPWPCRLLLPSPPWDRWLQVTAESLVGPLGTVAFSAVAALTACRPRSVTIQPLLQSSQNQSFNASSGLLSPSPDHQDLGRSGRVDRSPFCLTNYPVTREDMDVVSVHFQPLDRVSVRVCSDTPSVMRLRLNTGMDSGGSLTISLRANKTEMRNETVVVACVNAASPFLGFNTSLNCTTAFFQGYPLSLSAWSRRANLIIPYPETDNWYLSLQLMCPENAEDCEQAVVHVETTLYLVPCLNDCGPYGQCLLLRRHSYLYASCSCKAGWRGWSCTDNSTAQTVAQQRAATLLLTLSNLMFLAPIAVSVRRFFLVEASVYAYTMFFSTFYHACDQPGEAVLCILSYDTLQYCDFLGSGAAIWVTILCMARLKTVLKYVLFLLGTLVIAMSLQLDRRGMWNMLGPCLFAFVIMASMWAYRCGHRRQCYPTSWQRWAFYLLPGVSMASVGIAIYTSMMTSDNYYYTHSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCHYQICKNDREELYAVT", "sequence_length": 771, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "476b2aadec41bdef484c48d67ab5a0cffc85b498db138974c66d2dc3d7915940", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HCN3.json", "taxon_id": "9606", "uniprot_accession": "Q9HCN3", "uniprot_release": "2026_03" } ], "pfam_id": "PF12036", "short_name": "DUF3522", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/atpase-domains-of-atpase-aaa-domain-protein-3a-atad3a-3b-and-3c-and-si-cd19512.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd19512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/atpase-domains-of-atpase-aaa-domain-protein-3a-atad3a-3b-and-3c-and-si-cd19512.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atpase-family-aaa-domain-containing-protein-3-n-terminal-ipr021911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atpase-family-aaa-domain-containing-protein-3-n-terminal-ipr021911.yaml" } ], "pfam_ids": [ "PF00004", "PF12037" ], "protein_name": "ATPase family AAA domain-containing protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSWLFGVQKNATPQIPDDFQAGAAPGGPQQPGQGQRQEGNSKMAYSFDSTALERAAKAARDLEKFPNAKEALELSRMQEVTRQKEVENETKKIEAQLANMKSEHIRVAEEERRKTLGEETKHAHSRAEYQDQLARKRAEEELAMKARMQEESLRKQEESVKKQEQLRKQTIEHELALKHKYELEKIDAETRARAKAARDNRDVNLEQMKLHEEENRKTVIEKIKTSGELIGSGLNQFLNDKTKIAAAVGGLTALAVGWYTAKRGTGVTARYIESRLGKPSLVRETSRITPLEVLKHPIKSVQMMTRQKKDPLNGVVLPPALERRLRDIAITTSNTKRNNGLFRNVMFYGPPGTGKTLFAKSLAQHSGLDYAVLTGGDIAPLGRDGVSAIHKVFDWASKSRKGLIVFIDEADAFLQKRSKNGMSEDTRAALNAFLFRTGEQSRKFMLVVASNQPEQFDWAVNDRFDQLVEFTLPGMEERERILLQYFNEHIVTPATSGSRSQRLKLDNFDWVAKCNEVAKKTSGMSGRELSKLVIGWQASAYASETGVLTEAIVDRNTADAMVQHEHKMEWLEKEQLKARNQEVKFGTTLKRETAV", "sequence_length": 595, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "77e0b7d7cc86567b59b504f07f7ea2090da9f1bb494bae55a3d3fdcc9f09f6dc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q20748.json", "taxon_id": "6239", "uniprot_accession": "Q20748", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/atpase-domains-of-atpase-aaa-domain-protein-3a-atad3a-3b-and-3c-and-si-cd19512.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd19512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/atpase-domains-of-atpase-aaa-domain-protein-3a-atad3a-3b-and-3c-and-si-cd19512.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atpase-family-aaa-domain-containing-protein-3-n-terminal-ipr021911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atpase-family-aaa-domain-containing-protein-3-n-terminal-ipr021911.yaml" } ], "pfam_ids": [ "PF00004", "PF12037" ], "protein_name": "ATPase family AAA domain-containing protein 3C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKDALNLAQMQEQTLQLEQQSKLKQLVNEDLRKQEESVQKHHQTFLESIRAAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTGRYIEARLGKPSLVRETSRITVLEALRHPIQQVSRRLLSRPQDVLEGVVLSPSLEARVRDIAIMTRNIKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLYRTGQHSNKFMLILASCHPEQFDWAINACIDVMVHFDLPGQEERARLVRMYLNEYVLKPATEGKRRLKLAQFDYGRKCLEIARLTEGMSCRKIAQLAVSWQATAYASKDGVLTEAMMDACVQDFVQQHQQMMRWLKGERPGPEDEQPSS", "sequence_length": 411, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4b904457845374e39148055202b8a906fddb3a2954df58f1deee45a9b079230a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T2N8.json", "taxon_id": "9606", "uniprot_accession": "Q5T2N8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/atpase-domains-of-atpase-aaa-domain-protein-3a-atad3a-3b-and-3c-and-si-cd19512.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd19512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/atpase-domains-of-atpase-aaa-domain-protein-3a-atad3a-3b-and-3c-and-si-cd19512.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atpase-family-aaa-domain-containing-protein-3-n-terminal-ipr021911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atpase-family-aaa-domain-containing-protein-3-n-terminal-ipr021911.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/atad3-n-pf12037.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12037", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/atad3-n-pf12037.yaml" } ], "pfam_ids": [ "PF00004", "PF12037" ], "protein_name": "ATPase family AAA domain-containing protein 3B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSWLFGVNKGPKGEGAGPPPPLPPAQPGAEGGGDRGLGDRPAPKDKWSNFDPTGLERAAKAARELEHSRYAKEALNLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRHKNEMLRVETEARARAKAERENADIIREQIRLKASEHRQTVLESIRTAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTGRFIEARLGKPSLVRETSRITVLEALRHPIQVSRRLLSRPQDVLEGVVLSPSLEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRKRATEEISKDLRATLNAFLYHMGQHSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERERLVRLHFDNCVLKPATEGKRRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAYASKDGVLTEAMMDACVQDAVQQYRQKMRWLKAEGPGRGVEHPLSGVQGETLTSWSLATDPSYPCLAGPCTFRICSWMGTGLCPGPLSPRMSCGGGRPFCPPGHPLL", "sequence_length": 648, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2af9251cdea3f8faebc68aada2068b53b272c01c69b644f953f1a61dcded4518", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T9A4.json", "taxon_id": "9606", "uniprot_accession": "Q5T9A4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/atpase-domains-of-atpase-aaa-domain-protein-3a-atad3a-3b-and-3c-and-si-cd19512.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd19512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/atpase-domains-of-atpase-aaa-domain-protein-3a-atad3a-3b-and-3c-and-si-cd19512.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atpase-family-aaa-domain-containing-protein-3-n-terminal-ipr021911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atpase-family-aaa-domain-containing-protein-3-n-terminal-ipr021911.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/atad3-n-pf12037.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12037", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/atad3-n-pf12037.yaml" } ], "pfam_ids": [ "PF00004", "PF12037" ], "protein_name": "ATPase family AAA domain-containing protein 3A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSWLFGIKGPKGEGTGPPLPLPPAQPGAEGGGDRGAGDRPSPKDKWSNFDPTGLERAAKAARELEHSRHAKEALSLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQIRVQAEERRKTLTEETRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAIRRATVEREMELRHKNEMLRVEAEARARAKADRENADIIREQIRLKAAEHRQTILESIRTAGTLLGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATSVAGRYIEARLGKPSLVRETSRISVLEALRHPIQVSRRLVSRPQDALEGVILSPSLEARVRDIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKVFDWASTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLHRTGQHSSKFMLVLASNQPEQFDWAINDRIDEMVCFALPQREERERLVRMYFDKYVLKPATEGKQRLKVAQFDYGKKCSEVAQLTEGMSGREIAQLAVAWQAMAYSSEDGVLTEAMMDARVQDAVQQHQQKMQWLKVERPDSQTNKPPHPSLLSC", "sequence_length": 591, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "58287ccfddf771361629cfbceb2843f38ed5fb7b820d9c3a6cf212b023250f6b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q925I1.json", "taxon_id": "10090", "uniprot_accession": "Q925I1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/atpase-domains-of-atpase-aaa-domain-protein-3a-atad3a-3b-and-3c-and-si-cd19512.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd19512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/atpase-domains-of-atpase-aaa-domain-protein-3a-atad3a-3b-and-3c-and-si-cd19512.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atpase-family-aaa-domain-containing-protein-3-n-terminal-ipr021911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atpase-family-aaa-domain-containing-protein-3-n-terminal-ipr021911.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/atad3-n-pf12037.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12037", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/atad3-n-pf12037.yaml" } ], "pfam_ids": [ "PF00004", "PF12037" ], "protein_name": "ATPase family AAA domain-containing protein 3A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSWLFGINKGPKGEGAGPPPPLPPAQPGAEGGGDRGLGDRPAPKDKWSNFDPTGLERAAKAARELEHSRYAKDALNLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRHKNEMLRVEAEARARAKAERENADIIREQIRLKAAEHRQTVLESIRTAGTLFGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATLVAGRFIEARLGKPSLVRETSRITVLEALRHPIQVSRRLLSRPQDALEGVVLSPSLEARVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLYRTGQHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPGQEERERLVRMYFDKYVLKPATEGKQRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAYASEDGVLTEAMMDTRVQDAVQQHQQKMCWLKAEGPGRGDEPSPS", "sequence_length": 586, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5a30f3f92f798b032cebca24d1fcf662acf735ee8f61f81f26027b25f3c01d97", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NVI7.json", "taxon_id": "9606", "uniprot_accession": "Q9NVI7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/atpase-domains-of-atpase-aaa-domain-protein-3a-atad3a-3b-and-3c-and-si-cd19512.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd19512", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/atpase-domains-of-atpase-aaa-domain-protein-3a-atad3a-3b-and-3c-and-si-cd19512.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atpase-family-aaa-domain-containing-protein-3-n-terminal-ipr021911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atpase-family-aaa-domain-containing-protein-3-n-terminal-ipr021911.yaml" } ], "pfam_ids": [ "PF00004", "PF12037" ], "protein_name": "ATPase family AAA domain-containing protein 3A homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSWLLGRNRQQPQPDQTAGFSEGGGAADPEGRTAGEKSGDSQLSRAERKAMEAYRFDSSALERAADAAKTLERSKHAREALELSKMQEATRQTEYNTKVKEYEAHIEQAKVEQKRIDHEERRKTLIEETKQQQQRAQYQDQLSRKRYEDQLLQQQRVQEENLRKQEESVQRQEAMRRQTIEHEIEMKEKNRLKLLEHELRAKARVDRENRDINLEKIRLKAQEHRTTVLEGIKTAGTVIGAGAEAMLTDWDKVLTAAGGLSLLALGVYTAKGATGVVSRYVEARIGKPTLVGETSRFAFLDALKNPLHYLKRLRAKPTDALQGVVLNPKLEERLRDIAIATKNTRINKGMYRNVLMHGPPGTGKTMFAKKLAEHSGMDFAIMTGGDVAPMGKEGVTAIHKVFDWSHTSRRGLLLFVDEADAFLRKRSSEKISEDLRAALNAFLYRTSEQNPKFMLVLASNTPEQFDYAINDRLDEMVEFTLPGLEERERLLRLYFDKYVLQPAAAGAKRFKLDTFDYGKTCSKMAALCEGMSGREISKLGVSWQAAVYASEDGLLTEKMVLDRCYSAAQQHKQKMAWLSDQERADHKSITGTAAPPLTLTAKKL", "sequence_length": 604, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c854fdc7f78ad2bda6e56bd0f45968bd93fdd4278af03588f15e4233b8780aa", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VEX6.json", "taxon_id": "7227", "uniprot_accession": "Q9VEX6", "uniprot_release": "2026_03" } ], "pfam_id": "PF12037", "short_name": "ATAD3_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trna-queuosine-34-beta-mannosyltransferase-activity-go0016438.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016438", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trna-queuosine-34-beta-mannosyltransferase-activity-go0016438.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trna-queuosine-alpha-mannosyltransferase-n-terminal-ipr022701.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/qtman-n-pf12038.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12038", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/qtman-n-pf12038.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q4AE62", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00534", "PF12038" ], "protein_name": "tRNA-queuosine alpha-mannosyltransferase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "717240b327558fe530c7817cfd76c67c4278263b0109f85cbbae38fae4a3c767", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSILIIEAFYGGSHKQLVDLLQEELGDCVVYTLPAKKWHWRARTSALYFSQTIPISEHYRTLFASSVLNLTELAALRPDLGKLKKILYFHENQLIYPVKKCQERDFQYGYNQILSCLVADVVVFNSVFNMESFLTSMGKFMKLIPDHRPKDLESIIRPKCQVIYFPIRFPDVSRFMPKHKTTHLKKMLGLKGNGGAVLSMALPFQPEQRDSEDLLKNFNSECDTHCGLDTARQEYLGNSLRQESDLKKSTSSDNSSSHHGENKQNLTVDPCDILGGVDNQQRLLHIVWPHRWEHDKDPESFFKVLMHLKDLGLNFHVSVLGETFTDVPDIFSEAKKALGSSVLHWGYLPSKDDYFQVLCMADVVISTAKHEFFGVAMLEAVYCGCYPLCPKDLVYPEIFPAEYLYSTPEQLSKRLQNFCKRPDIIRKHLYKGEIAPFSWAALHGKFRSLLTTEPREDL", "sequence_length": 458, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "717240b327558fe530c7817cfd76c67c4278263b0109f85cbbae38fae4a3c767", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4AE62.json", "taxon_id": "9606", "uniprot_accession": "Q4AE62", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trna-queuosine-34-beta-mannosyltransferase-activity-go0016438.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016438", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trna-queuosine-34-beta-mannosyltransferase-activity-go0016438.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/glycosyltransferase-family-1-and-related-proteins-with-gtb-topology-gl-cd01635.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd01635", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/glycosyltransferase-family-1-and-related-proteins-with-gtb-topology-gl-cd01635.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trna-queuosine-alpha-mannosyltransferase-n-terminal-ipr022701.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022701", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trna-queuosine-alpha-mannosyltransferase-n-terminal-ipr022701.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/qtman-n-pf12038.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12038", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/qtman-n-pf12038.yaml" } ], "pfam_ids": [ "PF00534", "PF12038" ], "protein_name": "tRNA-queuosine alpha-mannosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSIVIIEAFYGGSHRQLVELLREELDDCVLYTLPAKKWHWRARTAALYFSQNIPSSEHYRTLFASSVLNLTELAALRPDLGKLKKILYFHENQLVYPVKKYQERDFQYGYNQILSCLVADVVVFNSSFNMESFLTSIGKFLKLIPDHRPKDLESIIRPKCQVIYFPIRFPDVSRFMPKHKIAHLRRMLSLIGDAAASQSVAPCPQPGQRVSEKSPENCESKSDEHPDLDAEQEALDNPSVHKSGSLPVSKENLPLDPSTLLCGAEDPQRPLHITWPHRWEHDKDPETFLKILMSLKQLNLNFHVSVLGETFTDTPDIFSEAKKALGSSVLHWGYLPRKEDYFRVLCMADVVISTAKHEFFGVAMLEAVYCGCYPLCPKALVYPEIFPAEYLYSTPEQLSKRLKSFCKRPDIIRKHLYKGEVAPFSWAALHGKFRSLLTTEPREDL", "sequence_length": 445, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ce2c857c19cf7d0ed0f77df70fa2d286045fe576f805e8d07166d7496f8692d5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BW56.json", "taxon_id": "10090", "uniprot_accession": "Q8BW56", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trna-queuosine-34-beta-mannosyltransferase-activity-go0016438.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016438", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trna-queuosine-34-beta-mannosyltransferase-activity-go0016438.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trna-queuosine-alpha-mannosyltransferase-n-terminal-ipr022701.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022701", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trna-queuosine-alpha-mannosyltransferase-n-terminal-ipr022701.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/qtman-n-pf12038.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12038", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/qtman-n-pf12038.yaml" } ], "pfam_ids": [ "PF00534", "PF12038" ], "protein_name": "tRNA-queuosine alpha-mannosyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSCAKPHILIIEPFYGGSHKQLIGALIEGLNHGDSEIFSLPAKKWHWRARTSALHFAQLIPRDHAFRVLFASSVLSLAELIGLRPDLAACRKIVYFHENQLIYPVREVKQRDCQYGFNEILSCLAADMVLFNSQFNCNSFLDNVQPFLNMQPDFKIKHIREQIEKKCQVLYFPVNFERFPIRKECVKGETAEDLDEKCIHLIWPHRWEHDKNPKLLVDTLCQLHERQVDFKVTICGESYQEIPEEFEHIQEKLGSKLVNFGHLEREEYLKTLLTGDIVISTADHEFFGVAMLEAAFCGCYPIAPNKLVYPEIYPKENLYNTSNALTKKLYNFCRMPRVFRKQRDQFFENFNFDRFSAKELVPKYLDIFNKHIADEQS", "sequence_length": 377, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3e3db6ec3df293e582a47e0a4f2a40b7d78ae63a0307943b206cd5bc374dce47", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VXN0.json", "taxon_id": "7227", "uniprot_accession": "Q9VXN0", "uniprot_release": "2026_03" } ], "pfam_id": "PF12038", "short_name": "QTMAN_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cryphonectria hypovirus 1 (strain EP713)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3525-pf12039.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12039", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3525-pf12039.yaml" } ], "pfam_ids": [ "PF03569", "PF12039" ], "protein_name": "ORFB polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYKEAERPIEVWRTQVMDGPTWTALSESCRDRLFFASGEGGEHMTLDIIQPDSYTKIRLFRSGRFEVSVDGKSFGQGGNRYRFVFRYDSLLSTPFGYPAEDKEIALQDYNHKQLLGEMFLKLPDSYVDGRPIAEAFFRYVDDLKWDVGVFRDRRSLTELHLPASSGLTTAQVSVAKLEWPPLPIIQAQPTILAGIIDNFKICFPVNGKWIYGQGLSWTRYDGDASVPTSLLSNRQHARFWNEKDIPTGLKLSKEGFIKLWAQKSRKWQDHMARSIGLSHEAAVELVRATRVNEAKPHLVPMEEAKEAPRQQLVPRRSTFVDNHEEEVEIDTLRVPVEEGRCFELLFNNQVTPAIFDKKPLLKDVLGVFEENVCTMDSLEISHSDQCVHIVAGETFRNYDEIKAVLEVILENEPDILVGAEEGSVADYVKAGKHFLFENHQWVRNGLKLAKGLAEPGQRAKDNTNPSTPRPIEDADYIHPFDNGQPLPGRSDQWVSGFEVTRLRHHDEMPHIRSVRNTGIHGLPGDFLSNYPRLPTPVFHRLRDLWDDVIGILMKLEFGDNCSPVLNVTANADWVRSETTINFISDQPGKAQSRPREDGGFDILVPCRGIATRSIRLLPLFIRLPNRFRAVALLNGRQSDYDNYGWPVFNPVIPLPQMDSFYVEAVAAGRSMYPPGFLLGRYDALEYLVHTATVYGAEEAFLLPFTHHVRVYPPPRPGREIPFGSWCKNYKFEAERFWYDADWKLRVHETNHDFDRLIEITKTCRRNPPEENLQAKLEDTARKVCSVWQYNIMIASSVAFLVPLYFTLYVPYLQFYLHVDPGDYILLPPVLWLVWTNLCYGYACDAWCRLFFFVEEAGKKELVHSSEEFSSDPSSTLLIPTMGTRGDHVPPRFFANMAVLAGVKTHLLKLQTATYGDLENLKKGKLGSLLPGYLQNHYSVLRGYKAAFTPHVELDMPNATSYNLAPPRSYINKIRYLTDENRSGASMIDRAVTWFAEELADTFWPDWQIGCLRGCNLPRSADGVSLITKQPNLKTGKIGWLHGSADPAVVPKDIRDKYPLVPNGDHNEIFRHYDKIYMPGGAGAVQTAIACGCEVVVTDVNLDRDYHTMPTQKDFHQPSILPYFAWLWRQGFDVKLPRVLLVIGWLKFHYSIRYKHLEFAADFVIRAGLFWWYGCLHLLPFMAAAIMAPRFVKKYLVGMAWLTEPGLLMLKALWRFPIFMVTPRWMLPFIVTVSVYNWWWPLSQDGLNYASKRFELIFEPVTRGKHTFSYPFGHWCLRDTNSMIVYEGKFVNPSETSIGSPFKLSKSVRPVRPGAVFHLVPFHVQKLLDSMDEAPLPYSANHNCTTVILKGIMYRSALGFVFAYMVSWAVYLVLRPPQAAATVYHWVYPERSWDTSRLYHLLLGFAAGGTVPMEVIDEEHVEEKPSVAGQSEPAAEIDNDKISDYDQEWWGSQDSIDTVVNDLCYLLSFLKDTAIPEEVKLDVVELAYTQLVQDEKERIPEPKGTKILDMPNWKPGNWAKLIDETHRVLSQFTQYTPRVLNELVVWLKGLGENLYRVAEPILMLLVRAMRAAKSVSDRATRSVYHCLCHWLDVMYGGSAPTRVKTVWGLTGLVASGMTSQKAILAQNIAMMEYQGRGNFLDDYDNFVSNIKEPGKGLPGINTIGGPQRRPIRYKNPVMSHQAAEICGLKPGEYEVDDRYQERINDYLAEGIPQAVDGVLFGDRNPDRIARSISRYEPEYSGCSPEDKALVEDTARAMFEQWPEVFADRDIMLPKGVELYIKEKYSAGTPFISSFYKSRKALKQAGVMDVIRKNALECISTGKYPTQFYHAFAKSQAVPGQPLLAPRMKDLRTVVSEDLSAYMVDQIFQIEANKRITWETYGAGSGMPLSQSMARIWDELHDLRKREGGQFIIADATAYDSNCKPALFHGAGKLVELGFQNHPSGKGRQFAQVVQCKFEAMQNAWVMGITEPSYTALTFHVPDVAVRHELESKYPAHFATFSELLAHNNVNVTEWKRLSWEERKACARDMQAVPGKVFLTNDPALRLQGSSWQGSFTTEPKRDEFRKYQTYFYDSKAAMREDIKRIVFANREVISNVHHKNRGGGTGQSATSWDNTATFKLGVISAWARATGKPPKDFFCSNRLYNTSDDTVWWSKDLLSSAEVDRFKQAAADFGILLEIGSTKKITEVEYLSKLPRRPTAEDSADYRAWRQGRIENMRSSGRFSEEQLLSIEREQLPQFLMVQNPTAILMRRTAFRYYQSSPSKFLYTSCERGAGHALVTAFQPALYKRFAIEYAEDLNRLCKEHHINQRYELVSQQDRMKMQVINVNPNWKRNFKLSPRQEAFLRWIRQAKFPSYRQVLDIHLRIRDPDPSAHDRFIAKLDRAWRNPDEGIRDIVDGVYRYTDMIPEEFKRFMPSTDMLYAENPWHTHNQYVEKFIYLKLLETTTVDELTFAQFDAVAKESPYGICMNTIKFWEDLRDPDYLKDLLASEAMIDKVRIYQGMTVIISAMYFAMHWVELFIQSLFLIGPLYNLFMWSFWGLSKVYGLANTFYWHGKARSSREISSILPRDPYMWSKRFVSTMADFIPERFALGIVPVTLVLDGLAEIIEVLFGRMWRLFANLKSVGTDFSDARSGKSLNVPSNPWAAYAHTYATKAIEHGHVTVAAKTASGKSTFFPAAVWAERRNIGIKKLWIVMPRKILRDNWEIPFDIRSQIVKRGKTLDPSADIYVTTYGHFRTRIGGLVPRDNLVFFDEFHEMDGFMLQDVEDWKGPTIFMSATPVALHGMAGIPFLEPTLPKRFNLTVYKVDSDDVLEMWNRARNQFADQPELLARPMIIVPTYNELKKTIAGLENLDRSITWHEVSSNSPLVPKTGGLVCTPYVQTGIDIKPAPSILIDSGRDVIVHKGRLVTPHPYTDEKTNEQRVNRVGRTMDGVVIQPQLAGTGNPPVKYPSGIFFSSELVAGQYKVPRLTKVNGCVHPELPYMSIKYTSELSDPAKAREEEQSVTKSLLFIHLMALAGVRQSEWALRYNRYFELHLPFGEDEDHLERILTSGKLRYANHIPVDMAMQLLGNGHVTWGIGGVPTITRPRYPCDGMWVEDPSSRKSYAHKVLLHQREHAEIGMWQAQVNELRAQNLALQSQLRSACTRRSTAGRILRHTRPPDIPVCG", "sequence_length": 3165, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a96f665bf0fbd5a4315b9c1787d0512200360319e1e32e8dcb8a261b861cfed3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q04350.json", "taxon_id": "12478", "uniprot_accession": "Q04350", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cryphonectria hypovirus 1 (strain Euro7)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3525-pf12039.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12039", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3525-pf12039.yaml" } ], "pfam_ids": [ "PF03569", "PF12039" ], "protein_name": "ORFB polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYKEAERPIEVWRTQVMDGPTWTALSEPCRNRLFFASGKGGEHLTLDVIQPDSYTKIRLFRSGRFEVSVDGKSFGQGGNRYRFVFRYDSLLSTPFGYPAEDKEMALQGYNHEQLLGEMFLKLPDSYVDGRPIAEAFFRYVDDLKWDVGVFRDRRSLTELHLPASSGLTTEQARVAKLEWPPLPIIQAQPTILAGIIDNFKICFPVNGKWVYGQGLSWTRYDGDASVPISLLTNRQHARFWNDKDVPTGLKLSKEGFIKLWAQKSRKWQDHMARAIGLSHAATAELVRATKVNEAKPHLVPMEEAKEAPRQQLVPRRSTFVDSHEKGVEVDPLRLPTEEGRCFELLFNNQVTPAIFDKKPLLRDVLAVFKENVCTMDSLEISHSDRCVHIVTGETFRNYKEIKAVLEVIIWNDPNILVGAEEGSIADYVKAGKHFLFENHQWVRNGLKLAKGLAEPGQLAKDNTNPSTPKPIETTDYIHPFDNGQPLPGRSDQWVSGFEVTRLRHHEEMPHIRNVRNTGIHGLPGDFLSNYPRLPTPVFHRLRDLWYDVIGILMKLEFGDNRSPVLNVTANADWVRSETTVNFISDQPGKARSRPRKDGGFDILVPCRGIATRSIRLLPLFIRLPPRFKAVALLNGRQSDYDNYGWPVFNPVIPLPQIDSFYVEAVAAGRSMYPPGFLLDRYDALGFLIHTATVYGAEEAFLLPFTHHARVYPPPRPGREIAFGSWCKNYKFTAERYWYDADWKLRVHETNHDFDRLIEITKTCRRNPPEENLQARLKDTAREVCSIWQYNIMIASSVAFLIPLFYTLYVPYLQFYLHVDPGDYMLLPPVLWLVWTNLCYGYACDAWCRLFFFVEEAGKKELVHSSEEFSSDPSSTLLIPTMGTRGDHVPPRFFANMAVLAGVKTHLLKLQTATYGDLENLKKGKLGSLLPGYLQNHYSVLRGYKAVFTPHVELDMPNATSYNLAPPRSYINKIRYLTDENRSGASIVDRAVTWFAEELADTFWPDWQIGCLRGCNLPRSADGVSLITKRPNLKTGKIGWLHGSADPAVVPKDIRDRYPLVPNGDHNEIFRHYDKIYMPGGAGAVQTAIACGCEVVVTDVNLDRDYHTMPTQKDFHQPSILPYFAWLWRQGFDVKLPRVLLVVGWLKFHYSIRYKHLEFAADFVIRAGLFWWYGCLHLLPFMAAAIMTPRFVKKYLVSMAWLTEPGLLMLKALWRFPIFMVTPRWMLPFIVTVSAYNWWWPLSQDGLNYASKRFELIFEPVARGKYTFSYPFGHWCLRDTNSMIIYEGKFVDSSETSIGSPFKLSKSVRPVRPGAVFHLVPFHIQKLLDSMDEEPLPYSANHNCTTVILKGIMYRSALGFVFAYAVSWAVYLVLRPPQAAATVYHWMYPERSWDTSRLYHLLGFAAGGTVPMEVIDEEPIEEKPSDAGRSEPIPDNDKQEESDYDQEWWGSQDSIDTVSNDLCYLLSFLKDTAIPEEVKLDVIELAYTQFVRNEKGRIPEPKETRILVMPNWKPDNWARLIDETHRVLSQFTHYTPRVLNELVVWLKGLGENLYRVAEPILMLLVRAMRAAKSVSDRATRSIYHCLCHWLDVMYGGSAPTRVKTVWGLTGLIASGMTSQKAILAQNIAMMEYQGRGNFLDDYDNFVSNIKEPGKGLPGINTIGGPQRRPIRYKNPVMSHQAAEICGLKPGEYEVDEKYQERINDYLAEGIPQAVDGVLFGDRNPDRIARSINRYEPEYSGCSPEDKALVEDTARAMFEQWPEVFADRDIMLPKGVELYIKEKYSAGTPFISSFYKSRKALKQAGVMDVIRKNALECIKTGKYPTQFYHAFAKSQAVPGQPLLAPRMKDLRTVVSEDLSAYMVDQIFQIEANKRITWETYGAGSGMPLSQSMARIWDELHDLRKREGGQFIIADATAYDSNCKPVLFHGAGKLVELGFQNHPSGKGRQFAQVVQCKFEAMQNAWVMGITEPSYSALTFHVPDAEVRRDLESKFPRHFVTFSELLEHNNMNVTEWKRLTWEEQKACARDMQSVPGKVFLTNDPALRLQGSSWQGSFTTEPKRDEFRKYQTYFCNSKEAMKEDIKRIVFANREVISNVHHKNRGGGTGQSATSWDNTATFKLGVISAWARATGKLPKDFFCSNRLYNTSDDTVWWSKDLLSSAEVDRFKQAAADFGILLEIGSTKKITEVEYLSKLPRRPTAEDSADYRTWRQGRIENMRSSGRFTEEQMLSIEREQLPQFLMVQNPTAILMRRTAFRYYQSSPSKFLYTSCERGAGHALVTAFQPALYKRFAIEYAEDLNRLCKEHHINQRYELVSQQDRIKMQVINVNPNWKQGFRLSPRQEAFLRWIRQAKFPSYRQVLDIHLRTKDPDPSAHDRFIAKLDRAWRNPDEGIRDMVDGVYRYTDLIPEEFKRFMPSTDMLYAENPWHTHNQYVEKFIYLKLLETTTVDELTFAQFDAVAKESPYGICMNTIKFWEDLRDPDYLKDLLASEAMIDKVRIYQGMTVIISAMYFAMHWVELFVQSLFLIGPLYNLFMWSFWGLSKVYGLANTFYWHGKARSSREISSIMPRDPYMWSKRFVSTMADFIPERFALGLVPATLILDGLAEIIEVLFGRMWRMFANLKSVGTDFGDARSGKSLNVPSNPWAAYAHTYATKAIEHGHVTVAAKTASGKSTFFPAAVWAERRNIGVKKLWIVMPRKILRDNWEIPFDIRSQIVKRGKTLDPTADIYITTYGHFRTRIGGLVPRDNLVFFDEFHEMDGFMLQDVEEWKGPTIFMSATPVALHGMADIPFLEPTLPKRFNLTVYKVDSDDVLEMWNRARNQFADQPALLARPMIIVPTYNELKKTIAGLENLDRSVTWHEVSSNSPFVPKTGGLVCTPYVQTGIDIKPAPSILIDSGRDVVVHKGRLITPHPYTDEKTNEQRVNRVGRTMDGVVIQPQLAGTGDPPVKYPSGIFFSSRLVAGQYRVPRLTEVDGCVHPELPYISIKYTSELSNPVEAKKEEQNVRKSLLFIHLMALAGVRQSEWALRYNRYFELHLPFGEDEDHLQRILEQGKLRYAHHIPVDMAMQLLGNGHVTWGIGGVPTITRPRYPCDGMWVEDPSSRKSYVHKVLLHQREHAEIGMWQAQVNELKAQKLALQSQLRSVCTRRSTASRILRHIRPPDIPVCG", "sequence_length": 3164, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "777df38a91cbc79695921d3fc60eb86ffb36300a49a39b76a06a601af924b8d1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9YTU2.json", "taxon_id": "321609", "uniprot_accession": "Q9YTU2", "uniprot_release": "2026_03" } ], "pfam_id": "PF12039", "short_name": "DUF3525", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12040", "short_name": "DUF3526", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12043", "short_name": "DUF3527", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { 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"6e3de56a331047fd520970800fc0331fad42562c7a43b416306cf7268dbb5743", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFSTVSSFLPQAPSRQISYPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPLL", "sequence_length": 304, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6e3de56a331047fd520970800fc0331fad42562c7a43b416306cf7268dbb5743", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O43248.json", "taxon_id": "9606", "uniprot_accession": "O43248", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-cell-development-go0010720.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010720", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-cell-development-go0010720.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"pfam_ids": [ "PF00046", "PF12045" ], "protein_name": "Homeobox protein Hox-D11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVREVAFRDYGLERAKWPYRGGGGGGAGGGGGGGPGGGGGGSGGYAPYYAAAAAAAAAAAAAEEAAMQRDLLPPAGRRPDVLFKAPEPVCGAPGPPHGPAAAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPQPAPAPPQPEGAADKGDPKPGAGGGGGSPCAKATPGPEPKGAAEGGGGEGEGPPGEAGAEKSGGTVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF", "sequence_length": 323, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d828cd1e77b7f8f29963be2f5e5ae66265185c056fb46a87635333eee09237b5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P23813.json", "taxon_id": "10090", "uniprot_accession": "P23813", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-cell-development-go0010720.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010720", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-cell-development-go0010720.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3528-homeobox-protein-eukaryotic-ipr021918.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021918", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3528-homeobox-protein-eukaryotic-ipr021918.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3528-pf12045.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12045", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3528-pf12045.yaml" } ], "pfam_ids": [ "PF00046", "PF12045" ], "protein_name": "Homeobox protein Hox-A11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSAEELVHRDCLQAPSAAGVPGDVLAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPLL", "sequence_length": 313, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "21220cff4bc6b893c52060221006af0fc072015ce542c206353d49c90ad6a852", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P31270.json", "taxon_id": "9606", "uniprot_accession": "P31270", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3528-homeobox-protein-eukaryotic-ipr021918.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021918", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3528-homeobox-protein-eukaryotic-ipr021918.yaml" } ], "pfam_ids": [ "PF00046", "PF12045" ], "protein_name": "Homeobox protein Hox-D11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNDFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVREVAFRDYGLERAKWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF", "sequence_length": 338, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ad6123d7fb9b24f3fa7e70d394345c216f10e0ff8836480bac4bf4f1d05a55e6", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P31277.json", "taxon_id": "9606", "uniprot_accession": "P31277", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cartilage-development-involved-in-endochondral-bone-morphogenesis-go0060351.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0060351", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cartilage-development-involved-in-endochondral-bone-morphogenesis-go0060351.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-cell-development-go0010720.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010720", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-cell-development-go0010720.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-chondrocyte-differentiation-go0032330.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032330", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-chondrocyte-differentiation-go0032330.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3528-homeobox-protein-eukaryotic-ipr021918.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021918", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3528-homeobox-protein-eukaryotic-ipr021918.yaml" } ], "pfam_ids": [ "PF00046", "PF12045" ], "protein_name": "Homeobox protein Hox-A11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"MAQQQSSRLNRLLTLLDTGSTQATRLTAAKQIGDIAKSHPQDLSSLLRKVLHHLRSKKWDTRVAAAHAIGAIVLNVKHPSLSELLNSLATKLGEAGISDNVDEVVAFRNLQSKILANAPFRSFEMNKVLEFGALLASGGQEYDILNDNSKNPRDRVARQKKNLRRRLGLDMCEQFMDVNEMIRDEDLIEQKSNVPANGVGNRLYANCSPHHIQQFVSRMVPRVNSRRPSARELNLLKRKAKISSKDQAKGSCEVADVEMSSSHVASTSKRILSDSLDSSKADIGNEDDIEPDGDGKWPFHSFVEQLILDMFDPAWEIRHGSVMALREILMLHGGSAGVSTEEFSSDNGFELKDVLNKVTREREIDLNMQVSENELEPLRKRPKIEDPSKSFIDNTVLEVIGGDYDINVKDEDAEFLLPPVKVNGQTDCSSTKLEPQSSMDDSTSHSEINHVAEVNNHFEDKSFIEEPVIPKQQEENLEVLDLVKQARHSWIKNFEFLQDCTIRFLCVLSLDRFGDYISDQVVAPVREACAQALGATFKYMNPSLIYETLNILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLQDLLGYILPACKAGLEDSDDDVRAVAADALIPAAAAIVSLRGQTLLSIVMLLWDILLELDDLSPSTSSIMNLLAEIYSQDDMTLVMHEELSLGEEQNIELNEMGHIESIGERRDVKESPYALSGLAPRLWPFTRHDITSVRFSAIRTLERLLEAGCRKNISGQSKSSFWPSSILGDTLRIVFQNLLLESTEEILECSERVWRLLVQCPVDDLEDTAKFYMASWIELAATPYGSTLDATKMFWPVAPPRKSHFKAAAKMKAVKLENEASSILGFDYARSSASLEKQEDASARSTKIIVGSDMEMSVTRTRVVTASALGIFASRLREGSMQFVVDPLSSTLTSMSGVQRQVGSIVLISWFRETKCKAPSDGSGSLPGFPSPLKKWLLDLLACADPAFPTKDIFLPYAELSRTYTKMRNEASQLLHTVETCHCFDKLLSTNKLNVESVTADETIDFASTLDLWNKESAGNESLEKQVFEDVESSRQQLLSTAGYLKCVQSNLHITVTSLVAAAVVWMSEFPARLNPIILPLMASIKREQEQILQQIAAEALAELIAYCVDRKPSPNDKLIKNICSLTCMDPSETPQASIISSMDIVDDMDFLSSRSNTGKQKAKVVLASGEDRSKVEGFITRRGSELALKHLSLKFGGSLFDKLPKLWECLTEVLVPEIPSDQQKIDLKIESISDPQVLINNIQVVRSIAPVMEETLKPRLLSLLPCIFKCVRHSHVAVRLAASRCVMTMAKSMTTDVMAAVVESAIPMLGDLTCISGRQGAGMLIGLLVQGLGVELVPYSPLLVVPLLRCMSDVDSSVRQSVTRSFAALVPMLPLARGVPPPVGLSKDLSSNAEDAKFLEQLLDNSHIDDYKLCTELKVQLRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAIVASDAAERRGSTDELDVFPSIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLREQFNNHNVIITSYDVVRKDVDYLTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKEEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNADVAPTKASTHVFQALQYLLKLCSHPLLVLGDKVTEPVASDLAAMINGCSDIITELHKVQHSPKLVALQEILEECGIGSDASSSDGTLSVGQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINAENASMKTMNTDQLLDLFASAETSKKGGGSSKKGSEDNDQIAGTGKGMKAILGNLEELWDQSQYTEEYNLSQFLTKLNG", "sequence_length": 2045, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "182e3b8f4018629db856db8a8285ac7b745b61f1de2dd205923a375b21bfb482", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B5BT18.json", "taxon_id": "3702", "uniprot_accession": "B5BT18", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3535-pf12054.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12054", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3535-pf12054.yaml" } ], "pfam_ids": [ "PF00176", "PF00271", "PF12054" ], "protein_name": "TATA-binding protein-associated factor 172", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVSRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSANWDTRIAAGQAVEAIVKNVPEWNPVPRTRQEPTSESSMEDSPTTERLNFDRFDICRLLQHGASLLGSAGAEFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFNDEDLDYTPTSASFVNKQPTLQAAELIDSEFRAGMSNRQKNKAKRMAKLFAKQRSRDAVETNEKSNDSTDGEPEEKRRKIANVVINQSANDSKVLIDNIPDSSSLIEETNEWPLESFCEELCNDLFNPSWEVRHGAGTGLREILKAHGKSGGKMGDSTLEEMIQQHQEWLEDLVIRLLCVFALDRFGDFVSDEVVAPVRETCAQTLGVVLKHMNETGVHKTVDVLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKVLTRIIEGLQDLDDDVRAVAAASLVPVVESLVYLQTQKVPFIINTLWDALLELDDLTASTNSIMTLLSSLLTYPQVQQCSIQQSLTVLVPRVWPFLHHTISSVRRAALETLFTLLSTQDQNSSSWLIPILPDMLRHIFQFCVLESSQEILDLIHKVWMELLSKASVQYVVAAACPWMGAWLCLMMQPSHLPIDLNMLLEVKARAKEKTGGKVRQGQSQNKEVLQEYIAGADTIMEDPATRDFVVMRARMMAAKLLGALCCCICDPGVNVVTQEIKPAESLGQLLLFHLNSKSALQRISVALVICEWAALQKECKAVTLAVQPRLLDILSEHLYYDEIAVPFTRMQNECKQLISSLADVHIEVGNRVNNNVLTIDQASDLVTTVFNEATSSFDLNPQVLQQLDSKRQQVQMTVTETNQEWQVLQLRVHTFAACAVVSLQQLPEKLNPIIKPLMETIKKEENTLVQNYAAQCIAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTPCVTCPVPTQSGQENSKGSTSEKDGMHHTVTKHRGIITLYRHQKAAFAITSRRGPTPKAVKAQIADLPAGSSGNILVELDEAQKPYLVQRRGAEFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTIDINNFDGKSLLDKGDSPAQELVNSLQVFETAAASMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARCVGVMSKIATMETMNIFLEKVLPWLGAIDDSVKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLGRMSDQTDSVRFMATQCFATLIRLMPLEAGIPDPPNMSAELIQLKAKERHFLEQLLDGKKLENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSLK", "sequence_length": 1849, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5d23e5e873a4c3e1c9db76f87fed232564ceee61b9cf0313433d614d300faa27", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O14981.json", "taxon_id": "9606", "uniprot_accession": "O14981", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3535-pf12054.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12054", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3535-pf12054.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P32333", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00176", "PF00271", "PF12054" ], "protein_name": "TATA-binding protein-associated factor MOT1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b2b7d9aeb8bb25207258a8a7edfd4287c2c66af5b9b77c51ad669939985ad22f", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTSRVSRLDRQVILIETGSTQVVRNMAADQMGDLAKQHPEDILSLLSRVYPFLLVKKWETRVTAARAVGGIVAHAPSWDPNESDLVGGTNEGSPLDNAQVKLEHEMKIKLEEATQNNQLNLLQEDHHLSSLSDWKLNEILKSGKVLLASSMNDYNVLGKADDNIRKQAKTDDIKQETSMLNASDKANENKSNANKKSARMLAMARRKKKMSAKNTPKHPVDITESSVSKTLLNGKNMTNSAASLATSPTSNQLNPKLEITEQADESKLMIESTVRPLLEQHEIVAGLVWQFQGIYELLLDNLMSENWEIRHGAALGLRELVKKHAYGVSRVKGNTREENNLRNSRSLEDLASRLLTVFALDRFGDYVYDTVVAPVRESVAQTLAALLIHLDSTLSIKIFNCLEQLVLQDPLQTGLPNKIWEATHGGLLGIRYFVSIKTNFLFAHGLLENVVRIVLYGLNQSDDDVQSVAASILTPITSEFVKLNNSTIEILVTTIWSLLARLDDDISSSVGSIMDLLAKLCDHQEVLDILKNKALEHPSEWSFKSLVPKLYPFLRHSISSVRRAVLNLLIAFLSIKDDSTKNWLNGKVFRLVFQNILLEQNPELLQLSFDVYVALLEHYKVKHTEKTLDHVFSKHLQPILHLLNTPVGEKGKNYAMESQYILKPSQHYQLHPEKKRSISETTTDSDIPIPKNNEHINIDAPMIAGDITLLGLDVILNTRIMGAKAFALTLSMFQDSTLQSFFTNVLVRCLELPFSTPRMLAGIIVSQFCSSWLQKHPEGEKLPSFVSEIFSPVMNKQLLNRDEFPVFRELVPSLKALRTQCQSLLATFVDVGMLPQYKLPNVAIVVQGETEAGPHAFGVETAEKVYGEYYDKMFKSMNNSYKLLAKKPLEDSKHRVLMAINSAKESAKLRTGSILANYASSILLFDGLPLKLNPIIRSLMDSVKEERNEKLQTMAGESVVHLIQQLLENNKVNVSGKIVKNLCGFLCVDTSEVPDFSVNAEYKEKILTLIKESNSIAAQDDINLAKMSEEAQLKRKGGLITLKILFEVLGPSILQKLPQLRSILFDSLSDHENEEASKVDNEQGQKIVDSFGVLRALFPFMSDSLRSSEVFTRFPVLLTFLRSNLSVFRYSAARTFADLAKISSVEVMAYTIREILPLMNSAGSLSDRQGSTELIYHLSLSMETDVLPYVIFLIVPLLGRMSDSNEDVRNLATTTFASIIKLVPLEAGIADPKGLPEELVASRERERDFIQQMMDPSKAKPFKLPIAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRKEDYEKTRSVESRALPSLIICPPSLTGHWENEFDQYAPFLKVVVYAGGPTVRLTLRPQLSDADIIVTSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRLKEDVLSDLPPKIIQDYYCELGDLQKQLYMDFTKKQKNVVEKDIENSEIADGKQHIFQALQYMRKLCNHPALVLSPNHPQLAQVQDYLKQTGLDLHDIINAPKLSALRTLLFECGIGEEDIDKKASQDQNFPIQNVISQHRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTVVNQQNSGLASMDTHQLLDLFDPDNVTSQDNEEKNNGDSQAAKGMEDIANETGLTGKAKEALGELKELWDPSQYEEEYNLDTFIKTLR", "sequence_length": 1867, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b2b7d9aeb8bb25207258a8a7edfd4287c2c66af5b9b77c51ad669939985ad22f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32333.json", "taxon_id": "559292", "uniprot_accession": "P32333", "uniprot_release": "2026_03" } ], "pfam_id": "PF12054", "short_name": "DUF3535", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12055", "short_name": "DUF3536", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12056", "short_name": "DUF3537", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bag6-pf12057.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bag6-pf12057.yaml" } ], "pfam_ids": [ "PF00240", "PF12057", "PF20960" ], "protein_name": "Large proline-rich protein BAG6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEESGVIEVTVKTLDSQSRTFTVRGEWTVKQFKEHIAASVEISVDKQRLIYQGKVLQDERTLTEYNVDGKVIHLVERPPPQSSQPGGGGGGVSGSSGAADGGSSSSQSSAYTTSHDRNANNYVMLGTFNLPVNIMDPQQIQMSVQQMLAGVGEMGRNVRVSTSTGSSGSVDVHINVDQSVQSEPRMRLHLAENLLRETQALIHRLEGQSSEPSQQETPPPQPSSSSFSAHPMDSSPPPPSVSSSASQTEGETQSGPNHPSPLELVEVLSEVRRVEERLRPFMERTHSILGAATSADYNNNTQEREEDQRTLNLIGESLHLLGNTLVALSDLRCNLSAQPPRHLHVVRPMSHYTSPVMMQSGLPHIPIPMNLGSTVTMTSNSRQTSDGQPQPPHSSNQSDQQGQAPPTPANESNQQTGHGQGTPRVIRITHQTMEPVVMMQMNLDGTTVPLHVPGLPPEFMQAIMHQISQQAVTMATAASAGHQGQQQGTAGAGAQNGESPVPPPPQARVVITRPTLSPRVPQPMGTRGTTINLRAAVPPPSGQQTNQMVSGLVGQLLLPLHTGDQTSTTSSSHSFSFSTSSSTSSSSSFSSASPPLSSANTSGQTSTHTTSTASVGQAQESGPGDNLAQLLGSLLGGAAGAGGGVSGATPSITVTVPGVPAFIQGLSEFIQSGQPVFPSPNQQPPPSQATPPSAPSGPAPTTAPSGGAETLSPELFTGIVQGVLSTMMGSLGAGQGNTESIAQFIQRLSQTSNLFTPGAGDAVGFFGDLLSLVCQSFSMVDMVLLLHGNPQPLSRIQPQLTAFFTEHYLQGREPTDANIASASEDLINELEEYIAESFSTVTVREGVDIIQTNMSFLRQQFTRMATHILRCTDNTFGQRLLYLCTQGLFECLALNLYCLRGEQRALTTVINHRIRRMSAEVNPSLVNWLTSMMSMRLHVILEHNPVTEDQIQHYVIYTQSESARRTEAGSQSSQQSQNMNVEEGLSPAPATTAEEALRSTGDTDGDEAPGRPSAEETRGAVAMATTEREESTGEAEPWAATVPPEWVPIIRRDMLTQRKMKAQPPLSDAYMHGMPAKRRKTAQGEGPHLSLTEAVSRAARTAGVRPVTAPDSLQGELETPELQEAYAQQVKSDIKKRLSDDPDYNHQRFPNTHRVFSEDA", "sequence_length": 1160, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "62b61685b02663159bb16dfae78a5ff6984642c3ee04ad4e653358c0157ba0c8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A3KPW9.json", "taxon_id": "7955", "uniprot_accession": "A3KPW9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/bat3-complex-go0071818.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071818", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/bat3-complex-go0071818.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/misfolded-protein-binding-go0051787.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051787", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/misfolded-protein-binding-go0051787.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/polyubiquitin-modification-dependent-protein-binding-go0031593.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031593", "section": "canonical_examples", "url": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bag6-bags-pf20960.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bag6-pf12057.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bag6-pf12057.yaml" } ], "pfam_ids": [ "PF00240", "PF12057", "PF20960" ], "protein_name": "Large proline-rich protein BAG6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPSDSASTAMEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPPQTQLPSGASSGTGSASATHGGAPLPGTRGPGASVHDRNANSYVMVGTFNLPSDGSAVDVHINMEQAPIQSEPRVRLVMAQHMIRDIQTLLSRMECRGGTQAQASQPPPQTPQTVASETVALNSQTSEPVESEAPPREPMESEEMEERPPTQTPELAPSGPAPAGPAPAGPAPAPETNAPNHPSPAEHVEVLQELQRLQRRLQPFLQRYCEVLGAAATTDYNNNHEGREEDQRLINLVGESLRLLGNTFVALSDLRCNLACAPPRHLHVVRPMSHYTTPMVLQQAAIPIQINVGTTVTMTGNGARPPPAPGAEAATPGSAQATSLPPSSTTVDSSTEGAPPPGPAPPPASSHPRVIRISHQSVEPVVMMHMNIQDSGAQPGGVPSAPTGPLGPPGHGQTLGQQVPGFPTAPTRVVIARPTPPQARPSHPGGPPVSGALQGAGLGTNTSLAQMVSGLVGQLLMQPVLVAQGTPGMAQAQAQAQAQAQAQAQAPAPAPAPAPAPATASASAGTTNTATTAGPAPGGPAQPPPPQPSAADLQFSQLLGNLLGPAGPGAGGPGMASPTITVAMPGVPAFLQGMTDFLQASQTAPPPPPPPPPPPPAPEQQSTPPPGSPSGGTASPGGLGPESLPPEFFTSVVQGVLSSLLGSLGARAGSSESIAAFIQRLSGSSNIFEPGADGALGFFGALLSLLCQNFSMVDVVMLLHGHFQPLQRLQPQLRSFFHQHYLGGQEPTPSNIRMATHTLITGLEEYVRESFSLVQVQPGVDIIRTNLEFLQEQFNSIAAHVLHCTDSGFGARLLELCNQGLFECLALNLHCLGGQQMELAAVINGRIRRMSRGVNPSLVSWLTTMMGLRLQVVLEHMPVGPDAILRYVRRVGDPPQTLPEEPMEVQGAERTSPEPQRENASPAPGTTAEEAMSRGPPPAPEGGSRDEQDGASADAEPWAAAVPPEWVPIIQQDIQSQRKVKPQPPLSDAYLSGMPAKRRKTMQGEGPQLLLSEAVSRAAKAAGARPLTSPESLSRDLEAPEVQESYRQQLRSDIQKRLQEDPNYSPQRFPNAHRAFADDP", "sequence_length": 1154, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "44a20a2278ea109eacc1efe256b05d827c7236599f2c8c95920b697965062586", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z1R2.json", "taxon_id": "10090", "uniprot_accession": "Q9Z1R2", "uniprot_release": "2026_03" } ], "pfam_id": "PF12057", "short_name": "BAG6", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12058", "short_name": "PipX", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12059", "short_name": "DUF3540", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12060", "short_name": "DUF3541", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12061", "short_name": "NB-LRR", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/atg1-like-mit2-pf21127.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21127", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/atg1-like-mit2-pf21127.yaml" } ], "pfam_ids": [ "PF00069", "PF12063", "PF21127" ], "protein_name": "Serine/threonine-protein kinase ULK1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPGRGGVETVGKFEFSRKDLIGHGAFAVVFKGRHREKHDLEVAVKCINKKNLAKSQTLLGKEIKILKELKHENIVALYDFQEMANSVYLVMEYCNGGDLADYLHTMRTLSEDTVRLFLQQIAGAMRLLHSKGIIHRDLKPQNILLSNPGGRRANPSNIRVKIADFGFARYLQSNMMAATLCGSPMYMAPEVIMSQHYDGKADLWSIGTIVYQCLTGKAPFQASSPQDLRLFYEKNKTLVPAIPRETSAPLRQLLLALLQRNHKDRMDFDEFFHHPFLDASTPIKKSPPVPVPSYPSSGSGSSSSSSSASHLASPPSLGEMPQLQKTLTSPADAAGFLQGSRDSGGSSKDSCDTDDFVMVPAQFPGDLVAEAASAKPPPDSLLCSGSSLVASAGLESHGRTPSPSPTCSSSPSPSGRPGPFSSNRYGASVPIPVPTQVHNYQRIEQNLQSPTQQQTARSSAIRRSGSTTPLGFGRASPSPPSHTDGAMLARKLSLGGGRPYTPSPQVGTIPERPSWSRVPSPQGADVRVGRSPRPGSSVPEHSPRTTGLGCRLHSAPNLSDFHVVRPKLPKPPTDPLGATFSPPQTSAPQPCPGLQSCRPLRGSPKLPDFLQRSPLPPILGSPTKAGPSFDFPKTPSSQNLLTLLARQGVVMTPPRNRTLPDLSEASPFHGQQLGSGLRPAEDTRGPFGRSFSTSRITDLLLKAAFGTQASDSGSTDSLQEKPMEIAPSAGFGGTLHPGARGGGASSPAPVVFTVGSPPSGATPPQSTRTRMFSVGSSSSLGSTGSSSARHLVPGACGEAPELSAPGHCCSLADPLAANLEGAVTFEAPDLPEETLMEQEHTETLHSLRFTLAFAQQVLEIAALKGSASEAAGGPEYQLQESVVADQISQLSREWGFAEQLVLYLKVAELLSSGLQTAIDQIRAGKLCLSSTVKQVVRRLNELYKASVVSCQGLSLRLQRFFLDKQRLLDGIHGVTAERLILSHAVQMVQSAALDEMFQHREGCVPRYHKALLLLEGLQHTLTDQADIENIAKCKLCIERRLSALLSGVYA", "sequence_length": 1051, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9da2f7d7bfddebc647b76e542ec95679d3b3eafd37a2eb7dc303fc5795ce2657", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O70405.json", "taxon_id": "10090", "uniprot_accession": "O70405", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/atg1-like-mit1-pf12063.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/atg1-like-mit1-pf12063.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/atg1-like-mit2-pf21127.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21127", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/atg1-like-mit2-pf21127.yaml" } ], "pfam_ids": [ "PF00069", "PF12063", "PF21127" ], "protein_name": "Serine/threonine-protein kinase ULK1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPGRGGTETVGKFEFSRKDLIGHGAFAVVFKGRHREKHDLEVAVKCINKKNLAKSQTLLGKEIKILKELKHENIVALYDFQEMANSVYLVMEYCNGGDLADYLHAMRTLSEDTIRLFLQQIAGAMRLLHSKGIIHRDLKPQNILLSNPAGRRANPNSIRVKIADFGFARYLQSNMMAATLCGSPMYMAPEVIMSQHYDGKADLWSIGTIVYQCLTGKAPFQASSPQDLRLFYEKNKTLVPTIPRETSAPLRQLLLALLQRNHKDRMDFDEFFHHPFLDASPSVRKSPPVPVPSYPSSGSGSSSSSSSTSHLASPPSLGEMQQLQKTLASPADTAGFLHSSRDSGGSKDSSCDTDDFVMVPAQFPGDLVAEAPSAKPPPDSLMCSGSSLVASAGLESHGRTPSPSPPCSSSPSPSGRAGPFSSSRCGASVPIPVPTQVQNYQRIERNLQSPTQFQTPRSSAIRRSGSTSPLGFARASPSPPAHAEHGGVLARKMSLGGGRPYTPSPQVGTIPERPGWSGTPSPQGAEMRGGRSPRPGSSAPEHSPRTSGLGCRLHSAPNLSDLHVVRPKLPKPPTDPLGAVFSPPQASPPQPSHGLQSCRNLRGSPKLPDFLQRNPLPPILGSPTKAVPSFDFPKTPSSQNLLALLARQGVVMTPPRNRTLPDLSEVGPFHGQPLGPGLRPGEDPKGPFGRSFSTSRLTDLLLKAAFGTQAPDPGSTESLQEKPMEIAPSAGFGGSLHPGARAGGTSSPSPVVFTVGSPPSGSTPPQGPRTRMFSAGPTGSASSSARHLVPGPCSEAPAPELPAPGHGCSFADPITANLEGAVTFEAPDLPEETLMEQEHTEILRGLRFTLLFVQHVLEIAALKGSASEAAGGPEYQLQESVVADQISLLSREWGFAEQLVLYLKVAELLSSGLQSAIDQIRAGKLCLSSTVKQVVRRLNELYKASVVSCQGLSLRLQRFFLDKQRLLDRIHSITAERLIFSHAVQMVQSAALDEMFQHREGCVPRYHKALLLLEGLQHMLSDQADIENVTKCKLCIERRLSALLTGICA", "sequence_length": 1050, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "80662fd4ba93c571a522d273b5ad78b688b7e8733925685af0dd3f176c9f498d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O75385.json", "taxon_id": "9606", "uniprot_accession": "O75385", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/atg1-like-mit1-pf12063.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/atg1-like-mit1-pf12063.yaml" } ], "pfam_ids": [ "PF00069", "PF12063", "PF21127" ], "protein_name": "Serine/threonine-protein kinase ATG1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDIKNKDHTTSVNHNLMASAGNYTAEKEIGKGSFATVYRGHLTSDKSQHVAIKEVSRAKLKNKKLLENLEIEIAILKKIKHPHIVGLIDCERTSTDFYLIMEYCALGDLTFLLKRRKELMENHPLLRTVFEKYPPPSENHNGLHRAFVLSYLQQLASALKFLRSKNLVHRDIKPQNLLLSTPLIGYHDSKSFHELGFVGIYNLPILKIADFGFARFLPNTSLAETLCGSPLYMAPEILNYQKYNAKADLWSVGTVVFEMCCGTPPFRASNHLELFKKIKRANDVITFPSYCNIEPELKELICSLLTFDPAQRIGFEEFFANKVVNEDLSSYELEDDLPELESKSKGIVESNMFVSEYLSKQPKSPNSNLAGHQSMADNPAELSDALKNSNILTAPAVKTDHTQAVDKKASNNKYHNSLVSDRSFEREYVVVEKKSVEVNSLADEVAQAGFNPNPIKHPTSTQNQNVLLNEQFSPNNQQYFQNQGENPRLLRATSSSSGGSDGSRRPSLVDRRLSISSLNPSNALSRALGIASTRLFGGANQQQQQQQITSSPPYSQTLLNSQLFHELTENIILRIDHLQHPETLKLDNTNIVSILESLAAKAFVVYSYAEVKFSQIVPLSTTLKGMANFENRRSMDSNAIAEEQDSDDAEEEDETLKKYKEDCLSTKTFGKGRTLSATSQLSATFNKLPRSEMILLCNEAIVLYMKALSILSKSMQVTSNWWYESQEKSCSLRVNVLVQWLREKFNECLEKADFLRLKINDLRFKHASEVAENQTLEEKGSSEEPVYLEKLLYDRALEISKMAAHMELKGENLYNCELAYATSLWMLETSLDDDDFTNAYGDYPFKTNIHLKSNDVEDKEKYHSVLDENDRIIIRKYIDSIANRLKILRQKMNHQN", "sequence_length": 897, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e948097b291a7e496e96c9c9d3bc72f1fc8dc7958822a2d5c21d08849da019fd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53104.json", "taxon_id": "559292", "uniprot_accession": "P53104", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/atg1-like-mit1-pf12063.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/atg1-like-mit1-pf12063.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/atg1-like-mit2-pf21127.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21127", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/atg1-like-mit2-pf21127.yaml" } ], "pfam_ids": [ "PF00069", "PF12063", "PF21127" ], "protein_name": "Serine/threonine-protein kinase ULK2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVVGDFEYSKRDLVGHGAFAVVFRGRHRQKTDWEVAIKSINKKNLSKSQILLGKEIKILKELQHENIVALYDVQELPNSVFLVMEYCNGGDLADYLQAKGTLSEDTIRVFLHQIAAAMRILHSKGIIHRDLKPQNILLSYANRRKSSVSGIRIKIADFGFARYLHSNMMAATLCGSPMYMAPEVIMSQHYDAKADLWSIGTVIYQCLVGKPPFQANSPQDLRMFYEKNRSLMPSIPRETSPYLANLLLGLLQRNQKDRMDFEAFFSHPFLEQGPVKKSCPVPVPMYSGSVSGSSCGSSPSCRFASPPSLPDMQHIQEENLSSPPLGPPNYLQVSKDSASTSSKNSSCDTDDFVLVPHNISSDHSCDMPVGTAGRRASNEFLVCGGQCQPTVSPHSETAPIPVPTQIRNYQRIEQNLTSTASSGTNVHGSPRSAVVRRSNTSPMGFLRPGSCSPVPADTAQTVGRRLSTGSSRPYSPSPLVGTIPEQFSQCCCGHPQGHDSRSRNSSGSPVPQAQSPQSLLSGARLQSAPTLTDIYQNKQKLRKQHSDPVCPSHTGAGYSYSPQPSRPGSLGTSPTKHLGSSPRSSDWFFKTPLPTIIGSPTKTTAPFKIPKTQASSNLLALVTRHGPAEEQSKDGNEPRECAHCLLVQGSERQRAEQQSKAVFGRSVSTGKLSDQQGKTPICRHQGSTDSLNTERPMDIAPAGACGGVLAPPAGTAASSKAVLFTVGSPPHSAAAPTCTHMFLRTRTTSVGPSNSGGSLCAMSGRVCVGSPPGPGFGSSPPGAEAAPSLRYVPYGASPPSLEGLITFEAPELPEETLMEREHTDTLRHLNVMLMFTECVLDLTAMRGGNPELCTSAVSLYQIQESVVVDQISQLSKDWGRVEQLVLYMKAAQLLAASLHLAKAQIKSGKLSPSTAVKQVVKNLNERYKFCITMCKKLTEKLNRFFSDKQRFIDEINSVTAEKLIYNCAVEMVQSAALDEMFQQTEDIVYRYHKAALLLEGLSRILQDPADIENVHKYKCSIERRLSALCHSTATV", "sequence_length": 1036, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c48b4cb53e7f08301b2d1d8866a54aed244dc5f57aaa092ecd568507910226e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IYT8.json", "taxon_id": "9606", "uniprot_accession": "Q8IYT8", "uniprot_release": "2026_03" } ], "pfam_id": "PF12063", "short_name": "ATG1-like_MIT1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zmynd8-cc-pf23460.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23460", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zmynd8-cc-pf23460.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3544-pf12064.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3544-pf12064.yaml" } ], "pfam_ids": [ "PF00439", "PF00628", "PF00855", "PF12064", "PF23460", "PF24324" ], "protein_name": "MYND-type zinc finger-containing chromatin reader ZMYND8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDISTRSKDPGSAERTAQKRKFPSPPHSSNGHSPQDTSTSPIKKKKKPGLLNSNNKEQSELRHGPFYYMKQPLTTDPVDVVPQDGRNDFYCWVCHREGQVLCCELCPRVYHAKCLRLTSEPEGDWFCPECEKITVAECIETQSKAMTMLTIEQLSYLLKFAIQKMKQPGTDAFQKPVPLEQHPDYAEYIFHPMDLCTLEKNAKKKMYGCTEAFLADAKWILHNCIIYNGGNHKLTQIAKVVIKICEHEMNEIEVCPECYLAACQKRDNWFCEPCSNPHPLVWAKLKGFPFWPAKALRDKDGQVDARFFGQHDRAWVPINNCYLMSKEIPFSVKKTKSIFNSAMQEMEVYVENIRRKFGVFNYSPFRTPYTPNSQYQMLLDPTNPSAGTAKIDKQEKVKLNFDMTASPKILMSKPVLSGGTGRRISLSDMPRSPMSTNSSVHTGSDVEQDAEKKATSSHFSASEESMDFLDKSTASPASTKTGQAGSLSGSPKPFSPQLSAPITTKTDKTSTTGSILNLNLDRSKAEMDLKELSESVQQQSTPVPLISPKRQIRSRFQLNLDKTIESCKAQLGINEISEDVYTAVEHSDSEDSEKSDSSDSEYISDDEQKSKNEPEDTEDKEGCQMDKEPSAVKKKPKPTNPVEIKEELKSTSPASEKADPGAVKDKASPEPEKDFSEKAKPSPHPIKDKLKGKDETDSPTVHLGLDSDSESELVIDLGEDHSGREGRKNKKEPKEPSPKQDVVGKTPPSTTVGSHSPPETPVLTRSSAQTSAAGATATTSTSSTVTVTAPAPAATGSPVKKQRPLLPKETAPAVQRVVWNSSSKFQTSSQKWHMQKMQRQQQQQQQQNQQQQPQSSQGTRYQTRQAVKAVQQKEITQSPSTSTITLVTSTQSSPLVTSSGSMSTLVSSVNADLPIATASADVAADIAKYTSKMMDAIKGTMTEIYNDLSKNTTGSTIAEIRRLRIEIEKLQWLHQQELSEMKHNLELTMAEMRQSLEQERDRLIAEVKKQLELEKQQAVDETKKKQWCANCKKEAIFYCCWNTSYCDYPCQQAHWPEHMKSCTQSATAPQQEADAEVNTETLNKSSQGSSSSTQSAPSETASASKEKETSAEKSKESGSTLDLSGSRETPSSILLGSNQGSDHSRSNKSSWSSSDEKRGSTRSDHNTSTSTKSLLPKESRLDTFWD", "sequence_length": 1186, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "78c6bdb417ce3dc0658b9f79fd5c5f351c2e72fa2c7bd259125eabf50dffd884", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ULU4.json", "taxon_id": "9606", "uniprot_accession": "Q9ULU4", "uniprot_release": "2026_03" } ], "pfam_id": "PF12064", "short_name": "DUF3544", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12065", "short_name": "DUF3545", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serrate-ars2-c-terminal-ipr007042.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007042", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serrate-ars2-c-terminal-ipr007042.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serrate-ars2-n-terminal-ipr021933.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serrate-ars2-n-terminal-ipr021933.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/serrate-ars2-n-pf12066.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12066", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/serrate-ars2-n-pf12066.yaml" } ], "pfam_ids": [ "PF04959", "PF12066", "PF28978" ], "protein_name": "Serrate RNA effector molecule homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVDSDDDGDRRRDKFARERRDEDYRRGGGGFNRYDNKRPGGRRDDYQVKRSRGDDADDSFDPVSRSGNGSDLPTESDSIYSGPLQTFKKFLTSQEDDISEEDAIKKYNEYKTEHRKHQLERFFRAHKDEEWFRLKYKPDDAKKLREAHLENVQKRLQVFNELKEQGQFNKFSLDFGDAEAIIRMLDSVVVKLENGTEDELKAVLAQKLEDESLADIKKDENGNGTEQPKEEPEVKQESGATEELEEGAIEDGTEKSSNKVNIHRTCSVFLRNIPPGLTYEELEGLCKKSPGFLRLALTDGIAERKFYRRGWATFKRDINIKEICWALNAHRLRETDLNAIINRDITRRVRTNNGIASHKQVAINDLKLAVKLTVLYDKKIGLFNAADEADADREMDIRMGVDLVAASTNPLIKEVKSLVPHDVLNDISEEEAELLGVSNGGEAPAEKIRFERDDNILKALDLLIVYLRIVHSIDFYNHGHYAQEDSMPNRCGLIHVRGQPPSGVSITTDEDGALVVPQKFVNDFISGFNSRIEKGLIEKQYVSEEELEKMGKKDGEKEVEAFIQKNTVELAKDKWLCPLSGKKFKGPEFIRKHLQSKHEDKLEEARAEADFFNNYLADAQRPVDCEPKQAPRDDHRGGGGGERGGYGRERDDDRGPGGGGRNSFGGGGYDRRPQFPPRHSLGGRGGGGRYFEDAPRRQPVSYRDLDAPDDIP", "sequence_length": 712, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f6410c46b37f810a0214427e9bf847d9e5614638bd7f000100be6f7a0962f1bb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q966L5.json", "taxon_id": "6239", "uniprot_accession": "Q966L5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/mrna-cap-binding-complex-binding-go0140262.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140262", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/mrna-cap-binding-complex-binding-go0140262.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serrate-ars2-c-terminal-ipr007042.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007042", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serrate-ars2-c-terminal-ipr007042.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serrate-ars2-n-terminal-ipr021933.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serrate-ars2-n-terminal-ipr021933.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/serrate-ars2-n-pf12066.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12066", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/serrate-ars2-n-pf12066.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q99MR6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04959", "PF12066", "PF28978" ], "protein_name": "Serrate RNA effector molecule homolog", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a6e8108f971df11183a06366d069cbbd73d9af940ca7757566b2319f88b0b305", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_02", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGDSDDEYDRRRRDKFRRERSDYDRSRERDERRRGDDWNDREWDRGRERRSRGEYRDYDRNRRERFSPPRHELSPPQKRMRRDWDEHSSDPYHSGYDMPYAGGGGGPTYGPPQPWGHPDVHIMQHHVLPIQARLGSIAEIDLGVPPPIMKSFKEFLLSLDDSVDETEAVKRYNDYKLDFRRQQMQDFFLAHKDEEWFRSKYHPDEVGKRRQEARGALQNRLKVFLSLMESGWFDNLLLDIDKADAIVKMLDAAVIKMEGGTENDLRILEQEEEEEQAGKTGEASKKEEARAGPALGEGERKANDKDEKKEDGKQAENDSSNDDKTKKSEGDGDKEEKKEEAEKEAKKSKKRNRKQSGDDSFDEGSVSESESESEGGQAEEEKEEAEEALKEKEKPKEEEKEKPKDAAGLECKPRPLHKTCSLFMRNIAPNISRAEIISLCKRYPGFMRVALSEPQPERRFFRRGWVTFDRSVNIKEICWNLQNIRLRECELSPGVNRDLTRRVRNINGITQHKQIVRNDIKLAAKLIHTLDDRTQLWASEPGTPPVPTSLPSQNPILKNITDYLIEEVSAEEEELLGSSGGPPPEEPPKEGNPAEINVERDEKLIKVLDKLLLYLRIVHSLDYYNTCEYPNEDEMPNRCGIIHVRGPMPPNRISHGEVLEWQKTFEEKLTPLLSVRESLSEEEAQKMGRKDPEQEVEKFVTSNTQELGKDKWLCPLSGKKFKGPEFVRKHIFNKHAEKIEEVKKEVAFFNNFLTDAKRPALPEIKPAQPPGPAQILPPGLTPGLPYPHQTPQGLMPYGQPRPPILGYGAGAVRPAVPTGGPPYPHAPYGAGRGNYDAFRGQGGYPGKPRNRMVRGDPRAIVEYRDLDAPDDVDFF", "sequence_length": 875, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a6e8108f971df11183a06366d069cbbd73d9af940ca7757566b2319f88b0b305", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q99MR6.json", "taxon_id": "10090", "uniprot_accession": "Q99MR6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/mrna-cap-binding-complex-binding-go0140262.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140262", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/mrna-cap-binding-complex-binding-go0140262.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serrate-ars2-c-terminal-ipr007042.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007042", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serrate-ars2-c-terminal-ipr007042.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serrate-ars2-n-terminal-ipr021933.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021933", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serrate-ars2-n-terminal-ipr021933.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/serrate-ars2-n-pf12066.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12066", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/serrate-ars2-n-pf12066.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ars2-pf04959.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04959", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ars2-pf04959.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9BXP5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04959", "PF12066", "PF28978" ], "protein_name": "Serrate RNA effector molecule homolog", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sox-7-17-18-central-domain-ipr033392.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/sox-c-terminal-ipr021934.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021934", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sox-c-terminal-ipr021934.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sox17-18-mid-pf12067.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12067", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sox17-18-mid-pf12067.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/sox-c.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51516", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/sox-c.yaml" } ], "pfam_ids": [ "PF00505", "PF12067" ], "protein_name": "Transcription factor SOX-17", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSPDAGYASDDQSQTQSALPAVMAGLGPCPWAESLSPIGDMKVKGEAPANSGAPAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAAALGPEGGRVAMDGLGLQFPEQGFPAGPPLLPPHMGGHYRDCQSLGAPPLDGYPLPTPDTSPLDGVDPDPAFFAAPMPGDCPAAGTYSYAQVSDYAGPPEPPAGPMHPRLGPEPAGPSIPGLLAPPSALHVYYGAMGSPGAGGGRGFQMQPQHQHQHQHQHHPPGPGQPSPPPEALPCRDGTDPSQPAELLGEVDRTEFEQYLHFVCKPEMGLPYQGHDSGVNLPDSHGAISSVVSDASSAVYYCNYPDV", "sequence_length": 414, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bbb211342e305324644fb32133e14c275932c4eccfad6b2ad9e1dfee1dc040b8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H6I2.json", "taxon_id": "9606", "uniprot_accession": "Q9H6I2", "uniprot_release": "2026_03" } ], "pfam_id": "PF12067", "short_name": "Sox17_18_mid", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ph-rbd-pf12068.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12068", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ph-rbd-pf12068.yaml" } ], "pfam_ids": [ "PF00566", "PF02759", "PF12068" ], "protein_name": "Rab GTPase-activating protein tbc-8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQMFRHSSADMWRAKKPTLERRSTDGRRSSIVDWINGLSDNNNYKSDHWVEKHDEGCERMTRNGSVCAVEESEPDVPTQHREVLLTKLKIEIKNIMAEHGAKKYLNLNSPYVTSLCIAVDACIMDGLRRRLLTLFNSPSSMSLLQIIAKSNGPAQQVLDQTREIEELRTSAIPVHLIWIREALYLKSLSTIINHFIDSKSVRRYYDNSALLLDPVKGRLVATLMMAPCMVTYRRMSNRIEQEATAEELVEGATRGSTSTVPSRPPLSITRQVSSIAASVERNGSVSRDYVFSLHHSCKSTLLYGKNNVCVAMNGSDFAKGYMSLQKFYDGNLSLKWVPNQLMHASSQPSSGHSNNGEFTNIWKNTINIEMQDIIYIHLHQKDEISPTCLTFVNCEGVQSAPFQLPAGQHSIAFLSSLETGLAPLLRLDPPLWVGTTKEKILPRLRKRSTAVANPAMLDYVFRLVRTSGVEPAPEDIEDPLAPTSHSPPIHDNCVSLPNSPYIVDNVDSIVNFQIGTACQSMRNQIMARAFYGWLTYVRHLRTIRTHLLHLVDTKTLICDDDCDPVDEKFWKQARAEPTEENEKEFLKRVYWRGIEGINTKEVRRMAWPYLLGLFEWNESPESRLEQFTSQYWQDIEEWRVLEAEVRRRDEEAFRAARARKAASPVREESCDVFEDPNEPTCSQHYDRENLITLFRANLHRIDKDVERCDRNLMFFSNKDNLESLRRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQRGKFPQRPGMSKCLLNLRSLIQVVDPQIYALISDIDYAQALSFAFRWFLLDFKRELSYECTYKVWEVIWAAQRLRITDDFAIFFGLATITNYHDVLITNNFDYTDMIKFFNEMAERHDCSRLLSSARTHVKCLQNLVQHLK", "sequence_length": 913, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8c6908a33004207bbf708f2e879419c2cd2ba833183defcdcef38866b2f5e422", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/I2HAA0.json", "taxon_id": "6239", "uniprot_accession": "I2HAA0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ph-rbd-pf12068.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12068", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ph-rbd-pf12068.yaml" } ], "pfam_ids": [ "PF00566", "PF02759", "PF12068" ], "protein_name": "Small G protein signaling modulator 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSAEDAVKEKLLWNVKKEVKQIMEEAVTRKFVHEDSSHIIALCGAVEACLLHQLRRRAAGFLRSDKMAALFTKVGKTCPVAGEICHKVQELQQQAEGRKPSGVSQEALRRQGSASGKAPALSPQALKHVWVRTALIEKVLDKVVQYLAENCSKYYEKEALLADPVFGPILASLLVGPCALEYTKLKTADHYWTDPSADELVQRHRIRGPPTRQDSPAKRPALGIRKRHSSGSASEDRLAACARECVESLHQNSRTRLLYGKNHVLVQPKEDMEAVPGYLSLHQSAESLTLKWTPNQLMNGTLGDSELEKSVYWDYALVVPFSQVVCIHCHQQKSGGTLVLVSQDGIQRPPLHFPQGGHLLSFLSCLENGLLPRGQLEPPLWTQQGKGKVFPKLRKRSSIRSVDMEEMGTGRATDYVFRIIYPGHRHEHNAGDMIEMQGFGPSLPAWHLEPLCSQGSSCLSCSSSSSPHATPSHCSCIPDRLPLRLLCESMKRQIVSRAFYGWLAHCRHLSTVRTHLSALVHHSVIPPDRPPGASAGLTKDVWSKYQKDKKNYKELELLRQVYYGGIEHEIRKDVWPFLLGHYKFGMSKKEMEQVDAVVAARYQQVLAEWKACEVVVRQREREAHPATRTKFSSGSSIDSHVQRLIHRDSTISNDVFISVDDLEPPEPQDPEDSRPKPEQEAGPGTPGTAVVEQQHSVEFDSPDSGLPSSRNYSVASGIQSSLDEGQSVGFEEEDGGGEEGSSGPGPAAHTLREPQDPSQEKPQAGELEAGEELAAVCAAAYTIELLDTVALNLHRIDKDVQRCDRNYWYFTPPNLERLRDVMCSYVWEHLDVGYVQGMCDLLAPLLVTLDNDQLAYSCFSHLMKRMSQNFPNGGAMDTHFANMRSLIQILDSELFELMHQNGDYTHFYFCYRWFLLDFKRELLYEDVFAVWEVIWAARHISSEHFVLFIALALVEAYREIIRDNNMDFTDIIKFFNERAEHHDAQEILRIARDLVHKVQMLIENK", "sequence_length": 1006, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2778b7e9fd9f155550e52b2d8e354cac708b5240321f89dda808d9d01d190f44", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/O43147.json", "taxon_id": "9606", "uniprot_accession": "O43147", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ph-rbd-pf12068.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12068", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ph-rbd-pf12068.yaml" } ], "pfam_ids": [ "PF00566", "PF02759", "PF12068" ], "protein_name": "Small G protein signaling modulator 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASAPAEAETRQRLLRTVKKEVKQIMEEAVTRKFVHEDSSHIISFCAAVEACVLHGLRRRAAGFLRSNKIAALFMKVGKNFPPAEDLSRKVQDLEQLIESARNQIQGLQENVRKLPKLPNLSPLAIKHLWIRTALFEKVLDKIVHYLVENSSKYYEKEALLMDPVDGPILASLLVGPCALEYTKMKTADHFWTDPSADELVQRHRIHSSHVRQDSPTKRPALCIQKRHSSGSMDDRPSLSARDYVESLHQNSRATLLYGKNNVLVQPRDDMEAVPGYLSLHQTADVMTLKWTPNQLMNGSVGDLDYEKSVYWDYAMTIRLEEIVYLHCHQQVDSGGTVVLVSQDGIQRPPFRFPKGGHLLQFLSCLENGLLPHGQLDPPLWSQRGKGKVFPKLRKRSPQGSAESTSSDKDDDEATDYVFRIIYPGMQSEFVAPDFLGSTSSVSVGPAWMMVPAGRSMLVVARGSQWEPARWDTTLPTPSPKEQPPMPQDLMDVSVSNLPSLWQPSPRKSSCSSCSQSGSADGSSTNGCNHERAPLKLLCDNMKYQILSRAFYGWLAYCRHLSTVRTHLSALVNHMIVSPDLPCDAGQGLTARIWEQYLHDSTSYEEQELLRLIYYGGIQPEIRKAVWPFLLGHYQFGMTETERKEVDEQIHACYAQTMAEWLGCEAIVRQRERESHAAALAKCSSGASLDSHLHRMLHRDSTISNESSQSCSSGRQNIRLHSDSSSSTQVFESVDEVEQVEAEGRLEEKQPKIPNGNLVNGTCSPDSGHPSSHNFSSGLSEHSEPSLSTEDSVLDAQRNTPTVLRPRDGSVDDRQSSEATTSQDEAPREELAVQDSLESDLLANESMDEFMSITGSLDMALPEKDDVVMEGWRSSETEKHGQADSEDNLSEEPEMESLFPALASLAVTTSANEVSPVSSSGVTYSPELLDLYTVNLHRIEKDVQRCDRNYWYFTPANLEKLRNIMCSYIWQHIEIGYVQGMCDLLAPLLVILDDEALAFSCFTELMKRMNQNFPHGGAMDTHFANMRSLIQILDSELFELMHQNGDYTHFYFCYRWFLLDFKRELVYDDVFLVWETIWAAKHVSSAHYVLFIALALVEVYRDIILENNMDFTDIIKFFNEMAERHNTKQVLKLARDLVYKVQTLIENK", "sequence_length": 1148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b93e971555b438b60ffb6ff775ede0307f67bafe2aa18ccc598c6699d70447be", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q2NKQ1.json", "taxon_id": "9606", "uniprot_accession": "Q2NKQ1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ph-rbd-pf12068.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12068", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ph-rbd-pf12068.yaml" } ], "pfam_ids": [ "PF00566", "PF02759", "PF12068" ], "protein_name": "Small G protein signaling modulator 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASVPAEAETRQRLLRTVKKEVKQIMEEAVTRKFVHEDSSHIISFCAAVEACVLHGLRRRAAGFLRSNKIAALFMKVGKGFPPAEELSRKVQELEQLIESARNQIQGLQENVRKLPKLPNLSPLAIKHLWIRTALFGRVLDKIVHYLVENSSKYYEKEALLMDPVDGPILASLLVGPCALEYTKMKTADHFWTDPSADELVQRHRIHSSHLRQDSPTKRPALCIQKRHSSGSMDDRPSISARDYVESLHQDSRATLLYGKNNVLVQPRDDMEAVPGYLSLHQTADVMTLKWTPNQLMNGSVGDLDYEKSVYWDYAVTIRLEEIVYLHCHQQVDSGGTVVLVSQDGIQRPPFRFPKGGHLLQFLSCLENGLLPHGQLDPPLWSQRGKGKVFPKLRKRSPQGSSESTSSDKEDDEATDYVFRIIYPGTQSEFVPQDLMDVSMNNLPPLWQPSPRKSSCSSCSQSGSADGGSTNGCNHERAPLKLLCDNMKYQILSRAFYGWLAYCRHLSTVRTHLSALVNHMIVSPDLPCDAGQGLTASIWEKYIQDSTTYPEQELLRLIYYGGVQPEIRRAVWPFLLGHYQFGMTEMERKEVDEQIHACYAQTMSEWLGCEAIVRQRERESHAAALAKCSSGASLDSHLHRMLHRDSTISNESSQSCSSGRQNLRLQSDSSSSTQVFESVDEVEQTEAEGRSEEKHPKIPNGNPANGTCSPDSGHPSSHNFSSGLSEHSEPSLSTEDSVLDAQRSLPAVFRPGDSSVEDGQSSEATTSRDEAPREELAVQDSLESDLLANESLEEFMSIPGSLDVALPEKDGAVMDGWPGEADKPSRADSEDNLSEEPEMESLFPALASLAVTSSANNEASPVSSSGVTYSPELLDLYTVNLHRIEKDVQRCDRSYWYFTAANLEKLRNIMCSYIWQHIEIGYVQGMCDLLAPLLVILDDEALAFSCFTELMKRMNQNFPHGGAMDTHFANMRSLIQILDSELFELMHQNGDYTHFYFCYRWFLLDFKRELVYDDVFSVWETIWAAKHVSSAHYVLFIALALVEVYRDIILENNMDFTDIIKFFNEMAERHNAKQILQLARDLVHKVQILIENK", "sequence_length": 1093, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fcf02bf9dfb3b542a758c9777dd8b9faad407a62795e9c4bdf93497fcbf4a95b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BPQ7.json", "taxon_id": "10090", "uniprot_accession": "Q8BPQ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/small-g-protein-signalling-modulator-1-2-rab-binding-domain-ipr021935.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021935", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/small-g-protein-signalling-modulator-1-2-rab-binding-domain-ipr021935.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ph-rbd-pf12068.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12068", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ph-rbd-pf12068.yaml" } ], "pfam_ids": [ "PF00566", "PF12068" ], "protein_name": "TBC1 domain family member 17", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGSSYRVVFEKGGVYLHTSARKHQDPDSLIAGVIRVVEKDSDVFLHWAPVEEAGDPTQILFKKDPSRGEPSTSEEEPTFDPGYEPDWAVISTVRPQPHLAEPRKGAEPSSSRSSWAFSVSLGELKSIRRSKPGLSWAYLVLVTQAGGSLPALHFHRGGTRALLRVLSRYLLLASSPQDSRLYLVFPQDPSALSDSFHHLQLFDQDSSNVVSRFLQDPYSTTFSSFSRVTNFFRGALQPHPEGASSPNLPPLPDDEPEPGFEVISCVELGQRPTVERAPPVTEEEWNRYVGPEGRLQNVPELKNRIFSGGLSPGLRREAWKFLLGYLSWESSAEEHKAHVRKKTDEYFRMKLQWKSVSAEQERRNSLLHGYRSLIERDVSRTDRTNKFYEGPENPGLSLLHDILLTYCMYHFDLGYVQGMSDLLSPILFVVQNEVDAFWCFCGFMELVHGNFEESQETMKRQLGQLLLLLRVLDQPLCDFLDSQDSGSLCFCFRWLLIWFKREFPFPDVLRLWEVLWTGLPGPNLHLLVACAILDMERDTLMLSGFGSNEILKHINELTMKLSVEDVLTRAEALYRQLTACPELPHNVQEILGLAQPEEPSSPSPPVSPMPLSPTRAPLPPPLPEEVIPQPDSSLEILPEDEDGA", "sequence_length": 645, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5d3769f4ace4e9a71199a0791c2ac8287c0eb434baf680906913c378d3144770", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BYH7.json", "taxon_id": "10090", "uniprot_accession": "Q8BYH7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/small-g-protein-signalling-modulator-1-2-rab-binding-domain-ipr021935.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021935", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/small-g-protein-signalling-modulator-1-2-rab-binding-domain-ipr021935.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ph-rbd-pf12068.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12068", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ph-rbd-pf12068.yaml" } ], "pfam_ids": [ "PF00566", "PF12068" ], "protein_name": "TBC1 domain family member 15", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAGVVSGKIIYEQEGVYIHSSCGKTNDQDGLISGILRVLEKDAEVIVDWRPLDDALDSSSILYARKDSSSVVEWTQAPKERGHRGSEHLNSYEAEWDMVNTVSFKRKPHTNGDAPSHRNGKSKWSFLFSLTDLKSIKQNKEGMGWSYLVFCLKDDVVLPALHFHQGDSKLLIESLEKYVVLCESPQDKRTLLVNCQNKSLSQSFENLLDEPAYGLIQAGLLDRRKLLWAIHHWKKIKKDPYTATMIGFSKVTNYIFDSLRGSDPSTHQRPPSEMADFLSDAIPGLKINQQEEPGFEVITRIDLGERPVVQRREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEERTQLQKQKTDEYFRMKLQWKSISQEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCTNFHLLLCCAILESEKQQIMEKHYGFNEILKHINELSMKIDVEDILCKAEAISLQMVKCKELPQAVCEILGLQGSEVTTPDSDVGEDENVVMTPCPTSAFQSNALPTLSASGARNDSPTQIPVSSDVCRLTPA", "sequence_length": 691, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c1ef5481a5168f06dff1895eabfff5344ce49432f81437296176769924b02d7d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TC07.json", "taxon_id": "9606", "uniprot_accession": "Q8TC07", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/small-g-protein-signalling-modulator-1-2-rab-binding-domain-ipr021935.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021935", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/small-g-protein-signalling-modulator-1-2-rab-binding-domain-ipr021935.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ph-rbd-pf12068.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12068", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ph-rbd-pf12068.yaml" } ], "pfam_ids": [ "PF00566", "PF12068" ], "protein_name": "TBC1 domain family member 15", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAGVVSGKIIYEQEGVYIHSSCGKANDQDSLISGILRVLEKDAEVIVDWRPLDDALDSSSILCAGKDSSSVVEWTQAPKERAHRGSDQQSSYEAEWDMVTTVSFKKKPHTNGDAPGHRNGKSKWSFLFSLADLKSVKQSKEGMGWSYLVFCLKDDVMLPALHFHQGDSKLLIESLEKYVVLCESPQDSRTLLVNCQNKSLSQSFENLLDEPAYGLIQKIKKDPYTATMVGFSKVTNYIFDSLRGSDPSTHQRPPSEMADFLSDAIPGLKINQQEEPGFEVITRIDLGERPVVQRREPVSLEEWNKSLDPEGRLVAVESMKQKIFRGGLSHSLRKQAWKFLLGYFPWDSTKEERTQLQKQKTDEYFRMKLQWKSVSEAQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCKNFHLLLCCAILESEKQQIMAKHYGFNEILKHINELSMKIDVEDILCKAEAISLQMAQCKELPQAVCEILGLQDSEITTPDSDTDENVGSPCPVSAFPSSTLPILAASEAKDDSPTQTLASPNACRLTPA", "sequence_length": 671, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3335821617e44552b3f64aee8c71c35d23001113c5e055fd852068ef505afa5d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CXF4.json", "taxon_id": "10090", "uniprot_accession": "Q9CXF4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/small-g-protein-signalling-modulator-1-2-rab-binding-domain-ipr021935.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021935", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/small-g-protein-signalling-modulator-1-2-rab-binding-domain-ipr021935.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ph-rbd-pf12068.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12068", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ph-rbd-pf12068.yaml" } ], "pfam_ids": [ "PF00566", "PF12068" ], "protein_name": "TBC1 domain family member 17", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGAGYRVVFEKGGVYLHTSAKKYQDRDSLIAGVIRVVEKDNDVLLHWAPVEEAGDSTQILFSKKDSSGGDSCASEEEPTFDPGYEPDWAVISTVRPQLCHSEPTRGAEPSCPQGSWAFSVSLGELKSIRRSKPGLSWAYLVLVTQAGGSLPALHFHRGGTRALLRVLSRYLLLASSPQDSRLYLVFPHDSSALSNSFHHLQLFDQDSSNVVSRFLQDPYSTTFSSFSRVTNFFRGALQPQPEGAASDLPPPPDDEPEPGFEVISCVELGPRPTVERGPPVTEEEWARHVGPEGRLQQVPELKNRIFSGGLSPSLRREAWKFLLGYLSWEGTAEEHKAHIRKKTDEYFRMKLQWKSVSPEQERRNSLLHGYRSLIERDVSRTDRTNKFYEGPENPGLGLLNDILLTYCMYHFDLGYVQGMSDLLSPILYVIQNEVDAFWCFCGFMELVQGNFEESQETMKRQLGRLLLLLRVLDPLLCDFLDSQDSGSLCFCFRWLLIWFKREFPFPDVLRLWEVLWTGLPGPNLHLLVACAILDMERDTLMLSGFGSNEILKHINELTMKLSVEDVLTRAEALHRQLTACPELPHNVQEILGLAPPAEPHSPSPTASPLPLSPTRAPPTPPPSTDTAPQPDSSLEILPEEEDEGADS", "sequence_length": 648, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "41015138105d85f8fb047608c947503a06fbc48460a53eec82d9401ad3a5c6ef", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HA65.json", "taxon_id": "9606", "uniprot_accession": "Q9HA65", "uniprot_release": "2026_03" } ], "pfam_id": "PF12068", "short_name": "PH_RBD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12069", "short_name": "DUF3549", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/scai-pf12070.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12070", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/scai-pf12070.yaml" } ], "pfam_ids": [ "PF12070" ], "protein_name": "Protein SCAI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVRGARQSQQPRSRLAPRLSGTVEKPPRKRKSRTEFTLKETMSSGGAEDDIPQGERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGIQEPADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDGEGPYDFGGVLTNSNRDIINGDAIHKRNQSHKEMHCLHPGDLYPFTRKPLFIVVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLLLTRFVFCSATMRMHKAFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNIFFENSMDDY", "sequence_length": 606, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d1928149d94b03fba5359df93e3d3d48b9719f04f979141e2a567d05bb8cd6a6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C8N2.json", "taxon_id": "10090", "uniprot_accession": "Q8C8N2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/scai-pf12070.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12070", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/scai-pf12070.yaml" } ], "pfam_ids": [ "PF12070" ], "protein_name": "Protein SCAI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRSRTEFALKEIMSSGGAEDDIPQGERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAIHKRNQSHKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFFENTIDDY", "sequence_length": 606, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4a702a86027a3e71d9df67f31d7d72596a006b0ae5cdcb4d28e8ebbcfe1d0d3c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N9R8.json", "taxon_id": "9606", "uniprot_accession": "Q8N9R8", "uniprot_release": "2026_03" } ], "pfam_id": "PF12070", "short_name": "SCAI", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12071", "short_name": "DUF3551", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salinispora arenicola (strain CNS-205)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rnase-y-n-pf12072.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12072", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rnase-y-n-pf12072.yaml" } ], "pfam_ids": [ "PF00013", "PF01966", "PF12072" ], "protein_name": "Ribonuclease Y", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGFDAVLLVAVLLLALIVLGAVLVGVRAVRGIAGAPRPEDPAFIAEKDRQEQSLAALRSAADEANSTVDAAKSAAAAARTEAAAARAEAKAARAEARRVLDGARAEADTILERVHKQAEADAEQLRTAARRSGEREAAVLATTTREQAAEVERRAARMDDRERLHSEEVERLAERDRQLSAASAALAARESTLVDRDRELAQAEDRRRRELERVAGITAEAARGELVEAIEAQAKREAALLVREIESEARNTGEERARHIVVDAIQRVASEQTAESVVSVLHLPGDEMKGRIIGREGRNIRAFESVTGVNLIIDDTPEAVLLSCFDPVRREVGRLTLEKLVLDGRIHPHRIEEVHDLARQEVVQLCQRAAEDALVEVGITEIHPELVSLLGRLRYRTSYGQNVLKHLVETAHIAGIMAAELRLDVPTIKRCAFLHDIGKALTHEVEGSHAIVGADVARKYGESEDVVHAIEAHHNEVPPQTIEAVLTQASDACSGGRPGARRESLEAYVRRLERIEEIAAGKLGVERVFAMQAGREVRVMVRPEDVDDISASVLARDVAKQIEEELTYPGQIRVTVVRESRVTEIAR", "sequence_length": 588, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95d46dc9b5b800670f4034020312043062061385f76a4f3537e5a56b273f5558", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8M7V7.json", "taxon_id": "391037", "uniprot_accession": "A8M7V7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rnase-y-n-pf12072.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12072", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rnase-y-n-pf12072.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O31774", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00013", "PF01966", "PF12072" ], "protein_name": "Ribonuclease Y", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "fb9890a94ea0412d6908b17bfde7fff076cbec995c0d395b1606658008d719c5", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTPIMMVLISILLILLGLVVGYFVRKTIAEAKIAGARGAAEQILEDAKRDAEALKKEALLEAKDEIHKLRIDAEQEVRERRNELQKQENRLLQKEENLDRKHEGIDKREAMLEKKDHSLNERQQHIEEMESKVDEMIRMQQSELERISSLTRDEAKQIILERVENELSHDIAIMTKETENRAKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTGIDLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVEKSRREVDDYIREMGEQTTFEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAFLAGLMASELGEDAKLAKRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVINSIASHHGDEEPTSIIAVLVAAADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSFAIQAGREVRIMVKPDSINDLEAHRLARDIRKRIEDELDYPGHIKVTVIRETRAVEYAK", "sequence_length": 520, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "fb9890a94ea0412d6908b17bfde7fff076cbec995c0d395b1606658008d719c5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31774.json", "taxon_id": "224308", "uniprot_accession": "O31774", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain NCTC 8325 / PS 47)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rnase-y-n-pf12072.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12072", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rnase-y-n-pf12072.yaml" } ], "pfam_ids": [ "PF00013", "PF01966", "PF12072" ], "protein_name": "Ribonuclease Y", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLLSLLLILLGIILGVVGGYVVARNLLLQKQSQARQTAEDIVNQAHKEADNIKKEKLLEAKEENQILREQTEAELRERRSELQRQETRLLQKEENLERKSDLLDKKDEILEQKESKIEEKQQQVDAKESSVQTLIMKHEQELERISGLTQEEAINEQLQRVEEELSQDIAVLVKEKEKEAKEKVDKTAKELLATAVQRLAADHTSESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTGIDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEDMVEKARKEVDDIIREAGEQATFEVNAHNMHPDLVKIVGRLNYRTSYGQNVLKHSIEVAHLASMLAAELGEDETLAKRAGLLHDVGKAIDHEVEGSHVEIGVELAKKYGENETVINAIHSHHGDVEPTSIISILVAAADALSAARPGARKETLENYIRRLERLETLSESYDGVEKAFAIQAGREIRVIVSPEEIDDLKSYRLARDIKNQIEDELQYPGHIKVTVVRETRAVEYAK", "sequence_length": 519, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "533862064a703bbb0674d83c0cc87b8d27514602a1beab69dfc9b52ce0a257e3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2FZ08.json", "taxon_id": "93061", "uniprot_accession": "Q2FZ08", "uniprot_release": "2026_03" } ], "pfam_id": "PF12072", "short_name": "RNase_Y_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, 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"MSVEEPGIEAHGHKDRMLYAMLLSKDTSLAFLGSKKIMIDILQHICRTQDIDEESAIAALEDIFETLPRNLSRDARKQIEITINHLVSRLPSIVLPFLVRRLTTIAGRLDRFRSTVSVSFDCLNWVNSMIPNLPEKELQYWILELLPLQSSFLSYALRDGKPSVADSAIKSTRRCYRSLFCKKMDSLKKLVSFLLTETENAILPPKSLPLYGVIISTCYYFHQSPNPRNEISQQAELFSKIMAQNVLMAKPALEKYLYHEFCYSLGLLLSVDQLKLYLLPSIEKALLRSPEIIFSGILSSLAHGFADSKVDASSLILSSVLTSFVNGLKSSNAEVRRNCFQTFKDLSANASDNESLSRVASELITSLRTGKVTASDQRVLFVDALSSLSLKHIDASMLLNELLPLFTKAKESDFNSLASLIVKTLKFLLMNGRNPGDKIYDFLSKSLQRPVAHESMFWLTSLATMAWDLPASDDVQIEFINFFLNNLSILTEKALMSVSGATQNGTYLAPIIYLSFGVNKLSVWNSERISHTLELQDILVKLSTPKNNDVFIFSSKITNKLNDDQSKLWYFQGLCDFAKVSDNLLFSNFVERWFQSVIGVFSFASRENSNRALKILKSAILYRPHLRMSICSQLWNYHADFEKSKSVGKFDSAKYDEISSLFQSLILSSMSADTSNFSNQELVDFDKYLVELLFLSFAFKDKFDWIRFCQVSKRDPATLVSERIHSIIEEIELLLSSAIKDSKETAAIASISMIVFVAPEESIPLFVNVFRNQLLHLNISSVSSTDLEIWKTPEGVLWDNVLEKKSSKKLDKNTKDYETKRWEAEVRAKQSAKKPAKLSKDQQALVDAQLDAEAKIRSRVNLIALSLERGLGIIRSLGEAVQLAPALWVEDAIDVLLFHNVLKYSEPFLKNLAYDTFLLTLKASGFSERLGDRSYSSSLASILAHTFSVNSSENIKELTKSILYKLRFAIEQNYFEPQMFACIFPLLYDLTFNITNSDEEDEAELQLLVTEILEFQALYSASLRRMRSKLIKSLLHLLEIAPTQYQENKNSLLSLCEGLHSTYTDEELNLLLSNLFHPESSIRSAVLQALQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSFFELQIFFTQDSDYLQQIIGKSLIDLLDEFEELGQFIPKELMRTYRENALPSAPEYDEYGIIKKETIGRDLGRIARESVAVSFFHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSKMLEAGKLAIFQSGAHQVEALMELFEQKLNVDSLPTDANDRLREATVVLFGTVAQHLPSNDPRLAVVMDSLLSVLSTPSESVQLAVAVCLPPLVKKSLGKSKEYYELLSNKLMNSTSLADQKGAAYGLAGLVKGYGIKAFQDFNILDSLSELISNRQNATHRQVALFAVEAFSRILGIYFEPYLPDLLPLLLTSFGDNANEVREATMDAVKQIMSQLSAFGVKLLLPTLLDGLNEYNWRSKKASVEILGLMSYMAPKQLSVFLPTIIPKLSEVLTDSHSQVRNTANKSLLRFGDVISNPEIQTLVPTLLKALSDCTRYTDDALEALLKTSFVHYLDPPSLALVIPILKYGLRERNAGTKRQSAKIFGLMASLTEPENLAVYLESLMPRLREVLIDPVPDTRATAAKALGSLIEKLGEKKFPTLIPELFNVLRSECSEVDRQGAAQGLSEILAGLGLARLEDVLPEILKNTSSPVPHIRESFISLLIYLPATFGSRFQPYLARAIPPILSGLADDSELVQTASLRAAKMIVNNYATKSVDLLLPELEKGLFDNAWRIRLSSVQLVGDLVFKLAGINRKALQEDEEEEGTHSDVSRKALLDIIGQERHDRILSTLYIVRQDIAAVVRTPAIQIWKAIVVNTPRTVREILPTLTSIIVSNLNSSSNDRRTMCVKSLGDLLKKAGFDVLPQLLPVLKQGLESANSGDRIGVCIALEELINSATPEQLEIYSDDFVYAVRRALMDGDLEVRETAAEAFDSLQSILGDRAVDDVLPQLLKLLESENQSEQALSALREIISRRSSTIFPVLIPTLIKKPVSAFNARALSSLAQVAGVTLNKRLPSILNALMESSLASTGDDLVALNGAIDKVNLSVKDQEGLQILMAHFYSFSESEDFRKRLFAAEHMLVFFQNCKLDYYRYVGDWVRHFITLFEDKSQDVVVAAVAAQNTLVSALRKDQLDSLVSIAYHSLRDVGSQGVNLPAFEVAQGVNSILPIFLYGLMHGTMDQREQSALGIADIVLKTEPSKLRPFVTQITGPLIRIIGERFPVEVKCAILYTLNIILSKISTFLRPFLPQLQRTFAKCLGDPSSEVIRSRAATALGTLITLQTRLAPIITELVSGARTPDAGVRKAMLNALFAVVSKSGQNMNEASAEAIEQLLDEISAESSEHMVICAKLYGALFSHLPDAQAKQLLESKVLSLEIQSEFSVLILNAAVKFGSQKIIELKLSDIVCSIISTASLQKEVTIAENGILALGKALLADIPQSFGNAKNLVEALKVNIEAPPSTSQDSRRLALLIIRVVSKENYSLIKPHISILAPAIFGCVRAIVIPVKLAAEAAFLALFQLVEDDSVLNKYIETLEGPRARSFVDYSRRVAVKLAAAERDRINSGSERVKLEEVEDLAEINAVGRDNEVSTNDP", "sequence_length": 2670, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6d8c02864e46b134f6ded351e76b0d44dde70973a342bd39fe5d3a7b63f8ecca", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q10105.json", "taxon_id": "284812", "uniprot_accession": "Q10105", "uniprot_release": "2026_03" } ], "pfam_id": "PF12074", "short_name": "Gcn1_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12077", "short_name": "DUF3556", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12078", "short_name": "DUF3557", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3558-pf12079.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12079", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3558-pf12079.yaml" } ], "pfam_ids": [ "PF12079" ], "protein_name": "Putative lipoprotein LprB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQSIANSK", "sequence_length": 185, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "02c2eae1b50aad8bae243abc51de80316adf1dd74fa9486348efc7f94c6bb5d7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WK52.json", "taxon_id": "83331", "uniprot_accession": "P9WK52", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3558-pf12079.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12079", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3558-pf12079.yaml" } ], "pfam_ids": [ "PF12079" ], "protein_name": "Putative lipoprotein LprB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQSIANSK", "sequence_length": 185, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "02c2eae1b50aad8bae243abc51de80316adf1dd74fa9486348efc7f94c6bb5d7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WK53.json", "taxon_id": "83332", "uniprot_accession": "P9WK53", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3558-pf12079.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12079", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3558-pf12079.yaml" } ], "pfam_ids": [ "PF12079" ], "protein_name": "Putative lipoprotein LprB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPPPCDIAKELTRQSIANSK", "sequence_length": 185, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d8047ae855d3553cb14a112a45b5585cec6543d211f0fc5881ff968bb563d264", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7U093.json", "taxon_id": "233413", "uniprot_accession": "Q7U093", "uniprot_release": "2026_03" } ], "pfam_id": "PF12079", "short_name": "DUF3558", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12083", "short_name": "DUF3560", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/duf3561-family-protein-nf008001.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/duf3561-family-protein-nf008001.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3561-pf12084.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12084", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3561-pf12084.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P46141", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12084" ], "protein_name": "Inner membrane protein YgbE", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "cf1f44dabe7693c8f80dfe865b77c204c62f9bb394124e323c57d6f1275f2f93", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG", "sequence_length": 107, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "cf1f44dabe7693c8f80dfe865b77c204c62f9bb394124e323c57d6f1275f2f93", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P46141.json", "taxon_id": "83333", "uniprot_accession": "P46141", "uniprot_release": "2026_03" } ], "pfam_id": "PF12084", "short_name": "DUF3561", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12085", "short_name": "DUF3562", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12086", "short_name": "DUF3563", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12087", "short_name": "DUF3564", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12088", "short_name": "DUF3565", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium leprae (strain TN)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3566-pf12089.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12089", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3566-pf12089.yaml" } ], "pfam_ids": [ "PF12089", "PF29656" ], "protein_name": "Uncharacterized protein ML0007", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSPNESRAFNAADDLIGDGSVERAGLHRATSVPGESSEGLQRGHSPEPNDSPPWQRGSARASQSGYRPSDPLTTTRQSNPAPGANVRSNRFISGMTAPALSGQLPKKNNSTQALEPVLMSNEVPFTESYASELPDLSGPVQRTVPCKPSPDRGSSTPRMGRLEITKVRGTGEIRSQISRRSHGPVRASMQIRRIDPWSMLKVSLLLSVALFFVWMIAVAFLYLLLGGMGVWAKLNSNVGDLLNNTGGNSGELVSNSTIFGCAVLVGLVNIVLMTTMAAIAAFVYNLSSDLVGGVEVTLADLD", "sequence_length": 303, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4b7ea30c8918ebe07e98cc6644d7421f50a93f168bae9d739aafb845f6d9531b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32870.json", "taxon_id": "272631", "uniprot_accession": "O32870", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3566-pf12089.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12089", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3566-pf12089.yaml" } ], "pfam_ids": [ "PF12089", "PF29656" ], "protein_name": "Uncharacterized protein MT0007", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAPNEPGALSKGDGPNADGLVDRGGAHRAATGPGRIPDAGDPPPWQRAATRQSQAGHRQPPPVSHPEGRPTNPPAAADARLNRFISGASAPVTGPAAAVRTPQPDPDASLGCGDGSPAEAYASELPDLSGPTPRAPQRNPAPARPAEGGAGSRGDSAAGSSGGRSITAESRDARVQLSARRSRGPVRASMQIRRIDPWSTLKVSLLLSVALFFVWMITVAFLYLVLGGMGVWAKLNSNVGDLLNNASGSSAELVSSGTIFGGAFLIGLVNIVLMTALATIGAFVYNLITDLIGGIEVTLADRD", "sequence_length": 304, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": 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"27da03edad1bfb749962bd6d85ab506018dceff998fda602d759d45d41dc6596", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZRF8.json", "taxon_id": "9606", "uniprot_accession": "Q6ZRF8", "uniprot_release": "2026_03" } ], "pfam_id": "PF12126", "short_name": "PML_CC", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12128", "short_name": "DUF3584", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bmerb-dom-pf12130.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12130", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bmerb-dom-pf12130.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fad-binding-3-pf01494.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01494", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fad-binding-3-pf01494.yaml" } ], "pfam_ids": [ "PF00307", "PF00412", "PF01494", "PF12130", "PF25413" ], "protein_name": "[F-actin]-monooxygenase MICAL2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGENEDEKQAQAGQVFENFVQASTCKGTLQAFNILTRHLDLDPLDHRNFYSKLKSKVTTWKAKALWYKLDKRGSHKEYKRGKSCTNTKCLIVGGGPCGLRTAIELAYLGAKVVVVEKRDSFSRNNVLHLWPFTIHDLRGLGAKKFYGKFCAGSIDHISIRQLQLILFKVALMLGVEIHVNVEFVKVLEPPEDQENQKIGWRAEFLPTDHSLSEFEFDVIIGADGRRNTLEGFRRKEFRGKLAIAITANFINRNSTAEAKVEEISGVAFIFNQKFFQDLKEETGIDLENIVYYKDCTHYFVMTAKKQSLLDKGVIINDYIDTEMLLCAENVNQDNLLSYAREAADFATNYQLPSLDFAMNHYGQPDVAMFDFTCMYASENAALVRERQAHQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMVKSWNQGTPPLELLAERESLYRLLPQTTPENINKNFEQYTLDPGTRYPNLNSHCVRPHQVKHLYITKELEHYPLERLGSVRRSVNLSRKESDIRPSKLLTWCQQQTEGYQHVNVTDLTTSWRSGLALCAIIHRFRPELINFDSLNEDDAVENNQLAFDVAEREFGIPPVTTGKEMASAQEPDKLSMVMYLSKFYELFRGTPLRPVDSWRKNYGENADLSLAKSSISNNYLNLTFPRKRTPRVDGQTGENDMNKRRRKGFTNLDEPSNFSSRSLGSNQECGSSKEGGNQNKVKSMANQLLAKFEESTRNPSLMKQERRVSGIGKPVLCSSSGPPVHSCCPKPEEATPSPSPPLKRQFPSVVVTGHVLRELKQVSAGSECLSRPWRARAKSDLQLGGTENFATLPSTRPRAQALSGVLWRLQQVEEKILQKRAQNLANREFHTKNIKEKAAHLASMFGHGDFPQNKLLSKGLSHTHPPSPPSRLPSPDPAASSSPSTVDSASPARKEKKSPSGFHFHPSHLRTVHPQLTVGKVSSGIGAAAEVLVNLYMNDHRPKAQATSPDLESMRKSFPLNLGGSDTCYFCKKRVYVMERLSAEGHFFHRECFRCSICATTLRLAAYTFDCDEGKFYCKPHFIHCKTNSKQRKRRAELKQQREEEATWQEQEAPRRDTPTESSCAVAAIGTLEGSPPDEPTSPKRPKSISEPQHSDAEGDAASPLPSEWTSVRISPGEEAAGQDVLAVRVLVTSEDSSSDTESDYGGSEGSHTEPCEEKPWRPGSPHLPHTSLGEALSRAVSPQCPEEPRAVHAALQRANSFQSPTPSKYQNWRREFWWSLTPVNKRTMSPPKDPSPSLPLPSSSSHSSSPPSSSSTSVSGNAPDGSSPPQMTASEPLSQVSRGHPSPPTPNFRRRAVAQGAPREIPLYLPHHPKPEWAEYCLVSPGEDGLSDPAEMTSDECQPAEAPLGDIGSNHRDPHPIWGKDRSWTGQELSPLAGEDREKGSTGARKEEEGGPVLVKEKLGLKKLVLTQEQKTMLLDWNDSIPESVHLKAGERISQKSAENGRGGRVLKPVRPLLLPRAAGEPLPTQRGAQEKMGTPAEQAQGERNVPPPKSPLRLIANAIRRSLEPLLSNSEGGKKAWAKQESKTLPAQACTRSFSLRKTNSNKDGDQHSPGRNQSSAFSPPDPALRTHSLPNRPSKVFPALRSPPCSKIEDVPTLLEKVSLQENFPDASKPPKKRISLFSSLRLKDKSFESFLQESRQRKDIRDLFGSPKRKVLPEDSAQALEKLLQPFKSTSLRQAAPPPPPPPPPPPPPPTAGGADSKNFPLRAQVTEASSSASSTSSSSADEEFDPQLSLQLKEKKTLRRRKKLEKAMKQLVKQEELKRLYKAQAIQRQLEEVEERQRASEIQGVRLEKALRGEADSGTQDEAQLLQEWFKLVLEKNKLMRYESELLIMAQELELEDHQSRLEQKLREKMLKEESQKDEKDLNEEQEVFTELMQVIEQRDKLVDSLEEQRIREKAEDQHFESFVFSRGCQLSRT", "sequence_length": 1957, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ca4ddb04fef2dea87868106ae8fe26ef3ad7fa8f97381f807dfd1591023fc12a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O94851.json", "taxon_id": "9606", "uniprot_accession": "O94851", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/calponin-homology-ch-domain-found-in-eh-domain-binding-protein-1-and-s-cd21254.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd21254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/calponin-homology-ch-domain-found-in-eh-domain-binding-protein-1-and-s-cd21254.yaml" } ], "pfam_ids": [ "PF00307", "PF10358", "PF12130" ], "protein_name": "EH domain-binding protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEDDDENRVNQEEKAAKITEIVNQLNALSSLDEDQDDCIKQANVPSAKSASSSEELINTLNFLDEAQKDLATVNTNPFDEPDVTELNPFGDPDSEEPITETTSPKKPEESFYNNSCNPFKGVQTPQYLNPFDEPETFVMIKDSPPQSTRRKNLRPVDMSKYLYADSSKSEEELDESNPFYEPKPTSPNNLVNTVQEGETERRVKRRAPAPPAPLAPPAPPAPPALTPKTGVNENTVVSAGKDLSTSPKPSPIPSPVLGQKPNASQSLLAWCREVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPEPHQPARGAVDLLSQDDSVFVTDSGVGESESEHQTPDDHLSPSTASPYYRRTKSDTEPQKSQQSSARTSGSDDPGLSSSTDSAQALASLGKKRLKAENLELSDLCVSDKKKDVSPLSAYEQKLQTVHASSDMEQGKMEKSRSLECRLDGELAITKPNVSSPSKLGYNRDTDFTKKPCASLRQIESDPDADKSTLNHADHPNKAVQHRMLSRQEELKERARVLLEQARRDAAFKVGSKHGGSAAPALCSRQLNDQQDEERRRQLRERARQLIAEARCGVKMSELPSYGEMAAEKLKERSKASGDENDNIEIDTNEEIPEGFVVGGGDELTNIESDLDNPEQNSKVVDLRLKKLLEAQPQVANLLPSAAQKAVTEASEQGEKSGVEDLRTERLQKATERFRNPVVFNKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKRGTEEKAEITETQRKPSEDEKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCALQ", "sequence_length": 1231, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a3c4d9afbe3de3d66ca537aa2ccdca041bb5b3c09bf38678fadde6c888763742", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q69ZW3.json", "taxon_id": "10090", "uniprot_accession": "Q69ZW3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/calponin-homology-ch-domain-found-in-eh-domain-binding-protein-1-like--cd21255.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd21255", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/calponin-homology-ch-domain-found-in-eh-domain-binding-protein-1-like--cd21255.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bmerb-dom-pf12130.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12130", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bmerb-dom-pf12130.yaml" } ], "pfam_ids": [ "PF00307", "PF10358", "PF12130" ], "protein_name": "EH domain-binding protein 1-like protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKVLATAEVDLARHAGPVPVQVPVRLRLKPKSVKVVQAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEAHGPGAPEARARVPQPDPSRELKTLCEEEEEGQGRPQQAVASPSNAEDTSPAPVSAPAPPARTSRGQGSERANEAGGQVGPEAPRPPETSPEMRSSRQPAQDTAPTPAPRLRKGSDALRPPVPQGEDEVPKASGAPPAGLGSARETQAQACPQEGTEAHGARLGPSIEDKGSGDPFGRQRLKAEEMDTEDRPEASGVDTEPRSGGREANTKRSGVRAGEAEESSAVCQVDAEQRSKVRHVDTKGPEATGVMPEARCRGTPEAPPRGSQGRLGVRTRDEAPSGLSLPPAEPAGHSGQLGDLEGARAAAGQEREGAEVRGGAPGIEGTGLEQGPSVGAISTRPQVSSWQGALLSTAQGAISRGLGGWEAEAGGSGDLETETEVVGLEVLGTQEKEVEGSGFPETRTLEIEILGALEKEAARSRVLESEVAGTAQCEGLETQETEVGVIETPGTETEVLGTQKTEAGGSGVLQTRTTIAETEVLVTQEISGDLGPLKIEDTIQSEMLGTQETEVEASRVPESEAEGTEAKILGTQEITARDSGVREIEAEIAESDILVAQEIEVGLLGVLGIETGAAEGAILGTQEIASRDSGVPGLEADTTGIQVKEVGGSEVPEIATGTAETEILGTQEIASRSSGVPGLESEVAGAQETEVGGSGISGPEAGMAEARVLMTRKTEIIVPEAEKEEAQTSGVQEAETRVGSALKYEALRAPVTQPRVLGSQEAKAEISGVQGSETQVLRVQEAEAGVWGMSEGKSGAWGAQEAEMKVLESPENKSGTFKAQEAEAGVLGNEKGKEAEGSLTEASLPEAQVASGAGAGAPRASSPEKAEEDRRLPGSQAPPALVSSSQSLLEWCQEVTTGYRGVRITNFTTSWRNGLAFCAILHRFYPDKIDYASLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGGGGAGTYRVGSAQPSPPDDLDAGGLAQRLRGHGAEGPQEPKEAADRADGAAPGVASRNAVAGRASKDGGAEAPRESRPAEVPAEGLVNGAGAPGGGGVRLRRPSVNGEPGSVPPPRAHGSFSHVRDADLLKKRRSRLRNSSSFSMDDPDAGAMGAAAAEGQAPDPSPAPGPPTAADSQQPPGGSSPSEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEMQLRSLMESGANKLQEEVLIQEWFTLVNKKNALIRRQDQLQLLMEEQDLERRFELLSRELRAMLAIEDWQKTSAQQHREQLLLEELVSLVNQRDELVRDLDHKERIALEEDERLERGLEQRRRKLSRQLSRRERCVLS", "sequence_length": 1523, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "93d42b5a18a69fab21be703b6a9d2bffea8051d37fbdd63f61b36f61cb2dc9fd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N3D4.json", "taxon_id": "9606", "uniprot_accession": "Q8N3D4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/calponin-homology-ch-domain-found-in-eh-domain-binding-protein-1-and-s-cd21254.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd21254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/calponin-homology-ch-domain-found-in-eh-domain-binding-protein-1-and-s-cd21254.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bmerb-dom-pf12130.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12130", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bmerb-dom-pf12130.yaml" } ], "pfam_ids": [ "PF00307", "PF10358", "PF12130" ], "protein_name": "EH domain-binding protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSAALQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEDDDENRVNQEEKAAKITEIVNQLNALSSLDEDQDDCIKQANMRSAKSASSSEELINKLNFLDEAEKDLATVNSNPFDDPDAAELNPFGDPDSEEPITETASPRKTEDSFYNNSYNPFKEVQTPQYLNPFDEPEAFVTIKDSPPQSTKRKNIRPVDMSKYLYADSSKTEEEELDESNPFYEPKSTPPPNNLVNPVQELETERRVKRKAPAPPVLSPKTGVLNENTVSAGKDLSTSPKPSPIPSPVLGRKPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPELQQPISGAVDFLSQDDSVFVNDSGVGESESEHQTPDDHLSPSTASPYCRRTKSDTEPQKSQQSSGRTSGSDDPGICSNTDSTQAQVLLGKKRLLKAETLELSDLYVSDKKKDMSPPFICEETDEQKLQTLDIGSNLEKEKLENSRSLECRSDPESPIKKTSLSPTSKLGYSYSRDLDLAKKKHASLRQTESDPDADRTTLNHADHSSKIVQHRLLSRQEELKERARVLLEQARRDAALKAGNKHNTNTATPFCNRQLSDQQDEERRRQLRERARQLIAEARSGVKMSELPSYGEMAAEKLKERSKASGDENDNIEIDTNEEIPEGFVVGGGDELTNLENDLDTPEQNSKLVDLKLKKLLEVQPQVANSPSSAAQKAVTESSEQDMKSGTEDLRTERLQKTTERFRNPVVFSKDSTVRKTQLQSFSQYIENRPEMKRQRSIQEDTKKGNEEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVNKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCVLQ", "sequence_length": 1231, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "48f05c66ad90552f85d69297cfd9759b775707feb486debbd40108cc836f84c9", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NDI1.json", "taxon_id": "9606", "uniprot_accession": "Q8NDI1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-cell-motility-involved-in-cerebral-cortex-radial-glia-gui-go0021822.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0021822", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-cell-motility-involved-in-cerebral-cortex-radial-glia-gui-go0021822.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bmerb-domain-ipr022735.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022735", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bmerb-domain-ipr022735.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/bmerb.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51848", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/bmerb.yaml" } ], "pfam_ids": [ "PF12130" ], "protein_name": "bMERB domain-containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELKQSLSVHLEAEKPLRRYGAVEETAWKAEGLGSQLDIISMAETSMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQREDELIQKIHRLVQKRDFLVDDAEVERLREQEEDKEMADFLRIKLKPLDKVTKTSASSRAEKKAEPPPSKPTVAKTGLALIKDCCGTTQCNIM", "sequence_length": 203, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "92e0b089d2898139df0d82988318d94b1184afbcd63c1c03e637dd925a1d2d16", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R1Y2.json", "taxon_id": "10090", "uniprot_accession": "Q8R1Y2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fad-binding-3-pf01494.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01494", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fad-binding-3-pf01494.yaml" } ], "pfam_ids": [ "PF00307", "PF00412", "PF01494", "PF12130", "PF25413" ], "protein_name": "[F-actin]-monooxygenase MICAL1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASPTSTNPAHAHFESFLQAQLCQDVLSSFQELCGALGLEPGGGLPQYHKIKDQLNYWSAKSLWTKLDKRAGQPVYQQGRACTSTKCLVVGAGPCGLRVAVELALLGARVVLVEKRTKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVTFTGLQPPPRKGSGWRAQLQPNPPAQLANYEFDVLISAAGGKFVPEGFKVREMRGKLAIGITANFVNGRTVEETQVPEISGVARIYNQSFFQSLLKATGIDLENIVYYKDDTHYFVMTAKKQCLLRLGVLRQDWPDTNRLLGSANVVPEALQRFTRAAADFATHGKLGKLEFAQDAHGQPDVSAFDFTSMMRAESSARVQEKHGARLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMVKRWAEGAESLEVLAERESLYQLLSQTSPENMHRNVAQYGLDPATRYPNLNLRAVTPNQVRDLYDVLAKEPVQRNNDKTDTGMPATGSAGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATAWALKVAENELGITPVVSAQAVVAGSDPLGLIAYLSHFHSAFKSMAHSPGPVSQASPGTSSAVLFLSKLQRTLQRSRAKENAEDAGGKKLRLEMEAETPSTEVPPDPEPGVPLTPPSQHQEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDHKAEGSDRGPESPELPTPSENSMPPGLSTPTASQEGAGPVPDPSQPTRRQIRLSSPERQRLSSLNLTPDPEMEPPPKPPRSCSALARHALESSFVGWGLPVQSPQALVAMEKEEKESPFSSEEEEEDVPLDSDVEQALQTFAKTSGTMNNYPTWRRTLLRRAKEEEMKRFCKAQTIQRRLNEIEAALRELEAEGVKLELALRRQSSSPEQQKKLWVGQLLQLVDKKNSLVAEEAELMITVQELNLEEKQWQLDQELRGYMNREENLKTAADRQAEDQVLRKLVDLVNQRDALIRFQEERRLSELALGTGAQG", "sequence_length": 1067, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "232ae305a6d9376b29f1910e6c81fa21e8808de35adf8f1d1098492ea7ff56c4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TDZ2.json", "taxon_id": "9606", "uniprot_accession": "Q8TDZ2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bmerb-domain-ipr022735.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022735", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bmerb-domain-ipr022735.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/bmerb.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51848", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/bmerb.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q96MC5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12130" ], "protein_name": "bMERB domain-containing protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "08860798aa2957622ecbe0d675d7bb64ca80bc69a93d1e5faa16b27bcd836cb9", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MELKQSLSTHLEAEKPLRRYGAVEETAWKTERLGRNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQREDELIQKIHKLVQKRDFLVDDAEVERLREQEEDKEMADFLRIKLKPLDKVTKSPASSRAEKKAEPPPSKPTVAKTGLALIKDCCGATQCNIM", "sequence_length": 204, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "08860798aa2957622ecbe0d675d7bb64ca80bc69a93d1e5faa16b27bcd836cb9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96MC5.json", "taxon_id": "9606", "uniprot_accession": "Q96MC5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/enucleation-go0090601.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090601", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/enucleation-go0090601.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/calponin-homology-ch-domain-found-in-eh-domain-binding-protein-1-like--cd21255.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd21255", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/calponin-homology-ch-domain-found-in-eh-domain-binding-protein-1-like--cd21255.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/bmerb-domain-ipr022735.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022735", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/bmerb-domain-ipr022735.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nt-type-c2-domain-ipr019448.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019448", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nt-type-c2-domain-ipr019448.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nt-c2-pf10358.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10358", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nt-c2-pf10358.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/bmerb.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51848", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/bmerb.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/c2-nt.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS51840", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/c2-nt.yaml" } ], "pfam_ids": [ "PF00307", "PF10358", "PF12130" ], "protein_name": "EH domain-binding protein 1-like protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYETKEWTFIIENESKGQRKVLATVDVNLAHHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEEEANGPGAPEVRTRGPQSDLSRELKTLCEEEDEGHIRPQQAAARPSSAEDTSPAPVSAPAPPVRAFRGQGSEPAAITGGQVGPETPEPPPSPPETRSTGQPGQTMVPTPAPRLRKGSDAPSSPVPCSGDEVPNTSEDPPTGMGSSGETQAQISSQEGTEAHEARPEPDIEVRGSKDSLGGERSKVEEEERGDGPGASGTGNREKNTKKSDTTAGEAGESSELHQVDAEHKSKVQHRATEGPEAAGLTPKARLGDTPEAPPRSAQRRMGVRTQEEAPSDLNPPPAEPEEHLGDLRDARPAGQEKGSAEVRSKVPAIGRAGPEQGSSARAASAGPQVSCVQTVPSDGQGVKSRDQRAQEAEVGESRVLETEAEWVPWEVIGTSKTDAGIPESLDTEAGTAESEILEAQESEAARSEGLEPEAAGTAESEVLRTQNNEIVVLGMPRTGPEIREPEEFGETEVGGFTVPDTKTVIAETEILETQGVVDGEAAVLKTQAEISETQKTEAGEAEAGTLESQKVAAEGLGAPEVGAEMAEAEKLGVQETEVEIWRIPRIETETAGTETLGIHKIGPPQMQPRLVGDQETDVSVMETAEDAILGTREITAGCGVLLIEAKIPESKIDRSLETEEGDLGVLEVDTGIAEAKILGIPERAPGVQKALGAGTEVARVLEAEAASSEVPETDAEEAETLQAKERSESSVALRVVANLPESELLGTQKTEVGGTGISQREVREAETEIPKTQEISSEGSGVPDLEAKMEESGRKMEIWETPEVEKVNSELFGTQKGSEIPELETKTIKSEILDAQETEVRDLGLRRGEAEKAEAEMLETQKMEAKTARDEEIELVDPGVSSPEAEALRVQWAGTVVLESGEVKADILGVQKPGSWGALKYEALDVPVTKQRLSGAKEVVPEVPRAQEPETKVLGIVEAKSWTLGQQEAEMEGFESPENKSNIFEAQEADSGVLGTMKGKEAVESLEEAGLSKAQVASEAGAGVPRPSGASSLEEPEEDRRLPGSQAPPTLVSSSQSLLEWCQEVTNGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYFSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGGGGSGTYRVGNAQPSLPDCLDAGDLAQRLREHGAEVPTEPKEAVNRGTGAIPKVASRDTDLSCSSKDGEAEVAQEAIPQEAPTDGPRARSSTTPVVPAEGLVNGVGASGGVRLRRSSVNGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDQDSGAAVGAGPAGPGAVEGPNPASSPDANPLPAPVPQQPPGGPPPTEESSPSLGEEAGLQRFQDTSQYVCAELQALEQEQGQIDGRAAEVEKQLRSLMESGANRLQEEVLIQEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFELLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDERLERGLEQRRRKVSRQLSRRERCTLS", "sequence_length": 1716, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aeb538e54c5b8365064cc13b5d4eb301ba936f8409a2e2612c6590e0014c87f8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q99MS7.json", "taxon_id": "10090", "uniprot_accession": "Q99MS7", "uniprot_release": "2026_03" } ], "pfam_id": "PF12130", "short_name": "bMERB_dom", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Trypanosoma brucei brucei", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3586-pf12131.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12131", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3586-pf12131.yaml" } ], "pfam_ids": [ "PF00112", "PF08246", "PF12131" ], "protein_name": "Cysteine proteinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPRTEMVRFVRLPVVLLAMAACLASVALGSLHVEESLEMRFAAFKKKYGKVYKDAKEEAFRFRAFEENMEQAKIQAAANPYATFGVTPFSDMTREEFRARYRNGASYFAAAQKRLRKTVNVTTGRAPAAVDWREKGAVTPVKVQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDSGCNGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQDEDAIAAYLAENGPLAIAVDAESFMDYNGGILTSCTSKQLDHGVLLVGYNDNSNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAVVGGPTPPPPPPPPPSATFTQDFCEGKGCTKGCSHATFPTGECVQTTGVGSVIATCGASNLTQIIYPLSRSCSGPSVPITVPLDKCIPILIGSVEYHCSTNPPTKAARLVPHQ", "sequence_length": 450, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "26f41d090d5f0d632fc83e5e002b4e40dc6ad4f146dcd2a200a93ee8049b6519", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P14658.json", "taxon_id": "5702", "uniprot_accession": "P14658", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Trypanosoma cruzi", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3586-pf12131.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12131", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3586-pf12131.yaml" } ], "pfam_ids": [ "PF00112", "PF08246", "PF12131" ], "protein_name": "Cruzipain", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGWARALLLAAVLVVMACLVPAATASLHAEETLTSQFAEFKQKHGRVYESAAEEAFRLSVFRENLFLARLHAAANPHATFGVTPFSDLTREEFRSRYHNGAAHFAAAQERARVPVKVEVVGAPAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVVGGPGPTPEPTTTTTTSAPGPSPSYFVQMSCTDAACIVGCENVTLPTGQCLLTTSGVSAIVTCGAETLTEEVFLTSTHCSGPSVRSSVPLNKCNRLLRGSVEFFCGSSSSGRLADVDRQRRHQPYHSRHRRL", "sequence_length": 467, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "025f853190443a62dc0aab5b6519576c4082395d16d4ac97a27d517515aeac9a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P25779.json", "taxon_id": "5693", "uniprot_accession": "P25779", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Leishmania pifanoi", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3586-pf12131.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12131", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3586-pf12131.yaml" } ], "pfam_ids": [ "PF00112", "PF08246", "PF12131" ], "protein_name": "Cysteine proteinase 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATSRAALCAVAVVCVVLAAACAPARAIHVGTPAAALFEEFKRTYGRAYETLAEEQQRLANFERNLELMREHQARNPHAQFGITKFFDLSEAEFAARYLNGAAYFAAAKRHAAQHYRKARADLSAVPDAVDWREKGAVTPVKDQGACGSCWAFSAVGNIEGQWYLAGHELVSLSEQQLVSCDDMNDGCDGGLMLQAFDWLLQNTNGHLHTEDSYPYVSGNGYVPECSNSSEELVVGAQIDGHVLIGSSEKAMAAWLAKNGPIAIALDASSFMSYKSGVLTACIGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYVRVVMGVNACLLSEYPVSAHVRESAAPGTSTSSETPAPRPVMVEQVICFDKNCTQGCRKTLIKANECHKNGGGGASMIKCSPQKVTMCTYSNEFCVGGGLCFETPDGKCAPYFLGSIMNTCHYT", "sequence_length": 444, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9afcbf372d09e339e671f56590380a2e6584f218e2485b499869b52a09377f8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q05094.json", "taxon_id": "5682", "uniprot_accession": "Q05094", "uniprot_release": "2026_03" } ], "pfam_id": "PF12131", "short_name": "DUF3586", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Campoletis sonorensis ichnovirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3587-pf12132.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12132", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3587-pf12132.yaml" } ], "pfam_ids": [ "PF12132" ], "protein_name": "Repeat element protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLETKESKVFTPVYFTSRQILLPLKMISYVSRFLKFEDFRKFIRAMWPNGEANVIFQELLERLSIRKFKAKFYNREEIEVEYKFDRERSGINWILINFKDLLPILGGIMLPDDEDKFQSIFTLEDFLKRNLKVHRCSGGIHTSCHNLGRDSDSDSEAKLDICPFDHYHHFCPDHVIAWFKHYLLTAILLREGVYDELVKNANLPNADHLTSGRRRTEQYWLRVARRKKCRFSQ", "sequence_length": 235, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b53a5f28a5c6271067ac93b9013144c8d0b1023786d1b0dfbf02b949a5a18591", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P17578.json", "taxon_id": "10484", "uniprot_accession": "P17578", "uniprot_release": "2026_03" } ], "pfam_id": "PF12132", "short_name": "DUF3587", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 9, "discovery_scanned": true, "example_count": 9, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sled-pf12140.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sled-pf12140.yaml" } ], "pfam_ids": [ "PF02820", "PF12140" ], "protein_name": "Scm-like with four MBT domains protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERYLPVSKKRNSSSSLEKITGSANGNGTLYSEEDTNLEENDFSWGDYLEETGTRAVPHVSFRHVEISIRSNFQPGMKLEVANKNNPDTYWVATIITTCGQLLLLRYCGYGEDRRADFWCDVIIADLHPVGWCTQNNKVLRPPDAIKDKYSDWTDFLIRELTGSRTAPANLLEGPLRGKGPIDLITVDSLIELQDSQNPFQYWIVSVTENVGGRLRLRYVGLEHTESYDRWLFYLDYRLRPIGWCQENKYRMDPPSDLYYLKLPFEWKCALEKALVLAAESPLPMEVFKDHADLQSHFFTVGMRLETLHISDPFHIYPASVTKVFNSKFFQVAIDDLRPEADKPTMLCHADSLGILPVQWCLKNGVNLAPPKGYSGQDFNWVDYHKQRQAEEAPHFCFKNAFSRGFSKNMKLEAVNPVNPGEVCVATVVSVKGRLLWLHLEGLETPMPDIIVDMDSMDIFPVGWCEANSYPLTTPYKASSKSKRKTVHFKMEKQLLSPVPIEKIPHELCLLPPQMDSPVGAINAKYCCPQLFVNHRCFSGPFLNKGRISELPQSVGPGMCVLVLKEILTLITNAAYKPGRVLRELQLVEDPEWNSQEEILKAKYGGKTYRAVVKIVRTADQVMNFCRQVCAKLECCPNLLSPVLISETCPENCSVHTKTRYTYYYGKRRRVIQSSLRVSNIETPPKSTRRRKRRKSVYVQKRRKSAIVVPAGVPAGVPAGVPEDIPAGIPEGIPASIPESIPEGIPESLPEAIPESIPKGSAQKTEQEKRETLDTARKKTGYHGPAYQTDTSAAQVPFARPRRAVTLRRNSEALKRPPVERARRVRTVPTTASSNNRVKGPLVRIVKPEDSSQSDEEKLILESNPLEWSVTDVVRFIKLTDCAPLARIFQEQDIDGQALLLLTLPTVQECMELKLGPAIKLCHQIERVKVAFYAQYAS", "sequence_length": 938, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e4bef2dcd0d668b61927bd6cbc0811a8072d7754489da41fbb6ced5081ddbfd8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5DTW2.json", "taxon_id": "10090", "uniprot_accession": "Q5DTW2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sled-pf12140.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sled-pf12140.yaml" } ], "pfam_ids": [ "PF00536", "PF02820", "PF12140" ], "protein_name": "Scm-like with four MBT domains protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESTLSASNMQDPSSSPLEKCLGSANGNGDLDSEEGSSLEETGFNWGEYLEETGASAAPHTSFKHVEISIQSNFQPGMKLEVANKNNPDTYWVATIITTCGQLLLLRYCGYGEDRRADFWCDVVIADLHPVGWCTQNNKVLMPPDAIKEKYTDWTEFLIRDLTGSRTAPANLLEGPLRGKGPIDLITVGSLIELQDSQNPFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFYLDYRLRPVGWCQENKYRMDPPSEIYPLKMASEWKCTLEKSLIDAAKFPLPMEVFKDHADLRSHFFTVGMKLETVNMCEPFYISPASVTKVFNNHFFQVTIDDLRPEPSKLSMLCHADSLGILPVQWCLKNGVSLTPPKGYSGQDFDWADYHKQHGAQEAPPFCFRNTSFSRGFTKNMKLEAVNPRNPGELCVASVVSVKGRLMWLHLEGLQTPVPEVIVDVESMDIFPVGWCEANSYPLTAPHKTVSQKKRKIAVVQPEKQLPPTVPVKKIPHDLCLFPHLDTTGTVNGKYCCPQLFINHRCFSGPYLNKGRIAELPQSVGPGKCVLVLKEVLSMIINAAYKPGRVLRELQLVEDPHWNFQEETLKAKYRGKTYRAVVKIVRTSDQVANFCRRVCAKLECCPNLFSPVLISENCPENCSIHTKTKYTYYYGKRKKISKPPIGESNPDSGHPKPARRRKRRKSIFVQKKRRSSAVDFTAGSGEESEEEDADAMDDDTASEETGSELRDDQTDTSSAEVPSARPRRAVTLRSGSEPVRRPPPERTRRGRGAPAASSAEEGEKCPPTKPEGTEDTKQEEEERLVLESNPLEWTVTDVVRFIKLTDCAPLAKIFQEQDIDGQALLLLTLPTVQECMELKLGPAIKLCHQIERVKVAFYAQYAN", "sequence_length": 894, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5da9b83525bc40d148dc5e715a1a4eef17ef37afe4b2229b7734b681453648a6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VUG0.json", "taxon_id": "9606", "uniprot_accession": "Q5VUG0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/sam-domain-of-scm-proteins-of-polycomb-group-sam-sterile-alpha-motif-d-cd09578.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09578", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/sam-domain-of-scm-proteins-of-polycomb-group-sam-sterile-alpha-motif-d-cd09578.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/polycomb-group-protein-rna-binding-region-ipr033763.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033763", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/polycomb-group-protein-rna-binding-region-ipr033763.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/sex-comb-on-midleg-like-sam-domain-ipr047531.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR047531", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sex-comb-on-midleg-like-sam-domain-ipr047531.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rbr-pf17208.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17208", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rbr-pf17208.yaml" } ], "pfam_ids": [ "PF00536", "PF12140", "PF17208" ], "protein_name": "Sex comb on midleg-like protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQTQRVPGRKRGRPPLHSTRVQMAVHNLYSASAASVPAVTIPKKRGRKPRYKIKSPVLMTPLALSPPRSTPEPDLSSIPQDAATIPSLVVPEALTVCLYINKQADVGPYLERRKLQQLPERLGPERPATVLQQAVQACIDCAHQPRLVFSLVKQGYRGELVSVSASFDGKQHLRSLPVVNSVGYVLRFLTKLCRSLLCDNLFSHLPFPGSIGASDKAQEREDGRTESAKVATAEECLANAVGMNRYAMDFSHRGSVTHSSSLYKRLTCGDSHLAGGPATTTSGSRTNPVPSGGSSSPGLRLPASSPKRNGTAIEGNRCAPSPSPEVQDTRRPSSRNPSTWTVEDVVRFVKDADPEALGPHVELFRKHEIDGNALLLLRSDMIMKYLGLKLGPALKLCYHIDKLKQAKF", "sequence_length": 408, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "361f52a13c5ef07311bb4610bdd1f4e466be76f230975e6259ebcdbfaae458e2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q80VG1.json", "taxon_id": "10090", "uniprot_accession": "Q80VG1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sled-pf12140.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sled-pf12140.yaml" } ], "pfam_ids": [ "PF00536", "PF02820", "PF12140", "PF17208" ], "protein_name": "Polycomb protein SCMH1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLVCYSVLACESLWDLPCSIMGSPLGHFTWDKYLKETCSVPAPVHCFKQSYTPPSNEFKISMKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSSEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIKIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGAEVLVTFDGWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPSPSSDVSTEKPSIHSTKTVLEHQPGQRGRKPGKKRGRTPKILIPHPTSTPSKSAEPLKFPKKRGPKPGSKRKPRTLLSPPPTSPTTSTPEPDTSTVPQDAATVPSSAMQAPTVCIYLNKSGSTGPHLDKKKIQQLPDHFGPARASVVLQQAVQACIDCAYHQKTVFSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRFLEKLCHNLRSDNLFGNQPFTQTHLSLTATEYNHNHDRYLPGETFVLGNSLARSLETHSDLMDSALKPANLVSTSQNLRTPGYRPLLPSCGLPLSTVSAVRRLCSKGVLKGKKERRDVESFWKLNHSPGSDRHLESRDPPRLSGRDPSSWTVEDVMQFVREADPQLGSHADLFRKHEIDGKALLLLRSDMMMKYMGLKLGPALKLSFHIDRLKQVFWKRETILWSREGLSREVWPISEDTALGHFFSGMDKVFGSLSKR", "sequence_length": 706, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "43eee9fde24168df986e7fb781f6e16b68df21e1ec95de3b7e0e8177dcdf42d0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8K214.json", "taxon_id": "10090", "uniprot_accession": "Q8K214", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/sam-domain-of-scm-proteins-of-polycomb-group-sam-sterile-alpha-motif-d-cd09578.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09578", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/sam-domain-of-scm-proteins-of-polycomb-group-sam-sterile-alpha-motif-d-cd09578.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/polycomb-group-protein-rna-binding-region-ipr033763.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033763", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/polycomb-group-protein-rna-binding-region-ipr033763.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/sex-comb-on-midleg-like-sam-domain-ipr047531.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR047531", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sex-comb-on-midleg-like-sam-domain-ipr047531.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/sled-domain-ipr021987.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021987", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sled-domain-ipr021987.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sled-pf12140.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sled-pf12140.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rbr-pf17208.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17208", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rbr-pf17208.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/sled-domain-superfamily-ipr038348.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038348", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/sled-domain-superfamily-ipr038348.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/sled-domain-3-90-1150-190.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.90.1150.190", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/sled-domain-3-90-1150-190.yaml" } ], "pfam_ids": [ "PF00536", "PF12140", "PF17208" ], "protein_name": "Sex comb on midleg-like protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQSQRIPGRKRGRPSLHSTPMKMAVHNLYSASAGSLPAVKIPKKRGRKPGYKIKSRVLMTPLALSPPRSTPEPDLSSIPQDAATVPSLAAPQALTVCLYINKQANAGPYLERKKVQQLPEHFGPERPSAVLQQAVQACIDCAHQQKLVFSLVKQGYGGEMVSVSASFDGKQHLRSLPVVNSIGYVLRFLAKLCRSLLCDDLFSHQPFPRGCSASEKVQEKEEGRMESVKTVTTEEYLVNPVGMNRYSVDTSASTFNHRGSLHPSSSLYCKRQNSGDSHLGGGPAATAGGPRTSPMSSGGPSAPGLRPPASSPKRNTTSLEGNRCASSPSQDAQDARRPRSRNPSAWTVEDVVWFVKDADPQALGPHVELFRKHEIDGNALLLLKSDMVMKYLGLKLGPALKLCYHIDKLKQAKF", "sequence_length": 414, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fd377931c9b5956898ed5d28f4cd9b3d9ed2aa4b5e174810b4b9524b7b0c925e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N228.json", "taxon_id": "9606", "uniprot_accession": "Q8N228", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sled-pf12140.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sled-pf12140.yaml" } ], "pfam_ids": [ "PF00536", "PF02820", "PF12140" ], "protein_name": "Scm-like with four MBT domains protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGEQQLDADLGSGVEVEEFSWEDYLEETGSTTVPYASFKHVDIRLQNGFAPGMKLEVALKNDPETYWVATIITACEQLLLLRYEGYGEDRKADFWCDIRKAGLYPIGWCQQNKKTLEAPEGIRDKVSDWNAFLQQTLIGACGPPVSLLEGLRNGRNPLDLIAPGSKLECQDFRDSLSTWLVTVVENIGGRLKLRYEGLESRDGFEHWLYYLDPFLHHIGWAAQQGCDLQPPLAIKHLKSEADWQEILAKVKEEEPLPSYLFKDKQVIGTHEFSINMKLEAVDPWSPFGISPATIAKVFDDKYFLVEMDDLRPEDHTRRSFVCHANSPGIFPVQWSLKNGLHINPPPGFRSQDFDWADYLKQCGAEAAPQKCFPQSISEHQFKENMKLEAVNPLFPEEVCIATVTAVRGSYLWLQLEGSKKPVPEFIVSAESMNIFPLGWCETNGHPLSTPRRARGHKLRKIAVVQPEKQILSSRTVHEGLKNQLNSTHSVMINGKYCCPKIYFNHRCFSGPYLNKGRIAELPQCVGPGNCVLVLREVLTLLINAAYKPSRVLRELQLDKDSVWHGCGEVLKAKYKGKSYRATVEIVRTADRVTEFCRQTCIKLECCPNLFGPRMVLDTCSENCSVLTKTKYTHYYGKKKNKRIGRPPGGHSNLSCALKKSSKRRKRRKNIFVHKKKRSSASVDNTPVGSPQGSGGEDEEDADDGDEDSLTEGSTSEQQEELQEESEVSEKKSSSSSPTQSETPTPLPPDTQTNKRDAQTSSVSDDENKPPSPKEIRIEVDERLHLDSNPLKWSVADVVRFIRSTDCAPLARIFLDQEIDGQALLLLTLPTVQECMDLKLGPAIKLCHHIERIKFAFYEQFAN", "sequence_length": 863, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2194ac0e84c850c9a00306716d9f1a9b6b2983bacd1a32ec422ce242b6ba2e01", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JMD1.json", "taxon_id": "10090", "uniprot_accession": "Q9JMD1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sled-pf12140.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sled-pf12140.yaml" } ], "pfam_ids": [ "PF00536", "PF02820", "PF12140" ], "protein_name": "Scm-like with four MBT domains protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNGEQQLDADAGSGMEEVELSWEDYLEETGSTAVPYGSFKHVDTRLQNGFAPGMKLEVAVRTDPETYWVATVITTCEQLLLLRYDGYGEDRRADFWCDIRKADLYPIGWCEQNKKTLEAPEGIRDKVSDWDEFLRQTLIGACSPPVPLLEGLRNGRNPLDLIAPGSRLECQAFQDSLSTWIVTVVENIGGRLKLRYEGLESSDNYEHWLYYLDPFLHHVGWAAQQGYELQPPSAIRHLKNEAEWQEILAKVKEEEEEPLPSYLFKDKQVIGIHTFSVNMKLEAVDPWSPFGISPATVVKVFDEKYFLVEMDDLRPENHARRSFVCHADSPGIFPVQWSLKNGLHISPPPGYPSQDFDWADYLKQCGAEAAPQRCFPPLISEHEFKENMKLEAVNPILPEEVCVATITAVRGSYLWLQLEGSKKPIPECIVSVESMDIFPLGWCETNGHPLSTPRRARVYKQRKIAVVQPEKQVPSSRTVHEGLRNQELNSTESVMINGKYCCPKIYFNHRCFSGPYLNKGRIAELPQCVGPGNCVLVLREVLTLLINAAYKPSRVLRELQLDKDSVWHGCGEVLKAKYKGKSYRATVEIVKTADRVTEFCRQTCIKLECCPNLFGPRMVLDKCSENCSVLTKTKYTHYYGKKKNKRIGRPPGGHSNLACALKKASKRRKRRKNVFVHKKKRSSASVDNTPAGSPQGSGGEDEDDPDEGDDDSLSEGSTSEQQDELQEESEMSEKKSCSSSPTQSEISTSLPPDRQRRKRELRTFSFSDDENKPPSPKEIRIEVAERLHLDSNPLKWSVADVVRFIRSTDCAPLARIFLDQEIDGQALLLLTLPTVQECMDLKLGPAIKLCHHIERIKFAFYEQFAN", "sequence_length": 866, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e8fd18bde8ab47cde0df23a9735039f87e9b1b583499ea1addf54378408bdb9e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UHJ3.json", "taxon_id": "9606", "uniprot_accession": "Q9UHJ3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sled-pf12140.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sled-pf12140.yaml" } ], "pfam_ids": [ "PF00536", "PF02820", "PF12140", "PF17208" ], "protein_name": "Sex comb on midleg-like protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGQTVNEDSMDVKKENQEKTPQSSTSSVQRDDFHWEEYLKETGSISAPSECFRQSQIPPVNDFKVGMKLEARDPRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLKTLNGSEMASATLFKKEPPKPPLNNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYDSRDIFPAGWCRLTGDVLQPPGTSVPIVKNIAKTESSPSEASQHSMQSPQKTTLILPTQQVRRSSRIKPPGPTAVPKRSSSVKNITPRKKGPNSGKKEKPLPVICSTSAASLKSLTRDRGMLYKDVASGPCKIVMSTVCVYVNKHGNFGPHLDPKRIQQLPDHFGPGPVNVVLRRIVQACVDCALETKTVFGYLKPDNRGGEVITASFDGETHSIQLPPVNSASFALRFLENFCHSLQCDNLLSSQPFSSSRGHTHSSAEHDKNQSAKEDVTERQSTKRSPQQTVPYVVPLSPKLPKTKEYASEGEPLFAGGSAIPKEENLSEDSKSSSLNSGNYLNPACRNPMYIHTSVSQDFSRSVPGTTSSPLVGDISPKSSPHEVKFQMQRKSEAPSYIAVPDPSVLKQGFSKDPSTWSVDEVIQFMKHTDPQISGPLADLFRQHEIDGKALFLLKSDVMMKYMGLKLGPALKLCYYIEKLKEGKYS", "sequence_length": 700, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ff9b3e809fc425a0058de6457c1e1f46e00da73b380fca7758ebf315e7f93eaa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UQR0.json", "taxon_id": "9606", "uniprot_accession": "Q9UQR0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sled-pf12140.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12140", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sled-pf12140.yaml" } ], "pfam_ids": [ "PF00536", "PF02820", "PF06467", "PF12140" ], "protein_name": "Polycomb protein Scm", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGGRDSSTSSGSNSAAPGASTNATSSASASASSTSTSASPGSTTSPASTQRQRGRPAKRATCTWCGEGKLPLQYVLPTQTGKKEFCSETCIAEFRKAYSKGACTQCDNVIRDGAPNKEFCSIMCMNKHQKKNCSTRHSGGSASGKGLAESERKLLASGAPAPTGPFQYESFHVFDWDAYLEETGSEAAPAKCFKQAQNPPNNDFKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRLDGSDSQNDFWRLVDSTEIHAIGHCEKNGGMLQPPLGFRMNASSWPGYLCKILNNAMVAPEEIFQPEPPEPEENLFKVGQKLEAVDKKNPQLICCATVDAIKDDQIHVTFDGWRGAFDYWCNYRSRDIFPAGWCARSCHPMQPPGHKSRMDSSSSKQRCPRPRYTVVAESEAMVPASPATAHFHPNCKGGPFINNSKLPCMVTGPTYQTLAKLCLQEVLAASTDTQQLSKLLFALEGDVHIVTAAGKNFTVKIPSPMRMKDDESLAQFIETLCTTCRACANLISLVHETEECKKCANSRKRQLTQSATPPSSPVLADKRNRQSNSATTSPSEKIIKQELAVKSPVESKSKTSTNNGKEPASQQNSNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSSTTQALRKVRFQHHANTNTNSSATNGNQDTSQTTHVSTSHCSSSSTSSSTSLAGGSANTSTIGKYLAPLVAEVHPEQANVKPSNSYYKSPTTLSSSASLPTSVSTPFTGCQSASSTALAAGGVTAAKAATAPAGAAATAGASPSYTAITSPVSTPTSALANSHLRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLLLNSEMMMKYMGLKLGPALKICNLVNKVNGRRNNLAL", "sequence_length": 877, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b64eeba7ce26b3e0a0f71d4a36545710177ae73c7d5904ea49c81827c39891da", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VHA0.json", "taxon_id": "7227", "uniprot_accession": "Q9VHA0", "uniprot_release": "2026_03" } ], "pfam_id": "PF12140", "short_name": "SLED", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Candida albicans (strain SC5314 / ATCC MYA-2876)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bmt-pf12141.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bmt-pf12141.yaml" } ], "pfam_ids": [ "PF12141" ], "protein_name": "Beta-mannosyltransferase 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLAWLRHRIRSYNTSTYSSILPSASFGKVYKIGTKLNFTLLALCLLLACSVFFNYFYLADNNGLDIDTKGEEEENVFKDRKMVIFPNNFEITDKNLLEYYLKTLEEPLHPQDTIYRNRFIYKVPDVSYTSQTINLFSGLSQNSQSSKCEDLSSSYSFDVSGPQNKNCDLYKVLGKFLNDDSEYFQEISPLFPKLKEMLVKKEIEKHWFQLIGSSVWLEQYGVHLMTSRIFYSSTGDKVKPVVSLTYVQVFDHEWREIENVELIVPDGEGKYKPMTYPTFLPMSVYHNEKQQQGRFYGVEDPRITLVRNKLGYDEPIIVYNSHHRKITDAKSDNDGESNIHFKAYRSIFMAWLWQNQKGKNNVEEIETGKMKNRVYVKSKELIKPNNKREDKEKNWAPFINYQQRLQQGFDSHVYFMYQFQDLKILKCSLLDEEDCVWEYQFNDKNGAGRLRGGTELVNINQLLTTFDHPEIKRVKDLMPQNREIWIGVARAALEKCGCGDKMYRPNIVILIKDGDDQYRLSHVSPFVGLGIPILPWWPDKGLCDGKNLIIPNGISSWHLNKDEDNSVQDYLTLSISRADSTVDLLHIKGLLKSILFDDPNSKLLELNDYGFNNKNIECAVKSSDAFCKKYGSEYKLNNNKEEDKANGNGKGSSS", "sequence_length": 654, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c44ddbaf271ca7d0a789980d641761567ab6d34b33a991142da9034f5e272259", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q59MA6.json", "taxon_id": "237561", "uniprot_accession": "Q59MA6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Candida albicans (strain SC5314 / ATCC MYA-2876)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bmt-pf12141.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bmt-pf12141.yaml" } ], "pfam_ids": [ "PF12141" ], "protein_name": "Beta-mannosyltransferase 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFESDLSFYSALLILCCPISIVFFKKFPIKGYTGANKVSLFLQCLIAILNLNILYSFINSLTITLGHDGSSANTLTIDPITTTQQQGHVDYTPIKVSGYTFKNQVATKNLQCDSIVYDQDLDLQVSQAVDLNKPEDLKFFRDKLNELRSLNNIYDLFFQDNEDEVEESILERKWYKFCGSAVWLDKYGVYFMVNRIAYSKKGTRNNPTISVLAGQVFDKNWIELTGKKFPFSGLEFPTILPHYIDEGKEAEKVILGAEDPRVILHEYTNENGIRIQEPLIAFNALSTEVDWKRAMHIYRPLHDPHRIIRLSIENYAPREKEKNWAPFIDGNNLNFVYNFPLRILRCNINNGDCQKVSGPDFNDKSHENAGKLRGGTNLVEIPSQSLPKHLRSRKYWFGIARSHITDCGCVGELYRPHLILISRNKKSDQYELNYVSDLIDFNVNPEPWTPGKTTCSDGKSVLIPNSVAFIKDDYMSVTFSEADKTNKLINAKGWLTYITKMLEFTQERLKDESSDPVLESRLLSKCSTFLAQQYCALSKDTMGWDKLSR", "sequence_length": 549, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2bfc2379076c7123f0cba6810e8773720f995d68258dd74d5d54f8729a607869", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5A846.json", "taxon_id": "237561", "uniprot_accession": "Q5A846", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Candida albicans (strain SC5314 / ATCC MYA-2876)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bmt-pf12141.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bmt-pf12141.yaml" } ], "pfam_ids": [ "PF12141" ], "protein_name": "Beta-mannosyltransferase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKFIQSFSHQYLDSSSSLKLTARRKRKLTILGLFLFSLISLMIIISYSNNNILPGLSGISISSTFSDYYSNPKQQNKFEQQIQDHQTTKKGKRTIIFPNNFNHVHDHKGSYMMKDSELVKYYVETMEQALDPEDLIYRNRFTYKLPNIPYTEQKIEMFSDGGGGGGDTSDSNTDMCPKLSTTIKVEASPAMNKNGDLKKILKTFLQEDSFYYRELSPFFPDLKKHFDEDTIDKHWYQFIGSTVWLEQYGVHLMVSRIIYTEKDQGSPKFSLAYLQVFDRNWKELDNVELIVPDPENISTTNNKNKNKKPYGYKSVLYPTIAPIPVYHNSKQTGGRFYGIEDPRIVLIKTRHGYEEPVLIYNSHHRKISEKHFDNDQEGKINFNNYRSLFIGWIWQTQLGKIHLEELPNNEFKKNEYIKIKEFVKPNNNRGRTEKNWALFINYNQRLNQGFDSHVYFANQLKNLKILKCSILNDNDDDCEWEFQMDDYEDAGVLHGGTELININQLLHQYDYPELNSIKDLIPNGREYWVGFARASLKNCGCGSRMYRPNLIVLMKDGKNYKFAYVSSFVGLGIEILPWYLDKGLCEHYNLIIPNGISSWTIEKDLHQKEKDKQVMDYMAFTISRRDATVDVVYVKGLLKALFTDSSSSKHLLAVEQTGFKSVTNVDCALKNSEKFCKIYGETF", "sequence_length": 684, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "30ca9cd27ca6ab3a92aa80a1f25030c4a88ee7279857da39546bd1c3c48f3aa1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5ADQ9.json", "taxon_id": "237561", "uniprot_accession": "Q5ADQ9", "uniprot_release": "2026_03" } ], "pfam_id": "PF12141", "short_name": "BMT", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ttd-pf12148.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12148", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ttd-pf12148.yaml" } ], "pfam_ids": [ "PF00240", "PF00628", "PF02182", "PF12148" ], "protein_name": "E3 ubiquitin-protein ligase UHRF2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWIQVRTIDGSQTRTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSSLPSTSKQNDAQVKPSSHNPPKVKKTARGGSSSQPSTSARTCLIDPGFGLYKVNELVDARDVGLGAWFEAHIHSVTRASDGHSRGKTPLKNGSSYKRTNGNVNHNSKENTNKLDNVPSTSNSDSVAADEDVIYHIEYDEYPESGILEMNVKDLRPRARTILKWNELNVGDVVMVNYNVENPGKRGFWYDAEITTLKTISRTKKEVRVKVFLGGSEGTLNDCRVMSVDEIFKIEKPGAHPISFADGKFLRKNDPECDLCGGDPDKTCHMCSCHKCGEKRDPNMQLLCDECNMAYHIYCLSPPLDKVPEEEYWYCPSCKTDSSEVVKAGERLKLSKKKAKMPSASTESRRDWGRGMACVGRTKECTIVPSNHYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSNDGAYSLVLAGGFEDEVDRGDEFTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAPEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEPAPWTSEGIERSRRLCLRLQYPAGYPSEKEGKKTKGQSKKQGSEATKRPASDDECPGDSKVLKASDSTDAVEAFQLTPQQQRLIREDCQNQKLWDEVLASLVEGPNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYVMVLNETLQTLLDLFFPGYSKGR", "sequence_length": 803, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "71e58f200d9f7c0b33424b9f801f24f7f016da787c9e7e6027f1ee0aab781590", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7TMI3.json", "taxon_id": "10090", "uniprot_accession": "Q7TMI3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ttd-pf12148.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12148", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ttd-pf12148.yaml" } ], "pfam_ids": [ "PF00240", "PF00628", "PF02182", "PF12148" ], "protein_name": "E3 ubiquitin-protein ligase UHRF1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWIQVRTMDGKETHTVNSLSRLTKVQELRKKIEEVFHVEPQLQRLFYRGKQMEDGHTLFDYDVRLNDTIQLLVRQSLALPLSTKERDSELSDSDSGYGVGHSESDKSSTHGEGAAEADDKTVWEDTDLGLYKVNEYVDVRDNIFGAWFEAQVVQVQKRALSEDEPCSSSAVKTSEDDIMYHVKYDDYPEHGVDIVKAKNVRARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEICRKRQTRTARELYGNIRLLNDSQLNNCRIMFVDEVLMIELPKERRPLIASPSQPPPALRNTGKSGPSCRFCKDDENKPCRKCACHVCGGREAPEKQLLCDECDMAFHLYCLKPPLTSVPPEPEWYCPSCRTDSSEVVQAGEKLKESKKKAKMASATSSSRRDWGKGMACVGRTTECTIVPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEPEPWTREGKDRTRQLGLTMQYPEGYLEALANKEKSRKRPAKALEQGPSSSKTGKSKQKSTGPTLSSPRASKKSKLEPYTLSEQQANLIKEDKGNAKLWDDVLTSLQDGPYQIFLSKVKEAFQCICCQELVFRPVTTVCQHNVCKDCLDRSFRAQVFSCPACRFELDHSSPTRVNQPLQTILNQLFPGYGSGR", "sequence_length": 782, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "508ea3cc2387735e8db31632a7d18db2a747c2ca889fdad2a59c907af06c2e73", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VDF2.json", "taxon_id": "10090", "uniprot_accession": "Q8VDF2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ttd-pf12148.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12148", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ttd-pf12148.yaml" } ], "pfam_ids": [ "PF00240", "PF00628", "PF02182", "PF12148" ], "protein_name": "E3 ubiquitin-protein ligase UHRF2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDPDHLPGTSTQIEAKPCSNSPPKVKKAPRVGPSNQPSTSARARLIDPGFGIYKVNELVDARDVGLGAWFEAHIHSVTRASDGQSRGKTPLKNGSSCKRTNGNIKHKSKENTNKLDSVPSTSNSDCVAADEDVIYHIQYDEYPESGTLEMNVKDLRPRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEITTLKTISRTKKELRVKIFLGGSEGTLNDCKIISVDEIFKIERPGAHPLSFADGKFLRRNDPECDLCGGDPEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTDSSEVVKAGERLKMSKKKAKMPSASTESRRDWGRGMACVGRTRECTIVPSNHYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSNDGAYSLVLAGGFADEVDRGDEFTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAPEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEPAPWTSEGIERSRRLCLRLQYPAGYPSDKEGKKPKGQSKKQPSGTTKRPISDDDCPSASKVYKASDSAEAIEAFQLTPQQQHLIREDCQNQKLWDEVLSHLVEGPNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGYSKGR", "sequence_length": 802, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4b5db2e85525f49b3bc2250680cd698dc9b8db6736375ddea7011116bf83ed69", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96PU4.json", "taxon_id": "9606", "uniprot_accession": "Q96PU4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ttd-pf12148.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12148", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ttd-pf12148.yaml" } ], "pfam_ids": [ "PF00240", "PF00628", "PF02182", "PF12148" ], "protein_name": "E3 ubiquitin-protein ligase UHRF1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQSLVLPHSTKERDSELSDTDSGCCLGQSESDKSSTHGEAAAETDSRPADEDMWDETELGLYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETRTARELYANVVLGDDSLNDCRIIFVDEVFKIERPGEGSPMVDNPMRRKSGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDASEVVLAGERLRESKKKAKMASATSSSQRDWGKGMACVGRTKECTIVPSNHYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDHGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEPGPWTKEGKDRIKKLGLTMQYPEGYLEALANREREKENSKREEEEQQEGGFASPRTGKGKWKRKSAGGGPSRAGSPRRTSKKTKVEPYSLTAQQSSLIREDKSNAKLWNEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGYGNGR", "sequence_length": 793, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0076040428b7f909caf2ddfe8f2c4f199dce3c4cdf29c33dbe4f6c4f7ad23c25", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96T88.json", "taxon_id": "9606", "uniprot_accession": "Q96T88", "uniprot_release": "2026_03" } ], "pfam_id": "PF12148", "short_name": "TTD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/bromodomain-tfiid-like-subfamily-human-tafii250-or-taf250-is-the-large-cd05511.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05511", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/bromodomain-tfiid-like-subfamily-human-tafii250-or-taf250-is-the-large-cd05511.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transcription-initiation-factor-tfiid-subunit-1-histone-acetyltransfer-ipr022591.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022591", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transcription-initiation-factor-tfiid-subunit-1-histone-acetyltransfer-ipr022591.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3591-pf12157.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12157", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3591-pf12157.yaml" } ], "pfam_ids": [ "PF00439", "PF12157", "PF15288" ], "protein_name": "Transcription initiation factor TFIID subunit 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNTHHHTNGYRTEKPKNEEDLEDPYANLSDFYKNHPAARNEACSSASNGGSKSVKMEPKVEKNEEFEEYIGDPVRLEDMEPFARPSLRDDAPLSSILHPDLDGIDPRIFFKDFNPNKTLRFSRLFAQNIKHTSRAEIWWASRTFSKHQRKKEPEEPLADDVIVGAKKLKLNIIEKVPRVMLADDEEERMRRPILTDAEEMAKKNEEGTVVQPWRTGPAKIWYDMMNLPMTSQAVNYGFKLKKSPQKVSIRSGKPLNYRTPDDLPSTSSGPAPNSAPFLDKVEVIDKSCEASTSEDILLPYQVIEWENDVILDGEEVKDQLLEEFSNGRGCGWIPTQYTRTYEHFVYAANNNAFEQMFDGKSAPINLTGPDSAILPTPGHSIFPSAPCDLDILPWETNIIWDADAMPSTLEPIDFLVDFQDDPLIYGMPEDRRHDEGPDHHHHHHHHRKDGQYTKKSKMILGQVQQRQKQEEDEQMESTMAQFTDNDPFNLSNDDYYVPKATSKTLSNNSLLIQHSTPATNIATHFFPTHPSAFRLRYWHRTPFTRRIVRHWQPMRFQPIQTPVKHQQRVAAMREAMRQAQGGGEVFYMRDVQDLSGKDETLVMIEYSEEHPVILSQPGMASKMKNYFKRRQANDSEPTFTFGELAFSHQIPFLGQLQPGQSLQSIENMLYRAPIYLHKRQNTDFLLIRSMNQWYIRPLPSIFVAGQQCPLYEVPSPNSKRATVFVRDFLFAFIYRLFWASDSSPRRLKMDDVRNAFPHYAESNIRKRLKMCSTFVRQGSETYWSLKPDFRLPSKEEVLSMVTPEMCCAQYSMMAAEQRLKDAGYGEKYFFTPENDEGSEDEVTIEDEIKCAPWNTTRAFLASQREKCLLDQTGIADPTGCGQGFSYVRVSQKPHKDENATPVPKKLVTGTNADLRKLPLKEAKQICRGYGVKEEEISALTRWEIIDVIRTLSTQAAKATKDGEIIAVSGMARFARGNTRFSSADMQEKYRKHCQRIFDQQNQTLANTDPISTDDDSTDADSDNEELASRLESMLEANKGKKNISMSEKAKIDFETEEKEREDLKRMIHGTTNQVEKGEKKEEGEVTAEEKKSASQFGEDVAMSASKISGITANQQLKIYRTCKGPDGKDVTRIEIVTRPQLIEAYTRIRMTRDDTFIQVYAQMDEQYKEEKRKKKRRLQDQIRRMKKNEEKAAHKVQKMTEKKVKPIKPPNPNLQKMRCSACHAYGHMKTNRNCPLYGKDPLTPLKEEDEGSTIMTSVSSASLVAPDAVQVDGTKVKFNLNFAEIRKEQNREEKLKRKLAKMAEAAVRERQMAHLMEYGGGASSSGGAGGGGSGIGGSTGGGITDNDDDDRFSQISGTSSFLNGPPGAIRGGNRNSSVSGSKRRSSMMPEEDYLQGPLKVAHRARADPKVVMSSMLTDIVNELKMISGSDAFVTPVNSKKVVDYYNIIKNPISLQEIKKKISEQSYLLRKDFLDDIKLMFDNSRMYNGDNNILTLTAQQMLQLAGKRMIEREQKFIGLEKQINPLLDTNDLIGFSYLLGEIVQKMKNIPKSALFHTRVDPKKIPAYYLKISDPMDLSIMEQKSKSQEYKSIDEFLKDAEKIYTNSVVFNGAESVYSLKAKEMFEMAEMLVKDQMDTLGELERNINPSAINDAAAAQRGLAMDSDDHMDEMEDHPTEEEEEDDDDEIMDDDMDIDATGYSYDHDDNVAVGQIFNDLAMSDSDEDERAEDVKRPANGDDNLLDSF", "sequence_length": 1744, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d954d0a2d443d30ace70558c7ff8944d83f8489c8274294ade5450b0540565a0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G5EGM3.json", "taxon_id": "6239", "uniprot_accession": "G5EGM3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bromodomain-pf00439.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00439", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bromodomain-pf00439.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3591-pf12157.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12157", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3591-pf12157.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/bromodomain-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00633", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/bromodomain-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P21675", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00439", "PF09247", "PF12157", "PF15288" ], "protein_name": "Transcription initiation factor TFIID subunit 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "429a9fd10d9f414f12ee1a8c97d42414a01339a064a93b73e0b9288a2a62253a", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGPGCDLLLRTAATITAAAIMSDTDSDEDSAGGGPFSLAGFLFGNINGAGQLEGESVLDDECKKHLAGLGALGLGSLITELTANEELTGTDGALVNDEGWVRSTEDAVDYSDINEVAEDESRRYQQTMGSLQPLCHSDYDEDDYDADCEDIDCKLMPPPPPPPGPMKKDKDQDSITGVSENGEGIILPSIIAPSSLASEKVDFSSSSDSESEMGPQEATQAESEDGKLTLPLAGIMQHDATKLLPSVTELFPEFRPGKVLRFLRLFGPGKNVPSVWRSARRKRKKKHRELIQEEQIQEVECSVESEVSQKSLWNYDYAPPPPPEQCLSDDEITMMAPVESKFSQSTGDIDKVTDTKPRVAEWRYGPARLWYDMLGVPEDGSGFDYGFKLRKTEHEPVIKSRMIEEFRKLEENNGTDLLADENFLMVTQLHWEDDIIWDGEDVKHKGTKPQRASLAGWLPSSMTRNAMAYNVQQGFAATLDDDKPWYSIFPIDNEDLVYGRWEDNIIWDAQAMPRLLEPPVLTLDPNDENLILEIPDEKEEATSNSPSKESKKESSLKKSRILLGKTGVIKEEPQQNMSQPEVKDPWNLSNDEYYYPKQQGLRGTFGGNIIQHSIPAVELRQPFFPTHMGPIKLRQFHRPPLKKYSFGALSQPGPHSVQPLLKHIKKKAKMREQERQASGGGEMFFMRTPQDLTGKDGDLILAEYSEENGPLMMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQAFENNLFRAPIYLHKMPETDFLIIRTRQGYYIRELVDIFVVGQQCPLFEVPGPNSKRANTHIRDFLQVFIYRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAMVSPEQCCAYYSMIAAEQRLKDAGYGEKSFFAPEEENEEDFQMKIDDEVRTAPWNTTRAFIAAMKGKCLLEVTGVADPTGCGEGFSYVKIPNKPTQQKDDKEPQPVKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVIDVVRTMSTEQARSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLSSTEVLSTDTDSSSAEDSDFEEMGKNIENMLQNKKTSSQLSREREEQERKELQRMLLAAGSAASGNNHRDDDTASVTSLNSSATGRCLKIYRTFRDEEGKEYVRCETVRKPAVIDAYVRIRTTKDEEFIRKFALFDEQHREEMRKERRRIQEQLRRLKRNQEKEKLKGPPEKKPKKMKERPDLKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAMTEEQEEELEKTVIHNDNEELIKVEGTKIVLGKQLIESADEVRRKSLVLKFPKQQLPPKKKRRVGTTVHCDYLNRPHKSIHRRRTDPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEAALEEAELESLDPMTPGPYTPQPPDLYDTNTSLSMSRDASVFQDESNMSVLDIPSATPEKQVTQEGEDGDGDLADEEEGTVQQPQASVLYEDLLMSEGEDDEEDAGSDEEGDNPFSAIQLSESGSDSDVGSGGIRPKQPRMLQENTRMDMENEESMMSYEGDGGEASHGLEDSNISYGSYEEPDPKSNTQDTSFSSIGGYEVSEEEEDEEEEEQRSGPSVLSQVHLSEDEEDSEDFHSIAGDSDLDSDE", "sequence_length": 1893, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "429a9fd10d9f414f12ee1a8c97d42414a01339a064a93b73e0b9288a2a62253a", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P21675.json", "taxon_id": "9606", "uniprot_accession": "P21675", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transcription-initiation-factor-tfiid-subunit-1-histone-acetyltransfer-ipr022591.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022591", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transcription-initiation-factor-tfiid-subunit-1-histone-acetyltransfer-ipr022591.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zinc-knuckle-ipr041670.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041670", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zinc-knuckle-ipr041670.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zf-cchc-6-pf15288.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15288", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-cchc-6-pf15288.yaml" } ], "pfam_ids": [ "PF12157", "PF15288" ], "protein_name": "Transcription initiation factor TFIID subunit 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVKQQGSGKTNLANEDEAYEAIFGGEFGSLEIGSYIGGDEGANSKDYTEHLPDAVDFEDEDELADDDDDLPEESDANLHPAMMTMGAYDDVNENGAVLGIDSNSLNMQLPEINGDLSQQFILEDDGGTPATSNALFMGMDANEIHLATETGVLDGSGANEIGHSQLSIGGVNGNDMSINGGFIMEPDMSDGKHKKATKLDLINHEKYLLKKYFPDFEKGKILKWNKLIYRRSVPYHWHSEISRVKKPFMPLNLKFKVQQDDKRLFNSRTISYVAPIYQGKNNLLQSNSSASRRGLIHVSIDELFPIKEQQKKRKIIHDEKTISEDLLIATDDWDQEKIINQGTSSTATLADSSMTPNLKFSGGYKLKSLIEDVAEDWQWDEDMIIDAKLKESKHAELNMNDEKLLLMIEKTNNLAQQKQQLDSSNLILPLNETILQQKFNLSNDDKYQILKKTHQTKVRSTISNLNIQHSQPAINLQSPFYKVAVPRYQLRHFHRENFGSHIRPGTKIVFSKLKARKRKRDKGKDVKESFSTSQDLTIGDTAPVYLMEYSEQTPVALSKFGMANKLINYYRKANEQDTLRPKLPVGETHVLGVQDKSPFWNFGFVEPGHIVPTLYNNMIRAPVFKHDISGTDFLLTKSSGFGISNRFYLRNINHLFTVGQTFPVEEIPGPNSRKVTSMKATRLKMIIYRILNHNHSKAISIDPIAKHFPDQDYGQNRQKVKEFMKYQRDGPEKGLWRLKDDEKLLDNEAVKSLITPEQISQVESMSQGLQFQEDNEAYNFDSKLKSLEENLLPWNITKNFINSTQMRAMIQIHGVGDPTGCGEGFSFLKTSMKGGFVKSGSPSSNNNSSNKKGTNTHSYNVAQQQKAYDEEIAKTWYTHTKSLSISNPFEEMTNPDEINQTNKHVKTDRDDKKILKIVRKKRDENGIIQRQTIFIRDPRVIQGYIKIKEQDKEDVNKLLEEDTSKINNLEELEKQKKLLQLELANLEKSQQRRAARQNSKRNGGATRTENSVDNGSDLAGVTDGKAARNKGKNTTRRCATCGQIGHIRTNKSCPMYSSKDNPASPK", "sequence_length": 1066, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fd3fd102dfd5fc5cefa4a1fb294a949513ca7f01e01b1101c9921b802c8b5d62", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P46677.json", "taxon_id": "559292", "uniprot_accession": "P46677", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3591-pf12157.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12157", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3591-pf12157.yaml" } ], "pfam_ids": [ "PF00439", "PF09247", "PF12157", "PF15288" ], "protein_name": "Transcription initiation factor TFIID subunit 1-like", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRPGCDLLLRAAATVTAAIMSDSDSEEDSSGGGPFTLAGILFGNISGAGQLEGESVLDDECKKHLAGLGALGLGSLITELTANEELTGTGGALVNDEGWIRSTEDAVDYSDINEVAEDESQRHQQTMGSLQPLYHSDYDEDDYDADCEDIDCKLMPPPPPPPGPMKKDKDQDAITCVSESGEDIILPSIIAPSFLASEKVDFSSYSDSESEMGPQEATQAESEDGKLTLPLAGIMQHDATKLLPSVTELFPEFRPGKVLRFLHLFGPGKNVPSVWRSARRKRKKHRELIQEEQIQEVECSVESEVSQKSLWNYDYAPPPPPEQCLADDEITMMVPVESKFSQSTGDVDKVTDTKPRVAEWRYGPARLWYDMLGVSEDGSGFDYGFKLRKTQHEPVIKSRMMEEFRKLEESNGTDLLADENFLMVTQLHWEDSIIWDGEDIKHKGTKPQGASLAGWLPSIKTRNVMAYNVQQGFAPTLDDDKPWYSIFPIDNEDLVYGRWEDNIIWDAQAMPRLLEPPVLALDPNDENLILEIPDEKEEATSNSPSKESKKESSLKKSRILLGKTGVIREEPQQNMSQPEVKDPWNLSNDEYYFPKQQGLRGTFGGNIIQHSIPAMELWQPFFPTHMGPIKIRQFHRPPLKKYSFGALSQPGPHSVQPLLKHIKKKAKMREQERQASGGGELFFMRTPQDLTGKDGDLILAEYSEENGPLMMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQALENNLFRAPVYLHKMPETDFLIIRTRQGYYIRELVDIFVVGQQCPLFEVPGPNSRRANMHIRDFLQVFIYRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAKVSPEQCCAYYSMIAAKQRLKDAGYGEKSFFAPEEENEEDFQMKIDDEVHAAPWNTTRAFIAAMKGKCLLEVTGVADPTGCGEGFSYVKIPNKPTQQKDDKEPQAVKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVIDVVRTMSTEQAHSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLSSTEVLSTDTDSISAEDSDFEEMGKNIENMLQNKKTSSQLSREWEEQERKELRRMLLVAGSAASGNNHRDDVTASMTSLKSSATGHCLKIYRTFRDEEGKEYVRCETVRKPAVIDAYVRIRTTKDEKFIQKFALFDEKHREEMRKERRRIQEQLRRLKRNQEKEKLKGPPEKKPKKMKERPDLKLKCGACGAIGHMRTNKFCPLYYQTNVPPSKPVAMTEEQEEELEKTVIHNDNEELIKVEGTKIVFGKQLIENVHEVRRKSLVLKFPKQQLPPKKKRRVGTTVHCDYLNIPHKSIHRRRTDPMVTLSSILESIINDMRDLPNTHPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKCLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNICYQTITEYDEHLTQLEKDICTAKEAALEEAELESLDPMTPGPYTSQPPDMYDTNTSLSTSRDASVFQDESNLSVLDISTATPEKQMCQGQGRLGEEDSDVDVEGYDDEEEDGKPKPPAPEGGDGDLADEEEGTVQQPEASVLYEDLLISEGEDDEEDAGSDEEGDNPFSAIQLSESGSDSDVGYGGIRPKQPFMLQHASGEHKDGHGK", "sequence_length": 1826, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c99b95bbeb99680c295683184161ad9ccf63e378b736f06ef5be8f6ff56aff76", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IZX4.json", "taxon_id": "9606", "uniprot_accession": "Q8IZX4", "uniprot_release": "2026_03" } ], "pfam_id": "PF12157", "short_name": "DUF3591", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3592-ipr021994.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021994", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3592-ipr021994.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3592-pf12158.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12158", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3592-pf12158.yaml" } ], "pfam_ids": [ "PF12158" ], "protein_name": "Inner membrane protein YmfA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKDGSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIGIMGVIFIAVGLLISMPSSKKSRRKRKSRP", "sequence_length": 153, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9f0771fbc508a1a6b0873e161950db09988879d6a1863848d18a0c67384b34c9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P75962.json", "taxon_id": "83333", "uniprot_accession": "P75962", "uniprot_release": "2026_03" } ], "pfam_id": "PF12158", "short_name": "DUF3592", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12159", "short_name": "DUF3593", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/alfin-pf12165.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12165", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/alfin-pf12165.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5XEM9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00628", "PF12165" ], "protein_name": "PHD finger protein ALFIN-LIKE 5", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "162d67aaadb02094cff0bf42c54747341d40489592202cbc108df65e5ee0663d", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEGGTAHYSPRTVEEVFRDFKGRRAGIIQALTTDVEDFFQQCDPEKQNLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERNWLSLVAVHSDAWLLSVSFYFGSRFGFDRADRKRLFSMINEVPTVYEVVTGNAEKQTKEMPSSANQNGNRSKSNSKMRGLESKSSKTIHAKDEEEGLELEEGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGECVKITPARAEHIKHYKCPTCSNKRARP", "sequence_length": 260, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "162d67aaadb02094cff0bf42c54747341d40489592202cbc108df65e5ee0663d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5XEM9.json", "taxon_id": "3702", "uniprot_accession": "Q5XEM9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/alfin-pf12165.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12165", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/alfin-pf12165.yaml" } ], "pfam_ids": [ "PF00628", "PF12165" ], "protein_name": "PHD finger protein ALFIN-LIKE 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGIQHPIPRTVEEVFSDFRGRRAGLIKALSTDVQKFYHQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNAKQSKDQSANHNSSRSKSSGGKPRHSESHTKASKMSPPPRKEDESGDEDEDDEQGAVCGACGDNYGGDEFWICCDACEKWFHGKCVKITPAKAEHIKHYKCPSCTTSKKMKA", "sequence_length": 252, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a7c84d43908539cce75ec2bc71c6e8b799ea3a95e9d11a719cd0fa98f175fedf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LA16.json", "taxon_id": "3702", "uniprot_accession": "Q8LA16", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/alfin-pf12165.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12165", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/alfin-pf12165.yaml" } ], "pfam_ids": [ "PF00628", "PF12165" ], "protein_name": "PHD finger protein ALFIN-LIKE 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGITHPIPRTVEEVFSDFRGRRAGLIKALTNDMVKFYQTCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWVSLVAVHSDSWLLSVAFYFGARFGFGKNERKRLFQMINELPTIFEVVSGNAKQSKDLSVNNNNSKSKPSGVKSRQSESLSKVAKMSSPPPKEEEEEEDESEDESEDDEQGAVCGACGDNYGTDEFWICCDACEKWFHGKCVKITPAKAEHIKHYKCPTCSNKRARP", "sequence_length": 256, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "245e1dcb7cd5a1d1ac18389255288de1664a39e87d50e69e9f15f436e63bfe26", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8S8M9.json", "taxon_id": "3702", "uniprot_accession": "Q8S8M9", "uniprot_release": "2026_03" } ], "pfam_id": "PF12165", "short_name": "Alfin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/piezo-non-specific-cation-channel-cap-domain-ipr031334.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/piezo-non-specific-cation-channel-cap-domain-ipr031334.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/piezo-thu9-and-anchor-domain-ipr056770.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056770", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/piezo-thu9-and-anchor-domain-ipr056770.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/piezo-tm1-24-ipr056769.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/piezo-tm1-24-ipr056769.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/piezo-tm25-28-ipr031805.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031805", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/piezo-tm25-28-ipr031805.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"MEPHVLGAVLYWLLLPCALLAACLLRFSGLSLVYLLFLLLLPWFPGPTRCGLQGHTGRLLRALLGLSLLFLVAHLALQICLHIVPRLDQLLGPSCSRWETLSRHIGVTRLDLKDIPNAIRLVAPDLGILVVSSVCLGICGRLARNTRQSPHPRELDDDERDVDASPTAGLQEAATLAPTRRSRLAARFRVTAHWLLVAAGRVLAVTLLALAGIAHPSALSSVYLLLFLALCTWWACHFPISTRGFSRLCVAVGCFGAGHLICLYCYQMPLAQALLPPAGIWARVLGLKDFVGPTNCSSPHALVLNTGLDWPVYASPGVLLLLCYATASLRKLRAYRPSGQRKEAAKGYEARELELAELDQWPQERESDQHVVPTAPDTEADNCIVHELTGQSSVLRRPVRPKRAEPREASPLHSLGHLIMDQSYVCALIAMMVWSITYHSWLTFVLLLWACLIWTVRSRHQLAMLCSPCILLYGMTLCCLRYVWAMDLRPELPTTLGPVSLRQLGLEHTRYPCLDLGAMLLYTLTFWLLLRQFVKEKLLKWAESPAALTEVTVADTEPTRTQTLLQSLGELVKGVYAKYWIYVCAGMFIVVSFAGRLVVYKIVYMFLFLLCLTLFQVYYSLWRKLLKAFWWLVVAYTMLVLIAVYTFQFQDFPAYWRNLTGFTDEQLGDLGLEQFSVSELFSSILVPGFFLLACILQLHYFHRPFMQLTDMEHVSLPGTRLPRWAHRQDAVSGTPLLREEQQEHQQQQQEEEEEEEDSRDEGLGVATPHQATQVPEGAAKWGLVAERLLELAAGFSDVLSRVQVFLRRLLELHVFKLVALYTVWVALKEVSVMNLLLVVLWAFALPYPRFRPMASCLSTVWTCVIIVCKMLYQLKVVNPQEYSSNCTEPFPNSTNLLPTEISQSLLYRGPVDPANWFGVRKGFPNLGYIQNHLQVLLLLVFEAIVYRRQEHYRRQHQLAPLPAQAVFASGTRQQLDQDLLGCLKYFINFFFYKFGLEICFLMAVNVIGQRMNFLVTLHGCWLVAILTRRHRQAIARLWPNYCLFLALFLLYQYLLCLGMPPALCIDYPWRWSRAVPMNSALIKWLYLPDFFRAPNSTNLISDFLLLLCASQQWQVFSAERTEEWQRMAGVNTDRLEPLRGEPNPVPNFIHCRSYLDMLKVAVFRYLFWLVLVVVFVTGATRISIFGLGYLLACFYLLLFGTALLQRDTRARLVLWDCLILYNVTVIISKNMLSLLACVFVEQMQTGFCWVIQLFSLVCTVKGYYDPKEMMDRDQDCLLPVEEAGIIWDSVCFFFLLLQRRVFLSHYYLHVRADLQATALLASRGFALYNAANLKSIDFHRRIEEKSLAQLKRQMERIRAKQEKHRQGRVDRSRPQDTLGPKDPGLEPGPDSPGGSSPPRRQWWRPWLDHATVIHSGDYFLFESDSEEEEEAVPEDPRPSAQSAFQLAYQAWVTNAQAVLRRRQQEQEQARQEQAGQLPTGGGPSQEVEPAEGPEEAAAGRSHVVQRVLSTAQFLWMLGQALVDELTRWLQEFTRHHGTMSDVLRAERYLLTQELLQGGEVHRGVLDQLYTSQAEATLPGPTEAPNAPSTVSSGLGAEEPLSSMTDDMGSPLSTGYHTRSGSEEAVTDPGEREAGASLYQGLMRTASELLLDRRLRIPELEEAELFAEGQGRALRLLRAVYQCVAAHSELLCYFIIILNHMVTASAGSLVLPVLVFLWAMLSIPRPSKRFWMTAIVFTEIAVVVKYLFQFGFFPWNSHVVLRRYENKPYFPPRILGLEKTDGYIKYDLVQLMALFFHRSQLLCYGLWDHEEDSPSKEHDKSGEEEQGAEEGPGVPAATTEDHIQVEARVGPTDGTPEPQVELRPRDTRRISLRFRRRKKEGPARKGAAAIEAEDREEEEGEEEKEAPTGREKRPSRSGGRVRAAGRRLQGFCLSLAQGTYRPLRRFFHDILHTKYRAATDVYALMFLADVVDFIIIIFGFWAFGKHSAATDITSSLSDDQVPEAFLVMLLIQFSTMVVDRALYLRKTVLGKLAFQVALVLAIHLWMFFILPAVTERMFNQNVVAQLWYFVKCIYFALSAYQIRCGYPTRILGNFLTKKYNHLNLFLFQGFRLVPFLVELRAVMDWVWTDTTLSLSSWMCVEDIYANIFIIKCSRETEKKYPQPKGQKKKKIVKYGMGGLIILFLIAIIWFPLLFMSLVRSVVGVVNQPIDVTVTLKLGGYEPLFTMSAQQPSIIPFTAQAYEELSRQFDPQPLAMQFISQYSPEDIVTAQIEGSSGALWRISPPSRAQMKRELYNGTADITLRFTWNFQRDLAKGGTVEYANEKHMLALAPNSTARRQLASLLEGTSDQSVVIPNLFPKYIRAPNGPEANPVKQLQPNEEADYLGVRIQLRREQGAGATGFLEWWVIELQECRTDCNLLPMVIFSDKVSPPSLGFLAGYGIMGLYVSIVLVIGKFVRGFFSEISHSIMFEELPCVDRILKLCQDIFLVRETRELELEEELYAKLIFLYRSPETMIKWTREKE", "sequence_length": 2521, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a9b84d3e2d82f009467950fe14d9a60f8a371e29ca16820ab2c02a643c9f574e", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q92508.json", "taxon_id": "9606", "uniprot_accession": "Q92508", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/mechanosensitive-monoatomic-cation-channel-activity-go0140135.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140135", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/mechanosensitive-monoatomic-cation-channel-activity-go0140135.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/piezo-non-specific-cation-channel-cap-domain-ipr031334.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/piezo-non-specific-cation-channel-cap-domain-ipr031334.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/piezo-thu9-and-anchor-domain-ipr056770.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056770", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/piezo-thu9-and-anchor-domain-ipr056770.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/piezo-tm1-24-ipr056769.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/piezo-tm1-24-ipr056769.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/piezo-tm25-28-ipr031805.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031805", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/piezo-tm25-28-ipr031805.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/piezo-transmembrane-helical-unit-ipr056768.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056768", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/piezo-transmembrane-helical-unit-ipr056768.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/piezo-cap-pf12166.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12166", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/piezo-cap-pf12166.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/piezo-thu9-anchor-pf24874.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24874", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/piezo-thu9-anchor-pf24874.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/piezo-tm1-24-pf24871.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24871", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/piezo-tm1-24-pf24871.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/piezo-tm25-28-pf15917.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15917", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/piezo-tm25-28-pf15917.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/thu-piezo1-pf23188.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23188", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/thu-piezo1-pf23188.yaml" } ], "pfam_ids": [ "PF12166", "PF15917", "PF23188", "PF24871", "PF24874" ], "protein_name": "Piezo-type mechanosensitive ion channel component 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASEVVCGLIFRLLLPICLAVACAFRYNGLSFVYLIYLLLIPLFSEPTKTTMQGHTGRLLKSLCFISLSFLLLHIIFHITLVSLEAQHRIAPGYNCSTWEKTFRQIGFESLKGADAGNGIRVFVPDIGMFIASLTIWLLCRNIVQKPVTDEAAQSNPEFENEELAEGEKIDSEEALIYEEDFNGGDGVEGELEESTKLKMFRRLASVASKLKEFIGNMITTAGKVVVTILLGSSGMMLPSLTSSVYFFVFLGLCTWWSWCRTFDPLLFSCLCVLLAIFTAGHLIGLYLYQFQFFQEAVPPNDYYARLFGIKSVIQTDCSSTWKIIVNPDLSWYHHANPILLLVMYYTLATLIRIWLQEPLVQDEGTKEEDKALACSPIQITAGRRRSLWYATHYPTDERKLLSMTQDDYKPSDGLLVTVNGNPVDYHTIHPSLPMENGPGKADLYSTPQYRWEPSDESSEKREEEEEEKEEFEEERSREEKRSIKVHAMVSVFQFIMKQSYICALIAMMAWSITYHSWLTFVLLIWSCTLWMIRNRRKYAMISSPFMVVYGNLLLILQYIWSFELPEIKKVPGFLEKKEPGELASKILFTITFWLLLRQHLTEQKALQEKEALLSEVKIGSQENEEKDEELQDIQVEGEPKEEEEEEAKEEKQERKKVEQEEAEEEDEQDIMKVLGNLVVAMFIKYWIYVCGGMFFFVSFEGKIVMYKIIYMVLFLFCVALYQVHYEWWRKILKYFWMSVVIYTMLVLIFIYTYQFENFPGLWQNMTGLKKEKLEDLGLKQFTVAELFTRIFIPTSFLLVCILHLHYFHDRFLELTDLKSIPSKEDNTIYRLAHPEGSLPDLTMMHLTASLEKPEVRKLAEPGEEKLEGYSEKAQKGDLGKDSEESEEDGEEEEESEEEEETSDLRNKWHLVIDRLTVLFLKFLEYFHKLQVFMWWILELHIIKIVSSYIIWVSVKEVSLFNYVFLISWAFALPYAKLRRLASSVCTVWTCVIIVCKMLYQLQTIKPENFSVNCSLPNENQTNIPFNELNKSLLYSAPIDPTEWVGLRKSSPLLVYLRNNLLMLAILAFEVTIYRHQEYYRGRNNLTAPVSRTIFHDITRLHLDDGLINCAKYFINYFFYKFGLETCFLMSVNVIGQRMDFYAMIHACWLIAVLYRRRRKAIAEIWPKYCCFLACIITFQYFICIGIPPAPCRDYPWRFKGASFNDNIIKWLYFPDFIVRPNPVFLVYDFMLLLCASLQRQIFEDENKAAVRIMAGDNVEICMNLDAASFSQHNPVPDFIHCRSYLDMSKVIIFSYLFWFVLTIIFITGTTRISIFCMGYLVACFYFLLFGGDLLLKPIKSILRYWDWLIAYNVFVITMKNILSIGACGYIGTLVHNSCWLIQAFSLACTVKGYQMPAANSPCTLPSGEAGIIWDSICFAFLLLQRRVFMSYYFLHVVADIKASQILASRGAELFQATIVKAVKARIEEEKKSMDQLKRQMDRIKARQQKYKKGKERMLSLTQEPGEGQDMQKLSEEDDEREADKQKAKGKKKQWWRPWVDHASMVRSGDYYLFETDSEEEEEEELKKEDEEPPRRSAFQFVYQAWITDPKTALRQRHKEKKRSAREERKRRRKGSKEGPVEWEDREDEPIKKKSDGPDNIIKRIFNILKFTWVLFLATVDSFTTWLNSISREHIDISTVLRIERCMLTREIKKGNVPTRESIHMYYQNHIMNLSRESGLDTIDEHPGAASGAQTAHRMDSLDSHDSISSEPTQCTMLYSRQGTTETIEEVEAEQEEEAGSTAPEPREAKEYEATGYDVGAMGAEEASLTPEEELTQFSTLDGDVEAPPSYSKAVSFEHLSFGSQDDSAGKNRMAVSPDDSRTDKLGSSILPPLTHELTASELLLKKMFHDDELEESEKFYVGQPRFLLLFYAMYNTLVARSEMVCYFVIILNHMVSASMITLLLPILIFLWAMLSVPRPSRRFWMMAIVYTEVAIVVKYFFQFGFFPWNKNVEVNKDKPYHPPNIIGVEKKEGYVLYDLIQLLALFFHRSILKCHGLWDEDDMTESGMAREESDDELSLGHGRRDSSDSLKSINLAASVESVHVTFPEQQTAVRRKRSGSSSEPSQRSSFSSNRSQRGSTSTRNSSQKGSSVLSIKQKGKRELYMEKLQEHLIKAKAFTIKKTLEIYVPIKQFFYNLIHPEYSAVTDVYVLMFLADTVDFIIIVFGFWAFGKHSAAADITSSLSEDQVPGPFLVMVLIQFGTMVVDRALYLRKTVLGKVIFQVILVFGIHFWMFFILPGVTERKFSQNLVAQLWYFVKCVYFGLSAYQIRCGYPTRVLGNFLTKSYNYVNLFLFQGFRLVPFLTELRAVMDWVWTDTTLSLSSWICVEDIYAHIFILKCWRESEKRYPQPRGQKKKKVVKYGMGGMIIVLLICIVWFPLLFMSLIKSVAGVINQPLDVSVTITLGGYQPIFTMSAQQSQLKVMDQQSFNKFIQAFSRDTGAMQFLENYEKEDITVAELEGNSNSLWTISPPSKQKMIHELLDPNSSFSVVFSWSIQRNLSLGAKSEIATDKLSFPLKNITRKNIAKMIAGNSTESSKTPVTIEKIYPYYVKAPSDSNSKPIKQLLSENNFMDITIILSRDNTTKYNSEWWVLNLTGNRIYNPNSQALELVVFNDKVSPPSLGFLAGYGIMGLYASVVLVIGKFVREFFSGISHSIMFEELPNVDRILKLCTDIFLVRETGELELEEDLYAKLIFLYRSPETMIKWTREKTN", "sequence_length": 2752, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "285ce38f8bf4b13889ce7e6cee4a8d2d8893ef9299bd6bd96ae1d57d6305053b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H5I5.json", "taxon_id": "9606", "uniprot_accession": "Q9H5I5", "uniprot_release": "2026_03" } ], "pfam_id": "PF12166", "short_name": "Piezo_cap", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/arm-dna-bind-2-pf12167.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12167", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/arm-dna-bind-2-pf12167.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P76056", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00589", "PF12167" ], "protein_name": "Prophage integrase IntR", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": 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"sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76056.json", "taxon_id": "83333", "uniprot_accession": "P76056", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/arm-dna-bind-2-pf12167.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12167", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/arm-dna-bind-2-pf12167.yaml" } ], "pfam_ids": [ "PF00589", "PF12167" ], "protein_name": "Putative defective protein IntQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, 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"Pseudomonas fluorescens", "origins": [ { "cited_uniprot_accession": "Q51726", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/polyketides/2-4-diacetylphloroglucinol.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:78688", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/polyketides/2-4-diacetylphloroglucinol.yaml" } ], "pfam_ids": [ "PF01796", "PF12172" ], "protein_name": "PhlB", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MSLYPEQIHRMTTASMLREWREHGGKYRLEGSRCQDCEEIFFPRRTVCGACNSLNVEPYRCARTGTIQVSAHAENPILAAMGYGETVPRFMAMVRLDDGLVIASEIVDVVDPRQVVTGAPVRMVIRKHVRESNLAWQYAYKFVLAK", "sequence_length": 146, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b91eb5b2af4e34354901ff527ecd4e10f2dd38e0abae2544c7ce7bdc5eef6a1", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ob-chsh2-c-pf01796.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zf-chsh2-pf12172.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-chsh2-pf12172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/6-10-30-10-6-10-30-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.10.30.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-10-30-10-6-10-30-10.yaml" } ], "pfam_ids": [ "PF01796", "PF12172" ], "protein_name": "DUF35 domain-containing scaffold protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGIKYLLRDKMVVRSWRHIKERYCLIGVRCKNCGTVYFPSREICPKCRRKTEFEEIKLSGKGKVYTYSVVHVAPKDFEKQAPYVIAIIELEEGARITGQIVDCKPEDVYIGMQVEAVFRRIKEDGDDGVITYGYKFKPIEN", "sequence_length": 141, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5ec6f10f7473f460c65c345a1db1dbd42b228baec8203da9684f9c0e3ca45ac0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q58947.json", "taxon_id": "243232", "uniprot_accession": "Q58947", "uniprot_release": "2026_03" } ], "pfam_id": "PF12172", "short_name": "zf-ChsH2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12182", "short_name": "DUF3642", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12200", "short_name": "DUF3597", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12204", "short_name": "DUF3598_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3599-pf12206.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12206", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3599-pf12206.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/xkdh-like-superfamily-ipr038667.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038667", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/xkdh-like-superfamily-ipr038667.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf3599-2-40-10-370.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.40.10.370", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf3599-2-40-10-370.yaml" } ], "pfam_ids": [ "PF12206" ], "protein_name": "Uncharacterized protein YqbH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSYQSLLTHRCDIYHLQEKKENRKQKFGVPVEDVQPVFSYPDEPDIENQPCYFTEKSQSIIQQESNVSIYQSFLVHFPATADIRVNDRAVWDGTAYKLQKPRKIRNHHWEVTAVREVEYL", "sequence_length": 120, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "04f6cecaff556bc9f9f73c36c12a42b3fd632202b9aced73cac75e53d7ffd200", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P45924.json", "taxon_id": "224308", "uniprot_accession": "P45924", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3599-pf12206.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12206", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3599-pf12206.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/xkdh-like-superfamily-ipr038667.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038667", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/xkdh-like-superfamily-ipr038667.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf3599-2-40-10-370.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.40.10.370", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf3599-2-40-10-370.yaml" } ], "pfam_ids": [ "PF12206" ], "protein_name": "Phage-like element PBSX protein XkdH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSYRQMLIHRCDIYHEAAQAPSAGRFGIPADRLQPVISYPDTPDEQDVPCYFTEKTQQLIQEEPDQTVYHSFLVHFPLSADIRVNDKIIWENHKYILKLPKRIRHHHWEVVAVRDESL", "sequence_length": 118, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1ac0d85d207b51114cf5e4205e28aa8de5ec78d8400a292c666010b2b180a31d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54328.json", "taxon_id": "224308", "uniprot_accession": "P54328", "uniprot_release": "2026_03" } ], "pfam_id": "PF12206", "short_name": "DUF3599", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12207", "short_name": "DUF3600", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12208", "short_name": "DUF3601", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3602-pf12223.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12223", "section": "canonical_examples", "url": 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[] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12225", "short_name": "DUF5981", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Geobacillus thermodenitrificans (strain NG80-2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3603-pf12227.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12227", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3603-pf12227.yaml" } ], "pfam_ids": [ "PF12227" ], "protein_name": "UPF0736 protein GTNG_0688", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLYLHDIWVNWFEGEENGYNVCHFHEWRKDDQIELLDQVPLLKVSPALFHYIENSLSDLPKPLLDDVYQKAYIRKNHERIQLDYCFIVTDGVGILAVDTIGYHIPIRKSRLIPRQEQLVYEMAAEAEEQKYPLPKYEKEYHILSPAPELMCGLTRKERQLKQLLFMALDQLYSTKNSAEVRYWYTEWAPEKYSDIQKMSFEEAWERLYEETKYGWSERHEQLCENLIKGQPFFEKLWETQQEPKVN", "sequence_length": 246, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ac24801935f886db22097a75a05ce52191c4afaaebbf2498adc0e7d65493b0c6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4IL64.json", "taxon_id": "420246", "uniprot_accession": "A4IL64", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3603-pf12227.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12227", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3603-pf12227.yaml" } ], "pfam_ids": [ "PF12227" ], "protein_name": "UPF0736 protein RBAM_011410", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLFLHDVWVNWFEGEENGYNVCHFHEWRKEDTVELLDQTPLLRVPSVLFHYIENDLSELPKELLDQVHQKSYVRKNHERTKLEYCFVVTDGIGIIAVDTIGYTIPVRKSRLIPRQEQLVYEMVKDVEPESFQFEPAQLESSKEYHILSLAPEHVRGLTRKERQIKQLMFMALDQLKGLKNRAEIVYWYTEWNPHMYEQIKRMSFEEIWDMLYNETIEGWSDKHLAFCENLIKGQPFFEKLWEMEQESKVN", "sequence_length": 250, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a690b8dcbec135134f5be457f40ab2bad7e9cd5b4938d596c0bfc3adf2e68ab6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A7Z3C9.json", "taxon_id": "326423", "uniprot_accession": "A7Z3C9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3603-pf12227.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12227", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3603-pf12227.yaml" } ], "pfam_ids": [ "PF12227" ], "protein_name": "UPF0736 protein YjbA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLFLHDVWVNWFEGEENGYNVCHFHEWRKEDTVELLDQVPLLRVPSVLFHYIENDLSELPKGLLEDVHQKSYIRKNHERTKLEYCFVVTDGIGILAVDTIGYTIPVRKSRLIPRQEQLVYEMVKDVEPETYEFEPKKLESSKEYHILSLAPEHVRGLTRKERQIKQLMFMALDQLKGLKNRAEIGYWYTEWNPHMYEQIKRMSFEEIWDMLYNETIEGWSDKHLAFCENLIKGQPFFEKLWEMENESKVN", "sequence_length": 250, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1430520c7d0bdd10adfa24c2b01ced1a1926b0ed4702185279fb1672fd623a68", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31597.json", "taxon_id": "224308", "uniprot_accession": "O31597", "uniprot_release": "2026_03" } ], "pfam_id": "PF12227", "short_name": "DUF3603", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3604-pf12228.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3604-pf12228.yaml" } ], "pfam_ids": [ "PF12228" ], "protein_name": "Uncharacterized protein CT_425", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRSVCYVTPSVARAGQISTWRFEYSSANFLPEGTLLKFDLGIDGRPIDWEIPSTDLSQPCNTIYLETPSEDIVAAKAVYAPGGYIPTFEFTLPCDVEAGDTFSIILGSSPNFPQEDSSGNGAQLFTQRRKPFSLYVDPSGKGSFEDPDIFTMDIRGNVLKNIRIFAPSYVIKNKRFDITVRFEDEFGNLTNFSPEETHIELSYEHLRENLNWQLFIPETGFVILPNLYFNEPGIYRIQLRNQATKEVFTSAPIKCFAETSSHLLWGLLHGESERVDSEGNIESCLRYFRDDCALNFFATSSFEIQDGLTPETIKTINQTVADFNEEDRFIALSGAQYLSEEPGEGIREVLLMKEPKSPGKHKECKLFPLSKLYKQSTSHELISIPSFTASKKFGYNFNNFHPEFERVVEIYNAWGCSERTEAEGNPFPIKGSIDSENPEGTVLSALKRNLRFGFVAGGLDDRNLYNHFFDSDQQQYSPGLTAVICNKYSRDSLLEALYQRQCYATTGQRIIVNFQITSAPMGSELSTAIKPGLVINRHISGYVAGTAKIASIEIIRNEDILHTFHPDGNNFEYEYDDLSPFAQVTLKDPQNGAPFAFYYLRVTQENGAMAWSSPIWIDLN", "sequence_length": 621, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3b27abce59cb25ccd76ad630b02abc4e2b32ad18b610f13ee2c7b96879239686", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O84432.json", "taxon_id": "272561", "uniprot_accession": "O84432", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia muridarum (strain MoPn / Nigg)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3604-pf12228.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3604-pf12228.yaml" } ], "pfam_ids": [ "PF12228" ], "protein_name": "Uncharacterized protein TC_0708", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRSVCYVTPSVARAGQISTWRFEYSSANFLPEGTLLKFDLGIDGRPIDWEIPSTDLSQPCNTIYLETPSESIVTAKAVYAPGSYIPTFEFILPCEIEAGDTFSIILGSSPNFPQEDASGNGAQLFTQRRKPFSLYVDPTGKGNFEDPDIFTIDIRGNVLKNIRIFAPSYVVKNKRFDITVRFEDEFGNLTNFSPEETQIELSYEHLRENLSWQLFIPETGFVILPNLYFNEPGIYRIQLRNQATKEIFTSAPIKCFTETSPHLLWGLLHGESERVDSEGNIESCLRYFRDDCALNFFATSSFEIQDGLTPETIKSINQTVSDFNEEDRFIALSGAQYVSEEPGEGIREVLLIKEPKSPGKHKECKLFPLSKLYKQSTSHELISIPSFTASKKFGCDFQNFHAEFERVVEIYNAWGCSERTEAEGNPFPIKGSIDSENPEGTILSALKRNLRFGFVAGGLDDRNLYSNFFDSDQQQYSPGLTAVICNKYSRDSLLEALYQRQCYATTGQRIIVSFQITSAPMGSELSTAIKPGLMINRHISGYVAGTAKISTIEIIRNGDTLHTFYPDGNNFEYEYDDLTPFAQATLADPKNGAPFAFYYLRVTQENGAMAWSSPIWIDLN", "sequence_length": 621, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "85a9eb2778e08b46a2dfadf9ed27a1bbc40811d3e78f54b595fff0deee68b795", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9PJW8.json", "taxon_id": "243161", "uniprot_accession": "Q9PJW8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3604-pf12228.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3604-pf12228.yaml" } ], "pfam_ids": [ "PF12228" ], "protein_name": "Uncharacterized protein CPn_0512/CP_0242/CPj0512/CpB0533", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRSVCYVNPSIARAGQISTWKFLYSLATPLPAGTKCKFDLAGSGKPTDWEAPATDLSQTRNVIYAEMPEGEIIEATAIPVKDNPVPQFEFTLPYELQVGETLTIVMGASPNHPQVDDAGNGAQLFAQRRKPFYLYIDPTGEGNYDEPDVFSMDIRGNVLKKIEIFTPSYVVKNKRFDITVRFEDEFGNLTNFSPEETRIELSYEHLRENLNWQLFIPETGFVILPNLYFNEPGIYRIQLKNLSTQEIFISAPIKCFADSAPNLMWGLLHGESERVDSEENIETCMRYFRDDRALNFYASSSFENQENLSPDIWKLINQTVSDFNEEDRFITLSGFQYSGEPHLEGVRHILHTKETKSHSKHKEYKHIPLAKLYKSTVNHDMISIPSFTASKEHGFDFENFYPEFERVVEIYNAWGSSETTAALNNPFPIQGKDSEDPRGTVIEGLKKNLRFGFVAGGLDDRGIYKDYFDSPQVQYSPGLTAIICNKYTRESLVEALFARHCYATTGPRIVLSFNITSAPMGSELSTGSKPGLNVNRHISGHVAGTALLKTVEIIRNGEVLHTFFPDSNNLDYEYDDMVPLSSVTLKDPNGKAPFVFYYLRVTQADNAMAWSSPIWVDLN", "sequence_length": 620, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b0c9373e26988e14b3e5d2ed6bdd57078495792e50d7e6b5aeda07b4ce40c102", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z840.json", "taxon_id": "83558", "uniprot_accession": "Q9Z840", "uniprot_release": "2026_03" } ], "pfam_id": "PF12228", "short_name": "DUF3604", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3605-pf12239.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3605-pf12239.yaml" } ], "pfam_ids": [ "PF12239" ], "protein_name": "Uncharacterized protein YPL067C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQQDIVNDHQEEAQGWKWEQIKEIIESGELARLKRSRQMTDKYHEHKKRTAGLDMNQYVLQKLGWSLDEPQLENAAAKAFSSSTLYAVRANDFPYNFEPGVVHLVLWSKVALPVHSPDKAVREAARARMNAFLQAQPLLRPLLSSGHVAWFVNYPELQSVARIFHAHVLLFFPRERYSAEQVKTTVDDILSHGFEPLA", "sequence_length": 198, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d0fca99c180c0d63c63ae0eef260a72e4308598892689383c6000e0aab7cc013", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q02754.json", "taxon_id": "559292", "uniprot_accession": "Q02754", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Candida albicans (strain SC5314 / ATCC MYA-2876)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3605-pf12239.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3605-pf12239.yaml" } ], "pfam_ids": [ "PF12239" ], "protein_name": "N-acetylglucosamine-induced protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNPATIITNFNNSQLQTPPTSPVSFDKYYTYYNIQLEQSTLMPQPSKIKNGDPFTWSDIQFIIKSNQLEIFARSRQQTIKYHKFKQWLKDNKLSINDYLLDYELHWKESELREQQHELVSDKEYSIDYPEDLIFHNPNDISILYNKFPYYFEPNVKHICIWSKLKIPVDKNSEVGDISVMTKKLINRYLEKTFVAKGISWDQIVWFKNWLSLQSVRSISHIHVILKDVDDKFVDELISGGSGEVLTLDDYRNLE", "sequence_length": 254, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1ddafffb9139c278aab0e8822c09dde29ab6fc81bcae00585aa5351c7298694b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q59VM7.json", "taxon_id": "237561", "uniprot_accession": "Q59VM7", "uniprot_release": "2026_03" } ], "pfam_id": "PF12239", "short_name": "DUF3605", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12244", "short_name": "DUF3606", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12245", "short_name": "Big_3_2", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/iml1-n-fung-pf24438.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24438", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/iml1-n-fung-pf24438.yaml" } ], "pfam_ids": [ "PF00610", "PF12257", "PF19418", "PF24438", "PF29595" ], "protein_name": "Vacuolar membrane-associated protein iml1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLRGPMKRSHLRQVSAPSVDDLATSSQAQAQSHPRDGGPYNDEHGQDFQSTLDARNIRLSTTSLERRQVSLWVHDETFSREEILFNQAAFSDLGVGPGDVIEILPVRSPGDSLHSIKSDLGLRALRDSYVETGPALLPDPMSKFKTPLQSRCLFVVKPLPQEIKARHPKLEISVTSSVANIFGFKNRTLVHIDVVDRAQCSASHVDIAFRDQFLVRSDMWRLVMSELAEKIIYKGQKIVFMGSIKATVKNIFIREKKVLSGYFSPHTIPVFRSESAKYVLFIQMSREMWDFDSEGTGDILFSRVINGFLPELFKRWANSEAKHLVTIVLFTRVEYDVSAIGAPLPLSSETLRCISSPNHVPTRDFYRVVVNDMASGHWTAILDELKKDFRTFLRDVSTLKMDCADTPTLDGVKVAPKNKAATIAGRPSTALRGNILEAIHLASAHLAYDHIDRDMVHTGTSIIVITPGSGVFEVSYESLSSTSEALANRGIAIDLVCLSPMPLHSVPLFKYKAPAQRSSSSSFCEFNSSGYSPEMRHSFSFASRTPHLSPKSAAHGSFSRGTAHKEHAASRSDEWNYGIPHWLDISYWNPDTYREARRILKKDLNAPIPFTVTKQSKTFVPRVRMYEIQMMGVMESEQSNISIPYLLEGEGIHRAPSLSLGLSPSALSSTRASYRRNPYKLPLSDSLRPEPFLQGLSNPKDVMLARSKKAPKAVLAWMEQYDDAVFQPFAKRRHQRKPSKPKRLSEPDVQVSGAHERLSARSVLRLREHETNANSSERPYPTRTIPRVAETSLSAPQTPVPSKSASPKKPALKPPSAGKAPRISRTISFALRGLSATPPRALASTEVNVEHASALPTSSPKLLPGPFPDTRSVDSFSGSDSASISTVIDTSLRPASPHKTPQSRAIMPSRPISIKVPPRQPSEDAEPGDRAVIPESYSTTSTAIPFNEHHRRDSHTRTSGPRFEMTVNGGSRDSSIKSPQNKALAPWVRSINPCNTSREVLRDTSWFGRWQHAYPRPPHVAVVKWKSLKSPAILPLTTEEFPTAKELGTDYLQTPYRVFPNDDPEGFEVPKTRGILLREMISLRLSHGFQIVIGKHVAEVSGQHALETLNVFNTASLERNGATIFLSKGNSIHRLVCVDGGEIEVTRFTHRTSSALAAGRRDGFSLYSPAMRTILSPEYELKNIKLDPTAEEYNWNYADNYVAGHRDYLFNPAQQLQFWRVRYVLIPMHLHVNTRRHLQSFNEDNEEEIHLLGINQLTHIWQRHKYIPPEEKRFESSNKKKEQNPLNIMYQTRNPSEVVAAELDRILLSDPGLDSSPAQLLPESELLKRSSISLSSLAHIIQGDKGVRMMDRRWHWRLHYNCFIGFELTTWLLQNFRDIDSREEAVDFGNELMKHGLFQHVEKRHNFRDGNYFYQISSEHRISRPESRGGWFPQKRSDKGVPSTPASNNAKDSPLSGHARSDSLEDGPPHTPATPSKSKNKATIMLSKMMKYDVDPRKRSNRPEVIDLHYDRLHNPDNCFHFELSWMNTTPKLIEDTVLSWAATAEKFGLKLVQVPIAEASAISRTQPFRKPYRVSLKIPPPKGPVPTLFNTASFSQPGFTDMHYYHKAMLRKFDFVLDFEARSAFPADVGVSYSWGTPDYQYPQYIHRSGSTLVQLTDEGDFLFLANRLVSTRAAASREMPRYERMDRAEHLRTRAATHDPLDRLSPRLSPIVRPLHEIGSPQVQSSIDSAHLYRAPELIILGFAEFCNDEGRLEQFYKESHARPVSTKVGPATTTLMDSSIPSLELPASVVSHHLSHPPALVARASVDGSISSIDVRVRARNDSVSYKGSPRSGSLRPLNLS", "sequence_length": 1845, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "057f434fbb001428358a74937a047e88724f93ffd53367c748e6ce9265be343c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1CEE0.json", "taxon_id": "344612", "uniprot_accession": "A1CEE0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/iml1-n-fung-pf24438.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24438", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/iml1-n-fung-pf24438.yaml" } ], "pfam_ids": [ "PF00610", "PF12257", "PF19418", "PF24438", "PF29595" ], "protein_name": "Vacuolar membrane-associated protein iml1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAITLNLWTHESSLFPNDAVLNYDLVPSAKPGDIFEIRAQNGDEIALQHNHSSTGKLHAKREKEPVYLMPSPLTDDLKRRHPNLQLSVVSHISSLLNIKNREPVVVKICEDKTNLEAEHVVIFFRDQFISRSDMWKLFRELCGKCVYLKQRVSFIGDVPGEIRCIWRKGKKCHSAYISERTKPIFRSESARFLIFIQMSEEMWHFEEDGELNYNKAIDGFLPDLFSFWRDLGTHHLVSIILFTRVEYSHHGPMCVWQPRSQKNSEKGSSIYPQNSFNASIDNEGGPYEDFFKVVVDNVSSRDWQPVLANLKLELAKFRQDVIVRKIKDENGREIEYICGRMTGSQEGNFLEVINMAVFQFQSDYIDRDLSRTGTSIIIVTPGTGLYEVNEKMLHLTSKSLLNTVVGMDIVSLGKVPLFLTPIVRYKNPVKNKKRSQLTSRISSSVSPSNVIPNSLTSSVSNFSVSSFLNNLKEDTEWLYTFPIGCNISFYSTTEMRSLRSPWENLMREHQFEPTAKMHELQMMGVLEAESAKISIPLLQSDPLLKGSVFSEEVQEDYDERQFTGEAAVSANDVLSSSSPRHFSSHTPVNVDKSSYLEMNGHSLSTVISGKESISSFGAKVDDLKSTSKESARQFGKSALTERLQKLAGNSSNVSSSLQTSSSNKSSLLTKKSSFPALLKGFLALPATVTTSANPLGFKSTIQRPIPIKNNEDSDSCKAFSQAPPIATKKPPTFLKPNSPEYAKTVIPKSSTNLENEYQTPWKIIQNPFKLKETTADNDPVSLRWEHLYMKVQDVRKFNWLSMCTPGALPLTFSYFPSEEELNDKFEEYTYTIGIDPEFTQMNQQELLAEMICQRLSRGYQIVVNPAAAVSYSGNPKANKAGTITDFSRSVNNQRNGHLTVGSDAVCLSLGDSQFHRLSCDSVGYNIEVKRYVKKVSGQGKMRYDYNFWSKNECKYVKSNITFSANDSANYNWNYVDQLICGFETYLPDSVKYWRARFVLLPMSTTSTHVFQKYQLLDHADALSDEEFRVEGIYKLSELLYKGKIDPMNDSNNKTPNTSPAELLGIKFTTLPMAQYIHSELEALRLDSSRNEQSLFMPNKRLDCSADLHTIAKEIQGPGGPKIDDITWHYRIYENCFLGSEFVSWLANTFIGINTREEALKYGNKLLSLGLFDHALKKHPLLDGYYVYRISPDYSIKPVSNRPYRSWFSRKKDSGQKHLDNKIITESEAGPSRLELSRRILFNADVEKKNGKSETVTVHYDLLHNPASCYHIRIEWLLATASVIEKLLQSWSRILERYGLKLVEAPIHEIAAVGELNPFDQVSIISLALDPPPIPERAPLVNDPVNYSKNWWNVKILEHFDFILDTEAASTFPKSITAVYSWGKPNFRYVQYIHRTGTVLVQIDDDQRFLWLPNRLHNSKVSKLSFTKSNKSTLNPNLKETAEELERKFREFCSNKDELDQFYGIVNHASDDRRSIYSSASTHASNASADDASNVNV", "sequence_length": 1496, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a2bf71b46449ef7956819378b4062fe17aed63cf450e993eb47826b047fac77c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O74788.json", "taxon_id": "284812", "uniprot_accession": "O74788", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/dep-dishevelled-egl-10-and-pleckstrin-domain-found-in-depdc5-like-prot-cd04449.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd04449", "section": "canonical_examples", "url": 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"data/traits/sequence/domain/interpro/iml1-depdc5-n-terminal-double-psi-beta-barrel-domain-ipr055213.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/iml1-depdc5-n-terminal-double-psi-beta-barrel-domain-ipr055213.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vacuolar-membrane-associated-protein-iml1-n-terminal-domain-ipr048255.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048255", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vacuolar-membrane-associated-protein-iml1-n-terminal-domain-ipr048255.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/iml1-n-pf23013.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23013", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/iml1-n-pf23013.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vwa-iml1-pf12257.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vwa-iml1-pf12257.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/depdc5-ctd-pf19418.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19418", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/depdc5-ctd-pf19418.yaml" } ], "pfam_ids": [ "PF00610", "PF12257", "PF19418", "PF23013", "PF29595" ], "protein_name": "GATOR1 complex protein DEPDC5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRTTKVYKLVIHKKGFGGSDDELVVNPKVFPHIKLGDIVEIAHPNDEYSPLLLQVKSLKEDLQKETISVDQTVTQVFRLRPYQDVYVNVVDPKDVTLDLVELTFKDQYIGRGDMWRLKKSLVSTCAYITQKVEFAGIRAQAGELWVKNEKVMCGYISEETRVVFRSTSAMVYIFIQMSCEMWDFDIYGDLYFEKAVNGFLADLFTKWKEKNCSHEVTVVLFSRTFYDAKSIDEFPEINRASIQEDHKGRFYEDFYKVVVQNERREEWTSLLVTIKKLFIQYPVLVRLEQAGGFPQGDNSTSAQGNYLEAINLSFNVFDKHYINRNFDRTGQMSVVITPGVGVFEVDRLLMILTKQRMIDNGIGVDLVCMGEQPLHAVPLFKLHNRSVPRDSRLGDDYNIPHWINHSFYTSKSQLFCNSFTPRIKLAGKKSASEKTKNGRDTSLGTPKESENTLPIQVDYDAYDAQVFRLPGPSRAQRLATCRSVREQENHSRKSASSCDVSSSPSLPSRALPTEEVRSQASDDSSLGKSTNILMIPNPHLHQYEVSSSLGYTSTRDVLENMIEPPQRDSSAPGRFHVGSAESMLHVRPGGYTPQRALINPFAPSRMPMKLTSNRRRWMHTFPVGPSGEAIQIHHQTRQNMAELQGSRQRDPTHSSAELLELAYHEAAGRHSTSRQPGDSMSLNFSGTEELSVSLLSNSSTGVNPRTQNKDSLEDSVSTSPDPMPGFCCTVGVDWKSLTTPACLPLTTDYFPDRQGLQNDYTEGCYDLLPEADMDRRDEEGVQMTAQQVFEEFICQRLMQGYQIIVQPKTQKPNTTVPPPLSSSPLYSRGLVSRNRPEEEGQYWLSMGRTFHKVTLKDKMITVTRYLPKYPYESAQIHYTYSLCPSHSDSEFVSCWVDFCHERLEEYKWNYLDQYICSAGSEDFSLIESLKFWRTRFLLLPACVTATKRITEGEVHCDIYGDKPRADEDEWQLLDGFIRFVEGLNRIRRRHRSDRMIRKGTAMKGLQMTGPISAHSLEAAGPPVGKKGTSALSALLEMEASQKSLGEQQTTVHGKSSTQPAENSSVAMTPTYVDSPRKDGAFFMEFVRSPRTASSAFYPQASVDQTAPLVLDSTSLGVSTGQPMDRGNNQTFGNSQNIEQAFPSANSGDYSSQQHVASSLTSSSTLVEILEAMKHPSTGVQLLSEQKGLSPCCFISAEVVHWLMNNVEGVQTQAMGIDIMQKMLEEQLITHASGEAWRTFIYGFYFYKIVMDKEPERVAMQQPSAPWYTAGADDFASFQRKWFEVAFVAEELVHSEIPAFLLPWLPSRPASYASRHSSFSRSFGGRSQAAALLAATVPEQRTVTLDVDVNNRTDRLEWCSCYYHGNFSLNAAFEIKLHWMAVTATVLFEMVQGWHRKATSCGFLLVPVLEGPFALPSYLYGDPLRAQLFIPLNLSCLLKEGSEHLFDSFEPETYWDRMHLFQEAIAHRFGFVQDKYSVSAFNFPAENKPQYIHVTGTVFLQLPYSKRKFSGQQRRRRNSTSSTNQNMFCEERVGYNWAYNTMLTKTWRSSATGDEKFADRLLKDFTDFCINRDNRLVTFWTNCLEKMHASAP", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/iml1-n-fung-pf24438.yaml" } ], "pfam_ids": [ "PF00610", "PF12257", "PF24438", "PF29595" ], "protein_name": "Vacuolar membrane-associated protein IML1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHDARIFNSSSNKTMNQNDEAGKSKIKPLRTNQRRVIGASKSSSHMGSHVGTTLIIGKNSHSTSHGVRNNSPENTIVIGRRNFSDGQIEYTKPASHSNKFKKDSILRDPNIDSNVEASKKLSEQIQLTVWFHEPRTSTEDVIIDASVIPGLKEGDICELVPLNTFKPHKKPKRLIFIIKNQSLLSKSSSLHTSNNNNNAGATTSTLSANNNNTTKTKTNFQISLISNPLQNLMDLPPRSLVQLKTILDVESIEADTIEIFIKDINLSRDLMWTFSSSLVGTCVYSEKRLTFLSNRTGVVKKIYKNGNELFSALICEKTKVVFRSKSAKLVFLVQLSREMWHFEETGEIMFHKLVNTLFPKIFKKWRDKNTHHAITIVLFTSVDLTNIPWTSLGQGERPNNRRDYFRVVVDQVSIFHWDRIMANLRLEFANFKRDIMLNCQPENNGKFTMAGQSLPSVKGNVLEAINVGIHLVNDRFKNTDLKHSLNHFILVTPGTGLFDVDYSLMHETSKKMLSIDCALDIVCLSQPPLHIVPLFRYRDPSKDGQISHCVPHWCDISFYKDSTANSTQWIPHCKIYELQMMGVMENEINDVKIERYRVPNEAKSMVEAMDKYDSDVFKPVNKDSDSKVTRELSSSPEQSTINSKTGTPKENSKPLSLIWNNRTSLLPNSSTARIDVSTTNSSVLGTVANSGKDVSALSSLYTLNKTSADKSVVHAPSIRADSRKGVKENVSRDRKEFNEITRTKLRPRLQKTEEFYKSDDSVSNTSKSRDILDSKSRNKQSSTKVEEEFETLTNLLWTEIRNPSKESHSDMLSFLRLSRWNDIFPSNIKRRLVKWRSFESPAALPVTTSIFPSTKQLETDYSFQIYSVFLNSENDLEIESTHDLMREMIQLRLLLGFQICYSDQVKKFESSRKPGGNAESLIKYFPKGSCYGSRIYMSLDDEIHRISCDYNGNLYVQMYRKIEELKHSRLLGSKDYRQQSYVPLIRTRYVDEYAPAKFDFINTKPLKYNWNQFDQLIAGYDDAIPPEKRQFHKMKFVVLPANIPKNAYFISNENLTDEEIRVEGLRKLIGLIERGKFVKSDDKESKRKEEILPEISFYTGNLYEFLSDQAETYDATGNEPSNSLMLGENMRFTKSIKLSQLAQELQSPTGVRLVDRTWHFKRHLHCFLGNELVSWFIECFEDIDNRNDATSYGQSLMDRGMIKHVESRHGFLDGYYFYTFEGEYIDKNYKPERLNSGWFNRKKNSSEKGSAVTSPTYTRNNSDTESAKSPVFPVQDNLDLRKITSNSIGQHMYDSETSSMAGSSTKTKQKKKFILSRSVKFNADPLKKSFRPEIVTVHYDRVHNPEHCYHIRLQWLNTTKKFIDDAILNWSRLCERHGLKLVETPWLELCTIPQVNPFHSFVDLKLVINPWTDPEFSDPNILKDNKFYYHLYLMKKSDFLLDNRSTVFFSKDHIEISYSWGKPIFQYAQYIHKTGAYIVELRDNGDLFLAPNNIHITRLNTSLSSVPEQDYLKSYKMDSQKVMLKFRSACTNEKILRGIFKEAKENWREKCSEVVLPAIN", "sequence_length": 1560, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "635f999904ee8078be7b1bf9261e9ff473778332feab5c7f00d3f287e89cd94e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6BN00.json", "taxon_id": "284592", "uniprot_accession": "Q6BN00", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/dep-dishevelled-egl-10-and-pleckstrin-domain-found-in-depdc5-like-prot-cd04449.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd04449", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/dep-dishevelled-egl-10-and-pleckstrin-domain-found-in-depdc5-like-prot-cd04449.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/depdc5-c-terminal-ipr045838.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/depdc5-c-terminal-ipr045838.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/iml1-depdc5-n-terminal-double-psi-beta-barrel-domain-ipr055213.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/iml1-depdc5-n-terminal-double-psi-beta-barrel-domain-ipr055213.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vacuolar-membrane-associated-protein-iml1-n-terminal-domain-ipr048255.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048255", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vacuolar-membrane-associated-protein-iml1-n-terminal-domain-ipr048255.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/iml1-n-pf23013.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23013", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/iml1-n-pf23013.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vwa-iml1-pf12257.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vwa-iml1-pf12257.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/depdc5-ctd-pf19418.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19418", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/depdc5-ctd-pf19418.yaml" } ], "pfam_ids": [ "PF12257", "PF19418", "PF23013", "PF29595" ], "protein_name": "GATOR complex protein Iml1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLYKLNTHTRGCNKSYDADLVMNLKDHPNANVGDVVEIYAPDEENGTHLLLQITEFNGSCGRDVISIESGIANAFKMRPYSNVVMRIVKPADVALDSIEITFKDQYMGRSEMWRLKTYLTDTCVYVNKKIDYNDMQIRCQVYEMWSQGERVASGVITEDTKIVFRSSTSMVYLFLQMSSEMWDFDIHGDLYFEKAVNGFLTELFQKWRKLSCNHEVTIVLFSRTFYAAKSLDEFPEHMRDCLQQDYKGRFYEDFYRVAIQNERCDDWCTVLGQLRKLFTSYQATVLRYHERENMKIPPATNSSATQGNFLEVLNISLNTFEKHYLDRTFDRTGQLSVVITPGVGVFSVDRELTNITKQRIIDNGVGSDLVCVGEQPLHAVPLLKFHNKDTTLTSADDYSLPHWINLSFYSTNKKIVYSSFIPRIKLPLFGSQLTLHDGVGDGEGEENERHFLSCNQSEYKHNSLFDYDAYDEQIFQPLPAQSTCSLQRVVRAKKTSVPSLETYAYRNNDWENLTPTQIPAMRRKMSDPDIHHGTSAMLAALQPDTTNLSESLASEKNSRRTIVSIAPIVRPGRALINPFDPSQVTIKLTSNRRRWTHIFPKGPTGVLIQQHHYQAVPAKPTQAGQQRPLQQTQSNNNNDQEDYGCENGEQYDRVSSHSLLNKSDSSQSFVMGDEPIDFFKRRQNSPMNPQPANVPNLTATQAKSYLWGATGEQEWTPAITTVKHLRPIVEGEHHHLGSLEALRALDPPPDAEAGGGRGKIIIGVDWKSLTIPACLPITTDYFPDKRSLNNDYVISDYTLLPDDVNHDYAQSRAVYRKPLSTEEVCKEIVSQRLAQGFQLIVVDEKPPTASGCSSGSAVQPVKLSRETNKEYLLSIGRIFHKISLSGSVITVTGYRPRHPYPPINVDYRYRFHAPQHETYEISGVNFTTEKLENFNWNHMDLYICTRGDVDYPLMESLKYWRYRMYLLPRENIVSKIASCQRCDIFPDVTADNTREQVEDFVRLIEAVSKLKRQYARKARYLASLLQDSPIAHITKRRHSTSIISRPQPNQGLTNSPFRERVGSNRLPEKRPSINVRPKLENGRIPRIFPATDAAAAAGVAARDDQDDGFPVDIKFSPNATLPEIFEAMKHPVNGVGFFSQTQSLPSCTFVSYDALMWLKTRLNNGRHPLDLLEAMRKERMICHASGDWKKPVVPGFVFYYVVQQDKNAKDYAPPLDDYSAFVNEWLEIEFQGCSFLWHDEPVTTPVPNFLRDSPAPQSWTETSSNKRVYRQSHLEIDVNQKSDRMEWGHVKHHTVLQPRFAFEIVVEWVTSSGPIVADLIGGWMRKANQFNFLVSVPADPMAEPFTKKSDPLRGPIFIPLCTTFLPNGAALFDEFPEESRSDRMLFFQEAILGKFGFLPCVLEKKYSVGKDLPKEYQYVHCTGNMFALIRCATNNYQVESPILKEANVTRCVYGHTNNTNVPKKVGFLWAWNHMIPNKKWKAQTINNSADGELFQLKMLKDFREFCSNSDQRLSTFWTQSQELKRRAQKFEFNNNNTEENKMK", "sequence_length": 1544, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb9a4af358d0af749ebc2a1429be274d8124ff65c3191e621a6a449e91850c66", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9W0E3.json", "taxon_id": "7227", "uniprot_accession": "Q9W0E3", "uniprot_release": "2026_03" } ], "pfam_id": "PF12257", "short_name": "vWA_IML1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/baculo-f-pf12259.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/baculo-f-pf12259.yaml" } ], "pfam_ids": [ "PF12259" ], "protein_name": "Retrovirus-related Env polyprotein from copia-like transposable element 17.6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLITTVHGQQIEINNIDTNHGYLLFSDKPVQIPSSFEHHCLRINLTEIDTIADYFEQRLRTDYHAPQVKFLYNKMRRELAGIALRHRNKRGLINIVGSVFKYLFGTLDENDRVDIQRKLETNAHNSVNLHELNDAIQLINDGMQKIQNYENNSNIINSLLYELMQFTEYIEDVEMGMQLSRLGLFNPKLLNYDKLENVNSQNILNIKTSTWINYNDNQLLIISHIPINFSLINTVKIIPYPDSNGYQLEYTDTQSYFERENKVYNNENKEINNECVTNIIKHLKPICNFESIHTDEIIKYIEPNTIVTWNLTQTSLKQNCQNSFNNIKIKGNKMIKVTQCKIEINSIILSENLFKPEIDLTPLYTPLNITKIKTVKHNDINEMISQNNITLYIFMTTVIIILILLYLYLRYVSFNPFMMLYAKLKLRKNQNQNTAQQIEMEDVPLPLLYPSIPAQV", "sequence_length": 456, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ed957e0ea0609197bbc928346ccd1cee6eda72bc162b770ce81a1a43ea2727b8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P04283.json", "taxon_id": "7227", "uniprot_accession": "P04283", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/baculo-f-pf12259.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/baculo-f-pf12259.yaml" } ], "pfam_ids": [ "PF12259" ], "protein_name": "Protein AC23", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLACKFSQYQAFIMDGVKLLGTCALIILLSTTSTVVGRDRITFTPIEDSAGLMFERMYGLRHHTDDRFVFVKKFNFVSVLQELNNIKSKIELYEAQVSTCTNVRQIKQNRSSIIKARIENQLQFLTQLNKNLITYSVESSILSNDVLDNIDLEYDDSGEFDVYDEYEQPSHWSNMTVSDAQALLRNPPKDRVMFLDTVTTSDVSSKYEEYINCIVSNRTVENECMFLANMMNVLNDKLDDAAALAKMLERIVKQTRKNKLNISNTVIDDDTLLTEMKKLTQTLYNQNRVWVVDFNKDMNSYFDLSQAYKLHLYVDLNTVIMFITMPLLKSTAVSFNLYRVMTVPFCRGKMCLLIISGNEYFGITDSKNYYVPVSDNFRQDCQEFTGYNEFLCPETEPIATMNSKVCEIEMFMGRYSDDVDNMCDIRVANYNPKKAYVNTLIDYRKWLYIFPNTTVSVHYYCHDALVEVDTKVSPGVGVMFSTMAQTCSIRITYDVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQMLLEKATTSFIPTVDNFTRPVLLQLPHKFHIKDYTSTPHHFFHQSKIYTNSAAPDEDSQDDSNTTVVIIAIVAAMILFCGLLLFLFCCIKKRCHQSNNVVVQYKNNNEFVTICNNLEDNRAYINLPNEYDSDDMPKPLYPLLGFNDDLLKDDKPVLYPMIIERIK", "sequence_length": 690, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1760c183a07eb3082ee952e26283b5718459d0648df875f3b3fa70bdccc8024f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41428.json", "taxon_id": "46015", "uniprot_accession": "P41428", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lymantria dispar multicapsid nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/baculo-f-pf12259.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/baculo-f-pf12259.yaml" } ], "pfam_ids": [ "PF12259" ], "protein_name": "Envelope fusion protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSPLALIVLLAWHATAFKSTDTIEVIPLPHTSGFYYQPINRMQFVEDVWHFIIEVDHGVIFQELDELYRDTLHLLNHTRSSKFVSANCTTNAIIESEINTYILKRILYLVQQHNTIDDKIKANAEGDAPDSRWELNTKDPLAPRRKRGVLNFVGTVDKFLFGVMDSNDARELHDLAKTSNALNEQIKEVTDELVNIAKFEEHKQCLERQRDDLCGYATAKMALITEQLTQLDLLYTNLDRAVDDALDNRINSLIMTPQRLYEEMTNVTVHVPTKLTWPVPLKKTNMHDLINDKIVKTHVFKLERRKLIFILEVPLIDDQNYDVYQVIPIPLCGGDGKCAVIVPDSKYLGVSTNKRNYVRLEDDAPKACKMTSKNLLCFKPKVVHVSSEATLCDIKILLHYENSYENVQRDCDVRVGKFDPEIFHLISDYNNWLYVLQRDTELTMDCADASSASNVIRIAAGTGIIRGRNVTRSCNLMTKSKQLALHQLKNSLFSVSAVPLSTSFNLSAALGDLDRLEIESMKNNADLDHKHLQGATQRLIDLRKRMNNNSVFHGAELEGEASDGWFCWLVGWLNIKCATAEAVVACVVLFLVALLLFRIYRFCCPGTCSAMFSCCRFDALSSVPRRRNKTKSSVIRVNSQLQYLDGGGGGEKSHEETPMVMFNNRARDPNVVFKNI", "sequence_length": 676, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7fcec0794e4d7ed78fc22c2f3032b070dabafb5f419616f402c06d6a83c34e6c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9YMJ7.json", "taxon_id": "10449", "uniprot_accession": "Q9YMJ7", "uniprot_release": "2026_03" } ], "pfam_id": "PF12259", "short_name": "Baculo_F", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/tic-complex-go0031897.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031897", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/tic-complex-go0031897.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3611-pf12263.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12263", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3611-pf12263.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9SHU7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12263" ], "protein_name": "Protein TIC 21, chloroplastic", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4c9649ece910ecd1f885f7d4321ef0f9e0c90790232bcc744b5f80b8f6fbbc3a", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQSLLLPPASSSGVSAVALRPGFQHSFNHQSLSTRSLPLFNPLLLAPKKKTTISSYQSPPSLSVYGFQIGGSKPSFTPSTVAFSYPTSPSSVPGDNEVDKAKLAQVAKRLEKTSRYFKRLGSIGFWGQLVSTVVAAVILSFSIVVTGKPTSPATFYATASGIAAAFVSVFWSFGYIRLSERLRRTSIDPAKAPPRADVVKGLRSGIMVNILGMGSALLGMQATVGFLVAKALTTSANPFYQGVSQGYSPVLALDVFLVQASANTLLSHFLGLVCSLELLRSVTVPNSESVVVPKVA", "sequence_length": 296, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4c9649ece910ecd1f885f7d4321ef0f9e0c90790232bcc744b5f80b8f6fbbc3a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SHU7.json", "taxon_id": "3702", "uniprot_accession": "Q9SHU7", "uniprot_release": "2026_03" } ], "pfam_id": "PF12263", "short_name": "DUF3611", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12266", "short_name": "DUF3613", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12267", "short_name": "DUF3614", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12268", "short_name": "DUF3612", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12274", "short_name": "DUF3615", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12275", "short_name": "DUF3616", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3617-pf12276.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12276", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3617-pf12276.yaml" } ], "pfam_ids": [ "PF12276" ], "protein_name": "Uncharacterized protein YtgA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRLLSAIVFPAMFISISNVYALDIQPGEWKMENIEMRTINPDTKEVLMDEKNSGIATLMCYTPKMSEDSKKMVKGFSTSAGGCTTTFVESTDTKLINETVCNNPDVKSHSIVETTKISDTEFAMTMKSDVDAGGNKTTSINKIKQTFVGKTCSEASKGVKQ", "sequence_length": 162, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "579a770790d6545dd1a5631cc6f71bfbf5f8a52c6f10478f39faa24dd7b6c1f5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A1V0.json", "taxon_id": "99287", "uniprot_accession": "P0A1V0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhi", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3617-pf12276.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12276", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3617-pf12276.yaml" } ], "pfam_ids": [ "PF12276" ], "protein_name": "Uncharacterized protein YtgA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRLLSAIVFPAMFISISNVYALDIQPGEWKMENIEMRTINPDTKEVLMDEKNSGIATLMCYTPKMSEDSKKMVKGFSTSAGGCTTTFVESTDTKLINETVCNNPDVKSHSIVETTKISDTEFAMTMKSDVDAGGNKTTSINKIKQTFVGKTCSEASKGVKQ", "sequence_length": 162, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "579a770790d6545dd1a5631cc6f71bfbf5f8a52c6f10478f39faa24dd7b6c1f5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A1V1.json", "taxon_id": "90370", "uniprot_accession": "P0A1V1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas putida", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3617-pf12276.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12276", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3617-pf12276.yaml" } ], "pfam_ids": [ "PF12276" ], "protein_name": "Uncharacterized protein in lpd-3 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIRLPLLALALGMSSPLVHAQMLQPGLWELTTSNMQVDGKPLPDMAFMLGQLKNLPPEQRAMMEGVLAKQGVTVGGNGVRSCLTPEQVATNDIPLQDPKSGCTQKITDRTGNVWKFQFSCPKAQGSGQATFLSDRELTCRH", "sequence_length": 142, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "85254a6f143984b5f266e44729ab6939ed1b6e433632f767e46f1c0d44195a6d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P31047.json", "taxon_id": "303", "uniprot_accession": "P31047", "uniprot_release": "2026_03" } ], "pfam_id": "PF12276", "short_name": "DUF3617", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12277", "short_name": "DUF3618", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12279", "short_name": "DUF3619", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12281", "short_name": "NTP_transf_8", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human astrovirus-1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/astro-1a-pf19415.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19415", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/astro-1a-pf19415.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/astro-p19-pf19414.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19414", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/astro-p19-pf19414.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/astro-vpg-pf19416.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19416", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/astro-vpg-pf19416.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/astrovir-pp-1-pf12285.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/astrovir-pp-1-pf12285.yaml" } ], "pfam_ids": [ "PF12285", "PF13365", "PF19414", "PF19415", "PF19416" ], "protein_name": "Non-structural polyprotein 1A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYGEPYYSSKPDKDFNFGSTMARRQMTPTMVTKLPKFVRNSPQAYDWIVRGLIFPTIGKTYFQRVVVITGGLEDGTYGSFAFDGKEWVGIYPIEHLNLMSSLKLIHKANALQERLRLSQEEKATLALDVQFLQHENVRLKEMIPKPEPRKIQMKWIIMGAVLTFLSLIPGGYAHSQTNNTIFTDMIAACKYSTETLTENLDLRIKLALANITISDKLDAVRQILNFAFVPRAHWLRTVFYYIHYYEMWNIFMFVLAIGTVMRSARPGTDLVTLATSHLSGFRMAVLPTIPFHTTMTLWVMNTLMVCYYFDNLLAITLAILAPILGIIFLCFMEDSNYVSQIRGLIATAVLIAGGHACLTLTGTTTSLFVVILTCRFIRMATVFIGTRFEIRDANGKVVATVPTRIKNVAFDFFQKLKQSGVRVGVNEFVVIKPGALCVIDTPEGKGTGFFSGNDIVTAAHVVGNNTFVNVCYEGLMYEAKVRYMPEKDIAFLTCPGDLHPTARLKLSKNPDYSCVTVMAYVNEDLVVSTAAAMVHGNTLSYAVRTQDGMSGAPVCDKYGRVLAVHQTNTGYTGGAVIIDPADFHPVKAPSQVELLKEEIERLKAQLNSATENATTVVTQQPSAALEQKSVSDSDVVDLVRTAMEREMKVLRDEINGILAPFLQKKKGKTKHGRGRVRRNLRKGVKLLTEEEYRELLEKGLDRETFLDLIDRIIGERSGYPDYDDEDYYDEDDDGWGMVGDDVEFDYTEVINFDQAKPIPAPRTTKQKICPEPEVESQPLDLSQKKEKQSEYEQQVVKSTKPQQLEHEQQVVKPIKPQKSEPQPYSQTYGKAPIWESYDFDWDEDDAKFILPAPHRLTKADEIVLGSKIVKLRTIIETAIKTQNYSALPEAVFELDKAAYEAGLEGFLQRVKSKNKAPKNYKGPQKTKGPKTTTH", "sequence_length": 935, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "91e08e8564ef88feec4eb4a20011672c9ea429c9d42571a7f1657fbc9d8fb720", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6K4.json", "taxon_id": "12456", "uniprot_accession": "P0C6K4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human astrovirus-4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/astro-vpg-pf19416.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19416", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/astro-vpg-pf19416.yaml" } ], "pfam_ids": [ "PF00680", "PF12285", "PF13365", "PF19414", "PF19415", "PF19416" ], "protein_name": "Non-structural polyprotein 1AB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAHGEPYYSSKPDKDFNFGSTMARRQMTPTMVAKLPNFVRNSPQAYDWIVRGLIFPTTGKTYFQRVVVITGGLEDGTYGSFVFDGREWVEIYPIEHLNLMSSLKLIHKANALQERLRLSQEEKATLALDVQFLQHENVRLKELIPKPEPRKIQMKWIIVGAVLTFLSLIPGGYAQSQINNTIFTDMIAACKYSTETLTENLDLRIKLALANITISDKLDAVRQILNFAFVPRAHWLRTVFYYIHYYEMWNIFMFVLAIGTVMRSARPGTDLITLATSHLSGFRMAVLPTIPFHTTMTLWVMNTLMVCYYFDNLLAITLAILAPILGIIFLCFMEDSNYVSQIRGLIATAVLIAGGHACLTLTGTTTSLFVVILTCRFIRMATVFIGTRFEIRDANGKVVATVPTRIKNVAFDFFQKLKQSGVRVGVNEFVVIKPGALCVIDTPEGKGTGFFSGNDIVTAAHAVGNNTFVNVCYEGLMYEAKVRYMPEKDIAFITCPGDLHPTARLKLSKNPDYSCVTVMAYVNEDLVVSTAAAMVHGNTLSYAVRTQDGMSGAPVCDKYGRVLAVHQTNTGYTGGAVIIDPTDFHPVKAPSRVELLKEEIERLKAQLNSAAENPATAVTQQPVVTLEQKSVSDSDVVDLVRTAMEREMKVLRDEINGILAPFLQKKKGKTKHGRGRVRRNLRKGVKLLTEEEYRELLEKGLDRETFLDLIDRIIGERSGYPDYDDEDYYDEDDDGWGVVGDDVEFDYTEVINFDQAKPTPAPRTVKPKTCPEPEAETQPLDLSQKKEKQLEHEQQVVKSTKPQKNEPQPYSQTYGKAPIWESYDFDWDEDDAKFILPAPHRLTKADEIVLGSKIVKLRTIIETAIKTQNYSALPEAVFELDKAAYEAGLEGFLQRVKSKKGSKKLQRAPEDQGAQNYHSLDAWKSLLEPPRERRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLPEPTWHAFEEYGPTTWGPQAFIKSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHITATEKNTDSTPAYPKMNYFDTEENYLEAHGWAPYIREFTRVFKGDKPEVLWYLFLKKEIIKEEKIRNSDIRQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQRLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYKHVHEWYVDNLLNRHVLLPSGEVTLQTRGNPSGQFSTTMDNNMVNFWSQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTPSVPDDYEERVINMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEPVPTSPEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLRDSGLPARLTEEQLHRIWRGGPKKCDG", "sequence_length": 1415, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "89751302affc29058abf2371f0287643b813edd7fc20015abce1e939e509db89", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3ZN06.json", "taxon_id": "35300", "uniprot_accession": "Q3ZN06", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human astrovirus-4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/astro-p19-pf19414.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19414", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/astro-p19-pf19414.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/astrovir-pp-1-pf12285.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/astrovir-pp-1-pf12285.yaml" } ], "pfam_ids": [ "PF12285", "PF13365", "PF19414", "PF19415", "PF19416" ], "protein_name": "Non-structural polyprotein 1A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAHGEPYYSSKPDKDFNFGSTMARRQMTPTMVAKLPNFVRNSPQAYDWIVRGLIFPTTGKTYFQRVVVITGGLEDGTYGSFVFDGREWVEIYPIEHLNLMSSLKLIHKANALQERLRLSQEEKATLALDVQFLQHENVRLKELIPKPEPRKIQMKWIIVGAVLTFLSLIPGGYAQSQINNTIFTDMIAACKYSTETLTENLDLRIKLALANITISDKLDAVRQILNFAFVPRAHWLRTVFYYIHYYEMWNIFMFVLAIGTVMRSARPGTDLITLATSHLSGFRMAVLPTIPFHTTMTLWVMNTLMVCYYFDNLLAITLAILAPILGIIFLCFMEDSNYVSQIRGLIATAVLIAGGHACLTLTGTTTSLFVVILTCRFIRMATVFIGTRFEIRDANGKVVATVPTRIKNVAFDFFQKLKQSGVRVGVNEFVVIKPGALCVIDTPEGKGTGFFSGNDIVTAAHAVGNNTFVNVCYEGLMYEAKVRYMPEKDIAFITCPGDLHPTARLKLSKNPDYSCVTVMAYVNEDLVVSTAAAMVHGNTLSYAVRTQDGMSGAPVCDKYGRVLAVHQTNTGYTGGAVIIDPTDFHPVKAPSRVELLKEEIERLKAQLNSAAENPATAVTQQPVVTLEQKSVSDSDVVDLVRTAMEREMKVLRDEINGILAPFLQKKKGKTKHGRGRVRRNLRKGVKLLTEEEYRELLEKGLDRETFLDLIDRIIGERSGYPDYDDEDYYDEDDDGWGVVGDDVEFDYTEVINFDQAKPTPAPRTVKPKTCPEPEAETQPLDLSQKKEKQLEHEQQVVKSTKPQKNEPQPYSQTYGKAPIWESYDFDWDEDDAKFILPAPHRLTKADEIVLGSKIVKLRTIIETAIKTQNYSALPEAVFELDKAAYEAGLEGFLQRVKSKNKAPKNYKGPQKTKGPKTITH", "sequence_length": 920, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "93caf9a06353919160d1c8c42a39cd5b4fe779a66a0e15b9cec9f01fe2b33e8f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3ZN07.json", "taxon_id": "35300", "uniprot_accession": "Q3ZN07", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human astrovirus-8", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/astro-1a-pf19415.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19415", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/astro-1a-pf19415.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/astro-p19-pf19414.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19414", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/astro-p19-pf19414.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/astro-vpg-pf19416.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19416", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/astro-vpg-pf19416.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/astrovir-pp-1-pf12285.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/astrovir-pp-1-pf12285.yaml" } ], "pfam_ids": [ "PF00680", "PF12285", "PF13365", "PF19414", "PF19415", "PF19416" ], "protein_name": "Non-structural polyprotein 1AB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMALGEPYYSSKPDKDFNFGSTMARRQMTPTMVTKLPKFVRNSPQAYDWIVRGLIFPTTGKTYFQRVVVITGGLEDGTYGSYAFNGSEWVEIYPIEHLNLMSSLKLIHKANALQERLRLSQEEKATLALDVQFLQHENVRLKELIPKPEPRKIQMKWIIVGAVLTFLSLIPGGYAQSQTNNTIFTDMIAACKYSTETLTENLDLRIKLALANITINDKLDAVRQILNFAFVPRAHWLRTVFYYIHYYEMWNIFMFVLAIGTVMRSARPGTDLITLATSHLSGFRMAVLPTIPFHTTMTLWVMNTLMVCYYFDNLLAITMAILAPILGIIFLCFMEDSNYVSQIRGLIATAVLIAGGHACLTLTGTTTSLFVVILTCRFIRMATVFIGTRFEIRDANGKVVATVPTRIKNVAFDFFQKLKQSGVRVGVNDFVVIKPGALCIIDTPEGKGTGFFSGNDIVTAAHVVGNNTFVSVCYEGLVYEAKVRYMPEKDIAFITCPGDLHPTARLKLSKNPDYSCVTVMAYVNEDLVVSTATAMVHGNTLSYAVRTQDGMSGAPVCDKYGRVLAVHQTNTGYTGGAVIIDPADFHPVKAPSQVELLKEEIERLKAQLNSAAENPVTVVTQQPIVTLEQKSVSDSDVVDLVRTAMEREMKVLRDEINGILAPFLQKKKGKTKHGRGRVRRNLRKGVKLLTEEEYRELLEKGLDRETFLDLIDRIIGERSGYPDYDDEDYYDEDDDGWGMVGDDVEFDYTEVINFDQAKPTPAPRTTKPKPCPEPKIEAQPLDLSQKKEKQPEHEQQVAKPTKPQKIEPQPYSQTYGKAPIWESYDFDWDEDDAKFILPAPHRLTKADEIVLGSKIVKLRTIIETAIKTQNYSALPEAVFELDKAAYEAGLEGFLQRVKSKKQGPKKLQRAPEDQGAQNYHSLDAWKSLLEPPRERRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLPEPTWHAFEEYGPTTWGPQAFVKSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHITATEKNTDSTPAYPKMNYFDTEEDYLEAHGWAPYIREFTRVFKGDKPEVLWYLFLKKEIIKEEKIRNSDIRQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQRLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTPSVPDNYEERVITMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEPVPTSPEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLRDSGLPARLTEEQLHRIWRGGPKKCDG", "sequence_length": 1417, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "334a4b88690c5c4d6773826c871fa0fe84b9c3d1b713cd48f1f9419609bd2384", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9IFX2.json", "taxon_id": "43358", "uniprot_accession": "Q9IFX2", "uniprot_release": "2026_03" } ], "pfam_id": "PF12285", "short_name": "Astrovir_pp_1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12286", "short_name": "DUF3622", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12290", "short_name": "DUF3802", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhodobacter capsulatus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3623-pf12291.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12291", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3623-pf12291.yaml" } ], "pfam_ids": [ "PF12291" ], "protein_name": "Uncharacterized 30.4 kDa protein in puhA 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNPWLVALTTIFVWWFSTGAILWRIRRADLSGRAAHMRSVVGGLPLLIGGYIAMANSADDSSVRGAHVAFLSAVSVWGWFELAFLSGVVAGPNRDHCPPFASMTERFLRSVGTLLWHEIGLISALILCAVLVWTGENHFGLWTFATLFFARVSAKLNLFLGVPRINTQFLPKPLAHLASHFRHARMNFLFPVSITVLTFATGCWMERAADAQTDGIFIGFVLLTVLTALALLEHWFMVLPLPDQKLWTWMLPSVEDPAETVAEPVPGRIPVGE", "sequence_length": 274, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "51e8f3c84ab09895b2fcbfe79086ae9c667d421e7f1f805d407a58067632f8ab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P26158.json", "taxon_id": "1061", "uniprot_accession": "P26158", "uniprot_release": "2026_03" } ], "pfam_id": "PF12291", "short_name": "DUF3623", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12292", "short_name": "DUF3624", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12293", "short_name": "T4BSS_DotH_IcmK", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12294", "short_name": "DUF3626", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3627-pf12299.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12299", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3627-pf12299.yaml" } ], "pfam_ids": [ "PF04383", "PF12299" ], "protein_name": "Putative KilA-N domain-containing protein R879", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSDNGILMSNINKPNKCYYYCIISEQWDELIYNITGGKITELRGTYVHPKLIIHIASWCNPEYAIKVSEIVLSYHAKEAIKEKEKLLQKKNDKIDELSLKIDKQNKQINKQTATMKKQTKIMKNQTNMMKDQKSTIKEQDKKINELLSKSNEVLGYAKDTNRKITHVVKERVPYSDEPKIEHQFIIMKNNDEPIKPKKGESPKKIYDYTALRIMNKSKSSTMNRYFKDHPDGETILTIDYTPNAMHLWNQCKKELIEDDKIKSSGTSSSSFNLKKGYSENKLKKDIKRIHNLRLKHPE", "sequence_length": 299, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4aa9e5a862bcb8efc3d575e41c2afe1c362956326c9d2da7a347459487c865ac", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q7T6Y3.json", "taxon_id": "212035", "uniprot_accession": "Q7T6Y3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 6", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3627-pf12299.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12299", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3627-pf12299.yaml" } ], "pfam_ids": [ "PF04383", "PF12299" ], "protein_name": "Putative KilA-N domain-containing protein 313L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLNDVCYEKIKNNFYYGLFGDFKLVVDKNTECFNATKLCNSGGKRFRDWTKLEKSKKLMEYYKGRRDDHRGGSNFYEVKGDNKDDEVSKTTGQYVKKELILDIASWISTEFYDKCNQIVIDFFVVEFKEKEKELTHQLSIVEENLKKLRIENENNLEEIKLKDTRIDELIYASKRQEQMLLESHNLLKSMGIEVKDIKEQNNELLNEVGELREDNNELQEQVENVQEQIQKVQVKLEISVEDRAPQPDKRGKKERFILLKRNDEHYPYYTIRAQDINAKKAVKRQQGKYEEVLILLDLVCHPNTKTFYVRIKDDLKKKGVKFNLCEIDISKSVITEKDLIEEMERINEEKRTLIIE", "sequence_length": 358, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "33197663803fc7d9e497d85f8fd17c74a561536ed710dfd50c6a1746f2cd5b1f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91FL1.json", "taxon_id": "176652", "uniprot_accession": "Q91FL1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 6", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3627-pf12299.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12299", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3627-pf12299.yaml" } ], "pfam_ids": [ "PF10553", "PF12299" ], "protein_name": "Putative MSV199 domain-containing protein 238R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFNGIERFYVKELKKLEFSSIIELQLAEEELIRDFGTLNTIHNNDSGVFGNIDVQITDLRKKKKKIMDKIYILPPRKEILDSAMNESKIKLDISWFFDNYMDQELTNVMNYFDGEEPIHINTVVLEWFGYEGDLRTQKRKFIDMLKRNSIPYKELTSKEEIELYPTIKEEILSLPHKGAIACSKWLVMKPYDIKIAMLRLNTKNSQIIKQYYIKMEELVRLYAQYTTLFIEKEKEQMSREMNSLQLMMEEMKIANLKQEEERKLDRLMLTESRNMLQTMGIEIKTVKYNNNNLIDQNNELLERVDEVLHKVDVVQTKLNISVEDRAPQPDKNKRRERFLLLKRNDENYPYYTIRAQDINAKKALKRQKDMFSDVTILLDLICHPNTKTFYVRIKDDLKKKGVEFHLCEISIEDSQITEQDLVEAMMKINDEKREIKNEK", "sequence_length": 440, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3281d9b572f3f42de389d1c7d036bcf17347c1ce1dbbedb9b437b3dda8cc0bfe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91FT4.json", "taxon_id": "176652", "uniprot_accession": "Q91FT4", "uniprot_release": "2026_03" } ], "pfam_id": "PF12299", "short_name": "DUF3627", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12300", "short_name": "RhlB", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12302", "short_name": "DUF3629", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12305", "short_name": "DUF3630", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharopolyspora erythraea", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3631-pf12307.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12307", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3631-pf12307.yaml" } ], "pfam_ids": [ "PF12307" ], "protein_name": "Uncharacterized 28.9 kDa protein in xis 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRRAPGETVAPYRHRGDRRHLTALAKRLAAWLRASMPDLERAEPDMPLEDRAADTWEPLIIVADHAGGDWPTRARNAAVDLLAEAADNDQGSLRTRLLVDCRTAFGDHPTLSTTELLRQLNSDPEAPWPTYGKTGLNAAKLSKLLAEFDIRSANVRFPDGTQAKGYQRAHFFDAWTRYCPDAPHDRPEGVPSQPSQASHRRSERDGLTLWDGISRPNDEPDPDLWDGTSRPTAPSRPSLTCIGTAGTAGTDTPPSTNTKGAA", "sequence_length": 263, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b09acf8822e42f63954bd716ce64ac1182215096b03b3712d8f4f04f27a60bab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P22875.json", "taxon_id": "1836", "uniprot_accession": "P22875", "uniprot_release": "2026_03" } ], "pfam_id": "PF12307", "short_name": "DUF3631", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Penicillium oxalicum (strain 114-2 / CGMCC 5302)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3632-pf12311.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12311", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3632-pf12311.yaml" } ], "pfam_ids": [ "PF12311" ], "protein_name": "Oxopyrrolidines biosynthesis cluster protein G", 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"organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/plant-ovule-morphogenesis-go0048482.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0048482", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/plant-ovule-morphogenesis-go0048482.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-leaf-senescence-go1900057.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1900057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-leaf-senescence-go1900057.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/seed-morphogenesis-go0048317.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0048317", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/seed-morphogenesis-go0048317.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/the-lim-domain-of-da1-the-lim-domain-of-da1-da1-contains-one-copy-of-l-cd09396.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09396", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/the-lim-domain-of-da1-the-lim-domain-of-da1-da1-contains-one-copy-of-l-cd09396.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-da1-like-domain-ipr022087.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-da1-like-domain-ipr022087.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/da1-like-pf12315.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12315", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/da1-like-pf12315.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/uim-2-pf23625.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/uim-2-pf23625.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0C7Q8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00412", "PF12315", "PF23625" ], "protein_name": "Protein DA1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8203ec5f62b0a519246817df39540a873760be4a5585a4ccf573267a570be1b8", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGWFNKIFKGSNQRLRVGNNKHNHNVYYDNYPTASHDDEPSAADTDADNDEPHHTQEPSTSEDNTSNDQENEDIDRAIALSLLEENQEQTSISGKYSMPVDEDEQLARALQESMVVGNSPRHKSGSTYDNGNAYGAGDLYGNGHMYGGGNVYANGDIYYPRPITFQMDFRICAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPKCDVCSHFIPTNHAGLIEYRAHPFWVQKYCPSHEHDATPRCCSCERMEPRNTRYVELNDGRKLCLECLDSAVMDTMQCQPLYLQIQNFYEGLNMKVEQEVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEEQTVSTVRKRSKHGTGKWAGNITEPYKLTRQCEVTAILILFGLPRLLTGSILAHEMMHAWMRLKGFRTLSQDVEEGICQVMAHKWLDAELAAGSTNSNAASSSSSSQGLKKGPRSQYERKLGEFFKHQIESDASPVYGDGFRAGRLAVHKYGLRKTLEHIQMTGRFPV", "sequence_length": 532, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8203ec5f62b0a519246817df39540a873760be4a5585a4ccf573267a570be1b8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C7Q8.json", "taxon_id": "3702", "uniprot_accession": "P0C7Q8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/the-lim-domain-of-da1-the-lim-domain-of-da1-da1-contains-one-copy-of-l-cd09396.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09396", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/the-lim-domain-of-da1-the-lim-domain-of-da1-da1-contains-one-copy-of-l-cd09396.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-da1-like-domain-ipr022087.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-da1-like-domain-ipr022087.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/da1-like-pf12315.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12315", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/da1-like-pf12315.yaml" } ], "pfam_ids": [ "PF00412", "PF12315" ], "protein_name": "Protein DA1-related 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSSSSSSSSSPSSSYGVARVSHISNPCIFGEVGSSSSSTYRDKKWKLMKWVSKLFKSGSNGGGSGAHTNHHPPQFQEDENMVFPLPPSSLDDRSRGARDKEELDRSISLSLADNTKRPHGYGWSMDNNRDFPRPFHGGLNPSSFIPPYEPSYQYRRRQRICGGCNSDIGSGNYLGCMGTFFHPECFRCHSCGYAITEHEFSLSGTKPYHKLCFKELTHPKCEVCHHFIPTNDAGLIEYRCHPFWNQKYCPSHEYDKTARCCSCERLESWDVRYYTLEDGRSLCLECMETAITDTGECQPLYHAIRDYYEGMYMKLDQQIPMLLVQREALNDAIVGEKNGYHHMPETRGLCLSEEQTVTSVLRRPRLGAHRLVGMRTQPQRLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLNGFRNLNPEVEEGICQVLSYMWLESEVLSDPSTRNLPSTSSVATSSSSSFSNKKGGKSNVEKKLGEFFKHQIAHDASPAYGGGFRAANAAACKYGLRRTLDHIRLTGTFPL", "sequence_length": 528, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8c8fcae00feca58305eaec4605bc6527c571b1d82619976d28bcbc6c157610c1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0WSN2.json", "taxon_id": "3702", "uniprot_accession": "Q0WSN2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/uim-2-pf23625.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/uim-2-pf23625.yaml" } ], "pfam_ids": [ "PF00412", "PF12315", "PF23625" ], "protein_name": "LIM domain-containing protein HDR3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYSSRSCDQCSHERRSGFMKWLCAFLKGTKDGEANRRRPRVTAGEETTLWEEPVRPKKEEPPRHNNEEMDHALALALADDAKNTKERNHDKGENDEELARAIQDSLNMNPYQPYNPCAPSQTQARSRGYRVCGGCKHEIGHGHYLSCLGMYWHPQCFRCSSCRHPIREMEFTLLGTDPYHKLCYKELHHPKCDVCLQFIPTNRTGLIEYRAHPFWGQKYCPLHEHDRTPRCCSCEKMEPRNTKYMSLGDGRSLCMECLDSAIMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESKGPHHMPETRGLCLSEEQTVTSILRRPRIGANRLLDMKTQPQKLTRRCEVTAILVLFGLPRLLTGSILAHELMHGWLRLKGYRNLKAEIEEGICQVMSYLWLESEILPSTSRYGQASTSYASSSSSSCRPPPSKKGGISHTEKKLGEFFLHQIANDTSSAYGDGFRAAYAAVNKYGLRQSLNHIRLTGGFPV", "sequence_length": 501, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1148bcf231ca0f451d45ea7724f5661b9f65768a10a4b93a13a013e94f6436a9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q10NJ6.json", "taxon_id": "39947", "uniprot_accession": "Q10NJ6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/the-lim-domain-of-da1-the-lim-domain-of-da1-da1-contains-one-copy-of-l-cd09396.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09396", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/the-lim-domain-of-da1-the-lim-domain-of-da1-da1-contains-one-copy-of-l-cd09396.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-da1-like-domain-ipr022087.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-da1-like-domain-ipr022087.yaml" } ], "pfam_ids": [ "PF00412", "PF12315" ], "protein_name": "Protein DA1-related 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGWLTKILKGSSHKFSDGQCNGRYREDRNLEGPRYSAEGSDFDKEEIECAIALSLSEQEHVIPQDDKGKKIIEYKSETEEDDDDDEDEDEEYMRAQLEAAEEEERRVAQAQIEEEEKRRAEAQLEETEKLLAKARLEEEEMRRSKAQLEEDELLAKALQESMNVGSPPRYDPGNILQPYPFLIPSSHRICVGCQAEIGHGRFLSCMGGVWHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHNFIPTNPAGLIEYRAHPFWMQKYCPSHERDGTPRCCSCERMEPKDTKYLILDDGRKLCLECLDSAIMDTHECQPLYLEIREFYEGLHMKVEQQIPMLLVERSALNEAMEGEKHGHHHLPETRGLCLSEEQTVTTVLRRPRIGAGYKLIDMITEPCRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLNGYPNLRPEVEEGICQVLAHMWLESETYAGSTLVDIASSSSSAVVSASSKKGERSDFEKKLGEFFKHQIESDSSSAYGDGFRQGNQAVLKHGLRRTLDHIRLTGTFP", "sequence_length": 553, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "91993038ec42a11f1a60ce48a5de06b52556aeac9e2ac0d0c5a80e0fc74469f5", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8W4F0.json", "taxon_id": "3702", "uniprot_accession": "Q8W4F0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/the-lim-domain-of-da1-the-lim-domain-of-da1-da1-contains-one-copy-of-l-cd09396.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09396", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/the-lim-domain-of-da1-the-lim-domain-of-da1-da1-contains-one-copy-of-l-cd09396.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-da1-like-domain-ipr022087.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-da1-like-domain-ipr022087.yaml" } ], "pfam_ids": [ "PF00412", "PF02809", "PF12315" ], "protein_name": "Protein DA1-related 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASDYYSSDDEGFGEKVGLIGEKDRFEAETIHVIEVSQHEADIQKAKQRSLATHEAEKLDLATHEAEQLDLAIQEFSRQEEEEERRRTRELENDAQIANVLQHEERERLINKKTALEDEEDELLARTLEESLKENNRRKMFEEQVNKDEQLALIVQESLNMEEYPIRLEEYKSISRRAPLDVDEQFAKAVKESLKNKGKGKQFEDEQVKKDEQLALIVQESLNMVESPPRLEENNNISTRAPVDEDEQLAKAVEESLKGKGQIKQSKDEVEGDGMLLELNPPPSLCGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIAIHDIENHVSNSRGKFHKSCYERYCYVCKEKKMKTYNNHPFWEERYCPVHEADGTPKCCSCERLEPRESNYVMLADGRWLCLECMNSAVMDSDECQPLHFDMRDFFEGLNMKIEKEFPFLLVEKQALNKAEKEEKIDYQYEVVTRGICLSEEQIVDSVSQRPVRGPNNKLVGMATESQKVTRECEVTAILILYGLPRLLTGYILAHEMMHAYLRLNGHRNLNNILEEGICQVLGHLWLDSQTYATADATADASSSASSSSRTPPAASASKKGEWSDFDKKLVEFCKNQIETDDSPVYGLGFRTVNEMVTNSSLQETLKEILRQR", "sequence_length": 644, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "85ef00e8784dd696836571b3c50e5f809dd112707e207e0f8e05aad8c71e7740", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FJX8.json", "taxon_id": "3702", "uniprot_accession": "Q9FJX8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/the-lim-domain-of-da1-the-lim-domain-of-da1-da1-contains-one-copy-of-l-cd09396.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09396", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/the-lim-domain-of-da1-the-lim-domain-of-da1-da1-contains-one-copy-of-l-cd09396.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-da1-like-domain-ipr022087.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-da1-like-domain-ipr022087.yaml" } ], "pfam_ids": [ "PF00412", "PF12315", "PF23625" ], "protein_name": "Protein DA1-related 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWCLSCFKPSTKHDPSEDRFEEETNIVTGISLYEDVILRQRRSEADQIEWAIQDSFNPQETSRCRQREEDDQIARGLQYVEETELDKSVVDEEDQQLSKIVEESLKEKGKSKQFEDDQVENDEQQALMVQESLYMVELSAQLEEDKNISTIPPLNEDAQLQKVIWESAKGKGQIEHFKDPVEEDGNLPRVDLNVNHPHSICDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEFSNTKGRCHITCYERSHPNCHVCKKKFPGRKYKEHPFWKEKYCPFHEVDGTPKCCSCERLEPWGTKYVMLADNRWLCVKCMECAVMDTYECQPLHFEIREFFGSLNMKVEKEFPLLLVEKEALKKAEAQEKIDNQHGVVTRGICLSEGQIVNSVFKKPTMGPNGELVSLGTEPQKVVGGCEVTAILILYGLPRLLTGYILAHEMMHAWLRLNGYRNLKLELEEGICQVLGHMWLESQTYSSSAAASSASSSSRTPAANASKKGAQSDYEKKLVEFCKDQIETDDSPVYGVGFRKVNQMVSDSSLHKILKSIQHWTKPDSNL", "sequence_length": 560, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0fa06a77263ed3aee028164bdd0b1584479b0c7ba2225b28fd48f14a3b7d67f1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FJX9.json", "taxon_id": "3702", "uniprot_accession": "Q9FJX9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/da1-like-pf12315.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12315", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/da1-like-pf12315.yaml" } ], "pfam_ids": [ "PF00412", "PF00931", "PF07725", "PF12315", "PF23282" ], "protein_name": "Protein DA1-related 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPPAARVTPSIKADCSHSVNIICEETVLHSLVSHLSAALRREGISVFVDACGLQETKFFSIKQNQPLTDGARVLVVVISDEVEFYDPWFPKFLKVIQGWQNNGHVVVPVFYGVDSLTRVYGWANSWLEAEKLTSHQSKILSNNVLTDSELVEEIVRDVYGKLYPAERVGIYARLLEIEKLLYKQHRDIRSIGIWGMPGIGKTTLAKAVFNHMSTDYDASCFIENFDEAFHKEGLHRLLKERIGKILKDEFDIESSYIMRPTLHRDKLYDKRILVVLDDVRDSLAAESFLKRLDWFGSGSLIIITSVDKQVFAFCQINQIYTVQGLNVHEALQLFSQSVFGINEPEQNDRKLSMKVIDYVNGNPLALSIYGRELMGKKSEMETAFFELKHCPPLKIQDVLKNAYSALSDNEKNIVLDIAFFFKGETVNYVMQLLEESHYFPRLAIDVLVDKCVLTISENTVQMNNLIQDTCQEIFNGEIETCTRMWEPSRIRYLLEYDELEGSGETKAMPKSGLVAEHIESIFLDTSNVKFDVKHDAFKNMFNLKFLKIYNSCSKYISGLNFPKGLDSLPYELRLLHWENYPLQSLPQDFDFGHLVKLSMPYSQLHKLGTRVKDLVMLKRLILSHSLQLVECDILIYAQNIELIDLQGCTGLQRFPDTSQLQNLRVVNLSGCTEIKCFSGVPPNIEELHLQGTRIREIPIFNATHPPKVKLDRKKLWNLLENFSDVEHIDLECVTNLATVTSNNHVMGKLVCLNMKYCSNLRGLPDMVSLESLKVLYLSGCSELEKIMGFPRNLKKLYVGGTAIRELPQLPNSLEFLNAHGCKHLKSINLDFEQLPRHFIFSNCYRFSSQVIAEFVEKGLVASLARAKQEELIKAPEVIICIPMDTRQRSSFRLQAGRNAMTDLVPWMQKPISGFSMSVVVSFQDDYHNDVGLRIRCVGTWKTWNNQPDRIVERFFQCWAPTEAPKVVADHIFVLYDTKMHPSDSEENHISMWAHEVKFEFHTVSGENNPLGASCKVTECGVEVITAATGDTSVSGIIRESETITIIEKEDTIIDEEDTPLLSRKPEETNRSRSSSELQKLSSTSSKVRSKGNVFWKWLGCFPLQPKNLRSRSRRTTALEEALEEALKEREKLEDTRELQIALIESKKIKKIKQADERDQIKHADEREQRKHSKDHEEEEIESNEKEERRHSKDYVIEELVLKGKGKRKQLDDDKADEKEQIKHSKDHVEEEVNPPLSKCKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISDLRGMYHKPCYKELRHPNCYVCEKKIPRTAEGLKYHEHPFWMETYCPSHDGDGTPKCCSCERLEHCGTQYVMLADFRWLCRECMDSAIMDSDECQPLHFEIREFFEGLHMKIEEEFPVYLVEKNALNKAEKEEKIDKQGDQCLMVVRGICLSEEQIVTSVSQGVRRMLNKQILDTVTESQRVVRKCEVTAILILYGLPRLLTGYILAHEMMHAYLRLNGYRNLNMVLEEGLCQVLGYMWLECQTYVFDTATIASSSSSSRTPLSTTTSKKVDPSDFEKRLVNFCKHQIETDESPFFGDGFRKVNKMMASNNHSLKDTLKEIISISKTPQYSKL", "sequence_length": 1613, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "555ac8c6730520d5b36d3c9569dad234038a750c0d176903f0b84749d3d6a48d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FKN7.json", "taxon_id": "3702", "uniprot_accession": "Q9FKN7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-da1-like-domain-ipr022087.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-da1-like-domain-ipr022087.yaml" } ], "pfam_ids": [ "PF12315" ], "protein_name": "Protein DA1-related 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVRRKRQEEDEKIEIERVKEESLKLAKQAEEKRRLEESKEQGKRIQVDDDQLAKTTSKDKGQINHSKDVVEEDVNPPPSIDGKSEIGDGTSVNPRCLCCFHCHRPFVMHEILKKGKFHIDCYKEYYRNRNCYVCQQKIPVNAEGIRKFSEHPFWKEKYCPIHDEDGTAKCCSCERLEPRGTNYVMLGDFRWLCIECMGSAVMDTNEVQPLHFEIREFFEGLFLKVDKEFALLLVEKQALNKAEEEEKIDYHRAAVTRGLCMSEEQIVPSIIKGPRMGPDNQLITDIVTESQRVSGFEVTGILIIYGLPRLLTGYILAHEMMHAWLRLNGYKNLKLELEEGLCQALGLRWLESQTFASTDAAAAAAVASSSSFSSSTAPPAAITSKKSDDWSIFEKKLVEFCMNQIKEDDSPVYGLGFKQVYEMMVSNNYNIKDTLKDIVSASNATPDSTV", "sequence_length": 450, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dfdb7ab9c4b631ab6fb05a07fd2204e8b927912e5d2f6e1b24175eb87cc3f785", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LVR6.json", "taxon_id": "3702", "uniprot_accession": "Q9LVR6", "uniprot_release": "2026_03" } ], "pfam_id": "PF12315", "short_name": "DA1-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12321", "short_name": "DUF3634", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/histone-h3t11-kinase-activity-go0035402.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0035402", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/histone-h3t11-kinase-activity-go0035402.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/histone-h3t3-kinase-activity-go0072354.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0072354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/histone-h3t3-kinase-activity-go0072354.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serine-threonine-protein-kinase-haspin-c-terminal-ipr024604.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024604", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serine-threonine-protein-kinase-haspin-c-terminal-ipr024604.yaml" } ], "pfam_ids": [ "PF12330" ], "protein_name": "Serine/threonine-protein kinase haspin homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGQRVDLWSEVIKSEEEDGDIPKIEAVFQRRKKPDKSSEAVNFGWLVKGARTSSVNGPKRDSWARSLSTRGRESIAVRAYVNNQPQKKAAGRKKPPIPKGKVVKAPDFQKEKEYFRDIDAFELLEESPSPNKSSTWTMGEQVVPEMPHLSTRLEKWLISKKLNHTCGPSSTLSKILENSAIHQESVCDNDAFDSLSLKTPDKSSAGNTSVFRLIPSCDENLAAEDVPVRKIKMESIDLEDELKRLSLTSDLIPTHQDFDQPILDLLSACGQMRPSNFIEAFSKFCEPESIVKIGEGTYGEAFRAGSSVCKIVPIDGDFRVNGEVQKRADELLEEVILSWTLNQLRECETTAQNLCPTYIKTQDIKLCQGPYDPILIKAWEEWDAKHGSENDHPDFPEKQCYVMFVLEHGGKDLESFVLLNFDEARSLLVQATAGLAVAEAAFEFEHRDLHWGNILLSRNNSDTLPFILEGKQVCIKTFGVQISIIDFTLSRINTGEKILFLDLTSDPYLFKGPKGDKQSETYRKMKAVTEDYWEGSFARTNVLWLIYLVDILLTKKSFERSSKHERELRSLKKRMEKYESAKEAVSDPFFSDMLMDQIS", "sequence_length": 599, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "318b68244f6756d4f33566e5dee0299e9c170e06ec1662cc8c9d87969ac879c3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O80528.json", "taxon_id": "3702", "uniprot_accession": "O80528", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/histone-h3t3-kinase-activity-go0072354.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0072354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/histone-h3t3-kinase-activity-go0072354.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mitotic-morphogenesis-checkpoint-signaling-go0044879.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044879", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitotic-morphogenesis-checkpoint-signaling-go0044879.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serine-threonine-protein-kinase-haspin-c-terminal-ipr024604.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024604", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serine-threonine-protein-kinase-haspin-c-terminal-ipr024604.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/haspin-kinase-pf12330.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12330", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/haspin-kinase-pf12330.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P32789", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12330" ], "protein_name": "Serine/threonine-protein kinase Haspin homolog ALK2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a863df4f0486d2ff26e228afa2030b7ca943fe5b691ac5a3d13f79dbc16eecf5", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNFDAVADQQMTDRRYFALEVAESDDADSSLNSSSMGSPAVDVGRKVYKITSHKGSAEDESQSFFTSSDSPTSKTRPVGKTIENDDYYGKRSSTGSSLKQLFNKININDTAHSSNKENVSQSVLSENKLLSPSKRLSKQGLTKVTNSKFRTPLRPISNQSTLSRDEPVKDFRSLKFRSGSDFKCWGDEKTSSHVHSSSVNSVNSFTSTTSSSKWKFWKNDNLLSRSLSSRSVNDQDPNFVQPKPTNSLQKKSSISSFHNSIFGGGKHTEKKRNSGFIMPDHQSTKELNHKHSSSNLSFRSLKHKTSHSSLNKLKVRRKGNTQELNHPIKKTCQISLPVPDQVSKDKIQLKLKNSTSLASLSSEVTPINTLDYNDSILQQILQLCDVKYILHDLREAQSLGLFTLNTRSVQLSHNFWQTYHSDMQTSLICKKVCLGALSDLTTSNLISLHELKSLRLIQGTSGVANLLQAYVVPSNQCENDQNLILYLFFKYQGTPLSRCSNIDYSQALSIFWQCSSILYVAESKFQLEHRNLTLDHILIDSKGNVTLIDMKCCRFLNIDNNKASYTRLDHHYFFQGRGTLQFEIYELMRSMLPQPISWATFEPRTNLLWLYHLSSSLLKMAKKAVVSGALNREENILIELTHLLDPARKHSKTIFKKELVIRTCGDLLSLKGEIMQ", "sequence_length": 676, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a863df4f0486d2ff26e228afa2030b7ca943fe5b691ac5a3d13f79dbc16eecf5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32789.json", "taxon_id": "559292", "uniprot_accession": "P32789", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/histone-h3t3-kinase-activity-go0072354.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0072354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/histone-h3t3-kinase-activity-go0072354.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mitotic-morphogenesis-checkpoint-signaling-go0044879.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044879", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitotic-morphogenesis-checkpoint-signaling-go0044879.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serine-threonine-protein-kinase-haspin-c-terminal-ipr024604.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024604", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serine-threonine-protein-kinase-haspin-c-terminal-ipr024604.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/haspin-kinase-pf12330.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12330", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/haspin-kinase-pf12330.yaml" } ], "pfam_ids": [ "PF12330" ], "protein_name": "Serine/threonine-protein kinase Haspin homolog ALK1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLHFDIVIQLLSSHTLKSHQVEPPMDFETSFEEFVEDKRFIALEVSDNDDDCDTDLTADTADELESSAILKMRESDASLNVTTGNNTSRKTTSNSKKRWSLLSNHSAVSSSKSKKRWSVLSSSFTSESHKDRESRNVLQQKRKSLQSYSSLDTVASNSSISASSSLKRSSTGLSLRQLFTKIGINDDISQPGIGIPQGKENLPPTMGKKNSSIASTSSENRLRTPLKPLVNHSKRPTSQPQQQQPLYNASLSSRRSSISSTVSSSSSSKWRFWKRNKNQTPALLQPDHHSLKTFPAVNRRDSMTPVEPRNMVKHKTSFSDFHKTIFSSNTYSESSDTISSMEITLKNKASSSSLSLNVLKKRNSQSSLKHKSSHASLQKFKRNKGKSSMIAPSTATNSSNDDSCSYSSKNSTLSHRISLPVPDQVSRDKIQNKLRYSTSLLSLNSKSSLPMNKNDHDETLLRQILLNCDIKRILNPAKGDVLPLINDVNHLSSIQLTSNVWQIGEVICKKVSLGTIDDITWDRKFLSLQELEKLKIMQQKFDGIPQLLKSFVVKEANGGLYLYLLFKDHGTPISLISLKNWKQILKIFWSCAGIIHGLEKNLKFEHRNLTLDNILIDGNGNITIIDFKCSRLQTPQDDVLYLRLDHPLFFLNGKDKSKINEYQYQFEFEIYQSMRILLNMDASAFEPMTNLYWLYYLSRVLLKFGDRKLGKNDANRDKMARVINHLEMNLAVHKRGGQLFKRLETEDIKNTGDLLKLYK", "sequence_length": 760, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5a06135590cc876730d69ee31d7750f5be374c080b2eb57b5faa34ccfd407c35", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P43633.json", "taxon_id": "559292", "uniprot_accession": "P43633", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/histone-h3t3-kinase-activity-go0072354.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0072354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/histone-h3t3-kinase-activity-go0072354.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-maintenance-of-mitotic-sister-chromatid-cohesion-centrome-go2000720.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000720", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-maintenance-of-mitotic-sister-chromatid-cohesion-centrome-go2000720.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-maintenance-of-sister-chromatid-cohesion-go0034093.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034093", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-maintenance-of-sister-chromatid-cohesion-go0034093.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-protein-localization-to-chromatin-go0120187.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0120187", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-protein-localization-to-chromatin-go0120187.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serine-threonine-protein-kinase-haspin-c-terminal-ipr024604.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024604", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serine-threonine-protein-kinase-haspin-c-terminal-ipr024604.yaml" } ], "pfam_ids": [ "PF12330" ], "protein_name": "Serine/threonine-protein kinase haspin homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSISKTKMDFLEEGRWKDPFDELLDSRTKLSKMNIVKQNVRVTYNIDSSVENSSYIEIKEPNHKNEPLTLEDCSIKVYCPSDSISTPCDKRLGGTTGLFETDLSPITRLKLEGVEDSRDKCADTNEADLYVNVEILFQNINSSPKKCSNFGKKRLSNLNKMVTAVHPSISLNPGKWRKSLNNFIRSKITETNFTKKVERRSSICQDRKSLVLKGEHKFENKYEEDVLKYCHQCTPLPFNTAYEQHKLLNTKKIGEGAYGEVFRCSRNQEVLKDHISDIVLKIIPLEGSTVINGEKQKTFSQILPEIIITKKMCSLRTSKTNSTNGFVSIQKVSLVKGRYPPHFIKLWEKYDNEKGSENDHPELFGDNQLFAVLELKFAGSDMANFKFLNSEQSYYALQQIILALAVGEEEYQFEHRDLHLGNILIEYTNKKHIVCTFKSSNLTLLSKGVNVTIIDYTLSRVTINDCCYFNDLSRDEELFQATGDYQYDVYRMMRNELKNNWSSFSPKTNIIWLSYVIVKVLDSVKYKSINTKVHRMYIDKIKELKNIIMTFESASHCANYLFNLN", "sequence_length": 566, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bdbaace3cfefbe3980eabcfafebe361479b712cb40643cf3e085d0c9d9a664ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P83103.json", "taxon_id": "7227", "uniprot_accession": "P83103", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/histone-h3t3-kinase-activity-go0072354.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0072354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/histone-h3t3-kinase-activity-go0072354.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serine-threonine-protein-kinase-haspin-c-terminal-ipr024604.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024604", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serine-threonine-protein-kinase-haspin-c-terminal-ipr024604.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/haspin-kinase-pf12330.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12330", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/haspin-kinase-pf12330.yaml" } ], "pfam_ids": [ "PF12330" ], "protein_name": "Serine/threonine-protein kinase haspin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAASLPGPGSRLFRTYGAADGRRQRRPGREAAQWFPPQDRRRFFNSSGSSDASIGDPSQSDDPDDPDDPDFPGSPVRRRRRRPGGRVPKDRPSLTVTPKRWKLRARPSLTVTPRRLGLRARPPQKCSTPCGPLRLPPFPSRDSGRLSPDLSVCGQPRDGDELGISASLFSSLASPCPGSPTPRDSVISIGTSACLVAASAVPSGLHLPEVSLDRASLPCSQEEATGGAKDTRMVHQTRASLRSVLFGLMNSGTPEDSEFRADGKNMRESCCKRKLVVGNGPEGPGLSSTGKRRATGQDSCQERGLQEAVRREHQEASVPKGRIVPRGIDRLERTRSSRKSKHQEATETSLLHSHRFKKGQKLGKDSFPTQDLTPLQNVCFWTKTRASFSFHKKKIVTDVSEVCSIYTTATSLSGSLLSECSNRPVMNRTSGAPSSWHSSSMYLLSPLNTLSISNKKASDAEKVYGECSQKGPVPFSHCLPTEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFSSATDLLCQHSLFK", "sequence_length": 798, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "156a54656cbd089f3fa5dc90c7d33f1a96e549d5a7065e429a557db3a64d9e56", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TF76.json", "taxon_id": "9606", "uniprot_accession": "Q8TF76", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/histone-h3t3-kinase-activity-go0072354.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0072354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/histone-h3t3-kinase-activity-go0072354.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serine-threonine-protein-kinase-haspin-c-terminal-ipr024604.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024604", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serine-threonine-protein-kinase-haspin-c-terminal-ipr024604.yaml" } ], "pfam_ids": [ "PF12330" ], "protein_name": "Serine/threonine-protein kinase haspin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQAHPRSGTRLFRTYAARGVRGSQRQPGGLAEQWFQPPNLKRAFSSSLSDSNESPAVASDDPDDPDFPGSLVGQRRRRPRGSGSRNQRTLTNTPRVQRLRPRPPQKCSTPCSRLRPPPFPNCSPGCLGSDHSVCIQSRDSNELGTSASLFSSPASPGAPDPLYADSAVPGSFHLPAASLSEPSVPCPQVAATGDRYTGRALRAEASFRSSLFSLVNSGATEENKFGTDGENVKESCCERRQQMGNRLTDPDLTSPGKRKAACKKVVSQGVDQRDYEESSACKDLRVPGEISRPKRTGPLRKRKQQEATGTPPRHYHQSKKKRKASVSLWNLNTSQRDSWTKTRASFGFHKKKIITSVIEVCSSVASSSSRSLLSECSTPPIKNRAHLTVSSRCSSVYLLSPLKTLHVTDQRPSYAEKVYGECNQEGPIPFSDCLSTEKLERCEKIGEGVFGEVFQIINDQAPVALKIIAIEGLDLVNGSHQKTFEEILPEIIISKELSLLSSEAYNRTEGFIGLNSVHCVQGLYPPLLLKAWDHYNTTKRSANDRPDFFQEDQLFIILEFEFGGVDLERMKTKLSSVATAKSILHQITASLAVAEASLHFEHRDLHWGNVLLKKTNLKELRYTLNGKTSTIPTHGLQVNIIDYTLSRLERDGIVVFCDISAEEDLFTGEGDYQFEIYRLMRKENKNCWGEYHPYNNVLWLHYLTDKILNKMKFKTKCQSAAMKQIRKNLQHFHRTVLSFSSATDLLCQHSLFR", "sequence_length": 754, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c7f743908c94bff5749dbf26a6c207331e356ed679bed50407a216562a85dd2a", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z0R0.json", "taxon_id": "10090", "uniprot_accession": "Q9Z0R0", "uniprot_release": "2026_03" } ], "pfam_id": "PF12330", "short_name": "Haspin_kinase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12331", "short_name": "Rad26-like_helical_rpts", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12337", "short_name": "DUF3637", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12340", "short_name": "DUF3638", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hmg-wdhd1-pf24815.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24815", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hmg-wdhd1-pf24815.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/mcl1-mid-pf12341.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12341", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/mcl1-mid-pf12341.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/wd40-wdhd1-1st-pf24817.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24817", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/wd40-wdhd1-1st-pf24817.yaml" } ], "pfam_ids": [ "PF12341", "PF20946", "PF24815", "PF24817" ], "protein_name": "WD repeat and HMG-box DNA-binding protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/wd40-wdhd1-1st-pf24817.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24817", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/wd40-wdhd1-1st-pf24817.yaml" } ], "pfam_ids": [ "PF12341", "PF20946", "PF24815", "PF24817" ], "protein_name": "WD repeat and HMG-box DNA-binding protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPATQKPMRYGHTEGHTEVCFDDSGSYIVTCGSDGDVRMWEDLDDDDPKSVNVGEKAFSCALKNGKLVTAVSNNTVQVYTFPEGVPDGILTRFTTNANHVVFNGAGNKIAAGSSDFLVKVVDVMDNSQQQTFRGHDAPVLSLSFDPKDIFLASASCDGTVRVWNISDQTCAVSWPVLQKSNDVVNAKSICRLAWQPKAGKLLAVPVEKSVKLYRRETWSNPFDLSDSSISQTLNIVTWSPCGQYLAAGAINGLIVVWNVETKDCMERVKHEKGYAICGLAWHPTCSRICYTDVEGNLGVLENVCDLSGKVSSNKVSSRVEKDYNDLFDGDDTSSAGDFLNDNAVEIPSFSKGIINEDDDNDDIMLAADHDLGDDENSVDVTMLKADLSHKEEGDDDQARSIHNLPLIRPQRPFYDGPMPTPRQKPFQSSSTPLHLSHRFMVWNSVGIIRCYNDDQDSAIDVEFHDTSIHHATHLLNAFNYTMGTLSHEAILLACESADELASKLHCLHFSSWDSSKEWMVDMPQNEDIEAICLGLGWAAAATTALLLRLFTIGGVQKEVFCLPGPVVSMAGHGEQLCIVYHRGTGFDGDQCLGVQLLELGRKKNQVLHGDPLPLTRKSYLTWLGFSAEGTPCYVDSEGCVRMLNRGLGNTWTPVCNIREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAILSFKLPYCQTSTEKGQMEEQFWHSVLFHNYLDYLAKNGYDYEESIKNQAVKEQQELLMKMLALSCKLEREFRCVELADLMTQNAVHLAIKYASRSRKLILAQKLSELAAEKAAELAETQSEEEKEEDFREKLNAGYSHTTTEWSRPRVRSQVEDAEDREDTVSEEKPESHNHGQNLFQSANSSDTPALKSGAVFSSSQGWVNPFKVVVSSKEPAVSANSTRSANILDSMNKSSRKSTSLNRMENNEKSPVIKPLTPKPRSKQASAASYFQKRTPQADKTEEVKENPKSSSSDAPAVCLQNSENQRPKTGFQMWLEENRSQILSDNPDISDETDIIKEGMIRFRVLSAEERKAWTNKAKGETASDGAEAKKRKRVVSEICETENQEETVKENLDLSKKQKALNLPANQKLSAFAFKQ", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/establishment-of-sister-chromatid-cohesion-go0034085.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/wdhd1-cft4-helical-bundle-ipr048591.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048591", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/wdhd1-cft4-helical-bundle-ipr048591.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/wdhd1-cft4-second-beta-propeller-ipr022100.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022100", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/wdhd1-cft4-second-beta-propeller-ipr022100.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ctf4-c-pf20946.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20946", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ctf4-c-pf20946.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/mcl1-mid-pf12341.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12341", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/mcl1-mid-pf12341.yaml" } ], "pfam_ids": [ "PF12341", "PF20946" ], "protein_name": "DNA polymerase alpha-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSVIDKLVFDFGGKTLVSLAPDNNTLCVANKNGLTKILKTNNPEEEPETLDSSKLVSSIKCYSNSHFLMTTMQGDALRYNIDSSQEELLARFALPLRDCCVIHSGKMAVFGGDDLELILLELDDETHKKHAIKIDEQVSQISYNSQMNILAVSMINGKVQIFSLTSTIPNKVHELNDYIVANSYDDTHRDKILSNMMDDIDKDNDNDLSETADPDENNVADPEFCAANRICTRVAWHPKGLHFALPCADDTVKIFSIKGYSLQKTLSTNLSSTKAHFIDLQFDPLRGTYIAAVDLNNKLTVWNWETSEIHYTREFKRKITNIAWKIQADSKTLDLVLGTWSGSIAIVQNLAESVVSNIPDQSVAESSTKHGLFVDSESDLENLEGNDDINKSDKLFSDITQEANAEDVFTQTHDGPSGLSEKRKYNFEDEEDFIDDDDGAGYISGKKPHNEHSYSRVHKTHSFPISLANTGKFRYMPFSPAGTPFGFTDRRYLTMNEVGYVSTVKNSEQYSITVSFFDVGRFREYHFEDLFGYDLCFLNEKGTLFGQSKTGQIQYRPHDSIHSNWTKIIPLQAGERITSVAATPVRVIVGTSLGYFRSFNQFGVPFAVEKTSPIVALTAQNYRVFSVHYSQFHGLSYSLSELGTSSKRYYKRECPLPMSLPNINSDMKKDANLDYYNFNPMGIKSLFFSSYGDPCIFGSDNTLLLLSKWRSPEESKWLPILDSNMEIWKMSGGKETTDIHVWPLALAYDTLNCILVKGKHIWPEFPLPLPSEMEIRMPVFVKSKLLEENKAILNKKNEIGADTEAEEGEEDKEIQIPVSMAAEEEYLRSKVLSELLTDTLENDGEMYGNENEVLAALNGAYDKALLRLFASACSDQNVEKALSLAHELKQDRALTAAVKISERAELPSLVKKINNIREARYEQQLK", "sequence_length": 927, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "02e852319ebc562fd44e2e3e417f1d885ca099854a7332cee2473ce16a5812ea", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q01454.json", "taxon_id": "559292", "uniprot_accession": "Q01454", "uniprot_release": "2026_03" } ], "pfam_id": "PF12341", "short_name": "Mcl1_mid", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12342", "short_name": "DUF3640", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12345", "short_name": "DUF3641", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/birc6-pf12356.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/birc6-pf12356.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O88738", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00179", "PF00653", "PF12356" ], "protein_name": "Dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ff1c02e854d6a5bc6fd56098429641aa56267a22e07e25be2e7b477e4e026760", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVTGCGAAPPGTVTERLPSVIVLSAGRKMAAAAAEASGPSCSSAAAAAGAGAAGVSEWLVLRDGCMRCDADGLHSLSYHPALNAILAVTSRGTIKVIDGTSGATLQASALSAKPGGQVKCQYISAVDKVIFVDDYAVGCRKDLNGILLLDTALQTPVSKQDDVVQLELPVTEAQQLLSACIEKIDVSSTEGYDLFITQLKDGLKNTSHETAANHKVAKWATVTFHLPHHVLKSIASAIVNELKKINQNVAALPVASSVMDRLSYLLPSARPELGVGPGRSVDRALMYSEANRRETFTSWPHVGYRWAQPDPMAQAGFYHQPASSGDDRAMCFTCSVCLVCWEPTDEPWSEHERHSPNCPFVKGEHTQNVPLSVTLATSPAQLPSADGADRIACFGSGSCPQFLAAATKRGKICIWDVSKLMKVHLKFEINAYDPAIVQQLILSGDPSSGVDSRRPTLAWLEDSSSCSDIPKLEGDSDDLLEDSDSEEHSRSDSVTGHTSQKEAMEVSLDITALSILQQPEKLQWEIVANVLEDTVKDLEELGANPSLTNSKSEKTKEKHQEQHNIPFPCLLAGGLLTYKSPATSPISSNSHRSLDGLSRTQGESISEQGSTDNESCTNSELNSPLVRRTLPVLLLYSIKESDEKAGKIFSQMNNIMSKSLHDDGFTVPQIIEMELDNQEQLLLQDPPVTYIQQFADAAASLTSPDSEKWNSVFPKPGALVQCLRLPKFAEEETLCIDSITPCADGIHLLVGLRTCSVESLSAINQVEALNNLNKLNSALCNRRKGDLESNLAVVNGANISVIQHESPADVPEHLLIRPEQRNVVSGGYLVLYKMNYTTRIVTLEEEPVKIQHIKDPQDTITSLILLPPDILDNREDDCEEPAEEMQLASKNGIEREKKSDISTLGHLVVTTQGGYVKVLDLSNFEILAKVEPPKKEGTEEQDTFVSVIYCSGTDRLCACTKGGELHFLQIGGTCDDIDEADILVDGSLSKGIEPALEGSRPLSNPSSPGISGVELLVDQPFTLEILTSLVELTRFETLTPRFSATVPPCWVEVQQEQQQRRHPQHLHQQHHGDAAQHTRTWKLQTDSNSWDEHVFELVLPKACMVGHVDFKFVLNSNITSVPQIQVTLLKNKAPGLGKANALNIEVEHNGNPSLVDLNEEMHHMDVEESQCLRLCPFLEDHKEDILCGPVWLASGLDLSGHAGMLTLTSPKLVKGMAGGKYRSFLIHVKAVSDRGAADEMCSSGLRPVVRLPSLKQQGHKGYSLASLLAKVAAGKEKSSNVKNENAGGTRKSENLRGCDLLQEVSVTIRRFKKTSICKERVQRCAMLQFSEFHEKLLNTLCRRSDDGQVTEHAQSLVLDALCWLAGVHSNGSGSSKEGNECLLSKTRKCLSDIVRVCFFEAGRSIAHKCARFLALCISNGKCEPCQPGFGSVLLKALLDNMCFLPAAATGGSVYWYFVLLNYVKDEDLAGCSTACAALLTAVSRQLQDRLTPLEALLQTRYGLYSSPFDPVLFDLEMSGSSWKTVYSSSTAVQSDEIDLSDVLSGNGRVSSCTAAEGSFTSLTGLLEVEPLHFTCVSTSDGTRIERDDASTFTVSSFGVPPAVGGLSSGTVGEASTALSSAAQVALQSLSHAMASAEQQLQVLQEKQQQLLKLQQQKAKLEAKLHQTTAAAAAAASAAAAAAAGPVHNAVPSNPVAAPGFFIHPSDVIPPTPKTTPLFMTPPLTPPNEAVSVVINAELAQLFPGSVIDPPAVNLAAQNKNSSKSRMNPLGSGLALAISHASHFLQPPPHQSIIIERMHSGARRFVTLDFGRPILLTDVLIPTCGDLASLSIDIWTLGEEVDGRRLVVATDISTHSLILHDLIPPPVCRFMKITVIGRYGSTNARAKIPLGFYYGHSYILPWESELKLMHDPLRGEGESASQPEIDQHLAMMVALQEDIQCRYNLACHRLEALLQSIDLPPLNSANNAQYFLRKPDKAVEEDSRVFSAYQDCIQLQLQLNLAHNAVQRLKVAIGASRKLLNETSGPEDLIQTSSTEQLRTIVRYLLDTLLSLLHSSNGHSVPAVLQSTFHAQACEELFKHLCISGTPKIRLHTGLLLVQLCGGERWWGQFLSNVLQELYNSEQLLIFPQDRVFMLLSCIGQRSLSNSGVLESLLNLLDNLLSPLQPELSMHRRTEGVLDIPMISWVVMLVSRLLDYVATVEDEAAAAKKPLNGKDRERFLTGNQWSFINNNLHTQNLNRSSKGGSSLDRLYSRKIRKQLVHHKQQLNLLKAKQKALVEQMEKEKIQSNKGSSYKLLVEQAKLKQATSKHFKDLIRLRRTAEWSRSNLDTEVTTTKESPEIEPLPFTLAHDRCISVVQKLVLFLLSMDFTCHADLLLFVCKVLARIANATRPTIHLCEIVNEPQLERLLLLLVGTDFNRGDISWGGAWAQYSLTCMLQDILAGELLAPVAAEAMEECTVSEDVGATAGDSDDSLQQSPAQLLETIDEPLTHEIAGTPPLSSLEKDKEIDLELLQDLMEVDIDPLDIDLEKDPLAAKVFKPISSTWYDYWGADYGTYNYNPYIGGLGMPVAKPPSNTEKNGSQTVSVSVSQALDARLEVGLEQQAELMLKMMSTLEADSILQALTNTSPTFSQSPTGTDDSLLGNLQPANQNSQLMIQLSSVPMLNVCFNKLFSMLQVHHVQLESLLQLWLTLSLNSSSSGNKENGADIFLYNANRIPVISLNQASIASFLTVLAWYPNTLLRTWCLVLHSLTLMTNMQLNSGSSSSIGIQETTAHLLVSDPNLIHVLVKFLSGTSPHGTNQHSPQVGPTATQAMQEFLTRLQVHLSSTCPQIFSELLLKLIHILSTERGAFQTGQGPLDAQVKLLEFTLEQNFEVVSVSTISAVIESVTFLVHHYITCSDKVMSRSGSDSSAGARACFGGLFANLIRPGDAKAVCGEMTRDQLMFDLLKLVNILVQLPLSSNREYSARVSVTTNTTDSVSDEEKVSGGKDVNGSSASTPGSPACVADLVLANQQIMSQILSALGLCNSSAMAMIIGASGLHLTKHENFHGGLDAISVGDGLFTILTTLSKKASTVHMMLQPILTYMACGYMGRQGSLATCQLSEPLLWFILRVLDTSDALKAFHDMGGVQLICNNMVTSTRAIVNTARSMVSTIMKFLDSGPNKAVDSTLKTRILASEPDNAEGIHNFAPLGTITSSSPTAQPAEVLLQATPPHRRARSAAWSYIFLPEEAWCDLTIHLPSAVLLKEIHIQPHLASLATCPSSVSVEVSADGVNMLPLSTPVVTSGLTYIKIQLVKAEVASAVCLRLHRPRDASTLGLSQIKLLGLTAFGTTSSATVNNPFLPSEDQVSKTSIGWLRLLHHCLTHISDLEGMMASAAAPTANLLQTCAALLMSPYCGMHSPNIEVVLVKIGLQSTRIGLKLIDILLRNCAASGSDPTDLNSPLLFGRLNGLSSDSTIDILYQLGTTQDPGTKDRIQALLKWVSDSAKMAALKRSGRMNYMCPSSSAVEYGLLMPSPSHLHCVAAILWHSYELLVEYDLPALLDRELFELLFNWSMSLPCNVVLKKAVDSLLCSMCHIHPNYFSLLMGWMGIIPPPVQCHHRLSMTDDSKKQDLSSSLTDDSKNAQAPLSLTESHLATLASSSQSPEAIKQLLDSGLPSLLVRSLASFCFSHISYSESIAQSVDNSQDKLRRHHVPQHCNKMPITADLVAPILRFLTEVGNSHIMKDWLGGSEVNPLWTALLFLLCHSGSTAGGHNLGAQQSSTRSASHSSATTTVLTTQQRTAIENATVAFFLQCISCHPNNQKLMAQVLCELFQTAPQRGSLPTSGNISGFVRRLFLQLMLEDEKVTMFLQSPCPLYKGRINATSHVIQHPMFGAGHKFRTLHLPVSTTLSDVLDRVSDTPSITAKLISEQKDDKEKKNHEEKEKVKAENGFQDNYSVVVASGLKSQSKRAMASTPPRPPSRRGRTIPDKIGSASSSADAASKIITVPVFHLFHRLLAGQPLPAEMTLAQLLTLLYDRKLPQGYRSIDLTVKLGSKVITDPSLSKTDSFKRLHPEKDHGDLVGSCPEDEALTPSDECMDGVLDESLLETCPIQSPLQVFAGMGGLALIAERLPMLYPEVIQQVSAPVIASTTQEKPKDSDQFEWVTIEQSGELVYEAPETIAAEPPPVKSAVQATSPIPAHSLAAFGLFLRLPGYAEVLLKERKHAQCLLRLVLGVTDDGEGSHILQSPSANVLPTLPFHVLRSLFSATPLTTDDGVLLRRMALEIGALHLILVCLSALSHHAPRVPNSSLSQTEPQVSNSHNPTSAEEQQLYWAKGTGFGTGSTASGWDVEQALTKQRLEEEHVTCLLQVLASYINPMSGAVNGEAQASPESRAQNSSALPSVLLELLSQSCLIPAMSSYLRNDSVLDMARHVPLYRALLELLRAIASCTSMVPLLLPLSTENGEEEEDEQSECQTSVGTLLAKMKTCVDTYTNRLRSKRENVKAGVKPDAPDQEPEGLALLVPDIQRTAEIVHAATANLRQANQEKKLGEYSKKVVMKPKPLSVLKSLEEKYVAVMKKLQFDTFEMVSEDDDGKLGFKVNYHYMSQVKNANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRIELMAQCEEWIADIQQYSSDKRVGRTMSHHAAALKRHTAQLREELLKLPCPEGLDPDIEDASPVCRATAGAEDTLTHDHVNPSSSKDLPSDFQL", "sequence_length": 4882, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ff1c02e854d6a5bc6fd56098429641aa56267a22e07e25be2e7b477e4e026760", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O88738.json", "taxon_id": "10090", "uniprot_accession": "O88738", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/baculoviral-inhibition-of-apoptosis-protein-repeat-domain-found-in-inh-cd00022.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd00022", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/baculoviral-inhibition-of-apoptosis-protein-repeat-domain-found-in-inh-cd00022.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/ubiquitin-conjugating-enzyme-e2-catalytic-ubcc-like-domain-of-baculovi-cd23810.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd23810", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/ubiquitin-conjugating-enzyme-e2-catalytic-ubcc-like-domain-of-baculovi-cd23810.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/birc6-pf12356.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/birc6-pf12356.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/bir-repeat-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50143", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/bir-repeat-2.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/bir-repeat-ipr001370.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR001370", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/bir-repeat-ipr001370.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/inhibitor-of-apoptosis-protein-2mihbc-iap-1-chain-a-1-10-1170-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.1170.10", "section": "canonical_examples", "url": 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"MGKRAGGAAAAAAAASTSSAAGLEPAAGRGGGPRSAAAGLLGALHLVMTLVVAAARAEKEAFIQSESIIEVLRFDDGGLLQTETTLGLGSYQQKSISLYRGNCRPIRFEPPMLDFHEQPVGMPKMEKVYLHNPSSEETITLVSISATTSHFHASFFQNRKILPGGNTSFDVVFLARVVGNVENTLFINTSNHGVFTYQVFGVGVPNPYRLRPFLGARVPVNSSFSPIINIHNPHSEPLQVVEMYSSGGDLHLELPTGQQGGTRKLWEIPPYETKGVMRASFSSREADNHTAFIRIKTNASDSTEFIILPVEVEVTTAPGIYSSTEMLDFGTLRTQDLPKVLNLHLLNSGTKDVPITSVRPTPQNDAITVHFKPVTLKASESKYTKVASISFDASRAKKPSQFSGKITVKAKEKSYSKLEIPYQAEVLDGYLGFDHAATLFHIQDSPADPVERPIYLTNTFSFAILIHDVLLPEEARIMFQVHNFSQPVLILPNESGYIFTLFFMPSTSSMHIDNNILLVTNASKFHLPVRVYTGFLDYFVLPPKIEERFIDFGVLSATEASSILFAIINSNPIELAIKSWHIIGDGLSIELVATERGNRSTVIASLPELERSSLPDQSPVTLASGHFAVFRVKLTAKKLEGVHDGAIQITTDYEILTIPVKAVIAVGSLTCFPKHMVLPPSFPGKIVHQSLNIMNSFSQKVKIQQIRSLSEDVRFYYKRLRGNREDLEPGKKSKIANIYFDPGLQCGDHCYIGLPFLSKSEPKVQPGVAMQEDLWDADWDAHQSLFKAWMGIKENAGHRLNAMFEVNTDLQKNIVSKVSAELSWPSVLSSPRLLKFPLTNTNCSSEEEISLENPADVPVYVQFIPLALYSNPSVFADKLVSRFNLSKVAKLDLRTLEFQVYRNSAHPLQSPTGFTEGLSRHFILNLILKPGEKKSVKVKFTPLHNRTVSSLIIVRNNLTVMDAVMVQGQGTTENLRVAGKLPGPGSSLRFKITEALLKDCIDRLKLREPNFTLKRTFKVENTGQLEIRVETIEISGYACEGYGFKVVNCQEFALSANASRDIVILFTPDFTASRVIRELKFVTSSGSEFVFVLNASLPYHMLAACAEALPRPNWELALYIIISGVMSALFLLVIGTAYLEAQGIWEPFRRRLSFEASNPPFDVGRPFDLRRIVGISSEGNLNTLGCEHSHGRGFYSNASSRPGTGSHRQCGTSVHPHSSHGSKNSADVDNVRTRNSSSMSSRTSPQAAASQSTSKTSPLVSETAAATQGHTASRKSRGAKQGQHSSQHHSHSHSPLEQHSQPPPPVPQHQEPPPERLSPAPLTHPSHPERASTTRHSSEDSDITSLIEAMDKDFDHHDSSPLDVFTEQPPSPMSKSKGKGKSLQQRKAKPPKKQEEKEKRGKGKPQEDELKDALADDDSSSTTTETSNPDTEPLLREDTEKHKGRPAVPEKQESELSQGKPKSKKLLNAKKEIPTDVKGSSFELPYTPSLENKQRRNLPTKIPLPTTLASGSKSRNPPKTKGTNKLVENRPVALSKFLPSSQELGNTSSSEGEKDSPPPEWDAVPVHKPSSSTDSLYKLSLQTLNADIFLKQRQTSPTPASPSLPTAPCPFTSRGSYSSVVNSSGSDTKAKQTSSSKSKLTKAASLPGKNGNPTFAAVAAGYDKSPGGNGFAKISSNKSDFSSSLGISHIPVDSDGSDSSGLWSPVSNPNSPDFTPLNSFSAFGNSFNLTGAVFSKLSRSCSQSSQRSWNEFNSGPSYLWDSPATDPSPSWPASSSSPTHTATSILGNSSGLWSTTPFSSSIWSSNINSNLPFSTPTNALSSISLMGTENSAAAHTPSASGPADDLGQTYNPWRIWSPTVGRRSSDPWSNSHFPHEN", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tmem131l-fourth-ig-like-domain-ipr055436.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transmembrane-protein-131-like-n-terminal-ipr022113.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022113", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transmembrane-protein-131-like-n-terminal-ipr022113.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-tmem131-2-pf24495.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24495", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-tmem131-2-pf24495.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-tmem131l-4-pf24499.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24499", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-tmem131l-4-pf24499.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-tmem131l-5-pf24501.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24501", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-tmem131l-5-pf24501.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tmem131-like-n-pf12371.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12371", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tmem131-like-n-pf12371.yaml" } ], "pfam_ids": [ "PF12371", "PF24495", "PF24499", "PF24501" ], "protein_name": "Transmembrane protein 131 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVPSIHKTSNRYRTIYFFLISLLITSTFADQQAWPLPEEVSASQLHEIPVLHTAFVQIGEELHYLNHPIRPENVHQLPVYDSIKGVCEGNCPKEANKNHATKTFNVLKLSGKGKLPMEMDPPMMDFGQNSVGTAQKRKIYIRNMRNEQIFLDAVVVNSIEFQASYFEQYKLEPHGVTSLEVVFLPREIGKRSTIVHFYTSVGVFTYKMQGNCDSNPYRISPFTGYRLPMNSSISKPIVIFNPYAYTMRITEIGTSGGNAHIELPHEVDSKLAEEPLQYWDIRPYQSKQIATLVLVGATSENSTVFVRIGSEIYLSSEHRKPNTDIYLTVPIEVLKRRGVYATDEILDFGLIRQGMKSEAKVFSVVQYQIGGRLEFETLYVEKGDHTAIYMEFASHPPIIVYPPTKGSVTLGPKADLVKVYLEGNRVQMSPQQQMKHISGHIIAVSRGGNYNVSIPYRADVFRGDLLPIGNDLSIQEDLRPPHQRIIRIENQLPFDVAIFNITLAPELVSHFSVRLIDRTALIRSGHISPVFVLKYNKKLPPTFDNSTIYLHTNVSTFNLSLSTYTGRMNVELISVDKNSFDFGFVERNDTRTIRFVVWNHNRAEMRLKNLAVPHRSAYRLYEVGVKSIGNFSDVRNDERLEYVEATDVDIPPMKGKIFDLELKVPSDGVVRNGNIIFETDLESKIFGVTYQVSTGSLQSIPEEICFGQTFPSKLVYRTLQVFNSFDEDMTVTRLTTLNEDPRFFFEGFDPKNPPVLRSGRLTNLGRVMFSPSAPCEHDYCYLGLPLGSSDGAWFTHGLTLPSNLPEIDSYLYKQLRKKYDALVNSGKHHINTTIILDTDKAKNIKIKTSAELVWPRLLTRNSIHFPLTALGNFTIVNLTLANPTNVPVAIQVIPLVIYPDAESLVELMRPNLVSELTDHVEMNETLMFSLRDTELFTLKSDSPVPKLREAFEYHLNHEMPRYNNEINIPRFTLSMILKPHMKIRLRLGFLPSDYTLRSSLLLIRNNLTAIEPVVMYGKGARIGVKVEGAEARSKKPLLFEIRHDHLTDCNNPKRLMHKLHSTLTVRRPFQVMNSGEVQFTVTNMSINGVPCENRGFRILNCYPFRLQPNETYALDIAYTPDFLTTTNEADLQLYMHMNGSAWIFPLASTVPGDMLAKCHQALPRPPFENIMYYSCVTALIFCLVCVLACAYLEGDRAIAVAIRQQFAIPRHVFDLNNLNKNNSTTTPVPTVPSTAKPESSIKKPTPATRPSTLRASSDAWLISRLLIGLANFIVKCVHLFWKWSLFWRREKADDKQSKSAKVTKKKNPVTMQKVEEFRQMLEYVGQQKRQQNSGELAPEFDEVEEEELAEMWAQRKDSGAQSSVVTDPEPPMSKSQRKKKRAAQQKENNNLEAPIIVQPVVQSPPVQNKMEPAKKTTPGPSPKPKGNNQRKKHVQVPPVTKTPVTPKTSIPPPTEPEKPIKPSEQKKPNAIPVERPKQPTPSKARTPSKTPSQSNRAQHPASSPAPIAPTSAPTDDFVHVPPTSLTSPDLFYRQFLSSMGMPMDAGMWDTPAAQAAMPFMNLWNYGGPLSAEQMEDLIRQASGVAPITNDSEGTTVTTPSDIGMTWGTSGHLGGDEESIGGEAAPDWIDEDVNVDDAEMDFSSMSAASKDIFKDDDIDNFNQQMKRQRSPSQASSTLSRKLENSPQKMGSRRLTIGSEKKNNQSSSSALNPNYDFTRTPGNPNRMQMSQNSIQPAPPATSIWGDNSNSDPWGTNTVSNPLSELEDDPLSLSHLGINLASTESSATGPMFTMFSGPEFNLWSSSSLFHPPTQQPSTSQMPQDTDNENDEKNN", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tmem131l-third-ig-like-domain-ipr055435.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transmembrane-protein-131-like-n-terminal-ipr022113.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022113", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transmembrane-protein-131-like-n-terminal-ipr022113.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transmembrane-protein-131-like-second-ig-like-domain-ipr045695.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045695", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transmembrane-protein-131-like-second-ig-like-domain-ipr045695.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-tmem131l-3-pf24498.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24498", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-tmem131l-3-pf24498.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tmem131-like-n-pf12371.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12371", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tmem131-like-n-pf12371.yaml" } ], "pfam_ids": [ "PF12371", "PF19532", "PF24498", "PF24499", "PF24501" ], "protein_name": "Transmembrane protein 131-like", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"MATLEKLMKAFESLKSFQQQQQQQPPPQAPPPPPPPPPQPPQPPPQGQPPPPPPPLPGPAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCSNDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIKVLLKAFIANLKSSSPTVRRTAAGSAVSICQHSRRTQYFYNWLLNVLLGLLVPMEEEHSTLLILGVLLTLRCLVPLLQQQVKDTSLKGSFGVTRKEMEVSPSTEQLVQVYELTLHHTQHQDHNVVTGALELLQQLFRTPPPELLQALTTPGGLGQLTLVQEEARGRGRSGSIVELLAGGGSSCSPVLSRKQKGKVLLGEEEALEDDSESRSDVSSSAFAASVKSEIGGELAASSGVSTPGSVGHDIITEQPRSQHTLQADSVDLSGCDLTSAATDGDEEDILSHSSSQFSAVPSDPAMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGADSQYLGMQIGQPQEDDEEGAAGVLSGEVSDVFRNSSLALQQAHLLERMGHSRQPSDSSIDKYVTRDEVAEASDPESKPCRIKGDIGQPNDDDSAPLVHCVRLLSASFLLTGEKKALVPDRDVRVSVKALALSCIGAAVALHPESFFSRLYKVPLNTTESTEEQYVSDILNYIDHGDPQVRGATAILCGTLVYSILSRSRLRVGDWLGNIRTLTGNTFSLVDCIPLLQKTLKDESSVTCKLACTAVRHCVLSLCSSSYSDLGLQLLIDMLPLKNSSYWLVRTELLDTLAEIDFRLVSFLEAKAESLHRGAHHYTGFLKLQERVLNNVVIYLLGDEDPRVRHVAATSLTRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYSLLPSITDVTMENNLSRVVAAVSHELITSTTRALTFGCCEALCLLSAAFPVCTWSLGWHCGVPPLSASDESRKSCTVGMASMILTLLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWTSEEEANSAATRQEEIWPALGDRTLVPLVEQLFSHLLKVINICAHVLDDVTPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQASTPMSPKKVGEASAASRQSDTSGPVTASKSSSLGSFYHLPSYLKLHDVLKATHANYKVTLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEVLGYLKSCFSREPMMATVCVQQLLKTLFGTNLASQFDGLSSNPSKSQCRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQERDASGWFDVLQKVSAQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQVADIILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFITPSTMASVSTVQLWISGILAILRVLISQSTEDIVLCRIQELSFSPHLLSCPVINRLRGGGGNVTLGECSEGKQKSLPEDTFSRFLLQLVGILLEDIVTKQLKVDMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATRLFTSDGCEGSFYTLESLNARVRSMVPTHPALVLLWCQILLLINHTDHRWWAEVQQTPKRHSLSCTKSLNPQKSGEEEDSGSAAQLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLISLSHEPPVQDFISAIHRNSAASGLFIQAIQSRCENLSTPTTLKKTLQCLEGIHLSQSGAVLTLYVDRLLGTPFRALARMVDTLACRRVEMLLAANLQSSMAQLPEEELNRIQEHLQNSGLAQRHQRLYSLLDRFRLSTVQDSLSPLPPVTSHPLDGDGHTSLETVSPDKDWYLQLVRSQCWTRSDSALLEGAELVNRIPAEDMNDFMMSSEFNLSLLAPCLSLGMSEIANGQKSPLFEAARGVILNRVTSVVQQLPAVHQVFQPFLPIEPTAYWNKLNDLLGDTTSYQSLTILARALAQYLVVLSKVPAHLHLPPEKEGDTVKFVVMTVEALSWHLIHEQIPLSLDLQAGLDCCCLALQVPGLWGVLSSPEYVTHACSLIHCVRFILEAIAVQPGDQLLGPESRSHTPRAVRKEEVDSDIQNLSHVTSACEMVADMVESLQSVLALGHKRNSTLPSFLTAVLKNIVISLARLPLVNSYTRVPPLVWKLGWSPKPGGDFGTVFPEIPVEFLQEKEILKEFIYRINTLGWTNRTQFEETWATLLGVLVTQPLVMEQEESPPEEDTERTQIHVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQPRNKPLKALDTRFGRKLSMIRGIVEQEIQEMVSQRENTATHHSHQAWDPVPSLLPATTGALISHDKLLLQINPEREPGNMSYKLGQVSIHSVWLGNNITPLREEEWDEEEEEESDVPAPTSPPVSPVNSRKHRAGVDIHSCSQFLLELYSRWILPSSAARRTPVILISEVVRSLLVVSDLFTERTQFEMMYLTLTELRRVHPSEDEILIQYLVPATCKAAAVLGMDKTVAEPVSRLLESTLRSSHLPSQIGALHGILYVLECDLLDDTAKQLIPVVSDYLLSNLKGIAHCVNIHSQQHVLVMCATAFYLMENYPLDVGPEFSASVIQMCGVMLSGSEESTPSIIYHCALRGLERLLLSEQLSRLDTESLVKLSVDRVNVQSPHRAMAALGLMLTCMYTGKEKASPGRASDPSPATPDSESVIVAMERVSVLFDRIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHSAGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFLVSASTSPWVSAILPHVISRMGKLEQVDVNLFCLVATDFYRHQIEEEFDRRAFQSVFEVVAAPGSPYHRLLACLQNVHKVTTC", "sequence_length": 3119, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "af11f1d9e5600b8e50a087cef60030c21df08e7ce7753da1850f71881e7b70c7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P42859.json", "taxon_id": "10090", "uniprot_accession": "P42859", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/htt-bridge-pf20925.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20925", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/htt-bridge-pf20925.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/htt-c-heat-pf20927.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20927", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/htt-c-heat-pf20927.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/htt-n-heat-1-pf20926.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/htt-n-heat-1-pf20926.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/htt-n-heat-pf12372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/htt-n-heat-pf12372.yaml" } ], "pfam_ids": [ "PF12372", "PF20925", "PF20926", "PF20927" ], "protein_name": "Huntingtin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKAFESLKSFQQQQQQQQPPPQPPPPPPPPPQPPQPPPQGQPPPPPPLPGPAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCSDDASRRRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIKVLLKAFIANLKSSSPTVRRTAAGSAVSICQHSRRTQYFYNWLLNVLLGLLVPMEEDHPTLLILGVLLTLRCLVPLLQQQVKDTSLKGSFGVTRKEMEVSPSAEQLVQVYELTLHHTQHQDHNVVTGALELLQQLFRTPPPELLQALTTPGGLGQLTLVREEAGGRGRSGSIVELLAGGGSSCSPVLSRKQKGKVLLGEEEALEDDSESRSDVSSSAFAASVKSEIGGELAASSSGVSTPGSVGHDIITEQPRSQHTLQADSVDLSGCDLTSAATDGDEEDILSHSSSQFSAVPSDPAMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGADSQYLGVQIGQPQEEDREAAGVLSGEVSDVFRNSSLALQQAHLLERMGHSRQPSDSSVDKFVSKDEVAEAGDPESKPCRIKGDIGQPNDDDSAPLVHCVRLLSASFLLTGEKKALVPDRDVRVSVKALALSCIGAAVALHPESFFSKLYKVPLSTMESTEEQYVSDILNYIDHGDPQVRGATAILCGTLVYSILSRSRLRVGDWLGTIRALTGNTFSLVDCIPLLQKTLKDESSVTCKLACTAVRHCVLSLCSSSYSDLGLQLLIDMLPLKNSSYWLVRTELLETLAEIDFRLVSFLEAKAESLHRGPHHYTGFLKLQERVLNNVVIYLLGDEDPRVRHVAATTLTRLVPKLFYKCDQGQADPVEAVARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYSLLPSVTDVTMENNLSRVVAAVSHELITSTTRALTFGCCEALCVLSAAFPVCTWSLGWHCGVPPLSASDESRKSCTVGMASMILTLLSSAWFPLDLSAIQDALILAGNLLAASAPKSLRSSWASEEEGSSAATRQEEIWPALGDRTLVPMVEQLFSHLLKVINICAHVLDDETPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQTSTPMSPKKGGEASTASRQSDTSGPVTASKSSSLGSFYHLPSYLRLHDVLKATHANYKVTLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEVLGYLKSCFSREPMMATVCVQQLLKTLFGTNLASQFDGLSSNPSKSQCRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQADQEHDASGWFDVLQKVSAQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQVADIILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFITPSTMASVSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCPVINRLRDGDSNPTLGERSRGKQVKNLPEDTFSRFLLQLVGILLEDIVTKQLKVDMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATRLFTSDGCEGSFYTLDSLNARVRAMVPTHPALVLLWCQILLLINHTDHRWWAEVQQTPKRHSLSCTKSLNPQISAEEDSGSAAQLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLISLSHEPPVQDFISAIHRNSAASGLFIQAIQSRCENLSTPTTLKKTLQCLEGIHLSQSGAVLTLYVDRLLGTPFRALARMVDTLACRRVEMLLAANLQSSMAQLPEEELNRIQEHLQNTGLAQRHQRLYSLLDRFRLSTVQDSLSPLPPVTSHPLDGDGHTSLETVNPDKDWYLQLVRSQCWTRSDSALLEGAELVNRIPAEDMSDFMMSSEFNLSLFAPCLSLGMSEIAGSQKSPLFEAARRVTLDRVTNVVQQLPAVHQVFQPFLPTEPTAYWSKLNDLFGDTTSYQSLTTLARALAQYLVVLSKVPAPLHLPPEKEGHTVKFVVMTLEALSWHLIHEQIPLSLDLQAGLDCCCLALQVPGLWGVLSSPEYVTHTCSLIHCVRFILEAIAVQPGDQLLGPESRSHTPRAVRKEEVDSDIQNLSHITSACEMVADMVESLQSVLALGHKRNSTLPSFLTAVLKNIVVSLARLPLVNSYTRVPPLVWKLGWSPKPGGDFGTVFPEIPVEFLQEKEVLKEFIYRINTLGWTSRTQFEETWATLLGVLVTQPLVMEQEESPPEEDTERTQIHVLAVQAITSLVLSAMAVPVAGNPAVSCLEQQPRNKPLKALDTRFGRKLSMIRGIVEQEIQEMVSQRENTATHHSHQAWDPVPSLLPATTGALISHDKLLLQINSEREPGNMSYKLGQVSIHSVWLGNNITPLREEEWDEEEEEEADAPAPTSPPVSPVNSRKHRAGVDIHSCSQFLLELYSRWILPSSAARRTPVILISEVVRSLLVVSDLFTDVPQFEMMYLTLTELRRVHPSEDEILIQYLVPATCKAAAVLGMDKTVAEPVSRLLESTLRSTHLPSQIGALHGILYVLECDLLDDTVKQLIPVVSDYLLSNLKGIAHCVNIHSQQHVLVMCATAFYLMENYPLDVGPEFSASVIQMCGVMLSGSEESTPSVIYHCALRGLERLLLSEQLSRLDTESLVKLSVDRVNVQSPHRAMAALGLMLTCMYTGKEKASPGRASDPSPATPDSESVIVAMERVSVLFDRIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHSAGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFLVSASTSPWVSAILPHVISRMGKLEQVDVNLFCLVATDFYRHQIEEEFDRRAFQSVFEVVAAPGSPYHRLLACLQNVHKVTAC", "sequence_length": 3110, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "04b62ea2f14ec8f9f9e9880b99eba8c8a0689a7d11cd412231f00290fbfc957b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P51111.json", "taxon_id": "10116", "uniprot_accession": "P51111", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyostelium discoideum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/htt-c-heat-pf20927.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20927", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/htt-c-heat-pf20927.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/htt-n-heat-1-pf20926.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/htt-n-heat-1-pf20926.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/htt-n-heat-pf12372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/htt-n-heat-pf12372.yaml" } ], "pfam_ids": [ "PF12372", "PF20926", "PF20927" ], "protein_name": "HD protein homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLIRGLDILSASPIDTEDQNLRKEKIEACRTISEQICAPSLRNTADFPRFLSIAISLLLRAHGDKDLNVYSVAEESLNRTIKILVYSYHERILFELFKVLKGKPHQHNNEKRLSTNLTDHLSQNSVTPSVPTTPNYQQSPSTQSPSHSTSNSSNNLYNNFSSNSNSNSNSNSNSSSNNNSGNTTPGNNTNNSNGNANSIFNTANQILSKPFPLKSQRIALIKFGEICSFIRPSKCRKYILSLVPPINSLLSIIEDESLQESISISMENISKILIPYLKENEVHQLIDLFSRNLQQPSAAVRRAASLSITSICRYHPRPLFEFTIEFLYNFTFPNSPPISSITSASCIPASSNTNTLQNSKILGVLFSYLQLIKLAEELSSNDIKILDGFSLKIQFFVHFILKYIQVPIDGEPYDHNIVGLSLELLQQLLVTFGPYEYSWPKPLVREVIAQLRHLCFNQQSSIRVSLKAVVLNCLAQSVKFFPKLFNDEFFKHQPSTIDSNTVTSAEDHICRDYLLNISPSDLNFKLFTPITQQQQQQQQQQQQQQQQQQQHNLTSSTMSGINSTTGVSNHTFSLEPKEEFLYYLNDSDPLLRGGTALMIGCLIRGYLETDHITSNQIYPTNIALLEDNLSIPTLLIFLLRALMDSSSITAKLACTGISECLPILSQSKFSDWALVTLRHLLCVSSSTYWLVKLEILETLSMIDYIVIEYLEQNIQQKSNVMNVVINGPNLSISTSSIKINENNNNSNNSNNNKNNSETGGAVAIPIQSKVLDFLIEQLSDNDFRVRNSAGKSLVRVIPKLVFTAPLERHSMKGISSKVRETFDVQDYENTVLRKRKIFANLSHVIGLLVNQLSNPHPDDKIRGCYGALNLICKTYSFPPDTPEQCRTLSSVLANPMLSFVGDILPLALDRVGLTWVATDFDVHIDIIEILGYLSRGAENVLGTYCHNVLRHIVRIINIATNIIQFRPTPPLKEVKSNPSGIHVNSPLLKAPTHLGSFTHSIHYIKLYSKLLTARINSITIFGIDRFSQLRQACFETLSVMLKCAGKTILPYTEEIIGYLTTHFEQEPVSVIKCINELFLVTMKPTPIVSISSLSQKSRDLNIGGGFISTGGGGGGGSGGINSSSSSLKQYEPRSIESHSSSSNSHDEMFLNSRSVFSSLLTFGTPNLKQHYDFINEVPSSHNINYSYSNSEINRIISNEDRKLNFKLFEPLIIGSMIEYQTTHSHELKIAILLMLSKLSKFGLDLSLFDKENHFPTYFIEELKETHCLLSKPNQVLSYSYDLLGSMFIYRKLFPDSSVSIDDIKKLFFQPPPQQQQQTNQNKSQSLNSTPNISSNNNNNNNNNNNNNNNNNNNNNNNSNSSQSLNNSTVIGNNSSHPYSYTIPTIIENCHSFVRYLYDPNDKYPDTDFRERFLSFLLSNLQYSQTIDILILIVTIVQPNSTLHQKFSQQISHQLFTNLSLGDSPFFIINSIEEVERLYVLIDKLHSSSLSAARWADALLSVSPQFVNKSTSSSSSSSSTATSPSSSSSSTTTTTTTSTNTTTTTPSDPLIRKRILLLRESILEAYELRWLPPLLVLLRTGCKLPEEARISAARQSRFLSNHDNKHQPGPSAAIISTLLLKLIRNAVSVFSLYKPKNVLFTQLINHLLYYSSIFFNKNLVPHISAQSLSNSPNFGATNTTTGSGSVSPLSSSSSSTITVTTMAMGSSLMKQPSSSLLLSPTVGGSSSTINLFMDSLKGILALDNGTIIQEITTSLLSYGGTSTSIHAVKLLLLLGRLPNQQVIEGADLVWKQYALSNNWQSCGCEHFLTHHIIFLLYCQSIVVLKSQNIELSETFLDKIVLLINESTVKKLIEFLVKGGSNSDQNQYIEIFTQHLVKIFSRVSNSLDLRKKQKLLRLLSYLPANRETLELLIVNFLQTDDISLQVSGERILNLNINNLIETYGPQNSLEIIQELYQIFMSNFVKSTTNQSVQSLFLKLIKNLSPSSAYQGITPTHNNVIEKLKEKELTNNNNNNNNNIIEKEEEEKEKEKEKVKEEEEGNNIEKLIQLQIETIKKNNQISDLKTVPWDYFVELIKSRYYSNNLNQHSFNNISILSQIDKDATISLLESKSLDGTLLPAFISSVYSLEFQDEIQAYLLKKVDTLLGLAGEIGTDPLKGGPPFLSDSVWDELRETTRCLSNFINKFGLGELCESKLLKVSTWAFIESFRRWRAEIINPYDFKLVLELSRSIILKSTASILTITDDSEWCSLLLCLYKLYCLVIRPHFGYISGQRELEENFSQDPTQISLTQSNEMIKFLVSLLTNVKSYTPMPGSHIGQLIFDSFIRAIIPLSTKAFDFIYPTVSTSSEDEFGGGIIPNCPIFSSNVSPEQNIKALVSFIHFVDIDDEFKFKQIWEMLEPIFVSPLGDAEMGSDEITEECKCLSLSGMATMIIKVCFEVTGVNSQVNLLETSTIPKSTYNHIPREKDLMFLNTPTGKKLNHLLSTIYGDMPQSELPLGGAIESVSSSSSMFGESSGNHQNMSSSSLSAYHFNIERSFSSNQFGSDQISLSDLRLFKTPYFIGVNFTPIIQKLLESFESFLVNPMCPPMLKKDILKSTVLLSDLFNREQVIWMFKTFTTIYAQDEIDDFLLKQHLILGICKGIAILQTPPNVGDSNAHSVGIFEMLKSALDHQNISLQVSALDGILYLLEGKVNKYIQGSLLQFLFRWIPTRLSSVPFPPVSLTLRVLATMFLMIEQYSREAEETLFTKRAVTTCIQLGQQQSTPVPIVYGVFRGLDRLLVSFSLSHSQRELISHFSLKSLPSENPIRSLLALGLMVTCIYTGDETGINSPSFTKSSISSIGSGGVNSLTAFEGSFSSSSIESPLNSALDSVMSSFIMDDNYSGSGGNSLINGGGGGDPLSSLDRQKFSRVNNMEKVKMLFDKIRLVSHFSYESHVLSEVLPVVIVDLFPSVDQVLSFILGEFLKQSKTNSKLMCQIISKVFDFLVENDTSENTNQHLINYWIIICLQNFFQIQNPTHCLWALTYLFLTSSPKRSFKLLESEFASKIQTNEKLFIIIASEFYFNKELSKENKQLFKDSFSKLKIEPYISLLKVINTTQ", "sequence_length": 3095, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b575a63c5bdf76fcf47f6cc69dc82a8ef4c66d12837935a924e8a234b2694a47", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q76P24.json", "taxon_id": "44689", "uniprot_accession": "Q76P24", "uniprot_release": "2026_03" } ], "pfam_id": "PF12372", "short_name": "Htt_N-HEAT", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12375", "short_name": "DUF3653", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Encephalitozoon cuniculi (strain GB-M1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1609-pf07753.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07753", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1609-pf07753.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3654-pf12376.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3654-pf12376.yaml" } ], "pfam_ids": [ "PF07753", "PF12376" ], "protein_name": "UPF0329 protein ECU05_1680/ECU11_0050", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRIYAAWTLVAAAGVMDCSPRLEKAAAFTLGPDSQVIVFPFMFQGYNIVVLPTTKYGDLKGNARRRVASFLEHNISHAVWYFVVGGIAYKDDRSERLFSEMMDGYLKKISAGASKVYKGGRKMFSESLETVHEMIFECNKAGDGHVVKYGKSIINRLSDMIENAPTGISAEEKREYRRFWSRVKERAGFLYSTERLRRVVEVEKIVCNACKEICLKLKEEELMGLLAEGKMKKDLKATVDEDEIGHCLYLEYTVVNTSLLLDAHREHGGDVTRELVKQMLLGKKGDEIDRRYINKVANVVKERQRREMEKKEEEKKKEEEKKKEEEKRKEEKKKKKEEKKEEKKKKKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKSGKSLREGEASEEAEMPSVEVGGARRKTGKKSEGGRKRYKIHRRVSRWRKSPEKIKEEWDKGSEEKWRGRSLEEIKEQKVFHDIMGVLELLRSEDADKFFIDTGDYTKGGSERQRMVAIGVLESGGKRMAGVVEVGTFKDSSSGCPVVYHLMFRVTGIEGMGDVMSPEFAEANDIEKIDKNREYQDEGMFVYPRGVRFETVKETDAFQIVWGNPSNTSKVLRRLTIQRRPYVI", "sequence_length": 612, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bfe588e59a889ab0fbbf87f7d466c2e8fe864a54d64b59fc3f03a29abceacfa7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8STA9.json", "taxon_id": "284813", "uniprot_accession": "Q8STA9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Encephalitozoon cuniculi (strain GB-M1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1609-pf07753.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07753", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1609-pf07753.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3654-pf12376.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3654-pf12376.yaml" } ], "pfam_ids": [ "PF07753", "PF12376" ], "protein_name": "UPF0329 protein ECU06_1680", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRMLDDMIENPPAGMSEEEKKVYLEDWRSAKEWGGFLYSIERWERIAEVEKIVCNACKEICLGLREEELLGLLAEGGMKKTLKEEFSEDKAKDARYLEYIVVDDVLLLDAHREYGGEVTKELVRQMLLGKEGKDIDKRYVDRVAGVVRERQRKREEETERSVKELVGDEEKAKSKEEKAKSKEEKAKSKRGRKGKSASAPSEQEEEKKESEVEEAEQGGEVEALPVEVGGARSKGGKKKSKGGRKCFKIHRRVLRWTKSPEKIKEEWDKGSEERWKGRSLEEIKEQKIVHDITGVLELLRSEDADRFFMDAGKYRKGGSERQRMVAIGALETGGQRMTGVVEVGTFKDGDGCPVVYHLRFKPTSIGSIGDVINPGVVEASDVGRVDEGEECEDADKFVYPKGVRFETVKETGSFQIVWKNPSDTSEVLRRLIVYCRPCVI", "sequence_length": 440, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9e6e75307b386fd8ea9a9ad612f01ce896b595b97866a347a8e73b4b718309bc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8SV57.json", "taxon_id": "284813", "uniprot_accession": "Q8SV57", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Encephalitozoon cuniculi (strain GB-M1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf1609-pf07753.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07753", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf1609-pf07753.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3654-pf12376.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3654-pf12376.yaml" } ], "pfam_ids": [ "PF07753", "PF12376" ], "protein_name": "UPF0329 protein ECU03_0090", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRMWLVSAIALVDILCTSKIEELVENMGKKIEEALPHEFDSAEKEALKKHLKETAGLGTRLMVPCIFHEDRVVASPTTRYQDIDEEEKGYVEKVIALLPRLLWRSVAYIYVFGNDSWVVNLMEEVFETAPFKKSDAVALYKRARGRLGIRLIDLVNRTFRHNIGMLNRFGQRLAQEAEAKIQEISSSLSDEEKRKEEKMLQIIKEYGESLCTKEKQEEIIRAQEIMCDACACIWERDSNRESFVMETYSRHLYLRMIGSSMDVEEPLLSYIDHRGLIDAYEKYKSIDIVAELIKQVFTERGCISDESVNDAVCGVREREEAEKMRGEEERRKKEEESLRNTLELLRMEEKEKSKSRGKKKKGGKKGSGEVTAKMEEEKKDSEEVEESAEAEVSLEEMAVGGARSKERSSKKKSRSKGHRYKVHKRVLRWTKSAERIKAELDEGSEEKWRNKSIEEIEEQKKVHDIIEVCVLLRSLDANRFFVSTNRYMKDGTERWKMVGVGIFEEGGEKKVGKVEVGLYRDKGEGSVIYHLMFKAMDTEKAGKGARSSFGKGDDVEGLEEGAGELSDMSGFEYPKGVRSEIVKGGDAFKIVYRNPKDTSEVLRSLTVLQKAEVL", "sequence_length": 614, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6fec0e77568a65fe0f7c00e782e5a111bdaf946b518fb3eef6b488c885a5c0e1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8SW78.json", "taxon_id": "284813", "uniprot_accession": "Q8SW78", "uniprot_release": "2026_03" } ], "pfam_id": "PF12376", "short_name": "DUF3654", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus 279/2005", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-nab-pf16251.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-nab-pf16251.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-sud-c-pf12124.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12124", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-sud-c-pf12124.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-sud-m-pf11633.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11633", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-sud-m-pf11633.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp1-pf11501.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11501", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp1-pf11501.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp2-n-pf19211.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19211", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp2-n-pf19211.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF16251", "PF16348", "PF19211", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLALGVSEKTHVQLSLPVLQVRDVLVRGFGDSVEEALAEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDAQGTNHGYKVVELVAELDGIQYGRSGTTLGVLVPHVGETPVAYRNVLLRKNGNKGAGGHSYGIDLKSYDLGVELGTDPIEDYEQNWNTKHGGGVLRELIRELNGGAFTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVWFTERSEKSYERQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYLPANAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFAYVGCYNKRAYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASFSASTCAFVDTVKGLDYKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSILTPLYGFPSQAAGVIRSIFTRALDTANHSIPDLQRAAITILDGISEQSLRLIDAMVYTSDLLTNSVIVMAYVTGGLVQQITQWLSNMLGTTVDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLVTGVFDIVKGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGAKLRTLNLGEVFIAQSKGLYRQCIRGKEQLQLLMPLRAPKEVTFFEGDSHDTVFTSEEVVLKNGELEALETPVDSFTNGAVIGTPVCVNGLMLLELKDKEQYCALSPGLLATNNVFSLKGGAPVKGVTFGEDTVLEVQGYKNVKITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYEDEEEIPEETCEHEYGTEDDYKGLPLEFGASTEIQQVDEEEEEDWLEEAIAAKPEPEPLPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKATNGAMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYANFNSQDVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYFAVNDQDLYDHVVLGYLDSLKPKVETPTQENLELKEQPAVETLTQENLELEELPVIEKPVDVKFKARIEEVNTSLEETKFLTSRLLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVGDVISSGDITCVIIPAKKAGGTTEMLAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRKCKSVFYVLPSKTPNDKEEILGTVSWNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFLKRGDKVVYHTVGSPIQFHLDGEVLLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPHAKHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRETMTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICGRDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRIDGAYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEVEDTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQAAVTTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAAFGVLLSNLGIPSYCDGVRESYVNSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNAITTKISLKGGKIVSTWFKLMLKATLLCVLAALFCYIIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIMATDDCFANKHAGFDSWFSQRGGSYRNDKSCPVVAAIITREIGFIVPGLPGTVLRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEAGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFSTFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLVLMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSQNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVCTVCGTWKGYGCSCDQLREPMMQSADASTFLNGFAV", "sequence_length": 4388, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "543bb4029c40f29d491ea1214c9b83bc69194870a2ded28883fc31669216a216", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6F5.json", "taxon_id": "389167", "uniprot_accession": "P0C6F5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus HKU3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-sud-c-pf12124.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12124", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-sud-c-pf12124.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp4-c-pf16348.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16348", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp4-c-pf16348.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp7-pf08716.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08716", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp7-pf08716.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp8-pf08717.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp8-pf08717.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp9-pf08710.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp9-pf08710.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12379", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp10-pf09401.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp10-pf09401.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp3-c-pf19218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp3-c-pf19218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp4-n-pf19217.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp4-n-pf19217.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp6-pf19213.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp6-pf19213.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-peptidase-pf08715.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-peptidase-pf08715.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF16251", "PF16348", "PF19211", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRNVLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGGVVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVWFTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYLPTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKRAYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASFSASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQAAGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAYVTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIKGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQCIRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVGTPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGSYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLNGFAV", "sequence_length": 4376, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e245bec24665357a98a81fcc72dd64fd1371d28a010baa58cfb6afb6d2c1797b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6F8.json", "taxon_id": "442736", "uniprot_accession": "P0C6F8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Severe acute respiratory syndrome coronavirus", "origins": [ { "cited_uniprot_accession": "P0C6U8", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/hexachlorophene.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:5693", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/hexachlorophene.yaml" }, { "cited_uniprot_accession": "P0C6U8", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antifungal/bithionol.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:3131", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antifungal/bithionol.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF16251", "PF16348", "PF19211", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRNVLLRKNGNKGAGGHSYGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGGAVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIAWFTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGYLPTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKRAYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILASFSASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQAAGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMAYVTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDIVKGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQCIRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAIVGTPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGGAPIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKIVSTCFKLMLKATLLCVLAALVCYIVMPVHTLSIHDGYTNEIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQRGGSYKNDKSCPVVAAIITREIGFIVPGLPGTVLRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVLNNEHYRALSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFSTFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNALDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINRLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPLMQSADASTFLNGFAV", "sequence_length": 4382, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d710bcffd7faf91019592cf236162bcd7d2c892820a6b5c0a91632cc3d51225c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6U8.json", "taxon_id": "694009", "uniprot_accession": "P0C6U8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus 279/2005", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-sud-c-pf12124.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12124", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-sud-c-pf12124.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-sud-m-pf11633.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11633", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-sud-m-pf11633.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp1-pf11501.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11501", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp1-pf11501.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF13087", "PF16251", "PF16348", "PF19211", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLALGVSEKTHVQLSLPVLQVRDVLVRGFGDSVEEALAEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDAQGTNHGYKVVELVAELDGIQYGRSGTTLGVLVPHVGETPVAYRNVLLRKNGNKGAGGHSYGIDLKSYDLGVELGTDPIEDYEQNWNTKHGGGVLRELIRELNGGAFTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVWFTERSEKSYERQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYLPANAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFAYVGCYNKRAYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASFSASTCAFVDTVKGLDYKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSILTPLYGFPSQAAGVIRSIFTRALDTANHSIPDLQRAAITILDGISEQSLRLIDAMVYTSDLLTNSVIVMAYVTGGLVQQITQWLSNMLGTTVDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLVTGVFDIVKGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGAKLRTLNLGEVFIAQSKGLYRQCIRGKEQLQLLMPLRAPKEVTFFEGDSHDTVFTSEEVVLKNGELEALETPVDSFTNGAVIGTPVCVNGLMLLELKDKEQYCALSPGLLATNNVFSLKGGAPVKGVTFGEDTVLEVQGYKNVKITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYEDEEEIPEETCEHEYGTEDDYKGLPLEFGASTEIQQVDEEEEEDWLEEAIAAKPEPEPLPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKATNGAMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYANFNSQDVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYFAVNDQDLYDHVVLGYLDSLKPKVETPTQENLELKEQPAVETLTQENLELEELPVIEKPVDVKFKARIEEVNTSLEETKFLTSRLLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVGDVISSGDITCVIIPAKKAGGTTEMLAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRKCKSVFYVLPSKTPNDKEEILGTVSWNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFLKRGDKVVYHTVGSPIQFHLDGEVLLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPHAKHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRETMTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICGRDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRIDGAYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEVEDTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQAAVTTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAAFGVLLSNLGIPSYCDGVRESYVNSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNAITTKISLKGGKIVSTWFKLMLKATLLCVLAALFCYIIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIMATDDCFANKHAGFDSWFSQRGGSYRNDKSCPVVAAIITREIGFIVPGLPGTVLRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEAGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFSTFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLVLMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSQNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVCTVCGTWKGYGCSCDQLREPMMQSADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNERVAGFAKFLKTNCCRFQEKDEEGNLLDSYFVVKRHTMSNYQHEETIYNLVKECPAVAVHDFFKFRVDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILTLTKALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDVLFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFKAVHYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQAVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKLHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKEKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEVPRRNVATLQAENVTGLFKDCSKIITGLHPTQAPTHLSVDTKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATRDAVGTNLPLQLGFSTGVNLVAVPTGYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVVFVLWAHGFELTSMKYFVKIGPERTCCLCDRRATCFSTSSDTYACWNHSVGFDYVYNPFMIDVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIGDELKINAACRKVQHMVVKSALLADKFSVLHDIGNPKAIKCVPQAEVDWKFYDAQPCSDKAYKIEELFYSYATHHDKFTDGVCLFWNCNVDRYPANAIVCRFDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFTYLKQLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRRHANEYRQYLDAYNMMISAGFSLWIYKQFDTYNLWNTFTRLQSLENVAYNVVNKGHFDGQIGEAPVSIINNAVYTKVDGNDVEIFENKTTLPVNVAFELWAKRNIKPVPEIKILNNLGVDIAANTVIWDYKREAPAHVSTIGVCTMTDIAKKPTESACSSLTVLFDGRVEGQVDLFRNARNGVLITEGSVKGLTPSKGPAQASVNGVTLIGESVKTQFNYFKKVDGIIQQLPETYFTQSRDLEDFKPRSKMETDFLELAMDEFIQRYKLEGYAFEHIVYGDFSHGQLGGLHLMIGLAKRSQDSPLKLEDFIPTDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIKSQDLSVISKVVKVTIDYAEISFMLWCKDGHVETFYPKLQASQAWQPGVAMPNLYKMQRMLLEKCDLQNYGENAVIPKGIMMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGALLVDSDLNDFVSDADSTLIGDCATVHTANKWDLIISDMYDPKTKHVTKENDSKEGFFTYLCGFIKQKLALGGSVAVKITEHSWNADLYKLMGHFSWWTAFVTNVNASSSEAFLIGVNYLGKLREQIDGYTMHANYIFWRNTNPIQLSSYSLFDMSKFPLKLRGTAVMSLKENQINDMIYSLLENGRLIIRENNRVVVSSDILVNN", "sequence_length": 7079, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f861a9431459f19e16b58422ba9f30064821d886f9e79069f0d8ae564804314e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6V9.json", "taxon_id": "389167", "uniprot_accession": "P0C6V9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Severe acute respiratory syndrome coronavirus 2", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12379", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF16251", "PF16348", "PF19211", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV", "sequence_length": 4405, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bb8d4ddedb5cd0daf2e688e644633a2c5376e718cb62935cb3380dcf38173bf8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DTC1.json", "taxon_id": "2697049", "uniprot_accession": "P0DTC1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Severe acute respiratory syndrome coronavirus 2", "origins": [ { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/3-6-diaminoacridine.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:8452", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/3-6-diaminoacridine.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/anacardic-acid.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:2696", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/anacardic-acid.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/baicalein.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:2979", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/baicalein.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/ebselen.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:77543", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/ebselen.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/hexachlorophene.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:5693", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/hexachlorophene.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antifungal/disulfiram.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:4659", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antifungal/disulfiram.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antiviral/n-4-1h-benzotriazol-1-yl-acetyl-thiophen-3-yl-methyl-amino-phenyl-prop.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:149680", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antiviral/n-4-1h-benzotriazol-1-yl-acetyl-thiophen-3-yl-methyl-amino-phenyl-prop.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12379", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF13087", "PF16251", "PF16348", "PF19211", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQAVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATLQAENVTGLFKDCSKVITGLHPTQAPTHLSVDTKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATREAVGTNLPLQLGFSTGVNLVAVPTGYVDTPNNTDFSRVSAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGFELTSMKYFVKIGPERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMIDVQQWGFTGNLQSNHDLYCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWTIEYPIIGDELKINAACRKVQHMVVKAALLADKFPVLHDIGNPKAIKCVPQADVEWKFYDAQPCSDKAYKIEELFYSYATHSDKFTDGVCLFWNCNVDRYPANSIVCRFDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFVNLKQLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRHHANEYRLYLDAYNMMISAGFSLWVYKQFDTYNLWNTFTRLQSLENVAFNVVNKGHFDGQQGEVPVSIINNTVYTKVDGVDVELFENKTTLPVNVAFELWAKRNIKPVPEVKILNNLGVDIAANTVIWDYKRDAPAHISTIGVCSMTDIAKKPTETICAPLTVFFDGRVDGQVDLFRNARNGVLITEGSVKGLQPSVGPKQASLNGVTLIGEAVKTQFNYYKKVDGVVQQLPETYFTQSRNLQEFKPRSQMEIDFLELAMDEFIERYKLEGYAFEHIVYGDFSHSQLGGLHLLIGLAKRFKESPFELEDFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIKSQDLSVVSKVVKVTIDYTEISFMLWCKDGHVETFYPKLQSSQAWQPGVAMPNLYKMQRMLLEKCDLQNYGDSATLPKGIMMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTANKWDLIISDMYDPKTKNVTKENDSKEGFFTYICGFIQQKLALGGSVAIKITEHSWNADLYKLMGHFAWWTAFVTNVNASSSEAFLIGCNYLGKPREQIDGYVMHANYIFWRNTNPIQLSSYSLFDMSKFPLKLRGTAVMSLKEGQINDMILSLLSKGRLIIRENNRVVISSDVLVNN", "sequence_length": 7096, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "edbd5d8a5deb16bfd31ff3029c7897b816b752cb26cd0dcf23d089dcdd841586", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DTD1.json", "taxon_id": "2697049", "uniprot_accession": "P0DTD1", "uniprot_release": "2026_03" } ], "pfam_id": "PF12379", "short_name": "bCoV_NSP3_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/peptidase-family-u32-n-terminal-domain-ipr060007.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR060007", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/peptidase-family-u32-n-terminal-domain-ipr060007.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/peptidase-u32-collagenase-ipr020988.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR020988", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/peptidase-u32-collagenase-ipr020988.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/peptidase-u32-pf01136.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01136", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/peptidase-u32-pf01136.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3656-pf12392.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12392", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3656-pf12392.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/peptidase-u32.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01276", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/peptidase-u32.yaml" } ], "pfam_ids": [ "PF01136", "PF12392" ], "protein_name": "23S rRNA 5-hydroxycytidine C2501 synthase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHRYGAKIFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCDIRTVEKAKFLSDVGFTQIVLARELNLDQIRAIHQATDATIEFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFKIEGRYKDMSYVKNITAHYRQMLDAIIEERGDLARASSGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLPVGEVVKVAKDHLDVAVTEPLANGDGLNVLIKREVVGFRANTVEKTGENQYRVWPNEMPADLHKIRPHHPLNRNLDHNWQQALTKTSSERRVAVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNAEKAMNNLKDGLAKLGQTLYYARDVQINLPGALFVPNSLLNQFRREAADMLDAARLASYQRGSRKPVADPAPVYPQTHLSFLANVYNQKAREFYHRYGVQLIDAAYEAHEEKGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKNHILKMPLPGSVVASVSPDELLKTLPKRKG", "sequence_length": 653, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ae18472bcff866009f8821b4e8f461d5b961a1b85b7fd55f9b23f880424c006d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76104.json", "taxon_id": "83333", "uniprot_accession": "P76104", "uniprot_release": "2026_03" } ], "pfam_id": "PF12392", "short_name": "DUF3656", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3657-pf12394.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12394", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3657-pf12394.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf676-pf05057.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf676-pf05057.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q49AJ0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF05057", "PF12394" ], "protein_name": "Protein FAM135B", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "cc227836af107648bc58a51a859772a3bea5a1f6c12ae3b659bfe34a0af9d452", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSEIQGTVEFSVELHKFYNVDLFQRGYYQIRVTLKVSSRIPHRLSASIAGQTESSSLHSACVHDSTVHSRVFQILYRNEEVPINDAVVFRVHLLLGGERMEDALSEVDFQLKVDLHFTDSEQQLRDVAGAPMVSSRTLGLHFHPRNGLHHQVPVMFDYFHLSVISVTVHAALVALQQPLISFTRPGRGSWLGKGGPDTGQEQSIISLENLVFGAGYCKPTSSEGSFYITSENCMQHAHKWHRDLCLLLLHAYRGLRLHFLVIMRDIPELPHTELEALAVEETLSQLCSELQMLNNPEKIAEQISKDLAWLTSHMMTLWTQFLDTVTLHSQVTTYLTQEHHTLRVRRFSEAFFYMEHQKLAVLTFQENLIQTHSQLSLDIRNSEYLTSMPPLPAECLDIDGDWNTLPVIFEDRYVDCPATGHNLSVYPNFDVPVTSPTIMNLKDKEDNCMVNSNLSFREDLVLSTIKPSQMDSDEEVIRCPEPGENVATQNHMDMCSESQVYISIGEFQNKAGVPEDECWTGQTSDAGTYPVADVDTSRRSPGPEDGQAPVLTYIDVKSSNKNPSRAEPLVAFNAQHESRSSRDKYGLDRTGLSKVVVGGSHQNAISSDKTTLHELSTLGKGIDQEGKMVLLSLKLTPSEPCDPLSSTLREPLDIRSSLKDSHTEEQEELSVLSGVIKRSSSIISDSGIESEPSSVAWSEARSRALELPSDREVLHPFVRRHALHRNSLEGGHTESNTSLPSGIQASLTSISSLPFEEDEREVALTKLTKSVSAPHISSPEEAAEDADTKQQDGGFAEPSDMHSKSQGSPGSCSQLCGDSGTDAGADHPLVEIVLDADNQQGPGYIDIPKGKGKQFDAQGHCLPDGRTENTPGVETKGLNLKIPRVIALENPRTRSLHRALEETPKGMPKDLNVGQQALSNSGISEVEGLSQHQVPELSCTSAADAINRNSTGQQSQSGSPCIMDDTAFNRGVNAFPEAKHKAGTVCPTVTHSVHSQVLKNQELKAGTSIMGSHLTSAETFTLDSLKAVEVVNLSVSCTATCLPFSSVPKETPARAGFSSKQTLFPITHQPLGSFGVVSTHSSTLDEEVSERMFSFYQAKEKFKKELKIEGFLYSDLTVLASDIPYFPPEEEEENLEDGIHLVVCVHGLDGNSADLRLVKTFIELGLPGGKLDFLMSEKNQMDTFADFDTMTDRLLDEIIQHIQLYNLSISRISFIGHSLGNIIIRSVLTRPRFRYYLNKLHTFLSLSGPHLGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKTGLQYFKNVVLVASPQDRYVPFHSARIEMCKTALKDRHTGPVYAEMINNLLGPLVEAKDCTLIRHNVFHALPNTANTLIGRAAHIAVLDSELFLEKFFLVAGLNYFK", "sequence_length": 1406, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "cc227836af107648bc58a51a859772a3bea5a1f6c12ae3b659bfe34a0af9d452", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q49AJ0.json", "taxon_id": "9606", "uniprot_accession": "Q49AJ0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml" } ], "pfam_ids": [ "PF05057", "PF12394" ], "protein_name": "Protein FAM135A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPARIPHRVEASLLHATGMTLAFPASVHDALVCSKTFQILYKNEEVVLNDVMIFKVKMLLDERKIEETLEEISFLLSLGLHFTDGDYSADDLNALQLISSRTLKLHYSICRGLHHHANVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKTTWLNRNAPAQSKDSAIPTLESVVFGINYTKQLSPDGCSFLIAESFLHHAYHFHYTLCATLLLAFKGLHSYFITVTEEIPSCQKLDLEEMDVEARLTELCEEVKKVENPDELAELINMNLAQLCSLLMALWGQFLEAITLHEDLRVLLAQEHHTLRVRRFSEAFFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVIEDLDAPWMGIQSLQISEASKTDKHETEESSVVGLSSPELKVRPAVASSNCYTEGEKQLTKSLKGKNEESNKSKVKVTKLMKTMKPENTKKLIKQNSKDSVVLVSYKCLKTTASSDFTKCLEGSPSHSQKEGLDPTLCAGNFDPKTYTRQPSQKEASSLSANTDRSEHKSPDTENMQPDQFELLNSGSLNLCANLSISGKLAISQDNSDIPDTEHNLASTSSSNDCHDYQTTPSSGVRTLEVKSSSKESFNGEKITVKIGPWTELQEAELFVDNLLPDFEALDSNDKPKSIDIPLERDALQETKCHSTEESLTKFRSNLPAPSTKEYHVAVSSDTIKLPDTNATYASSRFSDSGVESEPSSFATHPNPEIAFETLQGPGPCNNERLFPQLLMKPDHNVKFSLGSHCTESTSALSEIQSSLTSINSLPSDDELSPDDNCKKSAVPDCHLSDSKTVFNLGTMDLPKCDDTKKSSIILQQQSVVFSGHLDNDTLAMHSLDLSTEDPLRLVFLDEDASSGVRSSWGSKPHLDAPFTGPQSQGTSSNNSTESVPTLNSKLICLGSPCVVSGSVCTDAGLSADRTVEGKSGEPLNHKQVCSAAPVVESDPLSSSTDVVKQGLVENYFGSQSTTDVSDACAITCHSPVSSQETCDKGISDLQQEQGKEEEEEDQEMVQNGYHEETDFSATDGTVSVHYISGNELGEGRHEQSEKLSSNYLSAGVTVPAVCTSGCLSFPSALRESPCVKYSSRSKVDAITKQPSSISYNFSSSTSWYENSPKPQIHAFLQAKEELKQLRLPGFMYSDVPLLASSAPYFSMDEEDGSEDGVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRVDFLMSERNQNDTFADFDCMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFKYYLSKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKGCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ", "sequence_length": 1506, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "265a2fde1997256d819405cd6a4a4029985a04d63dd47dfb01a9645ed3b0af24", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NS59.json", "taxon_id": "10090", "uniprot_accession": "Q6NS59", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3657-pf12394.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12394", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3657-pf12394.yaml" } ], "pfam_ids": [ "PF05057", "PF12394" ], "protein_name": "Protein FAM135B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEVQGTVEFSVELHKFYNVDLFQRGYYQIRVTLKVSSRIPHRLSASIVGQSESSSLHSACVHESAVHSRVFQILYRNEEVSINDAMLFRVHLLLDGERVEDALSEVEFQLKVDLHFTDSEQQLRDVTGTPMISSRTLGLHFHPRRGLHHQVPVMFDYFHLSVISVAIHAALVALQQPLISFTRPGRGSWLGKGGPDTGPEQPTISLENLVFGAGYCKPTSSEGSFYVPSENCIQHAHKWHRDLCLLLLHAYQGLRLYFLVIMRDIPELPTMELEALAVEETLSQLCSELQMLNNPEKIAEQISKDLAWLASHLMALWTQFLDTVTLHSQVTTYLTQEHHTLRVRRFSEAFFYMEHQKLAVLTFQENLIQTHSQLSLDIRNSEYLTSMPPLPAECLDIDGDWNTLPVIFEDRYVDCPVSGHNLSVYPNFDVPVTSPAIMNLKGKEKNLINQNSSSRKDIPLSTTEAPQLGSDEDVTRRPEVQENVSTWNPIDVCSESQVYLTIGEFQNRAGIPEDECWTGPRPDAVKDSLTDTDICSRSPGPDEGQTPALTYIDVQSSNKYCPRAELVQGINVQHEHRSSRESYGIVKTVPSKVVAGTSQNNSTSLNQTAALELRTLGRGVNQDGKPVLLSLKLTPAEPCDPPSTALREALDTKPSQPDHAEEPEDLSALSGVIKRSASIISDSGIESEPSSVAWSEARSRALELPSDRDVLHQVVRRHAHHRNSLEGGHTESNTSLPSGIQASLSSISSLPFEEEERELALNKLTKSVSAPQISSPEESAEGADTIKNTAGFSEDLDPSSKENSPPRHTSLSYGGSRVQDVRAGHSLADIALDSDRPQGPGYMDIPNDKGNHPELQEPCCLDGMAETPLHVETKGLNLKIPCTIVLENSKSRSFHRAAGETAKGKPEELSMSKCVLSNNSISEVRAASHHRVPEISCSPAVEAVNLNSTGVQNSSLSVNDTMTLNRRHNASLEAKHEAGTVCPTVTHTIASQVSRNQELKTGTSISGSHLNSTEAFTLDSLKAVEVVNLSVSCTATCLPFSSVPKETPARAGLSSKQNPAPITHQPLGSFGVVSTYSSKLEEEVSERMFSFYQAKEKFKKELKIEGFLYSDLSVLASDIPYFPPEEEEENLEDGIHLVVCVHGLDGNSADLRLVKTFIELGLPGGKLDFLMSEKNQTDTFADFDTMTDRLLDEIIQHIQLYNLSISRISFIGHSLGNIIIRSVLTRPRFRYYLNKLHTFLSLSGPHLGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKTGLQYFKNVVLVASPQDRYVPFHSARIEMCKTALKDRHTGPVYAEMINNLLGPLVEAKDCTLIRHNVFHALPNTANTLIGRAAHIAVLDSELFLEKFFLVAGLNYFK", "sequence_length": 1403, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d4af05113dd15dd8a416233acaa026cff0df4709af5bc5c2c99468dfba2924d6", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DAI6.json", "taxon_id": "10090", "uniprot_accession": "Q9DAI6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf676-lipase-like-ipr007751.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3657-pf12394.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12394", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3657-pf12394.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf676-pf05057.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf676-pf05057.yaml" } ], "pfam_ids": [ "PF05057", "PF12394" ], "protein_name": "Protein FAM135A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPSRIPHRVEASLLHATGMTLAFPASVHDSLICSKTFQILYKNEEVVLNDVMIFKVKMLLDERKIEETLEEMNFLLSLDLHFTDGDYSADDLNALQLISSRTLKLHFSPHRGLHHHVNVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKTTWLNRNAPAQNKDSVIPTLESVVFGINYTKQLSPDGCSFIIADSFLHHAYRFHYTLCATLLLAFKGLHSYFITVTEEIPSCQKLELEEMDVEARLTELCEEVKKIENPDELAELINMNLAQLCSLLMALWGQFLEVITLHEELRILLAQEHHTLRVRRFSEAFFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVTEDLDAPWMGIQNLQRSESSKMDKYETEESSVAGLSSPELKVRPAGASSIWYTEGEKQLTKSLKGKNEESNKSKVKVTKLMKTMKSENTKKLIKQNSKDSVVLVGYKCLKSTASNDLIKCFEGNPSHSQKEGLDPTICGYNFDPKTYMRQTSQKEASCLPTNTERTEQKSPDIENVQPDQFDPLNSGNLNLCANLSISGKLDISQDDSEITQMEHNLASRRSSDDCHDHQTTPSLGVRTIEIKPSNKDPFSGENITVKLGPWTELRQEEILVDNLLPNFESLESNGKSKSIEITFEKEALQEAKCLSIGESLTKLRSNLPAPSTKEYHVVVSGDTIKLPDISATYASSRFSDSGVESEPSSFATHPNTDLVFETVQGQGPCNSERLFPQLLMKPDYNVKFSLGNHCTESTSAISEIQSSLTSINSLPSDDELSPDENSKKSVVPECHLNDSKTVLNLGTTDLPKCDDTKKSSITLQQQSVVFSGNLDNETVAIHSLNSSIKDPLQFVFSDEETSSDVKSSCSSKPNLDTMCKGFQSPDKSNNSTGTAITLNSKLICLGTPCVISGSISSNTDVSEDRTMKKNSDVLNLTQMYSEIPTVESETHLGTSDPFSASTDIVKQGLVENYFGSQSSTDISDTCAVSYSNALSPQKETSEKEISNLQQEQDKEDEEEEQDQQMVQNGYYEETDYSALDGTINAHYTSRDELMEERLTKSEKINSDYLRDGINMPTVCTSGCLSFPSAPRESPCNVKYSSKSKFDAITKQPSSTSYNFTSSISWYESSPKPQIQAFLQAKEELKLLKLPGFMYSEVPLLASSVPYFSVEEEDGSEDGVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRIDFLMSERNQNDTFADFDSMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFKYYLNKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKDCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ", "sequence_length": 1515, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bde7abce2076da8c80cb2a7340d55daa379a44846d422e96af02a4d77e2d09fc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9P2D6.json", "taxon_id": "9606", "uniprot_accession": "Q9P2D6", "uniprot_release": "2026_03" } ], "pfam_id": "PF12394", "short_name": "DUF3657", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12395", "short_name": "DUF3658", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Verticillium dahliae (strain VdLs.17 / ATCC MYA-4575 / FGSC 10137)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6987-pf22485.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22485", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6987-pf22485.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3659-pf12396.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12396", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3659-pf12396.yaml" } ], "pfam_ids": [ "PF12396", "PF22485" ], "protein_name": "Virulence-associated protein VDAG_07280", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADTTTKKAEDTKQSVGNVVTATGDIVGKDGGIVGKALPLDNASAGGSKKGIFGTLMGATKGVKGVVDTVDGTVQTVEKGLPLVGDLTKGLGLGNGGGGFGGLLGKKQEDRSAEDKAATTEQAKKELFDNSDKAADAAPIDLKDQEAVDNAKTEVETKSQPPQSEASESKDEATEATTEASTDDNETVKQSGKDLTDTVSGAVGGAKDAVESTASGAKDTVEDTTQKTTDTAEDTTTKATDAVEDTTSKATDAAEDTTSKATDAAEDTTSKAADAAEKTADDVQDTAEETAETAQSTVDDTSKDVPKDTDSAKGLDDTADDAFDTAEQTTSDAKDSADKTASDDKVEDTKAAAEGAKDTAEETAEDAKDAASEAPKGLSEQAQSQLDEMETVADVQVENPFQKFEGAQLDDEGKVIFDNQSIGKVVEGDPLELANKEIAPDGAILNDEGSEIGRVELKSEIAEDLQKQAEALAGLKDAKVNKAGNLVKNDAVIGRIVEGTIKNLIGRKADAQGRIWNDSGEQIGRAEPLADKEREEFKEPSPFEDFPDAVVQSNGDVTFEGEKIGVLVEGDPKKLKGKHIDEDGEVQDRQGNVIGRAERWEPEEEEPAPEVDNSLLAEKRVNKAGLVVDSNGTAFGRVVEGDVAKLINRMCNKKGEVLSESGEVIGRAELIPEHERHEKKDQPFENFPDAVVQANGDVTHNGEIVGRLIEGDAKKLQNSKVDADGDVVRDGNVIGKAERYTPEEPEPEPEQDKSILGGKRVNKAGFVVDSNGVPYGRVVEGDISRLVNRMCDKQGNVLSESGDKLGVAEVLPEGERELKKEGPFAELPGCTVAKDGTVVTPSGDIVGRLIEGDGKKLFGREVDDDGEILHQGNVIGRAERWEPEPEPEKEKGPFAGLKVNKQGDVYRDGELVARLTSGELSVCSGAEIDDDNDVINHKGTSVGHVTAIADIPEPEPEEPKESEEEKKAREEAEQDEKLAKNLASQVEQSLDKIRPICKMITDKIEKAERTPKDELDEEALVKEVKPLIEEGGNILSELNGTIRAMDPDGRIQRNAKHKSSTSEASPAEHHLADLLKELSGSVVTCVENAKKKIADMPHAKKHLNPLWALLTEPLGQILAAVGLLLAGVLNLVGRLLSGLGLGGIIDGLLGTLGLNRVLEGLGLSSITGALTGKNK", "sequence_length": 1175, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a73a9f70fd8106e92b42665bd793973559b73bda9595a9b20685f3657807c6b6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G2XBE2.json", "taxon_id": "498257", "uniprot_accession": "G2XBE2", "uniprot_release": "2026_03" } ], "pfam_id": "PF12396", "short_name": "DUF3659", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3660-pf12398.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3660-pf12398.yaml" } ], "pfam_ids": [ "PF00954", "PF01453", "PF07714", "PF08276", "PF11883", "PF12398" ], "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SRK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRGELPNKHHSYTFFVFLFFFLILFPDLSISVNTLSATESLTISSNKTIVSPGGVFELGFFRILGDSWYLGIWYKKISQRTYVWVANRDTPLSNPIGILKISNANLVILDNSDTHVWSTNLTGAVRSSVVAELLDNGNFVLRGSKINESDEFLWQSFDFPTDTLLPQMKLGRDHKRGLNRFVTSWKSSFDPSSGSFMFKLETLGLPEFFGFTSFLEVYRSGPWDGLRFSGILEMQQWDDIIYNFTENREEVAYTFRVTDHNSYSRLTINTVGRLEGFMWEPTQQEWNMFWFMPKDTCDLYGICGPYAYCDMSTSPTCNCIKGFQPLSPQDWASGDVTGRCRRKTQLTCGEDRFFRLMNMKIPATTAAIVDKRIGLKECEEKCKTHCNCTAYANSDIRNGGSGCIIWIGEFRDIRNYAADGQDLFVRLAAAEFGERRTIRGKIIGLIIGISLMLVLSFIIYCFWKKKQKRARATAAPIGYRDRIQELIITNGVVMSSGRRLLGEEEDLELPLTEFETVVMATENFSDSNILGRGGFGIVYKGRLLDGQEIAVKRLSEMSSQGTNEFKNEVRLIARLQHINLVRLLSCCIYADEKILIYEYLENGSLDSHLFETTQSSNKLNWQTRFSIINGIARGLLYLHQDSRFKIIHRDLKASNVLLDKNMTPKISDFGMARIFERDETEANTRKVVGTYGYMSPEYAMEGIFSVKSDVFSFGVLVLEIVSGKRNRGFHNSGQDNNLLGYTWENWKEGKGLEIVDSIIVDSSSSMSLFQPHEVLRCIQIGLLCVQERAEDRPKMSSVVLMLGSEKGEIPQPKRPGYCVGRSSLDTADSSSSTKRDSESLTVNQITVSVINAR", "sequence_length": 853, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "49819b7dede907ee93894d381addbc50bb3835131bb67ee48ee264ab5541110d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DH86.json", "taxon_id": "3702", "uniprot_accession": "P0DH86", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3660-pf12398.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3660-pf12398.yaml" } ], "pfam_ids": [ "PF00954", "PF01453", "PF07714", "PF08276", "PF11883", "PF12398" ], "protein_name": "Receptor-like serine/threonine-protein kinase SD1-7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSVPNYHHSFFIFLILILFLAFSVSPNTLSATESLTISSNKTIISPSQIFELGFFNPASSSRWYLGIWYKIIPIRTYVWVANRDNPLSSSNGTLKISGNNLVIFDQSDRPVWSTNITGGDVRSPVAAELLDNGNFLLRDSNNRLLWQSFDFPTDTLLAEMKLGWDQKTGFNRILRSWKTTDDPSSGEFSTKLETSEFPEFYICSKESILYRSGPWNGMRFSSVPGTIQVDYMVYNFTASKEEVTYSYRINKTNLYSRLYLNSAGLLQRLTWFETTQSWKQLWYSPKDLCDNYKVCGNFGYCDSNSLPNCYCIKGFKPVNEQAWDLRDGSAGCMRKTRLSCDGRDGFTRLKRMKLPDTTATIVDREIGLKVCKERCLEDCNCTAFANADIRNGGSGCVIWTREILDMRNYAKGGQDLYVRLAAAELEDKRIKNEKIIGSSIGVSILLLLSFVIFHFWKRKQKRSITIQTPNVDQVRSQDSLINDVVVSRRGYTSKEKKSEYLELPLLELEALATATNNFSNDNKLGQGGFGIVYKGRLLDGKEIAVKRLSKMSSQGTDEFMNEVRLIAKLQHINLVRLLGCCVDKGEKMLIYEYLENLSLDSHLFDQTRSSNLNWQKRFDIINGIARGLLYLHQDSRCRIIHRDLKASNVLLDKNMTPKISDFGMARIFGREETEANTRRVVGTYGYMSPEYAMDGIFSMKSDVFSFGVLLLEIISGKRNKGFYNSNRDLNLLGFVWRHWKEGNELEIVDPINIDSLSSKFPTHEILRCIQIGLLCVQERAEDRPVMSSVMVMLGSETTAIPQPKRPGFCIGRSPLEADSSSSTQRDDECTVNQITLSVIDAR", "sequence_length": 843, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b72cf8cd9cbdf39e381a9825bfd95b10df6de4cd1b676657c1ebd54f8fa302d4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q39086.json", "taxon_id": "3702", "uniprot_accession": "Q39086", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3403-pf11883.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3403-pf11883.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3660-pf12398.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3660-pf12398.yaml" } ], "pfam_ids": [ "PF00954", "PF01453", "PF07714", "PF08276", "PF11883", "PF12398" ], "protein_name": "Receptor-like serine/threonine-protein kinase SD1-6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNVPNYHHSYFILFIIILFLAFSVYASNFSATESLTISSNKTIISPSQIFELGFFNPDSSSRWYLGIWYKIIPIRTYVWVANRDNPLSSSNGTLKISDNNLVIFDQSDRPVWSTNITGGDVRSPVAAELLDYGNFVLRDSKNNKPSGFLWQSFDFPTDTLLSDMKMGWDNKSGGFNRILRSWKTTDDPSSGDFSTKLRTSGFPEFYIYNKESITYRSGPWLGNRFSSVPGMKPVDYIDNSFTENNQQVVYSYRVNKTNIYSILSLSSTGLLQRLTWMEAAQSWKQLWYSPKDLCDNYKECGNYGYCDANTSPICNCIKGFEPMNEQAALRDDSVGCVRKTKLSCDGRDGFVRLKKMRLPDTTETSVDKGIGLKECEERCLKGCNCTAFANTDIRNGGSGCVIWSGGLFDIRNYAKGGQDLYVRVAAGDLEDKRIKSKKIIGSSIGVSILLLLSFIIFHFWKRKQKRSITIQTPIVDLVRSQDSLMNELVKASRSYTSKENKTDYLELPLMEWKALAMATNNFSTDNKLGQGGFGIVYKGMLLDGKEIAVKRLSKMSSQGTDEFMNEVRLIAKLQHINLVRLLGCCVDKGEKMLIYEYLENLSLDSHLFDQTRSSNLNWQKRFDIINGIARGLLYLHQDSRCRIIHRDLKASNVLLDKNMTPKISDFGMARIFGREETEANTRRVVGTYGYMSPEYAMDGIFSMKSDVFSFGVLLLEIISGKRNKGFYNSNRDLNLLGFVWRHWKEGKELEIVDPINIDALSSEFPTHEILRCIQIGLLCVQERAEDRPVMSSVMVMLGSETTAIPQPKRPGFCVGRSSLEVDSSSSTQRDDECTVNQVTLSVIDAR", "sequence_length": 847, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "96b5d60e7cb00ae3ab89c3d0d0495fc62d505c5805d9d17388d07e472a63b3a4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9S972.json", "taxon_id": "3702", "uniprot_accession": "Q9S972", "uniprot_release": "2026_03" } ], "pfam_id": "PF12398", "short_name": "DUF3660", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/stimate-pf12400.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12400", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/stimate-pf12400.yaml" } ], "pfam_ids": [ "PF12400" ], "protein_name": "Vacuolar membrane protein YPL162C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYVSNGKDTCQLLGPVSLFVQTLMGMTAVIVLLVKRNYEHPRRKMIVWSYDIGKQIIGSLGIHFLNLGISILKKRRRSLFAITAKGNDDEDQCDWYFLNLLLDTTVGIPILWLCLYIIEKVLKSLHFQNIESGNYFPSKTVGSHPRKPLFSAFVKQLLIFIVGLGVMKFCVFLILNYLEDLAYWFADLILGWSDSWPNFQVFLVMFVFPILLNCFQYFCVDNVIRLHSESLTITNAENFETNTFLNDEIPDLSEVSNEVPNKDNNISSYGSII", "sequence_length": 273, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c85e332bb6c236adbbbf1c85fe8fee7818e4d1a53d0abda4c8eda3c6e31db8d0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12042.json", "taxon_id": "559292", "uniprot_accession": "Q12042", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/stimate-pf12400.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12400", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/stimate-pf12400.yaml" } ], "pfam_ids": [ "PF12400" ], "protein_name": "Store-operated calcium entry regulator STIMATE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQGPGGNVSRGLPSGPASTVASGAGRCESGALMHSFGIFLQGLLGVVAFSTLMLKRFREPKHERRPWRIWFLDTSKQAIGMLFIHFANVYLADLTEEDPCSLYLINFLLDATVGMLLIYVGVRAVGVLVEWQQWESLRFGEYGDPLQCGAWVGQCALYIVIMIFEKSVVFIVLLILQWKKVALLNPIENPDLKLAIVMLIVPFFVNAFMFWVVDNFLMRKGKTKAKLEERGANQDSRNGSKVRYRRAASHEESESEILISADDEMEESDAEEDLRRPVKKKHRFGLPV", "sequence_length": 288, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5cf8eaa5842070d7fe05d1ad79cb41156a7b5a5eaca36938cc8c853d69274cfc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UF25.json", "taxon_id": "10090", "uniprot_accession": "Q3UF25", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/stimate-pf12400.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12400", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/stimate-pf12400.yaml" } ], "pfam_ids": [ "PF12400" ], "protein_name": "Store-operated calcium entry regulator STIMATE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQGPAGNASRGLPGGPPSTVASGAGRCESGALMHSFGIFLQGLLGVVAFSTLMLKRFREPKHERRPWRIWFLDTSKQAIGMLFIHFANVYLADLTEEDPCSLYLINFLLDATVGMLLIYVGVRAVSVLVEWQQWESLRFGEYGDPLQCGAWVGQCALYIVIMIFEKSVVFIVLLILQWKKVALLNPIENPDLKLAIVMLIVPFFVNALMFWVVDNFLMRKGKTKAKLEERGANQDSRNGSKVRYRRAASHEESESEILISADDEMEESDVEEDLRRLTPLKPVKKKKHRFGLPV", "sequence_length": 294, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "92d2bf1e35bbdb05357bd239d5a7a4e8619b52e7b777b60bb57447c782713ee9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q86TL2.json", "taxon_id": "9606", "uniprot_accession": "Q86TL2", "uniprot_release": "2026_03" } ], "pfam_id": "PF12400", "short_name": "STIMATE", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fhaa-n-pf12401.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fhaa-n-pf12401.yaml" } ], "pfam_ids": [ "PF00498", "PF12401" ], "protein_name": "FHA domain-containing protein FhaA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSQKRLVQRVERKLEQTVGDAFARIFGGSIVPQEVEALLRREAADGIQSLQGNRLLAPNEYIITLGVHDFEKLGADPELKSTGFARDLADYIQEQGWQTYGDVVVRFEQSSNLHTGQFRARGTVNPDVETHPPVIDCARPQSNHAFGAEPGVAPMSDNSSYRGGQGQGRPDEYYDDRYARPQEDPRGGPDPQGGSDPRGGYPPETGGYPPQPGYPRPRHPDQGDYPEQIGYPDQGGYPEQRGYPEQRGYPDQRGYQDQGRGYPDQGQGGYPPPYEQRPPVSPGPAAGYGAPGYDQGYRQSGGYGPSPGGGQPGYGGYGEYGRGPARHEEGSYVPSGPPGPPEQRPAYPDQGGYDQGYQQGATTYGRQDYGGGADYTRYTESPRVPGYAPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGTSVTLQLDDGSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNAPVQEWQLADGDVIRLGHSEIIVRMH", "sequence_length": 527, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "133c01bfafe3aff23006e0917fb98bbacf0b1bb6575ff6ab0560eb911fa83cf4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P71590.json", "taxon_id": "83332", "uniprot_accession": "P71590", "uniprot_release": "2026_03" } ], "pfam_id": "PF12401", "short_name": "FhaA_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacter sp. (strain 638)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3663-pf12404.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12404", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3663-pf12404.yaml" } ], "pfam_ids": [ "PF00883", "PF12404" ], "protein_name": "Peptidase B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTEAMNITLSTQPADARWGEKATYSINNDGITLHLNGSDDLGLIQRAARKIDGLGIKHVTLAGEGWDTDRSWAFWAGYKGPKGTRKIEWANLDEAGQKELESRLMIIDWVRDTINAPAEELGPEQLAQRAVDLLCKAAGDKMSYRITKGEDLREQNYMGLHTVGRGSERPPVLLALDYNPTGDKQAPVYACLVGKGITFDTGGYSLKQSAFMDSMKSDMGGAATITGALAFAITRGLNKRVKLYLCCADNMVSGNAFKLGDIIRYRNGKNVEVMNTDAEGRLVLADGLIDASAQKPELIIDMATLTGAAKTALGNDYHALFTFDDKLASRLMASAAAENEPFWRLPLAEFHRSQLPSNFAELNNTASAAYPAGASTAAGFLSHFVENYHEGWLHIDCSATYRKAGVEQWSAGATGLGVRTIANLLTAE", "sequence_length": 428, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1915df5023e4e53331d9b866b7b117332ddcdac084612e99d0a1c19e99d56b97", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4WDA4.json", "taxon_id": "399742", "uniprot_accession": "A4WDA4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/aminopeptidase-pepb-nf003450.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF003450", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/aminopeptidase-pepb-nf003450.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/cytosol-aminopeptidase-family-n-terminal-and-catalytic-domains-family--cd00433.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd00433", "section": "canonical_examples", "url": 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"path": "data/traits/sequence/domain/interpro/peptidase-m17-peptidase-b-like-n-terminal-domain-ipr047620.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR047620", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/peptidase-m17-peptidase-b-like-n-terminal-domain-ipr047620.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3663-pf12404.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12404", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3663-pf12404.yaml" }, { 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"NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12408", "short_name": "DUF3666", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12412", "short_name": "DUF3667", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3668-pf12416.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12416", "section": "canonical_examples", "url": 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"ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3668-pf12416.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12416", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3668-pf12416.yaml" } ], "pfam_ids": [ "PF00168", "PF12416" ], "protein_name": "Centrosomal protein of 120 kDa", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"sequence_length": 986, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "490838d955f6c2ef1ea787e80dd74ffca7353316c208fa98522fee88b729f739", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N960.json", "taxon_id": "9606", "uniprot_accession": "Q8N960", "uniprot_release": "2026_03" } ], "pfam_id": "PF12416", "short_name": "DUF3668", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12417", "short_name": "DUF3669", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3670-pf12419.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12419", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3670-pf12419.yaml" } ], "pfam_ids": [ "PF00176", "PF00271", "PF12419" ], "protein_name": "Putative ATP-dependent helicase/translocase YwqA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLKEILIHVEQMEDGSFTLSAFDENEQPLPYSHMKKHLFQWHESSFYGTFLEDVSFIGTTAVLLSPWMTVELLGKNSFNSFSSVQLTEETEPLIEAASTIYEFIADGDFMPDYDAWTNGVFRWKDRDNILEGFTAEWFSAAVQDYIQYDDDLREKWEHIKEKSPAVTTFRGHFLDEEDFLEGIGWIDDQSPFTVGLRLNEPDFDGDEWKIEMFLRDKKSGAVEFFDGLKSLKKSWQAYSDKIAREQDRFHRTVPWLSFDSGTTLISEEEAWIFLSEASETLVDMGVEILLPSWWQIVRDSNMMLKAKVSSSPRGESFVGMNALLDFNWRFATNGIELTEAEFNELVASNRRLVNIRGQWVKIDPQFIKQMKRLMEKAESEGLHMSDILARELMDQQDGGLEDSDLIDTSAFAGIQFDLSKQLRSLIRKLTAAENLPEHKVSPSFKGTLRPYQKYGMNWLLFLRESGFGACLADDMGLGKTIQMIAYFLHVKESGRQKTPHLIIAPTSVLGNWQRELQTFAPDLSVALHYGPRRPKGDDFAAHYENADVVLTSYGLSHADTEELSSVTWNTICLDEAQNIKNAHTKQSRAIRKLKGLHHIALSGTPMENRLTELWSIFDFMNKGYLGSLTGFHKRYVLPIEKDRDEKRIGQLQQLIRPFLLRRTKRDEEVALNLPEKLEEKEFIPLSAEQASLYEQLVKDTFDHMTSLTGMQRKALILSMLGRLKQICDHPALYLKEEQTELLAGRSVKLEKLLELMTAIRAQNESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDTLVEKFQRKEYPTLILSLKAGGTGLNLTAANHVIHYDRWWNPAVENQATDRAYRIGQERFVHVHKMITTGTIEEKIDVMLESKQTLNDQIIQSENWITELSTQELEELFTLSATAQ", "sequence_length": 922, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "65936cb9a490c5a8f664fbc189e6cfd66dc60a2d29f44e19db506bc5f0805bf0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P94593.json", "taxon_id": "224308", "uniprot_accession": "P94593", "uniprot_release": "2026_03" } ], "pfam_id": "PF12419", "short_name": "DUF3670", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12420", "short_name": "DUF3671", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage lambda", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fniii-a-gpj-pf24801.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24801", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fniii-a-gpj-pf24801.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-gpj-c-pf12421.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12421", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-gpj-c-pf12421.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-j-pf24421.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24421", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-j-pf24421.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-j-second-pf24489.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24489", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-j-second-pf24489.yaml" } ], "pfam_ids": [ "PF09327", "PF12421", "PF13550", "PF24421", "PF24489", "PF24801" ], "protein_name": "Tip attachment protein J", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPIEGPVDGLKSVLLNSTPVLDTEGNTNISGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITRTITSANIDRLRFTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTTSQYLASVVMGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALVGVQVDSEQFGSQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTFKPAYSNNMAWCLWDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRKAWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKTWTYNRSNVVMPDDGAPFRYSFSALKDRHNAVEVNWIDPNNGWETATELVEDTQAIARYGRNVTKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLDREITLPSSGTALISLVDGSGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWELKLPTLRQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGEQSGTVNGVTPPAVQHLTAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVTADDGSERLVSTARTTETTYRFTQLALGNYRLTVRAVNAWGQQGDPASVSFRIAAPAAPSRIELTPGYFQITATPHLAVYDPTVQFEFWFSEKQIADIRQVETSTRYLGTALYWIAASINIKPGHDYYFYIRSVNTVGKSAFVEAVGRASDDAEGYLDFFKGKITESHLGKELLEKVELTEDNASRLEEFSKEWKDASDKWNAMWAVKIEQTKDGKHYVAGIGLSMEDTEEGKLSQFLVAANRIAFIDPANGNETPMFVAQGNQIFMNDVFLKRLTAPTITSGGNPPAFSLTPDGKLTAKNADISGSVNANSGTLSNVTIAENCTINGTLRAEKIVGDIVKAASAAFPRQRESSVDWPSGTRTVTVTDDHPFDRQIVVLPLTFRGSKRTVSGRTTYSMCYLKVLMNGAVIYDGAANEAVQVFSRIVDMPAGRGNVILTFTLTSTRHSADIPPYTFASDVQVMVIKKQALGISVV", "sequence_length": 1132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "08ac2d5fc2e1b7633310d801e26ffd4a0dc06e33b66ce7d0d967193eeb7dfe78", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P03749.json", "taxon_id": "2681611", "uniprot_accession": "P03749", "uniprot_release": "2026_03" } ], "pfam_id": "PF12421", "short_name": "Ig_GpJ_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12425", "short_name": "DUF3673", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hantaan virus (strain 76-118)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/capsnatcharena-pf21991.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21991", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/capsnatcharena-pf21991.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3674-pf12426.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12426", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3674-pf12426.yaml" } ], "pfam_ids": [ "PF04196", "PF12426", "PF21991" ], "protein_name": "RNA-directed RNA polymerase L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKYREIHNKLKEFSPGTLTAVECIDYLDRLYAVRHDIVDQMIKHDWSDNKDSEEAIGKVLLFAGVPSNIITALEKKIIPNHPTGKSLKAFFKMTPDNYKISGTTIEFVEVTVTADVDKGIREKKLKYEAGLTYIEQELHKFFLKGEIPQPYKITFNVVAVRTDGSNITTQWPSRRNDGVVQYMRLVQAEISYVREHLIKTEERAALEAMFNLKFNISTHKSQPYYIPDYKGMEPIGANIEDLVDYSKDWLSRARNFSFFEVKGTAVFECFNSNEANHCQRYPMSRKPRNFLLIQCSLITSYKPATTLSDQIDSRRACSYILNLIPDTPASYLIHDMAYRYINLTREDMINYYAPRIQFKQTQNVREPGTFKLTSSMLRAESKAMLDLLNNHKSGEKHGAQIESLNIASHIVQSESVSLITKILSDLELNITEPSTQEYSTTKHTYVDTVLDKFFQNETQKYLIDVLKKTTAWHIGHLIRDITESLIAHSGLKRSKYWSLHSYNNGNVILFILPSKSLEVAGSFIRFITVFRIGPGLVDKDNLDTILIDGDSQWGVSKVMSIDLNRLLALNIAFEKALIATATWFQYYTEDQGQFPLQYAIRSVFANHFLLAICQKMKLCAIFDNLRYLIPAVTSLYSGFPSLIEKLFERPFKSSLEVYIYYNIKSLLVALAQNNKARFYSKVKLLGLTVDQSTVGASGVYPSFMSRIVYKHYRSLISEVTTCFFLFEKGLHGNMNEEAKIHLETVEWALKFREKEEKYGESLVENGYMMWELRANAELAEQQLYCQDAIELAAIELNKVLATKSSVVANSILSKNWEEPYFSQTRNISLKGMSGQVQEDGHLSSSVTIIEAIRYLSNSRHNPSLLKLYEETREQKAMARIVRKYQRTEADRGFFITTLPTRCRLEIIEDYYDAIAKNISEEYISYGGEKKILAIQGALEKALRWASGESFIELSNHKFIRMKRKLMYVSADATKWSPGDNSAKFRRFTSMLHNGLPNNKLKNCVIDALKQVYKTDFFMSRKLRNYIDSMESLDPHIKQFLDFFPDGHHGEVKGNWLQGNLNKCSSLFGVAMSLLFKQVWTNLFPELDCFFEFAHHSDDALFIYGYLEPVDDGTDWFLFVSQQIQAGHLHWFSVNTEMWKSMFNLHEHILLLGSIKISPKKTTVSPTNAEFLSTFFEGCAVSIPFVKILLGSLSDLPGLGYFDDLAAAQSRCVKALDLGASPQVAQLAVALCTSKVERLYGTAPGMVNHPAAYLQVKHTDTPIPLGGNGAMSIMELATAGIGMSDKNLLKRALLGYSHKRQKSMLYILGLFKFLMKLSDETFQHERLGQFSFIGKVQWKIFTPKSEFEFADMYTSKFLELWSSQHVTYDYIIPKGRDNLLIYLVRKLNDPSIVTAMTMQSPLQLRFRMQAKQHMKVCRLDGEWVTFREVLAAANSFAENYSATSQDMDLFQTLTSCTFSKEYAWKDFLNGIHCDVIPTKQVQRAKVARTFTVREKDQIIQNSIPAVIGYKFAVTVEEMSDVLDTAKFPDSLSVDLKTMKDGVYRELGLDISLPDVMKRIAPMLYKSSKSRVVIVQGNVEGTAEAICRYWLKSMSLVKTIRVKPHKEVLQAVSIFNRKEDIGQQKDLAALKLCIEVWRWCKANSAPYRDWFQALWFEDKTFSEWLDRFCRVGVPPIDPEIQCAALMIADIKGDYSVLQLQANRRAYSGKQYDAYCVQTYNEVTKLYEGDLRVTFNFGLDCARLEIFWDKKAYILETSITQKHVLKIMMDEVSKELIKCGMRFNTEQVQGVRHMVLFKTESGFEWGKPNIPCIVYKNCVLRTSLRTTQAINHKFMITIKDDGLRAIAQHDEDSPRFLLAHAFHTIRDIRYQAVDAVSNVWFIHKGVKLYLNPIISSGLLENFMKNLPAAIPPAAYSLIMNRAKISVDLFMFNDLLKLINPRNTLDLSGLETTGDEFSTVSSMSSRLWSEEMSLVDDDEELDDEFTIDLQDVDFENIDIEADIEHFLQDESSYTGDLLISTEETESKKMRGIVKILEPVRLIKSWVSRGLSIEKVYSPVNIILMSRYISKTFNLSTKQVSLLDPYDLTELESIVRGWGECVIDQFESLDREAQNMVVNKGICPEDVIPDSLFSFRHTMVLLRRLFPQDSISSFY", "sequence_length": 2151, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "de1ac6bc08d24431dbaf4cc8b11fc52919bd5a073773b72d28c30709d94c0a62", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P23456.json", "taxon_id": "11602", "uniprot_accession": "P23456", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sin Nombre orthohantavirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/capsnatcharena-pf21991.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21991", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/capsnatcharena-pf21991.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3674-pf12426.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12426", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3674-pf12426.yaml" } ], "pfam_ids": [ "PF04196", "PF12426", "PF21991" ], "protein_name": "RNA-directed RNA polymerase L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKYREIHQRVKEIPPGGASALECLDLLDRLYAVRHDVVDQMIKHDWSDNKDMERPIGQVLLMAGVPNDVIQGMEKKVIPTSPSGQILKSFFRMTPDNYKITGALIEFIEVTVTADVAKGIREKKLKYESGLQFVESLLSQEHKKGNINQAYKITFDVVAVKTDGSNISTQWPSRRNDGVVQHMRLVQADINYVREHLIKPDERASLEAMFNLKFHVGGPKLRYFNIPDYKPQSLCQPEITNLIQYCKHWLTEDHDFVFKEVTGNNVMNSFENNESVYMSRYRESRKPRNFLLIQGSIQGPYLPSTISSDQCDTRIGCLEVLKVHPETPVQAIAVDMAYKYMELNRDEIINYYNPRVHFQATQSVKEPGTFKLGLSQLNPMSKSILDQVGKHKSEKGLFGEPLESINISSQIQQNECSRIIESILSNLEINVGEVTMSLANPRKTTGVDELLGKFYENELSKYLISILRKTAAWHIGHLIRDITESLIAHAGLKRSKYWSIHAYDHGGVILFILPSKSLEVVGSYIRYFTVFKDGIGLIDEENLDSKVDIDGVQWCFSKVMSIDLNRLLALNIAFEKALLATATWFQYYTEDQGHFPLQHALRSVFSFHFLLCVSQKMKICAIFDNLRYLIPAVTSLYSGYELLIEKFFERPFKSALEVYLYNIIKALLISLAQNNKVRFYSKVRLLGLTVDHSTVGASGVYPSLMSRVVYKHYRSLISEATTCFFLFEKGLHGNLNEEAKIHLETVEWARKFEAKERKYGDILMREGYTIDAIRVGDVQVEQQLFCQEVVELSAEELNKYLQAKSQVLSSNIMNKHWDKPYFSQTRNISLKGMSGALQEDGHLAASVTLIEAIRFLNRSQTNPNVIDMYEQTKQHKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYYDAIARVVPEEYISYGGDKKILNIQTALEKALRWASGSSEVITSTGNVIKFKRRLMYVSADATKWSPGDNSAKFKRFTQALYDGLSDEKLKCCVVDALRHVYETEFFMSRKLHRYIDSMDEHSEAVQDFLDFFKGGVSATVKGNWLQGNLNKCSSLFGAAVSLLFRRIWAELFPELECFFEFAHHSDDALFIYGYLEPEDDGTDWFLYVSQQIQAGNYHWHAVNQEMWKSMFNLHEHLLLMGSIKVSPKKTTVSPTNAEFLSTFFEGCAVSIPFIKILLGSLSDLPGLGFFDDLAAAQSRCVKAMDLGASPQLAQLAVVICTSKVERLYGTADGMVNSPVAFLKVTKAHVPIPLGGDGSMSIMELATAGIGMADKNILKQAFYSYKHTRRDGDRYVLGLFKFLMSLSEDVFQHDRLGEFSFVGKVQWKVFTPKNEFEFFDQFSQSYLKSWTNQHPVYDYIIPRGRDNLLVYLVRKLNDPSIVTAMTMQSPLQLRFRMQAKQHMKVCKLEGEWVTFREVLAAADSFATKYNPTEKDLDLFNTLVSCTFSKEYAWKDFLNEVRCEVVPTKHVHRSKIARTFTVREKDQAIQNPITAVIGYKYASTVDEISDVLDSSFFPDSLSADLQVMKEGVYRELGLDIGLPEVLKRIAPLLYKAGRSRVVIVEGNVEGTAESICSYWLRSMSLVKTIKVRPKKEVLRAVSLYSTKENIGLQDDVAATRLCIEVWRWCKANDQNVNDWLNALYFEKQTLMDWVERFRRKGVVPIDPEIQCIALLLYDVLGYKSVLQMQANRRAYSGKQYDAYCVQTYNEETRLYEGDLRVTFNFGLDCARLEIFWDKKEYILETSITQRHVLKLMMEEVTQELLRCGMRFKTEQVSHTRSLVLFKTESGFEWGKPNVPCIVFKHCALRTGLRTKQAINKEFMINVQADGFRAIAQMDMESPRFLLAHAYHTLRDVRYQAVQAVGNVWFQTAQHKLFINPIISSGLLENFMKGLPAAIPPAAYSLIMNKAKISVDLFMFNELLALVNPRNVLNLDGIEETSEGYSTVTSISSRQWSEEVSLMADDDIDDEEEFTIALDDIDFEQINLDEDIQHFLQDESAYTGDLTIQTEEVEVKRIRGVTRVLEPVKLIKSWVSKGLAIDKVYNPIGIVLMARYMSKNYDFSKIPLALLNPYDLTEFESVVKGWGETVNDRFLEVDNDAQRLVREKNILPEDILPDSLFSFRHVDVLLKRLFPHDPVSSFY", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3674-pf12426.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12426", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3674-pf12426.yaml" } ], "pfam_ids": [ "PF04196", "PF12426", "PF21991" ], "protein_name": "RNA-directed RNA polymerase L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12432", "PF22927", "PF22928", "PF22929" ], "protein_name": "Integrator complex subunit 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3445e1db9e7ebe7daacf0e067f217e3bd939ed05b78e4594ee285735c8a79dee", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNRAKPTTVRRPSAAAKPSGHPPPGDFIALGSKGQANESKTASTLLKPAPSGLPSERKRDAAAALSSASALTGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKEPSVVPIEVLPTVLLDEIEAAELEGNDDRIEGVLCGAVKQLKVTRAKPDSTLYLSLMYLAKIKPNIFATEGVIEALCSLLRRDASINFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSPHCKTFVDNIQTAFNTRMPPRSVLLQGEAGRVAGDLGAGSSPHPSLTEEEDSQTELLIAEEKLSPEQEGQLMPRYEELAESVEEYVLDMLRDQLNRRQPIDNVSRNLLRLLTSTCGYKEVRLLAVQKLEMWLQNPKLTRPAQDLLMSVCMNCNTHGSEDMDVISHLIKIRLKPKVLLNHFMLCIRELLSAHKDNLGTTIKLVIFNELSSARNPNNMQVLYTALQHSSELAPKFLAMVFQDLLTNKDDYLRASRALLREIIKQTKHEINFQAFCLGLMQERKEPQYLEMEFKERFVVHITDVLAVSMMLGITAQVKEAGIAWDKGEKRNLEVLRSFQNQIAAIQRDAVWWLHTVVPSISKLAPKDYVHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPILEDTLMRILVIGLSRELPLGPADAMELADHLVKRAAAVQADDVEVLKVGRTQLIDAVLNLCTYHHPENIQLPPGYQPPNLAISTLYWKAWPLLLVVAAFNPENIGLAAWEEYPTLKMLMEMVMTNNYSYPPCTLTDEETRTEMLNRELQTAQREKQEILAFEGHLAAASTKQTITESSSLLLSQLTSLDPQGPPRRPPPHILDQVKSLNQSLRLGHLLCRSRNPDFLLHIIQRQASSQSMPWLADLVQSSEGSLDVLPVQCLCEFLLHDAVDDAASGEEDDEGESKEQKAKKRQRQQKQRQLLGRLQDLLLGPKADEQTTCEVLDYFLRRLGSSQVASRVLAMKGLSLVLSEGSLRDGEEKEPPMEEDVGDTDVLQGYQWLLRDLPRLPLFDSVRSTTALALQQAIHMETDPQTISAYLIYLSQHTPVEEQAQHSDLALDVARLVVERSTIMSHLFSKLSPSAASDAVLSALLSIFSRYVRRMRQSKEGEEVYSWSESQDQVFLRWSSGETATMHILVVHAMVILLTLGPPRADDSEFQALLDIWFPEEKPLPTAFLVDTSEEALLLPDWLKLRMIRSEVLRLVDAALQDLEPQQLLLFVQSFGIPVSSMSKLLQFLDQAVAHDPQTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPPRRDSTEAPKPKSSPEQPIGQGRIRVGTQLRVLGPEDDLAGMFLQIFPLSPDPRWQSSSPRPVALALQQALGQELARVVQGSPEVPGITVRVLQALATLLSSPHGGALVMSMHRSHFLACPLLRQLCQYQRCVPQDTGFSSLFLKVLLQMLQWLDSPGVEGGPLRAQLRMLASQASAGRRLSDVRGGLLRLAEALAFRQDLEVVSSTVRAVIATLRSGEQCSVEPDLISKVLQGLIEVRSPHLEELLTAFFSATADAASPFPACKPVVVVSSLLLQEEEPLAGGKPGADGGSLEAVRLGPSSGLLVDWLEMLDPEVVSSCPDLQLRLLFSRRKGKGQAQVPSFRPYLLTLFTHQSSWPTLHQCIRVLLGKSREQRFDPSASLDFLWACIHVPRIWQGRDQRTPQKRREELVLRVQGPELISLVELILAEAETRSQDGDTAACSLIQARLPLLLSCCCGDDESVRKVTEHLSGCIQQWGDSVLGRRCRDLLLQLYLQRPELRVPVPEVLLHSEGAASSSVCKLDGLIHRFITLLADTSDSRALENRGADASMACRKLAVAHPLLLLRHLPMIAALLHGRTHLNFQEFRQQNHLSCFLHVLGLLELLQPHVFRSEHQGALWDCLLSFIRLLLNYRKSSRHLAAFINKFVQFIHKYITYNAPAAISFLQKHADPLHDLSFDNSDLVMLKSLLAGLSLPSRDDRTDRGLDEEGEEESSAGSLPLVSVSLFTPLTAAEMAPYMKRLSRGQTVEDLLEVLSDIDEMSRRRPEILSFFSTNLQRLMSSAEECCRNLAFSLALRSMQNSPSIAAAFLPTFMYCLGSQDFEVVQTALRNLPEYALLCQEHAAVLLHRAFLVGMYGQMDPSAQISEALRILHMEAVM", 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"data/traits/sequence/domain/interpro/integrator-complex-subunit-1-rpb2-binding-domain-ipr022145.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022145", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/integrator-complex-subunit-1-rpb2-binding-domain-ipr022145.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/int1-r3-pf22927.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22927", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/int1-r3-pf22927.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/ints1-ints2-bd-pf22929.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22929", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/ints1-ints2-bd-pf22929.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/ints1-r4-pf22928.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22928", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/ints1-r4-pf22928.yaml" }, { 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"MDRGKGSGSNRSQKKVPLGGELFALGKSVRDDSKSKILPIKGMSSSDRKREASTALASSSKRFRGNLKDAGAPDMSSGSSQCETWEQFAVDCDLDTVVETIYAALEQNDSETVGRLVCGVIKQTTTSSSRSKVDNIALLALIYVAKVQPSIFCTDIVACALLSFLRREANVKMRYNTNLHILFANLLTRGFMEISQWPEVLLRIYIDDAVNERYWADNELCAPLVKNICAAFKTRTPHISLLRWDVSSSLPSGQAHRDSMTVDDDSGDNSTQSLDASPLNTESEPIPDAMCTTKSRFSDAVVQKHVSDAIRDQLNKRQQQDNYTRNFLKFLCTTSGIAEVRCLSISRLELWIHNGKLVKFAQQLLSYICFNIKGRNTQDNEVLLVLVKMRLKTKPLINHYMSCLKEMIFLQPEILSTVMKLVVQNELSNTRNPNNMGMLATMFQTSADQSAATLAEIYQEFLLQRDDCLRTLRVFLRELVRMLRFDVNLVKFCKTFLSEREDLTPQIEMFEFKERIFNSMVDIVCLCMFLSATPQAREASLSLKTNRDTKNNHALLKLYNQMSQIQLDTVSWMYETVPTLFKIPAAEYHQALHKLLLLDSPEQYSRCDQWPSEPERGAILRIISETPIHEETLLRIILIGITKDIPFSIANTFDVLLLVIKRVSGMKATNIPAVQANKFDIIDFLFSMSEYHHPENIRLPAEYEPPKLAIIAFYWKAWLILLMISAHNPSSFGAFCWDHYPTMKMMMEICITNQFNNSSATKDELQIITMERDHILQFETYLAAQTSPHAVITEETAILITQLMLMDPMGTPRKVPSMVLDQLKFLNQTYKLGHLFCRCRKPDLLLDIIQRQGTTQSMPWLSDLVQNSEGDFSHLPVQCLCEFLLFNAHIINEENSRDAELVNFLRNLIFDGNLSHQIVCELLDYIFRRLSSTVKQSRVAALSGLKIIFRHSGDFENEWLLKSLQQIPHFYEVKPFIIPQLRAACQVENCPELIMAYIQFITAHTLNDPVNEMLDHVIDMAQLIVERSTMFQHIIISQEDYDYVPDENRIQTLKCLFVMFNNYIIKLREYHEPYEWTEYPDLLMVQFDDGVQLPLHINIIHAFIILLTYSNSNMPESIPILDYWFPPGRPAPVAFLPSMPQEQVQLLPDWLKLKMIRSSVDRLIEAALNDLTPDQIVLFVQNFGTPVNSMSKLLAMLDTAVLEQFDLVKNAILNKAYLAQLIEIQQARGAKNGHYTVQALDLHSHSQTVPDLPKISVVIQEAVEIDDYDSSDSDDRPTNFLATKEVAQTILTQPDQLTESRSDCRSLIQKLLDMLASPNSNRADVVNAITEVLAVGCSVTMSRHACTFLRTFFSCMLHSDKYHILENALQKNLSMFKHTFADSSLLQKSELYHESLVFMLRNSREIYAQQFKANTALVARKRIVRAIVQSFDQTKDSKTVAKSKSDQLFHNGLFIDWLSEMDPEIVSTQLMKERFLFSKSCSEFRFYLLSLINHQTNWDTIERIAEYLFKNFHEDYDYATVLNYFEALTTNPKLWKGRDKYMSKNVRPDAFFMLRTSELEPFSHFILHEGLSEVKLDSKNYDFKLCSRMNLLFKLTEKRRDLMVKVMEHVEKSSVSDYLKLQVLQQMYIMYPRIKFLKPGKTGEQAYKLQNLKGCQADKVSNNLITCLGSLVGKKDFETLSTDTELLLRKLAASHPLLFLRQLGVLSSIMQGRAQLSMKALREEHHFHRFVQILRTLELLQPTIFEEAYKNEIQNTLSCYFNFFKHHSNVKEACQMLNKFVQMLQAYINYNPSSALLFIEQYVGILKELAAKYTSLGKLQVLVQAVALLQHKSHSATELDDEEVKYEYDLDEHFDVKPSASKPVVTEDPIEVNPQTPIDPSSSRGPLSVLTLGSYSRSNYTDISPHFLDLVKIIKQSNTEDVVLGPMQELECLTSKRFVFINELFERLLNLIFSPSAQIRSIAFIILIRHLKHNPGNSDINLCTLNAYIQCLRDENSSVAATAIDNLPEMSVLLQEHAIDILTVAFSLGLKSCLNTGHQIRKVLQTLVIQHGY", 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"ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3679-pf12438.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12438", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3679-pf12438.yaml" } ], "pfam_ids": [ "PF12438" ], "protein_name": "Uncharacterized protein YqxA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIAYFGKCLLLVTIMFLGVLFGMQQANHGMLSMKGYHDPSLKGAFTLTDGKDNEKEASILGETVTAKDLVEKQKELEKVETFNMFSKAGKALSDTVTNTAQSMYEWIRDMNQ", "sequence_length": 112, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5e72131d1ba6143c23c2a936a89c7299179bd95d441a811acf494a8b2856443e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38425.json", "taxon_id": "224308", "uniprot_accession": "P38425", "uniprot_release": "2026_03" } ], "pfam_id": "PF12438", "short_name": "DUF3679", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pasteurella multocida (strain Pm70)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/copg-antitoxin-pf12441.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12441", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/copg-antitoxin-pf12441.yaml" } ], "pfam_ids": [ "PF12441" ], "protein_name": "Uncharacterized protein PM1122", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTIKEQEIYKNIDLWESDELGCSKETARISNFSVEDLQKSIQLQSISLRIQKDVLEDLKYIAKSYGIGYQPLMKQILKRFVDAEKQLLLREEVEFKKEFNKKRIYG", "sequence_length": 107, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "582b1a5f39123f53628183bcfa2ae40e2db2a778ed3c18d123f765fc70830cb8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CLT7.json", "taxon_id": "272843", "uniprot_accession": "Q9CLT7", "uniprot_release": "2026_03" } ], "pfam_id": "PF12441", "short_name": "CopG_antitoxin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12442", "short_name": "DUF3681", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12446", "short_name": "DUF3682", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12447", "short_name": "DUF3683", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12449", "short_name": "DUF3684", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porphyra purpurea", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3685-pf12452.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12452", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3685-pf12452.yaml" } ], "pfam_ids": [ "PF12452" ], "protein_name": "Uncharacterized protein ycf55", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNYWPNSQGPILNKEVAELLVRTSVKINKKLTNCSNEVLILDVFRTEVKRNLLKIILAELEKILLEIYTSNLDLSDVTNLTESILIDLFHRSIKRFCRLYELDYNSICQNVHDINYLMYDYKMLLQILIIQLIFGSSSKVKKTFNLFAENIPIKQVEIFLENYLIQLSNIIAHILIQNFETVQETNASYLCNVKFLSDRKLEKLKNNLVWNTLIQNYIERPRAIYESRYKVWVFYQDGLNCQYVYACRSTELYTLSSAQVLVTFLLEIQDFFIPKIKSTVFLIGQFIIYIGQNIFNQIMRTFLEIIRRSSNFKKQSSSL", "sequence_length": 320, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5ac51db36925a6f9b20cb310efd680a177c0329d2b302cb1bf0d13fe01c89452", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P51203.json", "taxon_id": "2787", "uniprot_accession": "P51203", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3685-pf12452.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12452", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3685-pf12452.yaml" } ], "pfam_ids": [ "PF00072", "PF12452", "PF30550" ], "protein_name": "Ycf55-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSESPLTIVIVDEDPVFRLGLITVLGRETGVQVLGEGETLDDLRQQLETLAPSILLIDPQFPRRSQSAWPLLRQLSSAYPQVKICLLTASLEYDQLLAAKTQGIAAYFPKGTAIADLVTGLKQVHFGQTCWPSLQTVNAPPLSLWEKLIWPLFRDGLGQIEQSLQQVQKSLQVPSLSDFDRLFWRGRERELKFAQWLVRNLLPQRLKTWHKATNILTATTTVLPPSPPSPRRSGVRTITLRPPSNLTALGQILQQMPLQVENLTAIPLELDILQPLKRQELLSLGQQQLETTINELKALRITPAQLPENCLSIVAEMWRSLSLTFFGKYCQPKSEFSLEQIQSLLEVYQPIICREKLVKIPFVVPLFHHLLFGEPLVVNQKAYPLGSTEAQQYSDLYAQNLVIQLANSTMVFILNYFADHEAIKLALYEYSMLSSRQVARFRNDLAWYYQFSRYWLNPKQIFESQHTLLYLTPAGIVTTQVYAPRQQELTQLRAVPWFVTIVLECRDALSPRVRSVIEFVGNGLVFLLTQVVGRAIGLVGKGIIQGIGNTWQESRSQQKRSN", "sequence_length": 562, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1d22dce2ef147ed33b628bfdd0ed8d965de468610e75421a7c50c830a2271087", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P74126.json", "taxon_id": "1111708", "uniprot_accession": "P74126", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyropia yezoensis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3685-pf12452.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12452", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3685-pf12452.yaml" } ], "pfam_ids": [ "PF12452" ], "protein_name": "Uncharacterized protein ycf55", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNYWPSSQGPTLNQEVAELLVRTSIKINKRLTNCSQEVLILDVFRTEVKRNLLKIILAELEKILLEIYNSNLDVNDITNLTENILIDLFHRCIKRFCKLYELDCIDIYQDIHDLNYLLNDYKMLLQILIIQLLFGSSQTVNKTFNLFTYNMPVKQVEIFLENYLIQLSNIIAHMLVQNFNTVNETNASYLCNVKFLSDRKLEKLKNNLIWNTIIKNYLERPRAIYESRYKVWGFYQEGLNCQYIYACRSNELQMLSPMQIIITFLLEVQDFFVPKIKSTIFLIGQIIIYAGQNLLNQIMRTSLEILRRSSNFKKQSNSL", "sequence_length": 320, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ab03f2f88ad01d15907d96fdc223b265ce262f417474cfebe1b76d183316d802", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1XDT4.json", "taxon_id": "2788", "uniprot_accession": "Q1XDT4", "uniprot_release": "2026_03" } ], "pfam_id": "PF12452", "short_name": "DUF3685", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12458", "short_name": "DUF3686", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dltx-pf12459.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12459", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dltx-pf12459.yaml" } ], "pfam_ids": [ "PF12459" ], "protein_name": "Uncharacterized membrane protein YwzH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQLMKQLYEKPAVKWTCHTGFYLMILLVLFFMYGFHTANTGSYIYNDF", "sequence_length": 49, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0b46e3ff2c539ee1393f9458daa1ef6d92500f22836e8bcbbaff6cdc2c5a9fb8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0H3T3.json", "taxon_id": "224308", "uniprot_accession": "C0H3T3", "uniprot_release": "2026_03" } ], "pfam_id": "PF12459", "short_name": "DltX", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Spiroplasma virus SpV1-R8A2 B", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3688-pf12461.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12461", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3688-pf12461.yaml" } ], "pfam_ids": [ "PF12461" ], "protein_name": "Uncharacterized protein ORF1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKSLSLFAIFILTFLGLVIPFITLTAFRPLNEEQYTLKQESSTGKGINETDFINTMFLRSSFFENWSETNYFINPTLKTSKNLLFNDKWYLDFLQDSYSTGVVYDKPGEIFLNYYRQWHSLKNKYMVEKFYDVKKENFLNDLTDFIYAFAVKYKMFDVSKEIVENVDRYKENHYPRVKLKQDNWKLITDYNWLKDNFDNKYYFVIWKQSYSKEWEIMKFKHNMRYDMKIESYIKNNSFKGLYRWDGDGEPQTPTIDKNTGEITDWNSYQQSRVKQFIDLSLYSVLQENIRVQQGGSADYENPNKVGTKRIIFDFETVDELDVKNIKKAIYRMILTVDEANLIISGSLELNNINNDDLSFNFSFMRTGMGEVFNFNGSIYSSLNSKDLKYYQQFSGQFDLSKFLQSFFASALVPVFQNRSLFIENGYIDNLQYDTVLVNFFALKLQNFNNILLIENINDKLQFDKLLNSMFKISQKFYTNYLRTIFDLENNTYVQGYNKKYGLLVNNGFKIYPRYFYFSDKYKQLDIKLYSAFKNRFYTINNYGSVFNYDFSVANNYNIKLNSGYVFGGDLQNKYGLQYKKIEEQKIGYNVFELQAQKENDMYRYYDFNFGIYNWQEINNGGLFPDKQWWQVQYVTPKGWWDFGAHIKNAVIWIVNTIPGVKQVNELASGVGKVFETVYSFFSQIFEVWKFNPALYSTITNIFLLIIFMKFVRLI", "sequence_length": 715, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2ef6f6c75e4ba551cd67030af7a3669d694b2cef8862bc38d770c9e1346f6ab1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P15892.json", "taxon_id": "10854", "uniprot_accession": "P15892", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Spiroplasma virus SpV1-C74", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3688-pf12461.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12461", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3688-pf12461.yaml" } ], "pfam_ids": [ "PF12461" ], "protein_name": "Uncharacterized protein ORF1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKSLSLFSIFILIFLGLVIPFITLTAFRPLNEEQYTLKQESSTGKGINETDFINTMFLRSSFFENWSETNYFINPTLKTSKNLLFNDKWYLDFLQDSYSTGVVYDKPNEVFLNYYQQWHSLKNRYMVEKFYDVKKENFLNDLIDFIYAFAVKYKMFNVSKEIVKNVDRYKENHYPRVKLNQDNWKLIDDIENVDKYKWEDETYIGITKIWKNKEWNWIIEDWKLHPPFSNVYLSSYKAIYRWTGVGKPQLPTIDKNTGEITDWNSYQQTRVKEFIDLSLYSVLLENTRVQQGGSADYENPNKVGTKRIIFDFETVDELDVKNIKKAIYRMILTVDEANLIISGSLELNNINNDDLSFNFSFMRTGMGEVFNFNGSIYSSLNSKDLKYYQQFSGQFDLSKFLQSFFASALVPVFQNRSSFIENGYIDNLQYDTVLVNFFALKLQNFNNILLSENINDKLQFDKLLNSMFKISQKFYTNYLRTIFDLENNTYVQGYNKKYGLLVNNGFKIYPRYFYFSDKYKQLDIKLYSAFKNRFYTINNYGSVFNYDFSVANNYNISLNSGYVFGGDLQNKYGLQYKKIEEQKIGYNVFELQAQKENDMYRYYDFNFGIYNWQEINNGGLFPDKQWWQVQYITPKGWWDFGAHIKNAVIWIVNTIPGVKQVNELASGVGKVFETVYSFFSQIFEVWKFNPALYSTITNIFLLIIFMKFVRLI", "sequence_length": 713, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "954717d2a43ddeb49a390090ef525247cdc913180fbba44862f5c1961311d332", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q88418.json", "taxon_id": "185959", "uniprot_accession": "Q88418", "uniprot_release": "2026_03" } ], "pfam_id": "PF12461", "short_name": "DUF3688", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3689-pf12463.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12463", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3689-pf12463.yaml" } ], "pfam_ids": [ "PF12463" ], "protein_name": "Short transient receptor potential channel 4-associated protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKQSKWSGIPQLLLKLHTTSHLHSDFVECQNILKEISPLLSMEAMAFVTEERKLTQETTYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKISDEMSKDCLSILYNTCVCTEGVTKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQQLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVERLCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQASIVFPPPGASEENGLPHTSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGLNNLFDKLIWRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQELNELSAISLKANIPEVEAVLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTSYADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRFNKYINTDAKFQVFLKQINSSLVDSNMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYISQVPTQMSFLFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKKYPGFLLNNFHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALVSYIEEPYMDIDRDFTEE", "sequence_length": 797, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8c944f197fdbfa404dddd3d9873b5ad9187099ef610edb3be022f61c083246bf", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TEL6.json", "taxon_id": "9606", "uniprot_accession": "Q8TEL6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3689-pf12463.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12463", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3689-pf12463.yaml" } ], "pfam_ids": [ "PF12463" ], "protein_name": "Short transient receptor potential channel 4-associated protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAPAAAGAGASRGRRLAATAAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKLSKWSGIPQLLLKLYATSHLHSDFVECQSILKEISPLLSMEAMAFVTEDRKFTQEATYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKISDEMSKDCLSILYNTCVCTEGVTKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQQLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVERLCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQAPTVFPSLGTSEEGGLPHTSARAQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGLNNLFDKLIWRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQELNELSAISLKANIPEVEAVLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTSYADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRFNKYINTDAKFQVFLKQINSSLVDSNMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYISQVPTQMSFLFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKKYPGFLLNNFHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALVSYIEEPYMDIDRDFTEE", "sequence_length": 797, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70902188e8f882bac3834a88e2e71c4ffc9dc87e457bd572c3e976a95c73778a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JLV2.json", "taxon_id": "10090", "uniprot_accession": "Q9JLV2", "uniprot_release": "2026_03" } ], "pfam_id": "PF12463", "short_name": "DUF3689", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cas10-cmr2-palm2-pf22335.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22335", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cas10-cmr2-palm2-pf22335.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cmr2-hel-dom1-pf20822.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20822", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cmr2-hel-dom1-pf20822.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cmr2-hel-dom2-pf20824.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20824", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cmr2-hel-dom2-pf20824.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cmr2-n-pf12469.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cmr2-n-pf12469.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cmr2-zn-bd-pf20823.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cmr2-zn-bd-pf20823.yaml" } ], "pfam_ids": [ "PF12469", "PF20822", "PF20823", "PF20824", "PF22335" ], "protein_name": "CRISPR system Cmr subunit Cmr2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVNIKEKLFVYLHDPPDKALKIENHEERSKKILSSGNIQYSRTDKVKQADALSSKTQRFIIRTKENKEPVIDFLGRSSGKYFHVGYPVFIHPISTEIKRYETLEKYIDLGRSNRGERFVNEFLERVSKLEGDVLKEVFEDASNKFKGEESKQWAYIWQFYPVKLKEGVKEFAKSELKLKEEEAEKFAEEFVNLPADTRFPDHAIWTHLDLTSALSVKDPTLLRIKIVPVQPFIANSRKQLDLWASSHLLSMLMYKALEVIVDKFGPEHVIYPSLRDQPFFLKFYLGENIGDEILVANLPNKALAIVSGKEAEKIEEEIKKRIRDFLLQLYREAVDWAVENGVVKVDRSEKDSMLKEAYLKIVREYFTVSITWVSLSEKEDIYQVTENAGLSDEDVKKWLKFAEKKENSRVLERIAIYPLLVKILDSLGERKVTEERFEKSEQLKGWKCHVCGENLAIFGDMYDHDNLKSLWLDEEPLCPMCLIKRYYPVWIRSKTGQKIRFESVVDVALLYKNWRKIFDEKYGKDLVSKAREVSEDFVKDNMLVDSDLYYSSTWESGLSKKLKNKKEIDEEKVKEVVDFLNAAYKEIGNPPKYYAILVMDGDDMGKVISGEVLGEISTRIHPNIRDYVEIPEAKYYSTPQVHVAISQALANFSIREVRSVVKDEGLLIYAGGDDVLAILPVDKALEVAYKIRKEFGKSFENGSLLPGWKLSAGILIVHYKHPLYDALEKARDLLNNKAKNVPGKDTLAIGLLKRSGSYYISLVGWELIRVFYNSELRKKLLEEKGGVGKRFIYHVLREVDTWPKVGIDEMLKFEVIRHIRGRNKEETKELREKIYGEIKDLLEHVRGNNEVEKVRGLFTFLKIITDAEVFP", "sequence_length": 871, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fe4e2b74f546e70aa4d77f6be00d73ceaf5ba4a8648d8692555e2dd2e2fd20e1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8U1S6.json", "taxon_id": "186497", "uniprot_accession": "Q8U1S6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cmr2-n-pf12469.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cmr2-n-pf12469.yaml" } ], "pfam_ids": [ "PF12469", "PF22335" ], "protein_name": "CRISPR system CMR subunit Cmr2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTDDNSREEFLNYKIMALLHDPPNKAWVITSRAHNLTVQLRSVRARKSHERVAKYIINQLFGDINSKTVDNADKLASSIDRYLGSIVYKEYSLFRNRSIFLKNILLSNIQRDVGNLFPKDKSKLDNLISEYKKLLNVTNTTNLNILKYQLFYLIYELIWIDSRYENTPAETRNPTHTIFDHLYATAAMMNWIFSLEKEAKGYLLGIDTIGVADFISKGKKTRDLWISSYLVSALLWYVITWFIEEYGPDVILFPSLRFNQFYAFYLLEKLRKEKISEDVIDEIKELITKYIFNGDDLFEKLEIPPYPIIPGRITLILPGLIREGEEYTQVPDDNYFISKVKERYNEGWRKLIEGLKCYSELKREDGFWNLVCRVLKLTEDLLQTTPLNIRVKQVSVTKDEIFNNSKLRSDSWKIYDNKYRQLVSEFKKSKLVKVTPESRLKLFELTKFDKLPQIGEKSKRGYEFCTSCGVLPAVIIMPKEDEFEKKLIELGIARDEKDVRSIKNMISPGERLCPWCLVKRALGAEPRLMRILLLGDLCSVEKIVNEIVSKDVKIEIPSTSDIASIKTFEEMIEKKNEICEDLKEEEVCEKPNESMLSMWQRFNKNYYTGINLTIDPEEYWFSEKRRRYYFSLFRRHRITFPSPYYALVRADSDYLGDLLEGKLTPYLAGIIDSGDYANISEKKEEVNKLLEEYLVNAGSGPIVDYVKTVLECIRGNLNKCSCAVKIYSNEVAEVMFRANRLLRKKLEKIDVEREVENSLKYFRTILKEGRIIVTPAWHVSISSALNRGLLVELELINKHKGFVIYAGGDDLLAMLPVDEVLDFVKESRRAFAGVSTGRLGNMCLENGFARINNAYYPSLPIVGRSYSVIIAHYADPLFFVINDSYNLLEEGKEMIRYRVMYNGEYKDAKKDVAIFRYQGLTSVIPLSLKRPIVNSVSDFNEIASIIDLILELKKRIDEGHISVSLLYDYEEYKHLIVASDEKYLTEFLVKDWIKRNSLRKHVEFTIDEKLYGVRLTIENYPIKIPNDLISNIVYTLRIIYGGEK", "sequence_length": 1045, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "75ccf7021d77408d9261af8dd86933a163370e012f59167f11ba14e6aae05675", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q97WX0.json", "taxon_id": "273057", "uniprot_accession": "Q97WX0", "uniprot_release": "2026_03" } ], "pfam_id": "PF12469", "short_name": "Cmr2_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12472", "short_name": "DUF3693", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/kif1b-pf12423.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12423", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/kif1b-pf12423.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O60333", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00169", "PF00225", "PF00498", "PF12423", "PF12473", "PF16183" ], "protein_name": "Kinesin-like protein KIF1B", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ae31ab79c1473fd51c92246c35a2549beaf13780e87213ef927d634f417de338", "sequence_version": 5, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSGASVKVAVRVRPFNSRETSKESKCIIQMQGNSTSIINPKNPKEAPKSFSFDYSYWSHTSPEDPCFASQNRVYNDIGKEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGKQEESQAGIIPQLCEELFEKINDNCNEEMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKHDNETNLSTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVDNCTSKSKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIKCNAVINEDPNAKLVRELKEEVTRLKDLLRAQGLGDIIDIDPLIDDYSGSGSKYLKDFQNNKHRYLLASENQRPGHFSTASMGSLTSSPSSCSLSSQVGLTSVTSIQERIMSTPGGEEAIERLKESEKIIAELNETWEEKLRKTEAIRMEREALLAEMGVAIREDGGTLGVFSPKKTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCIFRSERSNSGEVIVTLEPCERSETYVNGKRVSQPVQLRSGNRIIMGKNHVFRFNHPEQARAEREKTPSAETPSEPVDWTFAQRELLEKQGIDMKQEMEKRLQEMEILYKKEKEEADLLLEQQRLDYESKLQALQKQVETRSLAAETTEEEEEEEEVPWTQHEFELAQWAFRKWKSHQFTSLRDLLWGNAVYLKEANAISVELKKKVQFQFVLLTDTLYSPLPPELLPTEMEKTHEDRPFPRTVVAVEVQDLKNGATHYWSLEKLKQRLDLMREMYDRAGEMASSAQDESETTVTGSDPFYDRFHWFKLVGSSPIFHGCVNERLADRTPSPTFSTADSDITELADEQQDEMEDFDDEAFVDDAGSDAGTEEGSDLFSDGHDPFYDRSPWFILVGRAFVYLSNLLYPVPLIHRVAIVSEKGEVRGFLRVAVQAIAADEEAPDYGSGIRQSGTAKISFDNEYFNQSDFSSVAMTRSGLSLEELRIVEGQGQSSEVITPPEEISRINDLDLKSSTLLDGKMVMEGFSEEIGNHLKLGSAFTFRVTVLQASGILPEYADIFCQFNFLHRHDEAFSTEPLKNNGRGSPLAFYHVQNIAVEITESFVDYIKTKPIVFEVFGHYQQHPLHLQGQELNSPPQPCRRFFPPPMPLSKPVPATKLNTMSKTSLGQSMSKYDLLVWFEISELEPTGEYIPAVVDHTAGLPCQGTFLLHQGIQRRITVTIIHEKGSELHWKDVRELVVGRIRNKPEVDEAAVDAILSLNIISAKYLKSSHNSSRTFYRFEAVWDSSLHNSLLLNRVTPYGEKIYMTLSAYLELDHCIQPAVITKDVCMVFYSRDAKISPPRSLRSLFGSGYSKSPDSNRVTGIYELSLCKMSDTGSPGMQRRRRKILDTSVAYVRGEENLAGWRPRGDSLILEHQWELEKLELLHEVEKTRHFLLLRERLGDSIPKSLSDSLSPSLSSGTLSTSTSISSQISTTTFESAITPSESSGYDSGDIESLVDREKELATKCLQLLTHTFNREFSQVHGSVSDCKLSDISPIGRDPSESSFSSATLTPSSTCPSLVDSRSNSLDQKTPEANSRASSPCPEFEQFQIVPAVETPYLARAGKNEFLNLVPDIEEIRPSSVVSKKGYLHFKEPLYSNWAKHFVVVRRPYVFIYNSDKDPVERGIINLSTAQVEYSEDQQAMVKTPNTFAVCTKHRGVLLQALNDKDMNDWLYAFNPLLAGTIRSKLSRRCPSQSKY", "sequence_length": 1816, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ae31ab79c1473fd51c92246c35a2549beaf13780e87213ef927d634f417de338", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/O60333.json", "taxon_id": "9606", "uniprot_accession": "O60333", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q12756", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00169", "PF00225", "PF00498", "PF12423", "PF12473", "PF16183" ], "protein_name": "Kinesin-like protein KIF1A", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d8605513f735743dc494c148346f501df78f854530e8c54d07b8de6bda701042", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRCNAVINEDPNNKLIRELKDEVTRLRDLLYAQGLGDITDMTNALVGMSPSSSLSALSSRAASVSSLHERILFAPGSEEAIERLKETEKIIAELNETWEEKLRRTEAIRMEREALLAEMGVAMREDGGTLGVFSPKKTPHLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVTEPSILRSGNRIIMGKSHVFRFNHPEQARQERERTPCAETPAEPVDWAFAQRELLEKQGIDMKQEMEQRLQELEDQYRREREEATYLLEQQRLDYESKLEALQKQMDSRYYPEVNEEEEEPEDEVQWTERECELALWAFRKWKWYQFTSLRDLLWGNAIFLKEANAISVELKKKVQFQFVLLTDTLYSPLPPDLLPPEAAKDRETRPFPRTIVAVEVQDQKNGATHYWTLEKLRQRLDLMREMYDRAAEVPSSVIEDCDNVVTGGDPFYDRFPWFRLVGRAFVYLSNLLYPVPLVHRVAIVSEKGEVKGFLRVAVQAISADEEAPDYGSGVRQSGTAKISFDDQHFEKFQSESCPVVGMSRSGTSQEELRIVEGQGQGADVGPSADEVNNNTCSAVPPEGLLLDSSEKAALDGPLDAALDHLRLGNTFTFRVTVLQASSISAEYADIFCQFNFIHRHDEAFSTEPLKNTGRGPPLGFYHVQNIAVEVTKSFIEYIKSQPIVFEVFGHYQQHPFPPLCKDVLSPLRPSRRHFPRVMPLSKPVPATKLSTLTRPCPGPCHCKYDLLVYFEICELEANGDYIPAVVDHRGGMPCMGTFLLHQGIQRRITVTLLHETGSHIRWKEVRELVVGRIRNTPETDESLIDPNILSLNILSSGYIHPAQDDRTFYQFEAAWDSSMHNSLLLNRVTPYREKIYMTLSAYIEMENCTQPAVVTKDFCMVFYSRDAKLPASRSIRNLFGSGSLRASESNRVTGVYELSLCHVADAGSPGMQRRRRRVLDTSVAYVRGEENLAGWRPRSDSLILDHQWELEKLSLLQEVEKTRHYLLLREKLETAQRPVPEALSPAFSEDSESHGSSSASSPLSAEGRPSPLEAPNERQRELAVKCLRLLTHTFNREYTHSHVCVSASESKLSEMSVTLLRDPSMSPLGVATLTPSSTCPSLVEGRYGATDLRTPQPCSRPASPEPELLPEADSKKLPSPARATETDKEPQRLLVPDIQEIRVSPIVSKKGYLHFLEPHTSGWARRFVVVRRPYAYMYNSDKDTVERFVLNLATAQVEYSEDQQAMLKTPNTFAVCTEHRGILLQAASDKDMHDWLYAFNPLLAGTIRSKLSRRRSAQMRV", "sequence_length": 1690, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d8605513f735743dc494c148346f501df78f854530e8c54d07b8de6bda701042", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q12756.json", "taxon_id": "9606", "uniprot_accession": "Q12756", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3694-pf12473.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3694-pf12473.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5R372", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00566", "PF00640", "PF12473" ], "protein_name": "Rab GTPase-activating protein 1-like", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "38beaa137bfd3de345cfa7893a98b80f84909205d5bc73bcd91b777f9069f1c6", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEVRASLQKVSGSSDSVATMNSEEFVLVPQYADDNSTKHEEKPQLKIVSNGDEQLEKAMEEILRDSEKRPSSLLVDCQSSSEISDHSFGDIPASQTNKPSLQLILDPSNTEISTPRPSSPGGLPEEDSVLFNKLTYLGCMKVSSPRNEVEALRAMATMKSSSQYPFPVTLYVPNVPEGSVRIIDQSSNVEIASFPIYKVLFCARGHDGTTESNCFAFTESSHGSEEFQIHVFSCEIKEAVSRILYSFCTAFKRSSRQVSDVKDSVIPTPDSDVFTFSVSLEVKEDDGKGNFSPVPKDRDKFYFKLKQGIEKKVVITVQQLSNKELAIERCFGMLLSPGRNVKNSDMHLLDMESMGKSYDGRAYVITGMWNPNAPVFLALNEETPKDKQVYMTVAVDMVVTEVVEPVRFLLETVVRVYPANERFWYFSRKTFTETFFMRLKQSEGKGHTNAGDAIYEVVSLQRESDKEEPVTPTSGGGPMSPQDDEAEEESDNELSSGTGDVSKDCPEKILYSWGELLGKWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAMLDRYRILITKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKFVYL", "sequence_length": 815, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "38beaa137bfd3de345cfa7893a98b80f84909205d5bc73bcd91b777f9069f1c6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5R372.json", "taxon_id": "9606", "uniprot_accession": "Q5R372", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3694-pf12473.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3694-pf12473.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/kif1b-pf12423.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12423", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/kif1b-pf12423.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/kinesin-assoc-pf16183.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16183", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/kinesin-assoc-pf16183.yaml" } ], "pfam_ids": [ "PF00225", "PF00498", "PF12423", "PF12473", "PF16183" ], "protein_name": "Kinesin-like protein KIF13A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDTKVKVAVRVRPMNRRELELNTKCVVEMEGNQTVLHPPPSNTKQGERKPPKVFAFDYCFWSMDESNTTKYAGQEVVFKCLGEGILEKAFQGYNACIFAYGQTGSGKSFSMMGHAEQLGLIPRLCCALFKRISLEQNESQTFKVEVSYMEIYNEKVRDLLDPKGSRQSLKVREHKVLGPYVDGLSQLAVTSFEDIESLMSEGNKSRTVAATNMNEESSRSHAVFNIIITQTLYDLQSGNSGEKVSKVSLVDLAGSERVSKTGAAGERLKEGSNINKSLTTLGLVISSLADQAAGKGKSKFVPYRDSVLTWLLKDNLGGNSQTSMIATISPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAKVIRELREEVEKLREQLSQAEAMKAPELKEKLEESEKLIKELTVTWEEKLRKTEEIAQERQRQLESMGISLEMSGIKVGDDKCYLVNLNADPALNELLVYYLKDHTRVGADTSQDIQLFGIGIQPQHCEIDIASDGDVTLTPKENARSCVNGTLVCSTTQLWHGDRILWGNNHFFRINLPKRKRRDWLKDFEKETGPPEHDLDAASEASSEPDYNYEFAQMEVIMKTLNSNDPVQNVVQVLEKQYLEEKRSALEEQRLMYERELEQLRQQLSPDRQPQSSGPDRLAYSSQTAQQKVTQWAEERDELFRQSLAKLREQLVKANTLVREANFLAEEMSKLTDYQVTLQIPAANLSANRKRGAIVSEPAIQVRRKGKSTQVWTIEKLENKLIDMRDLYQEWKEKVPEAKRLYGKRGDPFYEAQENHNLIGVANVFLECLFCDVKLQYAVPIISQQGEVAGRLHVEVMRVTGAVPERVVEDDSSENSSESGSLEVVDSSGEIIHRVKKLTCRVKIKEATGLPLNLSNFVFCQYTFWDQCESTVAAPVVDPEVPSPQSKDAQYTVTFSHCKDYVVNVTEEFLEFISDGALAIEVWGHRCAGNGSSIWEVDSLHAKTRTLHDRWNEVTRRIEMWISILELNELGEYAAVELHQAKDVNTGGIFQLRQGHSRRVQVTVKPVQHSGTLPLMVEAILSVSIGCVTARSTKLQRGLDSYQRDDEDGDDMDSYQEEDLNCVRERWSDALIKRREYLDEQIKKVSNKTEKTEDDVEREAQLVEQWVGLTEERNAVLVPAPGSGIPGAPADWIPPPGMETHIPVLFLDLNADDLSANEQLVGPHASGVNSILPKEHGSQFFYLPIIKHSDDEVSATASWDSSVHDSVHLNRVTPQNERIYLIVKTTVQLSHPAAMELVLRKRIAANIYNKQSFTQSLKRRISLKNIFYSCGVTYEIVSNIPKATEEIEDRETLALLAARSENEGTSDGETYIEKYTRGVLQVENILSLERLRQAVTVKEALSTKARHIRRSLSTPNVHNVSSSRPDLSGFDEDDKGWPENQLDMSDYSSSYQDVACYGTLPRDSPRRNKEGCTSETPHALTVSPFKAFSPQPPKFFKPLMPVKEEHKKRIALEARPLLSQESMPPPQAHNPGCIVPSGSNGSSMPVEHNSKREKKIDSEEEENELEAINRKLISSQPYVPVEFADFSVYNASLENREWFSSKVDLSNSRVLEKEVSRSPTTSSITSGYFSHSASNATLSDMVVPSSDSSDQLAIQTKDADSTEHSTPSLVHDFRPSSNKELTEVEKGLVKDKIIVVPLKENSALAKGSPSSQSIPEKNSKSLCRTGSCSELDACPSKISQPARGFCPREVTVEHTTNILEDHSFTEFMGVSEGKDFDGLTDSSAGELSSRRSLPNKTGGKTVSDGLHHPSQLHSKLENDQVIIPEAAFWVLCCQ", "sequence_length": 1805, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9df364b936a4692e5c027e1b7e4bcc054a9c3904800dd91f4ad0973cf7589549", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H1H9.json", "taxon_id": "9606", "uniprot_accession": "Q9H1H9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3694-pf12473.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3694-pf12473.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/kif1b-pf12423.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12423", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/kif1b-pf12423.yaml" } ], "pfam_ids": [ "PF00225", "PF00498", "PF01302", "PF12423", "PF12473", "PF16183" ], "protein_name": "Kinesin-like protein KIF13B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDSKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKHIVNHAVVNEDPNARIIRDLREEVEKLREQLTKAEAMKSPELKDRLEESEKLIQEMTVTWEEKLRKTEEIAQERQKQLESLGISLQSSGIKVGDDKCFLVNLNADPALNELLVYYLKEHTLIGSANSQDIQLCGMGILPEHCIIDITSEGQVMLTPQKNTRTFVNGSSVSSPIQLHHGDRILWGNNHFFRLNLPKKKKKAEREDEDQDPSMKNENSSEQLDVDGDSSSEVSSEVNFNYEYAQMEVTMKALGSNDPMQSILNSLEQQHEEEKRSALERQRLMYEHELEQLRRRLSPEKQNCRSMDRFSFHSPSAQQRLRQWAEEREATLNNSLMRLREQIVKANLLVREANYIAEELDKRTEYKVTLQIPASSLDANRKRGSLLSEPAIQVRRKGKGKQIWSLEKLDNRLLDMRDLYQEWKECEEDNPVIRSYFKRADPFYDEQENHSLIGVANVFLESLFYDVKLQYAVPIINQKGEVAGRLHVEVMRLSGDVGERIAGGDEVAEVSFEKETQENKLVCMVKILQATGLPQHLSHFVFCKYSFWDQQEPVIVAPEVDTSSSSVSKEPHCMVVFDHCNEFSVNITEDFIEHLSEGALAIEVYGHKINDPRKNPALWDLGIIQAKTRSLRDRWSEVTRKLEFWVQILEQNENGEYCPVEVISAKDVPTGGIFQLRQGQSRRVQVEVKSVQESGTLPLMEECILSVGIGCVKVRPLRAPRTHETFHEEEEDMDSYQDRDLERLRRKWLNALTKRQEYLDQQLQKLVSKRDKTEDDADREAQLLEMRLTLTEERNAVMVPSAGSGIPGAPAEWTPVPGMETHIPVIFLDLNADDFSSQDNLDDPEAGGWDATLTGEEEEEFFELQIVKQHDGEVKAEASWDSAVHGCPQLSRGTPVDERLFLIVRVTVQLSHPADMQLVLRKRICVNVHGRQGFAQSLLKKMSHRSSIPGCGVTFEIVSNIPEDAQGVEEREALARMAANVENPASADSEAYIEKYLRSVLAVENLLTLDRLRQEVAVKEQLTGKGKLSRRSISSPNVNRLSGSRQDLIPSYSLGSNKGRWESQQDVSQTTVSRGIAPAPALSVSPQNNHSPDPGLSNLAASYLNPVKSFVPQMPKLLKSLFPVRDEKRGKRPSPLAHQPVPRIMVQSASPDIRVTRMEEAQPEMGPDVLVQTMGAPALKICDKPAKVPSPPPVIAVTAVTPAPEAQDGPPSPLSEASSGYFSHSVSTATLSDALGPGLDAAAPPGSMPTAPEAEPEAPISHPPPPTAVPAEEPPGPQQLVSPGRERPDLEAPAPGSPFRVRRVRASELRSFSRMLAGDPGCSPGAEGNAPAPGAGGQALASDSEEADEVPEWLREGEFVTVGAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRATGPVRRRSTGLRLGAPEARRSATLSGSATNLASLTAALAKADRSHKNPENRKSWAS", "sequence_length": 1826, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "239316c1c2762c8a1d1c92f55c1cc98e53258281b03ef8802c758f0b72bead81", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NQT8.json", "taxon_id": "9606", "uniprot_accession": "Q9NQT8", "uniprot_release": "2026_03" } ], "pfam_id": "PF12473", "short_name": "DUF3694", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12476", "short_name": "DUF3696", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uba-domain-found-in-ubiquitin-associated-protein-2-ubap-2-like-protein-cd14277.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd14277", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uba-domain-found-in-ubiquitin-associated-protein-2-ubap-2-like-protein-cd14277.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ubiquitin-associated-domain-ipr015940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ubiquitin-associated-domain-ipr015940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ubiquitin-associated-protein-2-uba-domain-ipr060532.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR060532", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ubiquitin-associated-protein-2-uba-domain-ipr060532.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/uba-ubap2-pf28540.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28540", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/uba-ubap2-pf28540.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ubap2-lig-pf12478.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12478", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ubap2-lig-pf12478.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/uba.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/uba.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q14157", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12478", "PF28540" ], "protein_name": "Ubiquitin-associated protein 2-like", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "190effca1e890aea3cd8a19da929889e5ded0ee1e258263262068e5b589e998f", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNSSGNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSTMENDSSNLDPSQAPSLAQPLVFSNSKQTAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKNPSDSAVHSPFTKRQAFTPSSTMMEVFLQEKSPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLNETVSAASLLTTTNQHSSSLGGLSHSEEIPNTTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN", "sequence_length": 1087, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "190effca1e890aea3cd8a19da929889e5ded0ee1e258263262068e5b589e998f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q14157.json", "taxon_id": "9606", "uniprot_accession": "Q14157", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uba-domain-found-in-ubiquitin-associated-protein-2-ubap-2-like-protein-cd14277.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd14277", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uba-domain-found-in-ubiquitin-associated-protein-2-ubap-2-like-protein-cd14277.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ubiquitin-associated-domain-ipr015940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR015940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ubiquitin-associated-domain-ipr015940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ubiquitin-associated-protein-2-uba-domain-ipr060532.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR060532", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ubiquitin-associated-protein-2-uba-domain-ipr060532.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/uba-ubap2-pf28540.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28540", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/uba-ubap2-pf28540.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ubap2-lig-pf12478.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12478", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ubap2-lig-pf12478.yaml" } ], "pfam_ids": [ "PF12478", "PF28540" ], "protein_name": "Ubiquitin-associated protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMTSVSSDHCRGAREKPQISAAQSTQPQKQVVQATAEQMRLAQVIFDKNDSDFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINILLEGNSDTTSWETVGCKKKNFAKENSENKENREKKSEKESSRGRGNNNRKGRGGNRGREFRGEENGIDCNQVDKPSDRGKRARGRGFGRGRGRGAGRFSTQGMGTFNPADYSDSTSTDVCGTKLVVWEAAQNGADEGTELASNTHNIAQDLSNKSSYGLKGAWKNSVEEWTTEDWTEDLSETKVFTASSAPAENHILPGQSIDLVALLQKPVPHSQASEANSFETSQQQGFGQALVFTNSQHNNQMAPGTGSSTAVNSCSPQSLSSVLGSGFGELAPPKMANITSSQILDQLKAPSLGQFTTTPSTQQNSTSHPTTTTSWDLKPPTSQSSVLSHLDFKSQPEPSPVLSQLSQRQQHQSQAVTVPPPGLESFPSQAKLRESTPGDSPSTVNKLLQLPSTTIENISVSVHQPQPKHIKLAKRRIPPASKIPASAVEMPGSADVTGLNVQFGALEFGSEPSLSEFGSAPSSENSNQIPISLYSKSLSEPLNTSLSMTSAVQNSTYTTSVITSCSLTSSSLNSASPVAMSSSYDQSSVHNRIPYQSPVSSSESAPGTIMNGHGGGRSQQTLDTPKTTGPPSALPSVSSLPSTTSCTALLPSTSQHTGDLTSSPLSQLSSSLSSHQSSLSAHAALSSSTSHTHASVESASSHQSSATFSTAATSVSSSASSGASLSSSMNTANSLCLGGTPASASSSSSRAAPLVTSGKAPPNLPQGVPPLLHNQYLVGPGGLLPAYPIYGYDELQMLQSRLPVDYYGIPFAAPTALASRDGSLANNPYPGDVTKFGRGDSASPAPATTPAQPQQSQSQTHHTAQQPFVNPALPPGYSYTGLPYYTGMPSAFQYGPTMFVPPASAKQHGVNLSTPTPPFQQASGYGQHGYSTGYDDLTQGTAAGDYSKGGYAGSSQAPNKSAGSGPGKGVSVSSSTTGLPDMTGSVYNKTQTFDKQGFHAGTPPPFSLPSVLGSTGPLASGAAPGYAPPPFLHILPAHQQPHSQLLHHHLPQDAQSGSGQRSQPSSLQPKSQASKPAYGNSPYWTN", "sequence_length": 1119, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d00b686addc778c87fc99e85cd5327a7402c39941bffc00eed2f4129dd49256e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T6F2.json", "taxon_id": "9606", "uniprot_accession": "Q5T6F2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uba-domain-found-in-ubiquitin-associated-protein-2-ubap-2-like-protein-cd14277.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd14277", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uba-domain-found-in-ubiquitin-associated-protein-2-ubap-2-like-protein-cd14277.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ubiquitin-associated-protein-2-uba-domain-ipr060532.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR060532", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ubiquitin-associated-protein-2-uba-domain-ipr060532.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/uba-ubap2-pf28540.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28540", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/uba-ubap2-pf28540.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ubap2-lig-pf12478.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12478", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ubap2-lig-pf12478.yaml" } ], "pfam_ids": [ "PF12478", "PF28540" ], "protein_name": "Ubiquitin-associated protein 2-like", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGTKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNSSGNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGSTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN", "sequence_length": 1107, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c3bcb8470b6ae36fcbd5ad7296edca05d2738a30a7d1baf0efe4d2ff1d7326a2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q80X50.json", "taxon_id": "10090", "uniprot_accession": "Q80X50", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-imaginal-disc-growth-go0045571.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0045571", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-imaginal-disc-growth-go0045571.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uba-domain-found-in-ubiquitin-associated-protein-2-ubap-2-like-protein-cd14277.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd14277", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uba-domain-found-in-ubiquitin-associated-protein-2-ubap-2-like-protein-cd14277.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ubap2-lig-pf12478.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12478", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ubap2-lig-pf12478.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/uba-like-superfamily-ipr009060.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009060", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/uba-like-superfamily-ipr009060.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/ubiquitin-associated-uba-domain-1-10-8-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.8.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ubiquitin-associated-uba-domain-1-10-8-10.yaml" } ], "pfam_ids": [ "PF12478" ], "protein_name": "Protein lingerer", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTQTRSGGGGGGGHARNQKKSNASNSGGGGTGHHDGVSHAAAAGKKGGQDASKTDKPEKAQPKATTEQLRIAQITNSTTEDPQINEKVLLLLTMTQRSEEEVCCALNECDYDLEAAANFLIEELPQGAFAKYEKKRKNKAANNTADGAAGDGDWADGNGNADRREKSRNRSSNRGGTRGSSDSRGWRGRETRENERNQRESREPWSGQNAGQDRGDDRANDNYRGQRNGGGRSGPGGGGRGGGFVSRSGRGGGRMGGRTGGPRGDRGSGGPGGAYGSGRGGNANEDHHEVELWDNTIAQNAEKQQQAHDDAWGDWNNEEYEGSLKDSKVFTTSNLATQSAANVVSGTGASVTAVPAAAGTEISAPPGLEHQLVQQGSHLEESSSSGPAAVTPPATLSGSATTPLLQYSAAVSNPPPQLQSQGTQSGAGTGASAAAGGGAGSTPSSFVSASPDTFSSAASAAATLVHQAQKQQQLQQQTTPIKPSATLSVEQSQYFNSLASQGVSPGSVPVQSAPAGYAQNPVAAYSQTSTSVGVSQYPNTYANVFASGTAAGAGTAEQSQQQPQIRRARVKLPPPSKIPASAVEMPGDNALNNIGYLDVQFGALDFGTDDGFEPLPEKVGSGFSIDGQQQQQQPDDYQSKSQQQQQVTLAAGLQSSQISDALNAAGYTSRSTSQQQQGVSSAVNATIDQLTKSDPYGQTGGSGNAYQNAYQSSGASKTASGFPTTAPGGYSSSTYANVQSSVANSYQQQGYGSYQPSSYQQQAGSGAQSGTGAVSGGGGTATQNIPVGGSSSQNSTSGNASSAYLTSGYSTPQSAYQSSQSVYGNTGLSNSSGFSGSASNASSQYANFSASAKLKDATTASSAAHYDSVSTSSGVSSNSGSTGNGGVVSGQTGANQAAVSNNNSVSGSSSVSNVTAGVASGNVAGVGGGVSQSGVSSGVGVPGGSASSVGVNVNNNSSSASSVGAATVAQTATGTTAAVLASLTNKNTSSSNSSGSGGSAATTTGNASGQGAGASTGGVGSSSGAGGAGSGGGSGSGLVPTNIQMVSQYIQTGLPYYQQPVYSYEELQMMQQRVPHVQGYYDLNYPPASLGAGRDNLGSVTYSAMNDGRFARTDNNSSPVGNVSSTMSQQAGSSAPMLNVPYAYFYGGNVMPGSFQYGTPAIYPQIPAANTASGQQFPKPSYSAGYGSTSYDTLSQTTQDYSKGGYSSSVNQQSKTQTVSNQSQAGTGSDLTSSMYGKGHVALNKVNSYEKQSFHSGTPPPFNMPNTQTAGGTSAQPYGMYLPMPAAGHHNMIHQPIHQVHSELPLQVVVGGGTESHVLIHGNVNGPQVTYHRIWQTEPVQCQNQLVAAHCNNFEPNIDCCVHDNNNDLSFFAD", "sequence_length": 1375, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f881b04e4e3625c18209006033e625f9f10b966980f173b9b08f2dae1851c8c5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q86S05.json", "taxon_id": "7227", "uniprot_accession": "Q86S05", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uba-domain-found-in-ubiquitin-associated-protein-2-ubap-2-like-protein-cd14277.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd14277", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uba-domain-found-in-ubiquitin-associated-protein-2-ubap-2-like-protein-cd14277.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ubiquitin-associated-protein-2-uba-domain-ipr060532.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR060532", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ubiquitin-associated-protein-2-uba-domain-ipr060532.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/uba-ubap2-pf28540.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28540", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/uba-ubap2-pf28540.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ubap2-lig-pf12478.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12478", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ubap2-lig-pf12478.yaml" } ], "pfam_ids": [ "PF12478", "PF28540" ], "protein_name": "Ubiquitin-associated protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMTSVSNDRCRGAREKPQMPTAHAAQSQKQVVQATAEQMRLAQVIFDKNDSDFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINILLEGNSDTTSWETVGGKKKNFGRESSENKENREKRTEREASRGRGTNNRKGRGGNRVREFKGEENGIDCSQGDKPAERGKRARGRGFGRGRGRGTGRFSAQSMGTFNPADYSESMSTDGCGTKLAVWEAAQNGTDEGPEGLAKSHSMSQEPPSKSSYGLKGAWKNSVEEWTTEDWTEDLSETKVFTASSAPAENHVTPGHSIDLVALLHKPAPPTQATEVNSFETSQQQGFGQALVFTNSQHNNQMAPGTANSTSASSYSPQSLSSVLGSGFGELPQSNMVNISNSQILDKLKPPGLSPFPAASSAQQNDTASPPATTAAWDLKPSAPQPSVLSRLDFKSQPEPSPVLSQLSQRQQHQTQAVSVPPPGLESFSSLAKPRESTAGDGPSTVSRLLQLPNMTVENIVSAHQPQPKHIKLPKRRVPPASKVPVSAVEMPGSSDVTGLNVQFGALEFGSEPSLSEFGSAASASENSNQIPISLYPKSLSEPLNASFPMTSAVQSSTYTTSVVTSSTLTSSALSSTSPVTTSSSYDQSSVHTRIAYQSSASPPDSAPGSVANGHGGGRSQHTVDTTSSVPAPKKTDPSALPSVSTLPGPASCTALLPSSAQHTATLPSLTPAAAELSSSPLSQLSSSLSGHQNSMTSAHATRSTSTPHTHASVESTASSAAFSAAATSAPSAPSSGVVLPGSMSTVSSLCLGGTTVSVPSSSTRATALVTSGKAPPNLPQGVPPLLHNQYLVGPGGLLPAYPIYGYDELQMLQSRLPMDYYGIPFAAPTALASRDGNLANNPYSGDVTKFGRGDSASPAPPTTPAQAQQSQSQTHHTAQQPFLNPGLPPGYSYTGLPYYTGVPSAFQYGPTMFVPPTSAKQHGVALSTPPTPFQQASGYGQHAYSTGYDDLTQGTAAGDYTKGGYGGSSQAPNKSTGSGPGKGVSVSSGTGLPDMTGSVYNKTQTFDKQGFHAGTPPPFSLPSALGSTGPLAPAAAPGYAPAPFLHIMPAHQQPHSQLLHHHLQQDAPSGSGQRSQPSSLQPKSQASKPTYGSAPYWTN", "sequence_length": 1132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e2622906dc42c74c4e7d9305c6bb76394ff4a27b2866ff7d1ab5357d8d0c285b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91VX2.json", "taxon_id": "10090", "uniprot_accession": "Q91VX2", "uniprot_release": "2026_03" } ], "pfam_id": "PF12478", "short_name": "UBAP2-Lig", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12479", "short_name": "DUF3698", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 11, "discovery_scanned": true, "example_count": 11, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/golgi-associated-rab2-interactor-protein-like-rab2b-binding-domain-ipr022168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/golgi-associated-rab2-interactor-protein-like-rab2b-binding-domain-ipr022168.yaml" } ], "pfam_ids": [ "PF12480" ], "protein_name": "Golgi-associated RAB2 interactor protein 5A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKGGRDLKAARGGADRPLAPAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVHDESRQQLKVKFRTGRAFYLQLRSPPETRDCEFGRWVRLLYRLRFHSPTCAVPFTHEDTAPEEEEEEEEEEEEEEVKEGQLQPPEFQATEARLDPQVSELWGL", "sequence_length": 212, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b04ed5b868a617232490f813ad4f8902f83ea3859bfc6888bc617c88e5168a7f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A1L3C1.json", "taxon_id": "10090", "uniprot_accession": "A1L3C1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/golgi-associated-rab2-interactor-protein-like-rab2b-binding-domain-ipr022168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/golgi-associated-rab2-interactor-protein-like-rab2b-binding-domain-ipr022168.yaml" } ], "pfam_ids": [ "PF12480" ], "protein_name": "Golgi-associated RAB2 interactor protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMKKNRNKKAMNKQEALFIPHYYRLGHLKNILDGGEYAPYVSPPILESNFIQVNRRGESIYLHNRANWVTVGICSSNPIFKTPNMMLLAHLTPEARKEPEPLFKTLLKSSSSGTLVLTRFIPLQFVTLSVHSAKNMRLKVKLINGRSYYLQLCAPVYKQDIIFSQWVDLIPLLNQEKIKNTKVSEVSSLSELTNSTDIAGSMDITDITAFRELRPRHPKTHRYPCNIMESADFSEYTDVTDVTDVTDVTDMLDNGITDVQDIKIVTEVTEVTEVTEVTEVSEVSDVKMATNISGVKIVFENDDIIKTKQEEKEYTLKHRSLQDTKTKSDYQDSPNPVTMSNIALALQDEGCFQTTQTPVKSKEDIYKEICDETSEENMIRLQNIHLKATESRSTRTDSDISDGELKLGRYLHKQCSSREQSFIHSLGSLPRGFVFLHLLL", "sequence_length": 440, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3e5da5d256ca5c2017d541a6fa5b8d0d6fd8586921ccf04f78d128cc733ad9b7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D3YV92.json", "taxon_id": "10090", "uniprot_accession": "D3YV92", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/golgi-associated-rab2-interactor-protein-like-rab2b-binding-domain-ipr022168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/golgi-associated-rab2-interactor-protein-like-rab2b-binding-domain-ipr022168.yaml" } ], "pfam_ids": [ "PF12480" ], "protein_name": "Golgi-associated RAB2 interactor protein 1B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMTSVPPRKSWWTSKKTVKVIRSYPTFPSLNAWEKFRGLLPVDGETNPGVGLGVEEGLLCQMVHSPEFNLFPNSVVFESNFVQVRRSRNWKEIYKASNTMALGVTSSVPCLPLPNILLMARVKWHQGQSQTWNRPSRAPSINLKSILPLKFVELQIWDDQERVLRLRTVTEKIYYLKLHPDHPETVFHFWIRLVQILHKGLSITTKDPTILVTHCLVPKSLCSPGGKTELVQKKSKGLQPSESLTHLMAQGESETLSQIFSDLHQQKQYRSEKMHINKTSSEKATPCEDSIPCTCDLNWRDAFMFGEWERENPSGPQPLSLLGTLAASSRPRLSLTGGNSI", "sequence_length": 341, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cc5c50a8b999bec111a9ef96e577f691ca7df0bdcdc6b9414dc9f9c69de20cb0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UZD7.json", "taxon_id": "10090", "uniprot_accession": "Q3UZD7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/hush2-complex-go0140286.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140286", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/hush2-complex-go0140286.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tasor-alpha-beta-domain-ipr056243.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056243", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tasor-alpha-beta-domain-ipr056243.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tasor-duf3715-ipr022188.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022188", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tasor-duf3715-ipr022188.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tasor-pin-domain-ipr056242.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056242", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tasor-pin-domain-ipr056242.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pin-tasor-pf24630.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pin-tasor-pf24630.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tasor-alpha-beta-pf23314.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23314", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tasor-alpha-beta-pf23314.yaml" } ], "pfam_ids": [ "PF12480", "PF12509", "PF23314", "PF24630" ], "protein_name": "Protein TASOR 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAPTSKIILELNKNALISPWKGQFIIQGCLLCDITLWSTYGTVVPLQLPRELDFKYVMDVSSLKESLPEAAFRRRSYLEQKVCCQDLCFDLYEVELTNKQGENIDKLMEYVKNKELALIKCLEDKSFFILFTSSALTPEPGFGAEQMGLHGLHLFHAPQTAGAKDLKVEDGISLKVIPILPALSYALLEAKKSLSEEGIPPNILVKHSFQELYKVDKSLSLMAPPQDGVEDTASTGKLSHAFDLPPPLETCPSESLTHLKCYFSDPAGYTLDLSAALDLLAEHPQFPCIADGVCDAGFSLVMTPDPEFLDSEMEIRKTETAEKSGRKLKVKKKAVTPSSNQRVQPKRKASTTAVTLPSKRVSLGRPTSKRTVPRTDNRSCNPTLKLVKGQFPQKRKRGAEVLAAQIVQKTRLERKKQEASVSKDAPVPTNTKRAKKQEKSPGRIASQPKPPMKKSPQKRKVNVARGRRNTRKQLQPAEKEIALHLQSEISSDGQKDGLNLSTSQQESISMIPKGPPENSVISCDSQALNMLADLALSSAAASIPSCKPRNLPCVSDLPRNNVLLTKENPLLGASDHEYHKGVKSQKAVLLPKPYSDEKISSESDLTRSQEENLVPCAQPLPIAQPAPHSEARELSDASQNSVVVEHSYALLLAEQSQKHLHQRKLPSPAFVKNGIKGPEAGTPVGKVMPFRHLQNTSPLQKHSEDSLMKHKSLFVSSTLKEFFCSHTVLKCDGSFKITFKCEGEYVFSLDSKYTSNPLEKTVLRALHGPWNTDLPENVDDVKLLLHIWVALFYSKNNKVIGSPRKVVEHKNPAKYVCINRSLESLDHSEIEAFSNVERPSVEGSVDPLLETKETHIGHATNMTFPGPNRVLPFINPPTTRDLELCVQNDQKEVFTGECHLDTSGNQNFIYSCNTEVTGGKTKQELSNKLETSNVVLSGVVSAQSHGTCIPSEDKTCQSTKMVSYNDSVTQATLTTAYDEASSELMCQKSVFDNLENKVDSFHPSPLIKTDAVQDVIQHSSHINNECQPSVEKREDNVECMMVNLDPVTLAFEKNASVPIHTEVHTTDKPTGFNIELVKRVSPASSVQYPMSALEEVQTQSSRDVPSLAMSEYKDSKCLSASSVKKETPPESLCLLQKEIPPLTSSADEGLIMEALSLVKSSSYSLASDKTKCPQDDSLQTQNGLSMSLDEVLEPSKVNVVSSTSVTLREQPSPNCIPAMSDVAGASTVIMNSGSSSLNQEKILQTFSLVFPKQTDLSLKREEVSMELSGEEADINLTLTISPPTSPSEEIAAGEIEQFQKTPVSNVGQQSRSEEMVEPEEEERLIRNREINSASCMSVYPVESRELLKNCTPEVTEKVNVTLDFPFGPLIEVSPASSPDPIVQPGDRPSSPCCLKLHSSQSEKTNKFSQIKSGEVTIPEKESLFLGPESPKGQDKLAEVQVQISAEMLQITTNAEVEGRVNMPGKVTKVSVPSEHSENLSFLEKVQCNTELNELSLPAKYGGNFKPLEKSGNSLEAGCMENRNVDVKHLALESSVPSCSPRKVVENKSLTDTLVSITTSGIVNMSLKQTSSKNIKKNVCDSDVKTDSDVKTEADSNMQTEAVNSALIDKTDVQAYSHPEVSKFVSSSDSAQCTYHAKPVSVEPGFQTQEIPVVRMASLLKNIGVELHEEKMDLSATGLQSNSMSAKDEQKTMHVLQDTICEVKEFLNGDVFSQNAHSCQNTVDFSKSISEEPSASFVPEFVDAICGVYKEHTFNESPNMVHETKADAETLSRNTEISVNASMFCGPRSGAYVQDSHDCKSCKFDVENLRGNHESQKDAVKDSCDSFTSLNNSDDTWACSSKISTLETHIPPRDQETEPRLISPNKCIPRYIQIPDSHGIPKTYANFTITKEFKDTTRRLHSLKRHRNLSANCNLLSSWTSTWHVTDDLTQHTLDLEYLRFDHKLKQIKKGGSQQSSFPKESLVQISSGTSPSTQTSEASGLHLPPESRSPILVTVVRADTRQQSHHRRGCSPSSLDGSSSFWKKKCSQSRNLKNSERSQTVPFHLNKLKYNSTLKESRNDISLILNEYAEFNKIMMNSKQIVSQDEELNVASAEAVFQEAYQPRQPVSYEDVITDLCATLHVKLKGVVREACKSPFWFYLVETEDKSFLLRTKSILKKGGHIEIELLDFCQAFHRENETLLVIIKNEDIISHLHQIPSLLKLKHFPSVVFAGVDSPEDIVNETYQELFRSGGFVVSDDVILESLTLVQLKEILKILEKLNENGKWKWLLHYRESKNLKEDVRVDSIAHKKNLILKSYQSVNIIDLLHYHNCDSPSSTKAEIFKCLLNLQIQHISARFAVFLTDKPTVSTEIFENNGILVTDVNYFTENIQKIAAPFRSSYW", "sequence_length": 2382, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4302025906486fb1f20932ec54070f7746edbb56a0077f106ec376856372af2f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5DTT3.json", "taxon_id": "10090", "uniprot_accession": "Q5DTT3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/golgi-associated-rab2-interactor-protein-like-rab2b-binding-domain-ipr022168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/golgi-associated-rab2-interactor-protein-like-rab2b-binding-domain-ipr022168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/garil-rab2-bd-pf12480.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/garil-rab2-bd-pf12480.yaml" } ], "pfam_ids": [ "PF12480" ], "protein_name": "Golgi-associated RAB2B interactor protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGMKRTMSSECLLPYYTAHSYRSMGVFNTSMGNLQRQLYKGGEYDIFKYAPMFESDFIQISKRGEVIDVHNRVRMVTVCIASTSPVLPLPDVMLLARPAKVCEEHARRARFIKGKGCKPSKTLELTRLLPLKFVKISVHDHEKQQLRLKLATGRTFYLQLCPSSDAREDLFCYWEKLVYLLRPPMTNCISNSTLPTGETSVDTKSTLVSEIRGEGDQNSRPQSSPTVSEATSAAFAGGERTQPAAAAAVTPVSAKARAAGTAGAAAGTAGAAAGTAGPAAGPAAGTAGPAAGTAGAAAGTAGAAAGTAGATAGTAGATAGMAGATAGTAAETAGTAAETAGAARAAGGPMAAAVAAPSAGMTKAETATSPTSGVISLAATTTKPPGSGQVAAAMIGSAAKDQVGGESSKAMALAANITLENVDVALAGAANSISESPPAGGDASGSPDTGLNVAFAGSIKTKSPAEDKPEAPLVSTLQSEGYMCERDGSQKVSQTSSEAKEKRERREKDRTSSRKSSHHRRTGMSRHSSKDKSRKTSSYRSVSGKTREDKGKGHGRLRGKRHSSSHKSESRTGHKTRKNRSPAGLGSVSKRATKITSFFRSFLVRPTPKAGDTSCDRGGVDIVTKLVEKKQDIEAVMEKSKDSEFKDTVISETMEKIILETKSI", "sequence_length": 665, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "73b4a4798f599a9b37c5be3c59502b0916d0db28a579b5e1fa1e82446e673909", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q5STT6.json", "taxon_id": "10090", "uniprot_accession": "Q5STT6", "uniprot_release": "2026_03" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tasor-alpha-beta-domain-ipr056243.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tasor-duf3715-ipr022188.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022188", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tasor-duf3715-ipr022188.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tasor-pin-domain-ipr056242.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056242", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tasor-pin-domain-ipr056242.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/garil-rab2-bd-pf12480.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/garil-rab2-bd-pf12480.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pin-tasor-pf24630.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pin-tasor-pf24630.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tasor-alpha-beta-pf23314.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23314", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tasor-alpha-beta-pf23314.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3715-pf12509.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12509", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3715-pf12509.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5VWN6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12480", "PF12509", "PF23314", "PF24630" ], "protein_name": "Protein TASOR 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f499e9b51c5b896ff75163f810f5f0555cef1f0ce6380b483ed27710b2615b5f", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAPPAHKSILERSENVLMSPWKGKLIVQDRMLCDIALWSTYGAMIPTQLPQELDFKYVMKVSSLKKRLPEAAFRKQNYLEEKVCFQDLCFNLYEVELSNRQGENIDKLTECIKNKQLAIIKCLEDRGFFILLTSSALLSEPDFGGKQMGLHGLHLFRSPLSTGVKDLKVEDDISMKVIPILSTLNCALLETKKSLPEERIHPNTLVKRHFQELYKADRSPSLSVAPQDRMKDPTFLGKLPSGFDLIPPAEKCPSESLTQLNSYFSDPSAYILEVSTALDLLAEHPQSPCVSDGICDAGFSLVMTPDPEFLVSEAEVRKETETKKDSEEMLKAKKRVFPLSPASNLRVQPKRKASMPHMVQSKKVNLCRPFPKRTASRADNSSDSPTTLKLVKGQFPQKRKRGAEVLTAQFVQKTKLDRKNQEAPISKDVPVPTNAKRARKQEKSPVKTVPRAKPPVKKSPQKQRVNIVKGNENPRNRKQLQPVKGETASKLQSEISRGCQEDGISINSVQPENTTAAHNDLPENSIVNYDSQALNMLADLALSSATSSTPVSEARNLHCSSELPQNDVLLSKENSLRGTSDHEYHRGVKTQKGELLPNPSSDRKSNSGSDLTVSQDEESLVPCSQAPAKAQSALTEEMLESSDASQSSSVSVEHSYALLLTEHSKKHLQEREILSPLFPRNGTKSPEAATPVGKVMPFRHQPGLLLQQKPPDDPVVKPKDRPPSARVKKSSCSRIVLSCDDSVKITFKCETEYAFSLDSKYTNNPLEKTVVRALHGPWNTDLPDNVEEVKLLLHMWVALFYSNQNKIIRSSRKVVEHSNPAKYVSINSTLESCELREIEESLGLEKCSADSLLETNEISRAHAAEVSFRDPNCLLPFIKTPLTQGLELCVQNEQKKTFARECDPDTQEDQNFICSYNNEVTGEEAKQESLETSNLVLSGIGSTQTNGPSVPSEEEIVQPLDSTRVASYSGTVTQATFTRTYDGPGSQPVICQSSVYGTLENKVDILDAAVQTKTGTLQDLIQHGSPINNECHPSLERKDDNMGCAVINPEPITLTFEKNAHVPIQTEGVNTADERTTFKKELIKQVSPAASLRHPVSTSENARTQGLRDIPSLVVAGQKGTKYLCASSVGGETLDKAVCSLQKETPLPVSLPSDKTMVMEALSLAKSSSHLSPSEEVRCTQDFLSQTQSLLGLSSEGLLELTQVEVDSSSASTTLGRQCSLNCISSGCHTSGDSLELRKNHKNGPNTENMNLEAFDSVFIKQTSLSVSREVSLELSEEDSDIDLALTISPPTSPREEMPAGEIEQFEEAPFSNLELQDVAEEIGEPEEVALTESREVSSADNVSVYPSVSEEPVENKERKGDNLQPVTLILSKENCTLEIAEEINVTSDFPFDSVIEEVSPASSPEPPVPVKETRPYQAVTPCILKLHGTQCEKSNQISQCESEDLGITEKENVFVGPTHPVGQDNFTQVQQMQVSAEMPLILTDHPGRTGRPTLPGKVTEEIVSSEHDEGLSFSGKVQCYGRELNQPASAAKCTGDFSPSPEKLVKSGNPLQPVSIENRNLDLKHLVLESSEPPFGPRNVIENKSLSDTLVSTTAPSGIVNVSVKQQTSPKSSQNHLFPGDLKTDEGIYLQVKSLTAASVDGAYSTQGCMCSVVPTLCSSSDNATLTHYVRPINAEPVFQAQEIPAGRMASLLKNGEPEAELHKETTGPGTAGPQSNTTSSLKGERKAIHTLQDVSTCETKELLNVGVSSLCAGPYQNTADTKENLSKEPLASFVSESFDTSVCGIATEHVEIENSGEGLRAEAGSETLGRDGEVGVNSDMHYELSGDSDLDLLGDCRNPRLDLEDSYTLRGSYTRKKDVPTDGYESSLNFHNNNQEDWGCSSWVPGMETSLPPGHWTAAVKKEEKCVPPYVQIRDLHGILRTYANFSITKELKDTMRTSHGLRRHPSFSANCGLPSSWTSTWQVADDLTQNTLDLEYLRFAHKLKQTIKNGDSQHSASSANVFPKESPTQISIGAFPSTKISEAPFLHPAPRSRSPLLVTVVESDPRPQGQPRRGYTASSLDSSSSWRERCSHNRDLRNSQRNHTVSFHLNKLKYNSTVKESRNDISLILNEYAEFNKVMKNSNQFIFQDKELNDVSGEATAQEMYLPFPGRSASYEDIIIDVCTNLHVKLRSVVKEACKSTFLFYLVETEDKSFFVRTKNLLRKGGHTEIEPQHFCQAFHRENDTLIIIIRNEDISSHLHQIPSLLKLKHFPSVIFAGVDSPGDVLDHTYQELFRAGGFVISDDKILEAVTLVQLKEIIKILEKLNGNGRWKWLLHYRENKKLKEDERVDSTAHKKNIMLKSFQSANIIELLHYHQCDSRSSTKAEILKCLLNLQIQHIDARFAVLLTDKPTIPREVFENSGILVTDVNNFIENIEKIAAPFRSSYW", "sequence_length": 2430, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f499e9b51c5b896ff75163f810f5f0555cef1f0ce6380b483ed27710b2615b5f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VWN6.json", "taxon_id": "9606", "uniprot_accession": "Q5VWN6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/golgi-associated-rab2-interactor-protein-like-rab2b-binding-domain-ipr022168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/golgi-associated-rab2-interactor-protein-like-rab2b-binding-domain-ipr022168.yaml" } ], "pfam_ids": [ "PF12480" ], "protein_name": "Golgi-associated RAB2 interactor protein 5A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGPPLWPDLQEPPPPGTSSQIRSPLLCDVIKPAPHHDVTVRVVPPPRFLPLLLRPLPSDGDIAMRRDRGPKPALGGAGEVEPGGMAASPTGRPRRLQRYLQSGEFDQFRDFPIFESNFVQFCPDIYPAPTSDLWPQVTRLGEVANEVTMGVAASSPALELPDLLLLAGPAKENGHLQLFGLFPLKFVQLFVHDKSRCQLEVKLNTSRTFYLQLRAPLKTRDREFGQWVRLLYRLRFLSASAVPFTQE", "sequence_length": 247, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2e32c69981ef253cd4417bd23e28ff00029cc216453607cbcb429b7e3b43700a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6IPT2.json", "taxon_id": "9606", "uniprot_accession": "Q6IPT2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/golgi-associated-rab2-interactor-protein-like-rab2b-binding-domain-ipr022168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/golgi-associated-rab2-interactor-protein-like-rab2b-binding-domain-ipr022168.yaml" } ], "pfam_ids": [ "PF12480" ], "protein_name": "Golgi-associated RAB2 interactor protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNADFLLPYYTAQSGSSMSMFNTTMGKLQRQLYKGEYDIFKYAPIFESDFIQITKRGEVIDVHNRVRMVTMGIARTSPILPLPDVMLLARPATGCEEYAGHGQATKRKKRKAAKNLELTRLLPLRFVRISVQDHEKQQLRLKFATGRSCYLQLCPALDTRDDLFAYWEKLIYLLRPPMESNSSTCGIPAEDMMWMPVFQEDRRSLGAVNLQGKGDQDQVSIQSLHMVSEVCGATSAAYAGGEGLQNDFNKPTNVLNASIPKTSTELAEEPATGGIKEAAAAGAAAGAATGTVAGALSVAAANSAPGQVSAAIAGAATIGAGGNKGNMALAGTASMAPNSTKVAVAGAAGKSSEHVSSASMSLSREGSVSLAIAGVVLTSRTAAEADMDAAAGPPVSTRQSKSSLSGQHGRERTQASAEGCKEGRERREKDRALGRSSHRRRTGESRHKTRGDKIAQKSSSRSSFSHRANRDDKKEKGCGNPGSSRHRDSHKGVSHTPISKESRTSHKSGRSLWTTSSGSSKGLGRVSSFLRNVRANLTTKVVGTPHGRDVNVMAKMAERSTNVAIAETAEGGQGLETVGSMTPDIMETVTFEAH", "sequence_length": 594, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bb63af9be81b98a9a988e5376b2cbc82fcaaec5ee38dba7a6ef351c9d5b74636", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IYT1.json", "taxon_id": "9606", "uniprot_accession": "Q8IYT1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/garil-rab2-bd-pf12480.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/garil-rab2-bd-pf12480.yaml" } ], "pfam_ids": [ "PF12480" ], "protein_name": "Golgi-associated RAB2 interactor protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDCCMLPYYTAQSSPAMGMFNTSMGKLQRQLYKGEYTIFRYAPMFESDFIQISKRGEVIDVHNRARMVTMGIVRTSPCLTLPDVMLLARPAAVCDNARCGPATQKRESPPAEILELTRLLPLMFVKITIHNSVKKQLHLKLATGRSFYLQLCPPSDASEDLFVHWENLVYILRPPVEAYSDTRAILAGNTLDSSVLEEVQRSPVGYAMKFCEEKEQFRISRLHMNAEMFGSTYCDYTIEI", "sequence_length": 241, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "af63ab6525a2ccf4138d0cc5cd49db21c85e7941044673f49c035d699e45a3b9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NEG0.json", "taxon_id": "9606", "uniprot_accession": "Q8NEG0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/golgi-associated-rab2-interactor-protein-like-rab2b-binding-domain-ipr022168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/golgi-associated-rab2-interactor-protein-like-rab2b-binding-domain-ipr022168.yaml" } ], "pfam_ids": [ "PF12480" ], "protein_name": "Golgi-associated RAB2 interactor protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNESCLPYYTAHSYSSMSAFKTSMGDLQRQLYNRGEYNIFKYAPMFESNFIQINKKGEVIDVHNRVRMVTVGIVCTSPILPLPDVMVLAQPTKICEQHVRWGRFAKGRGRRPVKTLELTRLLPLKFVKISIHDHEKQQLRLKLATGRTFYLQLCPSSDTREDLFCYWEKLVYLLRPPVESYCSTPTLLSGDAPPEDNKSLVAAELHREGDQSETGLYKPCDVSAATSSAYAGGEGIQHASHGTASAASPSTSTPGAAEGGAARTAGGMAVAGTATGPRTDVAIAGAAMSPATGAMSIATTKSAGPGQVTTALAGAAIKNPGENESSKSMAGAANISSEGISLALVGAASTSLEGTSTSMAGAASLSQDSSLSAAFAGSITTSKCAAERTEGPAVGPLISTLQSEGYMSERDGSQKVSQPSAEVWNENKERREKKDRHPSRKSSHHRKAGESHRRRAGDKNQKASSHRSASGHKNTRDDKKEKGYSNVRGKRHGSSRKSSTHSSTKKESRTTQELGKNQSASSTGALQKKASKISSFLRSLRATPGSKTRVTSHDREVDIVAKMVEKQNIEAKVEKAQGGQELEMISGTMTSEKTEMIVFETKSI", "sequence_length": 605, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "68555ef28b9d8586803e58f48dbb82e71a89129602bd70e1a9939845a3224c6b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TC56.json", "taxon_id": "9606", "uniprot_accession": "Q8TC56", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/golgi-associated-rab2-interactor-protein-like-rab2b-binding-domain-ipr022168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/golgi-associated-rab2-interactor-protein-like-rab2b-binding-domain-ipr022168.yaml" } ], "pfam_ids": [ "PF12480" ], "protein_name": "Golgi-associated RAB2 interactor protein 1B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSSFPHRKTWRKSKKTVKVTRSYPTFPSLNAWEEFRGLLPVDGEPNPGAGLGVEEGLLCRVVHSPEFNLFLDSVVFESNFIQVKRGRNWRDVYKASNTMALGVTSSVPCLPLPNILLMASVKWHQGQNQTWNRPSIAPNIFLKRILPLRFVELQVCDHYQRILQLRTVTEKIYYLKLHPDHPETVFHFWIRLVQILQKGLSITTKDPRILVTHCLVPKNCSSPSGDSKLVQKKLQASQPSESLIQLMTKGESEALSQIFADLHQQNQLSFRSSRKVETNKNSSGKDSSREDSIPCTCDLRWRASFTYGEWERENPSGLQPLSLLSTLAASTGPQLAPPIGNSI", "sequence_length": 344, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a0c40f83050cb8a40a2b8e58bfe1305c6f87541cb7466d9cce659316c6b89d9c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96KD3.json", "taxon_id": "9606", "uniprot_accession": "Q96KD3", "uniprot_release": "2026_03" } ], "pfam_id": "PF12480", "short_name": "GARIL_Rab2_bd", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Nicotiana tabacum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3700-pf12481.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12481", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3700-pf12481.yaml" } ], "pfam_ids": [ "PF12481" ], "protein_name": "Stem-specific protein TSJT1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLAR", "sequence_length": 149, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "06a6e78ddbfe85f1001f8d730f4659419c8ceb9339ad6d4262a82bb81d22ad1b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P24805.json", "taxon_id": "4097", "uniprot_accession": "P24805", "uniprot_release": "2026_03" } ], "pfam_id": "PF12481", "short_name": "DUF3700", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12482", "short_name": "DUF3701", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12486", "short_name": "VasL", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12487", "short_name": "DUF3703", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12488", "short_name": "DUF3704", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12493", "short_name": "DUF3709", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3695-pf12494.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12494", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3695-pf12494.yaml" } ], "pfam_ids": [ "PF12494" ], "protein_name": "Cilia- and flagella-associated protein 276", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLTRDPFQNPALDKDDSYLGKSRASKKLPYKNPTHLAQQQEPWCRLSSTPTITSMKRDGFFFYSEIPKDDLDFRLAALYNHHTGTFKNKSEILTHQETIQDTRRIKTQFPGEFLPAPQPPLITSRANIRHWINPKKESIHSIQGSIVSPHTAATNGGYSRKNDGGFFST", "sequence_length": 170, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "294067143558f3aab932cd56ce842fc554b1430e31e9e37b93bbf6047e1a30f1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E1B9I5.json", "taxon_id": "9913", "uniprot_accession": "E1B9I5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3695-pf12494.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12494", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3695-pf12494.yaml" } ], "pfam_ids": [ "PF12494" ], "protein_name": "Cilia- and flagella-associated protein 276", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPTRDPFQQPTLDNDDSYLGELRASKKLPYKNPTHLAQQQEPWSRLNSTPTITSMRRDAYYFDPEIPKDDLDFRLAALYNHHTGTFKNKSEILLNQKTTQDTYRTKIQFPGEFLTPPTPPITFLANIRHWINPKKESIHSIQGSIVSPHTAATNGGYSRKKDGGFFST", "sequence_length": 169, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b88c20565bf1d8b02441734d5ec764017259164eb3743027b05b437da2c0ebae", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T5A4.json", "taxon_id": "9606", "uniprot_accession": "Q5T5A4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3695-pf12494.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12494", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3695-pf12494.yaml" } ], "pfam_ids": [ "PF12494" ], "protein_name": "Cilia- and flagella-associated protein 276", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQPQETFSNPALRDEDKHLGNLWASKKSLYKNPAHLAQQQDPWSRLSSTPTATSRSRDTFFDSKIPKDDLDFRLATLYNHHTGAFKNKTEILLHQETIEDIQGTKIQFPGECFHAPSAPITSRTTIRHWINPKKESIHSIQGSIVSPHTAATNGGYSRKNDGGFFST", "sequence_length": 168, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "49cabca9673489a78e436c696adc880b391d60739ae0b2915fdc4dd5d529e3ca", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DAD0.json", "taxon_id": "10090", "uniprot_accession": "Q9DAD0", "uniprot_release": "2026_03" } ], "pfam_id": "PF12494", "short_name": "DUF3695", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Volvox carteri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3707-pf12499.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12499", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3707-pf12499.yaml" } ], "pfam_ids": [ "PF12499" ], "protein_name": "Sulfated surface glycoprotein 185", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKLLLVALFGAIAVVATSAEVLNLNGRSLLNNDDPNAFPYCKCTYRQRRSPYRLKYVGAENNYKGNDWLCYSIVLDTTGTVCQTVPLTEPCCSADLYKIEFDVKPSCKGTVTRAMVFKGIDRTVGGVRVLESISTVGIDDVTGVPGAAILRIVKDLALPYSVVASFLPNGLPVCINRVPGSCTFPELFMDVNGTASYSVFNSDKDCCPTGLSGPNVNPIGPAPNNSPLPPSPQPTASSRPPSPPPSPRPPSPPPPSPSPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPSPSPPRKPPSPSPPVPPPPSPPSVLPAATGFPFCECVSRSPSSYPWRVTVANVSAVTISGGAGERVCLKISVDNAAAATCNNGLGGCCSDGLEKVELFANGKCKGSILPFTLSNTAEIRSSFSWDSTRPVLKFTRLGLTYAQGVAGGSLCFNIKGAGCTKFADLCPGRGCTVAVFNNPDNTCCPRVGTIA", "sequence_length": 485, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d6e01b87da863d3eb19374b8b02011507b5328f3860fe63b60f895031249f534", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P21997.json", "taxon_id": "3067", "uniprot_accession": "P21997", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Volvox carteri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3707-pf12499.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12499", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3707-pf12499.yaml" } ], "pfam_ids": [ "PF12499" ], "protein_name": "Perphorin-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMRKALLALCVATAFAVAQAQNVAYPNFPYCQCIKSPSPYSLEPVVKSNRTGQYCFTLRVTKPSPSATGYCATKADIKKIEINVNQVCDVFGNVVNATLNGVPTKVGPAFDTPPDGPNTSRILRFTQLNLGLDSDGAMLCITLGQNDKGKGCTTLEDLCAPPAGAPKGTCSLALFDSKPDCCPISRVSPPAPPPPPPPPPPEPVAVPITPPCKTCVYATITALPPLLFPFQLTPSICQSVADKIAGDLEMIVTSYSIGYSGATITCSGNVIKVCASFSLPPGAPYTGLQADISNALTFWLSLLAPSTGCPAYFANHQVTVTVGGDGDPNSVTCLEGTATTTCKPGNPDFPKCECETKPAATRFAALPTLTQEPGRPSNRTNSTLYCFTLQVVAPLNPNGLCGNTTTLLKAELWGNDIPTQRRKILALAFKAAGASSPLRYLSPSWGSAGEQTLKVSGLNWDASQADGAKICMELSNDTNLKTFCNTGQDTCWINLFSPDKQCCPLFAASLTP", "sequence_length": 512, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "94be243a6496f2434ef052483de1a989b04c97e9d27f3f8395777b388c54cda8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P81131.json", "taxon_id": "3067", "uniprot_accession": "P81131", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Volvox carteri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3707-pf12499.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12499", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3707-pf12499.yaml" } ], "pfam_ids": [ "PF12499" ], "protein_name": "Perphorin-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "AVTPGSIPNFPFRDCNTTNGAYRLAPVWRPSGSNTYCFKIQVSQDALSCTGACCSADLHKIEFNVCSSCLVAGASVDATVNGVRTRVGATLDKAPAGPVGSAVLRLTQLGLDTTTAQDAEVCLTLKTNRGGQGCTTLDQLCSSPGFPAGTCTAAMFDVACDCCPVSQAGQALPPPPPVIPPVLRPCDVCIAATIVPPANDVRPYRYDSATCAAIQQNIANAMNSLLGGANINVFSPFAPNASQCFDTQIITCGRFNGSDTDALANLTEAVQQQLSAFIGVASGGNVCNPKLEKYTVTVSTINNVADQCLDLSQSASCFLPGVPFPNCTCNTTQGVMPFTVSPTWYAQPANVRWGRNVTEYCFTVNTLQPSQVVPSTCYNANDALAKIEWYASDAFRSAVKGFTVYPAGGSNKTIADSWGATGTDTLKVNLNWNLLQANGGKVCVAIQNPFTMGDICKGALGQCYASIFNRDNSDYCCPIYRTGP", "sequence_length": 484, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "06d964b6fe4e211ca6933d7fe17bba658f6cb780ae49bd829e61a7754438ff22", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P81132.json", "taxon_id": "3067", "uniprot_accession": "P81132", "uniprot_release": "2026_03" } ], "pfam_id": "PF12499", "short_name": "DUF3707", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12500", "short_name": "TRSP", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12501", "short_name": "DUF3708", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12502", "short_name": "DUF3710", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12505", "short_name": "DUF3712", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3713-pf12506.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12506", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3713-pf12506.yaml" } ], "pfam_ids": [ "PF12506" ], "protein_name": "Uncharacterized lipoprotein MG309", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRFLHRVKWPLLLSSIAVSLGIVAVACAQPNSRTIENLFRPSSAFTDKNDGSINATLYKALENREGLTQYLTMRLAPVLRNFYEENVDDDIKRNLRTFNTDTDNSFVNQEQNLRNQYRGDYLVRLQTDILDNTGGNQANWKLRDVNNKIVDDFINKLFTKNFVEYVDKSVGVLSTPLKGLIENQSNWNNIKIQAKFVDKNKRLRINNDAVYAAIQDKLLDQFVTNENPNLVSRVVFTNETPNDGFDNYFNPDLIKSPTPSYQFQVFNKYNQQDNSIKGANGFHILASNLQSYVNTNNKTIDIPNKFSSDSGGKLLLKASDMFDTFDPSFSAAFIQGYLALQKKSKGAEQTEYTKLEKDKSIIENFFVENNSAKAAMKSASSSSQTTTVHKTDLAKIFKENETTKSTDVFKGEYQKKFSNATSTSNSDSSNNSAIVDLKELKKDNNSQPDLILARGKDGIHLMGVDGGGYYLSESGRDVNKQKQFLLFRALQTKYGLIDTNTTYDFKLFDEVKKHFDKNRVLFLFNALFKLVDSKESNFLSFPQFKKFSDSIITVKNELKDLVESQYQQIVFNEVATAENKVALKLAERNQPFIDNERNKQIWMNGLAAVLPYEQDSKTGHYNELGIYYKDIIDKVSSNTSNSNSNSNSSSSDPFSKKIIDKLKENKKKVEAAVKKHVDELKVSVIPSPQYSQIILVDTKLSSDPRNTSLALNLALNAVLSSDELQNTIRRDYFVNDDQFKQAIDLDKLTFKNWNSLNNENWNIFKYTYLFDLFQKQANPSIFGNGVNESSTDNKPKINGVLDSLYNSLNLEERLDSNDLINYYSYLYTVQWLLKDNLKNLKQNLQAKLSRTTNSFLVWSLASDKDRNNTASQAMSVSSSKSVLVKMANNVASQTNQDFTKQEQQNPNYVFGSSAYNWTNNKTPTVNSAANDISSLYYTKNNGSSSTSLTLMQKSAQQTNNQQRRFGFHGIVTNTSSNNLPDAVRNRLFTSFVSQSEKSSSNGGQAQLQSTQSSGSNETIYKGALFSFGSLTKLIETIDNIPTQAEFDALYNHLTSNLNINVTGVDRSKSLQEQKTNLKNFANSNFNNTQTVQLKQAQSKTNNSNFNDVFSRFEGYIGTNKTSNYSSYNFLQDNQIYHAVYAKQINLEDVSMLGSDSLNSTDSNNSKRLDLSLEEFLSTVALEALNPNNQTQAINALIANAKNGLVRVGDNRLFSAISSQWVRKF", "sequence_length": 1225, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dd0a9081454c96fd4ae7c73a22155259ba6ae72e397c1cd3da29d2b5dbd580c0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P47551.json", "taxon_id": "243273", "uniprot_accession": "P47551", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3713-pf12506.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12506", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3713-pf12506.yaml" } ], "pfam_ids": [ "PF12506" ], "protein_name": "Uncharacterized lipoprotein MG338", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAHRFKRWSLIALAFSGVGATAIITACSTINTANLFPTLNRSQKLIGFSDQNIINPDVVLKSALNDGSGVDSILRVSFGSALQKWYQANADRNISNRLKIFEENVEDEHDNLIDEKKRADRVKWPIEVQKEYDQFGGNQESWKKLKLYDRLITDFQSLIFNNISANVSLVNSSDTSVATTKENIEKTENKLKFINSNLNDVNGDFFTNLQAYLFSQWLIEENPFLLNQASFNYQSPIAGLGSIYDENAIGASNLNLSYNFPAFQDPSESGGQTNSAKLFEEFDKQLQTANSSGSSQSSAATNTRNDLLDFENKYSASKVLISKNNILSVLKTVNLSAAVIDQYHYLLNNKTELTTTTTTTTTTGGTSSNLNPLDKFIKSSSATTVMMKSAMTKSQEVTSDNNGFNVKSEFLKINPSLSSSGSDNSSNTQSFWKQVQALNNSSQTATIFDAVRMESNSSQAQVVTSNLLVSLSSKTTQKQQQKPVYVRGDDAIYAFHIDGGNYFLENSSPNKRNFEKQAEVLLMRFLQGQTNNFSKDNVSFSVDLFGSNSEFRSWANRNTTLKLYTALTTMLENGTSNNNGQKDVCDLAKKLLKNNTNLSETIKKQQDFNNSLSQIKSSYESYIKAANKLNNFRTDLANIEKLEQAIVDRANNYIKLQKEAKESSIGWGQPLPYKRANDGSYPSLAKFFNNNSDQSSAQTLTLKTTAAAITSDNEPTREKNNQTLKTLTTEVENKAKELVEKWKATTYSSSQYSEIITLKSSQLNDLDLDLILSLLTDSGIRTGTVANIFKNWYFKNTNSFTNNFDTSNKELKGEFSDFNDLVKQALYIRSWQNLTSKERFGYYKDLGSVNSTSTMLQMQNKAAQSHTSSSVNQTLLDLAKKAFEKELEDPNQDAEYKYMRFLQALMWLVKNGAQNYKNLLQQAIPIGTRAFVSWTVGYDKNPSATVSQKTKSSTSSANENPFNRFLQNPNYTQGSEINWFNDKQTPIQPDSLLESENTYRFTDEPFNNSVALSNKSQGSSDKKYFYGFNGLTINSNQSISTASAGLTQQLFNNYGQLITATDKAGALSQYKDKFTLWSLINKTSSDAELNAFGELLHRSVNVDTNNLSRFNSRGEPLISFDNKKKFLLNVVDRLDDLYFHKFEGYVGLSKAANTDGSNTEGYKTVQTVPLTNDSSIQTLSYVIQITNDDVNKISSNWKNNKANSLGLKKEIFMSLLIEQALDEGTQELAFLDLIRENQKQHQREHQQILVGDKRLYDILGQTLAINAKNF", "sequence_length": 1270, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bce76501fd1c8cd26e94b61a8daecad1bfb17bb118bc07ea77b849db3fbe45c9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P47580.json", "taxon_id": "243273", "uniprot_accession": "P47580", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3713-pf12506.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12506", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3713-pf12506.yaml" } ], "pfam_ids": [ "PF12506" ], "protein_name": "Uncharacterized lipoprotein MG309 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHTFTRKVKWPFMFTAIGLTFGIVAVACAQPTASTVEGLFKPSSAFADRTDFSLSSILQKSLINRESFNQYLAMRLAPVLRTFYEDNYDTDIKERLNGFTADTDNAFVSQEQNLRNQFRENYLVHLQTDIFDNTGGNQAAWKLRDVNNKIIDDFISRIFAKNFVEYVQDGVGPLTKPTKSLIENTSNFKNIKLQPKFVNKNAKLKINNDAVYAAIQDKLLDQFITNENPNLVSRVVFTNETPVDGFDNYFNTKVIQSPTPSYQFQVFNKYNQQSGGTKGANGFNLLASNLKSYKNDQSKGIDIPNKFSSDSGGKLLLKASDMFDTFDPSFSAAFIQGYLALQKKSKGADSKEVDSLIKDKSIIENFFVDNNTQAAAAARAASSSSEGTIQLKTASDGGGTTQSTVHKTDLVKIFGDKDVFAGEYKQQIGNTNANQTGGGGSGGGGGTSTGSSTGSSTETTTGNSSKAVVDLIEVKKDSSSQPDYILSRGKDGIHLMAVDGGSHYLTESGRDVAKQKKFLLFRALQTKYGLVDTDTTYDFKLFDEVKKYFDTNRILFLFEALLDLSSDTNNKDNFLSYPQFKKFADSIKSIEKDLKELVQAHYKQAVFNETAVAENKVTLKLAERNQPFIDNERNNQIEQNGLAAKLPYEQDAKTGHYNDLGNYYKDIIDNVDKKGTSTVKTTSSNTGQTKNFSEEVVSKLKDNKKKVEEAAKKHVEALKVFTIPSPLYSQVILVQTKLSFTPESTSLGLNLALNNYLTSTELQNSIKLSYFQEDEAFKKIIDITNLTFSQQSGGTGGTNGNNNLTADNWKIFKETYLLDLFESQAQKSIFGHVGSSDKNSSTKTGIEGVLDTLYSSLNLEERLDSDDVIDYLSYLYTAHWLLKDNLKNYKQSLQSKLSRTSNAFLVWSVDSEKNKNDSQSTLSSTASSTSNTGLIQLRSVVSLAQNQAAGQGGDNNSDITQTEVKNPNFVFGSSVYDWTNSKTPEVNRAADDTSSFFYTKSSSSSTGAAQSSATVLRSLNQASGMTTKTAKNRYGFRGIVTSSTSGSLPEAVSRRLFKQFVNQTEKGVKVGGQMLITTAKSGKATLVLKQQADDAESTTNNAYKGALFSFGSMDNLKNIINGIQTQTEFDALYNHLTSDLNIDVTGVDKNKTLTEQKTSLTSFVDSNFKQSTQSAQRGDTSARSARSATVQIKKTQEDNQNTNYKDVFSRFDGYIGDNKVEEKNYTSYQFLSDGGKYHATFVKQVNLDDVEKIGTDSLKQEDSSKDKRLNLSLEEFLAAIALEALDPNNQTQAINALISGNKKGLVKVGDFRIFSSISAQWVRRF", 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"data/traits/function/localization/go/hush2-complex-go0140286.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140286", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/hush2-complex-go0140286.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tasor-alpha-beta-domain-ipr056243.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056243", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tasor-alpha-beta-domain-ipr056243.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tasor-duf3715-ipr022188.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022188", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tasor-duf3715-ipr022188.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tasor-pin-domain-ipr056242.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056242", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tasor-pin-domain-ipr056242.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pin-tasor-pf24630.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pin-tasor-pf24630.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tasor-alpha-beta-pf23314.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23314", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tasor-alpha-beta-pf23314.yaml" } ], "pfam_ids": [ "PF12480", "PF12509", "PF23314", "PF24630" ], "protein_name": "Protein TASOR 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAPTSKIILELNKNALISPWKGQFIIQGCLLCDITLWSTYGTVVPLQLPRELDFKYVMDVSSLKESLPEAAFRRRSYLEQKVCCQDLCFDLYEVELTNKQGENIDKLMEYVKNKELALIKCLEDKSFFILFTSSALTPEPGFGAEQMGLHGLHLFHAPQTAGAKDLKVEDGISLKVIPILPALSYALLEAKKSLSEEGIPPNILVKHSFQELYKVDKSLSLMAPPQDGVEDTASTGKLSHAFDLPPPLETCPSESLTHLKCYFSDPAGYTLDLSAALDLLAEHPQFPCIADGVCDAGFSLVMTPDPEFLDSEMEIRKTETAEKSGRKLKVKKKAVTPSSNQRVQPKRKASTTAVTLPSKRVSLGRPTSKRTVPRTDNRSCNPTLKLVKGQFPQKRKRGAEVLAAQIVQKTRLERKKQEASVSKDAPVPTNTKRAKKQEKSPGRIASQPKPPMKKSPQKRKVNVARGRRNTRKQLQPAEKEIALHLQSEISSDGQKDGLNLSTSQQESISMIPKGPPENSVISCDSQALNMLADLALSSAAASIPSCKPRNLPCVSDLPRNNVLLTKENPLLGASDHEYHKGVKSQKAVLLPKPYSDEKISSESDLTRSQEENLVPCAQPLPIAQPAPHSEARELSDASQNSVVVEHSYALLLAEQSQKHLHQRKLPSPAFVKNGIKGPEAGTPVGKVMPFRHLQNTSPLQKHSEDSLMKHKSLFVSSTLKEFFCSHTVLKCDGSFKITFKCEGEYVFSLDSKYTSNPLEKTVLRALHGPWNTDLPENVDDVKLLLHIWVALFYSKNNKVIGSPRKVVEHKNPAKYVCINRSLESLDHSEIEAFSNVERPSVEGSVDPLLETKETHIGHATNMTFPGPNRVLPFINPPTTRDLELCVQNDQKEVFTGECHLDTSGNQNFIYSCNTEVTGGKTKQELSNKLETSNVVLSGVVSAQSHGTCIPSEDKTCQSTKMVSYNDSVTQATLTTAYDEASSELMCQKSVFDNLENKVDSFHPSPLIKTDAVQDVIQHSSHINNECQPSVEKREDNVECMMVNLDPVTLAFEKNASVPIHTEVHTTDKPTGFNIELVKRVSPASSVQYPMSALEEVQTQSSRDVPSLAMSEYKDSKCLSASSVKKETPPESLCLLQKEIPPLTSSADEGLIMEALSLVKSSSYSLASDKTKCPQDDSLQTQNGLSMSLDEVLEPSKVNVVSSTSVTLREQPSPNCIPAMSDVAGASTVIMNSGSSSLNQEKILQTFSLVFPKQTDLSLKREEVSMELSGEEADINLTLTISPPTSPSEEIAAGEIEQFQKTPVSNVGQQSRSEEMVEPEEEERLIRNREINSASCMSVYPVESRELLKNCTPEVTEKVNVTLDFPFGPLIEVSPASSPDPIVQPGDRPSSPCCLKLHSSQSEKTNKFSQIKSGEVTIPEKESLFLGPESPKGQDKLAEVQVQISAEMLQITTNAEVEGRVNMPGKVTKVSVPSEHSENLSFLEKVQCNTELNELSLPAKYGGNFKPLEKSGNSLEAGCMENRNVDVKHLALESSVPSCSPRKVVENKSLTDTLVSITTSGIVNMSLKQTSSKNIKKNVCDSDVKTDSDVKTEADSNMQTEAVNSALIDKTDVQAYSHPEVSKFVSSSDSAQCTYHAKPVSVEPGFQTQEIPVVRMASLLKNIGVELHEEKMDLSATGLQSNSMSAKDEQKTMHVLQDTICEVKEFLNGDVFSQNAHSCQNTVDFSKSISEEPSASFVPEFVDAICGVYKEHTFNESPNMVHETKADAETLSRNTEISVNASMFCGPRSGAYVQDSHDCKSCKFDVENLRGNHESQKDAVKDSCDSFTSLNNSDDTWACSSKISTLETHIPPRDQETEPRLISPNKCIPRYIQIPDSHGIPKTYANFTITKEFKDTTRRLHSLKRHRNLSANCNLLSSWTSTWHVTDDLTQHTLDLEYLRFDHKLKQIKKGGSQQSSFPKESLVQISSGTSPSTQTSEASGLHLPPESRSPILVTVVRADTRQQSHHRRGCSPSSLDGSSSFWKKKCSQSRNLKNSERSQTVPFHLNKLKYNSTLKESRNDISLILNEYAEFNKIMMNSKQIVSQDEELNVASAEAVFQEAYQPRQPVSYEDVITDLCATLHVKLKGVVREACKSPFWFYLVETEDKSFLLRTKSILKKGGHIEIELLDFCQAFHRENETLLVIIKNEDIISHLHQIPSLLKLKHFPSVVFAGVDSPEDIVNETYQELFRSGGFVVSDDVILESLTLVQLKEILKILEKLNENGKWKWLLHYRESKNLKEDVRVDSIAHKKNLILKSYQSVNIIDLLHYHNCDSPSSTKAEIFKCLLNLQIQHISARFAVFLTDKPTVSTEIFENNGILVTDVNYFTENIQKIAAPFRSSYW", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tasor-alpha-beta-domain-ipr056243.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056243", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tasor-alpha-beta-domain-ipr056243.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tasor-duf3715-ipr022188.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022188", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tasor-duf3715-ipr022188.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tasor-pin-domain-ipr056242.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056242", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tasor-pin-domain-ipr056242.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/garil-rab2-bd-pf12480.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/garil-rab2-bd-pf12480.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pin-tasor-pf24630.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pin-tasor-pf24630.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tasor-alpha-beta-pf23314.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23314", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tasor-alpha-beta-pf23314.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3715-pf12509.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12509", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3715-pf12509.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5VWN6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12480", "PF12509", "PF23314", "PF24630" ], "protein_name": "Protein TASOR 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f499e9b51c5b896ff75163f810f5f0555cef1f0ce6380b483ed27710b2615b5f", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"MATAVETEACQPTDASWESGGGGDDEMKQALPELESSQQNGGGGGLNIAEPSGGAGREENAGAEAAQSLSHEQPQDSSEAGAAALPRGPEEPERPVRRSFQIPRKSREKKALFQPLTPGSREFEDVVNILHSSYLEPTSVTNFNYRRACLVHNELLEKEFTEKRRELKFDGRLDKELSESYAFLMVDRYQVQTICEKGLHVGQSKITILGSPSMGVYLSRYADLLQANPLDTGAMGDVVIFKIMKGKIKSIYDPMGVKSLESMLNKSALDPTPKHECHVSKNANRITSLLAYRAYELTQYYFYEYGFDELRRRPRHVCPYAVVSFTYKDDIQTPKFVPSSRSNSFNTDRNIDKYNYTLWKGQLLNKGKLLCYISLRSATRAFLPIKLPEKLDVETVMSIDHLKQKIPPALFYKETYLGPNEVLKNGMYCSLYEVVEKTRIGSNMESLLQKLDREKLVLVKPLGDRGYLFLLSPYQMVPPYEYQTAKSRVLHALFLFQEPRSIVTSQKGSTNAAPQERHESMPDVLKIAQFLQFSLIQCRKEFKNISAINFHSVVEKYVSEFFKRGFGSGKREFIMFPYDSRLDDKKFLYSAPRNKSHIDTCLHAYIFRPEVYQLPICKLKELFEENRKLQQFSPLSDYEGQEEEMNGTKMKFGKRNNSRGEAIISGKQRSSHSLDYDKDRVKELINLIQCRKKSVGGDSDTEDMRSKTVLKRKLEDLPENMRKLAKTSNLSENCHLYEESPQPIGSLGHDADLRRQQQDTCNSGIADIHRLFNWLSETLANARHSDASLTDTVNKALGLSTDDAYEELRQKHEYELNSTPDKKDYEQPTCAKVENAQFKGTQSLLLEVDATSKYSVAISTSEVGTDHKLHLKEDPNLISVNNFEDCSLCPSVPIEHGFRRQQSKSNNVEETEIHWKLIPITGGNARSPEDQLGKHGEKQTPGMKSPEEQLVCVPPQEAFPNDPRVINRQRSSDYQFPSSPFTDTLKGTTEDDVLTGQVEEQCVPAAEAEPPAVSETTERTVLGEYNLFSRKIEEILKQKNVSYVSTVSTPIFSTQEKMKRLSEFIYSKTSKAGVQEFVDGLHEKLNTIIIKASAKGGNLPPVSPNDSGAKIASNPLERHVIPVSSSDFNNKHLLEPLCSDPLKDTNSDEQHSTSALTEVEMNQPQHATELMVTSDHIVPGDMAREPVEETTKSPSDVNISAQPALSNFISQLEPEVFNSLVKIMKDVQKNTVKFYIHEEEESVLCKEIKEYLIKLGNTECHPEQFLERRSKLDKLLIIIQNEDIAGFIHKIPGLVTLKKLPCVSFAGVDSLDDVKNHTYNELFVSGGFIVSDESILNPEVVTVENLKNFLTFLEELSTPEGKWQWKVHCKFQKKLKELGRLNAKALSLLTLLNVYQKKHLVEILSYHNCDSQTRNAPELDCLIRLQAQNIQQRHIVFLTEKNIKMLSSYTDNGIVVATAEDFMQNFKNLVGYHNSITEENLPQLGANENLESQSALLENDEKDEEDMSLDSGDEISHIEVCSNFHSEIWEKETKGSRGTDQKKNTQIELQSSPDVQNSLLEDKTYLDSEERTSIDIVCSEGENSNSTEQDSYSNFQVYHSQLNMSHQFSHFNVLTHQTFLGTPYALSSSQSQENENYFLSAYTESLDRDKSPPPLSWGKSDSSRPYSQEK", "sequence_length": 1670, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b43e91b51edbd83f21f5708cb08cf2a4d2f6d6934028253b37de2ec5b76f9152", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UK61.json", "taxon_id": "9606", "uniprot_accession": "Q9UK61", "uniprot_release": "2026_03" } ], "pfam_id": "PF12509", "short_name": "DUF3715", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12511", "short_name": "DUF3716", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12512", "short_name": "DUF3717", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12514", "short_name": "DUF3718", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3719-ipr022194.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022194", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3719-ipr022194.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3719-pf12516.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12516", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3719-pf12516.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A5PLN7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12516" ], "protein_name": "Protein FAM149A", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0c6d79cadec6f8302f62da57da88ec5ae3fcc85cb144d95f7383cd6bf0342d7b", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKAAVLDLGSLLAKLFETSTAPPAGPSSRPSGGAAAAGSGGSRAGTPLGTAPTLLRALAPDSPSASRRSPAPLLSSPYSRGSAASRAAGAVGTLLSWPSSPRAGKAPPQPPTPSGGGCSPARLVVPARPPSGPGGVWAALPRNPLQPGPGERELGACVAPGAGPRTLFLTLPDIGEEGASDGDSGDGEARGLSEGRRRHGFTVRSKDSLPTHFTRNVQKAIDKYTCKSLSSFSSSGSHTPTGAHTSWSGSATQSSTTGSSTERGSVYSWRDDEFDEASSQSVQRLLWEVEEMLFEGKVNPQTQSLLAECGEWTRRSLHLRVLGRQLILPTDKGVQHFQGSTPASAVHRPPLSACGHSSNIRELCISGSQIVPAALSASALPGPDDTGVADLTARSSLEEEVYHVDGKIEEYFAFDRKEDDDECLEQKPAQPGRKWRKLGLPPVSPRDCVKDAVAAEVFDHVWTNMVELLEELIRKHWETTLTEGKKQRETLKVAGNRFPHVLVPHAHADGASGPPSGHAEAHGISLASRLNPPQIHHFSSSFYSDMNGVMTIQAKPLQRRPAYFADRTQNEKEDKASGGGAGALSSAPHRLGRASDTHGLSPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLVQTSRSRFPPLVTETRGQNTAVPGCRLVSYRGRHLQNRVLSAMPDGTERSRLRERTATLERLSRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTGQSILTGSQYVPKSFQRTTLTFKRRFQVTS", "sequence_length": 773, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0c6d79cadec6f8302f62da57da88ec5ae3fcc85cb144d95f7383cd6bf0342d7b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A5PLN7.json", "taxon_id": "9606", "uniprot_accession": "A5PLN7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3719-ipr022194.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022194", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3719-ipr022194.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3719-pf12516.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12516", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3719-pf12516.yaml" } ], "pfam_ids": [ "PF12516" ], "protein_name": "Primary cilium assembly protein FAM149B1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISRYTRKAVPQSVELKGLTKHALNHHPLPERLDDISSTNNSHGKDTSSHSESDITQESPITSTDTGNSNSRSAFPSYAGTGVSTEGSSDFSWGYGELDQNATEKVQAMFTAIDELLYEQQLSAHTQGLQKECQQWAASFPHLRILGRQIITPSEGYGLYPRSPSAVSASHEATLSQERESTIFGIRGKKLHFSSSYKPSPTIKASGLCAVGGEEADCIIFSEGVIEEYLAFDHTDMEEGFHGNKSEAATEKQKLGYPPIAPFHCMKEDVLAHVFDNVWSKAVGCMEQLTRSHWEGCASDDESNVEITRLDSGSPYVLNEQHPLVLPRVPQSKVPSITSSPMSFCQASGHQPNVSGLLIHGMPLQPRNLSLMDKLLDLDDKLLTRPGSSSVLSNRNWPNRAMELSTSSLSYTTQSARRRNPPPRTLHPISTSHSRAGTPWPVEEILRGPRVPVTADTLSSPSPMTLGRNNLLPPIGTVEVEHLSAMGPQRPTKSHGDSSRARSAVVDEPNQQPQERLLLPVFSRPNTTQSFLPDTQYRSSCASEYPHQARPGRGSAGPQSHGSTKPQSRGGPISRTRQ", "sequence_length": 578, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1cbe66a2ea819f41ebfe0ee43d2acb7474803e17089e011af3155ccf800a7145", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NSV7.json", "taxon_id": "10090", "uniprot_accession": "Q6NSV7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3719-ipr022194.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022194", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3719-ipr022194.yaml" } ], "pfam_ids": [ "PF12516" ], "protein_name": "Protein FAM149A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKVAVLDLGSLFAKIFKLSTASPAVSSHPGGAAATGSVDSGASTSLREAETLTLLPSLPPDTAASREPFTPVHTPLPASHPRSSAAAQRVEATGCSGSLPSSSGASIAPPLTPYSGSAGSVASVTLPSPGVDWATLPSVTIPLGSNSVTASSPRNPRQLRAPGEREPSVWMAPGPVPKTLFFTLPDIGEEWTSDSDSQDDPEGRGLSEGLRKQSSEKSKDPLPTNFTRNVQKAIDKFASESPSSFSSSGSRTPTEAHNSWPGSSTQSSTTGLSTERSSVSSWRDDEFDKVSAQKVHQLFWEVEELLFEGKVSPQTQNLLAECSEWARRSLHLRVVGRQLVPPTDEGFQHFQGSLPSSATHEALPHVPDHTSSSRELCISGSQIVPEVHSASALTDPDGTESADLTSCSSLKEEVYHVDGNIEEYFAFDRKQDGDEHLGQSPALRGRKRHRHGLPPISPDDCIRDAVAAEVFDHVWTNVVEILEDLIRKTWESALTGGKKHKEKLKVAENRSPHVLMSRLSTDVCSVPPSRSSDTLQPSLAPHFNPPQFPQLHRFSSNFYSDLSGVMTIQAKPLQQRPTYSADRTQNDQDDKLPGGGVGASSRHRLGRILDARGPQTSVKKTPVHRRLPSIASDPQRLKTPTVYSDEILRGTKLQTGIDYLPSPAAVQTSRSRLPPIGSETGEPNTAASGSRPVSYRGRHPQSRVFSAMPDSIERSPLRERTIVLEQLSRPSTTHTFRSDTPRKGSLTPVEFVAHTWTGQSILTGSQYLPKSYQRATLTARKRFQVAS", "sequence_length": 787, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1a0e234103844fa2007e40c67d9693b1d45b71828a50915ab1aec276f740aea2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CFV2.json", "taxon_id": "10090", "uniprot_accession": "Q8CFV2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3719-ipr022194.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022194", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3719-ipr022194.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3719-pf12516.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12516", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3719-pf12516.yaml" } ], "pfam_ids": [ "PF12516" ], "protein_name": "Primary cilium assembly protein FAM149B1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISRYTRKAVPQSLELKGITKHALNHHPPPEKLEEISPTSDSHEKDTSSQSKSDITRESSFTSADTGNSLSAFPSYTGAGISTEGSSDFSWGYGELDQNATEKVQTMFTAIDELLYEQKLSVHTKSLQEECQQWTASFPHLRILGRQIITPSEGYRLYPRSPSAVSASYETTLSQERDSTIFGIRGKKLHFSSSYAHKASSIAKSSSFCSMERDEEDSIIVSEGIIEEYLAFDHIDIEEGFHGKKSEAATEKQKLGYPPIAPFYCMKEDVLAYVFDSVWCKVVSCMEQLTRSHWEGFASDDESNVAVTRPDSESSCVLSELHPLVLPRVPQSKVLYITSNPMSLCQASRHQPNVNDLLVHGMPLQPRNLSLMDKLLDLDDKLLMRPGSSTILSTRNWPNRAVEFSTSSLSYTVQSTRRRNPPPRTLHPISTSHSCAETPRSVEEILRGARVPVAPDSLSSPSPTPLSRNNLLPPIGTAEVEHVSTVGPQRQMKPHGDSSRAQSAVVDEPNYQQPQERLLLPDFFPRPNTTQSFLLDTQYRRSCAVEYPHQARPGRGSAGPQLHGSTKSQSGGRPVSRTRQGP", "sequence_length": 582, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2cda2444a39532b7065a892edf6e010ce0eb6f49f0af469a8c0327da1a2a48b3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96BN6.json", "taxon_id": "9606", "uniprot_accession": "Q96BN6", "uniprot_release": "2026_03" } ], "pfam_id": "PF12516", "short_name": "DUF3719", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12517", "short_name": "DUF3720", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12518", "short_name": "DUF3721", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/ermes-complex-go0032865.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032865", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/ermes-complex-go0032865.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/sam-complex-go0001401.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0001401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/sam-complex-go0001401.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/establishment-of-mitochondrion-localization-go0051654.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051654", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/establishment-of-mitochondrion-localization-go0051654.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mitochondrial-outer-membrane-translocase-complex-assembly-go0070096.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070096", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitochondrial-outer-membrane-translocase-complex-assembly-go0070096.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-insertion-into-mitochondrial-outer-membrane-go0045040.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0045040", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-insertion-into-mitochondrial-outer-membrane-go0045040.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mdm10-pf12519.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12519", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mdm10-pf12519.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P18409", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12519" ], "protein_name": "Mitochondrial distribution and morphology protein 10", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f79ae223d455d6618fd7d0d0efd40a472058ff61cd9a818511ca44c9bd01e4c4", "sequence_version": 5, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLPYMDQVLRAFYQSTHWSTQNSYEDITATSRTLLDFRIPSAIHLQISNKSTPNTFNSLDFSTRSRINGSLSYLYSDAQQLEKFMRNSTDIPLQDATETYRQLQPNLNFSVSSANTLSSDNTTVDNDKKLLHDSKFVKKSLYYGRMYYPSSDLEAMIIKRLSPQTQFMLKGVSSFKESLNVLTCYFQRDSHRNLQEWIFSTSDLLCGYRVLHNFLTTPSKFNTSLYNNSSLSLGAEFWLGLVSLSPGCSTTLRYYTHSTNTGRPLTLTLSWNPLFGHISSTYSAKTGTNSTFCAKYDFNLYSIESNLSFGCEFWQKKHHLLETNKNNNDKLEPISDELVDINPNSRATKLLHENVPDLNSAVNDIPSTLDIPVHKQKLLNDLTYAFSSSLRKIDEERSTIEKFDNKINSSIFTSVWKLSTSLRDKTLKLLWEGKWRGFLISAGTELVFTRGFQESLSDDEKNDNAISISATDTENGNIPVFPAKFGIQFQYST", "sequence_length": 493, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f79ae223d455d6618fd7d0d0efd40a472058ff61cd9a818511ca44c9bd01e4c4", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/P18409.json", "taxon_id": "559292", "uniprot_accession": "P18409", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Gibberella moniliformis (strain M3125 / FGSC 7600)", "origins": [ { "cited_uniprot_accession": "W7MZ22", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antifungal/azoxystrobin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:40909", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antifungal/azoxystrobin.yaml" } ], "pfam_ids": [ "PF12519" ], "protein_name": "Mitochondrial distribution and morphology protein 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MREFMDYVHSAFYEATGWNRDNSYASLNVTSDALLNFETPRGLRLTLSALASPNFATSYQLGSVGIVDGSISYLFSSVPLRLLLTPQSETVNLPELLRSYRPLTELPHRTNPRLQAPKDKPESSLLYGRLYLPQSQLEALFVKRLSPALQVQLSSVSAQHLKNGGTVLGLAQYDVGKYALEGLASSDGGLLGFRGVYNFGGDAEKPEDQAVNDNGNADRERIYGRFSTGGEIYYGTLNNTGGISVGTRFATLPAHKGTPLSATLTLNPLMGNISASYAVVAGRHCSLATRMEFNVFSYESAWAIGMELWRKPFTRPVLEDEPVIDDKVVLDEKPEVKRPKERSFQAKLEWRLDDPEPVIVKPPLPPPPPPPSTPKEEIDPGKPGEERYAGVLKTRLDQNMRIGVLWEGRVKSLLFSLGSSIDLNKLDKPFRTLGLEIQFSS", "sequence_length": 441, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "499a48434b25ab74db7f635df0281b68b5fa85834db495abe3abea4b7e8f6e2e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/W7MZ22.json", "taxon_id": "334819", "uniprot_accession": "W7MZ22", "uniprot_release": "2026_03" } ], "pfam_id": "PF12519", "short_name": "MDM10", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12520", "short_name": "DUF3723", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porcine sapelovirus (strain V13)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3724-pf12521.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12521", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3724-pf12521.yaml" } ], "pfam_ids": [ "PF00073", "PF00548", "PF00680", "PF00910", "PF12521", "PF22663" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESTTTLSFCNWIPKKQRARVYLTTSVTHEKSIGPYTYMVSDMIMKENSRTSLAMAYVEGKTLVFNNGTQLGQVHSSNTGNKPQGAYNHGSGSITQVNYYGSDYSQAWNPTQQQMDPSQFTKPVTEIAGMVAGPTLKAPDKEEEGYSDRLMQLTAGNSCITTQEAAKAVVAYGQWPSYNIDAGEHLDLATTPGTSVDRFYTFDSLQWTDTQIGEWSLPLPGGLMDTGVFGQNLRFHYLSRMGFCVHVQCNASKFHQGALIIAMIPEHQTPTQVSNGFEYRNGVTYQGNNYPTEQLPIFPHQIINLRTNNSATIVYPYTNCTPAGFGLAHNFVTLVIRVLVPLKYNTGASTFVPITVSVAPMCSQFAGLRSAVSRQGFPIRQIPGSQQFMTTHRDNGIPIYPEFQKTHNFKLPGRVTNLLQVAQVGTFLKFSNNVNDSSRIYLNLDITQGNQTARIAAIDVSMVSAHLSTTYLSRLAQMYANYRGSVVFEFMFCGSQMATGKLLIAYTPPGGSSPTTRTDAMLATHVIWDIGLQSTCKLVVPYISSSQYRQNNLTRTTLSYNGWVTVFQQTALVVPPGAPTTCQLVVTVSAADNFVLRIPTDTAYFADYQGDVKDVVQASINTTLQNALNTRPQQEQSSNGIMINQGDAPALTAAETGESDTNSGGSTMELQATNCVFSLRETDLEYLMSRYSLMYEGTLDYTNASGRRHLRYDLSFRTIGKSGSDITKFKAFTYWRFDLDVVVMILEDKPAAVRNLMFQILFTPHGGAIPSTHNSQIWNAPNSTSIYTRVGNCPASFRIPFMSVCNYYTSFYDGDGNFDQNGAAYGINPGDFIGTISIRMANDFFTADTTGSFRAKIFLRPVNIEAYMPRPLVSYKANGDARQDSSMYYPATQTGPYEVCQTKNATELTETKWANYSCSVRFDRGSFTAWFVGEDLLLVPYHAANNWSQTTHVYLWRAWEKDWRDHPELEMKVPIEDMWTDSTRDLTFLKISYATPHWLEMPTKGSAIGEYTVVINSAHFPWMQYTGPKPFRYPYLHIGQHTQYRLWMAEGDADNGFCGAGLISKGKLYGIVTAKTESKSGKTYVAYTELDEDSFLQTQQRCFDFGMDTHFNLGMHDWVQGLGQVFGEGVSGEVKKQVEDYLGQIKPIIDAGTNKVKDVIKDEMVSASMSLLVKVVASLVLYMNSKDECKMSTLASLGALLGVDIFLTDPIMYLYSKITGEPHKQGPSDWLKDFNIAINSLKGFDFLCSKLMQLIEWIKQFFQRVEPEYKYFKELLESWPKVCAKVLEFKNCKTTLGQEDICQIKVYIDKLIELGNKYGHKFNLQMSQLLQCSNIINKAYSNMTRSRHEPVAMLIHGAPGTGKSLATEIIGRAIADKLDNQRPYTLPPDPKHFDGYNQQKVVIMDDLGQNPDGEDCKMFCQMVSTTTYIPPMASLDEKGLPFISDFVLASTNQHALTPRTIAEPDAINRRWFMNVDIHLKKEYKDDRGRLDMSKCLPCKDCKPTNFRKCNPLVCGKAIILLDRKTQKNWTVDSAVTHLLEESERRKGFLNVVDAIFQGPVQIPECVREDEVKKKKVNSERDVPHDVMELVRCTKSPIIIDELEKAGFIIPVEAEVIRQTNNVNNVTQIVSATLASLAAIISVGTVVYLMVRLFSTKQGAYSGAPRPETRKPVLRKAVVQGPDMEFAKSIMRSNLCQVTTSVGPFTGLGIYDNIIVLPRHAYVSGNIVLDGVDVPVVDAVELEAEEGNLELVQLTLKRNEKFRDIRKFLSNGFHSENDCWLCINSEMFSNVYIPLKNVSAFGFLNLSMTPTYRTLVYNYPTKMGQCGGVVLKAGKILGIHIGGDGTRGFAALLKRDYFVNKQGLITEKYTPSKPINVRTKTAFHPSVFHDVFPGSKEPAAMSTNDPRLEVDLHEAIFAKYKGNVDATLPEEALIAIDHLVSKFKAIVPDDLTEKMSLEDVVYGTDNLDGLDLTTSAGYPYNTMGIRKKDLIPPKGQSLSPLLKALDLYGYDLPFTTYLKDELRPKEKVKMGKTRVIECSSLNDTIMMKQTFGRLFQVCHKNPGTYTGGWVGCNPDVDWSKLREIGDAYVCAFDYTNWDASLSPLWFDALKLFLSKLGYSGRDLVLIAQLCYSNHIYKNEGYKVAGGMPSGCSGTSVFNSIINNIVIRTLIMLVYKNINLDELLVLCYGDDLLVAYPYELDPNVLVPLAKSYGLTITPADKSTTFQTGTKLTDVTFLKRGFKFDEEYPFLCHPVFPMEEVHESIRWTKNASYTQEHVTSLCLLAWHNGEEVYEEFCTKIRSVPVGRALILPPYSQLRRSWLDMF", "sequence_length": 2322, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4e35a5cc89c98e5e7a07615e9e0e9d1ad82cf71cd32a6011498e5045415d9085", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8JJT0.json", "taxon_id": "1002921", "uniprot_accession": "Q8JJT0", "uniprot_release": "2026_03" } ], "pfam_id": "PF12521", "short_name": "DUF3724", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Papaya ringspot virus (strain P / mutant HA)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3725-pf12523.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12523", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3725-pf12523.yaml" } ], "pfam_ids": [ "PF00851", "PF01577", "PF12523", "PF13608" ], "protein_name": "P3N-PIPO polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSLYTLRAAAQYDRRLESKKGSGWVEHKLERKGERGNTHYCSEFDISKGAKILQLVQIGNTEVGRTFLEGNRFVRANIFEIIRKTMVGRLGYDFESELWVCRNCDKTSEKYFKKCDCGETYYYSERNLMRTMNDLMYQFDMTPSEINSVDLEYLANAVDYAEQLVKRSQVPEPVELAMMEPIVASGEGILMVSEPEVMPVTTKVEEAWTIQIGEIPVPLVVIKETPVISGVEGTLNSTGFSLEADITKLVEKEILQEEVKEAVHLALEVGNEIAEKKPELKLIPYWSASLELHKRIRKHKEHAKIAAIQVQKEREKDQKVFSALELRLNLKSRRRNQAVVCDKRGTLKWETQRGHKKSKLMQQASDFVVTQIHCDFGCKTQYSEPHIPGIKQSTSKKICKPRKHSRIVGNSKINYIMKNLCDTIIERGIPVELVTKRCKRRILQKEGRSYVQLRHMNGIRARQDVSSSPDMELLFTQFCKFLVGHKPLKSKNLTFGSSGLIFKPKFADNVGRYFGDYFVVRGRLGGKLFDGRSKLARSVYAKMDQYNDVAEKFWLGFNRAFLRHRKPTDHTCTSDMDVTMCGEVAALATIILFPCHKITCNTCMSKVKGRVIDEVGEDLNCELERLRETLSAYGGSFGHVSTLLDQLNRVLNARNMNDGAFKEIAKKIDEKKESPWTHMTTINNTLYKGSLATGYEFERASNSLREIVRWHLKRTESIKAGSVESFRNKRSGKAHFNPALTCDNQLDKNGNFLWGERQYHAKRFFANYFEKIDHSKGYEYYSQRQNPNGIRKIAIGNLVFSTNLERFRQQMVEHHIDQGPITRECIALRNNNYVHVCSCVTLDDGTPATSELKTPTKNHIVLGNSGDPKYVDLPTLESDSMYIAKKGYCYMNIFLAMLINIPENEAKDFTKRVRDLVGSKLGEWPTMLDVATCANQLVVFHPDAANAELPQILVDHRQKTMHVIDSFGSVDSGYHILKANTVNQLIQFARDPLDSEMKHYIVGGEFDPTTNCLHQLIRVIYKPHELRSLLRNEPYLIVIALMSPSVLLTLFNSGAVEHALNYWIKRDQDVVEVIVLVEQLCRKVTLARTILEQFNEIRQNARDLHELMDRNNKPWISYDRSLELLSVYANSQLTDEGLLKQGFSTLDPRLREAVEKNLRHSFAGRMACVKFVSKVALKVLCVQITTVFFRVFKAKRARRFKNCIRLLTEILCTRGRKSVPTASQGWG", "sequence_length": 1228, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "29c852793298b61f7941c603b69563b21a66a82430da3bbcb7c29c3a49877257", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P0CJ98.json", "taxon_id": "31731", "uniprot_accession": "P0CJ98", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Papaya ringspot virus (strain P / mutant HA)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3725-pf12523.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12523", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3725-pf12523.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF00680", "PF00767", "PF00851", "PF00863", "PF01577", "PF08440", "PF12523", "PF13608" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSLYTLRAAAQYDRRLESKKGSGWVEHKLERKGERGNTHYCSEFDISKGAKILQLVQIGNTEVGRTFLEGNRFVRANIFEIIRKTMVGRLGYDFESELWVCRNCDKTSEKYFKKCDCGETYYYSERNLMRTMNDLMYQFDMTPSEINSVDLEYLANAVDYAEQLVKRSQVPEPVELAMMEPIVASGEGILMVSEPEVMPVTTKVEEAWTIQIGEIPVPLVVIKETPVISGVEGTLNSTGFSLEADITKLVEKEILQEEVKEAVHLALEVGNEIAEKKPELKLIPYWSASLELHKRIRKHKEHAKIAAIQVQKEREKDQKVFSALELRLNLKSRRRNQAVVCDKRGTLKWETQRGHKKSKLMQQASDFVVTQIHCDFGCKTQYSEPHIPGIKQSTSKKICKPRKHSRIVGNSKINYIMKNLCDTIIERGIPVELVTKRCKRRILQKEGRSYVQLRHMNGIRARQDVSSSPDMELLFTQFCKFLVGHKPLKSKNLTFGSSGLIFKPKFADNVGRYFGDYFVVRGRLGGKLFDGRSKLARSVYAKMDQYNDVAEKFWLGFNRAFLRHRKPTDHTCTSDMDVTMCGEVAALATIILFPCHKITCNTCMSKVKGRVIDEVGEDLNCELERLRETLSAYGGSFGHVSTLLDQLNRVLNARNMNDGAFKEIAKKIDEKKESPWTHMTTINNTLYKGSLATGYEFERASNSLREIVRWHLKRTESIKAGSVESFRNKRSGKAHFNPALTCDNQLDKNGNFLWGERQYHAKRFFANYFEKIDHSKGYEYYSQRQNPNGIRKIAIGNLVFSTNLERFRQQMVEHHIDQGPITRECIALRNNNYVHVCSCVTLDDGTPATSELKTPTKNHIVLGNSGDPKYVDLPTLESDSMYIAKKGYCYMNIFLAMLINIPENEAKDFTKRVRDLVGSKLGEWPTMLDVATCANQLVVFHPDAANAELPQILVDHRQKTMHVIDSFGSVDSGYHILKANTVNQLIQFARDPLDSEMKHYIVGGEFDPTTNCLHQLIRVIYKPHELRSLLRNEPYLIVIALMSPSVLLTLFNSGAVEHALNYWIKRDQDVVEVIVLVEQLCRKVTLARTILEQFNEIRQNARDLHELMDRNNKPWISYDRSLELLSVYANSQLTDEGLLKQGFSTLDPRLREAVEKTYATLLQEEWRALSLFQKLHLRYFAFKSQPSFSEYLKPKGRADLKIVYDFSPKYCVHEVGKAFLLPVKAGAKIASRIINGCGAFIRKSAAKGCAYIFKDLFQFVHVVLVLSILLQIFRSAQGIATEHLQLKQAKAEVERQKDFDRLEALYAELCVKSGEQPTTEEFLDFVMEREPRLKDQAYNLIYIPVIHQAKSDNEKKLEQVIAFITLILMMIDVDKSDCVYRILNKFKGVINSSNTNVYHQSLDDIRDFYEDKQLTIDFDITGENQINRGPIDVTFEKWWDNQLSNNNTIGHYRIGGTFVEFSRVNAATVASEIAHSPEREFLVRGAVGSGKSTNLPFLLSKHGSVLLIEPTRPLCENVCKQLRGEPFHCNPTIRMRGLTAFGSTNITIMTSGFALHYYAHNIQQLRLFDFIIFDECHVIDSQAMAFYCLMEGNAIEKKILKVSATPPGREVEFSTQFPTKIVTEQSISFKQLVDNFGTGANSDVTAFADNILVYVASYNEVDQLSKLLSDKGYLVTKIDGRTMKVGKTEISTSGTKFKKHFIVATNIIENGVTLDIEAVIDFGMKVVPEMDSDNRMIRYSKQAISFGERIQRLGRVGRHKEGIALRIGHTEKGIQEIPEMAATEAAFLSFTYGLPVMTHNVGLSLLKNCTVRQARTMQQYELSPFFTQNLVNFDGTVHPKIDVLLRPYKLRDCEVRLSEAAIPHGVQSIWLSARDYEAVGGRLCLEGDVRIPFLIKDVPERLYKELWDIVQTYKRDFTFGRINSVSAGKIAYTLRTDVYSIPRTLITIDKLIESENMKHAHFKAMTSCTGLNSSFSLLGVINTIQSRYLVDHSVENIRKLQLAKAQIQQLEAHMQENNVENLIQSLGAVRAVYHQSVDGFKHIKRELGLKGVWDGSLMIKDAIVCGFTMAGGAMLLYQHFRDKFTNVHVFHQGFSARQRQKLRFKSAANAKLGREVYGDDGTIEHYFGEAYTKKGNKKGKMHGMGVKTRKFVATYGFKPEDYSYVRYLDPLTGETLDESPQTDISMVQDHFSDIRRKYMDSDSFDRQALIANNTIKAYYVRNSAKAALEVDLTPHNPLKVCDNKLTIAGFPDREAELRQTGPPRTIQVDQVPPPSKSVHHEGKSLCQGMRNYNGIASVVCHLKNTSGKGKSLFGIGYNSFIITNRHLFKENNGELIVKSQHGKFIVKNTTTLQIAPVGKTDLLIIRMPKDFPPFHSRARFRAMKAGDKVCMIGVDYQENHIASKVSETSIISEGTGDFGCHWISTNDGDCGNPLVSVSDGFIVGLHSLSTSTGDQNFFAKIPAQFEEKVLRKIDDLTWSKHWSYNINELSWGALKVWESRPEAIFNAQKEVNQLNVFEQSGGRWLFDKLHGNLKGVSSAPSNLVTKHVVKGICPLFRNYLECDEEAKAFFSPLMGHYMKSVLSKEAYIKDLLKYSSDIVVGEVNHDVFEDSVAQVIELLNDHECPELEYITDSEVIIQALNMDAAVGALYTGKKRKYFEGSTVEHRQALVRKSCERLYEGRMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNNWFYSKNMECPWTVGMTKFYKGWDEFLKKFPDGWVYCDADGSQFDSSLTPYLLNAVLSIRLWAMEDWDIGEQMLKNLYGEITYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLMVLITMYYALRKAGYDTKTQEDMCVFYINGDDLCIAIHPDHEHVLDSFSSSFAELGLKYDFAQRHRNKQNLWFMSHRGILIDDIYIPKLEPERIVAILEWDKSKLPEHRLEAITAAMIESWGYGDLTHQIRRFYQWVLEQAPFNELAKQGRAPYVSEVGLRRLYTSERGSMDELEAYIDKYFERERGDSPELLVYHESRGTDDYQLVCSNNTHVFHQSKNEAVDAGLNEKLKEKEKQKEKEKEKQKEKEKDGASDGNDVSTSTKTGERDRDVNVGTSGTFTVPRIKSFTDKMVLPRIKGKTVLNLNHLLQYNPQQIDISNTRATHSQFEKWYEGVRNDYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTSRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN", "sequence_length": 3344, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a10ee213cb321a9fb83d253607103f4a4e9ad309ec79891c7d4247663ba17080", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q01901.json", "taxon_id": "31731", "uniprot_accession": "Q01901", "uniprot_release": "2026_03" } ], "pfam_id": "PF12523", "short_name": "DUF3725", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12525", "short_name": "DUF3726", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis E virus genotype 2 (isolate Human/Mexico)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3729-pf12526.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12526", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3729-pf12526.yaml" } ], "pfam_ids": [ "PF00978", "PF01443", "PF01660", "PF01661", "PF05417", "PF12526" ], "protein_name": "Non-structural polyprotein pORF1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAHQFIKAPGITTAIEQAALAAANSALANAVVVRPFLSHQQVEILINLMQPRQLVFRPEVFWNHPIQRVIHNELEQYCRARSGRCLEIGAHPRSINDNPNVLHRCFLHPVGRDVQRWYTAPTRGPAANCRRSALRGLPPADRTYCFDGFAGCRFAAETGVALYSLHDLQPADVAEAMARHGMTRLYAAFHLPPEVLLPPGTYRTSSYLLIHDGKRAVVTYEGDTSAGYNHDVATLRTWIRTTKVVGEHPLVIERVRGIGCHFVLLITAAPEPSPMPYVPYPRSTEVYVRSIFGPGGSPSLFPTACAVKSTFHAVPTHIWDRLMLFGATLDDQAFCCSRLMTYLRGISYKVTVGALVANEGWNATEDALTAVITAAYLTICHQRYLRTQAISKGMRRLELEHAQKFISRLYSWLFEKSGRDYIPGRQLQFYAQCRRWLSAGFHLDPRTLVFDESVPCSCRTTIRRIAGKFCCFMKWLGQECSCFLQPAEGLAGDQGHDNEAYEGSDVDTAEPATLDITGSYIVDGRSLQTVYQALDLPADLVARAARLSATVTVTETSGRLDCQTMIGNKTFLTTFVDGARLEVNGPEQLNLSFDSQQCSMAAGPFCLTYAAVDGGLEVHFSTAGLESRVVFPPGNAPTAPPSEVTAFCSALYRHNRQSQRQSVIGSLWLHPEGLLGLFPPFSPGHEWRSANPFCGESTLYTRTWSTITDTPLTVGLISGHLDAAPHSGGPPATATGPAVGSSDSPDPDPLPDVTDGSRPSGARPAGPNPNGVPQRRLLHTYPDGAKIYVGSIFESECTWLVNASNAGHRPGGGLCHAFFQRYPDSFDATKFVMRDGLAAYTLTPRPIIHAVAPDYRLEHNPKRLEAAYRETCARRGTAAYPLLGAGIYQVPVSLSFDAWERNHRPFDELYLTELAARWFESNRPGQPTLNITEDTARAANLALELDSGSEVGRACAGCKVEPGVVRYQFTAGVPGSGKSKSVQQADVDVVVVPTRELRNAWRRRGFAAFTPHTAARVTSGRRVVIDEAPSLPPHLLLLHMQRAASVHLLGDPNQIPAIDFEHTGLIPAIRPELVPTSWWHVTHRCPADVCELVRGAYPKIQTTSKVLRSLFWGEPAVGQKLVFTQAAKAAHPGSITVHEAQGATFTTTTIIATADARGLIQSSRAHAIVALTRHTEKCVILDSPGLLREVGISDAIVNNFFLSGGEVGHQRPSVIPRGNPDRNVDVLAAFPPSCQISAFHQLAEELGHRPAPVAAVLPPCPELEQGLLYLPQELASCDSVVTFELTDIVHCRMAAPSQRKAVLSTLVGRYGRRTRLYDAGHTDVRASLARFIPTLGRVTATTCELFELVEAMVEKGQDGSAVLELDLCSRDVSRITFFQKDCNKFTTGETIAHGKVGQGIFRWSKTFCALFGPWFRAIEKAILSLLPQAVFYGDAYDDSVFSAAVAGASHAMVFENDFSEFDSTQNNFSLGLECAIMEECGMPQWLVRLYHAVRSAWILQAPKESLRGFWKKHSGEPGSLLWNTVWNMAIIAHCYEFRDLQVAAFKGDDSVVLCSEYRQSPGAGSLIAGCGLKLKADFRPIGLYAGVVVAPGLGALPDVVRFAGRLSEKNWGPDPERAEQLRLAVQDFLRRLTNVAQICVEVVSRVYGVSPGLVHNLIGMLQTIGDGKAHFTESVKPILDLTHSIMHRSE", "sequence_length": 1691, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "31331ad8cff3d675ca949b425ce03770c473f33efa77b32644894659c9f5245b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q03495.json", "taxon_id": "31768", "uniprot_accession": "Q03495", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis E virus genotype 1 (isolate Human/Myanmar/HEVNE8L)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3729-pf12526.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12526", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3729-pf12526.yaml" } ], "pfam_ids": [ "PF00978", "PF01443", "PF01660", "PF01661", "PF05417", "PF12526" ], "protein_name": "Non-structural polyprotein pORF1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAHQFIKAHGITTAIEQAALAAANSALANAVVVRPFLSHQQIEILINLMQPRQLVFRPEVFWNHPIQRVIHNELELYCRARSGRCLEIGAHPRSINDNPNVVHRCFLLPVGRDVQRWYTAPTRGPAANCRRSALRGLPAVDRTYCLDGFSGCNFPAETGIALYSLHDMSPSDVAEAMFRHGMTRLYAALHLPPEVLLPPGTYRTASYLLIHDGRRVVVTYEGDTSAGYNHDVSNLRSWIRTTKVTGDHPLVIERVRAIGCHFVLLLTAAPEPSPMPYVPYPRSTEVYVRSIFGPGGTPSLFPTSCSTKSTFHAVPAHIWDRLMLFGATLDDQAFCCSRLMTYLRGISYKVTVGTLVANEGWNASEDALTAVITAAYLTICHQRYLRTQAISKGMRRLEREHAQKFITPLYSWLFEKSGRDYIPGRQLEFYAQCRRWLSAGFHLDPRVLVFDESAPCRCRTAIRKALSKFCCFMKWLGQECTCFLQPAEGVVGDQGHDNEAYEGSDVDPAESAISDISGSYVVPGTALQPLYQALDLPAEIVARAGRLTATVKVSQVDGRIDCETLLGNKTFRTSFVDGAVLEANGPERYNLSFDASQSTMAAGPFSLTYAASAAGLEVRYVAAGLDHRAVFAPGVSPRSAPGEVTAFCSALYRFNREAQRHSLTGNLWFHPEGLIGLFAPFSPGHVWESANPFCGESTLYTRTWSEVDAVSSPARPDLGLMSEPSIPSRAATPTLAVLLPPPAPDPPPPPSAPALDEPASGATAGAPAITHQTARHRRLLFTYPDGSKVFAGSLFESTCTWLVNASNVDHRPGGGLCHAFYQRYPASFDAASFVMRDGAAAYTLTPRPIIHAVAPDYRLEHNPKRLEAAYRETCSRLGTAAYSLLGTGIYQVPIGPSFDAWERNHRPGDELYLPELAARWFEANRPTRPTLTITEDVARTANLAIELDSATDVGRACAGCRVTPGVVQYQFTAGVPGSGKSRSITQADVDVVVVPTRELRNAWRRRGFAAFNPHTAARVTQGRRVVIDEAPSLPPHLLLLHMQRAATVHLLGDPNQIPAIDFEHAGLVPAIRPDLGPTSWWHVTHRCPADVCELIRGAYPMIQTTSRVLRSLFWGEPAVGQKLVFTQAAKAANPGSVTVHEAQGATYTETTIIATADARGLIQSSRAHAIVALTRHTEKFVIIDAPGLLREVGISDAIVNNFFLAGGEIGHQRPSVIPRGNPDANVDTLAAFPPSCQISAFHQLAEELGHRPVPVAAVLPPCPELEQGLLYLPQGLTACDSVVTFELTDIVHCRMAAPNQRKAVLSTLVGRYGRRTKLYNASHSDVRDSLARFIPAIGPVQVTTCELYELVEAMVEKGQDGSAVLELDLCNRDVSRITFFQKDCNKFTTGETIAHGKVGQGISAWSKTFCALFGPWFRAIEKAILALLPQGVFYGDAFDDTVFSAAVAAAKASMVFENDFSEFDSTQNNFSLGLECAIMEECGMPQWLIRLYHLIRSAWILQAPKESLRGFWKKHSGEPGTLLWNTVWNMAVITHCYDFRDFQVAAFKGDDSIVLCSEYRQSPGAAVLIAGCGLKLKVDFRPIGLYAGVVVAPGLGALPDVVRFAGRLTEKNWGPGPERAEQLRLAVSDFLRKLTNVAQMCVDVVSRVYGVSPGLVHNLIGMLQAVADGKAHFTESVKPVLDLTNSILCRVE", "sequence_length": 1693, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "510c3ba0e1c5b72201d59655e3976cb1bde18ba494e71b78916bf264c295534d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q04610.json", "taxon_id": "31769", "uniprot_accession": "Q04610", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis E virus genotype 3 (isolate Human/United States/US2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3729-pf12526.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12526", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3729-pf12526.yaml" } ], "pfam_ids": [ "PF00978", "PF01443", "PF01660", "PF01661", "PF05417", "PF12526" ], "protein_name": "Non-structural polyprotein pORF1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAHQFIKAPGITTAIEQAALAAANSALANAVVVRPFLSRVQTEILINLMQPRQLVFRPEVLWNHPIQRVIHNELEQYCRARAGRCLEVGAHPRSINDNPNVLHRCFLRPVGRDVQRWYSAPTRGPAANCRRSALRGLPPVDRTYCFDGFSRCAFAAETGVALYSLHDLWPADVAEAMARHGMTRLYAALHLPPEVLLPPGTYHTTSYLLIHDGNRAVVTYEGDTSAGYNHDVSILRAWIRTTKIVGDHPLVIERVRAIGCHFVLLLTAAPEPSPMPYVPYPRSTEVYVRSIFGPGGSPSLFPSACSTKSTFHAVPVHIWDXLMLFGATLXDQAFCCSRLMTYLRGISYKVTVGALVANEGWNASEDALTAVITAAYLTICHQRYLRTQAISKGMRRLEVEHAQKFITRLYSWLFEKSGRDYIPGRQLQFYAQCRRWLSAGFHLXPRXLVFDESVPCRCRTFLKKVAGKFCCFMRWLGQECTCFLEPAEGLVGDQGHDNEAYEGSEVDPAEPAHLDVSGTYAVHGHQLEALYRALNVPHDIAARASRLTATVELVASPDRLECRTVLGNKTFRTTVVDGAHLEANGPEEYVLSFDASRQSMGAGSHSLTYELTPAGLQVKISSNGLDCTATFPPGGAPSAAPGEVAAFCSALYRYNRFTQRHSLTGGLWLHPEGLLGIFPPFSPGHIWESANPFCGEGTLYTRTWSTSGFSSDFSPPEAAAPASAAAPGLPYPTPPVSDIWVLPPPSEESHVDAASVPSVPEPAGLTSPIVLTPPPPPPPVRKPATSPPPRTRRLLYTYPDGAKVYAGSLXESDCDWLVNASNPGHRPGGGLCHAFYQRFPEAFYSTEFIMREGLAAYTLTPRPIIHAVAPDYRVEQNPKRLEAAYRETCSRRGTAAYPLLGSGIYQVPVSLSFDAWERNHRPGDELYLTEPAAAWFEANKPAQPALTITEDTARTANLALEIDAATEVGRACAGCTISPGIVHYQFTAGVPGSGKSRSIQQGDVDVVVVPTRELRNSWRRRGFAAFTPHTAARVTIGRRVVIDEAPSLPPHLLLLHMQRASSVHLLGDPNQIPAIDFEHAGLVPAIRPELAPTSWWHVTHRCPADVCELIRGAYPKIQTTSRVLRSLFWNEPAIGQKLVFTQAAKAANPGAITVHEAQGATFTETTIIATADARGLIQSSRAHAIVALTRHTEKCVILDAPGLLREVGISDVIVNNFFLAGGEVGHHRPSVIPRGNPDQNLGTLQAFPPSCQISAYHQLAEELGHRPAPVAAVLPPCPELEQGLLYMPQELTVSDSVLVFELTDIVHCRMAAPSQRKAVLSTLVGRYGRRTKLYEAAHSDVRESLARFIPTIGPVRATTCELYELVEAMVEKGQDGSAVLELDLCNRDVSRITFFQKDCNKFTTGETIAHGKVGQGISAWSKTFCALFGPWFRAIEKEILALLPPNIFYGDAYEESVFAAAVSGAGSCMVFENDFSEFDSTQNNFSLGLECVVMEECGMPQWLIRLYHLVRSAWILQAPKESLKGFWKKHSGEPGTLLWNTVWNMAIIAHCYEFRDFRVAAFKGDDSVVLCSDYRQXRNAAALIAGCGLKLKVDYRPIGLYAGVVVAPGLGTLPDVVRFAGRLSEKNWGPGPERAEQLRLAVCDFLRGLTNVAQVCVDVVSRVYGVSPGLVHNLIGMLQTIADGKAHFTENIKPVLDLTNSIIQRVE", "sequence_length": 1708, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d122a8c8bd62d95ed4acfc06c5029133d4157afa7cc9f8db83eeb59709045422", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9YLR1.json", "taxon_id": "509615", "uniprot_accession": "Q9YLR1", "uniprot_release": "2026_03" } ], "pfam_id": "PF12526", "short_name": "DUF3729", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12527", "short_name": "DUF3727", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/prepilin-type-n-terminal-cleavage-methylation-domain-containing-protei-nf007660.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007660", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/prepilin-type-n-terminal-cleavage-methylation-domain-containing-protei-nf007660.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/prepilin-peptidase-dependent-protein-c-like-c-terminal-domain-ipr022204.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022204", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/prepilin-peptidase-dependent-protein-c-like-c-terminal-domain-ipr022204.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/prepilin-type-n-terminal-cleavage-methylation-domain-containing-protei-tigr02532.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR02532", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/prepilin-type-n-terminal-cleavage-methylation-domain-containing-protei-tigr02532.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/t2ssppdc-pf12528.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12528", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/t2ssppdc-pf12528.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/modified_residue/prokar-nter-methyl.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00409", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/modified_residue/prokar-nter-methyl.yaml" }, { "cited_uniprot_accession": 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"record_id": "Pfam:PF11229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/focadhesin-pf11229.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5VW36", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11229", "PF12530" ], "protein_name": "Focadhesin", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b6e894b6695843daac4de3eff5988e6407423964a6b6bf41518d5dfa1f204daf", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSDDIRKRFEFPNSLIQSQAVGHLIAAVLKENGFSEKIHQSTNQTPALNLLWEKCCSDNVVVRTACCEGLVALVAQDHAEFSYVLNGILNLIPSTRNTHGLIKAIMHLLQMQALKEGQGGEKNIQSIYTIRNHPHPLITVLEHRPDCWPVFLQQLTAFFQQCPERLEVSCIQIMAPFLWYLYCEPSQLQEYAKLRLALLKVLLQPQVLCDKDQPSILEQQILQLCCDIVPCLQVKDLIQTTEAMMFIEEVCLSLLRHPVFWKIQLTQMSLQLLCVSEVSLKITGECSSSIHLLEHSVELLKEDFPVELVIIGIALLLLQTPASQQKPILNLALKLLSVTEDQKIPKSSLLLVMPILQILSSTALEDCISVDEEGPSRQQLALNLLEMIQQECYRDDHQKLSYKLVCPVTSMYGTIFTAWRILEVMTDSSAASDWLASVESLLPITAVIPAPAFLLLAHLLVEDKGQNLHQILKVTTELAQADSSQVPNLIPVLMFKLGRPLEPILYNDILYTLPKLGVHKVCIGQILRIIQLLGTTPRLRAVTLRLLTSLWEKQDRVYPELQRFMAVSDVPSLSVGKEVQWEKLIAKAASIRDICKQRPYQHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTRPLILKTLSELFSLVPSLTVNTTEYENFKVQVLSFLWTHTQNKDPIVANAAYRSLANFSAGEHTILHLPEKIRPEIPIPEELDDDEDVEDVDLSVPGSCYLKLLSLTPPLVLPALEEFFTSLVKQEMVNMPRGIYHSALKGGARSDQGKTVAGIPNFILKMYETNKQPGLKPGLAGGMLFCYDVSMYQSKDGKPLNRLMASRGRSFKQTSLALVHEVHIQLSEWHRAIFLPQAWLAYMNRAYHAILQGRLGELELQLKHGKEEPEEVQYKKSTAWLWVRDMLTDEITKAAAKESPVVKGNALLALSSLAVVVSRHEASLSSDSDGLLEVQPNFLSMKEWVSMVLDTLLVIVDSHYQPRGQLLSWFYYKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSADESQAVQIHMGLALGMFLSRLCEEKLSDISGQEMNLLLMKSLDALENCCFDTSLEYNTGCILGVGLVLSLMSHSSQMQSRVHVAALLRKLSAHVDDSGSQSRTFQEVLAYTLSCVCTSAFSAGIIEATEAEDVMNKLRLLVENSQQTSGFALALGNIVHGLSVCGHGKAEDLGSKLLPAWIRIVLTEGTPTMLCLAALHGMVALVGSEGDVMQLKSEAIQTSHFQGRLNEVIRTLTQVISVSGVIGLQSNAVWLLGHLHLSTLSSSQSRASVPTDYSYLPESSFIGAAIGFFITGGKKGPESVPPSLLKVVMKPIATVGESYQYPPVNWAALLSPLMRLNFGEEIQQLCLEIMVTQAQSSQNAAALLGLWVTPPLIHSLSLNTKRYLLISAPLWIKHISDEQILGFVENLMVAVFKAASPLGSPELCPSALHGLSQAMKLPSPAHHLWSLLSEATGKIFDLLPNKIRRKDLELYISIAKCLLEMTDDDANRIAQVTKSNIEKAAFVKLYLVSQGRFPLVNLTDMLSVAVQHREKEVLAWMILHSLYQARIVSHANTGVLKRMEWLLELMGYIRNVAYQSTSFHNTALDKALDFFLLIFATAVVAWADHTAPLLLGLSASWLPWHQENGPAGPVPSFLGRSPMHRVTLQEVLTLLPNSMALLLQKEPWKEQTQKFIDWLFSIMESPKEALSAQSRDLLKATLLSLRVLPEFKKKAVWTRAYGW", "sequence_length": 1801, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b6e894b6695843daac4de3eff5988e6407423964a6b6bf41518d5dfa1f204daf", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VW36.json", "taxon_id": "9606", "uniprot_accession": "Q5VW36", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/alkane-biosynthetic-process-go0043447.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0043447", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/alkane-biosynthetic-process-go0043447.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cutin-biosynthetic-process-go0010143.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010143", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cutin-biosynthetic-process-go0010143.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-post-transcriptional-gene-silencing-by-regulatory-ncrna-go1900369.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1900369", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-post-transcriptional-gene-silencing-by-regulatory-ncrna-go1900369.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/focadhesin-rst-duf3730-ipr022542.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/focadhesin-rst-duf3730-ipr022542.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf3730-pf12530.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12530", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf3730-pf12530.yaml" } ], "pfam_ids": [ "PF12530" ], "protein_name": "Protein RST1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASYATLLEKTRVPQPSIQRFAVISVFSKLRSAPEQFGSEAEAGREAISFCLTSESITVVDQSVHELCRLVSDSVLDLSRGLLELQSALEGCDSKLVSLFVKGLGFLIRIGYERNNGNWKFNSTENHPFVRIQSSRVETQTELLHQVSLFVMHNRRLGMVGVCEFLEPFLNFTILRIPLSDSSSSLFARELISSMASLCCSSRHEALPIFRLLMRCLKYIPGNNLEVIVKILVDAYTVVVRDLVGTGLEVTEVHLLGVQLVDGVLFLCASPHVQTTEQESVIESLKHLLAVQKDLGLAYSHDLSLVVLSLVFMLAKSTVEHEQLCILKFLLFLLKWKTESENLSVKDAAGSSVESLLLFPITALMSSPSKSIKVAASKVLSIVENFLVTVSNAPKIEVHTSKGDSPLSRVGSVVFRFMQQLWHQNDYTPSTSSFLRVAYTNGSEKQETYLGPVTWNSLLREHAERFWDKKKLSASFCLSQEIPILLGAVAGVMVMHPSLGADAIGSLTIIGGIDSKMSVPLLLAVLYFSNLLSRTNVPCQSLLSKLLGLLPSLAAQQVMIPLVVQTITPMLRKDAKGLLYATAIRLLCQTWVVNDRAFSSLQEVLRPQGFIEYISERHICISMAASIHDVCKRHPDRGVDLILSVQACIESQNCPVRALGFQSLSHLCEADVIDFYTAWDVIKKHAQHIKLDPLLAYSVCHLLKWGAMDAEAYPEDAENVLNILWEIGSSMQKPHDSQWTKARVSAIVALGQYEVSFMENKFSDFNKNCTYLLFSETNAEILNALEDLSIKIMIHEHSVRRRYVREKKVPGSKIEKLLDVIPQVIFPAGKEIKTGELPGAALLCLSYNPRDVKFGSSRSFHDVHFQYEEAFRVVVKSLQLSRNISLALISLQSLKAFMRRWMRANILSIDATTKELSSDKTSKATNNIMKSLVHMAEEALPRCAENIALALGALCAALPAASHNIKASASKFLLSWLLEHEHEHRQWTAGISLGLISSSLHVTDHKQKFQNISGLLEVLCSSKSTLVKGACGVGLGFSCQDLLTRTEASASSDIDSDSYRNQEERLLGRIVRLLSSILHGFLHTPCDILESLSALFPPGEEDNVIGLPQLLDESSDDFDDDTWGIAGLIIGLGMSVGAIYRAGKKDAVVKIKNLIVSWIPYADSLKQTSGSNSKVSVRLFSVGSCLALPIVITFCQKVELFDAHEVDDIIGCFKDLISELLIVRKSGALRKRLLMASCIGAGDLLGSVLNEGIHPVKIESVKELLELFKKCYSGLYPPVAHFGGMLGVVNVLGAGAGNLVYSHPRPRAPPASSEENEISYVSGPLLSNAYFTQQLTPVVQEIFLIAQNTKDRQLQHYAAWAISILRTYMRSGESSSLSNENQSDDSDRNSISHNVPEHTMVMKLAQGLTNPSFPLAGSPLNIGTMASALRCLSHAPRLPNLDWGATIRRLMKQETQTDVTQSGDVPKEITLREECFKFSLAHASEFDELLAFLDELSELSRFKALEESLQSCLLCHLGGLMRIFSGSRMNKLFDDVSCFVVSLSSDQTYSCDQKSSLRVSCWKGLSQCLEETSLESSEYVTKIEKCIELLFAVLPVASQSPRADQMGSVKEWSEAVTCLQKSHRDWLYKFLQVSNLEPGNEKTNFQGDLKKIQAKAKLAKLGSVPFSELGKLKAIILNCEESDIWDVLIEIVAALHHAEGGIKRQWLIDAVEISCVSSHPSTAIIFVGLLSSICCEYMPFLNLDRSTVLSDMSVTVTSLLSDPSYEVVTEPFISFLWTSLERVYSFATESDANARLSSQQIAQSERDKAPMLVKVMHYICVAFRDHLPLEKQLRLASMDMS", "sequence_length": 1841, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ebf9274be66785937ba1392971fba5423f1f659d3737c5d2c4714d34d61250b2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q7XZF5.json", "taxon_id": "3702", "uniprot_accession": "Q7XZF5", "uniprot_release": "2026_03" } ], "pfam_id": "PF12530", "short_name": "DUF3730", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12531", "short_name": "DUF3731", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12532", "short_name": "LmuB_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 9, "discovery_scanned": true, "example_count": 9, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/volume-sensitive-anion-channel-activity-go0005225.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0005225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/volume-sensitive-anion-channel-activity-go0005225.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/lrrc8-pannexin-like-tm-region-ipr021040.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021040", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lrrc8-pannexin-like-tm-region-ipr021040.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pannexin-like-pf12534.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12534", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pannexin-like-pf12534.yaml" } ], "pfam_ids": [ "PF12534", "PF13855" ], "protein_name": "Volume-regulated anion channel subunit LRRC8E", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIPVAEFKQFTEQQPAFKVLKPWWDVLAEYLTVAMLMIGVFGCTLQVTQDKIICLPSHESRENISGAPCQQLLPQGISEQMGGLRELSGLKNNLDLQQYSFINQLCYETALHWYAKYFPYLVVIHTLIFMVCTSFWFKFPGTSSKIEHFISILGKCFDSPWTTRALSEVSGENHKGPASGRAMVTTVTTTGAGSGKVGEGEKEKVLIEPEKVVSEPPVVTLLDKKEGEQAKALFEKVKKFRVHVEEGDILYSMYIRQTVLKVCKFFAILVYNLIYVEKISFLVACRVETSEITGYASFCCNHTKAHLFSKLAFCYISFVCVYGITCLYTLYWLFHRPLKEYSFRSVREETGMNDIPDVKNDFAFMLHLIDQYDSLYSKRFAVFLSEVSESRLKQLNLNHEWTPEKLRQKLQRNMRGRLELSLCMLPGLPDTVFELSEVEALRLEAICDISFPPGLSQLVNLQELSLLHSPARLPFSSQIFLRDRLKVICVKFEELREVPLWVFGLRGLEELHLEGLFPPEMARGATLESLRELKQLKVLSLRSNAGKVPASVTDVAGHLQRLSLHNDGARLLALNSLKKLAVLRELELVACGLERIPHAIFSLGALQELDLKDNHLRSIEEILSFQHCRKLVTLRLWHNQIAYVPEHVRKLRSLEQLYLSHNKLETLPTQLGQCFGLRLLDLSHNGLRSLPPELGLLQSLQHLALSYNALESLPDELFFCHKLRTLLLGYNHLTQLSPDVAALQALSRLELKGNRLETLPEELGDCKGLKKSGLLVEDTLYEGLPAEVREKMEEE", "sequence_length": 795, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "de5cf8e3617c38c34f85b7b60763bd3fab8d2bf975ec2fa8a2b21563d8b90691", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q66JT1.json", "taxon_id": "10090", "uniprot_accession": "Q66JT1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/volume-sensitive-anion-channel-activity-go0005225.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0005225", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/volume-sensitive-anion-channel-activity-go0005225.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/lrrc8-pannexin-like-tm-region-ipr021040.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021040", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lrrc8-pannexin-like-tm-region-ipr021040.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pannexin-like-pf12534.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12534", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pannexin-like-pf12534.yaml" } ], "pfam_ids": [ "PF00560", "PF12534", "PF13855" ], "protein_name": "Volume-regulated anion channel subunit LRRC8E", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIPVAEFKQFTEQQPAFKVLKPWWDVLAEYLTVAMLMIGVFGCTLQVTQDKIICLPNHELQENLSEAPCQQLLPRGIPEQIGALQEVKGLKNNLDLQQYSFINQLCYETALHWYAKYFPYLVVIHTLIFMVCTSFWFKFPGTSSKIEHFISILGKCFDSPWTTRALSEVSGENQKGPAATERAAATIVAMAGTGPGKAGEGEKEKVLAEPEKVVTEPPVVTLLDKKEGEQAKALFEKVKKFRMHVEEGDILYTMYIRQTVLKVCKFLAILVYNLVYVEKISFLVACRVETSEVTGYASFCCNHTKAHLFSKLAFCYISFVCIYGLTCIYTLYWLFHRPLKEYSFRSVREETGMGDIPDVKNDFAFMLHLIDQYDSLYSKRFAVFLSEVSESRLKQLNLNHEWTPEKLRQKLQRNAAGRLELALCMLPGLPDTVFELSEVESLRLEAICDITFPPGLSQLVHLQELSLLHSPARLPFSLQVFLRDHLKVMRVKCEELREVPLWVFGLRGLEELHLEGLFPQELARAATLESLRELKQLKVLSLRSNAGKVPASVTDVAGHLQRLSLHNDGARLVALNSLKKLAALRELELVACGLERIPHAVFSLGALQELDLKDNHLRSIEEILSFQHCRKLVTLRLWHNQIAYVPEHVRKLRSLEQLYLSYNKLETLPSQLGLCSGLRLLDVSHNGLHSLPPEVGLLQNLQHLALSYNALEALPEELFFCRKLRTLLLGDNQLSQLSPHVGALRALSRLELKGNRLEALPEELGNCGGLKKAGLLVEDTLYQGLPAEVRDKMEEE", "sequence_length": 796, "sequence_origin": "UNIPROT_FETCH", 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"NOT_IN_REGISTRY", "reviewed": true, "sequence": "MITLTELKCLADAQSSYHILKPWWDVFWYYITLIMLLVAVLAGALQLTQSRVLCCLPCKVEFDNHCAVPWDILKASMNTSSNPGTPLPLPLRIQNDLHRQQYSYIDAVCYEKQLHWFAKFFPYLVLLHTLIFAACSNFWLHYPSTSSRLEHFVAILHKCFDSPWTTRALSETVAEQSVRPLKLSKSKILLSSSGCSADIDSGKQSLPYPQPGLESAGIESPTSSVLDKKEGEQAKAIFEKVKRFRMHVEQKDIIYRVYLKQIIVKVILFVLIITYVPYFLTHITLEIDCSVDVQAFTGYKRYQCVYSLAEIFKVLASFYVILVILYGLTSSYSLWWMLRSSLKQYSFEALREKSNYSDIPDVKNDFAFILHLADQYDPLYSKRFSIFLSEVSENKLKQINLNNEWTVEKLKSKLVKNAQDKIELHLFMLNGLPDNVFELTEMEVLSLELIPEVKLPSAVSQLVNLKELRVYHSSLVVDHPALAFLEENLKILRLKFTEMGKIPRWVFHLKNLKELYLSGCVLPEQLSTMQLEGFQDLKNLRTLYLKSSLSRIPQVVTDLLPSLQKLSLDNEGSKLVVLNNLKKMVNLKSLELISCDLERIPHSIFSLNNLHELDLRENNLKTVEEIISFQHLQNLSCLKLWHNNIAYIPAQIGALSNLEQLSLDHNNIENLPLQLFLCTKLHYLDLSYNHLTFIPEEIQYLSNLQYFAVTNNNIEMLPDGLFQCKKLQCLLLGKNSLMNLSPHVGELSNLTHLELIGNYLETLPPELEGCQSLKRNCLIVEENLLNTLPLPVTERLQTCLDKC", "sequence_length": 803, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": 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"ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gphr-n-pf12537.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12537", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gphr-n-pf12537.yaml" } ], "pfam_ids": [ "PF12430", "PF12537" ], "protein_name": "Golgi pH regulator B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFLIDSSIMITSQILFFGFGWLFFMRQLFKDYEIRQYVVQVIFSVTFAFSCTMFELIIFEILGVLNSSSRYFHWKMNLCVILLILVFMVPFYIGYFIVSNIRLLHKQRLLFSCLLWLTFMYFFWKLGDPFPILSPKHGILSIEQLISRVGVIGVTLMALLSGFGAVNCPYTYMSYFLRNVTDTDILALERRLLQTMDMIISKKKRMAMARRTMFQKGEVHNKPSGFWGMIKSVTTSASGSENLTLIQQEVDALEELSRQLFLETADLYATKERIEYSKTFKGKYFNFLGYFFSIYCVWKIFMATINIVFDRVGKTDPVTRGIEITVNYLGIQFDVKFWSQHISFILVGIIIVTSIRGLLITLTKFFYAISSSKSSNVIVLLLAQIMGMYFVSSVLLIRMSMPLEYRTIITEVLGELQFNFYHRWFDVIFLVSALSSILFLYLAHKQAPEKQMAP", "sequence_length": 455, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "00170e66146791f9baeb3a7aa19aed407ccfde16e32bb2fa0ad451b0045c91fc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0CG08.json", "taxon_id": "9606", "uniprot_accession": "P0CG08", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/abscisic-acid-g-protein-coupled-receptor-like-domain-ipr025969.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/abscisic-acid-g-protein-coupled-receptor-like-domain-ipr025969.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/golgi-ph-regulator-conserved-domain-ipr022535.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022535", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/golgi-ph-regulator-conserved-domain-ipr022535.yaml" } ], "pfam_ids": [ "PF12430", "PF12537" ], "protein_name": "Uncharacterized protein YHR078W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEALIVFIVLSVSGAFAYKCSYERLWFKVGSLFDIISTSSKKNVIPLASKMEVGSNEDVSSMGNFINKFYTEYSLPSHKVLQSLRVLFSLAMMTYTVTIEIILWQIKVAGMDKEVTFITTWVWPLTAIMLSFILILFQPFFIIISLLNKFYNDKFDIDRLIIVTCIILSTLIALLSYINIGPFQYTKNILTRLSIGGVTVMASLSGLATVSSLYYNFLVIWHKFRNTPMSDPSFRNINNSNNNSKSLLWTTDAYIEEKIQDYEHNIEQNVQILRSLEEEVGENSTFKAELMEKIAWYQLELGKLEALLQQSPQVRTFKKAFEVGFIIYCLHKLIITFLKRIPYIIYHSLKYPDDYDYENFSENAASDPLAITIANILDFSFFRFNYQHDLDSLTKQISLFLSISLFLCCLSAVNTTISYVVTLLPIKFQILALFAMQNDDTANVLPEYTNNSSYKGKKRNYSQEQKGISLIKNLVVSELTGVYVLATTLMVRSHLPFEVSQRLKELLGGKFTVPNIVIDSWFDEVYAFACVFTFICIRIAERKLSTKKVSVE", "sequence_length": 552, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f7125c328d182bc9c401beb86d914bd3fbd1f27e12e64e2855c014667cdb531b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38799.json", "taxon_id": "559292", "uniprot_accession": "P38799", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/abscisic-acid-binding-go0010427.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/abscisic-acid-binding-go0010427.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/abscisic-acid-g-protein-coupled-receptor-like-domain-ipr025969.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/abscisic-acid-g-protein-coupled-receptor-like-domain-ipr025969.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/golgi-ph-regulator-conserved-domain-ipr022535.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022535", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/golgi-ph-regulator-conserved-domain-ipr022535.yaml" } ], "pfam_ids": [ "PF12430", "PF12537" ], "protein_name": "GPCR-type G protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGYGWGIFEGMLVIGSLCLLGSAGLWFLNRRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVLFEIIPVLSREARMVNWKVDLFCLIVLLVFMLPYYHCYLMLRNTGVRRERAAVGALLFLTAFLYAFWRMGIHFPMPSDKGFFSMPQLVSRIGVIGVTLMAVLSGFGAVNLPYSYISLFIREIEESEIKSLERQLMQSMETCIAKKKKILLCQVEVERSLVSEEHQKGKSFFRRFVGTVVRSVQDDQKEQDIKLMEAEVEGLEELSKQLFLEIYELRQAKDAAAFSRTWKGHVQNFLGYACSIYCVYKMLKSLQSVVFKEAGTKDPVTMMISIFLQFFDIGVDAALLSQYISLLFIGMLIVISVRGFLTNLMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFLSSILLIRKSLRNEYRGIITDVLGGDIQFDFYHRWFDAIFVASAFLSLLLLSAHYTSRQIDKHPID", "sequence_length": 467, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bcae8be9b9188ffeeacb17cadeef518ee0d22cd1e61fdcf95e2d745a8298703c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q0WQG8.json", "taxon_id": "3702", "uniprot_accession": "Q0WQG8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/abscisic-acid-g-protein-coupled-receptor-like-domain-ipr025969.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/abscisic-acid-g-protein-coupled-receptor-like-domain-ipr025969.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/golgi-ph-regulator-conserved-domain-ipr022535.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022535", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/golgi-ph-regulator-conserved-domain-ipr022535.yaml" } ], "pfam_ids": [ "PF12430", "PF12537" ], "protein_name": "Golgi pH regulator", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFLIDSSIMITSQILFFGFGWLFFMRQLFKDYEVRQYVVQVIFSVTFAFSCTMFELIIFEILGVLNSSSRYFHWKLNLCVILLILVFMVPFYIGYFIVSNIQLLHKQRLLFSCLLWLTFMYFFWKLGDPFPILSPKHGILSIEQLISRVGVIGVTLMALLSGFGAVNCPYTYMSYFLRNVTDTDILALERRLLQTMDMIISKKKRMAVARRTMFQRGDVQNKPSGLWGMLKSVTASAPGSENLTLIQQEVDALEELSRQLFLETADLYATKERIEYSKTFKGKYFNFLGYFFSIYCVWKIFMATINIVLDRVGKTDPVTRGIEITVNYLGIQFDVKFWSQHISFILVGIIIVTSIRGLLITLTKFFYAISSSKSSNVIVLLLAQIMGMYFVSSVLLIRMSMPPEYRTIITEVLGELQFNFYHRWFDVIFLVSALSSILFLYLAHKQAPEKHMAP", "sequence_length": 455, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a60cbd77dbf5c041c7ecdfa20d766d54ac498b2e38ba0b4415ab1f3062207865", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BS95.json", "taxon_id": "10090", "uniprot_accession": "Q8BS95", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/abscisic-acid-g-protein-coupled-receptor-like-domain-ipr025969.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/abscisic-acid-g-protein-coupled-receptor-like-domain-ipr025969.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/golgi-ph-regulator-conserved-domain-ipr022535.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022535", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/golgi-ph-regulator-conserved-domain-ipr022535.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/aba-gpcr-pf12430.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12430", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/aba-gpcr-pf12430.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gphr-n-pf12537.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12537", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gphr-n-pf12537.yaml" } ], "pfam_ids": [ "PF12430", "PF12537" ], "protein_name": "GPCR-type G protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSYGWAIYEGTVVIASLSLLGWAGLWFLNRRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVLFEIIPVLSREARMINWKVDLFCLILLLVFMLPYYHCYLMLRNSGVRRERASVGAFLFLSAFLYAFWRMGVHFPMPSADKGFFTMPQLVSRIGVIGVTLMAVLSGFGAVNLPYSYISLFIREIEEADIISLERQLIQSTETCIAKKKKIILCQLEVERNQGSEENQKRSSFFRRIVGTVVRSVQDDQKEQDIKILEAEVEALEELSKQLFLEVYELRQAKDAAAYSRTWKGHVQNLLGYACSIYCVYKMLKSLQSVVFKEAGTKDPVTTMISIFLRLFDIGVDAALLSQYISLLFIGMLIVISVRGFLTNLMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFLSSILLIRKSLRNEYRGIITDVLGGDIQFDFYHRWFDAIFVASAFLSLVLLSAHYTSRQSDKHAIE", "sequence_length": 468, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "667545a57ed8d127144219a8d9589d2c6e8a50320b934bbff0f856dd376e656d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9XIP7.json", "taxon_id": "3702", "uniprot_accession": "Q9XIP7", "uniprot_release": "2026_03" } ], "pfam_id": "PF12537", "short_name": "GPHR_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/genetic-suppressor-element-like-ipr022207.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022207", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/genetic-suppressor-element-like-ipr022207.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3736-pf12540.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12540", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3736-pf12540.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q14687", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12540" ], "protein_name": "Genetic suppressor element 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e1c0de91d9c629773c345d8d73143e844a080f1f6cc633b96163fb9de00776de", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKGMSHEPKSPSLGMLSTATRTTATVNPLTPSPLNGALVPSGSPATSSALSAQAAPSSSFAAALRKLAKQAEEPRGSSLSSESSPVSSPATNHSSPASTPKRVPMGPIIVPPGGHSVPSTPPVVTIAPTKTVNGVWRSESRQDAGSRSSSGGRERLIVEPPLPQEKAGGPAIPSHLLSTPYPFGLSPSSVVQDSRFPPLNLQRPVHHVVPPSTVTEDYLRSFRPYHTTDDLRMSSLPPLGLDPATAAAYYHPSYLAPHPFPHPAFRMDDSYCLSALRSPFYPIPTPGSLPPLHPSAMHLHLSGVRYPPELSHSSLAALHSERMSGLSAERLQMDEELRREREREREREREREADREREKEREREREKEREQEKEREREKERERELERQREQRAREKELLAAKALEPSFLPVAELHGLRGHATEERGKPSEQLTPTRAEKLKDAGLQAPKPVQHPLHPVPTPHHTVPSLISNHGIFSLPSSSAATALLIQRTNEEEKWLARQRRLRQEKEDRQSQVSEFRQQVLEQHLDMGRPPVPAEAEHRPESTTRPGPNRHEPGGRDPPQHFGGPPPLISPKPQLHAAPTALWNPVSLMDNTLETRRAESHSLHSHPAAFEPSRQAAVPLVKVERVFCPEKAEEGPRKREPAPLDKYQPPPPPPREGGSLEHQPFLPGPGPFLAELEKSTQTILGQQRASLPQAATFGELSGPLKPGSPYRPPVPRAPDPAYIYDEFLQQRRRLVSKLDLEERRRREAQEKGYYYDLDDSYDESDEEEVRAHLRCVAEQPPLKLDTSSEKLEFLQLFGLTTQQQKEELVAQKRRKRRRMLRERSPSPPTIQSKRQTPSPRLALSTRYSPDEMNNSPNFEEKKKFLTIFNLTHISAEKRKDKERLVEMLRAMKQKALSAAVADSLTNSPRDSPAVSLSEPATQQASLDVEKPVGVAASLSDIPKAAEPGKLEQVRPQELSRVQELAPASGEKARLSEAPGGKKSLSMLHYIRGAAPKDIPVPLSHSTNGKSKPWEPFVAEEFAHQFHESVLQSTQKALQKHKGSVAVLSAEQNHKVDTSVHYNIPELQSSSRAPPPQHNGQQEPPTARKGPPTQELDRDSEEEEEEDDEDGEDEEEVPKRKWQGIEAVFEAYQEHIEEQNLERQVLQTQCRRLEARHYSLSLTAEQLSHSVAELRSQKQKMVSERERLQAELDHLRKCLALPAMHWPRGYLKGYPR", 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"link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mozart1-pf12554.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12554", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mozart1-pf12554.yaml" } ], "pfam_ids": [ "PF12554" ], "protein_name": "Mitotic-spindle organizing protein 1A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDEEASRTARESLELVFRMSNILDTGLDRHTLSVLIALCDLGVNPEALATVVKELRRESIPDSVTTTPSIH", "sequence_length": 71, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "98220117376c0619a41b2b9eb8f0fa692c6d05b13f98d22f29a4e2890013cdb4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M0N8.json", "taxon_id": "3702", "uniprot_accession": "Q9M0N8", "uniprot_release": "2026_03" } ], "pfam_id": "PF12554", "short_name": "MOZART1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain COL)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3744-pf12558.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12558", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3744-pf12558.yaml" } ], "pfam_ids": [ "PF00005", "PF12558" ], "protein_name": "Putative ABC transporter ATP-binding protein SACOL2708", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTEPIISFKDFSFQYHSQATPTLQNINVDIYPGEKVLVVGASGSGKSTFANCINGLIPFKTKGNITGELYINNQDATVSCLHDRSNVVGTVLQDTDGQFIGLTAAEDMAFLLENNCVEQDDMKKNVSYWAEKVGMIEHLNHRPQDLSGGQKQRVSLGGILIHRTPILILDEPLANLDPATGHETLRLLNNIHEETKSTMIIVEHRLEESLDDTFDRVLLFKDGKIIANTTPSDLLKSSKLKEAGIREPLYCTALKYAEVDVESIDNLANLRDVCMSEHVKFKVKKWIDETSANNDNKYKSEPLLELNEVCVQYSDYSNSVLNNVQLNVYRREMLSIVGHNGAGKSTLAKAICGFLDITGNIQFCNRGFNQLSISERSEFVGYVMQNPNHMISEKMIYDEVALGLRARGMKESDIKIRVENVLKICGLYAFRNWPIAALSYGQKKRVTIASVLVLNPEIIILDEPTAGQDFYHYNEIMSFLIELNRQGKTIIMITHDMHLLSEYSSRTVVLSKGQVVADTTPVLVLNDKKICEIASLRQTSLFEMAEYIGISEPQKLVQLFINHDRKVRRQ", "sequence_length": 570, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a3605c0d8075d6f6f49128d5a90146bbea33448b00f1a2a2269308a042d41fb4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5HCL3.json", "taxon_id": "93062", "uniprot_accession": "Q5HCL3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Photobacterium profundum (strain SS9)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3744-pf12558.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12558", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3744-pf12558.yaml" } ], "pfam_ids": [ "PF00005", "PF12558" ], "protein_name": "Putative ABC transporter ATP-binding protein PBPRA2240", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIEFSNFTFKYWALEKPTLKNINLTIGKGEKVVIVGPSGSGKSTLGQCLNGLIPFAVKGDCSGSLKINGKDTKSLDLHQCTNIVGTVLQDTDGQFVGLSVGEDIAFALENQMVIQEDMHTIVKDTAKMVELDDILDVSPFDLSGGQKQRVSLAGVMVDDVDILLFDEPLASLDPKTGKAAIDIIDHLHRDTGKTVIIIEHRLEDVLHRPVDRIIMMEQGEIVANMTPDQLIASDLLEQHGIREPLYISALKAAGCQITEDDKPAYFSTLNLDKFKPQIENWYHQSFVACTPENSERLLTVNNLSYSYDGIKNTLDDVSFHINKGEFVSILGKNGSGKSTITRLIMGVLEPDTGSIFMNGQDLAQSSIFERSQKIGIVLQNPNHMISHHMIFDEIASGLRNRGINEATVERKVFDILELCGLKKYRHWPIDALSYGQKKRVTIATILVLEPELLILDEPTAGQDYHHYTLMMEFVRELNRKLGITILIISHDMHLVLEYTQRAIVIANSQLLADAPVNTIFSQPALLEKANLTVTSLYSLAHAMGIERIDNFIHCFIEHEAKNK", "sequence_length": 564, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fcb3f3d84995ddae866d9f082020e229120a459ef3d334a6fdefb1ad3434840e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6LQ00.json", "taxon_id": "298386", "uniprot_accession": "Q6LQ00", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus agalactiae serotype III (strain NEM316)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3744-pf12558.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12558", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3744-pf12558.yaml" } ], "pfam_ids": [ "PF00005", "PF12558" ], "protein_name": "Putative ABC transporter ATP-binding protein gbs1680", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKDFIEWKDFTFQYDVQSEPTLKGINLSIPKGEKVLILGPSGSGKSTLGHCLNGIIPNTHKGQYSGIFTINHKNAFDLSIYDKSHLVSTVLQDPDGQFIGLTVAEDIAFALENDVVAQEEMTSIVEMWAKRLEIAPLLSKRPQDLSGGQKQRVSLAGVLVDDSPILLFDEPLANLDPQSGQDIMALVDRIHQEQDATTIIIEHRLEDVLYERVDRVVLFSDGQIIYNGEPDQLLKTNFLSEYGIREPLYISALKNLGYDFEKQNTMTSIDDFDFSELLIPKMRALDLDKHTDKLLSVQHLSVSYDLENNTLDDVSFDLYKGQRLAIVGKNGAGKSTLAKALCQFIPNNATLIYNNEDVSQDSIKERAERIGYVLQNPNQMISQAMVFDEVALGLRLRGFSDNDIESRVYDILKVCGLYQFRNWPISALSFGQKKRVTIASILILNPEVIILDEPTAGQDMKHYTEMMSFLDKLSCDGHSIVMITHDMQLMLEYTDRAIVIDNGLIAADDHPINILSNTELLKKTHLKKTSLFALADRLGISPQKLTQWYIDNQGGKNG", "sequence_length": 558, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "18d7537c8b531a33762e13499bef72acb3e843c1dd2de6f3a52085f23026df68", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8E3S6.json", "taxon_id": "211110", "uniprot_accession": "Q8E3S6", "uniprot_release": "2026_03" } ], "pfam_id": "PF12558", "short_name": "DUF3744", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rag1-imp-bd-pf12560.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12560", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rag1-imp-bd-pf12560.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P15918", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00097", "PF10426", "PF12560", "PF12940", "PF26024", "PF26025", "PF26100", "PF26101", "PF26104", "PF26105" ], "protein_name": "V(D)J recombination-activating protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e33687243bf026052f04e3d2044f8322efd69f50449fffe3ec5417b9ce0a5064", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLEQSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRADEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCWSIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVLDQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHILADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPAKECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKAFADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLSCSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDGLSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKESCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCLMLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEGLEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVKGVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHLRKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSCPAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWASEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMNPQASLGDPLGIEDSLESQDSMEF", "sequence_length": 1043, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e33687243bf026052f04e3d2044f8322efd69f50449fffe3ec5417b9ce0a5064", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P15918.json", "taxon_id": "9606", "uniprot_accession": "P15918", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rag1-imp-bd-pf12560.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12560", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rag1-imp-bd-pf12560.yaml" } ], "pfam_ids": [ "PF00097", "PF10426", "PF12560", "PF12940", "PF26024", "PF26025", "PF26100", "PF26101", "PF26104", "PF26105" ], "protein_name": "V(D)J recombination-activating protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAASLPSTLSFSSAPDEIQHPQIKFSEWKFKLFRVRSFEKAPEEAQKEKDSSEGKPYLEQSPVVPEKPGGQNSILTQRALKLHPKFSKKFHADGKSSDKAVHQARLRHFCRICGNRFKSDGHSRRYPVHGPVDAKTQSLFRKKEKRVTSWPDLIARIFRIDVKADVDSIHPTEFCHDCWSIMHRKFSSSHSQVYFPRKVTVEWHPHTPSCDICFTAHRGLKRKRHQPNVQLSKKLKTVLNHARRDRRKRTQARVSSKEVLKKISNCSKIHLSTKLLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEEVSLEKYNHHVSSHKESKETLVHINKGGRPRQHLLSLTRRAQKHRLRELKIQVKEFADKEEGGDVKAVCLTLFLLALRARNEHRQADELEAIMQGRGSGLQPAVCLAIRVNTFLSCSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHPFEWQPPLKNVSSRTDVGIIDGLSGLASSVDEYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKESCDGMGDVSEKHGSGPAVPEKAVRFSFTVMRITIEHGSQNVKVFEEPKPNSELCCKPLCLMLADESDHETLTAILSPLIAEREAMKSSELTLEMGGIPRTFKFIFRGTGYDEKLVREVEGLEASGSVYICTLCDTTRLEASQNLVFHSITRSHAENLQRYEVWRSNPYHESVEELRDRVKGVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKHPNASKEERKRWQATLDKHLRKRMNLKPIMRMNGNFARKLMTQETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSCPAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWASEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKSSGFTMNSKETLGDPLGIEDSLESQDSMEF", "sequence_length": 1040, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "294dba89b7f529d3b90d34157cc9ed5040c0d16ce84d03b0fda56b8bc028cb8e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P15919.json", "taxon_id": "10090", "uniprot_accession": "P15919", "uniprot_release": "2026_03" } ], "pfam_id": "PF12560", "short_name": "RAG1_imp_bd", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12562", "short_name": "Pox_I6_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12565", "short_name": "DUF3747", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/galacturonate-catabolic-process-go0046397.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0046397", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/galacturonate-catabolic-process-go0046397.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tolb-like-beta-propeller-domain-ipr011659.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011659", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tolb-like-beta-propeller-domain-ipr011659.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf3748-pf12566.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12566", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf3748-pf12566.yaml" } ], "pfam_ids": [ "PF12566" ], "protein_name": "Uncharacterized protein YidR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGPVLYQDRAMKQITFAPRNHLLTNTNTWTPDSQWLVFDVRPSGASFTGETIERVNIHTGEVEVIYRASQGAHVGVVTVHPKSEKYVFIHGPENPDETWHYDFHHRRGVIVEGGKMSNLDAMDITAPYTPGVLRGGSHVHVFSPNGERVSFTYNDHVMHELDPALDLRNVGVAAPFGPVNVQKQHPREYSGSHWCVLVSKTTPTPQPGSDEINRAYEEGWVGNHALAFIGDTLSPKGEKVPELFIVELPQDEAGWKAAGDAPLSGTETTLPAPPRGVVQRRLTFTHHRAYPGLVNVPRHWVRCNPQGTQIAFLMRDDNGIVQLWLISPQGGEPRQLTHNKTDIQSAFNWHPSGEWLGFVLDNRIACAHAQSGEVEYLTEHHANSPSADAVVFSPDGQWLAWMEGGQLWITETDR", "sequence_length": 415, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "603d0d2460afcbad100db99798f635148001777dff50903b341473125f593c33", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P31455.json", "taxon_id": "83333", "uniprot_accession": "P31455", "uniprot_release": "2026_03" } ], "pfam_id": "PF12566", "short_name": "DUF3748", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/aspartate-1-decarboxylase-autocleavage-activator-panm-nf033213.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF033213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/aspartate-1-decarboxylase-autocleavage-activator-panm-nf033213.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/panz-acetyltransferase-gnat-domain-ipr040448.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040448", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/panz-acetyltransferase-gnat-domain-ipr040448.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/panz-pf12568.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12568", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/panz-pf12568.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P37613", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12568" ], "protein_name": "PanD regulatory factor", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "50404d3487eeb0b88c7fc4276c0b596adfa288590f621b2cd422225ff2203f35", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKLTIIRLEKFSDQDRIDLQKIWPEYSPSSLQVDDNHRIYAARFNERLLAAVRVTLSGTEGALDSLRVREVTRRRGVGQYLLEEVLRNNPGVSCWWMADAGVEDRGVMTAFMQALGFTAQQGGWEKC", "sequence_length": 127, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "50404d3487eeb0b88c7fc4276c0b596adfa288590f621b2cd422225ff2203f35", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37613.json", "taxon_id": "83333", "uniprot_accession": "P37613", "uniprot_release": "2026_03" } ], "pfam_id": "PF12568", "short_name": "PanZ", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12570", "short_name": "DUF3750", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage P2", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/phage-fiber-2-pf03406.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03406", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/phage-fiber-2-pf03406.yaml" } ], "pfam_ids": [ "PF03406", "PF12571", "PF21446" ], "protein_name": "Probable tail fiber protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSIKFRTVITTAGAAKLAAATAPGRRKVGITTMAVGDGGGKLPVPDAGQTGLIHEVWRHALNKISQDKRNSNYIIAELVIPPEVGGFWMRELGLYDDAGTLIAVANMAESYKPALAEGSGRWQTCRMVIIVSSVASVELTIDTTTVMATQDYVDDKIAEHEQSRRHPDASLTAKGFTQLSSATNSTSETLAATPKAVKAAYDLANGKYTAQDATTARKGLVQLSSATNSTSETLAATPKAVKTVMDETNKKAPLNSPALTGTPTTPTARQGTNNTQIANTAFVMAAIAALVDSSPDALNTLNELAAALGNDPNFATTMTNALAGKQPKDATLTALAGLATAADRFPYFTGNDVASLATLTKVGRDILAKSTVAAVIEYLGLQETVNRAGNAVQKNGDTLSGGLTFENDSILAWIRNTDWAKIGFKNDADGDTDSYMWFETGDNGNEYFKWRSRQSTTTKDLMTLKWDALNILVNAVINGCFGVGTTNALGGSSIVLGDNDTGFKQNGDGILDVYANSQRVFRFQNGVAIAFKNIQAGDSKKFSLSSSNTSTKNITFNLWGASTRPVVAELGDEAGWHFYSQRNTDNSVIFAVNGQMQPSNWGNFDSRYVKDVRLGTRVVQLMARGGRYEKAGHTITGLRIIGEVDGDDEAIFRPIQKYINGTWYNVAQV", "sequence_length": 669, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c8364d1c26e9b7cf798dc5c2bcfa97d52f1a6b67448d9da534ae1c820c5ba0e8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P26700.json", "taxon_id": "2905681", "uniprot_accession": "P26700", "uniprot_release": "2026_03" } ], "pfam_id": "PF12571", "short_name": "Phage_tail_fib", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3752-pf12572.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3752-pf12572.yaml" } ], "pfam_ids": [ "PF12572" ], "protein_name": "GPALPP motifs-containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARDLIGPALPPGFKAGGSAEDEERDSSPVAGPALPPNYKSSSSESSDSDEDSSSLSEEGNQESEEDDTGPPARKLRRNQDDDDDDDDEGFFGPALPPGFKKQDDSPPRPMIGPALPPGFLKSTQKSDEGRSDPGQVSSDFNSEKETDSSEEEDIVGPMPAKGPVNSSVTAEFEKRAQRMKEKLTKGDDDSSKPITRESWMTELPPEMKDFGLGPRTFKRRADGKSGDRSVWTDTPADRERKAKVRGLVCSCISVHVGSILKKNRRQNYSRVLFLSL", "sequence_length": 277, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b880334a00aa1de5e92709fe73a0f049b50c4fd775ea83b89887542fc291016a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3ZBM6.json", "taxon_id": "9913", "uniprot_accession": "Q3ZBM6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3752-pf12572.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3752-pf12572.yaml" } ], "pfam_ids": [ "PF12572" ], "protein_name": "GPALPP motifs-containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARDLIGPALPPGFKERATVEDQERDPSPVAGPALPPNYRSSSSDSSDSNEDSSSLSEEGNQESEEDDAGPTAKKQRRNQDRDDDDDDDGFFGPALPPGFKKQDDSPPRPIIGPALPPGFIKSPQKNDKGRENPGQVSPFFNSEEAESGEDEDIVGPMPAKGPVDYSVTAEFEKRAQRMKEKLTKGDDDSPKPVTRESWMTELPPEMKDFGLGPRTFKRRADDKSGDRSVWTDTPADRERKAKEIQEARKSLSKKDEENMLSGRDKRLAEQVSSYNESKRSESLMDIHHKRLKTKAAEDKNRHQERTPFDRDKDLKVNRFDEAQKKALIKKSRELNTRFSHGKGNMFL", "sequence_length": 348, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8434ab092f2abee6eb5893f1d49b714e882ce36b7ae983388e4cd49ac0820bb1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4V893.json", "taxon_id": "10116", "uniprot_accession": "Q4V893", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3752-ipr022226.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022226", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3752-ipr022226.yaml" } ], "pfam_ids": [ "PF12572" ], "protein_name": "GPALPP motifs-containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARDLIGPALPPGFKEHATVEDEERDPSPVAGPALPPNYRSCSSDSSDSDEDSSSLSEEGNQESEEEDTGPNAKKQRRNQDDDDDDDGFFGPALPPGFKKQDDSPPRPIIGPALPPGFIKSPQKNDKGREDPGQVSSFFNSEEAESGEDEDIVGPMPAKGPVNYSVTTEFEKRAQRMKEKLTKGDDDSSKPITRESWMTELPPEMKEFGLGPRTFKRRADDKSGDRSVWTDTPADRERKAKEIQEARKSFSKKDEENILSGRDKRLAEQVSSYNESKRSESLMDIHHKKLKSKAAEDKNKHQERIPFDRDKDLKVNRFDEAQKKALIKKSRELNTRFSHGKGNMFL", "sequence_length": 346, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a595fe0e3e0eb03fc7ad01611d1c19aa5a2664760a6610d6bd8023e2c90acf10", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q69ZC8.json", "taxon_id": "10090", "uniprot_accession": "Q69ZC8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3752-ipr022226.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022226", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3752-ipr022226.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3752-pf12572.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3752-pf12572.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8IXQ4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12572" ], "protein_name": "GPALPP motifs-containing protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f21603dd210ed08069ca9f26b3edc653013acb983d68308251cdc2e1b78c7b93", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MARDLIGPALPPGFKARGTAEDEERDPSPVAGPALPPNYKSSSSDSSDSDEDSSSLYEEGNQESEEDDSGPTARKQRKNQDDDDDDDDGFFGPALPPGFKKQDDSPPRPIIGPALPPGFIKSTQKSDKGRDDPGQQETDSSEDEDIIGPMPAKGPVNYNVTTEFEKRAQRMKEKLTKGDDDSSKPIVRESWMTELPPEMKDFGLGPRTFKRRADDTSGDRSIWTDTPADRERKAKETQEARKSSSKKDEEHILSGRDKRLAEQVSSYNESKRSESLMDIHHKKLKSKAAEDKNKPQERIPFDRDKDLKVNRFDEAQKKALIKKSRELNTRFSHGKGNMFL", "sequence_length": 340, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f21603dd210ed08069ca9f26b3edc653013acb983d68308251cdc2e1b78c7b93", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IXQ4.json", "taxon_id": "9606", "uniprot_accession": "Q8IXQ4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3752-ipr022226.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022226", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3752-ipr022226.yaml" } ], "pfam_ids": [ "PF12572" ], "protein_name": "Uncharacterized protein F26A3.7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSYGPQLPAFLMKGQIKENEVDDEAEEGAPQVYGPVIPGMEEPKNEKEKHDDQEETSVFGPSIPKEVREKLQNVENPAEDDEEDEEFPSQSYGPSIPSNFRPTVGPSIPGTFGDDSDEDIGPMPVAKGDEEKEAIDRAYRMVLQKEAEDDEKNFQPKREEWMTSVPKKLGNFGLGARTFKKGTTSERDASWEDAPGAKKRRNEETRSARSVGIAAADARQAAIVAEKTSGPSLLEIHQKKRDEKVKDAGYAQGERRPFDREKDMEVRGLKPGGSKEAVDRMKEFADRFANSKDQRFL", "sequence_length": 297, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "df6875a8157ab5b87221e1d88a394115ce4900b5e47aa5ad7173236d1f89a4f8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q93591.json", "taxon_id": "6239", "uniprot_accession": "Q93591", "uniprot_release": "2026_03" } ], "pfam_id": "PF12572", "short_name": "DUF3752", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12575", "short_name": "Pox_EPC_I2-L1", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3754-pf12576.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12576", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3754-pf12576.yaml" } ], "pfam_ids": [ "PF12576" ], "protein_name": "Transmembrane protein 143", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLHVTRGVWGSIVRVWPLLPSFLGHSRALSSLEAKMGEYRKMWNPTEPRDWAQQYRERHIPFSKEQLLRLLIQEFHSTPAEKAALEEFTAHVDFCTLFHYHHVLTQLQALYDPINPDRETLDQPSLTDPQRLSNEKEVLQALEPLLAQANFSPLTEDTLAYALVVHHPQDEVQVTINLDQYIYMHFWALGQRVGKMPRKSSVGSKRFFFKSPPAERRYFKRVILAARTKKGHLVLKSFKDTPLEGLEQLLPELKVRTSTLQRAILNVTLIVSGVVFFVNVGMVVLSDLKMATSLLLLLFAAFMGLRAAKMFGHRRSAQALELAHMLYYRSTSNNAELLSALVLRAQDEHTKETLLAHSFLARRPGGAKGPPEETSQWLQSEVENWLLAQSGCDVAFNGKRALAHLQALPPTVGMYPPPGLPKLDLLATLSSPKSAPSDDNSLEKPLGPAQPSHLVGN", "sequence_length": 457, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79b9b6c5841f1c5adafa6db2c91443708e7eb64acd1949866a80e6571c7ffa0f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q32PH2.json", "taxon_id": "9913", "uniprot_accession": "Q32PH2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3754-pf12576.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12576", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3754-pf12576.yaml" } ], "pfam_ids": [ "PF12576" ], "protein_name": "Transmembrane protein 143", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVARWLRLWERGQAMLHVTWGSKVRLWSLVPALLGTPRALSSLENRMGVYRKMWNPKEPCDWAQQYRERFIPFSKEQLLRLLIQEFHSSPAERAALEAFSAHVDFCTLFHYHQLLARLQALYDPINPDRETLDQPSLTDPERLSSEKDVLQALRPLLAQANFSPLSEDALAYALVVHHPQDEVQVTINLDQYIYIQFWALGQRVGQMPHKSSVGSKRGFFRKLPPVERRYFKRVVLAARTKGGHLVLKSFKDTPLEGLEQLLPELKVRTPVLQRALLNLMLVVSGVMIFVNVGMVILSDLKMATSLLLLLFAAFMGVKASKVFGQRRSAQALELAHVLYYRSTSNNSELLSALALRAQEEHIKEALLAHSFLARRPGGSQGKPEETSRWLQSEVESWLLAQSGCDVTFNGPRALAHLQALTPSLGLFPLPELPQLDPMVLGTPEATQAALGSSYPSP", "sequence_length": 458, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e746d9cfa90cd20c9227da5038dab2e8779343d868b2aea486d7065bd78a5d9a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VD26.json", "taxon_id": "10090", "uniprot_accession": "Q8VD26", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3754-pf12576.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12576", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3754-pf12576.yaml" } ], "pfam_ids": [ "PF12576" ], "protein_name": "Transmembrane protein 143", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVELWLRLRGKGLAMLHVTRGVWGSRVRVWPLLPALLGPPRALSSLAAKMGEYRKMWNPREPRDWAQQYRERFIPFSKEQLLRLLIQEFHSSPAEKAALEAFSAHVDFCTLFHYHQILARLQALYDPINPDRETLDQPSLTDPQRLSNEQEVLRALEPLLAQANFSPLSEDTLAYALVVHHPQDEVQVTVNLDQYVYIHFWALGQRVGQMPLKSSVGSRRGFFTKLPPAERRYFKRVVLAARTKRGHLVLKSFKDTPLEGLEQLLPELKVRTPTLQRALLNLMLVVSGVAIFVNVGMVVLTDLKVATSLLLLLFAIFMGLRASKMFGQRRSAQALELAHMLYYRSTSNNSELLSALALRAQDEHTKEALLAHSFLARRPGGTQGSPEETSRWLRSEVENWLLAKSGCEVTFNGTRALAHLQALTPSMGLYPPPGFPKLDPVAPITSEPPQATPSSNIS", "sequence_length": 459, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e954bcb843b68d7ed3c3c644adeb36b9c6db2d4e09a8d93e3e276dec311c591d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96AN5.json", "taxon_id": "9606", "uniprot_accession": "Q96AN5", "uniprot_release": "2026_03" } ], "pfam_id": "PF12576", "short_name": "DUF3754", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12579", "short_name": "DUF3755", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Equine arteritis virus (strain Bucyrus)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/arteri-nsp7a-pf16749.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16749", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/arteri-nsp7a-pf16749.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ifr3-antag-pf14754.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14754", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ifr3-antag-pf14754.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3756-pf12581.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12581", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3756-pf12581.yaml" } ], "pfam_ids": [ "PF00680", "PF01443", "PF05412", "PF05579", "PF12581", "PF14754", "PF14755", "PF16749", "PF17873", "PF17977", "PF19215", "PF22049" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATFSATGFGGSFVRDWSLDLPDACEHGAGLCCEVDGSTLCAECFRGCEGMEQCPGLFMGLLKLASPVPVGHKFLIGWYRAAKVTGRYNFLELLQHPAFAQLRVVDARLAIEEASVFISTDHASAKRFPGARFALTPVYANAWVVSPAANSLIVTTDQEQDGFCWLKLLPPDRREAGLRLYYNHYREQRTGWLSKTGLRLWLGDLGLGINASSGGLKFHIMRGSPQRAWHITTRSCKLKSYYVCDISEADWSCLPAGNYGGYNPPGDGACGYRCLAFMNGATVVSAGCSSDLWCDDELAYRVFQLSPTFTVTIPGGRVCPNAKYAMICDKQHWRVKRAKGVGLCLDESCFRGICNCQRMSGPPPAPVSAAVLDHILEAATFGNVRVVTPEGQPRPVPAPRVRPSANSSGDVKDPAPVPPVPKPRTKLATPNPTQAPIPAPRTRLQGASTQEPLASAGVASDSAPKWRVAKTVYSSAERFRTELVQRARSVGDVLVQALPLKTPAVQRYTMTLKMMRSRFSWHCDVWYPLAVIACLLPIWPSLALLLSFAIGLIPSVGNNVVLTALLVSSANYVASMDHQCEGAACLALLEEEHYYRAVRWRPITGALSLVLNLLGQVGYVARSTFDAAYVPCTVFDLCSFAILYLCRNRCWRCFGRCVRVGPATHVLGSTGQRVSKLALIDLCDHFSKPTIDVVGMATGWSGCYTGTAAMERQCASTVDPHSFDQKKAGATVYLTPPVNSGSALQCLNVMWKRPIGSTVLGEQTGAVVTAVKSISFSPPCCVSTTLPTRPGVTVVDHALYNRLTASGVDPALLRVGQGDFLKLNPGFRLIGGWIYGICYFVLVVVSTFTCLPIKCGIGTRDPFCRRVFSVPVTKTQEHCHAGMCASAEGISLDSLGLTQLQSYWIAAVTSGLVILLVCHRLAISALDLLTLASPLVLLVFPWASVGLLLACSLAGAAVKIQLLATLFVNLFFPQATLVTMGYWACVAALAVYSLMGLRVKVNVPMCVTPAHFLLLARSAGQSREQMLRVSAAAPTNSLLGVARDCYVTGTTRLYIPKEGGMVFEGLFRSPKARGNVGFVAGSSYGTGSVWTRNNEVVVLTASHVVGRANMATLKIGDAMLTLTFKKNGDFAEAVTTQSELPGNWPQLHFAQPTTGPASWCTATGDEEGLLSGEVCLAWTTSGDSGSAVVQGDAVVGVHTGSNTSGVAYVTTPSGKLLGADTVTLSSLSKHFTGPLTSIPKDIPDNIIADVDAVPRSLAMLIDGLSNRESSLSGPQLLLIACFMWSYLNQPAYLPYVLGFFAANFFLPKSVGRPVVTGLLWLCCLFTPLSMRLCLFHLVCATVTGNVISLWFYITAAGTSYLSEMWFGGYPTMLFVPRFLVYQFPGWAIGTVLAVCSITMLAAALGHTLLLDVFSASGRFDRTFMMKYFLEGGVKESVTASVTRAYGKPITQESLTATLAALTDDDFQFLSDVLDCRAVRSAMNLRAALTSFQVAQYRNILNASLQVDRDAARSRRLMAKLADFAVEQEVTAGDRVVVIDGLDRMAHFKDDLVLVPLTTKVVGGSRCTICDVVKEEANDTPVKPMPSRRRRKGLPKGAQLEWDRHQEEKRNAGDDDFAVSNDYVKRVPKYWDPSDTRGTTVKIAGTTYQKVVDYSGNVHYVEHQEDLLDYVLGKGSYEGLDQDKVLDLTNMLKVDPTELSSKDKAKARQLAHLLLDLANPVEAVNQLNLRAPHIFPGDVGRRTFADSKDKGFVALHSRTMFLAARDFLFNIKFVCDEEFTKTPKDTLLGYVRACPGYWFIFRRTHRSLIDAYWDSMECVYALPTISDFDVSPGDVAVTGERWDFESPGGGRAKRLTADLVHAFQGFHGASYSYDDKVAAAVSGDPYRSDGVLYNTRWGNIPYSVPTNALEATACYRAGCEAVTDGTNVIATIGPFPEQQPIPDIPKSVLDNCADISCDAFIAPAAETALCGDLEKYNLSTQGFVLPSVFSMVRAYLKEEIGDAPPLYLPSTVPSKNSQAGINGAEFPTKSLQSYCLIDDMVSQSMKSNLQTATMATCKRQYCSKYKIRSILGTNNYIGLGLRACLSGVTAAFQKAGKDGSPIYLGKSKFDPIPAPDKYCLETDLESCDRSTPALVRWFATNLIFELAGQPELVHSYVLNCCHDLVVAGSVAFTKRGGLSSGDPITSISNTIYSLVLYTQHMLLCGLEGYFPEIAEKYLDGSLELRDMFKYVRVYIYSDDVVLTTPNQHYAASFDRWVPHLQALLGFKVDPKKTVNTSSPSFLGCRFKQVDGKCYLASLQDRVTRSLLYHIGAKNPSEYYEAAVSIFKDSIICCDEDWWTDLHRRISGAARTDGVEFPTIEMLTSFRTKQYESAVCTVCGAAPVAKSACGGWFCGNCVPYHAGHCHTTSLFANCGHDIMYRSTYCTMCEGSPKQMVPKVPHPILDHLLCHIDYGSKEELTLVVADGRTTSPPGRYKVGHKVVAVVADVGGNIVFGCGPGSHIAVPLQDTLKGVVVNKALKNAAASEYVEGPPGSGKTFHLVKDVLAVVGSATLVVPTHASMLDCINKLKQAGADPYFVVPKYTVLDFPRPGSGNITVRLPQVGTSEGETFVDEVAYFSPVDLARILTQGRVKGYGDLNQLGCVGPASVPRNLWLRHFVSLEPLRVCHRFGAAVCDLIKGIYPYYEPAPHTTKVVFVPNPDFEKGVVITAYHKDRGLGHRTIDSIQGCTFPVVTLRLPTPQSLTRPRAVVAVTRASQELYIYDPFDQLSGLLKFTKEAEAQDLIHGPPTACHLGQEIDLWSNEGLEYYKEVNLLYTHVPIKDGVIHSYPNCGPACGWEKQSNKISCLPRVAQNLGYHYSPDLPGFCPIPKELAEHWPVVSNDRYPNCLQITLQQVCELSKPCSAGYMVGQSVFVQTPGVTSYWLTEWVDGKARALPDSLFSSGRFETNSRAFLDEAEEKFAAAHPHACLGEINKSTVGGSHFIFSQYLPPLLPADAVALVGASLAGKAAKAACSVVDVYAPSFEPYLHPETLSRVYKIMIDFKPCRLMVWRNATFYVQEGVDAVTSALAAVSKLIKVPANEPVSFHVASGYRTNALVAPQAKISIGAYAAEWALSTEPPPAGYAIVRRYIVKRLLSSTEVFLCRRGVVSSTSVQTICALEGCKPLFNFLQIGSVIGPV", "sequence_length": 3175, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ce2575541ff35c6fe0e4892bb07cff90374806ebe3b905af4e872c337a51b84f", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P19811.json", "taxon_id": "299386", "uniprot_accession": "P19811", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lactate dehydrogenase elevating virus (strain C)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3756-pf12581.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12581", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3756-pf12581.yaml" } ], "pfam_ids": [ "PF00680", "PF01443", "PF05410", "PF05411", "PF05412", "PF05579", "PF12581", "PF16749", "PF21905", "PF22049" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQSGFDRCLCTPNARVFWERGQVYCTRCLAARPLLPLSQQHPRLGALGLFYRPASPLSWEAPVTYPTKECRPGGMCWLSSIYPIARMTSGNHNFQARLNFIASVVYRDGKLTSKHLEEDFEVYSRGCRWYPITGPVPGIALYANAVHVSDESFPGATHVLSNLPLPQQPLRKGLCPFADARANVWRYKGNTVFVSPQGYLWTTGSNDSVPEPWGEDRRLCEKIISSLPADHLVKINFSNYPFDYSFTGGDGAGFVVFPCKERDTKFSKCWEKIFEDHSGWMAACEEADLADRMGYRTPAGVAGPYLARRLQVRGLRAVVKPENNDYIVWALGVPESYIRHVSRAGEPVEEFFVKVGEFSIVSNCVVTPHPKFRFQTRKYYGYSPPGDGACGLHCISAMLNDIFGDSFTTRLGKCSRDSSEWLSDQDLYQLVMTANLPATIGHCPSAIYKLDCVNQHWTVTKRKGDRAVGRLAPDCLRGVCGECEMGIHIGADTDLSPIVELQLAQDVSPRPGALLWFLELHELCVVDDDFAHAIARAGEEYRRAMGIPRDDWVILAELMTENCRTRHQVLEKLQRGLQLQASSRPSSPASVSPASSVDLSAAGLLLSGTESDKEAVVAVNDGCYTVLGFDKNEATKSEQDLATDLFCDLVKPMETSTTKLESRKILEAAAKALESCKPKRKRSRKKKTRTPSPTCSVDAAVAEPTSVNSLGNQDTRETCASEKKAEKCPTPTPPPRPKRAALKNSNSGCVLKDIIWNQTGPGVKCLTIVEDVRAFLKGITPPGGVLSTRSRITKHIVDHFHSICEQTPELVLAHAEHQAKNLHELLASETAKLILGIGEDPLKKLVGSQRSLPRRLGFGAWLGGQQKTSGGCGEREFKDVGRKSGAERTPSKRDLGVSLGDQLSQDGARRLSSSTACEIKESVPPIIDSGGGLSQKFMAWLNHQVFVLSSHLLAVWSFIFGSRQVLGVFDYVYTLFCLCCVLLCFYLPAIGFMTLVGCVFGSPWRVRLSVFSVWLCVAVVVFQEVLPEPGAVCTSASAERAAALERYTSNGVHRPVNHLSVGLVGTVAGFVARSVGGPRRYWFYFLRLMVLLDLGLVFLAVALRGSCKKCFCKCVRTASHEVQLRVFPSTKVARTTLEAICDMYSAPRVDPIFIATGVRGCWTGSVSPHQVTEKPVSYSNLDDKKISNKTVVPPPTDPQQAVRCLKVLQCGGSIQDVSVPEVKKVTKVPFKAPFFPNVTIDPECYIVVDPVTYSAAMRGGYGVSHLIVGLGDFAEVNGLRFVSGGQIADFVCLGLYVLLNFLLSAWLSSPVSCGRGTNDPWCRNPFSYPVVGQGVMCNSHLCVAEDGLTSPMTLSYSLIDWALMVAIMATVAIFFAKISLLVDVVCVFCCLLMYAFPSLSIAAFGFPFVLCKVSLHPITLVWVQFFLLAVNVWAGVASVVVLISSWFLARATSSLGLITPYDVHMITATPRGASSLASAPEGTYLAAVRRSALTGRCCMFVPTNFGSVLEGSLRTRGCAKNVVSVFGSASGSGGVFTINGNPVVVTASHLLSDGKARVSCVGFSQCLDFKCAGDYAFARVANWKGDAPKAELSHRRGRAYCSPLVGLSLDLLGKNSAFCFTKCGDSGSPVVDEDGNLLGIHTGSNKRGSGMVTTHGGKTLGMANVKLSEMCPHYSGPGVPVSTVKLPKHLVVDVETVSSDLVAVVESLPALEGALSSMQLLCVFFFLWRLIHVPDVPVIRIAFFFLNEILPVMLARLMFSFALSLFFCVHWLFCSSVAVAFGDCCSKSVTGYSVQVLLLRLVIAALNRPCGPFGFSLLGQLSQCCLMLCLLDIELQLLGCLYLGQLLMWPPKEIFFHPTGQFMFLPLFLSLFKRNALADMLVGNGCFDAAFFLKYFAEGNLRDGVSDSCNMTPEGLTAALAITLSDDDLEFLQRHSEFKCFVSASNMRNGAKEFIESAYARALRAQLAATDKIKASKSILAKLESFAGGVVTQVEPGDVVVVLGKKVIGDLVEVVINDAKHVIRVIETRTMAGTQFSVGTICGDLENACEDPSGLVKTSKKQARRQKRTGLGTEVVGTVVIDGVSYNKVWHIATGDVTYEGCLVTENPQLRPLGMTTIGRFQEFIRKHGEKVKTSVEKYPVGKKKSVEFNITTYLLDGEEYDVPDHEPLEWTITIGESDLEAERLTVDQALRHMGHDSLLTAKEKEKLARIIESLNGLQQASALNCLATSGLDRCTRGGLTVSGDAVKLVRYHSRTFSIGDVNLKVMGREEYGRTVGKQGHCLVANLVDGVVVMRKHEPSLVDVLLTGEDADLISPTHGPGNTGVHGFTWDFEAPPTDLELELSEQIITACSIRRGDAPSLDLPYKLHPVRGNPYRDRGVLYNTRFGDIKYLTPQKTKEPLHAAACFNPKGVPVSDSETLVATTLPHGFELYVPTIPQSVLEYLDSRPMHRKCCVRAVVRGLAECDLQKFDLSRQGFVLPGVLYMVRRYLCRLVGIRRRLFLPSTYPAKNSMAGINGNRFPTHVVQSHPDIDALCERACKEHWQTVTPCTLKKQYCSKAKTRTILGTNNFVALGLRSALSGVTQGFMRKGIGSPICLGKNKFTPLPTKVSGRCLEADLASCDRSTPAIIRWFTTNLLFELAGPEEWIPSYVLNCCHDAVSTMSGCFDKRGGLSSGDPVTSVSNTVYSLVIYAQHMVLSAFRCGHKVGGLFLRDSLEMEQLFELQPLLVYSDDVVLYDESSELPNYHFFVDHLDLMLGFKTDRSKTVITSDPQFPGCRIAAGRVLVPQRDRILAALAYHMKASCVSDYFASAAAILMDACACCDYDEDWYFDLVCGIADCARKEGFRFPGPSFYVDMWKRLSVEEKKKCRTCAHCGAPSTLVSSCGLNLCDYHGHGHPHCPVVLPCGHAVGSGVCDGCSSPVMSLNTELDKLLACVPYHPPKVELLSVNDGVSSLPPGRYQARGGVVSVRRDILGNVVDLPDGDYQVMKVAQTCADICMVSINSHILRSQFITGAPGTGKTTYLLSVVRDDDVIYTPTHRTMLDVVKALGTCRFDPPKDTPLEFPVPSRTGPCVRLIRAGFIPGRVSYLDEAAYCNPLDVLKILSKTPLVCVGDLNQLPPVDFIGPCYAFALMLGRQLIEVFRFGPSIVNPIKKFYREELVSRGPDTGVKFLKSYQPYGQVLTPYHRDRVDGAITIDSSQGCTYDVITVYLPTPKSLNSARALVAITRARFYVFVYDPHNQLEQYLNMSEHEPAGAVAFWCGEQPMMISEGRVQRLSGPAQTTDPKLQQLMGLEGTASPLPQVAHNLGFYYSPDLVQFARIPSELCKHWPVVTAQNRTDWPDRLVCSMSKIDKCSRAIFCAGYHVGPSVFLGVPGVVSYYLTKFLKGKPVPLPDSLMSTGRIALNVREYLDEKEMEFSSRCPHAFIGEVKGSNVGGCHHVTSRYLPPVLVPGSVVKIGVSCPGKAAKELCTVTDVYLPELDPYLNPPTKSMDYKLLVDFQPVKLMVWKDATAYFHEGIRPMESMSRFLKVPQEEGVFFDLDEFVTNAKVSKLPCKYSVSANQFLTDVVLSMTHPSLAPPDYELLFARAYCVPGLDVGTLNAYIYRRGPSTYTTSNIARLVKDICCPVGCKGSGYMFPK", "sequence_length": 3637, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5685a6f6669bf7582bdf39845dfe206eb3ae0a71f1df500a93a7ed863b9abe10", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q06502.json", "taxon_id": "300015", "uniprot_accession": "Q06502", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lactate dehydrogenase elevating virus (strain Plagemann)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3756-pf12581.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12581", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3756-pf12581.yaml" } ], "pfam_ids": [ "PF00680", "PF01443", "PF05410", "PF05411", "PF05412", "PF05579", "PF12581", "PF16749", "PF21905", "PF22049" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQSGFDRCLCTPNARVFWEHGQVYCTRCLAARPLLPLSQQNPRLGALGLFYRPATPLTWEAPITYPTKECRPGGLCWLSGIYPIARMTSGNHNFQARLNFVASVVYRDGKLTSKHLEEEFEVYSRGCRWYPITGPVPGIALYANAVHVSDEPFPGCTHVLSNLPLPQQPLRKGLCPFSDARAEVWRYKGNTIFVSEQGYLWTTGSNDSVPEPWGEARRLCEKIIASLPADHLVKIEFSNYPFDYSFTGGDGAGYVLFPCKKNDTKFSKCWEKVFEDHSSWKVACEEADLADRMGYRTPAGVAGPYLARRLQYRGLRAVVKPEQNDYVVWALGVPESYIRHISRAGEPVENFFVRVGEFSIVSNCVATPYPKFRFQTRKYYGYSPPGDGACGLHCISAIINDIFGDALCTKLTNCSRDSSEWLSDQDMYQLVMTARLPATLGHCPSATYKLDCVNQHWTVTKRKGDRALGGLSPECVRGVCGGECKFVPTYPREINLELAAKSPISALAFSLGVEPYCDCWNFTNSVLVNDSLAVETARAGEAYRSAMGIPKDDWVLLAELMTENCLTRREVLDKLQRGLRLHATSKPGSPASVSPASSIDFSAAGLLLDGTESDKEAVVAVNNDCYTVLGFDKNSATKSEQELATGLFSELVEPMETSTSKHESRKILEAASRALKSAKPKRKRNKKKKTSSPTPTPPETPTREVPGAIEVVSGDEEAGACESATIVPDKAQARPPPRPKRQALKKAEQGFILKDIIWNPTESGVKCLTIVEDVRAFLKSITPPGGALGTRARITAHIVEQFHVIRESTPELVLAHAEHQAKNMHELLLSEKAKLILGIGEDTLKKLVSSQRSLPRSIGFGAWLSDQQKTADSCGEREFVEVPLKSGAEPTPSKRDLGVSLGDQLSQDGAPRLSSSTACEIKERVPPIKDSGGGLGQKFMAWLNHQVFLLSSHLLAMWSVVLGSRQKLNWADYVYTLFCLCCVLLCFHFPAIGFIPLAGCVFGSPWRVRLSVFSVWLCVAVVVFQEVLPEPGSVCSSASAECAAALERYSGNGVHRPVNHIGVGLVGTVAGFVARVVGGPRHYWFYFLRLMVVLDLGLVFLAVALRGRCKKCFCKCVRVAPHEVHLRVFPLTKVARPTLEAVCDMYSAPRVDPILVATGIKGCWQGKVSPHQVTDKPVSYSNLEEKKISNKTVVPPPTDPQQAVKCLKVLQCGGSIQDVGVPEVKKVSKVPYKAPFFPNVSIDPECYIVVDPVTYSAAMRGGYGVSHLIVGTGDFAEVNGLRFVSGGHVADFVCLGLYVMLNFLISAWLSSPVSCGRGTNDPWCKNPFSYPVVGQGVMCNSHLCISEDGLTSPMVLSYSLIDWALMIAVIATVAIFIAKVSLLVDVICVFLCLLMYVFPPLSVIAFAFPFALCKVHLHPVTLVWVQFFLLAVNFWAGVAVAVILISSWFLARATSSTGLVTPYDVHLVTSTPRGASSLASAPEGTYLAAVRRSALTGRCCMFVPTNFGSVLEGSLRTRGCAKNVVSVFGSASGSGGVFTIHGNPVVVTATHLLSDGKARVSCVGFSQCLTFKSVGDYAFARVAEWKGDAPKVELSDRRGRAYCSPQVEWSLVLLGPNTAFCFTKCGDSGSPVVDEDGNLIGVHTGSNKRGSGMITTHNGKTLGMSNVKLSEMCQHYGGSGVPVSTVRLPKHLIVDVEAVASDLVAVVESLPTPEGALSSVQLLCVFFFLWRLIHVPFVPVIAVAFFFLNEILPVVLARLMFSFALSLFSVFTGFSVQVLLLRLVIAALNRSAVSFGSFLLGQLFHCCLMPSHLETLGPVPGYFYPSTTEVASKEIFVTLLAIHVLALLLSLFKRPMLADVLVGNGSFDAAFFLKYFAEGNLRDGVSDSCNMTPEGLTAALAITLSDDDLEFLQRHSEFKCFVSASNMRNGAKEFIESAYARALRAQLAATDKIKASKSILAKLESFAGGVVTKVEPGDVVVVLGKKIVGDLVEITINDVKHVIRVIETRVMAGTQFSVGTICGDLENACEDPSGLVKTSKKQRRRQKRTGLGTEVVGTVEIDGVSYNKVWHKATGDVTYEGFLVSENSRLRTLGTSAIGRFQEFIRKHGSKVKTSVEKYPVGKNKHIEFAVTTYNLDGEEFDVPDHEPLEWTITIGDSDLEAERLTVDQALRHMGHDSLLTPKEKEKLARIIESLNGLQQSSALNCLTTSGLERCSRGGVTVSKDAVKIVKYHSRTFSIGDVNLKVMSFDEYRRTMGKPGHLLVAKLTDGVVVMRKHEPSLVDVILTGEDAEFFPRTHGPGNTGIHRFVWDFESPPVDLELELSEQIITACSMRRGDAPALDLPYKLHPVRGDPYRHRGVLFNTRFGDITYLIPEKTKEPLHAAACYNKGVPVSDSETLVATTLPHGFELYVPTLPPSVLEYLDSRPDTPRMLTKHGCASAAEKDLQKFDLSRQGFVLPGVLYMVRRYLSRLIGVRRRLFMPSTYPAKNSMAGINGGRFPLTWLQSHPDIDALCKRACEEHWQTVTPCTLKKQYCSKSKTRTILGTNNFVALGLRSALSGVTQGFMRKGIGTPICLGKNKFTPLPVRIGGRCLEADLASCDRSTPAIIRWFTTNLLFELAGAEEWIPSYVLNCCHDVVSTMSGCFDKRGGLSSGDPVTSISNTVYSLIIYAQHMVLSAFRCGHKIGGLFLQDSLEMEQLFELQPLLVYSDDVVFYNESDELPNYHFFVDHLDLMLGFKTDRSKTVITSEPKLPGCRISGGRVLVPQRDRIVAALAYQMKASCVGEYFASAAAILMDACACCDHDESWYFDLVCGIAECAGSPWFRFPGPSFFLDMWNRLSAEEKKKCRTCAHCGAPATLVSSCGLNLCDYHGHGHPHCPVVLPCGHAVGSGVCEQCSSSAMNLNTELDILLMCVPYHPPKVELLSVNDKVSSLPPGAYQARGGVVSVRRDILGNVVDLPDGDYQVMKVAQTCADISMVSVNSNILRSQFVTGAPGTGKTTYLLSVVRDDDVIYTPTHRTMLDVVKALKVCRFDPPKDTPLEFPVPGRTGPTVRLIGAGFVPGRVSYLDEAAYCNPLDVLKVLSKTPLVCVGDLNQLPPVGFNGPCFAFSLMPGRQLIEVFRFGPAVVNSIKKFYKEELVPRGPDTGVKFLKQYQPYGQVLTPYHRDRVDGAITIDSSQGCTYDVVTVYLPTPKSLNSARALVALTRARHYVFIYDPYDQLQQYLQVFEHEPADAWAFWCGDQPKMIVGGVVKQLAGHSRTTDLKLQQLMGLEGTASPLPQVGHNLGFYYSPDLIQFAKIPPELCKHWPVVTAQNRTEWPDRLVCGMNKMDKNSRAVFCAGYYVGPSIFLGVPGVVSYYLTKYLKGESVPLPDSIMSTGRIRLNVREYLDENEIEFAKKCPQPFIGEVKGSNVGGCHHVTSRFLPPVLVPGSVVKVGVSCPGKAAKGLCTVTDVYLPELDSYLHPPSKSMDYKLLVDFQPVKLMVWKDATAYFHEGIRPMEAMSRFLKVPEGEGVFFDLDEFVTNAKVSKLPCKYSVSAHQFLTEVVLSMTPTSEAPPDYELLFARAYCVPGLDVGTLNAYIYKRGPSTYTTSNFARLVKDTAVPVGCKGSGYMFPK", "sequence_length": 3616, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a3a7efea4ce1380e69031b5abfd1e9a7b60f23a656ab0a7a5da4148a67195c5b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q83017.json", "taxon_id": "300016", "uniprot_accession": "Q83017", "uniprot_release": "2026_03" } ], "pfam_id": "PF12581", "short_name": "DUF3756", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12582", "short_name": "DUF3757", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cell-plate-assembly-go0000919.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000919", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cell-plate-assembly-go0000919.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trappc10-trs130-c-terminal-ipr022233.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022233", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trappc10-trs130-c-terminal-ipr022233.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trappc10-trs130-n-terminal-ipr056913.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056913", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trappc10-trs130-n-terminal-ipr056913.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trs130-like-first-ig-like-domain-ipr060295.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR060295", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trs130-like-first-ig-like-domain-ipr060295.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-trs130-pf28381.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28381", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-trs130-pf28381.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trappc10-1st-pf23036.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trappc10-1st-pf23036.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trappc10-c-pf12584.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12584", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trappc10-c-pf12584.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:F4K0C4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12584", "PF23036", "PF28381", "PF30303" ], "protein_name": "Trafficking protein particle complex II-specific subunit 130 homolog", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "67708e294913f4de52f29ceffe917547a64fe21c07c26aeaec1497978b71cc79", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": 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"MANYLAQFQTIKNSCDRLVAAVEDVCDLWPTVKGLFEEHQPLKRAFLTNKTRNPVFVENLPVEFILTTDARLRSRFPQEQYLFWFREPYATIVLVTCEDLDEFKNILKPRLKLIVQNDEREWFIVFVSKAHPSNDQATKNVKKVYAKLEVDFSSKKRERCCKLDVHGPEGNFWEDLELKITECIRNTLDRRAQFYEDEIRKLSEQRFMPIWNFCNFFILKESLAFIFEMAHLHEDALREYDELELCYLETVNMPGKQRDFGGFDGEDDQAVLLKPGSKPLTQIVQDDSFREFEFRQYLFACQSRLLFKLNRPFEVASRGYSFVISFAKALTLHESVLPFCMREVWVITACLALIEATASHHHDGVVAPDIEKEFFRLQGDLYSLSRVKFMRLGYLIGYGTDIEKSPLNSACLSMLPWPKPAVWPSLPQDASSEVLEKEKTILQATSRTKHFGIQRKALPLEPSVLLRVANRRRASLSTGNIPEMFDGRPSFTEGSGLEASPRTPSSLKVQAPPMSRTNSSPGNFESPLDRPMRLAEIFVAAEHALRLTISDHDLLKTLSSIQDFENKYLNLTKGAAENYHRSWWKRHGVVLDGEIAAVCFKHGKYDLAANSYEKVCALYAGEGWQDLLAEVLPNLAQCQKILDDQAGYMSSCVRLLSLDKGLFSSKERQAFQSEVVTLAHSEMKNPVPLDVSSLITFSGNTGPPLQLCDGDPGNLSVTVWSGFPDDITLDSLSLTLVATNNTDEGGQALKSSAATVLNPGRNTITFALPPQKPGSYVLGVVTGQIGRLRFRSHSFSKGGPADSDDFMSYEKPTRPILKVSKPRALVDLAAAVSSALLINEAQWIGIIVRPIAYSLKGAILHIDTGPGLKIEDSYGIEMERYMDADCDTGASKAEVFVEDSPVSSKRDSEVLNLCDGKIVFSDWASNVSSILWVPVRALSEKLARGSSSVTPLKQDILEGMRTVALKLEFGVHHNQIFERTIAAHFTDPFDVTTRVANKCNDGTLVLQVMLHSLVKANLIVLDVWLDLQDGFIHGQNDGRPTSTFFPLVVSPGSRAAVVFSICLDKSMSSEGKDLQLPESILNIKYGIHGDRAAGAHRPVDADHSETDTEGRDLVFKSAIVLQRPVLDPCLTVGFLPLPSDGLRVGKLITMQWRVERLKELKESEAVEQQHDEVLYEVNANSENWMIAGRKRGHVSLSEEQGSRVVISILCVPLVAGYVRPPQLGLPNVEEANVSSNPSGPHLVCVLPPLLSSSYCLPVK", 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"commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q03660", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12584", "PF23036", "PF24966", "PF24967", "PF30300" ], "protein_name": "Trafficking protein particle complex II-specific subunit 130", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "45f9e96ba8f02f6d19790acccc61c2ac4794897d6540b5af72dc148de65b79be", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", 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"Pfam:PF23036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trappc10-1st-pf23036.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trappc10-c-pf12584.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12584", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trappc10-c-pf12584.yaml" } ], "pfam_ids": [ "PF12584", "PF23036", "PF23604", "PF30303", "PF30304" ], "protein_name": "Trafficking protein particle complex subunit 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"sequence_sha256": "8465d9e102f4797408e42ac41749a92097e9ca4a329d402251a83ee343b35427", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P31473.json", "taxon_id": "83333", "uniprot_accession": "P31473", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella sonnei (strain Ss046)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aaa-lid-8-pf17868.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17868", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aaa-lid-8-pf17868.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/atpase-rava-c-pf12592.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12592", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/atpase-rava-c-pf12592.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bpmoxr-pf20030.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bpmoxr-pf20030.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lara-dom-pf20265.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20265", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lara-dom-pf20265.yaml" } ], "pfam_ids": [ "PF12592", "PF17868", "PF20030", "PF20265" ], "protein_name": "Regulatory ATPase RavA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAHPHLLAERISRLSSSLEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRLQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKDCLWYDAQSLNLIQQQIDVLMTGHAWQQQGMLTRLGAIVQRHLQLQQQQSDKTALTVIRLGGIFSRRQQYQLPVNVTASTLTLLLQKPLKLHDMEVVHISFERSALEQWLSKGGEIRGKLNGIGFAQKLNLEVDSAQHLVVRDVSLQGSTLALPGSSAEGLPGEIKQQLEELESDWRKQHALFSEQQKCLFIPGDWLGRIEASLQDVGAQIHQAQQC", "sequence_length": 498, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5738521cca0b7c36b710a71554cdb452e93807b503651957cc80d2993fd71580", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3YVQ0.json", "taxon_id": "300269", "uniprot_accession": "Q3YVQ0", "uniprot_release": "2026_03" } ], "pfam_id": "PF12592", "short_name": "ATPase_RavA_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12594", "short_name": "DUF3764", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cox20-pf12597.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12597", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cox20-pf12597.yaml" } ], "pfam_ids": [ "PF12597" ], "protein_name": "Cytochrome c oxidase assembly protein COX20, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRWWPWSNQTEDQKQQQQPQGKADGDRVLTNYSRGQKILLEDTPPKFADDLSNSQLAKKQERATLKEAWDSIRWSDFSLQKLTSIPCFRDAGMLGFSSMFLMGSIIFIYHKSPTKATNWAMSSLILGSIVGWEQCRLKRQKSFQIAQLAKETVAKKEKPMLHNVPHDPSLPGQWEAAKNEKQSQFEQSNQNLSQASSEKKWYKFW", "sequence_length": 205, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0010bb41c1665c983ad4cd796c02ff2ed82338bf77f20b923c9a838d4c258f2e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q04935.json", "taxon_id": "559292", "uniprot_accession": "Q04935", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cox20-pf12597.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12597", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cox20-pf12597.yaml" } ], "pfam_ids": [ "PF12597" ], "protein_name": "Cytochrome c oxidase assembly protein COX20, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAPPEPGEPEERKSLKLLGFLDVENTPCARHSILYGSLGSVVAGFGHFLFTSRIRRSCDVGVGGFILVTLGCWFHCRYNYAKQRIQERIAREEIKKKILYEGTHLDPERKHNGSSSN", "sequence_length": 118, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "20f8f36027cdbd498db3f20dace41be27ddce6ad164f2496f9d7293060e6df98", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5RI15.json", "taxon_id": "9606", "uniprot_accession": "Q5RI15", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cox20-pf12597.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12597", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cox20-pf12597.yaml" } ], "pfam_ids": [ "PF12597" ], "protein_name": "Cytochrome c oxidase assembly protein COX20, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAPEPHETEKKPFKLLGILDVENTPCARESILYGSLGSIVTGLGHFLVTSRIRRSCDVGVGGFILVTLGCWFHCRYNFAKQRIQERIAREGIKNKILYESTHLDPERKMKTNNSS", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e30ef7066408ad2456e85698a250225b8921096028ffd12bf2c8d66fe31fde62", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D7J4.json", "taxon_id": "10090", "uniprot_accession": "Q9D7J4", "uniprot_release": "2026_03" } ], "pfam_id": "PF12597", "short_name": "Cox20", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12599", "short_name": "DUF3768", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12600", "short_name": "DUF3769", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dabie bandavirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/l-pa-c-like-pf12603.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12603", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/l-pa-c-like-pf12603.yaml" } ], "pfam_ids": [ "PF04196", "PF12603", "PF15518" ], "protein_name": "RNA-directed RNA polymerase L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLEVLCGRINVENGLSLGEPGLYDQIYDRPGLPDLDVTVDATGVTVDIGAVPDSASQLGSSINAGLITIQLSEAYKINHDFTFSGLSKTTDRRLSEVFPITHDGSDGMTPDVIHTRLDGTIVVVEFTTTRSHNIGGLEAAYRTKIEKYRDPISRRVDIMENPRVFFGVIVVSSGGVLSNMPLTQDEAEELMYRFCIANEIYTKARSMDADIELQKSEEELEAISRALSFFSLFEPNIERVEGTFPNSEIEMLEQFLSTPADVDFITKTLKAKEVEAYADLCDSHYLKPEKTIQERLEINRCEAIDKTQDLLAGLHARSNKQTSLNRGTVKLPPWLPKPSSESIDIKTDSGFGSLMDHGAYGELWAKCLLDVSLGNVEGVVSDPAKELDIAISDDPEKDTPKEAKITYRRFKPALSSSARQEFSLQGVEGKKWKRMAANQKKEKESHDALSPFLDVEDIGDFLTFNNLLADSRYGDESVQRAVSILLEKASAMQDTELTHALNDSFKRNLSSNVVQWSLWVSCLAQELASALKQHCRAGEFIIKKLKFWPIYVIIKPTKSSSHIFYSLGIRKADVTRRLTGRVFSETIDAGEWELTEFKSLKTCKLTNLVNLPCTMLNSIAFWREKLGVAPWLVRKPCSELREQVGLTFLISLEDKSKTEEIITLTRYTQMEGFVSPPMLPKPQKMLGKLDGPLRTKLQVYLLRKHLDCMVRIASQPFSLIPREGRVEWGGTFHAISGRSTNLENMVNSWYIGYYKNKEESTELNALGEMYKKIVEMEEDKPSSPEFLGWGDTDSPKKHEFSRSFLRAACSSLEREIAQRHGRQWKQNLEERVLREIGTKNILDLASMKATSNFSKDWELYSEVQTKEYHRSKLLEKMATLIEKGVMWYIDAVGQAWKAVLDDGCMRICLFKKNQHGGLREIYVMDANARLVQFGVETMARCVCELSPHETVANPRLKNSIIENHGLKSARSLGPGSININSSNDAKKWNQGHYTTKLALVLCWFMPAKFHRFIWAAISMFRRKKMMVDLRFLAHLSSKSESRSSDPFREAMTDAFHGNREVSWMDKGRTYIKTETGMMQGILHFTSSLLHSCVQSFYKSYFVSKLKEGYMGESISGVVDVIEGSDDSAIMISIRPKSDMDEVRSRFFVANLLHSVKFLNPLFGIYSSEKSTVNTVYCVEYNSEFHFHRHLVRPTLRWIAASHQISETEALASRQEDYSNLLTQCLEGGASFSLTYLIQCAQLLHHYMLLGLCLHPLFGTFMGMLISDPDPALGFFLMDNPAFAGGAGFRFNLWRACKTTDLGRKYAYYFNEIQGKTKGDEDYRALDATSGGTLSHSVMVYWGDRKKYQALLNRMGLPEDWVEQIDENPGVLYRRAANKKELLLKLAEKVHSPGVTSSLSKGHVVPRVVAAGVYLLSRHCFRFSSSIHGRGSTQKASLIKLLMMSSISAMKHGGSLNPNQERMLFPQAQEYDRVCTLLEEVEHLTGKFVVRERNIVRSRIDLFQEPVDLRCKAEDLVSEVWFGLKRTKLGPRLLKEEWDKLRASFAWLSTDPSETLRDGPFLSHVQFRNFIAHVDAKSRSVRLLGAPVKKSGGVTTISQVVRMNFFPGFSLEAEKSLDNQERLESISILKHVLFMVLNGPYTEEYKLEMIIEAFSTLVIPQPSEVIRKSRTMTLCLLSNYLSSRGGSILDQIERAQSGTLGGFSKPQKTFIRPGGGVGYKGKGVWTGVMEDTHVQILIDGDGTSNWLEEIRLSSDARLYDVIESIRRLCDDLGINNRVASAYRGHCMVRLSGFKIKPASRTDGCPVRIMERGFRIRELQNPDEVKMRVRGDILNLSVTIQEGRVMNILSYRPRDTDISESAAAYLWSNRDLFSFGKKEPSCSWICLKTLDNWAWSHASVLLANDRKTQGIDNRAMGNIFRDCLEGSLRKQGLMRSKLTEMVEKNVVPLTTQELVDILEEDIDFSDVIAVELSEGSLDIESIFDGAPILWSAEVEEFGEGVVAVSYSSKYYHLTLMDQAAITMCAIMGKEGCRGLLTEKRCMAAIREQVRPFLIFLQIPEDSISWVSDQFCDSRGLDEESTIMWG", "sequence_length": 2084, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c10cf432d4601820a5533b5b387de14e2985ae2f279119cd9d16f1ca4c295bce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/I0DF35.json", "taxon_id": "1003835", "uniprot_accession": "I0DF35", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Heartland virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/l-pa-c-like-pf12603.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12603", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/l-pa-c-like-pf12603.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/l-protein-n-pf15518.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15518", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/l-protein-n-pf15518.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bunya-rdrp-pf04196.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04196", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bunya-rdrp-pf04196.yaml" } ], "pfam_ids": [ "PF04196", "PF12603", "PF15518" ], "protein_name": "RNA-directed RNA polymerase L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLEALCSRVLSERGLSTGEPGVYDQIFERPGLPNLEVTVDSTGVVVDVGAIPDSASQLGSSINAGVLTIPLSEAYKINHDFTFSGLTKTTDRKLSEVFPLVHDGSDSMTPDVIHTRLDGTVVVIEFTTTRSTNMGGLEAAYRSKLEKYRDPLNRRTDIMPDASIYFGIIVVSASGVLTNMPLTQDEAEELMFRFCVANEIYSQARAMDAEVELQKSEEEYEAISRARAFFTLFDYDDGKLSEAFPNSDIEMLRRFLSQPVDTSFVTTTLKEKEQEAYKRMCEEHYLKSGMSTKERLEANRSDAIDKTRALMERLHNMSSKELHSNKSTVKLPPWVVKPSDRTLDVKTDTGSGELLNHGPYGELWSRCFLEIVLGNVEGVISSPEKELEIAISDDPEADTPKAAKIKYHRFRPELSLESKHEFSLQGIEGKRWKHSARNVLKDEMSHKTMSPFVDVSNIEEFLIMNNLLNDTSFNREGLQETINLLLEKATEMHQNGLSTALNDSFKRNFNTNVVQWSMWVSCLAQELASALKQHCKPGEFIIKKLMHWPIFVIIKPTKSSSHIFYSLAIKKANIKRRLIGDVFTDTIDAGEWEFSEFKSLKTCKLTNLINLPCTMLNSIAFWREKMGVAPWISRKACSELREQVAITFLMSLEDKSTTEELVTLTRYSQMEGFVSPPLLPKPQKMVEKLEVPLRTKLQVFLFRRHLDAIVRVAASPFPIVARDGRVEWTGTFNAITGRSTGLENMVNNWYIGYYKNKEESTELNALGEMYKKIVEIEAEKPTSSEYLGWGDTSSPKRHEFSRSFLKSACISLEKEIEMRHGKSWKQSLEERVLKELGSKNLLDLATMKATSNFSKEWEAFSEVRTKEYHRSKLLEKMAELIEHGLMWYVDAAGHAWKAVLDDKCMRICLFKKNQHGGLREIYVTNANARLVQFGVETMARCVCELSPHETIANPRLKSSIIENHGLKSARQLGQGTINVNSSNDAKKWSQGHYTTKLAMVLCWFMPAKFHRFIWAGISMFRCKKMMMDLRFLEKLSTKANQKTDDDFRKDLAGAFHGNVEVPWMTQGATYLQTETGMMQGILHFTSSLLHSCVQSFYKAYFLSRLKEGIAGRTIKAAIDVLEGSDDSAIMISLKPASDNEEAMARFLTANLLYSVRVINPLFGIYSSEKSTVNTLFCVEYNSEFHFHKHLVRPTIRWVAASHQISESEALASRQEDYANLLTQCLEGGSSFSLTYLIQCAQLVHHYMLLGLCLHPLFGTFVGMLIEDPDPALGFFIMDNPAFAGGAGFRFNLWRSCKFTNLGKKYAFFFNEIQGKTKGDADYRALDATTGGTLSHSVMTYWGDRRKYQHLLDRMGLPKDWVERIDENPSILYRRPENKQELILRLAEKVHSPGVTSSFSKGHVVPRVVAAGVYLLSRHCFRYTASIHGRGASQKASLIKLLVMSSTSAERNQGRLNPNQERMLFPQVQEYERVLTLLDEVTALTGKFVVRERNIVKSRVELFQEPVDLRCKAENLIAEMWFGLKRTKLGPRLLKEEWDKLRASFSWLSTDHKETLDVGPFLSHVQFRNFIAHVDAKSRSVRLLGAPVKKSGGVTTVSQVVKSNFFPGFILDSSESLDDQERVEGVSILKHILFMTLNGPYTDEQKKAMVLETFQYFALPHAAEVVKRSRSLTLCLMKNFIEQRGGSILDQIEKAQSGTVGGFSKPQKPYRKQSGGIGYKGKGVWSGIMENTNVQILIDGDGSSNWIEEIRLSSESRLFDVIESVRRLCDDINVNNRVTSSFRGHCMVRLSNFKVKPASRVEGCPVRLMPSSFRIKELQNPDEVFLRVRGDILNLSILLQEDRVMNLLSYRARDTDISESAASYLWMNRTDFSFGKKEPSCSWMCLKTLDSWAWNQAARVLERNIKTPGIDNTAMGNIFKDCLESSLRKQGLLRSRIAEMVERHVIPLTSQELVDILEEDVDFSEMMQSDIMEGDLDIDILMEGSPMLWAAEVEEMGEAMVILSQSGKYYHLKLMDQAATTLSTILGKDGCRLLLGRPTGRSNLREQVKPYLTLLQIREGDVNWVSEYKDDTRGLDEDSAEMWG", "sequence_length": 2084, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e033eb8decbc8c6397137da4df9adc07df61a8649f6ed2e82b68f095a4c3ee47", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/J3TRD1.json", "taxon_id": "1216928", "uniprot_accession": "J3TRD1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Uukuniemi virus (strain S23)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/l-pa-c-like-pf12603.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12603", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/l-pa-c-like-pf12603.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/l-protein-n-pf15518.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15518", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/l-protein-n-pf15518.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bunya-rdrp-pf04196.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04196", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bunya-rdrp-pf04196.yaml" } ], "pfam_ids": [ "PF04196", "PF12603", "PF15518" ], "protein_name": "RNA-directed RNA polymerase L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLAICSRTIRQQGLNCPPAVTFTSSHMRPPIPSFLLWTEGSDVLMDFDLDTIPAGSVTGSSIGPKFKIKTQAASSFVHDFTFAHWCDASDMPLRDHFPLVNDTFDHWTPDFISQRLDGSKVVVEFTTNRSDQEQSLISAFNTKVGKYEVALHNRSTTSSILFGVVVVSETTVVTNLNLNQQEVDELCFRFLVARAVHLEMTTKMIIPEYDDEDEDKRSREVKAAFHSVQPDWNVTEANFAPFSRRMFSNFAQMEPDKEYLAHIILDSLKQAQADLDGNHYLNESLTEQARLDRNREESLNMVKDFERDFNNAAQRSAWSHKSTVPFPGVIPKVSGDTTSLSRLVELPVITGGSDATIRAWRSAYGSVSNGTVERCDEDVERERRAALCSLTVEELEESKALRMKYHRCKIDNGMMDKLDLAMQGVEAKEFKNHPSIIKKRSKSKKTFPLTADTRDIDLFLHHDDLMFNNEHSQTPPAAMIEAVKAGADAQSLHGLDKSANPWYASALWFLGLPIGLWLFMCTCIGVELSISLKQHCGRQKFIIKKLRFFDIFLLIKPTNSGSHVFYSIAFPESAILGKLHRSQCFKGLQFEDGWFWTEFSSFKMSKLTNVVKCLSTGFNLFWFWRDYYEVPFWAGNEKDFQTGKQRANKMFKFCLLMLLEDKARTEEIATLSRYVMMEGFVSPPCIPKPQKMIEKLPNLARTKFQVWLISRMLQTIIRVSDYPFKITAGHKSANWTGMFNWVTGEPIESTQKLISLFYLGYLKNKEESPERNASIGMYKKILEYEDKHPGRYTYLGLGDPPSDDTRFHEYSISLLKHLCIHAEHDLRRNWGESFKAMISRDIVDAIASLDLERLATLKASSNFNEEWYQKRGDGKTYHRSKVLEKVSKYVKKSSSHVHHIMEECLRKVESQGCMHVCLFKKPQHGGLREIYVLGFEERVVQLVIETIARQICKRFKSETLTNPKQKLAIPETHGLRAVKTCGIHHETVATSDDAAKWNQCHHVTKFALMLCHFTDPLFHGFIIRGCSMFMKKRIMIDQSLIDIIDSHTTLETSDAYLQKIHRGYHGSLDDQPRWISRGGAFVQTETGMMQGILHYTSSLLHTLLQEWLRTFSQRFIRTRVSVDQRPDVLVDVLQSSDDSGMMISFPSTDKGATGKYRYLSALIFKYKKVIGKYLGIYSSVKSTNNTLHLLEFNSEFFFHINHNRPLLRWITACDTISEQESLASRQEEMYNNLTSVLEGGGSFSLVSFCQFGQLLLHYTLLGMTVSPLFLEYIKLVSEIKDPSLGYFLMDHPFGSGLSGFKYNVWVAVQNSILGSRYRSLLEAIQNSDSAAPKKTLDTTTSGTFVQSTIIRFGDRKKWQRLVDRLNLPEDWLDVIDKNPEIVYRRPRDGFEVSLRIAEKVHSPGVSNSLSKGNCIIRVISSSVYILSRSILSDGLAWLYDEEEEVKRPLLYKVMNQPELDLHSRLTPAQLSTLFPMMAEFEKLQTHLRSYMKIEGEFISKKKVITQTRVNILETERFLRARPEDLIADKWFGFTRTRMTPRTFKEEWENLTSVFPWLTGNPSETLELSPFQHHVQLRNFFSRLDLKGRDIRIIGAPIKKSSGVSNVSTAIRDNFFPRFVLTHIPDEAAMERIEAAGILKHALFLTVTGPYTDQSKLDMCRDFITSSEPITLKPNHGKTRTNVLSLFQDYFSKRGPDIIFNRIQMANCGVIGGFTSPQKPKEVDGKIVYTGDGVWRGIVDGFQIQLVITYMPKQKSNELKSITVNSDRCISALSSFCQSWCKEMGVFNTEDFSKTQRFSKASFFMHKFKISGSKQTLGAPIFIVSEKIFRPICWDPSKLEFRVRGNTLNLTYKEVNPGAGQRMFNILSYTVKDTDVSDENAFKLMSLSPRHKFHGREPSTSWICMRALPISTIDKLLERILNRERISGSIDNERLAECFKNVMESTLRRKGVFLSEFSRATQKMLDGLSRDMLDFFAEAGLNDDLLLEEEPWLSGLDTFMLDDEAYLEEYNLGPFGVFSVEQEMNTKYYHHLLLDSLVEDVIQKLSLDGLRKLFQEEEAPLEYKKEVIRLLNILQRDASQIKWKSRDLLSENMGLDVDDDMFG", "sequence_length": 2103, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1cc95056ac87fc3507d8db30f844970fd4e58f076cafdab6be1d48639a652f02", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P33453.json", "taxon_id": "487099", "uniprot_accession": "P33453", "uniprot_release": "2026_03" } ], "pfam_id": "PF12603", "short_name": "L_PA-C-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12607", "short_name": "DUF3772", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12608", "short_name": "T4bSS_IcmS", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12609", "short_name": "DUF3774", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12611", "short_name": "Flagellar_put", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12616", "short_name": "DUF3775", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/phf20-at-hook-pf12618.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/phf20-at-hook-pf12618.yaml" } ], "pfam_ids": [ "PF02820", "PF12618", "PF18115", "PF20826" ], "protein_name": "PHD finger protein 20", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKHPPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGRVLIHFKRWNHRYDEWFCWDSPYLRPLEKIQLRKEGLHDEDGSSEFQINQQVLACWSDCRFYPARVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSKDQNIVGNARPKETDHKSLSSSPEKREKFKEQRKVTVNVKKDKVEKALKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENEREYSGDAQVEKKPEKDLVKNPQENLKEPKRKRGRPPSITPTAVDSNSQTLQPITLELRRRKISKRSDTPLKRPRLDKNSPQEQSKKRSENSDKDLSRRRSSRLSTNGTREILDPDSIVPDLVHTVDTNPLPDKSPSAKDSAEGQLKSPLEAGQVSSALTCHPIGDGLGAADLELNCKSMGENTMKTEPVSPLAEVQEVSTVEVPNTLKKVDDSVTLNVPAVDLDHKFRCKVLDCLKFFRKAKLLHYHMKYFHGMEKSPEPEEGPGKTHVQTRGSAVPDKTSQESLTRKRVSASSPTAKEKEKTKEKKFKELVRVKPKKKKKKKKKTKPECPCSEDISDTSQEPSPPKTFAVTRCGSSHKPGVHMSPQLHGSDNGNHKGKLKTCEEDNLSESSSESFLWSDEEYGQDVDVTTNPDEELEGDDRYDFEVVRCICEVQEENDFMIQCEECQCWQHGVCMGLLEENVPEKYTCYVCQDPPGQRPGFKYWYDKEWLSRGHMHGLAFLDQNYSHQNARKIVATHQLLGDVQRVIQVLHGLQLKMSILQSREHPDLQLWCQPWKQHSGEGRAHPRHIHITDARSEESPSYRTLNGAVEKPSPLPRSVEESYITSEHCYQKPRAYYPAVEQRLVVETRGSALDAAVSPLCENGDDSLSPRLGWPIDQDRSRGDIDPKPSSPKVREYISKNVLPEETPARKLLDRGGEGLVSSQHQWQFNLLTHVESLQDEVTHRMDSIEKELDVLESWLDYTGELEPPEPLARLPQLKHCIKQLLTDLGKVQQIALCCST", "sequence_length": 1010, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ef3eed44bef47d60ab7fb65f27f19f8e8034dd4e076d38e31004a38c58a61bd4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BLG0.json", "taxon_id": "10090", "uniprot_accession": "Q8BLG0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/phf20-at-hook-pf12618.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/phf20-at-hook-pf12618.yaml" } ], "pfam_ids": [ "PF12618", "PF18115", "PF20826" ], "protein_name": "PHD finger protein 20", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKHPPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCWDSPYLRPLEKIQLRKEGLHEEDGSSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRKATVNVKKDKEDKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDREYSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKISKGCEVPLKRPRLDKNSSQEKSKNYSENTDKDLSRRRSSRLSTNGTHEILDPDLVVSDLVDTDPLQDTLSSTKESEEGQLKSALEAGQVSSALTCHSFGDGSGAAGLELNCPSMGENTMKTEPTSPLVELQEISTVEVTNTFKKTDDFGSSNAPAVDLDHKFRCKVVDCLKFFRKAKLLHYHMKYFHGMEKSLEPEESPGKRHVQTRGPSASDKPSQETLTRKRVSASSPTTKDKEKNKEKKFKEFVRVKPKKKKKKKKKTKPECPCSEEISDTSQEPSPPKAFAVTRCGSSHKPGVHMSPQLHGPESGHHKGKVKALEEDNLSESSSESFLWSDDEYGQDVDVTTNPDEELDGDDRYDFEVVRCICEVQEENDFMIQCEECQCWQHGVCMGLLEENVPEKYTCYVCQDPPGQRPGFKYWYDKEWLSRGHMHGLAFLEENYSHQNAKKIVATHQLLGDVQRVIEVLHGLQLKMSILQSREHPDLPLWCQPWKQHSGEGRSHFRNIPVTDTRSKEEAPSYRTLNGAVEKPRPLALPLPRSVEESYITSEHCYQKPRAYYPAVEQKLVVETRGSALDDAVNPLHENGDDSLSPRLGWPLDQDRSKGDSDPKPGSPKVKEYVSKKALPEEAPARKLLDRGGEGLLSSQHQWQFNLLTHVESLQDEVTHRMDSIEKELDVLESWLDYTGELEPPEPLARLPQLKHCIKQLLMDLGKVQQIALCCST", "sequence_length": 1012, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99a56ed3cb7d342e77db01cd7adc5ced0045a043b4b6170930f9a874529672d9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BVI0.json", "taxon_id": "9606", "uniprot_accession": "Q9BVI0", "uniprot_release": "2026_03" } ], "pfam_id": "PF12618", "short_name": "PHF20_AT-hook", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12620", "short_name": "DUF3778", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/10tm-putative-phosphate-transporter-extracellular-tail-ipr022257.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/10tm-putative-phosphate-transporter-extracellular-tail-ipr022257.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/phm7-ext-pf12621.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12621", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/phm7-ext-pf12621.yaml" } ], "pfam_ids": [ "PF02714", "PF12621", "PF13967", "PF14703" ], "protein_name": "Uncharacterized protein RSN1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSTNSTNSTTTATSTNTSTQQVVTSLVSNGTIFGVFVIAFLILRIKLKRIYEPKSSFNLINEEKKPEPLPQGVWQWLKPLLKKSDNFVIQQAGLDGYFFLRYLFIIAIYCAVSMSYIFPILLSINASNGNHESGLNQLAYQNVKHRGRYFAHVFCGWIFFWGFLYIIYRELYFYTSMKQAVLASPRYAKKLSSRTVLFQTVPKQYLSEEEFSKLFDGVKRVWIARGSGSIEAMVKARDNMAIQLEGAETKYLKAALKKIKKLNKKSPQLSVSDNIAEYVPDKKRPHHKINKVAKFFFGKKVDTISYIKEELPKLNQKVKALQEDHENSSPFNSVFVEFESQYQAQVAAQITTYHAPLFMTPVYIGIEPSDVVWFNLRMFWWERLGREVSAVSAIVALVILWAFPVAFVGMISNITSLTNEVKWLKFIYKLPKQLLGLLTSLAPTVALAVLMSFLPKFIRGMAITQGAPSKQNVEYFTQQAYFAFQVIQVFLVTTLSSAATSTVTEIVKEPTKAMDLLASNLPKASNFFMSYVILQGLSISSGALLQIVPLILFYVLGAFLDGTVRKKWNRFCGLSSMQWGTAFPVYTNLAVITFSYSIISPLILLFAAVAFFLLYIAYLYNLTYVYQESPDARGIYYPRALFQTIVGIYIGQICLLGLFAVGKGWGPIVLQVIGICVTVLIHLHLSAAFDHLSKVIPVDTMKPLDGVSDTPSFKNIYKGIESTKVKKNTFGANIDMDGIKELPEFPIKKYHKRSESVTEQQVENSIFSENTFEYQFNPANEANADGHAINAENLIEDVPLLADGDTMKIPPAPWWKRFLKPHIYYSYKAVKSRLPEIYGLVDPDERVNDFDISHAYDYPAVSAQCPELWIPRDPFGFSKLLISDVSGVVEMNDENATIDENLKFTLRDVPPPYNDVKDEANGEANGEFDTASKENNPFADPKYKEEESRSAV", "sequence_length": 953, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a332052e13d7a4d1bdcfbc3013056ac7a065272d3a29e5f3afb79fc29e409a46", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q03516.json", "taxon_id": "559292", "uniprot_accession": "Q03516", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/10tm-putative-phosphate-transporter-extracellular-tail-ipr022257.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR022257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/10tm-putative-phosphate-transporter-extracellular-tail-ipr022257.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/phm7-ext-pf12621.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12621", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/phm7-ext-pf12621.yaml" } ], "pfam_ids": [ "PF02714", "PF12621", "PF13967", "PF14703" ], "protein_name": "Phosphate metabolism protein 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADSSSTSAFISTLIIYGLTAVVFVWLFLLLRPKNRRVYEPRSLKDIQTIPEEERTEPVPEGYFGWVEYLLSKPHSFLIQHTSVDGYFLLRYIGIVGSLSFVGCLLLLPILLPVNATNGNNLQGFELLSFSNVTNKNRFYAHVFLSWIFFGLFTYVIYKELYYYVVFRHAMQTTPLYDGLLSSRTVIVTELHKSIAQEGEMQMRFPKASNVAFAYDLSDLQELCKERAKNAAKYEAALNKVLNKCVKMTRNKTQKQLDKLYNNGTKPKDDLETYVPHKKRPKHRLGKLPLCLGGKKVNTLSYSSKRIGELNEEIHEKQADWASNDRQPACFIQFETQLEAQRCYQSVEAILGKKNFGKRLIGYSPEDVNWGSMRLSSKERHSRRAVANTIMVLLIIFWAFPVAVVGIISNVNFLTDKVPFLRFINNMPTFLMGVITGLLPTIALVVLMSLVPPFIVMLGKLSGCVTRQETDLYSQAWYYAFAVIQIFLVVTATSSASSTVDSIIDRPRSAMTLLANNLPKASNFYIMYFILKGLTGPTWTILQAVNLLLSKVLGRVLDSTPRQKWNRYNTLATPRMGIVYPGIEILVCIYICYSIIAPILLFFSTVMLTLLYVAYLYNLNYVFGFSFDLKGRNYPRALFQIFVGIYLSEVCLLGLFIMAKTWGPLVLEVFWIVVTALAHIYMKRKFIPLFDAVPLSAIRHARGEPGYSYPTSDLGLQEIKDIADEMKGKYEQDNTHGILTPVTKDDLKKANLIPDNDGSSENGTPSNPFESGSERASLSGSNAESDSIKKLNDTVIKKSSTLSSSTKDNNESTFVPEGEKFRKFHYSDVEALRNKRPYDEDDHSKHGPEGAVPVNADAGVIYSDPAAVMKEPQAFPPDVLETNTWTRRILQFFNPRRSYPFDSVRMRFPLVFNTSIEYDEEYLSSAYTDPCVREKDPIVWCCKDPLGVSKQQIQEARSNGLDVRDDFTRYDEKGKVIFTYNPPDYEPEAKK", "sequence_length": 991, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f76a38625177ea0ed959236bd6463eaad907cf9efa0cd58a7832bc4cce378f2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12252.json", "taxon_id": "559292", "uniprot_accession": "Q12252", "uniprot_release": "2026_03" } ], "pfam_id": "PF12621", "short_name": "PHM7_ext", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12635", "short_name": "DUF3780", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12636", "short_name": "DUF3781", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/flmr-ohkr-n-pf12640.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/flmr-ohkr-n-pf12640.yaml" } ], "pfam_ids": [ "PF12640", "PF29947" ], "protein_name": "UPF0489 protein C5orf22", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDSAGGRAGLRRYPKLPVWVVEDHQEVLPFIYRAIGSKHLPASNVSFLHFDSHPDLLIPVNMPADTVFDKETLFGELSIENWIMPAVYAGHFSHVIWFHPTWAQQIREGRHHFLVGKDTSTTTIRVTSTDHYFLSDGLYVPEDQLENQKPLQLDVIMVKPYKLCNNQEENDAVSSAKKPKLALEDSENTASTNCDSSSEGLEKDTATQRSDQTCLEPSCSCSSENQECQTAASTGEILEILKKGKAFVLDIDLDFFSVKNPFKEMFTQEEYKILQELYQFKKPGTNLTEEDLVDIVDTRIHQLEDLEATFADLCDGDDEETVQRWASNPGMESLVPLVQSLKKRMEVPDYEMVHQAGLTCDYSELPHHISTEQEIECLIQSVHYLLKNLPNPTLVTIARSSLDDYCPSDQVDTIQEKVLNMLRALYGNLDLQVYAAESPPS", "sequence_length": 442, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "17d10938b227debed393a0f9c86629b1a490bd84eb4fcae35ef3bb85c2002016", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q49AR2.json", "taxon_id": "9606", "uniprot_accession": "Q49AR2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/flmr-ohkr-n-pf12640.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/flmr-ohkr-n-pf12640.yaml" } ], "pfam_ids": [ "PF12640", "PF29947" ], "protein_name": "UPF0489 protein C5orf22 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNAPPQKRVYPKLPVWIVEDHHEVVQHIYRAIGSRHIPMKGIKMVHLDSHPDLLIPVNMPADTVYDKETLLRELSIENWIMPMVYAGHVSHVAWLHPYWAQQIREGQHCMCVGKDSSTTTIRVTSKDDYFLSDALYVPLDHLEHPKELHLHVIRVDPVVSSQTTKLENGQSGAKIPKAAQTQDDMQSKADTPCTSSSQPPDGSAASGNISETAKKKADDGSTSYITDKLLAVIEQTDPFILDIDLDFFSCKNPFKDMFSQEEFTLLKELYSFSKPQQDPDEEELLECVERRTRQLEDLEAAFADLLEDDGQETVERLAANPGMKSLFRLVHSLKNRPSPPDYEMVHQAGLTCDNSELPHHISSDEEIQQMITAVQLFLETLPKPTIVTISRSSLDEYCPAEQVDSIQIRVLDILESLFGCLDVHRDYESIPAESTSHTA", "sequence_length": 439, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f162995e521d8acf103f1171a26e86e5905ae63241448b7f3e2a23623d72d69d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7SZF1.json", "taxon_id": "7955", "uniprot_accession": "Q7SZF1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/flmr-ohkr-n-pf12640.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/flmr-ohkr-n-pf12640.yaml" } ], "pfam_ids": [ "PF12640", "PF29947" ], "protein_name": "UPF0489 protein C5orf22 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDTGGDRARLRRYTKLPVWVVEDHQEVLPFIYRAIGSKHLPDSNISFLHLDSHPDLLIPVNMPADTVFDKEALFGELSIENWIMPAVYAGHFSQVIWLHPTWAQQIREGKHCFLVGKDISTTTIRVTSTDSYFLSDGLFVPEDQLENRRPLQLDVILVEPYTLCSKQDDSDSVSSTKKPKLALGSGESSAAADGHSCSEGRRGDAVTPRSDHACQEPSCSRSGGQQSQNTATAGAILDILKTGDAFVLDIDLDFFSVKNPFKEMFTQDEYKILQELYQFKKPDSNLPEDGLVDVVEARTHQLEDLEAVFADLCDGDSEETVQSWASNPGMESLVPLVQSLKKRMEVPDYEMVHQAGLTCDYSELPHHISTEEEIEYLIQSVYFLLKSLPKPTLVTIARSSLDDYCPPEQVDMIQGKVLDVLHSLYGTLDTHLVYSEESPLS", "sequence_length": 442, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b79a6a6654d83552379dfbcb1a6c8f3f84be8b1bf54e44ec6129c3ce957e1ef2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BGC1.json", "taxon_id": "10090", "uniprot_accession": "Q8BGC1", "uniprot_release": "2026_03" } ], "pfam_id": "PF12640", "short_name": "FlmR_OhkR_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12644", "short_name": "DUF3782", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12646", "short_name": "DUF3783", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3784-pf12650.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12650", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3784-pf12650.yaml" } ], "pfam_ids": [ "PF12650" ], "protein_name": "Uncharacterized protein YitR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEISINYLLIVIALLFFVVAYFVGIKKQTWMLAGFNEARIRDKDRLARIAGYFFLNSGLFILLNSFISFQGQEQLIPPLILAYGAGVIIYVNKKLVE", "sequence_length": 97, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3ff6aab7024ce9871809af7075fb8134754991145103ff7c5d669dd86e91924e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O06753.json", "taxon_id": "224308", "uniprot_accession": "O06753", "uniprot_release": "2026_03" } ], "pfam_id": "PF12650", "short_name": "DUF3784", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12653", "short_name": "DUF3785", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12654", "short_name": "DUF3786", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12655", "short_name": "CDIF630_02480-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12663", "short_name": "DUF3788", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12664", "short_name": "DUF3789", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12668", "short_name": "DUF3791", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/tigr04086-family-membrane-protein-tigr04086.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR04086", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/tigr04086-family-membrane-protein-tigr04086.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3792-pf12670.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12670", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3792-pf12670.yaml" } ], "pfam_ids": [ "PF12670" ], "protein_name": "Uncharacterized membrane protein YrzE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDGFEQKEQKPFNTGREETIMEETKQVGKGILYGLIAIFSAMLLTSLAVSLLLTATSLEESSFNWLITAISFLSLFIGGFISGGKGKERGWMIGALTALSFSLIILLFQYLGFGKTFTAEQLIFHLGFLGVCMLGGIFGVNMRGNRSST", "sequence_length": 150, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5fd46d8d4873fc45741372b67b6ea118d63b031f9759d0ec7b48e77fbaba80e9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32051.json", "taxon_id": "224308", "uniprot_accession": "O32051", "uniprot_release": "2026_03" } ], "pfam_id": "PF12670", "short_name": "DUF3792", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12672", "short_name": "DUF3793", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12673", "short_name": "SipL", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12675", "short_name": "DUF3795", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12677", "short_name": "DUF3797", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Treponema pallidum (strain DSM 117211 / Nichols)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3798-pf12683.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12683", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3798-pf12683.yaml" } ], "pfam_ids": [ "PF12683" ], "protein_name": "Uncharacterized protein TP_0007", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLALAEDSTIKAIVVSQAVPGVSKAFGIIKSKRPDVLLFAGEPLEPVEMLQESADIVVSQDYLFGGYAVPWVAERMGARTLVHVSFPRHMSYPGLRVRRTVMRAACTDLGLSFAHEEAPDPVDGVSDGELEDFFHKTIVKWIKKYGKETLFYCTNDAHNRPLISALLKYGGMLIGATIFDYADALGVHYAELEDVYKIREKVEKSLVASAQRGALD", "sequence_length": 216, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cce1cdba9a66a306a18f701475596d6dd0fa99ddca88a35004541112d02ab449", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O83052.json", "taxon_id": "243276", "uniprot_accession": "O83052", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Treponema pallidum (strain DSM 117211 / Nichols)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3798-pf12683.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12683", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3798-pf12683.yaml" } ], "pfam_ids": [ "PF12683" ], "protein_name": "Uncharacterized protein TP_0013", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSQFLLKVWVVCVGALLCRCGGARAPQNTGGTKAVEDYHIGVMTGPGSHSSHDVVAAKRACAMYGAVGDGHRGCILHVTYPEDFVNRQDETVSRLLAFADDPLMGAIVVSEGIHGTAEAFNKIRAKRSDIMLFVGDPHEYPELIQKSADIVVSDDYAFGGYAIPWAAKKMGARTLVHVSFPRHLSKAELRTRRQVMEAVCADIGIEFASEEAPDPAGVRC", "sequence_length": 221, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2456c918b5b9086ae4e16e84f62b9f16899e032bb312c1a2867d95253a6596b2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O83057.json", "taxon_id": "243276", "uniprot_accession": "O83057", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Treponema pallidum (strain DSM 117211 / Nichols)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3798-pf12683.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12683", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3798-pf12683.yaml" } ], "pfam_ids": [ "PF12683", "PF27194" ], "protein_name": "Uncharacterized protein TP_0014", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRLRRLQIPQESGVEGARAFIGTHTKQWIGKYGKNTMFFCTNDTHRVSLMRELVSKDGMLLGANVFDCAEALGVEYADDEDVSGILERVESAVEEKRLVGRFGVNVSSHIFVSTLGLTEYARRILQNELREKDMRVALSDAFSLFSKGTRWRVAPYTDLLTGKEVSNHVSVFSDIHILGKFSLPVTDQEFPEKYRSIRFGRQ", "sequence_length": 202, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4167c89fbacaad18a212fb3d3a4cf9fe8d5f88e48b25da37fe4dfd3bec18d308", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O83058.json", "taxon_id": "243276", "uniprot_accession": "O83058", "uniprot_release": "2026_03" } ], "pfam_id": "PF12683", "short_name": "DUF3798", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/double-stranded-dna-5-3-dna-exonuclease-activity-go0051908.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051908", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/double-stranded-dna-5-3-dna-exonuclease-activity-go0051908.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/exodeoxyribonuclease-viii-nf007259.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/exodeoxyribonuclease-viii-nf007259.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/putative-exodeoxyribonuclease-8-pddexk-like-domain-ipr024432.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024432", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/putative-exodeoxyribonuclease-8-pddexk-like-domain-ipr024432.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3799-pf12684.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12684", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3799-pf12684.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/exonuc-viii-pf06630.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/exonuc-viii-pf06630.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P15032", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF06630", "PF12684", "PF30430" ], "protein_name": "Exodeoxyribonuclease 8", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "27e1844a59b68231c8b529445db08b199f4cc0873f217d105d63f287fbee99c6", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSTKPLFLLRKAKKSSGEPDVVLWASNDFESTCATLDYLIVKSGKKLSSYFKAVATNFPVVNDLPAEGEIDFTWSERYQLSKDSMTWELKPGAAPDNAHYQGNTNVNGEDMTEIEENMLLPISGQELPIRWLAQHGSEKPVTHVSRDGLQALHIARAEELPAVTALAVSHKTSLLDPLEIRELHKLVRDTDKVFPNPGNSNLGLITAFFEAYLNADYTDRGLLTKEWMKGNRVSHITRTASGANAGGGNLTDRGEGFVHDLTSLARDVATGVLARSMDLDIYNLHPAHAKRIEEIIAENKPPFSVFRDKFITMPGGLDYSRAIVVASVKEAPIGIEVIPAHVTEYLNKVLTETDHANPDPEIVDIACGRSSAPMPQRVTEEGKQDDEEKPQPSGTTAVEQGEAETMEPDATEHHQDTQPLDAQSQVNSVDAKYQELRAELHEARKNIPSKNPVDDDKLLAASRGEFVDGISDPNDPKWVKGIQTRDCVYQNQPETEKTSPDMNQPEPVVQQEPEIACNACGQTGGDNCPDCGAVMGDATYQETFDEESQVEAKENDPEEMEGAEHPHNENAGSDPHRDCSDETGEVADPVIVEDIEPGIYYGISNENYHAGPGISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLEPEEFSNRFIVAPEFNRRTNAGKEEEKAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKIIPEFHWIMDVKTTADIQRFKTAYYDYRYHVQDAFYSDGYEAQFGVQPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHRNLRTLSDCLNTDEWPAIKTLSLPRWAKEYAND", "sequence_length": 866, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "27e1844a59b68231c8b529445db08b199f4cc0873f217d105d63f287fbee99c6", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P15032.json", "taxon_id": "83333", "uniprot_accession": "P15032", "uniprot_release": "2026_03" } ], "pfam_id": "PF12684", "short_name": "DUF3799", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanothermobacter thermautotrophicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3800-pf12686.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12686", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3800-pf12686.yaml" } ], "pfam_ids": [ "PF12686" ], "protein_name": "Uncharacterized protein ORF2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSGNLFFGWADESSQNKGRYRAIGMVSHPAEFESKLEGDINNILDYVFDESGLKRRELKWNKIDIFRCRAYERIVDYFLEHTGLGNPPFRVDILRWDIEDSRHSIQGRDDNQNLQRMYYHLFSNVISKRWPSGDWCFFPDKTGSVDWGELASFLDLGGSKVDLNERFNIRSINEVDSKDNVLVQVADFFAGLSVFSKEKLGLYVDWKFEKRGQQRLVPVEKIDLSKKDRRRFKILSYFEEGCEKLKIGVVLDRSKGLWTPNPANSINFWHYEPQSDADKAPTR", "sequence_length": 284, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5d7e3ce2a596e7e6e51795a62dd495403ab870a07b24b050747d1b355087a3fe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P29571.json", "taxon_id": "145262", "uniprot_accession": "P29571", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanothermobacter thermautotrophicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3800-pf12686.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12686", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3800-pf12686.yaml" } ], "pfam_ids": [ "PF12686" ], "protein_name": "Uncharacterized protein ORF2'", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSSKLFFGWTDESSQNKGRYRAIGMVSHPAEFGSELEGDINSILDSVVDESGLKRRELKWNKIDIFRCRAYEKIVDYFLELSNLGNPPVRVDILRWDIEDSRHSIQGRDDNQNLQRMYYHLFSNVISKRWPSGDWCFFPDETGSVDWEEVAFFLDIGGSKVDLKEQFNILSINEVDSKDNVLVQVADFFAGLSVFSKEKFGLYVDWNYEECGQQRLVPVENVEFSKKDRKRFEILSYFNKRCKELKMGVSLDTSEGLWTPKPANSINFWHYEPQSDADKAPIR", "sequence_length": 284, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b016c2c3f141868fb13aa4fd544cfad85ca852f7e83d41fc09e727b9e6e30b72", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P29572.json", "taxon_id": "145262", "uniprot_accession": "P29572", "uniprot_release": "2026_03" } ], "pfam_id": "PF12686", "short_name": "DUF3800", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12687", "short_name": "DUF3801", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12702", "short_name": "Lipocalin_3", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12707", "short_name": "DUF3804", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12712", "short_name": "DUF3805", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12713", "short_name": "DUF3806", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3807-pf12720.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12720", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3807-pf12720.yaml" } ], "pfam_ids": [ "PF12720" ], "protein_name": "Uncharacterized protein C16H5.15", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSEITEGDLQKFHDEHFNAKAVNLWNVAFAQNDRGGNSESANVEYTQSVERYPDGTIRTLTDEQILWFRESEKRELMWKKEKEQLLKEKELRQKALDKERMVSSKPETNPKTPISLKELKDIEIYQNQFHYSAYEILEEEKILDNIFRKFTALPIKYWPATPIRG", "sequence_length": 166, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7821d46a577095c3114b02d308daa6918c4b8c8105b05c3e54f4430133ca6749", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9USY8.json", "taxon_id": "284812", "uniprot_accession": "Q9USY8", "uniprot_release": "2026_03" } ], "pfam_id": "PF12720", "short_name": "DUF3807", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12723", "short_name": "DUF3809", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12725", "short_name": "DUF3810", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/eisosome1-pf12757.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/eisosome1-pf12757.yaml" } ], "pfam_ids": [ "PF12757" ], "protein_name": "Eisosome protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLVSTVNDAERTDLLNSSGNRNGPVVETVTTTAVEEKPITTKSVRGFSVYHKGGGAQLSKEALYRAKVKYGIYQSPARSFSTGVAEPKVASDVAANLANDNKTTIEAYKRLFVDPNANTAARRSIVNGGPRVEDVVIPESHYGSHQAATRAYSVASVATDENARRLQSPQSPPATRAHSLKSANKAFYNTKLPEQVEVVPKQVGKKPMDMSKILSSAENRAQHRVTDRWDPVKADHGIRTSTQNLNRVRSTSLTGPIYKERKGVKEPSSKDASATQGDRGNYAQWAAFAVRDMDPTALTNKEFEERERAKRELLSQITSQQVLAKARENADKQLDAIDANDVHRVLFGNDAYNRAAIEIAQRNAQRQAGETDVNEGKINIGGGLWLSPDDVHTIAREMVDPVLGEVHQRADDQRATDVDIKERNDYVTNEWNAWTAMHQTKENNNEALLVNSQNKRTREADSARSEAEKSFTELCDRMDKQVAERNDLLNQTKQAREQLERETEEKLAQNKEDNKTALRDLKGQHAKELEEAREEQRRLVQPYEERLEEVNREHESLVQERTAINEEIARLHESIKEHQYQISKYEREIKSHEEQNASAEEELKKLETDREGIQSHYNDNVVVNANKAKEQALLSSEEARLQNLKVDAIINERKTELNRTEQELQREKLNMLEAMRKTAEARGDENIDEERVKQLIGMTSTEYVEEQKKLQKAAGKAEKPKASTADKGQALDKALAHDQGDQEANTKDFKEGAETKAKESKGKPSQSVAKAIATSPTKTEAKAEPSTSKGKSNGVGTHPDNASGISQISDTLENGKHLSEEDLKELAEDAEQRVSGEPQPSYFKEVF", "sequence_length": 848, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "33e51b41c4546289d5911376d11b2d56a3be53aab9cc79633ee3167ab4d81f1d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C5DX05.json", "taxon_id": "559307", "uniprot_accession": "C5DX05", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/eisosome1-pf12757.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/eisosome1-pf12757.yaml" } ], "pfam_ids": [ "PF12757" ], "protein_name": "Uncharacterized protein YKL050C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLISALQTTDVESVQTSPEQITERKAVRVSTLQESLHSSEMHRAAPETPRSISNSVHKLKTIYSTYQQSGQPLSKEAIFRAKQKYGILNTPANYKTLGLGDSKSESVDLAARLASKRTKVSPDDCVETAIEQKARGEAFKVTFSKIPLTPPEDVPITVNLGLKGRRDFLTRLAAQKALAFSPSLDNSMKGTSDSSSVKKKRFSGAPIGNEFDANLVNPQHPAGFKSLDLSKVLDGAERRAISRVNDRLYPQKVNFKNGLQSSDQSGVSKANKEVFKKGTLEKLEHSAEQFLESHAGNERQRLSDQQYMCAKGAADAVKDLDPKTLEDPDFAAREAQKKLYIKQVASPVVLNEAQKLANRKLQDIDSRDTYMLLFGNQAYNKLAVNIALQHYSVKQEEKKKIYLGGGLWMTPEEVNAVAKKLISPVVNEIDERASRQRDVDKDIERRSRVLDQEYEDGNSMERAKEQNDGQLLLAMASKQQQEKEAKKAEEGQRYDQFVQKMNIKLQQKEKELENARENRENLRNELQERLSKNLSGENDELNDWNDACERDLKNSSIEHYYAVRSHFDNLGNSERGYDELLEERSKIQVEIERLVASIAEHKTAIHGFGETADAGGAIPAVQKQKIPTRKDLLDATVNDPLVISAEMAKEEAEMATEECMLKELQVDEMIIIRNIMLRECEKKLEEEKETAKRSRRGTEESKNNSNFSRDVIMSTPDNNEKVTPIGKSASPKDVVKSRFLSTYNTGKDIDSSASARSITGVSGVLDDGPKTPTSNKENELIDDEVKSYKVHQAVDGTGEDSIANKRDKSSRPAANSGGSITIEQFLFNKNADKQGLSKTESVTMKREPVVDQMDSKKGHDFTHCNDNGRRSFSGFSQGSIENDYSNEVTDDQDDQEGSEIRVRDSNDSNTSPKESFFKEVI", "sequence_length": 922, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b89f958a0f18640cc372735d7462e6d5b80a73fe4e25f9ad4e88da50c6c3588d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P35736.json", "taxon_id": "559292", "uniprot_accession": "P35736", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/eisosome-assembly-go0070941.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070941", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/eisosome-assembly-go0070941.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/eisosome1-pf12757.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/eisosome1-pf12757.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q05050", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12757" ], "protein_name": "Eisosome protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "59213c00e0da3fa08d66276a307ba44295894db7f01a855798afb6d681576d97", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSLISAVEDRDIHNIGKTSGGGSRTSSITSSKKSLKHGSKSLRKPKVYQTTGEPLSREALYKAKLKYGVYQSPAQSYSIGVSDAHAASDKAANLAHDNQTTVEAYKRMFIDPNATKAASKMGPKVVRNNSITSATSKTSKESQTKRKSKESPGAAASKAYSMTMETTSLSSQTNSRSYSITSASSVLSGASGSFNSTVNPKPKTLNLEKVLVGAEKKAESRIKERWEPEKTNFQYGVKTDEHGNLNQFSFSNEMMNNIMAKVDAPKAQDLQKVKKVSAEKEAKSMKFALGAANAVKDMHPGEDIDKSIALKAQKRETYLSQLTSQQVLTLARANVDRQLDIIEKSDMHRKLFTNMEYNKAAVAVAQSNHQKKTEFHNKINMGGGLFLSPEDITKIASGLISPVLGEVSERAEAQRAMDEEIAERTEAYNKSSNEWETMERSIISNDAKVLTTTANRHQTEKKTSQEKIKASFDALVARMDTKVAERETLLEDTKSKEIEFKKQMQQELKDEKARLDQDLEEWGKKCEQDITEARKEQEELLKPYHDDLANAEAEHKTLVEERDEINAEISRLQDAIVDHKRKISGYGNDLDAQKNRNIREDDKLLELGQTKESLESHLNDDVIILANKAKEQAELSTKEARLKQLEVDSLINERKSELNATEIELKKEKLNLLEAMKDVASARGDDKIDEEKVKKLIGMTSEEYLTQNKSVEKNVEDLPTQLEKIEEGDELKKEEIVGAETKNSGGDGVPVSTAAKEATETSSAVQTKEPEEKISIGNKSSGKEDANDCKSAEHSKEISVSQKAGNNKSLGVSPDSLEHTFSGFSQGSSIEDDQDAISNQEKK", "sequence_length": 843, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "59213c00e0da3fa08d66276a307ba44295894db7f01a855798afb6d681576d97", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q05050.json", "taxon_id": "559292", "uniprot_accession": "Q05050", "uniprot_release": "2026_03" } ], "pfam_id": "PF12757", "short_name": "Eisosome1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3813-pf12758.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12758", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3813-pf12758.yaml" } ], "pfam_ids": [ "PF12758" ], "protein_name": "Uncharacterized protein YizC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNELFQQAKSFVQQAVMVTNGFEEGDQEQAILRAKNAVSSAYANSTDAERQQLHQFQNQLDKLQ", "sequence_length": 65, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bbd37348bce06c66d06a8a3f491ccb8e48802109cb4113a596437b37e142328a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0H3Y5.json", "taxon_id": "224308", "uniprot_accession": "C0H3Y5", "uniprot_release": "2026_03" } ], "pfam_id": "PF12758", "short_name": "DUF3813", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "P07001", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/nad-phosphorylation-and-dephosphorylation.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:NADPHOS-DEPHOS-PWY", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/nad-phosphorylation-and-dephosphorylation.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/aladh-pnt-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00836", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/aladh-pnt-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/aladh-pnt-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00837", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/aladh-pnt-2.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pntb-4tm-pf12769.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pntb-4tm-pf12769.yaml" } ], "pfam_ids": [ "PF01262", "PF05222", "PF12769" ], "protein_name": "NAD(P) transhydrogenase subunit alpha", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQSSQLYGTNLVNLLKLLCKEKDGNITVDFDDVVIRGVTVIRAGEITWPAPPIQVSAQPQAAQKAAPEVKTEEKCTCSPWRKYALMALAIILFGWMASVAPKEFLGHFTVFALACVVGYYVVWNVSHALHTPLMSVTNAISGIIVVGALLQIGQGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFRKN", "sequence_length": 510, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a450928c62f12f1c393743e923286e406bb8bd7fcdf564013465536e4f76be70", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P07001.json", "taxon_id": "83333", "uniprot_accession": "P07001", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aladh-pnt-c-pf01262.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01262", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aladh-pnt-c-pf01262.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aladh-pnt-n-pf05222.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05222", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aladh-pnt-n-pf05222.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/aladh-pnt-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00836", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/aladh-pnt-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/aladh-pnt-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00837", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/aladh-pnt-2.yaml" } ], "pfam_ids": [ "PF01262", "PF02233", "PF05222", "PF12769" ], "protein_name": "NAD(P) transhydrogenase, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANLLKTVVTGCSCPFLSNLGSCKVLPGKKNFLRTFHTHRILWCSAPVKPGIPYKQLTVGVPKEIFQNEKRVALSPAGVQALVKQGFNVVVESGAGEASKFSDDHYRAAGAQIQGAKEVLASDLVVKVRAPMLNPTLGVHEADLLKTSGTLISFIYPAQNPDLLNKLSKRKTTVLAMDQVPRVTIAQGYDALSSMANIAGYKAVVLAANHFGRFFTGQITAAGKVPPAKILIVGGGVAGLASAGAAKSMGAIVRGFDTRAAALEQFKSLGAEPLEVDLKESGEGQGGYAKEMSKEFIEAEMKLFAQQCKEVDILISTALIPGKKAPILFNKEMIESMKEGSVVVDLAAEAGGNFETTKPGELYVHKGITHIGYTDLPSRMATQASTLYSNNITKLLKAISPDKDNFYFEVKDDFDFGTMGHVIRGTVVMKDGQVIFPAPTPKNIPQGAPVKQKTVAELEAEKAATITPFRKTMTSASVYTAGLTGILGLGIAAPNLAFSQMVTTFGLAGIVGYHTVWGVTPALHSPLMSVTNAISGLTAVGGLVLMGGHLYPSTTSQGLAALATFISSVNIAGGFLVTQRMLDMFKRPTDPPEYNYLYLLPAGTFVGGYLASLYSGYNIEQIMYLGSGLCCVGALAGLSTQGTARLGNALGMIGVAGGLAATLGGLKPCPELLAQMSGAMALGGTIGLTIAKRIQISDLPQLVAAFHSLVGLAAVLTCIAEYIIEYPHFATDAAANLTKIVAYLGTYIGGVTFSGSLVAYGKLQGILKSAPLLLPGRHLLNAGLLAGSVGGIIPFMMDPSFTTGITCLGSVSALSAVMGVTLTAAIGGADMPVVITVLNSYSGWALCAEGFLLNNNLLTIVGALIGSSGAILSYIMCVAMNRSLANVILGGYGTTSTAGGKPMEISGTHTEINLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRESYQK", "sequence_length": 1086, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3f20cfae6898e06e00df286e1c6fc730379b1d96b25991a270f41095ca674b37", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P11024.json", "taxon_id": "9913", "uniprot_accession": "P11024", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aladh-pnt-c-pf01262.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01262", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aladh-pnt-c-pf01262.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aladh-pnt-n-pf05222.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05222", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aladh-pnt-n-pf05222.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/aladh-pnt-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00836", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/aladh-pnt-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/aladh-pnt-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00837", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/aladh-pnt-2.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pntb-4tm-pf12769.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pntb-4tm-pf12769.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q13423", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01262", "PF02233", "PF05222", "PF12769" ], "protein_name": "NAD(P) transhydrogenase, mitochondrial", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6a99d3112df79557a7417031316e761d2d1abc35b67e36256e7d3be0b0493ab9", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MANLLKTVVTGCSCPLLSNLGSCKGLRVKKDFLRTFYTHQELWCKAPVKPGIPYKQLTVGVPKEIFQNEKRVALSPAGVQNLVKQGFNVVVESGAGEASKFSDDHYRVAGAQIQGAKEVLASDLVVKVRAPMVNPTLGVHEADLLKTSGTLISFIYPAQNPELLNKLSQRKTTVLAMDQVPRVTIAQGYDALSSMANIAGYKAVVLAANHFGRFFTGQITAAGKVPPAKILIVGGGVAGLASAGAAKSMGAIVRGFDTRAAALEQFKSLGAEPLEVDLKESGEGQGGYAKEMSKEFIEAEMKLFAQQCKEVDILISTALIPGKKAPVLFNKEMIESMKEGSVVVDLAAEAGGNFETTKPGELYIHKGITHIGYTDLPSRMATQASTLYSNNITKLLKAISPDKDNFYFDVKDDFDFGTMGHVIRGTVVMKDGKVIFPAPTPKNIPQGAPVKQKTVAELEAEKAATITPFRKTMSTASAYTAGLTGILGLGIAAPNLAFSQMVTTFGLAGIVGYHTVWGVTPALHSPLMSVTNAISGLTAVGGLALMGGHLYPSTTSQGLAALAAFISSVNIAGGFLVTQRMLDMFKRPTDPPEYNYLYLLPAGTFVGGYLAALYSGYNIEQIMYLGSGLCCVGALAGLSTQGTARLGNALGMIGVAGGLAATLGVLKPGPELLAQMSGAMALGGTIGLTIAKRIQISDLPQLVAAFHSLVGLAAVLTCIAEYIIEYPHFATDAAANLTKIVAYLGTYIGGVTFSGSLIAYGKLQGLLKSAPLLLPGRHLLNAGLLAASVGGIIPFMVDPSFTTGITCLGSVSALSAVMGVTLTAAIGGADMPVVITVLNSYSGWALCAEGFLLNNNLLTIVGALIGSSGAILSYIMCVAMNRSLANVILGGYGTTSTAGGKPMEISGTHTEINLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRESYQK", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pntb-4tm-pf12769.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pntb-4tm-pf12769.yaml" } ], "pfam_ids": [ "PF01262", "PF02233", "PF05222", "PF12769" ], "protein_name": "NAD(P) transhydrogenase, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/threonine-serine-exporter-nf007391.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/threonine-serine-exporter-thre-ipr024528.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024528", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/threonine-serine-exporter-thre-ipr024528.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/thre-2-pf12821.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12821", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/thre-2-pf12821.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0ADD2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12821" ], "protein_name": "Probable succinate transporter subunit YjjB", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "af02cd151da2de1d67a0e2868e07deed001baac3fccc65c0a09bcc2e0027f905", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGVIEFLLALAQDMILAAIPAVGFAMVFNVPVRALRWCALLGSIGHGSRMILMTSGLNIEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISAYTAMISAVKISQLGYSEPLMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV", "sequence_length": 157, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "af02cd151da2de1d67a0e2868e07deed001baac3fccc65c0a09bcc2e0027f905", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P0ADD2.json", "taxon_id": "83333", "uniprot_accession": "P0ADD2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/threonine-serine-exporter-like-n-terminal-domain-ipr010619.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010619", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/threonine-serine-exporter-like-n-terminal-domain-ipr010619.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/thre-pf06738.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/thre-pf06738.yaml" } ], "pfam_ids": [ "PF06738", "PF12821" ], "protein_name": "Pheromone-regulated membrane protein 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIVSFGDATTRTSEVQLVRCTQGLNLWKLHQVHAVYKRVVHDTLGADEGNALLDQILADTNLYPPWMCVLLYAFCSAMVTPYAFGGDWVNLAISFFMGLCVGSLQFILSQKSYMYSNVFEISASIVVSFCGRAFGSIPRSHICFGAVTQGSLALILPGYIILCGALELQSRSLVAGAVRMFYAIIYSLFLGFGITLGSALFGWMYHNATNEISCPQLISPWFRFLFVPAFTISISLLNQAHISQLPVMVFISCTGYVVTYWAGKHFANSTEFTAALAAFVIGVLGNLYSRIWKGLAVSAMLPAIFVQVPSGIASQNSLLSGLQSANTIVNANETITTSTSDPSSSMSFGMTMIQVCVGISVGLFASSLFVYPFGKKKTGLFSL", "sequence_length": 383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5ba648c012e2cf735831798cfb4221acf38aa6bc2d76dc3a84132c3110c58916", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P42946.json", "taxon_id": "559292", "uniprot_accession": "P42946", "uniprot_release": "2026_03" } ], "pfam_id": "PF12821", "short_name": "ThrE_2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lactococcus lactis subsp. cremoris (strain NZ9000)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ecf-trnsprt-pf12822.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12822", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ecf-trnsprt-pf12822.yaml" } ], "pfam_ids": [ "PF12822" ], "protein_name": "Riboflavin transporter RibU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKTRRMVLIAMLAALSTILLLPILQFPLLPGIDFMKVELSIIPVLIGVFTLGLGDGFIILFIRSVLWYLLFNQGPSTWIGVPMNFVALGIFMAIVWFFTKKKFSIKNYTVGIVLATIASVLVMMVLNVFYALPLYRLAAGFDVDKIFAGATHLFNMGSLSVTLNPTYLLTVVLPFNALQYIIFALVFGLIVTVFKKNKVVKFYNA", "sequence_length": 206, "sequence_origin": "UNIPROT_FETCH", 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"cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/riboflavin-transport-go0032218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/riboflavin-transport-go0032218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ecf-trnsprt-pf12822.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12822", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ecf-trnsprt-pf12822.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-10-1760-20-1-10-1760-20.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.1760.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-10-1760-20-1-10-1760-20.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P50726", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12822" ], "protein_name": "Riboflavin transporter FmnP", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "fbee2d1e92c7da1e42d6479c4b90a0d4d60bda961efab48afc53932a696c6381", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKVKKLVVVSMLSSIAFVLMLLNFPFPGLPDYLKIDFSDVPAIIAILIYGPLAGIAVEAIKNVLQYIIQGSMAGVPVGQVANFIAGTLFILPTAFLFKKLNSAKGLAVSLLLGTAAMTILMSILNYVLILPAYTWFLHSPALSDSALKTAVVAGILPFNMIKGIVITVVFSLIFIKLKPWIEQQRSAHIH", "sequence_length": 190, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "fbee2d1e92c7da1e42d6479c4b90a0d4d60bda961efab48afc53932a696c6381", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P50726.json", "taxon_id": "224308", "uniprot_accession": "P50726", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ecf-trnsprt-pf12822.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12822", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ecf-trnsprt-pf12822.yaml" } ], "pfam_ids": [ "PF12822" ], "protein_name": "Riboflavin transporter RibU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSIKKISFVGIFSALATLVMFLEFPIFPQASFLKYDPSEIPALIVSFLLGPGVGMFVVLVKDILFFLMKSGDPVGIAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFATAFALGLNALIVPLYFEAPFELYLKFFPFILAFNLVKFGIDSVVTFFVYKKVSSILKLETVEGRSNNG", "sequence_length": 183, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "329f02bcd23a1a9ad999dc0b97c490830dcbeb36fe287c4d5eeab036216b7921", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9X1G6.json", "taxon_id": "243274", "uniprot_accession": "Q9X1G6", "uniprot_release": "2026_03" } ], "pfam_id": "PF12822", "short_name": "ECF_trnsprt", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3817-transmembrane-ipr023845.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023845", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3817-transmembrane-ipr023845.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/duf3817-domain-containing-protein-tigr03954.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR03954", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/duf3817-domain-containing-protein-tigr03954.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3817-pf12823.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3817-pf12823.yaml" } ], "pfam_ids": [ "PF12823" ], "protein_name": "Uncharacterized membrane protein YdzA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLHTPIGRLRTMGFIEGMSLLILLFIAMPLKYWAGLPLAVTIVGSVHGGLFILYLLVLAYATFSVKWPLKWSAAGFIAAFVPFGNFLYDRGLRNYK", "sequence_length": 96, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a3c7990d6a594318f8ea73f577a2261a3677fa1a7961d77390ec573915c0b456", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31485.json", "taxon_id": "224308", "uniprot_accession": "O31485", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3817-pf12823.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3817-pf12823.yaml" } ], "pfam_ids": [ "PF12823" ], "protein_name": "Uncharacterized protein Mb1377c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAPETPAAQHAEPAIAVERIRTALLGYRIMAWTTGLWLIALCYEIVVRYVVKVDNPPTWIGVVHGWVYFTYLLLTLNLAVKVRWPLGKTAGVLLAGTIPLLGIVVEHFQTKEIKARFGL", "sequence_length": 120, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "84eea57bbe0edfe298a59f1c9ce91391217063fa18bb53d69b5aae877d1c9c33", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A5E8.json", "taxon_id": "233413", "uniprot_accession": "P0A5E8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium leprae (strain TN)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3817-pf12823.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3817-pf12823.yaml" } ], "pfam_ids": [ "PF12823" ], "protein_name": "Uncharacterized protein ML1176", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTRPETPQAPDFDFEKSRTALLGYRIMAWTTGIWLIALCYEIVSHLVFHHEIRWIEVVHGWVYFVYVLTAFNLAIKVRWPIGKTVGVLLAGTVPLLGIIVEHFQTKDVKTRFGLRHSRT", "sequence_length": 119, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3fdf1da1e86369eff587a9ca14a0ff50fe48b3bf990ac314d60a2b3932f367a4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54133.json", "taxon_id": "272631", "uniprot_accession": "P54133", "uniprot_release": "2026_03" } ], "pfam_id": "PF12823", "short_name": "DUF3817", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3818-pf12825.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3818-pf12825.yaml" } ], "pfam_ids": [ "PF12825", "PF12828" ], "protein_name": "Uncharacterized protein C663.15c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSLTSILLLLELQHEFSGLKVPGRLAKFGPPFRPSEEFADAEDSPVMKMIAQSYIFTPTLPGVNKAPPEFWSDKLQPLLETIGKHNLSDSYDHGRVSKRKMVGFAVVVVLHVLSKGLLGKATPLSEDRKPTSNNEEEDDADEAKSSNADSSTDSVQKSLANVNMDDANGPERLHYPSVKRLREAYSLLVYGDGLQQALDRISVSEDVDSWDEPLRSVIENIRYTIAVILHFSFVTVDAIPESPHLVSNRKGPEGVVERLYNRIPWFLTRQVLRVGNAGLLMSGLTRLFLMKPLSWFGESRNLLQTMLAGIFNADLEHSESTMVETDAEFEDDAKWETMRKALQWFTQLSRTEQDDVRSQSINKELNITIAILEAYEAQQTETTETEGVDKEDSDKASSVQGNEDEVPDTASETEHSEIEDFHFDPYSEKGVHIAMRYFDAALTHRDRECLIHDLCDNDQLNDVVREFMNAFYNIIYEAHQAADFSQAIYDFQYFLWDVIQLSKAGAPLVKFINLVERYQSCFVRFIHRLVVNAPDLCGEWCDWYRHCLKQFSVEVKTPDAVDVAHKALNTLDEETKHQVLEEIGDYVKELDEESKKAIENKDSTSEWLLHLYNFFGSAIITPTTAHGVPQPQLPNCGMKLNRTKEKLLTPFRNLLMEQLNELQAKNQETPSEMTSTE", "sequence_length": 678, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "85c4f05f2fbe7b1b941c0f269054b244b61a06fba27c4f5107782ba29cc37298", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O74521.json", "taxon_id": "284812", "uniprot_accession": "O74521", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/the-phosphoinositide-binding-phox-homology-domain-of-uncharacterized-f-cd06869.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd06869", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/the-phosphoinositide-binding-phox-homology-domain-of-uncharacterized-f-cd06869.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/px-associated-domain-ipr024555.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024555", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/px-associated-domain-ipr024555.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/px-domain-containing-protein-lec1-like-c-terminal-ipr024554.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024554", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/px-domain-containing-protein-lec1-like-c-terminal-ipr024554.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3818-pf12825.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3818-pf12825.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pxb-pf12828.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12828", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pxb-pf12828.yaml" } ], "pfam_ids": [ "PF00787", "PF12825", "PF12828" ], "protein_name": "PX domain-containing protein LEC1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MITQDTPALNPTEEHYLKRELLRCQLDYEIGKLNDQFALRKFGYPFSPNDPTAPQPISNNDSSPVLGGKGHFSVNYPMLSYVLQEFISTFPLLSTNLLVDEKFWQSKVQVFFEHFMSLGFSESYDREEASKRKKVSKKLSKVILLLFNSGVGSFQEQAYYNEDKFVLQSGQARKRSNIEKFAMPTRENLENLLTNESVFINGWDVNIISVFNKNSRKCTESVDNDKSSKSTPTSSPKSHAIKSFASTSKWMKNAFNNTINSTINSMPESSASLFSKLSLGVPSTKSKQSRKHHYFLIKIKKQDDDDQDNSNEENSNLDHHAGYFYVTRTYSDFKKLSHDLKSEFPGKKCPRLPHRNKKVTSMITKTEVLHNGQTKSAAREKIVNTFDTDLQSASESDNSSFLQTTNELSATETVLTEKETETLRKNILNEIKEEDNIDEDEYEEEGEGEESDFDEYKDASDSKINTLVGEKMRTSLRQYLRTLCKDAEVSQSSSIRRFFLSGPNLDIKDINPKIADDIRNRALIDVSNLENQIRFQQMALEKSLKLQDSMKDFKTSLLKDEKYLMSLLVEIKDNTKVEDLSPLLQDFVEWCKIYISSMIYQMFLGNDNSYELYTQIRRLHKLMPYTVMGQIMKFTNPIAIMRGMIELFMAQPFGGHSLLQTMFSTILTDDLKTQKVAIKELERKIAEMDPGASVVTKCLKDFVFNNDTKDEHDTKLFTMDAVNAESESMNMPVPLIVLMKSAAANLIPDEVVAGLIESYSSWKLQKEDTDALNVTSEDQSGIYFTHVKDLWQLYIKEHDKQLMRQLWQDPELTQMLKAIVTMIYEPMVKIFKVARMDVALKNFEKFMSDLIRLVDDVINGQLGVSTQFDVVEEIHNLVTKHQDAFFEFIHDVYLNDSEGIFEGFITWITTIVKFLQKSKFGGPSERIDFNKLICRDDIDIDVKLLKVQVNNVLNKKIGARKIYKKLLDLKVKQGTKQNNKHAAGILQKNWSDINSLVMPSSSGSFGLGDGDLVDLDLDTGDYDFLHKENEVELEKQYKDLLNLVVDESEIDKLRSQVFAQELKNYLEAQIAKK", "sequence_length": 1073, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "45dd99f5ad849bd2c4e5734282140ece3ae8af88fdb810b890a576171cab4fe7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q06839.json", "taxon_id": "559292", "uniprot_accession": "Q06839", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3818-pf12825.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3818-pf12825.yaml" } ], "pfam_ids": [ "PF00787", "PF12825", "PF12828" ], "protein_name": "PX domain-containing protein C1450.12", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTASPEEIDALKRHYLKKELFSLLIADELNFVSEPTNLDHLGSPFVEKGKSVIPYEKSQIPVLRFIFKRFILTFPFLDPDSQNQLWNVNFRNLLKSLSKSNVSVLPDDSDATHLHKWLLKFQNMLTLLMSRAFHSIQDEKNINIELLDTPKLEKDLHKSELQQKPNILEAYVLGVRQSTQAKMLRTKRVYEYLIKVSYEENTFFIARKYSDFSHFHHLLLKSYPNAYVPRLPPKDDHDTYLNSSEDSTLSPLPSRSSDTNDPQSDSQHVLRQERMRIELRQYIKNILNDDELHLTEEVLSFLTDDPVTLTASELTDINFRQELDVIRQLEQQKFVEIASQRAKELDVYMEEFKRSLTENNGFTTLFTELKEKNSISELSPSLQKTIEWARVNLASTIYDTFIGKEKSLETYLQIKKMHQLFPYTVIKNIMRFSNPLSVMKRILDTLLAQPFGMKSLFQRLLSISLNENVRAIHKLISRYEARIVSPEILTKIQEQVENPCKAAREVLEKKQMKRHDYLYFILISDDVPPKLPDNLIRRVYAERTAWKAALDSEDYPTDPTVIRRSKRYGYMMKLMHLYAKQFNKRRSISLISEGATGEIMKSMVDSPELNPNILVEQFIDLVRRHEDSFYDFVHRVYLHDSGLFASLMEWIENIIGFLRQGTSAPIDMDLVVDALDEESRQALDVELNKLLKWNQRKKSALFLRKTTKYIPGEETSLPVTMDELGIDEEIMAELRGDEDDQDENDQVTKVEEEHMEDDDSVEEFDPIIEERQRMKRKANRPANIIPPKPKLRTVKTLLPAFKEQVYPILHKFVSENEKDI", "sequence_length": 821, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "82a14115a06827eba6ada1cc223268fb7fca294d1cf47055747079f6287c2f12", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y7N9.json", "taxon_id": "284812", "uniprot_accession": "Q9Y7N9", "uniprot_release": "2026_03" } ], "pfam_id": "PF12825", "short_name": "DUF3818", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/cnot1-1st-pf22940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/cnot1-1st-pf22940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/not1-connector-pf23590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/not1-connector-pf23590.yaml" } ], "pfam_ids": [ "PF04054", "PF12842", "PF16415", "PF16417", "PF16418", "PF22940", "PF23590" ], "protein_name": "CCR4-NOT transcription complex subunit 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/cnot1-ttp-bind-pf16417.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/not1-connector-pf23590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/not1-connector-pf23590.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/not1-pf04054.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04054", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/not1-pf04054.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A5YKK6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04054", "PF12842", "PF16415", "PF16417", "PF16418", "PF22940", "PF23590" ], "protein_name": "CCR4-NOT transcription complex subunit 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ebd6aeb019f346337b1e65cceae8144b40b7f749bbb699ea2df3f889b776a371", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQTQFLIQECALLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLKLSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIVQFGVREVTAAQVARVLGMMARTHSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFCFADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAGSVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMTSLSIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGGLGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQAQAQVPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLVATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKKDVKQPEELPPITTTTTSTTPATNTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELEQHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS", 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"record_id": "Pfam:PF16418", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/cnot1-heat-pf16418.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/cnot1-ttp-bind-pf16417.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16417", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/cnot1-ttp-bind-pf16417.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/not1-pf04054.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04054", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/not1-pf04054.yaml" } ], "pfam_ids": [ "PF04054", "PF12842", "PF16415", "PF16417", "PF16418", "PF16419", "PF25097" ], "protein_name": "General negative regulator of transcription subunit 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSATYRDLNTASNLETSKEKQAAQIVIAQISLLFTTLNNDNFESVEREIRHILDRSSVDIYIKVWERLLTLSSRDILQAGKFLLQENLLHRLLLEFAKDLPKKSTDLIELLKERTFNNQEFQKQTGITLSLFIDLFDKSANKDIIESLDRSSQINDFKTIKMNHTNYLRNFFLQTTPETLESNLRDLLHSLEGESLNDLLALLLSEILSPGSQNLQNDPTRSWLTPPMVLDATNRGNVIARSISSLQANQINWNRVFNLMSTKYFLSAPLMPTTASLSCLFAALHDGPVIDEFFSCDWKVIFKLDLAIQLHKWSVQNGCFDLLNAEGTRKVSETIPNTKQSLLYLLSIASLNLELFLQREELSDGPMLAYFQECFFEDFNYAPEYLILALVKEMKRFVLLIENRTVIDEILITLLIQVHNKSPSSFKDVISTITDDSKIVDAAKIIINSDDAPIANFLKSLLDTGRLDTVINKLPFNEAFKILPCARQIGWEGFDTFLKTKVSPSNVDVVLESLEVQTKMTDTNTPFRSLKTFDLFAFHSLIEVLNKCPLDVLQLQRFESLEFSLLIAFPRLINFGFGHDEAILANGDIAGINNDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRGFVLDVAFRIIMRFAKEPPESKMFKFAVQAIYAFRIRLAEYPQYCKDLLRDVPALKSQAQVYQSIVEAATLANAPKERSRPVQEMIPLKFFAVDEVSCQINQEGAPKDVVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSGLLHQFMVNVTLRQLFVLLSTKDEQAIDKKHLKNLASWLGCITLALNKPIKHKNIAFREMLIEAYKENRLEIVVPFVTKILQRASESKIFKPPNPWTVGILKLLIELNEKANWKLSLTFEVEVLLKSFNLTTKSLKPSNFINTPEVIETLSGALGSITLEQQQTEQQRQIILMQQHQQQMLIYQQRQQQQQQRQQQQQHHISANTIADQQAAFGGEGSISHDNPFNNLLGSTIFVTHPDLKRVFQMALAKSVREILLEVVEKSSGIAVVTTTKIILKDFATEVDESKLKTAAIIMVRHLAQSLARATSIEPLKEGIRSTMQSLAPNLMSLSSSPAEELDTAINENIGIALVLIEKASMDKSTQDLADQLMQAIAIRRYHKERRADQPFITQNTNPYSLSLPEPLGLKNTGVTPQQFRVYEEFGKNIPNLDVIPFAGLPAHAPPMTQNVGLTQPQQQQAQMPTQILTSEQIRAQQQQQQLQKSRLNQPSQSAQPPGVNVPNPQGGIAAVQSDLEQNQRVLVHLMDILVSQIKENATKNNLAELGDQNQIKTIIFQILTFIAKSAQKDQLALKVSQAVVNSLFATSESPLCREVLSLLLEKLCSLSLVARKDVVWWLVYALDSRKFNVPVIRSLLEVNLIDATELDNVLVTAMKNKMENSTEFAMKLIQNTVLSDDPILMRMDFIKTLEHLASSEDENVKKFIKEFEDTKIMPVRKGTKTTRTEKLYLVFTEWVKLLQRVENNDVITTVFIKQLVEKGVISDTDNLLTFVKSSLELSVSSFKESDPTDEVFIAIDALGSLIIKLLILQGFKDDTRRDYINAIFSVIVLVFAKDHSQEGTTFNERPYFRLFSNILYEWATIRTHNFVRISDSSTRQELIEFDSVFYNTFSGYLHALQPFAFPGFSFAWVTLLSHRMLLPIMLRLPNKIGWEKLMLLIIDLFKFLDQYTSKHAVSDAVSVVYKGTLRVILGISNDMPSFLIENHYELMNNLPPTYFQLKNVILSAIPKNMTVPNPYDVDLNMEDIPACKELPEVFFDPVIDLHSLKKPVDNYLRIPSNSLLRTILSAIYKDTYDIKKGVGYDFLSVDSKLIRAIVLHVGIEAGIEYKRTSSNAVFNTKSSYYTLLFNLIQNGSIEMKYQIILSIVEQLRYPNIHTYWFSFVLMNMFKSDEWNDQKLEVQEIILRNFLKRIIVNKPHTWGVSVFFTQLINNNDINLLDLPFVQSVPEIKLILQQLVKYSKKYTTSEQDDQSATINRRQTPLQSNA", "sequence_length": 2108, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8543c12d2465930a511e5025776ca7f6980d008d5270ed82a1ead4a7a8ee0867", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P25655.json", "taxon_id": "559292", "uniprot_accession": "P25655", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-cnot1-pf25097.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25097", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-cnot1-pf25097.yaml" } ], "pfam_ids": [ "PF04054", "PF12842", "PF16415", "PF16417", "PF16418", "PF25097" ], "protein_name": "General negative regulator of transcription subunit 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSQEQQTPETREKSSSTSESGHPISLDSKTPPPNDSKIESIVKAQILFLLSTLREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVMAKRFSDAISGSDSEVFEDFDIEAFLDHFQFSPLERTNLLIGLTTSVKPTLAKKASALLKNTFQSLLNQLSDPTQQQSIDKNDLDLLREGLFTTDYDRIPLIKVPKFDAIIEKKLANSRPLTALFGPMKASKATLKSMKEAILKKYPPGTATETDVAYLINSLVAIHDYGAWDTVLMGKAIVSSFENLNWEAMLSMFDNPKFMITGTPSLVLFFTIFTNAYKLRQTNFTLDFLWVLWRNPLPQLSIISHIILSPTSMFDIREFNVNPVVSVDSLKDYSEELVNYAKIYEKSNLNCIELVQILLRLLSEVVTYETSLFLNFLDEKVSAELLLLGTLQLPLAWNPVQESLAFQWCSDFFSNFKEHKFVFVRIERTNPQFLFAFLRSLWLKDSSSVNQVVEFIIENDFTSHIGNIQPNRFALEIAALAAARKALSFQDWLDKKMLEFEDADGLNVFLVEVLDFLMSRAALQKNESEQKEESVVLSIDTVNVLLTTLMDNVSISEEVSEHIKDVQILCLQVYPRLFSLGHDRDSIVIATNTTNSFSPDVESEVESYFQALYERRISIGKIVLTLQNFKKSENPRDLDLFACLQHSLFDEYRFFPDYPLEALALTAVLFGSLIQFELLSFVPLGVALRYVYQALLMPTDSKMFRFGMQALVQFQEKLPKYINYCNLILGIPSLQLVRPDIYDSIREMIASNENTEVEKDKLDSFSALANPASPKAPEYTFVSIHVPPLNVPNAEGEIEESVCDNILFAINNLSQLNFNEKLKDVKDNLTPAYLPWFSHYIVTQRVSREANFLSLYGKFLEELKSSDLYKIVFRDTLQAILDIMNNNAETLSPSEKTNLKNLGSWLGSITLLRNKPITTLQVSFKDLLLEGIDSGRIDRVLPFVCKVLEKASSSVIFKPPNPWLMGILKLLVELYQFADFRLNLKFEIELLLNNLNVKMDNIEPSEMYRNHLVQKADLEKELPEDVLNAEFPDGTDVITQYIVAASSQITVTDAVAQVFGKPKPAIKNITQLIIQQSVLEIISAVVRRSVGIAAITTKSLLQKDFAAESNPSRLLLAARQMAKTLAGNLAMVTCREPLQMLMINNFRTIALQDVENVHAAVAQAIDELVSQNLFVASSVIESVASETAIAEIDAEIEHMIVERVRHRKTTPNLPFVDPAGAANLHLNLPSVLKLSSELTPQQFQLYENFDRLSLSTIMSNNSFTSLNGLRTDSADSTDALNSNLNNTVENEANQTALNYARNLLIIIGQLFQLAAQMPYTSMQEVPADHELHELVNQFLTGVASINHPIADHVFLLCAQECCRILLTDSKSPFILEVFSAILEYICQASTKTAINVSLYWNFSNDLEKLNLPIILSLIRFGILTSGEVDYHVARGVRSEQGSGPVTDFAIELLRTAVGGENPMALPGNFVNSITSLYEISESFSGETKQAYEQLVETMNKSVSPASEILSDLDNKQQLNDQIIIVFVSWVHLLRNSATNDETKAAFVYQLHKQGILSEPELCIQFFRCNLEAVLVAFLEAASVNAPDYFNVDAYASLLVNVVKYTEGSTEGTVSSKSVLFRKIIALIIGVFAELHNSMAEFVHQKTFFRLFSSILSELDDAKDVLESCFVDIYSVILECFLAIQPRSFPAFTFAWLSLISHSYLLPKVLLVNNDKINDLFSEILMSFLKFLDLKDDIDKAQFKLLYNGFLRIILVLLHDFPGFLATHCYQLIPYIPLECVQLRNMVLSAFPSDLHLPDPFAQGLKVGRLPEVTRAPLISNSVSASLEKFASALDLEACFSSSKPAEVAKLLLEVYSSQDTPTKLNEWANYFMLCLIRHATRDSPAKQAPQFQSKSPECVIISTMNRSCDSKCRYFLLTAIANQLRYPSSHTYYASCCFLYLFKSSSNNPQELLIKEQMTTVLLERIICNRPHPWGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFDSLHEHVMAPSSANNVSTEEATELMGQV", "sequence_length": 2100, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "47b18f79d9efb927f6e56099cbc11a0e7dc46231c7791f984b089b63b9534776", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P87112.json", "taxon_id": "284812", "uniprot_accession": "P87112", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-cnot1-pf25097.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25097", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-cnot1-pf25097.yaml" } ], "pfam_ids": [ "PF04054", "PF12842", "PF16415", "PF16417", "PF16418", "PF25097" ], "protein_name": "CCR4-NOT transcription complex subunit let-711", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHSTSGLAPVFRVEENHMIRNRENLERPISKKGTITLLSKMPMGFVLNSCSCAYIDNLLAHSSIHRVKPHSFMIQRLVVICGRSSPSLPNHAANIILSAFNFCQIEAPAKKFLEEDAALSLFHTILSYSTVTQINRSGIEILGAQRLTSALCDLIYAYTKTMDDMVASKTLTHLCKKLAGLFDPLVVLPFISKLAKSRRLRHYLQPLFLGHCEYTSDTWGVSPEGAEIYNQIARGNFTTQTLIEIVQTFLEKEVKEVIISSTTDPIKLVQYLISCSNPDNTEIVQALAFLLYSNTKLLPAGSGGTIDMDVQAADTITTARLGDTKFTQPVKDALLDSGREALLRRMEIYGVSLLSSVENFVTELKQAPIQKKMVTNNSVANAILYMLQYNFDMSRDIENGRQDNSPFWGGSNFVIGITRFVEEQQAAVRDMEGFSDWYPDINWVEVIKEFDSEEFAICRQTIIMFADIFPIMFQPQNFPVSFFLTPWRYYDHQLRLFEFMIEYADVWNISQYPHTKVLTPDLNLKTIPDDSTSVVQLWNCQEFSNCLLTIANSQPSLYNAIKQFYNVGSMQAGDVSMLALILSPTQWTTGRQDLIRHFLPSFILKSPNVTPVLNLVWNDTSLSKHMRQHVIYCLTSMHAADSSQLAKILDVAHDIKPTGLSELLNQAPKHLAFMVDLACLASKRDYLNLEKWIEDKEKAHGEAMTVAVLQFIQKKYQHAQLVAAIAPKTQATTPGAPSEPLQVLIPFVSKRARKPLRQQFPLVFQVMKENSGRSSSVSSGGHVQQSSGSQPQQQQFGGGSGLPPSGVVPVQQQPQQPPSLQQQHSQQSLPTPPTTSQQQIHVQQSVPGPIQRPAQFAPQPMFPPQAQAQHQHQHMMGQPPPSSQNAQPGMNLLMNMSPFASGNNRDLLKVVQPAPPPPSSMSPSTQMMRSLIPPLTQRQNSNSGWHAAPAPQRPSGPPTPQQQMDFRGQIQEFAPQGPHQLQRSGSVTGRSMGIVGQKTSSNFSVGAPIPGSAAATAAAAANVQQPMNEDFQSMTFAEDIQEEANSYFEKIYSVNNAMSVENLIDLLKRFRVSNDRRERLVLACVVKNLFEEYRFFHEYPERELRTTAAVYGGIIREDIISNVQFATAVRKVIESLSADPNTMLWTFGIVALQHCRSKLCAYPKVCQMIVSSENFARFPQLLKDYVIAGVKGELPPEGGRHTPVGSAQAGSASSTPTPAAAPTNWGAVARAASVDPKNSLPANRTGNVLSYTNVDTLVMATNKDGAEIAQPAEAIVDKISFLFNNLSQSNLIQKKDEVVEMISDHGDAFTLWLAQYIVMKRVSIEQNFQPLYNQFVNAIENPYLDQCIKRETFRNIRILLRTDKRTTVASNYSDRQLLKNLGSWLGAITIARNKPILLNDLDLKSLLLEAYYKGQAELLYVVPFISKILTACSKTSLFTPTCAWIRSILKVLAELHNEPDLKINLKFEIEVLCKELNVDLNQLQMDGILKDTEKLVRVPQQLCDVKLLTRPEAASPVQSKIHMSGSAEQLSGMSPAIPDQVKPATPQPTEAELQSGTGGGGSQGAEAQVVPNVTHFAYHDINVLTYDGLIPHVKIVSHLPLFQLHPHAKHLVRPAMIHAIKELIGPVTERALKIAMTVTESLVRKDFALDPEEQNLRAASFHMMRAMTAGMAMITCRDPLASSMHSNLANAFSSSLRSTAANPEMKQMIEDAAATITQDNVELSTNFIVKTACEKATQDIEKRLEADYQKRIAAKAEMSFYRDEIAAAIHAQLPKAIATVPGPTDKALMGIYDQFSSRICGFKANSGEDPVSAEPGSGAITPVQTQSKEMELVCQQLQVIIKEVDQTTQAQPHLSNSAFQTVCLMRELMQNVISTKDANHLMILVTRSTEHLLHAYRLEGTPPKNLLDVEWARRLRDLFIGLMRLLQNYFPLVELSRRITTAIMQIRSDYKWNMEGIEILFKQNLLQSVLWDQHLAGSMDNGGNMEAVLFAQKFVRSIGGGDMSRIQFLKERFPLTCEQLTKLHQLQSATRTEGMNNAMNNGAGNAAHHHAGLQQQPPVALPMEAAPMPQASADAMAQRGYDDQEMTAKVEIIMREWIGLCYSPTGQRSPQESLAQMIQLMHEHGVLATDDKITQFFRLCVENCVDISVRVMKSEQLANGLPTTLIRHRCYYTLDAFVKLMALMIRHSDNGQSQNKINLLKKLLNIIVGVLHMDHEVRKQDFNAMPYHRILISLFNEITGPDPLKLLEPIAWSILEAFGQTFFALQPRRMPGFAFAWLDIVGHRNVIGRLLANTGIAETVDAVKTAATYTQLIISHLKFLAPFLRNIQLPKSIAILYKGTLRVLLVILHDFPELLCEFHYVICDTIPPNCVQLRNLILSAYPRQMRLPDPFALNFKQVDTIPEMAVEPKSNLNMATIIPDNIRIPLDEYLANRISVDFLPNLPTLLQTQNQAGTKYNTTVMNALVLYVGIRAIEHLHLRRQRISTLNIAHTSYMDIFQNLAIQLDTEGRYLLFNGIANQLRYPNAHTHYFSCVFLYLFKNSTNDTIQEQITRILFERLVALRPHPWGLLITFIELIKNPTYNFWRYEFTSCAPEIQRLFQNVANTCVPAQGSQPQAQPDGAPGPLGNNTGAANQQQNPNTN", "sequence_length": 2641, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5daf3d83b6b226c42d278f568b4672736bfacb437cca7729e5dd9d9390912172", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q20937.json", "taxon_id": "6239", "uniprot_accession": "Q20937", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3819-pf12842.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3819-pf12842.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/cnot1-1st-pf22940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/cnot1-1st-pf22940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/cnot1-caf1-bind-pf16415.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16415", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/cnot1-caf1-bind-pf16415.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/cnot1-heat-pf16418.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16418", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/cnot1-heat-pf16418.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/cnot1-ttp-bind-pf16417.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16417", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/cnot1-ttp-bind-pf16417.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/not1-connector-pf23590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/not1-connector-pf23590.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/not1-pf04054.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04054", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/not1-pf04054.yaml" } ], "pfam_ids": [ "PF04054", "PF12842", "PF16415", "PF16417", "PF16418", "PF22940", "PF23590" ], "protein_name": "CCR4-NOT transcription complex subunit 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLKLSKVQEVIFGLALLNSSSPDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMARTHSGLTDGIPLQSISAPGSGIWSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLNFKEVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEVFCFADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPAETLATMLACLQACAGSVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASLSIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPGGLGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLVATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKKDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELEQHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS", "sequence_length": 2375, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fdea2b650b05045140fa0307a0c15f912dcc88d51a82e6c4bedfe00e0e368c01", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZQ08.json", "taxon_id": "10090", "uniprot_accession": "Q6ZQ08", "uniprot_release": "2026_03" } ], "pfam_id": "PF12842", "short_name": "DUF3819", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/qsregvf-b-pf12843.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12843", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/qsregvf-b-pf12843.yaml" } ], "pfam_ids": [ "PF12843" ], "protein_name": "Uncharacterized protein YpeB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKEQLIEIANTIMPFGKYKGRRLIDLPEEYLLWFARKDEFPAGKLGELMQITLLIKTEGLTQLVQPLKRPL", "sequence_length": 72, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "93246248aaa8cefafeb0c3b7f32babc4c9e102e530084a08b637d41819dbca08", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AD40.json", "taxon_id": "83333", "uniprot_accession": "P0AD40", "uniprot_release": "2026_03" } ], "pfam_id": "PF12843", "short_name": "QSregVF_b", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12863", "short_name": "DUF3821", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12864", "short_name": "DUF3822", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12866", "short_name": "DUF3823", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12868", "short_name": "DUF3824", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aquifex aeolicus (strain VF5)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4878-pf12870.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12870", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4878-pf12870.yaml" } ], "pfam_ids": [ "PF12870" ], "protein_name": "Uncharacterized protein aq_142", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNKVLIVLAVIAGALILKSCGEPYSGAKETVGEFMEEIAEGEGRDAIKYLYPAYRDELAKNFKLPVQFTEMKPSEVLACVLSTMGRNIDEVEIKKAIAVNPNTANVVVKVEDKEGIEKFFSFTVVKEGDKWYIAKIEKYIPQVGR", "sequence_length": 146, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5c4c8e810ebaaed4e6f66cdb6a971d5df20826c42f51fc292a2318debe332ea3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O66537.json", "taxon_id": "224324", "uniprot_accession": "O66537", "uniprot_release": "2026_03" } ], "pfam_id": "PF12870", "short_name": "DUF4878", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12873", "short_name": "DUF3825", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12875", "short_name": "DUF3826", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/upf0606-protein-kiaa1549-alpha-beta-domain-2-ipr024606.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024606", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/upf0606-protein-kiaa1549-alpha-beta-domain-2-ipr024606.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kiaa1549-pf12877.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12877", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kiaa1549-pf12877.yaml" } ], "pfam_ids": [ "PF12877", "PF29951", "PF29952" ], "protein_name": "UPF0606 protein KIAA1549", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEREPRARVALVPERCGRGPSSRHRRPGLLLPGLWLLLLAGPASCAPDDLSLAQHSHPVRPSDFLPERSILHSAAQVTLSETVPRSQPSISALVLSSPSATAFDTAFLSQRQQTQSTAEPSFFEANYGSVTSNEVALDDEEMDNFLPDAHWTSSRGVSPMRYITPSPPEPPQEMLEPGTTPSLPTISLPDEVLSGCQNTVQQATVYVEPSTYFGTSWSAFLTSEGIIPTPSRNSVLHPIEIHSQLSSKALPETVASVTEGAENLLFSSRISVSQPSGNGMTQQPSVPLWEVSQPLVGVLATSSDRYPNETTAWIEHPEEAIALRAHPGITTSPTDPTFSSQPSALFSTPLSSVSFATQLPGVSEDSFLSSEARGALESWHSSPVPSFTDHPYVLSPESSLRPHTGCVSCVVSSFQQELARSLTEKDMGSGDRLETLSTASVEASHVSPLSSVGTDLSELEEPQEFNTLFPSRPVFSFSSRPVGLWKASMDVSPEVDVSGIAITQVYPSHGRLSTPSSLDSTFGFSVTSDLVMSSSMIHLLSSVIPSTHFDSSFSLTANQNSPSFPAGKPSLLTSPSLVPSAQSSAFSHGAPTSSLELQSGSRLDFTSGFYSTPPLDFSTPAPSRSDELAFPSLMSSDPSTFFSQTFSTMAETFSLSNSMNLQSPQLSVLNPTSLEPSQPQSSADLLLNTVTVLPSPPERPPLSSSPSDSLEFTEVSRVSLRESHVHLTSAFSETTSAFEFSPIPHESTISTLVPSSSEPSLGIYAAGTHLTSLPTTVFHLTPILTESSPFSTLTPSDGSVRVTDHHTPVLPTPSSVIPSSTESISDPYLSASSSLVSEVSPSPPPTKPVMGSSLTSTDFPPSTSPELSTSLELSMPSASTAPGDTVDSALNSEPMSQNPQGNSVPPPQPSLGPATTSTLEATVGTPALATAKPPYVCDITVPDVYLITTVLARRAVQEYIITSIKEVLRIHFNRAVELKVYELFTDFTFLVTSGPFVYTAISVINVLINSKLVRGQTPLILSVKPSFLVPDPRFQVQTVLQFVPPSVDTGFCNFTQSIEKGLVTALFEVRKHQGTYNLTVQIVNVTIASSRVAPRRGPVNIIFAVKGSQGFLNGSEVSDLLRNLTVVEFSFYLGYPVLQIAEPFQYPQLNLSQLLKSSWVRTVLLGVVEKQLHNEVFPAEMERKLAQLLSEVPTRRRVWRRATVAAGNSVVQVVNVSRLEGDDNPVQLIYFVENQDGERLSAVKSSDLINKVDLQRAAIILGYRIQGVIAQPVDRVKRPSPESQSNNLWVVVGVVIPVLVVTVIVVILYWKLCRTDKLDFQPDTVANIQQRQKLQIPSVKGFDFAKQHLGQHNKDDILIIHEPAPLPGPVKDHTTPSENGDVPSPKSKLPSKNIRLRGRVSPSDADSTVSEESSERDAGEKAPAAAPENKALRAPQSGAPLPSSGNEQHSSASIFEHVDRVSRTSEASRRVPSKIQLIAMQPIPAPPAQHPVLADRVAETNKINKEIQSALRHKSEIEHHRNKIRLRAKRRGHYEFPVVDDLSSGDTKERHRVYRRAQMQIDKILDPAASVPSVFIEPRKSSRMKRSPKPRRKHQVNGCPADAEKDRLITTDSDGTYKRPPGVHNSAYIGCPSDPDLPADVQTPSSTELGRYPGLPFSASQYIPPQPSIEEARQTMHSLLDDAFALVAPSSQPTNAMGAGTGVPASLPVNSTPSREERRATQWGSFYSPAQTANNPCSRYEDYGMTPPSGPLPSRPSFGPGLLPSSELVPPEPPQPQSSTDAPYAARGIYSEEMPSVARPRPVGGTTGSQIQHLTQVGIASRIGAQPVEIPAGRGSQYGGPGWPVYGEEEAGRREATHMLGHQEYSSSPLFQVPRTSGREPSAPPGNLAHRGLQGPGLGYPTSSTEDLQPGHSSASLIKAIREELLRLSQKQGSVQNFHS", "sequence_length": 1940, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "716bdf64f6bf0a82ffa6ce9d26b1ad7cff3315ba71943a370af9f0dc67c8c061", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q68FD9.json", "taxon_id": "10090", "uniprot_accession": "Q68FD9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/upf0606-protein-kiaa1549-alpha-beta-domain-2-ipr024606.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024606", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/upf0606-protein-kiaa1549-alpha-beta-domain-2-ipr024606.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kiaa1549-pf12877.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12877", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kiaa1549-pf12877.yaml" } ], "pfam_ids": [ "PF12877", "PF29951", "PF29952" ], "protein_name": "UPF0606 protein KIAA1549L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDHTASQNAQDLIGIPHLGVSGSSTKWHSELSPTEGPHSAGSSTPGFLSPMAELSHPSPPPPALGSLLQLPDGSPSWSMLEVASGPASTQQIKAGVPGRVHNGVSLPTFKNTETATHEAEPPLFQTAESGAIEMTSRKLASATANDSANPLHLSAAPENSRGPALSAEHTSSLVPSLHITTLGQEQAILSGAVPASPSTGTADFPSILTFLQPTENHASPSPVPEMPTLPAEGSDGSPPATRDLLLSSKVPNLLSTSWTFPRWKKDSVTAILGKNEEANVTIPLQAFPRKEVLSLHTVNGFVSDFSTGSVSSPIITAPRTNPLPSGPPLPSILSIQATQTVFPSLGFSSTKPEAYAAAVDHSGLPASASKQVRASPSSMDVYDSLTIGDMKKPATTDVFWSSLSAETGSLSTESIISGLQQQTNYDLNGHTISTTSWETHLAPTAPPNGLTSAADAIKSQDFKDTAGHSVTAEGFSIQDLVLGTSIEQPVQQSDMTMVGSHIDLWPTSNNNHSRDFQTAEVAYYSPTTRHSVSHPQLQLPNQPAHPLLLTSPGPTSTGSLQEMLSDGTDTGSEISSDINSSPERNASTPFQNILGYHSAAESSISTSVFPRTSSRVLRASQHPKKWTADTVSSKVQPTAAAAVTLFLRKSSPPALSAALVAKGTSSSPLAVASGPAKSSSMTTLAKNVTNKAASGPKRTPGAVHTAFPFTPTYMYARTGHTTSTHTAMQGNMDTASGLLSTTYLPRKPQAMHTGLPNPTNLEMPRASTPRPLTVTAALTSITASVKATRLPPLRAENTDAVLPAASAAVVTTGKMASNLECQMSSKLLVKTVLFLTQRRVQISESLKFSIAKGLTQALRKAFHQNDVSAHVDILEYSHNVTVGYYATKGKLVYLPAVVIEMLGVYGVSNVTADLKQHTPHLQSVAVLASPWNPQPAGYFQLKTVLQFVSQADNIQSCKFAQTMEQRLQKAFQDAERKVLNTKSNLTIQIVSTSNASQAVTLVYVVGNQSTFLNGTVASSLLSQLSAELVGFYLTYPPLTIAEPLEYPNLDISETTRDYWVITVLQGVDNSLVGLHNQSFARVMEQRLAQLFMMSQQQGRRFKRATTLGSYTVQMVKMQRVPGPKDPAELTYYTLYNGKPLLGTAAAKILSTIDSQRMALTLHHVVLLQADPVVKNPPNNLWIIAAVLAPIAVVTVIIIIITAVLCRKNKNDFKPDTMINLPQRAKPVQGFDYAKQHLGQQGADEEVIPVTQETVVLPLPIRDAPQERDVAQDGSTIKTAKSTETRKSRSPSENGSVISNESGKPSSGRRSPQNVMAQQKVTKEEARKRNVPASDEEEGAVLFDNSSKVAAEPFDTSSGSVQLIAIKPTALPMVPPTSDRSQESSAVLNGEVNKALKQKSDIEHYRNKLRLKAKRKGYYDFPAVETSKGLTERKKMYEKAPKEMEHVLDPDSELCAPFTESKNRQQMKNSVYRSRQSLNSPSPGETEMDLLVTRERPRRGIRNSGYDTEPEIIEETNIDRVPEPRGYSRSRQVKGHSETSTLSSQPSIDEVRQQMHMLLEEAFSLASAGHAGQSRHQEAYGSAQHLPYSEVVTSAPGTMTRPRAGVQWVPTYRPEMYQYSLPRPAYRFSQLPEMVMGSPPPPVPPRTGPVAVASLRRSTSDIGSKTRMAESTGPEPAQLHDSASFTQMSRGPVSVTQLDQSALNYSGNTVPAVFAIPAANRPGFTGYFIPTPPSSYRNQAWMSYAGENELPSQWADSVPLPGYIEAYPRSRYPQSSPSRLPRQYSQPANLHPSLEQAPAPSTAASQQSLAENDPSDAPLTNISTAALVKAIREEVAKLAKKQTDMFEFQV", "sequence_length": 1849, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "02386a72d888d165ddd72b67cd3eeb1f9f10099094797ed1bc101a8c1367261b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZVL6.json", "taxon_id": "9606", "uniprot_accession": "Q6ZVL6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/upf0606-protein-kiaa1549-alpha-beta-domain-2-ipr024606.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024606", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/upf0606-protein-kiaa1549-alpha-beta-domain-2-ipr024606.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kiaa1549-pf12877.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12877", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kiaa1549-pf12877.yaml" } ], "pfam_ids": [ "PF12877", "PF29951", "PF29952" ], "protein_name": "UPF0606 protein KIAA1549", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGARRRRRGAAMEGKPRAGVALAPGPSGRRPSARCARRRRPGLLLPGLWLLLLARPASCAPDELSPEQHNLSLYSMELVLKKSTGHSAAQVALTETAPGSQHSSPLHVTAPPSATTFDTAFFNQGKQTKSTADPSIFVATYVSVTSKEVAVNDDEMDNFLPDTHWTTPRMVSPIQYITVSPPGLPREALEPMLTPSLPMVSLQDEEVTSGWQNTTRQPAAYAESASHFHTFRSAFRTSEGIVPTPGRNLVLYPTDAYSHLSSRTLPEIVASLTEGVETTLFLSSRSLMPQPLGDGITIPLPSLGEVSQPPEEVWATSADRYTDVTTVLSQSLEETISPRTYPTVTASHAALAFSRTHSPLLSTPLAFASSASPTDVSSNPFLPSDSSKTSELHSNSALPGPVDNTHILSPVSSFRPYTWCAACTVPSPQQVLATSLMEKDVGSGDGAETLCMTVLEESSISLMSSVVADFSEFEEDPQVFNTLFPSRPIVPLSSRSMEISETSVGISAEVDMSSVTTTQVPPAHGRLSVPASLDPTAGSLSVAETQVTPSSVTTAFFSVITSILLDSSFSVIANKNTPSLAVRDPSVFTPYSLVPSVESSLFSDQERSSFSEHKPRGALDFASSFFSTPPLELSGSISSPSEAPASLSLMPSDLSPFTSQSFSPLVETFTLFDSSDLQSSQLSLPSSTNLEFSQLQPSSELPLNTIMLLPSRSEVSPWSSFPSDSLEFVEASTVSLTDSEAHFTSAFIETTSYLESSLISHESAVTALVPPGSESFDILTAGIQATSPLTTVHTTPILTESSLFSTLTPPDDQISALDGHVSVLASFSKAIPTGTVLITDAYLPSGSSFVSEATPFPLPTELTVVGPSLTPTEVPLNTSTEVSTTSTGAATGGPLDSTLMGDAASQSPPESSAAPPLPSLRPVTAFTLEATVDTPTLATAKPPYVCDITVPDAYLITTVLARRAVQEYIITAIKEVLRIHFNRAVELKVYELFTDFTFLVTSGPFVYTAISVINVLINSKLVRDQTPLILSVKPSFLVPESRFQVQTVLQFVPPSVDTGFCNFTQRIEKGLMTALFEVRKHHQGTYNLTVQILNITISSSRVTPRRGPVNIIFAVKSTQGFLNGSEVSELLRNLSVVEFSFYLGYPVLQIAEPFQYPQLNLSQLLKSSWVRTVLLGVMEKQLQNEVFQAEMERKLAQLLSEVSTRRRMWRRATVAAGNSVVQVVNVSRLEGDDNPVQLIYFVEDQDGERLSAVKSSDLINKMDLQRAAIILGYRIQGVIAQPVDRVKRPSPESQSNNLWVIVGVVIPVLVVMVIVVILYWKLCRTDKLDFQPDTVANIQQRQKLQIPSVKGFDFAKQHLGQHNKDDILIIHEPAPLPGPLKDHTTPSENGDVPSPKSKIPSKNVRHRGRVSPSDADSTVSEESSERDAGDKTPGAVNDGRSHRAPQSGPPLPSSGNEQHSSASIFEHVDRISRPPEASRRVPSKIQLIAMQPIPAPPVQRPSPADRVAESNKINKEIQTALRHKSEIEHHRNKIRLRAKRRGHYEFPVVDDLSSGDTKERHRVYRRAQMQIDKILDPTASVPSVFIEPRKSSRIKRSPKPRRKHQVNGCPADAEKDRLITTDSDGTYRRPPGVHNSAYIGCPSDPDLPADVQTPSSVELGRYPALPFPASQYIPPQPSIEEARQTMHSLLDDAFALVAPSSQPASTAGVGPGVPPGLPANSTPSQEERRATQWGSFYSPAQTANNPCSRYEDYGMTPPTGPLPRPGFGPGLLQSTELVPPDPQQPQASAEAPFAARGIYSEEMPSVARPRPVGGTTGSQIQHLTQVGIASRIGAQPVEIPPSRGSQYGGPGWPSYGEDEAGRREATHMLGHQEYSSSPLFQVPRTSGREPSAPSGNLPHRGLQGPGLGYPTSSTEDLQPGHSSASLIKAIREELLRLSQKQSTVQNFHS", "sequence_length": 1950, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "19def6c6afe84a9f33b635f938f3bebabcaffee10c885ef45a4a022b099b3d53", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HCM3.json", "taxon_id": "9606", "uniprot_accession": "Q9HCM3", "uniprot_release": "2026_03" } ], "pfam_id": "PF12877", "short_name": "KIAA1549", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/lipoprotein-nf007824.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007824", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/lipoprotein-nf007824.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3828-ipr024289.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024289", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3828-ipr024289.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3828-pf12883.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3828-pf12883.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P75818", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12883" ], "protein_name": "Uncharacterized lipoprotein YbjP", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c3012802da1d13cc64f615b534fb6255c1f078b3152d8ca81d55c0dd643faf76", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRYSKLTMLIPCALLLSACTTVTPAYKDNGTRSGPCVEGGPDNVAQQFYDYRILHRSNDITALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPDSAHVASASTIPNRDARNIPLRVDLKQGDQGWQDEVLMIQEGQCWVIDDVRYLGGSVHATAGTLRQSIENR", "sequence_length": 171, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c3012802da1d13cc64f615b534fb6255c1f078b3152d8ca81d55c0dd643faf76", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75818.json", "taxon_id": "83333", "uniprot_accession": "P75818", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3828-ipr024289.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024289", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3828-ipr024289.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3828-pf12883.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12883", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3828-pf12883.yaml" } ], "pfam_ids": [ "PF12883" ], "protein_name": "Uncharacterized protein YqhG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIILLFLAALASFTVHAQPPSQTVEQTVRHIYQNYKSDATAPYFGETGERAITSARIQQALTLNDNLTLPGNIGWLDYDPVCDCQDFGDLVLESVAITQTDADHADAVVRFRIFKDDKEKTTQTLKMVAENGRWVIDDIVSNHGSVLQAVNSENEKTLAALASLQKEQPEAFVAELFEHIADYSWPWTWVVSDSYRQAVNAFYKTTFKTANNPDEDMQIERQFIYDNPICFGEESLFSRVDEIRVLEKTADSARIHVRFTLTNGNNEEQELVLQRREGKWEIADFIRPNSGSLLKQIEAKTAARLKQ", "sequence_length": 308, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "41352645f0a91c6d0955f1870b4a044ee69ed8f5fa14eafc7d2b92669ea903ce", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q46858.json", "taxon_id": "83333", "uniprot_accession": "Q46858", "uniprot_release": "2026_03" } ], "pfam_id": "PF12883", "short_name": "DUF3828", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3829-pf12889.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12889", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3829-pf12889.yaml" } ], "pfam_ids": [ "PF12889" ], "protein_name": "Uncharacterized protein YiiG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRNLLSSAIIVAIMSLGLTGCDDKKAETETLPPANSQPAAPAPEAKPTEAPVAKAEAKPETPAQPVVDEQAVFDEKMDVYIKCYNKLQIPVQRSLARYADWLKDFKQGPTGEERTVYGIYGISESNLAECEKGVKSAVALTPALQPIDGVAVSYIDAAVALGNTINEMDKYYTQENYKDDAFAKGKTLHQTFLKNLEAFEPVAESYHAAIQEINDKRQLAELKNIEEREGKTFHYYSLAVMISAKQINNLISQDKFDAEAAMKKVSELETLVAQAKEADKGGMNFSFINSAGQYQLEAKKYVRRIRDKVPYSDWDKEQLQDANSSWMVEDSFPRALREYNEMVDDYNSLR", "sequence_length": 351, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "34ad6d67deb18780556a704428c43ecd2ce9f28b22c426f5dd66d89b7a1b1bab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32151.json", "taxon_id": "83333", "uniprot_accession": "P32151", "uniprot_release": "2026_03" } ], "pfam_id": "PF12889", "short_name": "DUF3829", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12903", "short_name": "DUF3830", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12915", "short_name": "DUF3833", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12916", "short_name": "DUF3834", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3835-pf12927.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12927", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3835-pf12927.yaml" } ], "pfam_ids": [ "PF12927" ], "protein_name": "Uncharacterized protein C736.07c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNDERLVAINFEQQIFSKISEISESVGRAIRYCKEDGKVEGCETASHVDFLNHIHLLLGNYNNDLASSIEKKKSELIVRNSEGLPVMDIHEEVDKDGNIISASVAPQRISSVIDYADVFRSLPGFKNIENGGNRDTSSRIEELSEEEINDSTKNINYKAPEMGSLPSNTEFTSTPTLGVSEFPSKHGDHSDSKTYESPISNSQAASLSDSDMVQQIKNGSKTSLFKKGFLFKKNNAMQNRTTSNIKSNASAIEKNKETILNALNNSTLNENGHQDTQNEVLRDIVLEHPTAKAQDTGESNKDNNTSTSKHKKRPKRLSKFKQAKLETKKSGNKDHATSSEKLSLGNESIHSINETRSSSIEEPDNADNKIVEEEPMLLPVPTTAQGQNVLEAVQYDGLDSLEDMEALIQEMEEEGELDDNSESEEDEHGMTIGFSKELKAPPDPQYFTEKTGATTYVNGNDESLNVSDFPQIVEQEELSSKNPRKVHFSDTLEIKHVSRSGKANIEVIPAPTEEYDNLFGPDDFQSRISAFRKARSKLRAKENEEGNHSNATCTIKNDDLSNTLNNRAANTKLNPKEEDKSTVESELKAPPKEKSSETSKEYLNEPSVVKDFVVERTPSDKISESKEAFDAKVEEISDQRAISQRYYELRKKMIDNTGEYIKDEEEQAVIPLDENGNEKPKMSRFMTARLRGRVPIYEH", "sequence_length": 699, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c5053f217edff7ac4ef907e24b7d492a90576f71e2965f4626898231e13f9b88", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O74953.json", "taxon_id": "284812", "uniprot_accession": "O74953", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/prefoldin-complex-go0016272.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016272", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/prefoldin-complex-go0016272.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/5s-class-rrna-transcription-by-rna-polymerase-iii-go0042791.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042791", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/5s-class-rrna-transcription-by-rna-polymerase-iii-go0042791.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/formation-of-translation-preinitiation-complex-go0001731.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0001731", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/formation-of-translation-preinitiation-complex-go0001731.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/rna-polymerase-i-assembly-go1990113.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990113", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/rna-polymerase-i-assembly-go1990113.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/rna-polymerase-ii-core-complex-assembly-go1990114.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990114", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/rna-polymerase-ii-core-complex-assembly-go1990114.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/rna-polymerase-iii-assembly-go1990115.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990115", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/rna-polymerase-iii-assembly-go1990115.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3835-ipr024325.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024325", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3835-ipr024325.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3835-pf12927.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12927", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3835-pf12927.yaml" } ], "pfam_ids": [ "PF02996", "PF12927" ], "protein_name": "Bud site selection protein 27", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLLAASVESTLKNLQDKRNFLSEQREHYIDIRSRLVRFINDNDDGEEEGEGQGMVFGDIIISTSKIYLSLGYEYYVEKTKEEAITFVDDKLKLMEDAIEQFNLKIEEAKKTLDNLNHMEDGNGIEEDEANNDEDFLPSMEIREELDDEGNVISSSVTPTTKQPSQSNSKKEQTPAVGPKEKGLAKEKKSKSFEENLKGKLLKRNDEVKKKVQPSKVDTENVYTFADLVQQMDQQDELEDGYIETDEINYDYDAFENSNFKVNDNYEEDDEDEDEEEYLNHSIIPGFEAQSSFLQQIQRLRAQKQSQDHEREEGDVNKSLKPILKKSSFAENSDKKQKKKQVGFASSLEIHEVENLKEENKRQMQSFAVPMYETQESTGIANKMTSDEFDGDLFAKMLGVQEADEVHEKYKEELINQERLEGEASRSNRRTRVSRFRKDRASKKENTLSTFKQETTRSVENEVVEKEPVVGDIIEKEPVVGDVIEKEPVVGDVIEKEPAVTDIVEREPAVNDIVERKPVVGDIIEKEPTINDIVEKEPEINSKSEFETPFKKKKLKSLQKPRSSKSMKKKFDPKILENISDDDYDDDDDGNKKLLSNKSKNNTDEQDKFPSKIQEVSRSMAKTGATVGSEPVRITNVDYHALGGNLDDMVKAYSLGLYDDDLEEDPGTIVEKLEDFKEYNKQVELLRDEIRDFQLENKPVTMEEEENDGNVMNDIIEHEFPESYTNDEDEVALHPGRLQEEVAIEYRRLKEATASKWQSSSPAAHTEGELEPIDKFGNPVKTSRFRSQRLHMDSKP", "sequence_length": 796, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "301f2e7ea007ff68ffd1169a4c2d96a1f2e8f045aedffc7ec313db1cc641fb98", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P43573.json", "taxon_id": "559292", "uniprot_accession": "P43573", "uniprot_release": "2026_03" } ], "pfam_id": "PF12927", "short_name": "DUF3835", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12930", "short_name": "DUF3836", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12939", "short_name": "DUF3837", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 15, "discovery_scanned": true, "example_count": 15, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis C virus genotype 7a (isolate QC69)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-core-pf01542.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-core-pf01542.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-env-pf01539.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01539", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-env-pf01539.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns2-pf01538.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01538", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns2-pf01538.yaml" } ], "pfam_ids": [ "PF00998", "PF01001", "PF01006", "PF01506", "PF01538", "PF01539", "PF01542", "PF01543", "PF01560", "PF02907", "PF07652", "PF08300", "PF08301", "PF12941", "PF22027" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTNPKPQRLTKRNTVRRPQNVKFPGGGQIVGGVYLLPRRGPRLGVRGTRKSSERSQPRGRRQRIPKAASSQGKAWGKPGYPWPLYGNEGCGWAGWLLSPRGSRPTWGPTDPRHRSRNLGKVIDTMTCGFADLMGYIPVLGAPLGGVARALAHGVRVLEDGVNYATGNLPGCSFSIFLLALLSCLTVPASAYEVRNSSGVYHLTNDCPNASIVYETDNAILHEPGCVPCVREGNTSRCWEPVAPTLAVRYRGALTDDLRTHIDLVVASATLCSALYVGDICGAIFIASQAVLWKPGGGRIVQDCNCSIYPGHVTGHRMAWDMMQNWAPALSMVAAYAVRVPGVIITTVAGGHWGVLFGLAYFGMAGNWAKVILIMLLMSGVDAETMAVGARAAHTTGALVSLLNPGPSQRLQLINTNGSWHINRTALNCNDSLQTGFIAALFYTHRFNSSGCPERMASCKPLSDFDQGWGPLWYNSTERPSDQRPYCWHYAPSPCGIVPAKDVCGPVYCFTPSPVVVGTTDRRGVPTYTWGENESDVFLLNSTRPPQGSWFGCSWMNTTGFTKTCGGPPCKIRPQGAQSNTSLTCPTDCFRKHPRATYSACGSGPWLTPRCMVHYPYRLWHYPCTVNFTIHKVRLYIGGVEHRLDAACNWTRGERCDLEDRDRVDMSPLLHSTTELAILPCSFVPLPALSTGLIHLHQNIVDAQYLYGLSPAIISWAIRWEWVVLVFLLLADARICACLWMMMLMAQAEAALENLIHLNAASLAGTHGIWWLLLVFCASWHLRGRVVPLVTYGICGMWPFFLMLLSLPPRAYALDREVSAALGTGMLAIILLVTLGPHYKRLLALILWWVTYFLTRCEAALQTWVPPLNPRGGRDGFILCVLLCYPGLVFDITKWLLVMMCPLYLLQLCLVRTPYFVRAQALIRVCSLFKTLAGGRYVQAALLTIGRWTGTYIYNHLAPLETWAAGGLRDLAVAVEPVIFSPMEKKIIVWGAETTACGDILCGLPVSARLGREVLLGPADDYRSMGWQLLAPISAYAQQTRGLISTLVVSLTGRDKNETAGEVQVLSTSTQTFLGTNVGGVMWGPYHGAGTRTVAGRGGPVLQMYTSVSDDLVGWPAPPGSKSLEPCSCGSADLYLVTRNADVLPLRRKGDGTASLLSPRPVSSLKGSSGGPVLCPQSHCVGIFRAAVCTRGVAKAVQFVPIEKMQVAQRSPSFSDNSTPPAVPSTYQVGYLHAPTGSGKSTKVPAAYASQGYKVLVLNPSVAATLGFGAYMSKAYGIDPSVRTGARTVTTGAPITYSTYGKFLADGGCSGGAYDIIICDECHAIDATTVVGIGTVLDQAETSGVRLVVLATATPPGSVTVPHPNIEEVALGNDGEIPFYGKAIPLQHIKGGRHLIFCHSKKKCDELAGKLTSLGLTAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNVAVTQTVDFSLDPTFTIETTTVPQDSVSRSQRRGRTGRGRLGIYRYVSSGERPSGMFDTSVLCECYDLGCSWYELTPSETTTRLRAYLNCPGLPVCQDHLEFWEGVFTGLTHIDAHFLSQTKQEGQNYAYLTAYQATVCARAKAPPPSWDVQWKCLQRLKPLLVGPTPLLYRLGSVTNEVTFTHPITKYIATCMAADLEVTTSTWVIVGGVLAAVAAYCMSTGSVVVVGRVVLGSNVVTAPDREVLYQHFDEMEECSKAPELLKHAQTIGGMFKDKALAVLDTLKPAAQAAVPIVETNFQKVEKLWNQHMWNFISGIQYLAGLSTLPGNPTVASLMAFTASVTSPLATSTTLLVNILGGWFASQLAPPSAATTFVVSGLAGAAVGSVGLGKVLVDVLAGYGAGIAGALVAFKIMSGEVPSTEDLANLLPAILSPGALVVGVVCAAIIKRHTGTSEGVTQWMNRLIAFASRGNHVSPTHYIQDDDASKRVMGILSSLTITSLIKRVLAWAQTDYSAPCAGSWLREVWDWVCMVLSDFASWLKAKVLPSLPGIPFLSCQKGYKGEWRNDGIMNTKCPCGALIAGHVKNGSMRIVGPKTCRNTWWGTFPINSHTTGPSSPVPSHCYQRALWRVSATEYVEILRHNDQHYVVGVTAEDLKCPCQVPSPEFFSFVDGVRIHRFAPEPKPMIREEAAFVVGLHSYVVGSQLPCEPEPDVQTVSQLLTDPSHITAETAARRLRRGSPPSNASSSASQLSAPSLKATHTTLPQHPDAELIEANLMWEHKVGAIRRMETDTKVIILDSFDSASSVEDDMEPSTAAECLRTRKVFPPAMPIWARPDYNPPVVENWKDPEYAPPQVSGCALPPAQTPPVPPPRRKRAVIQLTESAVSTALAELAERSFPKEEAPPSDSAISLDSPAANDPPSDCDQGSEISFSSMPPLEGEPGDPDLSDGSWSTVSTRSDVICCSMSYSWTGALVTPSGPEEERLPINALSNTMLRHYNMVYSTTSRSASQRAKKVTFDRLQVLDDHYKRALADVKADASTVKAQLLSVEEAAALTPAHSARSKFGYGAKEVRSLAPKAMSHIKEVWKDLLQDMTTPIPTTIMAKNEVFCVNPAKGGKKPARLIVYPDLGVRVCEKRALYDIAQKLPKAIMGQAYGFQYSPSQRVEYLVKTWKSKRTPMGFSYDTRCFDSTVTEQDIRTESEIYQCCNLDPEARTIINALTERLYVGGPMFNSKGQRVGYRRCRASGVFPTSMGNTMTCYIKAKAAAAAAGLESTDFLVCGDDLVVICESKGVERDRADLQAFAAAMTRYSAPPGDMPQPAYDLEHIDSCSSNVSVARDNSGKRVYYLTRDPTNPLSRAAWETARHSPVNSWVGNIIMFAPTIWVRMVLMTHFFALLLNEERLNDPVSFEMYGATYTVCPTDLPDIIQRLHGLRAFELHTYSPAELTRVAATLRKLGVPPLRTWRQRARKVRAGLIGQGGRARICGLYLFNWAVRTKIKLTPLAGAGRLDLSSWFSVCAGEADVDHSTPRAHPRPLLLCLLLLAVGVGIFLLPAR", "sequence_length": 3013, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2d1e33ceab2d76ce037f85699e3c1e864e543089292bcb0cb57db2004d720463", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8QPD9.json", "taxon_id": "1544902", "uniprot_accession": "A8QPD9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis C virus genotype 6a (isolate EUHK2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-core-pf01542.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-core-pf01542.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-env-pf01539.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01539", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-env-pf01539.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns2-pf01538.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01538", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns2-pf01538.yaml" } ], "pfam_ids": [ "PF00998", "PF01001", "PF01006", "PF01506", "PF01538", "PF01539", "PF01542", "PF01543", "PF01560", "PF02907", "PF07652", "PF08300", "PF08301", "PF12941", "PF22027" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTLPKPQRKTKRNTNRRPMDVKFPGGGQIVGGVYLLPRKGPRLGVRATRKTSERSQPRGRRQPIPKARQPQGRHWAQPGYPWPLYGSEGCGWAGWLLSPRGSRPHWGPNDPRRRSRNLGKVIDTLTCGFADLMWYIPVVGAPLGGVAAALAHGVRAIEDGINYATGNLPGCSFSIFLLALLSCLTTPASALTYGNSSGLYHLTNDCSNSSIVLEADAMILHLPGCLPCVRVGNQSTCWHAVSPTLATPNASTPATGFRRHVDLLAGAAVVCSSLYIGDLCGSLFLAGQLFAFQPRRHWTVQDCNCSIYTGHVTGHKMAWDMMMNWSPTTTLVLSSILRVPEICASVIFGGHWGILLAVAYFGMAGNWLKVLAVLFLFAGVEAQTMIAHGVSQTTSGFASLLTPGAKQNIQLINTNGSWHINRTALNCNDSLQTGFLASLFYTHKFNSSGCPERMAACKPLAEFRQGWGQITHKNVSGPSDDRPYCWHYAPRPCEVVPARSVCGPVYCFTPSPVVVGTTDKRGNPTYTWGENETDVFMLESLRPPTGGWFGCTWMNSTGFTKTCGAPPCQIVPGNYNSSANELLCPTDCFRKHPEATYQRCGSGPWVTPRCLVDYAYRLWHYPCTVNFTLHKVRMFVGGTEHRFDVACNWTRGERCELHDRNRIEMSPLLFSTTQLSILPCSFSTMPALSTGLIHLHQNIVDVQYLYGVSTNVTSWVVKWEYIVLMFLVLADARICTCLWLMLLISTVEAAVERLVVLNAASAAGTAGWWWAVLFLCCVWYVKGRLVPACTYMALGMWPLLLTILALPPRAYAMDNEQAASLGAVGLLVITIFSITPMYKKLLNCFIWWNQYFLARAEAMVHEWVPDLRVRGGRDSIILLTCLLHPQLGFEVTKILLAVLAPLYILQYSLLKVPYFVRAHILLRACLLVRRLAGGKYVQACLLRLGAWTGTFVYDHLAPLSDWASDGLRDLAVAVEPVIFSPMEKKIITWGADTAACGDILSGLPVSARLGNLVLLGPADDMQRGGWKLLAPITAYAQQTRGLVGTIVTSLTGRDKNEVEGEVQVVSTDTQSFVATSINGVMWTVYHGPGFKTLAGPKGPVCQMYTNVDLDLVGWPSPPGARSLTPCNCGSSDLYLVTREADVIPARRRGDSRAALLSPRPISTLKGSSGGPIMCPSGHVVGLFRAAVCTRGVAKSLDFIPVENMETTMRSPSFTDNSTPPAVPQTYQVGYLHAPTGSGKSTRVPAAYASQGYKVLVLNPSVAATLSFGSYMRQAYGVEPNIRTGVRTVTTGGAITYSTYGEFLADGGCSGGAYDIIICDECHSTDPTTVLGVGTVLDQAETAGVRLTVLPTATPPGSVTVPHPNITETALPTTGEIPFYGKAIPLEYIKGGRHLIFCHSKKKCDELAGKLKSLGLNAVAFYRGVDVSVIPTSGDVVVCATDALMTGYTGDFDSVIDCNVAVTQVVDFSLDPTFSIETTTVPQDAVSRSQRRGRTGRGKPGVYRFVSQGERPSGMFDTVVLCEAYDTGCAWYELTPSETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLTHIDAHFLSHTKQAGENFAYLVAYQATVCARAKAPPPSWDMMWKCLIRLKPTLTGPTPLLYRLGAVQNGVITTHPITKYIMTCMSADLEVITSTWVLVGGVLAALAAYCLSVGCVVICGRITLTGKPAVVPDREILYQQFDEMEECSRHIPYLAEGQQIAEQFRQKVLGLLQASAKQAEELKPAVHSAWPRVEDFWRKHMWNFVSGIQYLAGLSTLPGNPAVASLMSFTASLTSPLRTSQTLLLNILGGWIAAQVAPPPASTAFVVSGLAGAAVGSIRLGRVLVDVLAGYGAGVSGALVAFKIMSGECPSTEDMVNLLPALLSPGVALVGVVCAAILRRHVGPAEGANQWMNRLIAFASRGNHVSPTHYVPETDASKNVTQILTSLTITSLLRRLHQWVNEDTATPCATSWLRDVWDWVCTVLSDFKVWLQAKLFPRLPGIPFLSCQAGYRGVWAGDGVCHTTCTCGAVIAGHVKNGTMKITGPKTCSNTWHGTFPINATTTGPSTPRPAPNYQRALWRVSAEDYVEVRRLGDCHYVVGVTAEGLKCPCQVPAPEFFTEVDGVRIHRYAPPCKPLLRDEVTFSVGLSNYAVGSQLPCEPEPDVTVVTSMLTDPTHITAETAARRLKKGSPPSLASSSANQLSAPSLRATCTTSQKHPEMELLQANLLWKHEMGSHIPRVQSENKVVVLDSFELYPLEYEEREISVSVECHRQPRCKFPPVFPVWARPDNNPPFIQAWQMPGYEPPVVSGCAVAPPKPAPVPPPRRKRLVHLDESTVSHALAQLADKVFVESSNDPGPSSDSGLSITSPVPPDPTTPEDAGSEAESYSSMPPLEGEPGDPDLSSGSWSTVSDEDDVVCCSMSYSWTGALITPCAAEEEKLPINPLSNSLVRHHNMVYSTTSRSASLRQKKVTFDRVQVFDQHYQDVLKEIKLRASTVQAKLLSIEEACDLTPSHSARSKYGYGAQDVRSRASKAVDHIPSVWEGLLEDSDTPIPTTIMAKNEVFCVDPSKGGRKPARLIVYPDLGVRVCEKMALYDVTQKLPQAVMGPAYGFQYSPNQRVEYLLKMWRSKKVPMGFSYDTRCFDSTVTERDIRTENDIYQSCQLDPVARRVVSSLTERLYVGGPMANSKGQSCGYRRCRASGVLPTSMGNTLTCYLKAQAACRAANIKDCDMLVCGDDLVVICESAGVQEDTASLRAFTDAMTRYSAPPGDAPQPTYDLELITSCSSNVSVAHEGNGKKYYYLTRDCTTPLARAAWETARHTPVNSWLGNIIMFAPTIWVRMVLMNHFFSILQSQEQLEKAFDFDIYGVTYSVSPLDLPAIIQRLHGMAAFSLHGYSPVELNRVGACLRKLGVLPSRAWRHRARAVRAKLIAQGGKAAICGKYLFNWAVKTKLKLTPLVSASKLDLSGWFVAGYDGGDIYHSVSQARPRFLLLGLLLLTVGVGIFLLPAR", "sequence_length": 3018, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "812ad6d9360b3554135d6ba1e3b08b4c5c3e4076b2c2543c29da6500e7461ddf", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O39927.json", "taxon_id": "356420", "uniprot_accession": "O39927", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis C virus genotype 5a (isolate EUH1480)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hcv-ns5a-1a-pf08300.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hcv-ns5a-1a-pf08300.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hcv-ns5a-1b-pf08301.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08301", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hcv-ns5a-1b-pf08301.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns5a-pf01506.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01506", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns5a-pf01506.yaml" } ], "pfam_ids": [ "PF00998", "PF01001", "PF01006", "PF01506", "PF01538", "PF01539", "PF01542", "PF01543", "PF01560", "PF02907", "PF08300", "PF08301", "PF12941", "PF22027" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPKLGVRATRKNSERSQPRGRRQPIPKARRPTGRSWGQPGYPWPLYANEGLGWAGWLLSPRSSRPNWGPNDPRRKSPNLGRVIHTLTCGFPHLMGYIPLVGGPVGGVSRALAHGVKVLEDGINYATGNLPGCPFSIFVLALLWCLTVPASAVPYRNASGVYHVTNDCPNSSIVYEADNLILHAPGCVPCVLEDNVSRCWVQITPTLSAPSFGAVTALLRRAVDYLAGGAAFCSALYVGDACGALSLVGQMFTYKPRQHTTVQDCNCSIYSGHITGHRMAWDMMMKWSPTTALLMAQLLRIPQVVIDIIAGGHWGVLLAAAYFASTANWAKVILVLFLFAGVDGRTHTVGGTVGQGLKSLTSFFNPGPQRQLQFVNTNGSWHINSTALNCNDSLQTGFIAGLMYAHKFNSSGCPERMSSCRPLAAFDQGWGTISYATISGPSDDKPYCWHYPPRPCGVVPARDVCGPVYCFTPSPVVVGTTDRRGCPTYNWGSNETDILLLNNIRPPAGNWFGCTWMNSTGFVKNCGAPPCNLGPTGNNSLKCPTDCFRKHPDATYTRCGSGPWLTPRCLVHYPYRLWHYPCTVNYTIFKVRMFIGGLEHRLEAACNWTYGERCDLEDRDRAELSPLLHTTTQWAILPCSFTPTPALSTGLIHLHQNIVDTQYLYGLSSSIVSWAVKWEYIMLVFLLLADARICTCLLILLLICQAEATCKNVIVLNAAAAAGNHGFFWGLLVVCLAWHVKGRLVPGATYLCLGVWPLLLVRLLRPHRALALDSSDGGTVGCLVLIVLTIFTLTPGYKKKVVLVMWWLQYFIARVEAIIHVWVPPLQVKGGRDAVIMLTCLFHPALGFEITKILFGILGPLYLLQHSLTKVPYFLRARALLRLCLLAKHLVYGKYVQAALLHLGRLTGTYIYDHLAPMKDWAASGLRELTVATEPIVFSAMETKVITWGADTAACGNILAVLPVSARRGREIFLGPADDIKTSGWRLLAPITAYAQQTRGVLGAIVLSLTGRDKNEAEGEVQFLSTATQTFLGICINGVMWTLFHGAGSKTLAGPKGPVVQMYTNVDKDLVGWPSPPGKGSLTRCTCGSADLYLVTRHADVIPARRRGDTRASLLSPRPISYLKGSSGGPIMCPSGHVVGVFRAAVCTRGVAKALEFVPVENLETTMRSPVFTDNSTPPAVPHEFQVGHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATFGFGAYMSRAYGVDPNIRTGVRTVTTGAGITYSTYGKFFADGGCSGGAYDVIICDECHSQDATTILGIGTVLDQAETAGARLVVLATAIPPGSVTTPHPNIEEVALPSEGEIPFYGRAIPLVLIKGGRHLIFCHSKKKCDELAKQLTSLGVNAVAYYRGLDVAVIPATGDVVVCSTDALMTGFTGDFDSVIDCNSAVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRHGIYRYVSSGERPSGIFDSVVLCECYDAGCAWYDLTPAETTVRLRAYLNTPGLPVCQEHLEFWEGVFTGLTNIDAHMLSQAKQGGENFPYLVAYQATVCVRAKAPPPSWDTMWKCMICLKPTLTGPTPLLYRLGAVQNEITLTHPITKYIMACMSADLEVITSTWVLVGGVVAALAAYCLTVGSVAIVGRIILSGRPAITPDREVLYQQFDEMEECSASLPYVDEARAIAGQFKEKVLGLIGTAGQKAETLKPAATSMWSKAEQFWAKHMWNFVSGIQYLAGLSTLPGNPAVATLMSFTAAVTSPLTTHQTLLFNILGGWVASQIAPPTAATAFVVSGMAGAAVGNIGLGRVLIDILAGYGTGVAGALVAFKIMCGERPTAEELVNLLPSILCPGALVVGVICAAVLRRHIGPGEGAVQWMNRLIAFASRGNHGSPTHYVPETDASAKVTQLLSSLTVTSLLKRLHTWIGEDYSTPCDGTWLRAIWDWVCTALTDFKAWLQAKLLPQLPGVPFFSCQKGYKGVWRGDGVNSTKCPCGATISGHVKNGTMRIVGPKLCSNTWQGTFPINATTTGPSVPAPAPNYKFALWRVGAADYAEVRRVGDYHYITGVTQDNLKCPCQVPSPEFFTELDGVRIHRFAPPCNPLLREEVTFSVGLHSYVVGSQLPCEPEPDVTVLTSMLSDPAHITAETAKRRLNRGSPPSLANSSASQLSAPSLKATCTIQGHHPDADLIKANLLWRQCMGGNITRVEAENKVEILDCFKPLKEEEDDREISVSADCFKKGPAFPPALPVWARPGYDPPLLETWKRPDYDPPQVWGCPIPPAGPPPVPLPRRKRKPMELSDSTVSQVMADLADARFKVDTPSIEGQDSALGTSSQHDSGPEEKRDDNSDAASYSSMPPLEGEPGDPDLSSGSWSTVSGEDNVVCCSMSYTWTGALITPCSAEEEKLPINPLSNTLLRHHNLVYSTSSRSAGLRQKKVTFDRLQVLDDHYREVVDEMKRLASKVKARLLPLEEACGLTPPHSARSKYGYGAKEVRSLDKKALKHIEGVWQDLLDDSDTPLPTTIMAKNEVFAVEPSKGGKKPARLIVYPDLGVRVCEKRALYDVAQKLPTALMGPSYGFQYSPAQRVDFLLKAWKSKKIPMAFSYDTRCFDSTITEHDIMTEESIYQSCDLQPEARVAIRSLTQRLYCGGPMYNSKGQQCGYRRCRASGVFTTSMGNTMTCYIKALASCRAAKLRDCTLLVCGDDLVAICESQGTHEDEASLRAFTEAMTRYSAPPGDPPVPAYDLELVTSCSSNVSVARDASGNRIYYLTRDPQVPLAKAAWETAKHSPVNSWLGNIIMYAPTLWARIVLMTHFFSVLQSQEQLEKTLAFEMYGSVYSVTPLDLPAIIQRLHGLSAFSLHSYSPSEINRVASCLRKLGVPPLRAWRHRARAVRAKLIAQGGRAAICGIYLFNWAVKTKRKLTPLADADRLDLSSWFTVGAGGGDIYHSMSRARPRNLLLCLLLLSVGVGIFLLPAR", "sequence_length": 3014, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "71a1efef356607d9e35ff7657ce9674fd7b26f949e76a8d197708cac85bf280d", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O39928.json", "taxon_id": "356419", "uniprot_accession": "O39928", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis C virus genotype 4a (isolate ED43)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-core-pf01542.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-core-pf01542.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-env-pf01539.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01539", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-env-pf01539.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns2-pf01538.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01538", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns2-pf01538.yaml" } ], "pfam_ids": [ "PF00998", "PF01001", "PF01006", "PF01506", "PF01538", "PF01539", "PF01542", "PF01543", "PF01560", "PF02907", "PF08300", "PF08301", "PF12941", "PF22027" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTNPKPQRKTKRNTNRRPMDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPIPKARRPEGRSWAQPGYPWPLYGNEGCGWAGWLLSPRGSRPSWGPNDPRGRSRNLGKVIDTLTCGFADLMGYIPLVGAPVGSVARALAHGVRALEDGINYATGNLPGCSFSIFLLALLSCLTVPASAVNYRNVSGIYHVTNDCPNSSIVYEADHHIMHLPGCVPCVREGNQSRCWVALTPTVAAPYIGAPLESLRSHVDLMVGAATVCSGLYIGDLCGGLFLVGQMFSFRPRRHWTTQDCNCSIYTGHITGHRMAWDMMMNWSPTTTLVLAQVMRIPTTLVDLLSGGHWGVLVGVAYFSMQANWAKVILVLFLFAGVDAETHVSGAAVGRSTAGLANLFSSGSKQNLQLINSNGSWHINRTALNCNDSLNTGFLASLFYTHKFNSSGCSERLACCKSLDSYGQGWGPLGVANISGSSDDRPYCWHYAPRPCGIVPASSVCGPVYCFTPSPVVVGTTDHVGVPTYTWGENETDVFLLNSTRPPHGAWFGCVWMNSTGFTKTCGAPPCEVNTNNGTWHCPTDCFRKHPETTYAKCGSGPWITPRCLIDYPYRLWHFPCTANFSVFNIRTFVGGIEHRMQAACNWTRGEVCGLEHRDRVELSPLLLTTTAWQILPCSFTTLPALSTGLIHLHQNIVDVQYLYGVGSAVVSWALKWEYVVLAFLLLADARVSAYLWMMFMVSQVEAALSNLININAASAAGAQGFWYAILFICIVWHVKGRFPAAAAYAACGLWPCFLLLLMLPERAYAYDQEVAGSLGGAIVVMLTILTLSPHYKLWLARGLWWIQYFIARTEAVLHVYIPSFNVRGPRDSVIVLAVLVCPDLVFDITKYLLAILGPLHILQASLLRIPYFVRAQALVKICSLLRGVVYGKYFQMVVLKSRGLTGTYIYDHLTPMSDWPPYGLRDLAVALEPVVFTPMEKKVIVWGADTAACGDIIRGLPVSARLGNEILLGPADTETSKGWRLLAPITAYAQQTRGLFSTIVTSLTGRDTNENCGEVQVLSTATQSFLGTAVNGVMWTVYHGAGAKTISGPKGPVNQMYTNVDQDLVGWPAPPGVRSLAPCTCGSADLYLVTRHADVIPVRRRGDTRGALLSPRPISILKGSSGGPLLCPMGHRAGIFRAAVCTRGVAKAVDFVPVESLETTMRSPVFTDNSTPPAVPQTYQVAHLHAPTGSGKSTKVPAAHAAQGYKVLVLNPSVAATLGFGVYMSKAYGIDPNIRSGVRTITTGAPITYSTYGKFLADGGCSGGAYDIIICDECYSTDSTTILGIGTVLDQAETAGVRLTVLATATPPGSVTTPHSNIEEVALPTTGEIPFYGKAIPLELIKGGRHLIFCHSKKKCDELARQLTSLGLNAVAYYRGLDVSVIPTSGDVVVCATDALMTGFTGDFDSVIDCNTSVIQTVDFSLDPTFSIEITTVPQDAVSRSQRRGRTGRGRLGTYRYVTPGERPSGMFDTAELCECYDAGCAWYELTPAETTTRLKAYFDTPGLPVCQDHLEFWESVFTGLTHIDGHFLSQTKQSGENFPYLVAYQATVSAKVWLAPPSWDTMWKCLIRLKPTLHGPTPLLYRLGSVQNEVVLTHPITKYIMACMSADLEVVTSTWVLVGGVLAALAAYCLSVGSVVIVGRVVLSGQPAVIPDREVLYQQFDEMEECSKHLPLVEHGLQLAEQFKQKALGLLNFAGKQAQEATPVIQSNFAKLEQFWANDMWNFISGIQYLAGLSTLPGNPAIASLMSFTAAVTSPLTTQQTLLFNILGGWVASQIRDSDASTAFVVSGLAGAAVGSVGLGKILVDILPGYGAGVRGAVVTFKIMSGEMPSTEDLVNLLPAILSPGALVVEVVCPAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAARRVTTILSSLTVTSLLRRLHKWINEDCSTPCAESWLWEVWDWVLHVLSDFKTCLKAKFVPLMPGIPLLSWPRGYKGEWRGDGVMHTTCPCGADLAGHIKNGSMRITGPKTCSNTWHGTFPINAYTTGPGVPIPAPNYKFALWRVSAEDYVEVRRVGDFHYVTGVTQDNIKFPCQVPAPELFTEVDGIRIHRHAPKCKPLLRDEVSFSVGLNSFVVGSQLPCEPEPDVAVLTSMLTDPSHITAESARRRLARGSRPSLASSSASQLSPRLLQATCTAPHDSPGTDLLEANLLWGSTATRVETDEKVIILDSFESCVAEQNDDREVSVAAEILRPTKKFPPALPIWARPDYNPPLTETWKQQDYQAPTVHGCALPPAKQPPVPSPRRKRTVQLTESVVSTALAELAAKTFGQSEPSSDRDTDLTTPTETTDSGPIVVDDASDDGSYSSMPPLEGEPGDPDLTSDSWSTVSGSEDVVCCSMSYSWTGALVTPCAAEESKLPISPLSNSLLRHHNMVYATTTRSAVTRQKKVTFDRLQVVDSTYNEVLKEIKARASRVKPRLLTTEEACDLTPPHSARSKFGYGKKDVRSHSRKAINHISSVWKDLLDDNNTPIPTTIMAKNEVFAVNPAKGGRKPARLIVYPDLGSRVCEKRALHDVIKKTALAVMGAAYGFQYSPAQRVEFLLTAWKSKNDPMGFSYDTRCFDSTVTEKDIRVEEEVYQCCDLEPEARKVITALTDRLYVGGPMHNSKGDLCGYRRCRATGVYTTSFGNTLTCYLKATAAIRAAALRDCTMLVCGDDLVVIAESDGVEEDNRALRAFTEAMTRYSAPPGDAPQPAYDLELITSCSSNVSVAHDVTGKKVYYLTRDPETPLARAVWETVRHTPVNSWLGNIIVYAPTIWVRMILMTHFFSILQSQEALEKALDFDMYGVTYSITPLDLPAIIQRLHGLSAFTLHGYSPHELNRVAGALRKLGVPPLRAWRHRARAVRAKLIAQGGRAKICGIYLFNWAVKTKLKLTPLPAAAKLDLSGWFTVGAGGGDIYHSMSHARPRYLLLCLLILTVGVGIFLLPAR", "sequence_length": 3008, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "db6f58c66b0872d4eeaccf31aa53bda33d90f9d2c256c1a1997188ef07077c64", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O39929.json", "taxon_id": "356418", "uniprot_accession": "O39929", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis C virus genotype 5a (isolate SA13)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hcv-ns5a-1a-pf08300.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hcv-ns5a-1a-pf08300.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hcv-ns5a-1b-pf08301.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08301", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hcv-ns5a-1b-pf08301.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns5a-pf01506.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01506", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns5a-pf01506.yaml" } ], "pfam_ids": [ "PF00998", "PF01001", "PF01006", "PF01506", "PF01538", "PF01539", "PF01542", "PF01543", "PF01560", "PF02907", "PF07652", "PF08300", "PF08301", "PF12941", "PF22027" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPIPKARQPTGRSWGQPGYPWPLYANEGLGWAGWLLSPRGSRPNWGPNDPRRKSRNLGKVIDTLTCGFADLMGYIPLVGGPVGGVARALAHGVRVLEDGVNYATGNLPGCSFSIFILALLSCLTVPTSAVPYRNASGVYHVTNDCPNSSIVYEAEDLILHAPGCVPCVRQGNVSRCWVQITPTLSAPSLGAVTAPLRRAVDYLAGGAALCSALYVGDACGAVFLVGQMFTYSPRRHNVVQDCNCSIYSGHITGHRMAWDMMMNWSPTTALVMAQLLRIPQVVIDIIAGAHWGVLFAAAYYASAANWAKVVLVLFLFAGVDANTRTVGGSAAQGARGLASLFTPGPQQNLQLINTNGSWHINRTALNCNDSLQTGFVAGLLYYHKFNSTGCPQRMASCRPLAAFDQGWGTISYAAVSGPSDDKPYCWHYPPRPCGIVPARGVCGPVYCFTPSPVVVGTTDRKGNPTYSWGENETDIFLLNNTRPPTGNWFGCTWMNSTGFVKTCGAPPCNLGPTGNNSLKCPTDCFRKHPDATYTKCGSGPWLTPRCLVHYPYRLWHYPCTLNYTIFKVRMYIGGLEHRLEVACNWTRGERCDLEDRDRAELSPLLHTTTQWAILPCSFTPTPALSTGLIHLHQNIVDTQYLYGLSSSIVSWAVKWEYIVLAFLLLADARICTCLWIMLLVCQAEAALENVIVLNAAAAAGTHGFFWGLLVICFAWHFKGRLVPGATYLCLGIWPLLLLLFLLPQRALALDSSDGGTVGCLVLTILTIFTLTPGYKKMVVLVIWWLQYFIARVEAFIHVWVPPLQVRGGRDAIIMLTCLFHPALGFEVTKILLGILGPLYLLQYSLIKLPYFIRARALLRACLLAKHLACGRYVQAALLHLGRLTGTYIYDHLAPMKDWAASGLRDLAVATEPIIFSPMETKVITWGADTAACGDILAGLPVSARRGHEIFLGPADDIREAGWRLLAPITAYAQQTRGVLGAIIVSLTGRDKNEAEGEVQVLSTATQTFLGTCINGVMWTVFHGAGAKTLAGPKGPVVQMYTNVDKDLVGWPTPPGTRSLTPCTCGSADLYLVTRHADVVPARRRGDTRASLLSPRPISYLKGSSGGPVMCPSGHVVGVFRAAVCTRGVAKALDFIPVENLETTMRSPVFTDNSTPPAVPHEFQVGHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSRAYGVDPNIRTGVRTVTTGAAITYSTYGKFLADGGCSGGAYDVIICDECHSQDATTILGIGTVLDQAETAGARLVVLATATPPGSVTTPHPNIEEVALPSEGEIPFYGRAIPLALIKGGRHLIFCHSKKKCDELAKQLTSQGVNAVAYYRGLDVAVIPATGDVVVCSTDALMTGFTGDFDSVIDCNTTVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRHGIYRYVSSGERPSGIFDSVVLCECYDAGCAWYDLTPAETTVRLRAYLNTPGLPVCQDHLEFWEGVFTGLTNIDAHMLSQTKQGGENFPYLVAYQATVCVRAKAPPPSWDTMWKCMLRLKPTLTGPTPLLYRLGAVQNEITLTHPITKYIMACMSADLEVITSTWVLVGGVVAALAAYCLTVGSVAIVGRIILSGRPAIIPDREVLYQQFDEMEECSASLPYMDEARAIAEQFKEKVLGLIGTAGQKAETLKPAATSMWNRAEQFWAKHMWNFVSGIQYLAGLSTLPGNPAVATLMSFTAAVTSPLTTQQTLLFNILGGWVASQIAPPTAATAFVVSGMAGAAVGSIGLGRVLIDILAGYGAGVAGALVAFKIMCGEKPTAEDLVNLLPSILCPGALVVGVICAAVLRRHIGPGEGAVQWMNRLIAFASRGNHVSPTHYVPETDASAKVTQLLSSLTVTSLLKRLHTWIGEDYSTPCDGTWLRAIWDWVCTALTDFKAWLQAKLLPQLPGVPFLSCQRGYRGVWRGDGVNSTKCPCGATISGHVKNGTMRIVGPKLCSNTWHGTFPINATTTGPSVPAPAPNYKFALWRVGAADYAEVRRVGDYHYITGVTQDNLKCPCQVPSPEFFTELDGVRIHRYAPPCNPLLREEVCFSVGLHSFVVGSQLPCEPEPDVTVLTSMLSDPAHITAETAKRRLDRGSPPSLASSSASQLSAPSLKATCTTQGHHPDADLIEANLLWRQCMGGNITRVEAENKVVILDSFEPLKADDDDREISVSADCFRRGPAFPPALPIWARPGYDPPLLETWKQPDYDPPQVSGCPLPPAGLPPVPPPRRKRKPVVLSDSNVSQVLADLAHARFKADTQSIEGQDSAVGTSSQPDSGPEEKRDDDSDAASYSSMPPLEGEPGDPDLSSGSWSTVSDEDSVVCCSMSYSWTGALITPCSAEEEKLPINPLSNTLLRHHNLVYSTSSRSAGQRQKKVTFDRLQVLDDHYREVVDEMKRLASKVKARLLPLEEACGLTPPHSARSKYGYGAKEVRSLDKKALNHIKGVWQDLLDDSDTPLPTTIMAKNEVFAVEPSKGGKKPARLIVYPDLGVRVCEKRALYDIAQKLPTALMGPSYGFQYSPAQRVEFLLKTWRSKKTPMAFSYDTRCFDSTVTEHDIMTEESIYQSCDLQPEARAAIRSLTQRLYCGGPMYNSKGQQCGYRRCRASGVFTTSMGNTMTCYIKALASCRAAKLRDCTLLVCGDDLVAICESQGTHEDEASLRAFTEAMTRYSAPPGDPPVPAYDLELVTSCSSNVSVAHDASGNRVYYLTRDPQVPLARAAWETAKHSPVNSWLGNIIMYAPTLWARIVLMTHFFSVLQSQEQLEKALAFEMYGSVYSVTPLDLPAIIQRLHGLSAFTLHSYSPSEINRVSSCLRKLGVPPLRAWRHRARAVRAKLIAQGGKAAICGIYLFNWAVKTKRKLTPLADADRLDLSSWFTVGAGGGDIYHSMSRARPRCILLCLLLLTVGVGIFLLPAR", "sequence_length": 3014, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a2a65e5c51abd1d404fbaa1036557235eaa26af06796858c0f7b88b475f8af0b", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O91936.json", "taxon_id": "356390", "uniprot_accession": "O91936", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis C virus genotype 6b (isolate Th580)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns1-pf01560.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01560", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns1-pf01560.yaml" } ], "pfam_ids": [ "PF00998", "PF01001", "PF01006", "PF01506", "PF01538", "PF01539", "PF01542", "PF01543", "PF01560", "PF02907", "PF07652", "PF08300", "PF08301", "PF12941", "PF22027" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTLPKPQRKTKRNTNRRPMDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPIPKARPSQGRTWGQPGYPWPLYGNEGCGWAGWLMSPRGSRPSWGPNDPRRRSRNLGKVIDTLTCGLADLMGYIPVVGGPLGGVAAALAHGVRAIEDGINYATGNLPGCSFSIFILALLSCLTTPASALTYGNSSGLYHLTNDCPRSSIVLEAEAMILHLAGCVPCVRAGNISRCWHPVSPTLAVPNASVPASGFRKHVDLLAGAAVVCSSMYIGDLCGAVFLAGQLATFSPRIHDITQDCNCSVYTGHVTGHRMAWDMMMNWSPTTTLVLSSILRVPEIVLEVFAGGHWGVLIAIAYFGMSGNWLKVIAVLFLFAGVEATTTVGRAAGRSAYLFTSIFSSGPNQKIQLINTNGSWHINRTALNCIDSLQTGFLSALFYRSNFNSTGCSERLGACKPLEHFQQGWGPITHKSNITGPSEDRPYCWHYAPRECSVVPASSVCGPVYCFTPSPVVVGTTDRLGNPTYNWGENETDVFMLESLRPPQGGWFGCTWMNSTGFTKTCGAPPCQLIPGDYNSSSNQLLCPTDCFRKHPEATYQKCGSGPWLTPRCLVDYPYRLWHYPCTVNYTIHKVRMFIGGVEHRFDAACNWTRGDRCDLYDRDRIEMSPLLFSTTQLAILPCSFTTMPALSTGLIHLHQNIVDVQYLYGVSSSIVSWAVKWEYVVLMFLVLADARICTCLWLMLLVGKVEAALERLVVLNAASAAGTAGWCWTLIFLCCVWHVKGRLVPACTYTALGMWPILLVILALPQRAYAWDNSQAASLGVVALLVLTIFTLSPMYKQLLTHAIWWNQYMLARAEAMIHDWVPDLRVRGGRDAIILLTCLLHPHLGFEVTKILLAILAPLYILQHSLLKVPYFVRAHILLRACMFFRKVAAGKYVQACLLRLGAWTGTYIYDHLAPLSEWASDGLRDLAVAVEPVIFSPMEKKIITWGADTAACGDILRGLPVSARLGDLVLLGPADDMRHGGWKLLAPITAYAQQTRGLVGTIVTSLTGRDKNEAEGEVQVVSTATQSFLATTINGVLWTVYHGAGSKNLAGPKGPVCQMYTNVDQDLVGWPAPLGARSLAPCTCGSSDLYLVTRGADVIPARRRGDTRAALLSPRPISTLKGSSGGPLMCPSGHVVGLFRAAVCTRGVAKALDFIPVENMDTTMRSPVFTDNSSPPAVPQTYQVGYLHAPTGSGKSTRVPAAYATQGYKVLVLNPSVAATLSFGAYMSKAHGIDPNIRTGVRTITTGGPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDPTTVLGIGTVLDQAETAGVRLTVLATATPPGSVTVPHPNITETALPTTGEIPFYGKCIPLEFIKGGRHLIFCHSKKKCDELSKQLTSLGLNAVAFYRGVDVAVIPTSGDVVVCATDALMTGYTGDFDSVIDCNVAVTQVVDFSLDPTFSIETTTVPQDAVSRSQRRGRTGRGKPGVYRFVSQGERPSGMFDSVVLCEAYDTGCAWYELTPAETTVRLRAYLNTPGLPVCQDHLEFWEGVFTGLTHIDAHFLSQTKQGGENFAYLVAYQATVCARAKAPPPSWDVMWKCLTRLKPTLTGPTPLLYRLGAVQNEIVTTHPITKYIMTCMSADLEVITSTWVIVGGVLAALAAYCLTVGCVVICGRIVTSGKPAVVPDREVLYQQFDEMEECSKHIPYLVEGQQIAEQFKQKVLGLLQAGTKHAEELKPAIHSTWPRVEEFWRKHMWNFVSGIQYLAGLSTLPGSPAVASLMSFTASLTSPLRTSQTLLLNILGGWIASQVAPPSASTAFVVSGLAGATVASIGLGRVIVDILAGYGAGVAGALVAFKIMSGECPSTEDMVNLLPALLSPGALVVGVVCAAILRRHVGPSEGANQWMNRLIAFASRGNHVSPTHYVPETDASNKVTQILSSLTITSLLRRLHQWIHEDTSTPCASSWLRDVWDWVCTVLSDFKTWLKAKITPRIPGIPFISCQAGYRGVWAGDGVCHTTCSCGAQIAGHVKNGSMKITGPRMCSNTWHGTFPINATTTSPSVPVPAPNYKRALWRVSAEEYVEVERHGDRHYVVGVTADGLKCPCQVPGPEFFTEVDGVRIHRYAPPCKPLLRDEVSFSVGLLEFVVGSQLPCEPEPDVTVVTSMLTDPSHITAETASRRLKRGSPPSLASSSASQLSAPSLKATCTANGDHPDAELIEANLLWRQEMGSNITRVESETKVVILDSFDPLVAEYDDREISVSAECHRPPRPKFPPALPIWARPDYNPPLLQKWQMPGYEPPVVSGCALPPAKPTPIPPPRRKRLIQLDESAVSQALQQLADKVFVEDTSTSEPSSGLGGSIAGPSSPDPTTADDTCSDAGSFSSMPPLEGEPGDPDLSTGSWSTVSEEDDVVCCSMSYTWTGALITPCAAEEEKLPINPLSNSLIRHHNMVYSTTSRSAGLRQKKVTFDRLQVVDQHYQDVLKEIKLRASTVHARLLSTEEACSLTPPHSARSRYGYGARDVRSHTSKAVKHIDSVWEDLLEDNATPIPTTIMAKNEVFCVDPSKGGRKPARLIVYPDLSVRVCEKMALYDVTQKLPKTVMGSAYGFQYSPSQRVEYLLKMWRSKKTPMGFSYDTRCFDSTVTERDIRTEEDIYQSCQLDPTARKAISSLTERLYCGGPMFNSKGESCGYRRCRASGVLTTSLGNTLTCYLKAQAACRAANIKNFDMLVCGDDLVVICESAGVQEDVVALRAFTDAMIRYSAPPGDAPQPTYDLELITSCSSNVSVAHDGTGQRYYYLTRDCTTPLARAAWETARHTPVNSWLGNIIMYAPTIWVRMVLMTHFFSILQCQEQLEAALNFDMYGVTYSVTPLDLPAIIQRLHGMAAFSLHGYSPTELNRVGASLRKLGAPPLRAWRHRARAVRAKLIAQGGKAAICGKYLFNWAVKTKLKLTPLAAASQLDLSGWFVAGYDGGDIYHSVSRARPRLLLLGLLLLTVGVGIFLLPAR", "sequence_length": 3019, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5e95386d4baba7ec8786c5bdfdbdb2365a36c12d317711730cefec892d09f59e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O92529.json", "taxon_id": "356421", "uniprot_accession": "O92529", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis C virus genotype 6d (isolate VN235)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/flavi-dead-pf07652.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07652", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/flavi-dead-pf07652.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-capsid-pf01543.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01543", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-capsid-pf01543.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns4a-pf01006.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01006", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns4a-pf01006.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns4b-pf01001.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns4b-pf01001.yaml" } ], "pfam_ids": [ "PF00998", "PF01001", "PF01006", "PF01506", "PF01538", "PF01539", "PF01542", "PF01543", "PF01560", "PF02907", "PF07652", "PF08300", "PF08301", "PF12941", "PF22027" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTLPKPQKRNQRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPIPKARRQTGRTWAQPGYPWPLYGNEGCGWMGWLLSPRGSRPHWGPNDPRRRSRNLGKVIDTLTCGFADLMGYIPVVGAPLGGVAAALAHGVRAVEDGINYATGNLPGCSFSIFLLALLSCLTTPASAVHYANKSGIYHLTNDCPNSSIVYEAEDFIMHLPGCVPCIKSGNGSSCWLPATLTIAVPNASIPVRGFRRHVDLMVGAAAFCSAMYVGDLCGGIFLVGQLFSFNPRRHWVVQDCNCSIYVGHITGHRMAWDMMMNWSPTATLVLSYVMRIPQVIMDIFTGGHWGILAGILYYSMVANWAKVLCILFLFAGVDATTRTTGAQAARATLGFTGLFQTGAKQNIHLINTNGSWHINRTALNCNDSLNTGFMAALFYLHKFNSTGCPERLSACKSITQFAQGWGPVTYANVSGSSEDRPYCWHYAPRPCGVVSARSVCGPVYCFTPSPVVVGTTDRRGVPTYTWGENESDVFLLESLRPPAGAWYGCTWMNSTGYTKTCGAPPCHIGPPDQFCPTDCFRKHPEATYRKCGSGPWLTPRCLVDYPYRLWHYPCTVNYTIHKVRLFINGLEHRFDAACNWTRGERCELEDRDRIEMSPLLFSTTELAILPCSFTTMPALSTGLVHLHQNIVDIQYLYGLAPALVSWAVRWEYVVLAFLLLADARICACLWMVLLISQVEAALENLIVLNAASAASSQGWIYCLVFICCAWYIKGRVVPGATYAILHLWPLLLLVLALPQRAYAQDREQGASIGVVVIAAITIFTLTPAYKTMLVHFLWWNQYFIARSEALIQQWVPSLRVRGGRDAVILLTCLLHPSLGFDITKMLLALLGPLYLLQVSLLRVPYYVRAHALLRVCILVRRVAGGKYIQAALLKLGAWTGTYIYDHLAPLSTWASDGLRDLAVAVEPVTFSPMEKKIITWGADTAACGDILAGLPVSARLGHLLFLGPADDMKSMGWRLLAPITAYCQQTRGLLGTIVTSLTGRDRNVVEGEIQVLSTATQSFLGTAINGVMWTVYHGAGSKTLAGPKGPVCQMYTNVDQDMVGWPAPPGTRSLTPCTCGASDLYLVTRNADVIPARRRGDTRAGLLSPRPLSTLKGSSGGPLMCPSDHVVGLFRAAVCTRGVAKALDFVPVENMETTMRSPVFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYASQGYKVLVLNPSVAATLGFGSYMSTAHGIDPNIRTGVRTITTGGPITYSTYGKFLADGGCSGGAYDIIICDECHSTDPTTVLGIGTVLDQAETAGVRLTVLATATPPGSVTVPHPNITETALPSTGEVPFYGKAIPLECIKGGRHLIFCHSKKKCDELAKQLRTLGLNAVAFYRGVDVSVIPTAGDVVVCATDALMTGYTGDFDSVIDCNVAVTQIVDFSLDPTFSIETTTVPQDAVARSQRRGRTGRGKPGVYRYVSQGERPSGMFDTVVLCEAYDVGCAWYELTPSETTVRLRAYLNTPGLPVCQDHLEFWEGVFTGMTHIDAHFLSQTKQGGENFAYLVAYQATVCARAKAPPPSWDTMWKCLIRLKPMLTGPTPLLYRLGAVQNEIITTHPITKYIMTCMAADLEVITSTWVLAGGIVAALAAYCLTVGSVVICGRIVTSGKPVPLPDREVLYRQFDEMEECSRHIPYLAEGQQIAEQFKQKILGLLQNTAKQAEDLKPAVQSAWPKLEQFWQKHLWNFVSGVQYLAGLSTLPGNPAVASLMSFSAALTSPLSTSTTLLLNILGGWVASQLAPPTASTAFVVSGLAGAAVGSIGLGKVIIDILAGYGAGVSGALVAFKIMSGEAPAVEDMVNLLPALLSPGALVVGVVCAAVLRRHVGPSEGATQWMNRLIAFASRGNHVSPTHYVPETDASRAVTTILSSLTITSLLRRLHEWISGDWSAPCSCSWLKDVWDWVCTVLSDFKTWLRAKLVPTLPGIPFISCQRGFRGVWRGDGVNYTTCSCGANITGHVKNGSMKIVGPKMCSNVWNNRFPINAITTGPSVPVPEPNYHKALWRVSAEDYVEVVRVNDHHYIVGATADNLKCPCQVPAPEFFTEVDGVRLHRFAPPCRPLMRDDITFSVGLSTYVVGSQLPCEPEPDVVILTSMLTDPDHITAETAARRLARGSPPSLASSSASQLSAPSLKATCTTAGKHPDAELIEANLLWRQEVGGNITRVESENKIIVLDSFDPLIAETDDREISVGAECFNPPRPKFPPALPVWARPDYNPPLLQPWKAPDYEPPLVHGCALPPKGLPPVPPPRKKRVVQLDEGSAKRALAELAQTSFPPSTATLSEDSGRETSTLSSDMTPPREEADRASDDGSYSSMPPLEGEPGDPDLSSGSWSTVSEDHDSVVCCSMSYSWTGALITPCAAEEEKLPISPLSNALIRHHNLVYSTTSRSASLRQKKVTFDRVQVVDQHYYDVLKEIKTKASGVSAKLLSVEEACALTPPHSARSKFGYGAKEVRGLASKAVNHINSVWEDLLEDNSTPIPTTIMAKNEVFCVDAQKGGRKPARLIVYPDLGVRVCEKRALYDVTQKLPIAVMGAAYGFQYSPKQRVDYLLKMWRSKKTPMGFSYDTRCFDSTVTERDIRTEEDIYQCCQLDPVAKKAITSLTERLYCGGPMYNSRGQSCGYRRCRASGVLTTSLGNTLTCYLKAQAACRAAKLKDFDMLVCGDDLVVISESMGVAEDASALRAFTEAMTRYSAPPGDDPQPEYDLELITSCSSNVSVAHDGAGQRYYYLTRDPLTPLSRAAWETARHTPVNSWLGNIIMYAPTIWVRMVLMTHFFAILQSQEILHKALDFDMYGVTYSVTPLDLPYIIQRLHGMAAFSLHGYSPGELNRVASCLRKLGAPPLRAWRHRARAVRAKLIAQGGKHAICGKYLFNWAVRTKLKLTPLRGAANLDLSGWFVSGGSGGDIFHSVSRARPRNLLLCLLLLTVGVGIFLLPAR", "sequence_length": 3013, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "61b3eb4e90c97d02eb9585d4cb50c91278f61f5b99c319db6a6c89b62ef279d6", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O92530.json", "taxon_id": "356422", "uniprot_accession": "O92530", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis C virus genotype 6k (isolate VN405)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hcv-ns5a-1a-pf08300.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hcv-ns5a-1a-pf08300.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hcv-ns5a-1b-pf08301.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08301", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hcv-ns5a-1b-pf08301.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns5a-pf01506.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01506", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns5a-pf01506.yaml" } ], "pfam_ids": [ "PF00998", "PF01001", "PF01006", "PF01506", "PF01538", "PF01539", "PF01542", "PF01543", "PF01560", "PF02907", "PF07652", "PF08300", "PF08301", "PF12941", "PF22027" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTLPKPQRKTKRNTNRRPMDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPIPKARQSQGRHWAQPGYPWPLYGNEGCGWAGWLLSPRGSRPNWGPNDPRRRSRNLGKVIDTLTCGFADLMGYIPVVGAPLGGVAAALAHGVRAIEDGINYATGNLPGCSFSIFLLALLSCLTTPASAVHYRNISGIYHLTNDCPNSSIIYEADNIIMHTPGCVPCVKTGNKSQCWVPVAPTLAVANASVPIRGFRSHVDLLVGSAAACSALYIGDLCGGVFLVGQLFTFRPRQHTTVQECNCSIYTGHITGHRMAWDMMMNWSPTVTFITSSLLRVPQLLLEIALEGHWGVIGALLYYSMVANWAKVFAVLLLFAGVDATTHIGSSASATTNRLTSFFSPGSKQNVQLIKTNGSWHINRTALNCNDSLHTGFIAGLLYAHRFNSSGCPERLSSCRPLHAFEQGWGPLTYANISGPSNDKPYCWHYPPRPCDIVPARSVCGPVYCFTPSPVVVGTTDRKGLPTYTWGANESDVFLLRSTRPPRGSWFGCTWMNSTGFVKTCGAPPCNTRPVGSGNDTLVCPTDCFRKHPEATYARCGSGPWLTPRCLVNYPYRLWHYPCTVNYTIHKVRMFVGGIEHRFEAACNWTRGERCELDDRDRVEMSPLLFSTTQLSILPCSFTTMPALSTGLIHLHQNIVDVQYLYGVSSAVVSWAVKWEYIVLAFLVLAVARVCACLWLMFLVGQAEAALENLIVLNATSAAGSQGWVWGVVFICAAWYIRGRAAPITTYAILQLWPLLLLVLALPRRAYAYNGEEAASLGMLAIVIITIFTLTPAYKTLLISTLWWIQYYIARAEAMLYVWVPSLQVRGGRDAVILLTCLLHPQLGFEVTKAILALLGPLYILQYSLLKTPYFVRAHILLRVCMFLRGVAGGKYVQAALLRLGAWTGTYIYDHLTPLSDWACDGLRDLAVAVEPVVFSPMEKKVITWGADTVACGDIISGLPVSARRGNLIFLGPADDIRDGGWRLLAPITAYAQQTRGLVGTIVTSLTGRDKNEVEGEIQVVSTATQSFLATTVNGVLWTVYHGAGSKTLAGPKGPICQMYTNVDQDLVGWPAPPGARSLTPCTCGSSDLYLVTRNADVIPARRRGDTRAALLSPRPISTLKGSSGGPMLCPSGHVAGIFRAAVCTRGVAKSLDFVPVENMQSTARSPSFSDNTTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGSYMSTAHGIDPNIRTGVRTITTGGAITYSTYGKFLADGGCSGGAYDIIICDECHSTDPTTVLGIGTVLDQAETAGVRLTVLATATPPGSVTVPHPNITEVALSSTGEVPFYGKAIPLEYIKGGRHLIFCHSKKKCDELAKQLTSLGLNAVAFYRGVDVSVIPTSGDVVVCATDALMTGYTGDFDSVIDCNVSVTQVVDFSLDPTFTIETTTMPQDAVSRSQRRGRTGRGKHGVYRYVSQGERPSGIFDTVVLCEAYDTGCAWYELTPSETTVRLRAYLNTPGLPVCQDHLEFWEGVFTGLTHIDAHLLSQTKQGGENFAYLVAYQATVCARAKAPPPSWDTMWKCLIRLKPMLTGPTPLLYRLGAVQNEITTTHPITKYIMTCMSADLEVITSTWVLVGGVLAALAAYCLSVGCVVVCGRISTTGKPVLIPDREVLYQQFDEMEECSRHIPYLVEGQHLAEQFKQKVLGLIQTTTRQAEEIEPVVHSAWPKLEQFWQKHLWNFVSGIQYLAGLSTLPGNPAVASLMSFSASLTSPLSTSTTLLLNILGGWVASQLANPTASTAFVVSGLAGATVGSIGLGRVLVDIIAGYGAGVSGALVAFKIMSGETPSAEDMVNLLPALLSPGALVVGVVCAAILRRHAGPAEGATQWMNRLIAFASRGNHVSPTHYVPETDTSRQVMAILSSLTVTSLLRKLHEWINSDWSTPCSGSWLRDIWDWVCTVLSDFKVWLKSKLVPALPGVPFLSCQRGFRGVWRGDGICRTTCPCGADIVGHVKNGSMRISGSRWCSNIWHGTFPINATTTGPSVPIPEPNYKRALWRVSAEEYVEVARVGDSHFVVGATNQDLKCPCQVPAPEFFTEVDGVRLHRFAPACKPLLRDEISFLVGLNSYAIGSQLPCEPEPDVTVVTSMLVDPSHLTAEAAARRLARGSPPSCASSLASQLSAPSLKATCTTHCAHPDADLIEANLLWRQEVGGNITRVESENKVIVLDSFDPLVPEYDDREPSVPAECHRPNRPKFPPALPIWARPDYNPPLLETWKKPDYAPPLVHGCALPSPVQPPVPPPRRKSVVHLDDSTVATALAELAEKSFPTQPASTPDSDSGHPTTSKSSDQADEGEDTPSEAGSYSSMPPLEGEPGDPDLSSGSWSTVSEEGDSVVCCSMSYSWTGALVTPCAAEEEKLPINPLSNSLIRHHNLVYSTTTRSAAMRQKKVTFDRLQILDQHYNNVVKEVKLRASGVTAKLLSVEEACSLTPPHSARSKFGYGAKDVRSHTSKAINHINSVWEDLLEDNQTPIPTTIMAKNEVFCADVSKGGRKPARLIVYPDLGVRVCEKRALYDVTRKLPTAIMGDAYGFQYSPKQRVDQLLKMWRSKKTPMGFSYDTRCFDSTVTEHDIKTERDVYLSCKLDPVARKAIESLTERLYIGGPMYNSRGQLCGTRRCRASGVLTTSLGNTMTCFIKAEAACRAAGLTNYDMLVCGDDLVVIAESAGVQEDASNLRAFTEAMTRYSAPPGDEPHPAYDLELITSCSSNVSVAHDHTGQRYYYLTRDPTTPLSRAAWETARHTPVNSWLGNIIMYAPAIWVRMVLMTHFFQILQAQEQLDKVLDFDMYGVTYSVSPLQLPAIIQRLHGMAAFSLHGYSPTELNRVGACLRKLGAPPLRAWRHRARAVRAKLIAQGGGAAICGKYLFNWAVKTKLKLTPIPDAARLDLSGWFISGFSGGDIYHSVSRARPRIFLLCLLLLSVGVGIFLLPAR", "sequence_length": 3016, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b3afb4ad8692bae37449dd4f58da50d0d9b011ab350b884df174c26b21d752d2", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O92531.json", "taxon_id": "356425", "uniprot_accession": "O92531", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis C virus genotype 1b (isolate Japanese)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns5a-c-pf12941.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12941", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns5a-c-pf12941.yaml" } ], "pfam_ids": [ "PF00998", "PF01001", "PF01006", "PF01506", "PF01538", "PF01539", "PF01542", "PF01543", "PF01560", "PF02907", "PF07652", "PF08300", "PF08301", "PF12941", "PF22027" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPIPKARRPEGRTWAQPGYPWPLYGNEGMGWAGWLLSPRGSRPSWGPTDPRRRSRNLGKVIDTLTCGFADLMGYIPLVGAPLGGAARALAHGVRVLEDGVNYATGNLPGCSFSIFLLALLSCLTIPASAYEVRNVSGIYHVTNDCSNSSIVYEAADMIMHTPGCVPCVRESNFSRCWVALTPTLAARNSSIPTTTIRRHVDLLVGAAALCSAMYVGDLCGSVFLVSQLFTFSPRRYETVQDCNCSIYPGHVSGHRMAWDMMMNWSPTTALVVSQLLRIPQAVVDMVAGAHWGVLAGLAYYSMVGNWAKVLIVMLLFAGVDGHTHVTGGRVASSTQSLVSWLSQGPSQKIQLVNTNGSWHINRTALNCNDSLQTGFIAALFYAHRFNASGCPERMASCRPIDEFAQGWGPITHDMPESSDQRPYCWHYAPRPCGIVPASQVCGPVYCFTPSPVVVGTTDRFGAPTYSWGENETDVLLLSNTRPPQGNWFGCTWMNSTGFTKTCGGPPCNIGGVGNNTLVCPTDCFRKHPEATYTKCGSGPWLTPRCMVDYPYRLWHYPCTVNFTVFKVRMYVGGVEHRLNAACNWTRGERCDLEDRDRSELSPLLLSTTEWQILPCSFTTLPALSTGLIHLHRNIVDVQYLYGIGSAVVSFAIKWEYILLLFLLLADARVCACLWMMLLIAQAEATLENLVVLNAASVAGAHGLLSFLVFFCAAWYIKGRLVPGAAYALYGVWPLLLLLLALPPRAYAMDREMAASCGGAVFVGLVLLTLSPYYKVFLARLIWWLQYFITRAEAHLQVWVPPLNVRGGRDAIILLTCAVHPELIFDITKLLLAILGPLMVLQAGITRVPYFVRAQGLIRACMLVRKVAGGHYVQMAFMKLAALTGTYVYDHLTPLRDWAHAGLRDLAVAVEPVVFSDMETKLITWGADTAACGDIISGLPVSARRGKEILLGPADSFGEQGWRLLAPITAYSQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWPAPPGARSMTPCTCGSSDLYLVTRHADVVPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPSGHVVGIFRAAVCTRGVAKAVDFIPVESMETTMRSPVFTDNSSPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIEPNIRTGVRTITTGGPITYSTYCKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSITVPHPNIEEVALSNTGEIPFYGKAIPIEAIKGGRHLIFCHSKKKCDELAAKLTGLGLNAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRAQRRGRTGRGRSGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNLPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVTSTWVLVGGVLAALAAYCLTTGSVVIVGRIILSGRPAVIPDREVLYQEFDEMEECASHLPYIEQGMQLAEQFKQKALGLLQTATKQAEAAAPVVESKWRALEVFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQNTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPCSGSWLKDVWDWICTVLSDFKTWLQSKLLPRLPGLPFLSCQRGYKGVWRGDGIMQTTCPCGAQITGHVKNGSMRIVGPKTCSNTWHGTFPINAYTTGPCTPSPAPNYSRALWRVAAEEYVEVTRVGDFHYVTGMTTDNVKCPCQVPAPEFFTEVDGVRLHRYAPVCKPLLREEVVFQVGLNQYLVGSQLPCEPEPDVAVLTSMLTDPSHITAETAKRRLARGSPPSLASSSASQLSAPSLKATCTTHHDSPDADLIEANLLWRQEMGGNITRVESENKVVILDSFDPIRAVEDEREISVPAEILRKPRKFPPALPIWARPDYNPPLLESWKDPDYVPPVVHGCPLPSTKAPPIPPPRRKRTVVLTESTVSSALAELATKTFGSSGSSAVDSGTATGPPDQASDDGDKGSDVESYSSMPPLEGEPGDPDLSDGSWSTVSGEAGEDVVCCSMSYTWTGALITPCAAEESKLPINPLSNSLLRHHSMVYSTTSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKARLLSIEEACKLTPPHSAKSKFGYGAKDVRSLSSRAVNHIRSVWEDLLEDTETPIDTTIMAKNEVFCVQPEKGGRKPARLIVFPDLGVRVCEKMALYDVVSTLPQAVMGPSYGFQYSPGQRVEFLVNTWKSKKCPMGFSYDTRCFDSTVTENDIRTEESIYQCCDLAPEARQAIRSLTERLYVGGPLTNSKGQNCGYRRCRASGVLTTSCGNTLTCYLKATAACRAAKLQDCTMLVNGDDLVVICESAGTQEDAAALRAFTEAMTRYSAPPGDPPQPEYDLELITSCSSNVSVAHDASGKRVYYLTRDPTTPLARAAWETVRHTPVNSWLGNIIMYAPTLWARMILMTHFFSILLAQEQLEKALDCQIYGACYSIEPLDLPQIIERLHGLSAFSLHSYSPGEINRVASCLRKLGVPPLRVWRHRARSVRAKLLSQGGRAATCGKYLFNWAVKTKLKLTPIPAASQLDLSGWFVAGYNGGDIYHSLSRARPRWFMLCLLLLSVGVGIYLLPNR", "sequence_length": 3010, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a66b8ddae9e42931e49a68146618fc377f092fb941bfc09cbb6b42a72885de5f", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P26662.json", "taxon_id": "11116", "uniprot_accession": "P26662", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis C virus genotype 1b (isolate BK)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-capsid-pf01543.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01543", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-capsid-pf01543.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns4a-pf01006.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01006", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns4a-pf01006.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns4b-pf01001.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01001", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns4b-pf01001.yaml" } ], "pfam_ids": [ "PF00998", "PF01001", "PF01006", "PF01506", "PF01538", "PF01539", "PF01542", "PF01543", "PF01560", "PF02907", "PF07652", "PF08300", "PF08301", "PF12941", "PF22027" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRAPRKTSERSQPRGRRQPIPKARRPEGRTWAQPGYPWPLYGNEGLGWAGWLLSPRGSRPSWGPTDPRRRSRNLGKVIDTLTCGFADLMGYIPLVGAPLGGAARALAHGVRVLEDGVNYATGNLPGCSFSIFLLALLSCLTTPASAYEVHNVSGIYHVTNDCSNASIVYEAADLIMHTPGCVPCVREGNSSRCWVALTPTLAARNVTIPTTTIRRHVDLLVGAAAFCSAMYVGDLCGSVFLVSQLFTFSPRRHVTLQDCNCSIYPGHVSGHRMAWDMMMNWSPTTALVVSQLLRIPQAVVDMVAGAHWGVLAGLAYYSMAGNWAKVLIVMLLFAGVDGDTHVTGGAQAKTTNRLVSMFASGPSQKIQLINTNGSWHINRTALNCNDSLQTGFLAALFYTHSFNSSGCPERMAQCRTIDKFDQGWGPITYAESSRSDQRPYCWHYPPPQCTIVPASEVCGPVYCFTPSPVVVGTTDRFGVPTYRWGENETDVLLLNNTRPPQGNWFGCTWMNSTGFTKTCGGPPCNIGGVGNNTLTCPTDCFRKHPEATYTKCGSGPWLTPRCMVDYPYRLWHYPCTVNFTIFKVRMYVGGVEHRLNAACNWTRGERCDLEDRDRPELSPLLLSTTEWQVLPCSFTTLPALSTGLIHLHQNIVDVQYLYGIGSAVVSFAIKWEYVLLLFLLLADARVCACLWMMLLIAQAEAALENLVVLNSASVAGAHGILSFLVFFCAAWYIKGRLVPGATYALYGVWPLLLLLLALPPRAYAMDREMAASCGGAVFVGLVLLTLSPYYKVFLARLIWWLQYFTTRAEADLHVWIPPLNARGGRDAIILLMCAVHPELIFDITKLLIAILGPLMVLQAGITRVPYFVRAQGLIHACMLVRKVAGGHYVQMAFMKLGALTGTYIYNHLTPLRDWPRAGLRDLAVAVEPVVFSDMETKIITWGADTAACGDIILGLPVSARRGKEILLGPADSLEGRGLRLLAPITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAAPKGPITQMYTNVDQDLVGWPKPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPFGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTITTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVTSTWVLVGGVLAALAAYCLTTGSVVIVGRIILSGRPAIVPDRELLYQEFDEMEECASHLPYIEQGMQLAEQFKQKALGLLQTATKQAEAAAPVVESKWRALETFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQSTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPCSGSWLRDVWDWICTVLTDFKTWLQSKLLPQLPGVPFFSCQRGYKGVWRGDGIMQTTCPCGAQITGHVKNGSMRIVGPKTCSNTWHGTFPINAYTTGPCTPSPAPNYSRALWRVAAEEYVEVTRVGDFHYVTGMTTDNVKCPCQVPAPEFFSEVDGVRLHRYAPACRPLLREEVTFQVGLNQYLVGSQLPCEPEPDVAVLTSMLTDPSHITAETAKRRLARGSPPSLASSSASQLSAPSLKATCTTHHVSPDADLIEANLLWRQEMGGNITRVESENKVVVLDSFDPLRAEEDEREVSVPAEILRKSKKFPAAMPIWARPDYNPPLLESWKDPDYVPPVVHGCPLPPIKAPPIPPPRRKRTVVLTESSVSSALAELATKTFGSSESSAVDSGTATALPDQASDDGDKGSDVESYSSMPPLEGEPGDPDLSDGSWSTVSEEASEDVVCCSMSYTWTGALITPCAAEESKLPINALSNSLLRHHNMVYATTSRSAGLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSKAVNHIHSVWKDLLEDTVTPIDTTIMAKNEVFCVQPEKGGRKPARLIVFPDLGVRVCEKMALYDVVSTLPQVVMGSSYGFQYSPGQRVEFLVNTWKSKKNPMGFSYDTRCFDSTVTENDIRVEESIYQCCDLAPEARQAIKSLTERLYIGGPLTNSKGQNCGYRRCRASGVLTTSCGNTLTCYLKASAACRAAKLQDCTMLVNGDDLVVICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLELITSCSSNVSVAHDASGKRVYYLTRDPTTPLARAAWETARHTPVNSWLGNIIMYAPTLWARMILMTHFFSILLAQEQLEKALDCQIYGACYSIEPLDLPQIIERLHGLSAFSLHSYSPGEINRVASCLRKLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTPIPAASRLDLSGWFVAGYSGGDIYHSLSRARPRWFMLCLLLLSVGVGIYLLPNR", "sequence_length": 3010, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "030f6d8aa508f657264feb4ba2650c2962a7e75c009d90ff765613574f3c5658", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P26663.json", "taxon_id": "11105", "uniprot_accession": "P26663", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis C virus genotype 1a (isolate 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-capsid-pf01543.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01543", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-capsid-pf01543.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns4a-pf01006.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01006", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns4a-pf01006.yaml" } ], "pfam_ids": [ "PF00998", "PF01001", "PF01006", "PF01506", "PF01538", "PF01539", "PF01542", "PF01543", "PF01560", "PF02907", "PF07652", "PF08300", "PF08301", "PF12941", "PF22027" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTNPKPQKKNKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPIPKARRPEGRTWAQPGYPWPLYGNEGCGWAGWLLSPRGSRPSWGPTDPRRRSRNLGKVIDTLTCGFADLMGYIPLVGAPLGGAARALAHGVRVLEDGVNYATGNLPGCSFSIFLLALLSCLTVPASAYQVRNSTGLYHVTNDCPNSSIVYEAADAILHTPGCVPCVREGNASRCWVAMTPTVATRDGKLPATQLRRHIDLLVGSATLCSALYVGDLCGSVFLVGQLFTFSPRRHWTTQGCNCSIYPGHITGHRMAWDMMMNWSPTTALVMAQLLRIPQAILDMIAGAHWGVLAGIAYFSMVGNWAKVLVVLLLFAGVDAETHVTGGSAGHTVSGFVSLLAPGAKQNVQLINTNGSWHLNSTALNCNDSLNTGWLAGLFYHHKFNSSGCPERLASCRPLTDFDQGWGPISYANGSGPDQRPYCWHYPPKPCGIVPAKSVCGPVYCFTPSPVVVGTTDRSGAPTYSWGENDTDVFVLNNTRPPLGNWFGCTWMNSTGFTKVCGAPPCVIGGAGNNTLHCPTDCFRKHPDATYSRCGSGPWITPRCLVDYPYRLWHYPCTINYTIFKIRMYVGGVEHRLEAACNWTRGERCDLEDRDRSELSPLLLTTTQWQVLPCSFTTLPALSTGLIHLHQNIVDVQYLYGVGSSIASWAIKWEYVVLLFLLLADARVCSCLWMMLLISQAEAALENLVILNAASLAGTHGLVSFLVFFCFAWYLKGKWVPGAVYTFYGMWPLLLLLLALPQRAYALDTEVAASCGGVVLVGLMALTLSPYYKRYISWCLWWLQYFLTRVEAQLHVWIPPLNVRGGRDAVILLMCAVHPTLVFDITKLLLAVFGPLWILQASLLKVPYFVRVQGLLRFCALARKMIGGHYVQMVIIKLGALTGTYVYNHLTPLRDWAHNGLRDLAVAVEPVVFSQMETKLITWGADTAACGDIINGLPVSARRGREILLGPADGMVSKGWRLLAPITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVENLETTMRSPVFTDNSSPPVVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETITLPQDAVSRTQRRGRTGRGKPGIYRFVAPGERPSGMFDSSVLCECYDAGCAWYELTPAETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLTHIDAHFLSQTKQSGENLPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEITLTHPVTKYIMTCMSADLEVVTSTWVLVGGVLAALAAYCLSTGCVVIVGRVVLSGKPAIIPDREVLYREFDEMEECSQHLPYIEQGMMLAEQFKQKALGLLQTASRQAEVIAPAVQTNWQKLETFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTAAVTSPLTTSQTLLFNILGGWVAAQLAAPGAATAFVGAGLAGAAIGSVGLGKVLIDILAGYGAGVAGALVAFKIMSGEVPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTAILSSLTVTQLLRRLHQWISSECTTPCSGSWLRDIWDWICEVLSDFKTWLKAKLMPQLPGIPFVSCQRGYKGVWRVDGIMHTRCHCGAEITGHVKNGTMRIVGPRTCRNMWSGTFPINAYTTGPCTPLPAPNYTFALWRVSAEEYVEIRQVGDFHYVTGMTTDNLKCPCQVPSPEFFTELDGVRLHRFAPPCKPLLREEVSFRVGLHEYPVGSQLPCEPEPDVAVLTSMLTDPSHITAEAAGRRLARGSPPSVASSSASQLSAPSLKATCTANHDSPDAELIEANLLWRQEMGGNITRVESENKVVILDSFDPLVAEEDEREISVPAEILRKSRRFAQALPVWARPDYNPPLVETWKKPDYEPPVVHGCPLPPPKSPPVPPPRKKRTVVLTESTLSTALAELATRSFGSSSTSGITGDNTTTSSEPAPSGCPPDSDAESYSSMPPLEGEPGDPDLSDGSWSTVSSEANAEDVVCCSMSYSWTGALVTPCAAEEQKLPINALSNSLLRHHNLVYSTTSRSACQRQKKVTFDRLQVLDSHYQDVLKEVKAAASKVKANLLSVEEACSLTPPHSAKSKFGYGAKDVRCHARKAVTHINSVWKDLLEDNVTPIDTTIMAKNEVFCVQPEKGGRKPARLIVFPDLGVRVCEKMALYDVVTKLPLAVMGSSYGFQYSPGQRVEFLVQAWKSKKTPMGFSYDTRCFDSTVTESDIRTEEAIYQCCDLDPQARVAIKSLTERLYVGGPLTNSRGENCGYRRCRASGVLTTSCGNTLTCYIKARAACRAAGLQDCTMLVCGDDLVVICESAGVQEDAASLRAFTEAMTRYSAPPGDPPQPEYDLELITSCSSNVSVAHDGAGKRVYYLTRDPTTPLARAAWETARHTPVNSWLGNIIMFAPTLWARMILMTHFFSVLIARDQLEQALDCEIYGACYSIEPLDLPPIIQRLHGLSAFSLHSYSPGEINRVAACLRKLGVPPLRAWRHRARSVRARLLARGGRAAICGKYLFNWAVRTKLKLTPIAAAGQLDLSGWFTAGYSGGDIYHSVSHARPRWIWFCLLLLAAGVGIYLLPNR", "sequence_length": 3011, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d4a8381a1691d88d8644415bfd839d06d8c7ab92aebfd20386bdfa21f444c595", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P26664.json", "taxon_id": "11104", "uniprot_accession": "P26664", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis C virus genotype 1b (isolate HC-J1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns5a-c-pf12941.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12941", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns5a-c-pf12941.yaml" } ], "pfam_ids": [ "PF00998", "PF01001", "PF01006", "PF01506", "PF01538", "PF01539", "PF01542", "PF01543", "PF01560", "PF02907", "PF07652", "PF08300", "PF08301", "PF12941", "PF22027" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTIPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPIPKVRRPEGRTWAQPGYPWPLYGNEGCGWAGWLLSPRGSRPSWGPTDPRRRSRNLGKVIDTLTCGFADLMGYIPLVGAPLGGAARALAHGVRVLEDGVNYATGNLPGCSFSIFLLALLSCLTVPASAYQVRNSTGLYHVTNDCPNSSIVYEAHDAILHTPGCVPCVREGNVSRCWVAMTPTVATRDGKLPATQLRRHIDLLVGSATLCSALYVGDLCGSVFLIGQLFTFSPRRHWTTQGCNCSIYPGHITGHRMAWDMMMNWSPTAALVMAQLLRIPQAILDMIAGAHWGVLAGIAYFSMVGNWAKVLVVLLLFAGVDAETIVSGGQAARAMSGLVSLFTPGAKQNIQLINTNGSWHINSTALNCNESLNTGWLAGLIYQHKFNSSGCPERLASCRRLTDFDQGWGPISHANGSGPDQRPYCWHYPPKPCGIVPAKSVCGPVYCFTPSPVVVGTTDRSGAPTYNWGANDTDVFVLNNTRPPLGNWFGCTWMNSTGFTKVCGAPPCVIGGGGNNTLHCPTDCFRKHPEATYSRCGSGPWITPRCLVDYPYRLWHYPCTINYTIFKVRMYVGGVEHRLDAACNWTRGERCDLEDRDRSELSPLLLSTTQWQVLPCSFTTLPALSTGLIHLHQNIVDVQYLYGVGSSIASWAIKWEYVVLLFLLLADARVCSCLWMMLLISQAEAALENLVILNAASLAGTRGLVSFLVFFCFAWYLKGRWVPGAAYALYGMWPLLLLLLALPQRAYALDTEVAASCGGVVLVGLMALTLSPYYKRCISWCLWWLQYFLTRVEAQLHVWVPPLNVRGGRDAVILLMCVVHPTLVFDITKLLLAVLGPLWILQASLLKVPYFVRVQGLLRICALARKMVGGHYVQMAIIKLGALTGTYVYNHLTPLRDWAHNGLRDLAVAVEPVVFSQMETKLITWGADTAACGDIINGLPVSARKGREILLGPADGMVSKGWRLLAPITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHVVGIFRAAVCTRGVAKAVDFIPVESLETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSVLGIGTVLDQAETAGARLVVLATATPPGSITVPHANIEEVALSTTGEIPFYGKAIPLEAIKGGRHLIFCHSKKKCDELAAKLVALGVNAVAYYRGLDVSVIPTSGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIYRFVAPGERPSGMFDSSILCECYDTGCAWYELTPAETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLTHIDAHFLSQTKQGGENFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQGEVTLTHPVTKYIMTCMSADLEVVTSTWVLVGGVLAALAAYCLSTGCVVIVGRIVLSGRPAIIPDREVLYREFDEMEECSQHLPYIEQGMMLAEQFKQKALGLLQTASRQAEVIAPTVQTNWQKLEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTAAVTSPLTTSQTLLFNILGGWVAAQLAAPGAATAFVGSGLAGAAVGSVGLGRVLVDILAGYGAGVAGALVAFKIMSGELPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTAILSSLTVTQLLRRLHQWLSSESTTPCSGSWLRDIWDWICEVLSDFKTWLKTKLMPHLPGIPFVSCQHGYKGVWRGDGIMHTRCHCGAEITGHVKNGTMRIVGPKTCRNMWSGTFPINAYTTGPCTPLPAPNYTFALWRVSAEEYVEIRRVGDFHYVTGMTTDNLKCPCQVPSPEFFTELDGVRLHRFAPPCKPLLREEVSFRVGLHDYPVGSQLPCEPEPDVAVLTSMLTDPSHITAAAAGRRLARGSPPSEASSSASQLSAPSLKATCTINHDSPDAELIEANLLWRQEMGGNITRVESENKVVILDSFDPLVAEEDEREISVPAEILRKSRRFTQALPIWARPDYNPPLIETWKKPNYEPPVVHGCPLPPPQSPPVPPPRKKRTVVLTESTLSTALAELAAKSFGSSSTSGITGDNTTTSSEPAPSGCSPDSDAESYSSMPPLEGEPGDPDLSDGSWSTVSSEAGTEDVVCCSMSYTWTGALITPCAAEEQKLPINALSNSLLRHHNLVYSTTSRSACQRQKKVTFDRLQVLDSHYQDVLKEVKAAASKVKANLLSVEEACSLTPPHSAKSKFGYGAKDVRCHARKAVNHINSVWKDLLEDSVTPIQTTIMAKNEVFCVQPEKGGRKPARLIVFPDLGVRVCEKMALYDVVSKLPPAVMGSSYGFQYSPGQRVEFLVQAWKSKRTPMGFSYDTRCFDSTVTESDIRTEEAIYQCCDLDPQARVAIRSLTERLYVGGPLTNSRGENCGYRRCRASGVLTTSCGNTLTCYIKARAACRAAGLQDCTMLVCGDDLVVICESAGVQEDAASLRAFTEAMTRYSAPPGDPPQPEYDLELITSCSSNVSVAHDGTGKRVYYLTRDPTTPLARAAWETARHTPVNSWLGNIIMFAPTLWARMILMTHFFSVLIARDQLEQALDCEIYGACYSIEPLDLPPIIQRLHGLSAFSLHSYSPGEINRVAACLRKLGVPPLRAWRHRARSVRARLLSRGGRAAICGKYLFNWAVRTKLKLTPIAAAGRLDLSGWFTAGYSGGDIYHSVSHARPRWFWFCLLLLAAGVGIYLLPNR", "sequence_length": 3011, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "13de453c6e6c7bc45445fbd270bc622df7d20b7f50c3ffcf697699fd9e9cde79", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q03463.json", "taxon_id": "421877", "uniprot_accession": "Q03463", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis C virus genotype 3k (isolate JK049)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns5a-c-pf12941.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12941", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns5a-c-pf12941.yaml" } ], "pfam_ids": [ "PF00998", "PF01001", "PF01006", "PF01506", "PF01538", "PF01539", "PF01542", "PF01543", "PF01560", "PF02907", "PF07652", "PF08300", "PF08301", "PF12941", "PF22027" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTLPKPQRITKRNINRRPQDVKFPGGGQIVGGVYVLPRRGPKLGVRAVRKTSERSQPRSRRQPIPRARRTEGRSWAQPGYPWPLYGNEGCGWAGWLLSPRGSRPSWGPNDPRRRSRNLGKVIDTLTCGFADLMGYIPLVGAPVGGVARALAHGVRALEDGINFATGNLPGCSFSIFLLALLSCLLTPTAGLEYRNASGLYTVTNDCSNGSIVYEAGDVILHLPGCIPCVRLNNASKCWTPVSPTVAVSRPGAATASLRTHVDMMVGAATLCSALYVGDLCGALFLVGQGFSWRHRQHWTVQDCNCSIYPGHLTGHRMAWDMMMNWSPAMTLIVSQVLRLPQTMFDLVIGAHWGVMAGVAYYSMQGNWAKVFLVLCLFSGVDASTTITGGVAASGAFTITSLFSTGAKQPLHLVNTNGSWHINRTALNCNDSLNTGFIAGLLYYHKFNSSGCVERMSACSPLDRFAQGWGPLGPANISGPSSEKPYCWHYAPRPCDTVPAQSVCGPVYCFTPSPVVVGATDKRGAPTYTWGENESDVFLLESARPPTEPWFGCTWMNGSGYVKTCGAPPCHIYGGREGKSNNSLVCPTDCFRKHPDATYNRCGAGPWLTPRCLVDYPYRLWHYPCTVNYTIFKVRMFVGGLEHRFNAACNWTRGERCNLEDRDRSEMYPLLHSTTEQAILPCSFVPIPALSTGLIHLHQNIVDVQYLYGISSGLVGWAIKWEFVILIFLLLADARVCVVLWMMMLISQAEAALENLIVLNAISAAGTHGIWWSLVAFCVAWHVRGRIFPIAVYSIVGLWPLLLLVLMLPYRAYAWTGTDTSTLGAGVLSLFALFTLSPWYKHWIARLIWWNQYTIARCEAALQIWVPPLLARGARDGIILLAGLFYPALVFDITKLLLAILGPLYILQASLVRVPYFVRAHAVVRLCILVRNITGGKYVQMVLLALARGFNTYLYDHLSPMTDWAAEGLKDLAVAVEPVIFSPMEVKVITWGADTTACGDILCGLPVSARLGKEVLLGPADDYRSMGWRLLAPITAHAQQTRGLFGTIVTSLTGRDKNIVTGEIQVLSTSTQTFLGTSVGGVMWTVYHGAGSRTLAGNKRPALQMYTNVDQDLVGWPSPPGAKSLVPCTCGSADLYLITRDADVLPARRRGDSTASLLSPRPLACLKGSSGGPIMCPSGHVAGIFRAAVCTRGVAKALQFIPVESLSAQTRSPSFSDNSTPPAVPQTFQVGYLHAPTGSGESTKVPASYVAQGYTVLVLNPSVAATLGFGRFMSHAYGIDPNVRTGTRTITTGAKLTYSTYGKFLADGGCSGGAYDVIICDECHAQDATSILGIGTVLDQAETAGARLVVLATATPPGSITVPHSNIEEVALTGEGEIPFYGRAIPLGVIKGGRHLIFCHSKKKCDELAKQLTSLGVNAVAFYRGLDVSVIPTQGDVVVCATDALITGYTGDFDSVIDCNVAVEQYVDFSLDPTFSIETHTVPQDAVSRSQRRGRTGRGKSGTYRYVSPGERPSGMFDSVVLCECYDAGCAWYELTPSETTVRLRAYLSTPGLPVCQDHLEFWEGVFTGLTHIDAHFLSQTKQQGLNFPYLTAYQATVCARAAALPPSWDETWKCLIRLKPTLHGPTPLLYRLGAVQNEICTTHPVTKYIATCMAADLEVATSAWVLLGGVMAALTAYCLSVGSVVIVGHLVLGGKPALVPDKEVLYQQYDEMEECSRAAPYIEQAQGIAQQFKEKVIGLLQQADQKAADIKPIATPYWQKLETFWSKHMWNFVSGIQYLAGLSTLPGNPAIASLMAFTASVTSPLTTNQTLLFNIMGGWVASNLAPPPASTAFVVSGLAGAAVGSIGLGKVLLDILAGYGAGVAGALVAFKIMGGEMPSTEDMVNLLPAILSPGALVVGVICAAILRRHVGPGEGAVQWMNRLIAFASRGNHVAPTHYVPESDAAAKVTALLSSLTVTQLLRRLHQWINEDYPTPCDGNWLYDIWNWVCTVLADFKLWLGAKILPKMPGIPFLSCQKGYRGTWRGDGVVSTRCPCGALLSGHVKNGTMRLVGPRWCANTWHGTFPINGYTTGPSTPAPSYAYSRALWRVASDSYVEVRKVGDFHYVTGTTDDGLKCPCQVPLPEFFTELDGVRLHRYAPVCRPLLRDDVTFTVGLNSYVIGSQLPCEPEPDVAVVTSMLQDPSHITVETAKRRLDRGSPPSLASSSASQLSAPSRKATCTTHGRHPDAELITANLLWRQEMGSNITRVESESKVVILDSFEPLRACDDEDELSVAAECFKKPPKYPPALPIWARPDYNPPLVEPWKDPDYVPPTVHGCALPPQKLPPVPPPRRKRTIVLSESTVSKALASLAEKSFPQPTCSAEDESTSGVGTQSGSLTGPVQLDDDDSDNESHSSMPPLEGEPGDPDLSSGSWSTVSGEEQSVVCCSMSYSWTGALITPCAAEEEKLPISPLSNSLLRHHNLVYSTSSRSAAQRQKKVTFDRLQVLDDHYNTTLKEIKELASGVKAELLSVEEACRLVPSHSARSKFGYGAKEVRSLSSKAINHINSVWEDLLEDNTTPIPTTIMAKNEVFAVAPHKGGRKPARLIVYPDLGVRICEKRALYDVIQKLPSAIMGSAYGFQYSPKQRVEYLLKMWNSKKTPLGFSYDTRCFDSTVTEQDIRVEESIYQACDLKDEARRVITSLTERLYCGGPMFNSKGQHCGYRRCRASGVLPTSFGNTVTCYLKAKAATKAAGIKDPSFLVCGDDLVVIAESAGIDEDKSALRAFTEAMTRYSAPPGDPPQPTYDLELITSCSSNVSVAHDGAGKRYYYLTRDPETPLARAAWETARHTPVNSWLGNIIMYAPTIWVRMVIMTHFFSILQAQEQLEKALDFEMYGAVYSVTPLDLPAIIERLHGLSAFSLHSYSPVELNRVAGALRKLGIPPLRAWRHRARAVRAKLISQGGKAKICGLYLFNWAVRTKAKLTPLPQAGLLDLSRWFTVGAGGNDIYHSVSRARSRHLLLGLLLLTVGVGIFLLPAR", "sequence_length": 3019, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "27b94b8202d0e4f7fa771d21e695247332dd2447fa207b7f31a245c7a8fb240e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q68801.json", "taxon_id": "356417", "uniprot_accession": "Q68801", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis C virus genotype 1b (isolate HCR6)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns1-pf01560.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01560", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns1-pf01560.yaml" } ], "pfam_ids": [ "PF00998", "PF01001", "PF01006", "PF01506", "PF01538", "PF01539", "PF01542", "PF01543", "PF01560", "PF02907", "PF07652", "PF08300", "PF08301", "PF12941", "PF22027" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPIPKARQPEGRAWAQPGYPWPLYGNEGMGWAGWLLSPRGSRPSWGPTDPRRRSRNLGKVIDTLTCGFADLMGYIPLVGAPLGGVARALAHGVRVVEDGVNYATGNLPGCSFSIFLLALLSCLTIPASAYEVRNVSGIYHVTNDCSNSSIVYEAADMIMHTPGCVPCVREGNSSRCWVALTPTLAARNASVPTTAIRRHVDLLVGAAAFCSAMYVGDLCGSVFLVSQLFTFSPRRHETIQDCNCSIYPGHVSGHRMAWDMMMNWSPTTALVVSQLLRIPQAIVDMVAGAHWGVLAGLAYYSMVGNWAKVLIVMLLFAGVDGETRVTGGQIARNAYSLTTLFSSGSAQNIQLINTNGSWHINRTALNCNDSLNTGFLAALFYTHKFNASGCPERLASCRPIDKFDQGWGPITYAEQGGQDQRPYCWHYAPKPCGIVSASKVCGPVYCFTPSPVVVGTTDRFGVPTYSWGENETDVLLLNNTRPPQGNWFGCTWMNGTGFTKTCGGPPCNIGGGGNNTLTCPTDCFRKHPAATYTKCGSGPWLTPRCLVDYPYRLWHYPCTANFTIFKVRMYVGGVEHRLDAACNWTRGERCNLEDRDRLELSPLLLSTTEWQVLPCSFTTLPALSTGLIHLHQNIVDVQYLYGIGSAVVSFAIKWDYIVILFLLLADARVCACLWMMLLIAQAEAALENLVVLNAASVAGAHGILSFLVFFCAAWYIKGKLVPGAAYAFYGVWPLLLLLLALPPRAYAMEREMAASCGGAVFVGLVLLTLSPYYKEFLARLIWWLQYFITRAEAHLQVWIPPLNIRGGRDAIILLACVVHPELIFDITKLLLAILGPLMVLQASITQVPYFVRAQGLIRACMLVRKVAGGHYVQMAFVKLTALTGTYVYDHLTPLRDWAHAGLRDLAVAVEPVVFSDMETKVITWGADTAACGDIILGLPVSARRGREILLGPADSLEGQGWRLLAPITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGACWTVFHGAGSKTLAGPKGPITQMYTNVDLDLVGWQAPPGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSRHAVGIFRAAVCTRGVAKAVDFIPVESMETTMRSPVFTDNSSPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRAITTGAPITYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSNAGEIPFYGKAIPIEVIKGGRHLIFCHSKKKYDELAAKLSALGLNAVAYYRGLDVSVIPTNGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVARSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVSTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEITLTHPMTKFIMACMSADLEVVTSTWVLVGGVLAALAAYCLTTGSVVIVGRIILSGRPAVIPDREVLYREFDEMEECASHLPYIEQGMQLAEQFKQKALGLLQTATKQAEAAAPVVESKWRALETFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLSTQNTLLFNIWGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKIMSGEVPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPAHYVPESDAAARVTQILSGLTITQLLKRLHHWINEDCSTPCSGSWLRDVWDWICTVLTDFKTWLQSKLLPRLPGVPFFSCQRGYKGVWRGDGIMQTTCPCGAQITGHVKNGSMRIVGPKTCSSTWHGTFPINAYTTGPCAPSPAPNYSRALWRVAAEEYVEVTRVGDFHYVTGMTTDNVKCPCQVPAPEFFTEVDGVRLHRYAPACKPLLREEVTFQVGLNQYLVGSQLPCEPEPDVAVLTSMLTDPSHITAETAKRRLARGSPPSLASSSASQLSAPSLKATCTTHHDSPDVDLIEANLLWRQEMGGNITRVESENKVVILDSFDPLRAEEDEREPSVAAEILRKTKRFPPAMPIWARPDYNPPLLESWKDPDYVPPVVHGCPLPPTKAPPIPPPRRKRTVVLTESTVSSALAELATKTFGSSGSSAVDSGTATAPPDQASDDGDQGSDVESYSSMPPLEGEPGDPDLSDGSWSTVSEEAGEDVICCSMSYTWTGALITPCAAEESKLPINPLSNSLLRHHNMVYATTSRSAGLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLSIEEACKLTPPHSARSKFGYGAKDVRNLSSKAVNHIRSVWKDLLEDTETPIDTTVMAKSEVFCVQPEKGGRKPARLIVFPDLGVRVCEKMALYDVVSTLPQAVMGSSYGFQYSPGQRVEFLVNAWKSKKCPMGFSYDTRCFDSTVTESDIRVEESIYQCCDLAPEARQAIKSLTERLYIGGPLTNSKGQNCGYRRCRASGVLTTSCGNTLTCYLKASAACRAAKLRDCTMLVNGDDLVVICESAGTQEDEANLRVFTEAMTRYSAPPGDPPRPEYDLELITSCSSNVSVAHDASGKRVYYLTRDPSTPLARAAWETARHTPVNSWLGNIIMYAPTLWARMILMTHFFSILLAQEQLEKALDCQIYGACYSIEPLDLPQIIERLHGLSAFSLHSYSPGEINRVASCLRKLGVPPLRVWRHRARSVRAKLLSQGGRAATCGKYLFNWAVRTKLKLTPIPAASQLDLSSWFVAGYSGGDIYHSLSRARPRWFMLCLLLLSVGVGIYLLPNR", "sequence_length": 3010, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ad8caf52fcf93b85e490621250efe0ec8d04228c068cd9a24dd1b3238e5d58ac", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q913V3.json", "taxon_id": "421879", "uniprot_accession": "Q913V3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hepatitis C virus genotype 2k (isolate VAT96)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hcv-ns1-pf01560.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01560", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hcv-ns1-pf01560.yaml" } ], "pfam_ids": [ "PF00998", "PF01001", "PF01006", "PF01506", "PF01538", "PF01539", "PF01542", "PF01543", "PF01560", "PF02907", "PF07652", "PF08300", "PF08301", "PF12941", "PF22027" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPIPKDRRSAGKSWGRPGYPWPLYGNEGLGWAGWLLSPRGSRPSWGPTDPRHRSRNLGKVIDTLTCGFADLMGYIPVVGAPVGGVARALAHGVRVLEDGINYATGNLPGCSFSIFLLALLSCMSVPVSAVEVKNTSQIYMATNDCSNNSITWQLEGAVLHVPGCVPCESTGNISRCWIPVTPNVAVRERGALTKGLRTHIDLIVVSATFCSALYIGDVCGAIMIAAQATIISPQHHTFVQDCNCSIYPGHVTGHRMAWDMMMNWSPATTMIMAYFMRVPEVVLDIITGAHWGVMFGLAYFSMQGAWAKVVVILLLTAGVDAQTHTISGHAARTTHGLVSLFTPGSQQNIQLVNTNGSWHINRTALNCNDSLKTGFIAALFYSHKFNSSGCPQRMSSCRSIEEFRIGWGNLEYEENVTNDDNMRPYCWHYPPRPCGIVPAQTVCGPVYCFTPSPVVVGTTDRRGVPTYTWGENDTDVFLLNSTRPPRGAWFGCTWMNSTGFTKTCGAPPCRIRPDFNSSEDLLCPTDCFRKHSEATYTRCGAGPWLTPKCLFHYPYRLWHYPCTINFTIHKIRMFIGGVEHRLEAACNFTRGDRCNLEDRDRSQLSPLLHSTTEWAILPCTFSDMPALSTGLLHLHQNIVDVQYLYGLSPAITKYIVKWEWVVLLFLLLADARVCACLWMLLLLGQAEAALEKLVILHAASAASSHGMLCFIIFFIAAWYIKGRVTPLVTYSYLGMWSFSLLLLALPQQAYALDTTEQGQIGLVLLVVISVFTLSPAYKILLCRSLWWLSYLLVRAEALIQDWVPPWQARGGRDGIIWAATIFCPGVLFDITNWLLAILGPGYLLRSVLTSTPYFVRAQALLRICAAVRHLSGGKYVQMMLLTLGKWTGTYIYDHLSPMSGWAASGLRDLAVAVEPIVFSPMEKKVIVWGAETAACGDILHGLPVSARLGQEVLLGPADEYTSKGWKLLAPITAYAQQTRGLLGTIVVSMTGRDKTEQAGEIQVLSTVTQSFLGTTISGILWTVFHGAGNKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLDPCTCGAVDLYLVTRNADVIPARRQGDRRGALLSPRPLSSLKGSSGGPVLCPRGHAVGIFRAAICTRGAAKSIDFIPIESLDVIIRSPNFTDNSSPPAVPQTYQVGYLHAPTGSGKSTKVPASYAAQGYKVLVLNPSVAATLGFGAYMSKAHGINPNIRTGVRTVTTGESITYSTYGKFLADGGCSGGAYDVIICDECHSVDATTILGIGTVLDQAETAGARLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSQIKGGRHLIFCHSKKKCDELAAALRGMGLNAVAYYRGLDVSVIPTQGDVVVVATDALMTGFTGDFDSVVDCNVAVTQTVDFSLDPTFTVTTQTVPQDAVSRSQRRGRTGRGRLGIYRYVSSGERASGMFDSVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLTHIDAHFLSQTKQAGENFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLTGPTPLLYRLGPVTNETTLTHPVTKYIATCMQADLEIMTSTWVLAGGVLAAIAAYCLATGCVVCIGRVNINQKTIVAPDKEVLYEAFDEMEECASRALLLEEGQRIAEMLKSKIQGLLQQATKQAQDIQPAVQATWPKLEQFWAKHMWNFISGIQYLAGLSTLPGNPAVAAMMAFSAALTSPLPTSTTILLNIMGGWLASQIAPAAGATGFVVSGLVGAAVGSIGLGKILVDVLAGYGAGISGALVAFKIMSGEKPSVEDVVNLLPGILSPGALVVGVICAAILRRHVGQGEGAVQWMNRLIAFASRGNHVAPTHYVAESDASQRVTQLLGSLTITSLLRRLHTWITEDCPVPCAGSWLRDIWDWACTILTDFKNWLSTKLLPKMPGLPFISCQRGHKGAWTGTGIMTTRCPCGAVVSGNVRHGSMRITGPKTCMNTWQGTFPINCYTEGQCAPQPTHNYKTAIWKVAAAEYAEVTRHGSYAYVTGLTNDNLKVPCQLPAPEFFSWVDGVQIHRFAPTPKPFIRDEVSFTVGLNSFVVGSQLPCEPEPDTEVLASMLTDPSHITAEAAARRLARGSPPSEASSSASQLSAPSLRATCTAHAKNYAVEMVDANFFMGSDVTRIESETKVLILDSLDPSVEEEDEREPSVPSEYLLPKKKFPQALPVWARPDYNPPVVETWKRPDYDPPTVSGCALPPRVTAPTPPPRRRRALVLSQSNVGEALQALAIKSFGQLPPSCDSGRSTGMDTTDATDQPALKESTDSEAGSDSSMPPLEGEPGDPDLESGSVEYHPSSQEGEAAPDLDSGSWSTCSEEGGSEVCCSMSYSWTGALITPCGPEEEKLPINPLSNSLLRYHNKVYSTTSRSASQRAKKVTFDRVQLLDSHYDQVLKDIKLAASKVSANLLSIEEACALTPPHSARSKYGFGAKEVRSLSRKAVDHIKSVWKDLLEDQQTPIPTTIMAKNEVFCIDPTKGGKKAARLIVFPDLGVRVCEKMALYDITQKLPQAVMGASYGFQYSPAQRVDFLLRAWKEKKDPMGFSYDTRCFDSTVTERDIRTEESIYLACSLPEEARVAIHSLTERLYVGGPMMNSKGQSCGYRRCRASGVLTTSMGNTITCYVKALAACKAAGIVAPTMLVCGDDLVVISESQGAEEDERNLRVFTEAMTRYSAPPGDPPKPEYDLELITSCSSNVSVALDQHGRRMYYLTRDPSTPLARAAWETARHSPVNSWLGNIIQYAPTIWVRMVLMTHFFSVLMAQETLDQDLNFEMYGAVYSVNPLDLPAIIERLHGLEAFSLHGYSPTELTRVAAALRKLGAPPLRAWKSRARAVRASLISQGGRAATCGFYLFNWAVRTKRKLTPLPAARRLDLSGWFTVGAGGGDIYHSVSRARPRFLLLCLLLLSVGVGIFLLPAR", "sequence_length": 3033, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f57eafeddc3602e0fb6f6e2b203a6e907ecf4c6d2dfbf4713181fe13f753758a", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9QAX1.json", "taxon_id": "356414", "uniprot_accession": "Q9QAX1", "uniprot_release": "2026_03" } ], "pfam_id": "PF12941", "short_name": "HCV_NS5a_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12943", "short_name": "DUF3839", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human hepatitis A virus genotype IB (isolate MBB)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/2b-soluble-pf20758.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20758", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/2b-soluble-pf20758.yaml" } ], "pfam_ids": [ "PF00073", "PF00680", "PF00910", "PF12944", "PF20758" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNMSRQGIFQTVGSGLDHILSLADIEEEQMIQSVDRTAVTGASYFTSVDQSSVHTAEVGSHQVEPLRTSVDKPGSKKTQGEKFFLIHSADWLTTHALFHEVAKLDVVKLLYNEQFAVQGLLRYHTYARFGIEIQVQINPTPFQQGGLICAMVPGDQSYGSIASLTVYPHGLLNCNINNVVRIKVPFIYTRGAYHFKDPQYPVWELTIRVWSELNIGTGTSAYTSLNVLARFTDLELHGLTPLSTQMMRNEFRVSTTENVVNLSNYEDARAKMSFALDQEDWKSDPSQGGGIKITHFTTWTSIPTLAAQFPFNASDSVGQQIKVIPVDPYFFQMTNTNPDQKCITALASICQMFCFWRGDLVFDFQVFPTKYHSGRLLFCFVPGNELIDVSGITLKQATTAPCAVMDITGVQSTLRFRVPWISDTPYRVNRYTKSAHQKGEYTAIGKLIVYCYNRLTSPSNVASHVRVNVYLSAINLECFAPLYHAMDVTTQVGDDSGGFSTTVSTEQNVPDPQVGITTMKDLKGKANRGKMDVSGVQAPVGAITTIEDPVLAKKVPETFPELKPGESRHTSDHMSIYKFMGRSHFLCTFTFNSNNKEYTFPITLSSTSNPPHGLPSTLRWFFNLFQLYRGPLDLTIIIIGATDVDGMAWFTPVGLAVDTPWVEKESALSIDYKTALGAVRFNTRRTGNIQIRLPWYSYLYAVSGALDGLGDKTDSTFGLVSIQIANYNHSDEYLSFSCYLSVTEQSEFYFPRAPLNSNAMLSTESMMSRIAAGDLESSVDDPRSEEDKRFESHIECRKPYKELRLEVGKQRLKYAQEELSNEVLPPPRKKKGLFSQAKISLFYTEEHEIMKFSWRGVTADTRALRRFGFSLAAGRSVWTLEMDAGVLTGRLIRLNDEKWTEMKDDKIVSLIEKFTSNKYWSKVNFPHGMLDLEEIAANSKDFPNMSETDLCFLLHWLNPKKINLADRMLGLSGVQEIKEQGVGLIAECRTFLDSIAGTLKSMMFGFHHSVTVEIINTVLCFVKSGILLYVMQQLNQDEHSHIIGLLRVMNYVDIGCSVISCGKVFSKMLETVFNWQMDSRMMELRTQSFSNWLRDICSGITIFKNFKDAIYWLYTKLNDFYEVNYGKKKDILNILKDNQQKIEKAIEEADKFSILQIQDVEKFEQYQKGVDLIQKLRTVHSMAQVDPNLMVHLSPLRDCIARVHQKLKNLGSINQAMVTRCEPVVCYLYGKRGGGKSLTSIALATKICKHYGVEPEKNIYTKPVASDYWDGYSGQLVCIIDDIGQNTTDEDWSDFCQLVSGCPLRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYVKEAIDRRLHFKVEVNPASFSKNPHNDMLNVNLAKTNDAIKDMSCVDLIMDGHNVSLMDLLSSLVMTVEIRKQNMTAFMELWSQGISDDDNDSAMAEFFQSFPSGEPSNSKLSGFFQSVTNHKWVAVGAAVGILGVLVGGWFVYKHFSRKEEEPIPAEGVYHGVTKPKQVIKLDADPVESQSTLEIAGLVRKNLVQFGVGEKNGCVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITQHFIKKGDVPRALNRLATLVTTVNGTPMLISEGPLKMEEKATYVHKKNDGTTVDLTVDQAWRGKGEGLPGMCGGALVSSNQSIQNAILGIHVAGGNSILVAKLVTQEMFQNIDKKIESQRIMKVEFTQCSMNVVSKTLFRKSPIHHHIDKTMINFPAAMPFSKAEIDPMAMMLSKYSLPIVEEPEDYKEASIFYQNKIVGKTQLVDDFLDLDMAITGAPGIDAINMDSSPGFPYVQERLTKRDLIWLDENGLLLGVHPRLAQRILFNTVMMENCSDLDVVFTTCPKDELRPLEKVLESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDPDCQWDELFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGTALMNTIIYSKHLLYNCCYHVCGSMPSGSPCTALLNSIINNVNLYYVFSKIFGKSPVFFCQALKILCYGDDVLIVFSRDVQIDNLDLIGQKIVDEFKKLGMTATSADKNVPQLKPVSELTFLKRSFNLVEDRIRPAISEKTIWSLIAWQRSNAEFEQNLENAQWFAFMHGYEFYQKFYYFVQSCLEKEMIEYRLKSYDWWRMRFYDQCFICDLS", "sequence_length": 2227, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2c32f0bb52b122871e6ee184e6f01319e2c52df188873be359dd31f0a4f4815c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P13901.json", "taxon_id": "12100", "uniprot_accession": "P13901", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Simian hepatitis A virus genotype V (isolate AGM-27)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/2b-soluble-pf20758.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20758", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/2b-soluble-pf20758.yaml" } ], "pfam_ids": [ "PF00073", "PF00680", "PF00910", "PF12944", "PF20758" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFMMMNMSKQGIFQTVGSGLDHILSLADVEEEQMIQSVDRTAVTGASYFTSVDQSSVHTAEVGAHQTEPLKTSVDKPGSKKTQGEKFFLIHSADWLTTHALFHEVAKLDVVSLLYNEQFAVQGLLRYHTYARFGIEIQVQINPTPFQQGGLICAMVPGDQGYGSIASLTVYPHGLLNCNINNVVRIKVPFIYTRGAYHFKDPQYPVWELTIRVWSELNIGTGTSAYTSLNVLARFTDLELHGLTPLSTQMMRNEFRVSTTENVVNLSNYEDARAKMSFALDQEDWKTDPSQGGGIKITHFTTWTSIPTLAAQFAFNASASVGQQIKVIPVDPYFYQMTNSNPDQKCITALASVCQMFCFWRGDLVFDFQVFPTKYHSGRLLFCFVPGNELIDVSGITLKQATTAPCAVMDITGVQSTLRFRVPWISDTPYRVNRYTKSAHQKGEYTAIGKLIVYCYNRLTSPSNVASHVRVNVYLSAINLECFAPLYHAMDVTSQTGDDSGGFSTTVSTEQNAPDPQVGITTIKDLKGKANRGKMDVSGIQAPVGAITTIEDPVLAKKVPETFPELRPGESRHTSDHMSIYKFMGRSHFLCTFTFNANNREYTFPITLSSTSNPPHGLPSTLRWFFNLFQLYRGPLDLTIIITGATDVDGMAWFTPVGLAVDTPWVEKQSALTIDYKTALGAIRFNTRRTGNIQIRLPWYSYLYAVSGALDGLGDTTDSTFGLVSIQIANYNHSDEYLSFSCYLSVTEQSEFYFPRAPLNSNAMMVSESMLDRIASGDLESSVDDPRSAEDKRFESHIEQGKPYKELRMEVGKQRLKYAMEELSNEILPPPRKVKGLFSQAKISLFYTEDHEIVKLSWKGLTADTRALRRYGFSLAAGRSVWTLEMEAGVLTGRMIRLNDEKWTEIKDDKIVALVEKFTSNKNWSKVNFPHGMLDLEEIASNSKDFPNMSETDLCFLLHWLNPKKINLADRMLGLSGVQEIKEQGVGLIAECRTFLDSIAGTLKSMMFGFHQSVTVEIINTVLCFVKSGILLYVIQQLNQNEHSHIIGLLQVMNYADIGCSVISCGKIFSKMLETVFNWQMDSRMMALRTQSFSNWLRDICSGITIFKNFKDAIFWLYTKLKDYYDSNYGKKKDVLNVLKENQHRIEKAIEEADQFCVLQIQDVEKSEQYQKGVELIQKLRTVHSLAQVDSSLMSHLSPLRDCIARVHQKLKNLGSINQAMVTRCEPVVCYLYGKRGGGKSLTSIALATKICKHYGVEPEKNIYTKPVASDYWDGYSGQLVCIIDDIGQNTTDEDWSDFCQLVSGCPMRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYVKEAIDRRLHYKIEVKPASFYKNAHNDMLNVNLARNNDAIKDMSCVDLLMDGHTVSLSELLNSLVMTVEIRKQNMSEFMKLWSQGVSDDDNDSAVAEFFQSFPSGEPSNSKLSSFFKAVTNHKWVAIGAAVGVLGVLVGGWFVYKHFTKEEPIPTEGVYHGVTKPKQVIKLDADPVDSQSTLEIAGLVRKNLVQFGVGEKNGCVRWVMNALGIKDDWLLVPSHAYKFEKDYQMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITEHFIKKNDVPRALNRLATLVTTVNGTPMLISEGPLKMEEKATYVHKRNDGTTVDLTVDQAWRGKGEGLPGMCGGALISSNQSIQNAILGIHVAGGNSILVAKLVTQEMFQNIEQKAIESQRIMKVEFTQCSMNVVSKTLFKKSPIHHHIDRNMINFPAVMPFSKAEIDPMAVMLSKYSLPIVEEPDDYKMASIYFQNKVMGKTFLVDDFLDIDMAITGAPGIDAINMDSSPGFPYVQEKLTKKDLIWLDENGLLLGVHPRLAQRILYNTVMMENCSDLDVVFTTCPKDELRPLDKVLESKTRAIDACPLDYTILCRIYWGPAISYFQLNPGFHTGVAIGIDPDRHWDELFKTMVRFGDVGLDLDFSSFDASLSPFMIREAGRILSEMSGTPSHFGEALINTIIYSKHLLYNCCYHVYGSMPSGSPCTALLNSIVNNVNLYYVFSKIFRKSPVFFGDALKILCYGDDVLIVFSRNVQIDNLESIGQKIVDEFGKLGMTATSADKSVPKLKPISELTFLKRSFNLVEDRIRPAISEKTIWSLVAWQRSNAEFEQNLENAQWFAFMHGFEFYQKFYHFVQSCLEKEMVEYRLKSYDWWRMKFYDQCFVCDLT", "sequence_length": 2230, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2da8016757a07105572f329ea1f730877989e942a0bf56725c32c0454f734dc8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P14553.json", "taxon_id": "12102", "uniprot_accession": "P14553", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human hepatitis A virus genotype IIA (isolate CF-53)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/2b-soluble-pf20758.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20758", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/2b-soluble-pf20758.yaml" } ], "pfam_ids": [ "PF00073", "PF00680", "PF00910", "PF12944", "PF20758" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNMSRQGIFQTVGSGLDHILSLADIEEEQMIQSVDRTAVTGASYFTSVDQSSVHTAEVGSHQIEPLKTSVDKPGSKKTQGEKFFLIHSADWLTTHALFHEVAKLDVVKLLYNEQFAVQGLLRYHTYARFGIEIQVQINPTPFQQGGLICAMVPGDQSYGSIASLTVYPHGLLNCNINNVVRIKVPFIYTRGAYHFKDPQYPVWELTIRVWSELNIGTGTSAYTSLNVLARFTDLELHGLTPLSTQMMRNEFRVSTTENVVNLSNYEDARAKMSFALDQEDWKSDPSQGGGIKITHFTTWTSIPTLAAQFPFNASDSVGQQIKVIPVDPYFFQMTNSNPDQKCITALASICQMFCFWRGDLVFDFQVFPTKYHSGRLLFCFVPGNELIDVSGITLKQATTAPCAVMDIAGVQSTLRFRVPWIPDTRYRVNRYTKSAHQKGEYTAIGKLIVYCYNRLTSPSNVASHVRVNVYLSAINLECFAPLYHAMDVTTQVGDDSGGFSTTVSTEQNVPDPQVGITTMRDLKGKANRGKMDVSGVQAPVGAITTIEDPVLAKKVPETFPELKPGESRHTSDHMSIYKFMGRSHFLCTFTFNSNNKEYTFPITLSSTSNPPHGLPSTLRWFFNLFQLYRGPLDLTIIITGATDVDGMAWFTPVGLAVDTPWVEKESALSIDYKTALGAVRFNTRRTGNIQIRLPWYSYLYAVSGALDGLGDKTDSTFGLVSIQIANYNHSDEYLSFSCYLSVTEQSEFYFPRAPLNSNAMLSTETMMSRIAAGDLESSVDDPRSEEDRRFESHIESRKPYKELRLEVGKQRLKYAQEELSNEVLPPPRKMKGLFSQAKISLFYTEEHEIMKFSWRGVTADTRALRRFGFSLAAGRSVWTLEMDAGVLTGRLVRLNDEKWTEMKDDKIVSLVEKFTSNKHWSKVNFPHGMLDLEEIAANSKDFPNMSETDLCFLLHWLNPKKINLADRMLGLSGVQEIKEQGIGLIAECRTFLDSITGSLKSMMFGFHHSVTVDIVNIVLCFVKSGILLYVIQQLNQDEHSHIIGLLRVMNYADIGCSVISCGKVFSKMLETVFNWQMDSRMMELRTQSFSNWLRDICSGITIFKSFKDAIYWLYTKLKDFYDMNYGKKKDVLNVLKDNQQRIERAIEEADNFCMLQIQDVEKFEQFQKGVDLIQKLRTVHSMAQVDSSLMIHLSPLRDCIARVHQKLKNLGSINQAMVTRCEPVVCYLYGKRGGGKSLTSIALATKICKHYGVEPEKNIYTKPVASDYWDGYSGQLVCIIDDIGQNTTDEDWSDFCQLVSGCPMRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYVKEAIDRRLHFKIEVKPASFFQNPHNDMLNVNLAKTSDAIKDMSCVDLIMDGHNISLMDLLSSLVMTVEIRKQNMTEFMELWSQGISDDDSAVAEFFQSFPSGEPSSSKLSGFFQSVTNHKWVAVGAAVGILGVLVGGWFVYKHFSRKEEEPIPTEGVYHGVTKPKQVIKLDADPVESQSTLEIAGLVRKNLVQFGVGEKNGCVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITEHFIKKGDVPRALNRLATLVTTVNGTPMLISEGPLKMEEKATYVHKKNDGTTVDLTVDQAWRGKGEGLPGMCGGALISSNQSIQNAILGIHVAGGNSILVAKLVTQEMFQNIDKKIESQRIMKVEFSQCSMNVVSKTLFKKSPIHHHIDKDMINFPAAMPFSRAEIDPMAVMLSKYSLPMVEEPEGYKDVSIFFQNKIMGKSILVDDFLDLDMAITGTPGIDAINMDSSPGFPYVQEKLTKRDLIWLHENGLLLGIHPRLAQRILFNTVMMENCSDLDVVFTTCPKDELRPLDKVLESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDPDKQWDELFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRIMSEISGTPSHFGTALINTIIYSKHLLYNCCYHVYGSMPSGSPCTALLNSIINNINLYYVFAKIFRKSPVFFSQAVRILCYGDDVLVVFSRDIQIDNLDQIGQKIVHEFKELGMTATSADKTVPQLKPVSELTFLKRSFNLVEDRIRPAISEKTIWSLVAWQRSNAEFEQNLENAQWFAFMHGFEFYQKFYYFVQSCLEKEMIEYRLKSYDWWRMRFYDQCFVCDLS", "sequence_length": 2225, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c165b5113a88d546969991ca98058c4c774a0b206c2f67cff992ef35de8be6e8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5Y944.json", "taxon_id": "470591", "uniprot_accession": "Q5Y944", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Avian encephalomyelitis virus (strain L2Z)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hav-vp-pf12944.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12944", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hav-vp-pf12944.yaml" } ], "pfam_ids": [ "PF00073", "PF00548", "PF00680", "PF00910", "PF04970", "PF12944" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKLFSTVGRTVDEVLSVLNDEDTESYAGPDRTAVVGGGFLTTVDQSSVSTATMGSLQDVQYRTAVDIPGSRVTQGERFFLIDQREWNSTQSEWQLLGKIDIVKELLDQSYAVDGLLKYHSYARFGLDVIVQINPTSFQAGGLIAALVPYDQVDIESIVAMTTYCHGKVNCNINYVVRMKVPYIYSRGCYNLRNSAYSIWMLVIRVWSRLQLGSGTSTQITITTLARFVDLELHGLSPLVAQMMRNEFRLSSSSNIVNLANYDDARAKVSLALGQEEFSRDSSSTGGELVHHFSQWTSIPCLAFTFTFPGTVGPGTHIWSTTVDPFSCNLRASSTVHPTNLSSIAGMFCFWRGDIVFEFQVFCTKYHSGRLMFVYVPGDENTKISTLTAKQASTGLTAVFDINGVNSTLVFRCPFISDTPYRVNPTTHKSLWPYATGKLVCYVYNILNAPASVSPSVSINVYKSAADLELYAPVYGVSPTNTSIFAQGKEDEGGFFSVPEVEQHVVEDKEPQGPLHVTPFGAVKAMEDPQLARKTPGTFPELAPGKPRHTVDHMDLYKFMGRAHYLWGHEFTKTDMQYTFQIPLSPIKEGFVTGTLRWFLSLFQLYRGSLDITMTFAGKTNVDGIVYFVPEGVAIETEREEQTPLLTLNYKTSVGAIRFNTGQTTNVQFRIPFYTPLEHIATHSKNAMDSVLGAITTQITNYSAQDEYLQVTYYISFNEDSQFSVPRAVPVVSSFTDTSSKTVMNTYWLDDDELVEESSHSSFDEIEEAQCSKCKMDLGDIVICSGEKAKHFGVYVGDGVVHVDPEGNATNWFMKRKATVKKSKNLDKWCFALSPRIDRTLICETANLMVGREVEYDIFVKNCETYARGIASGDYGTKEGEKWKTLLSAVGVAAMTTTMMAMRHQLLDTSLTKLPQKVGEVTNEVRKILEDTSAGVREFKEKVSSILRKTWPGKTSIKIMKWTFRIVKMCVGVGLCYAHGWDSKPVTAVVTMFSMDFLDLVIDGIEIGRMIIHELTTPKAQGLSEINQVLSIAKNAKDVIKMLIEIFCKVIERITGEHGKKIQWAQDKKEEIMNVLERAEKWITTSDDHSEGIECLKLVRSIQSVIRGEESLKELAGELRAVGTHVLNKLGRLDKPNAPILVRAEPTVLYLYGNRGGGKSLASMAIAVKLCKELGISHVEGIYTKPIMSDFWDGYAGQPVVIMDDLGQSTSDEDWTNFCQLVSSCPLRLNMANLEKKGTQFNSPFIIASSNLSHPCPKTVYCTDAIARRLHIKVKVSPKEEFSTHAMLDVAKAKKAGAYCNLDCLDFQKISDLASTPVSVQDIVLALLHTNVDKQTVMGNIIQYWAQSNPREVFDTMAEGKNSGKYLWLFEKIKTSKWYILGCVGAALSVSVLGVFAYHMIKNHFRDQQHDQSAYSAAIKPLRVVRLEQSDAQSVVDISNVVHGNLVRVGVGPNEARIHWLNNGWGVYNTYILMPYHGIKDADVDDDLYIERAGTIYSTNMKMVQVLFLESREGDLVLINVPRLPKFRDIRNHFSTEENIRRAEGMPGTLCTLDHERFTLVTESDLKMVEAATYVCEDDKGVRTDISVGRSWKAKACTVAGMCGGALVTSNNKMQNAIVGIHVAGGAPAISRVITKEMIEEMLKTRAQCSRIWKTEFVEKKISVGSKTKYHKSPLYDFCPQKVIKCPTKLFYQGEIDVMQVMLAKYSSPIVSEPLGYATVVEAYTNRMVSFFSEPRQLTYDECINGIEGLDAIDLKTSAGFPYNTLSLKKSDLIINGKKAQRLQQDVEKMEEDLHMNRSIQVVFTTCAKDELRPLSKGMLGKTRAIKACPVSFTILFRKYLGYALAQIQSHPGFHTGIAVGVDPDQDWHCMWYSIVTQCDLVVGLDFSNYDASLSPFMIYHAGRVLGQICGLDPRLVDRIMEPIVNSVHQLGSMRYYVDGSMPSGTPATSVLNSIINVVNISHVLCALEKISVFEVFKLSKILTYGDDVLFCIKKESLDQKSFPLSSFVQGLKELGMSPTGADKMEVKVTPVHKMSFLKRTFYVDEWSICHPRISEETVYSMLAWKSDNASMKHVIETSIWFMFHHGPRKYVIFCTCLRGVLCRVGIGLYIPTYKELEVRYDRLVKDRVIDDSF", "sequence_length": 2134, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bb55dc61544ebb75adf707b3b6d53cd09343d2b7ed595cf35a1fa0e0c82ed64f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6WQ42.json", "taxon_id": "475780", "uniprot_accession": "Q6WQ42", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human hepatitis A virus genotype IIIA (isolate NOR-21)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hav-vp-pf12944.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12944", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hav-vp-pf12944.yaml" } ], "pfam_ids": [ "PF00073", "PF00680", "PF00910", "PF12944", "PF20758" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNMSRQGIFQTVGSGLDHILSLADVEEEQMIQSVDRTAVTGASYFTSVDQSSVHTAEVGSHQPEPLKTSVDKPGSKRTQGEKFFLIHSADWLTTHALFHEVAKLDVVKLLYNEQFAVQGLLRYHTYARFGIEIQVQINPTPFQQGGLICAMVPGDQSYGSIASLTVYPHGLLNCNINNVVRIKVPFIYTRGAYHFKDPQYPVWELTIRVWSELNIGTGTSAYTSLNVLARFTDLELHGLTPLSTQMMRNEFRVSTTENVVNLSNYEDARAKMSFALDQEDWKSDASQGGGIKITHFTTWTSIPTLAAQFPFNASDSVGQQIKVIPVDPYFFQMTNTNPEQKCITALASICQMFCFWRGDLVFDFQVFPTKYHSGRLLFCFVPGNELIDVSHITLKQATTAPCAVMDITGVQSTLRFRVPWISDTPYRVNRYTKSSHQKGEYTAIGKLIVYCYNRLTSPSNVASHVRVNVYLSAINLECFAPLYHAMDVTTQVGDDSGGFSTTVSTKQNVPDPQVGITTVKDLKGRANQGKMDISGVQAPVGAITTIEDPVLAKKVPETFPELKPGESRHTSDHMSIYKFMGRSHFLCTFTFNSNNKEYTFPITLSSTSNPPHGLPSTLRWFFNLFQLYRGPLDLTIIITGATDVDGMAWFTPVGLAVDTPWVEKESALSIDYKTALGAVRFNTRRTGNIQIRLPWYSYLYAVSGALDGLGDKTDSTFGLVSIQIANYNHSDEYLSFSCYLSVTEQSEFYFPRAPLNTNAMMSSETMMDRIALGDLESSVDDPRSEEDRKFESHIEKRKPYKELRLEVGKQRLKYAQEELSNEVLPPPRKIKGVFSQAKISLFYTEDHEIMKFSWKGITADTRALRRFGFSLAAGRSVWTLEMDAGVLTGRLVRVNDEKWTEMKDDKIVSLVEKFTSNKHWSKVNFPHGMLDLEEIAANAKEFPNMSETDLCFLLHWLNPKKINLADRMLGLSGIQEIKEKGVGLIGECRAFLDSITSTLKSMMFGFHHSVTVEIINTVLCFVKSGILLYVIQQLNQEEHSHIIGLLRVMNYADIGCSVISCGKVFSKMLETVFNWQMDSRMMELRTQSISNWLRDICSGITIFKSFKDAIYWLYTKIREYYDLNYGNKKDVLNILKDHQQKIERAIEEADNFCVLQIQDVEKFEQYQKGVDLIQKLRTVHSMAQVDPGLTVHLAPLRDCIARVHQKLKNLGSINQAMVPRCEPVVCYLYGKRGGGKSLTSIALATKICKHYGVEPEKNIYTKPVASDYWDGYSGQLVCIIDDIGQNTTDEDWSDFCQLVSGCPMRLNMASLEEKGRHFSSPFIIATSNWSNPSPKTVYVKEAIDRRLHFKVEVKPASFFKNPHNDMLNVNLAKTNDAIKDMSCVDLVMDNHNVSLSELLSSLVMTVEIRKQNMSEFMELWSQGLSDDDNDSAVAEFFQSFPSGEPSGSRLSQFFQSVTNHKWVAVGAAVGVLGVLVGGWYVYKHFTKKQEESIPSEGVYHGVTKPKQVIKLDADPVESQSTLEIAGLVRKNLVQFGVGEKNGCVRWVMNALGIKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQDVVLMKVPTIPKFRDITEHFIKKSDVPRALNRLATLVTTVNGTPMLISEGPLKMEEKATYVHKKNDGTTIDLTVDQAWRGKGEGLPGMCGGALISSNQSIQNAILGIHVAGGNSILVAKLVTQEMFQNIDKKIVESQRIMKVEFTQCSMNVVSKTLFRKSPIHHHIDKNMINFPAVMPFSRAEIDPMAVMLSKYSLPIVDEPDDYKDVSVFFQNKILGKSPLVDDFLDIEMAITGAPGIDAINMDSSPGYPYVQEKLTKRDLIWLDDNGMFLGLHPRLAQRILFNTTMMENCSDLDVVFTTCPKDELRPLDKVLESKTRAIDSCPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDPDRQWDQLFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRILTEMSGAPVHFGEALINTIIYSKHLLYNCCYHVCGSMPSGSPCTALLNSIINNVNLYYVFSKIFKKSPVFFCDAVRILCYGDDVLIVFSRQVQIDNLDSIGQRIVDEFKKLGMTATSADKSVPQLKPVSELTFLKRSFNLVEDRIRPAIAEKTIWSLVAWQRNNAEFEQNLENAQWFAFMHGYEFYQQFYHFVQSCLEKEMIEYRLKSYDWWRMKFNDQCFVCDLS", "sequence_length": 2228, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "569cdf13fe525e3d184a8dbc970bc5a6bc699963229bf554bf6ad1833314fec1", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DWR1.json", "taxon_id": "470593", "uniprot_accession": "Q9DWR1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Avian encephalomyelitis virus (strain Calnek vaccine)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hav-vp-pf12944.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12944", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hav-vp-pf12944.yaml" } ], "pfam_ids": [ "PF00073", "PF00548", "PF00680", "PF00910", "PF04970", "PF12944" ], "protein_name": "Genome polyprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKLFSTVGKTVDEVLSVLNDENTESYAGPDRTAVVGGGFLTTVDQSSVSTATMGSLQDVQYRTAVDIPGSRVTQGERFFLIDQREWNSTQSEWQLLGKIDIVKELLDQSYAVDGLLKYHSYARFGLDVIVQINPTSFQAGGLIAALVPYDQVDIESIAAMTTYCHGKLNCNINNVVRMKVPYIYSRGCYNLRNSAYSIWMLVIRVWSQLQLGSGTSTQITVTTLARFVDLELHGLSPLVAQMMRNEFRLSSSSNIVNLANYEDARAKVSLALGQEEFSRDSSSTGGELLHHFSQWTSIPCLAFTFTFPGTVGPGTQIWSTTVDPFSCNLRASSTVHPTNLSSIAGMFCFWRGDIVFEFQVFCTKYHSGRLMFVYVPGDENTKISTLTAKQASSGLTAVFDINGVNSTLVFRCPFISDTPYRVNPTTHKSLWPYATGKLVCYVYNRLNAPASVSPSVSINVYKSAVDLELYAPVYGVSPTNTSVFAQGKEDEGGFSSVPEVEQHVVEDKEPQGPLHVTPFGAVKAMEDPQLARKTPGTFPELAPGKPRHTVDHMDLYKFMGRAHYLWGHKFTKTDMQYTFQIPLSPIKEGFVTGTLRWFLSLFQLYRGSLDITMTFAGKTNVDGIVYFVPEGVAIETEREEQTPLLTLNYKTSVGAIRFNTGQTTNVQFRIPFYTPLEHIATHSKNAMDSVLGAITTQITNYSAQDEYLQVTYYISFNEDSQFSVPRAVPVVSSFTDTSSKTVMNTYWLDDDELVEESSHSSFDEIEEAQCSKCKMDLGDIVSCSGEKAKHFGVYVGDGVVHVDPEGNATNWFMKRKATVKKSKNLDKWCFALSPRIDRTLICETANLMVGREVEYDIFVKNCETYARGIASGDYGTKEGEKWKTLLSAVGVAAMTTTMMAMRHELLDTSLTKLPQKVGEVTNEVRKILEDTSAGVREFKEKVSSILRKTWPGKTSIKIMKWTCRIVKMCVGVGLCYAHGWDSKTVTAVVTMFSMDFLDLVIDGIEIGRMIIDELTTPKAQGLSEINQVLSIAKNAKDVIKMLIEIFCKVIERITGEHGKKIQWAQDKKEEIMNVLERAEKWITTSDDHSEGIECLKLVRSIQSVIRGEESLKELAGELRAVGTHVLNKLGRLDKPNAPILVRAEPTVLYLYGNRGGGKSLASMAIAVKLCKELGISHVEGIYTKPIMSDFWDGYAGQPVVIMDDLGQSTSDEDWTNFCQLVSSCPLRLNMANLEKKGTQFNSPFIIASSNLSHPCPKTVYCTDAIARRLHIKVKVSPKEEFSTHAMLDVAKAKKAGAYCNLDCLDFQKISDLASTPVSVQDIVLEMLHTNVDKQTLMGDIIQYWAQSNPREVFDTMAEGKNSGKYLWLFEKIKTSKWYILGCVGAVLSVSVLGVFAYHMIKNHFRDQQHDQSAYSAAIKPLRVVRLEQSDAQSVVDISNVVHGNLVRVGVGPNEARIHWLYNGLGVYDTYILMPYHGIKDADVDDDLYIERAGTIYSTNMKMVQVLFLESREGDLVLINVPRLPKFRDIRNHFSTEENIRRAEGMPGTLCTLDHERFTLVTESDLKMVEAATYVCEDDKGVRTDISVGRSWKAKACTVAGMCGGALVTSNNKMQNAIVGIHVAGGAHAISRVITKEMIEEMLKTRAQCSRIWKTEFVEEKISVGSKTKYHKSPLYDFCPQEVIKCPTKLFYQGEIDVMQVMLAKYSSPIVSEPLGYATVVEAYTNRMVSFFSEPRQLTYDECINGIEGLDAIDLKTSAGFPYNTLGLRKSDLIINGKMAQRLQQDVEKMEEDLHMNRSIQVVFTTCAKDELRPLSKVMLGKTRAIEACPVSFTILFRRYLGYALAQIQSHPGFHTGIAVGVDPDQDWHCMWYSIVTQCDLVVGLDFSNYDASLSPFMIYHAGRVLGQICGLDPRLVDRIMEPIVNSVHQLGSMRYYVHGSMPSGTPATSVLNSIINVVNICHVLCALEKISVFEVFKLFKILTYGDDVLLCIKKEYLDQKSFPLSSFVQGLEELGLSPTGADKMEVKVTPVHKMSFLKRTFYVDEWSICHPRISEETVYSMLAWKSDNASMKDLIETSIWFMFHHGPRKYVRFCTWLRGVLCRVGIGLYIPTYKELEVRYDRLVKYRFIDDSF", "sequence_length": 2134, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fdb51012b31197dafa8187de6e2f4e7456455481994fa6d510e1d8910b5cf5d2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9YLS4.json", "taxon_id": "475778", "uniprot_accession": "Q9YLS4", "uniprot_release": "2026_03" } ], "pfam_id": "PF12944", "short_name": "HAV_VP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12952", "short_name": "DUF3841", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12953", "short_name": "DUF3842", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12954", "short_name": "DUF3843", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6859-pf21656.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6859-pf21656.yaml" } ], "pfam_ids": [ "PF12955", "PF21656" ], "protein_name": "Vacuolar sorting protein vps3844", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLLRYFIFFIGGCTLALASGVSYTEASVYMSGLSGNENEVPSISPSDSRLVFAHKLGVSRFHKLKSHSGARKIINEMLHSHSELSSFFYAEKSNTFLTIAGLAESELFDTLNPAFRISSCPSSNAFASLMCRYERQLDSLDNGKTTDIYLNDIGGVISIHDSTGVYSQITTTPYKSLEDYEQLFGEDKASMFDISVKQDRVFLSEIYALKILVEFLSSKSQQERSDTSIVIGQLVGLEALYEKYGKDSKIYQVARENMMTLLSMIKQVSSTYTFILLPPIDSSETSTRYHKRQVDMEAFGEEIEEVVASYEKNYNGRCYISEEACSKATNDCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTIRWAGESCSKQDISVEFQFFFWFTIIGFGLLIFSIMLLFSIGQEELANVLTSTATVIKKTT", "sequence_length": 428, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9f37c632ff680d178fdff0ab8703e406f1d540f334ac6858e66d88d73a6ba1b4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O74728.json", "taxon_id": "284812", "uniprot_accession": "O74728", "uniprot_release": "2026_03" } ], "pfam_id": "PF12955", "short_name": "Vps3844_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12956", "short_name": "DUF3845", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12957", "short_name": "DUF3846", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12958", "short_name": "DUF3847", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12959", "short_name": "DUF3848", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12960", "short_name": "DUF3849", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3850-pf12961.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12961", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3850-pf12961.yaml" } ], "pfam_ids": [ "PF12961" ], "protein_name": "Protein ORFd in retron Ec67", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTRAVRIHQLKIAPKYFNAVVAGQKTAELRKDDRGYKVGDVLSLCEWKHGVFTGREWAAVISHVLPVNDVMAVSEQWVMLSIRPLTPLEALGYVIAGGAV", "sequence_length": 100, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2fb28832fbcf13147581cf746e397725888d7f01faa880d17fbea6a0da6eacf0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P21318.json", "taxon_id": "562", "uniprot_accession": "P21318", "uniprot_release": "2026_03" } ], "pfam_id": "PF12961", "short_name": "DUF3850", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [ { "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3850-pf12961.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12961", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3850-pf12961.yaml" } ], "reason": "PFAM_NOT_IN_CURRENT_ENTRY", "uniprot_accession": "Q06426" } ] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12962", "short_name": "DUF3851", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12963", "short_name": "DUF3852", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12964", "short_name": "DUF3853", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Picosynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3854-pf12965.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12965", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3854-pf12965.yaml" } ], "pfam_ids": [ "PF12965" ], "protein_name": "Uncharacterized protein SYNPCC7002_B0001", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIVSDNFTSSSNTGADLASSVSENRSHFIAESHYREWVEGSGVAPEIARLNVRSLSGMTPYEYLLYSDEPALRRNDGRLRDTWLKRYAFVEHGGWWCSGIDIKTGKDSLWGCFKGDRPRKDREDKKPIKYEHPPRVATEIFTLKVDRGTWRKIAKRHKVELPETDQGFWEWVLAHPELPIIITEGAKKAGALLTAGYCAIGLPGIYNGYRTPKNDHGEPMRQLRHLIPELDLLAKNNRAIAFCFDQDKKPKTIKAVNGAIQTTGALLEKAGAKVSVITWHQDAKGVDDLIVEHGAKALHNRYKHRKPLAVWEMDNLTDITTQVDLTVDQRYLDIDPRAIPKDAQIIFIKSAKGTGKTEWLGKIVKLAQDDCARVLVLTHRIQLAKELARRLDIDHISELDSSPTGGALGMAMCIDSLHPDSQAHFNFMEWHGAHIVLDEIEQVLGHALGSSTCTQDRAKILETFYNLILYALRTGGKLYCSDADLSPISYELIKYILDGCEFKPFTILNTYKPCLEQQRDLFFYEGNDPRDLLTNLRQAIENGEKTLVFTAAQKTASTYSTQNLESLFREKYPDKRILRIDAESVAEPGHPAYGCIDSLNAILPLYDIVLCSPAVETGVSIDIKDHFDSVWGMGSGVQTVNGFCQGLERLRDNVPRHVWIPKFSPHSNRIANGGYTAKAIARDQHRYAELTHKLIGEHAAECSGLEDSLKPFLWAYCRYAALANRGFGSYREAILNKLLSEGYVQKDLSEIDPALAKDYRDELKAVKDHNYLQERVAISKVENPDDRQYEKLKRQRAKSETERHQERHGKLSRSYGLTVTPELVEKDDDGWYSQLQLEYYLTVGKAFCSARDRAKYDQLQHEGFVFKPDINRRSLSPKIHLLELLNIHQFLKPGVTFTGASLEGFKENCLRYAKPIKWILGRTITDKMSPLEIAQALLGKLDRKLEYKGRFGSRDNRQRVYEAIAPNDQREKVFAHWLQRDQAKLGAVSNPCINRFIQEA", "sequence_length": 1000, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a3cc2fc2198aba7a0ce5f5172f079102e6d471bbdce83c9d4d21f5d9496dec5c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q52149.json", "taxon_id": "32049", "uniprot_accession": "Q52149", "uniprot_release": "2026_03" } ], "pfam_id": "PF12965", "short_name": "DUF3854", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12967", "short_name": "DUF3855", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12968", "short_name": "DUF3856", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12969", "short_name": "DUF3857", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12970", "short_name": "DUF3858", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12975", "short_name": "DUF3859", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12976", "short_name": "DUF3860", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12977", "short_name": "DUF3861", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12978", "short_name": "DUF3862", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12979", "short_name": "DUF3863", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12980", "short_name": "DUF3864", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12981", "short_name": "DUF3865", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12982", "short_name": "DUF3866", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12983", "short_name": "DUF3867", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12984", "short_name": "DUF3868", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12985", "short_name": "DUF3869", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12986", "short_name": "DUF3870", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12987", "short_name": "DUF3871", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12988", "short_name": "TraQ_transposon", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12989", "short_name": "DUF3873", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12990", "short_name": "DUF3874", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12991", "short_name": "DUF3875", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12992", "short_name": "DUF3876", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12993", "short_name": "DUF3877", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12994", "short_name": "DUF3878", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12995", "short_name": "DUF3879", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/spore-wall-go0031160.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031160", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/spore-wall-go0031160.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spore-protein-ykvp-cgeb-glycosyl-transferase-like-domain-ipr055259.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spore-protein-ykvp-cgeb-glycosyl-transferase-like-domain-ipr055259.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spore-protein-ykvp-n-terminal-domain-ipr024542.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024542", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spore-protein-ykvp-n-terminal-domain-ipr024542.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glyco-trans-1-2-pf13524.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13524", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glyco-trans-1-2-pf13524.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ykvp-n-pf12996.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF12996", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ykvp-n-pf12996.yaml" } ], "pfam_ids": [ "PF01476", "PF12996", "PF13524" ], "protein_name": "Spore protein YkvP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKILFLESHPMWLYGLPNGFREAGHTVMISGPVSRENITEMIDEFKPDLIVSMGWTPEHSREKQAWIRNATKKVNIPLVYWATEDPLHTQNFTIPLIKKMKPDFVFTVTPSLCKTYESMGIKAAHLDFAFHESIHHQIKPLAKYSCDIAVVANAYPNFLEEHPEVFRSSSLKTLIRPLIRKGIRIDFWGRNWEKMSKYIGREIPRNWIHGYLDYTEAYKVYSSAKIIIGLQNCESQLTQRTYEILGSGGFLLTSDTPAVRGKFKPGRDLIVSSSPKETLEKVKYYLNHDSERKKIQINGKKAVKNDSYRHRAERMLEVLKSRGIIRNLGETIHYVDVLKEKYVIHHVTPGETLSIIASKYNVSLQQLMELNHFKSDQIYAGQIIKIREKLFRNINNKLF", "sequence_length": 399, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7bb11ca79b3670fc03b4e6dd8666f934a294f8cc0386dedb142e034126437c2c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31681.json", "taxon_id": "224308", "uniprot_accession": "O31681", "uniprot_release": "2026_03" } ], "pfam_id": "PF12996", "short_name": "YkvP_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF12997", "short_name": "DUF3881", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-no-vein-c-terminal-ipr024975.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024975", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-no-vein-c-terminal-ipr024975.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nov-c-pf13020.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13020", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nov-c-pf13020.yaml" } ], "pfam_ids": [ "PF13020" ], "protein_name": "Protein NO VEIN-LIKE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQGNRDGSWSLRASAYGGSGNGNGGYLPQTTPVFHNYIVKQQQPIRYNFQTQQNLNFPHPQFGGGANVELIRIDKAVNNTRKSLIAAGDNVSSTRVSQSVLAQLQADTWRSLGIWMQDVPSLRQLMALEGKIIAFIHCFIGARGIVTLHDLEVAICQNEFVGCFDDLGLGPLLQHPLVLLYFPSVYCSTAPVKITSEEIISLLDSYLNTYDIDDVKLDEFLDFVAEAKAVTSKEKLGVRIQNLRMYVSFIQDAKRQEGEILKIVLTELHQKYRILSSKKQRQDKDYCGKHTRFNSPSSEENDSADYEVENVKRSDHFSSCPYSSAEEEVKQLGSSSKKRKAESRNHEKSDSPKLLRRGPSKLRRGHVKQKIPKSADDSDAQIFSVNDADFTLSEGALKLFISTWKETCKELSISVFVKKLLSFYNLGGSEVHGQIKIATAVSSFPFVGLLHVAKELVTEALEEQIPTEITITNLVAGYNDCTGTRSRANMPNPTKSCSTPVTLAHNSVSTDFSIRNQLHTGALWAAQAQESGKKGEEIAYRYFVAKYGKKALVKWVNEHSETGLPYDLIIENRGGNKEYVEVKATVSTGKDYFNLSVKEWEFANEKGESYVIAHVLLGNSNAILTQQRNLVKLRQDGHLRLLILMPSQRNEVNVAF", "sequence_length": 656, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7b9d9617982aaeed718953ac25c7112b0b3ce3641fbe47e82fe2db3155665a68", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A1P8ARG1.json", "taxon_id": "3702", "uniprot_accession": "A0A1P8ARG1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-no-vein-c-terminal-ipr024975.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024975", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-no-vein-c-terminal-ipr024975.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/sacsin-nov-domain-ipr058210.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR058210", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/sacsin-nov-domain-ipr058210.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/sacsin-n-terminal-atp-binding-like-domain-containing-protein-nf047352.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF047352", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/sacsin-n-terminal-atp-binding-like-domain-containing-protein-nf047352.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nov-c-pf13020.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13020", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nov-c-pf13020.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sacs-pf25794.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25794", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sacs-pf25794.yaml" } ], "pfam_ids": [ "PF13020", "PF25794" ], "protein_name": "Protein NO VEIN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQGNHDGSWSLHPSTNNGSGRANGNININTVPGGGYLPQANPVFPNFNQPIRYPIPQFPANFYRPNFPDFSLGNPNFQPHQNLNFLHQQIPHQYGSAANHFLQNHNQNSFSFPPQSIPNNDISISQNHGAFENSSLKRRRQEEVVQVTDVVPKSNFASGESANNSFSVSLPIPIATDDSGVSRVHGEKSSGKPKRKVDVLRIDKAVNKTRKLFVAAGESVSSTRVSRAVLEELQADSWRSLGVQMQDVPSLRQLMAIEGKINAFIHCFVGARRIVTLHDLEVAICRNEFVDSFDDLELGPLLQHPLVLLYFPSISSSTGPVKITSEEIISFLDSYLHTYMTEDVKLDEFLNFVASQKSVTSKEKLGVRIQSLRMYVSFILDAKRQEGETLKVLLTELHQKYHIPSSKKQQRDKSLTVSERADSFALHHKDYCGKHIRFDSSSSDENDNVYEVRNLNSSDHINSCPYPSVAEEMKRLGGSNKKRKGERRNHEKSDSSKLLRKSPSKLQGHAKQEIPKLADDSEAKKVFSVDEADFTLSEGDLRLFISTWKDTCKELSISTFVEKMLSFYNLGGSEGRAQIKRAKAMSSFPFVGLLNVAVTSLRRGMWDSIYDNFQMTSLSDTTNTGSGNQVGEINPIENSELSKTQHVMPPTHCNTVEEIIRRLSLYFEHDLSGAKHIGIFRKLQTCENLLAEQFQVQDFESLGWGGFFAFLEKHMLLLPTQLQRFLSRELQEEFPLEVHVNENLLTLLLSQASEFSSDKVLSRQTLARLVAEQFPSISFKVVGRDSEENFSEIIGKKKSSSKCVLFSATLLGAENSLTSKYLEESLTVGNDTEARSTTLNAVASKEVLDVLLRVPLLSDLNSWCHWDLRYAPQFGPLMGCLNEINSTDLLCLVTRDGKIIRADPSATADSFLEAALQGSAYRTAAQLLSLISLNGRTHLPFSLLKCYAKRAFEVFFYNYSEEMELNDRNSLVQMHGPEKLSTSFDKVIVVGEKAKVAKRDYAASKFLLDCLGYLPGEFRSLVVDILLPGLRSVVKDAPTRVLSACEQTEQRIMLHDAGLLLGIVEWISDYHKFCSSCSPNSSIVENASSNLDSGAGFVQNELEDPVQTKQRCMIVSEKSCEYKEEPHESCHTFGGSGILCDSVGEAFTQTAPEFYDNRASVIDSIRRDEFGLDLTSSGSEMSMLQKQHARLGRALQCLSQELYSQDSHFILELVQNADDNKYPEHVEPTLTFILQKTGIVVLNNECGFMPENIRALCDVGQSTKKGSGGYIGKKGIGFKSVFRVSDAPEIHSNGFHFKFDISEGQIGYILPTVVPPHDIESLSSMLSGRALHLKDAGWNTCITLPFRAIDSERTTVNHIEPMFSDLHPSLLLFLHRLQCIVYRNVLDDSLLVMRKEVVSKNIVKVSCGENSMTWFVASEKLKATNLRDDVQTTEISIGFTLDMLEDGTYRSCMIQEPVFAFLPLRTYGLKFIIQGDFILTSSREDVDEDSPWNQWLLSEFPGLFVDALRSFCSLPSFTQNLGKGVSSYMQLVPLVGEVHGFFSSLPRSIISRLRTTNCLLLEGDGEEWVPPCKVLRNWNEKIRVLLKDGLLQEHLALGFLDKDIVLSDSLSRALGIEDYGPKTLVQILSSLSHKNGCLQSMGFTWLSSILTELYLLFRSSGHGNVELGIDKSLIDDLHKIPFIPLSNGKFTSLDEGAVWLHHDTTGLDLGDVFEAFPVLYGNLRTIDHSLLLASSVDEKSSVDDLVNMLCAIGVQKLSAHEIVKAHILPAFEARSTGAVDGLMVDYLCFVMTHLRSGCHICLKERKYIISELRSKALVLSNYGLKQLGEGSIHFGEEYGNQVNMKKLTKNLDISWHVVDGTYLKHPASKFYACGLKEWREFFQEIGIADFVQVVQVEKSIAEFYSVSHCEKYDINLLSPDLTVKDWESPELVDLLSLLHKSNGRKGCKYLLEVLDRLWDDCYYDKTTVNYNSGTHGIIRSSESSFMRVICDSLWIVSSMDSKLHLSKDLYHDCDDVQSILGMNAPYAVPTVTSVKLLSDIGFKTKVSLDDALEVLESWVHCGDSFKSSISQITRFYKYLWNEMADSKQKITEKLHTLPSVFVPHGIASRQNDMISGIFLSLDDVYWNDSAGVLDEIKEISSQISSVVEPLRRKTLGNIYPGLHDFFVNGCGVPETPSFQEYLKILGQFAHNVSPSSAAKAVFKIFLKWSDDLNSGKSSEDVIHFKERLSELEYTVLPTENDKWVSLHSSFGLVCWCDNEKLKKRFKNKDKIEFISFGENDDEGQEVLQTKVSGLMHSLGIPSISEVVKREAKYEGLQDNTVTVSLVNWALPYAQRYIFTLHHEKYTQTKKTVHSQVKRLQVFVVDKLSYRNVIPQYGISSKKEFKCSSLLQDKALYTTPSLDSHSLFMELSRLFFNGVPDLHLANFLHLIKTMAESGLSEEQMESFILNSQKVHQVPDGEEIWSLKSAVKAKKKAGISLSWLPSSSKTRHGSSKTNTDDSKQELDTSSSKEDVTEALEEKIPIEMTNTNLVSGYDNCAGTSSRASEPNPLHSMHMISGSTSGNQAAMHLNPNLPHEWNNSFTANFSDRDQLHTGTPWAAQAQQTGRKGEEIAYRYFVAKYGNEALVKWVNDQSETGLPYDLMIENRGGKKEYVEVKATVSTRKDYFNLTVREWQFANEKGESYIIAHVLLGNSNAILTQHRNPVKLCQEGHLRLLVLMPNQRNEVNVTF", "sequence_length": 2729, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8dbb93e950801e29309f061585dbd224eb5dd2ddb17a4447e5d132730bb741ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4JTS8.json", "taxon_id": "3702", "uniprot_accession": "F4JTS8", "uniprot_release": "2026_03" } ], "pfam_id": "PF13020", "short_name": "NOV_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3885-ipr024976.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR024976", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3885-ipr024976.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3885-pf13021.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13021", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3885-pf13021.yaml" } ], "pfam_ids": [ "PF13021" ], "protein_name": "Uncharacterized protein YnaE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLIGYIEERFQNLELIPSIYNQWGTGIHFCLGENIYQLKANEELNLKMFRIVYEQTSIIFNELFEQNDDIFLVTNMYKHKKKEKCIRKLKVYQPFLKCKNHLNQIMVKTYPYPFEINKAEEYEMQQFSLLCKPRDLRVTELLKAASNEDFPQKPKFGGYSIDYPDVFFVNITKDIIFFIYDDRGCEVIAHDFKRIRPLYEKYHDWVEEYKCM", "sequence_length": 213, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9e1b0cb57d39e079dd235ccf287a2eb9b916e412d57019d6fa3e47f02157519d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P94483.json", "taxon_id": "224308", "uniprot_accession": "P94483", "uniprot_release": "2026_03" } ], "pfam_id": "PF13021", "short_name": "DUF3885", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13024", "short_name": "DUF3884", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3886-pf13025.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3886-pf13025.yaml" } ], "pfam_ids": [ "PF13025" ], "protein_name": "Uncharacterized protein YqkE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKQKSIDKHQLKDGLQSDIKAKLMEMKSQLKEEDEKRQKREKAEQIRKKKEIEKNKSFEELLNESQMDWHQYK", "sequence_length": 74, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9268187af152e5e45c3ace8927b50fd1d349e1982b1da3e6acdeb1a7f80bdf4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54568.json", "taxon_id": "224308", "uniprot_accession": "P54568", "uniprot_release": "2026_03" } ], "pfam_id": "PF13025", "short_name": "DUF3886", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3887-pf13026.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13026", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3887-pf13026.yaml" } ], "pfam_ids": [ "PF12146", "PF13026" ], "protein_name": "Esterase EstD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRLTVFLSLFLGVMVFGAFDQEAFLFVQHLTSENFESALNMCSNQVKAQLSVQSLSNIWNSLKAQLSDFREIAGYEKIIQAEYEIYNFTLKFDRGEISALVTMDREGKVAGLFFKQATKTEYELPDYVDPESFEEKDITVNGLPGKITIPKGSGPFPAVVLVHGSGPNDMDETIGPNKIFKDIAYGLSSKGIIVLRYHKRTFVEKVDPTTLTVEKEVIEDALEAVKILKERKDVSRVYVLGHSLGAMLTPEIAERSKADGVVMIAPPARPLEEVMEDQLKYLQSLGLASNVEETLNILEKLKRKEIPPDEFVLGAPAKYFYDLRERDPASIAKRLTIPMLLIFGGRDYQVTEKDQEIWLKELSGRENVKILVFDDLNHLMISGEGKSTPVEYMKKGHVDKRVIDEIARWMVK", "sequence_length": 412, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "546ef6f082fb829510252ad580ff6a655461d2cc2e39f802bc277d3120c5133d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9WYH1.json", "taxon_id": "243274", "uniprot_accession": "Q9WYH1", "uniprot_release": "2026_03" } ], "pfam_id": "PF13026", "short_name": "DUF3887", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13027", "short_name": "DUF3888", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3889-pf13028.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13028", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3889-pf13028.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf3889-3-10-450-390.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.450.390", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf3889-3-10-450-390.yaml" } ], "pfam_ids": [ "PF13028" ], "protein_name": "Uncharacterized protein YhdC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSLPYTIALLFCGLIIVSMAAKGHSTDTDESVQKWEQLAWSKIQDEYKGASFSDYAYMGRTEVNDQQTKDVFRVTVRQKDDTFSVRAEVYFHPVTNHMISINVFRL", "sequence_length": 107, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dd0510e5fec78ff2a0adf991ba9f3de6fa9540fc8d3948d5d2c7b8b42ef9d030", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O07531.json", "taxon_id": "224308", "uniprot_accession": "O07531", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3889-pf13028.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13028", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3889-pf13028.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf3889-3-10-450-390.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.450.390", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/protein-of-unknown-function-duf3889-3-10-450-390.yaml" } ], "pfam_ids": [ "PF13028" ], "protein_name": "Uncharacterized protein YqzG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMIKQCVICLSLLVFGTTAAHAEETPLVTARHMSKWEEIAVKEAKKRYPLAQVLFKQKVWDRKRKDEAVKQYHLTLREGSKEFGVFVTISFDPYSQKVNKIAILEEYQ", "sequence_length": 108, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dd1bcb49207aa8235d3cef6fdd9ab8b8cd27431bc3ca5adfdc6585eeab4a8964", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32019.json", "taxon_id": "224308", "uniprot_accession": "O32019", "uniprot_release": "2026_03" } ], "pfam_id": "PF13028", "short_name": "DUF3889", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13029", "short_name": "DUF3890", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13030", "short_name": "DUF3891", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { 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"link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/abc-type-transport-auxiliary-lipoprotein-component-3-40-50-10610.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.50.10610", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/abc-type-transport-auxiliary-lipoprotein-component-3-40-50-10610.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AB38", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF13036" ], "protein_name": "Penicillin-binding protein activator LpoB", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "278dfcc61f27007514306d1b18cc37bd1c76ad487cc67cd088915e94c112a47e", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDQTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ", "sequence_length": 213, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "278dfcc61f27007514306d1b18cc37bd1c76ad487cc67cd088915e94c112a47e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AB38.json", "taxon_id": "83333", "uniprot_accession": "P0AB38", "uniprot_release": "2026_03" } ], "pfam_id": "PF13036", "short_name": "LpoB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13038", "short_name": "DUF3899", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis 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"MDFEIRFLSFYVIQVEGKDEQANKQFKHFQTLDTGEFEESELKDFLDGELKKIVKRKADRHPQSEQVPTKIGHFIVEPGHELDSNPNYNMFNRARLAETKEDFNELSEQFVRTYLDTSAVRGGVFLVASAVPRKYFDESFVFIMKCDFEPKVARISDASSLIKKVEMAITTKNMKSIQYPYMPEEGMVEEGELKIHQASHARYFEDFLKFVEYGESMPEIMKNQVMNMVQEHVYETFEDNSEELKQFEHDIEIWEASEKREIQERLDTHQVIEASAQIIEHTPEAQLKMKVGETEIKGLLADFGDSIHLAKVNGRYVALIEAETISFEKGSSPVEFYKPEGLHEVIERIRNKTEQD", "sequence_length": 356, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "63b4c6993d95d7657d3c3d49583ef9a950e3c54e245e650a3b8649fae5a37bb7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O06490.json", "taxon_id": "224308", "uniprot_accession": "O06490", "uniprot_release": "2026_03" } ], "pfam_id": "PF13039", "short_name": "DUF3900", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { 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"data/traits/sequence/domain/interpro/upf0174-like-n-terminal-domain-ipr025217.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/upf0174-like-n-terminal-domain-ipr025217.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3944-pf13099.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13099", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3944-pf13099.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ubiq-cyt-c-chap-pf03981.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03981", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ubiq-cyt-c-chap-pf03981.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P75617", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03981", "PF13099" ], "protein_name": "UPF0174 protein YaaW", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d5bc87bd550ab0dd0c71bb45b4b3aa657ec67f3d8e1dbba8162684de8ef1b5d2", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNVNYLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHRRNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRNTWKKMDEEHKQEFLHAVDARVNELEELLPLLMKDKLLAKGVSHLLSSQLTRILRTHAAMSVLGHGLLRGAGLGGPVGAALNGVKAVSGSAYRVTIPAVLQIACLRRMVSATQV", "sequence_length": 237, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d5bc87bd550ab0dd0c71bb45b4b3aa657ec67f3d8e1dbba8162684de8ef1b5d2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75617.json", "taxon_id": "83333", "uniprot_accession": "P75617", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Helicobacter pylori (strain J99 / ATCC 700824)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3944-pf13099.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13099", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3944-pf13099.yaml" } ], "pfam_ids": [ "PF03981", "PF13099" ], "protein_name": "UPF0174 protein jhp_1494", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYKYDRDLEFLKQLESSDLLDLFEVLVFGKDGEKRHNEKLTSSIEYKRHGDDYAKYAERIAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKVNYNKKTETTLIEQNMLSKILERSLEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLTLFKMGGFKSYQLAVIVANAVAKTILGRGLSLAGNQVLTRTLSFLTGPVGWIITGVWTAIDIAGPAYRVTIPACIVVATLRLKTQQANEDKKSLQIESV", "sequence_length": 253, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b9e39aabd586e0b597c1ec4a6935dde344a745f38698de5625b4452440a4c8ae", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZJ24.json", "taxon_id": "85963", "uniprot_accession": "Q9ZJ24", "uniprot_release": "2026_03" } ], "pfam_id": "PF13099", "short_name": "DUF3944", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13101", "short_name": "DUF3945", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13102", "short_name": "Phage_int_SAM_5", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13104", "short_name": "DUF3956", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13105", "short_name": "DUF3959", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13106", "short_name": "DUF3961", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13107", "short_name": "DUF3964", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13108", "short_name": "DUF3969", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13110", "short_name": "DUF3966", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13111", "short_name": "pPIWI_RE_X", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13112", "short_name": "DUF3965", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3970-pf13113.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13113", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3970-pf13113.yaml" } ], "pfam_ids": [ "PF13113" ], "protein_name": "Uncharacterized protein YvzF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQVRLAGKQEEIEQLIRSFEQHYDVSYTSKEYGRTNPKYKYSKDSRVYLELKLKSAKIEK", "sequence_length": 61, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "360e5bd8a2a6fc28037ccea20958df8aeb6f202218e7e57f18d72b40d1eb6a3f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0H3R3.json", "taxon_id": "224308", "uniprot_accession": "C0H3R3", "uniprot_release": "2026_03" } ], "pfam_id": "PF13113", "short_name": "DUF3970", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/asma2-domain-containing-protein-yhdp-nf008148.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008148", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/asma2-domain-containing-protein-yhdp-nf008148.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/yhdp-family-protein-tigr02099.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR02099", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/yhdp-family-protein-tigr02099.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/yhdp-central-domain-ipr025263.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025263", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/yhdp-central-domain-ipr025263.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/yhdp-pf13116.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13116", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/yhdp-pf13116.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P46474", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF13116" ], "protein_name": "Intermembrane phospholipid transporter YhdP", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e4fb56fb7f25a1f321672d3a7959049db7db2d53cc4fec543af3dddf8fe2888e", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRRLPGILLLTGAALVVIAALLVSGLRIALPHLDAWRPEILNKIESATGMPVEASQLSASWQNFGPTLEAHDIRAELKDGGEFSVKRVTLALDVWQSLLHMRWQFRDLTFWQLRFRTNTPITSGGSDDSLEASHISDLFLRQFDHFDLRDSEVSFLTPSGQRAELAIPQLTWLNDPRRHRAEGLVSLSSLTGQHGVMQVRMDLRDDEGLLSNGRVWLQADDIDLKPWLGKWMQDNIALETAQFSLEGWMTIDKGDVTGGDVWLKQGGASWLGEKQTHTLSVDNLTAHITRENPGWQFSIPDTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRSDELRIRASNLELAGLEGIRPLAAKLSPALGDVWRSTQPSGKINTLALDIPLQAADKTRFQASWSDLAWKQWKLLPGAEHFSGTLSGSVENGLLTASMKQAKMPYETVFRAPLEIADGQATISWLNNNKGFQLDGRNIDVKAKAVHARGGFRYLQPANDEPWLGILAGISTDDGSQAWRYFPENLMGKDLVDYLSGAIQGGEADNATLVYGGNPQLFPYKHNEGQFEVLVPLRNAKFAFQPDWPALTNLDIELDFINDGLWMKTDGVNLGGVRASNLTAVIPDYSKEKLLIDADIKGPGKAVGPYFDETPLKDSLGATLQELQLDGDVNARLHLDIPLNGELVTAKGEVTLRNNSLFIKPLDSTLKNLSGKFSFINSDLQSEPLTASWFNQPLNVDFSTKEGAKAYQVAVNLNGNWQPAKTGVLPEAVNEALSGSVAWDGKVGIDLPYHAGATYNIELNGDLKNVSSHLPSPLAKPAGEPLAVNVKVDGNLNSFELTGQAGADNHFNSRWLLGQKLTLDRAIWAADSKTLPPLPEQSGVELNMPPMNGAEWLALFQKGAAESVGGAASFPQHITLRTPMLSLGNQQWNNLSIVSQPTANGTLVEAQGREINATLAMRNNAPWLANIKYLYYNPSVAKTRGDSTPSSPFPTTERINFRGWPDAQIRCTECWFWGQKFGRIDSDITISGDTLTLTNGLIDTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAEFFGVTTPIRQSSFNVDYDLHWRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRFDFRDTFGEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEAVVAPEISATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYHISGPLDDPQINEVLRQPRKEKAQ", "sequence_length": 1266, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e4fb56fb7f25a1f321672d3a7959049db7db2d53cc4fec543af3dddf8fe2888e", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P46474.json", "taxon_id": "83333", "uniprot_accession": "P46474", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/yhdp-pf13116.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13116", "section": "canonical_examples", "url": 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"data/traits/sequence/family/pfam/duf3950-pf13132.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13132", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3950-pf13132.yaml" } ], "pfam_ids": [ "PF13132" ], "protein_name": "Uncharacterized protein YlcI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTKNRTRRTTTRNIRFPNQMIEQINIALEQKGSGNFSAWVIEACRRRLTSEKRAYTSIKSDEE", "sequence_length": 64, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "366df26a646208e1620c12c040abe102824819074a8e8ff74fa755f35c297958", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5A607.json", "taxon_id": "83333", "uniprot_accession": "A5A607", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": 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"NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P52124", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF13148", "PF30336" ], "protein_name": "Protein YfjI", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "268b7b94a9aad9aaddc76ab45c51e64256dc3180781a462fe4f1139960dc07a7", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MFNGRPFPVDAFPKIIRNAIYEVEQHTQAPQGLIAASALGVISLACQNRIDVCRLNNLRGPVSLFLMTLAESGERKSTVDKLLMKPLYQLEEDLFEKYTHDLTAWRNDEAIFNIEKKALMSKLKSDIRRNKDHLATNERLKELLTTNPKAPVRFKFLFNDATPAAIKAHLCGHWRSVGIMSDEAGIIFNGYTLNELPFINKMWDGSIFTVERKNEPEKLIRDARITLSLMVQPNVFKGYIDRKGDMAKGIGFFARCLMCQPASTQGNRKISNPIFSNEHLPVFHQRLMEIVNESIIKINENNRICLRFSAEAERHWIEFYNQVESEMRMIGLLYDFKDYASKMAENMARLAALLHYFSGDGGDISVTAVKAAVEIVAWYIEEYIRLFSKKEEFSLDVSEADELYCWIKDYCTQKFSSCIKKNIILQFGPNKFRNRDKANELIRILISQNKIFISSWGKTKIINITHCVF", "sequence_length": 469, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "268b7b94a9aad9aaddc76ab45c51e64256dc3180781a462fe4f1139960dc07a7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P52124.json", "taxon_id": "83333", "uniprot_accession": "P52124", "uniprot_release": "2026_03" } ], "pfam_id": "PF13148", "short_name": "DUF3987", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13149", "short_name": "Mfa_like_1", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13150", "short_name": "TraL_transposon", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13151", "short_name": "DUF3990", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus anthracis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3967-pf13152.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13152", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3967-pf13152.yaml" } ], "pfam_ids": [ "PF13152", "PF13411" ], "protein_name": "Uncharacterized protein pXO2-68/BXB0093/GBAA_pXO2_0093", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGMEIVYTANEVYSRLGVSGSTLRKYSDVLEREGYEVRKNSRGRREYTEFDVVLLQHLVELSKEDGMTLEKAAKLIVKEYGIANKKEEMKEVNPMPYHVQYQLHEQYSAMVAELNRVQQANLLEMEKRLSDRIDQRNALIEEDMSDRKEREERIEKRLERRDENLMKMIREIQEAKRIMEEVAAAKEKKLWWKFWE", "sequence_length": 197, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a98f838d91406c0feff61ffa81bcb1ddd96abcab184bc3911d6074e09b07a73c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RMW6.json", "taxon_id": "1392", "uniprot_accession": "Q9RMW6", "uniprot_release": "2026_03" } ], "pfam_id": "PF13152", "short_name": "DUF3967", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13153", "short_name": "DUF3985", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Zymomonas mobilis subsp. mobilis (strain ATCC 10988 / DSM 424 / LMG 404 / NCIMB 8938 / NRRL B-806 / ZM1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3991-pf13154.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13154", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3991-pf13154.yaml" } ], "pfam_ids": [ "PF01076", "PF13154", "PF13155" ], "protein_name": "65 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPNYAIFRFEKHKTVGTIKAASLHMTRGRETQNADPDRKELNEILKGSTDPSADVKSMLNKIQKETGKPLRKNGVQAIELFFGMSPEWSKQATPEKLEHWKTITQQWAEQTFGENNLVSLQLHADETTPHLTGFMVPRDPDTGRLNASRWFDGRKALSALQTGYAASMEPLGLARGVKGSKATHQRVQRHYGNINKTLQLDPKIQAPIPPSIFTNKEEWAEKERLKAQKSALSVIQPLADKAARYVEEKKRADRAEEALSLARRKADSMRAIPLSDVLKTLGMELDPADKKQWRDPEHRFRITIDNYKFYDHSAQKGGGGAIDLLMHTTGQDYKGALSWLADRFGDETARHDMLLNDLYRSKIRINEAKQRPAFKQPEHKNEPKIREFLNSRGISFNNIPDSIRTDDRGNVAFLMYDDKDTLQGAELRGTSSGFKGLALGSSREAHFTGSINVKNDEKYDLYIAESAIDAISVVGFLSPEKIKAGVKLLSTSGVRTSLTKTLRKIVEKASSVHIAYDWDAVGQRAASLLVGAIKAAFPTKKVENWLPPKEQMIHGKDWNDLLMVKRGLKKTVAPKQTVKRKIRF", "sequence_length": 584, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "30ddc51e2268c0f4d5b2313e39814ab87fd1d51d0ac162b881b1ae0f226cd8ff", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P15255.json", "taxon_id": "555217", "uniprot_accession": "P15255", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus anthracis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf3991-pf13154.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13154", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf3991-pf13154.yaml" } ], "pfam_ids": [ "PF13154", "PF13155" ], "protein_name": "Uncharacterized protein pXO2-78/BXB0107/GBAA_pXO2_0107", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEQQKKNIKRYTEEEIEKAASLDIVDYCMQNDIPVKPDSERYYRLTEHDSLIIDRKKNQFYWNSRGVNGNIIKFVQEVEDASFPGAMQRLLDGEQDYEKASEITFVSEPYDYEHFEQKEVSRFDRAREYLIEERKIDPQVVDALHNKGLIKQDKYNNVLFLWKDRETGAVMGGSEQGVVKSDKYKRGAWKSIQKNSTANYGFNVLNGEPRNLKFYESDIDLLSYATLHKHNLKDTHLISMEGLKPQVIFNYYMKACERIGDVPDSLSLCVDNDKAGKAFVERLIHFRYEKNDGSIVAFKPEYPQAPSEEKKWDWNDECKRVAKQQEQREQGRRAAYLQQRGMER", "sequence_length": 344, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c38cfdfc80869eae6b3eecb5a9409de42cfa5063b94ed38c30b1dd0baafbbc61", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RMV7.json", "taxon_id": "1392", "uniprot_accession": "Q9RMV7", "uniprot_release": "2026_03" } ], "pfam_id": "PF13154", "short_name": "DUF3991", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13157", "short_name": "Enas", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13158", "short_name": "DUF3993", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13159", "short_name": "DUF3994", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13160", "short_name": "DUF3995", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13161", "short_name": "DUF3996", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13162", "short_name": "DUF3997", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13163", "short_name": "DUF3999", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/diedel-pf13164.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13164", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/diedel-pf13164.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-30-70-2800-3-30-70-2800.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.70.2800", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-30-70-2800-3-30-70-2800.yaml" } ], "pfam_ids": [ "PF13164" ], "protein_name": "Protein Diedel", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASPVVSLLLVGICALAFVHVARSECCTSRELVEFKMDRGDCEAVRAIENYPNGCEVTICADGVAQLGAYCGQGSCNIFGCNCDGGCLSGDWSQEFVRRNQQYGIQIIKVTRLPF", "sequence_length": 115, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "61083af361a728bb2391683ef04a54d742d6d556cac02ee18474115013ea6ec7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VAK8.json", "taxon_id": "7227", "uniprot_accession": "Q9VAK8", "uniprot_release": "2026_03" } ], "pfam_id": "PF13164", "short_name": "Diedel", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13165", "short_name": "SCIFF", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4003-pf13170.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13170", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4003-pf13170.yaml" } ], "pfam_ids": [ "PF13170" ], "protein_name": "Uncharacterized protein YeaA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLTHDLHEKTKHYISIYAELKTKLKWKVSHDQILMLISSAYIVNKREFDFQRFYDLSSYIKSNIGSFSTLNSHHRFTVASILDIHFQHEAKQTFQTFIDVYNEMVKLGYKRDMFTYLSALILLTGKSETTNQKEQMNMGLAVYQQMKKNHYFLTSTQNVPLAVLLGENGKGLQALQKAETCYQLLAANGFKKGQYLHQVSHILALQSEKEPEMLVSACKQIYQSITESVKKTKDYHYPDLALLTFLEEPDIKTVLCITDELNQEKAFKWQKEMNFKIAVSLYLSEHMEKNLLMESGLYTAIETVIQAQQAAATAAIISSTAASHTHDGN", "sequence_length": 329, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a8709272572b20adb2663b712540a82577f000c9b72a870304a631a0825b97f5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34803.json", "taxon_id": "224308", "uniprot_accession": "O34803", "uniprot_release": "2026_03" } ], "pfam_id": "PF13170", "short_name": "DUF4003", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4004-pf13171.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13171", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4004-pf13171.yaml" } ], "pfam_ids": [ "PF13171" ], "protein_name": "Uncharacterized protein YhbD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLCFVFGLNNVTVLCYNVPIKGAGLMEEQLISKKELLERTSISYGQLYRWKRKNLIPEEWFIRKSTFTGQETFFPREEILKRISMIQKMKENLSLDEMREMLSPKMKDVSMTADELLHKGLVSRPALEAYSEDGGSPVFSSSDLLSLFVLEGLLQSGNVSLAEAKMAAEVLKKHDTEEIEKQTELIVLRKLGVTTCFIAAAADSILFESSVKVVERVDLLKASEELKTTFMQEGHQWM", "sequence_length": 238, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c9ec2c78a13c079b0ab1611742794bbd68ece87983b37b454b131d0a0e106b25", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P97032.json", "taxon_id": "224308", "uniprot_accession": "P97032", "uniprot_release": "2026_03" } ], "pfam_id": "PF13171", "short_name": "DUF4004", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4005-ipr025064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4005-ipr025064.yaml" } ], "pfam_ids": [ "PF00612", "PF13178" ], "protein_name": "Protein IQ-DOMAIN 29", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKTPSPGKWIKSLLGKKSSKSSLEKGGEKLRSAKKEELVVKVKDNNVSKLPTEPPVVSSQEVAATQTVVVPDVVIAEKQLSGDIEGDESSNVNLESGNDSEEVKLEEAATKVQAALRAQQAREESQNLKGITRVQAVIRGHLVRRQAVATYSCIWGIVKVQALVRGKKARSSETVAQLQKTNTETETSETLQGSTYSWMENPTKLSMIDKLLVSSPTTLPLKIQYSPEDPNSAKVWLGRWTQLQVWAPGPLVVKNLVPKSQTKKRSFQAVEAEKGKLKRGVRKPTGVSTTANSSTSRSTADNEKPKRTVRKASTLGKELSKIENDKSKQSSRKSTSAIKEGSSVEVKDEKPRISHKKASLSNGIGKATRKSAEKKKEIADAVQKELPIEEVSVSLVDAPEDEKMNLIPVTISKESDLDKDEKSLVLDKPEQDELRTAERDDKAEEELKTAERDDSAEEKIQEPDAQISSENGNVASENTKPSDRRASLPAKIENHHQDDGLTQSGRKIPSYMAPTASAKARIRGQGSPRIAQEKPEKNGTTRRHSLPPAANGKLSTMSPRAHRLLIASAKGSMNSDRSFSSSKDIGDKSTKAEWKR", "sequence_length": 597, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7e1aca8c15c69279093157ef7e20c50a6191d1d97af72291a15c34f57ab12b66", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A1P8B0B7.json", "taxon_id": "3702", "uniprot_accession": "A0A1P8B0B7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4005-ipr025064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4005-ipr025064.yaml" } ], "pfam_ids": [ "PF00612", "PF13178" ], "protein_name": "Protein IQ-DOMAIN 17", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKKSGSSSSWLTAVKRAFRSPTKKEHNNNAHGNEVDEDEDKKKEKRRWLFRKSTNHDSPVKTSGVGKDAPAQKSTETTTIINPTVLSSVTEQRYDASTPPATVSAASETHPPSTTKELPNLTRRTYTAREDYAAVVIQTGFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQSRVLDQRKRLSHDGSRKSAFSDTQSVLESRYLQEISDRRSMSREGSSIAEDWDDRPHTIEEVKAMLQQRRDNALRRESNNSISQAFSHQVRRTRGSYSTGDEYEEERPKWLDRWMASKPWDKRASTDQRVPPVYKTVEIDTSQPYLTRGNSRTGASPSRSQRPSSPSRTSHHYQQHNFSSATPSPAKSRPIQIRSASPRIQRDDRSAYNYTSNTPSLRSNYSFTARSGYSVCTTTTTATNAALPNYMAITESAKARIRSQSAPRQRPSTPEKERISSARKRLSFPVPPLPQQMDGQSLRSPSFKSIGGSQLGALEQQSNYSSCCTESLGGGGEISPASTSDYRRWLR", "sequence_length": 534, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ae4fc5e5bd44e40a633852b19d5166d2c010d5f9a2b670b8877946b5b3c92156", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4JHN2.json", "taxon_id": "3702", "uniprot_accession": "F4JHN2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4005-ipr025064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4005-ipr025064.yaml" } ], "pfam_ids": [ "PF00612", "PF13178" ], "protein_name": "Protein IQ-DOMAIN 28", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKTPGKWIKTLLLGKKSPKSNSDNRSQKLKSAKKEELVESVTEDLSNLTVDPPVVSSQPVPASTAQNVVSPINGDESKDNLESRNDLGEVELEQAAIKVQATFRAHQARRAFRTLKGIIRLQAVIRGHLVRRQAIATYSCIWGIVKFQALVRGQKARSSDIAIQFQKKHMEASDSEVLQSSTCSWMDNPTKFVFVDKLLASSPTALPLKIQYGPEEPNSAKVWLERWTQLQVWSSGSRVPRIEIPKSQSKKRNYQAVVEAEKKRPKRSIKKPSGTTSGTGPSRFTAERNKPKRNVRKASTLSKDPLRNESDKANHNSRKSRSGSKEGSPLEIKDEKPSPSLKRSSLSNGSKKATLRSAEKKKKDIPDSSVQIQPEGKVSENVLEGGDNIEFAEKEKDTTDSVQIESEGKVSGNVLEGGEGENIVFTEKEKDTADPVQIEPERKVLEEGDNIESSGKEKDTGDSVQIESEGKVLEGGDNIEFGEKEKDKADAVPIEFDIVKDEKSPVLDRTEEDELKTAETSDKAEALKCADVKVSSENGNVGSDNTKQSEKRALLPANIDKQDDGLTLSGRKIPSYMAPTASAKARVKGEASPRFAQAKTEINGALRRHSLPSPANGKLSTTTMSPRAQKLLLASAKGSMNGDKSFTSSKDITHKSTRTDWKR", "sequence_length": 664, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "034e008eea50385a93b03545af25a669d978c0e927eab54151f3688772ddf7e5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8GZ87.json", "taxon_id": "3702", "uniprot_accession": "Q8GZ87", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4005-ipr025064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4005-ipr025064.yaml" } ], "pfam_ids": [ "PF00612", "PF13178" ], "protein_name": "Protein IQ-DOMAIN 31", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKSTKWLKNVLLGKKTSKSSGSKDKERVVSGKEVLVTSKVEESDVVSDLPSFEVAETNTVDRSGGMLETQNVGPEEISDDEIELPEGKSTDSQNVAPVQDHSLSDAERIQREIAATSVQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFARGREIRKSDIGVQVYRKCRLQLLQGNKLANPTDAYLGIKKLTANAFAQKLLASSPKVLPVHAYDTSNPNSNLIWLENWSASCFWKPVPQPKKTISRKPQNRLLVEAESAKPKKSVRKVPASNFESSSVQTSFEFEKPKRSFRKVSSQSIEPPAVEDPQIELEKVKRSLRKVHNPVVESSIQPQRSPRKEVEKPKLGVEKTRESSYPLVHETAEEPVNVCDEKKKQEISEQPEEEVHALEMEVHTPGPLETNEALDSSLVNQIDSNEKAMVEEKPSMEKDTKEEKTPKPNNKENSAGKENQKSRKKGSATSKTEREESNGHHETSPSIPSYMQATKSAKAKLRLQGSPKSAEQDGTEKATVPRRHSLPSPGNGRITSHSPRTTRLANSGDKTGNKKEKPLLSSREGNAKTTPAERKR", "sequence_length": 587, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "614f6d2d8da4f044f5e30a319c261253db198321b936ec1fe10b50748a58b262", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8L4D8.json", "taxon_id": "3702", "uniprot_accession": "Q8L4D8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4005-ipr025064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4005-ipr025064.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4005-pf13178.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13178", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4005-pf13178.yaml" } ], "pfam_ids": [ "PF00612", "PF13178" ], "protein_name": "Protein IQ-DOMAIN 14", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVKKGSWFSAIKRVFTPHSKEKLANEPERKSGKEKKKKGFGKLRHGETNSFLPIFREPSSIEKILGEAERDHNLVFRPPTPDRPNPYSASPPPRPASPRVASPRPTSPRVASPRVPSPRAEVPRTLSPKPPSPRAEVPRSLSPKPPSPRADLPRSLSPKPFDRSKPSSASANAPPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPRPPSPRAASLRADPPRLDAARPTTPRPPSPLADAPRLDAPRPTTPKPPSPRSDPPRLDAPRPTTPKPPSPRSVSPRAVQRREIVYRPEPTLPVQHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQIQSRRIKMLENQAQVEKDEAKWAASEAGNDNWDDSVLTKEERDSRSQRKTDAIIKRERSMAYAYSRKLWKNSPKSTQDNRSFPQWWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLCPSPLSQSSKQHHIRLDNHFDTSTPRSSRSTFHTPSRPIHTGTSRYSRGRLRGQDSPFKDDDSLTSCPPFPSYMAPTVSAKAKVRPNSNPKERVMGTPVSEKRRMSYPPTQDTFRWNKGSLVMSNSSSHRGPGSPGGVVLEKHKTLKSVGNLSIGSTASMATTVGRKEFNRFV", "sequence_length": 668, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dff5ab07005d7af02844ee17cb97b2f40fdba2f668d57987915fc5acabdc5efc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LPG9.json", "taxon_id": "3702", "uniprot_accession": "Q8LPG9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/binding_site/interpro/iq-motif-ef-hand-binding-site-ipr000048.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR000048", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/binding_site/interpro/iq-motif-ef-hand-binding-site-ipr000048.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/iq-isoleucine-glutamine-motif-containing-d-iqcd-iqcd-also-called-dynei-cd23767.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd23767", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/iq-isoleucine-glutamine-motif-containing-d-iqcd-iqcd-also-called-dynei-cd23767.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4005-ipr025064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4005-ipr025064.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4005-pf13178.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13178", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4005-pf13178.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-5-190-1-20-5-190.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.5.190", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-5-190-1-20-5-190.yaml" } ], "pfam_ids": [ "PF00612", "PF13178" ], "protein_name": "Protein IQ-DOMAIN 21", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKKGSGGWFSTVKKKVFKSSPKDSKRENNIGSNNADIWQQQHDTQEVVSFEHFPAESSPEISHDVESTASTPATNVGDRKHAMAVAIATAAAAEAAVAAAQAAAKVVRLAGYNRQTEEDSAAVLIQSHYRGYLARRALRALKGLVRLQALVRGNHVRKQAQMTMKCMQALVRVQGRVRARRLQVAHDRFKKQFEEEEKRSGMEKPNKGFANLKTEREKPKKLHEVNRTSLYQTQGKEKERSEGMMKRERALAYAYTYQRQMQHTNSEEGIGLSSNGPDRNQWAWNWLDHWMSSQPYTGRQTGPGPGPGQYNPPPYPPFPTAAATTTSDDVSEKTVEMDVTTPTSLKGNIIGLIDREYIDLGSYRQGHKQRKSPTHIPSYMAPTASAKAKVRDQGPTVKLQGTSFMPYWNSSTKNGSVNGSGCDSSSSGGAITTGYPGPRSPNPKSDIRRKPVSPSQSPTGFGKRGWRHDH", "sequence_length": 471, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dcf3391f0d95e81cbf9a8cd9897241f364ff953f54ba1d4ce47e700027aeb2bb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ASW3.json", "taxon_id": "3702", "uniprot_accession": "Q9ASW3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4005-ipr025064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4005-ipr025064.yaml" } ], "pfam_ids": [ "PF00612", "PF13178" ], "protein_name": "Protein IQ-DOMAIN 32", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGRSPASSCLRLISCSGGDDTSADPNSTALENKSSGDKRGWSFRKKSGKQRGLITSVVSETTPASRTRETLESALLKSPSPDNNNVSEKQQQSFSVDEKKSQLPVVTYVAEPVDEKKTQSVIEEKTELLSVEEQIDHRTEVSPVIVESKGTETEEDDLIGTELQGPSAADAAKIEEDVTSEVEMASKVEPEESESDDVIIVRKESDEKVDEKLDESVIVVIQAAVRGFLARRELLRSKKVIKLQAAVRGHLVRSQAMGSLRCVQAIVKMQAMVRARHSTKDGSRVSATSDKSEPNAAAQKLLENKFAKHLMESTPKTKPINIKCDPTKPSSAWNWLERWMSVPKPEKTSKANLTTEEQNLEETQNVKISPQADFVNSDSTVENKTETDMPSYEASKVEGQNVELSETEKMSQYDSPEASAEVYYDSIQSQPLAAKPDSLLEEPEYVDGQIKHSLKRKVSNPSFIAAQSKFEELTSSTGSNKAMTLSSKDDVLGEEGKTDIDSPDTTNTIKDHSLEDVTPAELSGSECGTELSVTSSLDTLEKKSDAEGAEPRVEAKLLEDDTFKTDQAELIEIDVKDATSMGTVEDPKEKVENAKDEVEISATHHEPVISTPDSKKRRAEDESGPQAYALSEGALTPMTITESQATPASQASSSVKARKGKSEKSGSSQKRKVSKKITSSPKQEIGTGEATEQEEGKEQKSGRRTSFGYDQEARESSGGKNSLPRFMQPTQSAKAKVQEHNSPRSSPDLQERDVVSAKKRHSLPGVTNGKQVSPRIQRSASQAQQGTKDRKWQR", "sequence_length": 794, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c3da3e3f41cd7b4a100d3da75127fd8d96c205efc2b16d73ab9d75eff836e99", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FXI5.json", "taxon_id": "3702", "uniprot_accession": "Q9FXI5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4005-ipr025064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4005-ipr025064.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4005-pf13178.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13178", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4005-pf13178.yaml" } ], "pfam_ids": [ "PF00612", "PF13178" ], "protein_name": "Protein IQ-DOMAIN 13", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKKGSWFSAIKRVFTPHSKEKQLSNNNQEPEIKSENKEKKKKGFGKKLRNGETNSFLPIFRQPSSIEKILSEAEREHNLVFRPPTPTDRANSSSTSVASPLVRPASPKVPSQRYVSSPKPISPRVAYPQVHYPKPPSPKPPSPRAVSPRIVQRREFVHRPEPSLLVKNAYAIKIQAAFRGYMARRSFRALKGLVRLQGVVRGHSVKRQTMNAMKYMQLLVRVQTQVQSRRIQMLENRARNDKDDTKLVSSRMSDDWDDSVLTKEEKDVRLHRKIDAMIKRERSMAYAYSHQLWKNSPKSAQDIRTSGFPLWWNWVDRQKNQNQPFRLTPTRPSLSPQPQSSNQNHFRLNNSFDTSTPNSSKSTFVTPSRPIHTPQPYSSSVSRYSRGGGRATQDSPFKDDDSLTSCPPFSAPSYMAPTVSAKAKLRANSNPKERMDRTPVSTNEKRRSSFPLGSFKWNKGSLFMSNNSNNKGPGSSSSGAVVLEKHKTLKSVGNLSIDSTVSMPATIGRRAFNRFA", "sequence_length": 517, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e5a44a4be74d3f2211adbfa0d8a415a44a311cfe850dec5e1520306957783b94", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M199.json", "taxon_id": "3702", "uniprot_accession": "Q9M199", "uniprot_release": "2026_03" } ], "pfam_id": "PF13178", "short_name": "DUF4005", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13179", "short_name": "DUF4006", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13182", "short_name": "DUF4007", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/spasm-pf13186.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13186", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/spasm-pf13186.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O31423", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04055", "PF13186" ], "protein_name": "Sporulation killing factor maturation protein SkfB", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0aa93565705d46b642e47f13756956cd008540cb8d3836448ad9df49d02d05a7", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSYDRVKDFDLPELAVHLQPHGAVMIDRKSMFYFRLSGRGAQLAFLLSKNKNLHKTARIWEIMKKEEMSADQLKEELSAHPFTEAWTEGLLDQPLHVSGSLDSYLPISCTLQLTNACNLSCSFCYASSGKPYPEELSSEQWILVMQKLAAHGVADITLTGGEAKLIKGFKELVVVASSLFTNVNVFSNGLNWRDEEVELLSHLGNVSVQISIDGMDNTHDQLRGRKGGFKESMNTIKKLSEANIPVIVAMTINESNADEVSDVVEQCANAGAFIFRAGKTLSVGRATEGFKALDIDFEEMVQIQLREARHKWGDRLNIIDWEHEESSFTTDFCTPGYLAWYIRADGYVTPCQLEDLPLGHILEDSMADIGSPARLLQLKCEAKNCKCIGKIELSEPDLPFQKEVKAGIQE", "sequence_length": 410, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0aa93565705d46b642e47f13756956cd008540cb8d3836448ad9df49d02d05a7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O31423.json", "taxon_id": "224308", "uniprot_accession": "O31423", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/spasm-pf13186.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13186", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/spasm-pf13186.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P25550", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04055", "PF13186" ], "protein_name": "Anaerobic sulfatase-maturating enzyme homolog AslB", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "fadaf064c40ce7b735191df63dbf99c3a4011e8e1e5349f613511832e6b5cd70", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLQQVPTRAFHVMAKPSGSDCNLNCDYCFYLEKQSLYREKPVTHMDDDTLEAYVRHYIAASEPQNEVAFTWQGGEPTLLGLAFYRRAVALQAKYGAGRKISNSFQTNGVLLDDEWCAFLAEHHFLVGLSLDGPPEIHNQYRVTKGGRPTHKLVMRALTLLQKHHVDYNVLVCVNRTSAQQPLQVYDFLCDAGVEFIQFIPVVERLADETTARDGLKLHAPGDIQGELTEWSVRPEEFGEFLVAIFDHWIKRDVGKIFVMNIEWAFANFVGAPGAVCHHQPTCGRSVIVEHNGDVYACDHYVYPQYRLGNMHQQTIAEMIDSPQQQAFGEDKFKQLPAQCRSCNVLKACWGGCPKHRFMLDASGKPGLNYLCAGYQRYFRHLPPYLKAMADLLAHGRPASDIMHAHLLVVSK", "sequence_length": 411, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "fadaf064c40ce7b735191df63dbf99c3a4011e8e1e5349f613511832e6b5cd70", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P25550.json", "taxon_id": "83333", "uniprot_accession": "P25550", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/spasm-pf13186.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13186", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/spasm-pf13186.yaml" } ], "pfam_ids": [ "PF04055", "PF13186" ], "protein_name": "Antilisterial bacteriocin subtilosin biosynthesis protein AlbA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFIEQMFPFINESVRVHQLPEGGVLEIDYLRDNVSISDFEYLDLNKTAYELCMRMDGQKTAEQILAEQCAVYDESPEDHKDWYYDMLNMLQNKQVIQLGNRASRHTITTSGSNEFPMPLHATFELTHRCNLKCAHCYLESSPEALGTVSIEQFKKTADMLFDNGVLTCEITGGEIFVHPNANEILDYVCKKFKKVAVLTNGTLMRKESLELLKTYKQKIIVGISLDSVNSEVHDSFRGRKGSFAQTCKTIKLLSDHGIFVRVAMSVFEKNMWEIHDMAQKVRDLGAKAFSYNWVDDFGRGRDIVHPTKDAEQHRKFMEYEQHVIDEFKDLIPIIPYERKRAANCGAGWKSIVISPFGEVRPCALFPKEFSLGNIFHDSYESIFNSPLVHKLWQAQAPRFSEHCMKDKCPFSGYCGGCYLKGLNSNKYHRKNICSWAKNEQLEDVVQLI", "sequence_length": 448, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e0f84333493e35e88c64e7600993ab9da2515dace0da7179347574f22588bf2a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P71011.json", "taxon_id": "224308", "uniprot_accession": "P71011", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/spasm-pf13186.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13186", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/spasm-pf13186.yaml" } ], "pfam_ids": [ "PF04055", "PF13186" ], "protein_name": "Anaerobic sulfatase-maturating enzyme homolog YdeM", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVYFTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEWCAFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVINNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRIPAKCQQCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN", "sequence_length": 385, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "db9f831f83224bfa768066d50f09599584a7d98530181652f9906403a4410a3f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76134.json", "taxon_id": "83333", "uniprot_accession": "P76134", "uniprot_release": "2026_03" } ], "pfam_id": "PF13186", "short_name": "SPASM", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 113, "discovery_scanned": true, "example_count": 113, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycetohabitans rhizoxinica", "origins": [ { "cited_uniprot_accession": "A0A6G7BMN0", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/unclassified/endopyrrole-a.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-3749610d08", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/unclassified/endopyrrole-a.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF13193" ], "protein_name": "Endopyrrole NRPS A", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MDASITPVTYALSTAQTEIWLAQQLHPDSPVYNIAQYTVIEGAIKQAVFEAALRQVIDEADTLRLHFIDSDDGLRQRIGSPAWSMPVLDLTSEADPQAAAQAWMRTDYQQPVNLMQGPLFCYALLKVAPAQWIWYQRYHHIMMDGYGQYLIAQRVAHVYSARCAGTALAACDFGSIRQLLESDAQYQTSAQRKKDEAYWLKHCAHWPGPATLASRAAPALQQRLRQTTYLATQWVDDYVLDAGRLAQFLSAAWAAYLYRMTGAQDVVFGCPVTARLGADWHIPGMVSNTVPLRFRFEPNMDLLSLLRQAAKEIQSGLQYQRYPSEALQRQLGLAPGQSLFGIKVNVMPFDYELLFGGHSSTNHNLLAGPVDDLMLGVYWTLNSHQLRIDFDANPACYSAEALGVHQRRFIRFMQVLAADATQPIDSIDLLDADERYRLLVEGNATQRDYPSHLCIHQLFEAQVEQTPEAPALVYEDQTLSYAQLNARANRLAHQLIEWGVRPDTRVAICVQRSPALVVGLLAILKAGGAYVPLDPAYPGERLAHILTDAAPSMVLADAVGRAALGEAALAECTVLDPATLPALPDTNPSVAGLTARHLAYVIYTSGSTGTPKGVMVPHHAIARLVINNDFVDICTGDRVAFAANPAFDASTFEVWAPLLNGATVVVIDHDTVLMPAAFAHTLREQRISILWLTVGLFNQMAAQVDMAFSQLKALIVGGDVLDARWVAQVMRESPPEQLINGYGPTESTTFATIYKVTCVPERNASIPIGRPIANTRVYLLDAHSQPVPLGAVGELYIGGAGVARGYWNRPALTAERFVPDPFSEDADARLYKTGDLARYLPDGHLEFVGRNDEQVKIRGFRIELGEIAACLTAHPQVQDAVVLACGEGSDKRLVAYVRAEADEPLASTLRAQVAASLPEYMVPSAFVRVDAWPLTPNGKLDRRALPAPDDEARAHQAYEAPQGELETTLAAIWAELLGVKRVGRHDNFFALGGHSLLAVRLMNRVSGLGADVPLATLFAAPTLAAFAAALEAHLQQGTDALPEITPVSREGSLPLSFAQQRLWFLAQLDGASESYHTPLALHVRGPLDRAAWQQALDVLWARHEALRSTFVSVAGQPQVQLLPADTGVPLRWHDLRGVPNAQAQLARLRHEAAHAPFDLAQGPLIHACGMQLADDEHVMLLVQHHIVSDGWSLGVLARELSALYAASVGAQADALPPLSVQYPDYAAWQRQWLTGERLQAQSNYWRATLADAPVLLALPTDRPRSGQQSFAGAQVPMRMDAATTQALKRLSGEYGTTLFMTVLAAWSAVLARLSGQCDVVIGTPSANRHHPQIEPLIGFFVNTLALRVDLSDEPDTVELLARVRRTTLDAQAHQDLPFEQVVEIVQPPRRLNHTPLFQVMLAWQSNETGQWRLPGLDVTPAELDYDRVRFDLEMHLYEAGEEIIGALCYASALFDPATIERHVGYLTTMLQAMAAHPQQPVATLELLSPAERQLLLQTWNTTTAPYPAHPCLHQLFEAQVERSPDATALVYEEQTLSYAQLNARANRLAHRLIELGVEPDARVAICVERSPAMVVGLLAIVKAGGACVPLDPAYPSERLAHILNDAAPTIVLADATGRATLGEAALACRTVLEPEVLLDQAVPNPRVAELTPRHLAYVIYTSGSTGKPKGVMIEHVQITRLFEVTQSNGTLNEDQALIERQRGYSLTPADRVLQKTPFNFDISIWELFGTLLNGATLVVADADVHKEPVALMDLIARQRITTVYFVPSMLSIFLDTEGVQRCTSVKHLICSGEALPGATAQRCQTLLPDAQVHNLYGPTENALGTTFWTCPAACAENTIPIGRPIVNTRVYLLDTHGQPVPLGAVGELYIGGAGVARGYWNRPELTAERFVRDPFVDEPDARMYKTGDLARYLLDGHLEFVGRNDEQVKIRGFRIELGEIEACLTAHPQVRDAVVLATGEGSDKRLVAYVQAEADEPLASTLRAHVSARLPEYMVPSAFVRLDAWPLTPNGKLDRRALPAPDDEARAHQAYEAPQGELETTLAAIWAELLGVKRVGRHDSFFALGGHSLLAVRLMNRISGLGADVPLAALFATPTLAAFAAALEAHLQQGTDTLPEITPVSREGHLPLSFAQQRLWFLTQLDGVSETYHMPLALHVRGPLDRAAWQQALDVLWARHEALRSTFVSVEGQPQVRLLPADRGVPLRWHDLRGAPDAQAQLARLRHEAAHAPFDLACGPLMRACVVQLADDNYQCVLTQHHIVSDGWSLGVLTRELSALYAASMGVQADALPPLSVQYPDYAAWQRQWLTGERLQAQSNYWRATLADAPVLLELPTDRPRPAQQSFAGAQVPVQIDASTTQALKRLSAEHGTTLFMTVLAAWSAVLARLSGQHDVVIGTPSAHRNHPQIEPLIGFFVNTLALRMDLSGEPDTAELLARVRRTTLDAQAHQDLPFEQVVEIVQPPRRLNHTPLFQVMLAWQSNAPGEWRLPGLTTTPAELEYEVVKFDLELNLSEAGEEVVGRLGYATALFDHATIERHVGYLQTMLRAMVARPQQPVATLELLSPAERQLLLDTWNATQRDYPKHRCVHQLFEAQVERTPEAPALVYEAQTLSYAQLNAQANRLAHQLIELGVKPDIRVAICVERSPALVVGLLAILKAGGAYVPLDPAYPGERLAHILTDAAPSMVLADAVGRAALGEAALAECTVLDPATPSTWPDTNPSIAELTARHLAYVIYTSGSTGTPKGVMVPHYAIARLVINNGYVDIRTGDRVAFAANPAFDASTFEVWAPLLNGATVVVIDHDTVLMPAAFAHTLREQRISILWLTVGLFNQMAAQVDMAFSQLKALIVGGDVLDARWVAQVMRESPPEQLINGYGPTESTTFATIYKVTCVPERNASIPIGRPIANTRVYLLDAHSQPVPLGAVGELYIGGAGVARGYWNRPALTAERFVPDPFSEDADARLYKTGDLARYLPDGHLEFVGRNDEQVKIRGFRIELGEIAACLTAHPQVQDAVVLACGEGSDKRLVAYVRAEADEPLASTLRAQVAASLPEYMVPSAFVRVDAWPLTPNGKLDRRALPAPDDEARAHQAYEAPQGELETTLAAIWAELLGVKRVGRHDNFFALGGHSLLAVRLMNRVSGLGADVPLATLFAAPTLAAFAAALEAHLQQGTDALPEITPVSREGSLPLSFAQQRLWFLAQLDGASESYHTPLALHVRGPLDRAAWQQALDVLWARHEALRSTFVSVAGQPQVQLLPADTGVPLRWHDLRGVPNAQAQLARLRHEAAHAPFDLAQGPLIHACGMQLADDEHVMLLVQHHIVSDGWSLGVLARELSALYAASVGAQAAALPPLSVQYPDYAAWQRQWLTGERLQVQSDYWRATLADAPVLLALPTDRPRSAQQSFAGAQVPVRIDAATTQALKRLSAKHGTTLFMTVLAAWSAVLARLSGQCDVVIGTPSANRHHPQIEPLIGFFVNTLALRVDLSGGPDTVELLARVRRTMLDAQAHQDLPFEQVVEIVQPPRRLDYTPLFQVMLAWQSNETGQWRLPGLTATPAELEYDAVKCDLELNLSETGDEIAGSLGYATALFDQSTIERHVGYLQAMLQAMVAHPQQPVATLELLSPAERQLLLQTWNATQRAYPSHVCVHQLFEAQVERTPEAPALVYEDQTLSYAQLNARANRLAHQLIELGVKPDTRVAICVQRSAALVVGVLAILKAGGAYVPLDPSYPSERLAHILADAAPSMVLADAAGRAALGEAALAECTVLDPATPSTWPDTNPSIAELTARHLAYVIYTSGSTGTPKGVMVPHYAIARLVINNGYVDIRTDDRVAFAANPAFDASTFEVWAPLLNGATVVVIDHDTVLMPRAFAHTLREQRISILWLTVGLFNQMAAQVDTAFSQLKALIVGGDVLDARLVAQVMGESPPEQLINGYGPTESTTFATIYKVTCVPERNASIPIGRPIANTRVYLLDAHGQPVPLGAVGELYIGGAGVARGYWNRPELTAERFVRDPFSEDADARLYKTGDVARYLPDGNLEFVGRNDDQVKIRGFRIELGEIAACLTAHPQVRDAVVLACGEGSDKRLVAYVQAEADEQLASTLRAQVAASLPEYMVPSAFVRVDAWPLTPNGKLDRRALPAPDEAALAHQAYEVPQGELETTLAAIWAELLGVKQVGRHDSFFALGGHSLLAVRLIERLRRRGLSVSVRALFEAPTLSALAQSLGQRRDVAVPANAITPDTTVITPSMLPLIELTQADIDKIVKQVPQGVANIQDIYALSPLQDGLLFHHLLARDGDPYLLMVQLAFDSHERLDQYLHALQQVIDRHDILRTAFVWEGVSTPAQVVWRHAQLPVTELTLDPADEPIVAQLARRFDPRHTRLDLTQAPLLHCAIAQDRAGRWLLTQRLHHLIGDHSTLEVMHAEVRAFIEGRGDTLSPAQPFRHLVAQARLGVSQAEHEHFFTELLADVEPTLPFGLAQIQHDGSEVSESHRMLPSALNDRLRTHARRLGVSLASLCHLAWAQVLARASGQPRVVFGTVLFGRMQAGEGADSAMGLFINTLPLRVDLSGNVQAAVHATHARLAALLEHEHASLALAQRCSGVPADTPLFSALLNYRHNAMGSDERSGLPGVELLSAQERTNYPLTLSVEDFGQALELTAQSVPPLAPERVCGYMQQALHSLADALEAAPDTAVQQLQVLPEAERQLLLQTWNATQRAYPSHVCVHQLFEAQVERTPEAPALVFEDQTFSYAELNAQANRLAHQLIELGVKPDTRVAICVQRSAALVVGLLAILKAGGAYVPLDPAYPGERLAYILADAAPSMVLADAAGRAALGEAALAECTVLDPATLPALPDTNPSVAGLTARHLAYVIYTSGSTGTPKGVMVEHVQVARLFEATQPWYGFNEHDTWCLFHSFAFDFSVWELWGALRYGGKLVIVPHPIARSADAFYQLICEQGVTVLNQTPSAFKALMVSQAHSALTDQLRYVIFGGEALEPTSLQAWYATHDERYPQLINMYGITEVTVHVTYRPLRQQDSEQAGSLIGTRIPDLTIYLLDAHGQPVPLGAVGELYIGGAGVARGYWNRPALTAERFVPDPFSEDADARLYKTGDLARYLLDGHLEFVGRNDEQVKIRGFRIELGEIEACLTAHPQVRDAVVLATGEGSDKRLVAYVQAEADEPLASTLRGMFRPACPSIWCPVRLCGWTRGR", "sequence_length": 5199, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "33739cdb465538a39eb43db9a96d68ce418373c1ea450894082365b015d0db43", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A6G7BMN0.json", "taxon_id": "412963", "uniprot_accession": "A0A6G7BMN0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio neptunius", "origins": [ { "cited_uniprot_accession": "A0ABS3A5Z7", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/piscibactin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-81da63fd62", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/piscibactin.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "AMP-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MTSRKAMEPVIPHSTEKQQTYQQAGLWEQVPLWQLLWSHSANTLDQIAIRDDSKSMTYRELINEADQIAQGLISQGWAAGDRVVMQLSNRCEFAATLFGFLRAGLIPVMALPAHGLAEIEHFMRTCNAQGYVGEGNIGEKIVNNLKKQGDLKLYLIDQCTPTCALPHSEANGFAPADVDPAETALFLVSGGTTGLPKLIPRTHNDYLYNIRCCCRASEVAETEVYLAVLPAAHNFTLGCPGFLGTLSVGGEVIFTQLASPDHCFELIEQYSVTATALVPALAQLWTEAVQWEEANLTSLKRIQVGGSKLAYSDAIAMQHVFPGVLQQVFGMAEGLIACTRLNDTPEVVASMQGKPVSEWDEVRIVDSDGKDVELGEEGELLTRGPYTLRGYYRAAEHNARSFTEDGFYCSGDKVRMNDQQYLSVTGRIKDVVNRAGECIAADEIEEQLLAHPDIAQVAVVAVPDPHLGERIGVAAIGRDTSLTLQDLRRFLLEQNLATFKMPDELLWVSTLPKTAVGKVDKKAIVGPSGTPWHLG", "sequence_length": 535, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "28213091d24690c1a50aa23458260ee51de246c9afae7dad116f47cb1b06bc95", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0ABS3A5Z7.json", "taxon_id": "170651", "uniprot_accession": "A0ABS3A5Z7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio neptunius", "origins": [ { "cited_uniprot_accession": "A0ABS3A787", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/piscibactin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-81da63fd62", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/piscibactin.yaml" } ], "pfam_ids": [ "PF00109", "PF00501", "PF00550", "PF00668", "PF00698", "PF00975", "PF02801", "PF08242", "PF08659", "PF13193", "PF16197", "PF22953" ], "protein_name": "Amino acid adenylation domain-containing protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MDNNHLYDNCDPIAVIGMACRFPKAPNIDAFWHNLTNGISGQSFFSIQELQAAGVNAEVCNREHFVPSGAVIDKPEYFDAALFGYSPAEATSIDPQQRLFLQNVWHALEHAGYAPTQAPSRTGVFGSIRTSTYPSFEAFDVTQVGQVKGLQALLGNDKDYLATRVAHKFNFTGPAFTVQTACSSSLVAAHLACESLRSGECDMAIAGGVAVSFPQISGYEYQPGMIFSPDGLCRPFDQQANGTFGGHGVGSVVLKRLDDAIEAGDTVLAVLRGSAINNDGQDKVGFTAPSVNGQSQVLAEALHLADVQPDEVEMIETHGTGTKLGDPIEVTAIKNAYSRSSGAPVCHLGSVKSGLGHLDTAAGIASLIKTVLSVSRKKIPMSLNIAQPNPELGLNGSSFDLATQTLDWQSPVRNAAVSSFGIGGTNCHMLVQSSSQPNQTSQPTRAEDKDIPLFLSANSPKSLGDIARRYSEHLEQHPNCADIAYSALSTRSLDLPYRLAVLNANQAKPALRAFAESGEASHQIRIGHVQSRTKLAWTFTGQGSQFEGMGETWYQTSEAFRHSIDLSQSYTKGKLEVPLTEIMFGSERKWLSRTDGAQVAIVAFELALAAYWTSKGMTPDVVLGHSVGEISACVIAGYLSHQQAIELVIERGQRMQQCTQNQHGAMLAAFAPLEQLNTISSLAELDQAAHNGAAHWVFSGDIEKVEQASKELEAADITYHQLDVPCAAHSRHLDSMLSSYANFTQHLTPTQGEITLISSVTGQAIRSLSELNADYWTRHVRETVQFQPAIEQALALDCHTFMEIGPKPHLTSIGRRESWSLKSCWLHAADENVLSELFILGIDAPWKEMLDIAGRRCELPLYAFDEQQYWVDSRQDKKPQPLITPEPVATYPLEPLTLRCAVINDFLRTCTSRKSFSLIDIIRGGRILPRHRDHIKALLDLLLSQGYYHKQGKQWVSSESGLPNADIIAQHWRSETEGHHLASVQRTCTQLLALGQSLPELMRQLEHAENLSKHLAPLLDGDSATSVSPSHDADLAWQNTLSSLTYQDWSPVAEHGDLRTAIKHQCSTFLPCGCKDVDLSVSAKIGLNNVSRVAINRLSKMWGQDIYHLRAQAPQGHWEWLARIEPQATKKDDPAELLPSPHNRYHWQARPIEADQPLNPITVEQVASAFNERGTVHRTAADQGILVLPSTPLSETSTLLAQGLSNSPDNLWILTCDAMKATPNDTTEPTATALLSLIRVARTEYPNKRFCVLDTSENDAEEVTQVLAHAPFVSASELAYRDNQYWAYQLEHAPTNDNSIPASWFNAEGSHLVTGAMGGIGRLVIRWLASCGVKRVIAIGHHQHSDWSAFCAQMAMFGCQIETHLVDLTLKGELTKLLNQLADNRPVAGAIHAAGNPHHGLIDQWDSLTAEQVIRVKAETFETLYQWLEARQAGYLIGFSSVATLGAPTQGLYAVANAFIDGFAQSHHANGHCRVMSLAWGAWDHVGMTRDAALVAKLGEEGMHTLTPAEGLWHLSQSLLMGTKHAFAMNISSNSPQFSQHFTLESSERASADCASLVVDTLATSTWLEDRIRYQLGLAENDLLEPQQDLMQLGLDSLQFLELNAAIQKQFNVKLTAEEAYQAMTIHGLEALIDSKSHHAEPQQSLPFVIQPDQRHLPFPLTPIQHAYWVGREFWVPYGGIACNVVFEWDLSHSQFDIQRLEAAWNALIQRHDMLRMSVLPTGEQVILEEVPNYTFSTQDLSRLDNNAKTQALAETRQTMSQQVRPATQWPLFDVRISSLSEHQYRLHMNLDLLQFDVQSFKIMMDDLGRAYHGEHLPPLSLSFRDYVVHEQALKNQPDWQTSWNYWLDLLPSIPKAPQLPLGNVANSYKPEFVTRKGSLPKSQWSNLKSHWQQAGITPSAGLLTLFSRILAKWSESRAFTLNMTFFNRQPFDQNVQDLIGDFTSVLLMDFDWSQDLNLKEQLSRTQEKLWTRLSHSQVNGVEVMRELAKYRKAEQQMTEQEASLPMTPVVFTSMLGMSMDGMDIEKAMTHLLGDPVYVLSQTPQVWLDHQIMEVDGELKYHWYCMNGVIAPDVLDDMFTQYGQWLCQMAEAPREFERTTLVSKSAPTPYKTTLPEITSAIESEVTNAWSYIEHKALTGLLTTLRRHQIFHQRDQLFSYSQIIQVLRTAPKHHKLVQLWLDQLVREGLLHFDNGLYQWQGHEPTAPDCELPQSEWCQRLSQYLDESLQAHPELLSDQKSALEILFKDNQITDALYRTNPSLKILNQSAANLISALGEKKGTPLKILEVGAGTAATSTAVLGQAARYIEHYRFTDVSQAFLNEAKQSLAQYNQVDFGWLDINLALEPEMRVTGGYDVIIAVNVLHDAADLPATLKQLKGALATNGHMLLIEATDQYSPMQLATVGFIEGINAFSDFRQHTGSAMLSAYDWQQVLGEQGLVTERRFPDSEQSVLRQHLFLARATQNDSPEALPCAYSPKDKNKAQEVIVESQSVPTQDALMSRIAEIWTLLLGQSVTPQTDFFLCGGDSLMATKMIVEINKQEIAHASLQQIFEHSKLEQFVQVLNGTLDQQAGNEELEISSEEHEVQQIWQALLSQDITSETDFFQCGGDSLMATKLIVQLQQAGFKAVTLQHIFEQPVFAQFCKHLFKPDAEVTVNAQKANRDYPLTPLQNAYWLGESSLFSLGQGIAHFYAELEIKDLNRARLVDGWNTMVHHHDQLRGEIREGHYCILQEVPHYEPDYVDLTQYAESDKAQYLTEAREHIAAQGIPTDRWPLFDLTIIKTNEDTHLLHLVIDLVVADGTSLNLLFQQWQQLYNDSSATLNKPSMTIAQYLEQKAERHANGSQHASRQYWIERLPTLPDAPALPLADSRAESMNQCVLTHRVSEKDWNQLQRQSLGHNVLPSMAMLATFCLVLRRWSDTHHFSLNVLHSNRPASEPDIANVVGNLSTTSMLEVDISKEPTLLALIQQVQQQMSDDLAHAEFDGQDVLTEKNRLNRNFSAGMPVVFNDTVSVGQQSSLTLGTLRDFGAQTPHVYLDAMLISSVCGGIDIKWTVQQDHLKPGVFDAMFHAYTKAVESLTTSDWHKPLCVSLSESQWGHQSNSSKASLTEQLSASKPQSLLEMIKQGYEAYPERIAIQQGETLLTYREIWNAALGLASSIAANDDDAPLVAIVMNKSWQQVVAAIGILMAGKAYLPIDAAYPEARIHTLLEQGQVTTVVAEKGLKVALDTYRVLTPSVSHTQHNEFQPKMVGPSDLAYVIFTSGSTGQPKGVMMDHQAVVNTLLDVESRLSLDCEDRVLAISSLNFDLSVFDVFSTLHCGACLVIPESSPAKDPDALIELAIKAQITIWNSVPAFAQLLADGLTSRSSVLPSLRHIMMSGDWIPVSLPEQLKVIAPNTKLLSLGGATEAAIWSIAYPIEGSHAERKSIPYGKALTNQAFFVLDSQLQPCPNWVSGELYIGGSGLSLGYWQDESKTQAAFITHPESGQRLYKTGDLGRYQDDGNIEFLGRNDHQVKINGYRIELGEVESTLRLCPNAGLKERLQNIIVQPIAIEGVGTRLVAYTVCTQPEPQDATHLLDHARNNLPTYMCPVQIVSLDTIPLTSNGKVDRKALPTPVVEINANSRPPMTETEEQIAQIWRDCLQQAAIPANQSFFDFGGNSLAAVRVISRINSQLGSQLTAGHLQSHDTIERLASLIDRRTTYESSEPVLLNPTKEAKPPLFIVHPIGGHLLSYQPLAQQLDHVSLYGLAYPDTGFKQNEFDVTQLAQHYLNQIKRIQPHGPYRLAGWSFGGIVAYEMAHQLVESKQKVDACILIDSYRPILQKETMSAQEVRRHFYADVIGRFPQLMQVEEPDLSTDDSLCGHLSSAFGHIAAIEDVTKDSVQHLLDVYRRNLAAMLSYTVPELTSVNTALIAAGRNNHLDFMSYQDPIIAQSPHHGWGDVCDLTVHELDGDHYTLLQEPNVSELANTLVSLLDRTLKRAQGSQSSTMEILENE", "sequence_length": 3992, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a1008e48199717b210046f7f578c3034ee81ff2363ef2b12c75d327c833213cb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0ABS3A787.json", "taxon_id": "170651", "uniprot_accession": "A0ABS3A787", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181)", "origins": [ { "cited_uniprot_accession": "A1DN09", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/unclassified/acetylaszonalenin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-fd260f24d4", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/unclassified/acetylaszonalenin.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF13193" ], "protein_name": "Nonribosomal peptide synthetase anaPS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTITTMTPQNGTRRQVDGGPICFFPTMTRLDMQSITFDNHVVQKLTSFPNASDAGVHLLLAGLWALTLRQYAEVDTARFEVSTSILASGKGSGATKHVFSIALSPSDPVSTLFDVRNWDIRFVDQKHSDSFNTGVFVVENQNGRCLLDVEYHDINLLLQSNRTSAELSLVYRSSAIAGTYARHLADGIAQAIISISENPNQSIGAVDFCCSLQKAQVVTWQNAKIIQPDRSFLFEYISRNATVHGDTLAIDSWDGQFTYAELDGLSTVMATRFQERGIGPGDLVPMCFGKTRWAIAAMLAINKTGAGFVPLDPAYPQSRLETIIQKTQARVALASPTTESILRPLGLPLLVISDSILGCCLPHSKRYTAPNSGVAPAYCFFTSGSTGDPKGCEVSHLAFASIATHARSLCLSQQSRSLQFASFCFGASLLEIWCTLIVGGTLCIPSDHDRLNSLGEFMAKMRINWAFITPTVLASISPDNFNNLHLFIAGEPIGERDIRTWAPRARLFQAYGLTEWAGVFAVSRQIRTPEDRKSIGSPVNARAWIVDPLDHQKLAPIGAVGELVIEGPSLAQGYRGDPQRTAAVFLQRPPWLTLPALSKDGSSSRVYKTGDLVRYAEDGSLVYVRRKDNQVKIHGQRLEIGEVEYHVRQLFPQAKMVIVMVHEPSDAASHQRNLVALTLHPPNNGHTGFSHGKLEFMEVDQEYQSKVEHVRNGLRSRLPAFMIPQLFLPLSQIPTTITGKADRRSLCRDVNKLSYAQLHGLTTQMVSTRAAQGKGEEAIHAAVCDVLGLAPEHLGMNDNFFHLGGNSASAMKLTMSARRRGLRFTIRDVFNHPVLAELASAANLSNGCERPVVQTMELLEPESVSELKQLAVSQCRIDEDIIEDIYPSTALQEGLVAITARDPSLCKARVICKLRSNVRIDALKAAWECVVQLNDILRTRFILSASHGTFQVVCKEPFSWARAQNLEDCIQQSDALVHRVGDDLVHAYIIPDEKDRDSASTFVFVAHHALCDQWSIRLLLDQLTAAYGHSKLPSNRFSAFIRYLTKTRSHFKNYWINQFQGLEAVAFPPLPSPSYTPVASEKFDFVMKLLGNTTKQITTATYIKLAWAVVISCNTGSNDTVFGVTVNGRGAPIDGVGELTGPTIATIPQRIKLLPDQSATSALAEIQSHSLEVIPYEQAGLQNIQKYSPEARSACMFQSQLIIQPCPPSPPDLFEACDFSATQTGGFSAYGLSLECQMTYDDRHCEVTATFDPGMISRERVQRLLQHLELVLQDVMADPSRKVGDLPRMSRQDWDQIQRWSGTLPPVSRQCVHDAVDERYLEYPNACAVSAPDGDLSYAELIHSANAVAAELLAHGVEPGKYIPVLFEKCKWSPVAMLGVLKAGAAFVLLDPSYPPQRLHAICGGLKSQIILCSKGLSARAASLGPTAIAVHENATFLVDIPNATLPVVSPEDPAYVVFTSGSTGTPKGAIIDHQSYCSSALAHNRAHFLGRNSRVLQYASYAFDVSIMETLSTLMAGGCVCILSDLERHDHFADSVQRLAVTHAFLTPSTARLLMQRELPSLCVLVMGGEVMSLADRSYWMKRVRLMNEYGIAECSVASTIREVSDVEQRDIGFPMGVLAWVVDQNDHEKLVAIGAIGELLLEGPSVGRGYLDNPEATRRAFIEQPGWLRAVRGGKTSRVYKTGDLVQYNEDGSLSFIGRKDSQIKIRGQRFELEEVEQHLRRIDEIKEVTAVAVAPSDRQKQAYLVAFIVPRTRESFCVHSAKALVTHPTEEFRHLAAAIQSKLHSILPAHMVPSIYLPVNQMPKTSSDKVDRCRLKEEVGKWSWSDLQAYSVSSTSRRAPSNSVEQDLQRVWAQILGIRLDSIGVEDSFFHLGGDSIIAMQVVAEARSRGLDHSVQDINQLKSIKAIANKIGVVSTIAQPVVQDQVTDELFGLTPIQEFFFEKYPEGTCRFNQNILVHFQKPVADIDVERAANKLVQNHAILRARYARQKDGSWKQFFTGYTEQCFRFSMHKVNSVQEMRHIIGQSQTSLDPEHGPVFTVDLFDHNGQQSLFMIGHHLVLDLVSWRIILADMEAMILDPQHQPHLTMSFQTWARLQAEYGTRHLEPPPVQQLCSIDEPSMRKFWGAENNANTGGDSKTRLIRVNEQLTNKLFGPSSQALDVEPVELLHAAILFSFVNTFPQRPAPCIFGEAHGRETWDSSIDVTRTIGWFTTLWPVVAQVNPSDSLETVVRTVRQARRAMDMHGWKHFTSIYHNTQQTKCSAGTHLMEITFNYAGKFQQVEQDGALFRMEPMAKQNLFDGAAELGRWAMLEINSVILNGMLEFHVTYNRGTDEASVLTPWMDNLVKCLEDLASGFA", "sequence_length": 2359, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "726fcb5c82cfb36457d6a979c8651c88dbd8bc4e7efb7dd0195214a330a46df7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1DN09.json", "taxon_id": "331117", "uniprot_accession": "A1DN09", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Metallosphaera sedula (strain ATCC 51363 / DSM 5348 / JCM 9185 / NBRC 15509 / TH2)", "origins": [ { "cited_uniprot_accession": "A4YDR9", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/hydroxypropionate-hydroxybutyrate-cycle.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY-5789", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/hydroxypropionate-hydroxybutyrate-cycle.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "4-hydroxybutyrate--CoA ligase 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGGFKIPNYEGVDPTGSWYSVLTPLLFLERAGKYFKDKTAVVYRDSRYTYSTFYDNVMVQASALMRRGFSREDKLSFISRNRPEFLESFFGVPYAGGVLVPINFRLSPKEMAYIINHSDSKFVVVDEPYLNSLLEVKDQIKAEIILLEDPDNPSASETARKEVRMTYRELVKGGSRDPLPIPAKEEYSMITLYYTSGTTGLPKGVMHHHRGAFLNAMAEVLEHQMDLNSVYLWTLPMFHAASWGFSWATVAVGATNVCLDKVDYPLIYRLVEKERVTHMCAAPTVYVNLADYMKRNNLKFSNRVHMLVAGAAPAPATLKAMQEIGGYMCHVYGLTETYGPHSICEWRREWDSLPLEEQAKLKARQGIPYVSFEMDVFDANGKPVPWDGKTIGEVVMRGHNVALGYYKNPEKTAESFRDGWFHSGDAAVVHPDGYIEIVDRFKDLINTGGEKVSSILVEKTLMEIPGVKAVAVYGTPDEKWGEVVTARIELQEGVKLTEEEVIKFCKERLAHFECPKIVEFGPIPMTATGKMQKYVLRNEAKAKANKEKS", "sequence_length": 549, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b55e1fd1c27fd8a7f6b10c45d9e33d0052c6e1ae96fa033c28cc2f3bc21d88d8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4YDR9.json", "taxon_id": "399549", "uniprot_accession": "A4YDR9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Metallosphaera sedula (strain ATCC 51363 / DSM 5348 / JCM 9185 / NBRC 15509 / TH2)", "origins": [ { "cited_uniprot_accession": "A4YDT1", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/hydroxypropionate-hydroxybutyrate-cycle.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY-5789", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/hydroxypropionate-hydroxybutyrate-cycle.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "4-hydroxybutyrate--CoA ligase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVTVQDFFRKFIEFQNSPNEKSLQEIVKLVGQLDLRRFNWVRDVFEDIHVKERGSKTALIWRDINTGEEAKLSYHELSLMSNRVLSTLRKHGLKKGDVVYLMTKVHPMHWAVFLAVIKGGFVMVPSATNLTVAEMKYRFSDLKPSAIISDSLRASVMEEALGSLKVEKFLIDGKRETWNSLEDESSNAEPEDTRGEDVIINYFTSGTTGMPKRVIHTAVSYPVGSITTASIVGVRESDLHLNLSATGWAKFAWSSFFSPLLVGATVVGINYEGKLDTRRYLGEVENLGVTSFCAPPTAWRQFITLDLDQFRFERLRSVVSAGEPLNPEVIKIWKDKFNLTIRDFYGQTETTAMVGNFPFLKVKPGSMGKPHPLYDIRLLDDEGKEITKPYEVGHITVKLNPRPIGLFLGYSDEKKNMESFREGYYYTGDKAYFDEEGYFYFVGRGDDVIKTSDYRVGPFEVESALLEHPAVAEAAVVGVPDTVRWQLVKAYIVLKKGYMPSKELAEEIREKMKTLLSPYKVPRIIEFVDELPKTISGKIRRVELRKREEEKRKKGEVGQNEYVF", "sequence_length": 564, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5dcdc4824477ccc176a4e9281925a64774d773c7dfd6b187574bcffcc8acc86a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4YDT1.json", "taxon_id": "399549", "uniprot_accession": "A4YDT1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Metallosphaera sedula (strain ATCC 51363 / DSM 5348 / JCM 9185 / NBRC 15509 / TH2)", "origins": [ { "cited_uniprot_accession": "A4YGR1", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/hydroxypropionate-hydroxybutyrate-cycle.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY-5789", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/hydroxypropionate-hydroxybutyrate-cycle.yaml" } ], "pfam_ids": [ "PF00501", "PF13193", "PF16177" ], "protein_name": "3-hydroxypropionyl-coenzyme A synthetase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFMRYIMVEEQTLKTGSQELEEKADYNMRYYAHLMKLSKEKPAEFWGSLAQDLLDWYEPWKETMRQEDPMTRWFIGGKINASYNAVDRHLNGPRKFKAAVIWESELGERKIVTYQDMFYEVNRWANALRSLGVGKGDRVTIYMPLTPEGIAAMLASARIGAIHSVIFAGFGSQAIADRVEDAKAKVVITADAYPRRGKVVELKKTVDEALNSLGERSPVQHVLVYRRMKTDVNMKEGRDVFFDEVGKYRYVEPERMDSNDPLFILYTSGTTGKPKGIMHSTGGYLTGTAVMLLWSYGLSQENDVLFNTSDIGWIVGHSYITYSPLIMGRTVVIYESAPDYPYPDKWAEIIERYRATTFGTSATALRYFMKYGDEYVKNHDLSSIRIIVTNGEVLNYSPWKWGLEVLGGGKVFMSHQWWQTETGAPNLGYLPGIIYMPMKSGPASGFPLPGNFVEVLDENGNPSAPRVRGYLVMRPPFPPNMMMGMWNDNGERLKKTYFSKFGSLYYPGDFAMVDEDGYIWVLGRADETLKIAAHRIGAGEVESAITSHPSVAEAAVIGVPDSVKGEEVHAFVVLKQGYAPSSELAKDIQSHVRKVMGPIVSPQIHFVDKLPKTRSGKVMRRVIKAVMMGSSAGDLTTIEDEASMDEIKKAVEELKKELKTS", "sequence_length": 661, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f9b43589111967828e4f2f780d1a73a7ed52c4a919bf6f326c75322d78127a49", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4YGR1.json", "taxon_id": "399549", "uniprot_accession": "A4YGR1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Penicillium chrysogenum", "origins": [ { "cited_uniprot_accession": "A6N339", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/n-5s-5-ammonio-5-carboxylatopentanoyl-l-cysteinyl-d-valinate.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:58572", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/n-5s-5-ammonio-5-carboxylatopentanoyl-l-cysteinyl-d-valinate.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF00975", "PF13193" ], "protein_name": "N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MTQLKPPNGTTPIGFSATTSLNASGSSSVKNGTIKPSNGIFKPSTRDTMDPCSGNAADGSIRVRFRGGIERWKECVNQVPERCDLSGLTTDSTRYQLASTGFGDASAAYQERLMTVPVDVHAALQELCLERRVSVGSVINFSVHQMLKGFGNGTHTITASLHREQNLQNSSPSWVVSPTIVTHENRDGWSVAQAVESIEAARGSEKESVTAIDSASSLVKMGLFDLLVSFVDADDARIPCFDFPLAVIVRECDANLSLTLRFSDCLFNEETICNFTDALNILLAEAVIGRVTPVADIELLSAEQKQQLEEWNNTDGEYPSSKRLHHLIEEVVERHEDKIAVVCDERELTYGELNAQGNSLARYLRSIGILPEQLVALFLDKSEKLIVTILGVWKSGAAYVPIDPTYPDERVRFVLDDTKARAIIASNQHVERLQREVIGDRNLCIIRLEPLLASLAQDSSKFPAHNLDDLPLTSQQLAYVTYTSGTTGFPKGIFKQHTNVVNSITDLSARYGVAGQHHEAILLFSACVFEPFVRQTLMALVNGHLLAVINDVEKYDADTLLPFIRRHSITYLNGTASVLQEYDFSDCPSLNRIILVGENLTEARYLALRQRFKNRILNEYGFTESAFVTALKIFDPESTRKDTSLGRPVRNVKCYILNPSLKRVPIGATGELHIGGLGISKGYLNRPELTPHRFIPNPFQTDCEKQLGINSLMYKTGDLARWLPNGEVEYLGRADFQIKLRGIRIEPGEIETMLAMYPRVRTSLVVSKKLRNGPEETTNEHLVGYYVCDSASVSEADLLSFLEKKLPRYMIPTRLVQLSQIPVNVNGKADLRALPAVDISNSTEVRSDLRGDTEIALGEIWADVLGARQRSVSRNDNFFRLGGHSITCIQLIARIRQRQRLSVSISVEDVFATRTLERMADLLQNKQQEKCDKPHEAPTELLEENAATDNIYLANSLQQGFVYHYLKSMEQSDAYVMQSVLRYNTTLSPDLFQRAWKHAQQSFPALRLRFSWEKEVFQLLDQDPPLDWRFLYFTDVAAGAVEDRKLEDLRRQDLTERFKLDVGRLFRVYLIKHSENRFTCLFSCHHAILDGWSLPLLFEKVHETYLQLLHGDNLTSSMDDPYTRTQRYLHAHREDHLDFWAGVVQKINERCDMNALLNERSRYKVQLADYDQVQEQRQLTIALSGDAWLADLRQTCSAQGITLHSILQFVWHAVLHAYGGGTHTITGTTISGRNLPILGIERAVGPYINTLPLVLDHSTFKDKTIMEAIEDVQAKVNVMNSRGNVELGRLHKTDLKHGLFDSLFVLENYPNLDKSRTLEHQTELGYSIEGGTEKLNYPLAVIAREVETTGGFTVSICYASELFEEVMISELLHMVQDTLMQVARGLNEPVGSLEYLSSIQLEQLAAWNATEAEFPDTTLHEMFENEASQKPDKIAVVYEETSLTYRELNERANRMAHQLRSDVSPNPNEVIALVMDKSEHMIVNILAVWKSGGAYVPIDPGYPNDRIQYILEDTQALAVIADSCYLPRIKGMAASGTLLYPSVLPANPDSKWSVSNPSPLSRSTDLAYIIYTSGTTGRPKGVTVEHHGVVNLQVSLSKVFGLRDTDDEVILSFSNYVFDHFVEQMTDAILNGQTLLVLNDGMRGDKERLYRYIEKNRVTYLSGTPSVVSMYEFSRFKDHLRRVDCVGEAFSEPVFDKIRETFHGLVINGYGPTEVSITTHKRLYPFPERRMDKSIGQQVHNSTSYVLNEDMKRTPIGAVGELYLGGEGVVRGYHNRADVTAERFIPNPFQSEEDKREGRNSRLYKTGDLVRWIPGSSGEVEYLGRNDFQVKIRGLRIEVGEIEAILSSYHGIKQSVVIAKDCREGAQKFLVGYYVADAALPSAAIRRFMQSRLPGYMVPSRLILVSKFPVTPSGKLDTKALPPAEEESEIDVVPPRSEIERSLCDIWAELLEMHPEEIGIYSDFFSLGGDSLKSTKLSFMIHESFNRAVSVSALFCHRTVEAQTHLILNDAADVHEITPIDCNDTQMIPVSRAQERLLFIHEFENGSNAYNIDAAFELPGSVDASLLEQALRGNLARHEALRTLLVKDHATGIYLQKVLSPDEAQGMFSVNVDTAKQVERLDQEIASLSQHVFRLDDELPWEARILKLESGGLYLILAFHHTCFDAWSLKVFEQELRALYAALQKTKSAANLPALKAQYKEYALYHRRQLSGDRMRNLSDFWLRKLIGLEPLQLITDRPRPVQFKYDGDDLSIELSKKETENLRGVAKRCKSSLYVVLVSVYCVMLASYANQSDVSVGIPVSHRTHPQFQSVIGFFVNLVVLRVDISQSAICGLIRRVMKELVDAQLHQDMPFQEVTKLLQVDNDPSRHPLVQNVFNFESRANGEHDARSEDEGSLAFNQYRPVQPVDSVAKFDLNATVTELESGLRVNFNYATSLFNKSTIQGFLHTYEYLLRQLSELSAEGINEDTQLSLVRPTENGDLHLPLAQSPLATTAEEQKVASLNQAFEREAFLAAEKIAVVQGDRALSYADLNGQANQLARYIQSVSCIGADDGIALMLEKSIDTIICILAIWKAGAAYVPLDPTYPPGRVQLILEEIKAKAVLVHSSHASKCERHGAKVIAVDSPAIETAVSQQSAADLPTIASLGNLAYIIFTSGTSGKPKGVLVEQKAVLLLRDALRERYFGRDCTKHHGVLFLSNYVFDFSVEQLVLSVLSGHKLIVPPAEFVADDEFYRMASTHGLSYLSGTPSLLQKIDLARLDHLQVVTAAGEELHATQYEKMRRRFNGPIYNAYGVTETTVYNIIAEFTTNSIFENALREVLPGTRAYVLNAALQPVPFDAVGELYLAGDTVTRGYLNQPLLTDQRFIPNPFCKEEDIAMGRFARLYKTGDLVRSRFNRQQQPQLEYLGRGDLQIKMRGYRIEISEVQNVLTSSPGVREGAVVAKYENNDTYSRTAHSLVGYYTTDNETVSEADILTFMKARLPTYMVPSHLCCLEGALPVTINGKLDVRRLPEIINDSAQSSYSPPRNIIEAKMCRLWESALGMERCGIDDDLFKLGGDSITSLHLVAQIHNQVGCKITVRDIFEHRTARALHDHVFMKDSDRSNVTQFRTEQGPVIGEAPLLPIQDWFLSKALQHPMYWNHTFYVRTPELDVDSLSAAVRDLQQYHDVFRMRLKREEVGFVQSFAEDFSPAQLRVLNVKDVDGSAAVNEILDGWQSGFNLENGPIGSIGYLHGYEDRSARVWFSVHHMAIDTVSWQILVRDLQTLYRNGSLGSKGSSFRQWAEAIQNYKASDSERNHWNKLVMETASSISALPTSTGSRVRLSRSLSPEKTASLIQGGIDRQDVSVYDSLLTSVGLALQHIAPTGPSMVTIEGHGREEVDQTLDVSRTMGWFTTMYPFEIPRLSTENIVQGVVAVSERFRQVPARGVGYGTLYGYTQHPLPQVTVNYLGQLARKQSKPKEWVLAVGDNEFEYGLMTSPEDKDRSSSAVDVTAVCIDGTMIIDVDSAWSLEESEQFISSIEEGLNKILDGRASQQTSRFPDVPQPAETYTPYFEYLEPPRQGPTLFLLPPGEGGAESYFNNIVKRLRQTNMVVFNNYYLHSKRLRTFEELAEMYLDQVRGIQPHGPYHFIGWSFGGILAMEMSRRLVASDEKIGFLGIIDTYFNVRGATRTIGLGDTEILDPIHHIYNPDPANFQRLPSATDRIVLFKAMRPNNKYESENQRRLYEYYDALDSTDWTACYQAIPTSSWSRLRTIHTFPGSEIHNRWSRCVRLSRNTSLAIDPSLAAQYIGRWK", "sequence_length": 3791, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "061981fc05efb061a31fc65c6f975889cafb227614e04b5f66abc7e3c17f8837", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6N339.json", "taxon_id": "5076", "uniprot_accession": "A6N339", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)", "origins": [ { "cited_uniprot_accession": "B1YBY4", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/dicarboxylate-hydroxybutyrate-cycle.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "KEGG:M00374", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/dicarboxylate-hydroxybutyrate-cycle.yaml" } ], "pfam_ids": [ "PF00501", "PF13193", "PF16177" ], "protein_name": "AMP-dependent synthetase and ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MSAEFVEVYRKSLEDPIGFWEKQAERLYWRERWEKTYDDSNPPFYRWFVGGKTNISYNALDRHVKGGRANKAALIWVSADGATRVLRYWDLYREVNRFAVLLKSLGVERGDRVAIYMPMIPEAMVAMLAVNRIGAVHTVVFSGFGPQALAERIKDAEAKVVITADGMRRRGRVIPLKPTVDEALKIVGNDIFTVVYKHTGVEVPMKQGRDLWWQEEIAKIPPNTYIEPEWVPGEAPLFILYTSGTTGKPKGILHLHGQYMVWIWYAFNHLTGAERDFREDIVFFSTADIGWISGHHYGVHGPLLNGLTVLWYEDAPDYPHPGIWWEIADTYKVTHMLFSPTAIRLLMKYGDEWPRRYKLDSIMALYPTGEVLNEEAYNWMRREVCRGRPDCQIADIWGQTETACFVTAPGSMNLGGFRYKYGSVGMPYPTLNLQILDDDGKPLPPGAKGHVVAKPPLPPAFLHTLWRDPERYVKSYWSRFPGYYYTGDLGYIDQDGHLHIMGRSDDVIKVAGHRLSTREVEDILTSHPAVAEAAVVGVPDEVRGEVLGVFVVPKQGMKITEEEVVKHLRNSLGPVAVIGKVAILDKLPKTRTGKVMRRVLRAMATGQPVGDLSTLEDEEALEELRKKLG", "sequence_length": 629, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d7bc52078fbf8ca939e98a643712208bc9ff1d202b95a42ab2f633542a2daaf0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B1YBY4.json", "taxon_id": "444157", "uniprot_accession": "B1YBY4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:B9DGD6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF13193", "PF16177" ], "protein_name": "Acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ac29b2a3618ff7df48ae93ee5ce42fe75ae990915311ef1abf911c27700e4537", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKIGSPSSPILSVVSSSGSLDPKISGSLGSRILPATQRSSPSENLLLHRKMSSNSLRHVESMSQLPSGAGKISQLNAVVLGESLASEENDLVFPSKEFSGQALVSSPQQYMEMHKRSMDDPAAFWSDIASEFYWKQKWGDQVFSENLDVRKGPISIEWFKGGITNICYNCLDKNVEAGLGDKTAIHWEGNELGVDASLTYSELLQRVCQLANYLKDNGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSADSLAQRIVDCKPNVILTCNAVKRGPKTINLKAIVDAALDQSSKDGVSVGICLTYDNSLATTRENTKWQNGRDVWWQDVISQYPTSCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDYKSTDVYWCTADCGWITGHSYVTYGPMLNGATVVVFEGAPNYPDPGRCWDIVDKYKVSIFYTAPTLVRSLMRDDDKFVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGNEIEGECSGYLCVKGSWPGAFRTLFGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVLHPQCAEAAVVGIEHEVKGQGIYAFVTLLEGVPYSEELRKSLVLMVRNQIGAFAAPDRIHWAPGLPKTRSGKIMRRILRKIASRQLEELGDTSTLADPSVVDQLIALADV", "sequence_length": 743, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ac29b2a3618ff7df48ae93ee5ce42fe75ae990915311ef1abf911c27700e4537", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B9DGD6.json", "taxon_id": "3702", "uniprot_accession": "B9DGD6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces diastatochromogenes", "origins": [ { "cited_uniprot_accession": "C0JWB0", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/polyketides/polyketomycin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-96ff336a6a", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/polyketides/polyketomycin.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "PokM3", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MKREGFVPWPADAARRYVEADCWRGRPLGALMWDWADAWADRTALVDGDVRLGYAELAASADALAERLAGQGLADGDTVLVQLPNCWEFVVVTLACFRLGVAPVMMLPPHREYELASIGAHVRAKALVVPGTWRGYDHQALAHRVAERLPDEPLVLVVGDDVRPGGVDVRALLRPDGDTAARRGRLDKAAPDAMEVALFLLSGGTTGLPKVISRTHNDYEYNIRQSAAACAVTAETVYLTVLPAGHNYPLASPGILGTLSAGGRVVLLSSPRPDAVFAAIEREGVTTTSAVPAVALKWTEAAPGCGRDLSSLRHVHVGGSVLSPELAARIGPALGCRVQQVYGMAEGLICYTAPDATDEVAHGTQGAPVSAYDELLVVGPDGRPVRPGETGELLTRGPYTPRGYYGVPDQNALSFTPDGWYRTGDLVRITAQGHVVVCGRVKDLINRGGEKIAAGEIETLVQEMPEVAEVAAVPAPDPEVGERVCLFVRLHEGRALTLEDVSAALSGRGLAAFKIPERLEILPDLPHTPVGKPDKKALRGLLDGTRVEVTP", "sequence_length": 551, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7b84ddcf8ea5e568a1335b05389e07035bc390e3dedb214714ea12b81d845a39", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0JWB0.json", "taxon_id": "42236", "uniprot_accession": "C0JWB0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/6-2-1-ec6-2-1--.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:6.2.1.-", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/enzymatic_activity/ec/6-2-1-ec6-2-1--.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/coa-ligase-activity-go0016405.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016405", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/coa-ligase-activity-go0016405.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/fatty-acid-ligase-activity-go0015645.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015645", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/fatty-acid-ligase-activity-go0015645.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/fatty-acyl-coa-synthase-activity-go0004321.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0004321", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/fatty-acyl-coa-synthase-activity-go0004321.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/acyl-coa-synthetase-mbcs-nf047394.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF047394", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/acyl-coa-synthetase-mbcs-nf047394.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/medium-chain-acyl-coa-synthetase-macs-or-acsm-macs-catalyzes-the-two-s-cd05972.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05972", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/medium-chain-acyl-coa-synthetase-macs-or-acsm-macs-catalyzes-the-two-s-cd05972.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:C0SPB0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Uncharacterized acyl--CoA ligase YtcI", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "55513c878e4946d0d2d247b54f553a6eae4658e343cca5f4266c523be10cf7f6", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLKREDLIAPVQYNLVNEMEKFSAAGQKTALLWEDESGKQESWSYEKLMEETNKIGAALADLGFKKGDKLIVMVPRVLEAYAVYLAILKSGMVVIPCSEMLRAKDLEYRIEHAEVKGAIVYSEFIGAFRDVSTADKLITLSIGENDAGWKNLLSIEADGSQFKTADTTRDDMAFLSYTSGTTGQPKGVVHTHGWAFAHLKTSAGAWLDISEKDIVWATAAPGWQKWVWSPFLAVLGSGATGFVYHGRFKAEKYLELLNRYKINVFCCTPTEYRLMAKVEGLKRFDLSALHSAVSAGEPLNREVIDVFQKHFGIKVRDGYGQTESTLLVGVLKDTPIKPGSMGKPTPGNQVEIINEDGEICKPGEVGDIAVHLSTPALFKEYFKDPERMKTQIRGDYFLTGDRARKDEEGYFWFESRNDDIIISSGYTIGPFEVEDALVKHPEVKECAVVASPDEIRGSIVKAYVVLQNHEKRSDELVKMLQNHVKTITAPYKYPREIEFVESLPKTASAKIRRVELRKREEQLKANKKA", "sequence_length": 529, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "55513c878e4946d0d2d247b54f553a6eae4658e343cca5f4266c523be10cf7f6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0SPB0.json", "taxon_id": "224308", "uniprot_accession": "C0SPB0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces clavuligerus", "origins": [ { "cited_uniprot_accession": "E2PZ83", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/holomycin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:156451", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/holomycin.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF13193" ], "protein_name": "Phenyloxazoline synthase MbtB", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MVKRGVEFMEDLVAESLNSHPQTLPGAESRPAERHDAFPLTDIQHGYLIGRHKGLELGGVSSHYFFEFDGPALDVPRLTTALGRVVERHDMLRAVTDADGAQRVLAETPPYAIAVTDLREVSDAERDEALARIRAELENQVLPSDRWPPFDIRATHLPDRRTRLHVSVDLLFVDVRSLLLVLAEWRRFYDDPAWSPAPLDHTFRDHVLAERELRDGPAGRRAADYWTARLDEIPPAPDLPLATAPEQIGPPSFVLHRAVLPQDRWAALSATARRHGLTPSNLLLAAYAEVLRTWSRRQEFTLTLTLFKRLPLHPETNGVVGNFLSPNLLTVDGRSDETFGRRAARVQNRLLADLEHSAYGGVQVLRELTRRQGDGRNVSMPVVFTSTLDGDEGDAKGDPLSVFGELAHSASQTPQVWLENQVFEENGALTVNWNAVDGLFAPDTLDAMFHAYLALLDRLTDDESAWETAGGAVPLPAAELAERRAANATATDIPPRRLHELVHEAALRRPDAVAVITDGTEVTYRTLQENAHRIARRLRAEGCAEPDTLVAVSMRPGAAQIAALLGVLHAGAAYVAIDPELPEERRHSLLHRCRARAVVTEVELGASLSWPGGIQVVTPDDPATLRCGTGPLESRQSVDDLAYVIFTSGSTGEPKGVMISHRSAANTVQDINARFEVNERDRVLALAPAGFDLSVYDVFGILGAGGCVVVPSAGRGNDVAHWTELLDRHGVTVWNSVPAPMRLWTESLADLAEQDGAGHGGSLRLALLSGDWIPVALPGQIRRRVPGMRTISLGGATEGSIWSVCYPIGEVPADWTSIPYGKPLANQTLHVLNTWLEPSPRGVTGDIYIGGVGVAQGYWSDPVRTAERFIEHPVTGERLYRTGDLGRYLPGGDIEILGREDFQVKINGYRVELGEIEAALGRLPGMRQVMVTAPAHPRTGQRQLTAHLVGDDPAVLEPVALRTAMEAVLPGYMVPSHYLTRDALPLTANGKIDRDALALPWSDGDVAQGRTAPRGTVEERLFALWAELLGHSEFGVEDGFFDVGGDSLHAVRIIARLRADFGIDENAEQQVIEGLFMNATIADFTEVVRPFEEAGA", "sequence_length": 1096, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b27473a4fd8f5b7a2741874ab4581030ce0dfe5582d97e313ea2ad9e44f6a8c4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E2PZ83.json", "taxon_id": "1901", "uniprot_accession": "E2PZ83", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/long-chain-acyl-coa-synthetase-nf006134.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF006134", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/long-chain-acyl-coa-synthetase-nf006134.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Long-chain fatty acid transport protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLSWLTGLGAGLLSLHFLQKLLFPYFWDDFWYLLKVVRYGIQMEMYKLRGELVTVLDKFLSHTRKQPRKAFIIYEGDVYTYEDVDKRSNRIAHALLNHSSLKRGDVVALLMSNEPDFVHVWFGLAKLGCVVAFLNSNLRFDSLLHCINTCEPTAVVVGGDLLGSIEEILPSLPKHVRVWGMKDSVPEGIDSLQEKLSLASDEPVPPSHHVTSSLKSTCLYIFTSGTTGLPKAAVISQLQVLKGSVGLWAFGCTADDIIYITLPLYHSSGSLLGIGGCVELGATCVLKKKFSASQFWNDCKKYNVTVFQYIGELCRYLCKQPQREGEKDHRVRLAVGNGLSSDVWRQFLDRFGNIKMCELYGATEGNIVFMNHTGKIGSVGRANFFYSLFFSFELIKYDFQKDEPWRNGQGWCSCVRKGEPGLLISRVNKKNPFFGYAGSDTHTKSKLLFDVFRKGDVYFNTGDLMFQDQENFVYFWDRLGDTFRWKGENVATTEVADVLGRLDFIQEANVYGVRVPGYEGKAGMTSVILKPNKSLDLEKMYNQVVTSLPAYACPLFLRIQDKMETTGTFKLKKLQLVEEGFDPLKISDPLYFMDNLKKSYVPLTEEIYNQIMSEEVKL", "sequence_length": 619, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "55de3ae0f8d5a850e1a0a20b0002243f87ab71b17d987e88d160f011909a0772", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E9Q9W4.json", "taxon_id": "10090", "uniprot_accession": "E9Q9W4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/acyl-coa-synthetase-nf006020.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF006020", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/acyl-coa-synthetase-nf006020.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/fatty-acyl-coa-synthetases-similar-to-lc-facs-from-thermus-thermophile-cd12118.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd12118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/fatty-acyl-coa-synthetases-similar-to-lc-facs-from-thermus-thermophile-cd12118.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:F4HUK6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Butanoate--CoA ligase AAE1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d7ade707d380656e4e043754b14ccb741ae0b6960354ebd88a5a4fb5fe6b8db6", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKMEGTIKSPANYVPLTPISFLDRSAVVYADRVSIVYGSVKYTWRQTRDRCVRIASALSQLGISTGDVVSVLAPNVPAMVELHFGVPMAGALLCTLNIRHDSSLVAVLLRHSGTKVIFADHQFLQIAEGACEILSNKGDKVPILVLIPEPLTQSVSRKKRSEEMMEYEDVVAMGKSDFEVIRPTDECDAISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNPMFHCNGWCLLWGVTAIGGTNICLRNVTAKAIFDNISQHKVTHMGGAPTILNMIINAPESEQKPLPGKVSFITGAAPPPAHVIFKMEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKMKARQGVNHLGLEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFKGGWFWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVARPDEYWGETACAFVKLKDGSKASAEELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRTKAKALVSLSKKGRSKL", "sequence_length": 556, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d7ade707d380656e4e043754b14ccb741ae0b6960354ebd88a5a4fb5fe6b8db6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4HUK6.json", "taxon_id": "3702", "uniprot_accession": "F4HUK6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sam-aae17-18-pf27750.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27750", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sam-aae17-18-pf27750.yaml" } ], "pfam_ids": [ "PF00501", "PF13193", "PF27750" ], "protein_name": "Probable acyl-activating enzyme 17, peroxisomal", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYKSLNSITKSDIEALGISGDVSEKLLRDLEDIIHGSSTPPETWIQISRRILHPNLPFSFHQMMYYGCYKDFGPDLPAWIPDPKVASLTNVGKLLEKRGKEFLGGNYKNPVSSFSSFQEFSVSNPEVYWKTVLDELNILFSVPPKCILEKDTSGDNPGGKWLPGAYLNPARNCLTNGFKRRLDDIVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALGLEEESAIAVDMPMNVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPLYRRVVDAEAPLAIVVPARGSSCRMKLREKDLSWNNFLGNARNLRGVEYVAAEKPAGAYTNILFSSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWLVYASLINGACMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGSTGEASNIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGCKLFILDEDSNPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRHGDLFERTSKGYYRAHGRADDTMNLGGIKVGSIEIERVCNSVDDSVLETAAIGVPPPSGGPEQLVIAVVFKSPEFSNPDLNLLKKSFNSEIQKKLNPLFKVSSVVTLPSLPRTATNKVMRRVLRQQLTQTGLNSKL", "sequence_length": 721, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e42261001bb510a70c6fc8c03f5db090a2e39859dc6b2dfdbc4721d054d1b287", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4KBF3.json", "taxon_id": "3702", "uniprot_accession": "F4KBF3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudoalteromonas sp. (strain SANK 73390)", "origins": [ { "cited_uniprot_accession": "F8J3D9", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/polyketides/thiomarinol.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-6fc5164982", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/polyketides/thiomarinol.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Marinolic acid--CoA ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNESALNPNYLFHPFVKRFPGDPEHVRNISDIQQLEKYPISERFPCQTVTDALFIAAKKYQHARAMSYLPNGRADDVLQSWSYLEFLEQCIGAANLFHSLGIESDHSVAFLLPNMPEMVFGLWGAQAVAISTPINPFLAVNHICGIVTETKTTILVTLSPDTNPSLFEKALAVKHNTTHTMTLVTIGTPCEDAIDWHTELKKQPFNRYLFNRQLTGMETSAYFHTGGTTGTPKIARHTHRGAMINACQMLIVGPTETELDTKSKVSLCALPLFHVNAIVVSSLTSLLNGSELLLAGQQGFRNKALMSDFWRIVERFKVNFFAGVPTVYAALLEQPVEQHNIDSLFYCGCGSSPMPQVLIKEFTQRTGADICEGYGMTETTACASTHYYYGDRKVGSVGMRVPYQHIRAVHLDDNGQIIKECDCDEVGVLLIQGPNVIPEYKQAFANEQAWPEPGWLNTGDLGKFDADGYLWLTGRQKDLIIRGGHNIDPLIIENTLVSHSDVVMAAAVGKPDAYAGELPVAYVTLTSGATLSADELKQYCKDYISEPAASPVEIYITAELPMTPIGKIFKLPLKHDVIVRFVRELIQALDDTLDFSIDIIDDVSTGNIVSINFAATREKMEAVASQLQQELDKLHFQWKCTFTPVLAEQTVLES", "sequence_length": 654, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8ede2c43760d258d687e65a7d196ef1951cb61768874beb4eebd754c64a0e372", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F8J3D9.json", "taxon_id": "747457", "uniprot_accession": "F8J3D9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O07610", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Long-chain-fatty-acid--CoA ligase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "14c9d7e60cf5a1f31d093528b78d2243d1f19dc36d979268c5b48128a4d61d3f", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNLVSKLEETASEKPDSIACRFKDHMMTYQELNEYIQRFADGLQEAGMEKGDHLALLLGNSPDFIIAFFGALKAGIVVVPINPLYTPTEIGYMLTNGDVKAIVGVSQLLPLYESMHESLPKVELVILCQTGEAEPEAADPEVRMKMTTFAKILRPTSAAKQNQEPVPDDTAVILYTSGTTGKPKGAMLTHQNLYSNANDVAGYLGMDERDNVVCALPMFHVFCLTVCMNAPLMSGATVLIEPQFSPASVFKLVKQQQATIFAGVPTMYNYLFQHENGKKDDFSSIRLCISGGASMPVALLTAFEEKFGVTILEGYGLSEASPVTCFNPFDRGRKPGSIGTSILHVENKVVDPLGRELPAHQVGELIVKGPNVMKGYYKMPMETEHALKDGWLYTGDLARRDEDGYFYIVDRKKDMIIVGGYNVYPREVEEVLYSHPDVKEAVVIGVPDPQSGEAVKGYVVPKRSGVTEEDIMQHCEKHLAKYKRPAAITFLDDIPKNATGKMLRRALRDILPQ", "sequence_length": 513, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "14c9d7e60cf5a1f31d093528b78d2243d1f19dc36d979268c5b48128a4d61d3f", 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"MKRQLKSPLSEGQKGLWMLQKMSPGMSAYNIPLCFRFSKPIHAETFKKALLFVQRQYPVLASVIQEENGIPFQSVQLSKDLYFVEEDISAMKSADIMPFLKEKAKEPFQLEAGPLWRTHLFHRLEECIVLITIHHIIFDGVSMLTLISALFEAYQQLLNGIEPLQQPSTADYYDFVDWENRMLTGREGEEHLAYWKEQLSGSLPVLDLPADRPRSSARKFKGQAYKSLLPHHLRNQIKSFARTNHVNESVVFLSIYKVLLHHYTKQKDIIVGVPTMGRQEDRFETLIGYFINMMAVRSKNIGSQPLTAFIRELQLTVAVGLDHAAFPFPALVRELNVDRSAADSPVFQTAFLYQNFFQATGLQKVLEPYQTLGIEYIEDIRQEGEFELALEIYEQENETVLHLLYNPDLYELSSIESMMENYMKLAQHMMEDPSLPLEAYSLQLNQEQTSLLEQWNATGTNIANDKCIHEVFEEKAKQTPDAVAVMFEDRSLTYKEVDEKSTSVAVYLQHQGVRPEQPVGICAERSFDMIIGILGILKAGGAYVPLDPSFPQERLKYMLKDSQASIVLTQPNVHDRISGLTGSHVKAINIELACRNGYTDQQSSGLKREVKPEHLAYIIYTSGSTGEPKGVMVEHRSIMNTLNFLESHYPVTAEDAYLLKTNYVFDVSISELFGWFIGDGRLVILPPNGEKSPQLCMDYIETYKVTHINFVPAMLHVFLEMAKDNKRFTEDGPLKYMMVAGEAFPKVLVKKAVSLFTNCRVENIYGPTEASIYAAYFGCGKGDIASHHTPIGKPVSNTKIYIVDQHLKPVPIGKPGELCIAGAGLARGYFKKPGLTAEKFIDNPFESGTKLYKSGDSARWLPDGNIEYLGRIDSQVKIRGFRVELGAIETKLGEFPGILDQAVVVKQLEGHQQLAAYYTEESGHASANPKDLRLHLKSSLPEYMIPSHFIRLDELPLSPSGKVNRKELEKREIVFNRRKPNHLQLTEIEDQVLRIWEETLKVSGFGPEDGFFDAGGDSLLAVAVAERIKKEFDCEFHVTELFEYSTIRAISEYILEMKNSDLAGTQNEDDHDDKKDGKYPKQKIPPYFDDSVAIVGISCQFPGAKNHHDFWNHIKEGKESIRFFSEEELRANGVPEELIQHPDYVPVQSVIEGKDLFDPGFFQISPKDAEYMDPQLRLLLLHSWKAIEDAGYVAKEIPATSVYMSASSNSYRTLLPKETTEGHESPDGYVSWVLAQSGTIPTMISHKLGLKGPSYFVHSNCSSSLVGLYQAYKSLTSGESQYALVGGATLHAQSAIGYVHQNGLNFSSDGHVKAFDASADGMAGGEGVAVILLKKAVDAVKDGDHIYAIMRGIGINNDGAEKAGFYAPSVKGQTEVIQHVLDTTKIHPETVSYIEAHGTGTKLGDPIEMSALNKVYKQYTDKTQFCGIGSVKTNIGHLDTAAGLAGCIKVAMSLYHNELAPTINCTEPNPDIKFESSPFYVVRERKSLEKHAGVHRAALSSFGLGGTNAHAIFEQYENISDAGAENEGNQPYIIPISAKNSERLQVYAKEMLSYISQDEQRHFSLRDIAYTFQVGREAMDNRIVFIVNDLEEWKHQLEAFVTGKPLAEGCIQGEKTRMTSAEQLLGNAEADDMASSRISKEELRKLAEMWANGFHVEWRRLYPNIKPRRISLPTYPFAEERYWPESSTGAITTIEPSRLHPLVHHNTSVLSEQRFSSIFTGQEYFIAEHIIKGMAILPAAVTLEMARAAIEQGIGGLEDHETGIRLKNVVWVRPVVAGSEPVQVNIGLYDEDGGHIAYRMYGDPESADAEPVVYNQGKAELIQLKREKALDLSKIKKQCDQSKMDAASFYEGMIGADYGPGYKSVEAVYKGDGQLLAKLSLPESVAHTLGDYVLHPSVMDGALQAAEYLQNVVRAELSDTEDFKAALPFALEELEVFRQCVSDMWVYVQFNSKNKPGDLIQKVDIHLCDEHGMICVRLKGFSTRVMEADIQTEPSKINAETLLLQPVWQEQKAANSLAAKKYAEHLVFLCEYDHETRKQIEAAIEDVHVYSLEARPSSVDGRFHSYTEQVFKKVQEIIRTKPKDGILVQIVTSAEGEQQLFSGLTGLLKTACQENAKLTGQMIEVSSEESGESIAGKLLENQMSSDSYVKYQNGTRYIADWREIKQAKGDGSKPWKDNGVYLISGGAGGLGHIFAKEIAEQTKNATVILAGRSPLSESKSKKLKELHSKGADITYRQTDVTNKIEVYQLIDDIQKRYGRLNGILHSAGIIKDSYLVNKQAKDLHDVLAPKVKGLVYLDEASKDLPLDFFILFSSLSGSLGSIGQSDYAAANVFMDMYAGYRNRLADLSQRHGQTLSVNWPLWRDGGMQVDQETEKRLVQLAGIVPMRAEKGIQALYQALHSEANQVMVIEGDVQKIKQNMLAKNASAPMEKKEAEHMTEQINSIDADSLLDKVKAMLKREIAKLLKVKLETIDDHAEMTVYGFDSISMTEFTNHINRAYQLELTPTVFFDHPTIHAFGKHLSEEYQSVFAKTFAVRAVSAQLQPAAKQEQAVRAKAKRRRKQQVMLPNAIQSDAGPEPIAIVGISGIFPMAKDVEAYWNILKEGKDCMTEIPKDRWDWREYEGDPAKEVNKTNVKWGGFIDGIADFDPLFFGISPREAEQMEPQQRLLLTYAWKAIEDAGYSAKRLSGTKTGVFIGTGNTGYSSLLSKANSAIEGSAAANTSPSVGPNRVSYFLNLHGPSEPVDTACSSSLVAIHHAISSIEEGTCDMALAGGVNTIILPEVYISFDKAGALSKEGKCKTFSNQADGFAHGEGAGILFLKKLKAAEEAGDHIYGVIKGSAINHGGRAASLTTPNPKAQADVIQSAYQKAGIDPKTVTYIEAHGTGTELGDPVEINGLKSAFKALGVNEGDTSANPYCGLGSVKTNIGHLSLAAGAAGVIKILLQLKHKTLVKSLHCENVNPYIQLKNSPFYIVRETEEWKALKNEQGEELPRRAGVSSFGIGGVNAHVIIEEYIPEASDENIPSIAPEHPGIFVLSAKNEARLKEHAQQLADALDKQTYSDVNLARIAYTLQAGRDAMEERLGIISGSIEDLQKKLKDFAAEKSGVEDVFKGRIDKGTLQMLTEDEEIQEAVEKWMERGKYAKLLELWVKGLDVDWTKLYGENLPKRISLPTYPFAKDRYWISDHIEKSGSIDANQAASRLGGAVLHPLMHQNTSNLSEQRFSSIYTGEEFFLADHVVKGQRILPGVAHLELARAAVEQAAEVQGVPRIMKLKNAVWVRPIVVEDQPQQVHIRLLPGENGEISYEIYGHSDVTGEQSIVYSQGSAVLNPAENLPAVDLQSLREQCQESHFSVNEVYDTYRMIGFEYGPAYRGVKKIYTAEQFVLAKLSLHPSAADTLSQYKMHPGLMDSALQASSILTGAGDNQLTLPFAVQELEVFGACSSEMWVYARYSQGSKATDKVQKRDMDILDESGNVCVRMKGLSFRAAEGGSGSAESDQTLATLMFEEKWVPKDFKKESPEPHYERHIVMLCDMNGLSKDRIESRMTGAECIVLESFREGLAERFQDYAEQALETVQGLLKSRPQGNVLIQLLTSAQRKQYSFSGLSALLKTAGLENKKLIGQTIEIDSHENVESVIEKLKENKRHTEDQHIKYEKGKRYINDLDEMQIDDREISMPWRDKGVYLITGGAGGLGFIFAKEIARQAEQPVLILTGRSALNADQQAELNELQQLGARAEYRQVDVTQTEAASELITSITSDYEDLNGVIHSAGLIKDNYLMSKTNEELTQVLAPKVKGLVNVDEATEHLALDFFILFSSISSVAGSAGQADYAMANAFMDSYAAYRNALVTAMYRHGQTLSINWPLWKEGGMRANKEIENMTLKNTGVTPMRTETGIQALYKGLAFGKDQVIVMEGFKDMMREKLTQKPSSDDVPMKTVQVRVTSEARMDQGNMFDHIQEVLKQTISQLLKIKPEEIDPDMEFNQYGFDSITLTEFANTLNEKCKLDLTPTVFFEHATVYAFAGYLSEEYPNAFTAQTPAKAEVLMQPVEQNIKNMTFSTENRFVKPSVTPMQKEADHKPEPIAIVGMSGVFPKAKDVEEYWKNLSSGADCITEVPKDRWDWQEYYGDPLKEANKTNVKWGGFIDEVADFDPLFFGISPLEAEQMEPQQRLLMTYAWKAVEEAGHSARSLAGTKTGIFIGTGNTGYSSLLSNVDIEGSAAANMSPSAGPNRVSYFLNIHGPSEPIDTACSSSLVAIHHAVCAIENGNCEMAIAGGVNTVVTPQGHIAYDKAGALSKEGRCKTFSDKADGFAVSEGAGILFLKKLTAAERDGDHIYGVIKGSAVNHGGRANSLTTPNPKAQADVVKTAYEKAGIDPRTVTYIEAHGTGTELGDPVEINGLKAAFKELYEKTGDPAVHGSHCGLGSAKTNIGHLSLAAGVAGVIKVLLQLKHKTLVKSLYSETVNPYIRLDDSPFYIVQESREWQALRDEAGRELPRRAGISSFGIGGVNAHVVIEEYIPKETTHPATAPAVTAQHPGIFILSAKDEDRLKDQARQLADFISKRSITARDLTDIAYTLQEGRDAMEERLGIIAVSTGDLLEKLNLFIEGGTNAKYMYRGRAEKGIAQTLRSDDEVQKTLNNSWEPHIYERLLDLWVKGMEIGWSKLYDGKQPKRISLPTYPFAKERYWITDTKEEAAAHQTALKTVESAALHPLIHVNTSDLSEQRFSSAFTGAEFFFADHKVKGKPVMPGVAYLEMVHAAVTRAVRRTEDQQSVIHIKNVVWVQPIVADGQPVQVDISLNPQQDGEIAFNVYTEAAHNDRKIHCQGSASIRGAGDIPVQDISALQDQCSLSTLSHDQCYELFKAIGIDYGPGFQGIDRLYIGRNQALAELSLPAGVTHTLNEFVLHPSMADSALQASIGLKLNSGDEQLSLPFALQELEIFSPCTNKMWVSVTSRPNEDKIQRLDIDLCDEQGRVCVRIKGITSRLLEEGIQPPDGPTSLGNSKATLNGALLMAPIWDRVQLEKRSISPADERVVILGGDDNSRKAVQREFPFAKELYIEPNASIHRITGQLEALGSFDHIVWMSPSRVTECEVGDEMIEAQDQGVIQMYRLIKAMLSLGYGQKEISWTIVTVNTQYVDQHDIVDPVDAGVHGLIGSMSKEYPNWQTKLIDVKKYEDLPLSQLLSLPADQEGNTWAYRNKIWHKLRLIPVHNNQPVHTKYKHGGVYVVIGGAGGIGEAWSEYMIRTYQAQIVWIGRRKKDAAIQSKLDRFARLGRAPYYIQADAANREELERAYETMKQTHREINGIIHSAIVLQDRSLMNMSEECFRNVLAAKVDVSVRMAQVFRHEPLDFVLFFSSVQSFARASGQSNYAAGCSFKDAFAQRLSQVWPCTVAVMNWSYWGSIGVVSSPDYQKRMAQAGIGSIEAPEAMEALELLLGGPLKQLVMMKMANETNDEAEQTEETIEVYPETHGSAIQKLRSYHPGDNTKIQQLL", "sequence_length": 5488, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "aa70b66c712172cbe1f8ba711735104f2fe3bc33072a9de6928291c58eb4883c", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O31782.json", "taxon_id": "224308", "uniprot_accession": "O31782", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/fatty-acid-coa-ligase-family-protein-nf009233.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF009233", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/fatty-acid-coa-ligase-family-protein-nf009233.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-fatty-acid-coa-ligase-facl-fatty-acyl-coa-cd05917.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05917", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-fatty-acid-coa-ligase-facl-fatty-acyl-coa-cd05917.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O31826", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Putative acyl-CoA synthetase YngI", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "46705629c40f2922a42f611b23681eb21df4e12a440c0566cfa9f36b774b6e2e", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAELIHSTIGRLLEQTADAYPDRDAVVYPDRNIRYTYAQFDSLCRQTAKGLMRMGIGKGDHVAIWASNISEWLAVQFATAKIGAVLVTVNTNYQAHELDYLLKQSDAAALIIMDSYRGTSYPDIVNSLIPELQEAKPGQLKSERYPFLKTLIYIGNKRLSGMYHWDDTEILAKTVTDAELEERMNSLDKDNVINMQYTSGTTGFPKGVMLTHFNVINNAANIAECMALTSQDRMCIPVPFFHCFGCVLGVLACVSVGAAMIPVQEFDPVTVLKTVEKEKCTVLHGVPTMFIAELHHPDFDAYDLSTLRTGIMAGSPCPSEVMKAVIERMGMKDITIAYGQTEASPVITQTRANDSFIRRVETTGRALPHTEVKIVEPGTCQEVQRGMQGELCTRGYHVMKGYYKDKDATRKAINHDGWLFTGDLAVMDEDGYCRITGRLKDMLIRGGENIYPREIEEFLYQHPAVLDVQVVGVPDAKFGEEAAAWIKLKDGKSVSPDELKAYCKGKIARHKIPRYVIFTDDYPMTASGKIQKYKLREKTIEMFNLSSSQ", "sequence_length": 549, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "46705629c40f2922a42f611b23681eb21df4e12a440c0566cfa9f36b774b6e2e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31826.json", "taxon_id": "224308", "uniprot_accession": "O31826", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O31827", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF00975", "PF13193" ], "protein_name": "Plipastatin synthase subunit E", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e6fceaf09f8186e192f01a73e00597e150404758edaf57e405248e4075841ca8", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKKGADTMNTIKKIKNIYPLSHMQEGMLFHSFLRKEEGAYVEQSLFTIKGSLSYDWFQRSIQAIIDRHDIFRTVFLPHVPHLSGPRQVVMTEREFHLNSEDISHLPTNDQNEYIERFKEKDKQKGFDLQKDMLMRISLFKTAKDEHVCIWSHHHILMDGWCLGIVMQEFMQIYQSIHAGKPLSLDPVRPYSTYISWLTNRDKEKAAAYWDTYLKNYSAPSPLPRVSDKETKESYHREDLIFSLNKPLTDKLKETAKQHGVTLATLIQAVWGVMLQQYNRTDDVVFGAVVSGRPSEIPGVEQMIGLFINTIPIRIKTHQDETFHELLIRCQKEMLEAEPFTCQPLFDIQANTALKQELIDHIIVFENYPLQQKIADSADQTDSPLQIDQVQVSEQSGYNFNLVVAPGEELVIKFSYNAFVYDAAWISCIKRQFTQALSTAAQHPHMPIADFSFLDATEKEQIVTQFNNTKTEYPKNHTIIDLFREQAEKTPDHTALVYGNMSISYKELDKRSNALARELIQKGFRKNETAGILAAHSPEFMISVLAVLKAGGAYLPLDAELPPERVSFMLEETQAKMLIVQKGLEQNAAFSGTCIISDAQGLMEENDIPINISSSPDDLAYIMYTSGSTGRPKGVMITNRNVVSLVRNSNYTSASGDDRFIMTGSISFDAVTFEMFGALLNGASLHIIDKSTMLTPDRFGAYLLENDITVLFLTTALFNQLAQVRADMFRGLHTLYVGGEALSPALMNAVRHACPDLALHNIYGPTENTTFSTFFEMKRDYAGPIPIGKPISNSTAYILDTKGRLLPIGVPGELCVGGDGVAKGYLNRVDLTNAVFSPHPFLPGERIYRTGDLARWLPDGNLEYISRIDRQMKIRGKRIEPAEIEARLLEMEGVQEAAVTLREKDGEAQLYTHYVGDHKKTDTDFRADLARVLPDYMIPQHWVRVERMPLTGNGKIDRSALPIPENKPAKRQNIILPRNLVEEELANIWKQVLGVNTISIDDDFFAIGGHSLRALQVIHTLKHQQNIDIPIDFLFEHPTIAQLAEKLYSKQLTAANEQHVIKLNQHGAQNLFCFPPISGFGIYFKDLALLLNEKAAVYGFHFIEQDTRIEQYVNCMTDIQPEGPYVLLGYSAGGNLAFEVAQAMERKGLEVSDFIIVDAYLKEQPLPIDTGNDESAAYLPEAVREKVMKKKRNYQEYWAQLLNEGHIKASIHFIEAGIHPETSGHTGLTKWEGACGNYSEYTGFGAHKDMLEGTYAEKNADIILDILEKITSNQVILHKR", "sequence_length": 1279, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e6fceaf09f8186e192f01a73e00597e150404758edaf57e405248e4075841ca8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31827.json", "taxon_id": "224308", "uniprot_accession": "O31827", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/cholate-coa-ligase-activity-go0047747.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0047747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/cholate-coa-ligase-activity-go0047747.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/phytanate-coa-ligase-activity-go0050197.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050197", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/phytanate-coa-ligase-activity-go0050197.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/pristanate-coa-ligase-activity-go0070251.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/pristanate-coa-ligase-activity-go0070251.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/fatty-acid-alpha-oxidation-go0001561.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0001561", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/fatty-acid-alpha-oxidation-go0001561.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/methyl-branched-fatty-acid-metabolic-process-go0097089.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097089", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/methyl-branched-fatty-acid-metabolic-process-go0097089.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/very-long-chain-fatty-acid-catabolic-process-go0042760.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042760", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/very-long-chain-fatty-acid-catabolic-process-go0042760.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/long-chain-acyl-coa-synthetase-nf006134.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF006134", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/long-chain-acyl-coa-synthetase-nf006134.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/fatty-acid-transport-proteins-fatp-including-hsfatp2-hsfatp5-and-hsfat-cd05938.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/fatty-acid-transport-proteins-fatp-including-hsfatp2-hsfatp5-and-hsfat-cd05938.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/amp-binding-enzyme-c-terminal-domain-ipr025110.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025110", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/amp-binding-enzyme-c-terminal-domain-ipr025110.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/anl-c-terminal-domain-3-30-300-30.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.300.30", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/anl-c-terminal-domain-3-30-300-30.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Long-chain fatty acid transport protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPVLYTGLAGLLLLPLLLTCCCPYLLQDVRYFLRLANMARRVRSYRQRRPVRTILRAFLEQARKTPHKPFLLFRDETLTYAQVDRRSNQVARALHDQLGLRQGDCVALFMGNEPAYVWIWLGLLKLGCPMACLNYNIRAKSLLHCFQCCGAKVLLASPDLQEAVEEVLPTLKKDAVSVFYVSRTSNTNGVDTILDKVDGVSAEPTPESWRSEVTFTTPAVYIYTSGTTGLPKAATINHHRLWYGTGLAMSSGITAQDVIYTTMPLYHSAALMIGLHGCIVVGATLALRSKFSASQFWDDCRKYNVTVIQYIGELLRYLCNTPQKPNDRDHKVKKALGNGLRGDVWREFIKRFGDIHVYEFYASTEGNIGFVNYPRKIGAVGRANYLQRKVARYELIKYDVEKDEPVRDANGYCIKVPKGEVGLLVCKITQLTPFIGYAGGKTQTEKKKLRDVFKKGDIYFNSGDLLMIDRENFVYFHDRVGDTFRWKGENVATTEVADIVGLVDFVEEVNVYGVPVPGHEGRIGMASLKIKENYEFNGKKLFQHIAEYLPSYARPRFLRIQDTIEITGTFKHRKVTLMEEGFNPTVIKDTLYFMDDAEKTFVPMTENIYNAIIDKTLKL", "sequence_length": 620, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "455ac595463414f4f6fe7401b28e918b09b5baf6187f2798bac0a1f17b430a1a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O35488.json", "taxon_id": "10090", "uniprot_accession": "O35488", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/fatty-acyl-coa-synthetases-similar-to-lc-facs-from-thermus-thermophile-cd12118.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd12118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/fatty-acyl-coa-synthetases-similar-to-lc-facs-from-thermus-thermophile-cd12118.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Probable acyl-activating enzyme 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELLLPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSETHSRCLRIASTLSSASLGINRGQVVSVIGPNVPSVYELQFAVPMSGAVLNNINPRLDAHALSVLLRHSESKLVFVDHHSSSLVLEAVSFLPKDERPRLVILNDGNDMPSSSSADMDFLDTYEGFMERGDLRFKWVRPKSEWTPMVLNYTSGTTSSPKGVVHSHRSVFMSTINSLLDWSLPNRPVYLWTLPMFHANGWSYTWATAAVGARNICVTRVDVPTIFNLIDKYQVTHMCAAPMVLNMLTNHPAQKPLQSPVKVMTAGAPPPATVISKAEALGFDVSHGYGMTETGGLVVSCALKPEWDRLEPDERAKQKSRQGIRTAVFAEVDVRDPISGKSVKHDGATVGEIVFRGGSVMLGYYKDPEGTAASMREDGWFYTGDIGVMHPDGYLEVKDRSKDVVICGGENISSTELEAVLYTNPAIKEAAVVAKPDKMWGETPCAFVSLKYHDGSVTEREIREFCKTKLPKYMVPRNVVFLEELPKTSTGKIQKFLLRQMAKSLP", "sequence_length": 545, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "591644d8a3a37e5d8777e4aef5876bafec6461518ef48444f757afd4c48fbeff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O80658.json", "taxon_id": "3702", "uniprot_accession": "O80658", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/fatty-acid-transport-proteins-fatp-including-hsfatp2-hsfatp5-and-hsfat-cd05938.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/fatty-acid-transport-proteins-fatp-including-hsfatp2-hsfatp5-and-hsfat-cd05938.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Long-chain fatty acid transport protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAALLLLLPLLLLLPLLLKLDVWPQLRWLPADLAFTVRALRCKRALRARALAAAAADPESSESGCSLAWRLAYLAREQPTHTFLIHGAQRFSYAEAERESNRIARAFLRARGWTGGRRGSGRGSTEEGARVAPPAGDAAARGTTAPPLAPGATVALLLPAGPDFLWIWFGLAKAGLRTAFVPTALRRGPLLHCLRSCGASALVLATEFLESLEPDLPALRAMGLHLWATGPETNVAGISNLLSEAADQVDEPVPGYLSAPQNIMDTCLYIFTSGTTGLPKAARISHLKVLQCQGFYHLCGVHQEDVIYLALPLYHMSGSLLGIVGCLGIGATVVLKPKFSASQFWDDCQKHRVTVFQYIGELCRYLVNQPPSKAECDHKVRLAVGSGLRPDTWERFLRRFGPLQILETYGMTEGNVATFNYTGRQGAVGRASWLYKHIFPFSLIRYDVMTGEPIRNAQGHCMTTSPGEPGLLVAPVSQQSPFLGYAGAPELAKDKLLKDVFWSGDVFFNTGDLLVCDEQGFLHFHDRTGDTIRWKGENVATTEVAEVLETLDFLQEVNIYGVTVPGHEGRAGMAALALRPPQALNLVQLYSHVSENLPPYARPRFLRLQESLATTETFKQQKVRMANEGFDPSVLSDPLYVLDQDIGAYLPLTPARYSALLSGDLRI", "sequence_length": 667, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9731ec147dab11a850c2f28a5985fb506d4e2529277369b23464b9b09725b48", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O88561.json", "taxon_id": "10090", "uniprot_accession": "O88561", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/eukaryotic-medium-chain-acyl-coa-synthetase-macs-or-acsm-macs-catalyze-cd05928.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05928", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/eukaryotic-medium-chain-acyl-coa-synthetase-macs-or-acsm-macs-catalyze-cd05928.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Acyl-coenzyme A synthetase ACSM4, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIFFRYQTFRFIWLTKPPGRRLHKDHQLWTPLTLADFEAINRCNRPLPKNFNFAADVLDQWSQKEKTGERPANPALWWVNGKGDEVKWSFRELGSLSRKAANVLTKPCGLQRGDRLAVILPRIPEWWLVNVACIRTGIIFMPGTIQLTAKDILYRLRASKAKCIVASEEVAPAVESIVLECPDLKTKLLVSPQSWNGWLSFQELFQFASEEHSCVETGSQEPMTIYFTSGTTGFPKMAQHSQSSLGIGFTLCGRYWLDLKSSDIIWNMSDTGWVKAAIGSVFSSWLCGACVFVHRMAQFDTDTFLDTLTTYPITTLCSPPTVYRMLVQKDLKRYKFKSLRHCLTGGEPLNPEVLEQWRVQTGLELYEGYGQTEVGMICANQKGQEIKPGSMGKGMLPYDVQIIDENGNVLPPGKEGEIALRLKPTRPFCFFSKYVDNPQKTAATIRGDFYVTGDRGVMDSDGYFWFVGRADDVIISSGYRIGPFEVESALIEHPAVVESAVVSSPDQIRGEVVKAFVVLAAPFKSYNPEKLTLELQDHVKKSTAPYKYPRKVEFVQELPKTITGKIKRNVLRDQEWRGR", "sequence_length": 580, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c436be175bf55b73d76ff4116a296576c02d0ba58c92909d7e7c77dbea0da62a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C7M7.json", "taxon_id": "9606", "uniprot_accession": "P0C7M7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces sp", "origins": [ { "cited_uniprot_accession": "P0DY48", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/altemicidin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-a58ee03ee4", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/altemicidin.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "2-sulfamoylacetate:[peptidyl-carrier protein] ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSSSPTDAERAHTYRGIPFEDRLTPHPTVVSWLVHHARTRGGAPFLTTVSGDGEPSTLTYGELDVLSRRVARWLRAELDIAPGRTVALAPANDPVSVVALLGVLRAGCALLLLGPQDPADRRRQQAEAARAQVVLRSPAVPAEALPEAVVIPDPGTLADPAGPDADPVLDPAQDALFFATSGSTAAAKLVAQSHYNAAVNAEALGRHHGLRPGDRLLGCLPVHHVNGLHFTVLGVLAAGAHVLLADGFAPLRYPRLLQRFRPRIASVVPSVLEALLETWRQPELPADFGYFVSAAAPLTVRTARAVRDRFGARVLQGYGLTETVNFSTTLPADLSEDAYRRLMLDTDIPSIGTALYGNEVAVLTPEGTRATPGQVGEICVRGHNVMSRYEANPHATAEAFAGGWFHTQDLGLEVTDPDCDGPFIVITGRRKNIAKVGGETVSLDEMDRVLRAHPQVRDAACAALPHRFLGEEIVAAVVPASGAQGPPDVRPALAAAFRPGVLPRRVELLDAIPRTRTGKVLRRELANRLAGTDTADGVHGPRTPATPDSPRPNSGSTR", "sequence_length": 559, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "33c4b4a6ab001a53e40b7d4b1f3002617137701d4284281f093c485a5dbc453b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DY48.json", "taxon_id": "1931", "uniprot_accession": "P0DY48", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P10378", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Enterobactin synthase component E", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3d014a81839e09a5933c282e6c81c453a7bde3d3852536c9e1337ba0228674d4", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSIPFTRWPEEFARRYREKGYWQDLPLTDILTRHAASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRASA", "sequence_length": 536, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3d014a81839e09a5933c282e6c81c453a7bde3d3852536c9e1337ba0228674d4", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P10378.json", "taxon_id": "83333", "uniprot_accession": "P10378", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "P23971", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/superpathway-of-menaquinol-8-biosynthesis-i.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY-5838", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/superpathway-of-menaquinol-8-biosynthesis-i.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P23971", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "2-succinylbenzoate--CoA ligase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "688d7a8dc52e1ceb13a31dd9567cd8464c0877496b49c05579e32229172edb6b", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLTEQPNWLMQRAQLTPERIALIYEDQTVTFAELFAASKRMAEQLAAHSVRKGDTAAILLQNRAEMVYAVHACFLLGVKAVLLNTKLSTHERLFQLEDSGSGFLLTDSSFEKKEYEHIVQTIDVDELMKEAAEEIEIEAYMQMDATATLMYTSGTTGKPKGVQQTFGNHYFSAVSSALNLGITEQDRWLIALPLFHISGLSALFKSVIYGMTVVLHQRFSVSDVLHSINRHEVTMISAVQTMLASLLEETNRCPESIRCILLGGGPAPLPLLEECREKGFPVFQSYGMTETCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQVCEPYEHGEIMVKGPNVMKSYFNRESANEASFQNGWLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAVAEAGVSGAEDKKWGKVPHAYLVLHKPVSAGELTDYCKERLAKYKIPAKFFVLDRLPRNASNKLLRNQLKDARKGELL", "sequence_length": 486, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "688d7a8dc52e1ceb13a31dd9567cd8464c0877496b49c05579e32229172edb6b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P23971.json", "taxon_id": "224308", "uniprot_accession": "P23971", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P27206", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF13193" ], "protein_name": "Surfactin synthase subunit 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "66e045cc2c62f7df9e3f2f8f0b6b40e9ff3389a53eb862bde1107f77f9647c83", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEITFYPLTDAQKRIWYTEKFYPHTSISNLAGIGKLVSADAIDYVLVEQAIQEFIRRNDAMRLRLRLDENGEPVQYISEYRPVDIKHTDTTEDPNAIEFISQWSREETKKPLPLYDCDLFRFSLFTIKENEVWFYANVHHVISDGISMNILGNAIMHIYLELASGSETKEGISHSFIDHVLSEQEYAQSKRFEKDKAFWNKQFESVPELVSLKRNASAGGSLDAERFSKDVPEALHQQILSFCEANKVSVLSVFQSLLAAYLYRVSGQNDVVTGTFMGNRTNAKEKQMLGMFVSTVPLRTNIDGGQAFSEFVKDRMKDLMKTLRHQKYPYNLLINDLRETKSSLTKLFTVSLEYQVMQWQKEEDLAFLTEPIFSGSGLNDVSIHVKDRWDTGKLTIDFDYRTDLFSREEINMICERMITMLENALTHPEHTIDELTLISDAEKEKLLARAGGKSVSYRKDMTIPELFQEKAELLSDHPAVVFEDRTLSYRTLHEQSARIANVLKQKGVGPDSPVAVLIERSERMITAIMGILKAGGAYVPIDPGFPAERIQYILEDCGADFILTESKVAAPEADAELIDLDQAIEEGAEESLNADVNARNLAYIIYTSGTTGRPKGVMIEHRQVHHLVESLQQTIYQSGSQTLRMALLAPFHFDASVKQIFASLLLGQTLYIVPKKTVTNGAALTAYYRKNSIEATDGTPAHLQMLAAAGDFEGLKLKHMLIGGEGLSSVVADKLLKLFKEAGTAPRLTNVYGPTETCVDASVHPVIPENAVQSAYVPIGKALGNNRLYILDQKGRLQPEGVAGELYIAGDGVGRGYLHLPELTEEKFLQDPFVPGDRMYRTGDVVRWLPDGTIEYLGREDDQVKVRGYRIELGEIEAVIQQAPDVAKAVVLARPDEQGNLEVCAYVVQKPGSEFAPAGLREHAARQLPDYMVPAYFTEVTEIPLTPSGKVDRRKLFALEVKAVSGTAYTAPRNETEKAIAAIWQDVLNVEKAGIFDNFFETGGHSLKAMTLLTKIHKETGIEIPLQFLFEHPTITALAEEADHRESKAFAVIEPAEKQEHYPLSLAQQRTYIVSQFEDAGVGYNMPAAAILEGPLDIQKLERAFQGLIRRHESLRTSFVLENSTPRQKIHDSVDFNIEMIERGGRSDEAIMASFVRTFDLAKAPLFRIGLLGLEENRHMLLFDMHHLISDGVSIGIMLEELARIYKGEQLPDLRLQYKDYAVWQSRQAAEGYKKDQAYWKEVFAGELPVLQLLSDYPRPPVQSFEGDRVSIKLDAGVKDRLNRLAEQNGATLYMVMLSAYYTLLSKYTGQDDIIVGTPSAGRNHSDTEGIIGMFVNTLAIRSEVKQNETFTQLISRVRKRVLDAFSHQDYPFEWLVEDLNIPRDVSRHPLFDTMFSLQNATEGIPAVGDLSLSVQETNFKIAKFDLTVQARETDEGIEIDVDYSTKLFKQSTADRLLTHFARLLEDAAADPEKPISEYKLLSEEEAASQIQQFNPGRTPYPKDKTIVQLFEEQAANTPDHTALQYEGESLTYRELNERANRLARGILSLGAGEGRTAAVLCERSMDMIVSILAVLKSGSAYVPIDPEHPIQRMQHFFRDSGAKVLLTQRKLKALAEEAEFKGVIVLADEEESYHADARNLALPLDSAAMANLTYTSGTTGTPKGNIVTHANILRTVKETNYLSITEQDTILGLSNYVFDAFMFDMFGSLLNGAKLVLIPKETVLDMARLSRVIERENISILMITTALFHLLVDLNPACLSTLRKIMFGGERASVEHVRKALQTVGKGKLLHMYGPSESTVFATYHPVDELEEHTLSVPIGKPVSNTEVYILDRTGHVQPAGIAGELCVSGEGLVKGYYNRPELTEEKFVPHPFTSGERMYKTGDLARWLPNGDIEFIGRIDHQVKIRGQRIELGEIEHQLQTHDRVQESVVLAVDQGAGDKLLCAYYVGEGDISSQEMREHAAKDLPAYMVPAVFIQMDELPLTGNGKIDRRALPIPDANVSRGVSYVAPRNGTEQKVADIWAQVLQAEQVGAYDHFFDIGGHSLAGMKMLALVHQELGVELSLKDLFQSPTVEGLAQVIASAEKGTAASISPAEKQDTYPVSSPQKRMYVLQQLEDAQTSYNMPAVLRLTGELDVERLNSVMQQLMQRHEALRTTFEIKDGETVQRIWEEAECEIAYFEAPEEETERIVSEFIKPFKIDQLPLFRIGLIKHSDTEHVLLFDMHHIISDGASVGVLIEELSKLYDGETLEPLRIQYKDYAVWQQQFIQSELYKKQEEHWLKELDGELPVLTLPTDYSRPAVQTFEGDRIAFSLEAGKADALRRLAKETDSTLYMVLLASYSAFLSKISGQDDIIVGSPVAGRSQADVSRVIGMFVNTLALRTYPKGEKTFADYLNEVKETALSAFDAQDYPLEDLIGNVQVQRDTSRNPLFDAVFSMQNANIKDLTMKGIQLEPHPFERKTAKFDLTLTADETDGGLTFVLEYNTALFKQETIERWKQYWMELLDAVTGNPNQPLSSLSLVTETEKQALLEAWKGKALPVPTDKTVHQLFEETAQRHKDRPAVTYNGQSWTYGELNAKANRLARILMDCGISPDDRVGVLTKPSLEMSAAVLGVLKAGAAFVPIDPDYPDQRIEYILQDSGAKLLLKQEGISVPDSYTGDVILLDGSRTILSLPLDENDEENPETAVTAENLAYMIYTSGTTGQPKGVMVEHHALVNLCFWHHDAFSMTAEDRSAKYAGFGFDASIWEMFPTWTIGAELHVIEEAIRLDIVRLNDYFETNGVTITFLPTQLAEQFMELENTSLRVLLTGGDKLKRAVKKPYTLVNNYGPTENTVVATSAEIHPEEGSLSIGRAIANTRVYILGEGNQVQPEGVAGELCVAGRGLARGYLNREDETAKRFVADPFVPGERMYRTGDLVKWTGGGIEYIGRIDQQVKVRGYRIELSEIEVQLAQLSEVQDAAVTAVKDKGGNTAIAAYVTPESADIEALKSALKETLPDYMIPAFWVTLNELPVTANGKVDRKALPEPDIEAGSGEYKAPTTDMEELLAGIWQDVLGMSEVGVTDNFFSLGGDSIKGIQMASRLNQHGWKLEMKDLFQHPTIEELTQYVERAEGKQADQGPVEGEVILTPIQRWFFEKNFTNKHHWNQSVMLHAKKGFDPERVEKTLQALIEHHDALRMVYREGQEDVIQYNRGLEAASAQLEVIQIEGQAADYEDRIEREAERLQSSIDLQEGGLLKAGLFQAEDGDHLLLAIHHLVVDGVSWRILLEDFAAVYTQLEQGNEPVLPQKTHSFAEYAERLQDFANSKAFLKEKEYWRQLEEQAVAAKLPKDRESGDQRMKHTKTIEFSLTAEETEQLTTKVHEAYHTEMNDILLTAFGLAMKEWTGQDRVSVHLEGHGREEIIEDLTISRTVGWFTSMYPMVLDMKHADDLGYQLKQMKEDIRHVPNKGVGYGILRYLTAPEHKEDVAFSIQPDVSFNYLGQFDEMSDAGLFTRSELPSGQSLSPETEKPNALDVVGYIENGKLTMSLAYHSLEFHEKTVQTFSDSFKAHLLRIIEHCLSQDGTELTPSDLGDDDLTLDELDKLMEIF", "sequence_length": 3587, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "66e045cc2c62f7df9e3f2f8f0b6b40e9ff3389a53eb862bde1107f77f9647c83", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P27206.json", "taxon_id": "224308", "uniprot_accession": "P27206", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "P27550", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/2-methylcitrate-cycle-i.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY0-42", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/2-methylcitrate-cycle-i.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P27550", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF13193", "PF16177" ], "protein_name": "Acetyl-coenzyme A synthetase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "90e540d19bb97c88cef7e2198bcd5b18e2afa8d2672157f4cc88e6b05c71daea", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSQIHKHTIPANIADRCLINPQQYEAMYQQSINVPDTFWGEQGKILDWIKPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDASQSKHISYKELHRDVCRFANTLLELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVITSDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQEGRDLWWHDLVEQASDQHQAEEMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGGFMITPLPGATELKAGSATRPFFGVQPALVDNEGNPLEGATEGSLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQAIAMPS", "sequence_length": 652, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "90e540d19bb97c88cef7e2198bcd5b18e2afa8d2672157f4cc88e6b05c71daea", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P27550.json", "taxon_id": "83333", "uniprot_accession": "P27550", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "P31552", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/l-carnitine-degradation-i.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PathBank:SMP0002051", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/l-carnitine-degradation-i.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/acid-thiol-ligase-activity-go0016878.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016878", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/acid-thiol-ligase-activity-go0016878.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/carnitine-coa-ligase-activity-go0051108.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051108", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/carnitine-coa-ligase-activity-go0051108.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/crotonobetaine-coa-ligase-activity-go0051109.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051109", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/crotonobetaine-coa-ligase-activity-go0051109.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/crotonobetaine-carnitine-coa-ligase-nf005947.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF005947", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/crotonobetaine-carnitine-coa-ligase-nf005947.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-fatty-acid-coa-ligase-facl-fatty-acyl-coa-cd05934.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05934", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-fatty-acid-coa-ligase-facl-fatty-acyl-coa-cd05934.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P31552", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Crotonobetaine/carnitine--CoA ligase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3a0ccba62e10be02999148a60ff1681f30f4eb4993a09c8b16350d1b0f41eb7b", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLCEESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATVTECIPMMIRTLMVQPPSANDQQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFCYEAEIRDDHNRPLPAGEIGEICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEDFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK", "sequence_length": 517, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3a0ccba62e10be02999148a60ff1681f30f4eb4993a09c8b16350d1b0f41eb7b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P31552.json", "taxon_id": "83333", "uniprot_accession": "P31552", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "P37353", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/superpathway-of-menaquinol-8-biosynthesis-i.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY-5838", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/superpathway-of-menaquinol-8-biosynthesis-i.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P37353", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "2-succinylbenzoate--CoA ligase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "236752031e5ecb397ef6e20ea19b9f75609f3a300040ac088ac8c5b9d7707a1a", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/acetyl-coa-biosynthetic-process-go0006085.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/acetate-coa-ligase-nf003313.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF003313", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/acetate-coa-ligase-nf003313.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-acetyl-coa-synthetase-like-family-acs-thi-cd05969.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-acetyl-coa-synthetase-like-family-acs-thi-cd05969.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P39062", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Acetyl-coenzyme A synthetase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "02d4454392c525d55600f6cffdbc497aee290675facf209b1f714e3e01664b35", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"MRNNDNIRILTNPSVSHGEPLHISEKQPATIPEVLYRTATELGDTKGIIYLQPDGTEVYQSYRRLWDDGLRIAKGLRQSGLKAKQSVILQLGDNSQLLPAFWGCVLTGVVPAPLAVPPTYAESSSGTQKLKDAWTLLDKPAVITDRGMHQEMLDWAKEQGLEGFRAIIVEDLLSAEADTDWHQSSPEDLALLLLTSGSTGTPKAVMLNHRNIMSMVKGIIQMQGFTREDITFNWMPFDHVGGIGMLHLRDVYLGCQEINVSSETILMEPLKWLDWIDHYRASVTWAPNFAFGLVTDFAEEIKDKKWDLSSMRYMLNGGEAMVAKVGRRILELLEPHGLPADAIRPAWGMSETSSGVIFSHEFTRAGTSDDDHFVEIGSPIPGFSMRIVNDHNELVEEGEIGRFQVSGLSVTSGYYQRPDLNESVFTEDGWFETGDLGFLRNGRLTITGRTKDAIIINGINYYSHAIESAVEELPEIETSYTAACAVRLGQNSTDQLAIFFVTSAKLNDEQMSQLLRNIQSHVSQVIGVTPEYLLPVQKEEIPKTAIGKIQRTQLKTSFENGEFDHLLHKPNRMNDAVQDEGIQQADQVKRVREEIQKHLLTCLTEELHVSHDWVEPNANIQSLGVNSIKMMKLIRSIEKNYHIKLTAREIHQYPTIERLASYLSEHEDLSSLSADKKGTDTYKTEPERSQATFQPLSEVQKGLWTLQKMSPEKSAYHVPLCFKFSSGLHHETFQQAFGLVLNQHPILKHVIQEKDGVPFLKNEPALSIEIKTENISSLKESDIPAFLRKKVKEPYVKENSPLVRVMSFSRSEQEHFLLVVIHHLIFDGVSSVTFIRSLFDTYQLLLKGQQPEKAVSPAIYHDFAAWEKNMLAGKDGVKHRTYWQKQLSGTLPNLQLPNVSASSVDSQFREDTYTRRLSSGFMNQVRTFAKEHSVNVTTVFLSCYMMLLGRYTGQKEQIVGMPAMVRPEERFDDAIGHFLNMLPIRSELNPADTFSSFISKLQLTILDGLDHAAYPFPKMVRDLNIPRSQAGSPVFQTAFFYQNFLQSGSYQSLLSRYADFFSVDFVEYIHQEGEYELVFELWETEEKMELNIKYNTGLFDAASISAMFDHFVYVTEQAMLNPSQPLKEYSLLPEAEKQMILKTWNATGKTYPYITFHELFEQQAKKTPDRAAVSYEGQTLTYRELDEKSTQLAIYLQAHGVGPDRLAGIYVDRSLDMLVGLLAILKAGGAYVPLDPSYPAERLEYMLEDSEVFITLTTSELVNTLSWNGVTTALLDQDWDEIAQTASDRKVLTRTVTPENLAYVIYTSGSTGKPKGVMIPHKALTNFLVSMGETPGLTAEDKMLAVTTYCFDIAALELFLPLIKGAHCYICQTEHTKDVEKLKRDIRAIKPTVMQATPATWKMLFYSGWENEESVKILCGGEALPETLKRYFLDTGSEAWNMFGPTETTIWSAVQRINVECSHATIGRPIANTQIYITDSQLAPVPAGVPGELCIAGDGVAKGYYKKEELTDSRFIDNPFEPGSKLYRTGDMARWLTGGRIEYIGRIDNQVKIRGFRIELGDIESRLSEHPGILECVVVADMDNLAAYYTAKHANASLTARELRHFVKNALPAYMVPSYFIQLDHMPLTPNGKIDRNSLKNIDLSGEQLKQRQTSPKNIQDTVFTIWQEVLKTSDIEWDDGFFDVGGDSLLAVTVADRIKHELSCEFSVTDLFEYSTIKNISQYITEQRMGDASDHIPTDPAAHIEDQSTEMSDLPDYYDDSVAIIGISCEFPGAKNHDEFWENLRDGKESIAFFNKEELQRFGISKEIAENADYVPAKASIDGKDRFDPSFFQISPKDAEFMDPQLRMLLTHSWKAIEDAGYAARQIPQTSVFMSASNNSYRALLPSDTTESLETPDGYVSWVLAQSGTIPTMISHKLGLRGPSYFVHANCSSSLIGLHSAYKSLLSGESDYALVGGATLHTESNIGYVHQPGLNFSSDGHIKAFDASADGMIGGEGVAVVLLKKAADAVKDGDHIYALLRGIGVNNDGADKVGFYAPSVKGQADVVQQVMNQTKVQPESICYVEAHGTGTKLGDPIELAALTNVYRQYTNKTQFCGIGSVKTNIGHLDTAAGLAGCIKVVMSLYHQELAPSVNYKEPNPNTDLASSPFYVVDQKKTLSREIKTHRAALSSFGLGGTNTHAIFEQFKRDSDKGKIDGTCIVPISAKNKERLQEYAEDILAYLERRGFENSQLPDFAYTLQVGREAMEHRVVFIADHVNELKQRLTDFINGNTAIEGCFQGSKHNAREVSWLTEDEDSAELIRKWMAKGKVNKLAEMWSKGAHIDWMQLYKGERPNRMSLPTYPFAKERYWPSQDDRKPVAQISGNQTGIGSIHPLLHQNTSDFSEQKFSSVFTGDEFFLRDHVVRGKPVLPGVAYLEMAYAAINQAAGSEIGQDVRIRLNHTVWVQPVVVDRHSAQVDISLFPEEDGKITFDIYSTQEDGDDPVIHSQGSAELASAAETPVADLTEMSRRCGKGKMSPDQFYEEGRSRGMFHGPAFQGIKNVNIGNREVLAQLQLPEIVSGTNEQFVLHPSIMDSALQTATICIMQELTDQKLILPFALEELEVIKGCSSSMWAYARLSDSDHSGGVVQKADIDVIDESGTVCVRIKGFSTRVLEGEVHTSKPSTRHERLMLEPVWEKQNEEREDEDLSYTEHIIVLFETERSVTDSIASHMKDARVITLNEAVGHIAERYQCYMQNIFELLQSKVRKLSAGRIIIQAIVPLEKEKQLFAGVSGLFKTAEIEFSKLTAQVIEIEKPEEMIDLHLKLKDDSRRPFDKQIRYEAGYRFVKGWREMVLPSADTLHMPWRDEGVYLITGGAGSLGLLFAKEIANRTGRSTIVLTGRSVLSEDKENELEALRSIGAEVVYREADVSDQHAVRHLLEEIKERYGTLNGIIHGAGSSKDRFIIHKTNEEFQEVLQPKVSGLLHVDECSKDFPLDFFIFFSSVSGCLGNAGQADYAAANSFMDAFAEYRRSLAASKKRFGSTISFNWPLWEEGGMQVGAEDEKRMLKTTGMVPMPTDSGLKAFYQGIVSDKPQVFVMEGQLQKMKQKLLSAGSKAKRNDQRKADQDQGQTRKLEAALIQMVGAILKVNTDDIDVNTELSEYGFDSVTFTVFTNKINEKFQLELTPTIFFEYGSVQSLAEYVVAAYQGEWNQDATAKGKDERTNLVHSLSSLEASLSNMVSAILKVNSEDIDVNTELSEYGFDSVTFTVFTNKINEEFQLELTPTIFFEYGSLHSLAEYLTVEHGDTLVQEREKPEGQEELQTKSSEAPKITSRRKRRFTQPIIAKAERNKKQAADFEPVAIVGISGRFPGAMDIDEFWKNLEEGKDSITEVPKDRWDWREHYGNPDTDVNKTDIKWGGFIDGVAEFDPLFFGISPREADYVDPQQRLLMTYVWKALEDAGCSPQSLSGTGTGIFIGTGNTGYKDLFHRANLPIEGHAATGHMIPSVGPNRMSYFLNIHGPSEPVETACSSSLVAIHRAVTAMQNGDCEMAIAGGVNTILTEEAHISYSKAGMLSTDGRCKTFSADANGYVRGEGVGMVMLKKLEDAERDGNHIYGVIRGTAENHGGRANTLTSPNPKAQADLLVRAYRQADIDPSTVTYIEAHGTGTELGDPIEINGLKAAFKELSNMRGESQPDVPDHRCGIGSVKSNIGHLELAAGISGLIKVLLQMKHKTLVKSLHCETLNPYLQLTDSPFYIVQEKQEWKSVTDRDGNELPRRAGISSFGIGGVNAHIVIEEYMPKANSEHTATEQPNVIVLSAKNKSRLIDRASQLLEVIRNKKYTDQDLHRIAYTLQVGREEMDERLACVAGTMQELEEKLQAFVDGKEETDEFFRGQSHRNKETQTIFTADEDMALALDAWIRKRKYAKLADLWVKGVSIQWNTLYGETKPRLISLPSYPFAKDHYWVPAKEHSERDKKELVNAIEDRAACFLTKQWSLSPIGSAVPGTRTVAILCCQETADLAAEVSSYFPNHLLIDVSRIENDQSDIDWKEFDGLVDVIGCGWDDEGRLDWIEWVQRLVEFGHKEGLRLLCVTKGLESFQNTSVRMAGASRAGLYRMLQCEYSHLISRHMDAEEVTDHRRLAKLIADEFYSDSYDAEVCYRDGLRYQAFLKAHPETGKATEQSAVFPKDHVLLITGGTRGIGLLCARHFAECYGVKKLVLTGREQLPPREEWARFKTSNTSLAEKIQAVRELEAKGVQVEMLSLTLSDDAQVEQTLQHIKRTLGPIGGVIHCAGLTDMDTLAFIRKTSDDIQRVLEPKVSGLTTLYRHVCNEPLQFFVLFSSVSAIIPELSAGQADYAMANSYMDYFAEAHQKHAPIISVQWPNWKETGMGEVTNQAYRDSGLLSITNSEGLRFLDQIVSKKFGPVVLPAMANQTNWEPELLMKRRKPHEGGLQEAALQSPPARDIEEADEVSKCDGLLSETQSWLIDLFTEELRIDREDFEIDGLFQDYGVDSIILAQVLQRINRKLEAALDPSILYEYPTIQRFADWLIGSYSERLSALFGGRISDASAPLENKIEAEASVPGKDRALTPQIQAPAILSPDSHAEGIAVVGLSCRFPGAETLESYWSLLSEGRSSIGPIPAERWGCKTPYYAGVIDGVSYFDPDFFLLHEEDVRAMDPQALLVLEECLKLLYHAGYTPEEIKGKPVGVYIGGRSQHKPDEDSLDHAKNPIVTVGQNYLAANLSQFFDVRGPSVVVDTACSSALVGMNMAIQALRGGDIQSAIVGGVSLLSSDASHRLFDRRGILSKHSSFHVFDERADGVVLGEGVGMVMLKTVKQALEDGDIIYAVVKAASVNNDGRTAGPATPNLEAQKEVMKDALFKSGKKPEDISYLEANGSGSIVTDLLELKAIQSVYRSGHSSPLSLGSIKPNIGHPLCAEGIASFIKVVLMLKERRFVPFLSGEKEMAHFDQQKANITFSRALEKWTDSQPTAAINCFADGGTNAHVIVEAWEKDEKHAIKRSPISPPQLKKRMLSPGEPKLEAETSKMTAANIWDTYEVEV", "sequence_length": 5043, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "39057b8c490ac584fac926bed00b93a6127bb419aac50bf1c1d97299c48a2647", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P40806.json", "taxon_id": "224308", "uniprot_accession": "P40806", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/2-3-dihydroxybenzoate-aryl-carrier-protein-ligase-activity-go0008668.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/2-3-dihydroxybenzoate-aryl-carrier-protein-ligase-activity-go0008668.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/siderophore-biosynthetic-process-go0019290.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0019290", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/siderophore-biosynthetic-process-go0019290.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/2-3-dihydroxybenzoyl-adenylate-synthase-tigr02275.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR02275", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/2-3-dihydroxybenzoyl-adenylate-synthase-tigr02275.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/2-3-dihydroxybenzoate-amp-ligase-2-3-dihydroxybenzoate-amp-ligase-acti-cd05920.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05920", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/2-3-dihydroxybenzoate-amp-ligase-2-3-dihydroxybenzoate-amp-ligase-acti-cd05920.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "2,3-dihydroxybenzoate-AMP ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKGFTPWPDELAETYRKNGCWAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQMDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHAEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDEMRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAGFKK", "sequence_length": 539, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2cb07ff5065251478791db48c72e2e23a86338013c842d43b2d8596db2b5a0b5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P40871.json", "taxon_id": "224308", "uniprot_accession": "P40871", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "P52910", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/ethanol-degradation.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "gomodel:YeastPathways_PWY3O-4300", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/ethanol-degradation.yaml" } ], "pfam_ids": [ "PF00501", "PF13193", "PF16177" ], "protein_name": "Acetyl-coenzyme A synthetase 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIKEHKVVYEAHNVKALKAPQHFYNSQPGKGYVTDMQHYQEMYQQSINEPEKFFDKMAKEYLHWDAPYTKVQSGSLNNGDVAWFLNGKLNASYNCVDRHAFANPDKPALIYEADDESDNKIITFGELLRKVSQIAGVLKSWGVKKGDTVAIYLPMIPEAVIAMLAVARIGAIHSVVFAGFSAGSLKDRVVDANSKVVITCDEGKRGGKTINTKKIVDEGLNGVDLVSRILVFQRTGTEGIPMKAGRDYWWHEEAAKQRTYLPPVSCDAEDPLFLLYTSGSTGSPKGVVHTTGGYLLGAALTTRYVFDIHPEDVLFTAGDVGWITGHTYALYGPLTLGTASIIFESTPAYPDYGRYWRIIQRHKATHFYVAPTALRLIKRVGEAEIAKYDTSSLRVLGSVGEPISPDLWEWYHEKVGNKNCVICDTMWQTESGSHLIAPLAGAVPTKPGSATVPFFGINACIIDPVTGVELEGNDVEGVLAVKSPWPSMARSVWNHHDRYMDTYLKPYPGHYFTGDGAGRDHDGYYWIRGRVDDVVNVSGHRLSTSEIEASISNHENVSEAAVVGIPDELTGQTVVAYVSLKDGYLQNNATEGDAEHITPDNLRRELILQVRGEIGPFASPKTIILVRDLPRTRSGKIMRRVLRKVASNEAEQLGDLTTLANPEVVPAIISAVENQFFSQKKK", "sequence_length": 683, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9681fa7c587225c789308788be9eecfcdab72dc6da83b8ad2b0d9ac68757a93e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P52910.json", "taxon_id": "559292", "uniprot_accession": "P52910", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/coa-ligase-activity-go0016405.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016405", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/coa-ligase-activity-go0016405.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/decanoate-coa-ligase-activity-go0102391.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0102391", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/decanoate-coa-ligase-activity-go0102391.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/long-chain-fatty-acid-coa-ligase-activity-go0004467.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0004467", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/long-chain-fatty-acid-coa-ligase-activity-go0004467.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/oleic-acid-binding-go0070538.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070538", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/oleic-acid-binding-go0070538.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/acyl-coa-metabolic-process-go0006637.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0006637", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/acyl-coa-metabolic-process-go0006637.yaml" }, { 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"data/traits/sequence/domain/interpro/amp-dependent-synthetase-ligase-domain-ipr000873.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR000873", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/amp-dependent-synthetase-ligase-domain-ipr000873.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/amp-binding-enzyme-domain-superfamily-ipr045851.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045851", "section": "canonical_examples", "url": 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"data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P69451", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Long-chain-fatty-acid--CoA ligase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "87504ba8fe2f6804438a83a2e15deff5a529bf771b45920f689b4250793dd0ce", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYADQPAFVNMGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVVNVNPLYTPRELEHQLNDSGASAIVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLSTAKGTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELGGQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA", "sequence_length": 561, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "87504ba8fe2f6804438a83a2e15deff5a529bf771b45920f689b4250793dd0ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P69451.json", "taxon_id": "83333", "uniprot_accession": "P69451", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "P77495", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/2-methylcitrate-cycle-i.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY0-42", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/2-methylcitrate-cycle-i.yaml" } ], "pfam_ids": [ "PF00501", "PF13193", "PF16177" ], "protein_name": "Propionate--CoA ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFSEFYQRSINEPEQFWAEQARRIDWQTPFTQTLDHSNPPFARWFCEGRTNLCHNAIDRWLEKQPEALALIAVSSETEEERTFTFRQLHDEVNAVASMLRSLGVQRGDRVLVYMPMIAEAHITLLACARIGAIHSVVFGGFASHSVAARIDDAKPVLIVSADAGARGGKIIPYKKLLDDAISQAQHQPRHVLLVDRGLAKMARVSGRDVDFASLRHQHIGARVPVAWLESNETSCILYTSGTTGKPKGVQRDVGGYAVALATSMDTIFGGKAGSVFFCASDIGWVVGHSYIVYAPLLAGMATIVYEGLPTWPDCGVWWTIVEKYQVSRMFSAPTAIRVLKKFPTAEIRKHDLSSLEVLYLAGEPLDEPTASWVSNTLDVPVIDNYWQTESGWPIMAIARGLDDRPTRLGSPGVPMYGYNVQLLNEVTGEPCGVNEKGMLVVEGPLPPGCIQTIWGDDGRFVKTYWSLFSRPVYATFDWGIRDADGYHFILGRTDDVINVAGHRLGTREIEESISSHPGVAEVAVVGVKDALKGQVAVAFVIPKESDSLEDRDVAHSQEKAIMALVDSQIGNFGRPAHVWFVSQLPKTRSGKMLRRTIQAICEGRDPGDLTTIDDPASLDQIRQAMEE", "sequence_length": 628, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e3954c5ecb19620d2f20a9a3941065c02f89b68ffab29db264178808045690c2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P77495.json", "taxon_id": "83333", "uniprot_accession": "P77495", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/prokaryotic-long-chain-fatty-acid-coa-synthetases-similar-to-escherich-cd05936.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/prokaryotic-long-chain-fatty-acid-coa-synthetases-similar-to-escherich-cd05936.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Long-chain-fatty-acid--CoA ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQSQKPWLAEYPNDIPHELPLPNKTLQSILTDSAARFPDKTAISFYGKKLTFHDILTDALKLAAFLQCNGLQKGDRVAVMLPNCPQTVISYYGVLFAGGIVVQTNPLYTEHELEYQLRDAQVSVIITLDLLFPKAIKMKTLSIVDQILITSVKDYLPFPKNILYPLTQKQKVHIDFDKTANIHTFASCMKQEKTELLTIPKIDPEHDIAVLQYTGGTTGAPKGVMLTHQNILANTEMCAAWMYDVKEGAEKVLGIVPFFHVYGLTAVMNYSIKLGFEMILLPKFDPLETLKIIDKHKPTLFPGAPTIYIGLLHHPELQHYDLSSIKSCLSGSAALPVEVKQKFEKVTGGKLVEGYGLSEASPVTHANFIWGKNKPGSIGCPWPSTDAAIYSEETGELAAPYEHGEIIVKGPQVMKGYWNKPEETAAVLRDGWLFTGDMGYMDEEGFFYIADRKKDIIIAGGYNIYPREVEEALYEHEAIQEIVVAGVPDSYRGETVKAFVVLKKGAKADTEELDAFARSRLAPYKVPKAYEFRKELPKTAVGKILRRRLLEEETENHHIK", "sequence_length": 560, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3af06b078e4fe6a2ed2edab3cf1ef0d6977e0920700200aae362511d16d523df", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P94547.json", "taxon_id": "224308", "uniprot_accession": "P94547", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/acid-thiol-ligase-activity-go0016878.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016878", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/acid-thiol-ligase-activity-go0016878.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Putative acyl--CoA ligase YdaB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METLQHLILHDMPNSEEIEAVKSGDHTLTYKGYRKRINQLANAMLQKGIQKGDRVALLCKNGHPASTVMFAALEIGAVVVPVSWQLKPYEMTGILKASEPKAMFYGAEFKEILDEVLPELSSLCVTMETGTAYETSAEFEALFAGPDHLPETEMVSPDDTALLMFTSGTTGNPKRCMITHGGIYRYVKKSNSSIARMKGLRFLACHPIYHTSALICIMLGTFAETTFVFTKDQDPVHMLKVIEEEKIQTVMALPVFYTYLLEAWEKHQTDLSSLVILMTGGTKVPSSLISRYLDIGIPLAHGYGSTEAWGISTWTPDMGMDKAASAGKPVAGVKVKVEDPLTGEELPQGEIGEIVVHTPFLFKGYEDNPEATAKVLQNGWFRTGDSGYVDEDGFIFITGRYKDVIIYGGDNVYPDQVEEVIQQIPGILETAVVGIPDPLYGEKPKAFIVKNGGQRITEEDVIAFCKERLSAYKIPEVEFVNELPKNNLGKVKKDVLRNQAVHS", "sequence_length": 503, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6a2f8bee07c57d97cc1c2bb154a488420c4e52777db74d6fc38e2dbc3b70671c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P96575.json", "taxon_id": "224308", "uniprot_accession": "P96575", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "Q01574", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/ethanol-degradation.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "gomodel:YeastPathways_PWY3O-4300", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/ethanol-degradation.yaml" } ], "pfam_ids": [ "PF00501", "PF13193", "PF16177" ], "protein_name": "Acetyl-coenzyme A synthetase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSPSAVQSSKLEEQSSEIDKLKAKMSQSAATAQQKKEHEYEHLTSVKIVPQRPISDRLQPAIATHYSPHLDGLQDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLIDSVKL", "sequence_length": 713, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "15354f336a64cc880160080ad76d98643eb0ed20630d49cbd1ba54cb3718c305", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q01574.json", "taxon_id": "559292", "uniprot_accession": "Q01574", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/condensation-pf00668.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/condensation-pf00668.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF00975", "PF13193" ], "protein_name": "Surfactin synthase subunit 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQFSKDQVQDMYYLSPMQEGMLFHAILNPGQSFYLEQITMKVKGSLNIKCLEESMNVIMDRYDVFRTVFIHEKVKRPVQVVLKKRQFHIEEIDLTHLTGSEQTAKINEYKEQDKIRGFDLTRDIPMRAAIFKKAEESFEWVWSYHHIILDGWCFGIVVQDLFKVYNALREQKPYSLPPVKPYKDYIKWLEKQDKQASLRYWREYLEGFEGQTTFAEQRKKQKDGYEPKELLFSLSEAETKAFTELAKSQHTTLSTALQAVWSVLISRYQQSGDLAFGTVVSGRPAEIKGVEHMVGLFINVVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYDIQSQADQPKLIDHIIVFENYPLQDAKNEESSENGFDMVDVHVFEKSNYDLNLMASPGDEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDREREFLLTGLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEEWIGPRNEMEETIAQIWSEVLGRKQIGIHDDFFALGGHSLKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNGGSDGLQDVTIMNQDQEQIIFAFPPVLGYGLMYQNLSSRLPSYKLCAFDFIEEEDRLDRYADLIQKLQPEGPLTLFGYSAGCSLAFEAAKKLEEQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKHGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDMPEWLASWEEATTGVYRVKRGFGTHAEMLQGETLDRNAEILLEFLNTQTVTVS", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/decanoate-coa-ligase-activity-go0102391.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/fatty-acid-ligase-activity-go0015645.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015645", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/fatty-acid-ligase-activity-go0015645.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Trichormus variabilis (strain ATCC 29413 / PCC 7937)", "origins": [ { "cited_uniprot_accession": "Q3M6C6", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/unclassified/shinorine.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:131712", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/unclassified/shinorine.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00975", "PF13193" ], "protein_name": "Amino acid adenylation", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": 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"fc7552def0a5359cd2b1aa21a286c862b2b83676697991f2b34181c432ac281b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3M6C6.json", "taxon_id": "240292", "uniprot_accession": "Q3M6C6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/2-methylbutanoate-coa-ligase-activity-go0043759.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0043759", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/2-methylbutanoate-coa-ligase-activity-go0043759.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/propionate-coa-ligase-activity-go0050218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/propionate-coa-ligase-activity-go0050218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/propionate-coa-transferase-activity-go0018729.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0018729", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/propionate-coa-transferase-activity-go0018729.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/eukaryotic-medium-chain-acyl-coa-synthetase-macs-or-acsm-macs-catalyze-cd05928.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05928", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/eukaryotic-medium-chain-acyl-coa-synthetase-macs-or-acsm-macs-catalyze-cd05928.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Acyl-coenzyme A synthetase ACSM3, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVMLLRARCFQRLAIPDPMRVLYKDYRTATPQNFSNYESMKQDFKIEIPEYFNFAKDVLDQWTNMEKAGKRLSNPAFWWIDGNGEELRWSFEELGLLSRKFANILTEACSLQRGDRVMVILPKIPEWWLANVACLRTGTVLIPGTTQLTQKDILYRLQSSKAKCIITDDTLAPAVDAVAAKCENLHSKLIVSQHSREGWGNLKEMMKYASDSHTCVDTKHDEMMAIYFTSGTTGPPKMIGHTHSSFGLGLSVNGRFWLDLIASDVMWNTSDTGWAKSAWSSVFSPWTQGACVFAHYLPRFESTSILQTLSKFPITVFCSAPTAYRMLVQNDMSSYKFNSLKHCVSAGEPINPEVMEQWRKKTGLDIYEGYGQTETVLICGNFKGMKIKPGSMGKPSPAFDVKILDENGATLPPGQEGDIALQVLPERPFGLFTHYVDNPSKTASTLRGSFYITGDRGYMDEDGYFWFVARSDDIILSSGYRIGPFEVESALIEHPSIAESAVVSSPDPIRGEVVKAFIVLNPDYKSHDQEQLKKEIQEHVKKTTAPYKYPRKVEFIEELPKTVSGKVKRNELRKKEWVTT", "sequence_length": 580, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7ffb53c6b1ee2f65b3db4bea8c74bb9c1b67492d85f70c271617c5366e19ae71", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UNX5.json", "taxon_id": "10090", "uniprot_accession": "Q3UNX5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/malonate-catabolic-process-go0090410.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/malonyl-coa-synthetase-mcs-mcs-catalyzes-the-formation-of-malonyl-coa--cd05941.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05941", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/malonyl-coa-synthetase-mcs-mcs-catalyzes-the-formation-of-malonyl-coa--cd05941.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Malonate--CoA ligase ACSF3, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPHLALPFRRLFWSLASSQLIPRRHRGHSLLPTTPEAHTDGSVPVFIRALAFGDRIALIDKYGHHTYRELYDRSLCLAQEICRLQGCKVGDLQEERVSFLCSNDVSYVVAQWASWMSGGVAVPLYWKHPEAQLEYFIQDSRSSLVVVGQEYLERLSPLAQRLGVPLLPLTPAVYHGATEKPTEQPVEESGWRDRGAMIFYTSGTTGRPKGALSTHRNLAAVVTGLVHSWAWTKNDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQQVWEKFLSSEAPQITVFMAVPTVYSKLLDYYDKHFTQPHVQDFVRAVCKERIRLMVSGSAALPVPLLEKWRSATGHTLLERYGMTEIGMALSNPLTEARVPGSVGTPLPGVEVRIISENPQKGSPYIIHAEGNERGTKVTPGFEEKEGELLVRGPSVFREYWDKPEETKSAFTSDGWFRTGDTAVFKDARYWIRGRTSVDIIKTGGYKVSALEIERHLLAHPSITDVAVIGVPDMTWGQRVTAVVALQEGHSLSHGDLKEWARGVLAPYAVPSELLLVEEIPRNQMGKVNKKELLKQLYPSGQRSQPGQG", "sequence_length": 583, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87603a0e0224b7fbe62f05c931f1bc6a0dee77adc2d7f893cb4386be9b657332", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3URE1.json", "taxon_id": "10090", "uniprot_accession": "Q3URE1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/4-coumarate-coa-ligase-activity-go0016207.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016207", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/4-coumarate-coa-ligase-activity-go0016207.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/e-caffeate-coa-ligase-activity-go0106286.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0106286", "section": "canonical_examples", "url": 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"https://rest.uniprot.org/uniprotkb/Q42524.json", "taxon_id": "3702", "uniprot_accession": "Q42524", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/malonyl-coa-synthetase-activity-go0090409.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090409", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/malonyl-coa-synthetase-activity-go0090409.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/malonate-catabolic-process-go0090410.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090410", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/malonate-catabolic-process-go0090410.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/malonyl-coa-synthetase-mcs-mcs-catalyzes-the-formation-of-malonyl-coa--cd05941.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05941", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/malonyl-coa-synthetase-mcs-mcs-catalyzes-the-formation-of-malonyl-coa--cd05941.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Malonate--CoA ligase ACSF3, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPHVVLTFRRLGCALASCRLAPARHRGSGLLHTAPVARSDRSAPVFTRALAFGDRIALVDQHGRHTYRELYSRSLRLSQEICRLCGCVGGDLREERVSFLCANDASYVVAQWASWMSGGVAVPLYRKHPAAQLEYVICDSQSSVVLASQEYLELLSPVVRKLGVPLLPLTPAIYTGAVEEPAEVPVPEQGWRNKGAMIIYTSGTTGRPKGVLSTHQNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNALLCPLWVGATCVMMPEFSPQQVWEKFLSSETPRINVFMAVPTIYTKLMEYYDRHFTQPHAQDFLRAVCEEKIRLMVSGSAALPLPVLEKWKNITGHTLLERYGMTEIGMALSGPLTTAVRLPGSVGTPLPGVQVRIVSENPQREACSYTIHAEGDERGTKVTPGFEEKEGELLVRGPSVFREYWNKPEETKSAFTLDGWFKTGDTVVFKDGQYWIRGRTSVDIIKTGGYKVSALEVEWHLLAHPSITDVAVIGVPDMTWGQRVTAVVTLREGHSLSHRELKEWARNVLAPYAVPSELVLVEEIPRNQMGKIDKKALIRHFHPS", "sequence_length": 576, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9b23a9c38ce64f20a7ee20eadde68f964f7f5022b3923ae7cf4d314728ea0eba", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q4G176.json", "taxon_id": "9606", "uniprot_accession": "Q4G176", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)", "origins": [ { "cited_uniprot_accession": "Q4KCY5", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/pyoluteorin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:156453", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/pyoluteorin.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "L-proline--[L-prolyl-carrier protein] ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLLHERMMHSLARYPRQTAVVDEQDALSYEALELRIREFVAMLCALGVGQGQRILLWAHKSVDLVAVMQAALRLGVVYVPVDPLSPVSRLEKIAGDSQAVLVLCTAARLEELAGSALAQVRSVVLDDPASAGYWRNIDTGSSVVPTLAIQPDDLAYILYTSGSTGVPKGVALSHGNALAFVDWACERYCFQPGERFANHAPLHFDLSVLDIYCALNVGATVCLVPESIAFSPRLLTDFIRQHEISIWYSVPSVLMMMMQDGDLLSDIQDTLRVLLFAGEPFPVKHLRDLRAAYADVRLANLFGPTETNVCTAFEVGAIDPERVLPVPIGTAASGNQVWAQKPDGSRCAVGEEGELVVQGPTVMLGYFAKPAQEGPYKTGDMVRQRPDGNYEYLGRRDDMLKVRGNRIERGEVEAALLAHPQVSEAAVLVVGEGMNAQLWGVLVAHTRDALSLIDLKRHCAQRLPRYMIIDKVLCLDALPRNANGKVDRFALARQVEG", "sequence_length": 498, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4068e080a4342fe136dacc81d0827886ec94a5895b7368a87eda7aa592c2ef3f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4KCY5.json", "taxon_id": "220664", "uniprot_accession": "Q4KCY5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/cholate-coa-ligase-activity-go0047747.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0047747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/cholate-coa-ligase-activity-go0047747.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/ketone-body-biosynthetic-process-go0046951.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0046951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/ketone-body-biosynthetic-process-go0046951.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/long-chain-fatty-acid-import-across-plasma-membrane-go0015911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/long-chain-fatty-acid-import-across-plasma-membrane-go0015911.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/fatty-acid-transport-proteins-fatp-including-hsfatp2-hsfatp5-and-hsfat-cd05938.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/fatty-acid-transport-proteins-fatp-including-hsfatp2-hsfatp5-and-hsfat-cd05938.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Long-chain fatty acid transport protein 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGIWKKLTLLLLLLLLVGLGQPPWPAAMALALRWFLGDPTCLVLLGLALLGRPWISSWMPHWLSLVGAALTLFLLPLQPPPGLRWLHKDVAFTFKMLFYGLKFRRRLNKHPPETFVDALERQALAWPDRVALVCTGSEGSSITNSQLDARSCQAAWVLKAKLKDAVIQNTRDAAAILVLPSKTISALSVFLGLAKLGCPVAWINPHSRGMPLLHSVRSSGASVLIVDPDLQENLEEVLPKLLAENIHCFYLGHSSPTPGVEALGASLDAAPSDPVPASLRATIKWKSPAIFIFTSGTTGLPKPAILSHERVIQVSNVLSFCGCRADDVVYDVLPLYHTIGLVLGFLGCLQVGATCVLAPKFSASRFWAECRQHGVTVILYVGEILRYLCNVPEQPEDKIHTVRLAMGNGLRANVWKNFQQRFGPIRIWEFYGSTEGNVGLMNYVGHCGAVGRTSCILRMLTPFELVQFDIETAEPLRDKQGFCIPVEPGKPGLLLTKVRKNQPFLGYRGSQAESNRKLVANVRRVGDLYFNTGDVLTLDQEGFFYFQDRLGDTFRWKGENVSTGEVECVLSSLDFLEEVNVYGVPVPGCEGKVGMAAVKLAPGKTFDGQKLYQHVRSWLPAYATPHFIRIQDSLEITNTYKLVKSRLVREGFDVGIIADPLYILDNKAQTFRSLMPDVYQAVCEGTWNL", "sequence_length": 689, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2093b7d4248009755cebe1ba5c282a8be945f6ca9feaa58d7a193b1ae735bd1d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q4LDG0.json", "taxon_id": "10090", "uniprot_accession": "Q4LDG0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/2-methylbutanoate-coa-ligase-activity-go0043759.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0043759", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/2-methylbutanoate-coa-ligase-activity-go0043759.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/fatty-acid-ligase-activity-go0015645.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015645", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/fatty-acid-ligase-activity-go0015645.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/fatty-acyl-coa-synthase-activity-go0004321.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0004321", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/fatty-acyl-coa-synthase-activity-go0004321.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/propionate-coa-ligase-activity-go0050218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/propionate-coa-ligase-activity-go0050218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/propionate-coa-transferase-activity-go0018729.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0018729", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/propionate-coa-transferase-activity-go0018729.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/eukaryotic-medium-chain-acyl-coa-synthetase-macs-or-acsm-macs-catalyze-cd05928.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05928", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/eukaryotic-medium-chain-acyl-coa-synthetase-macs-or-acsm-macs-catalyze-cd05928.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/amp-binding-pf00501.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00501", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/amp-binding-pf00501.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/amp-binding.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00455", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/amp-binding.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Acyl-coenzyme A synthetase ACSM3, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLARVTRKMLRHAKCFQRLAIFGSVRALHKDNRTATPQNFSNYESMKQDFKLGIPEYFNFAKDVLDQWTDKEKAGKKPSNPAFWWINRNGEEMRWSFEELGSLSRKFANILSEACSLQRGDRVILILPRVPEWWLANVACLRTGTVLIPGTTQLTQKDILYRLQSSKANCIITNDVLAPAVDAVASKCENLHSKLIVSENSREGWGNLKELMKHASDSHTCVKTKHNEIMAIFFTSGTSGYPKMTAHTHSSFGLGLSVNGRFWLDLTPSDVMWNTSDTGWAKSAWSSVFSPWIQGACVFTHHLPRFEPTSILQTLSKYPITVFCSAPTVYRMLVQNDITSYKFKSLKHCVSAGEPITPDVTEKWRNKTGLDIYEGYGQTETVLICGNFKGMKIKPGSMGKPSPAFDVKIVDVNGNVLPPGQEGDIGIQVLPNRPFGLFTHYVDNPSKTASTLRGNFYITGDRGYMDKDGYFWFVARADDVILSSGYRIGPFEVENALNEHPSVAESAVVSSPDPIRGEVVKAFVVLNPDYKSHDQEQLIKEIQEHVKKTTAPYKYPRKVEFIQELPKTISGKTKRNELRKKEWKTI", "sequence_length": 586, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0b00363cb3fabfbcbc6d6b192ab32e1af2b5d543c8439f69489bb961679370dd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q53FZ2.json", "taxon_id": "9606", "uniprot_accession": "Q53FZ2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)", "origins": [ { "cited_uniprot_accession": "Q5B7J0", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/fellutamide-b.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-a7c02b2a6d", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/fellutamide-b.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Acyl-CoA ligase inpC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIFTPPVWGPEMMAIPASRPIHEFLVERDSRHLYDWSEEKPALTIADRVDALARSLGRELGWSPNTGSPWSKVVGIFSFNTLDFLVASWAIHRIGGICMLMHPTSSAAEIKRHIELTECRVLFTCRSLLPTANEVLVASKVQDPRAYLLDLPEELGRKPSLPDQGQQTVEQLISAGATLPLIEALDWAEGQGKEQVAYLCPTSGTSGLQESALTVKKLAMITHYNIIANIIQATTFEAGPKKGRTEVALGFLPLSHSYGLILAHLTAWRGDTYILHARFDMQAALASIEKYRIERLYLVPPIISALVNNPFLLDLCDTSSVTSVVTGSGPFGPRLAEALSRVRPSWQVLPGYGLTETAVIISITDPNITYPGADGCLVPGVEARLINSNGNEVEAYNEPGELLLKSPSIMKGYLGQETATREVFDEQGWLRTGDIAVFRLTGQDGKVTPHLDIVDRKKDIMKVKGLQVAPVEIESHLAAHPAVAEVAVVGVRDEDAGERPYAFIVRSPRTMADLDEEALKADLNRHVEATLSEPHWLRKNIRFVEEFPKSSNGKPLKYKLKESLATSYARKTSPAIPNNTRNR", "sequence_length": 583, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f5ff619fcfea5902a55bc3289972241ec8b644605f16595260c2f531dfe81cec", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5B7J0.json", "taxon_id": "227321", "uniprot_accession": "Q5B7J0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/fatty-acid-transport-proteins-fatp-including-hsfatp2-hsfatp5-and-hsfat-cd05938.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/fatty-acid-transport-proteins-fatp-including-hsfatp2-hsfatp5-and-hsfat-cd05938.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Long-chain fatty acid transport protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAALLLLPLLLLLPLLLLKLHLWPQLRWLPADLAFAVRALCCKRALRARALAAAAADPEGPEGGCSLAWRLAELAQQRAAHTFLIHGSRRFSYSEAERESNRAARAFLRALGWDWGPDGGDSGEGSAGEGERAAPGAGDAAAGSGAEFAGGDGAARGGGAAAPLSPGATVALLLPAGPEFLWLWFGLAKAGLRTAFVPTALRRGPLLHCLRSCGARALVLAPEFLESLEPDLPALRAMGLHLWAAGPGTHPAGISDLLAEVSAEVDGPVPGYLSSPQSITDTCLYIFTSGTTGLPKAARISHLKILQCQGFYQLCGVHQEDVIYLALPLYHMSGSLLGIVGCMGIGATVVLKSKFSAGQFWEDCQQHRVTVFQYIGELCRYLVNQPPSKAERGHKVRLAVGSGLRPDTWERFVRRFGPLQVLETYGLTEGNVATINYTGQRGAVGRASWLYKHIFPFSLIRYDVTTGEPIRDPQGHCMATSPGEPGLLVAPVSQQSPFLGYAGGPELAQGKLLKDVFRPGDVFFNTGDLLVCDDQGFLRFHDRTGDTFRWKGENVATTEVAEVFEALDFLQEVNVYGVTVPGHEGRAGMAALVLRPPHALDLMQLYTHVSENLPPYARPRFLRLQESLATTETFKQQKVRMANEGFDPSTLSDPLYVLDQAVGAYLPLTTARYSALLAGNLRI", "sequence_length": 683, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a2e2e08e0e1dda8602bff6c9873bc3788b7994dea1ef29e4cbf7b553a10283fe", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q5K4L6.json", "taxon_id": "9606", "uniprot_accession": "Q5K4L6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)", "origins": [ { "cited_uniprot_accession": "Q5LRT0", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/methylthiopropanoate-degradation-i.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY-6048", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/methylthiopropanoate-degradation-i.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "3-methylmercaptopropionyl-CoA ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"data/traits/sequence/domain/cdd/4-coumarate-coa-ligase-4cl-4-coumarate-coenzyme-a-ligase-is-a-key-enzy-cd05904.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/4-coumarate-coa-ligase-4cl-4-coumarate-coenzyme-a-ligase-is-a-key-enzy-cd05904.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "4-coumarate--CoA ligase-like 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAATHLHIPPNPKTQTSHQNPPFWFSSKTGIYTSKFPSLHLPVDPNLDAVSALFSHKHHGDTALIDSLTGFSISHTELQIMVQSMAAGIYHVLGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSSLGEIKKQVSECSVGLAFTSTENVEKLSSLGVSVISVSESYDFDSIRIENPKFYSIMKESFGFVPKPLIKQDDVAAIMYSSGTTGASKGVLLTHRNLIASMELFVRFEASQYEYPGSSNVYLAALPLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMALTKKAKGVCGEVFKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQGYGMTESTAVGTRGFNSEKLSRYSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGVMKGYLNNPKATQMSIVEDSWLRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQIAPADLEAVLVSHPLIIDAAVTAAPNEECGEIPVAFVVRRQETTLSEEDVISYVASQVAPYRKVRKVVMVNSIPKSPTGKILRKELKRILTNSVSSRL", "sequence_length": 566, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79e75bf5924b2fba54777d4805b8c90ba2e8e49660d8d244eb229774c42dea38", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q84P24.json", "taxon_id": "3702", "uniprot_accession": "Q84P24", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/4-coumarate-coa-ligase-4cl-4-coumarate-coenzyme-a-ligase-is-a-key-enzy-cd05904.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "4-coumarate--CoA ligase-like 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANSQRSSSLIDPRNGFCTSNSTFYSKRKPLALPSKESLDITTFISSQTYRGKTAFIDAATDHRISFSDLWMAVDRVADCLLHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVLTTANPLNTASEILRQIADSNPKLAFTTPELAPKIASSGISIVLERVEDTLRVPRGLKVVGNLTEMMKKEPSGQAVRNQVHKDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVARYIAEPFEQPQQTFICTVPLFHTFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVPPVLVTMINKADQIMKKYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQGYALTESNGAGASIESVEESRRYGAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKGYFRNEEEIITSEGWLKTGDLCYIDNDGFLFIVDRLKELIKYKGYQVPPAELEALLLNHPDILDAAVIPFPDKEAGQFPMAYVARKPESNLCEKKVIDFISKQVAPYKKIRKVAFIDSIPKTPSGKTLRKDLIKFAISKI", "sequence_length": 550, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "154093b7bbdea96a389e83cefa38d231f0c119d53bac0abe00daf0e0e010c3e6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q84P26.json", "taxon_id": "3702", "uniprot_accession": "Q84P26", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces roseochromogenus subsp. oscitans", "origins": [ { "cited_uniprot_accession": "Q8GHC3", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/shikimates_and_phenylpropanoids/clorobiocin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-619480541f", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/shikimates_and_phenylpropanoids/clorobiocin.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Amide synthetase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MANKDHGPEHYVTRILAEATRDGAQPVVRWRDTVITGTELHRSVQRVATALREAGVARDHAVAILTQVNSPWMLIVRYAAHLLGASVVYITGANHGTVTHDLPVTTRVRMLREAGASVLVFDERNAQLAETVNETVPDKLVLCGLGHPASGTVTVDGRPVEDVSVEFAPQAPELAMVLYTSGTTGQPKGVCRLFRSWNASVLGGAMHPRPAYLAMTAVSHTAGLIVDMALAAGGSVLLREKFDPGDFLRDVAQHRITETVMGVAQLYAILNHPDVRTADLSSLRHLLYLGCPASPERLQEAATVLPGVLAQSYGSTEAGRITVLREADHERPELLATVGQAMPGVTIAIRDPETGRDLPVNQIGEVVVHSPEAMGGYVADPEHTARVVRDGWVHTGDFGSVDERGYVRLFGRMHEMVKVQDTRVSPTEVEKVLVGCPGVVDACVYGHRRSDLIEELHAAVVLSTDGAPSFAALRDHVAQAMTPTHAPIRFVRWRQFPINNTGKVDRLRIREVSAEARGESPDVLVDR", "sequence_length": 527, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "80f91843f03d1674ca7014e814af9ec954de4e6c37e2a636723877535cb62f47", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8GHC3.json", "taxon_id": "149682", "uniprot_accession": "Q8GHC3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Agrobacterium tumefaciens", "origins": [ { "cited_uniprot_accession": "Q8GR99", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/agrobactin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-bb581c6679", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/agrobactin.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Probable 2,3-dihydroxybenzoate-AMP ligase protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MTIEFERWPEDFVRRYRERGYWTDRPLSGILTEQVERRPDATALICGDRRFSYADLDRQSSNLAGHLSAAGVGKGDTALVQLPNIAEFYLVFFALMKIGAAPVNALFSHRRLEMTSYAEQIAPKLVIASRSHELFADDAFVETLKAVSPKLAVTLLLGEADPQRSLERMLANSAENPPAYAPSASDEVALFQLSGGSTGTPKLIPRTHNDYDYSARASAEICELSPETRFLCAIPVAHNYPMSSPGALGVFHAGGTVVMAANPEPLACFDLIEKHEIDMVPLVPPAVALWLQAAPAHRERLKSLKLLQVGGASFAEALARQVPEVLGCDLQQVFGMAEGLVNYTRAGDPDHIVFTTQGRPISPDDEIRIVDEDGNDVPEGEAGMLATRGPYTFRGYYRAPEHSARVFDRDGFYYSGDVVQRTPEGYLRVVGRVKDQINRGGEKVASEEVENLILRHPDVTHAALVAMHDELLGEKSCVFVVSRNPALKAPAIRQHLAGLGVADYKLPDRVRFIEAMPLTAVGKIDKKRLRDLLVTPVAISA", "sequence_length": 541, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7a0f33d646e2121f5281ff20dbbbb33bdf2ab46b5a151fb078b00a5af52064b6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8GR99.json", "taxon_id": "358", "uniprot_accession": "Q8GR99", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/malonyl-coa-synthetase-activity-go0090409.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090409", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/malonyl-coa-synthetase-activity-go0090409.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/malonate-catabolic-process-go0090410.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090410", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/malonate-catabolic-process-go0090410.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/malonyl-coa-synthetase-mcs-mcs-catalyzes-the-formation-of-malonyl-coa--cd05941.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05941", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/malonyl-coa-synthetase-mcs-mcs-catalyzes-the-formation-of-malonyl-coa--cd05941.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Malonate--CoA ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTATTTLKSFNYLSLINHRLNHNSYAILSSPLLPRSHPASTSFSNSGFRFFQSNHLFSSQSGSLMEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEGFGSLKGARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLLLSTEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVYTSGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYARSLVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDSSAFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARNAGTVGKPLPGVEAKIKEDENDANGVGEICVKSPSLFKEYWNLPEVTKESFTEDGYFKTGDAGRVDEDGYYVILGRNSADIMKVGGYKLSALEIESTLLEHPTVAECCVLGLTDNDYGEAVTAIIIAESAAKKRREDESKPVITLEELCGWAKDKLAPYKLPTRLLIWESLPRNAMGKVNKKELKKSLENQE", "sequence_length": 608, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "17886a39bf4aa02c93f3873823605e93c487b45ab0f810623849b7739b5e1002", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8H151.json", "taxon_id": "3702", "uniprot_accession": "Q8H151", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/benzoate-coa-ligase-activity-go0018858.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0018858", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/benzoate-coa-ligase-activity-go0018858.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Acyl-coenzyme A synthetase ACSM2, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHHLWKIPRLFTLWGNEISCRTFHMNIKKLIPIQWGHQEAPAKFNFASDVIDHWASVEKAGKRSSGPALWWMNGSGKEIKWSFRELSEASKQTANVLSGACGLHRGDRVAVVLPRIPEWWLMILGCMRTGLVFMPGTIQMRSSDILYRLQASKARAIVAGDEVAQEVDAVAPDCSFLKIKLLVSENSREGWLNFKALLKEASTIHQCVETESRESAAIYFTSGTSGPPKMAEHSHCSLGIKAKMDAASWTGLSTSDIIWTISDTAWIMNILGAFLEPWVLGACIFVHLLPKFDSQTVLKVLSSYPINTLVGAPIIYRMLLQQDLSSYKFPHLHSCFSGGETLLPETLENWKAKTGLEIREIYGQTETGLICRVSRTMKVKPGYLGTAFAHYDVQVIDEQGNVLPPGKEGDIAIRVKPIWPIGMFSGYVDNPKKTQDNIRGDFWLMGDRGIKDPEGYFHFIGRSDDIINSSGYRIGPSEVENALMEHPAVSETAVISSPDPSRGEVVKAFVVLAPEFLSHDRDQLTKVLQEHVKSVTAPYKYPRKVEFVLDLPKTVTGKIERAKLRAKEWKTSGRA", "sequence_length": 575, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "92681b217d59d2fbae3434d6fd83df1c7484f93cd5bff1b7acfc4e27bd67ef9f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8K0L3.json", "taxon_id": "10090", "uniprot_accession": "Q8K0L3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-fatty-acid-coa-ligase-facl-fatty-acyl-coa-cd05917.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05917", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-fatty-acid-coa-ligase-facl-fatty-acyl-coa-cd05917.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Medium-chain acyl-CoA ligase ACSF2, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVYHGMLRFGRLCIASLGARGPRTLLSRPRPNSKLQSVRALSSGMVNCTNPLPIGGLSYIQGHTDSHLVNTTVGECLDATAQRFPDREALVILHENIRLNFAQLKEEVDKAASGLLSIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQSSELEYVLRKVGCKGIVFPKQFKTQQYYDILKQVCPELEKAQPGALKSERLPDLTTVISVDAPLPGTLLLDDIVAAGGKEQNLAQLRYNQRFLSCYDPINIQFTSGTTGNPKGATLSHHNIVNNSMLIGQRLKMPTKTAEELRLVLPSPLYHCLGSVGGTMVSMMHGATLLLSSPSFNGKKALEAISREKGTLLYGTPTMFVDILNQPDFSSYDFTSIRGGVIAGSPAPPELIRAIINKMNMKELVVVYGTTENSPVTFMNFPEDTLEQKAGSVGRIMPHTEAQIVNVETGELTNLNVPGELYIRGYCVMQGYWGEPQKTFETVGQDKWYRTGDIALMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFLKHPQVQEAQVVGVKDERMGEEICACIRLKSGETTTAEEIKAFCKGKISHFKIPRYIVFVEGYPLTISGKIQKFKLREQMEQHLKL", "sequence_length": 615, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "46faac4dffbee5984edcfac93e5ddc15dd87057a98e6e894f8c6b1f2d5ec2831", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VCW8.json", "taxon_id": "10090", "uniprot_accession": "Q8VCW8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chloroflexus aurantiacus", "origins": [ { "cited_uniprot_accession": "Q8VRG6", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/carbon-fixation-by-3-hydroxypropionate-cycle.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0043427", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/carbon-fixation-by-3-hydroxypropionate-cycle.yaml" }, { "cited_uniprot_accession": "Q8VRG6", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/glyoxylate-assimilation.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY-5744", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/glyoxylate-assimilation.yaml" } ], "pfam_ids": [ "PF00378", "PF00501", "PF13193", "PF16177" ], "protein_name": "acetate--CoA ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MIDTAPLAPPRAPRSNPIRDRVDWEAQRAAALADPGAFHGAIARTVIHWYDPQHHCWIRFNESSQRWEGLDAATGAPVTVDYPADYQPWQQAFDDSEAPFYRWFSGGLTNACFNEVDRHVTMGYGDEVAYYFEGDRWDNSLNNGRGGPVVQETITRRRLLVEVVKAAQVLRDLGLKKGDRIALNMPNIMPQIYYTEAAKRLGILYTPVFGGFSDKTLSDRIHNAGARVVITSDGAYRNAQVVPYKEAYTDQALDKYIPVETAQAIVAQTLATLPLTESQRQTIITEVEAALAGEITVERSDVMRGVGSALAKLRDLDASVQAKVRTVLAQALVESPPRVEAVVVVRHTGQEILWNEGRDRWSHDLLDAALAKILANARAAGFDVHSENDLLNLPDDQLIRALYASIPCEPVDAEYPMFIIYTSGSTGKPKGVIHVHGGYVAGVVHTLRVSFDAEPGDTIYVIADPGWITGQSYMLTATMAGRLTGVIAEGSPLFPSAGRYASIIERYGVQIFKAGVTFLKTVMSNPQNVEDVRLYDMHSLRVATFCAEPVSPAVQQFGMQIMTPQYINSYWATEHGGIVWTHFYGNQDFPLRPDAHTYPLPWVMGDVWVAETDESGTTRYRVADFDEKGEIVITAPYPYLTRTLWGDVPGFEAYLRGEIPLRAWKGDAERFVKTYWRRGPNGEWGYIQGDFAIKYPDGSFTLHGRSDDVINVSGHRMGTEEIEGAILRDRQITPDSPVGNCIVVGAPHREKGLTPVAFIQPAPGRHLTGADRRRLDELVRTEKGAVSVPEDYIEVSAFPETRSGKYMRRFLRNMMLDEPLGDTTTLRNPEVLEEIAAKIAEWKRRQRMAEEQQIIERYRYFRIEYHPPTASAGKLAVVTVTNPPVNALNERALDELNTIVDHLARRQDVAAIVFTGQGARSFVAGADIRQLLEEIHTVEEAMALPNNAHLAFRKIERMNKPCIAAINGVALGGGLEFAMACHYRVADVYAEFGQPEINLRLLPGYGGTQRLPRLLYKRNNGTGLLRALEMILGGRSVPADEALELGLIDAIATGDQDSLSLACALARAAIGADGQLIESAAVTQAFRHRHEQLDEWRKPDPRFADDELRSIIAHPRIERIIRQAHTVGRDAAVHRALDAIRYGIIHGFEAGLEHEAKLFAEAVVDPNGGKRGIREFLDRQSAPLPTRRPLITPEQEQLLRDQKELLPVGSPFFPGVDRIPKWQYAQAVIRDPDTGAAAHGDPIVAEKQIIVPVERPRANQALIYVLASEVNFNDIWAITGIPVSRFDEHDRDWHVTGSGGIGLIVALGEEARREGRLKVGDLVAIYSGQSDLLSPLMGLDPMAADFVIQGNDTPDGSHQQFMLAQAPQCLPIPTDMSIEAAGSYILNLGTIYRALFTTLQIKAGRTIFIEGAATGTGLDAARSAARNGLRVIGMVSSSSRASTLLAAGAHGAINRKDPEVADCFTRVPEDPSAWAAWEAAGQPLLAMFRAQNDGRLADYVVSHAGETAFPRSFQLLGEPRDGHIPTLTFYGATSGYHFTFLGKPGSASPTEMLRRANLRAGEAVLIYYGVGSDDLVDTGGLEAIEAARQMGARIVVVTVSDAQREFVLSLGFGAALRGVVSLAELKRRFGDEFEWPRTMPPLPNARQDPQGLKEAVRRFNDLVFKPLGSAVGVFLRSADNPRGYPDLIIERAAHDALAVSAMLIKPFTGRIVYFEDIGGRRYSFFAPQIWVRQRRIYMPTAQIFGTHLSNAYEILRLNDEISAGLLTITEPAVVPWDELPEAHQAMWENRHTAATYVVNHALPRLGLKNRDELYEAWTAGER", "sequence_length": 1822, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f95afbe0abb22a7d589cad25f760dfba6e21843e8d0387dd243eb8e86fb1c2f1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VRG6.json", "taxon_id": "1108", "uniprot_accession": "Q8VRG6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/medium-chain-fatty-acid-coa-ligase-activity-go0031956.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031956", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/medium-chain-fatty-acid-coa-ligase-activity-go0031956.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/o-succinylbenzoate-coa-ligase-activity-go0008756.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008756", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/o-succinylbenzoate-coa-ligase-activity-go0008756.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/phylloquinone-biosynthetic-process-go0042372.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/phylloquinone-biosynthetic-process-go0042372.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/adenylate-forming-domain-class-i-also-known-as-the-anl-superfamily-thi-cd04433.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd04433", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/adenylate-forming-domain-class-i-also-known-as-the-anl-superfamily-thi-cd04433.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8VYJ1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e8eb66461207de7cd8bde825826d87f7950b0b4cad09b5b392801e201d85f160", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MANHSRPHICQCLTRLASVKRNAVVTVYGNRKRTGREFVDGVLSLAAGLIRLGLRNGDVVSIAAFNSDLFLEWLLAVALVGGVVAPLNYRWSLKEAKMAMLLVEPVLLVTDETCVSWCIDVQNGDIPSLKWRVLMESTSTDFANELNQFLTTEMLKQRTLVPSLATYAWASDDAVVICFTSGTTGRPKGVTISHLAFITQSLAKIAIAGYGEDDVYLHTSPLVHIGGLSSAMAMLMVGACHVLLPKFDAKTALQVMEQNHITCFITVPAMMADLIRVNRTTKNGAENRGVRKILNGGGSLSSELLKEAVNIFPCARILSAYGMTEACSSLTFMTLHDPTQESFKVTYPLLNQPKQGTCVGKPAPHIELMVKLDEDSSRVGKILTRGPHTMLRYWGHQVAQENVETSESRSNEAWLDTGDIGAFDEFGNLWLIGRSNGRIKTGGENVYPEEVEAVLVEHPGIVSAVVIGVIDTRLGEMVVACVRLQEKWIWSDVENRKGSFQLSSETLKHHCRTQNLTGFKIPKRFVRWEKQFPLTTTGKVKRDEVRRQVLSHFQIMTSSL", "sequence_length": 560, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e8eb66461207de7cd8bde825826d87f7950b0b4cad09b5b392801e201d85f160", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VYJ1.json", "taxon_id": "3702", "uniprot_accession": "Q8VYJ1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/acetyl-coa-synthetase-activity-go0003987.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0003987", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/acetyl-coa-synthetase-activity-go0003987.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/acetate-metabolic-process-go0006083.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0006083", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/acetate-metabolic-process-go0006083.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/butyrate-metabolic-process-go0019605.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0019605", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/butyrate-metabolic-process-go0019605.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/acyl-coa-synthetase-nf006020.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF006020", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/acyl-coa-synthetase-nf006020.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/fatty-acyl-coa-synthetases-similar-to-lc-facs-from-thermus-thermophile-cd12118.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd12118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/fatty-acyl-coa-synthetases-similar-to-lc-facs-from-thermus-thermophile-cd12118.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Acetate/butyrate--CoA ligase AAE7, peroxisomal", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAATKWRDIDDLPKIPANYTALTPLWFLDRAAVVHPTRKSVIHGSREYTWRQTYDRCRRLASALADRSIGPGSTVAIIAPNIPAMYEAHFGVPMCGAVLNCVNIRLNAPTVAFLLSHSQSSVIMVDQEFFTLAEDSLRLMEEKAGSSFKRPLLIVIGDHTCAPESLNRALSKGAIEYEDFLATGDPNYPWQPPADEWQSIALGYTSGTTASPKGVVLHHRGAYIMALSNPLIWGMQDGAVYLWTLPMFHCNGWCFPWSLAVLSGTSICLRQVTAKEVYSMIAKYKVTHFCAAPVVLNAIVNAPKEDTILPLPHTVHVMTAGAAPPPSVLFSMNQKGFRVAHTYGLSETYGPSTVCAWKPEWDSLPPETQAKLNARQGVRYTGMEQLDVIDTQTGKPVPADGKTAGEIVFRGNMVMKGYLKNPEANKETFAGGWFHSGDIAVKHPDNYIEIKDRSKDVIISGGENISSVEVENVVYHHPAVLEASVVARPDERWQESPCAFVTLKSDYEKHDQNKLAQDIMKFCREKLPAYWVPKSVVFGPLPKTATGKIQKHILRTKAKEMGPVPRSRL", "sequence_length": 569, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "741317f42ac8b00eece6f20815f9605bd8db9a7a641bf7741920546cdc7a1ad4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VZF1.json", "taxon_id": "3702", "uniprot_accession": "Q8VZF1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/benzoate-coa-ligase-activity-go0018858.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0018858", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/benzoate-coa-ligase-activity-go0018858.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/fatty-acid-ligase-activity-go0015645.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0015645", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/fatty-acid-ligase-activity-go0015645.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Acyl-coenzyme A synthetase ACSM1, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQWLKSFQICKVLQGFSLSPTQLHRRLFSRVGAPRWNDHDSPEEFNFASDVLDYWAQMEEEGKRGPSPAFWWVNGQGDEIKWSFRKLRDLTCRTANVFEQICGLQQGDHLALILPRVPEWWLVTVGCMRTGIIFMPGTTQLKAKDILYRIQISRAKAIVTTASLVPEVESVASECPDLKTKLVVSDHSHEGWLDFCSLIKSASPDHTCIKSKMKDPMAIFFTSGTTGYPKMAKHNQGLAFRSYIPSCRKLLKLKTSDILWCMSDPGWILATVGCLIEPWTSGCTVFIHHLPQFDPKVIVEVLFKYPITQCLAAPGVYRMVLQQKTSNLRFPTLEHCTTGGESLLPEEYEQWKQRTGLSIHEVYGQSETGISSATLREMKIKRGSIGKAILPFDLQIIDEKGNILPPNTEGYIGIRIKPTRPLGLFMEYENSPESTSEVECGDFYNSGDRATIDEEGYIWFLGRGDDVINASGYRIGPVEVENALAEHPAVAESAVVSSPDKDRGEVVKAFIVLNPEFLSHDQEQLIKELQHHVKSVTAPYKYPRKVEFVSELPKTVTGKIKRKELRNKEFGQL", "sequence_length": 573, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b817d6ba68316db4badf599bfff7ff69fe382d9603234223dea9772254289fb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91VA0.json", "taxon_id": "10090", "uniprot_accession": "Q91VA0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-fatty-acid-coa-ligase-facl-fatty-acyl-coa-cd05917.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05917", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uncharacterized-subfamily-of-fatty-acid-coa-ligase-facl-fatty-acyl-coa-cd05917.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Medium-chain acyl-CoA ligase ACSF2, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVYVGMLRLGRLCAGSSGVLGARAALSRSWQEARLQGVRFLSSREVDRMVSTPIGGLSYVQGCTKKHLNSKTVGQCLETTAQRVPEREALVVLHEDVRLTFAQLKEEVDKAASGLLSIGLCKGDRLGMWGPNSYAWVLMQLATAQAGIILVSVNPAYQAMELEYVLKKVGCKALVFPKQFKTQQYYNVLKQICPEVENAQPGALKSQRLPDLTTVISVDAPLPGTLLLDEVVAAGSTRQHLDQLQYNQQFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSNILGERLKLHEKTPEQLRMILPNPLYHCLGSVAGTMMCLMYGATLILASPIFNGKKALEAISRERGTFLYGTPTMFVDILNQPDFSSYDISTMCGGVIAGSPAPPELIRAIINKINMKDLVVAYGTTENSPVTFAHFPEDTVEQKAESVGRIMPHTEARIMNMEAGTLAKLNTPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRLKDGEETTVEEIKAFCKGKISHFKIPKYIVFVTNYPLTISGKIQKFKLREQMERHLNL", "sequence_length": 615, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "df7d94323bb85cb5248aa0b4bfdc89346b01b31282dc0594c6f96f387f637bee", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96CM8.json", "taxon_id": "9606", "uniprot_accession": "Q96CM8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/butyrate-metabolic-process-go0019605.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0019605", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/butyrate-metabolic-process-go0019605.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/acyl-coa-synthetase-nf006020.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF006020", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/acyl-coa-synthetase-nf006020.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/fatty-acyl-coa-synthetases-similar-to-lc-facs-from-thermus-thermophile-cd12118.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd12118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/fatty-acyl-coa-synthetases-similar-to-lc-facs-from-thermus-thermophile-cd12118.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Butyrate--CoA ligase AAE11, peroxisomal", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDNLVLCEANNVPLTPITFLKRASECYPNRTSIIYGQTRFTWPQTYDRCCRLAASLLSLNITRNDVVSILAPNVPAMYEMHFSVPMTGAVLNPINTRLDAKTIAIILRHAEPKILFVDYEFAPLIQEVLRLIPTYQSQPHPRIILINEIDSTTKPFSKELDYEGLIRKGEPTPSSSASMFRVHNEHDPISLNYTSGTTADPKGVVISHQGAYLSALSSIIGWEMGIFPVYLWTLPMFHCNGWTHTWSVAARGGTNVCIRHVTAPEIYKNIELHGVTHMSCVPTVFRFLLEGSRTDQSPKSSPVQVLTGGSSPPAVLIKKVEQLGFHVMHGYGLTEATGPVLFCEWQDEWNKLPEHQQIELQQRQGVRNLTLADVDVKNTKTLESVPRDGKTMGEIVIKGSSLMKGYLKNPKATSEAFKHGWLNTGDIGVIHPDGYVEIKDRSKDIIISGGENISSIEVEKVLYMYQEVLEAAVVAMPHPLWGETPCAFVVLKKGEEGLVTSEGDLIKYCRENMPHFMCPKKVVFFQELPKNSNGKILKSKLRDIAKALVVREDDAGSKKVHQRSIEHVSSRL", "sequence_length": 572, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "74657da9639d2f328b70974f19a93fff92b799c9f9ead57e866f4f943dc0c9f6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9C8D4.json", "taxon_id": "3702", "uniprot_accession": "Q9C8D4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Stigmatella aurantiaca", "origins": [ { "cited_uniprot_accession": "Q9F636", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/myxochelin-a.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-b9324089ad", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/myxochelin-a.yaml" }, { "cited_uniprot_accession": "Q9F636", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/myxochelin-b.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:7061", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/myxochelin-b.yaml" }, { "cited_uniprot_accession": "Q9F636", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/myxochelin-a-and-b-biosynthesis.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY-8383", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/myxochelin-a-and-b-biosynthesis.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF07993", "PF13193" ], "protein_name": "MxcG", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MRDSQETRRPLSAAQHGIWLGQQFDLKSPVYNAGECIEICGPVDPALFEAAVRQAVREAEALHVRFVASEEGPQQLLGLQTDWVLHTADLSESPDPWAAVQAWMKADLAQTVDLSRGPLFTEALFKAAPDRFFWYQRIHHIAMDGFGFSLLARRVAEVYTALAAGRPITGGFGSFQAVLDEDVAYRNGPQHELDRTFWTERFADRPTPVSLASPAPMSPSFVRQTRFLPAQSMERLQAVSRPAGLNWPDLVLAATAVYLHRLTDATEVVLGLPVMTRLGSAALRVPCMAMNIVPLRVPVSPEASLLDLARGIAAEVRAMRPHLRYRYEQLRRDLKLVGGQRRLFGPVVNIMPFDYALRFAGMPTIAHNISAGPVEDLSIGLYARADGKGLRVDFDANPACYEAKALESHPSAFLELLEALTAAPDQAVGRDSGSLSSSSSKAPSLASVLDGGPLPVAAQPVLQLIAERALEQPDAIAVEHGQHQMSYRELLQSAQALSAQLISAGVQPNTAVAVMLPRGLDAIVASLGVLFSGAGYLPLDPYGPSSRTAAILEDAKPALIIQRSTPDADPLSRGNLVIRQNEQAPAAAPSSRTLPQTSGEHLAYVIYTSGSTGQPNGVQISHEALAHFVAGATHRYGVRRDDRVLQFAPLHFDASVEEIFLTLCAGAKLVLRTEEMLQSVSRLLDACAEHGITVLDLPTAFWHELAYSVSTGAARLPSSIRLVIIGGEAALPERVARWRSAVSPEVLLLNTYGPTEATVVATTATLSGPAPAGTPEEEIPIGRPLPGVRAALIDAQGKLAAPGAEGELYLLGGGLARGYLGRPELNTARFTTLGMLSDRPRAYRTGDKARVREDGQLVFVGRVDDEFKISGHRIDPTEIETVLLSHSGVREAAVVGQILPGGTRRLCAHIVAEMPVPATAELRRHLLSELPAAMVPSAFVFAEKLPRTSTGKLDRNALRLVQPPEEATPTATTTPFERMVLQVWEQVLGLSRITAQDDFFELGGQSLQTIQVANRLSVALGRDVPVATVFRYPTAAGLAQALEHGEQHSVEGEGISKAMLADAELPEEIVPRLPTPGAEAPLAPSPGPAAPLRQVLLTGATGFVGAHLLDQLLRQTQAKVVCLVRARDEAHAMERLREAMTSQRLSTASLSERVLALPADLGQPWLGLSSARFHGLAAECDMILHNAAVVSVVREYGSLQATNVRGTRELLRLAASVRPKPLHYVSTLAVAPQANLSPEVPEAFVPAHPGLRDGYQQSKWAAERLVEQASERGLPVTVYRLGRVSGALDSGIVNPQDLVWRILLAGIPAGALPQLDVGEVWTPVDYVARALVRLSLVPRPGTVFNLTPAPEVRLSEVFGWVQDYGYPVALCPVPEWRTRVAQSTGSAENSTTLAFFDLRAGAAEPTFGLGTIRSERVLQALSDTGISCPRTDRPLLHRYLDYCVGQGLLQRPPEHR", "sequence_length": 1456, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b10b236ebf5e6a86b5674226d6ee00df1c1f9e26da3102f423693e7d048f9b34", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9F636.json", "taxon_id": "41", "uniprot_accession": "Q9F636", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Stigmatella aurantiaca", "origins": [ { "cited_uniprot_accession": "Q9F638", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/myxochelin-a.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-b9324089ad", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/myxochelin-a.yaml" }, { "cited_uniprot_accession": "Q9F638", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/myxochelin-b.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:7061", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/myxochelin-b.yaml" }, { "cited_uniprot_accession": "Q9F638", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/myxochelin-a-and-b-biosynthesis.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:PWY-8383", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/myxochelin-a-and-b-biosynthesis.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "MxcE", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MTSPSPQREPSLLPGCTAWPEEYAAHYRKAGYWRGETFGQMLRERAQRHGDRTAVVAGTQRWSYRELDERTDRLVAGFHALGIKPRDRVVVQLPNTAEFFEVIFALFRLGALPVFALPAHRSAEINYFCEFTEAVAYVIPDKHSGFDYRTLAEKVRSAVPGLRHVVVVGEAGPFTSLSQLYASPVDLPGPIPSDVAFFQLSGGSTGVPKLIPRTHDDYIYSLRGSVEICQLDETTVYLCALPAAHNFPLSSPGVLGTLYAGGTAVMALHPSPDQAFPLIERERITFTALVPPLAMIWMDAAKARRHDLSSLKVLQVGGARLSTEAAQRVRPTLGCALQQVYGMAEGLVNYTRLDDPDELVIATQGRPISPDDEIRIIDEDGRDVAPGETGQLLTRGPYTIRGYYNAEAHNARAFTSDGFYCTGDLVRVTPEGYLVVEGRAKDQINRGGDKIAAEEVENHLLAHPSVHDAAVISIPDPFLGERTCAFVIPREAPPTAATLTSFLRERGLAAYKIPDRVEFVATFPQTGVGKVSKKALRETLAHR", "sequence_length": 543, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7d1a99e0612a5ade43ea20c48fbd9f9ac2869e7fbff9eb58e8bca9769330c44d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9F638.json", "taxon_id": "41", "uniprot_accession": "Q9F638", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces rishiriensis", "origins": [ { "cited_uniprot_accession": "Q9F8U8", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/shikimates_and_phenylpropanoids/coumermycin-a1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:3907", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/shikimates_and_phenylpropanoids/coumermycin-a1.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Putative ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MANRDHGPEHYVTRILDEAARDGARPVVRWRDTVITGTELHRSVRRVATALREAGVARDHAVAILTQVNSPWMLVVRYAAHLLGASVVYITGANHGTVTHDLPVTTRVRMMREAGASVLVFDERNAQLAETIRETVPDKLVLCGLGHPASGTVTADGRPVEDVAVEFPAETPELAMVLYTSGTTGQPKGVCKPFGAWNATVVGLAGQPRPRQTYLAMTAVSHTVGMVVDIALAAGGSVLLREKFDPTDFLRDVVTHRVTDTFMGVPQLYAILNHPDVRTTDLSSLQHLVYVGCPASPERLREAVTVFPGVLWQSYGSTETGRIAMLREDDHDHPELLATVGRPMPGVTIAIRDPQTGRDLPVNEIGEVVVHSPNNMAGYIGDPEGTTRVVRDGWVHTGDMGSVDERGYVRLFGRMHEMVKVQDTRVSPTEVEKVLVGCPGVVDACVYGHRRPDLIEELHAAVVLSTEDAPSFAALRDHVAQTMTPTHAPVRFVRWRQFPINNTGKTDRLRIREVSAEARGEGPDVLVDR", "sequence_length": 529, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c824d9ebb3fe09ec1423a2e59662cd6eeb018153878cd4435d8bc444037f51e5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9F8U8.json", "taxon_id": "68264", "uniprot_accession": "Q9F8U8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae", "origins": [ { "cited_uniprot_accession": "Q9FDB0", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/vibriobactin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:9973", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/vibriobactin.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF13193" ], "protein_name": "Non-ribosomal peptide synthetase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MKEMTAMQAAYWLGRQHDCLLDGVAAHLYAEFDGQALNRQALTEAVRALYAKHPMLRLAITKDGQQKILPLSTFHQLKVDDLSQWKPDEVESFVHTKRQRMTHQMLDLTQGNPIEISLTLLPEGKHRLHIDADMIACDAQSFRLLVDDLTSLYLEAIEHRLEIIESDVVTFFQYLDAQQADRALAKRKEVDKKWWQERLATIPAEPSLPYQPVPTDAVSANSQRFAHWFTPVERKGLAEVARQHHLTLTQLTLALFSQVIANACQERQFRLNVPTFHRGNRSLDIEHTIGDFSNLLIFSADVGTTQTLLSLCQQTANQLHQLLRHESYSGVSVMRDLSRKQGGVQRSPIVFTSGMEMRDEEIFSDHVTQHLGRMNWVISQGAQVTLDAQIAPAYEGILLNWDVRMENFADKDITALFAHYVDLIRCVALHPEMMQQSVQQIDAQLGYARRESIQEMPLTPLQQAYLLGRSTQIALGGVAMHEFREYRGHIDTQSLHSRLLYLVEHIPALRTRIDQEKWIQWVSPCIALNWQAIDLQHLSREQALLAVEPVRQQYQQRMHDLTRSPWQICVVQLPIEEQEEFSSIVLTSFDALIVDGRTHALILAALLGSEEPDITQVVQNARDTQSISPQFASKKAQDEAYWKSKLHPDCPPPALPWKQALETITTSRYARESLQIPKESVGKLNRCGIENGLFLNSLLTATILDVLSYWTTEIGMRVGFPVLIPSSNAIDGNESSFVILEHEKSTLSLLSQASKLQREMLEALEHLAFSGVDLNRLLMNQAPQALVLPVVLTNGLSWKTLNPEDAVTLFDGVTQTPQVALDIRLTYDEQKNLIISFDYALAVLETELIREMLSALHHRLSQITSSASLAAPLEPCIDLSHYRFNSDESASHDCDFLAKLAQQLFVRTEDKTAVICGEQTLSYAQLGEQVQRVMWQLKARGLTTGNVLAICLPRSVEHIVISLASALSGIIWVPIDAASPKERLNYLLENCHADLVVMDKPCEFGNVIAFDALIEPVLFADGVPDVTPLDQLSRLSQSQQTAYYLYTSGTTGKPKCVVVNNQATSNVIGQTGQAWHLTSEDVVMSVTPLHHDMSVFDLFATLSFGATLVLPAGHEEKDALQWNRLIERHQVTIWVSVPAILEMLLSCTQAGQLHSLRLIAQGGDYIKPATIAQLRAGSNPPRLISLGGPTETTIWSIWHELTADDVSVIPYGRPLAGNRYFIMDEIQRHVPQGVVGRIFTSGVNLAQGYLEDGELKQTDFVTVLDEHGHPVRAFRTGDQGYYRADGNIIFASRINGYVKVRGVRVSLPDIEKQLQTHPALASVVVVDYADTNGDTALAALFSVKPQQSASSQALREFAKQSLPSSHIPSRFIALEALPLSANGKVDRKQCQAHVQRQSISVEPVGQPNQSQPLSPPTLSSASLSEFEQRVWRQHQRHGDGRNQYATAYRLSGKVNIARLITALSQLPNHFPVLNRRYVLDEASGLTLYSAKPTPLEIHFEHVESMDEAFEHLVRWQNQPMDLAKQATLSFCLLSLGSEERVLGVISHQIISEQWDWRRVFECVTNGYNQIACDIDPVMEGEDLSLGFTPVMPQTPLSQALLPWLQPASHATWIEQSLPSANSAINTLCSRKYRIALHSSVLAEHGLAQPDKQEVLALIAALFARYLAASAKLGQFELYVPHDVERKTRELNGSMIESQLVHIALKGFERPLSQLSQEILDAMRQPLTGGVASETHASAAALVTWLVDPSVHLQLEGLRCEKLLFAAMHPKFEVALGVGLNCQGALVLELALDATVSPHVGAYLLEQFVAAIGGRTMPSSTTSSSHVSAIELTSNNPPTSNNAHAALAESELELSAVNSSAVEECILAEFRSALGVAEMTAEDDFFDFGGHSLIATRVIGRLLSEQGIELHINDMFSFPNAKQLAQQAVLHRKPTSTSFAVSEVVESSKAPLSLAQASLWKAMSKYAKFGLTHIFNLPFALKFLDEVNEQAFGEAFHWLLLRHAGLRTHFGLEDGQPYQHVIAASNIEHYQWFWTSKDNAAQSVARLLAQEAEHTFDLSQELPLRLNFVRDEQTGTQYLSLLFHHIVLDEWSINILMDELAQVYQHSVQGTRPQWQTEPLPFHEFARKQRSSAFNQTHLNYWLTKFAGVPWAQPLFAADHPLSNSTGVDLGEGGWVEIKLPKSTMVSLYQLAKARHASLFNVMYAAISASVHCLGAPEKLLVGTPASGRLDAEFFDTVGYFTTMGVQLVDFTKVQTVWQLIEQVKNSINQSMPYTDIPIDLIEEGLKGVEHETEGHMFEVFIQLHAKNKLHGELLLTEGHAIRFQQVDPDKSESGLGLQFEILEERIEQKQTLRVMMSYMSKHYSPAQVALLTKVTSGMFERFSDCIAQDIALPTLKKQVRQLEDEACRSPSMG", "sequence_length": 2413, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "da75484dbe8662525e2ebe9e955cab175eb7844695a85629a88ff8adb7b68a80", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FDB0.json", "taxon_id": "666", "uniprot_accession": "Q9FDB0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae", "origins": [ { "cited_uniprot_accession": "Q9FDB2", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/vibriobactin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:9973", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/vibriobactin.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "2,3-dihydroxybenzoate-AMP ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MTTDFTPWPEALAAQYRQLGYWQDKTLLDYLQQSAERTPNALALVGDNQQWRYQAMLERIEQLAAGFTELGLGCGDNVVLQLGNVAEFYLCFFALLRQGIRPILALPAHRLAEIRYFCQHSQAKAYLIDGAQRPFDYQALAQELLACCPTLQTVIVRGQTRVTDPKFIELASCYSASSCQANADPNQIAFFQLSGGTTDTPKLIPRTHNDYAYSVTASVEICRFDQHTRYLCVLPAAHNFPLSSPGALGVFWAGGCVVLSQDASPQHAFKLIEQHKITVTALVPPLALLWMDHAEKSTYDLSSLHFVQVGGAKFSEAAARRLPKALGCQLQQVFGMAEGLVNYTRLDDSAELIATTQGRPISAHDQLLVVDEQGQPVASGEEGYLLTQGPYTIRGYYRADQHNQRAFNAQGFYITGDKVKLSSEGYVIVTGRAKDQINRGGEKIAAEEVENQLLHHPAVHDAALIAISDEYLGERSCAVIVLKPEQSVNTIQLKRFLHQAGLADYKIPDQIQFIDQLPKTSVGKIDKNALRRRFDTLGLALMS", "sequence_length": 543, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0a002462a98989ad9197e7905576ac0a735326b3fe7051c391cb7245a55f6df0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FDB2.json", "taxon_id": "666", "uniprot_accession": "Q9FDB2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/acyl-coa-synthetase-nf006020.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF006020", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/acyl-coa-synthetase-nf006020.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/fatty-acyl-coa-synthetases-similar-to-lc-facs-from-thermus-thermophile-cd12118.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd12118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/fatty-acyl-coa-synthetases-similar-to-lc-facs-from-thermus-thermophile-cd12118.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Probable acyl-activating enzyme 5, peroxisomal", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEQMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSIGIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCGSKLLFVDVFSVDLAVEAISMMTTDPPILVFIADKEEEGGDADVADRTKFSYTYDDLIHRGDLDFKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSIDSLIDWTVPKNPVYLWTLPIFHANGWSYPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNMLSATNEFQPLNRPVNILTAGAPPPAAVLLRAESIGFVISHGYGLTETAGLNVSCAWKPQWNRLPASDRARLKARQGVRTVGFTEIDVVDPESGRSVERNGETVGEIVMRGSSIMLGYLKDPVGTEKALKNGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTNPAVNEVAVVARPDVFWGETPCAFVSLKSGLTQRPTEVEMIEYCRKKMPKYMVPKTVSFVDELPKTSTGKVMKFVLREIAKKMGTTRLSRM", "sequence_length": 552, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7181f9a773349376be48b741ecee480a14b7744f9a3ed345441ebea1f5bc1b4d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FFE6.json", "taxon_id": "3702", "uniprot_accession": "Q9FFE6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/acyl-coa-synthetase-nf006020.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF006020", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/acyl-coa-synthetase-nf006020.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Probable acyl-activating enzyme 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSIGIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDVFSVDLAVEAVSMMTTDPPILVVIADKEEEGGVADVADLSKFSYTYDDLIERGDPGFKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSVDSLIDWAVPKNPVYLWTLPIFHSNGWTNPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNMLSATQESQPLNHPVNILTAGSPPPATVLLRAESIGFVISHGYGLTETAGVIVSCAWKPKWNHLPASDRARLKARQGVRTVGFTEIDVVDPESGLSVERNGETVGEIVMRGSSVMLGYLKDPVGTEKALKNGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTIPAVNEVAVVARPDEFWGETPCAFVSLKNGFSGKPTEEELMEYCRKKMPKYMVPKTVSFMDELPKSSTGKVTKFVLRDIAKKMGDKTIS", "sequence_length": 550, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1ed6218f0b4019bbe87542fc6d438f71de9c662951db19aa80bf6052bf2fa552", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FFE9.json", "taxon_id": "3702", "uniprot_accession": "Q9FFE9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/propionate-coa-ligase-activity-go0050218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/propionate-coa-ligase-activity-go0050218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/propionyl-coa-synthetase-prpe-ec-6-2-1-17-propanoate-coa-ligase-amp-fo-cd05967.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05967", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/propionyl-coa-synthetase-prpe-ec-6-2-1-17-propanoate-coa-ligase-amp-fo-cd05967.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/acas-n-pf16177.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16177", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/acas-n-pf16177.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9H6R3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00501", "PF13193", "PF16177" ], "protein_name": "Acyl-CoA synthetase short-chain family member 3, mitochondrial", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1484a2d4bcc09ce5dfafd34082e8b83952cd7a31471d8557856468770cfd9a73", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKPSWLQCRKVTSAGGLGGPLPGSSPARGAGAALRALVVPGPRGGLGGRGCRALSSGSGSEYKTHFAASVTDPERFWGKAAEQISWYKPWTKTLENKHSPSTRWFVEGMLNICYNAVDRHIENGKGDKIAIIYDSPVTNTKATFTYKEVLEQVSKLAGVLVKHGIKKGDTVVIYMPMIPQAMYTMLACARIGAIHSLIFGGFASKELSSRIDHVKPKVVVTASFGIEPGRRVEYVPLVEEALKIGQHKPDKILIYNRPNMEAVPLAPGRDLDWDEEMAKAQSHDCVPVLSEHPLYILYTSGTTGLPKGVIRPTGGYAVMLHWSMSSIYGLQPGEVWWAASDLGWVVGHSYICYGPLLHGNTTVLYEGKPVGTPDAGAYFRVLAEHGVAALFTAPTAIRAIRQQDPGAALGKQYSLTRFKTLFVAGERCDVETLEWSKNVFRVPVLDHWWQTETGSPITASCVGLGNSKTPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEAFKHLYFEKFPGYYDTMDAGYMDEEGYLYVMSRVDDVINVAGHRISAGAIEESILSHGTVADCAVVGKEDPLKGHVPLALCVLRKDINATEEQVLEEIVKHVRQNIGPVAAFRNAVFVKQLPKTRSGKIPRSALSAIVNGKPYKITSTIEDPSIFGHVEEMLKQA", "sequence_length": 686, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "1484a2d4bcc09ce5dfafd34082e8b83952cd7a31471d8557856468770cfd9a73", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H6R3.json", "taxon_id": "9606", "uniprot_accession": "Q9H6R3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "Q9HWG3", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/pyochelin-biosynthesis.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0042864", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/pyochelin-biosynthesis.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Pyochelin synthase PchD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSSPVTPSAVDDAPDWPAAFVRRYLDAGHWQDQSFAEALATSAARHPRRIALCDDDQRLSYADLLQRCRRLAAGLRQAGLAHGDTVVLHLPNGIAFVETCFALFQLGVRPVLALPAHRQHEISGFCRFAEAKAYIGAERIDGFDPRPMARELLASGACRMALIHGEAEAPLQALAPLYQADALEDCAARAEDIACFQLSGGTTGTPKLIPRRHREYLYNVRASAEVCGFDEHTVYLTGLPMAHNFTLCCPGVIGTLLASGRVVVSQRADPEHCFALIARERVTHTALVPPLAMLWLDAQESRRADLSSLRLLQVGGSRLGSSAAQRVEPVLGCQLQQVLGMAEGLICYTRLDDPPERVLHTQGRPLSPDDEVRVVDAEGREVGPGEVGELTVRGPYTIRGYYRLPEHNAKAFSADGFYRTGDRVSRDKDGYLVVEGRDKDQINRGGEKIAAEEVENLLIAHPQVHDATVVAMPDSLLGERTCAFVIPRQPAPSALKLKQYLHACGLAAFKVPDRIELVPAFPQTGIGKISKKDLRERLRRELEARA", "sequence_length": 547, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d5a6c519be761bcc024a3859d89faea94e311cf8862af2268173f0eaa786e7e1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HWG3.json", "taxon_id": "208964", "uniprot_accession": "Q9HWG3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "Q9I4X3", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/2-heptylquinolin-4-1h-one.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-182e475a70", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/2-heptylquinolin-4-1h-one.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Anthranilate--CoA ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTLANLTEVLFRLDFDPDTAVYHYRGQTLSRLQCRTYILSQASQLARLLKPGDRVVLALNDSPSLACLFLACIAVGAIPAVINPKSREQALADIAADCQASLVVREADAPSLSGPLAPLTLRAAAGRPLLDDFSLDALVGPADLDWSAFHRQDPAAACFLQYTSGSTGAPKGVMHSLRNTLGFCRAFATELLALQAGDRLYSIPKMFFGYGMGNSLFFPWFSGASALLDDTWPSPERVLENLVAFRPRVLFGVPAIYASLRPQARELLSSVRLAFSAGSPLPRGEFEFWAAHGLEICDGIGATEVGHVFLANRPGQARADSTGLPLPGYECRLVDREGHTIEEAGRQGVLLVRGPGLSPGYWRASEEQQARFAGGWYRTGDLFERDESGAYRHCGREDDLFKVNGRWVVPTQVEQAICRHLPEVSEAVLVPTCRLHDGLRPTLFVTLATPLDDNQILLAQRIDQHLAEQIPSHMLPSQLHVLPALPRNDNGKLARAELRHLADTLYHDNLPEERAC", "sequence_length": 517, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8cca387203bea6084415791d2d7b9948c78d96686814eab24d62029de9b53f7e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9I4X3.json", "taxon_id": "208964", "uniprot_accession": "Q9I4X3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces niveus", "origins": [ { "cited_uniprot_accession": "Q9L9F6", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/shikimates_and_phenylpropanoids/cathomycin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-d4379ab45b", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/shikimates_and_phenylpropanoids/cathomycin.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "8-demethylnovobiocic acid synthase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANKDHAPEHYVTRILAEATLDGARPVVRWRDTVITGTQLDRSVRRVVTALREAGVARDHAVAVLTQVNSPWMLIVRYAAHLVGASVVYITGANHGIVTHELPVATRVRMLREAGASVLVFDESNAQLAETVDETVRDKLVLCGLGHPASGTVSVDGRPVDDVSVDFTPEAPELAMVLYTSGTTGQPKGVCRSFGSWNAAALRGAAYPRPVFLTMTAVSQTVAMIVDTVLAAGGSVLLRERFDPADFLRDVGEHRVTETFMGVAQLYAILGHPDARTADLSSLRHVLYLGCPASPERLREAAALLPGVLAQSYGSTEAGRITVLRAADHERPELLATVGRAVPGVTIAIRDPETGHDLPVGEIGEVVVHGPEVMAGYVADPEHTARVIRDGWVHTGDFGSVDERGYVRLFGRMREVVKVQDTRVSPTEVEKVLVGCPGVVDACVYGHRGPDLIEELHAAVVLGTEGAPSFDTLRDHVARAMTPTHAPIRFVRWRRFPINNTGKVNRLRVREVSAEARGDSPDVLVDR", "sequence_length": 527, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c97a3e765a0cc53c0cd915a0aa5e32ecadd87bae6b93f1796e05664a0d1b9a2c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9L9F6.json", "taxon_id": "193462", "uniprot_accession": "Q9L9F6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/fatty-acyl-coa-biosynthetic-process-go0046949.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0046949", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/fatty-acyl-coa-biosynthetic-process-go0046949.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/sporopollenin-biosynthetic-process-go0080110.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0080110", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/sporopollenin-biosynthetic-process-go0080110.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/4-coumarate-coa-ligase-4cl-4-coumarate-coenzyme-a-ligase-is-a-key-enzy-cd05904.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/4-coumarate-coa-ligase-4cl-4-coumarate-coenzyme-a-ligase-is-a-key-enzy-cd05904.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "4-coumarate--CoA ligase-like 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESQKQEDNEYIFRSLYPSVPIPDKLTLPEFVLQGVEEYTENVAFVEAVTGKAVTYGDVVRDTKRLAKALTSLGLRKGQVMVVVLPNVAEYGIIALGIMSAGGVFSGANPTALVSEIKKQVEASGARGIITDATNYEKVKSLGLPVIVLGEEKIEGAVNWKDLLEAGDKCGDTDNEEILQTDLCALPFSSGTTGLQKGVMLTHRNLIANLCSTLFGVRSEMIGQIVTLGLIPFFHIYGIVGICCATMKNKGKVVAMSRYDLRIFLNALIAHEVSFAPIVPPIILNLVKNPIVDEFDLSKLKLQSVMTAAAPLAPELLTAFEAKFPNVQVQEAYGLTEHSCITLTHGDPEKGQGIAKRNSVGFILPNLEVKFIDPDTGRSLPKNTSGELCVRSQCVMQGYFMNKEETDKTIDEQGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDVAVVPLPDEEAGEIPAACVVINPKATEKEEDILNFVAANVAHYKKVRAVHFVDSIPKSLSGKIMRRLLRDKILSINKK", "sequence_length": 542, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79b103a27b214200ea6c4112dac540899a45297184e13f9f236863f246e1c96a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LQ12.json", "taxon_id": "3702", "uniprot_accession": "Q9LQ12", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/acyl-coa-synthetase-nf006020.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF006020", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/acyl-coa-synthetase-nf006020.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Probable acyl-activating enzyme 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDLKPSAANSLPLTLLGFLERAATVYGDCTSIVYGNSTVYTWRETNHRCLCVASALSSIGIGRSDVVSVLSANTPEMYELQFSVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDFFYSDLAVEAITMLLNPPILVLIANEEEEEGGAEVTERSKFCYLYSDLITRGNPDFKWIRPGSEWDPIVVNYTSGTTSSPKGVVHCHRGIFVMTLDSLTDWAVPKTPVYLWTLPIFHANGWTYPWGIAAVGGTNVCVRKLHAPSIYHLIRDHGVTHMYGAPIVLQILSASQESDQPLKSPVNFLTAGSSPPATVLLRAESLGFIVSHGYGLTETAGVIVSCAWKPNWNRLPASDQAQLKSRQGVRTVGFSEIDVVDPESGRSVERDGETVGEIVLRGSSIMLGYLKNPIGTQNSFKNGWFFTGDLGVIHGDGYLEIKDRSKDVIISGGENVSSVEVEAVLYTNPAVNEAAVVARPDEFWGETPCAFVSLKPGLTRKPTDKEIIEYCKYKMPRYMAPKTVSFLEELPKTSTGKIIKSLLKEIAKNM", "sequence_length": 544, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "abe34f11deb738b9f04fbaaae89eaa0b8d792f94d861bf6736e7a10fa89676c9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LQS1.json", "taxon_id": "3702", "uniprot_accession": "Q9LQS1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/4-coumarate-coa-ligase-activity-go0016207.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016207", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/4-coumarate-coa-ligase-activity-go0016207.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/e-caffeate-coa-ligase-activity-go0106286.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0106286", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/e-caffeate-coa-ligase-activity-go0106286.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trans-feruloyl-coa-synthase-activity-go0050563.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050563", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trans-feruloyl-coa-synthase-activity-go0050563.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "4-coumarate--CoA ligase 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLQQQTHFLTKKIDQEDEEEEPSHDFIFRSKLPDIFIPNHLPLTDYVFQRFSGDGDGDSSTTCIIDGATGRILTYADVQTNMRRIAAGIHRLGIRHGDVVMLLLPNSPEFALSFLAVAYLGAVSTTANPFYTQPEIAKQAKASAAKMIITKKCLVDKLTNLKNDGVLIVCLDDDGDNGVVSSSDDGCVSFTELTQADETELLKPKISPEDTVAMPYSSGTTGLPKGVMITHKGLVTSIAQKVDGENPNLNFTANDVILCFLPMFHIYALDALMLSAMRTGAALLIVPRFELNLVMELIQRYKVTVVPVAPPVVLAFIKSPETERYDLSSVRIMLSGAATLKKELEDAVRLKFPNAIFGQGYGMTESGTVAKSLAFAKNPFKTKSGACGTVIRNAEMKVVDTETGISLPRNKSGEICVRGHQLMKGYLNDPEATARTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKFKGYQVAPAELEALLISHPSIDDAAVVAMKDEVADEVPVAFVARSQGSQLTEDDVKSYVNKQVVHYKRIKMVFFIEVIPKAVSGKILRKDLRAKLETMCSK", "sequence_length": 570, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "125aff703270c594eee58e3c51a030143926abb7b4949fa3cbb3c37b0f5ecd7b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LU36.json", "taxon_id": "3702", "uniprot_accession": "Q9LU36", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/enzymatic_activity/ec/6-2-1-ec6-2-1--.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "EC:6.2.1.-", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/enzymatic_activity/ec/6-2-1-ec6-2-1--.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/4-coumarate-coa-ligase-4cl-4-coumarate-coenzyme-a-ligase-is-a-key-enzy-cd05904.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/4-coumarate-coa-ligase-4cl-4-coumarate-coenzyme-a-ligase-is-a-key-enzy-cd05904.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "4-coumarate--CoA ligase-like 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQLKSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSKQIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPPGSNSKILSFDNVMELSEPVSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPDILDAVVIPFPDEEAGEVPIAFVVRSPNSSITEQDIQKFIAKQVAPYKRLRRVSFISLVPKSAAGKILRRELVQQVRSKM", "sequence_length": 544, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f9effd0fa537371eb78ff7f1f38f8bdfdfdc6acf3d382c0c32273c74a47f8bd0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M0X9.json", "taxon_id": "3702", "uniprot_accession": "Q9M0X9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/acas-n-pf16177.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16177", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/acas-n-pf16177.yaml" } ], "pfam_ids": [ "PF00501", "PF13193", "PF16177" ], "protein_name": "Acetyl-coenzyme A synthetase, cytoplasmic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGLPEERVRSGSGSRGQEEAGAGGRARSWSPPPEVSRSAHVPSLQRYRELHRRSVEEPREFWGDIAKEFYWKTPCPGPFLRYNFDVTKGKIFIEWMKGATTNICYNVLDRNVHEKKLGDKVAFYWEGNEPGETTQITYHQLLVQVCQFSNVLRKQGIQKGDRVAIYMPMIPELVVAMLACARIGALHSIVFAGFSSESLCERILDSSCSLLITTDAFYRGEKLVNLKELADEALQKCQEKGFPVRCCIVVKHLGRAELGMGDSTSQSPPIKRSCPDVQISWNQGIDLWWHELMQEAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATTFKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDVNRLWSIVDKYKVTKFYTAPTAIRLLMKFGDEPVTKHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCPIVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQPWPGIMRTVYGNHERFETTYFKKFPGYYVTGDGCQRDQDGYYWITGRIDDMLNVSGHLLSTAEVESALVEHEAVAEAAVVGHPHPVKGECLYCFVTLCDGHTFSPKLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSGKIMRRVLRKIAQNDHDLGDMSTVADPSVISHLFSHRCLTIQ", "sequence_length": 701, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4b3334bba830c2f7d886e2ec16e1d2a9270108ea40b962522c22590594be467c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NR19.json", "taxon_id": "9606", "uniprot_accession": "Q9NR19", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/acas-n-pf16177.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16177", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/acas-n-pf16177.yaml" } ], "pfam_ids": [ "PF00501", "PF13193", "PF16177" ], "protein_name": "Acetyl-coenzyme A synthetase 2-like, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAARTLGRGVGRLLGSLRGLSGQPARPPCGVSAPRRAASGPSGSAPAVAAAAAQPGSYPALSAQAAREPAAFWGPLARDTLVWDTPYHTVWDCDFSTGKIGWFLGGQLNVSVNCLDQHVRKSPESVALIWERDEPGTEVRITYRELLETTCRLANTLKRHGVHRGDRVAIYMPVSPLAVAAMLACARIGAVHTVIFAGFSAESLAGRINDAKCKVVITFNQGLRGGRVVELKKIVDEAVKHCPTVQHVLVAHRTDNKVHMGDLDVPLEQEMAKEDPVCAPESMGSEDMLFMLYTSGSTGMPKGIVHTQAGYLLYAALTHKLVFDHQPGDIFGCVADIGWITGHSYVVYGPLCNGATSVLFESTPVYPNAGRYWETVERLKINQFYGAPTAVRLLLKYGDAWVKKYDRSSLRTLGSVGEPINCEAWEWLHRVVGDSRCTLVDTWWQTETGGICIAPRPSEEGAEILPAMAMRPFFGIVPVLMDEKGSVVEGSNVSGALCISQAWPGMARTIYGDHQRFVDAYFKAYPGYYFTGDGAYRTEGGYYQITGRMDDVINISGHRLGTAEIEDAIADHPAVPESAVIGYPHDIKGEAAFAFIVVKDSAGDSDVVVQELKSMVATKIAKYAVPDEILVVKRLPKTRSGKVMRRLLRKIITSEAQELGDTTTLEDPSIIAEILSVYQKCKDKQAAAK", "sequence_length": 689, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "88b4568a46d107dfaf7ad78618380d21217cbfbec5e23a4914a97de3259cffab", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NUB1.json", "taxon_id": "9606", "uniprot_accession": "Q9NUB1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)", "origins": [ { "cited_uniprot_accession": "Q9RK14", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/coelichelin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:80049", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/coelichelin.yaml" } ], "pfam_ids": [ "PF00501", "PF00550", "PF00668", "PF13193" ], "protein_name": "Peptide synthetase", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MMEPTASLVRLSPAQLAGLRRRTGDFSDQVITEACAVALAYWAEGRGPAGLDLAPGTLFTDVLGWADSGGTAPTGWGADAGTVTVPGGVVPHEAQLALDDLADFPDRPLGTVGPCGPAERLELLAGWNDTDADRARPGLVEMFREQARARPDAVAVVDERRTLTYRQVEKLSAQLAHQLLARGLAVEDVVGISLERSAEMVIGLLAVLRAGGAFVPLDPHWPAERRAVVIEDAGVVVQLDASGEPAPGEPEAVAVDLGDWRFGDRPTEDTGVTVPGDALAYVIFTSGSTGRPKGAMIRHEAISERLLWQIHEILGFGHDDASLFKAPLSFDISINEIFLPLVSGGRLVVLRPGGERDPHHLLSVIDEQRVTFTYLVSSMLDVLLEMAGDSGRLDSLRHVWCGGEVLTPELYERFRTRLDIPLYHGYGPAETTIGVSHVVYRGAAERLSTSIGRANPNTRLYVLDDELRPVPVGVGGELYAGGLLLGRGYVNAPGLTASRFVANPFADDGSRLYRTGDLARFAPDGSLDFLGRADNQVKIRGMRLEIEDVEVGLAEHPRVRHTCVVARKNTAGGTYLVGYVIPAAGHEDLRADEVKAWAGEHMVEYMVPTHVVVMTEFPLTANGKLDRNALPEPVIPAGSSAPPTTDEERTVCAAVAALLQLDRVGVDQDFFQLGGDSILAISLLGRLRDAGLYVTARQIFTHSTVGALAAVASREDTTVVDHRDVPTGSVVGSPVVQWLGETTDAIDGFVQSVVLNTPADLTADALDLILAAVVRRHPMLRARLVRGERWGFDIPEAEAVPAVALWRESDQPLDACLALATGELDPVGGAMLRAVWRREARQLALVVHHVVIDGVSWRVLMDDLATAWRQFTSGTAVELPSGGTSFRRWTQLLERAAFDADSAYYRRALPGPDEPLGGRPLRADDTVARERIRTVSIGATATAALLGDTPAKFHTGINDVLVTALAVALARRRHDLGQTQTFAHIELEGHGREAAFVAPSAGFEPELSRTVGWFTTLFPVTVDPGTAPDPTAPAYLSAALKAVKEDLARVPDHGVSYGALRHLARVAFDAPAPQVLFNYLGRFDAGSSGDWQLASVNGQLGEQRDPRMRLPRALEFNAIAEPDATGAYTLVTAISWPDGMFTDTDITTLGAYYVEALTGLAALENGGHSPSDFHPLPLTQADVDALDGPALRDILPLTPLQEGLYFHSVYDGDATGSYVEQQLLTLEGEVDPGRLAAAATRLLTLHPNLAARFVPLADGRVVSVLESGREAPFTVLDRPGITDDEIRAHAEHDRRAGFDLATGPPMRYTLIRSGPRRHVLVQTVHHIVADGWSVPPMLRTLLAEYRAPGSGHALGGFPEHVRRLAARDGAASDRVWDEQLADLPGPSLIAEGHPPSAHFADTATTADTDVDAAARAAGVPLSVAVHGAWALTLGGILHRDDVVFGSTVSGRDADVPGIGDMVGLFINTIPLRARWADTTTARELLTAVRAHQAAVLPHQHVSLARIARRAGAGALFDTLVVFDVATDVAGLRRPGDPLAVTGIVNEGAPHYPLTLVVERTPDGRPRFNLIHDAELLREPEVREILRTFTRTLTHLLTRPEAPVGGLASEGTGRVEPVPPATLGELFDAAARRGPAAAAVTQCALDGATRSLTYGELSLAKDELAAVLRAAGVGPGKRVAVAVPRSVEQVVALVAVVGAGGAYVPLDLAYPDERLEYVLADSAPQVVLVTPEQRDRFARLLDRANVPARLLVLGEEPPPTAAEPGPAARWHDPAYVIYTSGSTGRPKGVVVPHSSVVTLLANTRPVMNFGPDDVWVQFHSFSFDFAVWELWGALTHGGELLVPDYGLTRSPVDFHRLVRERGVTVLNQTPSAFHRFAEADRHAGEPLPALRRIIFGGEGLDLARLRDWVARHGTESPELVNMYGITETTVHVTHRVLTAADFAPGDRAASPIGGPVPGLVTHLLDDRLRPVPPGRVGAIYVAGDQVSLGYLGRPGLTAGRFVANPFTADGSRMYHTGDLARRTLDGQLEFAGRADDQVQLKGFRIEPGEVESAIRDLDGVVDAAVTVADTDDHLVAHVVGRVPADLTGLLSAKLPAHMVPGRVLPVDALPLTVNGKLDRRALAERATRTPSAEPAPHGGNDSVLATLVGLFAETLPGSAPDADTDFFAAGGDSIVAITVINRARAAGLPVAPRDVFLLRTPRALAEHLATRTPPPEASPAPTGHQDGPLPPTPIMLRQRELGGSLARFAQARTLAAPEGTGFADAERAARAVVGAHPALRLRLRVEHGVWSLSTEPAREVAVTRGSGTDVTQTADEAAGRLDPENGDIVAFTWLETSRTLVVAVHHLAVDAVSWLILLDDLAAAMRGAVPAPPTTPYAEYARALTHRAAQQTDGLDHWISTLGAPAPLPAAGKRRETTVVLAPGVSDRVTRTAPAALGLGLTELLCGALRTALTRVQRTPTDLAIDLERHGRVPALDHHDYTRTVGWFTAIAPVRLTAHTDPVAAAREVTARRPDEHAHVAYGGLRYLNPQTAPLLGTARPQALFNYLGRGAESDAPRLTGADAGSPYAVEVNAWTDAATGGLHAAFTLAEGVPDEITEHWHRALERIADAAATAERTAPVSPLQRGLYFQAQLTGPAGHYVAQSYFTFERRLEPDALSRAAACVLARHPATGAGFTTDEDGNPVQVLAAGRRIDVHTVEAATDAEVDALRLGDRERGFDPAEPPLIRLTVVRLPDDRDGLLLSYHLLLWDGWSREIVLRDLFDAYRAVLAGEPLDPGPAAPGFEDHARALAARDPAPSERFWARHLAGLSGPTLLAGPAPALPDDLPRALAHTLTAERSDALRAAARTYGVTLNSVLTGAFGLLLGARTGRADAVFGVTVSGREGEGLADIVGVLLNTVPMWTRARPHDTVRAYLTAVQEARVDAMEHEHLGLGEIQRASGHDTLFDNLFVLQNFLDLDAFAEMNARHGITSVRADDSTHYPFTWVVTPGDRLTVKLEYRDHDTGHARALLDDYLRVLDDLAGRSGAAESRAPIGALPGLAPAPEPAPRTGIGTDTVVDRFDRAADREPDRTALVAHGSTMTFAHLRDRSRAVAGVLARRGIGPGATVGLALPRSLDSIVALFAVLRTGAAYVPLELDHPDERIAAVVADARPDAVLTVSAVTPRLTGGPDLIELDRPLPDAEPCVTFAPDDPDRLRHPAYTIYTSGSTGRPKGVVTEYAGLTNMLVNHRRRIFEPVLARHGHRTFRVAHTVSFAFDMSWEELLWLADGHEVHVCDEELRRDAPRLVAYCLEHGIDVVNVTPTYAQQLLAEGLLDDPARRPALVLLGGEAVTPALWTRLAATEGTVGYNLYGPTEYTINTLGVGTFECPDPVVGVAIDNTDVYVLDPWLRPLPDGVPGELYVAGVGIARGYLGQPAQTAHRFVACPFGAPGERMYRTGDLVVRRPDGNLMYLGRTDQQVKIRGHRVEPGEVEAAFAAHPAVRFVAAVAQPDPQVDGAHRLAAYLVLDGADLAEVAAQVGAALPDFLRPTHYAQVDRIPLTVNGKADTKALPEARPLGALTTAGERAPRTETETTVCELFAEALDLDDDEVSAVSDFVALGGHSMLAVRLTGLLRREYGPVITIRDLFTLRTPEAIARHLDDHS", "sequence_length": 3643, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7974890a2d754a63272a651adae7d42959c160965c2cc2515e14dcaedcab3a2d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RK14.json", "taxon_id": "100226", "uniprot_accession": "Q9RK14", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/4-coumarate-coa-ligase-activity-go0016207.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016207", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/4-coumarate-coa-ligase-activity-go0016207.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/e-caffeate-coa-ligase-activity-go0106286.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0106286", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/e-caffeate-coa-ligase-activity-go0106286.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "4-coumarate--CoA ligase 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTQDVIVNDQNDQKQCSNDVIFRSRLPDIYIPNHLPLHDYIFENISEFAAKPCLINGPTGEVYTYADVHVTSRKLAAGLHNLGVKQHDVVMILLPNSPEVVLTFLAASFIGAITTSANPFFTPAEISKQAKASAAKLIVTQSRYVDKIKNLQNDGVLIVTTDSDAIPENCLRFSELTQSEEPRVDSIPEKISPEDVVALPFSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFNRDDVILCVLPMFHIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIVLAIAKSPETEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKGYLNDPLATASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQVAPAELESLLIGHPEINDVAVVAMKEEDAGEVPVAFVVRSKDSNISEDEIKQFVSKQVVFYKRINKVFFTDSIPKAPSGKILRKDLRARLANGLMN", "sequence_length": 556, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6f291d4ee4b81422c24f4788c7e5e4a73898e4456e2cb5dcb2244a9b181098a2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9S725.json", "taxon_id": "3702", "uniprot_accession": "Q9S725", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/4-coumarate-coa-ligase-activity-go0016207.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016207", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/4-coumarate-coa-ligase-activity-go0016207.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/e-caffeate-coa-ligase-activity-go0106286.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0106286", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/e-caffeate-coa-ligase-activity-go0106286.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trans-cinnamate-coa-ligase-activity-go0106290.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0106290", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trans-cinnamate-coa-ligase-activity-go0106290.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/trans-feruloyl-coa-synthase-activity-go0050563.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050563", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/trans-feruloyl-coa-synthase-activity-go0050563.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/4-coumarate-coa-ligase-4cl-4-coumarate-coenzyme-a-ligase-is-a-key-enzy-cd05904.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/4-coumarate-coa-ligase-4cl-4-coumarate-coenzyme-a-ligase-is-a-key-enzy-cd05904.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "4-coumarate--CoA ligase 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MITAALHEPQIHKPTDTSVVSDDVLPHSPPTPRIFRSKLPDIDIPNHLPLHTYCFEKLSSVSDKPCLIVGSTGKSYTYGETHLICRRVASGLYKLGIRKGDVIMILLQNSAEFVFSFMGASMIGAVSTTANPFYTSQELYKQLKSSGAKLIITHSQYVDKLKNLGENLTLITTDEPTPENCLPFSTLITDDETNPFQETVDIGGDDAAALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGDNPNLYLKSNDVILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIALAKNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQGYGMTEAGPVLSMSLGFAKEPIPTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQIMKEYLNDPEATSATIDEEGWLHTGDIGYVDEDDEIFIVDRLKEVIKFKGFQVPPAELESLLINHHSIADAAVVPQNDEVAGEVPVAFVVRSNGNDITEEDVKEYVAKQVVFYKRLHKVFFVASIPKSPSGKILRKDLKAKLC", "sequence_length": 561, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ccef09fd40878a1a3c76835d58f31876dce7d6fa53e83782ac2433f6a848ffa9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9S777.json", "taxon_id": "3702", "uniprot_accession": "Q9S777", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/fatty-acyl-coa-synthetases-similar-to-lc-facs-from-thermus-thermophile-cd05915.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05915", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/fatty-acyl-coa-synthetases-similar-to-lc-facs-from-thermus-thermophile-cd05915.yaml" } ], 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"organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/cholate-coa-ligase-activity-go0047747.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0047747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/cholate-coa-ligase-activity-go0047747.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/fatty-acid-transport-proteins-fatp-including-hsfatp2-hsfatp5-and-hsfat-cd05938.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd05938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/fatty-acid-transport-proteins-fatp-including-hsfatp2-hsfatp5-and-hsfat-cd05938.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/amp-binding-enzyme-c-terminal-domain-ipr025110.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025110", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/amp-binding-enzyme-c-terminal-domain-ipr025110.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/amp-binding.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00455", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/amp-binding.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/anl-c-terminal-domain-3-30-300-30.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.300.30", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/anl-c-terminal-domain-3-30-300-30.yaml" } ], "pfam_ids": [ "PF00501", "PF13193" ], "protein_name": "Long-chain fatty acid transport protein 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGVRQQLALLLLLLLLLWGLGQPVWPVAVALTLRWLLGDPTCCVLLGLAMLARPWLGPWVPHGLSLAAAALALTLLPARLPPGLRWLPADVIFLAKILHLGLKIRGCLSRQPPDTFVDAFERRARAQPGRALLVWTGPGAGSVTFGELDARACQAAWALKAELGDPASLCAGEPTALLVLASQAVPALCMWLGLAKLGCPTAWINPHGRGMPLAHSVLSSGARVLVVDPDLRESLEEILPKLQAENIRCFYLSHTSPTPGVGALGAALDAAPSHPVPADLRAGITWRSPALFIYTSGTTGLPKPAILTHERVLQMSKMLSLSGATADDVVYTVLPLYHVMGLVVGILGCLDLGATCVLAPKFSTSCFWDDCRQHGVTVILYVGELLRYLCNIPQQPEDRTHTVRLAMGNGLRADVWETFQQRFGPIRIWEVYGSTEGNMGLVNYVGRCGALGKMSCLLRMLSPFELVQFDMEAAEPVRDNQGFCIPVGLGEPGLLLTKVVSQQPFVGYRGPRELSERKLVRNVRQSGDVYYNTGDVLAMDREGFLYFRDRLGDTFRWKGENVSTHEVEGVLSQVDFLQQVNVYGVCVPGCEGKVGMAAVQLAPGQTFDGEKLYQHVRAWLPAYATPHFIRIQDAMEVTSTFKLMKTRLVREGFNVGIVVDPLFVLDNRAQSFRPLTAEMYQAVCEGTWRL", "sequence_length": 690, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8d7d28e32b0e3203deb55f7ad05e3c7011f917935385a100c702f13c4beab68c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y2P5.json", "taxon_id": "9606", "uniprot_accession": "Q9Y2P5", "uniprot_release": "2026_03" } ], "pfam_id": "PF13193", "short_name": "AMP-binding_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aquifex aeolicus (strain VF5)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4010-pf13194.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13194", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4010-pf13194.yaml" } ], "pfam_ids": [ "PF13194" ], "protein_name": "Uncharacterized protein aq_1828", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKYKGTGSLILTALIGGIPSSTAVTMAFSNLSRKFSYLSELFFFSIILSWLVMFFRVIFYTFIIFEGMIYKLVLLLLPYFALLLMFAIFLYLKGNKNHEEGGSMSIKNPFSLSQAFTFGLIYSTISVISHYLKTHFGDEGIYVLSFLSGIMDIDAITLLLARLSDKGEIGVDVAAMGILLAVMSNNLFKSGYAIIFGSKKLKIYFLFVALFTLIYTTTLLILFDKLHMSS", "sequence_length": 230, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60484ffffe591db744487739a39b6656e1c5ccacd83e1a28a79a93d44f3a5ecb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O67688.json", "taxon_id": "224324", "uniprot_accession": "O67688", "uniprot_release": "2026_03" } ], "pfam_id": "PF13194", "short_name": "DUF4010", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4011-pf13195.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13195", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4011-pf13195.yaml" } ], "pfam_ids": [ "PF13086", "PF13087", "PF13195" ], "protein_name": "Probable ATP-dependent helicase MG140", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNDWQWLKNRLVNSKTKSVSFWLPQTSSNIIDIAELIKCCSELKNTSINGLIDFLNQQDKLEFNLTRLKEIDVEDGKQLFGIETSVYKHFQNEIARFYKQVNKHFRETGSESLFLALPVIEGINEFNDIFRAPLLYVGVKLKVSPRFERFWLEINKEEIFLNPTIIGVETNKRNSLFKNNYDTTKIDVNDALKVFSELEYEFRMPLTSELKSFSKKAKSDFNTEKRTNYLINNVLLGIFDVKGDQLFQNFNEILNTDPDVLDELLKDRRDLLLENREFREQFDLKDTYLFSHLDIYQQYAVKQALLGDLIIEGPPGTGKSETIVNILVNLVLNNKKVLFVSEKVTALDVVYNRLGSFKHIALFNASVAAEKKRFYNQFAEFETYFTTYFSKKDLDATLPTFEGKWVDDILGAFQALQALYDTKINSGENLFSFKEIVSSFQMLDASYIKIKEYERFDEWVRVFSNPLWLEKHLSYQELKKELSQRWNGIDNFYQLQSLLNQTKKRKVLNYVLEHFEQFNTVISPKHVLFYKPSNKSQLLLKQLKQDVEQYTSLQRFQSPTKFETIKLNFINQVNENPTPWFFSWFIQFHAKPLLEKLVSFESNIIKTKQAYLNGIESYVASCKKLLKTTILNNFFQLYQTNKDELLEICRQAKNPVLKEITWWFKKHFELLKKLFPVHIMTLESAATLTPNQRGLYDYVVIDEASQVFLERAIPILFRADKYIIAGDTKQLKPANFFQSRAEYDVDEEFEDGNIEAAVHSSSLLHFLKNRSRILTLLKFHYRSDSADLIAFTNNRIYDNELIFMNKANADQRVFIVHDVIDGIWKNNRNLQEARDVVQRLEQLTTTNDYKKSLGVICFNKNQADLIEYLIDKQNNPLLNEWRERQNDVGEYEGLFVKNIENVQGDERDIIIFSLGYDRSVNSYGPISKQGGENRLNVAITRAKQRIELFKTNRGEDYNGLSSSSLGSKLLVEYLLYCEAMAKNQGEKITFQAVKRKETKAKYELAVENDFFNQLQAIFGGEFEIKRNVNEGAYFFSFVFYFNNIPYLAIDFNIPIPTSRKQVMEGILYREQFLKKRQWNLINIWIDEWKLNPIGVISKIRSSLAVHQNQHEEI", "sequence_length": 1113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "97494f8370cd3a402fe0e09b8b474997c3b2aca5652b7d2f50cf2d7ace68ea03", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47386.json", "taxon_id": "243273", "uniprot_accession": "P47386", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4011-pf13195.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13195", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4011-pf13195.yaml" } ], "pfam_ids": [ "PF13086", "PF13087", "PF13195" ], "protein_name": "Probable ATP-dependent helicase MPN_153", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNDWQWLKNRLVNAKTKAVSFWLAQTTSTILDIAELIKCCSDLKNTSINGLVDLINQQEKLEFNLTRLKEIDGEDARQLFGIEGNVYKHFQTELSRFYKQTRKHFRETGSESLFLGLPVIEGINEFNDVFRAPLLYVGVKLKVAPRLERFWLEINREEIFLNPTIIGVEINKRNSLFKNNYDTTKVDINQALEIFRELEYQFRMPLTSELKSFSKKAKSDFNTEKRTNFLTNNVLLGIFDVKGDQLFQNFNEILNTDPDVLDELLKDRRDLLYDNREFRENFNLKGTYLFSHLDIFQQYAVKQAFDGDVIIEGPPGTGKSETIVNILVNLALNKKKVLFVSEKVTALDVVYNRLGSFKHIALFNASVASEKKRFYSQFADYESFFTDNFSKKDLVNEMPVFDGQWVDKILSEFTNLQNIYDTQINSGNQSYSFKEILSSFPILDVSYIKIKEHDRFDEWVRVFSSQVWLEKHLTYLAFKAELSKRWQNIDNFYALKDLLEKRKNIRVLCYVLDYFEQNNSIIKPKRVLLYTPTERGQKQLHQLQQDVAKYNSLQRFKSAAKFETIKLNLANKLAQNAKPFFFSWFIQTHAQTLLENLVQTQKQLVKAKQSYLSKIEQYVVSCKRILKATILANFFELYQTNKNELLDICREAKNPVLKEITWWFKKNFALLSKLFPVHIMTFESAALLTPNQRRLYDYVVIDEASQVYLERAIPILYRGAKYIIAGDTKQLKPSNFFQARAEYDVDEEFEDGNVEAAVHSTSLLHFLKNRSRILTLLKFHYRSDSANLIAFTNNRIYNNELIFMNKATADKQVFIVHDVIDGIWRNNRNLQEARDVVQRLEQLTQTAEYQKSLGVICFNKNQAELIEYMIDKQNNPLLNEWRDRVNAQGEYVGLFVKNIENVQGDERDIIIFSLGYDRSVNSYGPISKQGGENRLNVAITRAKQRIELFKTNRASDYNGLSSNSLGSKLLVEYLLYCEAMANNQGESLDFQATQKQAPKAKYELELENQFFNELELIFGEQFTIKRNVNEGAYSFSFVFYFNENPYLAVDFNPALPHSRKEVSENIIYREQFLKKRKWNLVNIWLDEWKLNPGGVLQKLRNCLTHSENEFEEI", "sequence_length": 1113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "011a433480ff4472b565ccfc17ad221a425dd1397206a03ee6c31419268c8749", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75033.json", "taxon_id": "272634", "uniprot_accession": "P75033", "uniprot_release": "2026_03" } ], "pfam_id": "PF13195", "short_name": "DUF4011", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13196", "short_name": "DUF4012", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4013-pf13197.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13197", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4013-pf13197.yaml" } ], "pfam_ids": [ "PF13197" ], "protein_name": "Uncharacterized protein MJ0233", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTIESYLTNSYNYIIFNFKKLCIGGLMSAIVGAMSGVTTAFIDLFMERANYDIMHIIMSFLIYFGIIFIIGLIVSAIIGGYNVRIMKTTVEGLNVAPDWNNITDLLYRGILYIVGLVLLNIIFYFIPAILFVFGIFSLYISKIIGAFLIIISILIFIISVISLWLYSKLAEVNYSVKGFYGFFEFKEIFKMIGIRYIILVIIIAIINFIISLIVVLPLNIIDIFISYSALANSILTIIYISIKGISYALSTFVDFYLGVFSIRAVALYYKDRKGIT", "sequence_length": 277, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a1357f39bd65e32b113a2f04cdc3ac699b07dcf73415dc8e428ee56fba99cd65", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57685.json", "taxon_id": "243232", "uniprot_accession": "Q57685", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4013-pf13197.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13197", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4013-pf13197.yaml" } ], "pfam_ids": [ "PF13197" ], "protein_name": "Uncharacterized protein MJ1189", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKLEYYLKDAFYYVLSDVKKGIVGGLLSSTSGAIGAIFGIILSILLIHNINPNDVVGLDNNILLTSLIVASFGFLIALIIGFILDGYYVRVMKTTVENYDVLPDWDDIAELLKRGFLYWIGNIILSIIFMIVPILFIIFGVFLIFLPLVGIVFIGIGFLLLFVSTIALLIYEGLAEVNYSVKGFSGFFEFKEIFRMINLNYIILLIIVGVIVIVINFVVQLPFILLKIFAISPARYSTFSSSETIVDVISAVISAFVGFYTAVFAKRAIALYYKDRVEELKK", "sequence_length": 283, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "68d60514017fd4f368b079083971ccc11928d4ed49c43e1dbce27c22bb86e9b1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58589.json", "taxon_id": "243232", "uniprot_accession": "Q58589", "uniprot_release": "2026_03" } ], "pfam_id": "PF13197", "short_name": "DUF4013", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13198", "short_name": "DUF4014", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13200", "short_name": "DUF4015", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13204", "short_name": "Apiosidase", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13208", "short_name": "TerB_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13209", "short_name": "DUF4017", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13210", "short_name": "DUF4018", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13211", "short_name": "DUF4019", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13212", "short_name": "DUF4020", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13213", "short_name": "DUF4021", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13214", "short_name": "DUF4022", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13215", "short_name": "DUF4023", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13216", "short_name": "DUF4024", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4025-pf13217.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4025-pf13217.yaml" } ], "pfam_ids": [ "PF13217" ], "protein_name": "Uncharacterized protein YozQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"MQLLHLAILSPFLFAFIIPFLAKYAKRVHTGWFVLILPVLLFIYFLPMIRMTQSGETLRSVLEWIPSLGINFTVYIDGLGLLFALLITGIGSLVTLYSIFYLSKEKEQLGPFYVYLLMFMGAMLGVVLVDNVMVLYMFWELTSLSSFLLIGYWYKREKSRYGAAKSLLITVSGGLCMLGGFILLYLITDSFSIREMVHQVQLIAGHELFIPAMILILLGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGIYVIARFSPIFAFSAQWFWIVSLVGLFTMVWGSFHAVKQTDLKSILAFSTVSQLGMIISMLGVSAAALHYGHTEYYTVAAMAAIFHLINHATFKGSLFMAVGIIDHETGTRDIRKLGGLMAIMPITFTISLIGTFSMAGLPPFNGFLSKEMFFTSMLRVTHFDLFNVQTWGVLFPLFAWIGSVFTFIYSMKLLFKTFRGNYQPEQLEKQAHEAPVGMLVPPVILVALAVSLFFFPNILSYSLIEPAMNSIYPTLLDGHEKFHVHISQWHGVTTELLMTAGIVVIGTIGYLSLNKWKGIYKLFPSKLTLNRLYDKLLTMMEKGSYRVTKQYMTGFLRDYLLYIFAGFIILIGGAFAIKGGFSFKTEGMAKIGVYEIILTLVMISATVATVFARSRLTAIIALGVVGYTLALFFVIFRAPDLALTQLVIETISVALFLLCFYHLPKLRLKTKTRTFRMTNFIISLGVGVIVTLLGIASSSQRTKDSIASFFVKHSHDLGGGDNVVNVILVDFRGFDTMFEITVLTIAALGIYSMIKTKVKEEGKSGE", "sequence_length": 801, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0b5afb88037ccfc3496f3a9368251b1e4be918a776bf706e26065feb84d0b053", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9K2S2.json", "taxon_id": "224308", "uniprot_accession": "Q9K2S2", "uniprot_release": "2026_03" } ], "pfam_id": "PF13244", "short_name": "MbhD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13250", "short_name": "SNIPE", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4042-pf13251.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4042-pf13251.yaml" } ], "pfam_ids": [ "PF13251" ], "protein_name": "HEAT repeat-containing protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSALPGSKLSERVRTVGWQISRPYFCHFFPIRITAPPATCSANKGFPELEHARPCPKRCPGSISQAIHVGKMAAVQVAASLPCEQPREAPRELSLEQNNGFRRLSARLRALQPDDSTVSRMEIHLLFDQLISENYCEGGGVAPEDVSALLVRACQLVPLNQNHLVSKVSQLIHRLLNRLQVIVDEQNLDFLLTYTISAIQQCSPWTHMEILQALAALVYCNGSKCQKHLPDLLGKSGLLMKLSDVTHSDPEVRRAAVHCMANLCLSVPGQPYLEESYQLVCFQAFLTILQSPKSSDMDDITFCMLLQNALKGIQSLLNGGKMRLTQTEHLGALLAVLKKAMFHGLPGLNIEMPAVLYPTPLPQYDGRSPVKPQQPESSAARPSANKKKKYKVKPKKTQQGEKAEEEEPYGEVDAAPGLSMDQANTCVESAWCSSPWGSQGLPVDGGRATGREQVSSPFTISSWKRVSSSESDYSDAEGGMQGKMRSYQAKVRQGALACFLSTIKSIEKKVLYGYWSAFVPDTPELGSPQSVSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHKRAFTPFSVTIASSIRELHRCLLLALVAESSSQTLTQIIKCLANLVSNAPYNRLKLSLLTKVWNHIKPYIRHKDVNVRVSSLTLLGAVVSTHAPLPEVQLLLQQPCSSGRSSSSATPHLSTPDGWKALPAGPSLEEASLSSPKGTAEPCWLIRLCISTVVLPKEDSCSGSDAGSALGSTYEPSPMRLEALQVLAHLARGYFSMAQLYLMELGEVICKCMCEANPSIQLHGVKLLEELGTGLIQQYKPDSSTAPEQRVPVHMVAMFWTAMLNGPLPRALQSTEHPTLQASACDALSSILPEAFSSLPNDKQILCITMLLGLNDSKNHLVKAATSRALGVYVLFPCLRQDVIFVADTANAILMSLQDKSLNVRAKAAWSLGNLTDTLIVNMDTPDPSFQDEFSGLLLLKMLQSAIQASTDKDKVKSNAVRALGNLLHFLQPSHIERPRFAEIIEESIQALISTVVNEAAMKVRWNACYAMGNVFKNPALPLGTAPWTSQAYKALTSVVMSCKNFKVRIRSAAALSVPGRRAQYGSLEQFSQIWSALVTALQRSEDTTDFLEFKYCASLRTHVCQALLHLLGLASASDLPCIQETLTVNGDMIRSYILQFLKSGAGGDDPGAVHSPQERNQMVRVALRHIHSVQALAGDTAKGAIVGFLEDILTVHCDSSGERAVLRGSLDQ", "sequence_length": 1252, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0e6313e66fbe95241984bed42d449fb5b650d0f184657cf9c507c68aaeb6ba59", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1EC95.json", "taxon_id": "10116", "uniprot_accession": "A1EC95", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4042-ipr025283.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025283", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4042-ipr025283.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4042-pf13251.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4042-pf13251.yaml" } ], "pfam_ids": [ "PF13251" ], "protein_name": "HEAT repeat-containing protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAVQVVGSWPSVQPREAPREAIPERGNGFRLLSARLCALRPDDSSSARTEIHLLFDQLISENYSEGSGVAPEDVSALLVQACRLVPLNQNHLVSKVSQLIHHLLNRLQVIVDEQHLDFLLAYTISAIHQCSSWTHREILQALAALVYCNGSKCQKYLPELLGNTGLLMKLSDLAQSDPEVRRAAVHCMANLCLSVPGQPYLEEPYQNVCFQAFLTILQSPKSSDMDDITFCMLLQNALKGIQSLLNGGRMKLTQTDELGALLAVLKKFMFHGLPGLNIEMPTVLYPTPLPQYDGRTPIKPQQSESSASRPTLNKKKKSKVKPKKIQQGEEEEKESSGEIEAAPVTGTGRVNLHEGNTWCPSSLGVQSLPLDGSGAAEKDGVSSSFSSSSWKRVSSSESDFSDAEGGMQSKMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPQSVSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHRRAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSGLGNSNSATPHLSPPDWWKKAPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARGYFSMTQAYLMELGEVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTAAPDQRAPVFLVVMFWTMMLNGPLPRALQNSEHPTLQASACDALSSILPEAFSNLPNDRQMLCITVLLGLNDSKNRLVKAATSRALGVYVLFPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNLTDTLIVNMETPDPSFQEEFSGLLLLKMLRSAIEASKDKDKVKSNAVRALGNLLHFLQPSHIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNVFKNPALPLGTAPWTSQAYNALTSVVTSCKNFKVRIRSAAALSVPGKREQYGSVDQYARIWNALVTALQKSEDTIDFLEFKYCVSLRTQICQALIHLLSLASASDLPCMKETLELSGNMVQSYILQFLKSGAEGDDTGAPHSPQERDQMVRMALKHMGSIQAPTGDTARRAIMGFLEEILAVCFDSSGSQGALPGLTNQ", "sequence_length": 1181, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "91356d71188f60f77637b27011670aef9b0fa8fde014310470ad5aff02121f08", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6AI08.json", "taxon_id": "9606", "uniprot_accession": "Q6AI08", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4042-ipr025283.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025283", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4042-ipr025283.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4042-pf13251.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4042-pf13251.yaml" } ], "pfam_ids": [ "PF13251" ], "protein_name": "HEAT repeat-containing protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAVQVAASLPCGQPREAPRELSPEQDDGFRRLSARLRALQPDDSTVSRMEIHLLFDQLISENYSEGGGVAPEDVSALLVRACQLVPLNQNHLVSKVCQLIHRLLNRLQVVVDEPNLDFLLTYTISALQQCSSWTHMEILQALAALVYCNGSKCQKHLPDLLGKSGLLMKLSDLSHSDPEVRRAAVHCMANLCLSVPGQPYLEEPYQHVCFQAFLTILQSPKSSDMDDITFCMLLQNALKGIQSLLNGGKMRLTQTEHLGALLAVLKKAMFHGLPGLNIEMPAVLYPTPLPQYDGRSPVKPQQPESTTARSSANKKKKHKVKTKKTQQGEKAEEEEEEPCGEVEAAPGLSMDQANVSGESAWCSSPWGSQGLPVDGGRAAGREQASLPFASSSWKRVSSSESDYSDAEGGMQGKMRSYQAKVRQGALACFLSTIKSIEKKVLYGYWSAFVPDTPELGSPQSVSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHKRAFTPFSVTIASSIRELHRCLLLALVAESSSQTLTQIIKCLANLVSNAPYNRLKLSLLTKVWNHIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSGLSSSSSATPHLSTPDGWKTFPAGSSLEEASLSSPKGSSEPCWLIRLCISTVVLPKEDSCSGSDAGSALGSTYEPSPMRLEALQVLAHLARGYFSTAQLYLMELGEVICKCMCEANPSIQLHGVKLLEELGAGLIQQYKPDSNIAPEQRVPVHLVVVFWTAMLSGPLPRALQSAEHPTLQASACDALSSILPEAFSSLPNDKQILCITVLLGLNDSKNHLVKAATSRALGVYVLFPCLRQDVIFVADTANAILMSLQDKSLNVRAKAAWSLGNLTDTLIVNMDTPDPSFQDEFSGLLLLKMLQCAIQASTDKDKVKSNAVRALGNLLHFLQPSHVERPRFAEIIEESIQALISTVVNEAAMKVRWNACYAMGNVFKNPALPLGTAPWTSQAYKALTSVVMSCKNFKVRIRSAAALSVPSKRGQYGSLEQFIQIWSALVTALQKSEDTTDFLEFKYCASLRTHICQALLHLLSLASASDLPGIQETLKLHGDMIRSYILQFLKSGAEGDDPGAVHTPQERVQMVRVALKHIHRVQTLAGDTARGAIMGFLEDILTVHCDSSGEQVMLRGPSDQ", "sequence_length": 1184, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "223a592d72548890527ec97b41849f100a9ff002718e4b416f5a8f556bdd60a8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P1G0.json", "taxon_id": "10090", "uniprot_accession": "Q6P1G0", "uniprot_release": "2026_03" } ], "pfam_id": "PF13251", "short_name": "DUF4042", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13252", "short_name": "Phage_capsid_3", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13253", "short_name": "DUF4044", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13254", "short_name": "DUF4045", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13255", "short_name": "DUF4046", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13256", "short_name": "DUF4047", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13257", "short_name": "DUF4048", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4049-ipr025123.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025123", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4049-ipr025123.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4049-pf13258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4049-pf13258.yaml" } ], "pfam_ids": [ "PF13258" ], "protein_name": "Uncharacterized protein YhiJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIGTVAGTNDSTTTIATNDMVQEHVTNFTKELFGYIANGIGDDISSIARTMLGEVVEKIDDWQIERFQQSIQDDKISFTIQTDHSEKYSMLSGMRAHILRRNNNYQFIVTINSKNYGCSLDNTDINWCSIVYLLNNMTVNDNANDVAVTESYKPIWNWKISQYNVSDIKFETMIKPQFADRIYFSNCLPVDPTSTRPTYFGDTDGSVGAVLFALFATGHLGIMAEGENFLSQLLNIEDEVLNVLLRENFNEQLNTNVNTIISILNRRDIILESLQPYLVINKDAVTPCTFLGDQTGDRFSNICGDQFIIDLLKRIMSINENVHVLAGNHETNCNGNYMQNFTRMKPLDEDTYSGIKDYPVCFYDPKYKIMANHHGITFDDQRKRYIIGPITVSIDEMTNALDPVELAAIINKKHHAIINGKKFKTSRAISCRSFNRYFSVSTDYRPKLEALLACSQMLGINQVVAHNGNGGRERIGETGTVLGLNARDSKHAGRMFSMHNCQINPGAGPEITTPWKSYQHEKNRNGLMPLIRRRTMLQL", "sequence_length": 540, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70af03d58f46527b7e4cbed4ef9d330e777e4cdb4c8dc1a40904475126c79a82", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37627.json", "taxon_id": "83333", "uniprot_accession": "P37627", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4049-ipr025123.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025123", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4049-ipr025123.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf6860-ipr049206.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049206", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf6860-ipr049206.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4049-pf13258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4049-pf13258.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6860-pf21661.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21661", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6860-pf21661.yaml" } ], "pfam_ids": [ "PF13258", "PF21661" ], "protein_name": "Putative uncharacterized protein YhiL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKAIDNQIRNISSSHQDKHSDKVNSHQHHGKVDKTHRAKIVEFDKLDNDSQIDNDFGLHIIYFLQHGHWKVNDRSHQMEKVWFYNSEPSIDIQEYNRFADNTTDTFIFTIIPDNNHVLKLSSPITVTVECKGGYYFINSSGDKSDIIYKVDGLSIIARNFFTLLSGNFKPDWRWDVSKETFTKEKFDSYVKSVFSKIDFYKQCGVINPQNANTAYFGDTDGRVGAVLYALLVSGHIGIREKGWSLLCELLKHEEMASSAYKHKNNKVLYDLLNTRDMILNELHQHVFLKDDAITPCIFLGDHTGDRFSTIFGDKYILTLLNSMRNMEGNKDSRINKNVVVLAGNHEINFNGNYTARLANHKLSAGDTYNLIKTLDVCNYDSERQVLTSHHGIIRDEEKKCYCLGALQVPFNQMKNPTDPEELANIFNKKHKEHMDDPLFHLIRSNTLKPTPVYANYFDNTTDFRPARERIFICGETLKGEDPSKYIRQKYGHHGPGVDHNQQFDNGIMGLNSLKEARDKNNKIIYSSGLSCFQLH", "sequence_length": 535, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cbaa8b5d3f69b017b515ef76ab3657f5ed050ff3c024e744b506a3a4011c7d90", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P37629.json", "taxon_id": "83333", "uniprot_accession": "P37629", "uniprot_release": "2026_03" } ], "pfam_id": "PF13258", "short_name": "DUF4049", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, 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"MYQVSNLDLKCGVHNGELLTVLLPNIMDSGNATELGIGVEEWHKRRSSWLLGKKSTEETDSSNEVVVPENVYLNVYEALVYRRQKLKRPVKLSIVIAVLKAGWIRDGFWPAPSNSNGVSVPP", "sequence_length": 122, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b09fb93a7907aa6a5ea974fe1c4d23169bc330931c5d74e4ad2934a03b26d20f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C6Y4B4.json", "taxon_id": "284812", "uniprot_accession": "C6Y4B4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gag1-like-clamp-domain-ipr025124.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025124", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gag1-like-clamp-domain-ipr025124.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gag1-like-lock-domain-ipr053969.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gag1-like-lock-domain-ipr053969.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/clamp-gag1-like-pf13259.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/clamp-gag1-like-pf13259.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lock-gag1-like-pf22991.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22991", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lock-gag1-like-pf22991.yaml" } ], "pfam_ids": [ "PF13259", "PF22991" ], "protein_name": "Uncharacterized protein YLR407W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVSTSKTPKKNIKYTLTHTLQKWKETLKKITHETLSSIDDSSGSDEKIEALFTVSQPAVVASKGIDRDSGASMSQVGGGVNSTLEMKLTDESEESSSANNTTTTASHTLSNSKKSTQNFENYNVVEERIKLAQKSKAPFCNAEKIWKRRRQLWTQPTEQSESANNDGVTRREIFQAIPQEYYARVYKKLVVDDKPLREPLNLEDALQVINAGWTETRKWANAAKGMP", "sequence_length": 228, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c290152fc22370204d044ac8ba3ad507857578d5e34142483c3420d5f98a749", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q06070.json", "taxon_id": "559292", "uniprot_accession": "Q06070", "uniprot_release": "2026_03" } ], "pfam_id": "PF13259", "short_name": "clamp_Gag1-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13261", "short_name": "DUF4052", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13262", "short_name": "E217_gp27", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13264", "short_name": "DUF4055", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13265", "short_name": "DUF4056", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/cytosine-c-5-dna-demethylase-activity-go0051747.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/cytosine-c-5-dna-demethylase-activity-go0051747.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/dna-demethylase-activity-go0035514.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0035514", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/dna-demethylase-activity-go0035514.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4057-ipr025131.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025131", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4057-ipr025131.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4057-pf13266.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4057-pf13266.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9SIE0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF13266", "PF13532" ], "protein_name": "DNA oxidative demethylase ALKBH2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e49266c878353743dd7db4323e2aec2a04e25b6cde8ccd58ffcf087a3e821297", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTNPLNSTAANRSNQPSSDGISDGQITNEEAESLINKKNCSGHKLKEVTDSDTFSDNGKDDSDTKKRFHYHQDQRRMSLTSIVAVESPSSSNAPSRKTIDLGHGSDLIYIQRFLPFQQSWTFFDYLDKHIPWTRPTIRVFGRSCLQPRDTCYVASSGLTALVYSGYRPTSYSWDDFPPLKEILDAIYKVLPGSRFNSLLLNRYKGASDYVAWHADDEKIYGPTPEIASVSFGCERDFVLKKKKDEESSQGKTGDSGPAKKRLKRSSREDQQSLTLKHGSLLVMRGYTQRDWIHSVPKRAKAEGTRINLTFRLVL", "sequence_length": 314, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e49266c878353743dd7db4323e2aec2a04e25b6cde8ccd58ffcf087a3e821297", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SIE0.json", "taxon_id": "3702", "uniprot_accession": "Q9SIE0", "uniprot_release": "2026_03" } ], "pfam_id": "PF13266", "short_name": "DUF4057", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13267", "short_name": "DUF4058", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13268", "short_name": "DUF4059", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13269", "short_name": "DUF4060", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ccdc28-pf13270.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13270", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ccdc28-pf13270.yaml" } ], "pfam_ids": [ "PF13270" ], "protein_name": "Coiled-coil domain-containing protein 28B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDKKKKRSPKPCLTQPAQAPGTLRRVPVPTSHSGSLALGLPHLPSPKQRAKFKRAGKEKCRPVLAGGGGGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEEDEEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAENAEPEDQPAA", "sequence_length": 200, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5fc509c6ee2960a3f33fe3f9175426d1ddc2d215a0d97fc9ef72367163775921", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CEG5.json", "taxon_id": "10090", "uniprot_accession": "Q8CEG5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ccdc28-pf13270.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13270", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ccdc28-pf13270.yaml" } ], "pfam_ids": [ "PF13270" ], "protein_name": "Coiled-coil domain-containing protein 28A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPRAEPRATLGEQEKAGLPLGAWRLYLLRHFRKQTELRRSGSRDVTGALLVAAAVASEAVGSLRVAEGGPNTLLLQVLRSWPWCNKELKTMEERKVKRRSPKSFSAHCTQVVNAKKNAIPVSKSTGFSNPASQSTSQRPKLKRVMKEKTKPQGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPEDKRKTASDSNLDRLLSDLEELNSSIQKLHLADAQDVPNTSAS", "sequence_length": 274, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e4344c3ce1762f9b1c92e57f16616a4a32d646da7b0c286fc3cc4ff650155c83", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IWP9.json", "taxon_id": "9606", "uniprot_accession": "Q8IWP9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ccdc28-pf13270.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13270", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ccdc28-pf13270.yaml" } ], "pfam_ids": [ "PF13270" ], "protein_name": "Coiled-coil domain-containing protein 28B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDDKKKKRSPKPCLAQPAQAPGTLRRVPVPTSHSGSLALGLPHLPSPKQRAKFKRVGKEKCRPVLAGGGSGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAENAEPEEQSAA", "sequence_length": 200, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "72a003bb8c69461721af8357fb1aea4b6468b42ddbda5cd7e6f081dec4fbeddd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BUN5.json", "taxon_id": "9606", "uniprot_accession": "Q9BUN5", "uniprot_release": "2026_03" } ], "pfam_id": "PF13270", "short_name": "CCDC28", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4062-pf13271.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13271", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4062-pf13271.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5920-pf19334.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5920-pf19334.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-tep1-2nd-pf25047.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25047", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-tep1-2nd-pf25047.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-tep1-c-pf25048.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25048", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-tep1-c-pf25048.yaml" } ], "pfam_ids": [ "PF00400", "PF05386", "PF05729", "PF05731", "PF13271", "PF19334", "PF25047", "PF25048" ], "protein_name": "Telomerase protein component 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKLCGYVPVHPDILSLKNRCLTMLSDIQPLEKIHGQRSVNPDILSLENRCLTLLPDLQPMEKIHGQRSVHPDILSSENRCLTLLPDLQSLEKLCGHMSSHPDVLSLENRCLATLPTVKRTVSSGPLLQCLHRSHTAQADLRDPNFRNCLFPEPPTIEAPCFLKELDLPTGPRALKSMSATARVQEVALGQRCVSEGKELQEEKESAEVPMPLYSLSLGGEEEEVVGAPVLKLTSGDSDSHPETTDQILQEKKMALLTLLCSAMASSVNVKDASDPTRASIHEVCSALAPLEPEFILKASLYARQQLNLRDIANIVLAVAALLPACRPHVRRYYSAIVHLPSDWIQVAEFYQSLAEGDEKKLVPLPACLRAAMTDKFAQFDEYQLAKYNPRKHRSKTRSRQPPRPQRTKPPFSESGKCFPKSVWPLKNEQISFEAAYNAVSEKKRLPRFTLKKLVEQLHIHEPAQHVQALLGYRYPSTLELFSRSHLPGPWDSSRAGQRMKLQRPETWERELSLRGNRASVWEELIDNGKLPFMAMLRNLCNLLRTGISAHHHELVLQRLQHEKSVIHSRQFPFRFLNAHDSLDRLEAQLRSKASPFPSNTTLMKRIMIRNSKKIKRPANPRYLCTLTQRQLRAAMAIPVMYEHLKREKLRLHKARQWTCDLELLERYRQALETAVNISVKHNLPPLPGRTLLVYLTDANANRLCPKSHLQGPPLNYVLLLIGMMMARAEQTTVWLCGTGTVKTPVLTADEGILKTAIKLQAQVQELEENDEWPLETFEKYLLSLAVRRTPIDRVILFGQRMDTELLNVAKQIIWQHVNSKCLFVSVLLRKMQYMSPNLNPNDVTLSGCTDGILKFIAEHGASRLLEHVGQLDKIFKIPPPPGKTKVSPLRPLEENNPGPFVPISQHGWRNIRLFISSTFRDMHGERDLLMRSVLPALQARAFPHRISLHAIDLRWGITEEETRRNRQLEVCLGEVENSQLFVGILGSRYGYTPPSYDLPDHPHFHWTQRYPSGRSVTEMEVMQFLNRGQRSEPSDQALIYFRDPGFLSSVPDVWKPDFISESEEAAHRVSELKRFLQEQKEVTCRRYSCEWGGVAAGRPYTGGLEEFGQLVLQDVWSVIQKRYLQPGAQLEQPGSISEEDLIQASFQQLKSPPSPARPRLLQDTVQQLMLPHGRLSLVIGQAGQGKTAFLASLVSALKVPDQPNVAPFVFFHFSAARPDQCLAFNLLRRLCTHLHQKLGEPSALPSTYRGLVWELQQKLLLKSAQWLQPGQTLVLIIDGADKLVDHNGQLISDWIPKSLPRRVHLVLSVSSDSGLGETLQQSQSAYVVALGSLVPSSRAQLVREELALYGKRLEESPFNNQMRLLLAKQGSSLPLYLHLVTDYLRLFTLYEQVSERLRTLPATLPLLLQHILSTLEQEHGHNVLPQALTALEVTHSGLTVDQLHAVLSTWLTLPKETKSWEEAVAASHSGNLYPLAPFAYLVQSLRSLLGEGPVERPGARLCLSDGPLRTAVKRRYGKRLGLEKTAHVLIAAHLWKMCDPDASGTFRSCPPEALKDLPYHLLQSGNHGLLAKFLTNLHVVAAYLEVGLVPDLLEAYELYASSKPEVNQKLPEADVAVFHNFLKQQASLLTQYPLLLLQQAASQPEESPVCCQAPLLTQRWHNQCILKWINKPQTLKGQQSLSLPISSSPTAVAFSPNGQRAAVGTAGGTIYLLNLRTWQEEKALVSGCDGISSFAFLSDTALFLTTFDGLLELWDLQHGCWVFQTKAHQYQITGCCLSPDRRLLATVCLGGYVKLWDTVQGQLAFQYTHPKSLNCITFHPEGQVVATGNWSGIVTFFQADGLKVTKELGGPGPSVRTLAFSAPGKVVALGRIDGTVELWAWQEGTRLAAFPAQCGGVSTVLFLHAGGRFLTAGEDGKAQLWSGFLGRPRGCLGSLYLSPALSVALNPDGDQVAVGYRGDGIKIYRISSGPQEAQCQELNVAVSALVWLSPSVLVSGAEDGSLHGWMLRRNSLQSLWLSSVCQKPVLGLAASQEFLASASEDFTVRLWPRQLLTQPHAVEELPCAAELRGHEGPVCCCSFSPDGRILATAGRDRNLLCWDVKVAQAPLLIHTFSSCHRDWITGCTWTKDNILISCSSDGSVGLWNPEAGQQLGQFPGHQSAVSAVVAVEEHIVSVSRDGTLKVWDRQGVELTSIPAHSGPISQCAAALEPRPAGQPGSELMVVTVGLDGATKLWHPLLVCQIHTLQGHSGPVTAAAASEASGLLLTSDNSSVRLWQIPKEADDTCKPRSSAVITAVAWAPDGSLVVSGNEAGELTLWQKAQAVATARAPGRVSDLIWCSANAFFVLSANENVSEWQVELRKGSTCTNFRLYLKRVLQEDLGVLTGMALAPDGQSLILMKEDVELLQMKPGSTPSSICRRYAVHSSILCTSKDYGLFYLQQGNSGSLSILEQEESGKFEKTLDFNLNLNNPNGSPVSITQAEPESGSSLLCATSDGMLWNLSECTPEGEWVVDNIWQKKSRNPKSRTPGTDSSPGLFCMDSWVEPTHLKARQCKKIHLGSVTALHVLPGLLVTASEDRDVKLWERPSMQLLGLFRCEGPVSCLEPWMEPSSPLQLAVGDAQGNLYFLSWE", "sequence_length": 2629, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d013807d2a5685be26fa59faf055e61c8ea766656d2cf34796c97daa8d39d99b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O08653.json", "taxon_id": "10116", "uniprot_accession": "O08653", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4062-pf13271.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13271", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4062-pf13271.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5920-pf19334.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5920-pf19334.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-tep1-2nd-pf25047.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25047", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-tep1-2nd-pf25047.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-tep1-c-pf25048.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25048", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-tep1-c-pf25048.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/trove-pf05731.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05731", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/trove-pf05731.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P97499", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00400", "PF05386", "PF05729", "PF05731", "PF13271", "PF19334", "PF25047", "PF25048" ], "protein_name": "Telomerase protein component 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d1fb146d61e8603c6cdf5b76737d88b1d9f7264223e982265ac64a49bda0f779", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEKLCGHVPGHSDILSLKNRCLTMLPDLQPLEKIHGHRSVHSDILSLENQCLTMLSDLQPTERIDGHISVHPDILSLENRCLTMLPDLQPLEKLCGHMSSHPDVLSLENQCLATLPTVKSTALTSPLLQGLHISHTAQADLHSLKTSNCLLPELPTKKTPCFSEELDLPPGPRALKSMSATAQVQEVALGQWCVSKEKEFQEEESTEVPMPLYSLSLEEEEVEAPVLKLTSGDSGFHPETTDQVLQEKKMALLTLLCSALASNVNVKDASDLTRASILEVCSALASLEPEFILKASLYARQQLNLRDIANTVLAVAALLPACRPHVRRYYSAIVHLPSDWIQVAEFYQSLAEGDEKKLVSLPACLRAAMTDKFAEFDEYQLAKYNPRKHRSKRRSRQPPRPQKTERPFSERGKCFPKSLWPLKNEQITFEAAYNAMPEKNRLPRFTLKKLVEYLHIHKPAQHVQALLGYRYPATLELFSRSHLPGPWESSRAGQRMKLRRPETWERELSLRGNKASVWEELIDNGKLPFMAMLRNLCNLLRTGISARHHELVLQRLQHEKSVVHSRQFPFRFLNAHDSIDKLEAQLRSKASPFPSNTTLMKRIMIRNSKKNRRPASRKHLCTLTRRQLRAAMTIPVMYEQLKREKLRLHKARQWNCDVELLERYRQALETAVNLSVKHNLSPMPGRTLLVYLTDANADRLCPKSHSQGPPLNYVLLLIGMMVARAEQVTVCLCGGGFVKTPVLTADEGILKTAIKLQAQVQELEGNDEWPLDTFGKYLLSLAVQRTPIDRVILFGQRMDTELLKVAKQIIWQHVNSKCLFVGVLLQKTQYISPNLNPNDVTLSGCTDGILKFIAEHGASRLLEHVGQLDKLFKIPPPPGKTQAPSLRPLEENIPGPLGPISQHGWRNIRLFISSTFRDMHGERDLLMRSVLPALQARVFPHRISLHAIDLRWGITEEETRRNRQLEVCLGEVENSQLFVGILGSRYGYIPPSYDLPDHPHFHWTHEYPSGRSVTEMEVMQFLNRGQRSQPSAQALIYFRDPDFLSSVPDAWKPDFISESEEAAHRVSELKRYLHEQKEVTCRSYSCEWGGVAAGRPYTGGLEEFGQLVLQDVWSMIQKQHLQPGAQLEQPTSISEDDLIQTSFQQLKTPTSPARPRLLQDTVQQLLLPHGRLSLVTGQAGQGKTAFLASLVSALKVPDQPNEPPFVFFHFAAARPDQCLALNLLRRLCTHLRQKLGELSALPSTYRGLVWELQQKLLLKFAQSLQPAQTLVLIIDGADKLVDRNGQLISDWIPKSLPRRVHLVLSVSSDSGLGETLQQSQGAYVVALGSLVPSSRAQLVREELALYGKRLEESPFNNQMRLLLAKQGSSLPLYLHLVTDYLRLFTLYEQVSERLRTLPATLPLLLQHILSTLEQEHGHDVLPQALTALEVTRSGLTVDQLHAILSTWLILPKETKSWEEVLAASHSGNPFPLCPFAYLVQSLRSLLGEGPVERPGARLCLSDGPLRTTIKRRYGKRLGLEKTAHVLIAAHLWKTCDPDASGTFRSCPPEALKDLPYHLLQSGNHGLLAEFLTNLHVVAAYLEVGLVPDLLEAHVLYASSKPEANQKLPAADVAVFHTFLRQQASLLTQYPLLLLQQAASQPEESPVCCQAPLLTQRWHDQFTLKWINKPQTLKGQQSLSLTMSSSPTAVAFSPNGQRAAVGTASGTIYLLNLKTWQEEKAVVSGCDGISSFAFLSDTALFLTTFDGHLELWDLQHGCWVFQTKAHQYQITGCCLSPDRRLLATVCLGGYLKLWDTVRGQLAFQYTHPKSLNCVAFHPEGQVVATGSWAGSITFFQADGLKVTKELGAPGPSVCSLAFNKPGKIVAVGRIDGTVELWAWQEGARLAAFPAQCGCVSAVLFLHAGDRFLTAGEDGKAQLWSGFLGRPRGCLGSLPLSPALSVALNPDGDQVAVGYREDGINIYKISSGSQGPQHQELNVAVSALVWLSPSVLVSGAEDGSLHGWMFKGDSLHSLWLLSRYQKPVLGLAASRELMAAASEDFTVRLWPRQLLTQPHVHAVELPCCAELRGHEGPVCCCSFSPDGGILATAGRDRNLLCWDMKIAQAPLLIHTFSSCHRDWITGCAWTKDNILVSCSSDGSVGLWNPEAGQQLGQFSGHQSAVSAVVAVEEHIVSVSRDGTLKVWDHQGVELTSIPAHSGPISQCAAALEPRPGGQPGSELLVVTVGLDGATKLWHPLLVCQIRTLQGHSGPVTAAAASEASGLLLTSDDSSVQLWQIPKEADDSYKPRSSVAITAVAWAPDGSMVVSGNEAGELTLWQQAKAVATAQAPGRVSHLIWYSANSFFVLSANENVSEWQVGLRKGSTSTSSSLHLKRVLQEDWGVLTGLGLAPDGQSLILMKEDVELLEMKPGSIPSSICRRYGVHSSILCTSKEYGLFYLQQGDSGLLSILEQKESGEFEEILDFNLNLNNPNGSPVSITQAKPESESSLLCATSDGMLWNLSECTSEGEWIVDNIWQKKAKKPKTQTLETELSPHSELDFSIDCWIDPTNLKAQQCKKIHLGSVTALHVLPGLLVTASKDRDVKLWERPSMQLLGLFRCEGPVSCLEPWMEPSSPLQLAVGDTQGNLYFLSWE", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5920-pf19334.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5920-pf19334.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-tep1-2nd-pf25047.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25047", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-tep1-2nd-pf25047.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-tep1-c-pf25048.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25048", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-tep1-c-pf25048.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/trove-pf05731.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05731", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/trove-pf05731.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q99973", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00400", "PF05386", "PF05729", "PF05731", "PF13271", "PF19334", "PF25047", "PF25048" ], "protein_name": "Telomerase protein component 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "902f693e3a2c631f5ccb8c2eb5931aab72a1ad8d09c8ff75d92f9eaf9aebcbe5", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13281", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/map3k-traf-bd-pf13281.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O95382", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00069", "PF13281", "PF19039", "PF20302", "PF20309" ], "protein_name": "Mitogen-activated protein kinase kinase kinase 6", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1d62a832e19e9e79b65751ebd90599512e745fa8a0ba508c49702af1cab6573f", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAGPCPRSGAERAGSCWQDPLAVALSRGRQLAAPPGRGCARSRPLSVVYVLTREPQPGLEPREGTEAEPLPLRCLREACAQVPRPRPPPQLRSLPFGTLELGDTAALDAFYNADVVVLEVSSSLVQPSLFYHLGVRESFSMTNNVLLCSQADLPDLQALREDVFQKNSDCVGSYTLIPYVVTATGRVLCGDAGLLRGLADGLVQAGVGTEALLTPLVGRLARLLEATPTDSCGYFRETIRRDIRQARERFSGPQLRQELARLQRRLDSVELLSPDIIMNLLLSYRDVQDYSAIIELVETLQALPTCDVAEQHNVCFHYTFALNRRNRPGDRAKALSVLLPLVQLEGSVAPDLYCMCGRIYKDMFFSSGFQDAGHREQAYHWYRKAFDVEPSLHSGINAAVLLIAAGQHFEDSKELRLIGMKLGCLLARKGCVEKMQYYWDVGFYLGAQILANDPTQVVLAAEQLYKLNAPIWYLVSVMETFLLYQHFRPTPEPPGGPPRRAHFWLHFLLQSCQPFKTACAQGDQCLVLVLEMNKVLLPAKLEVRGTDPVSTVTLSLLEPETQDIPSSWTFPVASICGVSASKRDERCCFLYALPPAQDVQLCFPSVGHCQWFCGLIQAWVTNPDSTAPAEEAEGAGEMLEFDYEYTETGERLVLGKGTYGVVYAGRDRHTRVRIAIKEIPERDSRFSQPLHEEIALHRRLRHKNIVRYLGSASQGGYLKIFMEEVPGGSLSSLLRSVWGPLKDNESTISFYTRQILQGLGYLHDNHIVHRDIKGDNVLINTFSGLLKISDFGTSKRLAGITPCTETFTGTLQYMAPEIIDQGPRGYGKAADIWSLGCTVIEMATGRPPFHELGSPQAAMFQVGMYKVHPPMPSSLSAEAQAFLLRTFEPDPRLRASAQTLLGDPFLQPGKRSRSPSSPRHAPRPSDAPSASPTPSANSTTQSQTFPCPQAPSQHPPSPPKRCLSYGGTSQLRVPEEPAAEEPASPEESSGLSLLHQESKRRAMLAAVLEQELPALAENLHQEQKQEQGARLGRNHVEELLRCLGAHIHTPNRRQLAQELRALQGRLRAQGLGPALLHRPLFAFPDAVKQILRKRQIRPHWMFVLDSLLSRAVRAALGVLGPEVEKEAVSPRSEELSNEGDSQQSPGQQSPLPVEPEQGPAPLMVQLSLLRAETDRLREILAGKEREYQALVQRALQRLNEEARTYVLAPEPPTALSTDQGLVQWLQELNVDSGTIQMLLNHSFTLHTLLTYATRDDLIYTRIRGGMVCRIWRAILAQRAGSTPVTSGP", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hisk-n-like-pf20302.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hisk-n-like-pf20302.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/drhyd-ask-pf20309.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20309", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/drhyd-ask-pf20309.yaml" }, { 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"MESGGGNAPAGALGAASESPQCPPPPGVEGAAGPAEPDGAAEGAAGGSGEGESGGGPRRALRAVYVRSESSQGGAAGGPEAGARQCLLRACEAEGAHLTSVPFGELDFGETAVLDAFYDADVAVVDMSDVSRQPSLFYHLGVRESFDMANNVILYHDTDADTALSLKDMVTQKNTASSGNYYFIPYIVTPCADYFCCESDAQRRASEYMQPNWDNILGPLCMPLVDRFISLLKDIHVTSCVYYKETLLNDIRKAREKYQGEELAKELARIKLRMDNTEVLTSDIIINLLLSYRDIQDYDAMVKLVETLEMLPTCDLADQHNIKFHYAFALNRRNSTGDREKALQIMLQVLQSCDHPGPDMFCLCGRIYKDIFLDSDCKDDTSRDSAIEWYRKGFELQSSLYSGINLAVLLIVAGQQFETSLELRKIGVRLNSLLGRKGSLEKMNNYWDVGQFFSVSMLAHDVGKAVQAAERLFKLKPPVWYLRSLVQNLLLIRRFKKTIIEHSPRQERLNFWLDIIFEATNEVTNGLRFPVLVIEPTKVYQPSYVSINNEAEERTVSLWHVSPTEMKQMHEWNFTASSIKGISLSKFDERCCFLYVHDNSDDFQIYFSTEEQCSRFFSLVKEMITNTAGSTVELEGETDGDTLEYEYDHDANGERVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKYLKHRNIVQYLGSVSENGYIKIFMEQVPGGSLSALLRSKWGPMKEPTIKFYTKQILEGLKYLHENQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGVNPCTETFTGTLQYMAPEIIDQGPRGYGAPADIWSLGCTIIEMATSKPPFHELGEPQAAMFKVGMFKIHPEIPEALSAEARAFILSCFEPDPHKRATTAELLREGFLRQVNKGKKNRIAFKPSEGPRGVVLALPTQGEPMATSSSEHGSVSPDSDAQPDALFERTRAPRHHLGHLLSVPDESSALEDRGLASSPEDRDQGLFLLRKDSERRAILYKILWEEQNQVASNLQECVAQSSEELHLSVGHIKQIIGILRDFIRSPEHRVMATTISKLKVDLDFDSSSISQIHLVLFGFQDAVNKILRNHLIRPHWMFAMDNIIRRAVQAAVTILIPELRAHFEPTCETEGVDKDMDEAEEGYPPATGPGQEAQPHQQHLSLQLGELRQETNRLLEHLVEKEREYQNLLRQTLEQKTQELYHLQLKLKSNCITENPAGPYGQRTDKELIDWLRLQGADAKTIEKIVEEGYTLSDILNEITKEDLRYLRLRGGLLCRLWSAVSQYRRAQEASETKDKA", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hisk-n-like-pf20302.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hisk-n-like-pf20302.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/drhyd-ask-pf20309.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20309", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/drhyd-ask-pf20309.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/map3k-traf-bd-pf13281.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13281", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/map3k-traf-bd-pf13281.yaml" } ], "pfam_ids": [ "PF00069", "PF13281", "PF19039", "PF20302", "PF20309" ], "protein_name": "Mitogen-activated protein kinase kinase kinase 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTEADEGITFSVPPFAPSGFCTIPEGGICRRGGAAAVGEGEEHQLPPPPPGSFWNVESAAAPGIGCPAATSSSSATRGRGSSVGGGSRRTTVAYVINEASQGQLVVAESEALQSLREACETVGATLETLHFGKLDFGETTVLDRFYNADIAVVEMSDAFRQPSLFYHLGVRESFSMANNIILYCDTNSDSLQSLKEIICQKNTMCTGNYTFVPYMITPHNKVYCCDSSFMKGLTELMQPNFELLLGPICLPLVDRFIQLLKVAQASSSQYFRESILNDIRKARNLYTGKELAAELARIRQRVDNIEVLTADIVINLLLSYRDIQDYDSIVKLVETLEKLPTFDLASHHHVKFHYAFALNRRNLPGDRAKALDIMIPMVQSEGQVASDMYCLVGRIYKDMFLDSNFTDTESRDHGASWFKKAFESEPTLQSGINYAVLLLAAGHQFESSFELRKVGVKLSSLLGKKGNLEKLQSYWEVGFFLGASVLANDHMRVIQASEKLFKLKTPAWYLKSIVETILIYKHFVKLTTEQPVAKQELVDFWMDFLVEATKTDVTVVRFPVLILEPTKIYQPSYLSINNEVEEKTISIWHVLPDDKKGIHEWNFSASSVRGVSISKFEERCCFLYVLHNSDDFQIYFCTELHCKKFFEMVNTITEEKGRSTEEGDCESDLLEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLKVSSKKKKTQPKLSALSAGSNEYLRSISLPVPVLVEDTSSSSEYGSVSPDTELKVDPFSFKTRAKSCGERDVKGIRTLFLGIPDENFEDHSAPPSPEEKDSGFFMLRKDSERRATLHRILTEDQDKIVRNLMESLAQGAEEPKLKWEHITTLIASLREFVRSTDRKIIATTLSKLKLELDFDSHGISQVQVVLFGFQDAVNKVLRNHNIKPHWMFALDSIIRKAVQTAITILVPELRPHFSLASESDTADQEDLDVEDDHEEQPSNQTVRRPQAVIEDAVATSGVSTLSSTVSHDSQSAHRSLNVQLGRMKIETNRLLEELVRKEKELQALLHRAIEEKDQEIKHLKLKSQPIEIPELPVFHLNSSGTNTEDSELTDWLRVNGADEDTISRFLAEDYTLLDVLYYVTRDDLKCLRLRGGMLCTLWKAIIDFRNKQT", "sequence_length": 1374, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "acb6bfceb028a3ae5829248426f3ea5eb5863b320d20d32d78a5fa3bcb55f7fe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q99683.json", "taxon_id": "9606", "uniprot_accession": "Q99683", "uniprot_release": "2026_03" } ], "pfam_id": "PF13281", "short_name": "MAP3K_TRAF_bd", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhodopseudomonas palustris (strain TIE-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4070-pf13282.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13282", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4070-pf13282.yaml" } ], "pfam_ids": [ "PF02310", "PF04055", "PF13282" ], "protein_name": "Hopanoid C-2 methylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKAESGQTSRRILCVFPRYTKSFGTFQHSYPLMDDVAAFMPPQGLLVIAAYLPDEWSVRFVDENIRAATADDFAWADAVFVSGMHIQRQQMNDICRRAHDFDLPVALGGPSVSACPDYYPNFDYLHVGELGDATDQLIAKLTHDVTRPKRQVVFTTEDRLDMTLFPIPAYELAECSKYLLGSIQYSSGCPYQCEFCDIPGLYGRNPRLKTPEQIITELDRMIECGIRGSVYFVDDNFIGNRKAALDLLPHLVEWQKRTGFQLQLACEATLNIAKRPEILELMREAYFCTIFVGIETPDPTALKAMHKDHNMMVPILEGVRTISSYGIEVVSGIILGLDTDTPETGEFLMQFIEQSQIPLLTINLLQALPKTPLWDRLQREGRLVHDDNRESNVDFLLPHDQVVAMWKDCMARAYQPEALLKRYDYQIAHAYATRLHPSTPQRASKANIKRGMIMLRNIIWQIGIRGDYKLAFWKFALRRLIRGDIENLLLVMVVAHHLIIYAREASRGHANASNYSIRLREAAVPAE", "sequence_length": 527, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ecddf02fae3f5a6603934956dcaca3bb12c0b77ef6bcb715d4cd6656a86ce916", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B3QHD1.json", "taxon_id": "395960", "uniprot_accession": "B3QHD1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4070-pf13282.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13282", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4070-pf13282.yaml" } ], "pfam_ids": [ "PF02310", "PF04055", "PF13282" ], "protein_name": "Uncharacterized methyltransferase sll1242", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRALLIYPLFPPTFWSYEKILELVGRKVLLPPLGLITVAGILPQEWEFKLVDRNVRNVTEAEWDWAEVVIISGMIVQRDDMVENIKEAKAHGKLVAVGGPFATSVPDEVQNAGADFLILDEGEITLPLFVEALERGETAGIIRAQEKPDVTTTPIPRYDLLELDAYDSMSVQFSRGCPFQCEFCDIIVLYGRKPRTKEPAQLLRELDYLYELGWRRSVFMVDDNFIGNKRNVKLLLKELKVWQEEHQYPFRFNTEASVDLADDQELMDLMVECYFDAVFLGIETPDEESLEFTKKFQNTRNSLADSVDKIIKAGLRPMAGFIIGFDGEKQGAGDRIVRFAEQTAIPTTTFAMLQALPNTALWHRLKRENRLLDESKGNINQTTLMNFIPTRPLEDIANEYVEAFWELYDPHGYLDRNYRCFLKLGAPKCKTAFKLPNLVDLKALAIVIWRQGVKRDTRFRFWHHAFGILRHNPAVFEHYITLCAHNEHFLQYREIVRQEIGEQLRDYLSRQQQDKVEETVLSPTAIAAETEKVLAS", "sequence_length": 536, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9da8dfacae844a0dce6105e8a66b402cb9a05bb2ea4d70dba10ca2e5fabd538f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P42349.json", "taxon_id": "1111708", "uniprot_accession": "P42349", "uniprot_release": "2026_03" } ], "pfam_id": "PF13282", "short_name": "DUF4070", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13284", "short_name": "DUF4072", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13285", "short_name": "DUF4073", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4074-pf13293.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13293", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4074-pf13293.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/antennapedia.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00032", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/antennapedia.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O43365", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00046", "PF13293" ], "protein_name": "Homeobox protein Hox-A3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4ba32db18275c460c25b2b79742e7c46ab7181b2afa387ca187ea352761138d9", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL", "sequence_length": 443, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4ba32db18275c460c25b2b79742e7c46ab7181b2afa387ca187ea352761138d9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O43365.json", "taxon_id": "9606", "uniprot_accession": "O43365", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4074-pf13293.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13293", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4074-pf13293.yaml" } ], "pfam_ids": [ "PF00046", "PF13293" ], "protein_name": "Homeobox protein Hox-B3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHLEGDYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGRIQEAPKLTHL", "sequence_length": 431, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e912839adefcef428b3a537db2611e52c561b289f0c0c29829e4f1baa9d646cc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P14651.json", "taxon_id": "9606", "uniprot_accession": "P14651", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4074-pf13293.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13293", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4074-pf13293.yaml" } ], "pfam_ids": [ "PF00046", "PF13293" ], "protein_name": "Homeobox protein Hox-D3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGGNFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQGRLPEAPKLTHL", 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"MDRKKKPLDVTASSLVDLKAELFRKQEEFKQEKLLKDSGVFGKPKTSNKKPSIWSKQNAGVSSRAEKDAEQKLEEQKTLDKSREKLEEKAKLYEKMTKGDFLDEEVEDMYLVDFTQKIIDKRKEMEVLGATRDSRIKEERDAAVAAANDDDDEEEFSEKDIPPPQDPSEEWVDYVDSLGRSRRCMRKDLPSLLEMDKNLQGRLFVSPANEKTLLSEDMRKELQRQQWEEEEREALKKPMGPIHYEDIRENEARQLGVGYFAFARDKELRNKQMKTLEMLREQTTDQRIKRENIKEKRKAILEARLAKLRQKKMKKSKVDGTEEESRADGVVTEPSEPKSVPAPPPVAQSSKVEVIIQERKDSKPGVPHIREWDRGKDFSFGFWSKKQSELRAERDPEFAPPSNYFVGQKRTGSLSSQPWSRPGAAPSDLGHSSGQSQEPSSSHTSTPASESSPQAPTVTFQTLDDMISYYKQVT", "sequence_length": 474, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "94f917489fc2c39b605fbdd9d44e5fcea3e781eb23a2255a98a2a1f7cdd6556a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5PQS7.json", "taxon_id": "10116", "uniprot_accession": "Q5PQS7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccdc174-alpha-beta-grsr-domain-ipr057464.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057464", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccdc174-alpha-beta-grsr-domain-ipr057464.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccdc174-grsr-pf25449.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25449", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccdc174-grsr-pf25449.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4078-pf13300.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4078-pf13300.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q6PII3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF13300", "PF25449" ], "protein_name": "Coiled-coil domain-containing protein 174", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "039588b42955e34912f489957ec49b2c2116653d2c9be791c53a4763d25485f8", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDRRKKPLDVTASSLVDLKAELFRKQEEFKQEKLLKDSGVFGKPKTTNKKPSIWSKQNVGVSNRAEKDAEQKIEEQKTLDKAREKLEEKAKLYEKMTKGDFIDEEVEDMYLVDFTQKIIDKRKEMEASGAHRDSQKAGERDDDEENLPEGEIPPPQDPSEEWVDYVDSLGRSRRCMRKDLPDLLEMDKNLQGRLFISPANEKTLLSEDMRKELQRQQWEEEEREALKRPMGPVHYEDIRENEARQLGVGYFAFARDKELRNKQMKTLEMLREQTTDQRTKRENIKEKRKAILEARLAKLRQKKMKKSKEGGTEEENRDGDVIGPLPPEPEAVPTPRPAAQSSKVEVIVQERKDTKPGVPHIREWDRGKEFSFGYWSKRQSDLRAERDPEFAPPSDYFVGQKRTGFSSSQAWSRPGPAQSDPGQCPDQSHGPSPEHTSPTPAPDNPPQAPTVTFKTLDDMISYYKQVT", "sequence_length": 467, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "039588b42955e34912f489957ec49b2c2116653d2c9be791c53a4763d25485f8", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PII3.json", "taxon_id": "9606", "uniprot_accession": "Q6PII3", "uniprot_release": "2026_03" } ], "pfam_id": "PF13300", "short_name": "DUF4078", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13301", "short_name": "DUF4079", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13311", "short_name": "DUF4080", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13312", "short_name": "DUF4081", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13313", "short_name": "DUF4082", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13314", "short_name": "DUF4083", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13315", "short_name": "DUF4085", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13316", "short_name": "DUF4087", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13317", "short_name": "DUF4088", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas sp. (strain ADP)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/atzg-like-pf13318.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13318", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/atzg-like-pf13318.yaml" } ], "pfam_ids": [ "PF13318" ], "protein_name": "1-carboxybiuret hydrolase subunit AtzG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTETEIFAYIEAASIAIGIPLEPARARAVAHHFSRTALLAEMLESVPLSPESELAEIYRPAPFPAEDI", "sequence_length": 68, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1fb93952b38ec8acfbde539f288a509c6420caea6f0e4b389daa33017f2a08c1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A384E126.json", "taxon_id": "47660", "uniprot_accession": "A0A384E126", "uniprot_release": "2026_03" } ], "pfam_id": "PF13318", "short_name": "AtzG-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13319", "short_name": "DUF4090", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13320", "short_name": "GH123_cat", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13321", "short_name": "DUF4084", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acfd-helical-pf26759.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26759", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acfd-helical-pf26759.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4092-pf13322.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13322", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4092-pf13322.yaml" } ], "pfam_ids": [ "PF13322", "PF13402", "PF17291", "PF26759", "PF30472", "PF30473" ], "protein_name": "Accessory colonization factor AcfD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSMTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVLSLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGSTRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKGKLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSVTQH", "sequence_length": 1520, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2ea5eaa109289e00f9a7dda078222d9ba341882c665413ca6f54fec47ae00a7c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A5F372.json", "taxon_id": "345073", "uniprot_accession": "A5F372", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O78:H11 (strain H10407 / ETEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acfd-helical-pf26759.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26759", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acfd-helical-pf26759.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4092-pf13322.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13322", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4092-pf13322.yaml" } ], "pfam_ids": [ "PF13322", "PF13402", "PF17291", "PF26759", "PF30472", "PF30473" ], "protein_name": "Putative lipoprotein YghJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKKFKYKKSLLAAILSATLLAGCDGGGSGSSSDTPPVDSGTGSLPEVKPDPTPNPEPTPEPTPDPEPTPEPIPDPEPTPEPEPEPVPTKTGYLTLGGSQRVTGATCNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVSFSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQIDLAPEEFKKLVNEEVENNAATDKAPSTHTSPVVPVTTPGTKPDLNASFVSANAEQFYQYQPTEIILSEGRLVDSQGYGVAGVNYYTNSGRGVTGENGEFSFSWGEAISFGIDTFELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINEIINLSLSNGATLGEGEQVVNLPNEFIEQFNTGQAKEIDTAICAKTDGCNEARWFSLTTRNVNDGQIQGVINKLWGVDTNYKSVSKFHVFHDSTNFYGSTGNARGQAVVNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETASFNLPFISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYLSNDRWLPDAKSSMTVGTNLETVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNPDEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVMSNLKEESASGFVRLLDAAGLSMALNKSVVNNDPQGYPDRVRQRRSTPIWVYERYPAVDGKPPYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEGKQVTQFAFIDEADHKTPESLAAAKQRILDAFPGLEVCKDSDYHYEVNCLEYRPGTDVPVTGGMYVPQYTQLDLSADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQGERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVGTQCSAELKKSLIDNKMIYGEESSKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGVVNTNGETVTQNINLYSAPTKWFAGNMQSTGLWAPAQQEVSIESKSTVPVTVTVALADDLTGREKHEVSLNRPPRVTKTYDLKANDKVTFKVPYGGLIYIKGDSKEVQSADFTFTGVVKAPFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFANDLDTFASSMNDFYGRDSEDGKHRMFTYKNLPGHKHRFANDVQISIGDAHSGYPVMNSSFSPNSTTLPTTPLNDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEYLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWNLFQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANAYQLPGASEMSFEGGVSQSAYNTLASLDLPKPEQGPETINQVTEHKMSAE", 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"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4094-ipr025298.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025298", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4094-ipr025298.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-90-550-50-3-90-550-50.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.90.550.50", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-90-550-50-3-90-550-50.yaml" } ], "pfam_ids": [ "PF01762", "PF13334" ], 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/non-classical-arabinogalactan-protein-metabolic-process-go0010407.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4094-ipr025298.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025298", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4094-ipr025298.yaml" } ], "pfam_ids": [ "PF01762", "PF13334" ], "protein_name": "Probable beta-1,3-galactosyltransferase 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRAKAASGKAIIVLCLASFLAGSLFMSRTLSRSYIPEEEDHHLTKHLSKHLEIQKDCDEHKRKLIESKSRDIIGEVSRTHQAVKSLERTMSTLEMELAAARTSDRSSEFWSERSAKNQSRLQKVFAVIGINTAFSSKKRRDSVRQTWMPTGEKLKKIEKEKGIVVRFVIGHSATPGGVLDKAIDEEDSEHKDFLRLKHIEGYHQLSTKTRLYFSTATAMYDAEFYVKVDDDVHVNLGMLVTTLARYQSRPRIYIGCMKSGPVLSQKGVKYHEPEFWKFGEEGNKYFRHATGQIYAISKDLATYISTNQGILHRYANEDVSLGAWMLGLEVEHVDERSMCCGTPPDCQWKAQAGNVCAASFDWSCSGICKSVDRMARVHRACAEGDTPLANFRFFV", "sequence_length": 395, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4c4bf10831397ffd869ab8bea109e2d8b5bc1e6685dfd4b10cff85e2863696cf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9C809.json", "taxon_id": "3702", "uniprot_accession": "Q9C809", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/beta-1-3-galactosyltransferase-activity-go0048531.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0048531", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/beta-1-3-galactosyltransferase-activity-go0048531.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4094-ipr025298.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025298", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4094-ipr025298.yaml" } ], "pfam_ids": [ "PF01762", "PF13334" ], "protein_name": "Probable beta-1,3-galactosyltransferase 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKHNNKVSKRLTMTWVPLLCISCFFLGAIFTSKLRSASSDSGSQLILQHRRDQELKIVTQDYAHEKKKSQDNDVMEEVLKTHKAIESLDKSVSMLQKQLSATHSPQQIVNVSATNSSTEGNQKNKVFMVIGINTAFSSRKRRDSLRETWMPQGEKLEKLEKEKGIVVKFMIGHSSTPNSMLDKEIDSEDAQYNDFFRLDHVEGYYNLSAKTKSFFSSAVAKWDAEFYVKIDDDVHVNLGTLASTLASHRSKPRVYIGCMKSGPVLTKKTAKYREPEFWKFGEEGNKYFRHATGQIYAISKDLATYISNNQPILHKYANEDVTLGSWFIGLEVEQIDDRNFCCGTPPDCEMRAEAGEMCVATFDWKCSGVCRSVDRMWMVHVMCGEGSKAVWDANLKLS", "sequence_length": 398, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b158831d9630037e6a8ab933cc697afcb14581b218fc4751ae852b6ee61a4e2e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LM60.json", "taxon_id": "3702", "uniprot_accession": "Q9LM60", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4094-pf13334.yaml" } ], "pfam_ids": [ "PF01762", "PF13334" ], "protein_name": "Beta-1,6-galactosyltransferase GALT31A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGMGRYQKSATSGVSARWVFVLCISSFLLGVLVVNRLLASFETVDGIERASPEQNDQSRSLNPLVDCESKEGDILSRVSHTHDVIKTLDKTISSLEVELATARAARSDGRDGSPAVAKTVADQSKIRPRMFFVMGIMTAFSSRKRRDSIRGTWLPKGDELKRLETEKGIIMRFVIGHSSSPGGVLDHTIEAEEEQHKDFFRLNHIEGYHELSSKTQIYFSSAVAKWDADFYIKVDDDVHVNLGMLGSTLARHRSKPRVYIGCMKSGPVLAQKGVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISVNRQLLHKYANEDVSLGSWFIGLDVEHIDDRSLCCGTPLDCEWKGQAGNPCAASFDWSCSGICKSVDRMLEVHQRCGEGDGAIWHSSF", "sequence_length": 399, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d02ab6b6a8ac946157fa79a34e62df02ad3289b395a3d089e48ce6c9084db4a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9MAP8.json", "taxon_id": "3702", "uniprot_accession": "Q9MAP8", "uniprot_release": "2026_03" } ], "pfam_id": "PF13334", "short_name": "DUF4094", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13338", "short_name": "AbiEi_4", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Burkholderia cepacia", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4096-pf13340.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13340", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4096-pf13340.yaml" } ], "pfam_ids": [ "PF13340" ], "protein_name": "Insertion element IS402 uncharacterized 16.2 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKPIIDDELWTLIEPLLPPPKPRREKNPGRLPVSNRAALTGILFVLKTGLRWRDLPAEMGCGSGVTCWRRLRDWQAAGVWDRLHELLLAKLRAADQIDFSRAAVDSSSIRAVGAGQKLGQTPPIARDPVPSTTSSPTPTVRRSPRS", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cb139429420c7d9b2f5ab79c5a4f3402dfb80020ee3d7bd9295f8df9c72bb906", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P24537.json", "taxon_id": "292", "uniprot_accession": "P24537", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sinorhizobium fredii (strain NBRC 101917 / NGR234)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4096-pf13340.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13340", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4096-pf13340.yaml" } ], "pfam_ids": [ "PF13340" ], "protein_name": "Uncharacterized protein y4sN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDCDGLRDDQWERIRGFVPGGTKGKRGPRTNNRLFLDALLWMARSGGRWRDLPERLGDYRAVKRRYYRWIEMGVLDEMLAVLAREADLEWLMIDSTIVRAHQHAAGARRAKGGRMPRAWVGLEAG", "sequence_length": 125, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "50d1c85e4c787a27c80114346eb54afd13b7e99e416b5a26708b4be1adcf087c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P50358.json", "taxon_id": "394", "uniprot_accession": "P50358", "uniprot_release": "2026_03" } ], "pfam_id": "PF13340", "short_name": "DUF4096", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/liag-family-protein-nf049997.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF049997", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/liag-family-protein-nf049997.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/toastrack-duf4097-ipr025164.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025164", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/toastrack-duf4097-ipr025164.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4097-pf13349.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13349", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4097-pf13349.yaml" } ], "pfam_ids": [ "PF13349" ], "protein_name": "Protein LiaG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKMLGKLLITAGILVFFAVVVKDVFAAGLGFINGTEADSASASPRDIDSMVIESDSKDVRIIAEERSDISAGISGDSGKLFVTENKRKLELTVKEKEFQFLNGFNRSTLIVRLPYDYKGDLAVRTSSGDVSVAGNDHLALSGLNAVSASGNTSVTDVRIQDLKVKASSGDVSISNTVSKTAGIDLASGDANLVHVSGSLDVKMTSGDFNAVLKKVTGPVSVTLTSGDANVSLPQNGSFAVNALSASGDVSSPYSFADKGHKEQHHITGTQGSGRHPIDIKTDSGDLAIR", "sequence_length": 290, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fbb3a11104da0d270f84f5036ce174b396dda05640dc55920d79b898a3e4d014", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O32200.json", "taxon_id": "224308", "uniprot_accession": "O32200", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/toastrack-duf4097-ipr025164.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025164", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/toastrack-duf4097-ipr025164.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/yvlb-liax-n-terminal-domain-ipr053959.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053959", "section": "canonical_examples", "url": 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"qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.160.20.120", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-160-20-120-2-160-20-120.yaml" } ], "pfam_ids": [ "PF13349", "PF22746" ], "protein_name": "Uncharacterized protein YvlB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKQEKERILKLVEEGKLTAQEALTLIEKLDSDYKEKEEKITALSVHVHDEEEPFTTAKKESGKPSLGAKLFDWIDSAVKKVKEVDLDLNFGHAYDVQHIFQFKDTDFSSVELQIANGSVNIVPWEDDDIRAECQAKVYRADSQDAARHAFLQHIECEIKGNKFFIRTEKKTMKTNVTLYIPQKEYDKIRVKLFNGPVRGEHLHVKEFSAKTTNGVLSFSYLTAEKAIAETANGQIKLASHSCGTIEAETINGLIDLRGKSESIDVQSFNGNIAINVTESDCRSIYAKTTTGNVELAIPDDLAVKAELKSNLGTLSHELMDVEMLKEKNDTIQKEMMFTSNQAHDQNITVFSESLTGAIKLKYSQR", "sequence_length": 365, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5a890a3a27db80aafb8893e2cd1c8028e2fab0e26c6cdf6354e8c39df3ead2fe", "sequence_version": 1, 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"qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23468", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arc6-pf23468.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-pdr-pf25515.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25515", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-pdr-pf25515.yaml" } ], "pfam_ids": [ "PF13355", "PF23468", "PF25515" ], "protein_name": "Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"https://rest.uniprot.org/uniprotkb/Q9FIG9.json", "taxon_id": "3702", "uniprot_accession": "Q9FIG9", "uniprot_release": "2026_03" } ], "pfam_id": "PF13355", "short_name": "ARC6-like_IMS", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/arm-dna-bind-3-pf13356.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/arm-dna-bind-3-pf13356.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIRLVG", "sequence_length": 413, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "359d44e128718afcd487a1ac9c7c18aba88f1873a8f0ac0e578d79bf31277afb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P32053.json", "taxon_id": "83333", "uniprot_accession": "P32053", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/arm-dna-bind-3-pf13356.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/arm-dna-bind-3-pf13356.yaml" } ], "pfam_ids": [ "PF00589", "PF13356", "PF22022" ], "protein_name": "Prophage integrase IntS", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE", "sequence_length": 385, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6d653f8eeb1f65588074f33cfe4921dc175c9dce380f5f1f38aeb23b68e3c4ec", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37326.json", "taxon_id": "83333", "uniprot_accession": "P37326", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/prophage-integrase-activity-go0008979.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008979", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/prophage-integrase-activity-go0008979.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/provirus-excision-go0032359.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032359", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/provirus-excision-go0032359.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/viral-genome-integration-into-host-dna-go0044826.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044826", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/viral-genome-integration-into-host-dna-go0044826.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/integrase-dna-binding-domain-ipr025166.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025166", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/integrase-dna-binding-domain-ipr025166.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/integrase-dna-binding-domain-superfamily-ipr038488.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038488", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/integrase-dna-binding-domain-superfamily-ipr038488.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/integrase-dna-binding-domain-3-30-160-390.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.160.390", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/integrase-dna-binding-domain-3-30-160-390.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P71298", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00589", "PF13356", "PF30405" ], "protein_name": "Prophage integrase IntF", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "02bce1adb3d61d128e123f67461b7ea669a2102eaa709805d0832f609c24ac02", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MFIPSIYLHQQLHYCKTAILNWSRKMALSRQKFTFERLRRFTLPEGKKQTFLWDADVTTLACRATSGAKAFVFQSVYAGKTLRMTIGNINDWKIDDARAEARRLQTLIDTGIDPRIAKAVKIAEAESLQAESRKTKVTFSVAWEDYLQELRTGISAKTKRPYSTRYIADHINLSSRGGESKKRGQGPTSAGPLASLLNLPLSELTPDYIAAWLSTERQNRPTVTAHAYRLLRAFIKWSNYQKKYQGIIPGDLAQDYNVRKMVPVSASKADDCLQKEQLKSWFSAVRSLNNPIASAYLQVLLLTGARREEIASLRWSDVDFKWSSMRIKDKIEGERIIPLTPYVSELLNVLAQSPNSDVNKEGWVFRSNSKSGKIIEPRSAHNRALVLAELPHISLHGLRRSFGTLAEWVEVPTGIVAQIMGHKPSALAEKHYRRRPLDLLRKWHEKIETWILNEAGITIKNNVDMR", "sequence_length": 466, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "02bce1adb3d61d128e123f67461b7ea669a2102eaa709805d0832f609c24ac02", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P71298.json", "taxon_id": "83333", "uniprot_accession": "P71298", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/arm-dna-bind-3-pf13356.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13356", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/arm-dna-bind-3-pf13356.yaml" } ], "pfam_ids": [ "PF00589", "PF13356", "PF22022" ], "protein_name": "Prophage integrase IntZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKTPLTAKAIDAAQPQDKPYKLTDSLTPGLFLLVHPNGSKYWRFRYWLNKREFLQAIGVYPLITLKEARRRATESRSLIANGINPVEQARKEKAIDALNMAAGFKKVAEDWFATRVGGWSESYAKQVRSALEKDVYPVLGKRSIVDITARDVLALLQKKERTAPEQARKLRRRIGEIFKFAVITELVTRNPVADLDTALKARRPGHNAWIPISEIPAFYKALERAGSVQIQTAIRLLILTALRTAELRLCRWEWINLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTRSGYSAFVFPGRFMDKPLSASAILKALERIGYKSIATGHGWRTTFSTALNESGRYSPDWIEIQLAHVPKGIRGVYNQAAYLKQRRAMMQDYADAIDSILAGNGNPLEPE", "sequence_length": 402, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "628c2d5e6d66187c064a3cfb29dc2e2ec76d5ced6075c0c2acdff1e4ca7d2df7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76542.json", "taxon_id": "83333", "uniprot_accession": "P76542", "uniprot_release": "2026_03" } ], "pfam_id": "PF13356", "short_name": "Arm-DNA-bind_3", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/alginate-exp-pf13372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/alginate-exp-pf13372.yaml" } ], "pfam_ids": [ "PF13372" ], "protein_name": "Alginate production protein AlgE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSSRSVNPRPSFAPRALSLAIALLLGAPAFAANSGEAPKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDTDDGNNSRNDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGLLPASMSQYVDEPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF", "sequence_length": 490, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "59016050ba1849e64d84c49f2ad3f09250e26313692971131217b84c6f1e890f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P18895.json", "taxon_id": "208964", "uniprot_accession": "P18895", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Azotobacter vinelandii", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/alginate-exp-pf13372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/alginate-exp-pf13372.yaml" } ], "pfam_ids": [ "PF13372" ], "protein_name": "Alginate production protein AlgE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRKQRISAGLGLGASLLCCNPLFAGPVGPDRNFGMEVKVTAQSEDDRDLDTRSGGDAEGIALDLRPWVYGQRGNWGAMVMLQAVAATDIIETDPTDPNEEPGGDPANGFSRDSSRDPDKSYLALREFELGTIGRQRIRSLTNEGTWWDIHMESVNWTMDTSLLRAQAGVAKRFDEYRTDLDNLSAEDKDRTHVFGGLDYQWRQGHWAGFKVHHTSDDGDLPDSQMDVYEDRQSKSYTGDLTWLSVHLDRDFFNPRSTLPINYWGEFTWLTGEMDRSHFASDGSADHYKDVDVDAWAVDLGLRWNISDRWNVGAAYARGQAGEGDDESEQFMQTGLQSNRSTFTGLQTRIHRFGEASRGELTNLQVGTLFTSWKPREDLETSLIYHKFWRVDDDEDLGQNGISPIEKDGKPALKAGEKDLGQEVDLIITRYFNQGMLPANWGGELDEQSALIRLRSGLFFPSNAYASKGDSKMHRVFVDMIWRF", "sequence_length": 484, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ce4effe6017ff2f51ca6f67609caf4a1ebe7e8e0add30deac8f2c32cb401c857", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q44497.json", "taxon_id": "354", "uniprot_accession": "Q44497", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/alginate-exp-pf13372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/alginate-exp-pf13372.yaml" } ], "pfam_ids": [ "PF13372" ], "protein_name": "Alginate production protein AlgE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLNPFVKAGIGLSFALLWSCPTLAEMTAEKNFGLDVKITGQSEDDRDLGTRSGGDVNGLGLDLRPWVYGERGNWSAYAMGQAVAATDTIETDTLRQNDDGTSTDTGDDSRQPDKSYLAMREFWVGYSGLTAYPGEQLRFGRQRLRSDDGMWRDTNIEALNWTFDTTLLKADLGVAQRFSEYRTDLTELAPEDKDRTHIYGNVATQWTPGHWVGLRAHHTHDSGSLKNPGETVDALDKTRTGDLTWLGLEANSDAYNWRNDHTVNYWGSVTWLTGDRDKLSTQQVGDDQVATGKQSGDVNAWATDLGIRLRLDPQWQVGAAYARGSGGGGDDGSNNFEQTGLESNRSNFTGTRSRVHRFGEAFRGELGNLQAATLFASWQLRDDYDASLIYHKFWRVDGNQNIGSSGINAVVDDNGVNRQLVDGEKDLGQEMDVVVTKYFKQGLLPASMSQAIDEPSALVRLRAGVFKPGDAYGKETDSYMHRAFVDVIWRF", "sequence_length": 492, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a5dfb2106e3928f1ed30ccc21055214058d9774833e3af34b74a47a10f472af3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q88NC8.json", "taxon_id": "160488", "uniprot_accession": "Q88NC8", "uniprot_release": "2026_03" } ], "pfam_id": "PF13372", "short_name": "Alginate_exp", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsc3-c-pf13373.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13373", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsc3-c-pf13373.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsc3-n-pf10302.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsc3-n-pf10302.yaml" } ], "pfam_ids": [ "PF10302", "PF13373" ], "protein_name": "DSC E3 ubiquitin ligase complex subunit C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTFPAFLSPDPTWDGDSTGGPLLLTVRFSASIPDFPLDIENPDITTAAGLKQLIRTHLPPNLSSHRLRLIYAGRGLEDATPLSVSLKLPPSPSRTPVVQEDATTVKGKGKAPIREQPRLYIHCSIGDIVLSDADLAAEAAIATTLQQEQADEGYTGRKKQQQPPPSTTSAPRGFDRLLSAGFTPSEVSALRSQFMAIQSVSRTPDTMPTGAELRELEDRWMDEGSSAMAAGVPGGGEGISFADDDGGFGAGSRGAMDDMLWGAVMGFFWPVGCAMWLRREEGVWSWRKGLAVFVGVVINVAFGAMRIMN", "sequence_length": 309, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0956503be51766bd7b3f14d5fb9f57e8e4f7fe479abe6f63b01f02a136537d40", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B0Y6Q5.json", "taxon_id": "451804", "uniprot_accession": "B0Y6Q5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/dsc-e3-ubiquitin-ligase-complex-go0044695.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044695", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/dsc-e3-ubiquitin-ligase-complex-go0044695.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/fungal-type-vacuole-lumen-go0000328.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000328", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/fungal-type-vacuole-lumen-go0000328.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/egad-pathway-go0140624.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140624", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/egad-pathway-go0140624.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/dsc-e3-ubiquitin-ligase-complex-subunit-3-c-terminal-ipr025390.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025390", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dsc-e3-ubiquitin-ligase-complex-subunit-3-c-terminal-ipr025390.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/dsc-e3-ubiquitin-ligase-complex-subunit-3-ubiquitin-like-domain-ipr019413.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019413", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dsc-e3-ubiquitin-ligase-complex-subunit-3-ubiquitin-like-domain-ipr019413.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsc3-c-pf13373.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13373", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsc3-c-pf13373.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsc3-n-pf10302.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsc3-n-pf10302.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q12015", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10302", "PF13373" ], "protein_name": "DSC E3 ubiquitin ligase complex subunit 3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "babea4a60d6e244e63c729568c9dfe37614f13c2c2134290446d091f6818f0b5", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSAEPLLPTHNGSQGGEVRSPDQKFIVIRFSDVSVRDLQLNISNVPFSNINTHWLRRMCRELRPQQTQKRRLKFIRNGSILNTHSKIAEELTHYFDTANNSNVATGTSVAPEQNNYYIHCIIGTEELTQAELANEDLKDDATPSNDSMTTQAIGFDRLRSVGFTEQEIELLRQQFRATYGDLEEEEERLAQNGNRDDEGHDIRQLEEQWMESGSGTAQGNGAGGGNEDRFNSVPIANIKHNKDLLLGICVGFFFGVFGILLMKFDGLFNRRQKMAIFAGVIVNVMFCLVRGF", "sequence_length": 292, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "babea4a60d6e244e63c729568c9dfe37614f13c2c2134290446d091f6818f0b5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12015.json", "taxon_id": "559292", "uniprot_accession": "Q12015", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsc3-c-pf13373.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13373", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsc3-c-pf13373.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dsc3-n-pf10302.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dsc3-n-pf10302.yaml" } ], "pfam_ids": [ "PF10302", "PF13373" ], "protein_name": "DSC E3 ubiquitin ligase complex subunit 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSSALKKWEIVIRFASSIPDLSLEISDAQTTTIHSLFKIVRNRIPECRDKQLKMVFQGRLLSPGFTVERAVRGNWQRDENDDPNIVQKAFIHCIVGPTLTEEELASQDQAQSGLNSNSESPDDLQNAQTGETLRGFDRLREAGFTETEVNNLRSQFHRLRGTNLDSLTEDAIREAEDDWIDNGGQNSSADELDMSYETLLAGVLIGFFGGAIACYFLWERTMFSLRMQLSILVGIICNFAYGLLHSYRW", "sequence_length": 250, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7bdcd9f4b1c0754773fa56174e2c1a1cad87a98be6b7c4b251712e956bfaa314", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HE10.json", "taxon_id": "284812", "uniprot_accession": "Q9HE10", "uniprot_release": "2026_03" } ], "pfam_id": "PF13373", "short_name": "Dsc3_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13387", "short_name": "Lnb_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13388", "short_name": "DUF4106", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13389", "short_name": "DUF4107", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13390", "short_name": "DUF4108", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13397", "short_name": "RbpA", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4110-ipr025183.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025183", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4110-ipr025183.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4110-pf13422.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13422", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4110-pf13422.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/kelch-repeat-type-2-ipr011498.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011498", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/kelch-repeat-type-2-ipr011498.yaml" } ], "pfam_ids": [ "PF07646", "PF13422", "PF24681" ], "protein_name": "Kelch repeat-containing protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKKNKKDKEAKKARAELKNQKNQKKQEKKFQKNKNKSLNGEEDDESDQDLDEILSSFSKKQIELEHVDITSVEKPSCRTHPLMFANPQHNKHELFIFGGEFTDPETKLTHFYNDLYSYSIKNNSWKKYVSQNAPLPRSSAAVAVHPSGIALLHGGEFSSPKQSKFYHYSDTWLFDCVERKFTKLEFGGRDSSPSARSGHRIIAWKNYFILFGGFRDLGNGQTSYLNDLWCFDISTYKWTKLETNSKPDARSGHCFIPTDNSAILMGGYCKIIAKNNKNLMKGKILNDAWKLNLTPDPKKWQWEKLKNFKNQPSPRVGYSFNLWKQNKSVAFGGVYDLQETEESLESVFYNDLYMFHLELNKWSKLRIKPQRQTNSKNSPATSKRKSNKDQEKELQDLLNSILAKSNLNDDDDDNDDNSTTGPNSIDDDEDNEDDSDLDNQEDITISNQLPHPRFNAATCVVGDSLFIYSGVWELGEKDYPINSFYSIDLNKLDGVKVYWEDLSAIEEAKRLGDRDSDEDEFEYEDDEEDEDDGEEEQDAGPLEGDEDEESESDDDKQAQMEIPDERSWLPHPKPFETLRAFYLREGANFLTWSISNNRNLKGKQLKTKSFELCEDRWWERRDQVTLEEERLEDTGGIIERDTTTKPSKRR", "sequence_length": 651, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "11a7c5ab283e12458aa00ac1f0ab0c5d08adfc86c4d53dfcb40eb491731cd882", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q08979.json", "taxon_id": "559292", "uniprot_accession": "Q08979", "uniprot_release": "2026_03" } ], "pfam_id": "PF13422", "short_name": "DUF4110", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain N315)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aada-c-pf13427.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aada-c-pf13427.yaml" } ], "pfam_ids": [ "PF01909", "PF13427" ], "protein_name": "Spectinomycin 9-adenylyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNLINGKIPNQAIQTLKIVKDLFGSSIVGVYLFGSAVNGGLRINSDVDVLVVVNHSLPQLTRKKLTERLMTISGKIGNTDSVRPLEVTVINRSEVVPWQYPPKREFIYGEWLRGEFENGQIQEPSYDPDLAIVLAQARKNSISLFGPDSSSILVSVPLTDIRRAIKDSLPELIEGIKGDERNVILTLARMWQTVTTGEITSKDVAAEWAIPLLPKEHVTLLDIARKGYRGECDDKWEGLYSKVKALVKYMKNSIETSLN", "sequence_length": 260, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e0eb7e5a7a7dd0b1cfe1c326ba31f177da7d4bc1d13a328cce4d82fdf6aee780", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A0D1.json", "taxon_id": "158879", "uniprot_accession": "P0A0D1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aada-c-pf13427.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aada-c-pf13427.yaml" } ], "pfam_ids": [ "PF01909", "PF13427" ], "protein_name": "Aminoglycoside (3'') (9) adenylyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MREAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPHSDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAKRELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLFEALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQPVILEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK", "sequence_length": 263, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7e2fe03f613cd8419ce2fd94427ac6736ade16cd967d939afb7cd9adbd2794f4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AG05.json", "taxon_id": "562", "uniprot_accession": "P0AG05", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aada-c-pf13427.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aada-c-pf13427.yaml" } ], "pfam_ids": [ "PF01909", "PF13427" ], "protein_name": "Aminoglycoside (3'') (9) adenylyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLSIPPSIQCQTEAACRLITRVTGDTLRAIHLYGSAVAGGLKPNSDIDLLVTICQPLTEAQRATLMQELLALSSPPGASAEKRALEVTVVLYSQLVPWCFPPSREMQFGEWLREDICQGIYEPAQQDWDMVLLITQILETSIPLKGERAERLFTPAPAAQLLKALRYPLDLWQSTADVQGDEYHIVLTLARIWYTLSTGRFTSKDAAADWLLPQLPEDYAATLRAAQREYLGLEQQDWHILLPAVVRFVDFAKAHIPTQFT", "sequence_length": 262, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3939ffdd8036e83d3bf10118bb39e6c63f286833e71cac7287a7b5ef8d7d7664", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8ZPX9.json", "taxon_id": "99287", "uniprot_accession": "Q8ZPX9", "uniprot_release": "2026_03" } ], "pfam_id": "PF13427", "short_name": "AadA_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4112-pf13430.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13430", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4112-pf13430.yaml" } ], "pfam_ids": [ "PF13430" ], "protein_name": "Uncharacterized membrane protein YLR326W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGFIKSTLLGLGQDYLEDQYQEFAEQHFQPTRDPFYETNKDGKKHRRRLPYYCTKDESKAWKKVQNKAWLHDKSLCGCCCWTNTIGWAPLLALLPVIGPLLMYWVHDKLIELADDRYKLPAEIKVKMHGNIVIDLLISLVPILGSVFAWLHACSTRNAAIVYNFVGKRALERKQAELMHQKEENEKHSNANTAPPVVGGNKNVNGNRNNSKMYNRPPVTAPPAPAYTRSTNGRPQRGYR", "sequence_length": 240, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ee40ca566378c288b71e25095b1dcf9e6296e053d4793db4548169dacae47da9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06170.json", "taxon_id": "559292", "uniprot_accession": "Q06170", "uniprot_release": "2026_03" } ], "pfam_id": "PF13430", "short_name": "DUF4112", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4113-pf13438.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13438", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4113-pf13438.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/ims-hhh-pf11798.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11798", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/ims-hhh-pf11798.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P04152", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00817", "PF11798", "PF11799", "PF13438" ], "protein_name": "Protein UmuC", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "99aae6c08ac1ce294d5b06ba0b3decf0580f8cd52275a97b203f164d7b9a9944", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRVK", "sequence_length": 422, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "99aae6c08ac1ce294d5b06ba0b3decf0580f8cd52275a97b203f164d7b9a9944", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P04152.json", "taxon_id": "83333", "uniprot_accession": "P04152", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4113-pf13438.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13438", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4113-pf13438.yaml" } ], "pfam_ids": [ "PF00817", "PF11799", "PF13438" ], "protein_name": "Protein MucB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFALIDVNGMYASCEQAFRPDLANRAVAVLSNNDGNIVARNYLAKKAGLKMGDPYFKVRPIIERHNIAIFSSNYTLYASMSARFAAVVESLASHVEQYSIDELFVDCKGITAAMSLDAFGRQLREEVRRHTTLVCGVGIARTKTLAKLCNHAAKTWPATGGVVALDDGARLKKLMSILPVAEVWGVGHRTEKALATMGIKTVLDLARADTRLIRKTFGVVLERTVRELRGEACFSLEENPPAKQQIVVSRSFGQRVETLTDMQQAVTGFAARAAEKLRNERQYCRVISVFIRTSPYSVRDTQYANQATEKLTVATQDSRTIIQAAQAALARIWREDIAYAKAGVMLADFSGKEAQLDLFDSATPSAGSEALMAVLDGINRRGKNQLFFAGQGIDNSFAMRRQMLSPDYTTDWRSIPIATIK", "sequence_length": 421, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f14f2052b88706865e6be60563694b20ae2178be3f00f04ad886d69ae5e96c15", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P14303.json", "taxon_id": "90371", "uniprot_accession": "P14303", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4113-pf13438.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13438", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4113-pf13438.yaml" } ], "pfam_ids": [ "PF00817", "PF11798", "PF11799", "PF13438" ], "protein_name": "Protein UmuC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFALCDVNSFYASCETVFRPDLCGRPVVVLSNNDGCVIACSAEAKQLGIAPGEPYFKQKERFRRSGVVCFSSNYELYADMSNRVMTTLEEMVPRVEIYSIDEAFCDLTGVRNCRDLTDFGREIRATVLKRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTDGVVDLSNIDRQRRLLALIPVEDVWGVGRRISKKLNALGIKTALDLSEQSTWIIRKHFNVVLERTVRELRGEPCLELEEFAPAKQEIVCSRSFGERVTDYEEMRQAVYSYAARAAEKLRGEHQYCRFISTFVKTSPFALNEPYYGNSAAVTLLTPTQDSRDIINAAVKCLDKIWRDGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRAGSAKLMEVLDHLNAKDGKGTLYFAGQGMSQQWAMKREMLSPRYTTRYSDLLRVK", "sequence_length": 422, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "936801f36bf2c3948bf193836201073343a560f754aade463e88370f6c79b092", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P22494.json", "taxon_id": "99287", "uniprot_accession": "P22494", "uniprot_release": "2026_03" } ], "pfam_id": "PF13438", "short_name": "DUF4113", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13448", "short_name": "DUF4114", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Yersinia pestis (strain Pestoides F)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-25-pf13413.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13413", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-25-pf13413.yaml" } ], "pfam_ids": [ "PF13413", "PF13464" ], "protein_name": "Cytoskeleton protein RodZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTFHRGYIRSYAKLVHLPEDELLPILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLIVLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQPVPLTDDNSDAIAPTDAPAPVANGQPVPLTNHSGSAITNSATTSSVPKTTSTEPVDTANTNTTMHQEGAASAAVSPSQVPQPGMPTGQPPLPTADAGVSGSASSVGALVMNFTADCWLQVVDATGKTLFSGIQKGGAVLNLAGKAPYKLTIGAPGALTISYQGNPVDLSKFIKANRVARLTVGVE", "sequence_length": 345, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d0de7f42db65eb929f1313dae9d560a8b42181017051a29383e0e48831796e1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4TMT8.json", "taxon_id": "386656", "uniprot_accession": "A4TMT8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-25-pf13413.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13413", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-25-pf13413.yaml" } ], "pfam_ids": [ "PF13413", "PF13464" ], "protein_name": "Cytoskeleton protein RodZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTFHRGYIRSYAKLVHLPEDELLPILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLIVLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQPVPLTDDNRDAIAPTDAPAPVANGQPVPLTNHSVSAITNSAPTTSSVPTTSSATTSSVPTTSSVPKINSTEPVDTANTNTTMHQEGAASAAVSPSQVPQPGMPTGQPPLPTADAGVSGSASSVGALVMNFTADCWLQVVDATGKTLFSGIQKGGAVLNLAGKAPYKLTIGAPGALTISYQGNPVDLSKFIKANRVARLTVGVE", "sequence_length": 363, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f8e32e29e6c938bd21bb8cf06e0b9d02bfd6fb71773c444ad1b73933a72d86d8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A7FFY8.json", "taxon_id": "349747", "uniprot_accession": "A7FFY8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caldithrix abyssi (strain DSM 13497 / VKM B-2286 / LF13)", "origins": [ { "cited_uniprot_accession": "H1XNL6", "commit": "62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "TraitMech", "path": "data/traits/morphology/bacillus_shaped.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "METPO:1000667", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/TraitMech/blob/62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b/data/traits/morphology/bacillus_shaped.yaml" }, { "cited_uniprot_accession": "H1XNL6", "commit": "62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "TraitMech", "path": "data/traits/morphology/fusiform_shaped.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "METPO:1000690", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/TraitMech/blob/62f45e1749fa3d3e5ca8b9a3a4ba5bb0361beb8b/data/traits/morphology/fusiform_shaped.yaml" } ], "pfam_ids": [ "PF13413", "PF13464" ], "protein_name": "Cytoskeleton protein RodZ-like C-terminal domain-containing protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MGEQKDFNQILQELKTLREEKGITLEQISAQTKIKLIYLKQLEEGQLDKLPGVYDRFIFKTYLEKIGAENFNDLLHRFDAETGRLPGETTIVRQLKEKNKKQFISEFTLLKAIYIFIPILILIALFVIFFKNYKPKDDLQKSSVKELTAMDIVQQSLAQTETQQAAGAVDDSLLVEIRARDYCWLLHIKDHRDTSDVTLAPNTMIKVRADSVVELRMGNPAAVWMTVNEQKFDSLAAPGQVISYMKVTREGIVTKRVVKPRKKETTNESSQTQ", "sequence_length": 273, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "42e854e2aaf888e173b2f413dfa7596650ef55d2fe3d05c0ac1259cd674bdad9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/H1XNL6.json", "taxon_id": "880073", "uniprot_accession": "H1XNL6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cytoskeleton-protein-rodz-like-c-terminal-domain-ipr025194.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025194", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cytoskeleton-protein-rodz-like-c-terminal-domain-ipr025194.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rodz-c-pf13464.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13464", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rodz-c-pf13464.yaml" } ], "pfam_ids": [ "PF13413", "PF13464" ], "protein_name": "Uncharacterized membrane protein YmfM", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLDDLQAATKIQKRYLTALEEGNYDIIPGKFYVRAFIKQYAEAVGLDADQLFEEHKKDIPNTYHDDVSEKISGMNLQKEMPKPASKALELLPTILVILGVIVVIAIVYAIIQFANHKNSDDHNAASEKAITQSESKYEIPKDSTLKENQNNSSEKETDTKKETKENEDKKKENDSEKLEIKAAGTEGSLTTYEVSGADKIELELKASDSSWIRVRDENSSSLKEGTLKKDETYKKDITDQKQVDIRTGYAPNLKIKINGKVLSYELDPKKVMAQTIKIVNKKEEKSS", "sequence_length": 288, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b4d1359be3dd74ecdf87728f350e9ddff5b29d87000c461a21012a7f668f6479", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O31771.json", "taxon_id": "224308", "uniprot_accession": "O31771", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "P27434", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/cytoskeleton/mreb_filament.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "cellstructuremech:mreb_filament", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/cytoskeleton/mreb_filament.yaml" }, { "cited_uniprot_accession": "P27434", "commit": "937ba6254eb987adcbd92e82b21b2ce8651dc5e3", "link_basis": [ "uniprot_pfam_xref" ], "mech": "CellStructureMech", "path": "data/structures/division_machinery/elongasome.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "cellstructuremech:elongasome", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/CellStructureMech/blob/937ba6254eb987adcbd92e82b21b2ce8651dc5e3/data/structures/division_machinery/elongasome.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/cytoskeleton-protein-rodz-nf008109.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008109", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/cytoskeleton-protein-rodz-nf008109.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cytoskeleton-protein-rodz-like-c-terminal-domain-ipr025194.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025194", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cytoskeleton-protein-rodz-like-c-terminal-domain-ipr025194.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-25-pf13413.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13413", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-25-pf13413.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rodz-c-pf13464.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13464", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rodz-c-pf13464.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P27434", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF13413", "PF13464" ], "protein_name": "Cytoskeleton protein RodZ", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "15f85b35b8ce1e9e5771d9eb74f083ca11e4eca30e599423d01e39f9e86f91e4", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDRKAQQEEITTMADQSSAELSSNSEQGQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQSPAQ", "sequence_length": 337, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "15f85b35b8ce1e9e5771d9eb74f083ca11e4eca30e599423d01e39f9e86f91e4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P27434.json", "taxon_id": "83333", "uniprot_accession": "P27434", "uniprot_release": "2026_03" } ], "pfam_id": "PF13464", "short_name": "RodZ_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13475", "short_name": "DUF4116", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ftsk-4tm-pf13491.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13491", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ftsk-4tm-pf13491.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ftsk-alpha-pf17854.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17854", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ftsk-alpha-pf17854.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ftsk-gamma-pf09397.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09397", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ftsk-gamma-pf09397.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ftsk-spoiiie-pf01580.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01580", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ftsk-spoiiie-pf01580.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P46889", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01580", "PF09397", "PF13491", "PF17854" ], "protein_name": "DNA translocase FtsK", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "836b208f79fedd884f21bd3a1c685d793ab95080529d4c41b8923591d4f5b63a", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSQEYIEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVPPQPQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQQQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD", "sequence_length": 1329, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "836b208f79fedd884f21bd3a1c685d793ab95080529d4c41b8923591d4f5b63a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P46889.json", "taxon_id": "83333", "uniprot_accession": "P46889", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ftsk-4tm-pf13491.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13491", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ftsk-4tm-pf13491.yaml" } ], "pfam_ids": [ "PF01580", "PF09397", "PF13491", "PF17854" ], "protein_name": "DNA translocase FtsK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSKTVARSGTRTSRSKATSRGASRSARSAVPRKRSRPVKGVGRPSRRHHRSLLVSTGLACGRAMRAVWMMAAKGTGGAARSIGRARDIEPGHRRDGIALVLLGLAVVVAASSWFDAARPLGAWVDALLRTFIGSAVVMLPLVAAAVAVVLMRTSPNPDSRPRLILGASLIGLSFLGLCHLWAGSPEAPESRLRAAGFIGFAIGGPLSDGLTAWIAAPLLFIGALFGLLLLAGITIREVPDAMRAMFGTRLLPREYADDFEDFADFDGDDADTVEVARQDFSDGYYDEVPLCSDDGPPAWPSAEVPQDDTATIPEASAGRGSGRRGRRKDTQVLDRIVEGPYTLPSLDLLISGDPPKKRSAANTHMAGAIGEVLTQFKVDAAVTGCTRGPTVTRYEVELGPGVKVEKITALQRNIAYAVATESVRMLAPIPGKSAVGIEVPNTDREMVRLADVLTARETRRDHHPLVIGLGKDIEGDFISANLAKMPHLLVAGSTGSGKSSFVNSMLVSLLTRATPEEVRMILIDPKMVELTPYEGIPHLITPIITQPKKAAAALAWLVDEMEQRYQDMQASRVRHIDDFNDKVRSGAITAPLGSQREYRPYPYVVAIVDELADLMMTAPRDVEDAIVRITQKARAAGIHLVLATQRPSVDVVTGLIKTNVPSRLAFATSSLTDSRVILDQAGAEKLIGMGDGLFLPMGASKPLRLQGAYVSDEEIHAVVTACKEQAEPEYTEGVTTAKPTAERTDVDPDIGDDMDVFLQAVELVVSSQFGSTSMLQRKLRVGFAKAGRLMDLMETRGIVGPSEGSKAREVLVKPDELAGTLAAIRGDGGE", "sequence_length": 831, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "114c92b6f478f17bc22b64e2abfb2eeef04ba9f1c71c89200ccaebf0de577ae3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WNA3.json", "taxon_id": "83332", "uniprot_accession": "P9WNA3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ftsk-4tm-pf13491.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13491", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ftsk-4tm-pf13491.yaml" } ], "pfam_ids": [ "PF01580", "PF09397", "PF13491", "PF17854" ], "protein_name": "DNA translocase FtsK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRKNSDLKDSTTASHAAAWRQQLHSRLKEGVLIALGALCLYLWMALLTYDSADPSWSHSSQVDQVQNAAGRLGAVSADILFMTLGYFAYLFPLLLGIKTWQVFRRRNLPWEWNTWLFSWRLVGLIFLILAGSALAYIHFHASGHMPASASAGGAIGQSLGRVAVDALNVQGSTLVFFALFLFGLTVFADLSWFKVMDVTGKITLDFFELIQNAFNRWMGARAERKQLVAQLREVDERVAEVVAPSVPDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFVDTAVEGTLPPLSLLDPAEVKQKSYSPESLEAMSRLLEIKLKEFGVEVSVDSVHPGPVITRFEIQPAAGVKVSRISNLAKDLARSLAVISVRVVEVIPGKTTVGIEIPNEDRQMVRFSEVLSSPEYDEHKSTVPLALGHDIGGRPIITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEMERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQGGAEQLLGHGDMLYLPPGTGLPIRVHGAFVSDDEVHRVVEAWKLRGAPDYIEDILAGVDEGGGGGGSFDGGDGSGEGSEDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPVRD", "sequence_length": 811, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4ab67eb528a9ade33ad2531daef6c638062cfcb236a2d0b53d0fa4d04c253e09", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9I0M3.json", "taxon_id": "208964", "uniprot_accession": "Q9I0M3", "uniprot_release": "2026_03" } ], "pfam_id": "PF13491", "short_name": "FtsK_4TM", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4118-pf13493.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13493", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4118-pf13493.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gaf-3-pf13492.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13492", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gaf-3-pf13492.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kdpd-pf02702.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kdpd-pf02702.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P21865", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00512", "PF02518", "PF02702", "PF13492", "PF13493" ], "protein_name": "Sensor protein KdpD", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "59d596ce23cfceca3c089d5b4c7ae26c1e2facdab151d03a40183a862ce8575c", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNNEPLRPDPDRLLEQTAAPHRGKLKVFFGACAGVGKTWAMLAEAQRLRAQGLDIVVGVVETHGRKDTAAMLEGLAVLPLKRQAYRGRHISEFDLDAALARRPALILMDELAHSNAPGSRHPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGVTGIQVRETVPDPFFDAADDVVLVDLPPDDLRQRLKEGKVYIAGQAERAIEHFFRKGNLIALRELALRRTADRVDEQMRAWRGHPGEEKVWHTRDAILLCIGHNTGSEKLVRAAARLASRLGSVWHAVYVETPALHRLPEKKRRAILSALRLAQELGAETATLSDPAEEKAVVRYAREHNLGKIILGRPASRRWWRRETFADRLARIAPDLDQVLVALDEPPARTINNAPDNRSFKDKWRVQIQGCVVAAALCAVITLIAMQWLMAFDAANLVMLYLLGVVVVALFYGRWPSVVATVINVVSFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRYQARVARYREQRTRHLYEMSKALAVGRSPQDIAATSEQFIASTFHARSQVLLPDDNGKLQPLTHPQGMTPWDDAIAQWSFDKGLPAGAGTDTLPGVPYQILPLKSGEKTYGLVVVEPGNLRQLMIPEQQRLLETFTLLVANALERLTLTASEEQARMASEREQIRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQTIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLPQQTAPELEEFHEDM", "sequence_length": 894, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "59d596ce23cfceca3c089d5b4c7ae26c1e2facdab151d03a40183a862ce8575c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P21865.json", "taxon_id": "83333", "uniprot_accession": "P21865", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4118-pf13493.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13493", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4118-pf13493.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kdpd-pf02702.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kdpd-pf02702.yaml" } ], "pfam_ids": [ "PF00512", "PF00582", "PF02518", "PF02702", "PF13493" ], "protein_name": "Sensor protein KdpD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLLFADLCAIFTPYRWMIEHVTTKRGQLRIYLGAAPGVGKTYAMLGEAHRRLERGTDVVAAVVETHGRNKTAKLLEGIEMIPPRYVEYRGARFPELDVEAVLRRHPQVVLVDELAHTNTPGSKNPKRWQDVQEILDAGITVISTVNIQHLEGLNDVVEQITGIEQKEKIPDEIVRAADQVELVDITPEALRRRLAHGNVYAAERVDAALSNYFRTGNLTALREIALLWLADQVDAALEKYRADKKITATWEARERVVVAVTGGPESETLVRRASRIASKSSAELMVVHVIRGDGLAGVSAPQLGRVRELATSLGATMHTVVGDDVPTALLDFAREMNATQLVVGTSRRSRWARLFDEGIGARTVQEPGGIDVHMVTHPAASRASGWSRVSPRERHIASWLAALVVPSVICAITVAWLDRFMGIGGESALFFIGVLIVALLGGVAPAALSALLSGMLLNYFLTEPRYTWTIAEPDAAVTEFVLLAMAVAVAVLVDGAASRTREARRASQEAELLALFAGSVLRGADLATLLQRVRETYSQRAVTMLRVRQGASTGETVACVGTNPCRDVDSADTAIEVGDDEFWMLMAGRKLAARDRRVLTAVATQAAGLVKQRELAEEAGQAEAIARADELRRSLLSAVSHDLRTPLAAAKVAVSSLRTEDVAFSPEDTAELLATIEESIDQLTALVANLLDSSRLAAGVIRPQLRRAYLEEAVQRALVSIGKGATGFYRSGIDRVKVDVGDAVAMADAGLLERVLANLIDNALRYAPDCVVRVNAGRVRERVLINVIDEGPGVPRGTEEQLFAPFQRPGDHDNTTGVGLGMSVARGFVEAMGGTISATDTPGGGLTVVIDLAAPEDRP", "sequence_length": 860, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c8a66d5ab7ddb008308f4aa780fc6717b9dac933930acf0178f03ef9649861e6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WGL3.json", "taxon_id": "83332", "uniprot_accession": "P9WGL3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain NCTC 8325 / PS 47)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4118-pf13493.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13493", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4118-pf13493.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kdpd-pf02702.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kdpd-pf02702.yaml" } ], "pfam_ids": [ "PF00512", "PF02518", "PF02702", "PF13493" ], "protein_name": "Sensor histidine kinase KdpD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNTESLNIGKKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKITTNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVHTTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKKDRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNEAVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTVALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELKMNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTIILMIFLIGIILLSIWTRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPITFIVSILTSILTSALLKQIKFQYSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTIPLQNHIDNTTQQHEQALSWVIKNERQAGATTDTFPGINKWLIPIGTSPIKGILAIDYQSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRTPLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKLQPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTSTDTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLYLVQTILHKHQSNLQYKPNQPHGSIFYFNIYTDFNEGDV", "sequence_length": 885, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6a036e38a808b27f32e42a9e665aa58bd376e3a9765bd0cfa5e0efe4c605ec2d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2FWH7.json", "taxon_id": "93061", "uniprot_accession": "Q2FWH7", "uniprot_release": "2026_03" } ], "pfam_id": "PF13493", "short_name": "DUF4118", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13494", "short_name": "DUF4119", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13496", "short_name": "DUF4120", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13497", "short_name": "DUF4121", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13498", "short_name": "DUF4122", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4123-pf13503.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13503", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4123-pf13503.yaml" } ], "pfam_ids": [ "PF13503" ], "protein_name": "Accessory protein VasW", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSTNSFVVHNWVSLVPEMEMDTQERLYLLVDGAQISHLAQALYRLSGELVLEPLYLFPPFEQLKEVSPYLVLATDTVKTWFLEQNQGLAGFFFASLDSIEEIAEQLRRLIQVESPYGSTVFLKMANSECAYVLLSTQCQPLWKVINRAWLPTRQGWQYVQRPELTATQDTPVRFKLTDEQWQRLGNITWLNTLETVERHVQQWFPDLAQQWQSDPELFHRHAQWAYQQGFSSERDLMLFFNVLGFLGVDALEKGKYPEIDPLLHQASSRTPSQRIEAAAELAYQHSQSSQEVQG", "sequence_length": 295, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c812dfa9e6595363b0fd8dfc900fb74a865e300b4b6eddfbc03db17580754206", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9KNE6.json", "taxon_id": "243277", "uniprot_accession": "Q9KNE6", "uniprot_release": "2026_03" } ], "pfam_id": "PF13503", "short_name": "DUF4123", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13511", "short_name": "DUF4124", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13526", "short_name": "DUF4125", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13548", "short_name": "DUF4126", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13552", "short_name": "DUF4127", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13554", "short_name": "Phage_tail_terminator_5", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-glutamine-gamma-glutamyltransferase-tgpa-n-terminal-ipr021878.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4129-pf13559.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13559", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4129-pf13559.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tgpa-n-pf11992.yaml", 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"path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P94476", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01841", "PF11992", "PF13559" ], "protein_name": "Uncharacterized protein YebA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "44fa5108722cf9cdeb4f8584e4c8d299084e9128f80d10660a86fa71bae58a02", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": 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"https://rest.uniprot.org/uniprotkb/P94476.json", "taxon_id": "224308", "uniprot_accession": "P94476", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4129-pf13559.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13559", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4129-pf13559.yaml" } ], "pfam_ids": [ "PF01841", "PF11992", "PF13559" ], "protein_name": "Protein-glutamine gamma-glutamyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNAIPRVALVWLLVAQVLVILPHLAYMPLWIAAMWLGCAAWRVQVFRMRAGYPRAWVKLALALLAGAGVWLSRGSLVGLDAGAVLLIAAFILKLVEMKTRRDALVLVFLGFFAVVVGYLFDDGFLAALYSLLPVTALLAALIGLQQSAFASRPWPTLRLAGGLLLQALPLMLLLFLFFPRLGPLWSLPMPGNKGVTGLSESMAPGDIAELGRSAELAFRVRFEGALPPREQLYWRALTMERFDGRRWAQAPQWSGEDALHWQKRGPELRYDVIMQPSSQPWLFALDVAQTDQTDTRLMSDFHLQRRQPVEQRLFYRVSSWPQALRESSIDPRTRWRNLQLPMHGNPRARALADELRQAHAQPQALVAALLQRFNHEPFAYTLKPPATGADGVDDFLFDTRSGFCAHYAGAMAFVLRAAGIPARVVAGYQGGELNPAGNYLLVHQFDAHAWVEYWQPEQGWLSVDPTYQVAPERIEQGLEQALAGDSEYLADAPLSPLRYRGLPWLNDMRLAWDSLNYGWQRWVLAYQGEQQGAFLQRWFGGLDPTRLGLLLGAAAILSVGLLALFLLKPWQGRGDLRSRQLRRFERLLEMHGLRRSPGEGLRSYGERAARVLPAQAPAIAAFVGAFEAQRYGHGGADDPGLRLRALRRALPWRLVRTPTRDGRGEEQA", "sequence_length": 668, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0ef035cbbcb6d05ceb44de0a79c0296ec1e93fafd3fff0368a8c98d6c7a80252", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HZX3.json", "taxon_id": "208964", "uniprot_accession": "Q9HZX3", "uniprot_release": "2026_03" } ], "pfam_id": "PF13559", "short_name": "DUF4129", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13566", "short_name": "DUF4130", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/dna-internalization-related-competence-protein-comec-rec2-tigr00361.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00361", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/dna-internalization-related-competence-protein-comec-rec2-tigr00361.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/competence-protein-coma-comec-and-related-proteins-mbl-fold-metallo-hy-cd07731.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd07731", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/competence-protein-coma-comec-and-related-proteins-mbl-fold-metallo-hy-cd07731.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coma-like-mbl-domain-ipr035681.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035681", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coma-like-mbl-domain-ipr035681.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/comec-like-n-terminal-domain-ipr025405.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025405", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/comec-like-n-terminal-domain-ipr025405.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/comec-rec2-related-protein-ipr004477.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR004477", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/comec-rec2-related-protein-ipr004477.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/ncbifam/comec-rec2-related-protein-tigr00360.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00360", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/ncbifam/comec-rec2-related-protein-tigr00360.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4131-pf13567.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13567", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4131-pf13567.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/competence-pf03772.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03772", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/competence-pf03772.yaml" } ], "pfam_ids": [ "PF00753", "PF03772", "PF13567" ], "protein_name": "ComE operon protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNSRLLLPMAAASATAGITAAAYFPAIFLFILFLLIILIKTRHAFLIIVCFFSFILFFVLYAVTDSQNVSSYRQGTYQFKAVIDTIPKIDGDRMSMMVETPDKEKWAAAYRIQSAGEKEQLLYIEPGMSCELTGTLEEPNHATVPGAFDYNEYLYRQHIHWNYSVTSIQNCSEPENFKYKVLSLRKHIISFTNSLLPPDSTGIVQALTVGDRFYVEDEVLTAYQKLGVVHLLAISGLHVGILTAGLFYIMIRLGITREKASILLLLFLPLYVMLTGAAPSVLRAALMSGVYLAGSLVKWRVRSATAICLSYIVLLLFNPYHLFEAGFQLSFAVSFSLILSSSIFQQVKTSLGQLTIVSLIAQLGSLPILLYHFHQFSIISVPMNMLMVPFYTFCILPGAVAGVLLLSLSASFGRLFFSWFDLLISWINRLITNIADVDVFTIMIAHPAPVLLFLFTVTIILLLMAIEKRSLSQLMVTGGICCTVMFLLFIYPCLSSEGEVDMIDIGQGDSMFVGAPHQRGRVLIDTGGTLSYSSEPWREKQHPFSLGEKVLIPFLTAKGIKQLDALILTHADQDHIGEAEILLKHHKVKRLVIPKGFVSEPKDEKVLQAAREEGVAIEEVKRGDVLQIKDLQFHVLSPEAPDPASKNNSSLVLWMETGGMSWILTGDLEKEGEQEVMNVFPNIKADVLKVGHHGSKGSTGEEFIQQLQPKTAIISAGKNNRYHHPHQKVLQLLQRHSIRVLRTDQNGTIQYRYKNRVGTFSVYPPYDTSDITETN", "sequence_length": 776, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "06a60c0d715af216f09a222eaa5be0e7aac24a6b182c3dba46b9bd6f08dd8902", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P39695.json", "taxon_id": "224308", "uniprot_accession": "P39695", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4131-pf13567.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13567", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4131-pf13567.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/competence-pf03772.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03772", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/competence-pf03772.yaml" } ], "pfam_ids": [ "PF00753", "PF03772", "PF13567" ], "protein_name": "Recombination protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLNLITLVVLLIVADLTLLFLPQPLLLPWQVALVIALVLIFLFIFLRRNFLVSLAFFVASLGYFHYSALSLSQQAQNITAQKQVVTFKIQEILHQQDYQTLIATATLENNLQEQRIFLNWKAKEVPQLSEIWQAEISLRSLSARLNFGGFDRQQWYFSKGITAVGTVKSAVKIADVSSLRAEKLQQVKKQTEGLSLQGLLIALAFGERAWLDKTTWSIYQQTNTAHLIAISGLHIGLAMGIGFCLARVVQVFFPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVLFIQIMRRHYSPIQFFTLVVGFLLFCDPLMPLSVSFWLSCGAVGCLLLWYRYVPFSLFQWKNRPFSPKVRWIFSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLANFMAVPIYSFLLVPLILFAVFTNGTMFSWQLANKLAEGITGLISVFQGNWLTVSFNLALGLTALCAGIFMLIIWNIYREPEISSSNWQIKRAKFFTLNLSKPLLKNERINVLRCSFGIILLCFTILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYDTGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQGLHFQILSPHNVVTRADNSHSCVILVDDGKNSVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVAIISSGRWNPWKFPHYSVMERLHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTKFSPWYARVIGLSKE", "sequence_length": 788, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "15a59fc4813d13d0fa8ef1a56a2c01983b987c4b5164d8bc68a4223c572a11ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44408.json", "taxon_id": "71421", "uniprot_accession": "P44408", "uniprot_release": "2026_03" } ], "pfam_id": "PF13567", "short_name": "DUF4131", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4132-ipr025406.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025406", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4132-ipr025406.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4132-pf13569.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13569", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4132-pf13569.yaml" } ], "pfam_ids": [ "PF13569", "PF29395" ], "protein_name": "Uncharacterized protein YehI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKELPWLADNAQLELKYKKGKTPLSHRRWPGEPVSVITGSLIQTLGDELLQKAEKKKNIVWRYENFSLEWQSAITQAINLIGEHKPSIPARTMAALACIAQNDSQQLLDEIVQQEGLEYATEVVIARQFIARCYESDPLVVTLQYQDEDYGYGYRSETYNEFDLRLRKHLSLAEESCWQRCADKLIAALPGINKVRRPFIALILPEKPEIANELVGLECPRTHFHSKEWLKVVANDPTAVRKLEHYWSQDIFSDREASYMSHENHFGYAACAALLREQGLAAIPRLAMYAHKEDCGSLLVQINHPQVIRTLLLVADKNKPSLQRVAKYHKNFPHATLAALAELLALTEPPARPGYPIIEDKKLPAQQKARDEYWRTLLQTLMASQPQLAAEVMPWLSTQPQSVLKSYLSAPPKPVIDGTDNSNLPEILVSPPWRSKKKMTAPRLDLAPLELTPQVYWQPGEQERLAATEPARYFSTESLAQRMEQKSGRVVLQELGFGDDVWLFLNYILPGKLDAARNSLFVQWHYYQGRVEEILNGWNSPEAQLAEQALRSGHIEALINIWENDNYSHYRPEKSVWNLYLLAQLPREMALTFWLRINEKKHLFAGEDYFLSILGLDALPGLLLAFSHRPKETFPLILNFGATELALPVAHVWRRFAAQRDLARQWILQWPEHTASALIPLVFTKPSDNSEAALLALRLLYEQGHGELLQTVANRWQRTDVWSALEQLLKQGPMDIYPARIPKAPDFWHPQMWSRPRLITNNQTVTNDALEIIGEMLRFTQGGRFYSGLEQLKTFCQPQTLAAFAWDLFTAWQQAGAPAKDNWAFLALSLFGDESTARDLTTQILAWPQEGKSARAVSGLNILTLMNNDMALIQLHHISQRAKSRPLRDNAAEFLQVVAENRGLSQEELADRLVPTLGLDDPQALSFDFGPRQFTVRFDENLNPVIFDQQNVRQKSVPRLRADDDQLKAPEALARLKGLKKDATQVSKNLLPRLETALRTTRRWSLADFHSLFVNHPFTRLVTQRLIWGVYPANEPRCLLKAFRVAAEGEFCNAQDEPIDLPADALIGIAHPLEMTAEMRSEFAQLFADYEIMPPFRQLSRRTVLLTPDESTSNSLTRWEGKSATVGQLMGMRYKGWESGYEDAFVYNLGEYRLVLKFSPGFNHYNVDSKALMSFRSLRVYRDNKSVTFAELDVFDLSEALSAPDVIFH", "sequence_length": 1210, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95fc7f0821628cb2fc023204875d6795422f5500fb9dc97411e34e003e17f1db", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P33346.json", "taxon_id": "83333", "uniprot_accession": "P33346", "uniprot_release": "2026_03" } ], "pfam_id": "PF13569", "short_name": "DUF4132", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13571", "short_name": "DUF4133", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13572", "short_name": "DUF4134", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lactococcus lactis subsp. lactis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4135-pf13575.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13575", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4135-pf13575.yaml" } ], "pfam_ids": [ "PF05147", "PF13575" ], "protein_name": "Lacticin 481/lactococcin biosynthesis protein LcnDR2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKKTYQFEKFLKNTFDQFSIKQNEVLVEDDLNDIIMNVCGKALVLMINEKREMNLLMGNTPEERYQYFENEYSSTGKAFEEIKDKFPVIYIDLKNSINSYLKLVSQIMKDFKKDYSLLVERKIIEEHSTISTMKIKGDLHNGKAVIEITTNKSKLIYKPKSLSNDVFFNNFLKYMDSFFIKEGKSTKYKENFYLVNTLDMKTYGWVEYVDKKPINSFEEARNYYRKIGVLLSVAYTLNLTDLHFENVISQGENPCIIDLETMFNMPMFVKDYKNESRNIINGKIMDSVVSTGMLPVLGIDSLFGGDPSGILGGTFSKEERVIINPFRDDIKFQKIVVRSVFKDHIPFFNNNNEKRYCKPKDYVNDIIKGFEKTYKIIVKNKEKILGFLKKESSSVTCRILFRNTMEYSVLLNAAKSPVYSNKREEIFEKLSTFNRGLGNDIIKSEISQINTLSIPYFNCQVDSNLIKNMDGETIFEHTLTPFKCFLSKYRRLCVDDMEQQVKLIRFSIQSQEQLFKDGEQFSLYKKQKGSQEDLLIAINELSSILENNAYIGTSDDTINWMSLGIADNDQILFESLENDIYKGISGIGLALLEYYEFYPNINTKKILKLIYKNISKDFINTNNEPQNYGFYVGLIGEYSFLRKYEKVFHKTSSCNILKNILKDFTPEKCQTILPSDDVIAGEAGIIIYISNLNNYLEYRDEIDILLKSLSNKIKLKESIASYAHGNSGIATAFVHGYKVTKNEKYLKIFHELWNLENSSKLRRGWTDSRKVDSSYSSQWCHGASGQAIARMEWITVNKTARFLSNSELIKVKKELGELIDILKKEGMYTDNFCLCHGILGNLLILNTYQENFDNKNINLKNEILNNYYSVCNYGLNKGWICGLGTEFYSYGLMTGISGILYGLIRQVKQKNNFGVLMPYVD", "sequence_length": 922, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "98dd322ee36a59bd087dad4d9b05ddf6df8066178f9a39d1311017132beaf31c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37609.json", "taxon_id": "1360", "uniprot_accession": "P37609", "uniprot_release": "2026_03" } ], "pfam_id": "PF13575", "short_name": "DUF4135", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13584", "short_name": "BatD", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4136-pf13590.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4136-pf13590.yaml" } ], "pfam_ids": [ "PF13590" ], "protein_name": "Uncharacterized protein ZMO1243", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRHLITISQPAIPQDVTNKDGHKAKKQLRCKGIYPFLWMFFFAAALPLQATQPIEVTRFHKSDMATTGIVNIMPHDPTLRNTLEYQRYTASIARNLTRIGFQVTDNPQQAEYTMMYDVMRGTHYRDNGQTPPRDTRPHGGISLGGGYGGGGGFGGGGVGWGGGGSGISIGGGGGGGRGFGGGGGGISAGISVPVGNGYHTSNKVETILTAQLSRRDTHQAIWEGRARTEAKSNKAESTPDIAVDRLATAMFGQFPGESGETEKVK", "sequence_length": 265, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aea4b81aedf3194298800d45d93be3ce143a236944328ac28230699b9cb3afed", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P30794.json", "taxon_id": "264203", "uniprot_accession": "P30794", "uniprot_release": "2026_03" } ], "pfam_id": "PF13590", "short_name": "DUF4136", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sbf-like-pf13593.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13593", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sbf-like-pf13593.yaml" } ], "pfam_ids": [ "PF13593" ], "protein_name": "Probable sodium/metabolite cotransporter BASS4, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIASTLASTQNPFLCLRQPPSPGNRSVVFRRCQDPCGRRWISRSIRACQPSDKVSGQFPFDFMYSSMLIPSSCGEWNRIHLGGDGGISASAQRLYFGKELLSFASDNFLPLALVSGVGLGFANPTLGCLADKYSFTKISTCGIFIISGLTLRTEAIGAAVKGWPLGLFGLISILLLTPSFSRLIMLVQLQPRELVTGLGIFCCMPTTLSSGVALTHLAGGNAALALAVTVASNLLGILTIPFWVSRYIAGGVGVSFPTDQLFRSLIVTLLIPLIIGKVIRESFKGFANFVDNNRKLFSKINAICLSLVPWIQVSRSRSLLLSVQPKVFLAAVGIGILLHLSLLAFNAVSIRILSGLTGGSKSSKENSTAVLLVSSQKTLPVMVAVVEQLGGAFGETGLLVLPCVAAHLNQIMIDSVLVNLWLRRGKDTSTKVKTA", "sequence_length": 436, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6393766279b28c7559bf0cacc942691a5e481ad4a33e3615d0f35dec3526d85f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4IZC4.json", "taxon_id": "3702", "uniprot_accession": "F4IZC4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sbf-like-pf13593.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13593", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sbf-like-pf13593.yaml" } ], "pfam_ids": [ "PF13593" ], "protein_name": "Putative symporter YfeH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLFRILDPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIALLFFMHGAKLSREAIIAGGGHWRLHLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGFLYLCILPATVQSAIAFTSMAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNVHGAGGSLEQVGKIMLQLLLPFVLGHLSRPWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVNGIWHKVGWGSLLFIVVVSCVLLAIVIVVNVFMARRLSFNKADEITIVFCGSKKSLANGIPMANILFPTSVIGMMVLPLMIFHQIQLMVCAVLARRYKRQTEQLQAQQESSADKA", "sequence_length": 332, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5b1e93840d86294dc76c00611726c6e9ac5db45e6e7e0430be893123b092577f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P39836.json", "taxon_id": "83333", "uniprot_accession": "P39836", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sbf-like-pf13593.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13593", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sbf-like-pf13593.yaml" } ], "pfam_ids": [ "PF13593" ], "protein_name": "Solute carrier RCH1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTQYSLIRKIWAHSVTEFLKSQWFFICLAILIVIARFAPNFARDGGLIKGQYSIGYGCVAWIFLQSGLGMKSRSLMANMLNWRAHATILVLSFLITSSIVYGFCCAVKAANDPKIDDWVLIGLILTATCPTTVASNVIMTTNAGGNSLLCVCEVFIGNLLGAFITPALVQMFTNRAPFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKGTAYYLGFLKKYHIKIGSYMLLLIMFSSFSTAFYQDAFTSVSHVCIIFLCFFNLGIYIFFTGLSYLCARPWFILKLFPHEPIEGKSTRLYRYSYNIFRPFYYSKEDAICIMFCGPAKTAALGVSLITSQYGDKKEHLGKLLVPLVLYQVEQVMTANFFVSLFKRWIQKDAQADGSESSCANENEEVDLEKIISIGTGENQSVLSNNVPYTQPR", "sequence_length": 434, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b8aeecb98e1835283f8ff6dc85578b327d58a303b3861bfb7e33c986262bb2e7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q05131.json", "taxon_id": "559292", "uniprot_accession": "Q05131", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sbf-like-pf13593.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13593", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sbf-like-pf13593.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/sodium-solute-symporter-superfamily-ipr038770.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR038770", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/sodium-solute-symporter-superfamily-ipr038770.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-1530-20-1-20-1530-20.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1530.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-1530-20-1-20-1530-20.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q0GE19", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF13593" ], "protein_name": "Sodium/bile acid cotransporter 7", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "52e5e20ebc444c6912a660bb4f12bb9f68c33f5b46bcfececad18af6beefc936", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKTEELTSALVHLKLHLFIQIFTLAFFPATIWLFLQLLSITPINEWLLKGLQTVGCMPPPVSSAVILTKAVGGNEAAAIFNSAFGSFLGIVITPLLLLLFLGSSSSVPFTSIFSQLFMTVVVPLIIGQIVRRYIKDWLERKKPPFGAISSSVLLMIIYTTFCDTFSNPNIDLDKFSLVLILFIIFSIQLSFMLLTFIFSTRNNSGFTPADTVAIIFCSTHKSLTLGIPMLKIVFAGHEHLSLISVPLLIYHPAQILLGSVLVPTIKSWMVSRQKGVKLTRPTV", "sequence_length": 340, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "52e5e20ebc444c6912a660bb4f12bb9f68c33f5b46bcfececad18af6beefc936", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q0GE19.json", "taxon_id": "9606", "uniprot_accession": "Q0GE19", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sbf-like-pf13593.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13593", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sbf-like-pf13593.yaml" } ], "pfam_ids": [ "PF13593" ], "protein_name": "Uncharacterized protein YDR182W-A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKRYKLYRVWYYYAHQTVCITSTGFALCFVVQAKTAGLGVTPITSLYGDKKEHLGKLLVPLVLYQI", "sequence_length": 67, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ddd87e9de0d9fe3d3c078c3a87055920a20375bf3f5e7aee222a39c0d8df8634", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3E796.json", "taxon_id": "559292", "uniprot_accession": "Q3E796", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/sodium-solute-symporter-superfamily-ipr038770.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-1530-20-1-20-1530-20.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.1530.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-1530-20-1-20-1530-20.yaml" } ], "pfam_ids": [ "PF13593" ], "protein_name": "Sodium/bile acid cotransporter 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4149-pf13664.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13664", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4149-pf13664.yaml" } ], "pfam_ids": [ "PF13664" ], "protein_name": "Uncharacterized mitochondrial outer membrane protein YPR098C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCLVKTTAHLLFYSFVFGGTTFYSYVASPIAFKVLEKDQFSALQNKIFPYFFQMQAASPVILALTAPIALTTGPLSSLVVASVSGLTNLFWLLPWTHKVKEQRKNIAKKYTGSELEAKDAILRKEFGKSHGLSLLFNLSNVCGMLAYGVCLSGGLLRKIPK", "sequence_length": 161, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "146f3e8c0fe3910eab2ed561f78efe4695837ba500c01470982de949fe4ae3c0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q06089.json", "taxon_id": "559292", "uniprot_accession": "Q06089", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tmem205-like-ipr025423.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025423", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tmem205-like-ipr025423.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4149-pf13664.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13664", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4149-pf13664.yaml" } ], "pfam_ids": [ "PF13664" ], "protein_name": "Transmembrane protein 205", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEGGNLGGLIKMVHLLVLSGAWGMQMWVTFVSGFLLFRSLPRHTFGLVQSKLFPFYFHISMGCAFINLCILASQHAWAQLTFWEASQLYLLFLSLTLATVNARWLEPRTTAAMWALQTVEKERGLGGEVPGSHQGPDPYRQLREKDPKYSALRQNFFRYHGLSSLCNLGCVLSNGLCLAGLALEIRSL", "sequence_length": 189, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "36b4a4a12a876a9edff5531a9cebdfe6ba6a85aaf02719ca3c46a2436ae80198", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6UW68.json", "taxon_id": "9606", "uniprot_accession": "Q6UW68", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tmem205-like-ipr025423.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025423", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tmem205-like-ipr025423.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4149-pf13664.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13664", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4149-pf13664.yaml" } ], "pfam_ids": [ "PF13664" ], "protein_name": "Transmembrane protein 205", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKGEDPGSLIKVIHLLVLSGAWGMQVWVTFISGFLLFRSLPRHTFGLVQSKVFPVYFHVSLGCAFINLCILAPQRAWIHLTLWEVSQLSLLLLSLTLATINARWLEARTTAVMRALQSIEKERGLGTEVPGNFQGPDPYRQLRDKDPKYSALRRKFYHYHGLSSLCNLGCLLSNGLCLVGLALGLRSL", "sequence_length": 189, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8ba90161d34b190852ca901b6ffb477eee817c3b192094f8b0899e9773aab265", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91XE8.json", "taxon_id": "10090", "uniprot_accession": "Q91XE8", "uniprot_release": "2026_03" } ], "pfam_id": "PF13664", "short_name": "DUF4149", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13665", "short_name": "Tox-PAAR-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13680", "short_name": "DUF4152", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4153-pf13687.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13687", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4153-pf13687.yaml" } ], "pfam_ids": [ "PF13687" ], "protein_name": "Uncharacterized protein YhgE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDNVELSPATRWGMIATGLLQGLVCYLLIAWLSGKNHSWIVYGVPATVAFSSVLLFSVISFKQKRLWGWLALVFIATLGMSGWLKWQTDGMNPWRAEKALWDFGCYLLLMAMLLLPWIQQSLRIRNDSSRYRYFYQSVWHNVLILLVIFLANGLTWLVLLLWSELFKLVGITFFNTLFFATDWFIYLTLGLVTALAVILARTQSRLIDSIQKLFTLIATGLLPLVSLLTLMFIITLPFTGLSAISRHISAAGLLLTLAFLQLILMAIVRDPQKASLPWTGPLRCLIKTALLVAPLYVFVAAWALWLRVAQYGWTVDRLQGVLAVLVLLVWSLGYFVSIVWRKGQNPVVLQGKVNLAVSLLVLVILVLLNSPVLDSMRISVNSHMARYQSGKNTSDQVTIYMLEQSGRYGRAALESLKSDAGFMKDPKRARDLLMALDGEQHLQQQVSEKVLADNVLIAPGSVKPDATFWSALIQDRYNVMTCIEKDACVLVEQDLNSDGQAERILFAFNDDRVIVYGFDSDRKEWDALDMSLLPNEITKEKLLTAAKDGKLGTKPKAWRDLVVDGERLNVNLNE", "sequence_length": 574, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cf8637d5088e0d417dd93277e6875e01a2dd4c43495ea5e6e6dc40d44ffeb90b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P45804.json", "taxon_id": "83333", "uniprot_accession": "P45804", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pasteurella multocida (strain Pm70)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4153-pf13687.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13687", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4153-pf13687.yaml" } ], "pfam_ids": [ "PF13687" ], "protein_name": "Uncharacterized protein PM1469", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIIQSFTHRLSDLIKQYPLAMSFIFISTAFIPWIQDESISRDMIVVLLLPIYFSTVLLLNKRKYANGLAIAYAILITLAFYFAERPIYDNDAYWGLLLIHFVLFVTYPLAKENRLFVYNTVSRLTQLALAIVLAGIICICAVLVLNSIEYLFNINLLSYRIVPKTLLFIMCFFTPVFFLIFEQRLAQNFQGERFHYVIELIVNFIFSPVVILYTLIVYLYLAKILFYFELPKGGVAYIIMPYIALGLCCQGLRLLLIDAKWTGFYRVFAYLSIAPLVLLWVGIHTRITTYGLTEIRVMLVVLASMMTLFILFSMTQRLQQYRLFSLTACLLLFISTILTSPYYLAQQHQLARFERLLSELNILDEQQQISATIFDSQFAKQLSSEQVEKYKQLEEIIGGYIKTNPVAVAKYGQEKLNYLHGFYYNQIIYNTPYQDEEASITFYAYDTRRQDNYTIDIAPYQTLHLINGYVNSGDPNERETQTQETSTLFQRQFDLIDKHNKYSFDEHYFVEVFKAAGLDIHQKYSQDTLLPLAKELTQVPTREGGLLIFRDMDFKYEVHGDIKGYVYQGGYIEFYLAP", "sequence_length": 579, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "01fb7aacf6745a5fbbc5d652124e7df807f0d364b6ca1b4a0cca801350085fd2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CKY2.json", "taxon_id": "272843", "uniprot_accession": "Q9CKY2", "uniprot_release": "2026_03" } ], "pfam_id": "PF13687", "short_name": "DUF4153", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4154-pf13689.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13689", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4154-pf13689.yaml" } ], "pfam_ids": [ "PF13689" ], "protein_name": "Protein YfiR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRFSHRLFLLLILLLTGAPILAQEPSDVAKNVRMMVSGIVSYTRWPALSGPPKLCIFSSSRFSTALQENAATSLPYLPVIIHTQQEAMISGCNGFYFGNESPTFQMELTEQYPSKALLLIAEQNTECIIGSAFCLIIHNNDVRFAVNLDALSRSGVKVNPDVLMLARKKNDG", "sequence_length": 172, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4bc471570801814e550ee99cb28661a8dcead329d9668b9c28f3127bf572e086", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64548.json", "taxon_id": "83333", "uniprot_accession": "P64548", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4154-pf13689.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13689", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4154-pf13689.yaml" } ], "pfam_ids": [ "PF13689" ], "protein_name": "Protein YfiR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRFSHRLFLLLILLLTGAPILAQEPSDVAKNVRMMVSGIVSYTRWPALSGPPKLCIFSSSRFSTALQENAATSLPYLPVIIHTQQEAMISGCNGFYFGNESPTFQMELTEQYPSKALLLIAEQNTECIIGSAFCLIIHNNDVRFAVNLDALSRSGVKVNPDVLMLARKKNDG", "sequence_length": 172, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4bc471570801814e550ee99cb28661a8dcead329d9668b9c28f3127bf572e086", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64549.json", "taxon_id": "83334", "uniprot_accession": "P64549", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4154-pf13689.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13689", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4154-pf13689.yaml" } ], "pfam_ids": [ "PF13689" ], "protein_name": "Negative regulator YfiR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPSLPTLQPLDLYRRTLACLVLAVSCLGGGGLWADDARTSIEQRSNAVSQVLLGIFSYVRWPKEPAVLQLCVVGPTEYADGLLRGMVQANGRRVHAERRAVDNPDLGTLCNVIYLGVVDERERQQVFRSLAGHPVLSISERGTECSVGSMFCLNVGGPRITFEANLDSIARSGVRVHPSVLKLARRQATP", "sequence_length": 190, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dcee8aeefdf219ace1cec831f352c195991f1850846502af2c63f712cb5c662e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9I4L4.json", "taxon_id": "208964", "uniprot_accession": "Q9I4L4", "uniprot_release": "2026_03" } ], "pfam_id": "PF13689", "short_name": "DUF4154", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4156-pf13698.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13698", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4156-pf13698.yaml" } ], "pfam_ids": [ "PF13698" ], "protein_name": "Uncharacterized protein YjeI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHVKYLAGIVGAALLMAGCSSSNELSAAGQSVRIVDEQPGAECQLIGTATGKQSNWLSGQHGEEGGSMRGAANDLRNQAAAMGGNVIYGISSPSQGMLSSFVPTDSQIIGQVYKCPN", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f9563cf5c91bb57a8e2e9cd177eb7ae4340a22ee087ffde9f933911efae4d68", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AF70.json", "taxon_id": "83333", "uniprot_accession": "P0AF70", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4156-pf13698.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13698", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4156-pf13698.yaml" } ], "pfam_ids": [ "PF13698" ], "protein_name": "Uncharacterized protein YjeI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHVKYLAGIVGAALLMAGCSSSNELSAAGQSVRIVDEQPGAECQLIGTATGKQSNWLSGQHGEEGGSMRGAANDLRNQAAAMGGNVIYGISSPSQGMLSSFVPTDSQIIGQVYKCPN", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f9563cf5c91bb57a8e2e9cd177eb7ae4340a22ee087ffde9f933911efae4d68", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AF71.json", "taxon_id": "199310", "uniprot_accession": "P0AF71", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4156-pf13698.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13698", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4156-pf13698.yaml" } ], "pfam_ids": [ "PF13698" ], "protein_name": "Uncharacterized protein YjeI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHVKYLAGIVGAALLMAGCSSSNELSAAGQSVRIVDEQPGAECQLIGTATGKQSNWLSGQHGEEGGSMRGAANDLRNQAAAMGGNVIYGISSPSQGMLSSFVPTDSQIIGQVYKCPN", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f9563cf5c91bb57a8e2e9cd177eb7ae4340a22ee087ffde9f933911efae4d68", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AF72.json", "taxon_id": "623", "uniprot_accession": "P0AF72", "uniprot_release": "2026_03" } ], "pfam_id": "PF13698", "short_name": "DUF4156", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13699", "short_name": "eCIS_core", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dde-tnp-tn3-pf01526.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01526", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dde-tnp-tn3-pf01526.yaml" } ], "pfam_ids": [ "PF01526", "PF13700" ], "protein_name": "Transposase for transposon Tn501", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPRRLILSATERGTLLALPESQDDLIRYYTFNDSDLSLIRQRRGDANRLGFAVQLCLLRYPGYALGTDSELPEPVILWVAKQVQTDPASWTKYGERDVTRREHAQELRTYLQLAPFGLSDFRALVRELTELAQQTDKGLLLAGQALESLRQKRRILPALSVIDRACSEAIARANRRVYRALVEPLTDSHRAKLDELLKLKAGSSITWLTWLRQAPLKPNSRHMLEHIERLKTFQLVDLPEVLGRHIHQNRLLKLAREGGQMTPKDLGKFEPQRRYATLAAVVLESTATVIDELVDLHDRILVKLFSGAKHKHQQQFQKQGKAINDKVRLYSKIGQALLEAKEAGSDPYAAIEAVIPWDEFTESVSEAELLARPEGFDHLHLVGENFATLRRYTPALLEVLELRAAPAAQGVLAAVQTLREMNADNLRKVPADAPTAFIKPRWKPLVITPEGLDRRFYEICALSELKNALRSGDIWVKGSRQFRDFDDYLLPAEKFAALKREQALPLAINPNSDQYLEERLQLLDEQLATVARLAKDNELPDAILTESGLKITPLDAAVPDRAQALIDQTSQLLPRIKITELLMDVDDWTGFSRHFTHLKDGAEAKDRTLLLSAILGDAINLGLTKMAESSPGLTYAKLSWLQAWHIRDETYSAALAELVNHQYQHAFAAHWGDGTTSSSDGQRFRAGGRGESTGHVNPKYGSEPGRLFYTHISDQYAPFSTRVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGETKLYVPQGVQTYPTLRPLIGGTLNIKHVRAHWDDILRLASSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNSLARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERATQGLVEAGKPVDGELLQFLSPLGWEHINLTGDYVWRQSRRLEDGKFRPLRMPGKP", "sequence_length": 988, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1d507bbd52518f95a4d9b6050f88d8a9b2512b281d5343bd344c38714adf186e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P06695.json", "taxon_id": "287", "uniprot_accession": "P06695", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dde-tnp-tn3-pf01526.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01526", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dde-tnp-tn3-pf01526.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4158-pf13700.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13700", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4158-pf13700.yaml" } ], "pfam_ids": [ "PF01526", "PF13700" ], "protein_name": "Transposase for transposon Tn1721", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPRRLILSATERDTLLALPESQDDLIRYYTFNDSDLSLIRQRRGDANRLGFAVQLCLLRYPGYALGTDSELPEPVILWVAKQVQAEPASWAKYGERDVTRREHAQELRTYLQLAPFGLSDLPALVRELTELAQQTDNGLLLAGQALESLRQKRPILPALSVIDRACSEAIARANRRVYRALVEPLTDSHRAKLDELLKLKAGSSITWLTWLRQAPLKPNSRHMLEHIERLKTFQLVDLPEGLGRHIHQNRLLKLAREGGQMTPKDLGKFEPQRRYATLAAVVLESTATVIDELVDLHDRILVKLFSGAKHKHQQQFQKQGKAMNDKVRLYSRIGQALLEAKESGSDPYAAIEAVIPWDEFTESVSEAELLARPEGFDHLHLVGENFATLRRYTPALLEVLEPRAAPAAQGVLAAVQTLREMNADNLRKVPADAPTAFIKPRWKPLVITPEGLDRKFYEICALSELKNALRSGDIWVKGSRQFRDFDDYLLPAEKFAALKREQALPLAINPNSDQYLEERLQLLDEQLATVTRLAKDNELPDAILTESGLKITPLDAAVPDRAQALIDQTSQLLPRIKITELLMDVDDWTGFSRHFTHLKDGAEAKDRTLLLSAILGDAINLGLTKMAESSPGLTYAKLSWLQAWHIRDETYSAALAELVNHQYRHAFAAHWGDGTTSSSDGQRFRAGGRGESTGHVNPKYGSEPGRLFYTHISDQYAPFSTRVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGETKLYVPQGVQAYPTLRPLIGGTLNIKHVRAHWDDILRLASSIKQGTVTASLMLRKFGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNSLARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERATQGLVEAGKPVDGELLQFLSPLGWEHINLTGDYVWRQSRRLEDGKFRPLRMPGKP", "sequence_length": 988, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f74bbd0f867236f22c19f3f3c9133274d46d46d24e1532e2e937dea456a9f1f9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P51565.json", "taxon_id": "562", "uniprot_accession": "P51565", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/tn3-family-transposase-nf033527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF033527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/tn3-family-transposase-nf033527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4158-ipr025296.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025296", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4158-ipr025296.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tn3-transposase-dde-domain-ipr002513.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR002513", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tn3-transposase-dde-domain-ipr002513.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dde-tnp-tn3-pf01526.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01526", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dde-tnp-tn3-pf01526.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4158-pf13700.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13700", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4158-pf13700.yaml" } ], "pfam_ids": [ "PF01526", "PF13700" ], "protein_name": "Transposase for transposon gamma-delta", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPVDFLTSDQKQNYGCYAAEPNDVQLARYFHLDERDLAFINQRRGKHNRLGIALQLTTARFLGTFLTDLTQVLPGVQHFVAVQLNIHRPEVLSRYAERDTTLREHTALIKEYYGYHEFGDFPWSFRLKRLLYTRAWLSNERPGLMFDFATAWLLQNKVLLPGATTLVRLISEIRERANQRLWKKLAALPNKWQAAQVMELLVIPEGQRVSALEQLKKGPVTVSGPAFNEALERYIRLRSLEFSRLNFSGLPAIQLRNLARYAGMASVKYIARMPQQRKLAVLTAFVKAQEITALDDAVDVLDMLILDIIREAKKTGQKKRLRTLKDLDQAALLLARACALLLDDNTDVPDLRQVIFKCVPKNRLAESVSKVNELARPQNNNFHDEMVEQYGRVKRFLPAVLRDLHFRAAPAGEHVLAAIHYLAELNGSKKRILDDAPEHIITGPWKRLVYDAEGRIQRAGYSLCLLERLQDALRRRDIWLENSDRWGDPREKLLQGEEWQTQRIPVCRALGHPVDGRKGVQQLAIQLDETWKAVASRFEKNAEVHICNEGKYPSLTISCLEKQEEPPSLLRLNNRIKQLLPPVDLTELLLEIDAQTGFTHEFAHVSESGARAQDLHISLCAVLMAEACNIGLEPLIKHNIPALTRHRLSWVKQNYLRAETLVSANARLVDFQSTLELAGRWGGGEVASADGMRFVTPVKTINSGSNRKYFGSGRGITWYNFVSDQYSGFHGIVVPGTLRDSIFVLEGLLEQQTGLNPVEIMTDTAGSSDIIFGLFWLLGYQFSPRLADAGEAVFWRVNKSANYGVLDKLARGYADLSKAESQWDEMMRTAGSLKLGTIHASELIRSLLKSSRPSGLAQAIMEVGRVNKTLYLLNYIDDEDYRRRILTQLNRGEGRHAVARAICYGQRGEIRKRYREGQEDQLGALGLVTNAVVLWNTLYMEEALSWMRRNGEEIIDEDIARLSPLMHGHINMLGHYTFTLPEDILKGELRALNLNINNELSP", "sequence_length": 1002, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1f5eff66baf4d45d58ccb5bdf86d915d85f0078dd0dd0fb42a5687cdac2fec74", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q00037.json", "taxon_id": "83333", "uniprot_accession": "Q00037", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterococcus faecium", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4158-pf13700.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13700", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4158-pf13700.yaml" } ], "pfam_ids": [ "PF01526", "PF13700" ], "protein_name": "Transposase for transposon Tn1546", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIARGRELLTPEQRQAFMQIPEDEWILGTYFTFSKRDLEIVNKRRREENRLGFAVQLAVLRYPGWPYTHIKSIPDSVIQYISKQIGVSPSSLDHYPQRENTLWDHLKEIRSEYDFVTFTLSEYRMTFKYLHQLALENGDAIHLLHECIDFLRKNKIILPAITTLERMVWEARAMAEKKLFNTVSKSLTNEQKEKLEGIITSQHPSESNKTILGWLKEPPGHPSPETFLKIIERLEYIRGMDLETVQISHLHRNRLLQLSRLGSRYEPYAFRDFQENKRYSILTIYLLQLTQELTDKAFEIHDRQILSLLSKGRKAQEEIQKQNGKKLNEKVIHFTNIGQALIKAREEKLDVFKVLESVIEWNTFVSSVEEAQELARPADYDYLDLLQKRFYSLRKYTPTLLRVLEFHSTKANEPLLQAVEIIRGMNESGKRKVPDDSPVDFISKRWKRHLYEDDGTTINRHYYEMAVLTELREHVRAGDVSIVGSRQYRDFEEYLFSEDTWNQSKGNTRLSVSLSFEDYITERTSSFNERLKWLAANSNKLDGVSLEKGKLSLARLEKDVPEEAKKFSASLYQMLPRIKLTDLLMDVAHITGFHEQFTHASNNRKPDKEETIIIMAALLGMGMNIGLSKMAEATPGLTYKQLANVSQWRMYEDAMNKAQAILVNFHHKLQLPFYWGDGTTSSSDGMRMQLGVSSLHADANPHYGTGKGATIYRFTSDQFSSYYTKIIHTNSRDAIHVLDGLLHHETDLNIEEHYTDTAGYTDQIFGLTHLLGFKFAPRIRDLSDSKLFTIDKASEYPKLEAILRGQINTKVIKENYEDVLRLAHSIREGTVSASLIMGKLGSYSRQNSLATALREMGRIEKTIFILNYISDESLRRKIQRGLNKGEAMNGLARAIFFGKQGELRERTIQHQLQRASALNIIINAISIWNTLHLTTAVEYKKRTGSFNEDLLHHMSPLGWEHINLLGEYHFNSEKVVSLNSLRPLKLS", "sequence_length": 988, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b8ab6de58cb9f4a66e35208321a83e272f886b57dcca8e2009afefbbec7e5412", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06238.json", "taxon_id": "1352", "uniprot_accession": "Q06238", "uniprot_release": "2026_03" } ], "pfam_id": "PF13700", "short_name": "DUF4158", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13708", "short_name": "DUF4942", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13709", "short_name": "DUF4159", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13711", "short_name": "DUF4160", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/carbopepd-reg-2-pf13715.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/carbopepd-reg-2-pf13715.yaml" } ], "pfam_ids": [ "PF00082", "PF05922", "PF09136", "PF13620", "PF13715" ], "protein_name": "Bacillopeptidase F", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKKTKNRLISSVLSTVVISSLLFPGAAGASSKVTSPSVKKELQSAESIQNKISSSLKKSFKKKEKTTFLIKFKDLANPEKAAKAAVKKAKSKKLSAAKTEYQKRSAVVSSLKVTADESQQDVLKYLNTQKDKGNADQIHSYYVVNGIAVHASKEVMEKVVQFPEVEKVLPNEKRQLFKSSSPFNMKKAQKAIKATDGVEWNVDQIDAPKAWALGYDGTGTVVASIDTGVEWNHPALKEKYRGYNPENPNEPENEMNWYDAVAGEASPYDDLAHGTHVTGTMVGSEPDGTNQIGVAPGAKWIAVKAFSEDGGTDADILEAGEWVLAPKDAEGNPHPEMAPDVVNNSWGGGSGLDEWYRDMVNAWRAADIFPEFSAGNTDLFIPGGPGSIANPANYPESFATGATDINKKLADFSLQGPSPYDEIKPEISAPGVNIRSSVPGQTYEDGWDGTSMAGPHVSAVAALLKQANASLSVDEMEDILTSTAEPLTDSTFPDSPNNGYGHGLVNAFDAVSAVTDGLGKAEGQVSVEGDDQEPPVYQHEKVTEAYEGGSLPLTLTAEDNVSVTSVKLSYKLDQGEWTEITAKRISGDHLKGTYQAEIPDIKGTKLSYKWMIHDFGGHVVSSDVYDVTVKPSITAGYKQDFETAPGGWVASGTNNNWEWGVPSTGPNTAASGEKVYGTNLTGNYANSANMNLVMPPIKAPDSGSLFLQFKSWHNLEDDFDYGYVFVLPEGEKNWEQAGVYNGKTSSWTDEEIDLSAYKGQNIQVMFNLQSDESIAKEGWYIDDVVLSDKSAGKTVKKNKLGVEKPSGKQKKKPVNPKKAKPSANTAVKHQNKAIQPQVLPLKAQVSVVETGKSTYSDQSTGQYTLKHKAGDYTLMAEAYGYQSKTQKVSLKTDQTTQANFTLEEMKKGTLKGTVINKTTGEPVTGASVYVVEDAAVEPAMTNDKGEYMLEAYEGAYTIKVAAPGYYSDEFSVELKGDVTKETALKPFVGYPGEIAYDDGTAENANSYFAAGNGWAVKMTLADGKDKGMLTGGLFRFWDTEFPDPGGTEFKVEVYDATGKDGAPGKKIAGPFNAEALRNGEWTKVDLSSKGIMVDKDFYLVYIQSKPDPYSPGLAMDETGQNSGRNWQYIDGKWQPGDKADGNYMIRALVDYEAAVPEITSPTDKSYTNKDSVTVKGNASPGTTVHIYNGEKEAGETKAAADGTFHAGIILNKGENELTATASTDNGTTDASSPITVTLDQEKPELTLDNPKDGGKTNKETLTVKGAVSDDNLKDVKVNGKKATVADGSYSARILLENGRNEIKVIATDLAGNKTTKKTVIDVNFDKPVISGLIPGEDKNLKAGESVKIAFSSAEDLDATFTIRMPLTNARASVQNATELPLREISPGRYEGYWTATSSIKAKGAKVEVIVRDDYGNETRKTANGKLNMNTEN", "sequence_length": 1433, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d0db66243160ea9470900364ea2d191ce4a3782a2d292e0b812246455149927c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P16397.json", "taxon_id": "224308", "uniprot_accession": "P16397", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/carbopepd-reg-2-pf13715.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/carbopepd-reg-2-pf13715.yaml" } ], "pfam_ids": [ "PF00593", "PF07715", "PF13715" ], "protein_name": "TonB-dependent receptor SusC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKGNFMFKVLLMLIAGIFLSIDAFAQQITVKGIVKDTTGEPVIGANVVVKGTTTGTITDFDGNFQLSAKQGDIIVVSFIGYQPQELPVAAQMNVILKDDTEILDEVVVIGYGQVKKNDMTGSVMAIKPDELSKGITTNAQDMLSGKIAGVSVISNDGTPGGGAQIRIRGGSSLNASNDPLIVIDGLAIDNEGIKGMANGLSMVNPADIETLTVLKDASATAIYGSRASNGVIIITTKKGKNGQAPSVSYNGSVSFSKTQKRYDVLSGDEYRAYANQLWGDKLPADLGTANTDWQDQIFRTAVSTDHHVSINGGFKNLPYRVSLGYTDDNGIVKTSNFRRFTASVNLAPSFFEDHLKFNINAKFMNGKNRYADTGAAIGGALAIDPTRPVYSNEDPYQFTGGYWQNINSTTGFSNPDWKYTSNPNSPQNPLAALELKNDKANSNDFVGNVDVDYKFHFLPDLRLHASIGGEYAEGTQTTIVSPYSFGNNYYGWNGDVTQYKYNLSYNIYVQYIKSLGANDFDIMVGGEEQHFHRNGFEEGQGWDSYTQEPHDAKLREQTAYATRNTLVSYFGRLNYSLLNRYLFTFTMRWDGSSRFSKDNRWGTFPSLALGWKIKEENFLKDVNVLSDLKLRLGWGITGQQNIGDDFAYLPLYVVNNEYAQYPFGDTYYSTSRPKAFNENLKWEKTTTWNAGLDFGFLNGRITGGIDGYFRKTDDLLNSVKIPVGTNFNAQMTQNIGSLENYGMEFSINAKPIVTKDFTWDLSYNITWNHNEITKLTGGDDSDYYVEAGDKISRGNNTKVQAHKVGYAANSFYVYQQVYDENGKPIENMFVDRNGNGTIDSGDKYIYKKPAGDVLMGLTSKMQYKNFDFSFSLRASLNNYVYYDFLSNKANVSTSGLFSNNAYSNTSAEAVALGLSGQGDYMSDYFIHNASFLRCDNITLGYSFQNLWKTQTYKGVGGRVYATVQNPFIISKYKGLDPEVKSGIDANPYPRAMTFLLGLSLQF", "sequence_length": 1003, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "377997b41f5cbbe420f5755df299f07ea1dbd633f18b1907b41f0e5701822010", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8A1G1.json", "taxon_id": "226186", "uniprot_accession": "Q8A1G1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/carbopepd-reg-2-pf13715.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/carbopepd-reg-2-pf13715.yaml" } ], "pfam_ids": [ "PF00593", "PF07715", "PF13715" ], "protein_name": "TonB-dependent receptor SusC(lev)", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGIMKNKKLLCSVCFLFAFMSALWGQNITVKGNVTSKTDGQPIIGASVVETTATTNGTITDFDGNFTLSVPVNSTLKITYIGYKPVTVKAAAIVNVLLEEDTQMVDEVVVTGYTTQRKADLTGAVSVVKVDEIQKQGENNPVKALQGRVPGMNITADGNPSGSATVRIRGIGTLNNNDPLYIIDGVPTKAGMHELNGNDIESIQVLKDAASASIYGSRAANGVIIITTKQGKKGQIKINFDASVSASMYQSKMNVLNTEQYGRAMWQAYVNDGENPNGNALGYAYNWGYNADGNPVLYGMTLSKYLDSKNTMPVADTDWFDEITRTGVIQQYNLSVSNGSEKGSSFFSLGYYKNLGVIKDTDFDRFSARMNSDYKLIDDILTIGQHFTLNRTSEVQAPGGIIETALDIPSAIPVYASDGSWGGPVGGWPDRRNPRAVLEYNKDNRYTYWRMFGDAYVNLTPFKGFNLRSTFGLDYANKQARYFTYPYQEGTQTNNGKSAVEAKQEHWTKWMWNAIATYQLEVGKHRGDVMIGMELNREDDSHFSGYKEDFSILTPDYMWPDAGSGTAQAYGAGEGYSLVSFFGKMNYSYADRYLLSLTLRRDGSSRFGKNHRYATFPSVSLGWRITQENFMKELTWLDDLKLRASWGQTGNQEISNLARYTIYAPNYGTTDSFGGQSYGTAYDITGSNGGGVLPSGFKRNQIGNDNIKWETTTQTNVGIDFSLFKQSLYGSLEYYYKKATDILTEMAGVGVLGEGGSRWINSGAMKNQGFEFNLGYRNKTAFGLTYDLNGNISTYRNEILELPETVAANGKFGGNGVKSVVGHTYGAQVGYIADGIFKSQDEVDNHATQEGAAVGRIRYRDIDHNGVIDERDQNWIYDPTPSFSYGLNIYLEYKNFDLTMFWQGVQGVDIISDVKKKSDFWSASNVGFLNKGTRLLNAWSPTNPNSDIPALTRSDTNNEQRVSTYFVENGSFLKLRNIQLGYTVPAVISKKMRMDRLRFYCSAQNLLTIKSKNFTGEDPENPNFSYPIPVNITFGLNIGF", "sequence_length": 1041, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "288eb98a339f669406151e62d88aaaed31037024575a0d7bceae8624ba9e347f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8A6W3.json", "taxon_id": "226186", "uniprot_accession": "Q8A6W3", "uniprot_release": "2026_03" } ], "pfam_id": "PF13715", "short_name": "CarbopepD_reg_2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/daunorubicin-resistance-atp-binding-protein-drra1-2-like-c-terminal-do-ipr025302.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/daunorubicin-resistance-atp-binding-protein-drra1-2-like-c-terminal-do-ipr025302.yaml" } ], "pfam_ids": [ "PF00005", "PF13732" ], "protein_name": "Uncharacterized ABC transporter ATP-binding protein YhaQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLTIDHVTKTFGDYKAVDGLDLDIPEQQMFGLLGANGAGKTTTFRMILGLLSITEGSISWKGRPVNYHISNKIGYLPEERGLYPKMKVRDQLVYLARLKGMEKREAVKELGTWLERFNITDYENKKVEELSKGNQQKIQFISAVLHKPELLILDEPFSGLDPVNVELLKEAVISLKNSGVSILFSSHRMEHVEELCENLCILQKGKPVVQGKLKEIKRSFGKKNVTIHSDDDLRFLQSHEGILQWKETADGVKLQIANEDISQEIFAMLQGKGFIRKFELEEPSLHDIFIEKVGAVYE", "sequence_length": 298, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d974b2477ebd436d54b8e3b6df36229b4b06eaf1439b2550242187a51cc395a2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0SPB4.json", "taxon_id": "224308", "uniprot_accession": "C0SPB4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/drra1-3-c-pf13732.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13732", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/drra1-3-c-pf13732.yaml" } ], "pfam_ids": [ "PF00005", "PF13732" ], "protein_name": "Multidrug efflux system ATP-binding protein Rv1218c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSADNHQVPIEIRGLTKHFGSVRALDGLDLTVREGEVHGFLGPNGAGKSTTLRILLGLVKADGGSVRLLGGDPWTDAVDLHRHIAYVPGDVTLWPSLTGGETIDLLARMRGGIDNARRAELIERFGLDPTKKARTYSKGNRQKVSLISALSSHATLLLLDEPSSGLDPLMENVFQQCIGEARQRGVTVLLSSHILAETEALCEKVTIIRAGKTVESGSLDALRHLSRTSIKAEMIGDPGDLSQIKGVEDISIEGTTVRAQVDSESLRELIQVLGHAGVRSLVSQPPTLEELFLRHYSLGPEVAAEQQVATP", "sequence_length": 311, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "16d77a8b6f543aa0f1e6f7d7f6ee8372af5287bd0b28d1d2be71a2b012a8bcf4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O86311.json", "taxon_id": "83332", "uniprot_accession": "O86311", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces coeruleorubidus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/drra1-3-c-pf13732.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13732", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/drra1-3-c-pf13732.yaml" } ], "pfam_ids": [ "PF00005", "PF13732" ], "protein_name": "Daunorubicin resistance ATP-binding protein DrrA2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDGYAVRAEAMEKRYGEKRALDGFDLAVGEGTVHGLLGPNGAGKTTAVRILSTLVRLDGGRATVAGLDVARQPREVRARIGLTGQYAAVDEVLTGRQNLEMFGRLFHLGGRRARLRATELLEQFDLTDAGDRGVGKYSGGMRRRLDLAASMILAPAVLFLDEPTTGLDPRSRGEVWESVRALVAGGTTVLLTTQYLEEADKLASRITVIDQGRAIADDTPDGLKNLVGGDRIEVVVAERAEIPRVVKVVARVADGEPEADETESRVHAPVTDRVTALTEVARTLQDEGVRVEDIGLRRPSLDDVFLRLTGHRTENTEAKEAA", "sequence_length": 322, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2ca962384eab52f63840ebe294f20a563ed32fb8966a77e2f1c8c7c091f6e9f3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DXU5.json", "taxon_id": "116188", "uniprot_accession": "P0DXU5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces peucetius", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/drra1-3-c-pf13732.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13732", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/drra1-3-c-pf13732.yaml" } ], "pfam_ids": [ "PF00005", "PF13732" ], "protein_name": "Daunorubicin/doxorubicin resistance ATP-binding protein DrrA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTQPTRAIETSGLVKVYNGTRAVDGLDLNVPAGLVYGILGPNGAGKSTTIRMLATLLRPDGGTARVFGHDVTSEPDTVRRRISVTGQYASVDEGLTGTENLVMMGRLQGYSWARARERAAELIDGFGLGDARDRLLKTYSGGMRRRLDIAASIVVTPDLLFLDEPTTGLDPRSRNQVWDIVRALVDAGTTVLLTTQYLDEADQLADRIAVIDHGRVIAEGTTGELKSSLGSNVLRLRLHDAQSRAEAERLLSAELGVTIHRDSDPTALSARIDDPRQGMRALAELSRTHLEVRSFSLGQSSLDEVFLALTGHPADDRSTEEAAEEEKVA", "sequence_length": 330, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9492efae41b23fe1e44f644d5191e890963af33c7664df11e01da5abf268b634", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32010.json", "taxon_id": "1950", "uniprot_accession": "P32010", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/daunorubicin-resistance-atp-binding-protein-drra1-2-like-c-terminal-do-ipr025302.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/daunorubicin-resistance-atp-binding-protein-drra1-2-like-c-terminal-do-ipr025302.yaml" } ], "pfam_ids": [ "PF00005", "PF13732" ], "protein_name": "Uncharacterized ABC transporter ATP-binding protein YxlF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSIESLCKSYRHHEAVKNVSFHVNENECVALLGPNGAGKTTTLQMLAGLLSPTSGTIKLLGEKKLDRRLIGYLPQYPAFYSWMTANEFLTFAGRLSGLSKRKCQEKIGEMLEFVGLHEAAHKRIGGYSGGMKQRLGLAQALLHKPKFLILDEPVSALDPTGRFEVLDMMRELKKHMAVLFSTHVLHDAEQVCDQVVIMKNGEISWKGELQELKQQQQTNVFTLSVKEKLEGWLEEKPYVSAIVYKNPSQAVFELPDIHAGRSLLSDCIRKGLTVTRFEQKTESLEDVYLKVVHA", "sequence_length": 295, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "901984c4d75da1cad1ca5c23234af27be68a7514434551d96e7bfdcc8c3be10c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P94374.json", "taxon_id": "224308", "uniprot_accession": "P94374", "uniprot_release": "2026_03" } ], "pfam_id": "PF13732", "short_name": "DrrA1-3_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/deacetylase-pdac-ipr025303.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025303", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/deacetylase-pdac-ipr025303.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3298-ipr021729.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021729", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf3298-ipr021729.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3298-pf11738.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3298-pf11738.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pdac-pf13739.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13739", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pdac-pf13739.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/pdac-rsiv-like-superfamily-ipr037126.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR037126", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/pdac-rsiv-like-superfamily-ipr037126.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/fervidobacterium-nodosum-rt17-b1-like-3-30-565-40.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.565.40", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/fervidobacterium-nodosum-rt17-b1-like-3-30-565-40.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/heat-shock-cognate-protein-atpase-3-90-640-20.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.90.640.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/heat-shock-cognate-protein-atpase-3-90-640-20.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O05403", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11738", "PF13739" ], "protein_name": "Anti-sigma-V factor RsiV", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "2c787b61d116a4ecd8ec7c06facafff1637c6dedccfed48b70312c69b04b645d", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_02", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDKRLQQLREEYKNVQIPKELDIIVEKALQQEPKKKRIVMWPTSAAIAAAILFTALVNINPDAAQAMSKIPVIGKIVKAITFIEIKEEKDQSSIDVKTPALSGLSNKELENSINEKYLKESQQLYKEFIQSTSKNKKGHLSIYSDYETVTDTPDLLSIRRNIETTQASSYTQSRYITIDKKNDILLTLKSLFKDERYIKVISQNIKEQMKQQMKEDPNKIYWLTDEDAEPFKTILPDQTFYITEDHKLVISFDEYEVAPGYMGVTEFTIPTGVISNLLVGERYIR", "sequence_length": 285, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2c787b61d116a4ecd8ec7c06facafff1637c6dedccfed48b70312c69b04b645d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O05403.json", "taxon_id": "224308", "uniprot_accession": "O05403", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3298-pf11738.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3298-pf11738.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pdac-pf13739.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13739", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pdac-pf13739.yaml" } ], "pfam_ids": [ "PF01522", "PF11738", "PF13739" ], "protein_name": "Peptidoglycan-N-acetylmuramic acid deacetylase PdaC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLAKRIKWFHVLIAVVCVVGLIGFFHNHSLKKETVMNKVRTDSQYGNVEIATLVNDGKTFNYAVNYPVFKNEKMDSALKRFAEKEVRQFQKETKDVDQEHTTKRNELNVDYKIVHYAKQTVAIVFNEYKYIGGAHGQTVKKTFNYDFSKQAFLSIDDIFKEDADYLHKLSLIAYHELKKNKDIAADDALLKEGTAPKKENFSRFAIKEDYIELYFDTYQVAAGYLGEQSIAIKKSLLKDILKEQYIDKAKNKNKIKEQKPKHEVISLPKEETVDPNQKVIALTFDDGPNPATTNQILDSLKKYKGHATFFVLGSRVQYYPETLIRMLKEGNEVGNHSWSHPLLTRLSVKEALKQINDTQDIIEKISGYRPTLVRPPYGGINDELRSQMKMDVALWDVDPEDWKDRNKKTIVDRVMNQAGDGRTILIHDIYRTSADAADEIIKKLTDQGYQLVTVSQLEEVKKQREAK", "sequence_length": 467, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bd5e5b0f4b44f5703de864936e8c860e4722ff7d35eb2566abf3a0d5ca9b4084", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34798.json", "taxon_id": "224308", "uniprot_accession": "O34798", "uniprot_release": "2026_03" } ], "pfam_id": "PF13739", "short_name": "PdaC", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13747", "short_name": "DUF4164", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13752", "short_name": "DUF4165", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4166-ipr025311.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025311", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4166-ipr025311.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4166-pf13761.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13761", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4166-pf13761.yaml" } ], "pfam_ids": [ "PF13761" ], "protein_name": "Uncharacterized protein YndH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSIYEKSIINYHLLHPKLQKRYQLDGSHTFSGTGTMSEISGGSFLVRMLLKLGVFFRCFFSERGKDIPFTIQNRTCLLKSQHTGIEWNRTFFFKGKKRFFDALMIYDEKENRILDFFGKPHLLLSVLTFEASLDGSLTITSGKQWLLICGKRIPLPKWLTGTSEVCETFDEKKNCFTIEVHVQNTILGTLFFYKGTFQEEERES", "sequence_length": 205, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0b3d08db8f08215b57a0c0e223871711ef4a821f51233aea466ea395fb7a6014", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31812.json", "taxon_id": "224308", "uniprot_accession": "O31812", "uniprot_release": "2026_03" } ], "pfam_id": "PF13761", "short_name": "DUF4166", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13763", "short_name": "DUF4167", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13767", "short_name": "DUF4168", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13770", "short_name": "DUF4169", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13773", "short_name": "DUF4170", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Xenopus tropicalis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4171-pf13775.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13775", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4171-pf13775.yaml" } ], "pfam_ids": [ "PF00505", "PF13775" ], "protein_name": "HMG box-containing protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFRDLRECIDSERGMEDVGLAAGRSQREKKRSYKDLLREEEEIAEQVRKSSKKRSRELDLFLASESHKKKKKHLTDDYHADTPSPDLAKKKKKALLPSPAPPSSSDTAMDLLKAITSPQVDTSTTHLPKKPEKILATPVNFSSPSQSSHKEHHKKIGEVSGDDSSHRSKKSKPLTLREPDGLRMKLILSPNEKSEEESASPQGGPGHSEGASSKKTSKKTGREETESRSSHKKHKKESHTPRSGGTPDSASSTGGELEAGELIIDDSFHEMKKKKKSKKSKKKKDKHKDEKHRKHSKSKREHEGEERPTQIASPVLPSPPPPTATTPTSPPSVPPQALITHAEEQLDKKKKKEDPEKPKKKNMSAYQVFSKEYRGSIIAEHPGIDFGELSKKLAEVWKQLPEKDKLAWKQKAQYLQHKQNKAEATTVKRKSSSSESAARSKGSSSGLPSPNKKSPTSVVSFSTSPAKVPDTEPIDVAAHLQLLGESLSLIGHRLQETEGMVAVSGSLSVLLDSILCALGPLVCLTSHVPQLNACPKQILSNTLDNIAYVMPGL", "sequence_length": 554, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3dca14703a10dd657cfc223e185d2a8389c52ed6fd9dea9c42c3941fe3afb16d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5BL56.json", "taxon_id": "8364", "uniprot_accession": "Q5BL56", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Xenopus laevis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4171-pf13775.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13775", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4171-pf13775.yaml" } ], "pfam_ids": [ "PF00505", "PF13775" ], "protein_name": "HMG box-containing protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSYRDLRECIDLERGTEDVGLAAGRSQREKKRSYKDLLREEEEIAEQVRKSSKKRSKELDLFSGNELHKKKKKHSSDDYHADHSTDSAKKKKKTSLPSPSSSDTAMDLLKAITSPQADTSTTHPSKKPEKILATPISFSSPSQPPHKDYHKKSGEVSGDDSSHRSKKSKPLTLREPDGLRMKLIMSPNEKSEEEAVSPQGGPGHSDSASSKKNSKKLGREEIESRSSHKKHKKQSYTPRSGGTPDSASSTGGELDAGELVIDDSLRDMKKKKKSKKSKKKKDKHKDEKHKKHSKSKREHEVEQSQTQIASPGLPSPPPPPATTPPTSPPSIPLQPQALVTHTEEQSDKKKKKEDPEKPKKKNMSAYQVFSKEYRVSIIAEHPGIDFGELSKKLAEVWKQLPEKDKLVWKQKAQYLQHKQNKAEATTVKRKSSSSESAPKSKGSSSGLVSPNKKSPTSSVASFSTSPAKVPDTEPIDVAAHLQLLGESLSLIGHRLQETEGMVAVSGSLSVLLDSILCALGPLVCLTSHVPQLNACPKQILSNTLDNIAYVMPGL", "sequence_length": 554, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4b76e99cc07d203f4ef5bd93ce760dedfa15316b54c881afd21e58f12ab46e30", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6WKW9.json", "taxon_id": "8355", "uniprot_accession": "Q6WKW9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/high-mobility-group-hmg-box-found-in-hmg-domain-containing-protein-4-h-cd21982.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd21982", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/high-mobility-group-hmg-box-found-in-hmg-domain-containing-protein-4-h-cd21982.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4171-ipr025228.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4171-ipr025228.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hmg-domain-containing-protein-4-hmg-box-ipr048016.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048016", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hmg-domain-containing-protein-4-hmg-box-ipr048016.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4171-pf13775.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13775", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4171-pf13775.yaml" } ], "pfam_ids": [ "PF00505", "PF13775" ], "protein_name": "HMG domain-containing protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREKKRSYKDFLREEEEIAAQVRNSSKKKLKDSELYFLGTDTHKKKRKHSSDDYYYGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTTMLLPASPAKAPETEPIDVAAHLQLLGESLSLIGHRLQETEGMVAVSGSLSVLLDSIICALGPLACLTTQLPELNGCPKQVLSNTLDNIAYIMPGL", "sequence_length": 601, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e9bdf606676f60814788ef330017a385f1b992bc619073e23ab1b658705ecde7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UGU5.json", "taxon_id": "9606", "uniprot_accession": "Q9UGU5", "uniprot_release": "2026_03" } ], "pfam_id": "PF13775", "short_name": "DUF4171", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13776", "short_name": "DUF4172", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/hepatocyte-growth-factor-binding-go0036458.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0036458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/hepatocyte-growth-factor-binding-go0036458.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4174-ipr025232.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4174-ipr025232.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hyr-domain-ipr003410.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003410", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hyr-domain-ipr003410.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hyr-pf02494.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02494", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hyr-pf02494.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4174-pf13778.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13778", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4174-pf13778.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/hyr.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/hyr.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O60687", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00084", "PF02494", "PF13778" ], "protein_name": "Sushi repeat-containing protein SRPX2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e5c0a4831bca51db114b1710b407b81b389c033e01bf30523dd81ffa86db57b6", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MASQLTQRGALFLLFFLTPAVTPTWYAGSGYYPDESYNEVYAEEVPQAPALDYRVPRWCYTLNIQDGEATCYSPKGGNYHSSLGTRCELSCDRGFRLIGRRSVQCLPSRRWSGTAYCRQMRCHALPFITSGTYTCTNGVLLDSRCDYSCSSGYHLEGDRSRICMEDGRWSGGEPVCVDIDPPKIRCPHSREKMAEPEKLTARVYWDPPLVKDSADGTITRVTLRGPEPGSHFPEGEHVIRYTAYDRAYNRASCKFIVKVQVRRCPTLKPPQHGYLTCTSAGDNYGATCEYHCDGGYDRQGTPSRVCQSSRQWSGSPPICAPMKINVNVNSAAGLLDQFYEKQRLLIISAPDPSNRYYKMQISMLQQSTCGLDLRHVTIIELVGQPPQEVGRIREQQLSANIIEELRQFQRLTRSYFNMVLIDKQGIDRDRYMEPVTPEEIFTFIDDYLLSNQELTQRREQRDICE", "sequence_length": 465, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e5c0a4831bca51db114b1710b407b81b389c033e01bf30523dd81ffa86db57b6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O60687.json", "taxon_id": "9606", "uniprot_accession": "O60687", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/phagolysosome-assembly-go0001845.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0001845", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/phagolysosome-assembly-go0001845.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4174-ipr025232.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4174-ipr025232.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hyr-domain-ipr003410.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003410", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hyr-domain-ipr003410.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hyr-pf02494.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02494", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hyr-pf02494.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4174-pf13778.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13778", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4174-pf13778.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/hyr.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/hyr.yaml" } ], "pfam_ids": [ "PF00084", "PF02494", "PF13778" ], "protein_name": "Sushi repeat-containing protein SRPX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSPAHRPALLLLLPPLLLLLLLRVPPSRSFPGSGDSPLEDDEVGYSHPRYKDTPWCSPIKVKYGDVYCRAPQGGYYKTALGTRCDIRCQKGYELHGSSLLICQSNKRWSDKVICKQKRCPTLAMPANGGFKCVDGAYFNSRCEYYCSPGYTLKGERTVTCMDNKAWSGRPASCVDMEPPRIKCPSVKERIAEPNKLTVRVSWETPEGRDTADGILTDVILKGLPPGSNFPEGDHKIQYTVYDRAENKGTCKFRVKVRVKRCGKLNAPENGYMKCSSDGDNYGATCEFSCIGGYELQGSPARVCQSNLAWSGTEPTCAAMNVNVGVRTAAALLDQFYEKRRLLIVSTPTARNLLYRLQLGMLQQAQCGLDLRHITVVELVGVFPTLIGRIGAKIMPPALALQLRLLLRIPLYSFSMVLVDKHGMDKERYVSLVMPVALFNLIDTFPLRKEEMVLQAEMSQTCNT", "sequence_length": 464, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b0b8636a74fb96a71864d1b44d9b1c9d626d712efd15d7a3baa82cc51554c133", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P78539.json", "taxon_id": "9606", "uniprot_accession": "P78539", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4174-ipr025232.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4174-ipr025232.yaml" } ], "pfam_ids": [ "PF13778" ], "protein_name": "Coiled-coil domain-containing protein 80", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTWRMGPRFTMLLAMWLVCGSEPHPHATIRGSHGGRKVPLVSPDSSRPARFLRHTGRSRGIERSTLEEPNLQPLQRRRSVPVLRLARPTEPPARSDINGAAVRPEQRPAARGSPREMIRDEGSSARSRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQAGEEGGKVRRITSEGQILEQPLDPSLIPKLMSFLKLEKGKFGMVLLKKTLQVEERYPYPVRLEAMYEVIDQGPIRRIEKIRQKGFVQKCKASGVEGQVVAEGNDGGGGAGRPSLGSEKKKEDPRRAQVPPTRESRVKVLRKLAATAPALPQPPSTPRATTLPPAPATTVTRSTSRAVTVAARPMTTTAFPTTQRPWTPSPSHRPPTTTEVITARRPSVSENLYPPSRKDQHRERPQTTRRPSKATSLESFTNAPPTTISEPSTRAAGPGRFRDNRMDRREHGHRDPNVVPGPPKPAKEKPPKKKAQDKILSNEYEEKYDLSRPTASQLEDELQVGNVPLKKAKESKKHEKLEKPEKEKKKKMKNENADKLLKSEKQMKKSEKKSKQEKEKSKKKKGGKTEQDGYQKPTNKHFTQSPKKSVADLLGSFEGKRRLLLITAPKAENNMYVQQRDEYLESFCKMATRKISVITIFGPVNNSTMKIDHFQLDNEKPMRVVDDEDLVDQRLISELRKEYGMTYNDFFMVLTDVDLRVKQYYEVPITMKSVFDLIDTFQSRIKDMEKQKKEGIVCKEDKKQSLENFLSRFRWRRRLLVISAPNDEDWAYSQQLSALSGQACNFGLRHITILKLLGVGEEVGGVLELFPINGSSVVEREDVPAHLVKDIRNYFQVSPEYFSMLLVGKDGNVKSWYPSPMWSMVIVYDLIDSMQLRRQEMAIQQSLGMRCPEDEYAGYGYHSYHQGYQDGYQDDYRHHESYHHGYPY", "sequence_length": 950, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cde757f82568c83ba061fa9371fa76b3d173a1cb72cfd34db10836e5ad87d6a1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q76M96.json", "taxon_id": "9606", "uniprot_accession": "Q76M96", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/hepatocyte-growth-factor-binding-go0036458.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0036458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/hepatocyte-growth-factor-binding-go0036458.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4174-ipr025232.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4174-ipr025232.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hyr-domain-ipr003410.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003410", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hyr-domain-ipr003410.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4174-pf13778.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13778", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4174-pf13778.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/hyr.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/hyr.yaml" } ], "pfam_ids": [ "PF00084", "PF02494", "PF13778" ], "protein_name": "Sushi repeat-containing protein SRPX2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMTSPLTQRGALSLLLLLMPAVTPTWYAGSGYSPDESYNEVYAEEVPAARARALDYRVPRWCYTLNIQDGEATCYSPRGGNYHSSLGTRCELSCDRGFRLIGRKSVQCLPSRRWSGTAYCRQIRCHTLPFITSGTYTCTNGMLLDSRCDYSCSSGYHLEGDRSRICMEDGRWSGGEPVCVDIDPPKIRCPHSREKMAEPEKLTARVYWDPPLVKDSADGTITRVTLRGPEPGSHFPEGEHVIRYTAYDRAYNRASCKFIVKVQVRRCPILKPPQHGYLTCSSAGDNYGAICEYHCDGGYERQGTPSRVCQSSRQWSGTPPVCTPMKINVNVNSAAGLLDQFYEKQRLLIVSAPDPSNRYYKMQISMLQQSTCGLDLRHVTIIELVGQPPQEVGRIREQQLSAGIIEELRQFQRLTRSYFNMVLIDKQGIDRERYMEPVTPEEIFTFIDDYLLSNEELARRVEQRDLCE", "sequence_length": 468, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a4b58bd8c9053b66db3bfc47b06055279892efc3b5423260bb119cff373c886e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R054.json", "taxon_id": "10090", "uniprot_accession": "Q8R054", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4174-ipr025232.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4174-ipr025232.yaml" } ], "pfam_ids": [ "PF13778" ], "protein_name": "Coiled-coil domain-containing protein 80", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMWKMGPHFTTLLAMWLVCGSASHSPALDSDSHTGRKVPLVSPISSRSARYLRHTGRSGGVEKSTQEEPNPQPFQRRKSVPVLRLAHPTMRPPPSGINGVPVRPEVRPIARSSAREMVRDEGSSARTRMLRFPSGSSSPNILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQAGEEGGKVRRITNEGQILEQPLDPNLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVRLEAMYEVIDQGPIRRIEKIRQKGFVQKCKASGIEGHVVQEGNEGGGGAGGTGLGGDKRKEDPRRTQVHPTREAPRKQATSKAATPQPPPTPRATTLPPAPVTTATRATSRVVTIAARPTTTTAYPATQRPWTSRLHPFSVSHRPPATAEVTTARGPSVSEQLYPLPRKEQQREKPQATRRPSKATNYGSFTATPPPTLWEVSARVVGTSRFRDNRTDKREHGHQDPNAVPGPHKPVKGKLPKKKDRILSNEYEDKYDLSQPTSSQGEEERQVDSVPSQNAKESKKLEKLEKPEKEKKKKGKSAKQDKLLKSEKQAKKAEKKTKQEKDKNKKKKAGKTEQDDNQKPTAKHLAPSPKKSVADLLGSFEGKRRLLLITTPKAENNMYVQQRDEYLESFCKMATRRISVVTIFGPVNNSSMKIDHFQLDNEKPMRVVDDDDLVDQHLISELRKEYGMTYDDFFMVLTDVDLRVKQYYEVPIAMKSVFDLIDTFQSRIKDMEKQKKEGIACKEDKRQSLENFLSRFRWRRRLLVISAPNDEDWAYSQQLSALNGQACNFGLRHITILKLLGVGEEVGGVLELFPINGSSIVEREDVPAHLVKDIRNYFQVSPEYFSMLLVGKDGNVKSWYPSPMWSMVIVYDLIDSMQLRRQEMAIQQSLGMRCPEDEYAGYGYHSYHQGYQDGYQDDYRHHESYHHGYPY", "sequence_length": 949, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e7d2d9c4a9d60363a4f065a563f50d8e64be08cd2bf1324e73315770e8c4a5b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R2G6.json", "taxon_id": "10090", "uniprot_accession": "Q8R2G6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-cell-proliferation-involved-in-contact-inhibition-go0060244.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0060244", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-cell-proliferation-involved-in-contact-inhibition-go0060244.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4174-ipr025232.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4174-ipr025232.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hyr-domain-ipr003410.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR003410", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hyr-domain-ipr003410.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/hyr.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/hyr.yaml" } ], "pfam_ids": [ "PF00084", "PF02494", "PF13778" ], "protein_name": "Sushi-repeat-containing protein SRPX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSPGLRPELLLPQVLPLLLALLHVLPSQGFPGSGDSPLEDDGVWYSHSLYKDTPWCSPIKVKYGDVYCRAPPGGYYKTALGTRCDIRCRKGYELHGSSQLICQSNKRWSDKVICKQKRCPTLTMPANGGFKCVDGAYFNSRCEYYCSPGYTLKGERTVTCMDNKAWSGRPASCVDLEPPRIKCPSVKERIAEPNKLTVRVSWESPEGRDTADGILTDVILKGLPPGSNFPEGDHKIEYTVYDRAENKGTCKFRVKVRVRRCGKLNAPENGYMKCSSDGDNYGATCEFSCIGGYELQGSPARVCQSNLAWSGTEPSCAAMNVNVGVRTAAALLDQFYEKRRLLIVSTPTARNLLYRLQLGMLQQAQCGLDLRHVTVVELVGVFPTLIGRIRAKIMPPALALQLRLLLRIPLYSFSMVVVDKHGMDKERYVSLVTPMALFNLIDTFPLRKEEMILQAEMGQTCNV", "sequence_length": 464, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b6538c465ec89363b092f3cabbfdaaaf81d20fc4d6a7fdc3dc050a8245bbb52f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9R0M3.json", "taxon_id": "10090", "uniprot_accession": "Q9R0M3", "uniprot_release": "2026_03" } ], "pfam_id": "PF13778", "short_name": "DUF4174", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13779", "short_name": "DUF4175", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13780", "short_name": "DUF4176", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4177-pf13783.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13783", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4177-pf13783.yaml" } ], "pfam_ids": [ "PF13783" ], "protein_name": "Uncharacterized protein YjzH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKEYEFVRVELSTMRRRPKEDYQQIIHDYAKRGWRFVQIFAPSIDGYGAAAYFEIIFERDAEKA", "sequence_length": 64, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5acd0b36a680912fae7c45ad53063e37eeb5fccda58ecb326f3fb8f4b7594944", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0H3Z2.json", "taxon_id": "224308", "uniprot_accession": "C0H3Z2", "uniprot_release": "2026_03" } ], "pfam_id": "PF13783", "short_name": "DUF4177", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aquifex aeolicus (strain VF5)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4178-pf13785.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13785", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4178-pf13785.yaml" } ], "pfam_ids": [ "PF13785" ], "protein_name": "Uncharacterized protein aq_1347", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFLERIKKLFSKEEEKQEESILSNPLERLKKGDIIEIDGETWEVTDVALYDYGASKEKEWEIRSASRRGFLSLEEGKIYFFEEIDPEELEPDPGEHFRKYGKPPEYVTYKGKRYRLKYAGKAKYIKNLESYPVTIWEFRSEDGEMIDLEIWDEYEIEAYKGRELQEWEIESILPR", "sequence_length": 176, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e90640420710957b63d0dd00a7e39e49face495b5299ea3490e8aef7b34f6544", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O67362.json", "taxon_id": "224324", "uniprot_accession": "O67362", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4178-pf13785.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13785", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4178-pf13785.yaml" } ], "pfam_ids": [ "PF13785" ], "protein_name": "Uncharacterized protein Mb2628", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGNLLVVIAVALFIAAIVVLVVAIRRPKTPATPGGRRDPLAFDAMPQFGPRQLGPGAIVSHGGIDYVVRGSVTFREGPFVWWEHLLEGGDTPTWLSVQEDDGRLELAMWVKRTDLGLQPGGQHVIDGVTFQETERGHAGYTTEGTTGLPAGGEMDYVDCASAGQGADESMLLSFERWAPDMGWEIATGKSVLAGELTVYPAPPVSA", "sequence_length": 206, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7061ab8581b7b2b88b0127cccca2935ce6e700e8b878333cbdb0bb4a82180a24", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P65030.json", "taxon_id": "233413", "uniprot_accession": "P65030", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4178-pf13785.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13785", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4178-pf13785.yaml" } ], "pfam_ids": [ "PF13785" ], "protein_name": "Uncharacterized protein MT2673", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGNLLVVIAVALFIAAIVVLVVAIRRPKTPATPGGRRDPLAFDAMPQFGPRQLGPGAIVSHGGIDYVVRGSVTFREGPFVWWEHLLEGGDTPTWLSVQEDDGRLELAMWVKRTDLGLQPGGQHVIDGVTFQETERGHAGYTTEGTTGLPAGGEMDYVDCASAGQGADESMLLSFERWAPDMGWEIATGKSVLAGELTVYPAPPVSA", "sequence_length": 206, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7061ab8581b7b2b88b0127cccca2935ce6e700e8b878333cbdb0bb4a82180a24", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WL72.json", "taxon_id": "83331", "uniprot_accession": "P9WL72", "uniprot_release": "2026_03" } ], "pfam_id": "PF13785", "short_name": "DUF4178", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13786", "short_name": "DUF4179", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13788", "short_name": "DUF4180", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4181-pf13789.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13789", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4181-pf13789.yaml" } ], "pfam_ids": [ "PF13789" ], "protein_name": "Uncharacterized protein YwrE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTNFWILMLIAITISLASQFFIKKKYGIDKSGWRYKHVSNTHKWIEITLLILFVFSLSFFPVEYLLLLFFIVIDSIRIFMEWHYRPEDKQYMYHIVEVSLMFMLLIYVCTL", "sequence_length": 111, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ae9e72012eaabc80d65cfffc35bc7c7e05084cee4d103464ce7b66284fc53b3a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O05219.json", "taxon_id": "224308", "uniprot_accession": "O05219", "uniprot_release": "2026_03" } ], "pfam_id": "PF13789", "short_name": "DUF4181", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sr1p-pf13790.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13790", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sr1p-pf13790.yaml" } ], "pfam_ids": [ "PF13790" ], "protein_name": "Uncharacterized protein YkzW", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTIVCQDCNEAIHYFEDEKVTTLYGTCCGQCQCPVDEE", "sequence_length": 39, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c363114e204592c4d48ae2d66a8fff398c33abf88cb6eddc21642b048148d6e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0H410.json", "taxon_id": "224308", "uniprot_accession": "C0H410", "uniprot_release": "2026_03" } ], "pfam_id": "PF13790", "short_name": "SR1P", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13799", "short_name": "F-ENAs", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13803", "short_name": "DUF4184", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus sp. (strain MF297-2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4185-pf13810.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13810", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4185-pf13810.yaml" } ], "pfam_ids": [ "PF13810" ], "protein_name": "Notoamide biosynthesis cluster protein J", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRIMSIMLHLLATILLSSAVSAQNANAASTRRLIGEDRESGRRWGVAATDLGIPYDQHNGEIGFLFGDTVSTKWVQEAKDLRSPVMLRSGIHPGEDGGIVFESAAGVDGDGLAPRLFYNGDRGDDGTGTGTWEFTVLPNDGISFPETGEHIISYLSIMNFTTPWTPNYSGLAYSTDGNTFTRLPTKWLNNDNNTDPFQMWTMQRDGDWVYVFTVRSAPQYGPLMLQRVPWDKMTNKTEYQGWGWNGEDWGWQRPCSPILDGYFGEPSVRRLHDGTWAMVYLNASTSTPHIVSRSAKDPTGPWSEEKVQVNQEGDGSLLYGGFIHPWSTSKGNQLYLMVSNWTSTSNLSQTTEAVADYEGTVSVSQFTGTL", "sequence_length": 370, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2cba2abbceab63fc7c5e83109e18d3d65bec52150d037ae7f2ca463e865eec25", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E1ACQ5.json", "taxon_id": "877550", "uniprot_accession": "E1ACQ5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus versicolor", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4185-pf13810.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13810", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4185-pf13810.yaml" } ], "pfam_ids": [ "PF13810" ], "protein_name": "Notoamide biosynthesis cluster protein J'", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNMATMLHLLTLILLTSPASTQTANAVPKRRLIGEDRESGRRWGVAATDLGIPYDMHNGQVGYLFGDTVSTMWVQEAKDLRSPVMLLSGIHPGEDGGIFFESAAGVDGDGLAPRLFYNGDHGDDGTGTWEFTVLPNDGISFPETGEHIISYTSIMNFTTSWTPNYAGLAYSTDGNSFSRLPTKWLNNDNNTDPFQMWTMQRDGDWVYVFTVRCARQYGPMMLQRVPWDKMTDKTEYQGWGWNGEDWGWQRPCSPILDGYFGEPSVRRLQDGTWAMVYLNASTSTPHIVSRTARGPTGPWSEETVQVNQAGDESLLYGGFIHPWSTGERNQLYLMVSNWTSTSDAAPTPEGLVSVSQFTGTL", "sequence_length": 362, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3b9c1c037bed8656d6a7cc3db1e32cdf8982b83fb7efe8299343b1a7008cc9e7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/L7WU85.json", "taxon_id": "46472", "uniprot_accession": "L7WU85", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium smegmatis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4185-pf13810.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13810", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4185-pf13810.yaml" } ], "pfam_ids": [ "PF13810" ], "protein_name": "Uncharacterized 35.9 kDa protein in asd 3'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRIGPSAGTGTPTGDYGIGATDLCEFMEFPSRVLQVCGDSFAGQAVGFGGWYSPIALHVESDSIDDPAGIRYNGVSGVDKPLLADPTPPGSSQLPAGVVSINRENYMMVTVTKDLTPQTSRLVKADAAKSSWPTVPGSVREASYLGGNQSQVSGYYDPIPTPDSPRGWVYIVANNFDRSGPVFLYRVPPQDFTDRAAWQGWSSVSGRWGDPATALWPDRVGGDGIRLIDGKAVLSYFNATTGNMEMRVADDPTQLGTAPVTTVVYASDWPDPAETLPPPEVNRLAQPYGGYISPASTLDEVRVFISQWNTRPRGGTPYRVIQYAVNPLKPWE", "sequence_length": 333, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "abdcc292255bcbd6c6ecb045707109ed9f461fed6bef3cebbfc98b69a9e9492b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41402.json", "taxon_id": "1772", "uniprot_accession": "P41402", "uniprot_release": "2026_03" } ], "pfam_id": "PF13810", "short_name": "DUF4185", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4186-pf13811.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13811", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4186-pf13811.yaml" } ], "pfam_ids": [ "PF13811" ], "protein_name": "Uncharacterized protein YneG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQSLDPLFARLSRSKFRSRFRLGMKERQYCLEKGAPVIEQHAADFVAKRLAPALPANDGKQTPMRGHPVFIAQHATATCCRGCLAKWHNIPQGVSLSEEQQRYIVAVIYHWLVVQMNQP", "sequence_length": 119, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c3edc3109c3d0a2d6c8929d7fbd1aa4397f8a3ba85e4ad5983e2fb596105897b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76148.json", "taxon_id": "83333", "uniprot_accession": "P76148", "uniprot_release": "2026_03" } ], "pfam_id": "PF13811", "short_name": "DUF4186", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4187-ipr025239.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4187-ipr025239.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4187-pf13821.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13821", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4187-pf13821.yaml" } ], "pfam_ids": [ "PF01585", "PF13821" ], "protein_name": "Uncharacterized protein YLR271W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEESKTKRKEDRIDLKNTPPQKKSKRDSTNDETARTSLRSIMPRGYKMMENMGYKEGETLGSNESALKEPIKVEINTKRRGIRAEKPDPSTMNDMQMSEQRFIKRESEMKNNKRLKKIWYRIQKVAFEMMGDSDLYNPGEDPRDFNVLWRSYVMQLNEEVAKNDLNNHSNNDNEDKNNMIPMVNESLEASPAIKGEKFGRPSTLIDCDTSIIGSRITKDTELAELEELSIEKRITKLNIFLRSEKYYCFFCGIKYKDEGDLYEHCPGVNEDDHK", "sequence_length": 274, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "19be598239a6bdf0e283bb55fb8a057f7d39e3f6fc05a4d2f78fae9d83b58900", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06152.json", "taxon_id": "559292", "uniprot_accession": "Q06152", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4187-ipr025239.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4187-ipr025239.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4187-pf13821.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13821", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4187-pf13821.yaml" } ], "pfam_ids": [ "PF01585", "PF13821" ], "protein_name": "G patch domain-containing protein 11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTEEEDYMSDSFINVQEDVRPGVPMLRQIREARRKEEKQQQANLRNRQKSVKEEERERRDIGLKNALGCENKGFALLQKMGYKSGQALGKSGDGIVEPIPLNVKTGKSGIGHESSLKRKAEERLENYRRKIHMKNQNEAKAAEEFRMRLKSKQDEMRLEGDLRRSQRACQQLDAQKNIQVPREAWYWLRPEEETEEEEEEEEKEEQDEDECPSEDLSVLEKLQILTGYLREEHLYCIWCGTAYEDKEDLSSNCPGPTSADHD", "sequence_length": 262, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "231631a2f5343beb8d51ef16cdfd82b5a9941d4530cd1f83bc0213c551599e7c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UFS4.json", "taxon_id": "10090", "uniprot_accession": "Q3UFS4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4187-ipr025239.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4187-ipr025239.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4187-pf13821.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13821", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4187-pf13821.yaml" } ], "pfam_ids": [ "PF01585", "PF13821" ], "protein_name": "G patch domain-containing protein 11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSARSTALNRGEQRAVRYYSHMKLNMAEEEDYMSDSFINVQEDIRPGLPMLRQIREARRKEEKQQEANLKNRQKSLKEEEQERRDIGLKNALGCENKGFALLQKMGYKSGQALGKSGGGIVEPIPLNIKTGKSGIGHEASLKRKAEEKLESYRKKIHMKNQAEEKAAEQFRMRLKNKQDEMKLEGDLRRSQRACQQLDVQKNIQVPREAWYWLRLEEETEEDEEEKEQDEDEYKSEDLSVLEKLQILTSYLREEHLYCIWCGTAYEDKEDLSSNCPGPTSADHD", "sequence_length": 285, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60935118174a6b898acfbfff3c5d32e9a0bb91293e99ceb11fa2aa205f3ba2f4", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N954.json", "taxon_id": "9606", "uniprot_accession": "Q8N954", "uniprot_release": "2026_03" } ], "pfam_id": "PF13821", "short_name": "DUF4187", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)", "origins": [ { "cited_uniprot_accession": "Q4WAZ2", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/polyketides/fumagillin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:48635", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/polyketides/fumagillin.yaml" } ], "pfam_ids": [ "PF13826" ], "protein_name": "Monooxygenase af470", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDQSMKPLLSPTERPRRHLTASVISFFLPNQFRLSTILCIGALLQTILCAVLPLRYAAVPCVTVLLISVLTTIQECFQPNTNSFMADVIRGRTTAQIPGKDGTHGREPGKGSVVVFHLGIQYNHPLGVFAPHMREISNRFLAMQQDILRRKDELGLLAVQNWRGSERDSGNTTLIKYFFKDVESIHKFAHEPLHKETWTYYNQHHPGHVGIFHETFITKDGGYESMYVNCHPILLGRGEVKVNNRKDGTEEWVGTLVSADTPGLKSFKARLGRDD", "sequence_length": 275, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4978432c9e08fe20badf351132319b352e3a5f3d3a336b85570ef8fe6eb3977d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4WAZ2.json", "taxon_id": "330879", "uniprot_accession": "Q4WAZ2", "uniprot_release": "2026_03" } ], "pfam_id": "PF13826", "short_name": "Monooxy_af470-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4189-pf13827.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13827", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4189-pf13827.yaml" } ], "pfam_ids": [ "PF13827" ], "protein_name": "Protein Mb1300c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDTWACN", "sequence_length": 124, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5b484dcc2e808fdba36100f433a67203902d13ca49db55fbd94cceaed2ffc1cc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A5E2.json", "taxon_id": "233413", "uniprot_accession": "P0A5E2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4189-pf13827.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13827", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4189-pf13827.yaml" } ], "pfam_ids": [ "PF13827" ], "protein_name": "Protein MT1307", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDTWACN", "sequence_length": 124, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5b484dcc2e808fdba36100f433a67203902d13ca49db55fbd94cceaed2ffc1cc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM44.json", "taxon_id": "83331", "uniprot_accession": "P9WM44", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4189-pf13827.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13827", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4189-pf13827.yaml" } ], "pfam_ids": [ "PF13827" ], "protein_name": "Protein Rv1269c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDTWACN", "sequence_length": 124, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5b484dcc2e808fdba36100f433a67203902d13ca49db55fbd94cceaed2ffc1cc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM45.json", "taxon_id": "83332", "uniprot_accession": "P9WM45", "uniprot_release": "2026_03" } ], "pfam_id": "PF13827", "short_name": "DUF4189", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13828", "short_name": "DUF4190", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4191-pf13829.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13829", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4191-pf13829.yaml" } ], "pfam_ids": [ "PF13829" ], "protein_name": "Uncharacterized protein MT2276", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKPRNAAESKAAKAQANAARKAAARQRRAQLWQAFTLQRKEDKRLLPYMIGAFLLIVGASVGVGVWAGGFTMFTMIPLGVLLGALVAFVIFGRRAQRTVYRKAEGQTGAAAWALDNLRGKWRVTPGVAATGNLDAVHRVIGRPGVIFVGEGSAARVKPLLAQEKKRTARLVGDVPIYDIIVGNGDGEVPLAKLERHLTRLPANITVKQMDTVESRLAALGSRAGAGVMPKGPLPTTAKMRSVQRTVRRK", "sequence_length": 250, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "889ef1657516a95ee51dd3fe9d6f2de5c7d9c90a3b8917930f2d2ffb3ae405d3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLI0.json", "taxon_id": "83331", "uniprot_accession": "P9WLI0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4191-pf13829.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13829", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4191-pf13829.yaml" } ], "pfam_ids": [ "PF13829" ], "protein_name": "Uncharacterized protein Rv2219", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKPRNAAESKAAKAQANAARKAAARQRRAQLWQAFTLQRKEDKRLLPYMIGAFLLIVGASVGVGVWAGGFTMFTMIPLGVLLGALVAFVIFGRRAQRTVYRKAEGQTGAAAWALDNLRGKWRVTPGVAATGNLDAVHRVIGRPGVIFVGEGSAARVKPLLAQEKKRTARLVGDVPIYDIIVGNGDGEVPLAKLERHLTRLPANITVKQMDTVESRLAALGSRAGAGVMPKGPLPTTAKMRSVQRTVRRK", "sequence_length": 250, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "889ef1657516a95ee51dd3fe9d6f2de5c7d9c90a3b8917930f2d2ffb3ae405d3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLI1.json", "taxon_id": "83332", "uniprot_accession": "P9WLI1", "uniprot_release": "2026_03" } ], "pfam_id": "PF13829", "short_name": "DUF4191", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13830", "short_name": "DUF4192", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13834", "short_name": "DUF4193", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus cereus (strain Q1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/jetb-pf13835.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13835", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/jetb-pf13835.yaml" } ], "pfam_ids": [ "PF13835" ], "protein_name": "Wadjet protein JetB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQNVSEREREEMGIVVNYLFSHNFLLKEFEREKYHLAVRNKDIIKQYLQVIGWDFIVDEKHGCIVIVSPHYEHRLKLKKDETIWLLVLRLIYEEKRSALSISQYPFTTLQEIKGKYETFRLPFVSKTKLRELVQIGKQNQLLRPIDNDIESDDCRFQLFHSCIHVLQQGDLNVLYEKIKSYSEGGDHSEMDEETTIN", "sequence_length": 197, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e6251b52c31183b39af46db30db7b17baa113582f4c6cd18f64c899dd2e63dd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B9IS84.json", "taxon_id": "361100", "uniprot_accession": "B9IS84", "uniprot_release": "2026_03" } ], "pfam_id": "PF13835", "short_name": "JetB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4195-ipr025243.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025243", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4195-ipr025243.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4195-pf13836.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13836", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4195-pf13836.yaml" } ], "pfam_ids": [ "PF13836" ], "protein_name": "Zinc finger protein 280A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDIFLCKKVESPKKNLRESKQREEDDEDPDLIYVGVEHVHRDAEVLFVGMISNSKPVVSNILNRVTPGSNSRRKKGHFRQYPAHVSQPANHVTSMAKAIMPVSLSEGRSTDSPVTMKSSSEPGYKMSSPQVVSPSSSDSLPPGTQCLVGAMVSGGGRNESSPDSKRLSTSDINSRDSKRVKLRDGIPGVPSLAVVPSDMSSTISTNTPSQGICNSSNHVQNGVTFPWPDANGKAHFNLTDPERASESALAMTDISSLASQNKTFDPKKENPIVLLSDFYYGQHKGDGQPEQKTHTTFKCLSCVKVLKNIKFMNHMKHHLEFEKQRNDSWEDHTTCQHCHRQFPTPFQLQCHIDSVHIAMGPSAVCKICELSFETDQVLLQHMKDHHKPGEMPYVCQVCHYRSSVFADVETHFRTCHENTKNLLCLFCLKLFKTAIPYMNHCWRHSRRRVLQCSKCRLQFLTLKEEIEHKTKDHQTFKKPEQLQGLPSETKVIIQTSVQPGSSGMASVIVSNTDPQSSPVKTKKKTAMNTRDSRLPCSKDSS", "sequence_length": 542, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2086fd52999956697ce55944a34dc24853defafd0bea00f44d9b5569687cc9be", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P59817.json", "taxon_id": "9606", "uniprot_accession": "P59817", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4195-ipr025243.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025243", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4195-ipr025243.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pogz-z280c-d-like-double-zinc-finger-ipr057618.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pogz-z280c-d-like-double-zinc-finger-ipr057618.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/z280c-d-like-c2h2-zinc-finger-ipr059074.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR059074", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/z280c-d-like-c2h2-zinc-finger-ipr059074.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zf-c2h2-z280c-d-pf25414.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25414", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-c2h2-z280c-d-pf25414.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zf-pogz-pf25429.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25429", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-pogz-pf25429.yaml" } ], "pfam_ids": [ "PF13836", "PF25414", "PF25429" ], "protein_name": "Zinc finger protein 280D", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVTTYIKSDLQLDGRQFFQPKDNLKMAELFMECEEEELEPWQKKVKEVEEDDDDEPIFVAEIASSKPAISNILNRVNPSSHSRGIKNGILNRGFTASFKPTSQRCLNSASNPVAALPVNFHPESRSSDSSVIVQPFSKPGYVTNSPRVLSNNSSELLFDLTQDTGLSHYQGGPTLSIAGLNETSFLSKRPSGSDISSVNPKKPKPSENTSGIDASSVISSEKSPSVISLQVVPSQGANCSSSQSKNGTTFPRACPKCDIHFNLLDPLKNHMTYCCPDMINNFLGLTKADNLNSANEAKTLESEKGKLIMLVNDFYYGKHEGDVLEEQKTHTTFKCFSCLKVLKNNIRFMNHMKHHLELEKQSSESWEKHTTCQHCYRQFPTPFQLQCHIESTHTPHEFSTICKICELSFETEQILLQHMKDNHKPGEMPYICQVCNYRSSLFSEVESHFRTSHENTKNLLCPFCLKVIKIATPYMHHYMKHQKKGIHRCTKCRLQFLTCKEKMDHKTQHHRTFVKPKQLEGLPPGTKVTIRASVGPLQSGSSVTPSISPSTSTLQLSPPEPDNVTAKNHVKLTTSTPNTTISDPSKANETKSNGSKSKNKSKVSNMQKKQSTLSSSNKKSKVNTALRNLRLRRGVHECIECSSEVKDFANHFPTYVHCSFCRYNTSCSKAYVNHMMSFHSNRPSKRYCIFKKHSENLRGISLVCLNCDFLTDVSGLDNMATHLSQHETHSCRVLVEQVSVCIPTSERLSEIKTEAPTKGQEPVSKETARHSRAEGEPGASHSGSKQDKVPSSEEGTGCDASVCEAAAATHCEKDVTVSDTENVSSSKNILSHDPDVGTDTMEKEEKTHHACQEMELKVDQSSESTNPTEAELSSETRQGLQLTSGDVGIDQFLRQGDEPKSVNSDASDPGSVRLEPLTPSEVLEYEATEILHDGDDPSANTSDTVSDQTGGSPGGSNPCRAETAVDLADGEERS", 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"cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pogz-z280c-d-like-double-zinc-finger-ipr057618.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pogz-z280c-d-like-double-zinc-finger-ipr057618.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/z280c-d-like-c2h2-zinc-finger-ipr059074.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR059074", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/z280c-d-like-c2h2-zinc-finger-ipr059074.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4195-pf13836.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13836", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4195-pf13836.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zf-c2h2-z280c-d-pf25414.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25414", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-c2h2-z280c-d-pf25414.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zf-pogz-pf25429.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25429", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-pogz-pf25429.yaml" } ], "pfam_ids": [ "PF13836", "PF25414", "PF25429" ], "protein_name": "Zinc finger protein 280D", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDNPFQPKSNSKMAELFMECEEEELEPWQKKVKEVEDDDDDEPIFVGEISSSKPAISNILNRVNPSSYSRGLKNGALSRGITAAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSSVIVQPFSKPGYITNSSRVVSNKSSELLFDLTQDTGLSHYQGGPTLSMAGMSESSFLSKRPSTSEVNNVNPKKPKPSESVSGANSSAVLPSVKSPSVTSSQAMLAKGTNTSSNQSKNGTPFPRACPKCNIHFNLLDPLKNHMKYCCPDMINNFLGLAKTEFSSTVNKNTTIDSEKGKLIMLVNDFYYGKHEGDVQEEQKTHTTFKCFSCLKILKNNIRFMNHMKHHLELEKQSSESWENHTTCQHCYRQFPTPFQLQCHIESTHTPHEFSTICKICELSFETEHVLLQHMKDNHKPGEMPYVCQVCNYRSSSFSDVETHFRTSHENTKNLLCPFCLKVIKIATPYMHHYMKHQKKGIHRCTKCRLQFLTCKEKMDHKTQHHRTFIKPKQLEGLPPGTKVTIRASVGPLQSGASPTPSISASASTLQLSPPRTKNITAKNPAKSNTSKPNTVKSNASKPNTSKPNGSKSKYKPKISNMQKKQSTLASSNKKSKVNTALRNLRYRRGIHKCIECCSEIKDFANHFPTYVHCSFCRYNTSCSKAYVNHMMSFHSNRPSKRFCIFKKHSENLRGITLVCLNCDFLSDVSGLDNMATHLSQHKTHTCQVVMQKVSVCIPTSEHLSELKKEAPAKEQEPVSKEIARPNMAERETETSNSESKQDKAASSKEKNGCNANSFEGSSTTKSEESITVSDKENETCLADQETGSKNIVSCDSNIGADKVEKKKQIQHVCQEMELKMCQSSENIILSDQIKDHNSSEARFSSKNIKDLRLASDNVSIDQFLRKRHEPESVSSDVSEQGSIHLEPLTPSEVLEYEATEILQKGSGDPSAKTDEVVSDQTDDIPGGNNPSTTEATVDLEDEKERS", "sequence_length": 979, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "de07acf8a8986a3242023a438b92e686aa15430290b855988462964e2ecf5a19", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6N043.json", "taxon_id": "9606", "uniprot_accession": "Q6N043", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4195-ipr025243.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025243", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4195-ipr025243.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pogz-z280c-d-like-double-zinc-finger-ipr057618.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pogz-z280c-d-like-double-zinc-finger-ipr057618.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/z280c-d-like-c2h2-zinc-finger-ipr059074.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR059074", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/z280c-d-like-c2h2-zinc-finger-ipr059074.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zf-c2h2-z280c-d-pf25414.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25414", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-c2h2-z280c-d-pf25414.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zf-pogz-pf25429.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25429", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-pogz-pf25429.yaml" } ], "pfam_ids": [ "PF13836", "PF25414", "PF25429" ], "protein_name": "Zinc finger protein 280C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKDNSVQEKGLFLSSWKLDNSKMAELFMECEEEELEPWQQKVEESQSKDDDDELIFVGEISSSKPAISNILNRCSPGSSSKGLKNGSFNPAISNIFKPTSQHYRNPSSNALVALPSFHPALKSSESSDGQTVSKLDFTKTSPQEDSGACSVSQSDSTQDIPSSNILQPRTGVDQTLGLKHPSTSKVNSVNPKKPKTSASISETRPCSSSSSQTAPSGASSQTVLSNVNTSSVQSAPGSSSLRSCPKCNVKFRLLDPLKCHMKRCCPDMINKFLETLKSENSKAVSKATTDSDKEKLIMLVSDFYYGRHEGTIEESQKTHTTFKCFSCTKVLKNNIRFMNHMKHHLELEKQNNETWESHTTCQHCYRQYPNPFQLQCHIESTHTPHDFSTICKICELSFETEHMLLQHMKDTHKPGEMPYICQVCQFRSSIFSDVETHFRSSHENTKNLLCPFCLKVSRMATPYMNHYMRHQKKGIYRCPKCRLQFLTSKEKTEHKLEHRTFIKPKELEGLPPGTKVIIRASLGSSQSRASSPPSSTIPSTSLQLSVPKSKSTTTKNNSKVSANKATTTSPQTVATTTGKPSASKPGTGTTKSKAKPSYKQKRQRTRKNKFSIDLKNLRCHQGSHMCIECRSKIKDFSSHFSTHINCDFCKYTTNCNKAFTNHMSSHNDHPSKQLYIFKKQSRARRGITLVCLKCDFLADTSGLDRMAKHLNQRKTHTCQVVIENVTERAVTSESASDGLFK", "sequence_length": 742, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4a7c8e1bc7b847517713113b62b17b32750358e8183fff6ef9c5cbe27f7da925", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P3Y5.json", "taxon_id": "10090", "uniprot_accession": "Q6P3Y5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4195-ipr025243.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025243", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4195-ipr025243.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4195-pf13836.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13836", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4195-pf13836.yaml" } ], "pfam_ids": [ "PF13836" ], "protein_name": "Zinc finger protein 280B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEQSCEEEKEPEPQKNIQETKQVDDEDAELIFVGVEHVNEDAELIFVGVTSNSKPVVSNILNRVTPGSWSRRKKYDHLRKDTARKLQPKSHETVTSEAVTVLPASQLESRSTDSPIIIEPLSKPDYRNSSPQVVPNNSSELPSPLITFTDSLHHPVSTALSVGGINESPRVSKQLSTFEVNSINPKRAKLRDGIIEGNSSASFPSDTFHTMNTQQSTPSNNVHTSLSHVQNGAPFPAAFPKDNIHFKPINTNLDRANELAKTDILSLTSQNKTFDPKKENPIVLLSDFYYGQHKGEGQPEQKTHTTFKCLSCVKVLKNVKFMNHVKHHLEFEKQRNDSWENHTTCQHCHRQFPTPFQLQCHIENVHTAQEPSTVCKICELSFETDQVLLQHMKDHHKPGEMPYVCQVCHYRSSVFADVETHFRTCHENTKNLLCPFCLKIFKTATPYMCHYRGHWGKSAHQCSKCRLQFLTFKEKMEHKTQCHQMFKKPKQLEGLPPETKVTIQVSLEPLQPGSVDVASITVSTSDSEPSLPRSKSKISKKSH", "sequence_length": 543, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "315e161a341f65a67eb1e26e480a86d9e65eb3dcb729eed4752d653c712b2111", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q86YH2.json", "taxon_id": "9606", "uniprot_accession": "Q86YH2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pogz-z280c-d-like-double-zinc-finger-ipr057618.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/z280c-d-like-c2h2-zinc-finger-ipr059074.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR059074", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/z280c-d-like-c2h2-zinc-finger-ipr059074.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zf-c2h2-z280c-d-pf25414.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25414", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-c2h2-z280c-d-pf25414.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zf-pogz-pf25429.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25429", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zf-pogz-pf25429.yaml" } ], "pfam_ids": [ "PF13836", "PF25414", "PF25429" ], "protein_name": "Zinc finger protein 280C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDDDKPFQPKNISKMAELFMECEEEELEPWQKKVEETQDEDDDELIFVGEISSSKPAISNILNRGHSSSSSKGIKSEPHSPGIPEIFRTASQRCRDPPSNPVAASPRFHLVSKSSQSSVTVENASKPDFTKNSQVGSDNSSILLFDSTQESLPPSQDIPAIFREGMKNTSYVLKHPSTSKVNSVTPKKPKTSEDVPQINPSTSLPLIGSPPVTSSQVMLSKGTNTSSPYDAGADYLRACPKCNVQFNLLDPLKYHMKHCCPDMITKFLGVIVKSERPCDEDKTDSETGKLIMLVNEFYYGRHEGVTEKEPKTYTTFKCFSCSKVLKNNIRFMNHMKHHLELEKQNNESWENHTTCQHCYRQYPTPFQLQCHIESTHTPHEFSTICKICELSFETEHILLQHMKDTHKPGEMPYVCQVCQFRSSTFSDVEAHFRAAHENTKNLLCPFCLKVSKMATPYMNHYMKHQKKGVHRCPKCRLQFLTSKEKAEHKAQHRTFIKPKELEGLPPGAKVTIRASLGPLQSKLPTAPFGCAPGTSFLQVTPPTSQNTTARNPRKSNASRSKTSKLHATTSTASKVNTSKPRGRIAKSKAKPSYKQKRQRNRKNKMSLALKNIRCRRGIHKCIECHSKIKDFASHFSIYIHCSFCKYNTNCNKAFVNHMMSSHSNHPGKRFCIFKKHSGTLRGITLVCLKCDFLADSSGLDRMAKHLSQRKTHTCQVIIENVSKSTSTSEPTTGCSLK", "sequence_length": 737, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a4a597669920e8b7b2444be8059ae4a82ec3ae3df804c5ddfe4db25fd0d6c89e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8ND82.json", "taxon_id": "9606", "uniprot_accession": "Q8ND82", "uniprot_release": "2026_03" } ], "pfam_id": "PF13836", "short_name": "DUF4195", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4196-pf13846.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4196-pf13846.yaml" } ], "pfam_ids": [ "PF13846", "PF13926" ], "protein_name": "Coiled-coil domain-containing protein 82", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVHARRHETRKNSKTQVPEQKSRVDWRRTKRSVSQLFDSDEELDSDEEIGSDEDLDGGESIDSDGKLDISKDSGINEIPEKETELNLIKVESERSNSKCHMNTSSSSADEEEMNKTKHNDLPDDEAHPGQAEGHHNKLTGQVLEEDVEDECIKPGKRKRLSSVMYDSDESDDSDILVRKASAKHPRRVVEDECSSLEMERETPEKSPAARKREYHQKLQELCERSRQKQRHNSGRNCESSEKDSCSSTDEDEDDDDYGDAENEDDYMIDDFVVGDEEADEENKNQGENLTTSQLKLVKQNSLYSFSDHYTHFERVVKALLINAFDGSFLETLYAGKRKKSYAQDMLTSLHYLDDRFIQPRLESLVSRSRWREQYKERVESYSDLSIHWKSPENCGCQACGLHRYCKFSVRLSGKLYNTRTMETDDFMSRDKQVFIVGRICAERTKIYHKLKHFKFKLYQDCCSIAYTKEVGDEQVKDTVKRLFCQLKKSGWIRKKHGQLEEYLNSADYFQDEKFKL", "sequence_length": 516, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1a750fb5604371328b962f8fd0683c03068d7004634e5a4f84f854ee363acc64", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q66H73.json", "taxon_id": "10116", "uniprot_accession": "Q66H73", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coiled-coil-domain-containing-protein-82-ipr025244.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025244", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coiled-coil-domain-containing-protein-82-ipr025244.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4211-ipr025451.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025451", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4211-ipr025451.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4196-pf13846.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4196-pf13846.yaml" } ], "pfam_ids": [ "PF13846", "PF13926" ], "protein_name": "Coiled-coil domain-containing protein 82", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVHVRRHETRKNSKTQKPEQKSRVDWHRTKRSISQLFDSDEELDSNEELDSDEEHDSGESIDSDEELDISKKSDINELPEKETELKLIKVESQGSNSKHLTNTSNSSADEEQLKETKHNDLPDDEAHPGQAENHHNRHTGQILEEDMEDEYIKPGKRKRLSSVMYDSDESDDSDILIRKASAKHPRRVVEDECSSLEMEQETPEKSSAARKREYHQKLQELSERSRQRRRRNSGRNFEDSEKDSCSGTGEEDEDEDEDDYRYDEDGDDYMIDDFVVRNEEGDDENSNQQGENLTTSQLKLVKQNSLYSFSDHYTHFERVVKALLINAFDESFLETLYAGTRKKSYAKDMLTSLHYLDNRFIQPRLESLVSRSRWKEQYKERVESYSNLNILSKSPENCVCQACGLHRHCKFSVHLSGKLYNIRTMETDDFMSHDKQVFTVGRICVERTRIYHKLKHFKFKLYQDCCLIAKPEEVGDEQVKDTVKRVFNHSKERGWIRKKYDQLQNFLNSADYFQDEKF", "sequence_length": 518, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b87fb4187ab57ecdde3056ec7c6ec3d4312a9e879b56c1ef403af35fcb835de8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PG04.json", "taxon_id": "10090", "uniprot_accession": "Q6PG04", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coiled-coil-domain-containing-protein-82-ipr025244.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025244", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coiled-coil-domain-containing-protein-82-ipr025244.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4211-ipr025451.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025451", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4211-ipr025451.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4196-pf13846.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4196-pf13846.yaml" } ], "pfam_ids": [ "PF13846", "PF13926" ], "protein_name": "Coiled-coil domain-containing protein 82", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIHVRRHETRRNSKSHVPEQKSRVDWRRTKRSSISQLLDSDEELDSEEFDSDEELDSDESFENDEELDSNKGPDCNKTPGSERELNLSKIQSEGNDSKCLINSGNGSTYEEETNKIKHRNIDLQDQEKHLSQEDNDLNKQTGQIIEDDQEKHLSQEDNDLNKQTGQIIEDDLEEEDIKRGKRKRLSSVMCDSDESDDSDILVRKVGVKRPRRVVEDEGSSVEMEQKTPEKTLAAQKREKLQKLKELSKQRSRQRRSSGRDFEDSEKESCPSSDEVDEEEEEDNYESDEDGDDYIIDDFVVQDEEGDEENKNQQGEKLTTSQLKLVKQNSLYSFSDHYTHFERVVKALLINALDESFLGTLYDGTRQKSYAKDMLTSLHYLDNRFVQPRLESLVSRSRWKEQYKERVENYSNVSIHLKNPENCSCQACGLHRYCKYSVHLSGELYNTRTMQIDNFMSHDKQVFTVGRICASRTRIYHKLKHFKFKLYQECCTIAMTEEVEDEQVKETVERIFRRSKENGWIKEKYGQLEEYLNFADYFQEEKFEL", "sequence_length": 544, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "63ae2897676690365b3d7318520206b13565d99465df18278ca41ff062111d96", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N4S0.json", "taxon_id": "9606", "uniprot_accession": "Q8N4S0", "uniprot_release": "2026_03" } ], "pfam_id": "PF13846", "short_name": "DUF4196", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13852", "short_name": "DUF4197", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13858", "short_name": "DUF4199", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/axonemal-doublet-microtubule-go0097545.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097545", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/axonemal-doublet-microtubule-go0097545.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4200-ipr025252.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4200-ipr025252.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A6NFT4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF13863" ], "protein_name": "Cilia- and flagella-associated protein 73", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "33dd184179ad0ce46864d89dd6d2bcf982df407a6a564870e73829d8bc2a50c6", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAVPWEEYFRLALQEKLSTKLPEQAEDHVPPVLRLLEKRQELVDADQALQAQKEVFRTKTAALKQRWEQLEQKERELKGSFIRFDKFLQDSEARRNRALRRAAEERHQAGRREVEALRLWTQLQELRREHARLQRRLKRLEPCARLLEQALELLPGFQEVPELVARFDGLAETQAALRLREREQLAELEAARARLQQLRDAWPDEVLAQGQRRAQLQERLEAARERTLQWESKWIQIQNTAAEKTLLLGRSRMAVLNLFQLVCQHQGQPPTLDIEDTEGQLEHVKLFMQDLSAMLAGLGQAEPAAPAS", "sequence_length": 308, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "33dd184179ad0ce46864d89dd6d2bcf982df407a6a564870e73829d8bc2a50c6", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/A6NFT4.json", "taxon_id": "9606", "uniprot_accession": "A6NFT4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/axonemal-doublet-microtubule-go0097545.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097545", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/axonemal-doublet-microtubule-go0097545.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4200-ipr025252.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4200-ipr025252.yaml" } ], "pfam_ids": [ "PF13863" ], "protein_name": "Cilia- and flagella-associated protein 73", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVTWEEYFRLVFSEKVQPKPLEQTGDDSSVLQLILEKKEELAVADLGLQAQKKEYRSTIESVNQRWRELEQKGQELQGSVISYDKFLKEVEARRAARKAIEERKITGNLDAELRRLRTQLKELRLQRARLQRKVQRLEPCARILKRALEKRPVFEEVSDLVARFETLVSTKAALKLEEQKRLVEMESTRAQLLSLQSEKQDEMLNLNQQRTQLVEQLEAAREHRQQWESKWTEILNSASEKTLLLGRARMAVLNLYHLVRLQQGRRQTLDVRDVEGQLEEVKRFIMNISATLAKLALAQPTATAS", "sequence_length": 306, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "49384ec1e32ac60d043551606535d53bfde09dda4560fc78c9e0a78222454cb8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/J3QPZ5.json", "taxon_id": "10090", "uniprot_accession": "J3QPZ5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/axonemal-doublet-microtubule-go0097545.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097545", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/axonemal-doublet-microtubule-go0097545.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4200-ipr025252.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4200-ipr025252.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4200-pf13863.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13863", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4200-pf13863.yaml" } ], "pfam_ids": [ "PF13863" ], "protein_name": "Cilia- and flagella-associated protein 100", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEIPSTIVSKNMTNDKNSLESMNISSSSSTEENPKKQARKNEEHGPDPSANPFHLSGDVDFFLLRDQERNKALSERQQQKTMRVHQKMTYSSKVSAKHTSLRRQLQLEDKQEDLEARAEAEHQRAFRDYTTWKLTLTKEKNVEPENMSGYIKQKRQMFLLQYALDVKRREIQRLETLATKEEARLERAEKSLEKDAALFDEFVRENDCSSVQAMRAAEKETKAKIEKILEIRDLTTQIVNIKSEISRFEDTLKHYKVYKDFLYKLSPKEWLEEQEKKHSFLKKAKEVSEASKESSVNSTPGDKGPGIKGKASSMWAKEGQGTKKPWRFLQTMRLGRSPSYLSSPQQGSQPSESSGGDSRGSNSPIPPTQEDTDSDGEEPQLYFTEPQQLLDVFRELEEQNLSLIQNSQETEKTLEELSHTLKHTQIRMDREVNQLKQWVTTMMMSITKEEDTAAELELKARVFHFGEYKGDQQDKLLESLNCKVLDVYRHCTGTQQEANLGTVQMLTIIEHQLDELLENLEHVPQVKIEQAERAKEKERRIRLREEKLQMQKILQEEHLQRARARAQAEIKKKRGRTLVCRSRPPAHRIKQQSEHTLMDKEEEELLFFFT", "sequence_length": 611, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d87b8ca498a6eedbe57d4f14074f278034aadc9a864e512a2c4e7803061f5e5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q494V2.json", "taxon_id": "9606", "uniprot_accession": "Q494V2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4200-ipr025252.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4200-ipr025252.yaml" } ], "pfam_ids": [ "PF13863" ], "protein_name": "Coiled-coil domain-containing protein 38", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSNLLPTLNSGGKVKDGSTKEDRPYKIFFRDLFLVKENEMAAKETEKFMNRNMKVYQKTTFSSRMKSHSYLSQLAFYPKRSGRSFEKFGPGPAPIPRLIEGSDTKRTVHEFINDQRDRFLLEYALSTKRNTIKKFEKDIAMRERQLKKAEKKLQDDALAFEEFLRENDQRSVDALKMAAQETINKLQMTAELKKASMEVQAVKSEIAKTEFLLREYMKYGFFLLQMSPKHWQIQQALKRAQASKSKANIILPKILAKLSLHSSNKEGILEESGRTAVLSEDASQGRDSQGKPSRSLTRTPEKKKSNLAESFGSEDSLEFLLDDEMDVDLEPALYFKEPEELLQVLRELEEQNLTLFQYSQDVDENLEEVNKREKVIQDKTNSNIEFLLEQEKMLKANCVREEEKAAELQLKSKLFSFGEFNSDAQEILIDSLSKKITQVYKVCIGDAEDDGLNPIQKLVKVESRLVELCDLIESIPKENVEAIERMKQKEWRQKFRDEKMKEKQRHQQERLKAALEKAVAQPKKKLGRRLVFHSKPPSGNKQQLPLVNETKTKSQEEEYFFT", "sequence_length": 563, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1dabb5628950406b12d12b44151072aeb654d328f34cfcb0e529e2130aa94f62", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q502W7.json", "taxon_id": "9606", "uniprot_accession": "Q502W7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4200-ipr025252.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4200-ipr025252.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4200-pf13863.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13863", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4200-pf13863.yaml" } ], "pfam_ids": [ "PF13863" ], "protein_name": "Coiled-coil domain-containing protein 42", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLGMMEEEDLAEYFRLQYGERLLQLLQKFPNVEEQSDSPSIQLLEKKKEAKIMQEAMEHKKEAFQRRMETLNLRWEELGIKEEQLKAHIQKFEQFIQENDQKRIRALKKANKERELKRLRLRELAKAKQEMMALRLEHQKLSVKLQDYAIFNKYLEKVVENSEFEEIHEVIARYKTLVSMHHDLMQSAQEGQEKIERAKARLARYMEEKDDEILQHNNELARLQMRFDRARSDVIFWESRWAHIQNTAAKKTLLLGTIKMATLNLFQIVSKQLKESTQVSLEDTHKQLDMIQQFIQDLSDIWTEVKKKEQQQVRM", "sequence_length": 316, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "62cbf121c0a8cd731a8a12ab455fab2a2ade497c003e839be74593f16020e727", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5SV66.json", "taxon_id": "10090", "uniprot_accession": "Q5SV66", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/axonemal-doublet-microtubule-go0097545.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097545", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/axonemal-doublet-microtubule-go0097545.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4200-ipr025252.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4200-ipr025252.yaml" } ], "pfam_ids": [ "PF13863" ], "protein_name": "Cilia- and flagella-associated protein 100", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFKARSSRFSVKMVEDTGGSQDLINNSFSSFIEEKSKESKKNKGNVTISDRSSNPFHISRDMDYFLLREQEQNQAIAEREQKKILRVHQKMTYASKVSAKHTSLRRELQLEDEMEQQLLNAEAKEMNCFRENNDWKLAMTRERKREPETLNDYMEKRRSMFLLQYALAMKRNEIQRLEMLATREENRLERAEKFLEKDASLFDEFLRENDRNSVQAMRMAEKETKIKTEKIVEIRELTAQITSIKSEISKFEDTLKHYKIYKEFLYKLSPKEWLDEQQEKHLAFKRAKESSELTRNNSTAILFGDKGSGSKSKTAFLWKEVPGLKKVTKTGRLVKALSSSIQSLPQVGQLTQLSPHSELDSRLSSTMFPSQDDTDSDGEELALYFTEPQQLLDVFTKLEEENLSLIQNTQEMEETLDELNVTLKNTQIRMDKEVNLLKQWIASMMISISKEEESAAELELKARVFHFGEYQGDQQDTMLESLNHKVLEVYRKCVGMQQEANLGTVQMLTVVERQLDELLENLERVPQVKIEQAEKAKERERRMRLREEKAMMQKQLQEERLQRARARAQAKIKKKRGRKLISRSHPPVIKVKEVREQTLINKDKEEMLFFFT", "sequence_length": 613, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eb421c0d24d4f43187c0bccd3e483a7b7de33e9229c30e4b6b2354b494db26ae", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q80VN0.json", "taxon_id": "10090", "uniprot_accession": "Q80VN0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4200-ipr025252.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4200-ipr025252.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4200-pf13863.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13863", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4200-pf13863.yaml" } ], "pfam_ids": [ "PF13863" ], "protein_name": "Coiled-coil domain-containing protein 38", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASQMHTSISSGDEGKDAVLKKERPYKIFFKDLFVFKENEIAARKKERMKNHSMKIYQKTTFSSRMKSRSHLGQLAFFADAGSSSYERLGLDPTLILRLTEGADRKRTVHEFINDQRDRFLLEYTVSTKKKTIKRFERLIAIKENQLKKAEKKLQDDALSFEEFLRENDQRSVDALKMAAQETINKLQMTSELKKASMEVQSIKSDIAKTEFLLKEYMKYGFFLLKLSPKQWQIQQSQKRAQSSKSNHILPKILEKFSINTAKGDNSIDSDKMSVSEEWSSRRGSQGGRHGKHTLGQDSRKSSGFTRPESMASEDSLEYFLEDELVEFDLLPEIYFKEPEELLQVFTELEEQNLTLVQYSQDVDENLEDVNKREKFIQDKINNNISFLLEHKHMLRMNCEREEEKAAELELRSRLFSFGEFNSDAQEKLIDSLSKKINQVYRVCIGDAEVGSLNAVQKLVKVESRLVELSDLIESIPREHVEAIERLKQKERRQKLREEKMKEKQRHQEERLKAALERAVAQPKKKLGRRLIYRSKPQSADKQELLLVSDTRSKSQDEEYFFS", "sequence_length": 563, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9ed6aefbf8aeff66321589cc884e3a99020a7b5fa15c58a7508870fe9ae1f0ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CDN8.json", "taxon_id": "10090", "uniprot_accession": "Q8CDN8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4200-ipr025252.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4200-ipr025252.yaml" } ], "pfam_ids": [ "PF13863" ], "protein_name": "Coiled-coil domain-containing protein 42", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLGIMEEEDLAEYFRLQYGERLLQMLQKLPNVEGASESPSIWLLEKKKETEIMHQTMVQKKKMFQRRMETLNLRWEELGVKEAQLKAHIQKSEQFIQENDQKRIRAMKKANKERELKCQHMQELTKRKQEMVALRLEHQRLSAKLKDYYIFNKYLEKVVENSEFEEIHEVIARYKTLVSMRHDLMQSAQEGQEKIERAKARLARYMEEKDDEILQQNNELARLQMRFDRARSNVIFWESRWAHIQNTAAKKTLLLGTIKMATLNLFQIVSKHLKEVTEVALEDTHKQLDMIQQFIQDRSDIWAEVKKKEQQRVRI", "sequence_length": 316, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a3a72ff839db40e8a5e2843a7aa124aa9df99eacfa1e63b8319ca1b96f609d9a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96M95.json", "taxon_id": "9606", "uniprot_accession": "Q96M95", "uniprot_release": "2026_03" } ], "pfam_id": "PF13863", "short_name": "DUF4200", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Tetrahymena thermophila (strain SB210)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cap-like-cfap184-pf23448.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23448", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cap-like-cfap184-pf23448.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm-like-cfap184-pf23449.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23449", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm-like-cfap184-pf23449.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccdc113-ccdc96-cc-pf13870.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13870", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccdc113-ccdc96-cc-pf13870.yaml" } ], "pfam_ids": [ "PF13870", "PF23448", "PF23449" ], "protein_name": "Cilia- and flagella-associated protein 184", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASEDGEMPSQFEGIDPEQLTESQMQQYMMEMQRQGLLDSNMEGGQYEEGYEEGQEGEGYGEEYGDQDYDGNQNEYDSQQDSQQQGHDQVNEMHQDRYDRRVNSEISGNYEADDETLRKIRRDLLDNINLERRHRDLQPVYIDLTTNNISQYYSEYLVNNEHNQDFYENAKVRYNNLGECELCHITAKFEPDADITKEYIYDYFMEIGYLFLESEEEKRIILNPANNHIGIGVFFDEIQIVVVLILSEKVLCIQKISQPEQNKIEIRGKMLDENFGIYAIRIMNVDDQKKDIKGVGPEFIEYTRSTQEWMASFELELYNQDRMAIEYYTRVSPDSIPYKKKQSKNEKLTYKHLQLRLRTPFQIYPDPKYAAEDEKERIRKEQEILAHEEQERKEREENDAKRLKQSRKDYGDGQYDDDEHGQDDFNSQSDISDKDKHHDSMHAEQEQNQQAAQQQQDTISNKEIRQELEMAITEAQRQHDEFMLQNHKLQEEIKLLKNKNDGFVDRSNETAMNEHKYLNTLAHVHQIRLDLKQTQTRYNQMSQELQKKLEQKQKKCNEIKYAFLELKREVAKKAANSRTDKPIPEQQINEWEKAELQKSKELQELRLQILRLRNAYVKNQKILKKKEELAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLKKKNTTTIQILTHTREKLGFVQGENGELNSQNVRKDQELDDMRKQLTQQKKTKDKLRSVNLTLKQQTGIVNSEELGQDYRDLRTRVSKLEEEKKRLEQKLRSMHEAIKTANQISTQNMQSQNNSLKKPYQPY", "sequence_length": 794, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "16f7831a16249333cc99fa912ef8960266e520cfdce124ea2d18c680c051e557", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/I7M6D6.json", "taxon_id": "312017", "uniprot_accession": "I7M6D6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccdc113-ccdc96-coiled-coil-ipr025254.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccdc113-ccdc96-coiled-coil-ipr025254.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccdc113-ccdc96-cc-pf13870.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13870", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccdc113-ccdc96-cc-pf13870.yaml" } ], "pfam_ids": [ "PF13870" ], "protein_name": "Cilia- and flagella-associated protein 184", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVSSEHTKDPGGEGGDGESLAARPSKIKASSGPPTSPEPGELESEPEEEEEEQAASQGGTAADEQAEAPKGLTAAEAAGEEGPGEPGRPAEPQPEPEEPAEVGAEEPAQPEPGAGPEELEAEAGAEELEQAAEGKEVRFQASLPLTRIDEEEAAAAPEAETERVEGEEEDKEETQRDGAESKERDGEGRPAKSQEEGKRLYGRDEFEDLEWSEEVQKLQEQQLRSDLLDQYRSLLVERNRSQRYNLYLQHKIFEALRRKKGLEAAEVADRGAEAEAPEKEQAYLRHLGMLEELKKQQADDLQWYHQELGQLKRQCQEKLTRVEKEWRRFQALKKQVVMQAMGSCRMRGGRQAALREVEQIQALEDKKEKEMSAVRLENIQLKQSLVHFETRMRTQEDLTQGLLLIDFEQLKIENQTFNEKIEERNEELLKLRSKVTNSVQVITHVKEKLHFMDMENACKKTQLAEIEAQAALGRDILTKTKQAREGLRTDNIRLNQKCGLLGKDSLLRDLEEKVDKTELLHRRLESLKRHHASLTLSCRGVRQKIREAKAFLPS", "sequence_length": 555, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b281508e9a86895e8f2eeb66d949e6965748b8e8feaaf9f6a7c7e1d80c4a3251", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q2M329.json", "taxon_id": "9606", "uniprot_accession": "Q2M329", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccdc113-ccdc96-coiled-coil-ipr025254.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccdc113-ccdc96-coiled-coil-ipr025254.yaml" } ], "pfam_ids": [ "PF13870" ], "protein_name": "Cilia- and flagella-associated protein 263", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEEDSDSVITDSQAEEEGELPVIQLCGLVEELSYGNSALKTETEMFEKYYSRLEPRDHRMTRLSDIKITAAEFSQLRSRRKSKARGGLDRTLGLTVEQKLELVQKELEDTRDEIRHMRANAERDLQHHEAIIEEADIRWNEVQKAVHEFEKDILKTISKKKGSILATQKVMKYIEDMNRRRDNIKDKLCLKNVSLKVQRKKMLSQLRQKEEVGEALHDVDFQQLKIENAQFLETIEARNKELIQLKLASGNTLQVLNTYKNKLHRAMEIYVNLDKEILLRNELLGKIEKETIQAEEDRAKAHILNDKLRKQLAEFRAPQVMMYVKEKILNGELEKTIKMWERKVEIAEMSLKGYRKAWNKMKTSDEQLQIIRPPGK", "sequence_length": 377, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "af8b4157464a27827a9dfd1d885c5b3dbf991316f4921499a249772ee35e50da", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C5T8.json", "taxon_id": "10090", "uniprot_accession": "Q8C5T8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccdc113-ccdc96-coiled-coil-ipr025254.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccdc113-ccdc96-coiled-coil-ipr025254.yaml" } ], "pfam_ids": [ "PF13870" ], "protein_name": "Cilia- and flagella-associated protein 184", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSHYGDIEGKDRAEEGLARQSLEIKVSSEPLTPANPVEQEPEPKPEPEPTQGREPESETQPVSDSSKAKDSEGIDYAHVEVPESPGAAETAGEAVSREPESLPQTQPKTKPESKEPEDKDEDEDEDEDEDEDEDEDEDEDEDEGEERDRPEKPKGKGKREKRKESRFRPSLPLTTIVEEGAAPGPQAAKEKARESLKKRDSEEIEGTDRERHKSTEEQLHPGEAKEEEKQKGASTEEFEWTADMQKLQEQQLRGELVEQYHSLLVERNRYQRYNMYLQQKIHETLRKKGLEAAAEPGDKSAEPESPEKEQAYLRYLAMLEELKKQEADDLEWYRQEVRELKQQCQEKQTRVEKEWRRFQALKKQVVMQVMGSCRTRGGRQAALREVEQLQALEDKKEKEMSAVRLENVQLKQSLVHFETRMKAQEDLAEGLLLIDFEQLKIENQTFNEKVEERNEELLKLRTKVTSNVQIITHVKEKLSFIDTENSCKKAQLSEVDAQVALGRDLLTKTKQARDSLRIDNVKLSQKCGLLGKESLLRDLEEKVEKTEMLNRRLESLKRHHAGLALSCKGVKQKIREAKTFLPS", "sequence_length": 584, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "106ec5fe6161bb3609e4568056cf4f483165bb83a23839b6dc14c8c108357e12", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CR92.json", "taxon_id": "10090", "uniprot_accession": "Q9CR92", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccdc113-ccdc96-coiled-coil-ipr025254.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccdc113-ccdc96-coiled-coil-ipr025254.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccdc113-ccdc96-cc-pf13870.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13870", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccdc113-ccdc96-cc-pf13870.yaml" } ], "pfam_ids": [ "PF13870" ], "protein_name": "Cilia- and flagella-associated protein 263", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDDESESVLSDSHEGSELELPVIQLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQRPPRLSEIKISAADYAQFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRANAERDLQHHEAIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNRRRDNMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARNQELTQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRAKAEAVNKRLRKQLAEFRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWNRMKITNEQLQADYLAGK", "sequence_length": 377, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6dd1f5fda94c9f0c44c4b6af347956a4cebcb8740b75dbf929ab3fc3926d6d39", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H0I3.json", "taxon_id": "9606", "uniprot_accession": "Q9H0I3", "uniprot_release": "2026_03" } ], "pfam_id": "PF13870", "short_name": "CCDC113_CCDC96_CC", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13875", "short_name": "DUF4202", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-tm7sf3-2nd-pf27919.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27919", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-tm7sf3-2nd-pf27919.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-tm7sf3-n-pf25992.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25992", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-tm7sf3-n-pf25992.yaml" } ], "pfam_ids": [ "PF13886", "PF25992", "PF27919" ], "protein_name": "Transmembrane 7 superfamily member 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWRLRLLVLAVLAAGSAEAQANSSDGFLEFSVGKFTYFVLSRRFPQEAVLRHISSNVTFLLFQIHSQYQNTTVSYTKTLLPSTSGTGNDRGLVFILRPEQTVCTWYLETEDTKPVQSVAVTLSYSERDPIPGGCNLEFDLDIDPNIYLDYNFFETTIKFAPANIGYARAAEPPPCDVSTGQESRWRLRYHVYQYFLPEGDLTEASLLQHLQRMAQVVQVMASAVKVVTLTADDKTVVSFSSLPGQGVIYNVIVWDPSLNTSAAYVPVHTYACSFDSVDGNCVPPGRVSTKVFSTLFALLGLFTCFFGHRFWKTELFFVGFIFLGFFFYILITRLTALKYEVRLVLTAVAGSIGGLLLVASWWRFGILTLCMLCVGLVLGFLVSSGTFFTPLGNLNVFHDDGVFWVTFSCIALLVPVIFLGCLRILNILACGIVGSYSVVLAINSYMFTSLSYITLNVLRRALNADFRGAFIRVPFQTNDYIILAVWGMLAVTGITLQIRRERGRPPFPPHPYKLWKQERERRVTNILDPSHHIPPLRERLYGWVARIKELFQKEQPAGERTPLLL", "sequence_length": 565, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b3ff88fc08364d3985bcf654c24ef389294efdbd547c9b2c91fec086ee06d240", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5FVF4.json", "taxon_id": "10116", "uniprot_accession": "Q5FVF4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tm7s3-tm198-like-domain-ipr025256.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025256", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tm7s3-tm198-like-domain-ipr025256.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tm7s3-tm198-pf13886.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13886", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tm7s3-tm198-pf13886.yaml" } ], "pfam_ids": [ "PF13886" ], "protein_name": "Transmembrane protein 198", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGTVATLRFQLLPPEPDDAFWGAPCEQPLERRYQALPALVCIMCCLFGVVYCFFGYRCFKAVLFLTGLLFGSVVIFLLCYRERVLETQLSAGASAGIALGIGLLCGLVAMLVRSVGLFLVGLLLGLLLAAAALLGSAPYYQPGSVWGPLGLLLGGGLLCALLTLRWPRPLTTLATAVTGAALIATAADYFAELLLLGRYVVERLRAAPVPPLCWRSWALLALWPLLSLMGVLVQWRVTAEGDSHTEVVISRQRRRVQLMRIRQQEDRKEKRRKKRPPRAPLRGPRAPPRPGPPDPAYRRRPVPIKRFNGDVLSPSYIQSFRDRQTGSSLSSFMASPTDADYEYGSRGPLTACSGPPVRV", "sequence_length": 360, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9e36f7a376512665b406d5863926530e9889aa4dd1cd73c61be054d53fa24fa3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q66K66.json", "taxon_id": "9606", "uniprot_accession": "Q66K66", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tm7s3-tm198-like-domain-ipr025256.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025256", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tm7s3-tm198-like-domain-ipr025256.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tm7s3-tm198-pf13886.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13886", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tm7s3-tm198-pf13886.yaml" } ], "pfam_ids": [ "PF13886" ], "protein_name": "Transmembrane protein 198", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGTMETLRFQLLPPEPDDTFWGAPCEQPLERRYQALPALVCIMCCLFGVVYCFFGYRCFKAVLFLTGLLFGSVVIFLLCYRERVLETQLSAGASAGIALGIGLLCGLVAMLVRSVGLFLVGLLLGLLLAAAALLGSAPYYQPGSVWGPLGLLLGGGLLCALLTLRWPRPLTTLATAVTGAALIATAADYFAELLLLGRYVVERLRAAPVPPLCWRSWALLALWPLLSLMGVLVQWRVTTERDSHTEVVISRQRRRVQLMRIRQQEERKEKRRKKRPPRAPPRGPRAPPRPGPPDPAYRRRPVPIKRFNGDVLSPSYIQSFRDRQTGSSLSSFMASPTDTDYEYGSRGPLTACSGPPVRV", "sequence_length": 360, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5a96ed263d6c6524ce09ea015f2fe610ef77e77d783c9e6aae1c6d88a52ff923", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BG75.json", "taxon_id": "10090", "uniprot_accession": "Q8BG75", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tm7s3-tm198-like-domain-ipr025256.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025256", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tm7s3-tm198-like-domain-ipr025256.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tm7sf3-like-n-terminal-immunoglobulin-like-domain-ipr059229.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR059229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tm7sf3-like-n-terminal-immunoglobulin-like-domain-ipr059229.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-tm7sf3-2nd-pf27919.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27919", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-tm7sf3-2nd-pf27919.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-tm7sf3-n-pf25992.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25992", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-tm7sf3-n-pf25992.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tm7s3-tm198-pf13886.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13886", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tm7s3-tm198-pf13886.yaml" } ], "pfam_ids": [ "PF13886", "PF25992", "PF27919" ], "protein_name": "Transmembrane 7 superfamily member 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWRLRLLVLAVLAAGSAEAQANSSDGFLEFSVGKFTYFVLSKSSPQEAVLRHISSNVTFLLFQIHSQYQNTTVSFTKTLLPSTSGTGNDRGLVFILRPEQAVCTWYLETGDTKPVQSVALTLSYSERDPIPGGCNLEFDLDIDPNLYLDYNFFETTIKFAPANIGYARATEPPPCDVSTSRESRWRLRYDVYQYFLPEGDLTEASLLHHLQRMAQVAQVKASAIKVATLTADDKTAVSFSSLPGQGVIYNVIVWDPSLNTSAAYVPVHTYACSFESVDGNCASPGRVSTKVFSTLFALLGLFVCFFGHRFWKTDLFFVGFIFLGFFFYILITRLTPLQYDVRLALTAVAGSFGGLLLVASWWRFGILTLCMLCVGLVLGFLVSSGTFFTPLGNLNVFHDDGVFWVTFSCIALLVPVIFMGCLRILNILACGVVGSYSVVLAVNSYMFTSLSYITLNVLRRALNTDFRGAFIRVPFQTNDYIILAVWGMLAVSGITLQIRRERGQPPFPPHPYKLWKQERERRVTNILDPSHHIPPLRERLYGRVARIKELFQKEQPAGERTPLLL", "sequence_length": 565, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "62e8454828e42a906c2d7a44917f0507f6cf16ec943e3d65a7cd9bd8b1a2b5e6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CRG1.json", "taxon_id": "10090", "uniprot_accession": "Q9CRG1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tm7s3-tm198-like-domain-ipr025256.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025256", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tm7s3-tm198-like-domain-ipr025256.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tm7sf3-like-n-terminal-immunoglobulin-like-domain-ipr059229.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR059229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tm7sf3-like-n-terminal-immunoglobulin-like-domain-ipr059229.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-tm7sf3-2nd-pf27919.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27919", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-tm7sf3-2nd-pf27919.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-tm7sf3-n-pf25992.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25992", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-tm7sf3-n-pf25992.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tm7s3-tm198-pf13886.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13886", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tm7s3-tm198-pf13886.yaml" } ], "pfam_ids": [ "PF13886", "PF25992", "PF27919" ], "protein_name": "Transmembrane 7 superfamily member 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFLQLLVVAVLASEHRVAGAAEVFGNSSEGLIEFSVGKFRYFELNRPFPEEAILHDISSNVTFLIFQIHSQYQNTTVSFSPTLLSNSSETGTASGLVFILRPEQSTCTWYLGTSGIQPVQNMAILLSYSERDPVPGGCNLEFDLDIDPNIYLEYNFFETTIKFAPANLGYARGVDPPPCDAGTDQDSRWRLQYDVYQYFLPENDLTEEMLLKHLQRMVSVPQVKASALKVVTLTANDKTSVSFSSLPGQGVIYNVIVWDPFLNTSAAYIPAHTYACSFEAGEGSCASLGRVSSKVFFTLFALLGFFICFFGHRFWKTELFFIGFIIMGFFFYILITRLTPIKYDVNLILTAVTGSVGGMFLVAVWWRFGILSICMLCVGLVLGFLISSVTFFTPLGNLKIFHDDGVFWVTFSCIAILIPVVFMGCLRILNILTCGVIGSYSVVLAIDSYWSTSLSYITLNVLKRALNKDFHRAFTNVPFQTNDFIILAVWGMLAVSGITLQIRRERGRPFFPPHPYKLWKQERERRVTNILDPSYHIPPLRERLYGRLTQIKGLFQKEQPAGERTPLLL", "sequence_length": 570, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "01670dc46fcf157854eefb0f3d7734540decf65b9df938c67ca51288015e535c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NS93.json", "taxon_id": "9606", "uniprot_accession": "Q9NS93", "uniprot_release": "2026_03" } ], "pfam_id": "PF13886", "short_name": "TM7S3_TM198", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-conserved-domain-ipr025261.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025261", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-conserved-domain-ipr025261.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4210-pf13915.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13915", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4210-pf13915.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chromosome-seg-pf13889.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13889", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chromosome-seg-pf13889.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q32MH5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF13889", "PF13915" ], "protein_name": "Atos homolog protein A", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "27be8b0c335bf10426738cb0267b5a01c1207dfc1e98870794232049aeefddb7", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKPDRDTLDEYFEYDAEEFLVSLALLITEGRTPECSVKGRTESFHCPPAQSCYPVTTKHECSDKLAQCRQARRTRSEVTLLWKNNLPIMVEMMLLPDCCYSDDGPTTEGIDLNDPAIKQDALLLERWILEPVPRQNGDRFIEEKTLLLAVRSFVFFSQLSAWLSVSHGAIPRNILYRISAADVDLQWNFSQTPIEHVFPVPNVSHNVALKVSVQSLPRQSNYPVLTCSIHTNIGLYEKRIQQHKLKTHQHHNPNEAEQCGTNSSQRLCSKQTWTMAPESVLHAKSGPSPEYTAAVKNIKLYPGTGSKSDHGTSQANILGFSGIGDIKSQETSVRTLKSFSMVDSSISNRQSFWQSAGETNPLIGSLIQERQEIIARIAQHLIHCDPSTSHVSGRPFNTQESSSLHSKLFRVSQENENVGKGKEAFSMTFGSPEFSSPEDTNEGKIRLKPETPRSETCISNDFYSHMPVGETNPLIGSLLQERQDVIARIAQHLEHIDPTASHIPRQSFNMHDSSSVASKVFRSSYEDKNLLKKNKDESSVSISHTKCSLLGDISDGKNLVPNKCFTSFKNNSKEKCSLKHQTRNQCQNNPSEIIQSTYQETQNKSSSLSTSSILSQHKENNLDLTSRFKEQEMSNGIDKQYSNCTTIDKQICTNKYKEKIINENYNPKFFGNLQSDDSKKNDSKIKVTVLEMSEYLNKYESMSSNKDSKRPKTCEQNTQLNSIENYLNKDNEGFKCKKSDQLKNEQDKQEDPTNEKSQNYSQRRSIKDCLSTCEQPKNTEVLRTTLKHSNVWRKHNFHSLDGTSTRAFHPQTGLPLLSSPVPQRKTQSGCFDLDSSLLHLKSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLLGNFEESVLNYRFDPLGIVDGFTAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPPSGTIQVTLFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVKQEVKRSVNKENIRHTEERLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYELKSYTESPTNPQFSPRC", "sequence_length": 1076, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "27be8b0c335bf10426738cb0267b5a01c1207dfc1e98870794232049aeefddb7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q32MH5.json", "taxon_id": "9606", "uniprot_accession": "Q32MH5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-conserved-domain-ipr025261.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025261", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-conserved-domain-ipr025261.yaml" } ], "pfam_ids": [ "PF13889", "PF13915" ], "protein_name": "Atos homolog protein A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKPDRDALDEYFEYDAEEFLVSLALLITEGRTPECSVKGRAESFHCPPAQSRFPGTARHECSDKLAQCRQARRTRSEVTLLWKNNLPIMVEVMLLPDCCYSDEGPSTEGADLNDPAIKQDALLLERWILEPVPRQNGDRFIEEKALLLAVRSFVFFSQLSAWLSVSHGAIPRNILYRISAADVDLQWSFSQTPTEHVFPVPNVSHNVALKVSVQSLPRQAHYPVLTCSIHTNIGLYEKRIQEQELRACQHHGPGEVEYRCPSSSQSLCSKHTWTMAPVSALHVRSGMPPEYTAAIRNVRLCPGTGSKSDQGAPQASVLGFSGTGGEVRSQEASVRTFKSLPVVDSSVSSCQSSRQPVGEPNPLMDSLIQDRQEVIARIAQHLIHCDPSSSRMSELPFNTQESTSLSPKLHPVSQESGCVRRYKEAFSVSFGSPEFGSPGDSREGKVREKSETRPGETCTSHSLYPRQPAGEANPLIGSLLQERQDVIARIAQHLEHIDPAAHIPRPAFSKHDSNSIPSKVFRSSFDDKTLLKKGRENVSVSVSHTEVSLLGDRGDGESLKPSKCLRSFKYSPQEKPLKPEVRTQHQNHPDSITPTARQELLNKAAGLLTSSNTALCKESSLGLVSRLESTSCKLQLKEQEMSHETEKQCLHCNSIDKQICTNTCTEKINDEHSPGSLRHLQCDDSKGIDSKLKVTLLEMPDSLNKNKTNCSSKDSKRSKTCEQSIRVGTENDLSEENEGPGSTVSDRLKTEQEAKRDSGAGKPHSVKHCLSAGERLHSADMLRTTLKHSSVWRKHNFHSLDGTSTRAFHPQTGLPLLSSPVPQRKTQSGCFDLDASLLHLRSLSSKSSRPCLNIDEDPDVHEKPFLSSSAPPITSLSLLGNFEESVLNYRLDPLGIVDGFTAEVGASGTFCPTHLTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPPSGTIQVTLFNPNKTVVKMFVVVYDLRGMPANHQTFLRQRTFSVPVKQEMKRSINKENVQHTAQLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYELKSYTESPTNPQFSPRC", "sequence_length": 1075, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c8580e5f0643ced6666f7b7c13398c8d1912d46d91f484728eba68df14367f37", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q69ZK7.json", "taxon_id": "10090", "uniprot_accession": "Q69ZK7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4210-pf13915.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chromosome-seg-pf13889.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13889", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chromosome-seg-pf13889.yaml" } ], "pfam_ids": [ "PF13889", "PF13915" ], "protein_name": "Protein Atossa", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIPTSVTNSPPPAGLGQNGASASLGSATAAAGGGMLSGLGMVAVSGCGSAGTGAQNNYGSVVLGLASLILEGRPIADDEYQQQTVGVVGSGAATAGSGGGRLSPRPSTSRAAINITTNPYGSMGGSENRAVNGSGSTGSPSSSSLTHQRWTQKLCQLRQISPAAQTMSAEPELVSLAINDLNKDHGDYEIVRRVMLNRAGGTGLVSSAGGGTNNSSAASSPGSNSSDNILHSLQSLATTCLRGGPALAPPPSVESRPLNLAFHWSGLGGSGGRGLGFGGGAASISNTPTTTATATASSGASSSASRPKHGPHCDQFLRKMGLAKGEMPSEAEEHICDMSYVNMTCNRWRAYCMKMEAILARREPVCIEVYLGPVSHKLLLEQWIICGREKVPPPTMTLPSLCSAIRSQLYFSQIVAWCDLLRKCDPSVYDSGRVIFSNCGNNAGDLATSYTTCGGQKRPRLNIFYRIKQHTTTNSNSGLHQEDGFSAKANVHNFPNVNVSESYSISVSVRSLPRINGGLPHVEPLPPSPAPRSLRPCGGDPASTPTGGGGLHAATPTGLGARTSALTPTTTAGGSNCDNGKPGMGQILDELDGDTSLSHRERQLQKYRKRMQRRDKKRERKATPDRLNSRQQSEEPMDEGEESQTQSQTTSETQSLALTLQQPRRIAMISTGTQTSLSSCQQCGSEKTLLCLSCTGGGGAHGGSNGTANGSTNGATDDGDDSDTTASEMEETSSCSLSSADLIVGTPRNNAELLLQAIQRTPKNRNRKPHPGVLDQVSCRNADLNGGQNNNLLKATPATSGCQVCKRQKTQHNFANGKVHQPTNGKQASNGYASMHLEAEKQPDVVQILATKLTPNIERCSLNPVERCKTPPPGVADHIVVQFKTPLSQVPAKHQPDAMVPLQQQQLGKSSSKPAQLRLNCGSNLLESETPPPMTSPQMRKALPKVNLTTIFCSSAPIAIGCPAFSFDPAALSHARSQLLAPDVSVTPPVQKSFSAPTLPHAASLSVSPRFSKQALAAHKRRSRHLSDRSDRSSLGSDEQLSDEDLESGLCSPAGGSPLKCRARLAAQFGGRPLLGNLEESLLQRRLMPKIEVMGFTLQLGASGGFCPTQVNIPAVSYFYELHGETLSTPYLCEIRLPRKGYSVPRSGTVQATLLNPIGTVVRMFVIPYDMRDMPPLHRTFIRQRILAEELSQDQDEGHKVPRSPTVTSTTSKLGHFISAEQMKRLRYSIHLKFQTSRSGRLCLHTDIRLLISRRTDCDTAAAHAKGVLEAPNELVTDTMMPAEPRYSARQESAGRI", 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"commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-conserved-domain-ipr025261.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025261", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-conserved-domain-ipr025261.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4210-pf13915.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13915", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4210-pf13915.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chromosome-seg-pf13889.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13889", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chromosome-seg-pf13889.yaml" } ], "pfam_ids": [ "PF13889", "PF13915" ], "protein_name": "Atos homolog protein B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRHVQAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIVDLNPLGRKGYSVPKVGTVQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVGEEGNANPTHRLLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYELQAVTEAPHNPRYSPLP", "sequence_length": 538, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "114f51a46d21d98c943ca0cef95252ffec90d07fc672be390702641e2df0cb57", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7L5A3.json", "taxon_id": "9606", "uniprot_accession": "Q7L5A3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-conserved-domain-ipr025261.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025261", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-conserved-domain-ipr025261.yaml" } ], "pfam_ids": [ "PF13889", "PF13915" ], "protein_name": "Atos homolog protein B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRHVQAELSPSSEPEAGPSQPPVRQGTLQGGLLMGYSPAGGATSPGVYQVSIFSPSAGASEPPRALKRPAPPTEGPRELKRGPGLGAREGLPPEEPSTVGLLSPEGLGLGLGVASQHFSHHGLCVVEHGGNTTSPWTSGTQSTPWLSSNASFNTLHTRDWAFPDQGGQGCLGETPGPAPSGQLHTLDTDLHNLAQIGGKSPVARVGNGSNPWPRESHGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGETLDVSSEDEGPAPRRRRGTLGCPLAANSSDAKATPFWSHLLPGPKEPVLDPTDCSPMGRRLKGARRLKLSSLRTLRKGPGLLSPPSASPFPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGVVDLTPLGRKGYSVPKVGTIQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVGEEGNASPTHRLLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYELQAVTEAPHNPRYSPLP", "sequence_length": 538, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "016be08e3dc0a42d7eba4cd064eef034ebf61923e2eedf9b3716653037887d0a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BR27.json", "taxon_id": "10090", "uniprot_accession": "Q8BR27", "uniprot_release": "2026_03" } ], "pfam_id": "PF13889", "short_name": "Chromosome_seg", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dimer-mindy4-n-pf26038.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26038", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dimer-mindy4-n-pf26038.yaml" } ], "pfam_ids": [ "PF13898", "PF26038" ], "protein_name": "Probable ubiquitin carboxyl-terminal hydrolase MINDY-4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTLFVEEVAASLIREFLSRKGLKKTYVTMDQERPRSDLSINSRNDLRKVLHLEFLYKENKAKENPLKTNLELITRYFLDHFGNIGNNVTQETRIPELSVPKKSNKLPLRSSETTLVNIYHLADEDETWRTSLSEISKARHDSLDGDVLGHFVSSKRSSHKSRPIKTVAGESPTVASAWEKTDKLPMSEPSLDTKRMGEKVRPKSGLIVRGMMAGPIASSPQDSLRKRSLRRSPALSSATQPHKEGSPQEPELSTHTSTCPTPLEGPASSTASTSRSPQGPLSELTWEKQRTSPGSPPHLPGKGLLPRGSGRWRDLSEDSPAVDSGSEAIRTPPKFSLSSGNVPKTQERPERAFERQGSQPASLRKNQLSVSNKLEGDLDVLQLEDVEDELVREEIILSPVSSVLKLQVVSKPIDLSVAKDIKTILFGSSFCCFSDEWKLQSFSFNDSVSLKYGIVQNKGGPCGVLAAVQGCVLQKLLFEGDSSADCARLQPSNARRTHCLALAIADIVWRAGGCERAVVTLASGTQHFSPTGKYKADGVLETLILHSLTCYEELVTFLQQSIHQFEAGPYGCVLLTLSAILSRSTELVRQDFDVPTSHLIGAHGYCTQELVNLLLTGKAVSNVFNDVVELDSGNGDVTLLKGISTRSDIGFLSLFEHYNVCQVGCFLKTPRFPIWVVCSESHFSVLFSQQLELLRDWRAERLFDLYYYDGLANQQEQIRLTVDTTQTVPEDRDNGLVPPLELCNRTKWKGASVNWNGSEPIL", "sequence_length": 763, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "30bf08f941a5e830f5e298154e54d13898972b66ccb8e6e204ffe62216d04c20", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1A4L4.json", "taxon_id": "9913", "uniprot_accession": "A1A4L4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/deubiquitinating-enzyme-mindy-3-4-conserved-domain-ipr025257.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/deubiquitinating-enzyme-mindy-3-4-conserved-domain-ipr025257.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mindy-3-4-cd-pf13898.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mindy-3-4-cd-pf13898.yaml" } ], "pfam_ids": [ "PF13898" ], "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase MINDY-4B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDMEVLGQEQSSEQLDLEEISRKISFLDKWREIFSYHRLGTNNSTPQNHEGNHTSADENEDGTGLSQPKGQGHLPSSGLCSIPNPSIISSKLGGFPISLAMATKLRQILFGNTVHVFSYNWKKAYFRFHDPSSELAFTLEVGKGGARSIQMAVQGSIIKYLLFTRKGKDCNLGNLCEISKKEQEQALAAALAGILWAAGAAQKATICLVTEDIYVASTPDYSVDNFTERLQLFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLIFSRTFERLQMDLDVTTTQLLQPNAGGFLCRQAVLNMILTGRASPNVFNGCEEGKSQETLHGVLTRSDVGYLQWGKDASEDDRLSQVGSMLKTPKLPIWLCNINGNYSILFCTNRQLLSDWKMERLFDLYFYSGQPSQKKLVRLTIDTHSHHWERDQQEEKHGPRRRFSPVEMAIRTKWSEATINWNGTVPFF", "sequence_length": 460, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7701c1309b66c213b13db28b3337b807c95f22da45557333053633d3785338ad", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/A8MYZ0.json", "taxon_id": "9606", "uniprot_accession": "A8MYZ0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/deubiquitinating-enzyme-mindy-3-4-conserved-domain-ipr025257.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/deubiquitinating-enzyme-mindy-3-4-conserved-domain-ipr025257.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mindy4-n-terminal-dimerisation-domain-ipr059022.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR059022", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mindy4-n-terminal-dimerisation-domain-ipr059022.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dimer-mindy4-n-pf26038.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26038", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dimer-mindy4-n-pf26038.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mindy-3-4-cd-pf13898.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mindy-3-4-cd-pf13898.yaml" } ], "pfam_ids": [ "PF13898", "PF26038" ], "protein_name": "Probable ubiquitin carboxyl-terminal hydrolase 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"source_url": "https://rest.uniprot.org/uniprotkb/Q3UQI9.json", "taxon_id": "10090", "uniprot_accession": "Q3UQI9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/deubiquitinating-enzyme-mindy-3-4-conserved-domain-ipr025257.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/deubiquitinating-enzyme-mindy-3-4-conserved-domain-ipr025257.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mindy4-n-terminal-dimerisation-domain-ipr059022.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR059022", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mindy4-n-terminal-dimerisation-domain-ipr059022.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dimer-mindy4-n-pf26038.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26038", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dimer-mindy4-n-pf26038.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mindy-3-4-cd-pf13898.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mindy-3-4-cd-pf13898.yaml" } ], "pfam_ids": [ "PF13898", "PF26038" ], "protein_name": "Probable ubiquitin carboxyl-terminal hydrolase MINDY-4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSLFVEEVAASLVREFLSRKGLKKTCVTMDQERPRSDLSINNRNDLRKVLHLEFLYKENKAKENPLKTSLELITRYFLDHFGNTANNFTQDTPIPALSVPKKNNKVPSRCSETTLVNIYDLSDEDAGWRTSLSETSKARHDNLDGDVLGNFVSSKRPPHKSKPMQTVPGETPVLTSAWEKIDKLHSEPSLDVKRMGENSRPKSGLIVRGMMSGPIASSPQDSFHRHYLRRSSPSSSSTQPQEESRKVPELFVCTQQDILASSNSSPSRTSLGQLSELTVERQKTTASSPPHLPSKRLPPWDRARPRDPSEDTPAVDGSTDTDRMPLKLYLPGGNSRMTQERLERAFKRQGSQPAPVRKNQLLPSDKVDGELGALRLEDVEDELIREEVILSPVPSVLKLQTASKPIDLSVAKEIKTLLFGSSFCCFNEEWKLQSFSFSNTASLKYGIVQNKGGPCGVLAAVQGCVLQKLLFEGDSKADCAQGLQPSDAHRTRCLVLALADIVWRAGGRERAVVALASRTQQFSPTGKYKADGVLETLTLHSLTCYEDLVTFLQQSIHQFEVGPYGCILLTLSAILSRSTELIRQDFDVPTSHLIGAHGYCTQELVNLLLTGKAVSNVFNDVVELDSGDGNITLLRGIAARSDIGFLSLFEHYNMCQVGCFLKTPRFPIWVVCSESHFSILFSLQPGLLRDWRTERLFDLYYYDGLANQQEQIRLTIDTTQTISEDTDNDLVPPLELCIRTKWKGASVNWNGSDPIL", "sequence_length": 757, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "73ab3632d2c947a2f5cd6e6dbc9bb04c59ef74383f495863434ca71a29751e0a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q4G0A6.json", "taxon_id": "9606", "uniprot_accession": "Q4G0A6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/deubiquitinating-enzyme-mindy-3-4-conserved-domain-ipr025257.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/deubiquitinating-enzyme-mindy-3-4-conserved-domain-ipr025257.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mindy-3-4-cd-pf13898.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mindy-3-4-cd-pf13898.yaml" } ], "pfam_ids": [ "PF13898" ], "protein_name": "Ubiquitin carboxyl-terminal hydrolase MINDY-3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEVTKELLELVWGTKSSPGLSDTIFCRWTQGFVFSESEGSALEQFEGGPCAVIAPVQAFLLKKLLFSSEKSSWRDCSEEEQKELLCHTLCDIVESAYDSSGSYCLVSWLRGRTPEEAARISGSPAQSSCQVEHSSALAVEELGFERFHALIQKRSFRTVSELKDAVLDQYSMWGNKFGVLLFLYSVLLTKGIENIKNSIEDANEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMQLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNGFIADSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRCPSLN", "sequence_length": 444, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "08237cb05dfcd53617bb8d967241e04c53b7cb3d60d30204ea64a135a906f683", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CV28.json", "taxon_id": "10090", "uniprot_accession": "Q9CV28", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/deubiquitinating-enzyme-mindy-3-4-conserved-domain-ipr025257.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/deubiquitinating-enzyme-mindy-3-4-conserved-domain-ipr025257.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mindy-3-4-cd-pf13898.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mindy-3-4-cd-pf13898.yaml" } ], "pfam_ids": [ "PF13898" ], "protein_name": "Ubiquitin carboxyl-terminal hydrolase MINDY-3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSELTKELMELVWGTKSSPGLSDTIFCRWTQGFVFSESEGSALEQFEGGPCAVIAPVQAFLLKKLLFSSEKSSWRDCSEEEQKELLCHTLCDILESACCDHSGSYCLVSWLRGKTTEETASISGSPAESSCQVEHSSALAVEELGFERFHALIQKRSFRSLPELKDAVLDQYSMWGNKFGVLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMKLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNGFIPDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRSPSLN", "sequence_length": 445, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ac1c44979511ceb48f79e6cda6aa954a258e71c654ee6afe5c7df36527cf2851", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H8M7.json", "taxon_id": "9606", "uniprot_accession": "Q9H8M7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/deubiquitinating-enzyme-mindy-3-4-conserved-domain-ipr025257.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/deubiquitinating-enzyme-mindy-3-4-conserved-domain-ipr025257.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mindy-3-4-cd-pf13898.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mindy-3-4-cd-pf13898.yaml" } ], "pfam_ids": [ "PF13898" ], "protein_name": "Ubiquitin carboxyl-terminal hydrolase MINDY-3 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNEKIVREQRGGEDSPSSVSAKSATAAASASTASMTFASAALESHKTTTITTASSSPRTSGASASASSSSRSASAPASSSSQQEKQPMLNATDMRELREIKQLLWGDNVREDVFKRWSQGFEFSKVEPSALVQKQGGPCAVIAPVQAYLLKIIIMDLPGIKLSEISLDKSQNLLIQALCDILKNCRAPRYRIVHLLRRRGNATEAGSTKKRSPAGEEESALAGQAAGSSEEVEEAAEATPASVSKLSQALQLEHDMHQELSPDEFHERLHTLHFKNIAAVARYYMENYDQLAHTYGVLLFMYSVFLTKGLELVAADISDTSEPLIHSTYGYGGQSLINLMLTGRAVAHVWDNEQDVGGLKLRGICEQSDIGFITLMEEMRYCTVGSFFKNPRYPVWVMGSDTHLTVLFSNEKRLVSPETPSETGRRIFKSYDPEGNNFISTTMLREVLIALNLVSEPAYVALMQKRLDPENLGIILLNAFMDEFFPLESRSTPDTFELMHYNGIPGSNENNKVRYYCGTAILLEGDLKSVCTSNPMVTCLQTKWPNIEINWHDGHMPSLN", "sequence_length": 560, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f783923c4c6813d44d7401e67e442d54becdd04e5232e82b585859038821af39", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VWN5.json", "taxon_id": "7227", "uniprot_accession": "Q9VWN5", "uniprot_release": "2026_03" } ], "pfam_id": "PF13898", "short_name": "MINDY-3_4_CD", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 12, "discovery_scanned": true, "example_count": 12, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/protein-kinase-c-conserved-region-1-c1-domain-found-in-differentially--cd20819.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/protein-kinase-c-conserved-region-1-c1-domain-found-in-differentially--cd20819.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/differentially-expressed-in-fdcp-8-c-conserved-region-1-ipr047983.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR047983", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/differentially-expressed-in-fdcp-8-c-conserved-region-1-ipr047983.yaml" } ], "pfam_ids": [ "PF13901" ], "protein_name": "Differentially expressed in FDCP 8 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSWCSSEDAHNQSSTPSTRSRKSSWLISKIDENEIDKEVQEMMDDWRRSNEAENHVECIKAALEYCRDKLKELLIDEEDTEMDGKETKTKPINIVSNTEFPEDRDVLGNLVNCLDRQQKAARQQMYFDKIVQLGLERQALQDEAVVSTSSPLDECRAEGHEFVMQPVRGGHNPCCEVCMHTIWRLVQWWRRCRVCGMRAHDKCAEEVKRVCAGVLSTRAKFELNTNLCEERSLAEQEYQCAECTAPICFDGVAEQEARLCDYSGELFCPNCHWNDVWSIPARIVHNLDSTPRPVCRAVKQLLAIIDHRPLIDINESTLSLIKFHKELRRVNELRRNFLLMKCYFVSCRTARRLRILQYLNAHSHFVDNSVMYSPKELRELCDGTLLPDLEQIHTVFRKHIEEECETCAGNGFFCELCDDINVDQKNKILYPFTENTRSCATCLAVYHKKCFERKSLNCPRCERRRKRTEIPKTLSSSDEKEAVRN", "sequence_length": 486, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "35352ccfad04c605e14a7964361315e706e9b5f1de76baadb6191d23a4f3c5cd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O01738.json", "taxon_id": "6239", "uniprot_accession": "O01738", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/autophagosome-endosome-fusion-go0061910.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061910", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/autophagosome-endosome-fusion-go0061910.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rubicon-homology-domain-ipr025258.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rubicon-homology-domain-ipr025258.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rubicon-pi3k-binding-domain-ipr048569.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048569", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rubicon-pi3k-binding-domain-ipr048569.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rh-dom-pf13901.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13901", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rh-dom-pf13901.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rubc-pikbd-pf21054.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21054", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rubc-pikbd-pf21054.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q3TD16", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF13901", "PF21054" ], "protein_name": "Protein associated with UVRAG as autophagy enhancer", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "cdaaa5c3fc2c2545f8355b45a61620328cc74803067792a67b5257647faf17a4", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVSQSIGWGDSPVDLCEGSNRAFQDTDQPACQLDVRLLRHKASWINPLCVQQPLQELCPQRPTVQSSENHVVLDTPSPLRLSILSYRDSLAEMPLSENTADVICSNSAHCSGGKEGDFFLATEEQEVHLQQESLLKNPKTVATSPSPKEGSARSESPHLTASTDDGDARSSSRSHAWNFFPLETFMLPADVEKENLHFYAADIIISVIENMKCNLPNQQQPERWDTEDASRLRGTGAEMTFYTHIKQEPGSSASSHTGCEGCAALQVSPVAETLSYCPVAGEACKHDLNKLVMLELGKYNDITKGCRCSYNSSKSATCESNLSPAGCLARELFRGFCKCWMLSEVNCQLPGSPTTASSGVGDEEYAEEDFDSSVDAAREVMLKSRVPGTEDWVLPRCQIILTVHPPIKRDIAVVAQNFFCAGCGTPIQPKFVKRLRYCEYLGKYFCASCHSSAESCIPARILTMWDFRKYQVSDFSKWLLDSVWHQPVFKLLGGHHSLYAKAKELDRVKDLQEQLFHIKKLLKTCRFADSVLKEFEQVPSHLTDECHIFSMDDFLRTKKGLLAPLLKDILRASLAHVDSCELCQGKGFICEFCQSTTVIFPFQTTTCRRCAACRACFHKQCFQSSRCPRCARIIARRQHLESLPTAAT", "sequence_length": 648, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "cdaaa5c3fc2c2545f8355b45a61620328cc74803067792a67b5257647faf17a4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3TD16.json", "taxon_id": "10090", "uniprot_accession": "Q3TD16", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/protein-kinase-c-conserved-region-1-c1-domain-found-in-differentially--cd20819.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/protein-kinase-c-conserved-region-1-c1-domain-found-in-differentially--cd20819.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/differentially-expressed-in-fdcp-8-c-conserved-region-1-ipr047983.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR047983", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/differentially-expressed-in-fdcp-8-c-conserved-region-1-ipr047983.yaml" } ], "pfam_ids": [ "PF00130", "PF13901" ], "protein_name": "Differentially expressed in FDCP 8 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAILSLRAPGPWQAMQVWADRTLLTPHTGVTSQVLGVAAAVMTPLPGGHAAGRTREARWDAMEYDEKLARFRQAHLNPFNKQSGPRQHEQGPGEEVPDVTPEEALPELPPGEPEFRCPERVMDLGLSEDHFSRPVGLFLASDVQQLRQAIEECKQVILELPEQSEKQKDAVVRLIHLRLKLQELKDPNEDEPNIRVLLEHRFYKEKSKSVKQTCDKCNTIIWGLIQTWYTCTGCYYRCHSKCLNLISKPCVSSKVSHQAEYELNICPETGLDSQDYRCAECRAPISLRGVPSEARQCDYTGQYYCSHCHWNDLAVIPARVVHNWDFEPRKVSRCSMRYLALMVSRPVLRLREINPLLFSYVEELVEIRKLRQDILLMKPYFITCREAMEARLLLQLQDRQHFVENDEMYSVQDLLDVHAGRLGCSLTEIHTLFAKHIKLDCERCQAKGFVCELCREGDVLFPFDSHTSVCADCSAVFHRDCYYDNSTTCPKCARLSLRKQSLFQEPGPDVEA", "sequence_length": 512, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a90a7f2958ecf131987d7634135385d916fde703bff02deaa56b29cbd575181a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZN54.json", "taxon_id": "9606", "uniprot_accession": "Q6ZN54", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/pleckstrin-homology-domain-containing-family-m-member-3-pleckstrin-hom-cd13327.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13327", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/pleckstrin-homology-domain-containing-family-m-member-3-pleckstrin-hom-cd13327.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/pleckstrin-homology-domain-containing-family-m-member-3-pleckstrin-hom-cd14674.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd14674", "section": "canonical_examples", "url": 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"data/traits/sequence/domain/interpro/rubicon-homology-domain-ipr025258.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rubicon-homology-domain-ipr025258.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rh-dom-pf13901.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13901", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rh-dom-pf13901.yaml" } ], "pfam_ids": [ "PF00169", "PF13901" ], "protein_name": "Pleckstrin homology 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"0445fc095acfe542635d8792c686cdfa70aa9c578368a390979a4839519d3e08", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZWE6.json", "taxon_id": "9606", "uniprot_accession": "Q6ZWE6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rh-dom-pf13901.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13901", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rh-dom-pf13901.yaml" } ], "pfam_ids": [ "PF02759", "PF13901" ], "protein_name": "Pleckstrin homology domain-containing family M member 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": 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"path": "data/traits/sequence/domain/pfam/rubc-pikbd-pf21054.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21054", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rubc-pikbd-pf21054.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/run-pf02759.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02759", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/run-pf02759.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": 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"link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/run-domain-1-20-58-900.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/run-domain-1-20-58-900.yaml" } ], "pfam_ids": [ "PF02759", "PF13901", "PF21054" ], "protein_name": "Run domain Beclin-1-interacting and cysteine-rich domain-containing protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRPEGAGMDLGGGDGERLLEKSRREHWQLLGNLKTTVEGLVSANCPNVWSKYGGLERLCRDMQNILYHGLIHDQVCCRQADYWQFVKDIRWLSPHSALHVEKFISLHESDQSDTDSVSERAVAELWLQHSLQCHCLSAQLRPLLGDRQYIRKFYTETAFLLSDAHVTAMLQCLEAVEQNNPRLLAQIDASMFARKQESPLLVTKSQSLTALPGSTYTPPASYAQHSYFGSSSSLQSMPQSSHSSERRSTSFSLSGPSWQPQEDRECLSPAETQTTPAPLPSDSTLAQDSPLTAQEMSDSTLTSPLEASWVSSQNDSPSDVSEGPEYLAIGNPAPHGRTASCESHSSNGESSSSHLFSSSSSQKLESAASSLGDQEEGRQSQAGSVLRRSSFSEGQTAPVASGTKKSHIRSHSDTNIASRGAAGGPRNITIIVEDPIAEGGQYLCSGEGMFRRPSEGQSLISYLSEQDFGSCADLEKENAHFSISESLIAAIELMKCNMMSQCLEEEEVEEEDSDREIQELKQKIRLRRQQIRTKNLLPAYRETENGSFRVTSSSSQFSSRDSTQLSESGSAEDADDLEIQDADIRRSAVSNGKSSFSQNLSHCFLHSTSAEAVAMGLLKQFEGMQLPAASELEWLVPEHDAPQKLLPIPDSLPISPDDGQHADIYKLRIRVRGNLEWAPPRPQIIFNVHPAPTRKIAVAKQNYRCAGCGIRTDPDYIKRLRYCEYLGKYFCQCCHENAQMVVPSRILRKWDFSKYYVSNFSKDLLLKIWNDPLFNVQDINSALYRKVKLLNQVRLLRVQLYHMKNMFKTCRLAKELLDSFDVVPGHLTEDLHLYSLSDLTATKKGELGPRLAELTRAGAAHVERCMLCQAKGFICEFCQNEEDVIFPFELHKCRTCEECKACYHKTCFKSGRCPRCERLQARRELLAKQSLESYLSDYEEEPTEALALEATVLETT", "sequence_length": 956, 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/pleckstrin-homology-domain-containing-family-m-member-3-pleckstrin-hom-cd14674.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/plekhm3-ph-domain-1-ipr037812.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR037812", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/plekhm3-ph-domain-1-ipr037812.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"path": "data/traits/sequence/domain/pfam/rubc-pikbd-pf21054.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21054", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rubc-pikbd-pf21054.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/run-pf02759.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02759", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/run-pf02759.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/run-domain-superfamily-ipr037213.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR037213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/run-domain-superfamily-ipr037213.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/run.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50826", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/run.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/run-domain-1-20-58-900.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/run-domain-1-20-58-900.yaml" } ], "pfam_ids": [ "PF02759", "PF13901", "PF21054" ], "protein_name": "Run domain Beclin-1-interacting and cysteine-rich domain-containing protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRPEGAGMELGGGEERLPEESRREHWQLLGNLKTTVEGLVSTNSPNVWSKYGGLERLCRDMQSILYHGLIRDQACRRQTDYWQFVKDIRWLSPHSALHVEKFISVHENDQSSADGASERAVAELWLQHSLQYHCLSAQLRPLLGDRQYIRKFYTDAAFLLSDAHVTAMLQCLEAVEQNNPRLLAQIDASMFARKHESPLLVTKSQSLTALPSSTYTPPNSYAQHSYFGSFSSLHQSVPNNGSERRSTSFPLSGPPRKPQESRGHVSPAEDQTIQAPPVSVSALARDSPLTPNEMSSSTLTSPIEASWVSSQNDSPGDASEGPEYLAIGNLDPRGRTASCQSHSSNAESSSSNLFSSSSSQKPDSAASSLGDQEGGGESQLSSVLRRSSFSEGQTLTVTSGAKKSHIRSHSDTSIASRGAPESCNDKAKLRGPLPYSGQSSEVSTPSSLYMEYEGGRYLCSGEGMFRRPSEGQSLISYLSEQDFGSCADLEKENAHFSISESLIAAIELMKCNMMSQCLEEEEVEEEDSDREIQELKQKIRLRRQQIRTKNLLPMYQEAEHGSFRVTSSSSQFSSRDSAQLSDSGSADEVDEFEIQDADIRRNTASSSKSFVSSQSFSHCFLHSTSAEAVAMGLLKQFEGMQLPAASELEWLVPEHDAPQKLLPIPDSLPISPDDGQHADIYKLRIRVRGNLEWAPPRPQIIFNVHPAPTRKIAVAKQNYRCAGCGIRTDPDYIKRLRYCEYLGKYFCQCCHENAQMAIPSRVLRKWDFSKYYVSNFSKDLLIKIWNDPLFNVQDINSALYRKVKLLNQVRLLRVQLCHMKNMFKTCRLAKELLDSFDTVPGHLTEDLHLYSLNDLTATRKGELGPRLAELTRAGATHVERCMLCQAKGFICEFCQNEDDIIFPFELHKCRTCEECKACYHKACFKSGSCPRCERLQARREALARQSLESYLSDYEEEPAEALALEAAVLEAT", "sequence_length": 972, 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/protein-kinase-c-conserved-region-1-c1-domain-found-in-differentially--cd20819.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/differentially-expressed-in-fdcp-8-c-conserved-region-1-ipr047983.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR047983", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/differentially-expressed-in-fdcp-8-c-conserved-region-1-ipr047983.yaml" } ], "pfam_ids": [ "PF00130", "PF13901" ], "protein_name": "Differentially expressed in FDCP 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEYDEKLVRFRQAHLNPFNKQLGPRHHEQEPSEKVTSEDTLPELPAGEPEFHYSERMMDLGLSEDHFSRPVGLFLASDVQQLRQAIEECKQVILELPEQSEKQKDAVVRLIHLRLKLQELKDPNEEEPNIRVLLEHRFYKEKSKSVKQTCDKCNTIIWGLIQTWYTCTGCCYRCHSKCLNLISKPCVSSKVSHQAEYELNICPETGLDSQDYRCAECRAPISLRGVPSEARQCDYTGQYYCSHCHWNDLAVIPARVVHNWDFEPRKVSRCSMRYLALMVSRPVLRLREINPLLFNYVEELVEIRKLRQDILLMKPYFITCKEAMEARLLLQLQDRQHFVENDEMYSIQDLLEVHMGRLSCSLTEIHTLFAKHIKLDCERCQAKGFVCELCKEGDVLFPFDSHTSVCNDCSAVFHRDCYYDNSTTCPKCARLTLRKQSLFQEPGLDMDA", "sequence_length": 448, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "76825c261a58b236cfc052eca1b69443b6bfb89a33ffbc9d1541850be2959663", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q99J78.json", "taxon_id": "10090", "uniprot_accession": "Q99J78", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/autophagosome-endosome-fusion-go0061910.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061910", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/autophagosome-endosome-fusion-go0061910.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rubicon-homology-domain-ipr025258.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rubicon-homology-domain-ipr025258.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rubicon-pi3k-binding-domain-ipr048569.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048569", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rubicon-pi3k-binding-domain-ipr048569.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rh-dom-pf13901.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13901", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rh-dom-pf13901.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rubc-pikbd-pf21054.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21054", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rubc-pikbd-pf21054.yaml" } ], "pfam_ids": [ "PF13901", "PF21054" ], "protein_name": "Protein associated with UVRAG as autophagy enhancer", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSQSTVRQDSPVEPWEGISDHSGIIDGSPRLLNTDHPPCQLDIRLMRHKAVWINPQDVQQQPQDLQSQVPAAGNSGTHFVTDAASPSGPSPSCLGDSLAETTLSEDTTDSVGSASPHGSSEKSSSFSLSSTEVHMVRPGYSHRVSLPTSPGILATSPYPETDSAFFEPSHLTSAADEGAVQVSRRTISSNSFSPEVFVLPVDVEKENAHFYVADMIISAMEKMKCNILSQQQTESWSKEVSGLLGSDQPDSEMTFDTNIKQESGSSTSSYSGYEGCAVLQVSPVTETRTYHDVKEICKCDVDEFVILELGDFNDITETCSCSCSSSKSVTYEPDFNSAELLAKELYRVFQKCWILSVVNSQLAGSLSAAGSIVVNEECVRKDFESSMNVVQEIKFKSRIRGTEDWAPPRFQIIFNIHPPLKRDLVVAAQNFFCAGCGTPVEPKFVKRLRYCEYLGKYFCDCCHSYAESCIPARILMMWDFKKYYVSNFSKQLLDSIWHQPIFNLLSIGQSLYAKAKELDRVKEIQEQLFHIKKLLKTCRFANSALKEFEQVPGHLTDELHLFSLEDLVRIKKGLLAPLLKDILKASLAHVAGCELCQGKGFICEFCQNTTVIFPFQTATCRRCSACRACFHKQCFQSSECPRCARITARRKLLESVASAAT", "sequence_length": 662, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bff42ae2aa8f9a894fd1ed65a2ae0911517131448b7abfa8b7f3ae71ba7247b2", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H714.json", "taxon_id": "9606", "uniprot_accession": "Q9H714", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/protein-kinase-c-conserved-region-1-c1-domain-found-in-differentially--cd20819.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/protein-kinase-c-conserved-region-1-c1-domain-found-in-differentially--cd20819.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/differentially-expressed-in-fdcp-8-c-conserved-region-1-ipr047983.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR047983", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/differentially-expressed-in-fdcp-8-c-conserved-region-1-ipr047983.yaml" } ], "pfam_ids": [ "PF00130", "PF13901" ], "protein_name": "Differentially expressed in FDCP 8 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSWKDSLTSIPGTVAQLINESASNLLHASSTLGSTVGLGGSGSTGSGSEAGGSEESGPQGAEYRALPIPASLVREQWRLIFTSDANIQDLQAAIAHCRDLVLLSEELSEERRWLVRHLVDLRYSLQELEEAQEQHSLSSDMVVMNAIRAVVGHHFVPHHPHHGKRNRLQAAAKRNYCDHCTTIIWSVVQNSYVCSDCGFLVHQKCIDGVKRVCAHVLVSERQHPISEICPEIGLASQGYKCAECGTMLNIKNTWIEPRLCDYSGLYYCPRCNWNDSNFIPARIIHNWDFSPRRVSRTALQEIRLFLNKPLIRLEEDNPKLFVFVEKLCAVKKLRQNLVHMRHYLAACKIASELKLVDQQLGVRRHLAQSNEFYSLSDLSQVESGALSEFLQGVFKAFNDHIRSCPMCLAQAYICEICSNNEVIFPFDDGCIKCDQCNSIFHRVCLTRKNMICPKCIRIQERRLQLDRMKSTEDDDDDDDGVATDDDVTAAE", "sequence_length": 492, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "03f5b08b3957c178aead3effb9950bf4f3fe86af665399e42a28366985e69225", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VTT9.json", "taxon_id": "7227", "uniprot_accession": "Q9VTT9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rh-dom-pf13901.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13901", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rh-dom-pf13901.yaml" } ], "pfam_ids": [ "PF02759", "PF13901" ], "protein_name": "Pleckstrin homology domain-containing family M member 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSVVENGLDPQAAIPVIKKKLVGSVKALQKQYVSLDTVVTSEDGDANTMCSALEAVFIHGLHAKHIRAEAGGKRKKSAHQKPLPQPVFWPLLKAVTHKHIISELEHLTFVNTDVGRCRAWLRLALNDGLMECYLKLLLQEQARLHEYYQPTALLRDAEEGEFLLSFLQGLTSLSFELSYKSAILNEWTLTPLALSGLCPLSELDPLSTSGAELQRKESLDSISHSSGSEDIEVHHSGHKIRRNQKLTASSLSLDTASSSQLSCSLNSDSCLLQENGSKSPDHCEEPMSCDSDLGTANAEDSDRSLQEVLLEFSKAQVNSVPTNGLSQETEIPTPQASLSLHGLNTSTYLHCEAPAEPLPAQAASGTQDGVHVQEPRPQAPSPLDLQQPVESTSGQQPSSTVSETAREVGQGNGLQKAQAHDGAGLKLVVSSPTSPKNKSWISEDDFYRPSREQPLESASDHPIASYRGTPGSRPGLHRHFSQEPRKNCSLGALDQACVPSPGRRQAQAAPSQGHKSFRVVHRRQMGLSNPFRGLMKLGTVERRGAMGIWKELFCELSPLEFRLYLSNEEHTCVENCSLLRCESVGPAHSDGRFELVFSGKKLALRASSQDEAEDWLDRVREALQKVRPQQEDEWVNVQYPDQPEEPPEAPQGCLSPSDLLSEPAALQGTQFDWSSAQVPEPDAIKESLLYLYMDRTWMPYIFSLSLEALKCFRIRNNEKMLSDSHGVETIRDILPDTSLGGPSFFKIITAKAVLKLQAGNAEEAALWRDLVRKVLASYLETAEEAVTLGGSLDENCQEVLKFATRENGFLLQYLVAIPMEKGLDSQGCFCAGCSRQIGFSFVRPKLCAFSGLYYCDICHQDDASVIPARIIHNWDLTKRPICRQALKFLTQIRAQPLINLQMVNASLYEHVERMHLIGRRREQLKLLGDYLGLCRSGALKELSKRLNHRNYLLESPHRFSVADLQQIADGVYEGFLKALIEFASQHVYHCDLCTQRGFICQICQHHDIIFPFEFDTTVRCAECKTVFHQSCQAVVKKGCPRCARRRKYQEQNIFA", "sequence_length": 1056, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ce95513bb21a74e12cb5bf5a3862b08dfa7e12605f14471d5804cf1f22410f6c", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y4G2.json", "taxon_id": "9606", "uniprot_accession": "Q9Y4G2", "uniprot_release": "2026_03" } ], "pfam_id": "PF13901", "short_name": "RH_dom", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coiled-coil-domain-containing-protein-34-181-ipr025259.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coiled-coil-domain-containing-protein-34-181-ipr025259.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccdc34-pf13904.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccdc34-pf13904.yaml" } ], "pfam_ids": [ "PF13904" ], "protein_name": "Coiled-coil domain-containing protein 34", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRAAGPWRAASPAPCTRYLARCKPGFRPSSSFVVDLLVDSGDPGLEDVALTECLSPPSLSCSNSTLSLLSPLGHQSFPFGADDSEGEDEEALDEDARESESKVESLEGIEFQQRSSCEVESQDKQEKLVLLQHGSLTPWEMWFVGKEKEERGRLQQKFLEELNQQIEKRKEMEEREKRKIIAEVKHKEWVQKKNKQERKEREQKINKEMEEKEAKKREKEHLQEKAKEKYQEWLKKKKAEEYEKKKKEKEKEKQRQAELQEKKEIAEKKFKEWLENAKNKPRPAAKSYGYSSGKLTGFYSGNSYPEPTFYNPIPWKPIHMPPPKEAKSGPGKKSKRHAASQPLPSSSLAVHNAKSSLCLGALCRGQR", "sequence_length": 367, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f307eb6ce742886cd2eb4109b6d92eecf6448cfe59f5786b8f1b6d4ab1e9a9cf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UI66.json", "taxon_id": "10090", "uniprot_accession": "Q3UI66", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coiled-coil-domain-containing-protein-34-181-ipr025259.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coiled-coil-domain-containing-protein-34-181-ipr025259.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccdc34-pf13904.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccdc34-pf13904.yaml" } ], "pfam_ids": [ "PF13904" ], "protein_name": "Coiled-coil domain-containing protein 34", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWAAGRWGPTFPSSYAGFSADCRPRSRPSSDSCSVPMTGARGQGLEVVRSPSPPLPLSCSNSTRSLLSPLGHQSFQFDEDDGDGEDEEDVDDEEDVDEDAHDSEAKVASLRGMELQGCASTQVESENNQEEQKQVRLPESRLTPWEVWFIGKEKEERDRLQLKALEELNQQLEKRKEMEEREKRKIIAEEKHKEWVQKKNEQKRKEREQKINKEMEEKAAKELEKEYLQEKAKEKYQEWLKKKNAEECERKKKEKEKEKQQQAEIQEKKEIAEKKFQEWLENAKHKPRPAAKSYGYANGKLTGFYSGNSYPEPAFYNPIPWKPIHMPPPKEAKDLSGRKSKRPVISQPHKSSSLVIHKARSNLCLGTLCRIQR", "sequence_length": 373, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "827e89a8917bc3b5799fdf29b009c3318dad654b042d35a8a934eb4677daf2a9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96HJ3.json", "taxon_id": "9606", "uniprot_accession": "Q96HJ3", "uniprot_release": "2026_03" } ], "pfam_id": "PF13904", "short_name": "CCDC34", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cdh1-dbd-1-pf18196.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18196", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cdh1-dbd-1-pf18196.yaml" } ], "pfam_ids": [ "PF00176", "PF00271", "PF00385", "PF13907", "PF18196", "PF23588" ], "protein_name": "ATP-dependent chromatin remodeler hrp3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTSAIALALSSSKAIEQLDHVQTETPNLKQEMSESPSNSGVASKRKLQSTEWLDPELYGLRRSGRTRSNPGRYVDTDDQEDVFPSKHRKGTRNGSSFSRHRTIRDLDDEAESVTSEESESDDSSYGGTPKKRSRQKKSNTYVQDEIRFSSRNSKGVNYNEDAYFESFEEEEEEEMYEYATEVSEEPEDTRAIDVVLDHRLIEGHDGSTPSEDYEFLIKWVNFSHLHCTWEPYNNISMIRGSKKVDNHIKQVILLDREIREDPTTTREDIEAMDIEKERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTWEASSIIEPIAATEIQAFQEREESALSPSRGTNYGNSRPKYRKLEQQPSYITGGELRDFQLTGVNWMAYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPLSTVPAWQETLALWASDMNCISYLGNTTSRQVIRDYEFYVDGTQKIKFNLLLTTYEYVLKDRSVLSNIKWQYMAIDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEINLEAPDEEQEAYIRSLQEHLQPYILRRLKKDVEKSLPSKSERILRVELSDLQMYWYKNILTRNYRVLTQSISSGSQISLLNIVVELKKASNHPYLFDGVEESWMQKINSQGRRDEVLKGLIMNSGKMVLLDKLLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKDTIEEDVLERARRKMILEYAIISLGVTDKQKNSKNDKFSAEELSAILKFGASNMFKAENNQKKLEDMNLDEILEHAEDHDTSNDVGGASMGGEEFLKQFEVTDYKADVSWDDIIPLTEREKFEEEDRLREEEEALKQEIELSSRRGNRPYPSSAVESPSYSGTSERKSKKQMLKDEVLLEKEIRLLYRAMIRYGSLEHRYNDIVKYADLTTQDAHVIKKIAADLVTASRKAVSAAEKDLSNDQSNNKSSRKALLITFKGVKNINAETLVQRLNDLDILYDAMPTSGYSNFQIPMHVRSVHGWSCQWGPREDSMLLSGICKHGFGAWLEIRDDPELKMKDKIFLEDTKQTDNSVPKDKENKEKKVPSAVHLVRRGEYLLSALREHHQNFGIKSSPAISTNGKTQPKKQTANRRQSGKPNVKSAQKIESATRTPSPAISESRKKPSSKDTKIETPSREQSRSQTASPVKSEKDDGNVSLNAEQKARCKELMYPVRKHMKRLRKDSSGLGRAELVKLLTECLTTIGKHIEKTVNDTPSEEKATVRKNLWMFACYFWPKEEVKYTSLISMYEKMK", "sequence_length": 1388, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "91f9b8315d463a90274dfb507e4ee151c9a61991c52bd87a649bb411453aa6e5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O14139.json", "taxon_id": "284812", "uniprot_accession": "O14139", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cdh1-2-sant-hl1-pf18375.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18375", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cdh1-2-sant-hl1-pf18375.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chd1-like-c-pf13907.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13907", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chd1-like-c-pf13907.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-chd1-hrp3-pf23588.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-chd1-hrp3-pf23588.yaml" } ], "pfam_ids": [ "PF00176", "PF00271", "PF00385", "PF13907", "PF18375", "PF23588" ], "protein_name": "ATP-dependent chromatin remodeler CHD1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAILKKQQQQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEEDDDEEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISEGKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKKEALSGAGSSKRRKARAKKNKAMKSIKVKEEIKSDSSPLPSEKSDEDDDKLSESKSDGRERSKKSSVSDAPVHITASGEPVPISEESEELDQKTFSICKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQNSDQNSNLNPHVIRNPDVERLKENTNHDDSSRDSYSSDRHLTQYHDHHKDRHQGDSYKKSDSRKRPYSSFSNGKDHRDWDHYKQDSRYYSDREKHRKLDDHRSRDHRSNLEGSLKDRSHSDHRSHSDHRLHSDHRSSSEYTHHKSSRDYRYHSDWQMDHRASSSGPRSPLDQRSPYGSRSPFEHSVEHKSTPEHTWSSRKT", "sequence_length": 1710, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c04c2215c32a67ada228bb8cde434a8371fe7f1f4be44ad4f8f477a40a7087f6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O14646.json", "taxon_id": "9606", "uniprot_accession": "O14646", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cdh1-2-sant-hl1-pf18375.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18375", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cdh1-2-sant-hl1-pf18375.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chd1-like-c-pf13907.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13907", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chd1-like-c-pf13907.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-chd1-hrp3-pf23588.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-chd1-hrp3-pf23588.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/chromo-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00598", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/chromo-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O14647", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00176", "PF00271", "PF00385", "PF13907", "PF18375", "PF23588" ], "protein_name": "ATP-dependent chromatin remodeler CHD2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f02cb664587cf225ed33248c59310f701db496bf118677aef804ce8015d934c1", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MMRNKDKSQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVYGVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKQEPSEDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDEDDDDDEAPKRQTRRRAAKNVSYKEDDDFETDSDDLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAIEANGDPSGDFDTEKDEGEIQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQELASELNKQYQIVERVIAVKTSKSTLGQTDFPAHSRKPAPSNEPEYLCKWMGLPYSECSWEDEALIGKKFQNCIDSFHSRNNSKTIPTRECKALKQRPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQRSSASESETEDSDDDKKPKRRGRPRSVRKDLVEGFTDAEIRRFIKAYKKFGLPLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEGKGPGKRRGPTIKISGVQVNVKSIIQHEEEFEMLHKSIPVDPEEKKKYCLTCRVKAAHFDVEWGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKILPVETDKKPQGKQLQTRADYLLKLLRKGLEKKGAVTGGEEAKLKKRKPRVKKENKVPRLKEEHGIELSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGPVHITAGSEPVPIGEDEDDDLDQETFSICKERMRPVKKALKQLDKPDKGLNVQEQLEHTRNCLLKIGDRIAECLKAYSDQEHIKLWRRNLWIFVSKFTEFDARKLHKLYKMAHKKRSQEEEEQKKKDDVTGGKKPFRPEASGSSRDSLISQSHTSHNLHPQKPHLPASHGPQMHGHPRDNYNHPNKRHFSNADRGDWQRERKFNYGGGNNNPPWGSDRHHQYEQHWYKDHHYGDRRHMDAHRSGSYRPNNMSRKRPYDQYSSDRDHRGHRDYYDRHHHDSKRRRSDEFRPQNYHQQDFRRMSDHRPAMGYHGQGPSDHYRSFHTDKLGEYKQPLPPLHPAVSDPRSPPSQKSPHDSKSPLDHRSPLERSLEQKNNPDYNWNVRKT", "sequence_length": 1828, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f02cb664587cf225ed33248c59310f701db496bf118677aef804ce8015d934c1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O14647.json", "taxon_id": "9606", "uniprot_accession": "O14647", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cdh1-dbd-1-pf18196.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18196", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cdh1-dbd-1-pf18196.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-chd1-hrp3-pf23588.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-chd1-hrp3-pf23588.yaml" } ], "pfam_ids": [ "PF00176", "PF00271", "PF00385", "PF13907", "PF18196", "PF23588" ], "protein_name": "ATP-dependent chromatin remodeler CHD1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAKDISTEVLQNPELYGLRRSHRAAAHQQNYFNDSDDEDDEDNIKQSRRKRMTTIEDDEDEFEDEEGEEDSGEDEDEEDFEEDDDYYGSPIKQNRSKPKSRTKSKSKSKPKSQSEKQSTVKIPTRFSNRQNKTVNYNIDYSDDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTATDNQKKLEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFLKQFEVTDYKADIDWDDIIPEEELKKLQDEEQKRKDEEYVKEQLEMMNRRDNALKKIKNSVNGDGTAANSDSDDDSTSRSSRRRARANDMDSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKDCVHEEEKNRKEILEKLEKHATAYRAKLKSGEIKAENQPKDNPLTRLSLKKREKKAVLFNFKGVKSLNAESLLSRVEDLKYLKNLINSNYKDDPLKFSLGNNTPKPVQNWSSNWTKEEDEKLLIGVFKYGYGSWTQIRDDPFLGITDKIFLNEVHNPVAKKSASSSDTTPTPSKKGKGITGSSKKVPGAIHLGRRVDYLLSFLRGGLNTKSPSADIGSKKLPTGPSKKRQRKPANHSKSMTPEITSSEPANGPPSKRMKALPKGPAALINNTRLSPNSPTPPLKSKVSRDNGTRQSSNPSSGSAHEKEYDSMDEEDCRHTMSAIRTSLKRLRRGGKSLDRKEWAKILKTELTTIGNHIESQKGSSRKASPEKYRKHLWSYSANFWPADVKSTKLMAMYDKITESQKK", "sequence_length": 1468, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "75955c4df5c9fa236c57e5c82bc93c7d143508d5373d0c1fb6dce6001df4a304", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32657.json", "taxon_id": "559292", "uniprot_accession": "P32657", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cdh1-2-sant-hl1-pf18375.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18375", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cdh1-2-sant-hl1-pf18375.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/chd1-like-c-pf13907.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13907", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/chd1-like-c-pf13907.yaml" } ], "pfam_ids": [ "PF00176", "PF00271", "PF00385", "PF13907", "PF18375", "PF23588" ], "protein_name": "ATP-dependent chromatin remodeler CHD1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNGHSDEESVRNGSGESSQSGDDCGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSDSGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLRKQPQQAQQQRPASSNSGSEEDSSSSEDSDDSSSGAKRKKHNDEDWQMSGSGSPSQSGSDSESEEERDKSSCDGTESDYEPKNKVRSRKPQNRSKSKNGKKILGQKKRQIDSSEDEDDEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQPEDEEFETIERVMDCRVGRKGATGATTTIYAVEADGDPNAGFERNKEPGDIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGLPDYYCKWQGLPYSECSWEDGALISKKFQTCIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLSVGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPEEQRRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCVKALKDSSSGTERAGGRLGKVKGPTFRISGVQVNAKLVIAHEDELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKREAQRLCGAGGSKRRKTRAKKSKAMKSIKVKEEIKSDSSPLPSEKSDEDDDKLNDSKPESKDRSKKSVVSDAPVHITASGEPVPIAEESEELDQKTFSICKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQNSDQNSNVATTHVIRNPDMERLKENTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDSYKKSDSRKRPYSSFSNGKDHREWDHYRQDSRYYSDREKHRKLDDHRSREHRPSLEGGLKDRCHSDHRSHSDHRMHSDHRSSSEHTHHKSSRDYRYLSDWQLDHRAASSGPRSPLDQRSPYGSRSPFEHSAEHRSTPEHTWSSRKT", "sequence_length": 1711, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ef256c767dcd9688a937ec2fc08f859baa038103cee942d92841f0ceef881c98", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P40201.json", "taxon_id": "10090", "uniprot_accession": "P40201", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/chromodomain-helicase-dna-binding-protein-1-like-c-terminal-domain-ipr025260.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025260", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/chromodomain-helicase-dna-binding-protein-1-like-c-terminal-domain-ipr025260.yaml" } ], "pfam_ids": [ "PF13907" ], "protein_name": "CHD1 helical C-terminal domain containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEASDGQGGEGDKPLEQVTNVSCLETSSSASPARDSLMRHAKGLDQDTFKTCKEYLRPLKKFLRKLHLPRDLPQKKKLKYMKQSLVVLGDHINTFLQHYCQAWEIKHWRKMLWRFISLFSELEAKQLRRLYKYTKSSQPAKFLVTFCASDAPERSLLADREDSLPKLCHAWGLHSNISGMKERLSNMQTPGQGSPLPGQPRSQDHVKKDSLRELSQKPKLKRKRIKEAPETPETEP", "sequence_length": 236, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ede9fc17068bbd988ecf13e6ead2eb38897472801b27fad56d7bedcc1af44afc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q86WR6.json", "taxon_id": "9606", "uniprot_accession": "Q86WR6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/chromodomain-helicase-dna-binding-protein-1-like-c-terminal-domain-ipr025260.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025260", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/chromodomain-helicase-dna-binding-protein-1-like-c-terminal-domain-ipr025260.yaml" } ], "pfam_ids": [ "PF13907" ], "protein_name": "CHD1 helical C-terminal domain containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEASDWQGGEGDKPLEKVGSVPCLERSSSTVPTGDALVRHAKGLSQDTFKICKEYLRPLKKFLRKLNLPKDLPQKKRIKYTKQSLEALGGHINTFLQHYCRAWEIKHWKKMLWRFVSLFSELEAKQLRRLYKYTKTNQTAKFLAALCPLDAPERSLLANQEDCLPRLCSAWGLHGNISGMKERLSKMQAPGQEVVMLEEPRSSHCSRGDSLRKLPQKPKLKKKRIKERLESPKSCS", "sequence_length": 236, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5fcf72bbc759e94abc4c302cb464ef9082ef5a50a33353eed0ffeaca05cc1040", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D979.json", "taxon_id": "10090", "uniprot_accession": "Q9D979", "uniprot_release": "2026_03" } ], "pfam_id": "PF13907", "short_name": "CHD1-like_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/emard-n-pf13910.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13910", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/emard-n-pf13910.yaml" } ], "pfam_ids": [ "PF13910", "PF30158" ], "protein_name": "Endoplasmic reticulum membrane-associated RNA degradation protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEILTGDSITTCLSPLVHDLICNLGFELTEICDINSIVTQNGEVRWKAITDRVSYAELGHSLDYRQSVQRLGPVCEAIHLHISSLSRAQFETQYSPWYQWTTSPELFLEIYDALESSQSAAISLSVMKLASCLERALGDVFLLIGNECPFLLRDLLASAELAHVFGHAVMDVLKVFIGSPCGLNLRNVLWHGFASPQDIPPKYCSALLLLTAGLGQLLKSYLHHTKVQLAHRPFVTLTNLEDVIVFPGVTDKVLSALETVMTKSSFLLKIMLPYWELAVSKFKSHRFADCTMLLLSQLEAGLRRVFATVNKCPDRLLTAESTILYTTFDEILAKHMSDGSINQLPCFLGEPAMDFLWDFLNYQEGPRIRDRLSHGEINIREFPKAAASQLLTFCLVLLLRFTEEDTLSELKEEAAIQLLVSLAERYRSRCHPAFQLQKQVLSCEKSLRMWPVLPLPEECCQEAGRSEGNSEACACNSLISKILCELCHYLPASACAINGLDGLPSEKWSQLLNELCNTRIPTLFCPKIVLEVLVVLRGISSQCQRVSDQVIASLQLRHRQWVEHTLRSRQRQNYVRMLSSVGLLCPVLSLILLLLALELVSVHAVHGKDAQERQQYLRFLKLILQYTENLVAYTSRQKNKWNEAVSLTRAVLLRIWTFSEKKQMLIHLTKNTNKVDTG", "sequence_length": 678, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dc11ae3f35918c1049c35e079a9ca9a3346c8eebaacfdeade8ba9faffce139c9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3B8R1.json", "taxon_id": "10116", "uniprot_accession": "Q3B8R1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Macaca fascicularis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/emard-n-pf13910.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13910", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/emard-n-pf13910.yaml" } ], "pfam_ids": [ "PF13910", "PF30158" ], "protein_name": "Endoplasmic reticulum membrane-associated RNA degradation protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "VLIGDPITTCLSPSVYDIICNLGFQLRENCDINSIVTQNGEVCWKTITDCVSYTESDQGLDYWGSVRLLGPVCEAVHSHFLSLTKGQFEIRYAPWFQWTSFPELFPEIFDALESLQSPAISLSLMKLTSCLERALGDVFLLIGKECPFLLRDLLASEELAQVFGQSVMNVLKVFVGSPCGLNLRNVLWHGFASPEEVPPKYCSMMMLLTAGLGQLLKSYLQKTKLTLAHRSFITPTNLEDLIVFPDVTYEVLSVLEEAMTKSAFILKIMLPYWEVALVKFKSHRFADCAILLLTQLETGLRNVFATLNRCPQRLLTAEILAKHLNDGKINQLPLFLGEPAMEFLWDFLNHQEGPRIRDHLSHGEINLHEFSKETTNQLLAFSVVLLLRFVDEGLLSVFKEKASVELLISLAEGYSSRCHPVFQLKKQVLSCEESIRVWALLPFPKELTWEAVRLEDNSETNACHSLITKMTDELYHHMPEDHCVLKDLDHLPTETWPQLLHELCSTPVRTLFCPRIVLEVLVVLRSIGKQCHRVSGQVTIASELRHRQWVERTLRSRQRQNYLRMWSSIRLLSPVLSLILFLITLELVNVHAVCGKNAHEYQQYLKFVKSILQYTENLVAYTSYEKNKWNETINLTHTVLLKIWTFSEKKQMLIHLAKKSTSKVLMKT", "sequence_length": 668, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8db1ad435a315f7dc8f0e7e13d08749bea59ff79aac2343d4a573d1ddd9ce6fb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q4R6F2.json", "taxon_id": "9541", "uniprot_accession": "Q4R6F2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/endoplasmic-reticulum-membrane-associated-rna-degradation-protein-n-te-ipr025209.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025209", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/endoplasmic-reticulum-membrane-associated-rna-degradation-protein-n-te-ipr025209.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/emard-n-pf13910.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13910", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/emard-n-pf13910.yaml" } ], "pfam_ids": [ "PF13910", "PF30158" ], "protein_name": "Endoplasmic reticulum membrane-associated RNA degradation protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVLIGDPITTCLSPSVYDIICNLGFQLRENCDINSIVTQNGEVCWKTITDCVSYTESEQGLDYWGSVRLLGPVCEAVHSHFLSLTKGQFEIRYAPWFQWTSFPELFPEIFDALESLQSPAISLSLMKLTSCLERALGDVFLLIGKECPFLLRDLLSSEELAQVFSQSVMNVLKVFVGSPCGLNLRNVLWHGFASPEEIPPKYCSMMILLTAGLGQLLKSYLQNTKLTLAHRSFISLTNLEDLIVFPDVTYEVLSVLEEVMMKSAFILKIMLPYWEVALVKFKSHRFADCAILLLTQLETGLRNVFATLNRCPKRLLTAESTALYTTFDQILAKHLNDGKINQLPLFLGEPAMEFLWDFLNHQEGPRIRDHLSHGEINLHEFSKETTNQLLAFSLVLLLRFVDDCLLSVFKEKSAVELLISLAEGYSSRCHPVFQLKKQVLSCEESIRVWALLPFPEELTRQAVRLEDNSETNACHSLITKMTDELYHHMPENRCVLKDLDRLPTETWPQLLRELCSTPVPTLFCPRIVLEVLVVLRSISEQCRRVSSQVTVASELRHRQWVERTLRSRQRQNYLRMWSSIRLLSPVLSLILLLIALELVNIHAVCGKNAHEYQQYLKFVKSILQYTENLVAYTSYEKNKWNETINLTHTALLKMWTFSEKKQMLIHLAKKSTSKVLL", "sequence_length": 678, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70dda39875d8603f8a222496f3e128b5735bbdaa94e10750ee9ddd2b23914728", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T6L9.json", "taxon_id": "9606", "uniprot_accession": "Q5T6L9", "uniprot_release": "2026_03" } ], "pfam_id": "PF13910", "short_name": "EMARD_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-conserved-domain-ipr025261.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025261", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-conserved-domain-ipr025261.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4210-pf13915.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13915", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4210-pf13915.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chromosome-seg-pf13889.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13889", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chromosome-seg-pf13889.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q32MH5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF13889", "PF13915" ], "protein_name": "Atos homolog protein A", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "27be8b0c335bf10426738cb0267b5a01c1207dfc1e98870794232049aeefddb7", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKPDRDTLDEYFEYDAEEFLVSLALLITEGRTPECSVKGRTESFHCPPAQSCYPVTTKHECSDKLAQCRQARRTRSEVTLLWKNNLPIMVEMMLLPDCCYSDDGPTTEGIDLNDPAIKQDALLLERWILEPVPRQNGDRFIEEKTLLLAVRSFVFFSQLSAWLSVSHGAIPRNILYRISAADVDLQWNFSQTPIEHVFPVPNVSHNVALKVSVQSLPRQSNYPVLTCSIHTNIGLYEKRIQQHKLKTHQHHNPNEAEQCGTNSSQRLCSKQTWTMAPESVLHAKSGPSPEYTAAVKNIKLYPGTGSKSDHGTSQANILGFSGIGDIKSQETSVRTLKSFSMVDSSISNRQSFWQSAGETNPLIGSLIQERQEIIARIAQHLIHCDPSTSHVSGRPFNTQESSSLHSKLFRVSQENENVGKGKEAFSMTFGSPEFSSPEDTNEGKIRLKPETPRSETCISNDFYSHMPVGETNPLIGSLLQERQDVIARIAQHLEHIDPTASHIPRQSFNMHDSSSVASKVFRSSYEDKNLLKKNKDESSVSISHTKCSLLGDISDGKNLVPNKCFTSFKNNSKEKCSLKHQTRNQCQNNPSEIIQSTYQETQNKSSSLSTSSILSQHKENNLDLTSRFKEQEMSNGIDKQYSNCTTIDKQICTNKYKEKIINENYNPKFFGNLQSDDSKKNDSKIKVTVLEMSEYLNKYESMSSNKDSKRPKTCEQNTQLNSIENYLNKDNEGFKCKKSDQLKNEQDKQEDPTNEKSQNYSQRRSIKDCLSTCEQPKNTEVLRTTLKHSNVWRKHNFHSLDGTSTRAFHPQTGLPLLSSPVPQRKTQSGCFDLDSSLLHLKSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLLGNFEESVLNYRFDPLGIVDGFTAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPPSGTIQVTLFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVKQEVKRSVNKENIRHTEERLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYELKSYTESPTNPQFSPRC", "sequence_length": 1076, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "27be8b0c335bf10426738cb0267b5a01c1207dfc1e98870794232049aeefddb7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q32MH5.json", "taxon_id": "9606", "uniprot_accession": "Q32MH5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-conserved-domain-ipr025261.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025261", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-conserved-domain-ipr025261.yaml" } ], "pfam_ids": [ "PF13889", "PF13915" ], "protein_name": "Atos homolog protein A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKPDRDALDEYFEYDAEEFLVSLALLITEGRTPECSVKGRAESFHCPPAQSRFPGTARHECSDKLAQCRQARRTRSEVTLLWKNNLPIMVEVMLLPDCCYSDEGPSTEGADLNDPAIKQDALLLERWILEPVPRQNGDRFIEEKALLLAVRSFVFFSQLSAWLSVSHGAIPRNILYRISAADVDLQWSFSQTPTEHVFPVPNVSHNVALKVSVQSLPRQAHYPVLTCSIHTNIGLYEKRIQEQELRACQHHGPGEVEYRCPSSSQSLCSKHTWTMAPVSALHVRSGMPPEYTAAIRNVRLCPGTGSKSDQGAPQASVLGFSGTGGEVRSQEASVRTFKSLPVVDSSVSSCQSSRQPVGEPNPLMDSLIQDRQEVIARIAQHLIHCDPSSSRMSELPFNTQESTSLSPKLHPVSQESGCVRRYKEAFSVSFGSPEFGSPGDSREGKVREKSETRPGETCTSHSLYPRQPAGEANPLIGSLLQERQDVIARIAQHLEHIDPAAHIPRPAFSKHDSNSIPSKVFRSSFDDKTLLKKGRENVSVSVSHTEVSLLGDRGDGESLKPSKCLRSFKYSPQEKPLKPEVRTQHQNHPDSITPTARQELLNKAAGLLTSSNTALCKESSLGLVSRLESTSCKLQLKEQEMSHETEKQCLHCNSIDKQICTNTCTEKINDEHSPGSLRHLQCDDSKGIDSKLKVTLLEMPDSLNKNKTNCSSKDSKRSKTCEQSIRVGTENDLSEENEGPGSTVSDRLKTEQEAKRDSGAGKPHSVKHCLSAGERLHSADMLRTTLKHSSVWRKHNFHSLDGTSTRAFHPQTGLPLLSSPVPQRKTQSGCFDLDASLLHLRSLSSKSSRPCLNIDEDPDVHEKPFLSSSAPPITSLSLLGNFEESVLNYRLDPLGIVDGFTAEVGASGTFCPTHLTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPPSGTIQVTLFNPNKTVVKMFVVVYDLRGMPANHQTFLRQRTFSVPVKQEMKRSINKENVQHTAQLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYELKSYTESPTNPQFSPRC", "sequence_length": 1075, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c8580e5f0643ced6666f7b7c13398c8d1912d46d91f484728eba68df14367f37", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q69ZK7.json", "taxon_id": "10090", "uniprot_accession": "Q69ZK7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4210-pf13915.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chromosome-seg-pf13889.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13889", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chromosome-seg-pf13889.yaml" } ], "pfam_ids": [ "PF13889", "PF13915" ], "protein_name": "Protein Atossa", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIPTSVTNSPPPAGLGQNGASASLGSATAAAGGGMLSGLGMVAVSGCGSAGTGAQNNYGSVVLGLASLILEGRPIADDEYQQQTVGVVGSGAATAGSGGGRLSPRPSTSRAAINITTNPYGSMGGSENRAVNGSGSTGSPSSSSLTHQRWTQKLCQLRQISPAAQTMSAEPELVSLAINDLNKDHGDYEIVRRVMLNRAGGTGLVSSAGGGTNNSSAASSPGSNSSDNILHSLQSLATTCLRGGPALAPPPSVESRPLNLAFHWSGLGGSGGRGLGFGGGAASISNTPTTTATATASSGASSSASRPKHGPHCDQFLRKMGLAKGEMPSEAEEHICDMSYVNMTCNRWRAYCMKMEAILARREPVCIEVYLGPVSHKLLLEQWIICGREKVPPPTMTLPSLCSAIRSQLYFSQIVAWCDLLRKCDPSVYDSGRVIFSNCGNNAGDLATSYTTCGGQKRPRLNIFYRIKQHTTTNSNSGLHQEDGFSAKANVHNFPNVNVSESYSISVSVRSLPRINGGLPHVEPLPPSPAPRSLRPCGGDPASTPTGGGGLHAATPTGLGARTSALTPTTTAGGSNCDNGKPGMGQILDELDGDTSLSHRERQLQKYRKRMQRRDKKRERKATPDRLNSRQQSEEPMDEGEESQTQSQTTSETQSLALTLQQPRRIAMISTGTQTSLSSCQQCGSEKTLLCLSCTGGGGAHGGSNGTANGSTNGATDDGDDSDTTASEMEETSSCSLSSADLIVGTPRNNAELLLQAIQRTPKNRNRKPHPGVLDQVSCRNADLNGGQNNNLLKATPATSGCQVCKRQKTQHNFANGKVHQPTNGKQASNGYASMHLEAEKQPDVVQILATKLTPNIERCSLNPVERCKTPPPGVADHIVVQFKTPLSQVPAKHQPDAMVPLQQQQLGKSSSKPAQLRLNCGSNLLESETPPPMTSPQMRKALPKVNLTTIFCSSAPIAIGCPAFSFDPAALSHARSQLLAPDVSVTPPVQKSFSAPTLPHAASLSVSPRFSKQALAAHKRRSRHLSDRSDRSSLGSDEQLSDEDLESGLCSPAGGSPLKCRARLAAQFGGRPLLGNLEESLLQRRLMPKIEVMGFTLQLGASGGFCPTQVNIPAVSYFYELHGETLSTPYLCEIRLPRKGYSVPRSGTVQATLLNPIGTVVRMFVIPYDMRDMPPLHRTFIRQRILAEELSQDQDEGHKVPRSPTVTSTTSKLGHFISAEQMKRLRYSIHLKFQTSRSGRLCLHTDIRLLISRRTDCDTAAAHAKGVLEAPNELVTDTMMPAEPRYSARQESAGRI", "sequence_length": 1297, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "225ab0a71ab4ea8f954976d99b862cd8776b7afb74facbd9e3252dd0ab9f64cc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7JXG9.json", "taxon_id": "7227", "uniprot_accession": "Q7JXG9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-conserved-domain-ipr025261.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025261", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-conserved-domain-ipr025261.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4210-pf13915.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13915", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4210-pf13915.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/chromosome-seg-pf13889.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13889", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/chromosome-seg-pf13889.yaml" } ], "pfam_ids": [ "PF13889", "PF13915" ], "protein_name": "Atos homolog protein B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRHVQAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIVDLNPLGRKGYSVPKVGTVQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVGEEGNANPTHRLLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYELQAVTEAPHNPRYSPLP", "sequence_length": 538, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "114f51a46d21d98c943ca0cef95252ffec90d07fc672be390702641e2df0cb57", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7L5A3.json", "taxon_id": "9606", "uniprot_accession": "Q7L5A3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-c-terminal-ipr033473.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/atos-like-conserved-domain-ipr025261.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025261", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/atos-like-conserved-domain-ipr025261.yaml" } ], "pfam_ids": [ "PF13889", "PF13915" ], "protein_name": "Atos homolog protein B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRHVQAELSPSSEPEAGPSQPPVRQGTLQGGLLMGYSPAGGATSPGVYQVSIFSPSAGASEPPRALKRPAPPTEGPRELKRGPGLGAREGLPPEEPSTVGLLSPEGLGLGLGVASQHFSHHGLCVVEHGGNTTSPWTSGTQSTPWLSSNASFNTLHTRDWAFPDQGGQGCLGETPGPAPSGQLHTLDTDLHNLAQIGGKSPVARVGNGSNPWPRESHGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGETLDVSSEDEGPAPRRRRGTLGCPLAANSSDAKATPFWSHLLPGPKEPVLDPTDCSPMGRRLKGARRLKLSSLRTLRKGPGLLSPPSASPFPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGVVDLTPLGRKGYSVPKVGTIQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVGEEGNASPTHRLLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYELQAVTEAPHNPRYSPLP", "sequence_length": 538, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "016be08e3dc0a42d7eba4cd064eef034ebf61923e2eedf9b3716653037887d0a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BR27.json", "taxon_id": "10090", "uniprot_accession": "Q8BR27", "uniprot_release": "2026_03" } ], "pfam_id": "PF13915", "short_name": "DUF4210", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4211-ipr025451.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025451", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4211-ipr025451.yaml" } ], "pfam_ids": [ "PF13926" ], "protein_name": "Glutamine and serine-rich protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDAHYAPAGFAEPPAPPASAATQPAAPAWAYEARVPAAASSPSCSGSSPSLKASYEDGHPSQSESDVLQRQTFTASHQLPGYATTPQATGMHSSAATELFVAGPLPTTGTLPPPTLSAYQHSSTFSNRNFATTSPLVLQDSSFNTTSNGILSPHDPLLQIKTSQGTVPTALAFERLGSSALSNSVPPQSSTYRSAQESAPHLLQPQFSLLPSTLGGAQQTPQAYNSALFPSSAASIERALLRECSVIKHHQRPSVTQSIQAQLTGSQHPLHSYLSSASIGNFQEPSRQSSLSCSSVRDSTQVSNGVLPQKTPQVSAELAQSYSSVIPSSGYLPSATKVDSCSTKQPLTSTTIPKPQSVIPPVQTLNYSKPLHNQSSVISGQAQIYSTAQLPSLLSVSQSQNYGLVQPHNVPSIVHSQVYRSSRVEKLPSLYKTLTFSGSSQPVTSENQTLSYSSNQQEVLSLVTNENYPAQTRDLPSVSESQNYSSGQSQGLSPVSQTQVSYSSQSQVLSVVSPSESYASGQSLTLTAPSLSYSSASRGQSLPVSTPTPSYTSMHPSPNAQTQGSSAQPQEFLPAVQSSFASSTRGQTLQSSIPSPDPKSYAERKLDSSVYTSSKQDEFPVQKLQALQSQASLESSSQRLPDGEVNAQESVYKTSKADDRYSQSVTRNNSHLEDQVVGVALQGSEQEENMVGSMTQLNQQSGQSNNAVATDLKKATNLMQTPQVRLNTKDLNQQHSLMHKMHEAKVQQQHDQIMSASSQIQIPNPALGQSHQALPHTSVLLDSACDLQILQQAGILQASLGQAKASLQVQRVQSPQQIVHPFLQMDGHIIQSNGEHPQQQLHPHNSDIMKLDLPEPSKPLQQLTTKGPFSEANPHDSKNQFVSLGSICFSEAMLLSDERNILSNVDDILAATAAACGVTPSDFSKSAANETMQDIESSDSKSHYQQSLNVRHVNSDFNSIAASVGKPQSINDISLNGNQVSVSLSSVPTLQSETVLDQPHMETPSQTIPTKVPSAMVGLGQEIQEQSSDPFKKQLTINHESKEDREIAVDSALSNNRNQEFVSNSRSISGDSVVSERDFTLVGDDTGVLVNPRRSTLALLAMPQPGDAASGKTEDEKQDVTYFNLPKEKAKGKEQGKEEEDNQKQLKRSAQCKRQNPRGTDVYVPYTSPSLESCDEGFQHQEKMRQKIKEVEEKQPEVKTGFIASFLDFLKCGPKQQFSTLAVRVPNRTRRSGIQTTRTFCPPPFAKTSPAAQAPSETGGVSLSEKVDSELKTLEQLSSFSSDEEDPGSCGHDIYKNTSAPLTVLDATSDKTKKTVLEALPVATPGASAETAGVAPTASTAVATIKQDLHLTSLTVNTMENANSTESPTAIELDSLPSDQLAKGQDTVAIEGFTDEENIESGGEGQYRERDEFVVKIEDIETFKEALNTGKEPPAIWKVQKALLQKFVPEIRDGQREFAATNSYLGYFGDAKTKYKRIYVKFIENANKKEYVRVCSKKPRNKPSQTIRNIPSKPSSISKTSDPPVSKTTTTKTPSTKPKAKQLKIKAEPPPKKRKKWKEEFSSSQSESSPEVRSSSSEDEGFEPPAPSVTRFLNTRAMKETFKSYMELLVSIALDPDTMQALEKSNDELLLPHMKKIDGMLNDNRKRLLVNLHLDQPFKNALESFPELTVITRDSKAKSGGSAISKIKMNGKAYNKKTLRTSKTTTKSAQEFAVDPEKIQLYSLYHSLHHYKYHVYLICKNEISSVQKKNEDLGQEEIVQLCMKNVKWVEDLFEKFGELLNHVQQKCS", "sequence_length": 1788, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0068ef8142526bc65e3de7f79cbd021c3364884844747eff7d625af51918f76b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A338P6K9.json", "taxon_id": "10090", "uniprot_accession": "A0A338P6K9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4211-ipr025451.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025451", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4211-ipr025451.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4211-pf13926.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4211-pf13926.yaml" } ], "pfam_ids": [ "PF13926" ], "protein_name": "Proline-rich protein 12", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDRNYPSAGFGDPLGAGAGWSYERSAKASLVYGSSRTSHPETDILHRQAYAAPHPLQSYATNHHPAGLSGLFDTGLHHAGSAGPDASVMNLISALESRGPQPGPSASSLLSQFRSPSWQTAMHTPGPTELFISGALPGSSTFPSSSALSAYQHPASFGSRPFPVPSSLSLQDPPFSPPANGLLSPHDVLHLKPSQAPTVPSSLGFERLAGGGVLGPAGLGPAQTPPYRPGPPDPPPPPRHLPTQFNLLASSSAATAAEPSSPQLYNFSGAAPGPPPERALPRQDTVIKHYQRPASAQPPPPPPPAHSLQHYLSCGGSYPSMGHRASLACSPLGGGEPSPGAGEPSKGGPSGATAGAAGRATGPETAGGGAAGGGGGYRPIIQSPGYKTSKGGYGPATGGATRPPPPRSTATPKCQSLGGPAAAYAAGKASGAGGAGSQAYSPGQPQGLLGPQAYGQGFGGGQAQDLSKGPSYSGGPPQPPSGPPPPGLATCQSYSPDQLQGQLYGVQSEPYPGPAAHSQGLPTASPSLSYSTGHSPALSGHGGGWGPSSLGGGGEASPSHIIRPLQSPPATGRPPGVGSPGAPGKYLSSVLASAPFLAPPGASSYAAGAGGYKGKGDGSELLAGPGGSAAERTEDEEFLIQHLLQAPSPPRTSGADGLVGEDGPADAAKGLGGSGGAGGAPGTPYELAKEDPQRYHLQSVIRTSASLDEGATAALELGLGRMKDKKKGPERGGETPEGLATSVVHYGAGAKELGAFLQKSPPPPPPSAQATQPAPHGLLLEAGGPDLPMVLPPPPPQLLPSVLSHAPSPSPSAPKVGVHLLEPATRDGAPQPPPPPPPPMPLQLEAHLRGHGLEPTAPSPRLRPEESLEPPGAMQELLGALEPLPSGPGDPGVGPPNSEGKDPAGAYRSPSPQGTKAPRFVPLTSICFPDSLLQDEERSFFPTMEEMFGGGAADDYGKAGQTEDDGDPKTGAGPPPGPTAYDPYGPYCGGRASGTGPETPGLGLDHNKPPELPSTVNAEPLGLIQSGPHQSAPPPPPPPPPPPPVSEPKGGLTSPIFCSTKPKKLLKTSSFHLLRRRDPPFQTPKKLYAQEYEFEADEDKADVPADIRLNPRRLPDLVSSCRSRPALSPLGDIDFCPPNPGPDGPRRRGRKPTKAKRDGPPRPRGRPRIRPLEGPAMAGPASITTDGAKKPRGRGRGRGRKAEEMGGTRLEPLKPLKIKLSVPKAGEGLGAPSNDVISGVDHNSLDSNLTREKIEAKIKEVEEKQPEMKSGFMASFLDFLKSGKRHPPLYQAGLTPPLSPPKSVPASVPTRGLQPPPPTVPTVPHPAPSGPFGLGGALEAAESEGLGLGCPSPCKRLDEELKRNLETLPSFSSDEEDSVAKNRDLQESISSAISALDDPPLTGPKDTSTPEEPPLDTGPTASGPPPLPSLPSSNSSGTPEPPLLEEKPPPTPPPAPTPQPAPPPPPPPPPVPALPSPTPLVTPVASSPPPPPPPPPPPPALPSPPPPPPPAPTTVPPVAPPEEPPAPSPEDPEPPDARPLHLAKKQETAAVCGETDEEAGESGGEGIFRERDEFVIRAEDIPSLKLALQTGREPPPIWRVQKALLQKFTPEIKDGQRQFCATSNYLGYFGDAKNRYQRLYVKFLENVNKKDYVRVCARKPWHRPPLPVRRSGQTKGPTPVGGNSAPPSKVQAPPPKPETPEKMTSEKPPEPAPEPAVPEPPAPEKPSPPRPVEKEKEKEKEKEKEKERVTRPLRSERATSGRQMRTDRSLATGQSTTSRLPKARPSKVKAEPPPKKRKKWLKEAVGNASAGDGPGGSSSDSESSPGAPSEDERAVPGRLLKTRAMREMYRSYVEMLVSTALDPDMIQALEDTHDELYLPPMRKIDGLLNEHKKKVLKRLSLSPALQDALHTFPQLQVEQTGEGSPEEGAVRLRPAGEPYNRKTLSKLKRSVVRAQEFKVELEKSGYYTLYHSLHHYKYHTFLRCRDQTLAIEGGAEDLGQEEVVQQCMRNQPWLEQLFDSFSDLLAQAQAHSRCG", "sequence_length": 2035, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "858ee4dabd31a10d28bc122e1107be0f231c3c7e83f884d2e26d3aa387213b41", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E9PYL2.json", "taxon_id": "10090", "uniprot_accession": "E9PYL2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4211-ipr025451.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025451", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4211-ipr025451.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4211-pf13926.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4211-pf13926.yaml" } ], "pfam_ids": [ "PF13926" ], "protein_name": "Glutamine and serine-rich protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNFLSTAESRTAQAAASGTTLLPQFRAPSWQTGMHSSAATELFATGPLPSTGTLPPSLSAYQHPTTFSNRNFATTSPLVLQDSTFNTTSNGILSHHDPLLQIKTSQGTVPTALAFERLGSSVLSNSIPPQSSTYRSAQESAPHLLQPQFSLLPSALGGSQQTPQAYSSTLFTSSTASIERALLRECSVIKHHQRPSGTQSIQAQLTGSQHSLHSYLSNSSVVNFQETTRQSSLSCSPIGDSTQVSNGGLQQKTSQVSVELAQSYSSAIPSSGYPPSTTKIKSCSTEQPLTSTKTPKPQSIIPPVQTLSYSKPLHNQSSVISGQAQIYSTAQLPSLLSVSQSQNYGLVQPHNVPSIVHSQVYRSSKVEKLPPLYKTLTFSGSSQTVTPENQTLNYSSNQQEVLSSVTNENYPAQTRDLSSVSQSQSYSSGHSQGLSPVSQTQVSYSSQSQVLSVVSLSESYASGESLTLTAPSLSYSSASRAQNLPDSSPTQNYISMHSSQNVQTQESSSPQSQKFLPAVQSSSFASSTHCQTLQNNITSPDPKSYAERKLDSDVYPSSKQEDGFPMQELQVLQPQASLESSTQRLSDGEINAQESTYKVSKADDRYSQSVIRSNSRLEDQVIGVALQASKKEESVVGSVTQLNQQIGQVNNAATLDLKNSTNLIQTPQIRLNTKDLKQQHPLILKVHESKVQEQHDQIINASSQIQIPNHALGHGHQASLPNTQVLLDSACDLQILQQSILQAGLGQVKASLQAQRVQSPQQIVHPFLQMEGHVIQSNGDHSQQQLHPQNSEVMKMDLSESSKPLQQHLTTKGHFSETNQHDSKNQFVSLGSMCFPEAVLLSDERNILSNVDDILAATAAACGVTPTDFSKSTSNETMQAVEDGDSKSHFQQSLDVRHVTSDFNSMTATVGKPQNINDTSLNGNQVTVNLSPVPALQSKMTLDQQHIETPGQNIPTKVTSAVVGPSHEVQEQSSGPFKKQSATNLESEEDSEAPVDSTLNNNRNQEFVSSSRSISGENATSESEFTLGGDDSGVSMNPARSALALLAMAQSGDAVSVKIEEENQDLMHFNLQKKRAKGKGQVKEEDNSNQKQLKRPAQGKRQNPRGTDIYLPYTPPSSESCHDGYQHQEKMRQKIKEVEEKQPEVKTGFIASFLDFLKSGPKQQFSTLAVRMPNRTRRPGTQMVRTFCPPPLPKPSSTTPTPLVSETGGNSPSDKVDNELKNLEHLSSFSSDEDDPGYSQDAYKSVSTPLTTLDATSDKKKKTEALQVATTSPTANTTGTATTSSTTVGAVKQEPLHSTSYAVNILENISSSESSKPIELDGLPSDQFAKGQDTVAIEGFTDEEDTESGGEGQYRERDEFVVKIEDIETFKEALKTGKEPPAIWKVQKALLQKFVPEIRDGQREFAATNSYLGYFGDAKSKYKRIYVKFIENANKKEYVRVCSKKPRNKPSQTIRTVQAKPSSSSKTSDPLASKTTTTKAPSVKPKVKQPKVKAEPPPKKRKKWKEEFSSSQSDSSPEIHTSSSDDEEFEPPAPFVTRFLNTRAMKETFKSYMELLVSIALDPDTMQALEKSNDELLLPHMKKIDGMLNDNRKRLLLNLHLDQSFKNALESFPELTIITRDSKAKSGGTAISKIKMNGKAYNKKTLRTSKTTTKSAQEFAVDPEKIQLYSLYHSLHHYKYHVYLICKDEISSVQKKNEDLGQEEIVQLCMKNVKWVEDLFEKFGELLNHVQQKCS", "sequence_length": 1735, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e4864f297104303f7d9eed31f353c78605f09ef9d1a2399b29c77733dc6f3044", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q2KHR3.json", "taxon_id": "9606", "uniprot_accession": "Q2KHR3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4196-pf13846.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4196-pf13846.yaml" } ], "pfam_ids": [ "PF13846", "PF13926" ], "protein_name": "Coiled-coil domain-containing protein 82", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVHARRHETRKNSKTQVPEQKSRVDWRRTKRSVSQLFDSDEELDSDEEIGSDEDLDGGESIDSDGKLDISKDSGINEIPEKETELNLIKVESERSNSKCHMNTSSSSADEEEMNKTKHNDLPDDEAHPGQAEGHHNKLTGQVLEEDVEDECIKPGKRKRLSSVMYDSDESDDSDILVRKASAKHPRRVVEDECSSLEMERETPEKSPAARKREYHQKLQELCERSRQKQRHNSGRNCESSEKDSCSSTDEDEDDDDYGDAENEDDYMIDDFVVGDEEADEENKNQGENLTTSQLKLVKQNSLYSFSDHYTHFERVVKALLINAFDGSFLETLYAGKRKKSYAQDMLTSLHYLDDRFIQPRLESLVSRSRWREQYKERVESYSDLSIHWKSPENCGCQACGLHRYCKFSVRLSGKLYNTRTMETDDFMSRDKQVFIVGRICAERTKIYHKLKHFKFKLYQDCCSIAYTKEVGDEQVKDTVKRLFCQLKKSGWIRKKHGQLEEYLNSADYFQDEKFKL", "sequence_length": 516, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1a750fb5604371328b962f8fd0683c03068d7004634e5a4f84f854ee363acc64", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q66H73.json", "taxon_id": "10116", "uniprot_accession": "Q66H73", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coiled-coil-domain-containing-protein-82-ipr025244.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025244", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coiled-coil-domain-containing-protein-82-ipr025244.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4211-ipr025451.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025451", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4211-ipr025451.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4196-pf13846.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4196-pf13846.yaml" } ], "pfam_ids": [ "PF13846", "PF13926" ], "protein_name": "Coiled-coil domain-containing protein 82", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVHVRRHETRKNSKTQKPEQKSRVDWHRTKRSISQLFDSDEELDSNEELDSDEEHDSGESIDSDEELDISKKSDINELPEKETELKLIKVESQGSNSKHLTNTSNSSADEEQLKETKHNDLPDDEAHPGQAENHHNRHTGQILEEDMEDEYIKPGKRKRLSSVMYDSDESDDSDILIRKASAKHPRRVVEDECSSLEMEQETPEKSSAARKREYHQKLQELSERSRQRRRRNSGRNFEDSEKDSCSGTGEEDEDEDEDDYRYDEDGDDYMIDDFVVRNEEGDDENSNQQGENLTTSQLKLVKQNSLYSFSDHYTHFERVVKALLINAFDESFLETLYAGTRKKSYAKDMLTSLHYLDNRFIQPRLESLVSRSRWKEQYKERVESYSNLNILSKSPENCVCQACGLHRHCKFSVHLSGKLYNIRTMETDDFMSHDKQVFTVGRICVERTRIYHKLKHFKFKLYQDCCLIAKPEEVGDEQVKDTVKRVFNHSKERGWIRKKYDQLQNFLNSADYFQDEKF", "sequence_length": 518, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b87fb4187ab57ecdde3056ec7c6ec3d4312a9e879b56c1ef403af35fcb835de8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PG04.json", "taxon_id": "10090", "uniprot_accession": "Q6PG04", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/coiled-coil-domain-containing-protein-82-ipr025244.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025244", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/coiled-coil-domain-containing-protein-82-ipr025244.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4211-ipr025451.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025451", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4211-ipr025451.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4196-pf13846.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4196-pf13846.yaml" } ], "pfam_ids": [ "PF13846", "PF13926" ], "protein_name": "Coiled-coil domain-containing protein 82", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIHVRRHETRRNSKSHVPEQKSRVDWRRTKRSSISQLLDSDEELDSEEFDSDEELDSDESFENDEELDSNKGPDCNKTPGSERELNLSKIQSEGNDSKCLINSGNGSTYEEETNKIKHRNIDLQDQEKHLSQEDNDLNKQTGQIIEDDQEKHLSQEDNDLNKQTGQIIEDDLEEEDIKRGKRKRLSSVMCDSDESDDSDILVRKVGVKRPRRVVEDEGSSVEMEQKTPEKTLAAQKREKLQKLKELSKQRSRQRRSSGRDFEDSEKESCPSSDEVDEEEEEDNYESDEDGDDYIIDDFVVQDEEGDEENKNQQGEKLTTSQLKLVKQNSLYSFSDHYTHFERVVKALLINALDESFLGTLYDGTRQKSYAKDMLTSLHYLDNRFVQPRLESLVSRSRWKEQYKERVENYSNVSIHLKNPENCSCQACGLHRYCKYSVHLSGELYNTRTMQIDNFMSHDKQVFTVGRICASRTRIYHKLKHFKFKLYQECCTIAMTEEVEDEQVKETVERIFRRSKENGWIKEKYGQLEEYLNFADYFQEEKFEL", "sequence_length": 544, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "63ae2897676690365b3d7318520206b13565d99465df18278ca41ff062111d96", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N4S0.json", "taxon_id": "9606", "uniprot_accession": "Q8N4S0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4211-ipr025451.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025451", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4211-ipr025451.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4211-pf13926.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4211-pf13926.yaml" } ], "pfam_ids": [ "PF13926" ], "protein_name": "Proline-rich protein 12", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDRNYPSAGFGDPLGAGAGWSYERSAKASLVYGSSRTSHPETDILHRQAYAAPHPLQSYATNHHPAGLSGLFDTGLHHAGSAGPDASVMNLISALESRGPQPGPSASSLLSQFRSPSWQTAMHTPGPTELFISGALPGSSTFPSSSALSAYQHPASFGSRPFPVPSSLSLQDPPFSPPANGLLSPHDVLHLKPSQAPTVPSSLGFERLAGGGVLGPAGLGPAQTPPYRPGPPDPPPPPRHLPTQFNLLASSSAAAAAAEQSSPQLYNFSGAAPGPPPPERALPRQDTVIKHYQRPASAQPPPPPPPAHALQHYLSCGGSYPSMGHRANLACSPLGGGEPSPGAGEPSKAGPSGATAGASGRATGPEAAGGGGAGGGGGGYRPIIQSPGYKTGKGGYGAAAGGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSPGQPQGLLGPQAYGQGFGGGQAQDLSKAPSYSGGPPQPPSGPPPPGLATCQSYSPDQLQGQLYGVQGEPYPGPAAHSQGLPTASPSLSYSTGHSPALSGHGGGWGPSSLGGGGEASPSHIIRPLQSPPATGRPPGVGSPGAPGKYLSSVLASAPFLAPPGAGSYAAGAGGYKGKGDGSELLAGPGGPPAERTEDEEFLIQHLLQAPSPPRTSGADGLVGEDGAADASKGLGGSGGAGGPPGTPYELAKEDPQRYHLQSVIRTSASLDEGATAALELGLGRLKEKKKGPERGGETPEGLATSVVHYGAGAKELGAFLQKSPPPPPPTAQSTQPTPHGLLLEAGGPDLPLVLPPPPPQLLPSVLSHAPSPSPSASKVGVHLLEPATRDGAPQPPPPPPPPPPPMPLQLEAHLRSHGLEPAAPSPRLRPEESLDPPGAMQELLGALEPLPPAPGDTGVGPPNSEGKDPAGAYRSPSPQGTKAPRFVPLTSICFPDSLLQDEERSFFPTMEEMFGGGAADDYGKAGPPEDEGDPKAGAGPPPGPPAYDPYGPYCPGRASGAGPETPGLGLDPNKPPELPSTVNAEPLGLIQSGPHQAAPPPPPPPPPPPAPASEPKGGLTSPIFCSTKPKKLLKTSSFHLLRRRDPPFQTPKKLYAQEYEFEADEDKADVPADIRLNPRRLPDLVSSCRSRPALSPLGDIDFCPPNPGPDGPRRRGRKPTKAKRDGPPRPRGRPRIRPLEVPTTAGPASASTPTDGAKKPRGRGRGRGRKAEEAGGTRLEPLKPLKIKLSVPKAGEGLGTSSGDAISGTDHNSLDSSLTREKIEAKIKEVEEKQPEMKSGFMASFLDFLKSGKRHPPLYQAGLTPPLSPPKSVPPSVPARGLQPQPPATPAVPHPPPSGAFGLGGALEAAESEGLGLGCPSPCKRLDEELKRNLETLPSFSSDEEDSVAKNRDLQESISSAISALDDPPLAGPKDTSTPDGPPLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPPPPPAAAPLAAPPEEPAAPSPEDPELPDTRPLHLAKKQETAAVCGETDEEAGESGGEGIFRERDEFVIRAEDIPSLKLALQTGREPPPIWRVQKALLQKFTPEIKDGQRQFCATSNYLGYFGDAKNRYQRLYVKFLENVNKKDYVRVCARKPWHRPPVPVRRSGQAKNPVSAGGSSAPPPKAPAPPPKPETPEKTTSEKPPEQTPETAMPEPPAPEKPSLLRPVEKEKEKEKVTRGERPLRGERATSGRQTRPERSLATGQPATSRLPKARPTKVKAEPPPKKRKKWLKEAGGNATAGGGPPGSSSDSESSPGAPSEDERAVPGRLLKTRAMREMYRSYVEMLVSTALDPDMIQALEDTHDELYLPPMRKIDGLLNEHKKKVLKRLSLSPALQDALHTFPQLQVEQSGEGSPEEGAVRLRPAGEPYNRKTLSKLKRSVVRAQEFKVELEKSGYYTLYHSLHHYKYHTFLRCRDQTLAIEGGAEDLGQEEVVQQCMRNQPWLEQLFDSFSDLLAQAQAHSRCG", "sequence_length": 2036, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "003bf485a4e2001764b0df5c36fb4f03bf1290502acdf49032b4508d0aca6a60", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ULL5.json", "taxon_id": "9606", "uniprot_accession": "Q9ULL5", "uniprot_release": "2026_03" } ], "pfam_id": "PF13926", "short_name": "DUF4211", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13937", "short_name": "DUF4212", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4213-ipr025251.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4213-ipr025251.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/putative-heavy-metal-chelation-domain-ipr007161.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007161", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/putative-heavy-metal-chelation-domain-ipr007161.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf364-pf04016.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04016", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf364-pf04016.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4213-pf13938.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4213-pf13938.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-40-50-11590-3-40-50-11590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.50.11590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-40-50-11590-3-40-50-11590.yaml" } ], "pfam_ids": [ "PF04016", "PF13938" ], "protein_name": "Uncharacterized protein MJ0500", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFMIIEEIKERALNLLSEKEEDFKVIDFSFALPYSYVLIESNGKKALGVAMTLLEEYRGHGNRKDLNINKNLEEFINMADSFDIVERTLGVAAINAVSQYYFNFEANGKDAAELVLNRDDIKKIAFVGNMIPVVNMLKKSEKFDIYVFERSPSLLMDGVLSDAFEYRLLPEMDAVFISGTTLLNDTLDFVLDRAKNAKLKILVGPTAQSLPELFKGFGITHIASTKIIDVDKALLYLKFASSSMLFKGASKKYTMEVE", "sequence_length": 259, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "50c270e8bebda4dd3f042c931b8a157f9789377eee436a4a62b1e32d76ec064b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57923.json", "taxon_id": "243232", "uniprot_accession": "Q57923", "uniprot_release": "2026_03" } ], "pfam_id": "PF13938", "short_name": "DUF4213", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13946", "short_name": "DUF4214", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13948", "short_name": "DUF4215", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13952", "short_name": "DUF4216", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ctt-spb4-pf23681.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23681", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ctt-spb4-pf23681.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF13959", "PF23681" ], "protein_name": "ATP-dependent rRNA helicase spb4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPKPPSGTSSRAWDAVTPALSEWVLEAMSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPIKKHHIGAIIISPTRELASQIYNVLSSLLAFHPPSAAAINPSEDDDAPRPKFPSSTLKVVPQLLLGGSTTPAEDLSTFLKRSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKETLQNILRRLPKQRRTGLFSASVSEAVDQIVRVGLRNPVKVMVKVKGGSGVDDKRTPASLQMTYLTTPPSHKFAALKRILSSVQPTPLKTIFFVSTCSGVDYLSAILPLLLGDDFLLIPLHGKHQANVRQKNFNRFINSHDPAILLTTDVAARGLDIPSVDLVVQIDPPSDPKSFIHRCGRAGRAGRRGLSVVLLHPGREEDYVSFLEVRKTPVVPFSPLITFSDADAAAATATARKAVLADRALHDRGQKAFVSWFRSYSKHQASSIFRVSDLDWEALGKAWGLLKLPKMPELRNFTGDKTLGVSLDWNNYAYKDKQREKRRKELLQEAAESGATQSTSNKRRATESVAWSQQAESKNKKLKRREQKKSKHEKARWEKMTEEEKQKVLETEKMVEELRKKNEEERRLRRAAAKAAGAKADGDDEEEFQGFD", "sequence_length": 640, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f81d44bc566f196bf5f58f07d69f810aec36e4a691922b324900268f31d541f9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1D699.json", "taxon_id": "331117", "uniprot_accession": "A1D699", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ctt-spb4-pf23681.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23681", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ctt-spb4-pf23681.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF13959", "PF23681" ], "protein_name": "ATP-dependent rRNA helicase SPB4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQTNKGSLLWENLRVDLEPWLKDAIRSLNYPTMTPVQASTIPLLSGNKDVIVEAVTGSGKTLAFAIPVLQKVSKRLYQVPEGEEKPEPVKRGHMLAIVMAPTRELAKQIQMVFDKVLELLPEEDSYEPRIKTQLLVGFLGNVREDLDSYQENRPQILIATPGRLLDFMSLQIVKTSSLEIVILDEADKLLDMSFETDVIKILKMLPKQRRTGLFSATISAAGDTIFRTGMNNPVKLQVKTKNFLGEQNNAPTSLQLSYMMIEPEHKLTTMLQMLRDNQFKKAIVYFPTCTSVKHFYQMLSKLCKSSANDIDISALLFFSLHGQLTTKSRLNTLEKFTEGNDESKKYILMATDVAARGIDIPDVDLVIQIDPPTDPSVFLHRCGRTGRANKVGRAIVMLNNDTQEEDYVGFMEVKSVFMTKIDPPEDKDNHSFHNKFQKKLRKYMLEDRARHELAVKSYVGFVRYYSKHIASLIFRLASLDYIAIAKMYGLLRLPKMPESRYIENEKMPEDGWLGEVVDMDTYAYLDKSAEKARLENLEKDKLAKAENAKRRKELKVKNEAWSSKTEKRETKLERKEKMKRKREAIEKQLEAEQERGGLDEEEVKEDWKDLVRKNKKKQKSNGGGGGGGVLQGSFDDL", "sequence_length": 637, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d04a29bd820e5468e7e7ef426af50d33130611937546a69053d17d93fe62944", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5E2I8.json", "taxon_id": "379508", "uniprot_accession": "A5E2I8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ctt-spb4-pf23681.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23681", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ctt-spb4-pf23681.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF13959", "PF23681" ], "protein_name": "ATP-dependent rRNA helicase SPB4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKSLEWDNLGFSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNYCVVNPAEKLQLLVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITFLNEGREEDFIPFMQVKNVELEELDLEVKGITTNFYEDFRNWILEDRDRFDKGVKAYVAFIKYYSNHSATSIFRLQSLDYVGIAKLYGLFRLPRMPEITKYLATEKQEGIFPGNWLVDPPVNMDEYKYKDKKREKERQETLKNISLINDKKKLKSELKKKNLAWSDKTLTKERKLERKEKMSLKRKAIEEELKAEELDENAEEERIKEDWKEIVLQNKRKKVSSKAIQGNFDDL", "sequence_length": 606, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fe5a50bb0c0fcdb1955b733f1b8f85e0aecc4971787ef766be7277a7ab81a033", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P25808.json", "taxon_id": "559292", "uniprot_accession": "P25808", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cte-spb4-pf13959.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13959", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cte-spb4-pf13959.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/dead-atp-helicase.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00039", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/dead-atp-helicase.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF13959" ], "protein_name": "Probable ATP-dependent RNA helicase DDX10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKTANSPGSGARPDPVRSFNRWKKKHSHRQNKKKQLRKQLKKPEWQVERESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQLLQKKVPVKEIKINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLMKDKEVFDVSKLPIPEYALSLGLAVAPRVRFLQKMQKQPTKELVRSQADKVIEPRAPSLTNDEVEEFRAYFNEKMSILQKGGKRLEGTEHRQDNDTGNEEQEEEEDDEEEMEEKLAKAKGSQAPSLPNTSEAQKIKEVPTQFLDRDEEEEDADFLKVKRHNVFGLDLKDEKTLQKKEPSKSSIKKKMTKVAEAKKVMKRNFKVNKKITFTDEGELVQQWPQMQKSAIKDAEEDDDTGGINLHKAKERLQEEDKFDKEEYRKKIKAKHREKRLKEREARREANKRQAKAKDEEEAFLDWSDDDDDDDDGFDPSTLPDPDKYRSSEDSDSEDMENKISDTKKKQGMKKRSNSEVEDVGPTSHNRKKARWDTLEPLDTGLSLAEDEELVLHLLRSQS", "sequence_length": 875, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d24eb73e2a96aee911c3c92148337fa5a8255b62c145edcd9d4c1727ac854713", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q13206.json", "taxon_id": "9606", "uniprot_accession": "Q13206", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cte-spb4-pf13959.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13959", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cte-spb4-pf13959.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF13959" ], "protein_name": "ATP-dependent RNA helicase DDX55", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEHVTEGSWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKMKYKRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEESYINFLAINQKCPLQEMKPQRNTADLLPKLKSMALADRAVFEKGMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFVPVDVNTDTIPFKDKIREKQRQKLLEQQRREKTENEGRRKFIKNKAWSKQKAKKEKKKKMNEKRKREEGSDIEDEDMEELLNDTRLLKKLKKGKITEEEFEKGLLTTGKRTIKTVDLGISDLEDDC", "sequence_length": 600, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "46442fe990309a7ae743099a011abc55c1aa332d19da4659d9174d14dbe45ba4", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NHQ9.json", "taxon_id": "9606", "uniprot_accession": "Q8NHQ9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cte-spb4-pf13959.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13959", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cte-spb4-pf13959.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF13959" ], "protein_name": "ATP-dependent DNA helicase DDX31", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPDLASQRHSESFPSVNSRPNVILPGREGRREGLPPGGGTRGSLVPTRPVPPSPAPLGTSPYSWSRSGPGRGGGAGSSRVPRGVPGPAVCAPGSLLHHASPTQTMAAADGSLFDNPRTFSRRPPAQASRQAKATKRKYQASSEAPPAKRRNETSFLPAKKTSVKETQRTFKGNAQKMFSPKKHSVSTSDRNQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIKMEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQTVFEDYVHSSERRVSWAKKALQSFIQAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPRNLSALTRKKRKAHVKRPDLHKKTQSKHSLAEILRSEYSSGMEADIAKVKKQNAPGEPGGRPLQHSLQPTPCFGRGKTLKWRKTQKGVQRDSKTSQKV", "sequence_length": 851, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d83034a7f996dda9e821ad0875b3680e13d64ecb55f1321e11e9d728c92e9fe7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H8H2.json", "taxon_id": "9606", "uniprot_accession": "Q9H8H2", "uniprot_release": "2026_03" } ], "pfam_id": "PF13959", "short_name": "CTE_SPB4", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13960", "short_name": "DUF4218", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13961", "short_name": "DUF4219", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13968", "short_name": "DUF4220", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13970", "short_name": "DUF4221", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13973", "short_name": "DUF4222", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4223-pf13978.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4223-pf13978.yaml" } ], "pfam_ids": [ "PF13978" ], "protein_name": "Uncharacterized protein YhfL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKFIKVALVGAVLATLTACTGHIENRDKNCSYDYLLHPAISISKIIGGCGPTAQ", "sequence_length": 55, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7c8e58f4043a353552a584e571597a56b7faabc5088757af1ae65c982232855a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64627.json", "taxon_id": "83333", "uniprot_accession": "P64627", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4223-pf13978.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4223-pf13978.yaml" } ], "pfam_ids": [ "PF13978" ], "protein_name": "Uncharacterized protein YhfL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKFIKVALVGAVLATLTACTGHIENRDKNCSYDYLLHPAISISKIIGGCGPTAQ", "sequence_length": 55, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7c8e58f4043a353552a584e571597a56b7faabc5088757af1ae65c982232855a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64629.json", "taxon_id": "83334", "uniprot_accession": "P64629", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4223-pf13978.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF13978", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4223-pf13978.yaml" } ], "pfam_ids": [ "PF13978" ], "protein_name": "Uncharacterized protein YhfL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKFIKVALVGAVLATLTACTGHIENRDKNCSYDYLLHPAISISKIIGGCGPTAQ", "sequence_length": 55, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7c8e58f4043a353552a584e571597a56b7faabc5088757af1ae65c982232855a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64630.json", "taxon_id": "623", "uniprot_accession": "P64630", "uniprot_release": "2026_03" } ], "pfam_id": "PF13978", "short_name": "DUF4223", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13986", "short_name": "DUF4224", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF13988", "short_name": "DUF4225", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4227-pf14004.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14004", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4227-pf14004.yaml" } ], "pfam_ids": [ "PF14004" ], "protein_name": "Uncharacterized membrane protein YqzK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGRFLKTAVDALKVFILFTGFTALFYYAMIWVNQEYENYHRYDKPEGSAVKVVEMDQDEKGGWFDRLIFFYQNGE", "sequence_length": 75, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2f58c2279a7ce79cba90640dea73c4e428f4b1ea410f7f77236fd4ad61d32008", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0H451.json", "taxon_id": "224308", "uniprot_accession": "C0H451", "uniprot_release": "2026_03" } ], "pfam_id": "PF14004", "short_name": "DUF4227", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/padre-pf14009.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14009", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/padre-pf14009.yaml" } ], "pfam_ids": [ "PF14009" ], "protein_name": "Uncharacterized protein At1g66480", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEPNQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSDVTIGRSDGGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIYMERSGELGGGRGGVDGRRELGSGEIKAREKQVSFAGEGGRELPVLWSRSGK", "sequence_length": 225, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "be760ed1ecae12c581f127a307cb8f718e95b1d2e735df0142f3b6c3f77dd059", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NLC8.json", "taxon_id": "3702", "uniprot_accession": "Q6NLC8", "uniprot_release": "2026_03" } ], "pfam_id": "PF14009", "short_name": "PADRE", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14012", "short_name": "DUF4229", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14014", "short_name": "DUF4230", "status": 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"canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4234-pf14018.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14018", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4234-pf14018.yaml" } ], "pfam_ids": [ "PF14018" ], "protein_name": "Uncharacterized protein AF_1598", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVTKRSLLKLYLLGIVTLGIYFIYWLVMVKRELNSLGANIPTCWLLIIPIANIYWLYKFAEGFVKVLKPGESAVLYFLLFWLVSIIMPAIVQSELNKLAERGG", "sequence_length": 103, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e12f37aa3e7a0eb342698f247f2fc24da7b3692386b429e6da8f64d402382231", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O28674.json", "taxon_id": "224325", "uniprot_accession": "O28674", "uniprot_release": "2026_03" } ], "pfam_id": "PF14018", "short_name": "DUF4234", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14019", "short_name": "DUF4235", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14020", "short_name": "DUF4236", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14021", "short_name": "TNT", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14022", "short_name": "DUF4238", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14023", "short_name": "Bestrophin-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14024", "short_name": "DUF4240", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14025", "short_name": "DUF4241", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14026", "short_name": "SCO4226-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces chromofuscus", "origins": [ { "cited_uniprot_accession": "K4MZR0", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/alkaloids/indigoidine.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:79296", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/alkaloids/indigoidine.yaml" } ], "pfam_ids": [ "PF13419", "PF14027" ], "protein_name": "Tyrosine-protein kinase PtkA", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MFDLDGTLVDSPRAIVEAFAAAFWAMGLAPRDPADIRATIGLPLEQAFGKLLGVPQNDPSVADGVARYQEAFRTLILPRAHSLVFPGVPEGLAELRRHGVVVTVATSKFHASADALLTAAGLRDHVTTLVGADDVTRPKPHPESGLLILGELGARPEHAVMVGDTTHDLKMAAAAGLASVAVTYGVHERAELETASPTHVADTFAQAVEQILAVLPADGGPEDTGTVESLLDDSTYHIEFNGHLTNHIKHAVVALAGLGVDPGRIKAYHDNYIALTPYGCRVEPARPPQRLIDDGNWLEHLGRREDFAAYCAFFDRRERELGMAGLLRQYVPRLLAGWAGALQHATIHLGWALDAGNRRMAIEGIAYLAFAYVDCHPERAVPSEAPGTDKPGDSLLSIARHWEENGPRLGAWVEDLVGTTSADIHPELLRSGLQYRIARMLGEGHPLMYGTPSWIAAQDPDTSWEQLAYLVTVLYLTEPGDFLLLHLVTALHAMRHIADALPAEQQRRAVACYWTGILGVLFSRGHFVAPSKLTAIDSLFDTALDDLDDPRWAREWDWHIARAVEEEEEHNAKLVYVMRELWRGSGGRSVYRVAAGQFTTTPELPATFEQPPVD", "sequence_length": 614, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ba60258fc55b02fbcf37aeec9aea2c0e0df42a17cec426c65694c121a5e0323a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/K4MZR0.json", "taxon_id": "42881", "uniprot_accession": "K4MZR0", "uniprot_release": "2026_03" } ], "pfam_id": "PF14027", "short_name": "Questin_oxidase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14029", "short_name": "DUF4244", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14030", "short_name": "DUF4245", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14033", "short_name": "DUF4246", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4247-pf14042.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14042", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4247-pf14042.yaml" } ], "pfam_ids": [ "PF14042" ], "protein_name": "Uncharacterized protein MT2674", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRNRLFLVAGSLAVAAAVSLISGITLLNRDVGSYIASHYRQESRDVNGTRYLCTGSPKQVATTLVKYQTPAARASHTDTEYLRYRNNIVTVGPDGTYPCIIRVENLSAGYNHGAYVFLGPGFTPGSPSGGSGGSPGGPGGSK", "sequence_length": 143, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9f711e85943d905abc48f45d1d7253554e570441fc783606880b2a72aadd70fc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WL68.json", "taxon_id": "83331", "uniprot_accession": "P9WL68", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4247-pf14042.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14042", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4247-pf14042.yaml" } ], "pfam_ids": [ "PF14042" ], "protein_name": "Uncharacterized protein Rv2599", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRNRLFLVAGSLAVAAAVSLISGITLLNRDVGSYIASHYRQESRDVNGTRYLCTGSPKQVATTLVKYQTPAARASHTDTEYLRYRNNIVTVGPDGTYPCIIRVENLSAGYNHGAYVFLGPGFTPGSPSGGSGGSPGGPGGSK", "sequence_length": 143, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9f711e85943d905abc48f45d1d7253554e570441fc783606880b2a72aadd70fc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WL69.json", "taxon_id": "83332", "uniprot_accession": "P9WL69", "uniprot_release": "2026_03" } ], "pfam_id": "PF14042", "short_name": "DUF4247", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14053", "short_name": "DUF4248", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14054", "short_name": "DUF4249", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14056", "short_name": "DUF4250", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14059", "short_name": "DUF4251", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14060", "short_name": "DUF4252", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14062", "short_name": "DUF4253", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14063", "short_name": "DUF4254", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14065", "short_name": "Pvc16_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14066", "short_name": "DUF4256", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4257-pf14074.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14074", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4257-pf14074.yaml" } ], "pfam_ids": [ "PF14074" ], "protein_name": "Uncharacterized protein YtvB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKMLHQVLIACVIGGIMGILGHVKKRGRLEKPRMTKRFIYLGFLEDWFIGMTASILLVLSADPDSGIQLVILSIISGYGGEAVLRSFDFVRELNSGGEPAESKRQTKTPPE", "sequence_length": 111, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "977863bdfe23981dee21042b3c561bca472c4972304e4c1630be8fbe320f3291", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34881.json", "taxon_id": "224308", "uniprot_accession": "O34881", "uniprot_release": "2026_03" } ], "pfam_id": "PF14074", "short_name": "DUF4257", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14076", "short_name": "DUF4258", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14078", "short_name": "DUF4259", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, 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"2026_03" } ], "pfam_id": "PF14082", "short_name": "SduA_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4264-pf14084.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14084", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4264-pf14084.yaml" } ], "pfam_ids": [ "PF14084" ], "protein_name": "Uncharacterized protein YpmA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESKIEILSTINVEHSDDLYKIVDTLNRTLKRDNLMFGLALDEENKNQAVFTIYRT", "sequence_length": 56, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0ef772fbf5f3207fdf22641366dfbe83061d6e3ff6a41c8dfb97a5d985c5b885", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54395.json", "taxon_id": "224308", "uniprot_accession": "P54395", "uniprot_release": "2026_03" } ], "pfam_id": "PF14084", "short_name": "DUF4264", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14085", "short_name": "DUF4265", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14086", "short_name": "DUF4266", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14087", "short_name": "DUF4267", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14088", "short_name": "DUF4268", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14091", "short_name": "DUF4269", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bamh-pf14092.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14092", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bamh-pf14092.yaml" } ], "pfam_ids": [ "PF14092" ], "protein_name": "Outer membrane protein assembly factor BamH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRYLLLVFSLMALLTVACDDDLSPIGGSIQPPSDPVSARVDTLEFSVKTIPMGDIYNRTNYTLLGDLTDPEYGDLKADYIMQFKSPRNFKFKYPPKDGKIDSVKLSINYDSWAGDSTSIMKVSIYKINKAIPPSYYSTQELASLLDETQIIASQTFKAGNDSAFHRVRIPLPNEIGQKIYDLSVNNPSVFDTQESFYNNVLGGLYVTTTTGTGVVLSVYNTQMAIFYSYKVAADSTATASETFVNTSESYQVNHIKNSQISHLLQENDSLSCVKSPAGVMTQLTISKEQFTDAFTSNLSSSLAWQIGEAQFNISASKPSEGLMLSPPSYLLLLPQDSVRNFFEQEQTELMQPRTAFLSTIYNIKKREYRFSNISRLLMEHIKNNTEKTPEGKPYITKDLVLVLLPVKRQVAGASNSLYTSQLNNFMFPSGVKLQLGKKNKTARIGVYSMTYTDN", "sequence_length": 455, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7023cb561c20262101ef91aea56097327f51c48e769e61f432130c834487db5e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B2RLK9.json", "taxon_id": "431947", "uniprot_accession": "B2RLK9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bamh-pf14092.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14092", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bamh-pf14092.yaml" } ], "pfam_ids": [ "PF14092" ], "protein_name": "Outer membrane protein assembly factor BamH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKAKYALIALLAITFFGCDDNTGGLGLGMFPGNDQNIKGKLSTFDVTTESVKTGDIYAKTNIGYIGKFTDETFGTYQAGFLAQLNCPDGLTFPEPYKEVTDASGNVISATGRMVVDDKDPENKDVTFIKDGNQIIGNIRAVELYLWYDSYFGDSLTACRLSVYELGGNGKETLNLDNAYYTDINPEDFYDSQNILGTKAYTAVDLSVKDSIRNLSTYVPSVHIAFKEDIATRVGGNILTAARKAKNADKEFNSQLFREAFQGIYVKSDYGDGTVLYIDQPQMNVVYKCYATDSITGKKLQKKDGSGKDSTYYSYRVFATTREVIQANQLKNDPERIDALIKEDKNTYLKSPAGIFTEATLPISDIQNELTGDTLNAVKLTFTNYNQTGDKKFGMAIPSTVMLVRKKFQDSFFKDNKLSDGVSSYLTSHTSSTNQYVFSNITKLVNACIAEKEEAKKNAGSSWDETKWLQENPDWNKVVLIPVLVTYDSSNTTTGQANIIRIQHDLKPGYVRLKGGSLGKTNPDYKLKLEVISTDFGLTTKSN", "sequence_length": 542, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a6dd61ea8d88ae4be2c86e731ef554755fff099ddd61e070c096f9e89c4f9399", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q89ZS0.json", "taxon_id": "226186", "uniprot_accession": "Q89ZS0", "uniprot_release": "2026_03" } ], "pfam_id": "PF14092", "short_name": "BamH", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14093", "short_name": "DUF4271", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14094", "short_name": "DUF4272", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14096", "short_name": "DUF4274", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14100", "short_name": "DUF6807", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14101", "short_name": "DUF4275", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14103", "short_name": "DUF4276", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14104", "short_name": "DUF4277", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14105", "short_name": "DUF4278", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14106", "short_name": "DUF4279", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14107", "short_name": "DUF4280", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/aba4-like-pf14108.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14108", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/aba4-like-pf14108.yaml" } ], "pfam_ids": [ "PF14108" ], "protein_name": "Protein MAO HUZI 4, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAALLLLSSAARVGVAAPLALRQQRPVVLPGGQLRTGSGAGAASAWAARPLRPELAAVSRPAVPARGRAPLFRPRAWMASSQIASSAFTWGTIAVLPFYTLMVVAPNADVTKRAVDSSAPYVALGILYAYLLYLSWTPDTLRAMFASKYWLPELTGIVRMFASEMTVASAWIHLLAVDLFAARQVYHDGIKNNIETRHSVSLCLLFCPIGIATHVLTKVLAGSIGRSH", "sequence_length": 228, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "323279a94b33e4b2505a74d173d04d1330738231aec9aa13df0c156ad71a6692", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5ZEG0.json", "taxon_id": "39947", "uniprot_accession": "Q5ZEG0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-superoxide-anion-generation-go0032928.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032928", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-superoxide-anion-generation-go0032928.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/xanthophyll-metabolic-process-go0016122.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016122", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/xanthophyll-metabolic-process-go0016122.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/aba4-like-pf14108.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14108", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/aba4-like-pf14108.yaml" } ], "pfam_ids": [ "PF14108" ], "protein_name": "Protein ABA DEFICIENT 4, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFSSFISQPLSSSLSVMKRNVSAKRSELCLDSSKIRLDHRWSFIGGSRISVQSNSYTVVHKKFSGVRASWLTTTQIASSVFAVGTTAVLPFYTLMVVAPKAEITKKCMESSVPYIILGVLYVYLLYISWTPETLKYMFSSKYMLPELSGIAKMFSSEMTLASAWIHLLVVDLFAARQVYNDGLENQIETRHSVSLCLLFCPVGIVSHFVTKAIINNQYK", "sequence_length": 220, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a2c6a5353af4435f0f1b755010b68f5220463ac1beb3b9336505e018f4bc66d6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LFP9.json", "taxon_id": "3702", "uniprot_accession": "Q8LFP9", "uniprot_release": "2026_03" } ], "pfam_id": "PF14108", "short_name": "ABA4-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14110", "short_name": "DUF4282", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14111", "short_name": "DUF4283", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14112", "short_name": "DUF4284", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14113", "short_name": "Tae4", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14114", "short_name": "DUF4286", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14117", "short_name": "DUF4287", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14119", "short_name": "DUF4288", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14121", "short_name": "Porin_10", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14123", "short_name": "DUF4290", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14124", "short_name": "DUF4291", "status": "NO_SIBLING_CANDIDATE", 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"ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/caad-pf14159.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14159", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/caad-pf14159.yaml" } ], "pfam_ids": [ "PF14159" ], "protein_name": "Protein CURVATURE THYLAKOID 1B, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPIQSHTRAAKATAYCRKIVRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS", "sequence_length": 174, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d121575dff82ed1629e725515d2c17d474f7133bedb9cf0d9e6a539a98404fc1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LCA1.json", "taxon_id": "3702", "uniprot_accession": "Q8LCA1", "uniprot_release": 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"data/traits/sequence/family/pfam/duf4309-pf14172.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4309-pf14172.yaml" } ], "pfam_ids": [ "PF14172" ], "protein_name": "Uncharacterized protein YjgB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKTMSAITAAAAVTSCFTGFGAASFSAPAKAAAQTNTLSENTNQSAAELVKNLYNTAYKGEMPQQAQGLTINKSTKGDVHAAFGEPERPVGGDNRFDLYHWNMGQPGYGFSYHKDMTISEIRYFGTGVERQLNLGGVTPEVLQKQLGPVNRVLTVPFTDEIDYVYDTGRYELHFVIGTDQTADHVNLKAK", "sequence_length": 191, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2f7136f51b4e45322717265acef9d2a6a7fb6eb047a3a26a983bc30c35e9ed8f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34960.json", "taxon_id": "224308", "uniprot_accession": "O34960", "uniprot_release": "2026_03" } ], 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"MTAPILVRIKRNKNDIVQNCDVYIGRQCNMGGWNLPDSKWKNPFTIKQYGSAEIVCEKYFKYIVSSDLFHDIPELKSKTIGCWCDFPVNKIITGFYCHGCVLIQLYKLIEKYDFDTHKIQSILKKAFCCD", "sequence_length": 130, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b4344147a1109c8e805b9f4e0bc9513586314f8172ef34e119ff352ae59f6245", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UNW9.json", "taxon_id": "212035", "uniprot_accession": "Q5UNW9", "uniprot_release": "2026_03" } ], "pfam_id": "PF14216", "short_name": "DUF4326", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14217", "short_name": "DUF4327", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14219", "short_name": "DUF4328", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4329-pf14220.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14220", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4329-pf14220.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P16917", "section": 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"MSGKPAARQGDMTQYGGSIVQGSAGVRIGAPTGVACSVCPGGVTSGHPVNPLLGAKVLPGETDIALPGPLPFILSRTYSSYRTKTPAPVGSLGPGWKMPADIRLQLRDNTLILSDNGGRSLYFEHLFPGEDGYSRSESLWLVRGGVAKLDEGHRLAALWQALPEELRLSPHRYLATNSPQGPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGRTQTFHREAAGEFSGEITGVTDGAWRHFRLVLTTQAQRAEEARQQAISGGTEPSAFPDTLPGYTEYGRDNGIRLSAVWLTHDPEYPENLPAAPLVRYGWTPRGELAVVYDRSGKQVRSFTYDDKYRGRMVAHRHTGRPEIRYRYDSDGRVTEQLNPAGLSYTYQYEKDRITITDSLDRREVLHTQGEAGLKRVVKKEHADGSVTQSQFDAVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASAFYYNHHNQLTSATGPDGLELRREYDELGRLIQETAPDGDITRYRYDNPHSDLPCATEDATGSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQMTAVHREEGLSQYRAYDSRGQLIAVKDTQGHETRYEYNIAGDLTAVIAPDGSRNGTQYDAWGKAVRTTQGGLTRSMEYDAAGRVIRLTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGKLIRSEDEGLVTHWHYDEADRLTHRTVKGETAERWQYDERGWLTDISHISEGHRVAVHYRYDEKGRLTGERQTVHHPQTEALLWQHETRHAYNAQGLANRCIPDSLPAVEWLTYGSGYLAGMKLGDTPLVEYTRDRLHRETLRSFGRYELTTAYTPAGQLQSQHLNSLLSDRDYTWNDNGELIRISSPRQTRSYSYSTTGRLTGVHTTAANLDIRIPYATDPAGNRLPDPELHPDSTLSMWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYEEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRSRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADALQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALISTEGATAWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNLYGYQLNPISDIDPLGLSMWEDAKSGACTNGLCGTLSAMIGPDKFDSIDSTAYDALNKINSQSICEDKEFAGLICKDNSGRYFSTAPNRGERKGSYPFNSPCPNGTEKVSAYHTHGADSHGEYWDEIFSGKDEKIVKSKDNNIKSFYLGTPSGNFKAIDNHGKEITNRKGLPNVCRVHGNM", "sequence_length": 1411, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "99b7b01b9660a699a7f6601ac6f19d18032feea3fe68044b0904bee186ac0260", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P16917.json", "taxon_id": "83333", "uniprot_accession": "P16917", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4329-pf14220.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14220", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4329-pf14220.yaml" } ], "pfam_ids": [ "PF03527", "PF05593", "PF14220", "PF20148", "PF25023" ], "protein_name": "Protein RhsD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGKPAARQGDMTQYGGPIVQGSAGVRIGAPTGVACSVCPGGMTSGNPVNPLLGAKVLPGETDLALPGPLPFILSRTYSSYRTKTPAPVGVFGPGWKAPSDIRLQLRDDGLILNDNGGRSIHFEPLLPGEAVYSRSESMWLVRGGKAAQPDGHTLARLWGALPPDIRLSPHLYLATNSAQGPWWILGWSERVPGAEDVLPAPLPPYRVLTGMADRFGRTLTYRREAAGDLAGEITGVTDGAGREFRLVLTTQAQRAEEARTSSLSSSDSSRPLSASAFPDTLPGTEYGPDRGIRLSAVWLMHDPAYPESLPAAPLVRYTYTEAGELLAVYDRSNTQVRAFTYDAQHPGRMVAHRYAGRPEMRYRYDDTGRVVEQLNPAGLSYRYLYEQDRITVTDSLNRREVLHTEGGAGLKRVVKKELADGSVTRSGYDAAGRLTAQTDAAGRRTEYGLNVVSGDITDITTPDGRETKFYYNDGNQLTAVVSPDGLESRREYDEPGRLVSETSRSGETVRYRYDDAHSELPATTTDATGSTRQMTWSRYGQLLAFTDCSGYQTRYEYDRFGQMTAVHREEGISLYRRYDNRGRLTSVKDAQGRETRYEYNAAGDLTAVITPDGNRSETQYDAWGKAVSTTQGGLTRSMEYDAAGRVISLTNENGSHSVFSYDALDRLVQQGGFDGRTQRYHYDLTGKLTQSEDEGLVILWYYDESDRITHRTVNGEPAEQWQYDGHGWLTDISHLSEGHRVAVHYGYDDKGRLTGECQTVENPETGELLWQHETKHAYNEQGLANRVTPDSLPPVEWLTYGSGYLAGMKLGGTPLVEYTRDRLHRETVRSFGSMAGSNAAYELTSTYTPAGQLQSQHLNSLVYDRDYGWSDNGDLVRISGPRQTREYGYSATGRLESVRTLAPDLDIRIPYATDPAGNRLPDPELHPDSTLTVWPDNRIAEDAHYVYRHDEYGRLTEKTDRIPAGVIRTDDERTHHYHYDSQHRLVFYTRIQHGEPLVESRYLYDPLGRRMAKRVWRRERDLTGWMSLSRKPEVTWYGWDGDRLTTVQTDTTRIQTVYEPGSFTPLIRVETENGEREKAQRRSLAETLQQEGSENGHGVVFPAELVRLLDRLEEEIRADRVSSESRAWLAQCGLTVEQLARQVEPEYTPARKAHLYHCDHRGLPLALISEDGNTAWSAEYDEWGNQLNEENPHHVYQPYRLPGQQHDEESGLYYNRHRYYDPLQGRYITQDPMGLKGGWNLYQYPLNPLQQIDPMGLLQTWDDARSGACTGGVCGVLSRIIGPSKFDSTADAALDALKETQNRSLCNDMEYSGIVCKDTNGKYFASKAETDNLRKESYPLKRKCPTGTDRVAAYHTHGADSHGDYVDEFFSSSDKNLVRSKDNNLEAFYLATPDGRFEALNNKGEYIFIRNSVPGLSSVCIPYHD", "sequence_length": 1426, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f92b5e3b443db0369ad47eec4988d71a4b89c83de82b8ba6e9f06f2893735059", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P16919.json", "taxon_id": "83333", "uniprot_accession": "P16919", "uniprot_release": "2026_03" } ], "pfam_id": "PF14220", "short_name": "DUF4329", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14221", "short_name": "DUF4330", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14224", "short_name": "DUF4331", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4332-pf14229.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4332-pf14229.yaml" } ], "pfam_ids": [ "PF00152", "PF01336", "PF14229" ], "protein_name": "Lysine--tRNA ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLLELSEQEIIRRNSMEQLRQMGIEPYPAAEYVTNAFSKEIKETFKDDAEPRPVSIAGRIMSRRIMGKASFMELQDSEGRIQVYISRDDICPDENKDTYNVVFKKLLDIGDFVGIKGFVFRTQMGEISVHAQELTVLSKSLRPLPVVKYKDGVAYDGFNDPELRYRQRYVDLVVNEGVKDIFMKRAAIIKTMRTALDEAGYTEVETPILQSIAGGASARPFITHHNSLDIDLYLRIATELYLKRLIVGGFEGVYEIGKNFRNEGMDRTHNPEFTCMELYVQYKDYNWMMSFTEKLLERICIAVNGTSESTIDGKTISFKAPFRRLPILEAIKEKTGYDLEGKTEDEIRAICKELKMEIDDTMGKGKLIDEIFGEFCEGTFIQPTFIIDYPVEMSPLTKMHRSKPGLTERFELMVNGKELANAYSELNDPIDQEERFKEQLRLSEKGDDEAMFIDQDFLRALQFGMPPTSGIGIGIDRLVMLMTGQTTIQEVLLFPQMRPEKTVKKDNADKYVALGISEEWVPALQKAGYLTVEMLKNANANKLRQELCELNKKYKLELQNPTVQEIEAWIANVGE", "sequence_length": 576, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95e4701ee40656428ada2ad44abb5a7911596605105af30881f9418ac285c1e9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6L8C6.json", "taxon_id": "435591", "uniprot_accession": "A6L8C6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4332-pf14229.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4332-pf14229.yaml" } ], "pfam_ids": [ "PF00152", "PF01336", "PF14229" ], "protein_name": "Lysine--tRNA ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNILELSEQEIIRRNSLNELRAMGIEPYPAAEYVTNAFSTDIKAEFKDDETPRQVSVAGRMMSRRIMGKASFIELQDSKGRIQVYITRDDICPGEDKEMYNTVFKRLLDLGDFIGIEGFVFRTQMGEISIHAQKLTVLAKSIKPLPIVKYKDGVTYDSFEDPELRYRQRYVDLAVNEGVKDIFIKRSKVYSSMREYFNSKGYMEVETPILQAIAGGAAARPFMTHHNALDIPLYMRIASELYLKRLIVGGFEGVYEIGKNFRNEGMDRTHNPEFTCMEIYVAYKDYNWMMEFTEKMIEKICLDVNGTTEVKVGDNIINFKAPYKRVTMLGAIKEHTGYDLTGMNEEQIREVCKKLNMEIDDTMGKGKLIDEIFGEFCEGTYIQPTFITDYPIEMSPLTKKHRDNPELTERFELMVNGKELCNAYSELNDPIDQLERFEDQMKLSEKGDDEAMIIDKDFVRALEYGMPPTSGMGIGMDRLTMLMTGQSTIQEVLFFPQMRPEKVVPKDSASKFMELGIAEEWVPVIQKAGYNQVADMKEVNPQKFHQDICGINKKYKLELTNPSVNDVAEWIQKIK", "sequence_length": 575, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "75677b7b7bdd5456faddcde89d119e78100bf4d62b7dee87edf7264a2455aa0f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5L9E5.json", "taxon_id": "272559", "uniprot_accession": "Q5L9E5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4332-pf14229.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4332-pf14229.yaml" } ], "pfam_ids": [ "PF00152", "PF01336", "PF14229" ], "protein_name": "Lysine--tRNA ligase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNILELSEQEIIRRNSLNELRAMGIDPYPAAEYVTNAFSTDIKAEFKDEDEPRQVSVAGRIMSRRVMGKASFIELQDSKGRIQVYITRDDICPGEDKELYNSVFKRLLDLGDFVGIEGFVFRTQMGEISIHAKKLTVLAKSIKPLPIVKYKDGVAYDSFEDPELRYRQRYVDLVVNEGIKETFEKRATVVRTLRNALDEAGYTEVETPILQSIAGGASARPFITHHNSLDIDLYLRIATELYLKRLIVGGFEGVYEIGKNFRNEGMDRTHNPEFTCMELYVQYKDYNWMMSFTEKLLERICIAVNGSTETVVDGKTISFKAPYRRLPILDAIKEKTGYDLNGKSEEEIRQICKELKMEEIDDTMGKGKLIDEIFGEFCEGSYIQPTFITDYPVEMSPLTKMHRSKPGLTERFELMVNGKELANAYSELNDPLDQEERFKEQMRLADKGDDEAMIIDQDFLRALQYGMPPTSGIGIGIDRLVMLMTGQTTIQEVLFFPQMRPEKVIKKDPAAKYMELGIAEDWVPVIQKAGYNTVADMQDVNPQKLHQDICGINKKYKLELTNPSVNDVTEWINKLK", "sequence_length": 576, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "26cc765e13bb37fee8adf7c9a30de09fd19603b20974bd67be4c120552e3b8d8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8A5W4.json", "taxon_id": "226186", "uniprot_accession": "Q8A5W4", "uniprot_release": "2026_03" } ], "pfam_id": "PF14229", "short_name": "DUF4332", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4333-pf14230.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14230", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4333-pf14230.yaml" } ], "pfam_ids": [ "PF14230" ], "protein_name": "Uncharacterized protein Mb2118c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGPQGSDPRQPWQPPGQGADHSSDPTVAAGYPWQQQPTQEATWQAPAYTPQYQQPADPAYPQQYPQPTPGYAQPEQFGAQPTQLGVPGQYGQYQQPGQYGQPGQYGQPGQYAPPGQYPGQYGPYGQSGQGSKRSVAVIGGVIAVMAVLFIGAVLILGFWAPGFFVTTKLDVIKAQAGVQQVLTDETTGYGAKNVKDVKCNNGSDPTVKKGATFECTVSIDGTSKRVTVTFQDNKGTYEVGRPQ", "sequence_length": 244, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c27eea62cbb8496f7284a63c7ab03fbc40593e8a2278859c8e03e3b8e7399e4c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64940.json", "taxon_id": "233413", "uniprot_accession": "P64940", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4333-pf14230.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14230", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4333-pf14230.yaml" } ], "pfam_ids": [ "PF14230" ], "protein_name": "Uncharacterized protein MT2152", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGPQGSDPRQPWQPPGQGADHSSDPTVAAGYPWQQQPTQEATWQAPAYTPQYQQPADPAYPQQYPQPTPGYAQPEQFGAQPTQLGVPGQYGQYQQPGQYGQPGQYGQPGQYAPPGQYPGQYGPYGQSGQGSKRSVAVIGGVIAVMAVLFIGAVLILGFWAPGFFVTTKLDVIKAQAGVQQVLTDETTGYGAKNVKDVKCNNGSDPTVKKGATFECTVSIDGTSKRVTVTFQDNKGTYEVGRPQ", "sequence_length": 244, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c27eea62cbb8496f7284a63c7ab03fbc40593e8a2278859c8e03e3b8e7399e4c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLJ4.json", "taxon_id": "83331", "uniprot_accession": "P9WLJ4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4333-pf14230.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14230", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4333-pf14230.yaml" } ], "pfam_ids": [ "PF14230" ], "protein_name": "Uncharacterized protein Rv2091c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGPQGSDPRQPWQPPGQGADHSSDPTVAAGYPWQQQPTQEATWQAPAYTPQYQQPADPAYPQQYPQPTPGYAQPEQFGAQPTQLGVPGQYGQYQQPGQYGQPGQYGQPGQYAPPGQYPGQYGPYGQSGQGSKRSVAVIGGVIAVMAVLFIGAVLILGFWAPGFFVTTKLDVIKAQAGVQQVLTDETTGYGAKNVKDVKCNNGSDPTVKKGATFECTVSIDGTSKRVTVTFQDNKGTYEVGRPQ", "sequence_length": 244, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c27eea62cbb8496f7284a63c7ab03fbc40593e8a2278859c8e03e3b8e7399e4c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLJ5.json", "taxon_id": "83332", "uniprot_accession": "P9WLJ5", "uniprot_release": "2026_03" } ], "pfam_id": "PF14230", "short_name": "DUF4333", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14232", "short_name": "DUF4334", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14233", "short_name": "DUF4335", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14234", "short_name": "DUF4336", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14235", "short_name": "DUF4337", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain UMEA 4076-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/drua-pf14236.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14236", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/drua-pf14236.yaml" } ], "pfam_ids": [ "PF14236" ], "protein_name": "Druantia protein DruA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHKDPSIIVNINLREAKLKKKVREHLQSLGFTRSDSGALQAPGNTKDVIRALHSSQRAERIFANQKFITLRAAKLIKFFASGNEVIPDKISPVLERVKSGTWQGDLFRLAALTWSVPVSSGFGRRLRYLVWDESNGKLIGLIAIGDPVFNLAVRDNLIGWDTHARSSRLVNLMDAYVLGALPPYNALLGGKLIACLLRSRDLYDDFAKVYGDTVGVISQKKKQARLLAITTTSSMGRSSVYNRLKLDGIQYLKSIGYTGGWGHFHIPDSLFIELRDYLRDMDHAYADHYMFGNGPNWRLRTTKAALNVLGFRDNLMKHGIQREVFISQLAENATSILQTGKGEPDLTSLLSAKEIAECAMARWMVPRSIRNPEYRLWKARDLFDFISNDSLKFPPSDEIAKTVV", "sequence_length": 404, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "25e5f2c0306df4b2b733111fbd25be403255193eb8f701d3123439f28b68d148", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DW34.json", "taxon_id": "1281278", "uniprot_accession": "P0DW34", "uniprot_release": "2026_03" } ], "pfam_id": "PF14236", "short_name": "DruA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/amyloplast-organization-go0009660.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009660", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/amyloplast-organization-go0009660.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"data/traits/sequence/domain/pfam/sdg2-c-pf19633.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19633", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sdg2-c-pf19633.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O23372", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00856", "PF14237", "PF19633", "PF25531" ], "protein_name": "Histone-lysine N-methyltransferase ATXR3", "registry_source": { "commit": 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"PF19432", "PF29707", "PF29708" ], "protein_name": "DnaJ homolog subfamily C member 13", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIIRENKDLACFYTTKHSWRGKYKRVFSVGTHAITTYNPNTLEVTNQWPYGDICSISPVGKGQGTEFNLTFRKGSGKKSETLKFSTEHRTELLTEALRFRTDFSEGKITGRRYNCYKHHWSDSRKPVILEVTPGGFDQINPATNRVLCSYDYRNIEGFVDLSDYQGGFCILYGGFSRLHLFASEQREEIIKSAIDHAGNYIGISLRIRKEPLEFEQYLNLRFGKYSTDESITSLAEFVVQKISPRHSEPVKRVLALTETCLVERDPATYNIATLKPLGEVFALVCDSENPQLFTIEFIKGQVRKYSSTERDSLLASLLDGVRASGNRDVCVKMTPTHKGQRWGLLSMPVDEEVESLHLRFLATPPNGNFADAVFRFNANISYSGVLHAVTQDGLFSENKEKLINNAITALLSQEGDVVASNAELESQFQAVRRLVASKAGFLAFTQLPKFRERLGVKVVKALKRSNNGIIHAAVDMLCALMCPMHDDYDLRQEQLNKASLLSSKKFLENLLEKFNSHVDHGTGALVISSLLDFLTFALCAPYSETTEGQQFDMLLEMVASNGRTLFKLFQHPSMAIIKGAGLVMKAIIEEGDKEIATKMQELALSEGALPRHLHTAMFTISSDQRMLTNRQLSRHLVGLWTADNATATNLLKRILPPGLLAYLESSDLVPEKDADRMHVRDNVKIAMDQYGKFNKVPEWQRLAGKAAKEVEKFAKEKVDLVLMHWRDRMGIAQKENINQKPVVLRKRRQRIKIEANWDLFYYRFGQDHARSNLIWNFKTREELKDTLESEMRAFNIDRELGSANVISWNHHEFEVKYECLAEEIKIGDYYLRLLLEEDENEESGSIKRSYEFFNELYHRFLLTPKVNMKCLCLQALAIVYGRCHEEIGPFTDTRYIIGMLERCTDKLERDRLILFLNKLILNKKNVKDLMDSNGIRILVDLLTLAHLHVSRATVPLQSNVIEAAPDMKRESEKEWYFGNADKERSGPYGFHEMQELWTKGMLNAKTRCWAQGMDGWRPLQSIPQLKWCLLASGQAVLNETDLATLILNMLITMCGYFPSRDQDNAIIRPLPKVKRLLSDSTCLPHIIQLLLTFDPILVEKVAILLYHIMQDNPQLPRLYLSGVFFFIMMYTGSNVLPVARFLKYTHTKQAFKSEETKGQDIFQRSILGHILPEAMVCYLENYEPEKFSEIFLGEFDTPEAIWSSEMRRLMIEKIAAHLADFTPRLQSNTRALYQYCPIPIINYPQLENELFCNIYYLKQLCDTLRFPDWPIKDPVKLLKDTLDAWKKEVEKKPPMMSIDDAYEVLNLPQGQGPHDESKIRKAYFRLAQKYHPDKNPEGRDMFEKVNKAYEFLCTKSAKIVDGPDPENIILILKTQSILFNRHKEDLQPYKYAGYPMLIRTITMETSDDLLFSKESPLLPAATELAFHTVNCSALNAEELRRENGLEVLQEAFSRCVAVLTRASKPSDMSVQVCGYISKCYSVAAQFEECREKITEMPSIIKDLCRVLYFGKSIPRVAALGVECVSSFAVDFWLQTHLFQAGILWYLLGFLFNYDYTLEESGIQKSEETNQQEVANSLAKLSVHALSRLGGYLAEEQATPENPTIRKSLAGMLTPYVARKLAVASVTEILKMLNSNTESPYLIWNNSTRAELLEFLESQQENMIKKGDCDKTYGSEFVYSDHAKELIVGEIFVRVYNEVPTFQLEVPKAFAASLLDYIGSQAQYLHTFMAITHAAKVESEQHGDRLPRVEMALEALRNVIKYNPGSESECIGHFKLIFSLLRVHGAGQVQQLALEVVNIVTSNQDCVNNIAESMVLSSLLALLHSLPSSRQLVLETLYALTSSTKIIKEAMAKGALIYLLDMFCNSTHPQVRAQTAELFAKMTADKLIGPKVRITLMKFLPSVFMDAMRDNPEAAVHIFEGTHENPELIWNDNSRDKVSTTVREMMLEHFKNQQDNPEANWKLPEDFAVVFGEAEGELAVGGVFLRIFIAQPAWVLRKPREFLIALLEKLTELLEKNNPHGETLETLTMATVCLFSAQPQLADQVPPLGHLPKVIQAMNHRNNAIPKSAIRVIHALSENELCVRAMASLETIGPLMNGMKKRADTVGLACEAINRMFQKEQSELVAQALKADLVPYLLKLLEGIGLENLDSPAATKAQIVKALKAMTRSLQYGEQVNEILCRSSVWSAFKDQKHDLFISESQTAGYLTGPGVAGYLTAGTSTSVMSNLPPPVDHEAGDLGYQT", "sequence_length": 2243, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f9823d9f802d30d5479382bb70b7ac3cfe6a8c4007aa072bf689bba1a137d2f1", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/O75165.json", "taxon_id": "9606", "uniprot_accession": "O75165", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/gyf-domain-2-ipr025640.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025640", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gyf-domain-2-ipr025640.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gyf-2-pf14237.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gyf-2-pf14237.yaml" } ], "pfam_ids": [ "PF14237" ], "protein_name": "Protein TIC 56, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSMNFNPFQNWFEKPPNPVPSINFVSLADSFFPKSQSPNFASIGLPKFSKKSPKPETAGTDEPGPYKQIAEQFLWECENIPDYRHTPEVDKLLNEDPVFEKKENPSTEEIEAEQKWWESFRASPVVQFMTRAEEIADDMNKMELEDNDTPYRKEDKDYWRAIPHVPGFDGRPMPRKAIKSKEESDDKFWDFMKQFLFGLWGFRQRPYPPGRPIDVAQAIGYKRLEKRYYDFIMKTGGWWYKDRLGRSRGPCEIITLKTAYGAGIIDRDTFIWGEDMDEWAPIHMVYGLEPAIATWEVRLGAAATAFLHKLQKGIPPWVPLKGREPKTYKQLQKEAIESKKRDMAVLEANGGVWPGVRTPSHALFLWASGSELTTVLESDHMPNKFIPKQLRLELAKVIPGLRPWEVISIEQAMDQISYGGEWYREPLGTYTTGPPYIREWNRSVMRLFRIFYNLSVRVGQKLERTVPGFDTIMDKVQKDYDKRIARRMKRREEELREEDLKHYSGRTDEDEEEEEEEDDDSNSKKD", "sequence_length": 527, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dd4ff1314e68ed065d6e0da6e6aa61db5051bd8a1675b24671aa92e8938b3c5b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Y1W1.json", "taxon_id": "3702", "uniprot_accession": "Q7Y1W1", "uniprot_release": "2026_03" } ], "pfam_id": "PF14237", "short_name": "GYF_2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14238", "short_name": "DUF4340", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14242", "short_name": "DUF4342", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14243", "short_name": "R2K_3", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14247", "short_name": "DUF4344", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14248", "short_name": "DUF4345", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/dihydroneopterin-aldolase-activity-go0004150.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0004150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/dihydroneopterin-aldolase-activity-go0004150.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/dihydropteroate-synthase-like-protein-tigr00284.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR00284", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/dihydropteroate-synthase-like-protein-tigr00284.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/pterin-binding-enzymes-this-family-includes-dihydropteroate-synthase-d-cd00423.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd00423", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/pterin-binding-enzymes-this-family-includes-dihydropteroate-synthase-d-cd00423.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf6513-ipr045406.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045406", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf6513-ipr045406.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pterin-binding-domain-ipr000489.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR000489", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pterin-binding-domain-ipr000489.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ycf91-like-ipr025595.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025595", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ycf91-like-ipr025595.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pterin-bind-pf00809.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00809", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pterin-bind-pf00809.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pterinbd-duf4346-pf14251.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pterinbd-duf4346-pf14251.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf6513-pf20123.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20123", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf6513-pf20123.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/pterin-binding.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50972", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/pterin-binding.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q57571", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00809", "PF14251", "PF20123" ], "protein_name": "Uncharacterized protein MJ0107", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "04a647a93af202919e856b95ffd85aa8cc28f2df4ea181eec7111655cffc6d00", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MREIMKILIITGKLAERKVKDAVKKYDFIDVHVANISVAAFLTPNLIIKEIKKLENKLGKKLKDIYDFVLVTGLIRHDLKNVEEETGIKCFKSTREASDIPILIENLDKIKLSTKEYADLQLLEIIRKKCEEEIKKAEEQELGEGDIKIGKLKVGDKFPMRVLGEIVHAPWLKEKELEEKIIYYLESGADMIDLGMVSNENNADKIKDMLKIARDLTDNPISVDTLNTKELIEAINLGADMILSVDAGNLDELIPYLKDSETAVVVLPTNYKTNYVPETIEGKIKSLEENIKKLIDAGIEKIVADPILEPINNAGCSFIESVIACREFKKRNKLPLFFGVGNVTELFDADSNGVNALLAAIGAEIGANILFTPEASAKCKFSIKELKIASKMMFLAKKRNSLPKDIGYNLINYKDKRFEEEITFNSYNIPIIKAEEDERQILDEGSFKIEIDRKNKEIVAIYFNKRREPVLIIRGKKPKEIYETAIRLNLIKKLDHASYFGRELAKAEIALRIGKKYNQDFDLFL", "sequence_length": 525, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "04a647a93af202919e856b95ffd85aa8cc28f2df4ea181eec7111655cffc6d00", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57571.json", "taxon_id": "243232", "uniprot_accession": "Q57571", "uniprot_release": "2026_03" } ], "pfam_id": "PF14251", "short_name": "PterinBD-DUF4346", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4347-pf14252.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4347-pf14252.yaml" } ], "pfam_ids": [ "PF00621", "PF12937", "PF14252" ], "protein_name": "Epithelial cell-transforming sequence 2 oncogene-like", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESFHTRFSAWTPFSNKSLNRQLFQERVALISHWFDLWTNKQRQEFLFAIFLRCTKSQLRFVQDWFSERMQVAKVDFSTVLPRFISLYIFSFLSPKDLCAAAQVSWPWKFLTEQDCLWMPKCVKFGWFLPYTPTDNEYGAWKRHYIACVSHLDWLTPREAAATYGTLNEPKTEDEELLERQREKCLRKRIWEKIALRKKELFKVRPPWVSGTCCSSVLKPRCQPRLSQTVRERVGLHEALEKQLVLTSLETLPKRSNISGSHSYPLLSKKNWHGVHKNDDRSSYALRPHFMLISSRIPAYEMVMESVKAGVVSVVYEHSVTLESLLYLIEKALDGQKAQSIGIFSDGDSREINLLQGYKIGVKNLLRPEVRDFWEKLGSYVATEEEGGHVDFFVPLGASEAGIEVLSQLSQLTGTFFTAPTGIATGSYQHILSDWLGSQWGKAPSSIYFCESKLQTWSSFTDFLEETLKTVRKQLYPFFKELQKSISGRMIGQFMFDTMGMTNILNNQDTAQALADGLMELSKEDSERNVVEDNSWDTKSRLSKNDLNFEALINLERILQKDSAEKRARVVRELLQSERKYVQILEIVRDVYVAPLKAALSSNRAILSAANIQIIFCDILQILSLNRQFLDNLRDRLQEWGPAHCVGEIVTKFGSQLNTYTNFFNNYPVILKTIEKCREMIPAFRTFLKRHDKTIVTKMLSLPELLLYPSRRFEEYLNLLYAVRLHTPAEHVDRGDLTTAIDQIKKYKGYIDQMKQNITMKDHLSDIQRIIWGCPTLSEVNRYLIRVQDVAQLHCCDEEISFSLRLYEHIHDLSLFLFNDALLVSSRGTSHTPFERTSKTTYQFIASVALHRLLIENIPDSKYVKNAFILQGPKYKWICATEIEDDKFLWLSVLRNAIKSSMEK", "sequence_length": 904, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f6da02d2f159f9daa45b4d467e65cb349411d4c06d45962d9731633e3c07c350", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q008S8.json", "taxon_id": "9606", "uniprot_accession": "Q008S8", "uniprot_release": "2026_03" } ], "pfam_id": "PF14252", "short_name": "DUF4347", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14254", "short_name": "DUF4348", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14257", "short_name": "DUF4349", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4350-pf14258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4350-pf14258.yaml" } ], "pfam_ids": [ "PF14258" ], "protein_name": "Uncharacterized membrane protein Rv3691", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGAGPVIPTRLATVRRRRPWRGVLLTLAAVAVVASIGTYLTAPRPGGAMAPASTSSTGGHALATLLGNHGVEVVVADSIADVEAAARPDSLLLVAQTQYLVDNALLDRLAKAPGDLLLVAPTSRTRTALTPQLRIAAASPFNSQPNCTLREANRAGSVQWGPSDTYQATGDLVLTSCYGGALVRFRAEGRTITVVGSSNFMTNGGLLPAGNAALAMNLAGNRPRLVWYAPDHIEGEMSSPSSLSDLIPENVHWTIWQLWLVVLLVALWKGRRIGPLVAEELPVVIRASETVEGRGRLYRSRRARDRAADALRTATLQRLRPRLGVGAGAPAPAVVTTIAQRSKADPPFVAYHLFGPAPATDNDLLQLARALDDIERQVTHS", "sequence_length": 381, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f6676c0cf78c0b411df63ba5212cf081570003035fe80135d4bc5855d22984f", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/O69659.json", "taxon_id": "83332", "uniprot_accession": "O69659", "uniprot_release": "2026_03" } ], "pfam_id": "PF14258", "short_name": "DUF4350", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14261", "short_name": "DUF4351", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/cthe-2159-pf14262.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14262", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/cthe-2159-pf14262.yaml" } ], "pfam_ids": [ "PF14262" ], "protein_name": "Carbohydrate-binding domain-containing protein Cthe_2159", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSIKKLILAASILTTLALTGCGGKGAVQPSGVSTGDVNAKIVFDNDKVNADNVDGLSVSEREVKITKPGMYTFSGTWNDGQILVDIGKEFEAVLVLDGVNITNTKSAPIYIKSAEKVKIELADGKDNVLTDAEFYEFEDPQDNKPNACIYSRDDITIKGNGNLTVNANFNNGIGTSNDLKITGGNITVKAFNNGLKGNDSVTISGGNIDITAEADGIKVENTEEPHKGYVNITGGTIKIRAKDDAIDSVRSVSINNADVKVSVGGKDVKCEGVLNIAEGCLGKLEE", "sequence_length": 286, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4d54c57a954fcc54f7db70d3b5b22404710824b9f7096ce2af68187ce4fdce6a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A3DHD2.json", "taxon_id": "203119", "uniprot_accession": "A3DHD2", "uniprot_release": "2026_03" } ], "pfam_id": "PF14262", "short_name": "Cthe_2159", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14263", "short_name": "DUF4354", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus phage 80alpha", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4355-pf14265.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14265", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4355-pf14265.yaml" } ], "pfam_ids": [ "PF14265" ], "protein_name": "Capsid assembly scaffolding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEENKLKFNLQFFADQSDDPDEPGGDGKKGNPDKKENDEGTEITFTPEQQKKVDEILERRVAHEKKKADEYAKEKAAEAAKEAAKLAKMNKDQKDEYEREQMEKELEQLRSEKQLNEMRSEARKMLSEAEVDSSDEVVNLVVTDTAEQTKSNVEAFSNAVKKAVNEAVKVNARQSPLTGGDSFNHSTKNKPQNLAEIARQKRIIKN", "sequence_length": 206, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "42a0351367b429d795161ade33e387442027c0beb9d062e913d57200cc6d02d7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4ZFB2.json", "taxon_id": "53369", "uniprot_accession": "A4ZFB2", "uniprot_release": "2026_03" } ], "pfam_id": "PF14265", "short_name": "DUF4355", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/putative-component-of-biosynthetic-module-ipr025647.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025647", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/putative-component-of-biosynthetic-module-ipr025647.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/yceg-bac-pf14266.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/yceg-bac-pf14266.yaml" } ], "pfam_ids": [ "PF14266" ], "protein_name": "Uncharacterized protein YceG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRQEELTIHKALPADGDWKSLLFQPLPERDHYETAQGLSFSRLAGQILGTPIDETDYYNELYELSVNDRITILSETLDKTIEPETFQKLQHIHSINQKEKGLSVSRFVAFLDGEKLIAKHSNPLMHRHLRKALMTLLHTFADSHEKGLNHPDFRRVLLDVSKFSLNHLNPWLEKTDIEREMPKVVWYGDATKSQLYFLYYLMLVGCDVLLFHPAGTDQLALVDPKQELGFTEKLPDVSELQPFPKEKPDRKSTVAYRSTKEIEHVLNHEESMLYKPWQFRDHTPVSVTLKTTYDELFLITKERAFIRPNFKADKHSIEIPNVFAKIMGVSKDNKEYWNRLHTLADYQETEMVRSFPFTEEIKSNYQFHYSHALDQEGNIDPDKLMASNVWQYKQLPAGVQTAIAKTISRMCRYPRLKALHQEQVKDVQIYLFKQTTNLPANLLKLIQMFDYAQTVPKLVLYHTEMSGGLTRSDAAALLFLNEIGIDIIIYNPPGHQDIEQFIEEDQYDIHWLDDMVFQQDYKEPSLVKRLFRTITQK", "sequence_length": 537, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ef59b650d91a909872f83f8cd4ec67c2248edbfd6c479922989e23ffe41cd5f3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34809.json", "taxon_id": "224308", "uniprot_accession": "O34809", "uniprot_release": "2026_03" } ], "pfam_id": "PF14266", "short_name": "YceG_bac", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14267", "short_name": "DUF4357", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14270", "short_name": "DUF4358", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14271", "short_name": "DUF4359", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4360-pf14273.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14273", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4360-pf14273.yaml" } ], "pfam_ids": [ "PF14273" ], "protein_name": "Uncharacterized secreted protein ARB_07590", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSAAILALLAQALAVTAQPVEGDRTPGTRTLDLPNFPGGSVPTRGVEKRADLPPDNGGGNAPDPDKVHIVGVTYGGTGCPDGTVSHVLSDDRQIMTLIFDQYVAQIGPGVNTKENRKNCQLNINLRYPGGFQFSVFSADYRGYANLEKGVSGTQKSIYYFSGQTEQTSTSTTWKGPIDKDYILHDEANQTSTVWSPCGANGALNINSQVRLTATDRNARGILTNDSVDTSFKQIVHVRWQQCTN", "sequence_length": 245, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aaa5869812e78d595454f4deed1120c58a9805922d9d8f3b15e5b50b6f7f592f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D4ATM6.json", "taxon_id": "663331", "uniprot_accession": "D4ATM6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4360-pf14273.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14273", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4360-pf14273.yaml" } ], "pfam_ids": [ "PF14273" ], "protein_name": "Uncharacterized secreted protein ARB_00107", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLSLALLGLAASQAVGLAIPDATPETDVPDVLTLTERHHGGSGCPSNTQTVRYNVANDRRSIVIQYENLTARINSKTTPADERTNCQVNLQVAGRNNYQFSVASATYYGSARLDAGVTGRHGSIYYFSGSPDQAFTATGISGPRRGNYRLDDDANKRIWSPCGESYPFNINTDVRMDSDNDNATGEMSREDGADGTVKQVISLDWRRC", "sequence_length": 209, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79bf3a39da3a4d4346bf37348ce218e33fa217b3cefc8a436b7173c99512cd6a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D4AV98.json", "taxon_id": "663331", "uniprot_accession": "D4AV98", "uniprot_release": "2026_03" } ], "pfam_id": "PF14273", "short_name": "DUF4360", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14274", "short_name": "BT_3044-like_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14275", "short_name": "DUF4362", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14276", "short_name": "DUF4363", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14277", "short_name": "DUF4364", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14280", "short_name": "DUF4365", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14283", "short_name": "CD1107-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/proteins-similar-to-periplasmic-molecular-chaperone-lola-the-outer-mem-cd16329.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd16329", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/proteins-similar-to-periplasmic-molecular-chaperone-lola-the-outer-mem-cd16329.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4367-ipr025377.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025377", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4367-ipr025377.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4367-pf14285.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14285", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4367-pf14285.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lola-pf03548.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03548", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lola-pf03548.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/lipoprotein-localisation-lola-lolb-lppx-ipr029046.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029046", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/lipoprotein-localisation-lola-lolb-lppx-ipr029046.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/lipoprotein-localisation-lola-lolb-lppx-2-50-20-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.50.20.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/lipoprotein-localisation-lola-lolb-lppx-2-50-20-10.yaml" } ], "pfam_ids": [ "PF03548", "PF14285" ], "protein_name": "Uncharacterized protein MJ0687", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNYKYLILSLFLIVGVFFAGCTQQMNADEIAKKMQEKYEAMKSMEADVLITTNIMGQTETMQYKYAFEKPNKFYMENDDVLIVCDGKTYYMYDKKKNQYTKMEIKGELNNMFNPDYGKFIKSMLEKFNVSYLGEKTYDGRKCYVLELISKENPEEKMKMYVDEEYWQPLKIEMDGVTIEYKNVKFNVDVPDDRFKFVPPEGAKLMSSGAMTTSKNIDEVQKDVSFKILVPKYTAGLELQNAMATKQNANNEESETVILTYGENGELAIIESKDNKPLTIPENGSNLITLKNGVKALISDSGDVKMLMFEYNGIKVIIAGKLDKNELIKIANSMIE", "sequence_length": 335, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "040a84cb8c0d1cd8965ba969b72c7ac0ef0bcb9fc3a52aa086f2510eadb8978f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q58100.json", "taxon_id": "243232", "uniprot_accession": "Q58100", "uniprot_release": "2026_03" } ], "pfam_id": "PF14285", "short_name": "DUF4367", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14287", "short_name": "DUF4368", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14289", "short_name": "DUF4369", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sdh5-plant-pf14290.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14290", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sdh5-plant-pf14290.yaml" } ], "pfam_ids": [ "PF14290" ], "protein_name": "Succinate dehydrogenase subunit 5, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTLGRAIHTVGNRIRGTAQAQARVGSLLQGSHHIEKHLSRHRTLITVAPNASVIGDVQINKGSFISYASVSRDLQYPRAMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA", "sequence_length": 257, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "443772e196aea574d9b2b212aaefb857cc69ec0772626be6fc70a34324359716", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SX77.json", "taxon_id": "3702", "uniprot_accession": "Q9SX77", "uniprot_release": "2026_03" } ], "pfam_id": "PF14290", "short_name": "SDH5_plant", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hat-c-terminal-dimerisation-domain-ipr008906.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008906", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hat-c-terminal-dimerisation-domain-ipr008906.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zmym1-like-rnase-like-domain-ipr025398.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zmym1-like-rnase-like-domain-ipr025398.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dimer-tnp-hat-pf05699.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05699", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dimer-tnp-hat-pf05699.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4371-pf14291.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14291", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4371-pf14291.yaml" } ], "pfam_ids": [ "PF05485", "PF05699", "PF14291" ], "protein_name": "52 kDa repressor of the inhibitor of the protein kinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPNFCAAPNCTRKSTQSDLAFFRFPRDPARCQKWVENCRRADLEDKTPDQLNKHYRLCAKHFETSMICRTSPYRTVLRDNAIPTIFDLTSHLNNPHSRHRKRIKELSEDEIRTLKQKKIDETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILPLTLEEKENKEYLKSLFEILILMGKQNIPLDGHEADEIPEGLFTPDNFQALLECRINSGEEVLRKRFETTAVNTLFCSKTQQRQMLEICESCIREETLREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDESHNLREEFIGFLPYEADAEILAVKFHTMITEKWGLNMEYCRGQAYIVSSGFSSKMKVVASRLLEKYPQAIYTLCSSCALNMWLAKSVPVMGVSVALGTIEEVCSFFHRSPQLLLELDNVISVLFQNSKERGKELKEICHSQWTGRHDAFEILVELLQALVLCLDGINSDTNIRWNNYIAGRAFVLCSAVSDFDFIVTIVVLKNVLSFTRAFGKNLQGQTSDVFFAAGSLTAVLHSLNEVMENIEVYHEFWFEEATNLATKLDIQMKLPGKFRRAHQGNLESQLTSESYYKETLSVPTVEHIIQELKDIFSEQHLKALKCLSLVPSVMGQLKFNTSEEHHADMYRSDLPNPDTLSAELHCWRIKWKHRGKDIELPSTIYEALHLPDIKFFPNVYALLKVLCILPVMKVENERYENGRKRLKAYLRNTLTDQRSSNLALLNINFDIKHDLDLMVDTYIKLYTSKSELPTDNSETVENT", "sequence_length": 761, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d49ca6e6c0b58df59c7fb1f60d2867f1596231e97a7b2f0a31fa65a5a0965c3b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O43422.json", "taxon_id": "9606", "uniprot_accession": "O43422", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zmym1-like-rnase-like-domain-ipr025398.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zmym1-like-rnase-like-domain-ipr025398.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4371-pf14291.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14291", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4371-pf14291.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trash-zmym4-pf24900.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trash-zmym4-pf24900.yaml" } ], "pfam_ids": [ "PF05699", "PF06467", "PF14291", "PF24900" ], "protein_name": "Zinc finger MYM-type protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKEPLLGGECDKAVASQLGLLDEIKTEPDNAQEYCHRQQSRTQENELKINAVFSESASQLTAGIQLSLASSGVNKMLPSVSTTAIQVSCAGCKKILQKGQTAYQRKGSAQLFCSIPCITEYISSASSPVPSKRTCSNCSKDILNPKDVISVQLEDTTSCKTFCSLSCLSSYEEKRKPFVTICTNSILTKCSMCQKTAIIQYEVKYQNVKHNLCSNACLSKFHSANNFIMNCCENCGTYCYTSSSLSHILQMEGQSHYFNSSKSITAYKQKPAKPLISVPCKPLKPSDEMIETTSDLGKTELFCSINCFSAYSKAKMESSSVSVVSVVHDTSTELLSPKKDTTPVISNIVSLADTDVALPIMNTDVLQDTVSSVTATADVIVDLSKSSPSEPSNAVASSSTEQPSVSPSSSVFSQHAIGSSTEVQKDNMKSMKISDELCHPKCTSKVQKVKGKSRSIKKSCCADFECLENSKKDVAFCYSCQLFCQKYFSCGRESFATHGTSNWKKTLEKFRKHEKSEMHLKSLEFWREYQFCDGAVSDDLSIHSKQIEGNKKYLKLIIENILFLGKQCLPLRGNDQSVSSVNKGNFLELLEMRAKDKGEETFRLMNSQVDFYNSTQIQSDIIEIIKTEMLQDIVNEINDSSAFSIICDETINSAMKEQLSICVRYPQKSSKAILIKERFLGFVDTEEMTGTHLHRTIKTYLQQIGVDMDKIHGQAYDSTTNLKIKFNKIAAEFKKEEPRALYIHCYAHFLDLSIIRFCKEVKELRSALKTLSSLFNTICMSGEMLANFRNIYRLSQNKTCKKHISQSCWTVHDRTLLSVIDSLPEIIETLEVIASHSSNTSFADELSHLLTLVSKFEFVFCLKFLYRVLSVTGILSKELQNKTIDIFSLSSKIEAILECLSSERNDVYFKTIWDGTEEICQKITCKGFKVEKPSLQKRRKIQKSVDLGNSDNMFFPTSTEEQYKINIYYQGLDTILQNLKLCFSEFDYCKIKQISELLFKWNEPLNETTAKHVQEFYKLDEDIIPELRFYRHYAKLNFVIDDSCINFVSLGCLFIQHGLHSNIPCLSKLLYIALSWPITSASTENSFSTLPRLKTYLCNTMGQEKLTGPALMAVEQELVNKLMEPERLNEIVEKFISQMKEI", "sequence_length": 1142, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e822cfaf1f69871017137626f47bbdab9c15ff2c2f6b1b0c10ccb087400decb1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5SVZ6.json", "taxon_id": "9606", "uniprot_accession": "Q5SVZ6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zmym1-like-rnase-like-domain-ipr025398.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zmym1-like-rnase-like-domain-ipr025398.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4371-pf14291.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14291", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4371-pf14291.yaml" } ], "pfam_ids": [ "PF05485", "PF05699", "PF14291" ], "protein_name": "52 kDa repressor of the inhibitor of the protein kinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPNFCAAPNCTRKSTQSDLAFFRFPRDPARCQKWVENCRRADLEDKTPDQLNKHYRLCAKHFETSMICRTSPYRTVLRDNAIPTIFDLTSHLNNPHSRHRKRIKELSEDEIRTLKQKKIEETSEQEQETNTNAQNPSAEAVNQQDANVLPLTLEEKENKEYLKSLFEILVLMGKQNIPLDGHEADEVPEGLFAPDNFQALLECRINSGEEVLRKRFEATAVNTLFCSKTQQRHMLEICESCIREETLREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDDAHNLREEFVGFLPYEADAEILAVKFHTTITEKWGLNMEYCRGQAYIVSSGFSSKMKVVASRLLEKYPQAVYTLCSSCALNAWLAKSVPVIGVSVALGTIEEVCSFFHRSPQLLLELDSVISVLFQNSEERAKELKEICHSQWTGRHDAFEILVDLLQALVLCLDGIINSDTNVRWNNYIAGRAFVLCSAVTDFDFIVTIVVLKNVLSFTRAFGKNLQGQTSDVFFAASSLTAVLHSLNEVMENIEVYHEFWFEEATNLATKLDIQMKLPGKFRRAQQGNLESQLTSESYYKDTLSVPTVEHIIQELKDIFSEQHLKALKCLSLVPSVMGQLKFNTSEEHHADMYRSDLPNPDTLSAELHCWRIKWKHRGKDIELPSTIYEALHLPDIKFFPNVYALLKVLCILPVMKVENERYENGRKRLKAYLRNTLTDQRSSNLALLNINFDIKHDLDLMVDTYIKLYTNKSELPTINSETIENT", "sequence_length": 758, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e76e43fb6ad5c1f76a7357691826157825b945608a8e818e9aff29392dcb582c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CUX1.json", "taxon_id": "10090", "uniprot_accession": "Q9CUX1", "uniprot_release": "2026_03" } ], "pfam_id": "PF14291", "short_name": "DUF4371", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14294", "short_name": "DUF4372", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lin1244-n-pf14297.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lin1244-n-pf14297.yaml" } ], "pfam_ids": [ "PF07261", "PF14297" ], "protein_name": "Uncharacterized phage-related protein Lin1244/Lin1753", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARPLKEGLDYFPLDVDADYDDKFQLIETLHGPTGFAIMIKLFMKIYSQNFYYKWTETEQILFAKRVNVDINTLKTVVNDCIKYDLFDNNLFSEFQILTSLGVQERYFTAIGRRKKQIVVLEYLLLDRPEVINLCPKIVFANINVVNDDINAEQEELMPALSAQTKGKESKVNESKAVVSEQEKLPEKIVKEKPTTTAYKFWEENVAITGLSEFDRELLKKLISLGGNELTVHAMKKAIELNRRRMKTVDTVLRGWLDNGVKTTAEADEQEKNWNGGAKKNARAEPAKQEIKISDQYNFGATRTD", "sequence_length": 305, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b3b38df10aecb26db864d6885ba222e3e3b62438405de78c50433034c2774d31", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q925X2.json", "taxon_id": "272626", "uniprot_accession": "Q925X2", "uniprot_release": "2026_03" } ], "pfam_id": "PF14297", "short_name": "Lin1244_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14298", "short_name": "XusB", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dmp19-pf14300.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dmp19-pf14300.yaml" } ], "pfam_ids": [ "PF14300" ], "protein_name": "DNA mimic protein DMP19", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTALTLPEDIRQQEPSALLYTLVSAYLEHTAQTGDESLSCLSDDQHTLTAFCYLDSQVEEGGFVQLIASGYGEYIFRNPLADSLRRWKIKAVPKVLDKAKALYEQHGKTIETLADGGADIPSLRKQFPEFEEWDGAYYEAAEQDLPLLAEHIQSNWETFAHIGQA", "sequence_length": 165, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c26ce4dbb43a0b9e1c9f973f1b27f93dbb0edc09eb179dc3f2b1a1c73ad2ceb1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9K0P4.json", "taxon_id": "122586", "uniprot_accession": "Q9K0P4", "uniprot_release": "2026_03" } ], "pfam_id": "PF14300", "short_name": "DMP19", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14301", "short_name": "DUF4376", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14302", "short_name": "DUF4377", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/longifolia-1-2-like-c-terminal-domain-ipr025486.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/longifolia-1-2-like-c-terminal-domain-ipr025486.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4378-pf14309.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14309", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4378-pf14309.yaml" } ], "pfam_ids": [ "PF01302", "PF14309" ], "protein_name": "Centrosome-associated protein 350", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSSKSKEVPLPNPRNSQSKETIQDVTTSWDALSQTKAALRHIENKLEVTPTSTAVIDSVMDTKKSASATRKISRKDGRCLDDSWASAPTSKFSKPRKEKSRSPLRATTLESNVKKNNRVEFREPLVSYRETHGTPFSLSPSHLESKHVYCIHEEKPESGKQMVVSREDRNIQCCDFESAQPSVISDTVVRFLNDGPAIDALHSSECLMKMGVHVRTEDEMPNRTKGSENNSKPSLNNMEHDVDPKVMLLSDSSPSSSACNSQRSDISKRQQHDIKLEKLKERIRKQWEHSEEINGQAQTLGHIDHPVMVVNVDNSVTTKVRKVATAPPAPAYKGFNPSETKIRTPDGKVWQEAEFQSMSRELYRDLALQFTDDTSVKEKPVEKSKEKKVVKPVRKIQKVTQLSNPECKTGSSRLISTSSWRDGQKLVKKILGPAPKMEQKERRPTSNDRSGRERVAKFGGHIGRAESDPKLDVSHKQLPRSSARSRSSRAWSETNIVKSALSLPDNKQEESAALNKDFLPVEIRGILDDLQLDSSAQAVRQEAGEGQNQKSSAPEQVPRSHSPVKRKPDKITANEDPPVISKKRHYDTDEVRQYIVRQQEERRRRQHEEKKAQKEATEQKNKRLQELYRRQREAFSKAKTVPPSDPLVSRRLQETYSKLLLEKTLLEEPARQHVTQDIQARPGYQPSGESDKENKIQERPPSASSSSDLSLSEPPQPLARRDLMEPTWMQPDRLSPRVHSSQAQPLAGTTENLLSHLLHLEHVGILHKDYESVLPAKKSHNTASGPLTFTPQPYLTSQAPHPDALLKPSTSQYKTKLDRIEALKATAASLSSRIESEAKKLAGASINYGSVWNTECDVKLAPQENGPWTKAISPPVKEDIEDAFSARIQKMLGTCVSHAAFDDELPGVGSLSEYKKLPEMIRPQSAISSLRMKSPSPKPGGLLAQLCRRQTDSSSSDIQACSQERAKRSLCSSIDSVSEGPLLSEGSLSEEEERRDARPLLKVAEILKEKEFCAGERNSYEPIKEFQKEAEKFLPLFGHIGGTQSKGPWEELAKGSPHSVINIFTKSYQLYGKGFEDRGTLVSRPLNATATPLSSVSYEDDFVSSPGSGTLTERKSTLESQVDGSSLGVQEEHLSRQFACDLASVDATSQHSSGARSAGSTRSSSASKGKKGKKDKMDWLDSLTGSAQNPLIDEEKVQSDSERGSHPSRKLGTGSKLAVGDSEQTLDAESTLEDLSGHSVSGSSDKGRSQKTPTSPLSPSSQKLLQFDLPGTSLERSKSSVIVPPTTTGFKPTAAFTDVNKTEMASAPGPQRFSPAGLQHRMAAELSYLSALEESVRQLSDVERVRGIALAQQESVSLAQIIKAQQQRHERDLALLKLKAEQEALECQRQLEETRNKTAQVHAESLQQVVKSQREVTEVLQEATCKIAAQQSETARLTTDAARQICEMAELTRTHLADAITTSGVPLATLYDHQRQHFPDFMRKLRTKAETDRISHSASHSQSKEGAVDSKRQKFSPSRDSYSESSRYKSHDYRSSGSSRQDSPSVPPSKENEKPFHGEKMESSVDEQLQTAADDSLRSDSIPSLPDEKDSTSIATEYSLKFDESMTEDEIEEKSFRSLLPSESHRRFNMEKKRGHHDDSDEDASPDKTALSSTKELSMPFSGGQDSFSKFTMEMVRQYMKEEEVRAAHQSSLLRLREKALKEKTKAELAWLEHQKKHLRDKGEDDKMPPLRKKQRGLLLRLQQEKAEIKRLQEANKAARKERQLILKQQEEIERIRQTTIKLQEKLKSAGEKKLGSLADDDEAEDNKAASPGPPGLETRSPSPISISSSETSSIMQKLKSMRSRMDEKFLTKREQKLMQRRQHAEELLEWKRRLDAEEAEIQQMEKQALAAWDKELVKPRTPKKEQESQRTEQKGIASEEGSPMPSYSPRNSESCIPEDLGSPSDLCVPSEARVQAQPGSPEHSTLTEEMVFSQELESTSPSKHSPPKSCLSMSKQESSKASHRTEGHCHLPVKSHQPCYSWSDESLSMTQSETTSDQSDIEGRIRALKDELRKRKSVVEQLKREQRKRQKERLKAQEASLLRQLETYDEFIKKTEGELSQDLDISPTSKFQMKTLSSVSEKPKIKPHPLHRSETAKTWKSVTESERSRGSLASIAEHVDSSLSCSERAISERSLSAYAKRGVELDSRIEHLQASSPDLSSRKAQTESRDSLESAPSLSPVKELNAPDRIYDVSEAKAEDTSQKSEIQEIESMKLESSEVEDACCKQSGGSEVLLKLDLASETLSSKELPSDSANVQQDLDKPATETSHEKEEALKEDQSNHSTDDRSPDIQSAGGIPEQGCRESGDSTCSGQLSVPKESSYSEDFEVSSFRKGISADEISKDDSEGSSPSSLRKDSQSHRDRSQLTRSSRSRATGSGSDEEISECLGEKSLSVHSGVHSERLLELRSPTELMKSKERSDVGHEQGGTEPLPLAATEELLDFHIGDRVLIGSVQPGTLRFKGETDFAKGFWAGVELDKPEGNNNGTYDGIVYFVCKDKHGIFAPPQKISHLLENFDDTDINEDEESYSDEQYQPYNQEQKDIKCLKDRENNIAEYFCEKSLPSMHNTDASVDKDRSLNIETDTSEVLEVHGHQQPSVDPLISYKENKVLVSDATESVPAAAGAATSDNTFSGESKQQQLAEKEENFYSQVLEKPSTPLLDLLTREKNQLEAQLKSSISEEKKSKQQLETVSLLTDSLLQVFVKDTVSQLQQVKKARNEKIQLSNQEFLDQKKVPPQDLPQNTEEQSPSVPSCFLRSELEDEKEEISSPDMCPRPESPVFGASGQEELAKRLAELEISREFLSALDDQDWFDEDFGLSSSHKIQKNKAEETIVPLMAEPKRAPQKPCETLLAVPHTAEEVESLVHNAAEELWKWKELGQDLHGLSLPTTFLGGASKGLDIGSTSRRVYKQAVFDLTKEIFEEIFAEDPNVNQPVWMKPCRINSSYFRRVKNPNNLDEIKHFITTEVLKLLSLKKEPNHKTDWQKMMKFGRKKRDRVDHILVQELHEEEAQWVNYDEDELCVKMQLADGIFETLIKDTIDVLNQISEKQGRMLLV", "sequence_length": 3095, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4af5d30e7e478a70f0486f75a244da0c1fea9b6bc78c3b8a98ee3cf279c00592", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E9Q309.json", "taxon_id": "10090", "uniprot_accession": "E9Q309", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/longifolia-1-2-like-c-terminal-domain-ipr025486.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/longifolia-1-2-like-c-terminal-domain-ipr025486.yaml" } ], "pfam_ids": [ "PF14309" ], "protein_name": "Protein TRM32", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKHLKNESSSPNHGKYNHKLGWLAGMLHVLDFHHWRTKNRPICWKTPRTHSLMRETEEQEPFLDSKINDSKMLSVVADNKPTRPETKLKKTMTTKQVTEYVDFLEILRKEDVFVKIMKDQVQIKSNPRVLPKSGSFPISGSSRPARIQHKQKENWYAPKQNGAVLTLKVPRDTSQECKPISPSHGSADDDHGFNHAIINGFREIKKLLKNTLKDRNRTKKKKKKKVLDVAKDDYVGRYSQLLKQISRREGGDLRSKSLKLSYEEKKSDSRDNKPQFFRRISSLSSLEVLGSFLTDLPRDSSTSNQETRISEDQDTNFGAKKSVLSSESPVRAEKEEKYEVQEERSQENHLDSSNQRILQQEPDSVPSTNKTAEKTETLLPQGLGLSSLEIYKHEEEDEDAYFCYVKKVLKVSGFLENKDNEEKWYSEEQPLNPSLLYELDIQEEETVNDKELLFDLVNEAIVETQNHSQIYFPKTFPYGKRYLDEVWGRVEWSLSGLGAENRDRSLDDIVGRDLLTKSDGWMNLQGESEWLTLELEDLIFDDVLDELLCVY", "sequence_length": 552, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d1d68c6d6e178d548a44104d89815eb8f2858f11d8522f1cb2785e0c8611c58f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4HSD5.json", "taxon_id": "3702", "uniprot_accession": "F4HSD5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/longifolia-1-2-like-c-terminal-domain-ipr025486.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/longifolia-1-2-like-c-terminal-domain-ipr025486.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cap-gly-pf01302.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF01302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cap-gly-pf01302.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4378-pf14309.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14309", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4378-pf14309.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/cap-gly-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00845", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/cap-gly-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5VT06", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01302", "PF14309" ], "protein_name": "Centrosome-associated protein 350", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "fa73af02e928fcaf581b17f4b7c2c07d05aaf0883fa4683b590d9cc7436e239e", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRSSKSKEVPLPNPRNSQSKDTVQADITTSWDALSQTKAALRHIENKLEVAPTSTAVCDSVMDTKKSSTSATRKISRKDGRYLDDSWVNAPISKSTKSRKEKSRSPLRATTLESNVKKNNRVEFREPLVSYREIHGAPSNFSSSHLESKHVYCVDVNEEKTESGNWMIGSREERNIRSCDFESSQSSVINDTVVRFLNDRPAIDALQNSECLIRMGASMRTEEEMPNRTKGSENNLKLSVNNMAHDTDPKALRLTDSSPSSTSTSNSQRLDILKRRQHDVKLEKLKERIRKQWEHSEETNGRGQKLGHIDHPVMVVNVDNSVTAKVRKVATAPPAPAYKGFNPSETKIRTPDGKVWQEAEFQNMSRELYRDLALHFADDISIKEKPAEKSKEKKVVKPVRKVQKVAQLSSTECRTGSSHLISTSSWRDGQKLVKKILGPAPRMEPKEQRTASSDRGGRERTAKSGGHIGRAESDPRLDVLHRHLQRNSERSRSKSRSENNIKKLASSLPDNKQEENTALNKDFLPIEIRGILDDLQLDSTAHTAKQDTVELQNQKSSAPVHAPRSHSPVKRKPDKITANEDPPVISKRRHYDTDEVRQYIVRQQEERKRKQNEEKKAQKEATEQKNKRLQELYRKQKEAFTKVKNVPPSEPSATRRLQETYSKLLLEKTLLEEPSHQHVTQETQAKPGYQPSGESDKENKVQERPPSASSSSDMSLSEPPQPLARKDLMESTWMQPERLSPQVHHSQPQPFAGTAGSLLSHLLSLEHVGILHKDFESILPTRKNHNMASRPLTFTPQPYVTSPAAYTDALLKPSASQYKSKLDRIEALKATAASLSSRIESEAKKLAGASINYGSAWNTEYDVQQAPQEDGPWTKAVTPPVKDDNEDVFSARIQKMLGSCVSHATFDDDLPGVGNLSEFKKLPEMIRPQSAISSFRVRSPGPKPEGLLAQLCKRQTDSSSSDMQACSQDKAKISLGSSIDSVSEGPLLSEGSLSEEEGDQDGQPLLKVAEILKEKEFCPGERNSYEPIKEFQKEAEKFLPLFGHIGGTQSKGPWEELAKGSPHSVINIFTKSYQLYGKGFEDKLDRGTSTSRPLNATATPLSGVSYEDDFVSSPGTGTSTEKKSTLEPHSTLSPQEDHSNRKSAYDPSSVDVTSQHSSGAQSAASSRSSTSSKGKKGKKEKTEWLDSFTGNVQNSLLDEEKAERGSHQGKKSGTSSKLSVKDFEQTLDTDSTLEDLSGHSVSVSSDKGRSQKTPTSPLSPSSQKSLQFDVAGTSSERSKSSVMPPTITGFKPNAPLTDLNPAASRTTTENMAPIPGSKRFSPAGLHHRMAAELSYLNAIEESVRQLSDVERVRGISLAQQESVSLAQIIKAQQQRHERDLALLKLKAEQEALESQRQLEETRNKAAQVHAESLQQVVQSQREVTEVLQEATCKIAAQQSETARLTTDAARQICEMAELTRTHISDAVVASGAPLAILYDHQRQHLPDFVKQLRTRTETDRKSPSVSLSQSKEGTLDSKHQKYSASYDSYSESSGYKNHDRRSSSGSSRQESPSVPSCKENEKKLNGEKIESSIDEQVQTAADDSLRSDSVPSLPDEKDSTSIATEYSLKFDESMTEDEIEEQSFRSLLPSESHRRFNMEKRRGHHDDSDEEASPEKTTLSTAKELNMPFSGGQDSFSKFTMEMVRQYMKEEEMRAAHQSSLLRLREKALKEKTKAELAWLEHQKKHLRDKGEDDKMPPLRKKQRGLLLRLQQEKAEIKRLQEANKAARKERQLILKQQEEIEKIRQTTIKLQEKLKSAGESKLDSHSDDDTKDNKATSPGPTDLETRSPSPISISSSETSSIMQKLKKMRSRMDEKFLTKREQKLMQRRQHAEELLEWKRRLDAEEAEIRQMEKQALAAWDKELIKPKTPKKELEDQRTEQKEIASEEESPVPLYSHLNSESSIPEELGSPAVEYVPSESIGQEQPGSPDHSILTEEMICSQELESSTSPSKHSLPKSCTSVSKQESSKGSHRTGGQCHLPIKSHQHCYSWSDESLSMTQSETTSDQSDIEGRIRALKDELRKRKSVVNQLKKEQKKRQKERLKAQEASLIKQLESYDEFIKKTEAELSQDLETSPTAKPQIKTLSSASEKPKIKPLTPLHRSETAKNWKSLTESERSRGSLESIAEHVDASLSGSERSVSERSLSAYAKRVNEWDSRTEDFQTPSPVLRSSRKIREESGDSLENVPALHLLKELNATSRILDMSDGKVGESSKKSEIKEIEYTKLKKSKIEDAFSKEGKSDVLLKLVLEQGDSSEILSKKDLPLDSENVQKDLVGLAIENLHKSEEMLKERQSDQDMNHSPNIQSGKDIHEQKNTKEKDLSWSEHLFAPKEIPYSEDFEVSSFKKEISAELYKDDFEVSSLLSLRKDSQSCRDKPQPMRSSTSGATSFGSNEEISECLSEKSLSIHSNVHSDRLLELKSPTELMKSKERSDVEHEQQVTESPSLASVPTADELFDFHIGDRVLIGNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISHIPENFDDYVDINEDEDCYSDERYQCYNQEQNDTEGPKDREKDVSEYFYEKSLPSVNDIEASVNRSRSLKIETDNVQDISGVLEAHVHQQSSVDSQISSKENKDLISDATEKVSIAAEDDTLDNTFSEELEKQQQFTEEEDNLYAEASEKLCTPLLDLLTREKNQLEAQLKSSLNEEKKSKQQLEKISLLTDSLLKVFVKDTVNQLQQIKKTRDEKIQLSNQELLGDDQKKVTPQDLSQNVEEQSPSISGCFLSSELEDEKEEISSPDMCPRPESPVFGASGQEELAKRLAELELSREFLSALGDDQDWFDEDFGLSSSHKIQKNKAEETIVPLMAEPKRVTQQPCETLLAVPHTAEEVEILVHNAAEELWKWKELGHDLHSISIPTKLLGCASKGLDIESTSKRVYKQAVFDLTKEIFEEIFAEDPNLNQPVWMKPCRINSSYFRRVKNPNNLDEIKSFIASEVLKLFSLKKEPNHKTDWQKMMKFGRKKRDRVDHILVQELHEEEAQWVNYDEDELCVKMQLADGIFETLIKDTIDVLNQISEKQGRMLLV", "sequence_length": 3117, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "fa73af02e928fcaf581b17f4b7c2c07d05aaf0883fa4683b590d9cc7436e239e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VT06.json", "taxon_id": "9606", "uniprot_accession": "Q5VT06", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-monopolar-cell-growth-go0051513.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051513", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-monopolar-cell-growth-go0051513.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/longifolia-1-2-like-c-terminal-domain-ipr025486.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/longifolia-1-2-like-c-terminal-domain-ipr025486.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4378-pf14309.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14309", "section": "canonical_examples", "url": 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"data/traits/structure/homologous_superfamily/cath/ton-0340-3-90-1640-20.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.90.1640.20", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ton-0340-3-90-1640-20.yaml" } ], "pfam_ids": [ "PF07286", "PF14336" ], "protein_name": "D-glutamate cyclase, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTISFLLRSCLRSAVRSLPKAALIRNTSSMTEGLQPASVVVLPRSLAPAFESFCQGNRGPLPLLGQSEAVKTLPQLSAVSDIRTICPQLQKYKFGTCTGILTSLEEHSEQLKEMVTFIIDCSFSIEEALEQAGIPRRDLTGPSHAGAYKTTVPCATIAGFCCPLVVTMRPIPKDKLERLLQATHAIRGQQGQPIHIGDPGLLGIEALSKPDYGSYVECRPEDVPVFWPSPLTSLEAVISCKAPLAFASPPGCMVMVPKDTASSASCLTPEMVPEVHAISKDPLHYSIVSAPAAQKVRELESTIAVDPGNRGIGHLLLKDELLQAALSLSHARSVLVTTGFPTHFNHEPPEETDGPPGAIALAAFLQALGKETAMVVDQRALNLHMRIVEDAIRQGVLKTPIPILTYQGRSMEDARAFLCKDGDPKSPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDIFLAAQKIPGISSTGVGDGGNELGMGKVKAAVKKHIRNGDVIACDVEADFAVIAGVSNWGGYALACALYILNSCQVHERYLRRATGPSRRAGEQSWIQALPSVAKEEKMLGILVENQVRSGVSGIVGMEVDGLPFHDVHAEMIRKLVGATTVHM", "sequence_length": 617, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7db65f8ea5feea7443a10d9f2cde19157d450539e7e112d4f2772927fbb72c7c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BH86.json", "taxon_id": "10090", "uniprot_accession": "Q8BH86", "uniprot_release": "2026_03" } ], "pfam_id": "PF14336", "short_name": "GLUCM-like_C", 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"example_count": 0, "examples": [], "pfam_id": "PF14356", "short_name": "DUF4403", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14357", "short_name": "DUF4404", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14358", "short_name": "DUF4405", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14359", "short_name": "DUF4406", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14362", "short_name": "DUF4407", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4408-ipr025520.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025520", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4408-ipr025520.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4408-pf14364.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14364", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4408-pf14364.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf761-pf05553.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05553", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf761-pf05553.yaml" } ], "pfam_ids": [ "PF05553", "PF14364" ], "protein_name": "Pathogen-associated molecular patterns-induced protein A70", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELLTTVASFFTPTTLFLLLNLMIGTIVVTSRLGSGSRKHYQHHDGFGSGHAPAPLARAPSIIDRVKSINFHLYKFPHPETELFSMTAHHDIIGSDLHVYPDPNPAPLQRAPSLLDRVKSINMSYFKFPHDVTGSDPHSHSHSHLDLHPDPAPAPLQRAPSLLDRVKSINMSYFKFQQYNPEENDYAHHTEPTRFESIPTRMGRVDPIDISKFRIPEEDQPTGTGVNSQINPPGLTRAPSILERVKSIKLSSFYRSDPDLDQKQNPDPVLHEEHKHVRSKSESKKPVKKKKKALTKMTKSASEKSGFGFAGSHAEAPETVESLERRRPDTTRVERSTSFGDGEDGVDAKASDFINKFKQQLKLQRLDSILRYKEMLKAH", "sequence_length": 379, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2c8ebe010705711397f7cedd6f01ce875399436e8dfccfce329f365dfe93f60b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4K956.json", "taxon_id": "3702", "uniprot_accession": "F4K956", "uniprot_release": "2026_03" } ], "pfam_id": "PF14364", "short_name": "DUF4408", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14365", "short_name": "Neprosin_AP", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14366", "short_name": "DUF4410", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14367", "short_name": "DUF4411", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14371", "short_name": "DUF4412", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hat-like-rnase-h-pf14372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hat-like-rnase-h-pf14372.yaml" } ], "pfam_ids": [ "PF05699", "PF14372", "PF27039", "PF27041" ], "protein_name": "Zinc finger BED domain-containing protein RICESLEEPER 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEETSNDNLVVQGNEIVPSNGEALAEEVQGDELVLAEDLIQGDEVQGNELVSAEMSIPPTSRRRRKKSLVWEHFTIEAVSGGATRACCKLCKQTFAYSSGSKIAGTSHLKRHITLGSCPKIKNQEHKLLLTPAGGTDNDGEGTVERPSKRRYRYTGYANAAFDQERSCSYLAKMIILHDYPLHIVQQPAFTTFIDSLQPRFRVVDVETMEWEVYAVYQKEKENLMQAFNTMPGRISLAIGLWTTSQTLGYVSLAGQFIDSEWKMHRRMLNFMMVSSPHSENALSEAISTSLSDWNMKDKLFTITLDNDCSSHDIYSANLRDYLSNKNNLMLKGQLFVVRCYAHILNAVAQDVIASIHGVIYNIRESIKFIKASPSCEEKFAEIALQLEIPSTKTLCLDVTTQWNTTYLMLLAALDYKQAFSTLETSDDNYNEAPSAEDWKKVEAACNYLKLLYDSAHSIMAAANPTSNLFFHEAWKLQLELSNATGREDPVFSSIAKDMHERFDKYWKDCNLVLAIAVVMDPRFKMKLVEFSYSKIYGVEAAKYVKVVDDAVHELYNEYVAQPLPLTPAYVEQGGGNNAPASENSTQATAPSTGDGLVDFDMYLSEIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKYPTLSKMARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSSRPEIVEALVCAKDWLQYLPATPEAPSTALVKVDAA", "sequence_length": 722, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3de63e4e984ea208d388ec537e7b780285f76b2c923750c0085dc8dd989166f3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B9FJG3.json", "taxon_id": "39947", "uniprot_accession": "B9FJG3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hat-like-rnase-h-pf14372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hat-like-rnase-h-pf14372.yaml" } ], "pfam_ids": [ "PF05699", "PF14372", "PF27039", "PF27041" ], "protein_name": "Zinc finger BED domain-containing protein RICESLEEPER 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTEETGNDFQMVQGYEIVPSNEEAHAEEVQGDELVLAEDLAQGDEVQVNGLVSAEMSTPPTSRRRRKKSLVWEHFTIEAVSGGATRACCKLCKQTFAYSSGSKIAGTSHLKRHITLGSCPIIKNQEHKLALTPAVGTDNDGEGTVERPSKRRYRYTGYANAAFDQDRSCSYLAKMIILHDYPLHIVQQPAFTTFIDSLQPRFRVVDVETMEGEVYAVYQKEKENLMQAFSTMPGRISLTIGLWTTSQTLGYVSLAGQFIDSEWKIHRRMLNFMMVSSPHSENALSEAISTSLSDWNMKDKLFTITLDNDCSSHDIYSANLRDYLSNKNNLMLKGQLFVVRCYAHILNAVAQDVIASIHGVIYNIRESIKFIKASPSREEKFAEIALQLEIPSTKTLCLDVTTQWNTTYLMLLAALDYKQAFSTLETSDDNYNEAPSAEDWKKVEAACNYLKLLYDSAHSIMAAANPTSNLFFHEAWKLQLELSNATGHEDPVFSSIAKDMHERFDKYWKDCNLVLAIAVVMDPRFKMKLVEFSYSKIYGVEAAKYVKVVDDAVHELYKEYVAQPLPLTPAYVEQGDGNNAPASENGTQATAPSTGDGLVDFDMYLSEIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKFPTLSRMARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSLRPEIVEALVCAKDWLQYLPATPEAPSTTLVKVDAP", "sequence_length": 722, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "988294411dc096a6cd9cd444ca9f5a952aa99af80c86d375558d0c89949996aa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6AVI0.json", "taxon_id": "39947", "uniprot_accession": "Q6AVI0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hat-c-terminal-dimerisation-domain-ipr008906.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR008906", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hat-c-terminal-dimerisation-domain-ipr008906.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hat-like-transposase-like-ipr025525.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025525", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hat-like-transposase-like-ipr025525.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hat-like-rnase-h-pf14372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hat-like-rnase-h-pf14372.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zbed1-rnase-like-helical-pf27039.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27039", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zbed1-rnase-like-helical-pf27039.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zbed1-rnase-like-pf27041.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27041", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zbed1-rnase-like-pf27041.yaml" } ], "pfam_ids": [ "PF05699", "PF14372", "PF27039", "PF27041" ], "protein_name": "Zinc finger BED domain-containing protein DAYSLEEPER", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVYNDDTEMRSPETQPIKETALEVYNDTAEIRSPETQPIEETALEVYNDTEMVSPETQPIKRRKKKSMVWEHFTIEAVEPNCRRAFCKGCNQSFAYSNGNKVAGTSHLKRHIFKGTCPALIHTHDNDNNPLMSTPYTPKTDTPRRRYRSQNNASPYVAFNQDKCRQEIAKMIIMHDYPLHMVQHPGFVSFVQSIQPHFDAVSFNNVQGDCVATYLAEKQNVMKSLEGIPGRFCLTLDFWTSKLTLGYVFITAHYIDSDWKIQKKLLNVLMESYPEADEALSLAVANCVSEWGLEGKLFNVTFNHPASNSAVENIRPQLCIKNPGILDGQLVIGNCVARTFGSLAKDVLEKGKDVIKNIRDSVKHVKTSESHEERFTELKEQLQVPSEKVLSLDDQTQWNTTYMMLVAASELKEVFSCLDTADPDYKKPPSAEDWRHVEALCTFLKPLFEAVSTLQSTGNPSAVTFFHEVWKTQSDLSRAIAGEDPFVTGIAKTMQEKVDKYWRDCSLVLAMAVVMDPRFKMKLVEFSFSKIFGEDAGKNIKTVDDGIHELFTEYMALPSPQNTTSEGGKADGLSDFDTYIMETTGQNLKSELDQYLDETLLPRVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAREWLLESNASSSAAAQNASATIKSEA", "sequence_length": 696, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d01c3d2a816d4921e21860d21936024e3336115fba01b3d15b5602801153ceb8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9M2N5.json", "taxon_id": "3702", "uniprot_accession": "Q9M2N5", "uniprot_release": "2026_03" } ], "pfam_id": "PF14372", "short_name": "hAT-like_RNase-H", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf913-pf06025.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf913-pf06025.yaml" } ], "pfam_ids": [ "PF00632", "PF02825", "PF06012", "PF06025", "PF14377", "PF22562" ], "protein_name": "E3 ubiquitin-protein ligase HUWE1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKVDRTKLKKTPTEAPADCRALIDKLKVCNDEQLLLELQQIKTWNIGKCELYHWVDLLDRFDGILADAGQTVENMSWMLVCDRPEKEQLKMLLLAVLNFTALLIEYSFSRHLYSSIEHLTTLLASSDMQVVLAVLNLLYVFSKRSNYITRLGSDKRTPLLTRLQHLAESWGGKENGFGLAECCRDLQMLKYPPSATTLHFEFYADPGAEVKIEKRTTSNTLHYIHIEQLDKISESPSEIMESLTKMYSIPKDKQMLLFTHIRLAHGFSNHRKRLQAVQARLHAISILVYSNALQESANSILYNGLIEELVDVLQITDKQLMEIKAASLRTLTSIVHLERTPKLSSIIDCTGTASYHGFLPVLVRNCIQAMIDPSMDPYPHQFATALFSFLYHLASYDAGGEALVSCGMMEALLKVIKFLGDEQDQITFVTRAVRVVDLITNLDMAAFQSHSGLSIFIYRLEHEVDLCRKECPFVIKPKIQRPSTTQEGEEMETDMDVADVTMESSPGSSISMEHRLDVELRASSSNSSTSISGPGPGPGPGPGPGPGPGPGPGPGPGLGPSLGPGPGPGPRPGVQCIPQRAALLKSMLNFLKKAIQDPAFSDGIRHVMDGSLPTSLKHIISNAEYYGPSLFLLATEVVTVFVFQEPSLLSSLQDNGLTDVMLHALLIKDVPATREVLGSLPNVFSALCLNARGLQSFVQCQPFERLFKVLLSPDYLPAMRRRRSSDPLGDTASNLGSAVDELMRHQPTLKTDATTAIIKLLEEICNLGRDPKYICQKPSIQKADGTTSAPPPRSNHAAEEASSEDEEEEEVQAMQSFNSAQQNETEPNQQVVGTEERIPIPLMDYILNVMKFVESILSNNTTDDHCQEFVNQKGLLPLVTILGLPNLPIDFPTSAACQAVAGVCKSILTLSHEPKVLQEGLLQLDLILSSLEPLHRPIESPGGSVLLRELACAGNVADATLSAQATPLLHALTAAHAYIMMFVHTCRVGQSEIRSISVNQWGSQLGLSVLSKLSQLYCSLVWESTVLLSLCTPNSLPSGCEFGQADMQKLVPKDEKAGTTQGGKRSDGEQDGTAGSMDASAQGLLEGIELDGDTLAPMETDEPSSSDSKGKSKITPAMAARIKQIKPLLSASSRLGRALAELFGLLVKLCVGSPVRQRRSHHAASTTTAPTPAARSTASALTKLLTKGLSWQPPPYTPTPRFRLTFFICSVGFTSPMLFDERKYPYHLMLQKFLCSGGHNALFETFNWALSMGGKVPVSEGLEHSDLPDGTGEFLDAWLMLVEKMVNPTTVLESPHSLPAKLPGGVQSFPQFSALRFLVVTQKAAFTCIKNLWNRKPLKVYGGRMAESMLAILCHILRGEPVIRERLSKEKEGSRGEEEAGQEEGGSRREPQVNQQQLQQLMDMGFTREHAMEALLNTSTMEQATEYLLTHPPPIIGGVVRDLSMSEEDQMMRAIAMSLGQDIPMDQRAESPEEVACRKEEEERKAREKQEEEEAKCLEKFQDADPLEQDELHTFTDTMLPGCFHLLDELPDTVYRVCDLIMTAIKRNGADYRDMILKQVVNQVWEAADVLIKAALPLTTSDTKTVSEWISQMATLPQASNLATRILLLTLLFEELKLPCAWVVESSGILNVLIKLLEVVQPCLQAAKEQKEVQTPKWITPVLLLIDFYEKTAISSKRRAQMTKYLQSNSNNWRWFDDRSGRWCSYSASNNSTIDSAWKSGETSVRFTAGRRRYTVQFTTMVQVNEETGNRRPVMLTLLRVPRLSKNSKSSNGQELEKTLEESKETDIKRKENKGNDIPLALESTNTEKDASLEETKIGEILIQGLTEDMVTVLIRACVSMLGVPVDPDTLHATLRLCLRLTRDHKYAMMFAELKSTRMILNLTQSSGFNGFTPLVTLLLRHIIEDPCTLRHTMEKVVRSAATSGAGSTTSGVVSGSLGSREINYILRVLGPAACRNPDIFTEVANCCIRIALPAPRGSGTASDDEFENLRIKGPNAVQLVKTTPLKPSSLPVIPDTIKEVIYDMLNALAAYHAPEEADKSDPKPGGMTQEVGQLLQDMGDDVYQQYRSLTRQSSDFDTQSGFSLNSQVFAADGAPAETSTTGTSQGEGASTPEETREGKKDKEGDRTSEEGKQKGKGSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPHTQNAEDKDTPALARLFLASLAAAGSGTDAQVALVNEVKAALGRALAMAESTEKHARLQAVMCIISTIMESCPSTSSFYSSATAKTQHNGMNNIIRLFLKKGLVNDLARVPHSLDLSSPNMANTVNAALKPLETLSRIVNQPSSLFGSKSASSKSKSEQDAQGASQDSSSHQQDPGEPGEAEVQEEDHDVTQTEVADGDIMDGEAETDSVVIAGQPEVLSSQEMQVENELEDLIDELLERDGGSGNSTIIVSRSGEDESQEDVLMDEAPSNLSQASTLQANREDSMNILDPEDEEEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGSEMELDEDYPDMNASPLVRFERFDREDDLIIEFDNMFSSATDIPPSPGNIPTTHPLMVRHADHSSLTLGSGSSTTRLTQGIGRSQRTLRQLTANTGHTIHVHYPGNRQPNPPLILQRLLGPSAAADILQLSSSLPLQSRGRARLLVGNDDVHIIARSDDELLDDFFHDQSTATSQAGTLSSIPTALTRWTEECKVLDAESMHDCVSVVKVPIVNHLEFLRDEELEERREKRRKQLAEEETKIIDKGKEDKENRDQSAQCTVSKTNDSTEQNVSDGTPMPDSYPTTPSSTDAPTSESKETLGTLQPSQQQPTLPPPPSLGEISQELQSPAEEVGNSTQLLMPIELEELGPTRPSGEAETTQMELSPAPTITSLSPERAEDSDALTAVSSQLEGSPMDTSSLASCTLEEAVGDTPAAGSSEQPTAGSSTPGDAPSVGADVQGRPDVSRESTQPPEDSSPPASSESSSTRDSAVAISGADSRGILEEPLPSTSSEEEDPLAGISLPEGVDPSFLAALPDDIRREVLQNQLGIRPPTRTAPSTNSSTPAVVGNPGVTEVSPEFLAALPPAIQEEVLAQQRAEQQRRELAQNASSDTPMDPVTFIQTLPSDLRRSVLEDMEDSVLAVMPPDIAAEAQALRREQEARQRQLMHERLFGHSSTSALSAILRSPAFTSRLSGNRGVQYTRLAVQRGGTFQMGGSSSHNRPSGSNVDTLLRLRGRLLLDHEALSCLLVLLFVDEPKLNTSRLHRVLRNLCYHAQTRHWVIRSLLSILQRSSESELCIETPKLSTSEERGKKSSKSCASSSHENRPLDLLHKMESKSSNQLSWLSVSMDAALGCRTNIFQIQRSGGRKHTEKHASSGSTVHIHPQAAPVVCRHVLDTLIQLAKVFPSHFTQQRTKETNCESDRERGSKQACSPCSSQSSSSGICTDFWDLLVKLDNMNVSRKGKNSVKSVPVSAGGEGETSLHSLEASPLGQLMNMLSHPVIRRSSLLTEKLLRLLSLISIALPENKVSEVQTNSSNSGSSTAATSNTSTTTTTTTATAPTPTPPAATTPVTSAPALVAATAISTITVAASTTVTTPTTATTTVSTSTTKGNKSPAKVGEGGSSSVDFKMVSSGLTENQLQLSVEVLTSHSCSEEGLEDAANVLLQLSRGDSGTRDTVLKLLLNGARHLGYTLCKQIGTLLAELREYNLEQQRRAQCETLSPDGLPEEQPQTTKLKGKMQSRFDMAENVVIVASQKRPLGGRELQLPSMSMLTSKTSTQKFFLRVLQVIIQLRDDTRRANKKAKQTGRLGSSGLGSASSIQAAVRQLEAEADAIIQMVREGQRARRQQQAATSESSNQSETSVRREESPMDVDQPSPSAQDTQSIVVSDGTPQGEKEKEERPPELPLLSEQLSLDELWDMLGECLKELEESHDQHAVLVLQPAVEAFFLVHATERESKPPVRDTRESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSREPSSMHISSSLPPDTQKFLRFAETHRTVLNQILRQSTTHLADGPFAVLVDYIRVLDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA", "sequence_length": 4454, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60048164b6f98ce69e087742e64e750122c0b55e098ccb427020e9eecf5264ac", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P51593.json", "taxon_id": "10116", "uniprot_accession": "P51593", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf908-pf06012.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf908-pf06012.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q03280", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00632", "PF06012", "PF06025", "PF14377" ], "protein_name": "E3 ubiquitin-protein ligase TOM1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "93818cb1b0a397b84cfc3466e2efc65c220a0e7d35ef8bf050f6e211e5145a28", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVLFTRCEKARKEKLAAGYKPLVDYLIDCDTPTFLERIEAIQEWDRSRDDLYVWIPILDRMDGLLLKVAEKYKYKQDPKKECEVKLVEMEAHDVDYCLKMLKFTRRLLLNTENRFVYSSGDVLMYLLNCPNFTIKLAVMRILAILGERFVIAREKIVAHNIFGDHNLRKKTLKLALSLSSSVMDEDGEHFSLVDLYFDKKKVPQKWRKLRFTHYTSNDFKKSSQQKNNINETQTSIKKVTMTTQELCEHSLQQIFDKGMALLPAESWFDFSIKASVAKAFSDDSGENIDLRNIIIETKLNAIAFVNTIFSPPQVSSKLFELDPYAFNSLTDLISLSETKIPKELRTDALFTLECISLKHVWCSDIIRNLGGNISHGLLFQILRYIAKTLREATDEIDEEYNVRFFYLISNLADVKPLHESLFAAGLIPTLLEIVSIRNCPYKRTLASATHLLETFIDNSETTTEFIENDGFTMLITSVANEIDFTLAHPETWQPPKYSVVYYSISFRELAYIRSLLKLVLKLLSTDSGDRIRNLIDSPILVSLKKILENKLVFGLTLITYTLDVVQKVINSEPTIYPVLVEAGLIPYVIDNFPKLIGPSAELLSLLPDVVSAICLNPEGLKQVKEKGLINNLFDFLLDADHARILTGGDRSTEYGTDIDELARHYPDLKANIVEALCNVIRKMPSTFRNEREFLFTSPKDQKYFFHRKNEEILTDKEEHEPAYWELLDKGTMLDTFTSVLFGMSLGNGSFSQVPQHLEARDFLAIIFMENPPYEYFTSVAISNVTEVLQYLDEKYEDYAFMDVMKVLNDQLENLNDFLNSPNDRSFFLERDGENSVRSCHSKLCRLAAILNIVTNVYIDLTTLSCKRIMQIYSYFDKRGFSLIKNLKLLFQKCALEEMYIRQHMPDSVITETMPLPIVDVSGDGPPLQIYIDDPKKGDQKGKITSVKTRNTLQMRTILYTLQSNTAILFRCFLRLSHSRNMDLEHKDLTTEVHIFENVVENVIEMLKATELEGHLPYILVLLNFNTFVFTIPKASPNSTEILQTIPAYIFYQKGGYLLYLHIIRDLFTRMTKIKDLSSLDNINYIDESNGILTLSCLINALTFYNKSMQTETMENVQSIGKYYVSIDDDYNIMKALTVPIKVMALAMILDLDKSDSLFKTQSRNVPYSVFKQLLSMLKNIFTNVNIYTKELYELHWDLIFPPIKKISLFEQVGIPGDVAANYLTDTGDDLPADNSIGLFSPEQWEKYKKLIGEDKSIYYPQPMQAQYYKGCSSKELDELRDTFFNDGLPSRIFTVLPFYPKLVNAFAKTLLQIFTKYDEPTEVFAGRILDRILETDLDDPATLSSLIHLFGIFLNEKYIYQKASHLMQRFIEYLEKSLKPEHVNTPWFSKALYVYEIILAKSELPHLEELSKDVLLRYPLLSMAKVFRIPDPMKQKLFDILIRVSDISNFYSALATSRILIFYSRDELYANNIARSGILSRLLKVIGSFQKLDKINFLESSFLLLTRRCFETTENVDALIRAEINRSFTARPLGGGDDAVRELTTILEEKAHVVMRSPSQFIDVLCETARFHEFDDQGALVDYSLKRFLGEKDKNTQASSTEKSDIYERTGIMHLLLSQLMAASEKDWLSEPANSSDLPENKKAQLDPSRNPVCAYMIFLLKLLVELVSSYNQCKFEFLTFSRRNTYAERPRPRTTAINFFLYRLLDKPVGTDHDKHEAKRREVIGMLARSVIIGFLATVQDDRTTKTDVKLADPHMNFIRKFAIEAIIKAIRNATSSSKLLESNHLKLDMWFRIITSMVYVQAPYLRQLLDSNKVEADQYQLCKLVIDLGLPSVITEAMASIDLNYPFSKKIFNVAVEALNTISSTRNNFSEHFKIEDHDEVEDEVDESDKEEIPDMFKNSALGMYDVEDIEEDDDDDTSLIGDDDAMAFVDSDNGFEVVFSDEDDDMGEEDADDARSDSEENELSSEMQSSTADGTDVDYEVDDADGLIINIDQPSGDDEEMADYDANISHSSHSENEDDASMDVIEVYDDELSSGYDVDLSDYDVDESDWDSGLSSLSISDEDSESSEDEPINSTRMGDSRRRWLIAEGVELTDDSQGESEEDDRGVFRGIEHIFSNENEPLFRVHDEMRHRNHHRSINRTHFHSAMSAPSLSLLNRGRRNQSNLINPLGPTGLEQVENDISDQVTVAGSGSRPRSHHLHFSEVLVSGSFFDEPVLDGIILKSTVSRWKDIFDMFYDSKTYANCIIPTVINRLYKVSLALQKDLENKREQEKLKNKNLLFNEAKVESHNSSDAISVEQDDIQESNVTHDDHEPVYVTIQGSEVDIGGTDIDPEFMNALPDDIRADVFAQHVRERRAEARLNSDHNVHSREIDSDFLEAIPEDIREGILDTEAEEQRMFGRIGSSADVIRADDDVSNNDEEVENGLDHGNSNDRNNADPEKKKPARIYFAPLIDRAGIASLMKSVFISKPYIQREIYHELFYRLCSSKQNRNDLMNTFLFILSEGIIDQHSLEKVYNIISSRAMGHAKTTTVRQLPSDCTPLTVANQTIEILQSLIDADSRLKYFLIAEHDNLIVNKANNKSRKEALPDKKLRWPLWHLFSLLDRKLITDESVLMDLLTRILQVCTKTLAVLSTSSNGKENLSKKFHLPSFDEDDLMKILSIIMLDSCTTRVFQQTLNIIYNLSKLQGCMSIFTKHLVSLAISIMSKLKSALDGLSREVGTITTGMEINSELLQKFTLPSSDQAKLLKILTTVDFLYTHKRKEEERNVKDLQSLYDKMNGGPVWSSLSECLSQFEKSQAINTSATILLPLIESLMVVCRRSDLSQNRNTAVKYEDAKLLDFSKTRVENLFFPFTDAHKKLLNQMIRSNPKLMSGPFALLVKNPKVLDFDNKRYFFNAKLKSDNQERPKLPITVRREQVFLDSYRALFFKTNDEIKNSKLEITFKGESGVDAGGVTREWYQVLSRQMFNPDYALFLPVPSDKTTFHPNRTSGINPEHLSFFKFIGMIIGKAIRDQCFLDCHFSREVYKNILGRPVSLKDMESLDPDYYKSLVWILENDITDIIEETFSVETDDYGEHKVINLIEGGKDIIVTEANKQDYVKKVVEYKLQTSVKEQMDNFLVGFYALISKDLITIFDEQELELLISGLPDIDVDDWKNNTTYVNYTATCKEVSYFWRAVRSFDAEERAKLLQFVTGTSKVPLNGFKELSGVNGVCKFSIHRDFGSSERLPSSHTCFNQLNLPPYESYETLRGSLLLAINEGHEGFGLA", "sequence_length": 3268, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "93818cb1b0a397b84cfc3466e2efc65c220a0e7d35ef8bf050f6e211e5145a28", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q03280.json", "taxon_id": "559292", "uniprot_accession": "Q03280", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q6R3M4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00817", "PF11799", "PF14377", "PF21999" ], "protein_name": "DNA polymerase iota", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a4401f703fc2fe13974194cb1add62fdcd3f01fc5ea7d946d5cdee0ab6414bfe", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEPLHAGAAGSSRAVCSQGPPTQISSSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYLVVTCNYEARKLGVRKLMNVRDAKEKCPQLVLVNGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQQLPSEEVPSVTVFGHVYNNQSVNLHNIMHRRLVVGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKRLEVLGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPVTPSGPPQSFSEEDTFKKCSSEVEAKAKIEELLSSLLTRVCQDGRKPHTVRLVIRRYSDKHCNRESRQCPIPSHVIQKLGTGNHDSMPPLIDILMKLFRNMVNVKMPFHLTLMSVCFCNLKALSSAKKGPMDCYLTSLSTPAYTDKRAFKVKDTHTEDSHKEKEANWDCLPSRRIESTGTGESPLDATCFPKEKDTSDLPLQALPEGVDQEVFKQLPADIQEEILYGKSRENLKGKGSLSCPLHASRGVLSFFSTKQMQASRLSPRDTALPSKRVSAASPCEPGTSGLSPGSTSHPSCGKDCSYYIDSQLKDEQTSQGPTESQGCQFSSTNPAVSGFHSFPNLQTEQLFSTHRTVDSHKQTATASHQGLESHQGLESRELDSAEEKLPFPPDIDPQVFYELPEEVQKELMAEWERAGAARPSAHR", "sequence_length": 717, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a4401f703fc2fe13974194cb1add62fdcd3f01fc5ea7d946d5cdee0ab6414bfe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6R3M4.json", "taxon_id": "10090", "uniprot_accession": "Q6R3M4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf908-pf06012.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf908-pf06012.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf913-pf06025.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf913-pf06025.yaml" } ], "pfam_ids": [ "PF00632", "PF02825", "PF06012", "PF06025", "PF14377", "PF22562" ], "protein_name": "E3 ubiquitin-protein ligase HUWE1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKVDRTKLKKTPTEAPADCRALIDKLKVCNDEQLLLELQQIKTWNIGKCELYHWVDLLDRFDGILADAGQTVENMSWMLVCDRPEKEQLKMLLLAVLNFTALLIEYSFSRHLYSSIEHLTTLLASSDMQVVLAVLNLLYVFSKRSNYITRLGSDKRTPLLTRLQHLAESWGGKENGFGLAECCRDLQMLKYPPSATTLHFEFYADPGAEVKIEKRTTSNTLHYIHIEQLDKISESPSEIMESLTKMYSIPKDKQMLLFTHIRLAHGFSNHRKRLQAVQARLHAISILVYSNALQESANSILYNGLIEELVDVLQITDKQLMEIKAASLRTLTSIVHLERTPKLSSIIDCTGTASYHGFLPVLVRNCIQAMIDPSMDPYPHQFATALFSFLYHLASYDAGGEALVSCGMMEALLKVIKFLGDEQDQITFVTRAVRVVDLITNLDMAAFQSHSGLSIFIYRLEHEVDLCRKECPFVIKPKIQRPSTTQEGEEMETDMDGVQCIPQRAALLKSMLNFLKKAIQDPAFSDGIRHVMDGSLPTSLKHIISNAEYYGPSLFLLATEVVTVFVFQEPSLLSSLQDNGLTDVMLHALLIKDVPATREVLGSLPNVFSALCLNARGLQSFVQCQPFERLFKVLLSPDYLPAMRRRRSSDPLGDTASNLGSAVDELMRHQPTLKTDATTAIIKLLEEICNLGRDPKYICQKPSIQKADGTATAPPPRSNHAAEEASSEDEEEEEVQAMQSFNSAQQNETEPNQQVVGTEERIPIPLMDYILNVMKFVESILSNNTTDDHCQEFVNQKGLLPLVTILGLPNLPIDFPTSAACQAVAGVCKSILTLSHEPKVLQEGLLQLDLILSSLEPLHRPIESPGGSVLLRELACAGNVADATLSAQATPLLHALTAAHAYIMMFVHTCRVGQSEIRSISVNQWGSQLGLSVLSKLSQLYCSLVWESTVLLSLCTPNSLPSGCEFGQADMQKLVPKDEKAGTTQGGKRSDGEQDGTAGSMDASAQGLLEGIELDGDTLAPMETDEPSSSDSKGKSKITPAMAARIKQIKPLLSASSRLGRALAELFGLLVKLCVGSPVRQRRSHHAASTTTAPTPAARSTASALTKLLTKGLSWQPPPYTPTPRFRLTFFICSVGFTSPMLFDERKYPYHLMLQKFLCSGGHNALFETFNWALSMGGKVPVSEGLEHSDLPDGTGEFLDAWLMLVEKMVNPTTVLESPHSLPAKLPGGVQSFPQFSALRFLVVTQKAAFTCIKNLWNRKPLKVYGGRMAESMLAILCHILRGEPVIRERLSKEKEGSRGEEEAGQEEGGSRREPQVNQQQLQQLMDMGFTREHAMEALLNTSTMEQATEYLLTHPPPIIGGVVRDLSMSEEDQMMRAIAMSLGQDIPMDQRAESPEEVACRKEEEERKAREKQEEEEAKCLEKFQDADPLEQDELHTFTDTMLPGCFHLLDELPDTVYRVCDLIMTAIKRNGADYRDMILKQVVNQVWEAADVLIKAALPLTTSDTKTVSEWISQMATLPQASNLATRILLLTLLFEELKLPCAWVVESSGILNVLIKLLEVVQPCLQAAKEQKEVQTPKWITPVLLLIDFYEKTAISSKRRAQMTKYLQSNSNNWRWFDDRSGRWCSYSASNNSTIDSAWKSGETSVRFTAGRRRYTVQFTTMVQVNEETGNRRPVMLTLLRVPRLSKNSKSSNGQELEKTLEESKETDIKHKENKGNDIPLALESTNTEKEASLDETKIGEILIQGLTEDMVTVLIRACVSMLGVPVDPDTLHATLRLCLRLTRDHKYAMMFAELKSTRMILNLTQSSGFNGFTPLVTLLLRHIIEDPCTLRHTMEKVVRSAATSGAGSTTSGVVSGSLGSREINYILRVLGPAACRNPDIFTEVANCCIRIALPAPRGSGTASDDEFENLRIKGPNAVQLVKTTPLKPSSLPVIPDTIKEVIYDMLNALAAYHAPEEADKSDPKPGGTTQEVGQLLQDMGDDVYQQYRSLTRQSSDFDTQSGFSLNSQVFAADGAPAETSTTGTSQGEASTPEETREGKKDKEGDRTSEEGKQKSKGSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPHTQNAEDKDTPALARLFLASLAAAGSGTDAQVALVNEVKAALGRALAMAESTEKHARLQAVMCIISTIMESCPSTSSFYSSATAKTQHNGMNNIIRLFLKKGLVNDLARVPHSLDLSSPNMANTVNAALKPLETLSRIVNQPSSLFGSKSASSKNKSEQDAQGASQDSSSHQQDPGEPGEAEVQEEDHDVTQTEVADGDIMDGEAETDSVVIAGQPEVLSSQEMQVENELEDLIDELLERDGGSGNSTIIVSRSGEDESQEDVLMDEAPSNLSQASTLQANREDSMNILDPEDEEEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGSEMELDEDYPDMNASPLVRFERFDREDDLIIEFDNMFSSATDIPPSPGNIPTTHPLMVRHADHSSLTLGSGSSTTRLTQGIGRSQRTLRQLTANTGHTIHVHYPGNRQPNPPLILQRLLGPSAAADILQLSSSLPLQSRGRARLLVGNDDVHIIARSDDELLDDFFHDQSTATSQAGTLSSIPTALTRWTEECKVLDAESMHDCVSVVKVPIVNHLEFLRDEELEERREKRRKQLAEEETKIIDKGKEDKENRDQSAQCTVTKTNDSTEQNVSDGTPMPDSYPTTPSSTDAPTSESKETLGTLQPSQQQPALPPPPSLGEIPQELQSPAEEVANSTQLLMPIELEELGPTRPSGEAETTQMELSPAPTITSLSPERAEDSDALTAVSSQLEGSPMDTSSLASCTLEEAVGDTPAAGSSEQPTAGSSTPGDAPSVVAEVQGRPDVSRESNQPPEDSSPPASSESSSTRDSAVAISGADSRGILEEPLPSTSSEEEDPLAGISLPEGVDPSFLAALPDDIRREVLQNQLGIRPPTRSAPSSNSSAPAVVGNPGVTEVSPEFLAALPPAIQEEVLAQQRAEQQRRELAQNASSDTPMDPVTFIQTLPSDLRRSVLEDMEDSVLAVMPPDIAAEAQALRREQEARQRQLMHERLFGHSSTSALSAILRSPAFTSRLSGNRGVQYTRLAVQRGGTFQMGGSSSHNRPSGSNVDTLLRLRGRLLLDHEALSCLLVLLFVDEPKLNTSRLHRVLRNLCYHAQTRHWVIRSLLSILQRSSESELCIETPKLSTSEERGKKSSKSCASSSHENRPLDLLHKMESKSSNQLSWLSVSMDAALGCRTNIFQIQRSGGRKHTEKHASSGSTVHIHPQAAPVVCRHVLDTLIQLAKVFPSHFTQQRTKETNCESDRERGSKQACSPCSSQSSSSGICTDFWDLLVKLDNMNVSRKGKNSVKSVPVSSGGEGETSPHSLEASPLGQLMNMLSHPVIRRSSLLTEKLLRLLSLISIALPENKVSEVQTNSSNSGSSTAATSNTSTTTTTTTTATAPTPTPPAATTPVTSAPALVAATAISTITVAASTTVTTPTTATTTVSTSTTKGSKSPAKVGEGGSGIDFKMVSSGLTENQLQLSVEVLTSHSCSEEGLEDAANVLLQLSRGDSGTRDTVLKLLLNGARHLGYTLCKQIGTLLAELREYNLEQQRRAQCETLSPDGLPEEQPQTTKLKGKMQSRFDMAENVVIVASQKRPLGGRELQLPSMSMLTSKTSTQKFFLRVLQVIIQLRDDTRRANKKAKQTGRLGSSGLGSASSIQAAVRQLEAEADAIIQMVREGQRARRQQQAATSESSNQSETSVRREESPMDVDQPSPSAQDTQSIVISDGTPQGEKEKEEKPPELPLLSEQLSLDELWDMLGECLKELEESHDQHAVLVLQPAVEAFFLVHATERESKPPVRDTRESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSREPSSMHISSSLPPDTQKFLRFAETHRTVLNQILRQSTTHLADGPFAVLVDYIRVLDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA", "sequence_length": 4377, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c92edb7441548d2fbaf39a24981f8c2886cf6284f15431cd72592aa9fb949385", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/Q7TMY8.json", "taxon_id": "10090", "uniprot_accession": "Q7TMY8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf908-pf06012.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf908-pf06012.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf913-pf06025.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf913-pf06025.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/ubm-pf14377.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF14377", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/ubm-pf14377.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q7Z6Z7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00632", "PF02825", "PF06012", "PF06025", "PF14377", "PF22562" ], "protein_name": "E3 ubiquitin-protein ligase HUWE1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "746b5a381bbaded30e5fe4ffc0898c70edad0766057c975d3845f9656cff3e60", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKVDRTKLKKTPTEAPADCRALIDKLKVCNDEQLLLELQQIKTWNIGKCELYHWVDLLDRFDGILADAGQTVENMSWMLVCDRPEREQLKMLLLAVLNFTALLIEYSFSRHLYSSIEHLTTLLASSDMQVVLAVLNLLYVFSKRSNYITRLGSDKRTPLLTRLQHLAESWGGKENGFGLAECCRDLHMMKYPPSATTLHFEFYADPGAEVKIEKRTTSNTLHYIHIEQLDKISESPSEIMESLTKMYSIPKDKQMLLFTHIRLAHGFSNHRKRLQAVQARLHAISILVYSNALQESANSILYNGLIEELVDVLQITDKQLMEIKAASLRTLTSIVHLERTPKLSSIIDCTGTASYHGFLPVLVRNCIQAMIDPSMDPYPHQFATALFSFLYHLASYDAGGEALVSCGMMEALLKVIKFLGDEQDQITFVTRAVRVVDLITNLDMAAFQSHSGLSIFIYRLEHEVDLCRKECPFVIKPKIQRPNTTQEGEEMETDMDGVQCIPQRAALLKSMLNFLKKAIQDPAFSDGIRHVMDGSLPTSLKHIISNAEYYGPSLFLLATEVVTVFVFQEPSLLSSLQDNGLTDVMLHALLIKDVPATREVLGSLPNVFSALCLNARGLQSFVQCQPFERLFKVLLSPDYLPAMRRRRSSDPLGDTASNLGSAVDELMRHQPTLKTDATTAIIKLLEEICNLGRDPKYICQKPSIQKADGTATAPPPRSNHAAEEASSEDEEEEEVQAMQSFNSTQQNETEPNQQVVGTEERIPIPLMDYILNVMKFVESILSNNTTDDHCQEFVNQKGLLPLVTILGLPNLPIDFPTSAACQAVAGVCKSILTLSHEPKVLQEGLLQLDSILSSLEPLHRPIESPGGSVLLRELACAGNVADATLSAQATPLLHALTAAHAYIMMFVHTCRVGQSEIRSISVNQWGSQLGLSVLSKLSQLYCSLVWESTVLLSLCTPNSLPSGCEFGQADMQKLVPKDEKAGTTQGGKRSDGEQDGAAGSMDASTQGLLEGIGLDGDTLAPMETDEPTASDSKGKSKITPAMAARIKQIKPLLSASSRLGRALAELFGLLVKLCVGSPVRQRRSHHAASTTTAPTPAARSTASALTKLLTKGLSWQPPPYTPTPRFRLTFFICSVGFTSPMLFDERKYPYHLMLQKFLCSGGHNALFETFNWALSMGGKVPVSEGLEHSDLPDGTGEFLDAWLMLVEKMVNPTTVLESPHSLPAKLPGGVQNFPQFSALRFLVVTQKAAFTCIKNLWNRKPLKVYGGRMAESMLAILCHILRGEPVIRERLSKEKEGSRGEEDTGQEEGGSRREPQVNQQQLQQLMDMGFTREHAMEALLNTSTMEQATEYLLTHPPPIMGGVVRDLSMSEEDQMMRAIAMSLGQDIPMDQRAESPEEVACRKEEEERKAREKQEEEEAKCLEKFQDADPLEQDELHTFTDTMLPGCFHLLDELPDTVYRVCDLIMTAIKRNGADYRDMILKQVVNQVWEAADVLIKAALPLTTSDTKTVSEWISQMATLPQASNLATRILLLTLLFEELKLPCAWVVESSGILNVLIKLLEVVQPCLQAAKEQKEVQTPKWITPVLLLIDFYEKTAISSKRRAQMTKYLQSNSNNWRWFDDRSGRWCSYSASNNSTIDSAWKSGETSVRFTAGRRRYTVQFTTMVQVNEETGNRRPVMLTLLRVPRLNKNSKNSNGQELEKTLEESKEMDIKRKENKGNDTPLALESTNTEKETSLEETKIGEILIQGLTEDMVTVLIRACVSMLGVPVDPDTLHATLRLCLRLTRDHKYAMMFAELKSTRMILNLTQSSGFNGFTPLVTLLLRHIIEDPCTLRHTMEKVVRSAATSGAGSTTSGVVSGSLGSREINYILRVLGPAACRNPDIFTEVANCCIRIALPAPRGSGTASDDEFENLRIKGPNAVQLVKTTPLKPSPLPVIPDTIKEVIYDMLNALAAYHAPEEADKSDPKPGVMTQEVGQLLQDMGDDVYQQYRSLTRQSSDFDTQSGFSINSQVFAADGASTETSASGTSQGEASTPEESRDGKKDKEGDRASEEGKQKGKGSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPHTQNAEDKDTPALARLFLASLAAAGSGTDAQVALVNEVKAALGRALAMAESTEKHARLQAVMCIISTIMESCPSTSSFYSSATAKTQHNGMNNIIRLFLKKGLVNDLARVPHSLDLSSPNMANTVNAALKPLETLSRIVNQPSSLFGSKSASSKNKSEQDAQGASQDSSSNQQDPGEPGEAEVQEEDHDVTQTEVADGDIMDGEAETDSVVIAGQPEVLSSQEMQVENELEDLIDELLERDGGSGNSTIIVSRSGEDESQEDVLMDEAPSNLSQASTLQANREDSMNILDPEDEEEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGSEMELDEDYPDMNASPLVRFERFDREDDLIIEFDNMFSSATDIPPSPGNIPTTHPLMVRHADHSSLTLGSGSSTTRLTQGIGRSQRTLRQLTANTGHTIHVHYPGNRQPNPPLILQRLLGPSAAADILQLSSSLPLQSRGRARLLVGNDDVHIIARSDDELLDDFFHDQSTATSQAGTLSSIPTALTRWTEECKVLDAESMHDCVSVVKVSIVNHLEFLRDEELEERREKRRKQLAEEETKITDKGKEDKENRDQSAQCTASKSNDSTEQNLSDGTPMPDSYPTTPSSTDAATSESKETLGTLQSSQQQPTLPTPPALGEVPQELQSPAGEGGSSTQLLMPVEPEELGPTRPSGEAETTQMELSPAPTITSLSPERAEDSDALTAVSSQLEGSPMDTSSLASCTLEEAVGDTSAAGSSEQPRAGSSTPGDAPPAVAEVQGRSDGSGESAQPPEDSSPPASSESSSTRDSAVAISGADSRGILEEPLPSTSSEEEDPLAGISLPEGVDPSFLAALPDDIRREVLQNQLGIRPPTRTAPSTNSSAPAVVGNPGVTEVSPEFLAALPPAIQEEVLAQQRAEQQRRELAQNASSDTPMDPVTFIQTLPSDLRRSVLEDMEDSVLAVMPPDIAAEAQALRREQEARQRQLMHERLFGHSSTSALSAILRSPAFTSRLSGNRGVQYTRLAVQRGGTFQMGGSSSHNRPSGSNVDTLLRLRGRLLLDHEALSCLLVLLFVDEPKLNTSRLHRVLRNLCYHAQTRHWVIRSLLSILQRSSESELCIETPKLTTSEEKGKKSSKSCGSSSHENRPLDLLHKMESKSSNQLSWLSVSMDAALGCRTNIFQIQRSGGRKHTEKHASGGSTVHIHPQAAPVVCRHVLDTLIQLAKVFPSHFTQQRTKETNCESDRERGNKACSPCSSQSSSSGICTDFWDLLVKLDNMNVSRKGKNSVKSVPVSAGGEGETSPYSLEASPLGQLMNMLSHPVIRRSSLLTEKLLRLLSLISIALPENKVSEAQANSGSGASSTTTATSTTSTTTTTAASTTPTPPTAPTPVTSAPALVAATAISTIVVAASTTVTTPTTATTTVSISPTTKGSKSPAKVSDGGSSSTDFKMVSSGLTENQLQLSVEVLTSHSCSEEGLEDAANVLLQLSRGDSGTRDTVLKLLLNGARHLGYTLCKQIGTLLAELREYNLEQQRRAQCETLSPDGLPEEQPQTTKLKGKMQSRFDMAENVVIVASQKRPLGGRELQLPSMSMLTSKTSTQKFFLRVLQVIIQLRDDTRRANKKAKQTGRLGSSGLGSASSIQAAVRQLEAEADAIIQMVREGQRARRQQQAATSESSQSEASVRREESPMDVDQPSPSAQDTQSIASDGTPQGEKEKEERPPELPLLSEQLSLDELWDMLGECLKELEESHDQHAVLVLQPAVEAFFLVHATERESKPPVRDTRESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSREPSSMHISSSLPPDTQKFLRFAETHRTVLNQILRQSTTHLADGPFAVLVDYIRVLDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA", "sequence_length": 4374, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "746b5a381bbaded30e5fe4ffc0898c70edad0766057c975d3845f9656cff3e60", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Z6Z7.json", "taxon_id": "9606", "uniprot_accession": "Q7Z6Z7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ims-c-pf11799.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11799", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ims-c-pf11799.yaml" }, { "cited_uniprot_accession": "", "commit": 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"commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/ubm-pf14377.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14377", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/ubm-pf14377.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9UBZ9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], 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"MRRGGWRKRAENDGWETWGGYMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELKGEKVIRPEWIVESIKAGRLLSYIPYQLYTKQSSVQKGLSFNPVCRPEDPLPGPSNIAKQLNNRVNHIVKKIETENEVKVNGMNSWNEEDENNDFSFVDLEQTSPGRKQNGIPHPRGSTAIFNGHTPSSNGALKTQDCLVPMVNSVASRLSPAFSQEEDKAEKSSTDFRDCTLQQLQQSTRNTDALRNPHRTNSFSLSPLHSNTKINGAHHSTVQGPSSTKSTSSVSTFSKAAPSVPSKPSDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTDTGDMSVLNSPRHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILKGKAADIPDSSLWENPDSAQANGIDSVLSRAEIASCSYEARQLGIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRGVGIHVNQLVPTNLNPSTCPSRPSVQSSHFPSGSYSVRDVFQVQKAKKSTEEEHKEVFRAAVDLEISSASRTCTFLPPFPAHLPTSPDTNKAESSGKWNGLHTPVSVQSRLNLSIEVPSPSQLDQSVLEALPPDLREQVEQVCAVQQAESHGDKKKEPVNGCNTGILPQPVGTVLLQIPEPQESNSDAGINLIALPAFSQVDPEVFAALPAELQRELKAAYDQRQRQGENSTHQQSASASVPKNPLLHLKAAVKEKKRNKKKKTIGSPKRIQSPLNNKLLNSPAKTLPGACGSPQKLIDGFLKHEGPPAEKPLEELSASTSGVPGLSSLQSDPAGCVRPPAPNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQTYGSTLKVT", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ims-hhh-1-pf21999.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21999", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ims-hhh-1-pf21999.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ims-pf00817.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00817", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ims-pf00817.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/ubm-pf14377.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14377", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/ubm-pf14377.yaml" } ], "pfam_ids": [ "PF00817", "PF11799", "PF14377", "PF21999" ], "protein_name": "DNA polymerase iota", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"uniprot_accession": "Q9UNA4", "uniprot_release": "2026_03" } ], "pfam_id": "PF14377", "short_name": "UBM", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14383", "short_name": "VARLMGL", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14384", "short_name": "BrnA_antitoxin", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14385", "short_name": "DUF4416", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium phage D29", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4417-pf14386.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14386", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4417-pf14386.yaml" } ], "pfam_ids": [ "PF14386" ], "protein_name": "Gene 1 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYGTRSSAYWSTQPGKFDVLNLRMTFPSSSAYEIPDLRPTTYVPANLAAWNMPRHREYAAVSGGALHFFLDDYRFETVWSSPERLLPRVQAVGAALTPDFSLWRDMPRAAAVWNVYRSRWCGAYWQSQGIEVLPTACWATPDTFDFCFDGIPEGATVAISSMGIRSSKVDQALFRAGLQELLDRKQPRLLLAYGRLRYCDDMNLPEVKEYPTYWDRRRKQVSDAWAEEDPPVAAVPLEPEDATAPGKEPGQAAWVDLEAAVEPPEAAGAV", "sequence_length": 270, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b74392ccc6915ea2e4df7955283f0768939882d35b43a3fe1ed5ab0ff37d8dd4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O64197.json", "taxon_id": "28369", "uniprot_accession": "O64197", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium phage L5", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4417-pf14386.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14386", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4417-pf14386.yaml" } ], "pfam_ids": [ "PF14386" ], "protein_name": "Gene 1 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHGTRSSAHWSTQPGKFDVLNLRMTFESSSAYEIPDLRPTDFVPAYLAAWNMPRHRDYAAKNGGALHFFLDDYRFETAWSSPERLLDRVKQVGAALTPDFSLWTNMPKAAQLWNVYRSRWCGAYWQSEGIEVIPTACWATPDTFDFCFDGIPMGSTVAISSMGIRSSKVDQELFRYGLRELIDRTQPQLLLAYGQLRHCDDMDLPEVREYPTYWDRRRKWVTADGRPGK", "sequence_length": 229, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4968e7593b291063d51734938db1e15d487fe15c7bf51f0afbf9f3acc3881ff1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q05218.json", "taxon_id": "31757", "uniprot_accession": "Q05218", "uniprot_release": "2026_03" } ], "pfam_id": "PF14386", "short_name": "DUF4417", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14387", "short_name": "DUF4418", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4419-pf14388.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14388", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4419-pf14388.yaml" } ], "pfam_ids": [ "PF14388" ], "protein_name": "Uncharacterized protein L662", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQIILDDKLEKLNVNPVFVDLKNQQDKSIIVQNYENHQTIKRTVPNALIDMIKFAWANHLPVSLRPDDFWIQILTQFATHVNLNSELYQKYFSNKDNPDSETQISIGYTDFDNVQDVPIDDFVQKILSKLNECIERNDLITKLQCDFTTSNSITLLTSQIAFMYMADKFFSYKMILGCGIPSIKLDGTIDDWTNLKSKIRTLLEIADDKIKSWLSNLEIITNKIITSIKYPGVFVNFWKKMFYVERCGSGSQTCSKGWICHLFLYDKSYCKLGHVFDSENELYDLKGITFWDDFPNCEVKCPFMVNSESRPHYLNAGIYGFTMIDDHLRLISGFTVSKLDYDEWSFDDKPIHILKINFSQETYSRIKYNGKLIHEWYQITGVTNEDRLEYDCDNTIIYYNTESSSIDFIYRGENKYGPVCSYQKVKFTDGGVKVTSKGSASLEYFIKNSIKIYEERDSTHN", "sequence_length": 462, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5b953db34634479822f9c727e2898ae70f6041094351a8529521a769ab8fcb8d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQ60.json", "taxon_id": "212035", "uniprot_accession": "Q5UQ60", "uniprot_release": "2026_03" } ], "pfam_id": "PF14388", "short_name": "DUF4419", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14390", "short_name": "DUF4420", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14391", "short_name": "DUF4421", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14393", "short_name": "DUF4422", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14394", "short_name": "DUF4423", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14415", "short_name": "DUF4424", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14466", "short_name": "PLCC", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14467", "short_name": "DUF4426", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14468", "short_name": "DUF4427", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14471", "short_name": "DUF4428", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14472", "short_name": "DUF4429", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sus scrofa", "origins": [ { "cited_uniprot_accession": "", "commit": 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"MRQSHQLPLVGLLLFSLIPSQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLSQRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGACKTPDVRFIHDHHLVEKLGEKFKEEIKNMEIHNSNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSEKMVVSLETRIAQEKLCRLSLSHQTITKMNQIAKKLWTRCLTHSQGVFRLPIAAAQILPALLGKTYLDVTKLLLVPKVQVNITDEPVPVVPTLSPENISVIYCVKINEISNCINITVFLDVMKAAQEKNSTIYGFTMTETPWGPYITSVQGIWANNNERTYWEHSEQQQITKPRSMGIMLSKMESI", "sequence_length": 417, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cdd380e11cde2eebff7d5c8b8370424a36fe625a7c8d06ee6a51604bd143d2bd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P17630.json", "taxon_id": "9823", "uniprot_accession": "P17630", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": 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"uniprot_accession": "P36081", "uniprot_release": "2026_03" } ], "pfam_id": "PF14610", "short_name": "Psg1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cryptococcus neoformans (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ham1-c-pf14613.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14613", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ham1-c-pf14613.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ham1-n-pf19343.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19343", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ham1-n-pf19343.yaml" } ], "pfam_ids": [ "PF14613", "PF19343" ], "protein_name": "Putative cell signaling protein HAM1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVAATKSEISHNPGKMSVTSAVSGEKVEGDVQSRMKLFGAIQAFRDGRMPDNEQIGSVLEYAIGHSPVDLQKLSPEGRVLIEDFRDTLETLRMIVHEKNSDELFQNAVWSSYHGDVSKAKQDGVIPVSNEQAKQDGKTAASHIRVLITLFLTNSEARKLLKDFGIVGRDIFATAATKAADKSRPSQEKLDSVDQEAPSHEWIGADGKRLGPNETPDIQIKGPGGTQARYHPRDDPRDAQLVDDKGKTRSAGEAYNQAQEAKSDAQSKAQDLKSSARDYKETGKQQARSHAQDVAGNRDPNASLSEQKEQVKGAAYDKRDAANAQADQNLPDPNDEGNQEKARGKAAALRDRIPEEHRQKAADYIQKSKNFVNDELPEERRDQFIYRLKKVVVECQGHKDYQEAMTWLLDTLENYRGHAKHVANKGTESAQTVANDPAVGDSTIQFRTLLERFANGKSLDNVFSALDQIYTDVQNDSELREWFTTFNDYMHRVLLEPGYILDEDSDREARQLRESGRRFFQDKYKAHQELLFDELQVWLTAFGEDPLNVRLGDDIKRFCKDLLFNHEGNLTFKPKLWNDVRQVLLPMLLKQVSYVPIPRAEYSDNSIDLVIEDLILSGPNLFPNLVHIESFNSFSFSPYPKLNKTMDNQHHKFRLSLSQIQADIRDVAFAFRRKSGWPKLSDHGLADVVLAGKGISVDVELESIENRRDTVFKTNFIHVNIDTLKFSIRNSKHDLLYKFIKSTATGLIKRAITAAVQNAMHTALGHLDEQLVEVRNRVDEAKQSDETTRTQALKDLYSRKKESAQEKKAAADEKTGTFKIITDRDSQLNPELTHDGGKSWAKRAFKVEDAARTGKEWRSPAFNLIDPAHPAVTGQHHPAVQNADVESEKLKQRAEAAAPGVAAGTKRM", "sequence_length": 908, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95369f3bddb983991db3124fde2e43e520f1dbce8c8f8bea3aea2b1afa6df494", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/J9VVE7.json", "taxon_id": "235443", "uniprot_accession": "J9VVE7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ham1-c-pf14613.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14613", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ham1-c-pf14613.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ham1-n-pf19343.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19343", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ham1-n-pf19343.yaml" } ], "pfam_ids": [ "PF14613", "PF19343" ], "protein_name": "Putative cell signaling protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVAYPTDKHVVHEETGKGLEVYSIWTAISNGKMPSNKQLRGLGSSLTDGAKSVAKERQKKISDPARKFFSDFSKLIDNSFNVFAKKNEGDLLQNAIYELSQAEGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLRTLLQNAIVLLGQQTTNVASKKLNEQDGKKSDNLRNGVNKVKQNMRNGASARDQAREQGSKAKDKIKNDPDAQKAKEETKQKLQDLYEEFKSVAVDLQGDPKYQHPVRSLLNLIDKFIDKLSEQSGNVTADTNEHYDRAMQYLKQLVENILNRSLDNLIDTLKQVQHDAENDEELKDWLESTRQFVRKVLLKKGYAKSDASDKEFNKLRDKGDELLNGRYKKRWQQLSSEVKKISDSASSDKDVKQLFSNYKNIYGDLIKREGGQISLKTSMCLEILRLGVPVILEKMQYFPIPRLEIEQPDFDVVLENLNLQTANVLPKLAEFRNNNFVRFSPYANITSFRENMINVHLSNIQCDLKDVNYYIKRKQGFPTFTDLGVVDLLIGKQGMVVNLTLSSFSNTMFENELPDSFFKVEDVKVDIHHIKLKIRKSRHRLLLAFLKPSLMTYVRSTVARSMELSIRHAFEQVDREWYEIHKEAKSEIEKDSSKPTEDQESKLKVYGRVAYSRISNLHKSSKEKGKDSQVRVALHKENTALNNIVLPSGNLQRSEEKRRAALSGSTWHSPAFNIFGVDDSEDSDSPWATDRGSRLYQRTKGSVKSRESRLKKEKHKNRPASKGTYTTYTSSEERQRSTEDPLSHDTLSRTILNDQIVKGNVTEIPLPPLAVNEKRASVAVSSIPSFGDDQHDIELLNSTDPRKNRILYNQPPAVA", "sequence_length": 851, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f4491f70852adcb288ce75005b3b11728beba5add7444f542d49f5524cabebf7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q10327.json", "taxon_id": "284812", "uniprot_accession": "Q10327", "uniprot_release": "2026_03" } ], "pfam_id": "PF14613", "short_name": "HAM1_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14614", "short_name": "DUF4450", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transcription-regulator-rua1-c-terminal-ipr028012.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transcription-regulator-rua1-c-terminal-ipr028012.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rua1-c-pf14616.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14616", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rua1-c-pf14616.yaml" } ], "pfam_ids": [ "PF14616" ], "protein_name": "Protein ECM8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDYGYFFPAQRIEETNGVDFWIDSNAEFTQSKRPDSSTSTLSRVLTDTTNVSNNSGSLKRKTIKNKIFPQRKIFNDSENFDFGKANTDCKHVFKSISKQLIFLPRCFQHHSIRGWMKDRYSEFGYKIKRNQNCPPSACVQALYNTSRSNTEESNPNSLDSLIMYKYMRYSEKKKELMCRFCQGNNWILAENYLKHLFFAHGILSEFKPHTLYHFESKLLKIQGKLNFKIQVLKEPEFSKKILNSLTVSIIPSPLAYYTQTLNGGFRRIHVKCPHCENWIRLGWCEYDEIIRDSFQDFESLRNLNADYNGMSYIQTRNREDIEGIYENYFTHYIQCDLATFRTKCLYVQVITKSN", "sequence_length": 354, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "070ac35b0a06c93f6e3ef11c66eac7dda060a003e8a378808633019f7a1f0f4f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P38246.json", "taxon_id": "559292", "uniprot_accession": "P38246", "uniprot_release": "2026_03" } ], "pfam_id": "PF14616", "short_name": "Rua1_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4452-pf14618.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14618", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4452-pf14618.yaml" } ], "pfam_ids": [ "PF14618" ], "protein_name": "Uncharacterized protein C22H10.02", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFYYKNNLGYQNIPYGYQLNDFRASFEKARTFDMEDDLEFCPSLSDEELVSIYQSTGLSPTSSSPSLSPMTPNLYPNVLPNVHPGVSNYTHHPLSGLHQNVGSRTRKSSGIPIIDPVTRAPAVLAGAVSSSRAKQMW", "sequence_length": 138, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a45584e164b04391b1feaa832a4c6a365be59bad55664ee884d65ef002be9199", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q10296.json", "taxon_id": "284812", "uniprot_accession": "Q10296", "uniprot_release": "2026_03" } ], "pfam_id": "PF14618", "short_name": "DUF4452", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14627", "short_name": "DUF4453", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14628", "short_name": "DUF4454", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4455-ipr028089.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028089", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4455-ipr028089.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4456-ipr027914.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027914", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4456-ipr027914.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4455-pf14643.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14643", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4455-pf14643.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4456-pf14644.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14644", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4456-pf14644.yaml" } ], "pfam_ids": [ "PF14643", "PF14644" ], "protein_name": "Coiled-coil domain-containing protein 180", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRGGENRPPARVQSSSEELELRHQSLDAFPGRRLPGRGIQPAAKMSSVGKVTQVPNGKAYQQIFQAEVQLVHSLAATRKRAAERSVTLKSGRIPMMKKVETPEGEVMSPRQQKWMHSLPNDWIMENPVLHREKERAKREKARESENTIAAREVRGLMDTIVPEKISTSTFQRQAEHKRKSYESALASFQEEIAQVGKEMEPLIVDTGGLFLKKLTESDEEMNRLFLKVENDTNLEDYTIQALLELWDKVAGRLLLRKQEIKELDEALHSLEFSRTDKLKSVLKKYAEVIEKTSYLMRPEVYRLINEEAMVMNYALLGNRKALAQLFVNLMESTLQQELDSRHRWQGLVDTWKALKKEALLQSFSEFMASESIHTPPAVTKELEVMLKTQNVLQQRRLKHLCTICDLLPPSYSKTQLTEWHSSLNSLNKELDTYHVDCMMRIRLLYEKTWQECLMHVQNCKKQLLDWKAFTEEEAETLVNQFFFQMVGALQGKVEEDLELLDKSFETLADQTEWQSSHLFKYFQEVVQLWEAHQSELLVQELELEKRMEQHRQKHSLESQVQEAHLDRLLDQLRQQSDKETLAFHLEKVKDYLKNMKSRYECFHTLLTKEVMEYPAIMLKELNSYSSALSQYFFVREIFEQNLAGEVIFKFRQPEAHEKPSQKRVKKLRKKQGSKEDMTRSEESISSGTSTARSVEEVEEENDQEMESFITEEVLGQQKKSPLHAKMDESKEGSIQGLEEMQVEREGSLNPSLNEENVKGQGEKKEESEEEDEKEEEEEEEKLEEEKEEKEAQEEQESLSVGEEEDKEEGLEEIYYEDMESFTISSGNTYFVFVPLEEEHCRKSHSTFSAMFINDTSSAKFIEQVTIPSRLILEIKKQLRAGFFEHLEKWFDQCSLNTRVTVATKINELDSELELHLHLHQPRAQQIEKDIHNVRAAELLLHQEQLDSHCAGVTETLKKKRLMFCQFQEEQNVRSKNFRLKIYDMEHIFLNATRSQKLVTLSNTLHQELLSYVDVTQVSLRSFRQYLEESLGKLRYSNIEFIKHCRLFSEGGNFSPKEINSLCSRLEKEAARIELVESVIMLNMEKLENEYLDQANDVINKFESKFHNLSVDLIFIEKIQRLLTNLQVKIKCQVAKSNSQTNGLNFSLQQLQNKIKTCQESRGEKTTVTTEELLSFVQTWKEKLSQRIQYLNCSLDRVSMTELVFTNTILKDQEEDSDILTSSEALEEEAKLDVVTPESFTQLSRVGKPLIEDPAVDVIRKLLQLPNTKWPTHHCDKDPSQTGRGAWACGSRGSSEAGAGGAVCSPPVLCSCPGPSSPKGFKRHRCQPENSGKKAVPSASATSAGSFTPHPKPNKMERKYRVLGDKPPPAAEDFKGIILTLLWESSENLLTVAEEFYRKEKRPVTRPDCMCDTFDQCAENISKKILEYQSQANKYHNSCLIELRIQIRRFEELLPQVCWLVMENFKEHHWKKFFTSVKEIRGQFEEQQKRLEKRKDKNAQKLHLNLGHPVHFQEMESLHLSEEERQEELDSMIRMNKEKLEECTRRNGQVFITNLATFTEKFLLQLDEVVTIDDVQVARMEPPKQKLSMLIRRKLAGLSLKEESEKPLIERGSRKWPGIKPTEVTIQNKILLQPTSSISTTKTTLGHLAAVEARDAVYLKYLASFEEELKRIQDDCTSQIKEAQRWKDSWKQSLHTIQGLYV", "sequence_length": 1701, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b7ccc1594097b8b52ef42371746d211e481f0eb69304affaaa6c968e8847e47", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9P1Z9.json", "taxon_id": "9606", "uniprot_accession": "Q9P1Z9", "uniprot_release": "2026_03" } ], "pfam_id": "PF14643", "short_name": "DUF4455", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4455-ipr028089.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028089", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4455-ipr028089.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4456-ipr027914.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027914", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4456-ipr027914.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4455-pf14643.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14643", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4455-pf14643.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4456-pf14644.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14644", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4456-pf14644.yaml" } ], "pfam_ids": [ "PF14643", "PF14644" ], "protein_name": "Coiled-coil domain-containing protein 180", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRGGENRPPARVQSSSEELELRHQSLDAFPGRRLPGRGIQPAAKMSSVGKVTQVPNGKAYQQIFQAEVQLVHSLAATRKRAAERSVTLKSGRIPMMKKVETPEGEVMSPRQQKWMHSLPNDWIMENPVLHREKERAKREKARESENTIAAREVRGLMDTIVPEKISTSTFQRQAEHKRKSYESALASFQEEIAQVGKEMEPLIVDTGGLFLKKLTESDEEMNRLFLKVENDTNLEDYTIQALLELWDKVAGRLLLRKQEIKELDEALHSLEFSRTDKLKSVLKKYAEVIEKTSYLMRPEVYRLINEEAMVMNYALLGNRKALAQLFVNLMESTLQQELDSRHRWQGLVDTWKALKKEALLQSFSEFMASESIHTPPAVTKELEVMLKTQNVLQQRRLKHLCTICDLLPPSYSKTQLTEWHSSLNSLNKELDTYHVDCMMRIRLLYEKTWQECLMHVQNCKKQLLDWKAFTEEEAETLVNQFFFQMVGALQGKVEEDLELLDKSFETLADQTEWQSSHLFKYFQEVVQLWEAHQSELLVQELELEKRMEQHRQKHSLESQVQEAHLDRLLDQLRQQSDKETLAFHLEKVKDYLKNMKSRYECFHTLLTKEVMEYPAIMLKELNSYSSALSQYFFVREIFEQNLAGEVIFKFRQPEAHEKPSQKRVKKLRKKQGSKEDMTRSEESISSGTSTARSVEEVEEENDQEMESFITEEVLGQQKKSPLHAKMDESKEGSIQGLEEMQVEREGSLNPSLNEENVKGQGEKKEESEEEDEKEEEEEEEKLEEEKEEKEAQEEQESLSVGEEEDKEEGLEEIYYEDMESFTISSGNTYFVFVPLEEEHCRKSHSTFSAMFINDTSSAKFIEQVTIPSRLILEIKKQLRAGFFEHLEKWFDQCSLNTRVTVATKINELDSELELHLHLHQPRAQQIEKDIHNVRAAELLLHQEQLDSHCAGVTETLKKKRLMFCQFQEEQNVRSKNFRLKIYDMEHIFLNATRSQKLVTLSNTLHQELLSYVDVTQVSLRSFRQYLEESLGKLRYSNIEFIKHCRLFSEGGNFSPKEINSLCSRLEKEAARIELVESVIMLNMEKLENEYLDQANDVINKFESKFHNLSVDLIFIEKIQRLLTNLQVKIKCQVAKSNSQTNGLNFSLQQLQNKIKTCQESRGEKTTVTTEELLSFVQTWKEKLSQRIQYLNCSLDRVSMTELVFTNTILKDQEEDSDILTSSEALEEEAKLDVVTPESFTQLSRVGKPLIEDPAVDVIRKLLQLPNTKWPTHHCDKDPSQTGRGAWACGSRGSSEAGAGGAVCSPPVLCSCPGPSSPKGFKRHRCQPENSGKKAVPSASATSAGSFTPHPKPNKMERKYRVLGDKPPPAAEDFKGIILTLLWESSENLLTVAEEFYRKEKRPVTRPDCMCDTFDQCAENISKKILEYQSQANKYHNSCLIELRIQIRRFEELLPQVCWLVMENFKEHHWKKFFTSVKEIRGQFEEQQKRLEKRKDKNAQKLHLNLGHPVHFQEMESLHLSEEERQEELDSMIRMNKEKLEECTRRNGQVFITNLATFTEKFLLQLDEVVTIDDVQVARMEPPKQKLSMLIRRKLAGLSLKEESEKPLIERGSRKWPGIKPTEVTIQNKILLQPTSSISTTKTTLGHLAAVEARDAVYLKYLASFEEELKRIQDDCTSQIKEAQRWKDSWKQSLHTIQGLYV", "sequence_length": 1701, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b7ccc1594097b8b52ef42371746d211e481f0eb69304affaaa6c968e8847e47", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9P1Z9.json", "taxon_id": "9606", "uniprot_accession": "Q9P1Z9", "uniprot_release": "2026_03" } ], "pfam_id": "PF14644", "short_name": "DUF4456", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/katnip-domain-ipr027859.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027859", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/katnip-domain-ipr027859.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4457-pf14652.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14652", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4457-pf14652.yaml" } ], "pfam_ids": [ "PF14652" ], "protein_name": "Protein KATNIP homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDSDLKEIEKNAENIKLEPAEDEVNEEDQNEITIPELPEGRVLELRLLSNWGDSHYIGLNSVEIFTSTGERAVIDKVTTNVTEYTGSLESLIVQRVHCKDAEKMWCAKTTEEKIVLTLELKETCKLALIRFWNYNASRVHAQIGVRYLEMYLDGVGIFRGELECAFSADSEFTPVMGETVLFTTSDNILELIALHDVCLISLPEEPISNSSIEMLKADHLTPYRPSTCEAKDAPSTPVTIVPPPIFRQTGTAYKHDVKTLHIELLSNWGMDGLIGLTGLELVDEHSQLIDESQYTVTTSDGNSDLSKKLFNGRNLTRDPHDMWLVDFDSKNFTTISITFHDNVALKAISVWNYNASFELSYAGVKAAKIYINGKLIKNVLLRKATGFVYFDYVQDVVLDPNNTERDFVPKGISQSIGGFVFQIRLLSTWGDEFYIGLNGIELYNRKGELMKIREHNLAAFPESVNILPNIKNDLRTSNNLITQPNDTDIARNMWLTALLPNRCARVFFVFDVQTYISKIVIYNYRKTPERGVRHISVTVDDLIIFSGEIPSSTATLTGNLEINLMDI", "sequence_length": 568, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8f241994e2175e858387d92fe394ee11b98d5146c2cd7570da63b9c555ee7f6c", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O44770.json", "taxon_id": "6239", "uniprot_accession": "O44770", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-motile-cilium-assembly-go1905504.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-motile-cilium-assembly-go1905504.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/katnip-domain-ipr027859.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027859", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/katnip-domain-ipr027859.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4457-pf14652.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14652", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4457-pf14652.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O60303", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF14652" ], "protein_name": "Katanin-interacting protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f84754c1fd2f1dca361852458fb31b9b975fc7fe53e2d71397e95a84461dca06", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDGQTLRKAERSWSCSREKKEGYAKDMVTDFDEKHDEYLILLQQRNRILKHLKSKDPVQLRLEHLEQGFSVYVNGANSELKSSPRKAIHSDFSRSASHTEGTHDYGRRTLFREAEEALRRSSRTAPSKVQRRGWHQKSVQIRTEAGPRLHIEPPVDYSDDFELCGDVTLQANNTSEDRPQELRRSLELSVNLQRKQKDCSSDEYDSIEEDILSEPEPEDPALVGHPRHDRPPSSGDWTQKDVHGEQETEGRSSPGPDTLVVLEFNPASKSHKRERNLSAKRKDNAEVFVPTKPEPNLTPQAPAVFPDQERMCSRPGSRRERPLSATRKTLCEAEYPEEDASAVLQAIQVENAALQRALLSRKAEQPASPLQDAEGPPAKPWTSLLEEKEETLELLPITTATTTQEPAGAAGGARAINQAMDRIGLLGSRQQQKLLKVLQAVESDSAHLGRVVSPTKEQVSDTEDKQRMRADEIKDAIYVTMEILSNWGNSWWVGLTEVEFFDLNDTKLYVSPHDVDIRNTATPGELGRLVNRNLAGKKDSSPWTCPFHPPLQLFFVIRNTRQLGDFHLAKIKVRNYWTADGDLDIGAKNVKLYVNRNLIFNGKLDKGDREAPADHSILVDQKNEKSEQLEEAMNAHSEESKGTHEMAGASGDKELGLGCSPPAETLADAKLSSQGNVSGKRKNSTNCRKDSLSQLEEYLRLSAVPTSMGDMPSAPATSPPVKCPPVHEEPSLIQQLENLMGRKICEPPGKTPSWLQPSPTGKDRKQGGRKPKPLWLSPEKPLAWKGRLPSDDVIGEGPGETEARDKGLRHEPGWGTSRSVNTKERPQRATTKVHSDDSDIFNQPPNRERPASGRRGSRKDAGSSSHGDDQPASREDTWSSRTPSRSRWRSEQEHTLHESWSSLSAFDRSHRGRISNTELPGDILDELLQQKSSRHSDLPPSKKGEQPGLSRGQDGYSGETDAGGDFKIPVLPYGQRLVIDIKSTWGDRHYVGLNGIEIFSSKGEPVQISNIKADPPDINILPAYGKDPRVVTNLIDGVNRTQDDMHVWLAPFTRGRSHSITIDFTHPCHVALIRIWNYNKSRIHSFRGVKDITMLLDTQCIFEGEIAKASGTLAGAPEHFGDTILFTTDDDILEAIFYSDEMFDLDVGSLDSLQDEEAMRRPSTADGEGDERPFTQAGLGADERIPELELPSSSPVPQVTTPEPGIYHGICLQLNFTASWGDLHYLGLTGLEVVGKEGQALPIHLHQISASPRDLNELPEYSDDSRALDKLIDGTNITMEDEHMWLIPFSPGLDHVVTIRLDRAESIAGLRFWNYNKSPEDTYRGAKIVHVSLDGLCVSPPEGFLIRKGPGNCHFDFAQEILFVDYLRAQLLPQPARRLDMRSLECASMDYEAPLMPCGFIFQFQLLTSWGDPYYIGLTGLELYDERGEKIPLSENNIAAFPDSVNSLEGVGGDVRTPDKLIDQVNDTSDGRHMWLAPILPGLVNRVYVIFDLPTTVSMIKLWNYAKTPHRGVKEFGLLVDDLLVYNGILAMVSHLVGGILPTCEPTVPYHTILFTEDRDIRHQEKHTTISNQAEDQDVQMMNENQIITNAKRKQSVVDPALRPKTCISEKETRRRRC", "sequence_length": 1618, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f84754c1fd2f1dca361852458fb31b9b975fc7fe53e2d71397e95a84461dca06", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/O60303.json", "taxon_id": "9606", "uniprot_accession": "O60303", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-motile-cilium-assembly-go1905504.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-motile-cilium-assembly-go1905504.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/katnip-domain-ipr027859.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027859", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/katnip-domain-ipr027859.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4457-pf14652.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14652", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4457-pf14652.yaml" } ], "pfam_ids": [ "PF14652" ], "protein_name": "Katanin-interacting protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDGQALRKVERSRSCSQERKEGYSKDMVTDFDEKHDEYLILLQQRNRILKHLKAKDPVQLRLEHLEQGFSVYVNGANSELKTSPRKAVHTDFSRSASQAEGSQDYGRRTLFREAEEVLRRSSRTAPGKVQRRGWHQKSVQIRTEAGSRLHIEPPLDCSEDFESQEDVIGKHEDATGEHTQELRKGLGLSTSLQTQEDGSSDEYDSIEEDVLSETETEDPVLPVHNRDECPLPSHDAVQKDVPKDQELEGRHPQATDTLVVMEFNPASKGNKMDRILSAKRKENAEVFIPSKPDSVLNPQPPAVFPEQERACSRSGSRRDRPLSATRKAYAAEDREEDASAVLKAIQVENEALQQVFLSHDPELHTSPQQDTKEPPAKSWSSLLKAKEDIPELLPATPVTTDPELCRAAAGAKAVSQAMDGMSPLGSRQQHKLVGVLQTMESDTTHLSQVAIPTEKPVPNSEEKWKARVDEIEDAIYVTMEILSNWGNASWVGLTEVQFFDLNNIKLYVSPHDVDIRNAVLPGELGCLVNRDLVSKKDPPVWTCPFHPPLQLYFIIHNMRQLRDFGLTMIKVRNYWTADGDLDIGAKNVKLYVNKSLIFDGVLEKGGGEAPSDCTIPVDLQRERNESSDKALSTGWKESKGALKMAALSDARELGLSCSQPAESLDMTVSSQGDFLGEKVNSTSGLKNSLSKLQEDVRLLATPASMGDGPSVPSSSSPGKCLPLEEEPSLIQQLESLRGRKIPEPTGKTPHWLQPSLAGMGKKQTVRKPKPLWLSPEKDLEQKSRFPSEDVMGDTPGEVETREKGPRREQGRTSSWNVITEERAPKAFSKACGDDLDIFSQLPNRDRPASGRRALKKEASSSHGDDRPASKEDTQASQTLPWLQWYGEQEHALHASWDSLTAFDRAHRGRISALEPQGDILDEFLKQQRSSRHEEFPAPCREEEPEPSTEMGGDSDFKIPVLPYGQHLVIDIKSTWGDRHYVGLNGIEIFSSSGEPVQISSITADPPDINILPAYGKDPRVVSNLIDGVNRTQDDMHVWLAPFTPGMTHTISIEFTHPCQVALIRIWNYNKSRIHSFRGVKDITMLLDTQCIFEGEIAKASGTLMGAPEHFGDTILFTMDEDILEAIFCLDDTFDMDAESLCGLQPEEALRRPSTADGEGQDERPFTQAGLGAQDQVPGLELQTSPPVSEVTTPEPGIFYGLCLRLNLTASWGDLHYIGLTGLEVVGKDGEALPIQPHQLSASPRDLNDLPEYNDDSRTLDKLIDGMNITTEDEHMWLIPFSPGLDHVVMIHFDRAQSIAGLRLWNYNKSPEDTYRGVKIAHVSLDGLCVSPAEGFLIRKGPGNCHFDFAQEILFGDYLQTRLPPAPTRRLDAKSLERASMDYEAPLMPCGFIFQFQLLSSWGDPYYIGLTGLELYDEHGERIPLSQNNIAAFPDSVNALEGVCGDVRTPDKLIDQVNDTSDGRHMWLAPILPGLVNRVYVIFDLPTTVSMIKLWNYTKTPQRGVKEFGLLVDDLLVYNGILAMVSHLVGGILPTCEPTVPHHTILFAEDTDFCHQEKHAIISKPEEDQDIQMMNENQVITTSRRKPGTADPALRPKTCIREKETSRRWRC", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4472-pf14739.yaml" } ], "pfam_ids": [ "PF14739" ], "protein_name": "Coiled-coil domain-containing protein 78", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDQRPELLSSMEYVASPDPKPGVPLRVAENVAPGAEDWLPSASGHLAWATSLETEHQTHLELSEEQRLQISKELVDLQIATHHLREQHEAEVFELRREILRLESRVLELELHGNGACQGHKVQPMANLGQHQVPPLEPPGGQQKLQEELKWLLEHHRARQQALETQVGVLSQQLQGAREEARTTGQQLASQAMVLASCKGQLRQAEAENTQLQLQLKKMNEEYAVRLQHYARETVENASSTNQAALQAFLESTLQDIRAAHRTREQQLAQAARTYRKRLADLNQRQELLLTTCRATFATAINLEPLPMHWATELSHPRENEYGRHRTLLLYPEKGSGETSKENKSQPLALDTASWAQIQQRLQDFSQDTQAELERERAQLMVRATMAEQQLSELQEYVDQHLGRYKQEILKLRKLVNIGDPQGVEAVSSPGSGGARL", "sequence_length": 437, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d9f1c45f02eec1290239168ca5d4b7e73a297d60bc6ace623496f026d3925f29", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/D3Z5T1.json", "taxon_id": "10090", "uniprot_accession": "D3Z5T1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Xenopus laevis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4472-pf14739.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14739", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4472-pf14739.yaml" } ], "pfam_ids": [ "PF14739" ], "protein_name": "Coiled-coil domain-containing protein 78", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSTEDRETPLKDQIRRLTNENVQLQDRNERLYAKLGELQDKMGKLAGSKTDLSSKLVLSEEEKLKISKELIELQIETNKIREHYEAETFELKNTILTLENRLMSLELQKEKLAGEHESVKERLQAVDANRKELADEYIVLKSNYLALSKEHEKEVAKNDELSMELLNLASRRGQDETYSQSRALVNEATAELDRVKAMVNRLSARNIKPEDLVATEYERQKLERNLLGNQDHIREEIENMKKIHETQQQRLEERIIAMGKELQEAKRAIRNTQHKMAEQSAVLLTSQSQLQETEAQNSHLQLQLKELNEEYRSRLNRYIQDLADYVDGTARSKGDGTRMKHFVDNMLSDIKASHRSREEQLAGAARQYKKRMQNLIKKHQSLLIAYRMQREQLLASGNQDVEPGPPEHHFTITDPELQSQVGLELNRLREDKARLETQIHDLKEKKRLSDAGTSNQHVEHGGKLQEESWAEIRKQLREFTHNTQEELERERSQLLSRALVAEEQVAELQDYVDKHLARYKQEILRLRKLLGNEEQRAVSADAPQSLLIRALRRNSHEM", "sequence_length": 559, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e24f499606dd71aa6686be2b308f06792b9255654b8272dc7b69e62e2a32eb85", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q66KE8.json", "taxon_id": "8355", "uniprot_accession": "Q66KE8", "uniprot_release": "2026_03" } ], "pfam_id": "PF14739", "short_name": "DUF4472", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4470-ipr027974.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027974", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4470-ipr027974.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/dynein-assembly-factor-3-c-terminal-domain-ipr028235.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028235", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dynein-assembly-factor-3-c-terminal-domain-ipr028235.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4471-pf14740.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14740", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4471-pf14740.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4470-pf14737.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14737", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4470-pf14737.yaml" } ], "pfam_ids": [ "PF14737", "PF14740" ], "protein_name": "Dynein axonemal assembly factor 3 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLWGISSALDLYEEYLRAFKIKDDPLPEDEHAREEAEEAAGDNTLNTLNILICGGADPRHVIKTLAKRYTHRIRPKLNIYLLDGCAEIEARNMLLLGVALEDPESFNLVSKVHLFMDLYGNAVIRPSSHHYMAAKGRTLLKMVTNEEELQRLAPMLNIEGLKYKERDGFEMAFTFWQPQPWNVFEVTAYWEQRSRALLGTRYDHRNGAFDWDLSMTLKERGGQQICSQEYRYWRETGVAFVFPEYEHCKPNKTLAVGLVRNGRNFIHRGYVGDIQTGPFCGFGLRTVEERMHHSVHGDNDYRATDITERNLMEFFHELLTQTAYEHDTTRSRRYGSVQLLMTPLLNHQEEDAAGQAAYDKPWIHVPGVTVHFVSPMEMEQLKKGAAHWNNMFDIVFMAYNYYSFLSKDFFQAMRAQSLFILETKLMTVERKDRVQEYESKAKELMKDAGLKAAINYQAINGKNMWLKYKKTDKDEQEDEAVTEAMPESTFKYDTDTDYGEPAEEYTGLVIEEIPSSNQTVAAIKKEVEAEGPLQPKTNFP", "sequence_length": 540, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c2ecd7091e43d78f189e7e48114b48edb5864827124122b1b4dcff1dc6bd39d5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1ZB91.json", "taxon_id": "7227", "uniprot_accession": "A1ZB91", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4470-ipr027974.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027974", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4470-ipr027974.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/dynein-assembly-factor-3-c-terminal-domain-ipr028235.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028235", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dynein-assembly-factor-3-c-terminal-domain-ipr028235.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4471-pf14740.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14740", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4471-pf14740.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4470-pf14737.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14737", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4470-pf14737.yaml" } ], "pfam_ids": [ "PF14737", "PF14740" ], "protein_name": "Dynein axonemal assembly factor 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTPAGSGTGYGSVSWWGLSPALDLQAESPPVDPDSQSKTERKVPELDALLLGSVDGRHMLRTLARAALWPLRSFNFYVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLELWGNALLRPSVAAFLRAQASHLANLVLEPDRLEEQLPWLSLRLLKFRERDALEAVFRFWSGGEKGPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHIQEFRRWRDTGVAFELRDLSAYHVPNRTLASGRLLSHRGERVAARGYWGDIATGPFMAFGIEADDQSLLRTRNGQPVKTASEITQHNVTELFREVAAWRGPRAIQGNVEETESPEPDVPAQEPFTIHFLPLDSSQTLHHKTCYQGRFQLLYVSCGMVHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIARVAGFAPHTATKPSETFARFYKLGDSTPGGGDSAVESGPAPSKVESTRAPLPESISPPQANQAPSLEAMSPPLADLAPPLETMCPPQANQAPPLEALSPSKADQIPPLEAMSPPQAKLVLPVEAISLPQADLASPPEVISPLQEAMATSWVNAPPKHVT", "sequence_length": 586, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "37004078c4e1bf2aa41c7a391c85a1bb38280a3d87693586353bfc98bb8ed1bf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UYV8.json", "taxon_id": "10090", "uniprot_accession": "Q3UYV8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4470-ipr027974.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027974", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4470-ipr027974.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/dynein-assembly-factor-3-c-terminal-domain-ipr028235.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028235", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/dynein-assembly-factor-3-c-terminal-domain-ipr028235.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4471-pf14740.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14740", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4471-pf14740.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4470-pf14737.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14737", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4470-pf14737.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8N9W5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF14737", "PF14740" ], "protein_name": "Dynein axonemal assembly factor 3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8f0e90b97e1cf85db13687eb52dcb34683c7868ef7f1db53a5d80adc74db4cb6", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTTPAGSGSGFGSVSWWGLSPALDLQAESPPVDPDSQADTVHSNPELDVLLLGSVDGRHLLRTLSRAKFWPRRRFNFFVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLEVWGNALLRPPVAAFVRAQADLLAHLVPEPDRLEEQLPWLSLRALKFRERDALEAVFRFWAGGEKGPQAFPMSRLWDSRLRHYLGSRYDARRGVSDWDLRMKLHDRGAQVIHPQEFRRWRDTGVAFELRDSSAYHVPNRTLASGRLLSYRGERVAARGYWGDIATGPFVAFGIEADDESLLRTSNGQPVKTAGEITQHNVTELLRDVAAWGRARATGGDLEEQQHAEGSPEPGTPAAPTPESFTVHFLPLNSAQTLHHKSCYNGRFQLLYVACGMVHLLIPELGACVAPGGNLIVELARYLVDVRQEQLQGFNTRVRELAQAAGFAPQTGARPSETFARFCKSQESALGNTVPAVEPGTPPLDILAQPLEASNPALEGLTQPLQGGTPHCEPCQLPSESPGSLSEVLAQPQGALAPPNCESDSKTGV", "sequence_length": 541, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8f0e90b97e1cf85db13687eb52dcb34683c7868ef7f1db53a5d80adc74db4cb6", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N9W5.json", "taxon_id": "9606", "uniprot_accession": "Q8N9W5", "uniprot_release": "2026_03" } ], "pfam_id": "PF14740", "short_name": "DUF4471", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14747", "short_name": "DUF4473", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14751", "short_name": "DUF4474", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fam221-pf14753.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14753", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fam221-pf14753.yaml" } ], "pfam_ids": [ "PF14753" ], "protein_name": "Protein FAM221A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERLTLPLGGAAAVDEYLEYRRIVGEDDGGKLFTPEEYEEYKRKVLPLRLQNRLFVSWRSPTGMDCKLVGPETLCFCTHRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEKPVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIGVPSVEFLESPITAVDSPFLKAFQASSSSSPETLTDVGTSSQVSSLRRPEEDDMAFFERRYQERMKMEKAAKWKGKAPLPSATKPS", "sequence_length": 298, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "faafe209a438c9056372dcfd07eddeb72d5b2d28b5c7e8ad2038f013a49a0c15", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4D161.json", "taxon_id": "9606", "uniprot_accession": "A4D161", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fam221-pf14753.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14753", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fam221-pf14753.yaml" } ], "pfam_ids": [ "PF14753" ], "protein_name": "Protein FAM221B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAHEIIEEPHITMDAEKHPPSKDPSAEDLQENHISESFLKPSTSETPLEPHTSESPLVPSPSQIPLEAHSPETHQEPSISETPSETPTYEASLDSPISVVPEKHLTLPPQSRDYVCLSSSDTLKEDLSSESSSNEVPWTRRSTHLSESESLPEHCLSGPSSQVQVDTTEKQEEEAGEVEKGVDASDSTAHTAQPGHQLGNTARPVFPARQTELVEVAKAMHREEFGAQVNNLFQWEKDAALNAIQTGLYIGWRCPHYLWDCFRIGDESRCFCGHLLREHRIISDISVPCKVSQCRCFMFCFIPSRPEEVGEFWLKRRATFDPKAWRAQCRCKHSHEEHAATGPHPCRHHGCCCGCFESNFLCAACDRRWEEHETFFDTQKTRQRGGRPRGTDTVSNWHRPL", "sequence_length": 402, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8272afdcd415be51659e94789fa2835b339978b9dc4c356bf65e82311abb26eb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A6H8Z2.json", "taxon_id": "9606", "uniprot_accession": "A6H8Z2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fam221-pf14753.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14753", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fam221-pf14753.yaml" } ], "pfam_ids": [ "PF14753" ], "protein_name": "Protein FAM221B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEANKTTEGPQDTQDAKEQPSLEDTNAEDLYEATTHETPLQPSSSQKHFQPPEIHLETPASLNPDTKGAEGLQDSSVSGTPPVKSSSSGLLSLPPQLSPQSVTSLEKAIAEIPLEEFGYDSPISKVKEEPLQLSPTANIPEYGSPISEVQKESLEVSPTANIPEYGSPISEVQKEPLEVSSTANIPKYESPVSEVQKEPLEVSPTASIPESSHELTSDKVPQTQVPESEHFPKHSFSESPTQAKEDESTKEGEAGEDELAVGTSKIPAAKPGLRAKKKKEKRAGGVTSRPVVPAKRAELVEMAKAVHREQFDDQVNNLFQWEKDSTLKAIQTGIYIGWRCPHYLWDCFRIGDESKCFCGHLLREHQIISDLSVPCSVSQCRCLMFCFIPSRPEEVGEFWLKKRATFDPKAWRAQCRCKHTHEEHAATGAHPCRHRGCFCPSFESNFLCVACDRRWEEHETFFETGDTRRKGKRPYGANNIKNWHRTY", "sequence_length": 487, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3a6ede2472257474681b9afc9a8568642452b6ca61b2e96d7c92e6441d3665f2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C627.json", "taxon_id": "10090", "uniprot_accession": "Q8C627", "uniprot_release": "2026_03" } ], "pfam_id": "PF14753", "short_name": "FAM221", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4476-ipr028011.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028011", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4476-ipr028011.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4476-pf14771.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4476-pf14771.yaml" } ], "pfam_ids": [ "PF14771" ], "protein_name": "Proline and serine-rich protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKKSFETVLDEIRKAVLTEYKLKAIEYVHGYFSSEQVVDLLRYFSWAEPQLKAMKALQHKMVAVHPAEVVSILSCFTFSKDKLAALELLASNIVDAQNSRPIEDLFRINMSEKKRCKRVLEQASKAGCKAPHAMISSCGTFPGNPYPKGKPSRINGIFPGTPLKKDGEEITNEGKGIAARILGPSKPPPSTYNPHKPVPYPIPPCRPHATIAPSAYNNAGLVPLANVIAPGVPPPPPYTPNPAGTDNEDLSSQSKPTQSQTFSTPASQLFSPHGSSNPSTPAATPVPAVSPAKAVNHPSVSAAATGAGMSATNTALAVFPTPQPNTPNPTVIRTPSVPATPVTSTHSTTPTPVPSVFSGLVPLPGLSATPTLPTQASSISRVTLASSETFASTCAPFSGHSSASSTAGSASNPITAPLSSVFAGLPLPFPPASHSIATPTPSVIASAAGPHGVNSPLLSALKGFLTSNDTHLINSSALPSAVTSGLASLSSLPNRNSDSPASATNKCYPPAAVPAAQRSSTPGLAMFPGLQSPVASATSVAPTLPAQSPLATPSTAVPVSCGSSGSLLHGPHAGGISSAPAAATMPVMIKSEPTSPPPSAFKGPAHPGTPVRGTLGLSGALGRGYPTTSVPISVSTCLNPALSGLSSLSTPLAGSMSLPPHASSTPIAPVFTALPPFTSLTNSFPLPGSPSLNPAVSLAGSSTTTTSAAVHPSSATVRSVLPTSNASPAAFPLNLSTAVPSLFAVTQGPLPTSNPSYPGFPVSSAPSGAPTLPSFPGLQAPSTVAVTPLPVAASAPSPAPVLPGFASAFSSNFNSALVAQAGLSSGLQAAGSSVFPGLLSLPGIPGFSQAPPQSSLQELQHSAAAQSALLQQVHSASALESYPAQADGFPSYPSTPGTPFSLQTGLSQSGWQ", "sequence_length": 913, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea988618c78bc0367a2c71d23143a4c3f1ec8e553df62873127513831759b030", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5PRE5.json", "taxon_id": "10090", "uniprot_accession": "Q5PRE5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4476-ipr028011.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028011", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4476-ipr028011.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4476-pf14771.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4476-pf14771.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q86XN7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF14771" ], "protein_name": "Proline and serine-rich protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ab32f5cdbab10e4f405013613723141092c9873e8ecd98dd742b88b96f34bab9", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDKKSFEMVLDEIRKAVLTEYKLKAIEYVHGYFSSEQVVDLLRYFSWAEPQLKAMKALQHKMVAVQPTEVVNILNCFTFSKDKLVALELLASNIIDAQNSRPIEDLFRVNMSEKKRCKRILEQAFKGGCKAPHAMISSCGTIPGNPYPKGRPSRINGIFPGTPLKKDGEECTNEGKGIAARILGPSKPPPSTYNPHKPVPYPIPPCRPHATIAPSAYNNAGLVPLANVIAPPPPPYTPNPVGTENEDLSNPSKPIQNQTFSTPASQLFSPHGSNPSTPAATPVPTASPVKAINHPSASAAATVSGMNLLNTVLPVFPGQVSSAVHTPQPSIPNPTVIRTPSLPTAPVTSIHSTTTTPVPSIFSGLVSLPGPSATPTAATPTPGPTPRSTLGSSEAFASTSAPFTSLPFSTSSSAASTSNPNSASLSSVFAGLPLPLPPTSQGLSNPTPVIAGGSTPSVAGPLGVNSPLLSALKGFLTSNDTNLINSSALSSAVTSGLASLSSLTLQNSDSSASAPNKCYAPSAIPTPQRTSTPGLALFPGLPSPVANSTSTPLTLPVQSPLATAASASTSVPVSCGSSASLLRGPHPGTSDLHISSTPAATTLPVMIKTEPTSPTPSAFKGPSHSGNPSHGTLGLSGTLGRAYTSTSVPISLSACLNPALSGLSSLSTPLNGSNPLSSISLPPHGSSTPIAPVFTALPSFTSLTNNFPLTGNPSLNPSVSLPGSLIATSSTAATSTSLPHPSSTAAVLSGLSASAPVSAAPFPLNLSTAVPSLFSVTQGPLSSSNPSYPGFSVSNTPSVTPALPSFPGLQAPSTVAAVTPLPVAATAPSPAPVLPGFASAFSSNFNSALVAQAGLSSGLQAAGSSVFPGLLSLPGIPGFPQNPSQSSLQELQHNAAAQSALLQQVHSASALESYPAQPDGFPSYPSAPGTPFSLQPSLSQSGWQ", "sequence_length": 944, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ab32f5cdbab10e4f405013613723141092c9873e8ecd98dd742b88b96f34bab9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q86XN7.json", "taxon_id": "9606", "uniprot_accession": "Q86XN7", "uniprot_release": "2026_03" } ], "pfam_id": "PF14771", "short_name": "DUF4476", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nucleolus-and-neural-progenitor-protein-like-n-terminal-domain-ipr027951.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nucleolus-and-neural-progenitor-protein-like-n-terminal-domain-ipr027951.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nepro-n-pf14780.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14780", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nepro-n-pf14780.yaml" } ], "pfam_ids": [ "PF14780" ], "protein_name": "Ribonuclease MRP subunit P64", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMAAVPPGLEPWNRVRIPKAGNRSAVTVQNPGAALDLCIAAVIKECHLVILSLKSQTLDAETDVLCAVLYSNHNRMGRHKPHLALKQVEQCLKRLKNMNLEGSIQDLFELFSSNENQPLTTKVCVVPSQPVVELVLMKVLGACKLLLRLLDCCCKTFLLTVKHLGLQEFIILNLVMVGLVSRLWVLYKGVLKRLILLYEPLFGLLQEVARIQPMPYFKDFTFPSDITEFLGQPYFEAFKKKMPIAFAAKGINKLLNKLFLINEQSPRASEETLLGISKKAKQMKINVQNNVDLGQPVKNKRVFKEESSEFDVRAFCNQLKHKATQETSFDFKCSQSRLKTTKYSSQKVIGTPHAKSFVQRFREAESFTQLSEEIQMAVVWCRSKKLKAQAIFLGNKLLKSNRLKHLEAQGTSLPKKLECIKTSICNHLLRGSGIKTSKHHLRQRRSQNKFLRRQRKPQRKLQSTLLREIQQFSQGTRKSATDTSAKWRLSHCTVHRTDLYPNSKQLLNSGVSMPVIQTKEKMIHENLRGIHENETDSWTVMQINKNSTSGTIKETDDIDDIFALMGV", "sequence_length": 567, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e39088ee375073dc76f1d344e7e47807e67722f16063a1661e9441072369f5ce", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NW34.json", "taxon_id": "9606", "uniprot_accession": "Q6NW34", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nucleolus-and-neural-progenitor-protein-like-n-terminal-domain-ipr027951.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nucleolus-and-neural-progenitor-protein-like-n-terminal-domain-ipr027951.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nepro-n-pf14780.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14780", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nepro-n-pf14780.yaml" } ], "pfam_ids": [ "PF14780" ], "protein_name": "Nucleolus and neural progenitor protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAVRPGAEPWNRVRIPQAGNCSTLTVRDPSATLDICTAAVTKGCHLVTQSLKSQTLDAEVDVLCSVLYSNHNRLGHHKPHLALRQVEQCLKRLKHMNLEGSIEDLSQLLSANATQPGATENRVVPSQPVVEVVLMKVLGGCKLLLRLLDCCCKAFLLTVKHLGLKEFIILNLVMVGLVSRLWVLHKGLLRRLISLYEPLLSLRQEISSIHPMPYFKDFAFPSDITDFLGPSYLEVFKVKTPAASATKGVTKLLNKLFLMREQLPKMNEDTLDRLSKPSEQMTSNPQSTVDLGQPVKACKRTRKEKPLGFDLRAFCTRLGNKATQETNRDFKYSQSKLKTTKLPSQQLRTHWANDTVQRIRKTKTFAQLSEEIEMAIVWSRSKKLKTQATFLGNKLLKSNRFRHVESQGYSLTKKLQCMKTSLCNCLLRGSRTSTSEHPPRQRRSKYKVLSRQRKPQRKLQSTLLKETQQVPEGTLKNTRDSSAKRRCSGTVQRSDVCPNGKQVLRKLAKPDLKTKVVVHGNLTGGSRNESGFQAKTQMHTHNAPDTAKEADDIDDIFALMGV", "sequence_length": 564, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "52642e7b583c402cdb9768c387403d10acc6bcf3deccf18356a68f9a6ad8353d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R2U2.json", "taxon_id": "10090", "uniprot_accession": "Q8R2U2", "uniprot_release": "2026_03" } ], "pfam_id": "PF14780", "short_name": "NEPRO_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/amp-nucleosidase-activity-go0008714.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008714", "section": "canonical_examples", "url": 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"data/traits/function/molecular_function/go/pyrimidine-5-nucleotide-nucleosidase-activity-go0047405.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0047405", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/pyrimidine-5-nucleotide-nucleosidase-activity-go0047405.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/nucleotide-5-monophosphate-nucleosidase-ppnn-nf038390.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF038390", "section": "canonical_examples", "url": 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"NOT_IN_REGISTRY", "reviewed": true, "sequence": "MACEPPTDPGGAAGPLPTSTLGCNILPQGNPPGWGQELHNGQVLTVLRIDNTCAPISFDLGAAEEQLQAWGIQVPAEQYRNLAESALLEPQVRRYIIYNSRPMRLAFAVVFYVLVWANIYSTSQMFALGNQWAGVLLATLAAFSLTLTLVLVFERQQRKANTNTDLRLVAANGALLRHRVLLGVTDTVEGCQSVIQLWFVYFDLENCVQFLSDHVQEMKRSQESLLRSRLSQLCVVMETGVSPVVEGPEDLEDAPLLPSTPGPQERPLTQTELYQLVPEAEPEEMARQLLAVFGGYYTRLLVTSRLPQSMGTRHMDSARIPCPCQLIEVHVLGTGCCPFLAR", "sequence_length": 342, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "62793be0977c330f8c53b7e81ef335ac147fa721dc08e73425b438d7770cb7b8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R239.json", "taxon_id": "10090", "uniprot_accession": "Q8R239", "uniprot_release": "2026_03" } ], "pfam_id": "PF14800", "short_name": "DUF4481", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/soga-1-2-like-coiled-coil-ipr027882.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/soga-1-2-like-coiled-coil-ipr027882.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/soga-coiled-coil-domain-ipr027881.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/soga-coiled-coil-domain-ipr027881.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/soga-pf11365.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11365", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/soga-pf11365.yaml" } ], "pfam_ids": [ "PF11365", "PF14818" ], "protein_name": "Microtubule cross-linking factor 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METPAGESSARGYGPPPAPAPAAERKKSHRAPSPARPKDVAGWSLAKGRRGTGPGSATACGTASSARPDKKGRAVAPGTRGTGPRVAGVRTGVRAKGRPRPGTGPRPPPPPPSLTDSSSEVSDCASEEARQLGLELALSSDAESAAGGPAGTRTGQPPQPAQSGQQPPRPPASPDEPSVAASSVGSSRLPLSASLAFSDLTEEMLDCGPGGLVRELEELRSENDYLKDEIEELRAEMLEMRDVYMEEDVYQLQELRQQLDQASKTCRILQYRLRKAERRSLRAAQTGQVDGELIRGLEQDVKVSKDISMRLHKELEVVEKKRMRLEEENEGLRQRLIETELAKQVLQTELDRPREHSLKKRGTRSLGKTDKKPTAQEDSADLKCQLHFAKEESALMCKKLTKLAKENDSMKEELLKYRSLYGDLDAALSAEELADAPHSRETELKVHLKLVEEEANLLSRRIVELEVENRGLRAEMDDMKDHGGGGGPEARLAFSSLGGECGESLAELRRHLQFVEEEAELLRRSSAELEDQNKLLLNELAKYRSEHELDVTLSEDSCSVLSEPSQEELAAAKLQIGELSGKVKKLQYENRVLLSNLQRCDLASCQSTRPMLETDAEAGDSAQCVPAPLGETLEPHAARLCRAREAEALPGLREQAALVSKAIDVLVADANGFSVGLRLCLDNECADLRLHEAPDNSEGPRDAKLIHAILVRLSVLQQELNAFTRKADVALGSSGKEQPEPFPALPALGSQGPAKEIMLSKDLGSDFQPPDFRDLLEWEPRIREAFRTGDLESKPDPSRNFRPYRAEDNDSYASEIKDLQLVLAEAHDSLRGLQEQLSQERQLRKEEADSFNQKMVQLKEDQQRALLRREFELQSLSLQRRLEQKFWSQEKNILVQESQQFKHNFLLLFMKLRWFLKRWRQGKVLPSEEDDFLEVNSMKELYLLMEEEEMNAQHSDNKACTGESWTQNTPNECIKTLADMKVTLKELCWLLQDERRGLTELQQQFAKAKATWETERAELKGHASQMELKAGKGASERPGPDWKAALQREREEQQHLLAESYSAVMELTRQLQLSERHWSQEKLQLVERLQGEKQQVEQQVKELQNRLSQLQKAAEPWVLKHSDMEKQDNSWKEARSEKTHDKEGVSEAELGGTGLKRTKSVSSMSEFESLLDCSPYLAGGDARNKKLPNGPAFAFVSTEPVEPEKDAKEKAGLSTRDCSHIGSLACQEPAGRQMQRSYTAPDKTGIRVYYSPPVARRLGVPVVHDKEGKILIEPGFLFTTAKPKESAEADGLAESSYSRWLCNFSRQRLDGGSGASTSGSGPAFPALHDFEMSGNMSDDMKEITNCVRQAMRSGSLERKVKNTSSQTVGVATVGTQTIRTVSVGLQTDPPRSSLHSKSWSPRSSSLVSVRSKQISSSLDKVHSRIERPCCSPKYGSPKLQRRSVSKLDSTKDRSLWNLHQGKQNGSAWARSTTTRDSPVLRNINDGLSSLFSVVEHSGSTESVWKLGMSEARTKPEPPKYGIVQEFFRNVCGRAPSPTTAAGEESCKKPEPLSPASYHQPEGVSRILNKKAAKAGGSEEVRPTMLSQVGKDGILRDGDGSLILPSEDAVCDCSAQSLASCFIRPSRNTIRHSPSKCRLHPSESGWGGEERAAPQ", "sequence_length": 1654, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1664e95a0530db3c88ffb9320dd2c11ccb5d013991ef3782dc09d02b0c6031e0", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/E1U8D0.json", "taxon_id": "10090", "uniprot_accession": "E1U8D0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/soga-1-2-like-coiled-coil-ipr027882.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/soga-1-2-like-coiled-coil-ipr027882.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/soga-coiled-coil-domain-ipr027881.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/soga-coiled-coil-domain-ipr027881.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/soga-pf11365.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11365", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/soga-pf11365.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/soga1-2-like-cc-pf14818.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14818", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/soga1-2-like-cc-pf14818.yaml" } ], "pfam_ids": [ "PF11365", "PF14818" ], "protein_name": "Microtubule cross-linking factor 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAPAAEPPVRGCGPQPAPAPAPAPERKKSHRAPSPARPKDVAGWSLAKGRRGPGPGSAVACSAAFSSRPDKKGRAVAPGARGAGVRVAGVRTGVRAKGRPRSGAGPRPPPPPPSLTDSSSEVSDCASEEARLLGLELALSSDAESAAGGPAGVRTGQPAQPAPSAQQPPRPPASPDEPSVAASSVGSSRLPLSASLAFSDLTEEMLDCGPSGLVRELEELRSENDYLKDEIEELRAEMLEMRDVYMEEDVYQLQELRQQLDQASKTCRILQYRLRKAERRSLRAAQTGQVDGELIRGLEQDVKVSKDISMRLHKELEVVEKKRARLEEENEELRQRLIETELAKQVLQTELERPREHSLKKRGTRSLGKADKKTLVQEDSADLKCQLHFAKEESALMCKKLTKLAKENDSMKEELLKYRSLYGDLDSALSAEELADAPHSRETELKVHLKLVEEEANLLSRRIVELEVENRGLRAEMDDMKDHGGGCGGPEARLAFSALGGGECGESLAELRRHLQFVEEEAELLRRSSAELEDQNKLLLNELAKFRSEHELDVALSEDSCSVLSEPSQEELAAAKLQIGELSGKVKKLQYENRVLLSNLQRCDLASCQSTRPMLETDAEAGDSAQCVPAPLGETHESHAVRLCRAREAEVLPGLREQAALVSKAIDVLVADANGFTAGLRLCLDNECADFRLHEAPDNSEGPRDTKLIHAILVRLSVLQQELNAFTRKADAVLGCSVKEQQESFSSLPPLGSQGLSKEILLAKDLGSDFQPPDFRDLPEWEPRIREAFRTGDLDSKPDPSRSFRPYRAEDNDSYASEIKELQLVLAEAHDSLRGLQEQLSQERQLRKEEADNFNQKMVQLKEDQQRALLRREFELQSLSLQRRLEQKFWSQEKNMLVQESQQFKHNFLLLFMKLRWFLKRWRQGKVLPSEGDDFLEVNSMKELYLLMEEEEINAQHSDNKACTGDSWTQNTPNEYIKTLADMKVTLKELCWLLRDERRGLTELQQQFAKAKATWETERAELKGHTSQMELKTGKGAGERAGPDWKAALQREREEQQHLLAESYSAVMELTRQLQISERNWSQEKLQLVERLQGEKQQVEQQVKELQNRLSQLQKAADPWVLKHSELEKQDNSWKETRSEKIHDKEAVSEVELGGNGLKRTKSVSSMSEFESLLDCSPYLAGGDARGKKLPNNPAFGFVSSEPGDPEKDTKEKPGLSSRDCNHLGALACQDPPGRQMQRSYTAPDKTGIRVYYSPPVARRLGVPVVHDKEGKIIIEPGFLFTTAKPKESAEADGLAESSYGRWLCNFSRQRLDGGSAGSPSAAGPGFPAALHDFEMSGNMSDDMKEITNCVRQAMRSGSLERKVKSTSSQTVGLASVGTQTIRTVSVGLQTDPPRSSLHGKAWSPRSSSLVSVRSKQISSSLDKVHSRIERPCCSPKYGSPKLQRRSVSKLDSSKDRSLWNLHQGKQNGSAWARSTTTRDSPVLRNINDGLSSLFSVVEHSGSTESVWKLGMSETRAKPEPPKYGIVQEFFRNVCGRAPSPTSSAGEEGTKKPEPLSPASYHQPEGVARILNKKAAKLGSSEEVRLTMLPQVGKDGVLRDGDGAVVLPNEDAVCDCSTQSLTSCFARSSRSAIRHSPSKCRLHPSESSWGGEERALPPSE", "sequence_length": 1661, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0ff04768a8a9a2d647df96d5abb35f4dfe49ec02e211e81add9e4aa1d0e8c430", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O94964.json", "taxon_id": "9606", "uniprot_accession": "O94964", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/microtubule-bundle-go0097427.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/microtubule-bundle-go0097427.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/soga-1-2-like-coiled-coil-ipr027882.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/soga-1-2-like-coiled-coil-ipr027882.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/soga-coiled-coil-domain-ipr027881.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/soga-coiled-coil-domain-ipr027881.yaml" } ], "pfam_ids": [ "PF11365", "PF14818" ], "protein_name": "Microtubule cross-linking factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METLNGPAGGGAPDTKPQPAGQHHRHHHLHPLAERRRLHRAPSPARPFLKDLHTRPATATPSAGRAPTPAAPRSPSLAGKAPPSPGPPAAPGRLSRRSGVVPGAKDKPPPGAGARSAGGAKAVPGTRRAARAGPAEPLSRVGRPTGAEPPPAVAKGRKTKRGPGTPPARAVVPPARASRVPAVTLSVTSVAGCRINHTDSSSDLSDCASEPLSDEQRLLPAASSDAESGTGSSDREPIRGAPTPSSGSRGPPPGSPEPPILLAAPPVASACLGGRSSPGGASTGSPGPGSQEDVGGRAPPERTILGTSKEPSLGEQPRLLVVAEEEELLREMEELRSENDYLKDELDELRAEMEEMRDSYLEEDGYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDLKVAKDVSVRLHHELETVEEKRAKAEDDNETLRQQMIEVEVSRQALQNEVERLRESSLKRRGSREMYKEKKLVNQDDSADLKCQLQFVKEEASLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPPSTREAELKLRLKLVEEEASILGRKIVELEVENRGLKAEMEDIRVQHEREGTGRDHVPSTPTSPFGDSMESSTELRRHLQFVEEEAELLRRSISEIEDHNRQLTHELSKFKFEPHQESGWLGDGVSKGPAASVPLQEELKSARLQIDELSGKVLKLQCENRLLLSNAQRGDLAAHLGLRAPSPRDSDAESDAGKKESDGEEGRLPQPKREGPVGGESDSEDMFEKTSGFGSGKPSEASEPCPAELLRVREDTECLVTIKLEAQRLERTVERLISDTDGFIHDSGLRGNGLASPGVQGGGGEGNSPSEPHLLETINVRMKAFRKELQAFLEQMSRIVDGLSPLSHLTESSSFLSTVTSVSRDSPIGTLGKELGPDLQSKLREQLEWQLNQDRGDEREGLRLRATRELHRRADGDSGSHHGLGGQSCFNLEMEEDHLYALRWKELEMHSLALQNTLHKRTWSDEKNLLQQELRSLKQNIFLFYVKLRWLLKHWRQGKQMEEGGEDLEESEHPENVPGLAELGVQGVHQTDGIDQEDADQGCSLPMGEHAPHSLVQISEHGSRLQSSDGGPLNKQVVENQQLFRALKALLEDFRSELREDEHARLRLQQQYASDKAAWDVEWAVLKCRLEQLEEKTEKSLGELDSSAEGKGALKKEREVHQKLLADSHSLVMDLRWQIHHREKNWNREKVELLERLDSERQEWGRQKEELLWRVEQLQKEKSPRRSGSFLCSRREDDTRPYPHQGSLHSSRPVSMWPCEDADSIPFEDRPLSKLKESDRCSASENLYLDALSLDDDPGDPPPLRNCLAEEEESRKGNLQRAVSVSCMSEFQRLMDVSPFLPEKGLPSAGSKEDVTPPLSPDDLKYIEEFHSNDWDYASPRAEADRPPDPWADRTEMGRVGHEATTEPCPDPSWYLTTSVTMTTDTMTSPEHCQKQPLRTHVLTEQSGVHVLHSPPAIRRVDSIASGGEGRSRADPEGPFPMSRARGNLADAKGGHPEPVLNRWPCTPPRHPRDCVEGSLRPLDRPICPSLGFASPLNSLDMSKNMSDDMKEVAFSVRNAICAGPAEPHVRDMACQTNGSRTAGTQTIQTISVGLQTEALRASGVTSSPHKCLTPKAGGGTTPVSSPSRSLRSRQVAPAIEKVQAKFERTCCSPKYGSPKLQRKPLSKADQPNSRTSPGIPQKGFSESAWARSTTTRESPVHTTINDGLSSLFNIIDHSPIGVRAGSRSRSAEPRQELGPGQETGTSSRGRSPSPLGVGSETFREEGGESTPVRQDLSAPPGYTLTENVARILNKKLLEHALKEERKQASHGSSGLTSDSHTGEPVPAEPGSMEELPCSALAPSLEPCFSRPERPANRRLPSRWAPPSPTASQSQSPGHPMSMEEHGEEDPPEEKPHL", "sequence_length": 1945, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f795844c63a06124f91f665ca43ce61e531662667bf9214af73516cfeeef4428", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UHU5.json", "taxon_id": "10090", "uniprot_accession": "Q3UHU5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/soga-1-2-like-coiled-coil-ipr027882.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/soga-1-2-like-coiled-coil-ipr027882.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/soga1-2-like-cc-pf14818.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14818", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/soga1-2-like-cc-pf14818.yaml" } ], "pfam_ids": [ "PF14818" ], "protein_name": "Uncharacterized protein KIAA0408", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLHKQWENTETNWHKEKMELLDQFDNERKEWESQWKIMQKKIEELCREVKLWRKININESAKIIDLYHEKTIPEKVIESSPNYPDLGQSEFIRTNHKDGLRKENKREQSLVSGGNQMCKEQKATKKSKVGFLDPLATDNQKECEAWPDLRTSEEDSKSCSGALSTALEELAKVSEELCSFQEEIRKRSNHRRMKSDSFLQEMPNVTNIPHGDPMINNDQCILPISLEKEKQKNRKNLSCTNVLQSNSTKKCGIDTIDLKRNETPPVPPPRSTSRNFPSSDSEQAYERWKERLDHNSWVPHEGRSKRNYNPHFPLRQQEMSMLYPNEGKTSKDGIIFSSLVPEVKIDSKPPSNEDVGLSMWSCDIGIGAKRSPSTSWFQKTCSTPSNPKYEMVIPDHPAKSHPDLHVSNDCSSSVAESSSPLRNFSCGFERTTRNEKLAAKTDEFNRTVFRTDRNCQAIQQNHSCSKSSEDLKPCDTSSTHTGSISQSNDVSGIWKTNAHMPVPMENVPDNPTKKSTTGLVRQMQGHLSPRSYRNMLHEHDWRPSNLSGRPRSADPRSNYGVVEKLLKTYETATESALQNSKCFQDNWTKCNSDVSGGATLSQHLEMLQMEQQFQQKTAVWGGQEVKQGIDPKKITEESMSVNASHGKGFSRPARPANRRLPSRWASRSPSAPPALRRTTHNYTISLRSEALMV", "sequence_length": 694, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "53fdf05da39d05a7ed8e9440230cbed3a3cd616a3b790b113b69021b5d3a9b72", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZU52.json", "taxon_id": "9606", "uniprot_accession": "Q6ZU52", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/microtubule-bundle-go0097427.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097427", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/microtubule-bundle-go0097427.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/soga-1-2-like-coiled-coil-ipr027882.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/soga-1-2-like-coiled-coil-ipr027882.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/soga-coiled-coil-domain-ipr027881.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/soga-coiled-coil-domain-ipr027881.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/soga-pf11365.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11365", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/soga-pf11365.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/soga1-2-like-cc-pf14818.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF14818", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/soga1-2-like-cc-pf14818.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9Y4B5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF11365", "PF14818" ], "protein_name": "Microtubule cross-linking factor 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4e2ff31655da55e652f8b61b14b46f427feb393004e17f472c69e4497c930672", "sequence_version": 5, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "METLNGPAGGGAPDAKLQPPGQHHRHHHLHPVAERRRLHRAPSPARPFLKDLHARPAAPGPAVPSSGRAPAPAAPRSPNLAGKAPPSPGSLAAPGRLSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPLSRAGKPPGAEPPSAAAKGRKAKRGSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCSRISHTDSSSDLSDCPSEPLSDEQRLLPAASSDAESGTGSSDREPPRGAPTPSPAARGAPPGSPEPPALLAAPLAAGACPGGRSIPSGVSGGFAGPGVAEDVRGRSPPERPVPGTPKEPSLGEQSRLVPAAEEEELLREMEELRSENDYLKDELDELRAEMEEMRDSYLEEDVYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDLKVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKTFNQDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPPSTREAELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQEREGPGRDHAPSIPTSPFGDSLESSTELRRHLQFVEEEAELLRRSISEIEDHNRQLTHELSKFKFEPPREPGWLGEGASPGAGGGAPLQEELKSARLQISELSGKVLKLQHENHALLSNIQRCDLAAHLGLRAPSPRDSDAESDAGKKESDGEESRLPQPKREGPVGGESDSEEMFEKTSGFGSGKPSEASEPCPTELLKAREDSEYLVTLKHEAQRLERTVERLITDTDSFLHDAGLRGGAPLPGPGLQGEEEQGEGDQQEPQLLGTINAKMKAFKKELQAFLEQVNRIGDGLSPLPHLTESSSFLSTVTSVSRDSPIGNLGKELGPDLQSRLKEQLEWQLGPARGDERESLRLRAARELHRRADGDTGSHGLGGQTCFSLEMEEEHLYALRWKELEMHSLALQNTLHERTWSDEKNLMQQELRSLKQNIFLFYVKLRWLLKHWRQGKQMEEEGEEFTEGEHPETLSRLGELGVQGGHQADGPDHDSDRGCGFPVGEHSPHSRVQIGDHSLRLQTADRGQPHKQVVENQQLFSAFKALLEDFRAELREDERARLRLQQQYASDKAAWDVEWAVLKCRLEQLEEKTENKLGELGSSAESKGALKKEREVHQKLLADSHSLVMDLRWQIHHSEKNWNREKVELLDRLDRDRQEWERQKKEFLWRIEQLQKENSPRRGGSFLCDQKDGNVRPFPHQGSLRMPRPVAMWPCADADSIPFEDRPLSKLKESDRCSASENLYLDALSLDDEPEEPPAHRPEREFRNRLPEEEENHKGNLQRAVSVSSMSEFQRLMDISPFLPEKGLPSTSSKEDVTPPLSPDDLKYIEEFNKSWDYTPNRGHNGGGPDLWADRTEVGRAGHEDSTEPFPDSSWYLTTSVTMTTDTMTSPEHCQKQPLRSHVLTEQSGLRVLHSPPAVRRVDSITAAGGEGPFPTSRARGSPGDTKGGPPEPMLSRWPCTSPRHSRDYVEGARRPLDSPLCTSLGFASPLHSLEMSKNLSDDMKEVAFSVRNAICSGPGELQVKDMACQTNGSRTMGTQTVQTISVGLQTEALRGSGVTSSPHKCLTPKAGGGATPVSSPSRSLRSRQVAPAIEKVQAKFERTCCSPKYGSPKLQRKPLPKADQPNNRTSPGMAQKGYSESAWARSTTTRESPVHTTINDGLSSLFNIIDHSPVVQDPFQKGLRAGSRSRSAEPRPELGPGQETGTNSRGRSPSPIGVGSEMCREEGGEGTPVKQDLSAPPGYTLTENVARILNKKLLEHALKEERRQAAHGPPGLHSDSHSLGDTAEPGPMENQTVLLTAPWGL", "sequence_length": 1905, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4e2ff31655da55e652f8b61b14b46f427feb393004e17f472c69e4497c930672", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y4B5.json", "taxon_id": "9606", "uniprot_accession": "Q9Y4B5", "uniprot_release": "2026_03" } ], "pfam_id": "PF14818", "short_name": "SOGA1-2-like_CC", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap77-pf14825.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap77-pf14825.yaml" } ], "pfam_ids": [ "PF14825" ], "protein_name": "Cilia- and flagella-associated protein 77", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPDPAKPGKDLTAWKKKKQPVHRTVSQICPPPRRPLTVVDIRTGMENERLGVVRDSMFQNPLIVKAELGKPRERSCSLPGINFNYGLYIRGLDGGVPEAIGHWNVFKQQPTCPHELTRNYIAMNRGAVKAGLVTARENMLYRELNDIRINDQEDRRQKEPPPIPPNMTFGIRSRPSTPFFDLLQHRYQQLWVQEQKATQQAIKMEKKQKVILGKLYETRSSQLRKYKPPVKLDALWHMPHFKKVASHLATFPTEADRQRALKAHKEEYAVRQGTLRMGNYTHP", "sequence_length": 283, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0901e84779f9e88efae3809bb1100550ee40d0c4978c6d70846d8156b2382e69", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A087WRI3.json", "taxon_id": "10090", "uniprot_accession": "A0A087WRI3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap77-pf14825.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap77-pf14825.yaml" } ], "pfam_ids": [ "PF14825" ], "protein_name": "Cilia- and flagella-associated protein 77", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESPRIGVVRDSMLHRPLLIKPTLGKSKSRGLSYPGPEFVFGTATTVQDGGVQEAISNWHTHTMSTTHRAAERDFIALNREGVKSGLVTAKELHQYRATHDIRRKPLTREGFRRSAPPRLSPDDSFFVSNRPSTPISELIEYKYAQRWLEEQQVRDRVLQAHQHKKAQLGRIQDTRTTLLRKSQPLPEAPSTWKLPRFQKVGAALDTFRDPEARKKAMNAHCSESVSRRGILGQGTYTVD", "sequence_length": 240, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "56c22d8f95262623bf3d60d867d03dd11bafc17200a03f157a4a620a596c9717", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2BFC9.json", "taxon_id": "7955", "uniprot_accession": "A2BFC9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap77-pf14825.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap77-pf14825.yaml" } ], "pfam_ids": [ "PF14825" ], "protein_name": "Cilia- and flagella-associated protein 77", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPEARSSGPDLTRWRKQQQPVRRTVSQVCPPPRRPLTVADIRSGMENERLGVVRDSMFQNPLIVKAAGPASVGTSYSVYDSSAVQKVIPSLAGHHIKGGPQAELGKPRERSYSLPGINFNYGLYIRGLDGGVPEAIGRWNVFKQQPTCPHELTRNYIAMNRGAVKAGLVTARENLLYRQLNDIRISDQDDRRMKKEPPPLPPNMTFGIRARPSTPFFDLLQHRYLQLWVQEQKATQKAIKLEKKQKVVLGKLYETRSSQLRKYKPPVKLDTLWHMPHFQKVGRHLDTFPTEADRQRALKAHREECAVRQGTLRMGNYTHP", "sequence_length": 320, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7b0be1401a517bba13efdded0b642b8af9b162319938371ad0c6c032992b030c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZQR2.json", "taxon_id": "9606", "uniprot_accession": "Q6ZQR2", "uniprot_release": "2026_03" } ], "pfam_id": "PF14825", "short_name": "CFAP77", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4484-ipr028115.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028115", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4484-ipr028115.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4484-pf14831.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4484-pf14831.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dennd11-pf09804.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09804", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dennd11-pf09804.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P36090", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF09804", "PF14831" ], "protein_name": "Uncharacterized protein ANR2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6e3d73b222de30c8a264fa1c01b4e871b7828617cbda544d8c09d7069c0bfdff", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNSGGEEPTIKPNVFNITQLLNSNGEKPGIACIFLSKFDMKKGNIIIWSKSINGAAIDLSNIEFKSLPAGIHEQTDDVVNFVVPKELDVCQTAKTTTYDYGIAYFKQNSFDIIENDNRIDRSKVQMFSLGVIIDVQNASSDSKKHFYKEIYHAYAANRYSSYLESLLGQWIRQRDLDKFDIFEKFFDENNQGHMAENSVEVFEHSPKERRHLVEYLPYWTRKLGPLIFPLWKASLLQSRILILVPQGESFELCNSLAYCVFLISMLPKNLIGNHVSDEYIKPIFTVSTSDIPFLESFKKGNGYVATTSEEILLYKPEIYDIVVKLTSSSTIEESPEKEVEILTASGEQNKATPLDLEVYEKLILGELQEDASTNATCRHHEVTEPISWLQFLIDGFFLLTTAGYLVAPYHLANNFKIPRHVSGPEPNNSEIQIAENLVRYFHRRTSNLYNDLKDVIQKSENIDSEQPITIAASFLTKLNLDCFSKQDHQFVKDIALKWFQRSIDISNLPECLGNLC", "sequence_length": 516, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6e3d73b222de30c8a264fa1c01b4e871b7828617cbda544d8c09d7069c0bfdff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P36090.json", "taxon_id": "559292", "uniprot_accession": "P36090", "uniprot_release": "2026_03" } ], "pfam_id": "PF14831", "short_name": "DUF4484", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4485-ipr027831.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4485-ipr027831.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4485-pf14846.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4485-pf14846.yaml" } ], "pfam_ids": [ "PF14846" ], "protein_name": "Centrosomal protein of 112 kDa", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METGSEEEKWEKLDAEFDHFVVDMKPFVLKLPHRSERQRCALWIRKLCEPSGTGAGLMGRKNRNLYAKLLLHMLRRGILEGPFTHRPEPGTLKTLPSYMSIYFDEPNQAQPKDSSPEKLPDWVRGELQTGEQRLSDSWQCSSGEDNTLVLAASDAHREQYTGKLRMRSHSVSPTYREDKQHITSKICEVHSKTSPISLDDSDIEVRLNSWNLGIENPRYLRQKPLPVSLMTPKGSLRKASSLHDDHFLSRMHEKELDMKTKMMEAKFSEEKLKLQQKHDAEVQKILERKNNELEELKILYKKKQTETEETIRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTESLNNDWEKKLHNAVAEMEKDKFELQKHHTETIQELLEDTNVRLSKMEADYVVQMQSTNHMIKELEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCNELQELKTRRNILHKEKEHLVNDYEQNVKLLKTKYDSDINLLRQEHALSTSKTSGVIEELEQNICQLKQQVQESELQRKQQVKDQENKFHMEKNHLKHTYEKKVHELQSELDKEKEDAQRKIHKFEEALKEKEEQLSRVTEVQRLQAQQADAALEEFKRQVEVNSEKVYGEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDAKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELISVNSQRKQQLIELGLLREEEKQRAAKDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIRDNDQAIKALQDELETRSHQVRSAEKKLHHKELEAQEQIMYIRQEYETKFKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQSRR", "sequence_length": 954, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "829e7b9248894b183924d87248d1c709fbfb6062d4933498522a05299c9c92a3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5PR68.json", "taxon_id": "10090", "uniprot_accession": "Q5PR68", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4485-ipr027831.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4485-ipr027831.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4485-pf14846.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14846", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4485-pf14846.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8N8E3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF14846" ], "protein_name": "Centrosomal protein of 112 kDa", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "96e0febc3c86a2d1cda18183f8cf81f2dcf414f37d1cc2a1a83fbf0721ed29cf", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEVGSEEEKWEKLDAEFDHFVVDMKPFVLKLPHRTERQRCALWIRKLCEPSGTGAGIMGRKNRNLYAKLLLHMLKRGALEGPFTHRPEPGTLKILPSYMSIYFDEPNPARAKGSSPEGLPAWVLGELETSEHKLNESWKLSSGEDNTLVQSPTDVYSREQYTGKLRVRSHSLSPTHREDGQNITPKICEVYSKKSPVSLDDSDIEARLNSWNLGIENPRYLRQKPIPVSLMTPKFSLRKSSSFHDDHFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGRR", "sequence_length": 955, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "96e0febc3c86a2d1cda18183f8cf81f2dcf414f37d1cc2a1a83fbf0721ed29cf", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N8E3.json", "taxon_id": "9606", "uniprot_accession": "Q8N8E3", "uniprot_release": "2026_03" } ], "pfam_id": "PF14846", "short_name": "DUF4485", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydomonas reinhardtii", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap54-n-pf14858.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14858", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap54-n-pf14858.yaml" } ], "pfam_ids": [ "PF14858" ], "protein_name": "Cilia- and flagella-associated protein 54", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASEVIALCHSFEQELAKSLNVLPPVSASKPDAHDAHLNHHRLSQRIAESVSYYAGRLPAYASVPRILVFGDKLFRAEQYQLALQACYKHIRGLELHSSRENLPRMDAQARLSSHVQACFGCAACEAALLLASDGSVKHPDTLQWLVSCLAQLRAAMSLALPDERLYWLVLNGTVHVYGIAKAMITAGFAEQALPALVFCIKALEGHVAFAAPKYLPWRTQLYTWAVYGLADCGAVEQARALLADGLKRLEMLVALQKLDPVPAAPAVQAAFAAARGALVGLQLRVEMAAGAAVTPVLAQLSAGAAGAGAVGAAGPTARAGLAALVEALHVPHRRVVRTEAVSGGPLKELFDAAMAVAAPLIGDLKKATEAAAAADAAAAAAAVAADAASAEAETAGGADAAAPADTGAQQQASAAAAAADEAAVAASAALGAAQEALPCALHKGLLCAAYNLEQWKQFEELASLATSRSDVVYADAVPTGTGSTTTTAAAAADVDQTAAQLGTAASILTALRQLSTAPGVESLRTLAAMLQQALSRGITVSGTAGAAPPPPPRRVSMTGMLAGGSASPPNGSSGAGGAAATLTATAAGITQTAGSPSHNGGAAGATASAGGGAAGAPPRPQQSSLAPWQQLRDLIADASLALYGSARPLIDGVFCADDKEAGLVAELLAACHSAWAAVELDDGELRVAAALKLALLLEEEGRLLAAREVLMQAKSVVEQSRVELMVANRRAPDEHLRWVTASRSQPSDDTAALVQGMTASEQELACLQVDVLALLARVELGLGVSEQQGRATARRTAVMEEQAKRTAQSSIFGQRNAAELARDEARLVAAGATPPNPQMKERELLTACAKNPYERAVVLMQMTSFQGADAGRKTQLLQEAGDLLVKAQAAEDGLFAAQQPDLRARRDVPPQPKLLQRSPTSVTLVAHPPGPGLKQPPGARKPPSRYVAYCKSFGAGVGLSINKTATEYPGSGVSVPLGQPVTIQVALPCTLPQLRAPFLEEQVARLKSARLLVLGMEVAALLPDEPLMQEGALRTYGLLAPLLALRAPRSHLLHKALAACHAVLASLTNLVQDSLYRQEHQRSLAARVAAAVTYQLLRLSDEAGEVGAAAHFGRLQLELLKAYDPRFALAGRPALLPGAELQEEASQLHDVLLQHPKLSEWAPEPLVERQKDASDLVARVLPVLGTPAPMDTWSQALGFETAAEHPRWVELVVRMVEAAVRKGNPGNATVVAEQLTWWVRARLRRPPPPPLDAYEAEAAEAAAAGGTAPPWPAKWKLEEAAAALDAATVAASFEPPPVPSTEGMSPEEASAALARHAAVAAAAEATARQRLAAVLLLQKRMPALLARKRLIEKMRENRKRWSPWMARLNLVLGLQAAADARRYAANAPARARAAAAAAEAAAAAADAPGPETSGVAGSRPGTAAVNMPPPVPDPSAAGPPPLTPPEGITPPLQAMMHFARAAHLAARGGAWVEVGNAARHAWNLARATLSADPALTAPLPPVRWERGDAPQPAVAPESILVPAGAGDAGGKKGSKKGGKDDKKKDDKAPAKTPSSPKGGARSSARSKKGFPVEEAPPPPRTYPVVVGARPNMQRAARSLADAVLELVSALRDGLQVYTWVAPVNPRHRFDGPPPRRAALAASASTAGAGLGEEERPVTARVTDSEFSYGSDLQADIWFKEGPLDLAWVSRFLGLAAVVLSRGERWHALVEAGRQWARLSEGAFNERIMPWLLQAAPKAGVDPAPFQSAMDALIRDKNQALDQLDKVRTLVRERLGDTPLMAQSMGHKVRKRKTRAAILAAGPGSGAGGGGGSGLPDSDRASLVSAAYTYRTASTYKTKASQPDFLRIPGEYEKVIEVLKRRNEKGAMLLALHELGDVHAHFGNWGGAATSWNDTLDTLLGPYQALRNWRGRLDGMSPAGTLQAYGLHGLLLGCVLAGKLARYVHHDHLHLRLEAHRLTARLAFCAFSAHLGHPQRRAGFATYTPRELWAAGTDAWLVWSDPYRCPVVDLAGALEGAAAALLDAGLALEALPVLALWEHVTRHVLRNLHGTVLCRLLRVRALVALGLLAEAVEVTGGLMGAAALPDPTLDSDYVLKDTSGAVVEPVPAPPYDNSKLPGEPGNKAALTHIADTPLAPAVEKLYGSWLVAHLALARAQVLMLAGSVPNQWRGVDWRTGERTAAPKPASPAKGAAKGAAAAAPEPPGAGLPEPVEPVMLERAHVLLRKALAMASGEDQPPSEEPSSAGKPAAAGKPAPARAPSPGRAKSPTGKGKGKGGAGDGAGSAAAAPPEVPGPPPPPPPSASQRAEVNVRALLLMSELEQLRWMPSRGLAHALEAARFLGEHADHVNTPQQTDNDELERYTLAPALWFLARGAAVRCAAALGHAAHVHELVAAATSAHAPSEPGSAKVPSGLPELLHCTGMAHVAALTLAAEGRTSDALAALAAVAARYRSLCVYDGRLAAVLLDAAALRDRLGLREDAAELTAQGLAVAEGYCLELGLGEALEAPELTNVYLDGTALYAHALGAAAVHASRRQQHAEAERCAARAVLLLRSHTRALPATHAAALLLLGRTCRMVALCGDGVPVDGQPTLASGAPPASTATLTSAGAGAPGDPAATAVAAGTARAAAGGFNASAGALARTATAGRGGGSAGSSGGGVAATAAKLSAARSALCASITLAAVDGGHLRSLMRGALLELGSIFIAGLDARSAAACLRAGHAAAAKADLVALSSHTLAPVAAAQLPDWALAHVRGQEALFGKKSSNGAISGAAGAAGSARPVATSSSGARPPGTPPGGKPGAGGGSGDGLSDADAARMVFCLLGGLLKGLEALPVGGGARARGEAQVAALHAALRAACAKYGTDACFAEPPLPPSPPDAVPPPPEGSVIVQWHCQDGCWQEARSWRAEGSSGAPDGPLSDSALLALQPVPAYASLLFVVAAPSHDGSPGPHCGEVTFAVKDVRELQRRAKALRARVEAPKAATDILGYAAPSQVELGELLRAAERLLSAVPRNSEDGSSSAGFSAADSGLGGFGSSELMEGEVRPELDVAFLCKLEALLALEAGLDVNDKTLGSWLVQTLPVMM", "sequence_length": 3081, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2b5b3e7a9b819b67bdbfcf4616afebc324f44b0d8592efe11e70bed9c36fc4d3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8J666.json", "taxon_id": "3055", "uniprot_accession": "A8J666", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap54-n-pf14858.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14858", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap54-n-pf14858.yaml" } ], "pfam_ids": [ "PF14858" ], "protein_name": "Cilia- and flagella-associated protein 54", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASSRSSSSSSEESPDSETSVSPVHLPPTPPPTSTAVLKSPSESKSSSTDPPQCTHSEDSLPSAAFYGPLDSKNPLLASCEKEIRELLGFMKKKKALATSMEQKYEFHRRCATTLFNIWTKYAPRLPSNYYNEKLLKVGDSLCQIKEYKLALLQCYGRYLQEFIADFDEHKEDVNHFKTVFFPKGFGDETARLTFHALSGKNICNYQLVCESDANLQNEESVRQCLHILSSFRLIMQVALPQEHLCWIIFNGTLYIYTICRKLMVIGQSSKALEFLLWASMCMESSVPLLSIRYLTWRATLYTAVCQCHYDCQDGIHGEAFARRALAKIDELRQLELMSSSSSLETSRKYYREATIKMAVMIFKRGVFESRRKNKNVLRPKLRLNLKEAQSLPWPRTVTERLLDELLDSTSSRFLAVLEALSDSNRRILQTGPLVTDEMELRDVVSELFMAGKELLILSNVRSNGKLDFPQTSLLEHVVEKRNALSVGASVRFAKLAFTYEEWGLFESLAGQLIHFLQKQDNPQSKKAEKDLILLLAVEPLINVKRNRGLIFPLETDKETQSIENYLKHIACHESCMRTTFTEDTFSLAAILHFCVCVPTQGVLPDKDIVVDIIGLLWQRCKLGIQRLNIPKNDFAKYSHKISTNKWVYLLWQISEVIHCYKLEDLDIVMVAEITLRLSEILESLGSPKRKFKKSADLSAKKGPDELPGTSKGVPEILPILKRAPVEQLFYAYELLDKAIIGMSWKCMLTTLSDGSSVIDHCYVKDSQDVDGDTYKPIASNSYTMDLHLELIQAQHRIAVVLLDQLEVLQAPTVSTNTPAKGWEKVKKPRSTECFTELTVMKKIKKNKLSKAIYLMQKALLLFEKDAVCETSRNLLMEANALIEKVEAEQNALYSYQKFLGSSKIKKSRIPPPPILLARTHCSVTLKPAPFISEVKASWYCILGCKADGSYGKVRLNNNHLPNSGEAIPADGRSFFEIKGLETNAQYCFAIAAYSSSGKLIGDAIGETTKPILIYPPLSAVTARMYLTQVAYQIGNYEMAKKVFSPVWDYFVASPLPDEQSVICLSNIMTITQKRLHSNILADTSSILLYLFLRNIFVMSDIKIKEENLFCDNIKGNEIFPAQQVARLVECENVLVALELSNFLNDANFALQAVTQCYGLLAPIIYHNIVLVPVIQILIKCIVVLQGIPSIIHSKKNISSFESIQHMIACCIFYMTKILRSWKEYDLAIMLINYGKKMLDITSGCRSLFGIEQEETAEEGVCSKKTSRTKKPQQVLLPEKINEQLALLETHLLKTTKQINSAELSGSEDPIFLYPIVLNWTVKGAMKEVMKFKQRPRFLEFFTQIMLKCMNDEKFHLMVEISAPVYDFLKRRNESLIGVKRIKYKETVISRRALKSPSKFKAIVIEIGKSSDLTRRRRKKKKTLKDFFYKNPSIFDMAELDRNKRTDVRKMAYRSLSDNLNPLILTYVRRKRFHQILLEELPWRAQMNLYLANAHFHLFLQKLTERTKERLGSSYSSVSFRSCDPNLFSLFHSGTVLPTAKLTVDSYNAMMDALTVSKKKKHNQTTDTEDLSVLFNSKSDDNIPKMKTQTIYESDSQLGIGVNVREKDRTLVWGLDHFMKIFLCCRRAMVLAYRGGYWTLLQNCCRVFWNFSRELQILLKQTVASCKTFPVSQDNFLCICVLPFYLGAELLIDMLIKLQSTNSIKPFEERGEFSIPSCYGNIKSDNGGSSLIFEHPLDDVNVVDLRWIHDFVLKSLEVLYQVEKWETLVSLAIQFNIISHERYTEQVTPLLVYAQRQLVQRIKELNGPELSRQACARYEAENGEKITCRNFIGKRLKIDSSTPKNLAELQGSSEPLKTLITSEQRLAKQLVSVPLDVNDTLRCFRETLEKSKYHNRSVRHSRKLLSLFLAQTQDVLQTSNQRSLKVQSLHSLGSLLLFADKKRAAFKCWSQALDDIFRKPDVLHNWKEFGTSLPGAPSSSSPPGFKDYSEEFLSKFGIWGCLQAAMITAKIAQFIKTANVKKRINCCILSALLFQSLLRTTLPHPKAERNYAQYEITQLLPGIELFSDKFRADICSVIASLYYVIRELHYAKYNLIVLPLLALYQYFVSVICQDIVRNLEARILKIEILIDLGFFSEAFYELFQIYHGKNMPCAIPAGYKATMKVKITQSFDSGKPLTHKDNMQALEELINRGLPHILVNLGYQHLLNKFNFAKSHFFISLAATINCIPDPSPKIMYYQFITERSKPTPQNLKDNENSHGQFLRLRDDYNLNTIKSILLMEAEEKVNSLLSETEHQCHRPLYLSSVLELEIMVEARLHLAAIALQRYRPAYSTAILYSTLKLLQDSKVFKKKVPEESCSPTSPETSTTESKDDSEFLDPISLNSREYFNIHLWLRCRLMLVTSFIAQIRGIGIMKESELTDCLSLIDEVCTEAKSADDTEVLAEFLMQAVVLGLQEKHFKADIIQKLKEIISLLEGSEFLSPRSWLTLAKSLILMDDLTKAEKFKKASSKENKLIFLNQAHRILIAQMLTFGETIEFPLSDSDYASPLQPLKNIYLPHVMLLAKVKLRIGHTMAKQVCSSSKKKDISKWLPVLHMFDMALKVCKATAAEEYEVEAEILFQKGRIERQMLMEEKTSIAHIESFFEAIQISLKNDQNSGLIRDSYLEIALVYFYLKKPKRKASATTLKPLPRRHSSVKDPVATQTEMYSSLAWIAIRAAAQVSESVLGINLLIGKKRAMIDKVNNITLPNIPEFATVDLLSSYTDYLLENYQVVFQTSNSLMCENDDVYDCIDGRKRNLSKVDVTWILLIRYYIHLQRINNMSKLLASATPVSGISLPDDTLLTSLYNSELILRQKEMHLFLKRFLQLYSSSCIDGFPRELLQGLENISLEKVLFESSGKVHRDSSLQSDLSGKLTVCPSYTEISSEMAVQALNKELCFQWYIPPLDKPLKDSEPMVLLLYAYNLKPLRILDIKVSTGNSLYVGTSWIPLRSVIAVHQKLSNLAQIAEISLPSVPEVTSEENIYETIEPEDKPIDTDLENMILECCSEIEALFSNNKDKDNEPPPPMTKVPFDVSLPAIFSLERLFDLANGCIVSVGSLFNWMVSIIQ", "sequence_length": 3106, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0afeeae6b093d3dc7515c42d88ea1eade59e21f6df7d8f48e38282b3b67dc916", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C6S9.json", "taxon_id": "10090", "uniprot_accession": "Q8C6S9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap54-n-pf14858.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14858", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap54-n-pf14858.yaml" } ], "pfam_ids": [ "PF14858" ], "protein_name": "Cilia- and flagella-associated protein 54", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAQGSPSSSPSDDSTTSGSLPELPPTSTATSRSPPESKGSSRSSLLQWTCPEDSLPLAVFYGPLDAKNPLLASCEKEIQELLGFMRKKKALATTEEEKHEFRRRCATSLFNIWTKYAPRLPADYYNEKLLKVGDSLCQMKEYKLALLQCYGRYLQQFNTNFDENKVDVTQFKATFFPKGFKDKTAGLTFHALSGKNMCNYQLVCDSDENLKNKESVVQCLHILSSLRLIMQVALPQEHLCWIIFNGTIYIYTICRKLMVIGQSSKALEYLLWASMCMESLVPLLSLRYLTWRATLYTAVCQCCYDCHAGIHGEAFARRALAKIDELRQLELMSSSKSQEESRRYFREATMKMAVMIFKRGVFESRRKNKAVFRPKIRINLREVQTLSWPRTVTERLLDEMFDSTASQFLAVLEALSDSNRRILQTGPIVTDEVEIHDVVSELFMAGKELLIMSNIGADGMLDFPKTSLLELMIGRKDVISVDAAVKFIKLAFTYEEWSLFESSAVHLIYFLQRQDDPESKKAEKDLTLLIAMEPLINVKRNKGLIFPLENYKEGQSTQIYLKKIAVHDTCLKTCGYSEDIFHLAATLYVCVCTAPQDVQPDKEIVVDTIMFLWQKCKLGIQRLNISRNDYAKFTQKISTNKWIYLLWQINEVIHCYKMEDIDIVVVAEVTLRLSEILESLGSPGRKFKQSLDVPLREGTNKFPGAPKGITEILPILQKNPVEQLLFAYKLLDRAIGGINLNCMLTSLPNGSSVIDHCYAKRTHHIDGDTYKPLASNSFMMDLHLELIQAQHRIAVVLLDKLQVLQTPTVSKDISTKGPEKLKQSGSTDCFTELNIMNKIKKNTLSKAIYLMQKALLIFEKDATSTSSWELLMEAYSLIQRIEAEQNALYSYQKYLESSKRKKSRVPPPPILLSRTHCSVTLKPAPFTSEVKVSWYCILGCKAEGSYGKVRLNNNHLPNSGEAIPADGKSVFEVKGLETNEKYVFAVAAYSNNGKLVGGAIGETTKPILVYPPLSTITARMFLTQVAYQVGNYELAKKVFSPVWDYFVASPLQDEQSVICLSNIITITQRRLHSDILAETSSILLYLFLRNIFVTSDIKIKEENLFCDNIKGNEIFPSQQIARLIECERVLVALELSNFLNDSSYALQAVTQCYGLLAPIIYHNIVLVPVVQILIKCIVVLQGLPSIVCSKKHTASFESIQHMIACCIFYITKILRSWREYDLAVMIINYGKKMLDITPGCKSLFDGSNEQEEMPEEDSSKKSLKTKKPQQILLPEKINEQLALLETHLLKLTKQYVTSELSGGEDPIFLYPVVLNWSVKGAVKEVMKFKQKPRFLEFFTQVMLKCMNEEKFHLMVEVTTPVHDFLKRRNESLLGLIKVKYKDSALNKKANKSLKFKAAVMEIGRSAEMQQRIRSKKKETLRDFIFKNPAISEMVAHERNRRTSVRKAAQRYLMDYLNPLILSYVKRKRFHRLSLEEMPWRAQMNLYLAGAHFNLVLQKLWECTKMKFGTSHMMVSFRSCDPNMFSLYNSGTVLPTRKLTVENYKAMLDFLLTAKKRKANLPSDAEEFSTFINSIMSDENMSKTQTVYDSDSQSGSSAKEKDRGANLCVMDHFMKIFLYCRRAMVLAHRGGYWTLLQNCCRALWNFTQELQILLKQAVDLDKTFPISQDGFLCTSVLPFYLGAELLIDMLIQLQNTSSIKPIEDKGEFSVPSCYGNIKNDNGGSSLTFEHPLDDVNVVDLKWIHDFVLKSLEVLYQVEKWETLVSLAIQFNTVSHERYTEQVTPLLVYAQRQLLLRIQKFKGPDITQQPCARYEAEYGEKITCRNFIGKQLKINSSTIEATSNCTDLLKMLISSEYSRAKALVCVPVDVTDTLRCFRETLEKSKYHNRSIRHSRKLLSLFLAQTQDVLQASNQRSLKVQALHSLGSLLIFAEKKRAAFKCWCQALDDIFRKPDVLHTWKEFGPSLTNVTNSHSPPGFKDYSEEFLSRVGIWGCLQGAVISAKIAQFIKSLNVEKKTDCCILSALLFQGLLRTTLPHPKAERCYAQYEITQLLPGIELFSDRYRADICSVIASLYYIIRELHFVRQNLIVLPLLALYQYFVSGICQDITRNLEARILKIEVLIDLRFFSEAFYEISQIFYGKNMPCPIPAGYKATGKMKIFQSFDSGKLLTSKENIQAIDELRNKGLPAVLVTIGQPHLLNKFNFVKAYFFLSVAATINCVPENKFKTVITNKSKPNLPNLEEIYSKDDGSSFYNLTKLKDEITLSMLKSMLLMEAEDRLNFLLSEVEQKTLSQCSAGELEIVVEARLQLAAVALQRHRAAYSAAIVFSTLTLLQDSKLFEKKVVQDDTENPVSPGTSVTENKDDSEFLDPISLNAREYFNIHLWLRCRLALVTAFVAQIHGIGIVKEDDMTDCLSLINEVCMEAKSAGDTELQAEFLTQAVILGLQEKHLKADIMTNLQDIIHLLEGNEFISPQSRLTLARSLVLLDDLTKAEKFKESPSSKTGKLNLLTRAHSILTEQMLAFGETIEFRSSNTKYANPLQPLKNIYLPHVMLLAKIKMRIGHTVAKQVYYKNKRKDPSKWLPALHLFDVALKLCRTTAVEEHEVEAEILFQKGKIERQILMEEKSPSFQLESLYEAIQLSLKNDQNSGLIRDSYLEMALLYFHLKKPKIKISGSPLTLKPPLRRSSSVKETSANKFEMYSSLAWIAIRAAAQVSEAVLAINLLIGKKNTRMHKVNQVALPNIPEFAALDLLSSYTDYLLDNYQVLFQTSCTFLYQNDDVCDSADGRKKTQTKVDITWILLLRYYIHLQRINNLSKLLASATPVSGISLPDDTLLTSLYNSELILRQKEVHFFLKKFLQLYSSSCIDEFPKELLCQLENPPLSEKDLRESSAKLYRDSSVQSILSFKPVSGSSCVDITPIEMVTQASNKELCFQWYIPPLDRPPKETEPMVLLLYAYNLKPLKISDVRHSTYNSTCVGSLWIPLNRVIAIHEKLSNLAQIAELSLPAAPEITSNENIYEVEVEEESVDNEMEDMIIQCCSEIASLFLNDKEPTPLSEVPFDISLPSIFNLERLFDLANGCILSGGSLFNWIVSIIP", "sequence_length": 3096, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9ab3033cf6e8b3e3c8e7b23d9b1cba5a69ba3ce922c9258047688fc2ea1737c2", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q96N23.json", "taxon_id": "9606", "uniprot_accession": "Q96N23", "uniprot_release": "2026_03" } ], "pfam_id": "PF14858", "short_name": "CFAP54_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4487-pf14868.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14868", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4487-pf14868.yaml" } ], "pfam_ids": [ "PF14868" ], "protein_name": "FIGNL1-interacting regulator of recombination and mitosis", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQDDAEVASGVVLEELSSWSEEMCRRELPSVLPRLLSMYQCSESWIEHIRILKIIVEMFLPHMNHLTLEETLFSQVLPKSIKLFDGMICELTSEARELSSQNLEIQVTIRNILQAMVQVIGGFTGCVRHVCATQKSVFLGSIQSLPSFILHIIKSAFVHCKNSECVYSGRLHLVSDLLQVLFKEAYSLQKQLMGLLDTVCLDPSVDENNALIMVGVIHSLLDICSVISGMDQAFHANTWKFIIKQSLKHHSVIKSQLRHKEIISSLCEDILFSFHSCLQLAEQITQPAAQGNADYRLFQKTLKLCRFFANSLLHYTKECLPFLSDSCCTLHQLYLQIHSKFLSLCAAKTSKAQQEEIASTFLVLLDPLISQLLKSQPFVQAVLASKLALPCELQLPQVLLLVVAMDKLPSQPQDVQTLWSTEDMTRMSILKGIFYNFGQCSGELSLPTHLQGTKGKGQAEVPVTLYQHVCVHLCAFVASFHSSLFPRLDAALLNAVLSTNMSTSLLAMDVWCFLARYGTAKLGAHHVTLVAHLVKSCPGKCVQLTNLSILLKRLLFFMAAPHQVQFIQKFSPKEADNLHLWQYISLQAFDADLRKPVACELVRVCRAQCRKWLSSTRTLAELDSLNTALSVVLTVCNSAGEALDSRQLTAVTEVLGELWTFINVEQIISQPYVQQAFSLLLQLLAFFIQTVDLQLISQVVNVLTSVIKLEPPDHVSLAVLDFISSLGKLYISQTIRDKVLPSLSCILTSLIVNKNWLLEQHTLEAFTQFAEGTKHEEIVPQCLGSEEIKNKVVSFLEKTESVDEAEVATVDNVKQEKGTFWEPAAKVTVEEVKTSAFQPHTKRARRVLPFEEEYRSVFKAAARALETTEFLLKHSLAPAWLLPELEALQGRIEKLKRCVLTG", "sequence_length": 903, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f12ed637f5f33025d9e5f2b34a9c7b09234933575a1a04404898a9a856e2dba0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3TQQ9.json", "taxon_id": "10090", "uniprot_accession": "Q3TQQ9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4487-pf14868.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14868", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4487-pf14868.yaml" } ], "pfam_ids": [ "PF14868" ], "protein_name": "FIGNL1-interacting regulator of recombination and mitosis", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQNGAVATNGVMLEELSSWPEEICRRELPSVLPRLLSMYQCSESWIEHIRILKIIVEMFLPHMNHLTLEETLFSQILPKTIQLFDGMICELTSEARELSSQNLEIQITIRNILQTMVQIIGSLTGCVHHVCATQESIILGNIHSLPSFILHIIKSTFVHCKNSESVYSGRLHLVSDLLQTLFKEAYSLQKQLMELLDMVCLGPSEDENSILTMVEVIHSLMDICSVISSMDKAFHANTWKFIIKQSLKHQSVIRSQLKHKEIISSLCEDILFSFHSCLQLAEQTTEPAAQDNADYRLFQKTLKLCRFFANSLLHYTKEFLPFLPDSCRTLHQLYLQIYSKFPPCLYTAKISKVQQEEIAGTFLVVLDPLLSQLLKSQSFVQTVLASKLDLPHELQLPQVLLLVVVVDKLPSQPEDVQTLWCTEDMTRMSILKAIFYNFGQFSGELSLPAHLQGVKGKGQAEVPVTLYQRICVHLCTFVASLHPTLFPELDAALLNAVLSTNMSTSLLAMDVWCFLARYGTAELGAHHVTLVAHLIKSCPGRCVQLTNLSVLLRRLFFFMAPAHQVEFIQKFSPREADNLHLWQYISFQALPADLRKQVTCEVTGVCTAQCRKWLSGSHTLAELDSLNTALSVLLTVCNSAGEALDSRQLTAVTEVVGQLWAFINVEQIISQPHVQQAFSLLLQLLAFFIQTVDLQLISQVVNVLTLVIKLEPPDHVSLAVLDFLSSLGKLYISQTLRDKVLPSLSCIVASLMVNRNWLLEQHTLEAFTQFAEGTKHEEIVSQCLGSEEIKNKVVSFLEKTESVGETEAATADNSGEQKTDTFWEPVAKVTLEEAKGSAFQPCTKRARQELLLEEEYRSAFQTATRALETTEALLKHSRAPAWLLSELGALQERIEKLKCCVLRG", "sequence_length": 905, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea9d667c6e1421aa63832488ec9bc9fdad7f9de0bb7563b03baec3f924a82612", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5XI94.json", "taxon_id": "10116", "uniprot_accession": "Q5XI94", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4487-pf14868.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14868", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4487-pf14868.yaml" } ], "pfam_ids": [ "PF14868" ], "protein_name": "FIGNL1-interacting regulator of recombination and mitosis", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFLPHMNHLTLEQTFFSQVLPKTVKLFDDMMYELTSQARGLSSQNLEIQTTLRNILQTMVQLLGALTGCVQHICATQESIILENIQSLPSSVLHIIKSTFVHCKNSESVYSGCLHLVSDLLQALFKEAYSLQKQLMELLDMVCMDPLVDDNDDILNMVIVIHSLLDICSVISSMDHAFHANTWKFIIKQSLKHQSIIKSQLKHKDIITSLCEDILFSFHSCLQLAEQMTQSDAQDNADYRLFQKTLKLCRFFANSLLHYAKEFLPFLSDSCCTLHQLYLQIHSKFPPSLYATRISKAHQEEIAGAFLVTLDPLISQLLTFQPFMQVVLDSKLDLPCELQFPQCLLLVVVMDKLPSQPKEVQTLWCTDSQVSETTTRISLLKAVFYSFEQCSGELSLPVHLQGLKSKGKAEVAVTLYQHVCVHLCTFITSFHPSLFAELDAALLNAVLSANMITSLLAMDAWCFLARYGTAELCAHHVTIVAHLIKSCPGECYQLINLSILLKRLFFFMAPPHQLEFIQKFSPKEAENLPLWQHISFQALPPELREQTVHEVTTVGTAECRKWLSRSRTLGELESLNTVLSALLAVCNSAGEALDTGKQTAIIEVVSQLWAFLNIKQVADQPYVQQTFSLLLPLLGFFIQTLDPKLILQAVTLQTSLLKLELPDYVRLAMLDFVSSLGKLFIPEAIQDRILPNLSCMFALLLADRSWLLEQHTLEAFTQFAEGTNHEEIVPQCLSSEETKNKVVSFLEKTGFVDETEAAKVERVKQEKGIFWEPFANVTVEEAKRSSLQPYAKRARQEFPWEEEYRSALHTIAGALEATESLLQKGPAPAWLSMEMEALQERMDKLKRYIHTLG", "sequence_length": 853, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "56b28b89526a7a51cd51d9b8ef34d4bcb5dd054da0c4a226b19e0ccb563eecfb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NSG2.json", "taxon_id": "9606", "uniprot_accession": "Q9NSG2", "uniprot_release": "2026_03" } ], "pfam_id": "PF14868", "short_name": "DUF4487", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14869", "short_name": "DUF4488", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14879", "short_name": "DUF4489", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pirc1-2-pf14892.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14892", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pirc1-2-pf14892.yaml" } ], "pfam_ids": [ "PF14892" ], "protein_name": "Piercer of microtubule wall 2 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDRNRDKKSTSPSNSDTEMKSEQLPPCVNPGNPVFSCMLDPKTLQTATSLSKPQMIMYKTNSSHYGEFLPIPQFFPCNYTPKEQVFSSHIRATGFYQNNTLNTAPDRTRTLDFPNIQHTL", "sequence_length": 121, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8bf9470d52c3c8bc4337cc27a425729ac685c534ce42ce3181020607fe05d34b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/H3BRN8.json", "taxon_id": "9606", "uniprot_accession": "H3BRN8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cellular-response-to-uv-c-go0071494.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071494", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cellular-response-to-uv-c-go0071494.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/establishment-of-left-right-asymmetry-go0061966.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061966", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/establishment-of-left-right-asymmetry-go0061966.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pirc1-2-pf14892.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14892", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pirc1-2-pf14892.yaml" } ], "pfam_ids": [ "PF14892" ], "protein_name": "Piercer of microtubule wall 1 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEEKPQQSAEEPEPGEPKAKPAPEEPEPGEPKAKPAPEEPEPGEPKAKPAPEKTSDYYRISEKLPVRFNNPGWFHGYGTKEAVSMYRTSNQTYGSRAPTVHEMPKVFYPSSNKFSRQHAAFGMFQSHNINVTLEKSLVTGPDNHITHYDRLNFHPSYNVNRPSICD", "sequence_length": 167, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d336da9178f100c036e311dc6944307aa4c74a1168317d11cb44d9385787433a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5BN45.json", "taxon_id": "10090", "uniprot_accession": "Q5BN45", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/establishment-of-left-right-asymmetry-go0061966.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061966", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/establishment-of-left-right-asymmetry-go0061966.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pirc1-2-pf14892.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14892", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pirc1-2-pf14892.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5BN46", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF14892" ], "protein_name": "Piercer of microtubule wall 1 protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4c3c4e77e7255b9ee9283c5fb4b4b342936ceb48e1c638c160af7e40211ba3a1", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAEECPRACAEPVAPKATAPPERTSDYYRVSADLPGRFNNPGWFRGYRTQKAVSVYRTSNQAYGSRAPTVHEMPKVFYPNSNKFSQQLAAGGMFRNNTLNVYLEKSIVTGPDNCITSCDRLNFHPSYNINRPSICD", "sequence_length": 136, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4c3c4e77e7255b9ee9283c5fb4b4b342936ceb48e1c638c160af7e40211ba3a1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5BN46.json", "taxon_id": "9606", "uniprot_accession": "Q5BN46", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pirc1-2-pf14892.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14892", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pirc1-2-pf14892.yaml" } ], "pfam_ids": [ "PF14892" ], "protein_name": "Piercer of microtubule wall 2 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARETDCDLDKKTSLTSDAEMRPEPPALCVNPGNPVFSCMLDPKTLHTATSLSKAQMIMYKTSASQYGAFSPRPFFFPCKFLPQEQAFTEHLKTTGFYQNNSLNVGPDRTRTIDSPNYQHTL", "sequence_length": 122, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c7f3f678120f56f16aa10f82969d32ddbb70708c243bae9209145416917c1d55", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/V9GXK1.json", "taxon_id": "10090", "uniprot_accession": "V9GXK1", "uniprot_release": "2026_03" } ], "pfam_id": "PF14892", "short_name": "PIRC1_2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14898", "short_name": "DUF4491", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14899", "short_name": "DUF4492", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14900", "short_name": "DUF4493", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF14902", "short_name": "DUF4494", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4495-pf14906.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14906", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4495-pf14906.yaml" } ], "pfam_ids": [ "PF14906" ], "protein_name": "Uncharacterized protein KIAA0825 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDALQEYSHNSFDLQCLLNSFPGDLEFKQIFSDIGEQMEQNAASIEHCIEEIQSEVNKLCPDAQLQTTSDCFKWLTSYNYNLSKSPSISHGDLINFLKTMKDLLNNEDNHEEMILDLLWDLSCQSSISFLSSLGGTTFCHLSRTSIHSVEDFSSVDVKSVWDDVRLHLRRFLVNRLERYNEINNSQQKIELKSQCMKQFLLLYSESEVLVKYQSIQKRLLDTFLQDSFPSCNRESDLERIVCGYQSTMLMLYSMIKEDFNVLCEILAPSSLVQFFNETYLDTVTEEMTKILEYFCELQFKENAVPVVKTSKSCNKRRGAVHALVSPECSQKERRPSLSLEELRFLSQLTESFVKLENSIQELFAETLSLLQMPRSSPGILEKSKKEVMVEKLIANENNKPPEALLPVKEATLLEFGWRNAFKEVPLAIAHCISAAIEGFSTQVLQQEQTERTSSVSYTINLVNVPQLCPEGHIFPEEEQPKRVAKFCSDIIEKLDTMLLLALACRDDSPQEIKENLVEAYSKVATAVLERLQERGKEVPSRAPLKNLHSILSSATYVSQRFTHYDNLMKETTKKPIFLVPVQRYQEFINTVQFQVTDYCARVCAMSILQDAESHHWDDYKAFYEGERCSFAIQMWHYFSLALHHDLWTILPPKLAQEILAEMLEKSLGLLASRYARAHPSPKRTAQIRLDVMAILIFTENMLWSICSSGQEILNPHKFNNHKIFKIHTHCNNLFTTLAILTSPLTELYKTFQHGVDESPSNSLTPLFNQPLHWISCMSQFYPSLLRPPSVGGLTAQGQLKLLLSQPCCKWNLLLDTLLHSGGLIPRILLKSSKQAAGMESKQSAGGSLVGAIFEVLYHCHLSSQTFGNVFMSHMEEEQLWDFLFNIPVSSFTESQPEVIHCLRLALMDSVKDTVQQIISIMRCRRNSETNLNKPRVPDHLLQSIPQGWNYIPRDSRGKESNKGITELAAQAVSIVLSKLPTVIACLPPTIKYFFFLSERKMSKNLAELKKAGLLVWNLIIIICRIFEDGNTVERLTGSSLDRWSKEKLGLICLCLESILGKQSNPSQLTQKVILSIERQKPNWMEQQLLKARTLSIQCAFTRMEENSGSEGEAALELTEQKTNAMVLDLCHKPGGSKYLQQIYHIMQLNEEYLKEQLFAMNGSEEKPLLIRPLKVALRDEDQPPAFNPFHVHKVVSESMLDQVATVTWCCDWSNLLPNYLGLNKMTFGALFKNRWEMRKDETLEEKEKMMLEHLKQNCTIQDFSTSDSKTEQ", "sequence_length": 1272, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8d9b936450346801cd4569d95717094997009a7b1aee17686dae4c4307f17e04", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UPC7.json", "taxon_id": "10090", "uniprot_accession": "Q3UPC7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4495-pf14906.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14906", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4495-pf14906.yaml" } ], "pfam_ids": [ "PF14906" ], "protein_name": "Uncharacterized protein KIAA0825", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDWDDEYSHNSFDLHCLLNSFPGDLEFEQIFSDIDEKIEQNAASIKHCIKEIQSEINKQCPGVQLQTTTDCFEWLTNYNYSTSESSFISHGDLIKFFKTLQDLLKNEQNQEEMTLDLLWDLSCHSSVSFPSTLSGTSFHFLSRTSLHSVEDNSSMDVKSMWDDIRLHLRRFLVSKLQSHNEINNSQQKILLKKQCLQQLLFLYPESEVIIKYQNIQNKLLANLLWNCFPSYNRDSNLDVIAHGYQSTMLKLYSVIKEDFNTLCEILAPSSMVKFIKETYLDTVTEEMAKFLENFCELQFRENAVRVVKTSKSSSKHRGAVHALVTTECPQKGRNFSLPLDKVEFLSQLIKSFMKLEKGVQELFDEILLSLKITRDTSGILEKSDREVVMEKPRANETNIPSEQSLPGKEATLLDFGWRSAFKEVSLPMAHCVVTAIEGFSTKILQQEQNERSSAVSYAMNLVNVQQVWQDSHMFPEEEQPKKIGKFCSDIMEKLDTMLPLALACRDDSFQEIRANLVEACCKVATAVLQRLQERAKEVPSKAPLKNLHTYLSTAVYVFQHFKRYDNLMKEMTKKPIFLVLVQRYQEFINTLQFQVTNYCVRVCATSILQDAESHHWDDYKAFYEGERCSFSIQMWHYFCWSLHYDLWTILPPKLAQEILVEVLEKSLSLLASRYARAHPSRKRTPQLRLDVTTILICTENMLWSVCTSVQKLLNPHQHTDDKIFKIHTHCNNLFTTLVILTSPLTELYKTFQHGLDESASDSLKSFFKQPLYWVSCISHFYPSLLRTPSAGGLKAEGQLKLLLSQPRCNWNLLLETLLHHDGLLLRILLKSSKQVSDTENNLNQGPSLMEAIFKILYHCSFSPQTFANVFVSYMEEEQLWDFLYNIPVSTCVEYELEVIRCLRLALTDAIKDTVQQIVSVMSSRRNCETNLNKHIVPDCLLESMPKEWNYSPKETNRKESCKSFTRLTAQAVSIVISKLPTVIACLPPPVKYFFFLSERKMSKKFVELKKAGLLVWNLIVIICRIFEDGNTVELLTGASLDRWSKEKLGLICMCLKSIMGDQTSIHNQMIQKVIQSIEQQKPNWIERQLLKARKLSTECAFMTIEKSTALQEGDVALELTEQKINTMVLDLCHKPGGREYLRQIYHIMQLNEEYLKEQLFSMNSSEEKPLPIRPLKTTLRSIEDQPSAFNPFHVYKAFSENMLDQSAITKWNWNWAKLLPNYLRLDKMTFSVLLKNRWEMKKDETLEEEEKAILEHLKQICTPQNSSASDNIEEQ", "sequence_length": 1275, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7078463b64946bd23e206f66ea92fd11ce6e63123d5a974ebbfd6f4ee8c815ef", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IV33.json", "taxon_id": "9606", "uniprot_accession": "Q8IV33", "uniprot_release": "2026_03" } ], "pfam_id": "PF14906", "short_name": "DUF4495", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hu-ccdc81-euk-1-pf14908.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14908", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hu-ccdc81-euk-1-pf14908.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hu-ccdc81-euk-2-pf18289.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18289", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hu-ccdc81-euk-2-pf18289.yaml" } ], "pfam_ids": [ "PF14908", "PF18289" ], "protein_name": "Coiled-coil domain-containing protein 81", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDRIGPGFQDLCRQVLPTLPSLSQEEVSTIWGNVSDFVERQLTMHKGVQISGLGTFTFTRQQLEMGNKKFVLVQRPVFIMSEKLVQTHGLKQNKVFSPGDIPVVPLNFVMISLEGPFNRDTIEGCVRETLLFLSRSISIKQNVEFTFKGIGVLSIRDNKVKMRFYKDFLSSVDGSGTLTKALANRPGTMDSVLSSRESFGKRPNSALAFPRIEHKETENKPPVEVFGEEGGENRPRKSKLKDQSDKEEGAWEISSAKKHRDRQSISPAKVTSGSLLDKFERSGNGGKITENLSPGGQRNDNEKPKTSPAPACQDHNKAGQEMCYVCLQRAQRNFALYYGDEKRRREIEDERLMQQYQIAKDQEAFFKSQMKSMATREQNQKNAAYNLGVAEAIRSHKNEKPDFYKSFLFDKRPLSPEINAFKQEEYSQSLLKQMESKREKEIKQRQNRELMDRLEQVQLTEELAAQRAQYLKEKMEETQYYKRALDAQVKNKPSQLPMFEPDSAEPIFGKNEGEMEMEKRKREQSCMKHQMEAAANLKRNTILNQLVDQRRDLQMLQRTKREHLADRAAEVDRVNRLNQCLQEDWDRSLAMKKQRDLEEKAFERASDKLFLLDQCEKYRRCRQCQRRTSNTGESNVWPLNKFLQGSRLLV", "sequence_length": 651, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "97d36705dc34bea92c730c640e43c4a999dbfe58faa1724e4bc95ab9fcf69fa7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5XIN9.json", "taxon_id": "10116", "uniprot_accession": "Q5XIN9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccdc81-hu-domain-1-ipr028034.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028034", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccdc81-hu-domain-1-ipr028034.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccdc81-hu-domain-2-ipr040673.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040673", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccdc81-hu-domain-2-ipr040673.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hu-ccdc81-euk-1-pf14908.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14908", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hu-ccdc81-euk-1-pf14908.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hu-ccdc81-euk-2-pf18289.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18289", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hu-ccdc81-euk-2-pf18289.yaml" } ], "pfam_ids": [ "PF14908", "PF18289" ], "protein_name": "Coiled-coil domain-containing protein 81", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDTIARALQDLGRQVLPTLPSLSQEEVSIIWGNVSEFVRRQLTLHKGVQIPAFGTFTFIRQKLEVGNNKFILIQRPVFIMVEKLVQIHGLKQNKVYTPGEIPIVPLNFVMISLEGPFNRDVVEGCVKETLLFLSRSISMKQNVEFTFKGIGVLMIRDSKVKMRFYKDFLCTMDGSGALAKALANRPGTVDSVLSSREALRKWPSSVLAFPRIELKEMENKLPMETLVEECGENRERKCKLKDQSDKEEGTRDISSPKRLRDRQALFPAKVTNVSLLEKFERSESGGKIMTPESLSYPSCLKHDSEMKPQTSPACQDHNKAGQEMCYVCLQRAQRNSLLYYSEERRREIEDERLIQQYQMLKDQEALFRHQMKSLATREQNQKNAAYNLGVAEAIRNHKNEKPEFYKSFLFDKRPLSPALNALKQEEYSRSLLKQMDNRQENEIKQRQYRELMDRLEQVQLTEELAAQRAKFLKDKMEETQCYKRALDAQIKNKPSRLPPFEPDSSEPIFGKNEGELMVEKQKREQNYMKHQLEAAANHKRKAILHQLVDQRRDLQMLQRTQREHLADRTAELERVNRVNQCLQEDWERSAAMKKQRDLEDKAFERASDKLFLLDQCEKYRRCKQCQRRTSNVGESNLWPLNKFLPGSRLLV", "sequence_length": 652, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "166b1ecb9d897cd102482375e3d62540217f97ea77ef516169e306af31bc9ff3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZN84.json", "taxon_id": "9606", "uniprot_accession": "Q6ZN84", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccdc81-hu-domain-1-ipr028034.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028034", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccdc81-hu-domain-1-ipr028034.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ccdc81-hu-domain-2-ipr040673.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040673", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ccdc81-hu-domain-2-ipr040673.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hu-ccdc81-euk-1-pf14908.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14908", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hu-ccdc81-euk-1-pf14908.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hu-ccdc81-euk-2-pf18289.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18289", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hu-ccdc81-euk-2-pf18289.yaml" } ], "pfam_ids": [ "PF14908", "PF18289" ], "protein_name": "Coiled-coil domain-containing protein 81", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLDRVGPGFQDLCRQVLPTLPTLSQEEVSTIWANVSDFVERQLTMHKGVQISGLGTFTFSRQQLEVGNKKFVLVQRPVFIMAEKLVQTHGLKQNKVFSPGDIPVVPLNFVMISLEGPFNRDTIEGCVKETLLFLSRSISVKQKVEFTFKGIGVLSIRDSKVKMRFYKDFLCSMDGSGILTKALANRPGTMDSVLSSRESYRKRPNSAMAFPRIEHKETENKTPVEVVGEEGGENRPRKIKLKDQSDKEGGAREISSPKKHRERQSISPAKVTSVSLLDKFERSGNGGKITACENLSSPGCQRNDNERPRTSPAPACQDHNKAGQEMCYVCLQRAQRNFALHYGDERRRREIEDERLMQQYQILKDQEAFFKNQVKGMAAREQNQKNAAYNLGVAEAIRNHKNEKPEFYKSFLFDKRPLSPEINAFKQEEYSQSLLKQMESKREKEIKQRQNRELMDRLEQVQLTEELAAQRAQYLKEKMEETQHYKRALDAQVKNKPPQLPMFEPDSAEPIFGKNDGEREMEKRKREQSCMKHQMEAAASHKRNTILNQLVDQRRDLQMLQRTQREHMADRAAEMDRVNRLNQCLQEDWDRSLAMKKQRDVEEKAFERASDKLFLLDQCEKYRRCRQCQRRTCNTGESNLWPMNKFLQGSRLLV", "sequence_length": 654, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5ebb09e2d6d4f7e9b1896361c792057648211743d0b102978fbd4af8ea2f4431", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D5W4.json", "taxon_id": "10090", "uniprot_accession": "Q9D5W4", "uniprot_release": "2026_03" } ], "pfam_id": "PF14908", "short_name": "HU-CCDC81_euk_1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/map10-c-pf14925.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14925", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/map10-c-pf14925.yaml" } ], "pfam_ids": [ "PF14924", "PF14925" ], "protein_name": "Microtubule-associated protein 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAATAAERLFSLELLVDWVRLDSPCFASPAVAFRLLDFPPLLILPPAAPDPEPQRGAITFGRGKACLLRLRPAALRRPRLRAALLQLPAVPTPAPLLLGACDILLVPSVGQRGIFTLRGPEAERVGELALFYRLTDLGRFPPGAPQLRSPLSPACITGSEALEVSEPRTKETSKPCTKDTSARCLQCVSNGRFLEAPEPCAKDTDNWSAGDSDASAVQKSWEEAILHSKASSGDMASAPCSPAPSGRTVSPVSLEVTELDFETNTFCPPPLYYTHLTQEKAPSARVEITIEPQRNEPEDLEDAFPETKPVGPTIRPVKHTRAAIQESPPVLLNLPQMQGPGEANEAPCPPQTEQSTVGAIRQLPLLNALLMELSLLCNQPVANPSQVHPHLAWLYRGEHKGPDPSTKSTSRSESKSNKLSAQENEKLVSPQSTKNPKGKHSKISGSPPPKVTKGRLLYGLTNTLRLRLQQTNPGMLVVHEKREQYRRSQIRAVGPKFRIPSWKGKVSSLAAESQMPPQLPGDTLTDSNGKVSSWAVQSQLPPQLPRDRSLDSYGSFAEGSDTSMLISSGFDESSRTREAKQSHAMKKETVGQSENKTVTSLRAPVSPAVSVIPERSPRSNILRGKWKKQVQSPGLSRQDPAVDKAVGEGIDGKQVKAASAADTNENRPPSRKSSCESTSELQCWDGSTSPCYSEDFCTTENNSRSLPAPDSSTGAEYAQKGSWASKSSEARLSTRKNSSESSSVFTPPFSAGSPVCSQKRSRVLKTHDSLEEASSLSTSDFSSQWTNEKENQADPGSSKIRRRQDRSTKLKVGTGHKSSEKSHSARTSQVSSYEPSNLSELELKAIDDIDSASTGFQEEEDGLGSLRISRQCRDICELVINKLPGYTV", "sequence_length": 888, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c6f68a4830035575b3dff86151c317b1b4279fa86704d7a27d73097ce0f74df", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D3ZAP3.json", "taxon_id": "10116", "uniprot_accession": "D3ZAP3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/map10-c-pf14925.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14925", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/map10-c-pf14925.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/microtubule-associated-protein-10-c-terminal-ipr026679.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR026679", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/microtubule-associated-protein-10-c-terminal-ipr026679.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/map10-n-pf14924.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14924", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/map10-n-pf14924.yaml" } ], "pfam_ids": [ "PF14924", "PF14925" ], "protein_name": "Microtubule-associated protein 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATTAAGRLFSLELLVDWVRLETGLSPCAASPAVAFRLLDFPPLLVFPPAAPGPEPQRGAISFGRGKACLLRLHPAALRRPRLRAALLQLPVGPTSAPGLVGACDILLVPSLGQRGVFALRGPEAERVGELALFYRLTELGRFSPGVPQLRGPLSPACILDSEALEVSEPRTEETSKPCTKGISARCLQCVSNARLLEGSEPCAKDTNSWSAGDSDASVVQKSWEEAVLHSKASSGDMASAPCSPAPSGKTVSSVSQDVTELDFETNTFCPPPLYYTHLTQEKTPSARVEITIEPQRNEPEDLDDIFPETKLVSPPLRPVKHTRAAVQESPPVLPNLPQTQGPGEANEAPCPPQIEQSPVNAIRQLPLLNALLIELSLLCNQPVASPTQVHPHLAWLYRGEDKGPDPSTKSTSPSESKSNKLSVRENEKLVNPQSKKNPKGKHPKIGGSPPPKVTKGRLLYGLTNTLRLRLQQTNPNMLVVHEKREQYRRSQIQAVGPKLRIPSWKGKVSSSAAESQMSPQLPADTPTDSNGKLPSLAVQSQLPPQLPGDESLDSIGSFEEGSDTSMQIRAGFDESSTTKEVKQSHAMKQEMVDQSENRTIVTALRAPVSPAGSVTPERSLRSNSFGGNWKNKVPSPGLSLQEPTVDKTVDEGKDGRQVKAISAADTSENRPTSRKSSCESISELLYRDGFTSPCYSEDFCTTENNSRSLPAPDSSTGVEHVQKGSRASKSSEARLSTRKNSSDSSSVLTPPFSAGSPVCSHKRSRALKIHDSLEEASSLSTSDFSSQWTNEKENQADPGSSKVMRKGRDSSTKLKVRAGHKSSEKSQSPRTSQVSSYEPSNLSELELKAIDDSDLADFQEEEDGLGSLRISRQCKDICELVINKLPGYTV", "sequence_length": 891, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4c67d486ff1f3e346a0d37d101774a069e5b05ee7be9302cd7be76f1b8ab9002", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BJS7.json", "taxon_id": "10090", "uniprot_accession": "Q8BJS7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/map10-c-pf14925.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14925", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/map10-c-pf14925.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/microtubule-associated-protein-10-c-terminal-ipr026679.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR026679", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/microtubule-associated-protein-10-c-terminal-ipr026679.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/map10-n-pf14924.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14924", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/map10-n-pf14924.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9P2G4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF14924", "PF14925" ], "protein_name": "Microtubule-associated protein 10", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3ede6fab1fc58a0a686b25986fa141e9ff2bce4b35ffaf3443e9f6535e70a12f", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAASLSERLFSLELLVDWVRLEARLLPSPAAAVEQEEEEEEKEQGEASSPRGLCPAVAFRLLDFPTLLVYPPDGPGAPAAEPWPGVIRFGRGKSCLFRLQPATLHCRLLRTPLATLLLQLPPGRPTPTPQLLGACDISLATAAHRVVGPAASGCSHRHRGRFPLHNRVGERTGDIALAYRLTDLGSRLLSQLERPLTFTRTGGGAEVSPQTQQERQQLQQPASQPSPKEADKPLGELEIPEAQKDLKEMVKSKAECDNVGSVENGKTNSVVTCSGAGNGRNVSSLNEEVTELDMETNIFCPPPLYYTNLTQEKPPPAQAKITIEPQMNAPEEMDDASPEKKRVNPPAHRSCLKHPSSAAHEHPPMLVNPPHIQNIGATNQTCQTEQNRINTIRQLPLLNALLVELSLLYDQPVTSPAHIHPHLAWLYRTEDKKSPESSAKSTCRSEAKKDKRSVGGCEKSVSLQYKKNQIENYKEDKYSEKSSGALHKRVPKGRLLYGLTNTLRLRLKLTNPDMLVVHEKRELYRKRQSQMLGTKFRIPSSKVKLLSSAEQSQKPQLPEDKYLDSDASFTENSDTSRQISGVFDEPSTSKETKLKYATEKKTVDCSKNRINNVSLEEVVSPANSIIPERLTPTNILGGNVEMKIQSPCVFQQDAVVDRIVDKEIDIRQVKTTDNDILMADISDKRTGKNSCYENISELKYSDDLSSPCYSEDFCTSEDTSRSFKAHDSSSRTENPKHSQYTSKSSDTGVSKKKNSSDRSSILSPPFSAGSPVHSYRKFHISKTQDKSLEEASSISASDLSSTHWTEQKENQIDQNSMHNSEITKRAQDISVKTRSSWKSLEKSQSPQTSQVSSYLPSNVSELNVLDSSTSDHFEEGNDDVGSLNISKQCKDICELVINKLPGYTM", "sequence_length": 905, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3ede6fab1fc58a0a686b25986fa141e9ff2bce4b35ffaf3443e9f6535e70a12f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9P2G4.json", "taxon_id": "9606", "uniprot_accession": "Q9P2G4", "uniprot_release": "2026_03" } ], "pfam_id": "PF14924", "short_name": "MAP10_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Paramecium tetraurelia", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap300-pf14926.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap300-pf14926.yaml" } ], "pfam_ids": [ "PF14926" ], "protein_name": "Cilia- and flagella-associated protein 300", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQIESDNQVTNQSYSFFRQENTILDDKKFMEILQKWGLQHSIKVSTFLFDIKFDHLNPNQFLLDLFNSKDVRGSLHYVSFKQNVLLSQIKFQPLTCKSIKLDLFDKLTEDKIVVKGHIKQCFEEQFENIQIADELRKALVLEDSEQYCVFNEADRQELLFKLFQILVLGGQLCQYEDEIQAYLDWTKYLYKNTVNARKYADKDEIYIDSYAYDIRKLENSYSSDHPQNVMYVVVNPSLRIVNIIENQWLKVW", "sequence_length": 252, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3c55ab2a215e801f1f39caa1fc82ae9b95f4ad1e9b7109451029404baea0abc2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0CY51.json", "taxon_id": "5888", "uniprot_accession": "A0CY51", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydomonas reinhardtii", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap300-pf14926.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap300-pf14926.yaml" } ], "pfam_ids": [ "PF14926" ], "protein_name": "Cilia- and flagella-associated protein 300", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAFVPVSLPSTSALNDAYVKSQLTKWDLLRNLRCVAVRYTKYYHKLQGQELLADLFRDEKVQEAFQVLRKGGAWGQLGGPVTKVDATLLASSLTRMDLFDKLTETSPPIVRSNGDIGKCMEDNREGFQVSDQLRELILVEESEHAALFSEAERDELLWRLFEHVVLGGACCQFEDKVEPYVETSKRLYKELVCAQKDPATGKVQTVSAVYKINSIQGDSGPLELYPSRSRQNFCYAAVDPVRRIVKILYHAYVPYW", "sequence_length": 257, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "123e17b445b6634344c9a331a93d369f6862a21233fde09aa740c21c38273160", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8IYS6.json", "taxon_id": "3055", "uniprot_accession": "A8IYS6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap300-pf14926.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14926", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap300-pf14926.yaml" } ], "pfam_ids": [ "PF14926" ], "protein_name": "Cilia- and flagella-associated protein 300", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATGELGDLGGYYFRFLPQKTFQSLSSKEITSRLRQWSMLGRIKAQAFGFDQTFQSYRKDDFVMAFFKDPNVIPNLKLLSDSSGQWIILGTEVKKIEAINVPCTQLSMSFFHRLYDEDIVRDSGHIVKCLDSFCDPFLISDELRRVLLVEDSEKYEIFSQPDREEFLFCLFKHLCLGGALCQYEDVISPYLETTKLIYKDLVSVRKNPQTKKIQITSSVFKVSAYDSAGMCYPSAKNHEQTFSYFIVDPIRRHLHVLYHCYGVGDMS", "sequence_length": 267, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c561dfe3747db3989bbb32a1be230ca88acaddbf3f524e2b4b2f6417ff388811", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BRQ4.json", "taxon_id": "9606", "uniprot_accession": "Q9BRQ4", "uniprot_release": "2026_03" } ], "pfam_id": "PF14926", "short_name": "CFAP300", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transmembrane-protein-254-ipr028110.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028110", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transmembrane-protein-254-ipr028110.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tmem254-pf14934.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14934", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tmem254-pf14934.yaml" } ], "pfam_ids": [ "PF14934" ], "protein_name": "Transmembrane protein 254", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTATGAGYFQRGSLFWFTVITVSFGYYTWAVFWPQSIPYQSLGPLGPFTKYLVDHYHTFLRNGYWLAWLIHVGESLYALVLCKRKGITDVQAQLLWFLQTFLFGVASLSILIAYRSKRQKHN", "sequence_length": 123, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b19f0a2097c290cdba076a6e56f5c2d15fcf3338f93c30f07b1bb7e51a05fc01", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DN89.json", "taxon_id": "10090", "uniprot_accession": "P0DN89", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/transmembrane-protein-254-ipr028110.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028110", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/transmembrane-protein-254-ipr028110.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tmem254-pf14934.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14934", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tmem254-pf14934.yaml" } ], "pfam_ids": [ "PF14934" ], "protein_name": "Transmembrane protein 254", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATAAGATYFQRGSLFWFTVITLSFGYYTWVVFWPQSIPYQNLGPLGPFTQYLVDHHHTLLCNGYWLAWLIHVGESLYAIVLCKHKGITSGRAQLLWFLQTFFFGIASLTILIAYKRKRQKQT", "sequence_length": 123, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d2a582f14672348f26f6dee4f8a3b445dba6a2b8d5ac159529387be93eb025c0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TBM7.json", "taxon_id": "9606", "uniprot_accession": "Q8TBM7", "uniprot_release": "2026_03" } ], "pfam_id": "PF14934", "short_name": "TMEM254", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4500-pf14937.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14937", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4500-pf14937.yaml" } ], "pfam_ids": [ "PF14937" ], "protein_name": "Small integral membrane protein 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSGQSSSSSGKAGPQEPPSSAAEPAYRSPGLRGVRTTSLFRAVNPELFIRPNKPVMALGLLALSVCVGYLGYLHAIRDSDQQLYEAVDSDGETYMRRRTSRWD", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "68f456b18de357d685b9376950e9387c5be673073498586209af38bdf48cf0ea", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q502E5.json", "taxon_id": "7955", "uniprot_accession": "Q502E5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4500-pf14937.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14937", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4500-pf14937.yaml" } ], "pfam_ids": [ "PF14937" ], "protein_name": "Small integral membrane protein 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSAPEPPTFKKEPPKEKEFQSPGLRGVRTTTLFRAVNPELFIKPNKPVMAFGLVTLSLCVAYIGYLHAIQENKKDLYEAIDSEGHSYMRRKTSKWD", "sequence_length": 97, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "08b71de3b5eadb7087cf95eb0c82ddc29150e9d2e4b3c8cfa35f4a18698d6576", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96KF7.json", "taxon_id": "9606", "uniprot_accession": "Q96KF7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4500-pf14937.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14937", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4500-pf14937.yaml" } ], "pfam_ids": [ "PF14937" ], "protein_name": "Small integral membrane protein 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSAPDPPTVKKEPLKEKNFENPGLRGAHTTTLFRAVNPELFIKPNKPVMAFGLVTLSLCVAYIGYLHATQENRKDLYEAIDSEGHRYMRRKTSKWD", "sequence_length": 97, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3eb22333d73fbaa5b4ce96318e47d44f12d49b04ed46e65f54e52d9ac1bac604", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CQQ0.json", "taxon_id": "10090", "uniprot_accession": "Q9CQQ0", "uniprot_release": "2026_03" } ], "pfam_id": "PF14937", "short_name": "DUF4500", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4501-pf14946.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14946", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4501-pf14946.yaml" } ], "pfam_ids": [ "PF14946" ], "protein_name": "Uncharacterized protein C1orf159", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALRHLALLAGLLVGVASKSMENTVTRNSTAVINTQAEGTLSPPGLSSLPVVREWALTHTAQLPECCVDVVGVNASCPGASLCGPGCYRRWNADGSASCVRCGNGTLPAYNGSECRSFAGPGAPFPMNRSSGTPGRPHPGAPRVAASLFLGTFFISSGLILSVAGFFYLKRSSKLPRACYRRNKAPALQPGEAAAMIPPPQSSGNSSCRIPLWGFPSLGQSQGALWVCPQTGLPGSGSRPPLPGSPGDPPTRQGQGRIWLVPPALDLSWIWPAPPARPPLIPVTSMLFPVPETWGLQERRTHHDRADPQYLLLLEVQLHPRTDAAGLRQALLSSHRFSGAGSGGPKSQPVRKPRYVRRERPLDRATDPAAFPGEARISNV", "sequence_length": 380, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e5bb9d95150330f96335e6285223b6ffc1bb39926d238b59f9158dd6a624f46", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96HA4.json", "taxon_id": "9606", "uniprot_accession": "Q96HA4", "uniprot_release": "2026_03" } ], "pfam_id": "PF14946", "short_name": "DUF4501", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cellular-response-to-camptothecin-go0072757.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0072757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cellular-response-to-camptothecin-go0072757.yaml" }, { 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"canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4502-ipr028026.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4503-ipr028032.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028032", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4503-ipr028032.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4502-pf14950.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4502-pf14950.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4503-pf14951.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4503-pf14951.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q14159", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF14950", "PF14951" ], "protein_name": "DNA repair-scaffolding protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d5849c970ed8350c34a1aead7f9a5be81fe2c576b9440bc44a538c80c2bbcdcc", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTSGNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIEILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQKPTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLTVKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTVRIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVIKGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGAGVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKARQLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPALCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQLKSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSLFFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQGTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHLQVFLDCRSRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVKSVLGKEVGLLNCFVQSVTAHPTSCIGLEEIELLSAGGASAEH", "sequence_length": 915, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d5849c970ed8350c34a1aead7f9a5be81fe2c576b9440bc44a538c80c2bbcdcc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q14159.json", "taxon_id": "9606", "uniprot_accession": "Q14159", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-establishment-of-protein-localization-to-chromosome-go0070202.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070202", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-establishment-of-protein-localization-to-chromosome-go0070202.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4502-ipr028026.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028026", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4502-ipr028026.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4503-ipr028032.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028032", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4503-ipr028032.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4502-pf14950.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4502-pf14950.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4503-pf14951.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4503-pf14951.yaml" } ], "pfam_ids": [ "PF14950", "PF14951" ], "protein_name": "DNA repair-scaffolding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGARRPGTSKRKRNWHIEHPSFREERSQQLRRGNFKTVEAADSLSKAWLKCGEGFQDTSEILSLASEKTGITEKHLELSPKPKTETTSKNASELPNIIWSSSESDFSDEDKTLPALQRDGRHGPRADRLGDRTISCPEDEDIEDELQVIDWEVNSDKEDPGGPSECEDDKGTLDISDCDSCASLTSDDRLCEPSEPISTEILEYSSDSEKEEDPEHSLFIDSESPHKYQADFKSDARWCLVSQTDSEANSAEPTLTPQKYTVKFPKTPEYSVTKKKLLRGGLAERLQELQNRKRSAISLWRHRCVSYQMTPLGRKSGVLTVKILELHEECSMQVAVCEQLAGPPITSPPGGLAPRPGAYLKVLFTRETADHLMGHPQDIIYIFPPWQKLLIPNGSCSIILNTYFCQKAIAKETVREDLYSPDISLSRRNITLAQTFRIKDITDNSSINQTTYDSLATPGTGWTHGHEKAEQHLIVAAPLRNSLLDIVESQRAGLWSGVRVQVVVQRVYSLLSRDGARSQQGHTVGHADASGAWSCLLVQDACGMFGEVFLNSTLWKSRQLEGKSCSMSGVKVLQKATRGRTPGLFSLIDSLWPPVISLTEPSCGQPSGETKTYLPPPIFCYIFSAHPTLGQIDAIEDHISKLYQPPVVRCLKEILQTNECSTRCSFYARVIYQKPQLKNLLAQKEIWLLVTDITLQTQDERDHSLPKTLPVYIAPSCVLGPEVVEELALLVSYNLLFRDAFKDNGQIVCIERTVILPQKPLLCVPSASCDLPSPVTLDELSALTPVNSICSVQGTVVDVDESTAFSWPVCDRCGNGRLEQKPEDGGTFSCGDCSQLVLSPLQERHLHVFLDCPTRPESTVKVKLLESSISLLLMSAASEDGSYEVESVLGKEMGPLLCFVQSITTQQSSCVVTLEEIELLSTEGATAAQPPP", "sequence_length": 933, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "862ae34145740a75ceb8ba887952308ef2c03c3e881cd682b7443b38a173d358", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BGX7.json", "taxon_id": "10090", "uniprot_accession": "Q8BGX7", "uniprot_release": "2026_03" } ], "pfam_id": "PF14950", "short_name": "DUF4502", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cellular-response-to-camptothecin-go0072757.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0072757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cellular-response-to-camptothecin-go0072757.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-establishment-of-protein-localization-to-chromosome-go0070202.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070202", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-establishment-of-protein-localization-to-chromosome-go0070202.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4502-ipr028026.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028026", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4502-ipr028026.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4503-ipr028032.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028032", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4503-ipr028032.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4502-pf14950.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4502-pf14950.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4503-pf14951.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4503-pf14951.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q14159", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF14950", "PF14951" ], "protein_name": "DNA repair-scaffolding protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d5849c970ed8350c34a1aead7f9a5be81fe2c576b9440bc44a538c80c2bbcdcc", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTSGNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIEILEYSSDSEKEDDLENVLLIDSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQKPTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLTVKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTVRIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVIKGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGAGVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKARQLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPALCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQLKSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSLFFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQGTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHLQVFLDCRSRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVKSVLGKEVGLLNCFVQSVTAHPTSCIGLEEIELLSAGGASAEH", "sequence_length": 915, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d5849c970ed8350c34a1aead7f9a5be81fe2c576b9440bc44a538c80c2bbcdcc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q14159.json", "taxon_id": "9606", "uniprot_accession": "Q14159", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-establishment-of-protein-localization-to-chromosome-go0070202.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070202", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-establishment-of-protein-localization-to-chromosome-go0070202.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4502-ipr028026.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028026", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4502-ipr028026.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4503-ipr028032.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028032", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4503-ipr028032.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4502-pf14950.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14950", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4502-pf14950.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4503-pf14951.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4503-pf14951.yaml" } ], "pfam_ids": [ "PF14950", "PF14951" ], "protein_name": "DNA repair-scaffolding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGARRPGTSKRKRNWHIEHPSFREERSQQLRRGNFKTVEAADSLSKAWLKCGEGFQDTSEILSLASEKTGITEKHLELSPKPKTETTSKNASELPNIIWSSSESDFSDEDKTLPALQRDGRHGPRADRLGDRTISCPEDEDIEDELQVIDWEVNSDKEDPGGPSECEDDKGTLDISDCDSCASLTSDDRLCEPSEPISTEILEYSSDSEKEEDPEHSLFIDSESPHKYQADFKSDARWCLVSQTDSEANSAEPTLTPQKYTVKFPKTPEYSVTKKKLLRGGLAERLQELQNRKRSAISLWRHRCVSYQMTPLGRKSGVLTVKILELHEECSMQVAVCEQLAGPPITSPPGGLAPRPGAYLKVLFTRETADHLMGHPQDIIYIFPPWQKLLIPNGSCSIILNTYFCQKAIAKETVREDLYSPDISLSRRNITLAQTFRIKDITDNSSINQTTYDSLATPGTGWTHGHEKAEQHLIVAAPLRNSLLDIVESQRAGLWSGVRVQVVVQRVYSLLSRDGARSQQGHTVGHADASGAWSCLLVQDACGMFGEVFLNSTLWKSRQLEGKSCSMSGVKVLQKATRGRTPGLFSLIDSLWPPVISLTEPSCGQPSGETKTYLPPPIFCYIFSAHPTLGQIDAIEDHISKLYQPPVVRCLKEILQTNECSTRCSFYARVIYQKPQLKNLLAQKEIWLLVTDITLQTQDERDHSLPKTLPVYIAPSCVLGPEVVEELALLVSYNLLFRDAFKDNGQIVCIERTVILPQKPLLCVPSASCDLPSPVTLDELSALTPVNSICSVQGTVVDVDESTAFSWPVCDRCGNGRLEQKPEDGGTFSCGDCSQLVLSPLQERHLHVFLDCPTRPESTVKVKLLESSISLLLMSAASEDGSYEVESVLGKEMGPLLCFVQSITTQQSSCVVTLEEIELLSTEGATAAQPPP", "sequence_length": 933, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "862ae34145740a75ceb8ba887952308ef2c03c3e881cd682b7443b38a173d358", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BGX7.json", "taxon_id": "10090", "uniprot_accession": "Q8BGX7", "uniprot_release": "2026_03" } ], "pfam_id": "PF14951", "short_name": "DUF4503", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4504-pf14953.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14953", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4504-pf14953.yaml" } ], "pfam_ids": [ "PF14953" ], "protein_name": "UPF0739 protein C1orf74 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTPSPQLLVAAAQQTLGMGKRRGPPRAVCLHLAGEVLAVARGLKPALLYDCSSAGAPEIQSYLEKLRGLGFPTQGLHVLEIAENSLIVHPEYVRRHLEQVLLGSIAFVDVSGSQPYPAVCSLDQLQDFKALVVEIITHLQGLQRDRSLAVSCSRLCSSAWNLCTVFGILLGYPVPYTFHENQGEDNCLAQTPLRVFTARISWLCCQPPVLLYSFSVPESLFLSLRDILNTWEKDLRTRCRTQNDFADLSISSEIVTLPAVAL", "sequence_length": 263, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b976846fcfd4793ac7792b63942edd7d2741db21099c881e147722fbb7585102", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6QQA5.json", "taxon_id": "9913", "uniprot_accession": "A6QQA5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4504-pf14953.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14953", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4504-pf14953.yaml" } ], "pfam_ids": [ "PF14953" ], "protein_name": "UPF0739 protein C1orf74", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLLDLMSSPSPQLLVAAAQQTLGMGKRRSPPQAICLHLAGEVLAVARGLKPAVLYDCNCAGASELQSYLEELKGLGFLTFGLHILEIGENSLIVSPEHVCQHLEQVLLGTIAFVDVSSCQRHPSVCSLDQLQDLKALVAEIITHLQGLQRDLSLAVSYSRLHSSDWNLCTVFGILLGYPVPYTFHLNQGDDNCLALTPLRVFTARISWLLGQPPILLYSFSVPESLFPGLRDILNTWEKDLRTRFRTQNDFADLSISSEIVTLPAVAL", "sequence_length": 269, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7a0b846a9200b6d0f5f70a37a57bbec74f6ef220571e5c7f07527295f704197e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96LT6.json", "taxon_id": "9606", "uniprot_accession": "Q96LT6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4504-pf14953.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14953", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4504-pf14953.yaml" } ], "pfam_ids": [ "PF14953" ], "protein_name": "UPF0739 protein C1orf74 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTPSPQLLVAAAQQTLGMGKRKCPPRATCLHLAGEVLAVARGLKPAVLYDCNSAGVLALQSYLEELQGLGFLEPGLHILEIGENNFIVSPEYACQHLEQTLLGTVAFVDVSRSQPHPSVRSVDQLPDLKSLIADVITRFRGLKKDVSQGVSYTRLHSSDWNLCTVFGILLGYPVSYTFDLNREDDNCLTMTPLRVFTARISWLPGQPSILLYSFSVPESLFPALKNFLSAWEKELRTRFRAQNAFADLSISSEVVTLPAVAL", "sequence_length": 263, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "86adcb8cc0d9bf43aea538b496cc81808f075fd1c8088cbf01f4b99c424214e1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DAE8.json", "taxon_id": "10090", "uniprot_accession": "Q9DAE8", "uniprot_release": "2026_03" } ], "pfam_id": "PF14953", "short_name": "DUF4504", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4505-pf14956.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14956", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4505-pf14956.yaml" } ], "pfam_ids": [ "PF14956" ], "protein_name": "UPF0598 protein C8orf82 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWAMSGALRPWALILARSPGARTYAGGGGVSYTQGQSPEPRTREYFYYVDHQGQLFLDDSRMKNFTTCFKDPQFLVMFFSRLRPNRSGRYEAYFPFLSLCGRERNFLRCEDRPVVFTHLLAAGPAPQRLSYCGGGEALAVPFEPARLLPLATNGRLYHPAPERAGGVGLVRSALAFELSACFEYAPGAPELPSHVRWQGRRFALTMDLAPLLLAAPPP", "sequence_length": 218, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "536dcd156287ebe0911c3e823567d2675acfb1d20a63c4f6068bfff333974d78", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8E4L3.json", "taxon_id": "9913", "uniprot_accession": "A8E4L3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4505-pf14956.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14956", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4505-pf14956.yaml" } ], "pfam_ids": [ "PF14956" ], "protein_name": "UPF0598 protein C8orf82", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWPPCGTLRTLALARSRGARACSGDGGVSYTQGQSPEPRTREYFYYVDHQGQLFLDDSKMKNFITCFKDPQFLVTFFSRLRPNRSGRYEAAFPFLSPCGRERNFLRCEDRPVVFTHLLTADHGPPRLSYCGGGEALAVPFEPARLLPLAANGRLYHPAPERAGGVGLVRSALAFELSACFEYGPGAPALPSHVRWQGRRLALTMDLAPLLLAARSP", "sequence_length": 216, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "782facd83b53f4009ae0633952c2492aac85acb84c422286c8a4e9aa2bab154d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P1X6.json", "taxon_id": "9606", "uniprot_accession": "Q6P1X6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4505-pf14956.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14956", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4505-pf14956.yaml" } ], "pfam_ids": [ "PF14956" ], "protein_name": "UPF0598 protein CG30010", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFILRSRSLTNLKFVRSPSISCRYVQYNQGQSPEPKIREYFYYIDHEGMLFLDDAKMKNFTSCFKEKDFLKFFFNRLRLNKTSRYESEFPYISLCGRERNFIRCDDTPVVFTEQLRKDDTEVLSYAHAGQVLTLPYEPHKLYMDPRNGRVYHPAAPQVGGIGLVRSKLAIELSQHFEFLAGEASPTHFQWNGERLELQNEWVNNTQRFPMNEDCK", "sequence_length": 215, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f51d55f6d84fa9ac72ce620ab93d462a70d0ee1900d6f31c1dc2fd18567366de", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8MKL1.json", "taxon_id": "7227", "uniprot_accession": "Q8MKL1", "uniprot_release": "2026_03" } ], "pfam_id": "PF14956", "short_name": "DUF4505", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/paat-like-pf14958.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14958", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/paat-like-pf14958.yaml" } ], "pfam_ids": [ "PF14958" ], "protein_name": "ATPase PAAT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METAIEDAGLDRGPTLTSSWDAACGALTQSLFLTRTGPRAQDLDFEQLLEPPAPSQDPVSLKSSLSPRDENPCFIYLNCGPNGGEEILSVGVLSSARNMEVYLGEEYCGTSRGKTACTVLDDSEHEKILLYKKYLKLDSPTHACKIKLLSFGEKQCVLVSKVVVHLRPRSADPSPRSAALGSRIDLDNIQTIMESMGSRLSPGAQQLMSMIRFQQQNRLPIGDQLQSVLGSAGHKHLMALQSSPSPAVLDKASSTPFPFRTGLTPSAITENLKALIDKSAQPSGEGNTTNHDEGHLMPQNHSLESDLKNAVSSFLPKKASGSSSVPSSELLPFLQNLCSQVNHLRVGHNARWQENISKPREGMVGVPMEEQPVCSYLEKILSKNMELMEKKLMDHIDERIYQLQEHIDAKMALLVDLLRGPNSPPPGMPLRHYDSRERLSNGER", "sequence_length": 444, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2c78201b5e01aa95608e1a3f5553d3963aee050bf60201af5edf276edf6a670a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D2Q3.json", "taxon_id": "10090", "uniprot_accession": "Q9D2Q3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/paat-like-pf14958.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14958", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/paat-like-pf14958.yaml" } ], "pfam_ids": [ "PF14958" ], "protein_name": "ATPase PAAT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METRTEDGGLTRRPTLASSWDVAGGALTHSLLLTRAGLGPGDFDWEELLAPPAPGQDLVILKRNHNNKDENPCFLYLRCGPDGGEEIASIGILSSARNMEVYLGEEYCGTSRGKNVCTVLDDSEHEKIILYKKNLKLESSTHACKIKLLSFGERQCVFISKVVVHMRSVFANSSTSSPALGSRIDLDKVQTIMESMGSKLSPGAQQLMDMVRCQQRNCIPIGEQLQSVLGNSGYKHMIGLQSSSTLGTLNKSSSTPFPFRTGLTSGNVTENLQTYIDKSTQLPGGENSTKLDECKVMPQNHSFLENDLKNAMASFLPKKVSDNSNIPNSELLPFLQNLCSQVNHLHVGNKTECQENITKHGERILGVGMEEQSICSYLEKILSKNMELMEKKLMDYIDQRIHELQEHIDDKIALLLDLLQNPNSPPTGIPLRHYDSGERLSNGER", "sequence_length": 445, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "032e442444266a4f2d72c547449833f10150f2a3d1b196ea69ff7b775a7dfdbc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H8K7.json", "taxon_id": "9606", "uniprot_accession": "Q9H8K7", "uniprot_release": "2026_03" } ], "pfam_id": "PF14958", "short_name": "PAAT-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ints15-pf14964.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14964", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ints15-pf14964.yaml" } ], "pfam_ids": [ "PF14964" ], "protein_name": "Integrator complex subunit 15", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDIRHALLRRDPLSAAKEVLYHLDISLGSALQSSAGPPAGLEKSTVELVEEFIFHVSKDRNIQSKRMSCVQELQLLEIICSYFQEQSKDAIRQVIFSALFSLQGNKADESRMAMLGKLVSMSIAVCRVPILECAAIWLQRTHSAWCVRLAQVLMEDYCTLVPCAISTLQNICSASPRFCCQLITAVTALYDFSTDELTPPPALLEMLVGWITEDPRLLLLTFINSPLNSSLPLGCLEITPLLGLLRWCVKAPLAYHRGRKSAMTNGHGDGEKGTAYEELYSKLHLSVLQVFLMLQVHLTEKNMFCRLTVLPVESVAALIEEVGRLCEKLAPLLDASHIQLALDRLAQALQVAMATGALLCAREDLRALCSRLPHNNLLQLVMSGPVVQPPPHSSPFQPNMYPHIHPGRPSPLSPHSPHQSTLSSPHSPHTVLTAHPTHPALAPHRPLTAHATHPALSPHAFHPASIAFPYRPIR", "sequence_length": 475, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b053f1b4f32f09c85da5507ac936c0a4fd4e6e5fedb68a9bf5daab445d4516d2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q7ZTY6.json", "taxon_id": "7955", "uniprot_accession": "Q7ZTY6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ints15-pf14964.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14964", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ints15-pf14964.yaml" } ], "pfam_ids": [ "PF14964" ], "protein_name": "Integrator complex subunit 15", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDIRHSLLRRDALSAAKEVLYHLDIYFSSQLQSAPLPIVDKGSVELLEEFVFQVPKERGAQPKRLNSLQELQLLEIMCSYFQEQSKDSVRQIIFSSLFSPQGNKADDSRMSLLGKLVSMAVAVCRIPVLECAASWLQRTPVVYCVRLARVLVEDYCCLVPGSVQTLKQIFSASPRFCCQFITSVTALYDLSSDDLIPPLDLLEMIVSWIFEDPRLILITFLNTPIAANLPIGFLELTPLIGLIRWCVKAPLAYKRKKPCLSNGHISHKVAKDSGASTDRDSHLLYSKLHLSVLQVLMTLQLHLTEKNLYGRLGLILFDHMVPLVEEINRLADELNPLNASQEIELALDRLAQALQVAMTSGALLCTRDDLRTLCSRLPHNNLLQLVISGPVQQSPHTALPPGFYPHIHTPPLAYGAVPAHPAAHPALPTHPGHTFISGVTFPFRPIR", "sequence_length": 448, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "21b0653c0865c515fd1033623458656cdfa5940bd6837a4c5adefa9672b81d84", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BGA7.json", "taxon_id": "10090", "uniprot_accession": "Q8BGA7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ints15-pf14964.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14964", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ints15-pf14964.yaml" } ], "pfam_ids": [ "PF14964" ], "protein_name": "Integrator complex subunit 15", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDIRHSLLRRDALSAAKEVLYHLDIYFSSQLQSAPLPIVDKGPVELLEEFVFQVPKERSAQPKRLNSLQELQLLEIMCNYFQEQTKDSVRQIIFSSLFSPQGNKADDSRMSLLGKLVSMAVAVCRIPVLECAASWLQRTPVVYCVRLAKALVDDYCCLVPGSIQTLKQIFSASPRFCCQFITSVTALYDLSSDDLIPPMDLLEMIVTWIFEDPRLILITFLNTPIAANLPIGFLELTPLVGLIRWCVKAPLAYKRKKKPPLSNGHVSNKVTKDPGVGMDRDSHLLYSKLHLSVLQVLMTLQLHLTEKNLYGRLGLILFDHMVPLVEEINRLADELNPLNASQEIELSLDRLAQALQVAMASGALLCTRDDLRTLCSRLPHNNLLQLVISGPVQQSPHAALPPGFYPHIHTPPLGYGAVPAHPAAHPALPTHPGHTFISGVTFPFRPIR", "sequence_length": 449, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1ff8685d2ef51bb88b317f7427ba6b62577e684465e4370bdb7158913584e36a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96N11.json", "taxon_id": "9606", "uniprot_accession": "Q96N11", "uniprot_release": "2026_03" } ], "pfam_id": "PF14964", "short_name": "INTS15", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4508-pf14969.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4508-pf14969.yaml" } ], "pfam_ids": [ "PF14969" ], "protein_name": "Uncharacterized protein C14orf119 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLESSSTSVPPCFPSVLPSVPDDIASSSPPPMSYITSQEMKCILYWFASWSGPQRERFLQDLVAKAVPGKLQPLLDALEQLSMSAANRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLEVSEPDFVAKFYQAVAATAGKD", "sequence_length": 142, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dc1e2ecbd24cc7f5eb27b58fb818f04d29296fda0fa78a21252f24f2576f6c51", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JJ93.json", "taxon_id": "10090", "uniprot_accession": "Q9JJ93", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4508-pf14969.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4508-pf14969.yaml" } ], "pfam_ids": [ "PF14969" ], "protein_name": "Uncharacterized protein C14orf119", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLESSSSMPLSFPSLLPSVPHNTNPSPPLMSYITSQEMKCILHWFANWSGPQRERFLEDLVAKAVPEKLQPLLDSLEQLSVSGADRPPSIFECQLHLWDQWFRGWAEQERNEFVRQLEFSEPDFVAKFYQAVAATAGKD", "sequence_length": 140, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d718ce90a14a2a272c46e8ad9648b8e9f65ac24c5c0c1cb818cd5a1f249fbbcf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NWQ9.json", "taxon_id": "9606", "uniprot_accession": "Q9NWQ9", "uniprot_release": "2026_03" } ], "pfam_id": "PF14969", "short_name": "DUF4508", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tubulin-epsilon-and-delta-complex-protein-1-domain-ipr027996.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027996", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tubulin-epsilon-and-delta-complex-protein-1-domain-ipr027996.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tedc1-pf14970.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14970", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tedc1-pf14970.yaml" } ], "pfam_ids": [ "PF14970" ], "protein_name": "Tubulin epsilon and delta complex protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRRRSRVEGAARALPEAVAALSRCLPAGPSPEIFRRAKFDRPEAAPVLWQLLLRVLSPLAANNTWTDLAPEAQACVVKSALGSQGYPRSVLLQFPDGSSQGSRELLLALSWLLARGPLLEQLLAQTRVQLGDQLPQWEAPTSPGPPAPFVEPKSPVDLRLVEWLMGRLRFRWRCLISSQQEQCILLSKIHLYTQGCHSQQSLGHLSVAETEMLRDPESGQQLLQALESENIRLEAALEWRRRELVFWQWMDTVLDTCSPETPAVTSQPTFLPEISEGGLGELESVKQELQALQEELREVSEPRRAAWEARVGGLGQGPEWSNSRKALQEAVQQELAALQGSWEQSSTPGQPQRPHRLVRSKDGAPRPQGLQAAEVIRTLSAKEACLKKALHQLQRQCQQELARLAGALPGLIWILPPEH", "sequence_length": 420, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "204bda64ab6828fb4cc11b44d2e79e8b35db8af96f60efa8983cf039de7257cc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UK37.json", "taxon_id": "10090", "uniprot_accession": "Q3UK37", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tubulin-epsilon-and-delta-complex-protein-1-domain-ipr027996.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027996", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tubulin-epsilon-and-delta-complex-protein-1-domain-ipr027996.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tedc1-pf14970.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14970", "section": "canonical_examples", "url": 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"registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLGVSMLRILFLLDVGGAQVLATGKTPGAEIDFKYALIGTAVGVAISAGFLALKICMIRRHLFDDDSSDLKSTPGGLSDTIPLKKRAPRRNHNFSKRDAQVIEL", "sequence_length": 105, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ad883969c275f6818d9ce930a64a82cd50d26841a773b14fa970a25ad080572c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T292.json", "taxon_id": "9606", "uniprot_accession": "Q5T292", "uniprot_release": "2026_03" } ], "pfam_id": "PF14986", "short_name": "DUF4514", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Xenopus laevis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4515-pf14988.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14988", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4515-pf14988.yaml" } ], "pfam_ids": [ "PF14988" ], "protein_name": "Basal body-orientation factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKLKVKAGKGKKGKRKKAGKNEHRLDKESEVERARSNAALWEARLKVTEFSRVEYRDAARSLAQNNEDLTKQQYKLEKDMVEVIGFLKKQDLEKDELIEKLQQNLIAQKKSAQDEREKLVELYSKQIAHLEENYSQKTNEMQIIQSEFKLMREFRRQKVELEKELDEVKESLWRANQDHKETLARMERRFFEEKQRLEKEAEKKIMMLAEKAHSEAIIQLDEARKSVFKENVRLKEAFSYHLKEMKDIKKSKKMQEDAKLHLLQEKETNDLLVQEKVSQVSQKKVQIQELQQNVKALECALERMTMEMEKDAQGKEHQALLQEQAGNVELQKLQKVLHMKEREMNRIKKLARNILEERTEVESFFLEALWQVKQEIATSRNYYRQVAQSAYTSKMIQASLGKDQYPKIRTFHNKEHSTNDVSHDLSEAEKWTHIQAGKVDIGDLTWEQKEKVLRLLFAKMNGFQSRKSPGLKPSPPADVSSIKEKEINTSNLEEKPEESSSTFITQSIPELPAPSLVLPHIQTGRCQVTG", "sequence_length": 531, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e95a219fd44c382bf09de6e2b55c312911afd3033a0d61da3cbf7834ce1261eb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0JMY4.json", "taxon_id": "8355", "uniprot_accession": "A0JMY4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4515-ipr032777.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032777", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4515-ipr032777.yaml" } ], "pfam_ids": [ "PF14988" ], "protein_name": "Coiled-coil domain-containing protein 166", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPKKKRGPSAGSQPGGAAAAGAEQPLSERAQYLQREHALLSEQLDTCEESVDQVLRENAFLDREALRLREENRLYASYVSARAQRCAKAIVRLDEQNRVDLAQIHWQRAELASLYHGREDGVRAQLLEMEARAAQMAQQVQELQPYKVLQLEQLARIRALERELLHMRVEHTQLLHRVKRRFLEDKAAFEREARQRVQSLARRAEREAVRALVAHTQAIKADNGRLRQELLLLLRRTQLLHHTRRQLLEQREQLHREHEDTRDLARVHGWLRRGPGGPPLWERPAFSQPTSRPGSLAAPISPSRAASQTPSVVPSRAAPRASSVVPSREASRVPSLVLSSMDSRVPSLATSKVGSRMPSLTASRAGSRALSLVQSLEGSGISSGSSPRVSSQDTLRSTKSGPKLLSGLSRDRDPALLPPQSEDSVNAEAAAEASPGRA", "sequence_length": 439, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f30ad12537a91738707aaf4538b40aa73296f44810188ba9535b23d1c8097326", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0CW27.json", "taxon_id": "9606", "uniprot_accession": "P0CW27", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4515-ipr032777.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032777", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4515-ipr032777.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4515-pf14988.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14988", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4515-pf14988.yaml" } ], "pfam_ids": [ "PF14988" ], "protein_name": "Basal body-orientation factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPAKDKRKDKRKDKRKGKNKGKEPKKIIKSDEPAIERAKANASLWEARLEVTELSRIEYRDTSRRLAKNNEDLKKQQYNMEKDIMSVLSYLKKQDQEKDNMIEKLKQQLAKTKEKAQEEKEKLEQKYALQVSELEGQFHQKAKEIGMIQTELKTIKQFQKRKIQVEKELDDLKENLRNSEKNYQETLRRLESRFFEEKHRLEQEAEKRIIMLAERAHHEAVVQLNTAGRNVFKENVYLHKALAYHLKEAEILQQNSKKIEENHSCLLQQKEINDLLVKEKIMQLTQQKSQIQTLQKKVVSLENALTYMTTEFEAEVLKLQQKAIIENQAGLVEIDKLQQLLQMKDREMNRVKRLAKNILDERTEVEQFFLDALYEVKQQILASRKHYKQIAQAAFNLKMRAACAGKTEYPRIRTFDGKEQSTNSVNQDLLEAEKWPTTQKNVDIRDLTWEQKEKVLRLLFAKMNGFAARKYSQSSKPPVPDHIIYGSGEMKETGDENNLLDQTFITQQAPVSDSNRMVSPDVIPQGLQDSDIA", "sequence_length": 533, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "73b9b0885e9e5e757c9740bb4aa4dedc901bf3f0e9fbe4a2a2f988ee7f81923c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3V079.json", "taxon_id": "10090", "uniprot_accession": "Q3V079", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4515-ipr032777.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032777", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4515-ipr032777.yaml" } ], "pfam_ids": [ "PF14988" ], "protein_name": "Coiled-coil domain-containing protein 121", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDLNKHIKQAQTQRKQLLEESRELHREKLLVQAENRFFLEYLTNKTEEYTEQPEKVWNSYLQKSGEIERRRQESASRYAEQISVLKTALLQKENIQSSLKRKLQAMRDIAILKEKQEKEIQTLQEETKKVQAETASKTREVQAQLLQEKRLLEKQLSEPDRRLLGKRKRRELNMKAQALKLAAKRFIFEYSCGINRENQQFKKELLQLIEQAQKLTATQSHLENRKQQLQQEQWYLESLIQARQRLQGSHNQCLNRQDVPKTTPSLPQGTKSRINPK", "sequence_length": 278, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e531ad36bf418ea95019aa43e31267e59adbfc1d4c6ac0379bd037635367f6a8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZUS5.json", "taxon_id": "9606", "uniprot_accession": "Q6ZUS5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4515-ipr032777.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032777", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4515-ipr032777.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4515-pf14988.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14988", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4515-pf14988.yaml" } ], "pfam_ids": [ "PF14988" ], "protein_name": "Basal body-orientation factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPSKGKDKKKGKSKGKDTKKLIKTDESVVDRAKANASLWEARLEVTELSRIKYRDTSRILAKSNEDLKKKQCKMEKDIMSVLSYLKKQDQEKDNMIEKLKQQLNETKEKAQEEKDKLEQKYTRQINELEGQFHQKAKEIGMIHTELKAVRQFQKRKIQVERELDDLKENLRNTERIHQETLRRLESRFFEEKHRLEQEAEKKIIMLAERAHHEAIVQLNDAGRNVFKENDYLQKALAYHLKETDALQKNSQKLQESHTLLLHQKEINDLLVKEKIMQLVQQRSQIQTLQKKVVNLETALSYMTKEFESEVLKLQQHAMIENQAGQVEIDKLQHLLQMKDREMNRVKKLAKNILDERTEVERFFLDALHQVKQQILISRKHYKQIAQAAFNLKMRAACTGRTEYPKIRTFDGREHSTNSVNQDLLEAEKWTHIEGNVDIGDLTWEQKEKVLRLLFAKMNGCPSRKYNQSSRPPVPDYVVSDSGETKEFGDESKLQDKIFITQQIAISDSSGEVVLPTIPKEPQESDTGTF", "sequence_length": 529, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "08d1d9a65d59f9c94eb2ff6d393c610cd1943f2566574f14efd9c314d0b0ae35", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8ND07.json", "taxon_id": "9606", "uniprot_accession": "Q8ND07", "uniprot_release": "2026_03" } ], "pfam_id": "PF14988", "short_name": "DUF4515", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4516-pf14990.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14990", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4516-pf14990.yaml" } ], "pfam_ids": [ "PF14990" ], "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPAGVSWPRYLRMFAASVLSMFAGAQVVHHYYRPDLSIPEIPPKPGELRTELLGLKERQMDSQKQ", "sequence_length": 65, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9012981dbc739cca64d3e725c7616f4ac6771c296c2a4a741f3d987c65ba8003", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E7EXZ6.json", "taxon_id": "7955", "uniprot_accession": "E7EXZ6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4516-pf14990.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14990", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4516-pf14990.yaml" } ], "pfam_ids": [ "PF14990" ], "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPAGVPMSTYLKMFAASLLAMCAGAEVVHRYYRPDLTIPEIPPKRGELKTELLGLKERKHKPQVSQQEELK", "sequence_length": 71, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ed713d70e1deb7f2a6e514a1a9a479a014e83a0abef5d750d28cec4fe8d2ea76", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q69YU5.json", "taxon_id": "9606", "uniprot_accession": "Q69YU5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4516-pf14990.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF14990", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4516-pf14990.yaml" } ], "pfam_ids": [ "PF14990" ], "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGGVPWSAYLKMLSSSLLAMCAGAQVVHWYYRPDLTIPEIPPKPGELKTELLGLKERRHEPHVSQQ", "sequence_length": 67, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1cebe850731ff663cca465456cf6967b7673d89720d1d339452c94175738c3b5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BTC1.json", "taxon_id": "10090", "uniprot_accession": "Q8BTC1", "uniprot_release": "2026_03" } ], "pfam_id": "PF14990", "short_name": "DUF4516", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4517-pf15006.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15006", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4517-pf15006.yaml" } ], "pfam_ids": [ "PF15006" ], "protein_name": "Adipose-secreted signaling protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAANRGSKPRVRSIRFAAGHDAEGSQSHVHFDEKLHDSVVMVTQESDNSFLVKVGFLKILHRYEITFTLPAVRRLSKDIREAPVHSLHLKLLSVTPIPEGYSIKCEYSAHKEGVLKEEMLLACEGDIGTCVHVTVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD", "sequence_length": 174, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c45540beee9d4b5f624e9e631ab10d014fa2568b8cd98d56c28101789da30a2f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4KM45.json", "taxon_id": "10116", "uniprot_accession": "Q4KM45", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4517-pf15006.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15006", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4517-pf15006.yaml" } ], "pfam_ids": [ "PF15006" ], "protein_name": "Adipose-secreted signaling protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAANRGSKPRVRSIRFAAGHDAEGSQSHVHFDEKLHDSVVMVTQESDNSFLVKVGFLKILHRYEITFTLPPVRRLSKDIRETPVHSLHLKLLSVTPTSEGYSIKCEYSAHKEGVLKEEMLLACEGDIGTCVRVTVQARVMDRHHGTPMLLDGVKCVGAELEYDSEQSDWLGFD", "sequence_length": 174, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7b617ce7e4f8c13bcae82b5310277c0698e543d5bad962c8d6e56ffcd6b13410", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D1K7.json", "taxon_id": "10090", "uniprot_accession": "Q9D1K7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4517-pf15006.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15006", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4517-pf15006.yaml" } ], "pfam_ids": [ "PF15006" ], "protein_name": "Adipose-secreted signaling protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAANKGNKPRVRSIRFAAGHDAEGSHSHVHFDEKLHDSVVMVTQESDSSFLVKVGFLKILHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVVPVPEGYSVKCEYSAHKEGVLKEEILLACEGGTGTCVRVTVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD", "sequence_length": 174, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6a52fd134d55e48be92e1d600e08b8c5b71665ec4c41fc85bcf4d342bcde4f06", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9GZN8.json", "taxon_id": "9606", "uniprot_accession": "Q9GZN8", "uniprot_release": "2026_03" } ], "pfam_id": "PF15006", "short_name": "DUF4517", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4518-pf15008.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4518-pf15008.yaml" } ], "pfam_ids": [ "PF15008", "PF29669" ], "protein_name": "Uncharacterized protein C3orf38 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGLSYTEMEGCRNLLSLLDNDEIMALCDTITNRLVQPEDRQDAIRAILVYSQSVEELLRRRKVHREIIFKYLATQGVIIPPATEKHNLIQHAKDYWKKQLQPKLKETPEPVKTEDIRLSEQQEKEEKNAEKVDFRRLGEEFCQWFFELLNSQNPLLGPPQDEWGPQHFWHDVKLRFYYNTSEQNVIDYHGAEIVSLRLLSLVKEEYLFLSPNLDSHGQKYAASPHGLVMVGVAGTVHRGNTCLGIFEQIFGLIRCPFVENTWKIKFINLRIIGESSLAPGRLMKPAITFEPSDLEAFYNVNTLCGPVKYNSM", "sequence_length": 313, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a42f976d56f22ec8d796b2eaf07a04d0fece73d02cd45f27d14776c6d5c966ae", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q0VCL9.json", "taxon_id": "9913", "uniprot_accession": "Q0VCL9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4518-pf15008.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4518-pf15008.yaml" } ], "pfam_ids": [ "PF15008", "PF29669" ], "protein_name": "Uncharacterized protein C3orf38 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGLSHLESEGCRNLLGLLDNDEIMALCDTVTNRLVQPVDRQDAIHAILVYSQNVEELLRRKKVHREVIFKYLAKQGVVVPPTAEKHNLIQYAKDYWAKQSPKLKDTAEPVTKTEDIQLFKQQAKEDKEAEKVDFRRLGEEFCHWFFELLNSQNPFLGPPQDDWGPQHFWHDAKLRFYYNTSEQNTTDYQGAEIVSLRLLSLVKEEFLFLSPNLDSQGLKCASSPHGLVMVGVAGTVHRGNSCLGIFEQIFGLIRSPFVENTWKIKFINLRIIGGSSLAPESVLKPSVTFEPSDLEAFYNVITLCNSPEVRPNVRQIIDSGTGDQVLHSGDEALLNKREMNLLTPLKH", "sequence_length": 348, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b010d3290a55d520b1d38cf6512d9f05f3101845b1ec8207a596f98e256b4dec", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3TTL0.json", "taxon_id": "10090", "uniprot_accession": "Q3TTL0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4518-pf15008.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4518-pf15008.yaml" } ], "pfam_ids": [ "PF15008", "PF29669" ], "protein_name": "Uncharacterized protein C3orf38", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEMSGLSFSEMEGCRNLLGLLDNDEIMALCDTVTNRLVQPQDRQDAVHAILAYSQSAEELLRRRKVHREVIFKYLATQGIVIPPATEKHNLIQHAKDYWQKQPQLKLKETPEPVTKTEDIHLFQQQVKEDKKAEKVDFRRLGEEFCHWFFGLLNSQNPFLGPPQDEWGPQHFWHDVKLRFYYNTSEQNVMDYHGAEIVSLRLLSLVKEEFLFLSPNLDSHGLKCASSPHGLVMVGVAGTVHRGNTCLGIFEQIFGLIRCPFVENTWKIKFINLKIMGESSLAPGTLPKPSVKFEQSDLEAFYNVITVCGTNEVRHNVKQASDSGTGDQV", "sequence_length": 329, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6b378dc2f6fbe024f64cdfea8f6891934f4f6d808581a664a80fd98659c3221d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5JPI3.json", "taxon_id": "9606", "uniprot_accession": "Q5JPI3", "uniprot_release": "2026_03" } ], "pfam_id": "PF15008", "short_name": "DUF4518", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4519-pf15012.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4519-pf15012.yaml" } ], "pfam_ids": [ "PF15012" ], "protein_name": "Single-pass membrane and coiled-coil domain-containing protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRQLKGKPKKETSRDKKERKQAMQEARRQITTVVLPTLAVVVLLIVVFVYVATRPASTE", "sequence_length": 59, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e989ff884d52f921c164564d19ba7d8f19a44779e7d039025dbd31c1a4f8a725", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q32PD9.json", "taxon_id": "9913", "uniprot_accession": "Q32PD9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4519-pf15012.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4519-pf15012.yaml" } ], "pfam_ids": [ "PF15012" ], "protein_name": "Single-pass membrane and coiled-coil domain-containing protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRQLKGKPKKETSKDKKERKQAMQEARQQITTVVLPTLAVVVLLIVVFVYVATRPAVTE", "sequence_length": 59, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2d578e60f97308d598025f9bc2d7396b447d0839245adce559e4458be4012e2b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JIS3.json", "taxon_id": "10090", "uniprot_accession": "Q9JIS3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4519-pf15012.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4519-pf15012.yaml" } ], "pfam_ids": [ "PF15012" ], "protein_name": "Single-pass membrane and coiled-coil domain-containing protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRQLKGKPKKETSKDKKERKQAMQEARQQITTVVLPTLAVVVLLIVVFVYVATRPTITE", "sequence_length": 59, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f2f3a9a9598be249e8cfe772702d049f2219cd5343fffcc184d8d60e25aea231", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NRQ5.json", "taxon_id": "9606", "uniprot_accession": "Q9NRQ5", "uniprot_release": "2026_03" } ], "pfam_id": "PF15012", "short_name": "DUF4519", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-c-terminal-ipr027865.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027865", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-c-terminal-ipr027865.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-domain-ipr053900.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-domain-ipr053900.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-n-terminal-ipr027830.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027830", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-n-terminal-ipr027830.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-second-domain-ipr053899.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053899", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-second-domain-ipr053899.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-2nd-pf22833.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-2nd-pf22833.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-c-pf15016.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15016", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-c-pf15016.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-like-n-pf15025.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-like-n-pf15025.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/polo-box-4-pf22834.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22834", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/polo-box-4-pf22834.yaml" } ], "pfam_ids": [ "PF15016", "PF15025", "PF22833", "PF22834" ], "protein_name": "Uncharacterized protein C5orf34 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGMAAEVRMVLYEDDSVQVHYACGSTLQLSPCGSEFLFEKALPPSTHPLEQPERIRQRTHFVISNYREQLQRALDFRNSSATCPFLSESIIPPERKKHIFIDFSEVEWPSLDRDDCIMYSESGVVKITSLDGHAYLCLPRSQHEFTVHFLCKVSQRPDSSGILSETQNQDPKNKLVEKTRKVCRCGNLSEQTLRNKENEPPYQILKSKNASVNTCCVNDSEGRGELPSLGTNHRCVYAWVKQAWSVAACPEAWKHPLSLALRFYNKVRAASEIDADFPASSIVTSDCPEERGTEVSVLPRALLLSCPAPHMHRWTFCDSLLQRQPDAEDFSYPELVKVVWYKGVTYRLTHKNVNSIEIFPGDGSVFKSEGAHFGNYFTYYPSQEESEKREEKTYSVNNLPPDRPGNFFSVRSLIKQATRILQHCAKIRLSLSHNYRVCCWKMAPGVSVSTILPVLLKESLIPGVGRFLAYSDDKVHAVFLDGVTVTLNWHLSSSAEKKQVDQGLSFGWCRLTFPDGQDQLIPTEHPGAYERYVTSVISWCRGLTQTSPRQVPTHLSPALKENWSVASELEKIQKFNWLLENSGVLNLTSSKNEQCSGHCKSGSSETLLEATNEERVSVALKRTSEILQDIDRLLSLSRK", "sequence_length": 639, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e9c44186a82f7eac60aefdd4361c75189564786ab5b99cf2bcdd97d3e89def30", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UJC8.json", "taxon_id": "10090", "uniprot_accession": "Q3UJC8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-2nd-pf22833.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-2nd-pf22833.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-c-pf15016.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15016", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-c-pf15016.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-like-n-pf15025.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-like-n-pf15025.yaml" } ], "pfam_ids": [ "PF15016", "PF15025", "PF22833", "PF22834" ], "protein_name": "Uncharacterized protein C5orf34 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTAAEVRMVLYEDDSVQVNYADGSTLQLSPCGSEFLFEKAPPPSTHPLEQPERIRQRTHFVISNYREQLQRALDFRNSSATCPFLSESIIPSERKKRVFIDFSEVEWPSPDRDDCITYSESGIVKITSLDGHAYLCLPRSQHEFTVHFLCKVSQKPDSSVMPPETKNRVPKEELVGKTRNVCRSGRLSGQRLRNKENEPPRQLLTSKNASANIHCVSETEGREELPSPGTKRRYVHVWVKQSWSAASCPEEWKYPLSLGLRFYNKVPAASAADAEVPVSGIVTSDNPEERGTGVSVLPRALLLSCSAPHMHRWNFCDSLLQRQSDAEEYSYPELIKVVWYKGVTYRLTHKNVNSIEIFPGDGSVFKSEGTHFGNYFTYSSQDNSGKREEKTYSVNNLPPDRPGNLYSVRSLIKQATRILQHCAKIRLSLSHNYRVCCWRMAPGVNVSSILPVLLKESLIPGVGRFLAYSDDKVHAVFLDGVTLTLNWDLSSSAEKTQVDQGLRLRWCRLTFPDGQDQLIQTEHPGVYERYVTSVVTWCRRLTQTSSRHVSPRLSPVPEENWSVASELEKIQKFNWLLENSGVLNLTSGKKNEQCSSDHCKPGSSETLPEATNEESVSVALKRTSEVLQDIDYLLSLTRK", "sequence_length": 640, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99a7a9f69334df974463b046b975337becdf030f9ed3fbb2cf56313c46bc64bd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6AYM1.json", "taxon_id": "10116", "uniprot_accession": "Q6AYM1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-c-terminal-ipr027865.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027865", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-c-terminal-ipr027865.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-domain-ipr053900.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053900", "section": "canonical_examples", 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"commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/polo-box-4-pf22834.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22834", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/polo-box-4-pf22834.yaml" } ], "pfam_ids": [ "PF15016", "PF15025", "PF22833", "PF22834" ], "protein_name": "Uncharacterized protein C5orf34", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAELRMILYEDDSVQVQYVDGSTLQLSPCGSEFLFEKSPPVSAHPLEQPERIRQRTHFVISTYREQLQRALDFRNSSATCPFLSETIIPSERKKHIFIDITEVRWPSLDTDGTMIYMESGIVKITSLDGHAYLCLPRSQHEFTVHFLCKVSQKSDSSAVLSETNNKAPKDKLVEKTGKICIRGNLPGQRLKNKENEFHCQIMKSKETLKKMSCVNGTEGREELPSPGTKHTCVYTWVKQCWSVAACPEEWKYPLSLALHFHNKISNMSKIDAHITQSRFLTSDISEERGKVVSVLPRALSLSCPVPHLHRWNFCDSLLQRQSDEYSYPELVKMVWYKGVTYRLTHQNMNSIEIYSGDGSVFKSEGAYFGNYFTYYSIQEGSGKREEKTYSVNNLPPDRPGSPFTVGSLIKQATRILQHCVKMRLSLSHNYRICCWKMVPGINDSNILPLVLKESLIPSVGRFLAYSDDKVHAIFLDGITLTLNWNFSSPIEKRQVNQGLNLGWCKLTFPDGQEQLIQIEHPEPYERYVTTVTSWCRRLTQTSPREMPTHSSSSVLQENWSVASELEKIQKFNLLLENSGILNQISNKKNEQQSFDHYKPGSSETLLGEVNENRVSIALKKTSEILHDIDCLLSNSKK", "sequence_length": 638, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "07bb907d8c29021e34a9f562e5efe481cc86543ba2507b883dda33a5159fd87a", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q96MH7.json", "taxon_id": "9606", "uniprot_accession": "Q96MH7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15016", "short_name": "C5orf34_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/somatic-diversification-of-immunoglobulins-involved-in-immune-response-go0002208.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0002208", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/somatic-diversification-of-immunoglobulins-involved-in-immune-response-go0002208.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/shieldin-complex-subunit-1-c-terminal-domain-ipr053898.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/shieldin-complex-subunit-1-c-terminal-domain-ipr053898.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/shld1-c-pf15021.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15021", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/shld1-c-pf15021.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8IYI0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15021" ], "protein_name": "Shieldin complex subunit 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d64cb011207568d6dc8355d3da30399dd7315f98c708ea4f6b37838d9ad1ef43", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAARDATSGSLSEESSALDLPSACDIRDYVLQGPSQEANSEAFSSLEFHSFPYSSDVDPDTSNLNIEQNNSWTAENFWLDPAVKGQSEKEEDDGLRKSLDRFYEMFGHPQPGSANSLSASVCKCLSQKITQLRGQESQKYALRSFQMARVIFNRDGCSVLQRHSRDTHFYPLEEGSTSLDDEKPNPGLSKDITHFLLQQNVMKDL", "sequence_length": 205, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d64cb011207568d6dc8355d3da30399dd7315f98c708ea4f6b37838d9ad1ef43", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IYI0.json", "taxon_id": "9606", "uniprot_accession": "Q8IYI0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/somatic-diversification-of-immunoglobulins-involved-in-immune-response-go0002208.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0002208", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/somatic-diversification-of-immunoglobulins-involved-in-immune-response-go0002208.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/shieldin-complex-subunit-1-c-terminal-domain-ipr053898.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/shieldin-complex-subunit-1-c-terminal-domain-ipr053898.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/shld1-c-pf15021.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15021", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/shld1-c-pf15021.yaml" } ], "pfam_ids": [ "PF15021" ], "protein_name": "Shieldin complex subunit 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESQAATPSSLSGESCTLDLPAVCDTSSYEASQRVSQGSSNSLSSLESHPFLSSSTTDPDSNSLNTEQKGSWDSENFWLDPSSKGQLETNEEEDGLRKSLDRFYEAFAHPLPGSGDPLSASVCQCLSQTISELEGQESQRYALRSFQMAQVIFSRDGCSILQRHSRDTRFYPLEQEGSSVDDEEPTPGLSREVIRFLLEQTVMKDS", "sequence_length": 206, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "26e90ce29bc8d8514c658ce82bc45b83cd03112022145d47a32d54503cea2542", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D112.json", "taxon_id": "10090", "uniprot_accession": "Q9D112", "uniprot_release": "2026_03" } ], "pfam_id": "PF15021", "short_name": "SHLD1_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4522-pf15022.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15022", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4522-pf15022.yaml" } ], "pfam_ids": [ "PF15022" ], "protein_name": "Uncharacterized protein C4orf36 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYGLPRRNTVQNILKGSCYKIQEPWDLAELTKTWYSNLTNINLPFLGEIAFGSPMNLLAGQTKQDCPLPSMQTMALEKEYEAKRLAKLKSKENACKEMQVSLREKSVGLRRPLQPK", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c1f5f99230de9c19c43dcf15f5c85bca5e322246060ca7741c5ebff6469845ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6AY31.json", "taxon_id": "10116", "uniprot_accession": "Q6AY31", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4522-pf15022.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15022", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4522-pf15022.yaml" } ], "pfam_ids": [ "PF15022" ], "protein_name": "Uncharacterized protein C4orf36", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYGVPRKNTVKTILRGSCYNVQEPWDIALLAKTWSTNLANIKLPFLEEISFGGSVQLTKCTTIKDGLLPSAESIKLEREYEVKRLCKLKCQENTSKEIQLLLRERPAGLRRPLPSK", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb2c8b22a1d6ce80b52b3619ded83b80ecdc1d26ae9165b393abd7d8cda703ef", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96KX1.json", "taxon_id": "9606", "uniprot_accession": "Q96KX1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4522-pf15022.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15022", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4522-pf15022.yaml" } ], "pfam_ids": [ "PF15022" ], "protein_name": "Uncharacterized protein C4orf36 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYGLPRRNTVQTILKGSCYKVQEPWDLAELTKTWYTNLTNIRLPFLGEIVFGSPMNLLASQTKQECQFPSMQSMALEKEYEAKRLTKLKCQENVCKEIQASLREKKVGLRRPLQPK", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8f962298ef637659b0def5f035bda6048ec22725bba19fc0d4909a7cab42aba8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DAA3.json", "taxon_id": "10090", "uniprot_accession": "Q9DAA3", "uniprot_release": "2026_03" } ], "pfam_id": "PF15022", "short_name": "DUF4522", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4523-pf15023.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15023", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4523-pf15023.yaml" } ], "pfam_ids": [ "PF15023" ], "protein_name": "Testis expressed protein 56", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVDIDPEQLFTEKMPKNYAQPDVLNHTFDLLSNLHKLLPNHLVEVLHSYRSEEDKNKCEKPEFSGLEKILARHQLPKEISLSPKPSLMPSWRRRIINNISGNWKKCHLWQKSTYEPPMGTIVARWTKKNLQPTEDLKSVIQRLSALGPIISVTPSGRQSAVVVFRDITSACKAVSAFQSMSGGSMFQCSWQHRFMAKNKTWSRKCTSKVHLEKRESTVGEPQELHN", "sequence_length": 227, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "83510b0f7b30f7c4af8aa9a814a7b56895494355935f9f8db1129eb927307aa3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q497N7.json", "taxon_id": "10090", "uniprot_accession": "Q497N7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4523-pf15023.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15023", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4523-pf15023.yaml" } ], "pfam_ids": [ "PF15023" ], "protein_name": "Testis expressed protein 56", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNVNIDSEQLFTEEKPKDYAQPEVLCHTFELLSNLHKLLPNRTVEVLHSYRSEEDKRKCEKPEFSGRKILARHQLPKEINLSPKPSHVPSWKRKIINNISGNWKKCRLWQKSIYEPPMGTIIVRWTKKNLQPSEDLKSVIQRLSALGPIISVTPCGRESAVVVFRDAASACKAVSAFQTMSADSMFHCSWQHRFMSKNKTWSRRYPSKIHAEKKEKHP", "sequence_length": 218, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8cb8208c241998c85c804a06197b4e4e0da8d4eefc24f0373f593f7400ca47c9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6AXY2.json", "taxon_id": "10116", "uniprot_accession": "Q6AXY2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Macaca fascicularis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4523-pf15023.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15023", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4523-pf15023.yaml" } ], "pfam_ids": [ "PF15023" ], "protein_name": "Testis expressed protein 56", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRTASSSSSMMKFSLLDKKPKNYAQPEVLCHTFDTLSNLHKLLPNHLMETLYSYRSEEDKKKCENPELSGLERILARHELPKEINLTPKPNRMPLWKRKIINNVTDGWKKCHLLTRNTKEPPMSTIVVRWLKKNMQPTEDLKSVICRLSAFGPIQSVTVCGRQSAIVAFKDMTSACNAVSAFQSRTPGTMFQCSWQQRFMSKDKIYSKKCTQKTQPKECKQETEKTANNS", "sequence_length": 230, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "18daa829e021b4447984b8beebe5b1a1c9153bb71eea647e59c4c243891bc4f3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q95JI7.json", "taxon_id": "9541", "uniprot_accession": "Q95JI7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15023", "short_name": "DUF4523", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-c-terminal-ipr027865.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027865", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-c-terminal-ipr027865.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-domain-ipr053900.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-domain-ipr053900.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-n-terminal-ipr027830.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027830", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-n-terminal-ipr027830.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-second-domain-ipr053899.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053899", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-second-domain-ipr053899.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-2nd-pf22833.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-2nd-pf22833.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-c-pf15016.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15016", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-c-pf15016.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-like-n-pf15025.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-like-n-pf15025.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/polo-box-4-pf22834.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22834", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/polo-box-4-pf22834.yaml" } ], "pfam_ids": [ "PF15016", "PF15025", "PF22833", "PF22834" ], "protein_name": "Uncharacterized protein C5orf34 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGMAAEVRMVLYEDDSVQVHYACGSTLQLSPCGSEFLFEKALPPSTHPLEQPERIRQRTHFVISNYREQLQRALDFRNSSATCPFLSESIIPPERKKHIFIDFSEVEWPSLDRDDCIMYSESGVVKITSLDGHAYLCLPRSQHEFTVHFLCKVSQRPDSSGILSETQNQDPKNKLVEKTRKVCRCGNLSEQTLRNKENEPPYQILKSKNASVNTCCVNDSEGRGELPSLGTNHRCVYAWVKQAWSVAACPEAWKHPLSLALRFYNKVRAASEIDADFPASSIVTSDCPEERGTEVSVLPRALLLSCPAPHMHRWTFCDSLLQRQPDAEDFSYPELVKVVWYKGVTYRLTHKNVNSIEIFPGDGSVFKSEGAHFGNYFTYYPSQEESEKREEKTYSVNNLPPDRPGNFFSVRSLIKQATRILQHCAKIRLSLSHNYRVCCWKMAPGVSVSTILPVLLKESLIPGVGRFLAYSDDKVHAVFLDGVTVTLNWHLSSSAEKKQVDQGLSFGWCRLTFPDGQDQLIPTEHPGAYERYVTSVISWCRGLTQTSPRQVPTHLSPALKENWSVASELEKIQKFNWLLENSGVLNLTSSKNEQCSGHCKSGSSETLLEATNEERVSVALKRTSEILQDIDRLLSLSRK", "sequence_length": 639, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e9c44186a82f7eac60aefdd4361c75189564786ab5b99cf2bcdd97d3e89def30", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UJC8.json", "taxon_id": "10090", "uniprot_accession": "Q3UJC8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-2nd-pf22833.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-2nd-pf22833.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-c-pf15016.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15016", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-c-pf15016.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-like-n-pf15025.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-like-n-pf15025.yaml" } ], "pfam_ids": [ "PF15016", "PF15025", "PF22833", "PF22834" ], "protein_name": "Uncharacterized protein C5orf34 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTAAEVRMVLYEDDSVQVNYADGSTLQLSPCGSEFLFEKAPPPSTHPLEQPERIRQRTHFVISNYREQLQRALDFRNSSATCPFLSESIIPSERKKRVFIDFSEVEWPSPDRDDCITYSESGIVKITSLDGHAYLCLPRSQHEFTVHFLCKVSQKPDSSVMPPETKNRVPKEELVGKTRNVCRSGRLSGQRLRNKENEPPRQLLTSKNASANIHCVSETEGREELPSPGTKRRYVHVWVKQSWSAASCPEEWKYPLSLGLRFYNKVPAASAADAEVPVSGIVTSDNPEERGTGVSVLPRALLLSCSAPHMHRWNFCDSLLQRQSDAEEYSYPELIKVVWYKGVTYRLTHKNVNSIEIFPGDGSVFKSEGTHFGNYFTYSSQDNSGKREEKTYSVNNLPPDRPGNLYSVRSLIKQATRILQHCAKIRLSLSHNYRVCCWRMAPGVNVSSILPVLLKESLIPGVGRFLAYSDDKVHAVFLDGVTLTLNWDLSSSAEKTQVDQGLRLRWCRLTFPDGQDQLIQTEHPGVYERYVTSVVTWCRRLTQTSSRHVSPRLSPVPEENWSVASELEKIQKFNWLLENSGVLNLTSGKKNEQCSSDHCKPGSSETLPEATNEESVSVALKRTSEVLQDIDYLLSLTRK", "sequence_length": 640, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99a7a9f69334df974463b046b975337becdf030f9ed3fbb2cf56313c46bc64bd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6AYM1.json", "taxon_id": "10116", "uniprot_accession": "Q6AYM1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-c-terminal-ipr027865.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027865", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-c-terminal-ipr027865.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-domain-ipr053900.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-domain-ipr053900.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-n-terminal-ipr027830.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027830", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-n-terminal-ipr027830.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-second-domain-ipr053899.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053899", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-second-domain-ipr053899.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-2nd-pf22833.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-2nd-pf22833.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-c-pf15016.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15016", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-c-pf15016.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-like-n-pf15025.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-like-n-pf15025.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/polo-box-4-pf22834.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22834", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/polo-box-4-pf22834.yaml" } ], "pfam_ids": [ "PF15016", "PF15025", "PF22833", "PF22834" ], "protein_name": "Uncharacterized protein C5orf34", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAELRMILYEDDSVQVQYVDGSTLQLSPCGSEFLFEKSPPVSAHPLEQPERIRQRTHFVISTYREQLQRALDFRNSSATCPFLSETIIPSERKKHIFIDITEVRWPSLDTDGTMIYMESGIVKITSLDGHAYLCLPRSQHEFTVHFLCKVSQKSDSSAVLSETNNKAPKDKLVEKTGKICIRGNLPGQRLKNKENEFHCQIMKSKETLKKMSCVNGTEGREELPSPGTKHTCVYTWVKQCWSVAACPEEWKYPLSLALHFHNKISNMSKIDAHITQSRFLTSDISEERGKVVSVLPRALSLSCPVPHLHRWNFCDSLLQRQSDEYSYPELVKMVWYKGVTYRLTHQNMNSIEIYSGDGSVFKSEGAYFGNYFTYYSIQEGSGKREEKTYSVNNLPPDRPGSPFTVGSLIKQATRILQHCVKMRLSLSHNYRICCWKMVPGINDSNILPLVLKESLIPSVGRFLAYSDDKVHAIFLDGITLTLNWNFSSPIEKRQVNQGLNLGWCKLTFPDGQEQLIQIEHPEPYERYVTTVTSWCRRLTQTSPREMPTHSSSSVLQENWSVASELEKIQKFNLLLENSGILNQISNKKNEQQSFDHYKPGSSETLLGEVNENRVSIALKKTSEILHDIDCLLSNSKK", "sequence_length": 638, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "07bb907d8c29021e34a9f562e5efe481cc86543ba2507b883dda33a5159fd87a", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q96MH7.json", "taxon_id": "9606", "uniprot_accession": "Q96MH7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15025", "short_name": "C5orf34-like_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/glyco-transf-18-pf15024.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15024", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/glyco-transf-18-pf15024.yaml" } ], "pfam_ids": [ "PF15024", "PF15027" ], "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFFSPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYDLKKTLAVLLDNILQRIGKLESKVDNLVNGTGANSTNSTTAVPSLVSLEKINVADIINGVQEKCVLPPMDGYPHCEGKIKWMKDMWRSDPCYADYGVDGTSCSFFIYLSEVENWCPRLPWRAKNPYEEADHNSLAEIRTDFNILYGMMKKHEEFRWMRLRIRRMADAWIQAIKSLAEKQNLEKRKRKKILVHLGLLTKESGFKIAETAFSGGPLGELVQWSDLITSLYLLGHDIRISASLAELKEIMKKVVGNRSGCPTVGDRIVELIYIDIVGLAQFKKTLGPSWVHYQCMLRVLDSFGTEPEFNHASYAQSKGHKTPWGKWNLNPQQFYTMFPHTPDNSFLGFVVEQHLNSSDIHHINEIKRQNQSLVYGKVDSFWKNKKIYLDIIHTYMEVHATVYGSSTKNIPSYVKNHGILSGRDLQFLLRETKLFVGLGFPYEGPAPLEAIANGCAFLNPKFNPPKSSKNTDFFIGKPTLRELTSQHPYAEVFIGRPHVWTVDLNNREEVEDAVKAILNQKIEPYMPYEFTCEGMLQRINAFIEKQDFCHGQVMWPPLSALQVKLAEPGQSCKQVCQESQLICEPSFFQHLNKEKDLLKYKVICQSSELYKDILVPSFYPKSKHCVFQGDLLLFSCAGAHPTHQRICPCRDFIKGQVALCKDCL", "sequence_length": 740, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7583d9db66daa9975afe98514b76398ea3369a8d01da74a08e75e5f5783733ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q08834.json", "taxon_id": "10116", "uniprot_accession": "Q08834", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/alpha-1-6-mannosylglycoprotein-6-beta-n-acetylglucosaminyltransferase-activity-go0030144.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030144", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/alpha-1-6-mannosylglycoprotein-6-beta-n-acetylglucosaminyltransferase-activity-go0030144.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glycosyltransferase-family-18-catalytic-domain-ipr026116.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR026116", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycosyltransferase-family-18-catalytic-domain-ipr026116.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mgt5a-like-n-terminal-ipr027833.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mgt5a-like-n-terminal-ipr027833.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mgt5a-n-pf15027.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mgt5a-n-pf15027.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/glyco-transf-18-pf15024.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15024", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/glyco-transf-18-pf15024.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q09328", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15024", "PF15027" ], "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a0bc46cfe27d8de9e3f8de1e5b5615564b4a84e5ccfab0089da27031dfd1630a", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYDLKKTLAVLLDNILQRIGKLESKVDNLVVNGTGTNSTNSTTAVPSLVALEKINVADIINGAQEKCVLPPMDGYPHCEGKIKWMKDMWRSDPCYADYGVDGSTCSFFIYLSEVENWCPHLPWRAKNPYEEADHNSLAEIRTDFNILYSMMKKHEEFRWMRLRIRRMADAWIQAIKSLAEKQNLEKRKRKKVLVHLGLLTKESGFKIAETAFSGGPLGELVQWSDLITSLYLLGHDIRISASLAELKEIMKKVVGNRSGCPTVGDRIVELIYIDIVGLAQFKKTLGPSWVHYQCMLRVLDSFGTEPEFNHANYAQSKGHKTPWGKWNLNPQQFYTMFPHTPDNSFLGFVVEQHLNSSDIHHINEIKRQNQSLVYGKVDSFWKNKKIYLDIIHTYMEVHATVYGSSTKNIPSYVKNHGILSGRDLQFLLRETKLFVGLGFPYEGPAPLEAIANGCAFLNPKFNPPKSSKNTDFFIGKPTLRELTSQHPYAEVFIGRPHVWTVDLNNQEEVEDAVKAILNQKIEPYMPYEFTCEGMLQRINAFIEKQDFCHGQVMWPPLSALQVKLAEPGQSCKQVCQESQLICEPSFFQHLNKDKDMLKYKVTCQSSELAKDILVPSFDPKNKHCVFQGDLLLFSCAGAHPRHQRVCPCRDFIKGQVALCKDCL", "sequence_length": 741, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a0bc46cfe27d8de9e3f8de1e5b5615564b4a84e5ccfab0089da27031dfd1630a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q09328.json", "taxon_id": "9606", "uniprot_accession": "Q09328", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mgt5a-like-n-terminal-ipr027833.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mgt5a-like-n-terminal-ipr027833.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mgt5a-n-pf15027.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mgt5a-n-pf15027.yaml" } ], "pfam_ids": [ "PF15027" ], "protein_name": "Coiled-coil domain-containing protein 126", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFRTISRKNMSQKLSFLLLVFGLIWGLMLLHYTLQQPRRQSSVKLREQILDLSKRYVKALAEESRSTADVDSGASMAGYADLKRTIAVLLDDILQRLVKLESKVDYIVVNGSATNTTNGTNGNLVPVTTNKRTSVSGSVR", "sequence_length": 140, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "273a271278f0c48c27fc0088af469c674e7333cf682861ed8a588bef732fce6f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BIS8.json", "taxon_id": "10090", "uniprot_accession": "Q8BIS8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/alpha-1-6-mannosylglycoprotein-6-beta-n-acetylglucosaminyltransferase-activity-go0030144.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0030144", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/alpha-1-6-mannosylglycoprotein-6-beta-n-acetylglucosaminyltransferase-activity-go0030144.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/glycosyltransferase-family-18-catalytic-domain-ipr026116.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR026116", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/glycosyltransferase-family-18-catalytic-domain-ipr026116.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mgt5a-like-n-terminal-ipr027833.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mgt5a-like-n-terminal-ipr027833.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mgt5a-n-pf15027.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mgt5a-n-pf15027.yaml" } ], "pfam_ids": [ "PF15024", "PF15027" ], "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFFSPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRDVVDGPYAGVMTAYDLKKTLAVLLDNILQRIGKLESKVDNLVNGTGANSTNSTTAVPSLVSLEKINVADIINGVQEKCVLPPMDGYPHCEGKIKWMKDMWRSDPCYADYGVDGTSCSFFIYLSEVENWCPRLPWRAKNPYEEADHNSLAEIRTDFNILYGMMKKHEEFRWMRLRIRRMADAWIQAIKSLAEKQNLEKRKRKKILVHLGLLTKESGFKIAETAFSGGPLGELVQWSDLITSLYLLGHDIRISASLAELKEIMKKVVGNRSGCPTVGDRIVELIYIDIVGLAQFKKTLGPSWVHYQCMLRVLDSFGTEPEFNHASYAQSKGHKTPWGKWNLNPQQFYTMFPHTPDNSFLGFVVEQHLNSSDIHHINEIKRQNQSLVYGKVDSFWKNKKIYLDIIHTYMEVHATVYGSSTKNIPSYVKNHGILSGRDLQFLLRETKLFVGLGFPYEGPAPLEAIANGCAFLNPKFNPPKSSKNTDFFIGKPTLRELTSQHPYAEVFIGRPHVWTVDLNNREEVEDAVKAILNQKIEPYMPYEFTCEGMLQRINAFIEKQDFCHGQVMWPPLSALQVKLAEPGQSCKQVCQESQLICEPSFFQHLNKEKDLLKYKVTCQSSELYKDILVPSFYPKSKHCVFQGDLLLFSCAGAHPTHQRICPCRDFIKGQVALCKDCL", "sequence_length": 740, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "14571703e86cc19f0202435e618806dbd2b42bd74b85c7c5ea1b785bb0599ee9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R4G6.json", "taxon_id": "10090", "uniprot_accession": "Q8R4G6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mgt5a-like-n-terminal-ipr027833.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mgt5a-like-n-terminal-ipr027833.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mgt5a-n-pf15027.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mgt5a-n-pf15027.yaml" } ], "pfam_ids": [ "PF15027" ], "protein_name": "Coiled-coil domain-containing protein 126", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFFTISRKNMSQKLSLLLLVFGLIWGLMLLHYTFQQPRHQSSVKLREQILDLSKRYVKALAEENKNTVDVENGASMAGYADLKRTIAVLLDDILQRLVKLENKVDYIVVNGSAANTTNGTSGNLVPVTTNKRTNVSGSIR", "sequence_length": 140, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2ee0b64ad2ad6f3f46ddd6ff7c8aba7866703f27de667acaa256ab06626aa9c4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96EE4.json", "taxon_id": "9606", "uniprot_accession": "Q96EE4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15027", "short_name": "MGT5A_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem174-pf15029.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15029", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem174-pf15029.yaml" } ], "pfam_ids": [ "PF15029" ], "protein_name": "Transmembrane protein 174", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEQGSGRLEDFPVNVFSVTPYTPSTADIQVSDDDKAGATLLFSGIFLGLVGITFTVMGWIKYQGVSHFEWTQLLGPVLLSVGVTFILIAVCKFKMLSCQLCKESEERVPDSEQTPGGPSFVFTGINQPITFHGATVVQYIPPPYGSPEPMGINTSYLQSVVSPCGLITSGGAAAAMSSPPQYYTIYPQDNSAFVVDEGCLSFTDGGNHRPNPDVDQLEETQLEEEACACFSPPPYEEIYSLPR", "sequence_length": 243, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0df90dcf320c31dddb0f34856a198d56665fcd5d96f574bb5e705191a799e151", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WUU8.json", "taxon_id": "9606", "uniprot_accession": "Q8WUU8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem174-pf15029.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15029", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem174-pf15029.yaml" } ], "pfam_ids": [ "PF15029" ], "protein_name": "Transmembrane protein 174", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEHSSNRPEDFPLNVFSVTPYTPSTADIQVSDDDKAGATLLFSGIFLGLVGITFTVMGWIKYQGVSHFEWTQLLGPILLSVGVTFILIAVCKFKMLSCQLCSDNEERVPDSDQTSGGQSFVFTGINQPITFHGATVVQYIPPPYGSQEPLGMNATYLQPMMNPCGLIPPSGAAAAAPSPPQYYTIYPQDNAAFVESEGFSPFVGTGYDRPDSDADQLEGTELEEEDCVCFSPPPYEEIYALPR", "sequence_length": 243, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e783c477a0041e6b1e2620406bba7b51ddbff7b3343805cf0a4bdd003a37a509", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DCX7.json", "taxon_id": "10090", "uniprot_accession": "Q9DCX7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15029", "short_name": "TMEM174", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4527-pf15030.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4527-pf15030.yaml" } ], "pfam_ids": [ "PF15030" ], "protein_name": "Uncharacterized protein C4orf50", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPTAKGRTEESFSYVIRAPSSEGFDIMNVDVKIDTSWIFQDMEDSAEERECLQEEAAGRPDMDMGALRRQLESSEQKLSAAEDKYVTSESGLRSRIQELELSERKLLRKVDQLSTHVAQERSAWLQAQEKLAALQGELASQIREESVARRQQWRLRRLQERLRRKDEALGQQAAALERCRRTQRRQLGLVREQERVLREQVQRLERNVRRLCRAAGLLLAQWDTAAPGSQGATEAAAELRALQARAERSEREREEAARSLQEHRATERQLRGQLEELRCCIYGLKLSEIGLQGQVEDLAQQNQCLREELGAQAPIGHCSLDALGCVQGDSLPLPREEALDPCRSQDWRNSLRSNDAPRQRAPAGQSPEGPCTWSRIRPGRASSVLAPGPETTSELPRDLAGSNREQLTLAEPSLDEQILLLVCGCPPEECLDESLLRMDLAWISENLAADPAAEAFLLVQTSALPLWGPAGDSASWRPLLLQEVPSDGQKIQEELATRSPPPPKATGHPGWDCHQTRGRGASLFHEAPYISNHPFLKKHPKDLKDTWNNGGGSLAGRTEEGKARGTLGRKGKNLGDKYQLSQESHQNLSLENGAGAAEDVQDQNGASETKAATCRPGSWQEFLMPLLQGEASVSKEGPESLSRRERVEGYVWGLRGGLSSENEEVAPPATFSRAHETKEPWPTDSQLLAGKVRATGRTARGKEENQVWLGNALLLQGGSLEDKGLEEEDEMPHQEASGLGCRGAPEEPDSQEHESKEMLFFAGETGLPLFPRFALSVEGAEPTDHGHPQAVSKGHNRCALTIDELAQDVEACFQQLSTLQPGSRGWQCSASACRGENWSFAQKWHSGWERAHSQQVWGNWGICSNEEAKSKESGEGDKPGKTTALGTSEVPGNPGTLPHWDEASPNPPQGPAEPWGALERVRSRFHQLISGLKKQRSQILHDNTKLHGDQERFHERVCALEREREREVTKISRLERDNHRLVGDISQLKKELDQYLQAISDLEDCNGKSYCKILELEEENETLKGNLGQLQKATSESVRKSKDTMEQVTLENWKLQTLISELGVSYKELIKDIVLGIEDMIRALSGENEHLLRRVHVLEREVTLQRSTDQGRLVRGREHLQGKAKMHALDKEVQVTPLTGQLLSRACGPPLEEEMSLAAGQTGPSTGTGNSRRGADSPPPSLVWRNTGVANALQGNVSGAEVKEAHLEKEEKRPRCSVAQGQALSSLSNGPMLRDSEAEVTEEDPRLRAQQLHHRVLTLQCQLRDQGAAHQASLDEATRLQEELQAKLEELQKKQHEAKLAVTPLKAKIASLVRKCRERNRLITHLLQELHRHGLGNLLLSELAQNMLNDVALAEYTATFLAPGVPETSHHLDVKSEMTAALRAQTYLLNPEMDSVLQSSLSSESWPIPEPEWPAQTAQLDSLKLPLSLVSTLDPGTCLAAVTVEPGLPAQRLQEKGGMPCPALQVDNVPAPSELLSPARILAFHQELRQSICSNSQVHKSPLELEM", "sequence_length": 1508, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "55398bb7883bdfc0c9f227225dde64032bc92111fa7524a540843407fbc3582c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZRC1.json", "taxon_id": "9606", "uniprot_accession": "Q6ZRC1", "uniprot_release": "2026_03" } ], "pfam_id": "PF15030", "short_name": "DUF4527", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4528-pf15031.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15031", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4528-pf15031.yaml" } ], "pfam_ids": [ "PF15031" ], "protein_name": "Uncharacterized protein C15orf61", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEALRRAHEVALRLLLCRPWASRAAARPKPSASEVLTRHLLQRRLPHWTSFCVPYSAVRNDQFGLSHFNWPVQGANYHVLRTGCFPFIKYHCSKAPWQDLARQNRFFTALKVVNLGIPTLLYGLGSWLFARVTETVHTSYGPITVYFLNKEDEGAMY", "sequence_length": 157, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "41eb41d4c7c44f244134ac178cf1f2af807105d03b7fa0888c81b17c35bf17a8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A6NNL5.json", "taxon_id": "9606", "uniprot_accession": "A6NNL5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4528-pf15031.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15031", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4528-pf15031.yaml" } ], "pfam_ids": [ "PF15031" ], "protein_name": "Uncharacterized protein C15orf61 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEALRRAHEATLRLLLCRPWASGAASRPKPRASEVLTQHLLQRRLPHWTSFCVPYSAVHNDQFGLSHFNWPVLGANYHVLRTGCFPFIKYHCSKAPWQDLAPQDRFFTALKVINLGIPTLLYGLGSWLFARVTETVHTSYGPITIYFLNKEDEGAMY", "sequence_length": 157, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cb983cdf6199ac4abfb5c21dfa13cc9253eb48833b17dd8034585317c3016b70", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q0VG49.json", "taxon_id": "10090", "uniprot_accession": "Q0VG49", "uniprot_release": "2026_03" } ], "pfam_id": "PF15031", "short_name": "DUF4528", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4529-pf15032.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15032", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4529-pf15032.yaml" } ], "pfam_ids": [ "PF15032" ], "protein_name": "Uncharacterized protein C16orf46 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLCEESETFLENKENKKIEDAEETALTFHCPDERSERNHVCCLLGVSELTLEEDGRASEFTISTGWEEAVHGWGRTSPTACIWSKKKVRRGRVGEGTSGGSNCLFCMSLSQGSLEPRPLSAAGKLEEAAVAEVSSQKNWGSEKNWNSPSQGPASREPNKLCFPTYLHGEKKSLQMKEFIWCMEEWGIPEAVSSKACRNPSSSTDQGLSISDAVATKALVVLPPLKSSSHNLDSLSKKSRNIFWQPEEKVLGVEKDECMACPDELKGVDGKGEKAHFELASRLKVTNILPFPPTVTRTHLLSAESQRCCLHWSLLPQKSSVFPPNPTNIHYLATLQVLGQQGGQNCRTRLKAKEAKPPRTTPKHIVTEAKQESRPHVLESKVFPKPLLPSLTVSRVVIPVSTHRVL", "sequence_length": 406, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a63f9fe5092d8007a262e6fd607bf0b4fd5c413378178d77843393d50750ae22", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6AXX2.json", "taxon_id": "10116", "uniprot_accession": "Q6AXX2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4529-pf15032.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15032", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4529-pf15032.yaml" } ], "pfam_ids": [ "PF15032" ], "protein_name": "Uncharacterized protein C16orf46", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLCQKNETDLENAENNEIQFTEETEPTYTCPDGKSEKNHVYCLLDVSDITLEQDEKAKEFIIGTGWEEAVQGWGRTSPAACIWPRKIPKKARVGEGACSDCLVCVNLSHWSLQTKPPTEGGPEKDQSSPSQTQAAPQGPSTASRAISDICFPTYFRAEKKSLQIKEFIWCNKDWAIPGTNRGKASGNPSGGAHRGLSIPGPLTSRALLVLPPLKASLSNALDVLGKKSKNSFLQSEEKVLDVEKDGCVAYAYGLKTADGKGEKRASELAKHPMVNDTPSSPSPAAQISLLTDPEQRCLHWSLLSEKNLACPPDPSNVRYLAALQLLQKRGVQSYKSKFKAKEPRSPVITRKHVLPKAKQENRPQMLETKVFPRPVLPSLTVSRVIIPVSTHRIL", "sequence_length": 395, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c5fcaa4a63d3438d629159577087b2c37ad6ba71585972adad6214506b25b6e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P387.json", "taxon_id": "9606", "uniprot_accession": "Q6P387", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4529-pf15032.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15032", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4529-pf15032.yaml" } ], "pfam_ids": [ "PF15032" ], "protein_name": "Uncharacterized protein C16orf46 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVCEESETFLENTENQKIEATEETAPTLHCPDEKSERSHVCCLLGVSDLTLEEDGRASECAISTGWEEAVHGWGRTSPTACIWSKKKVKRGRAREGTNGGNDCLFCMSLSQGSLEPRSLLEVGKLEAGAEAEVSTQKSWSSEKNWSGLSQGPGTASREQSNKLCIPTDVHGEKKSLQLKEFIWCMEEWPMPETVSSKAGRNPSGSPEQGLSTPDSLAAKALVVLPPLKSSPHNLDVLSKKSRNIFWQPEEKVLRVEKDDCMACADGLKGVDGKGEKRHFELASHVKVTNVLPFPPTAAQTHLLSAESQRCCLHWSLLPQKSTVFPPNPSDIHYLATLQVLGQQGKQSCRTRLKTKDTKPPRTTAKHIITEAKQQNRPHVLESKVFPKPLLPSLTVSRVVIPVSTHRVL", "sequence_length": 409, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e871e6b2a12c12706b6012b8e9e183db9dd214eaff5269ff4343068124ea986e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BHB7.json", "taxon_id": "10090", "uniprot_accession": "Q8BHB7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15032", "short_name": "DUF4529", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4530-pf15039.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15039", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4530-pf15039.yaml" } ], "pfam_ids": [ "PF15039" ], "protein_name": "Glutamate-rich protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELWRQLNQAGLVPPGLGPPPQALREVSPVEIPGQTLRTAGADTGGACDSLLWIREELGNLRRVDVQLLGQLCSLGLEMGALREELVTILEEEEESSKEEEEDQEPQRKQEEEHLEACPAPHPPDFEMMI", "sequence_length": 130, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "202241f651f509ab064bfe77dea00dba569bf2d9f54ac4d5f1f0b73dc2aa0379", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A6NGS2.json", "taxon_id": "9606", "uniprot_accession": "A6NGS2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4530-pf15039.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15039", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4530-pf15039.yaml" } ], "pfam_ids": [ "PF15039" ], "protein_name": "Glutamate-rich protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELWAQLKQAGLESSGLGPLPQALRMPPPEGNPGQALMSSGAEFGGARELLLWIWEELGNLRRVDVQLLGQLCDLGLEMGTLREELVTILEEEEEDDDEEEQEEEGEGKNCVEENKGLQGKQGEKCSGNPYPAQRLPDFEMTI", "sequence_length": 143, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "149a7ac545d4a64cb206a8220b8233b48669861fa1f9628d17498bef0bb06f54", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C7N2.json", "taxon_id": "10116", "uniprot_accession": "P0C7N2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4530-pf15039.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15039", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4530-pf15039.yaml" } ], "pfam_ids": [ "PF15039" ], "protein_name": "Glutamate-rich protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPWVQLKQAGLEPSGLGPLPKALRVPPPEGNPGQALMSSGAELGGARELILWIWEELGNLRRVDVQLLGQLCDLGLEMGTFREELVTILEEEEEEEEQEEKSCVEENKGPEEKQDEERSRSSYPAQRLPDFGMTI", "sequence_length": 136, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9b6b03b8e5f34b928303e59eed5ca8be222de477b658dc2c5dd9179807138cc7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UNU4.json", "taxon_id": "10090", "uniprot_accession": "Q3UNU4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15039", "short_name": "DUF4530", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tkti1-pf15041.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15041", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tkti1-pf15041.yaml" } ], "pfam_ids": [ "PF15041" ], "protein_name": "Tektin bundle-interacting protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENVRREATRPSVPSGTLELYFPDHLYRNDYVSLEGPRWAPAIKQAVRWKFTPMGRDAAGQVWFTGLTNSEPGDAWYKLPRALDTPYREAHTRWHGCFQSRQRGLPPAYTQHLREMAFWDPAITAQYLNSGPRWGCMQWRDRQIRGKEFVVTRNQFGAKLPWRSDYVPLLSLPQRPRFTAQDFRQRGLQRPCPAIGQPPPAFTPAL", "sequence_length": 206, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "653e7420f6c955e7aeb0d4b59dc26f3583f2fdbc2fe7f7f7d36634389fd683ed", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6H6Q4.json", "taxon_id": "10090", "uniprot_accession": "A6H6Q4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tkti1-pf15041.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15041", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tkti1-pf15041.yaml" } ], "pfam_ids": [ "PF15041" ], "protein_name": "Tektin bundle-interacting protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQTLRQEAARPCIPSGTLEASFPAPLYSDDYLSLEGSRWPPAIRQATRWKYTPMGRDAAGQLWYTGLTNSDAWEAWYNLPRAPASPFREAYNRWHSCYQHRECSMPSAYTQHLRETAWHDPIVPAQYQAPSTRWGSALWKDRPIRGKEYVLNRNRYGVEPLWRASDYVPSLSAPQRPPGTTQNYREWVLEPYCPSTCQRSPPSLTPTPR", "sequence_length": 209, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "545592fee98c77e6d67010a82fb70085638d82a1796e18fca8ba6aafd21ff12e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A6NCJ1.json", "taxon_id": "9606", "uniprot_accession": "A6NCJ1", "uniprot_release": "2026_03" } ], "pfam_id": "PF15041", "short_name": "TKTI1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4532-pf15046.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15046", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4532-pf15046.yaml" } ], "pfam_ids": [ "PF15046" ], "protein_name": "Testis-expressed protein 52", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASNRQRSLRGPSHPSHMEEPFLQMVQASESLPPSQTWAQREFFLPSESWEFPGFTRQAYHQLALKLPPCTDMKSKVRQRLIHPWKGGAQHTWGFHTWLDVCRLPATFPTQPDRPYDSNVWRWLTDSNAHRCPPTEHPIPPPSWMGQNSFLTFIHCYPTFVDMKRKKQVIFRTVKELKEVEKLKLRSEARAPPLDAQGNIQPPASFKKYRHISAGGRFEPQGLQLMPNPFPNNFARSWPCPNPLPHYQEKVLKLALLPSAPLSQDLIRDFQTLIKDRTALPLHHLSKAQASKSPARKRKRRPGHF", "sequence_length": 305, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "16fac6169622ffd66b22306a1bbe86708f72e1c78d605bfe6976b397f8a975aa", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A6NCN8.json", "taxon_id": "9606", "uniprot_accession": "A6NCN8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4532-pf15046.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15046", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4532-pf15046.yaml" } ], "pfam_ids": [ "PF15046" ], "protein_name": "Testis-expressed protein 52", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANIPKKTSLQKSSLSQVSRTREPFLKMIHAKESSPIYQTWTQREFLLPKETKEFPGFTLQDYHKLALKQPPCTELKSKVRHQVLYPSKDAAEHTWGFHTWLDVGRLPATFPTRPDVPYDSNVWRHLTHANAHRLPAAQPGIPPPSWMGPHSFLSFISASPIVVDLKRRKQIIVRTVKELKEVEKLKLRSELRAPPLDANGNILPPPNFKKYQYISTGGRLVPWGLQFLPNPIPNNICKSWPCPNHQPHYQEKVLKLARLPTVPLSKDLVKDYQALIKDRLALPVHYLSKARPAKTPEGKRKRRPGYV", "sequence_length": 308, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ab798ba0ac98caca1874057f906902fd61f82674d7569a745f6379a43b73b837", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3TTI8.json", "taxon_id": "10090", "uniprot_accession": "Q3TTI8", "uniprot_release": "2026_03" } ], "pfam_id": "PF15046", "short_name": "DUF4532", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4533-pf15047.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15047", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4533-pf15047.yaml" } ], "pfam_ids": [ "PF15047" ], "protein_name": "Single-pass membrane and coiled-coil domain-containing protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQSDFLYPENPKRREEVNRLHQQLLDCLSDSFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCDLIIQAIMKIQKELQKVDEALKDKLEPTLYRKLQDIKEKETDKIAIVQKVISVILGEATSAASAVAVKLVGSNVTTGIINKLVTVLAQIGASLLGSIGVAVLGLGIDMIVRAILGAVEKTQLQAAIKSYEKHLVEFKSASEKYNHAITEVINTVKHQMK", "sequence_length": 225, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fdfde283df01be47f1e5d3650397894691cd0cd49ad8fb3d3e16d76bc3d62467", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2RU48.json", "taxon_id": "9606", "uniprot_accession": "A2RU48", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4533-pf15047.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15047", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4533-pf15047.yaml" } ], "pfam_ids": [ "PF15047" ], "protein_name": "Uncharacterized protein C12orf60", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSESEKDKERLIQAAKMFFFHVQDLASVINTLTELFSRSMNTQILLMAVKNNSYIKDFFEQMLKIFKEMQSVVDARHDKIQKESLCSKVAMAMCSVVQKSTNVEELHQSAKEVFKSAHTPVIISVLNSSNILGSLESSLSHLMKFPIMNLQLSDFYTEDTKEQSDVTTSERTRSPPGSSKTTMIDTLKKLQDVLKTEDSKNPTKSAADLLEQIVKAMGPILEILQKAIKTMEMNISVFKKASDK", "sequence_length": 245, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2bd66eb2ba2370f19a53e7eb388f993684f1fecb04b8027078bfcaad64c37b89", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5U649.json", "taxon_id": "9606", "uniprot_accession": "Q5U649", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4533-pf15047.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15047", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4533-pf15047.yaml" } ], "pfam_ids": [ "PF15047" ], "protein_name": "Single-pass membrane and coiled-coil domain-containing protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQSDFLYPQNPRRRQEVNRLHQQLLDCLSDSFQVTNKLTGVLNTHLGCRLAFIEMKSDGTIKENCDIIIQAMTKIQKELQKIDEALKDQLEPTLYRKLQDIKERETEKIAIVQKVISVILGEATSAASAVAVKLVGSSVTTGIISKLVSVLAHIGTSLLGSIGVAVLSLGIDMIIQAILGAVERTQLQAAIKSYEKHLEEFKAASAKYHHAITEVATAVKRQLR", "sequence_length": 225, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "00728917db68ba4aad82f4e2a32eff88d9c7bc068d70e7ebf3ea43315263d30d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BQM7.json", "taxon_id": "10090", "uniprot_accession": "Q8BQM7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15047", "short_name": "DUF4533", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4534-pf15049.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15049", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4534-pf15049.yaml" } ], "pfam_ids": [ "PF15049" ], "protein_name": "Transmembrane protein 217B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNVRMFSLMVGIFSVLNTTQFFIFDLNQKTHICYEAKFSIYVDSKSELVTWTLFHRANISTGLSLTTIIIGCFLFYCIHKNIYMGLLIYAMWIITYELINFSIVLLLNGIIKDHFKTLSYLHWIFQISHMLLHFFCLPFIVKHAYNLYKESQTVGRKRRHRLCSTIAVNS", "sequence_length": 170, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "10a1cda8ace127940d4baaf456a25b724cb2e83c93d615a3a5a194bc44063d1a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A494BZU4.json", "taxon_id": "9606", "uniprot_accession": "A0A494BZU4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4534-pf15049.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15049", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4534-pf15049.yaml" } ], "pfam_ids": [ "PF15049" ], "protein_name": "Transmembrane protein 217", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKQQQWCGMTAKMGTVLSGVFTIMAVDMYLIFEQKHLGNGSCTEITPKYRGASNIINNFIICWSFKIVLFLSFITILISCFLLYSVYAQIFRGLVIYIVWIFFYETANVVIQILTNNDFDIKEVRIMRWFGLVSRTVMHCFWMFFVINYAHITYKNRSQGNIISYKRRISTAEILHSRNKRLSISSGFSGSHLESQYFERQSFHTSIFTCLSPVPSSAPSTCRYTIDVC", "sequence_length": 229, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1f70cad0b2367a1a05a44d3dac435a58d2ed30c98265c5128b582691b0341649", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N7C4.json", "taxon_id": "9606", "uniprot_accession": "Q8N7C4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15049", "short_name": "DUF4534", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mitochondrial-respirasome-assembly-go0097250.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097250", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitochondrial-respirasome-assembly-go0097250.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mitochondrial-respiratory-chain-complex-iii-assembly-go0034551.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034551", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitochondrial-respiratory-chain-complex-iii-assembly-go0034551.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4535-pf15054.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15054", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4535-pf15054.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:E0CX11", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15054" ], "protein_name": "Short transmembrane mitochondrial protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ce84dfa56211dd5402e4781338d496d1f00fdf9ec3dd011c97e6f31b8cf696e2", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLQFLLGFTLGNVVGMYLAQNYDIPNLAKKLEEIKKDLDAKKKPPSA", "sequence_length": 47, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ce84dfa56211dd5402e4781338d496d1f00fdf9ec3dd011c97e6f31b8cf696e2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E0CX11.json", "taxon_id": "9606", "uniprot_accession": "E0CX11", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-translation-in-response-to-stress-go0032056.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032056", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-translation-in-response-to-stress-go0032056.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4535-pf15054.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15054", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4535-pf15054.yaml" } ], "pfam_ids": [ "PF15054" ], "protein_name": "SLC35A4 upstream open reading frame protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADDKDSLPKLKDLAFLKNQLESLQRRVEDEVNSGVGQDGSLLSSPFLKGFLAGYVVAKLRASAVLGFAVGTCTGIYAAQAYAVPNVEKTLRDYLQLLRKGPD", "sequence_length": 103, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cfbfdb54522105f54a45e37ff002e42030594a0ffafdf87f53ed5796d524c1ba", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/L0R6Q1.json", "taxon_id": "9606", "uniprot_accession": "L0R6Q1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4535-pf15054.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15054", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4535-pf15054.yaml" } ], "pfam_ids": [ "PF15054" ], "protein_name": "Short transmembrane mitochondrial protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQFLLGFTLGNVVGMYLAQNYEMPNLAKKLEEIKKDLEAKKKPPSS", "sequence_length": 47, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "515cbf25781babfeb22d8d3a4926d35c13ea54cc0af1c39ddf18c53bd1e82d7b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P0DP99.json", "taxon_id": "10090", "uniprot_accession": "P0DP99", "uniprot_release": "2026_03" } ], "pfam_id": "PF15054", "short_name": "DUF4535", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dmac1-dmo2-pf15055.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15055", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dmac1-dmo2-pf15055.yaml" } ], "pfam_ids": [ "PF15055" ], "protein_name": "Mitochondrial protein-disulfide reductase dmo2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMPSSSFQQTPKPVDLDDPRFEQYDCLPCRLVGAGAFTGLGIYAYSQSRIPLNTPNYKLKRFGILGMAYGFILTGVYRLFQ", "sequence_length": 81, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d8244128c00fef0f5ea365b9ee86f0e4d3d99e542ef994d1262deb2c06f03a8c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G2TRJ5.json", "taxon_id": "284812", "uniprot_accession": "G2TRJ5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/distal-membrane-arm-assembly-complex-protein-1-like-domain-ipr028036.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/distal-membrane-arm-assembly-complex-protein-1-like-domain-ipr028036.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dmac1-dmo2-pf15055.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15055", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dmac1-dmo2-pf15055.yaml" } ], "pfam_ids": [ "PF15055" ], "protein_name": "Distal membrane-arm assembly complex protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSRLSQPFESYITAPPGTAAAPAKPAPPATPGAPTSPAEHRLLKTCWSCRVLSGLGLMGAGGYVYWVARKPMKMGYPPSPWTITQMVIGLSENQGIATWGIVVMADPKGKAYRVV", "sequence_length": 116, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c9b81e4d73b2c153053f7db4f01435378a21c7f903acca541a312eba67ed8e0c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96GE9.json", "taxon_id": "9606", "uniprot_accession": "Q96GE9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/distal-membrane-arm-assembly-complex-protein-1-like-domain-ipr028036.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/distal-membrane-arm-assembly-complex-protein-1-like-domain-ipr028036.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dmac1-dmo2-pf15055.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15055", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dmac1-dmo2-pf15055.yaml" } ], "pfam_ids": [ "PF15055" ], "protein_name": "Distal membrane-arm assembly complex protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSSFSGSTEFSAPAPPTVSTAVPANPPAKSAVPASPARDPELKTCWSCRVLSGSTLFGAGTYVYLVARRPLKQGIPPGPGTVLQMVIGISIACWGVVVLVDPKGKSHPVI", "sequence_length": 111, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4a972a1f88d2de0eddc25250ecfa8608d3d2f8a28abacc8a628298bc57820616", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CQ00.json", "taxon_id": "10090", "uniprot_accession": "Q9CQ00", "uniprot_release": "2026_03" } ], "pfam_id": "PF15055", "short_name": "DMAC1_Dmo2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4537-ipr032770.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032770", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4537-ipr032770.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4537-pf15057.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4537-pf15057.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vwa-3-pf13768.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13768", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vwa-3-pf13768.yaml" } ], "pfam_ids": [ "PF13768", "PF15057" ], "protein_name": "von Willebrand factor A domain-containing protein 3B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKSGPSSTISEQQLQRQEGWINTKTDLAEQSLISSEKWLQLHGLKSNKLTLKQILSQIGFPHCEDYVASLGRPVASRYADGLFPQLYRAEDGRVYNLTAKSELIYQFVEHLTQAVESYKQRMDWLTSKSRQIFGVILEQCVTIVLDFGGILEGELDLCREALTMVLQEQVAHITEFNIIRVSQEPVKWQENATPVTEQSIATAISWVEKLTVELTVSEAGRLDALLEAGRDKTIESIYYFVVGDVPEESKELLLQRALEIPCPVYTVSFNARGEGTIAFLKDLSAKTHSRFHAFAERTECVEFPAFSTKDGDNVMTWNSRKLKGKLPPGAGVREDVFLVWQEMEEACSTLAQIQRLVAEPPKPDVATVDCESETTSVEIASNPEDTWDSKTWLQKYGLKAQKLSLYDVLADCSFRHADGVVDIKAKPENESVQTSAETNKKTVHAKYCSRFVHAPWKDGSLVHVNITKEKCKWYSERIHTALARIRRRIKWLQDGSQSLFGRLHNDCIYILIDTSHSMKSKLDLVKDKIIQFIQEQLKYKSKFNFVKFDGQAVAWREQLAEVNEDNLEQAQSWIRDIKIGSSTNTLSALKTAFADKETQAIYLLTDGRPDQPPETVIDQVKRFQEIPIYTISFNYNDEIANRFLKEVAALTGGEFHFYNFGCKDPTPPEAVQNEDLTLLVKEMEQGHSDLEKMQDLYSESLIMDWWYNAEKDGDSKHQKEICSMISTPEKCAKPQSDVDSTQTSSLNMLKGPWGLSDQKVQKKKVLHAESTKTSLLRSQMSSLRSSACSERKDGLSNASSRRTALSDKEMSILLAEEWLDDKSSEKVTREGSQVYDHDSSDVSSENWLKTYGLVAKKLTLMDALSVAAVPHSSTYVPVLDKHVVSKVFDEVFPLAHVCNDTNKMTLINPQGAKLNIYKRKVEQAIQSYEKRLNKIVWRALSQEEKEKLDANKPIQYLENKTVLNQALERLNWPISLKELSMLESEILAGKMYIQQAMELQEAAKKNYANKAPGEQQKLQGNPTKKTKSKRPDPLKGQKVIARCDENGFYFPGVVKKCVSRTQALVGFSYGDTKVVSTSFITPVGGAMPCPLLQVGDYVFAKIVIPKGFDFYVPAIVIALPNKHVATEKFYTVLKCNNRREFCPRSALIKISQNKYALSCSHIKSPPIPEDPEVEDVEARNSAFLFWPLKEADTQDSREPRREKPRRKKRPAKQPLQQAAPSDSDGSSHGISSHGSCQGTHPEPRTAHLHFPAAGRLGLSSHAIIATPPPRAALPCTLQATHSSKGLRSVPETL", "sequence_length": 1294, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c0735888e8d17da9ade8f90b096f3c616ea8661436b8efd7095ecc61388e8a84", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q502W6.json", "taxon_id": "9606", "uniprot_accession": "Q502W6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4537-ipr032770.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032770", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4537-ipr032770.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4537-pf15057.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4537-pf15057.yaml" } ], "pfam_ids": [ "PF15057" ], "protein_name": "Uncharacterized protein C11orf16 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQPSASPGLPLPKYCSVATTVKAPDLHGAVPPWDMSFTCPFATQAPWLATHCTFTRCTACCPCLHTVDRPWPGLRWLGRVGAAGGSWVLARKEPDGFYYLAQIKAAPELEKRGALVVEFEAPLVTGLELPAQQQRVVFPEDVIQFSPSVPHSLQLGDKVLAPWEPGQQRYGPGTVLVGLKKQKGQRASKEKEITVHFWNGKTTKVPLGSVRWVPPTVWKKAVERLQAPHTRDCHSSCLWVPHCSQLGPRAGCTTHRHPLDSSFLCPPCLSCACCQLQCQSSCPLVGPSWWPLTRTSELTTRKLPEPEVKPTAQLLPLQGPKEEPVAELSYNMFSSSSSSSEEENSESHLEMGLPLRQMVSRAVNTDPILSETTSLQQYSPHKPEWRYWRRNGPEPPPGKPGR", "sequence_length": 402, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "888a98939d95ea57bb2c55bfb65d65a471a8bbf6506edebce5ecd628ba463b4b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9JJR6.json", "taxon_id": "10090", "uniprot_accession": "Q9JJR6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4537-ipr032770.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032770", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4537-ipr032770.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4537-pf15057.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4537-pf15057.yaml" } ], "pfam_ids": [ "PF15057" ], "protein_name": "Uncharacterized protein C11orf16", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESSTGPRMPLLKYCSVATSLKAPGWDGAAPPWDLSFTYPFALQAPWLTGHKPLARHASSCPCLHVADPAWQGPGWLGRAGDAANTWVLARREADGFYYRAQIKATPELERQGVLLVEFEAPLVAGPKLPAQQQRVVLEEDVIPLSPSVGYSLRPGDKVLALWEPGQQQYGPGTVLLGLEMRDPQRASKEKEITVHFWNGKAAKVPLGGVQSVSLTIWKKAVERLHKSFTREHPRPLHWAPCCSLLGPITGRITNELPPDAPFLCPLCHHHACCQLLCQGCLCGCPPCGTTWWPLTRTSEVMARELPELEPTAQLLPLEGPKEEKVAMHAPLAVSSSSSSSCEQDGVENDLEMGPPQRLMVNSAVNTDPIFLEMPLRQSGLCQPEWRYWKRNGPEPCLGKPGTRYSNICKEEKDHKQQRAQTAVVGTTKELVSKATHMKPPRTPPGEAEHRKRSQSLAICQWNKNSR", "sequence_length": 467, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b96ac7fdf81678ea3bd65df3263ff4b2e96dc1f6792e957164484d6d3240ebc", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NQ32.json", "taxon_id": "9606", "uniprot_accession": "Q9NQ32", "uniprot_release": "2026_03" } ], "pfam_id": "PF15057", "short_name": "DUF4537", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mitrac7-phoenixin-pf15061.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15061", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mitrac7-phoenixin-pf15061.yaml" } ], "pfam_ids": [ "PF15061" ], "protein_name": "Small integral membrane protein 20", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAARNLRTALIFGGFISMVGAAFYPIYFRPLMRLEEYQKEQAVNRAGIVQEDVQPPGLKVWSDPFGRK", "sequence_length": 69, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4624a8c2a947ec2232611d541d2a80ede90ca2d953b6cd679c80273ff2698aa0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D3Z7Q2.json", "taxon_id": "10090", "uniprot_accession": "D3Z7Q2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mitrac7-phoenixin-pf15061.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15061", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mitrac7-phoenixin-pf15061.yaml" } ], "pfam_ids": [ "PF15061" ], "protein_name": "Small integral membrane protein 20", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRNLRTALIFGGFISLIGAAFYPIYFRPLMRLEEYKKEQAINRAGIVQEDVQPPGLKVWSDPFGRK", "sequence_length": 67, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ecf1e2f8271f5b55fac76479adc6af8b7338f9947800745480a6a782e7563cea", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N5G0.json", "taxon_id": "9606", "uniprot_accession": "Q8N5G0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15061", "short_name": "MITRAC7_Phoenixin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/homologous-recombination-ob-fold-protein-ob-fold-domain-ipr058570.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR058570", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/homologous-recombination-ob-fold-protein-ob-fold-domain-ipr058570.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hrob-pf15072.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15072", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hrob-pf15072.yaml" } ], "pfam_ids": [ "PF15072" ], "protein_name": "Homologous recombination OB-fold protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTCGFQKLFSVEEDFEDEDFLSALENAENHVVSALPRDAGCLRPVSSRPQETVQTQSSRPVPSYPTSNQSVPRLCLPPSSMRENAKAPLSTGVMSLRPASISSSSLSSQQRMTGAKVFQESSGPQPSAAHSGYIFESHQQGIGDFEAPDQDDLDKALASMEFEGAGLELEADSGATQILPAKHCEDPVLAKKARVADLSGSLRKEPMVHCRNPWPSLRPTSATGSLPVPATSCVSTSQQRGSPAPAPQYLPVAGRTIRSSPQNYGPGQPLQSPRAWSSGKPRFSGPQRPHGSSAAFCQGPLSSRAPVSSVESPVSTPRNTSTPVTQPALQTPVVTNHLVQLVTATNRTPQQPSRPSIRAKTRRFPGPAGLLPHQHSGENLEEIMVSTPQTPTHGALAKFQTEIATSSQGSVEEDFGQGPWLTMKSALGLDEGDPTCFLYTYSIVMVLRKAALKQLPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMLGTVHRVLLETHQSELRPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSLDSGDGDFLEPPQPLPKDLGNSHGSLQPDVAAEPTRGLRTAQNPAVAFPEEELSEADDLDGLLSELPEDFFCEPSS", "sequence_length": 615, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5ab0a3593cbed9c03bf25dff7f6d276d22287e4947babb6d6e5d512ddf55ed71", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q32P12.json", "taxon_id": "10090", "uniprot_accession": "Q32P12", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hrob-pf15072.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15072", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hrob-pf15072.yaml" } ], "pfam_ids": [ "PF15072" ], "protein_name": "Homologous recombination OB-fold protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDFLSALENAENHIVSALPGDAVCLRPNSSRPQETPQAHSSKLSPSYPASNRSVLGLCFPTSRMPETIKEPPCKGAMFLRPVSISSSSSGSQQRMTGTKVSQESSGRQSSAAHSGFIFESCQHGIGDFETLDQDEFDKALASMEFEGAGLEPEVNRGASQILPAKHCEDPVLAKKARVADLSGSFQEGPIVHCRKPWPSLRPTTATGGLPVPATSDISTSHQRGSPVPAPQYSPVAGRTLQNGPQNYVPGQPLQSPRAWSSGKPRFSGPQCPHSSSAAFCRGPSPSRAPVSSVESPFSTPRSTSTTVTQPALQTPVVTNHLVQLVTATNRTPQQPSRPSIRAKTRRFPGPAGLLPHQHSGENLEEIMVSTPQTPTHGALAKFQTEIVTSSQGSVEEDFGRGPWLTMKSALGLDEGDPTCFLYTYSIVMVLRKAALKQLPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMLGTVHRVLLETHQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSLDSGDGDFLKPPQPLPKDLGNSHGSLQPDVAAEPTQGLRTAQNPPASPEEELPEADDLDGLLSELPEDFFCEPSGWSCLKTGHPP", "sequence_length": 607, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fa6b186ad7aa5971e1faece3f3359fced0c76329474c8a852cfbd59e8532d609", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6GX86.json", "taxon_id": "10116", "uniprot_accession": "Q6GX86", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/homologous-recombination-ob-fold-protein-ob-fold-domain-ipr058570.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR058570", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/homologous-recombination-ob-fold-protein-ob-fold-domain-ipr058570.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hrob-pf15072.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15072", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hrob-pf15072.yaml" } ], "pfam_ids": [ "PF15072" ], "protein_name": "Homologous recombination OB-fold protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MACSLQKLFAVEEEFEDEDFLSAVEDAENRFTGSLPVNAGRLRPVSSRPQETVQAQSSRLLLLHPTAPSEALGLPDLDLCLPASSTPSADSRPSCIGAAPLRPVSTSSSWIGNQRRVTVTEVLRETARPQSSALHPLLTFESQQQQVGGFEGPEQDEFDKVLASMELEEPGMELECGVSSEAIPILPAQQREGSVLAKKARVVDLSGSCQKGPVPAIHKAGIMSAQDESLDPVIQCRTPRPPLRPGAVGHLPVPTALTVPTQQLHWEVCPQRSPVQALQPLQAARGTIQSSPQNRFPCQPFQSPSSWLSGKAHLPRPRTPNSSCSTPSRTSSGLFPRIPLQPQAPVSSIGSPVGTPKGPQGALQTPIVTNHLVQLVTAASRTPQQPTHPSTRAKTRRFPGPAGILPHQQSGRSLEDIMVSAPQTPTHGALAKFQTEIVASSQASVEEDFGRGPWLTMKSTLGLDERDPSCFLCTYSIVMVLRKQAALKQLPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMQGTVHRLLLETCQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSPDSGDGSFLKPSQPFPKDSGSFQHDVAAKPEEGFRTAQNLEAEASPEEELPEADDLDGLLSELPEDFFCGTSS", "sequence_length": 647, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b39a36d051917ed24a2106e8abe61d8164213c081c4c30ee5251af2249bab1e2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N3J3.json", "taxon_id": "9606", "uniprot_accession": "Q8N3J3", "uniprot_release": "2026_03" } ], "pfam_id": "PF15072", "short_name": "HROB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spata48-pf15073.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15073", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spata48-pf15073.yaml" } ], "pfam_ids": [ "PF15073" ], "protein_name": "Protein SPMIP7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVEIQDTPGKISISKRSILSGTVENIDYPHYCDLLRKMNMPFVKGLENRHNYGRFEKKCNPAFLKFHPYPPSVLPDYHLHDPYPPPYGPHYPLFPLRDDVTLGDSCSGFMSPGGDADLNPGIGRTIPTLVDFSDVKPQHRVPRPDTGFQTTIKRQKILSEELQQNRRWNSREVPDISIRARLGGWTSPLKVTPLQPHHEGRSLSHIFTFDEEATCTDEGEPLVQTNKKCNAKDSFYKSSTQKAYEDVPWDKMLPPKLVPEETTLEKTADPISQCFTLKRYKGVPAITQMVGELWDRFQTRSFLAPVKPINFVSSSSRSKYIPLYTGHVQSTNADDVDNPLGDIASLAKQRYSKPLYTNTSRAANIPGYTGKVHFTATHPANSNIPSTTPSPDSELHRVFQKEMAVDLFRHQAPLSRLVTTVRPYNPFNKKDKETIDY", "sequence_length": 438, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7acb77a9fefc7d71bdd22b056a9fd90030707973c21e8c6065afaa843f1b064d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A4D263.json", "taxon_id": "9606", "uniprot_accession": "A4D263", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spata48-pf15073.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15073", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spata48-pf15073.yaml" } ], "pfam_ids": [ "PF15073" ], "protein_name": "Protein SPMIP7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDMEVKTMPGKISIPRRFIFSEGKAIEHPDYPHYSNLLQKMNMPSVKGLEDRHNCVRFEKKCNPTFLKFHPYPPSVLPDYHLHYPYPPPYGRAYPLAPLRDDVPLGDPCSGFMSPGGDANLKPNIGRAIPNLVSFHDVKPQNRVPRPDKGFQTTIKRQTILAEELKQDRRWNSRKVPDISIKAKLGGWTSPMKVVPVPVHEHEVGTLSRIYTFDEEAISTDDSEPLVQLDKKYNIKDSFYKSSTQKAYEDVPWDKMLPPKLDPEETTVEKAADHISQCFSLKRYERLPAITQMVGGLWDRFQTRLFSAPAKPINFVSPSTRSKYIPLYTGHVQSTDADNVDNPYGDIKSVASPRHSKLQYTNSSRSANIPGYTGKVHFTATHPTNSNIPSREPSADSEMNRLLLQEMRVDRFRHQGPMSQMVTTVKPYNPFNKKEKETLEY", "sequence_length": 441, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "896c916b6709a1c4cba521c5127671ef993f29b36e8fb606e9daebe646108753", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5NC83.json", "taxon_id": "10090", "uniprot_accession": "Q5NC83", "uniprot_release": "2026_03" } ], "pfam_id": "PF15073", "short_name": "SPATA48", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap90-pf15074.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15074", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap90-pf15074.yaml" } ], "pfam_ids": [ "PF15074" ], "protein_name": "Cilia- and flagella-associated protein 90", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDDEEETTASTLRGKPRPPPVSAQSAFSYIPPRRLDPKEHSYYYRPARTGIISLYDCIFKRRLDYDQKLHRDDREHAKSLGLHVNEEEQERPVGVLTSSVYGKRINQPIEPLNRDFGRANHVQADFYRKNDIPSLKEPGFGHIAPS", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b21eb1e3be29015bdb117ee0245ebb41fd406a4d918fea955e86e7be92c078db", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4QMS7.json", "taxon_id": "9606", "uniprot_accession": "A4QMS7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap90-pf15074.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15074", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap90-pf15074.yaml" } ], "pfam_ids": [ "PF15074" ], "protein_name": "Cilia- and flagella-associated protein 90", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEELAKKERRAMDPGGLKKEGKVEEEAGKEEGREEEGGEEEEVTSETLRGKPRPLPISALPAFSYIPPRHQGPKERSYFSREGQTGIVSLYDCVFKRRLDYNQKLHRDDREHAKNLGLHINEEEQERTVPVLMSSVYGKRINQPIEPLNRDYGHVSHVKTDFYRKNEIPSIKGPGFGHINPA", "sequence_length": 182, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f5991126a1646e89919df0bca74aff9ea1ab87efccee4159ae7ca74bc1a47432", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DAR0.json", "taxon_id": "10090", "uniprot_accession": "Q9DAR0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15074", "short_name": "CFAP90", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spmap1-like-pf15075.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15075", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spmap1-like-pf15075.yaml" } ], "pfam_ids": [ "PF15075" ], "protein_name": "Sperm microtubule associated protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYLSECRLRLEKGFILDGVAVSTAARAYGRSRPKLWSAIPPYNAQQDYHARSYFQSHVVPPLLRKTDQDHGGTGRDGWIVDYIHIFGQGQRYLNRRNWAGTGHSLQQVTGHDHYNADLKPIDGFNGRFGYRRNTPALRQSTSVFGEVTHFPLF", "sequence_length": 154, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6e4c90dea4174d4df6459f06e4fcf98e4924652672eee512549b600631e331ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8MV24.json", "taxon_id": "9606", "uniprot_accession": "A8MV24", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spmap1-like-pf15075.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15075", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spmap1-like-pf15075.yaml" } ], "pfam_ids": [ "PF15075" ], "protein_name": "Sperm microtubule associated protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MACCYNSPRRLEKSFVLDGVAVSTMAQAYSIMRPKLWSAIPPYNPQLDHHSRRYFRSRVVPPILRKTDQDHGGTGRDGWIVDYFHIFGQGQRYLNRRNWAGAGHSLQQVSGHDYYNSNPKAITTGLNGRFGYRRNTPALRQHTSVFGEVTPFPIF", "sequence_length": 155, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b6199bb18e2e6caae26d91aafd88cee599b0f1219b47bbd0a55a1746449964d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DAQ5.json", "taxon_id": "10090", "uniprot_accession": "Q9DAQ5", "uniprot_release": "2026_03" } ], "pfam_id": "PF15075", "short_name": "SPMAP1-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4543-pf15076.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15076", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4543-pf15076.yaml" } ], "pfam_ids": [ "PF15076" ], "protein_name": "Uncharacterized protein C17orf67 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKLFVLVFALTLLAFSSEASPILTEKQAKQLLRSRRQDRPSKPGFPDEPMREYMHHLLALEHRAEEQFLEHWLNPHCKPHCDRNIVQPV", "sequence_length": 90, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a0fe7f928da220da2d958bf187ab043856f84451c99a9278e628736e3b5e0275", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0CD95.json", "taxon_id": "10116", "uniprot_accession": "P0CD95", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4543-pf15076.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15076", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4543-pf15076.yaml" } ], "pfam_ids": [ "PF15076" ], "protein_name": "Uncharacterized protein C17orf67", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTLPVLVLSLTLLTVFSETSPILTEKQAKQLLRSRRQDRPSKPGFPDEPMREYMHHLLALEHRAEEQFLEHWLNPHCKPHCDRNRIHPV", "sequence_length": 90, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b7c8ec724ea3c5a6eec4b36a771a9ea1cbd2facfe8352b9fc0bbe31432111753", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q0P5P2.json", "taxon_id": "9606", "uniprot_accession": "Q0P5P2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4543-pf15076.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15076", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4543-pf15076.yaml" } ], "pfam_ids": [ "PF15076" ], "protein_name": "Uncharacterized protein C17orf67 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKLFVLVFALALLAFSSDASPILTEKQAKQLLRSRRQDRPNKPGFPDEPMREYMHHLLALEHRAEEQFLEHWLNPHCKPHCDRNIVHPV", "sequence_length": 90, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6964729aef6804965b3ffe1dd605b107594c70d00e241e2b7be299518f785e7f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3V3I5.json", "taxon_id": "10090", "uniprot_accession": "Q3V3I5", "uniprot_release": "2026_03" } ], "pfam_id": "PF15076", "short_name": "DUF4543", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/majin-pf15077.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15077", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/majin-pf15077.yaml" } ], "pfam_ids": [ "PF15077" ], "protein_name": "Membrane-anchored junction protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLKPFTYPFPETRFLHAGPNVYKFKIRYGKSIRGEEIENKEVITQELEVPVEKKAVGAVMRKRKHMDEPSSPSRPGLDRAKIGTSSQGPSKKKPPVETRRNRERKTQQGLQETLASDITDVQKQDSEWGHSLPGRIVPPLQHNSPPPKERAATGFFGFLSSLFPFRYFFRKSSHS", "sequence_length": 176, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d7452b1e5125c9a7d5bde7a2e7f39737cf986bc816cb680b0b43de93c48013c1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3KP22.json", "taxon_id": "9606", "uniprot_accession": "Q3KP22", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/meiotic-attachment-of-telomere-to-nuclear-envelope-go0070197.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070197", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/meiotic-attachment-of-telomere-to-nuclear-envelope-go0070197.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/majin-pf15077.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15077", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/majin-pf15077.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9D992", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15077" ], "protein_name": "Membrane-anchored junction protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "60f043255a9377fc9728ea568a532ebc200bcce4359f27323ff28db8fde4f182", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSLKPFTYPFPETRFLHAGPNVYKFKIRYGNSIRGEEIEDKEVIVQELEDSIRAVLANMDSLQPFVTEHFIVFPYKSKWERVSHLKFKHGESILTPYPFVFTLYIEMKWFAEDLPSGKPADDIPLELVLAETEAEEATMRKWKRKLMEEPSSPSRQGPHRAKMETSSEASSNKKPLKESKRSTDEEAQQEYQDTPASNAIAVKEQDAALGHGLQGLVVPPLQHSSPPPPKEPGARGFLGFLSALFPFRYFFKKSGQ", "sequence_length": 256, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "60f043255a9377fc9728ea568a532ebc200bcce4359f27323ff28db8fde4f182", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D992.json", "taxon_id": "10090", "uniprot_accession": "Q9D992", "uniprot_release": "2026_03" } ], "pfam_id": "PF15077", "short_name": "MAJIN", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4545-pf15078.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15078", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4545-pf15078.yaml" } ], "pfam_ids": [ "PF15078" ], "protein_name": "Uncharacterized protein C1orf141 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAERVLDKLDILDEQAKTLLATRAKKNCLQSQVKRKISVIPLTFDFQLELEKDIATSISKTNSKITKDRSYGTKKPKRYVSFKNMPEPKKSDFQNSNLRPPFLPTNIKTQEIKSIEPVEEYLKSRSIRSFHYLKDIPETEYAKPFQELYSQHRHQCRRTLCSTVFSSVPSNQSHAYKKEDSIYSTKENESIRNDQLNEYSVRQKSLLPLCFEDELIKPDAKIIDIGLVKTVTSHTGKNDTNPIMFHEAGYVQMLLLTKNRLPPHFMKNGNGSPYERSNVVLQRNCEMLKSVARDQSITPSKTQRTLPTTQKKDIPAISFKVSDRVVDDKLRKKTRKQTFKNISWDKLYNFSQTFSSLTKKFVGFLDKTVIQEMSAKTGKFEKMFSTVKPVSEFSASPFKYYSKPSRNILKVHKINNVTPLDDLLNLSSKK", "sequence_length": 430, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "837434accfb3ca39ee79c9058ba5bc0acd4be19e861e0c9beca5a21b0ffd767a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2KIL1.json", "taxon_id": "9913", "uniprot_accession": "Q2KIL1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4545-pf15078.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15078", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4545-pf15078.yaml" } ], "pfam_ids": [ "PF15078" ], "protein_name": "Uncharacterized protein C1orf141", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEKILEKLDVLDKQAEIILARRTKINRLQSEGRKTTMAIPLTFDFQLEFEEALATSASKAISKIKEDKSCSITKSKMHVSFKCEPEPRKSNFEKSNLRPFFIQTNVKNKESESTAQIEKKPRKPLDSVGLLEGDRNKRKKSPQMNDFNIKENKSVRNYQLSKYRSVRKKSLLPLCFEDELKNPHAKIVNVSPTKTVTSHMEQKDTNPIIFHDTEYVRMLLLTKNRFSSHPLENENIYPHKRTNFILERNCEILKSIIGNQSISLFKPQKTMPTVQRKDIQIPMSFKAGHTTVDDKLKKKTNKQTLENRSWNTLYNFSQNFSSLTKQFVGYLDKAVIHEMSAQTGKFERMFSAGKPTSIPTSSALPVKCYSKPFKYIYELNNVTPLDNLLNLSNEILNAS", "sequence_length": 400, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "10cda4bf0e9589961e2a96435c10c838d1ffd1c1567b8faee1870ffd12fdb881", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5JVX7.json", "taxon_id": "9606", "uniprot_accession": "Q5JVX7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4545-pf15078.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15078", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4545-pf15078.yaml" } ], "pfam_ids": [ "PF15078" ], "protein_name": "Uncharacterized protein C1orf141 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTEKILEKFDALEEKERILEAIRENNTDRHHRQRKKPLITPLLFDLHVQFGDTITPSASKIIKNKPHDLKNPKRSVSFKYKPNNSRSDLEESDLRPPILGTMINYEESKLMDHKEENLKSRPISLRYLKDKDETEYANPLPFPQLWSKHLCKKSAESSVPTPKLTNESNASKKENVSPPFTDQHESRTKKSMHSTDHSADSSTSRGKCPPKGITKESELTRNDEARKPHPVKQSIMLPLDCEDLLKNPKIKTIDLRPAVTVHTSMKQSHANPIIFYDTEYVQMLFLTKRFTPYAMKCTERNIVLEKNYEVLKVLFSDEPSAVSEPIQQKHLQVFSAEYAQKSINEKRKKKHDRLVSKKISPNTRYNLSQTFSSLSKKFVGYFDKDVTQGKSYKANRFERFSKTKPPPTRKLTTLPIKYDSKPLKNIFEIHKLNNMTPLDNLLGLRA", "sequence_length": 446, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "df121006018701090f216553979009c33a95a190bf638275fe0dda1e4b846a04", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D5Q8.json", "taxon_id": "10090", "uniprot_accession": "Q9D5Q8", "uniprot_release": "2026_03" } ], "pfam_id": "PF15078", "short_name": "DUF4545", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tsc35-pf15079.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15079", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tsc35-pf15079.yaml" } ], "pfam_ids": [ "PF15079" ], "protein_name": "Testis-expressed protein 35", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAKNAELKKTNLKKNYKAVCMEPKLTQIYDFKGFKQEGLLIRKGMTRELKNELREVREQLTEKMEEIKQIKDIMDKDFDKLYEFVEIMKEMQQDMDEKMDVLINNQKNNKLPFQNQAKEQQKFWQLGKMDKSSQAMITEEPDGVPLACDKNVVPPKPTRNPLESLHPCQSCCEKCLLCALKTNRNQGRPSHHAWVPFSPLSSGAAF", "sequence_length": 207, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5330dcc6c9c0f7b492da719193a70d492e46dcc3e8e557051e639b6de594cf35", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q14BK3.json", "taxon_id": "10090", "uniprot_accession": "Q14BK3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tsc35-pf15079.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15079", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tsc35-pf15079.yaml" } ], "pfam_ids": [ "PF15079" ], "protein_name": "Testis-expressed protein 35", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAKRAELKKTHLSKNYKAVCLELKPEPTKTFDYKAVKQEGRFTKAGVTQDLKNELREVREELKEKMEEIKQIKDLMDKDFDKLHEFVEIMKEMQKDMDEKMDILINTQKNYKLPLRRAPKEQQELRLMGKTHREPQLRPKKMDGASGVNGAPCALHKKTMAPQKTKQGSLDPLHHCGTCCEKCLLCALKNNYNRGNIPSEASGLYKGGEEPVTTQPSVGHAVPAPKSQTEGR", "sequence_length": 233, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f66f660fc36f661d859145dc8b3b3a557625900a8efca7dcde982fe5212fa396", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T0J7.json", "taxon_id": "9606", "uniprot_accession": "Q5T0J7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15079", "short_name": "Tsc35", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4547-pf15080.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15080", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4547-pf15080.yaml" } ], "pfam_ids": [ "PF15080" ], "protein_name": "Single-pass membrane and coiled-coil domain-containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNETTTLISLKEAMKRVDHKLQALETQFKELDFTKDNLMQKFEHHSKALASQAAQDEMWTAVRALQLTSMELNILYSYVIEVLICLHTRVLEKLPDLVRGLPTLASVLRRKVKNKRVRVVWESILEECGLQEGDITALCTFFIARGNKAEHYTAKVRQMYIRDVTFLITNMVKNQALQDSLLRAVQVIEKGKAVRTPEKQKSSLEELIPSVKN", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ee63df0b8c0b0c57179ab7dcb892be670dc7aa96aaa7f54ce626e063b9523b11", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q147U7.json", "taxon_id": "9606", "uniprot_accession": "Q147U7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4547-pf15080.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15080", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4547-pf15080.yaml" } ], "pfam_ids": [ "PF15080" ], "protein_name": "Single-pass membrane and coiled-coil domain-containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTHETTTLISLKEAMKRVDNKLRALDTQFKELDVTKDNLTLRFEHHSKTLASQAAQDEIWTAALALGFTSMELNIVYSYVIEVLICLHTRMLQKLPDLVRSLPTLASVLRRKAKNKHVRLVWESVLQEYGLQERDVSALCTFFIVHGNKGEHYAANVRRMYIKDVSFMITNMVKNQALQDGLLRAVQIIEKGKQAQDPENSRAPLKELMPPVKD", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "987140645b386d15f561a657b6d8c91159f42b046463c4e89ffb706a9185daba", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CEZ1.json", "taxon_id": "10090", "uniprot_accession": "Q8CEZ1", "uniprot_release": "2026_03" } ], "pfam_id": "PF15080", "short_name": "DUF4547", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4548-pf15081.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15081", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4548-pf15081.yaml" } ], "pfam_ids": [ "PF15081" ], "protein_name": "Uncharacterized protein C1orf105", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKRELKASVPKFDKIPWLSEASLVNKPLVLSLPRRYPHTSATFLTSSKKNMNLPILFQVPDVLSKARRNQCDSMLLRNQQLCSTCQEMKMVQPRTMKIPDDPKASFENCMSYRMSLHQPKFQTTPEPFHDDIPTESIHYRLPILGPRTAVFHGLLTEAYKTLKERQRSSLPRKEPIGKTTRQ", "sequence_length": 183, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ae4fbb790f6e5084ce9866759aa5687702738ec11bc8df76b064a599c4459fc0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O95561.json", "taxon_id": "9606", "uniprot_accession": "O95561", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4548-pf15081.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15081", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4548-pf15081.yaml" } ], "pfam_ids": [ "PF15081" ], "protein_name": "Uncharacterized protein C1orf105 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKRELKTFVPKFDKIPWLSEASVVNKPLILSIPRRYRSSIVLTSYKKDMYLPHLLEDSDFISKARKNEHENLLPRNKQLCSTCRGYQEMKTLQPKIFKIPDHREPSPQNSVNHGEVSLHSQEQQLHACNDIPTESIRYRLPILGPRTAVFHRLLSDAYKTPQDTQYCAFPKKKGMSKTVKQITTPHAALYPCRSYSAI", "sequence_length": 199, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "85d7ad0fc2984decafc7e9744d788ab3011c16f7bd34b2cea2890d87794b273d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5XIU7.json", "taxon_id": "10116", "uniprot_accession": "Q5XIU7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15081", "short_name": "DUF4548", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15082", "short_name": "DUF4549", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4550-ipr027876.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027876", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4550-ipr027876.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4550-pf15084.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15084", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4550-pf15084.yaml" } ], "pfam_ids": [ "PF15084" ], "protein_name": "Uncharacterized protein CFAP92", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLHAWEWEEDPASIEPISSITSFYQSTSECDVEEHLKAKARAQESDSDRPCSSIESSSEPASTFSSDVPHVVPCKFTISLAFPVNMGQKGKYASLIEKYKKHPKTDSSVTKMRRFYHIEYFLLPDDEEPKKVDILLFPMVAKVFLESGVKTVKPWHEGDKAWVSWEQTFNITVTKELLKKINFHKITLRLWNTKDKMSRKVRYYRLKTAGFTDDVGAFHKSEVRHLVLNQRKLSEQGIENTNIVREESNQEHPPGKQEKTEKHPKSLQGSHQAEPETSSKNSEEYEKSLKMDDSSTIQWSVSRTPTISLAGASMMEIKELIESESLSSLTNILDRQRSQIKGKDSEGRRKIQRRHKKPLAEEEADPTLTGPRKQSAFSIQLAVMPLLAGTHCLPCSQQLLLVLWPERP", "sequence_length": 409, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "163be676248a1047ff395fa30f6fff27d2ea7928c413a4fbda93597213ca89d8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ULG3.json", "taxon_id": "9606", "uniprot_accession": "Q9ULG3", "uniprot_release": "2026_03" } ], "pfam_id": "PF15084", "short_name": "DUF4550", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Macaca fascicularis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4551-pf15087.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4551-pf15087.yaml" } ], "pfam_ids": [ "PF15087" ], "protein_name": "Uncharacterized protein C12orf56 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MACPLQSGFPARTNSRLDVFLRRHLPPEAYDAVRAYEPCIVVSNSENHTLKYVVLSDRLIYLTENPPKSIRRVVALRDVVAIDLIDDYPEFLSSPDGEISQHIRIIYSSTVLKKECKKSKGVRKFLFPFHHTKANNEKVKEEKNGLAFWRIKEPRSLNESPLRDQQESSTPSKNSTLCPRPGVQKLSLHGQGAFRPLPSPSRRSSQSAPATGKAVSEPSCTTNTKEPQGLPDHNNSISEIPFKCSGNGNEFYLGNSLLDSPSQSNSNLEKKESELHLYVISTTSSIFLHLKSSWNNYNIKATLLQDPFYASKFSPAIGSQKPYRSEEKIKHFSQLKSELFLKDNSLRRILPLIMELKVAAQKNFILKRLFWKTSDLFYFLVNKLHEYLPESRDKNALQNQSQRVDELVACIEIIQTLVLMFRETETESSRLNTLAAKKGTLFNLLVILISEPQIPKSCPVFDIQLVADSALVRMSFDAKLQKLILEYTNTATALLYEILLVFQQGNLGLGSRKFAISWMMSFLQSCPPIITFVASIVKQVVRGLSASFQLLTPCQAVLLYQQFYILKSCLQHSRTLAEYIKNNYREEFRYFIHMPALQKRLPLCYPITQHTTQLFHEVLKLVE", "sequence_length": 623, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ec4dddcf2aa64d3b377e058c1e534138dd6b95cd19ee0579efbff6226cc8fb37", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4R9E9.json", "taxon_id": "9541", "uniprot_accession": "Q4R9E9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4551-pf15087.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4551-pf15087.yaml" } ], "pfam_ids": [ "PF15087" ], "protein_name": "Uncharacterized protein C12orf56 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSESLETLQVILSGGEFMLHTSVWLVPGSLLSSHPVFTFKVKQENNGPTFWRRKVSRTLNESSLRSQQESSTPFKDPTSHPSDLKELSPAGQGTSRPLPTLSSCQSMAATDMPVCSLSLASSTNEPQELPDPRDAPREGSFRLDGNQSEFGLGNSLPASPLHSCRNLEKEESELHLYIISATSSIFLHLKSSWNNYIIRATLLQDPLCASEHNDVIGKPKPYRSEEKIKHFCQLKSELFLKDNTLRKILCLITELRVAAQRNFILKRLFWKTSELFYFLVNKLHEYLPESRDKHALQNKSQRADELMACIEIIQTLGLMFRETEIESSRLNTLAAKKGTLFNLLVILISKPKVPKSCSKSDAQPVADPTSAEVFFDSQLQKLTLEYTDTATALLYEILLIFQQGNLGLGSTKFAISWMMSFLQSCPPIMAFVARIVEGVVRGLSASFQLLTPCQAVLLYQQFYILRSCLQHSKALAEYIRNDHREEFRYFIHMPALEQRLPGCYPITEPTTQLCHEVLQLIEQKQCAKC", "sequence_length": 530, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70bca8e938799131204472fca89ace50dd97a6c07fc16a823604080c91a38faf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CCC3.json", "taxon_id": "10090", "uniprot_accession": "Q8CCC3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4551-pf15087.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4551-pf15087.yaml" } ], "pfam_ids": [ "PF15087" ], "protein_name": "Uncharacterized protein C12orf56", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASPLPSGFPARRNSRLDVFLRRHLPPEVYDAVRAYEPCIVVSNSENHILKYVVLSDRLVYLTENPPKSIRRVVALRDVVAIDLIDDYPEFLSSPDREISQHIRIIYSSTVLKKECKKSNSVRKFLFPFHHTKANNKKVKEEKNGLAFWRSKESRSLKESPLRDQQESSTPSKDSTLCPRPGLKKLSLHGQGAFRPLPSPSRRSSQSAPTTGKAVSEPSCTTNTKEPQGLPDHNSISEIPFKCNGNGNEFYLGNSLLDSPSQSNSNLEKKESELHLYVISTTSSIFLHLKSSWNNYIIKATLLQDPFYASEFSPAIGSQKPYRSEEKIKHFSQLKSELFLKDNSLRRILSLLMELKVAAQKNFILKRLFWKTSDLFYFIVNKLHEYLPESRDKNALQNQSQRVDELVACIEIIQTLVLMFRETETESSRLNTLAAKKGALFNLLVILISEPQIPKSCPVFDIQLVADSALVRMSFDAELQKLILEYTNTATALLYEILLVFQQGNLGLGSTKFAISWIMSFLQSCPPIITFVASIVKQVVRGLSASFQLLSPCQAVLLYQQFYILKSCLRHSRTLAEYIRNNYREEFRYFIHMPALQKRLPLCYPITQPTIQLFHEVLKLVE", "sequence_length": 622, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d8ebf664e9b99d23bee298ec70ab12884c2aa52a1e7aaa2609f441bcdffcfe55", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IXR9.json", "taxon_id": "9606", "uniprot_accession": "Q8IXR9", "uniprot_release": "2026_03" } ], "pfam_id": "PF15087", "short_name": "DUF4551", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/redic1-like-pf15089.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15089", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/redic1-like-pf15089.yaml" } ], "pfam_ids": [ "PF15089" ], "protein_name": "Regulator of DNA class I crossover intermediates 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNWVGGSRSRVLIKQERRKQKEYFERNKLKSKLKLLGVVSPVKKPSVSLDLLNLYVVNQISSMKENSETMKRPTHVNMTRDLKVPLRKHDLELPMSPHCVPSKLCIDDMEDSVPYQRIYSKEETGPVQSSQDMKSYRMFNETGNCSYIPPSFPEELRSNRHIRSQHSTPRIGPSPQQFVYENPHSGQFSNGKFPESLFSKLNKHQHVFSSSQTTAEFEAPYKRTNSSETGDFLTKRSMIMGEDCRSLYERRQPDFAMEKPLVQQIYANNGEEFSNFLEDVIHPTQRHLPDNHNSFVSHSMIDLLSKDQPGRRATFTKCGYDSLSDTHVVSSDESHSSSGLINGEFTVPQATSPNFPFNTSYTETCQPNRPCQEYNSNEINEFRRSFEKDCYSIGCGRKGKIESDKQLKELQRNARKHPVYTMADIPLEELHCKQSCDFDQNEIPMERRGMCPLKGQPMSTEKIYLESSQSSQSASYSPRPTESTFSSSTDLISEDEDQIQQQTEDSNKKATETTGNCCLEKMENHFDDITVKDDATAHKQNHKCLQSSEKNNADAFPESQCNSEHTVQNKSTDNCVLQAGRCDVGVQTEEAPLVGNTADVAVQCTIITRCSCMSSPVLIREKESSHPEAGSCTEDRTADTTGGQETPTSNSL", "sequence_length": 652, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "290a74a67de68bb17c984de8a6ad8c5dc099008ec995597babb7580d9020e889", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A087WRU1.json", "taxon_id": "10090", "uniprot_accession": "A0A087WRU1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/redic1-like-pf15089.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15089", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/redic1-like-pf15089.yaml" } ], "pfam_ids": [ "PF15089" ], "protein_name": "Regulator of DNA class I crossover intermediates 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNWVGGSRSRVLIKQERRKQKEYFEKHRLKSKMKSLGVLSPVKNSAVSLDILNLYMVNQISCKKKIPETVRKPTHVNMNRDIKMPLRKHNLELTMSPHCVPSKLCLDDTETNVNCQRLSSKEDLGPVQSQGMDSYSMLHPQFSKIENCSFTPSSFSVELPSNRHISKLNFTSGIAPTPQKLAYEKKQNDQRSTVNCSDSLLSKLNKSQDVFSPSHKTTRFGTLFERLNSLGNRNLLTKSPAVIMDEDCRSTDEIRQSDYITEKHSIQHIWGKNGKEVSNFLEDVNQSTPNLLSENCDSFVSQNMINVLNIDEQRIKKTFNKCDYDSMGDTCVVTSSDKNHVTDRCIRNIFTVPELTFSNSTLNKTSYPEKCQPNKKYQREYNKNERNDLSTSFENDYYPSSSERKEKFENDYQEKTPQKSIQKYPANSMGNIPSEELHSKQSWDFGLDEILMEEGGIYSLKSKRISTKKISLDSAQSSRSTSYSPRPTDSCFSSSSDLPSEDEDQISQQIEDSNRMTIKTKEKMNNFYVERMAKLSGDRIVKNDDKIHKQNENFYQFSVKNNTDQFPQLQCNSAHILQNKTNDNCVLQAARCDAGIQTESESVMEEKLDVAIQCDLISKCTCRSDVSLCNLERCSGNIKADTTGGQEIHKNN", "sequence_length": 652, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d62ac1c3f6f4b54b66a4841c4337c522339b3a77396f858e475d6731200dff1a", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q86WS4.json", "taxon_id": "9606", "uniprot_accession": "Q86WS4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15089", "short_name": "Redic1-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4553-pf15090.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4553-pf15090.yaml" } ], "pfam_ids": [ "PF15090" ], "protein_name": "Putative uncharacterized protein ENSP00000382790", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKIRHTEADIFKNGSKRMIATVPLRHSIRDRKPSLHFLHSLASSSSLIYRNALLHKSYKLHLQKNKSQKEKHRHSKMKIAYKDTPRNRLSRNAKKCLEDNKLVPISEVSLDPIISSNPLLRWWATSASNDSLLEELNNRFEQITNAWVQVSGDEAENCIHKKREHIENDHFKVASPLETCLLELEVSPVKMLFQKKYDLNELCTWFMQTTETQSLSLVRKANARNPLEVINTRGIKLGTKYSDFNASPFRKHFKKFALSSPSKSAEKLHILHKVANSPLLNVKSNLAIARLKRTEFKRLHHERWKREGKLHNHGTVDWNSKRRNLRFFCQNQFLNKTEGETNADIPLQGKSIVDNQCVLPPEIRGDLQQRVVMPDFKIHASFENKFKSEAKENGTNCSQKDFQKGPRLENVCPNSWRSKTLKDCRIFLRKLNCLEHRNTFKLNTIIYSPESTDSGNTHQTHMEESKRFTLRSHSARQNSFKKQSKEIENANTNNPSADEFADHLGNSKLSKCVNFDKNPDSFEVLSNLNKRKRPPWKITEMSTKRHKRQSCNSGQMANYFSKSLVSKIFGQPNFLAPSMKLVKLGAAKCTSALPHLLICPGFHTNKNIYSRDIEIIFKIYYFNNVDVISFCIW", "sequence_length": 634, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4c8a6dcb2f48fed563522cccafcc3845090f59be39b5e84cd33840bc3b856964", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/A8MVM7.json", "taxon_id": "9606", "uniprot_accession": "A8MVM7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4553-pf15090.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4553-pf15090.yaml" } ], "pfam_ids": [ "PF15090" ], "protein_name": "Putative uncharacterized protein ENSP00000382790 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLEKTCLEEKLDQQCSNVDNIKHTNVDIFKNESNSTVVSIPPKHSIRARKPSLHFLHSFASSGSLTYKNALRHKSCKLHLHKCKNPKKKYRQSGFRLASKGIPRSRCSKKAKKYLEDKKLMPISEVSLDPVISSNPLLRWWATSASNDSLLEELNNRFEQITNAWVQVSKDEAQNFVHKTEYTKGDHCEAASPLETCLLELEVSPVKMLFQKKYNLNELCTWFMQTTETQSLSLVRKANARNPLEVISTKGIKLGVKCCGFNASPFRKHFKKFAVSSPSKPAGKFHILHKMVGSPLLNVKSNLTLARLKRTEFKNLHCERWRREERPYSHRTVDWSSKRRNLRLFCQNPSWTNSEGQTNAETSLNGKGTVGNQWASPPEPRVTFAKKRVAVHDFRTHASLESKFNGTGGGQTDSEKEQIMESVSSHNWRSKTLKDCRIFLRKINCLEHRNTFKLNTIIYSPESVDSGGSQAQPEESKRFSLRSHSARQNSFKKQNEERANPKANSPASSRLTGELDSSHLSKHVNFDKNPDHSEALSKLSKRKRPPWKTTEMSAKRHKRQSCNSGQMANYCTKSQVGKLFSPSF", "sequence_length": 584, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2698d5109b97ce42154983655adaa9a28ff3ef9d5b1c6f662f1f73961d6feac7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3TNU4.json", "taxon_id": "10090", "uniprot_accession": "Q3TNU4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15090", "short_name": "DUF4553", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4554-pf15091.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15091", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4554-pf15091.yaml" } ], "pfam_ids": [ "PF15091" ], "protein_name": "Type 2 DNA topoisomerase 6 subunit B-like", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERTALAVCEILRYLIIHWKCEAGTAKGTLLDGQLVISIEALRSKHLPDSLHCIITIASTRSVYGGLNFKKFLQEIQPALPRLSAKLALASEEGGRSQDASGIAPCQVTFEVDENSQSLMTDCLVIKHFLRKIIIVHHKLKFSFSVAVNGTLSAETFGAENEPTLRLDNGVTLVVGFQRYVSKPKLNWSEAHCSRIHPVLGHPAPLFIPDAKADTGLLGELTLTPAAALCPSPKGFSSQLCRISSVSIFLYGPLGLPLLSSDQDQPSTAVFRDTSYFIDWKKYNLFMVPNLDLNLDTQSVLPDVNYKAESPEGNQSQNMNAQGPALLLFLFVDFQSDVPVQQAKIWGLHTLLTAHLSAILSESRSTVQQSIQSAVDQVWQLYHHDAKTQQRLQASLSVAVNSIMSVLTGSTRSSFRKTCLQALEAADTQEFGVKLHRIFYDITQHQFLKHCSCDTEQHLTPEKNISAQNTKDQHKNIAQEFPEESIGQAENKRPKRGSPNHGREESRVLGSARDRSPPKSATRDRELTEVSLTARGSQTQAAHGRAQAAEAASPAGGLEDLWLQEVSNLSEWLNPGHRS", "sequence_length": 579, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea3684b952ba011a4197a125da8555a8fd8c6ce5d61f0a1ffd5ab09886f2ad1b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/J3QMY9.json", "taxon_id": "10090", "uniprot_accession": "J3QMY9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4554-pf15091.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15091", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4554-pf15091.yaml" } ], "pfam_ids": [ "PF15091" ], "protein_name": "Type 2 DNA topoisomerase 6 subunit B-like", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLKKFLKEIQSILPGISAKLTWTSEEGSYSQDMTGVTPFQMIFEVDEKPRTLMTDCLVIKHFLRKIIMVHPKVRFHFSVKVNGILSTEIFGVENEPTLNLGNGIALLVDSQHYVSRPNFGTIESHCSRIHPVLGHPVMLFIPEDVAGMDLLGELILTPAAALCPSPKVSSNQLNRISSVSIFLYGPLGLPLILSTWEQPMTTFFKDTSSLVDWKKYHLCMIPNLDLNLDRDLVLPDVSYQVESSEEDQSQTMDPQGQTLLLFLFVDFHSAFPVQQMEIWGVYTLLTTHLNAILVESHSVVQGSIQFTVDKVLEQHHQAAKAQQKLQASLSVAVNSIMSILTGSTRSSFRKMCLQTLQAADTQEFRTKLHKVFREITQHQFLHHCSCEVKQLTLEKKDSAQGTEDAPDNSSLELLADTSGQAENKRLKRGSPRIEEMRALRSARAPSPSEAAPRRPEATAAPLTPRGREHREAHGRALAPGRASLGSRLEDVLWLQEVSNLSEWLSPSPGP", "sequence_length": 511, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4e168aca969412e94083217283a1169df7daac91e1d4685c7fad3289624fcdc0", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N6T0.json", "taxon_id": "9606", "uniprot_accession": "Q8N6T0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15091", "short_name": "DUF4554", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spmip4-like-pf15093.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15093", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spmip4-like-pf15093.yaml" } ], "pfam_ids": [ "PF15093" ], "protein_name": "Sperm-associated microtubule inner protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVIHGRPYCCRELEGADILSNTFYSNELHNPLQTVTRPTASEDRYQELRESLQQCRLPWGAEREYGGIIPISLPEDHRPKYEPPRVMGKGHQHYGFGGETWPRKLPVEQFYYLTQNKKSDVYGNDSLIPKPPNSTVGEICLPYPIEHPYHTHICRGAMFPTFTSPEDLYTGIKARTQQPFPPTVPTKAYDSTVLKTRGNPYRYELIDIPMDSKKKALTWPGQGVYYDFPRGVEKNKPVFYPKPPKTFAPNTSLNSWDPICSAKEANIQRNLERSHWLTSYTHDFTGLGPMDPLELDDYHEKMVAELTRKIGFDPEPQEKFHPVFKPPRPLEGRIARLIQNRRSLEAIVQQRPRSCPDCTPRVLCNFHTFVPSSKEMVALSDNIPAGVTHKNQDIEEKIIEEQSLLSTYELPSCYPTKDLTSIYDIKPFPKITDTKKTEDLYWRQQSLKTQPTPYCKPDHWIHYENLKSPLRDQYNMCPDPVSLSKPSVLQNKQDTEAFTLEHFLSKPEEELFLNMENNEETRPVLGWIPRAGVTKPQTNLLELKNSFSKTGAQKRFHKSILEDHKDLRDNEHSGMKHQFYGHNSYYFYN", "sequence_length": 590, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e2612144bfe9e0999692eccf7d41253e9a82cf4f6e9329263c0df5ea6a519822", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N865.json", "taxon_id": "9606", "uniprot_accession": "Q8N865", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/spmip4-like-pf15093.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15093", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/spmip4-like-pf15093.yaml" } ], "pfam_ids": [ "PF15093" ], "protein_name": "Sperm-associated microtubule inner protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVIHGRPHCCRNLEGADILSNTFYSNGLHTPYETTIRPTASQARYQELREALPQCRLRWGADREYGGVLPVSLPEEHRPKCEPPRLMSKGHQHYGFGGEIWPKKLPIEQYYYMTQNKKSDVYGNDSLLPKPPNSAVKEICSPYPIEHPYHTHISRGSVFPTFTSPKDLYTGIKARTQQPFPPTVPTKACDTTILKTRGNPYRYELLDFPMDSKKKALTWPGQGVYYDFPKFVEKNKPVFYPKPPKTFAPNSSVNPWDTMSSAKDANIQRNLERSHWLTSYAHDFTGLGPMSPLELDDYHEKELAELTGQIGFDPQPQEKFHPALKTPRPLDGRIARLTQNQRPLEATVQIPPPCPDCTPRVLCAFHTFIPTSAEIMAMNNNLLSGITHKNQDVEEKIKEEQGLMSTCPLPTCYESKDLTSLYDVQSFPKITDTKKTDDLYWRQLEMKPLPISCSKSNHYIDYEPLKSAYRDPYAMCPNPVRLSKSNILQNKTDTADFTFDNFLSKPEFLGMNMESNEETRPLLDWIPRAGVPKHHSNLRNLRNTFSKSMAQKRLHNSIQEEQKDLRDKLQCGMRHQFFGYNGHHFYN", "sequence_length": 588, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "db67f0cf4aa3362b29423399f2090071ce48ceb06a7014183f8c9664e7819937", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D5Y0.json", "taxon_id": "10090", "uniprot_accession": "Q9D5Y0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15093", "short_name": "SPMIP4-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ciroz-beta-domain-ipr049521.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049521", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ciroz-beta-domain-ipr049521.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4556-pf15094.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15094", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4556-pf15094.yaml" } ], "pfam_ids": [ "PF15094" ], "protein_name": "Ciliated left-right organizer ZP-N domains-containing protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWGSVAVVWAICLACIQPAVFPWILPVRSNKDRPRPAHGALTEKVECFSDYMTLQIPSSHVQGLKQWLVGVLRLPGSKRAPNHLDSLLTKCGYLLHPAHEGGFIFRALYSGCFVQKEKANYRLEIRMFQKGAKRLKQSDRYIMRCPMMVARLGEQSVRCHPSFIQVSRPWPPRTDAGQTPWLLSLRGELVASLEDASLMGLEVDIGATMVTIQSPRQELLQRQEVWNTSLELLPLWLVSGSYAYSFEAACPLVSSQPGSEISVHIPKQRLGLVKRGSLVEESLSPRFLQVQQTDTFTVAEDRDFVIVSIPSMRLLQDQPCQKARESPGTQAFYRVDLSLDFAEMDSPVHWTVENFFQCVGSREDSLFSTVTPRTTLPTQSPGWETTPAETPPAASPPLQTPQMAVLEEPPQHFVHQSAKESTKQELAAAFMQITRPARGSWVSMASPSSSAMQEHQGPQTPPEKADLSPHPQTPATLSSEHTEVSQAGPGPSHYVSLAPNSLSTHLSSEITSSLWPSWPSDGPPMLLSSEPSVKLTEVPRATRAGQDSIQPSRSPFPPGELSRETVNSTESTEPIPREPAYIREEFPPFTKSFMSSLAEEGLIFHPDPKRPQERPIVKAEKPLQNDHGPSGEETRHYLDLSTSEPSQEMKELGVDATFTTSRRRQPDARAYLGTSRPELTGRPRVGTAALQTTLHKGLLASTSERPAAPSEGALQLESAPSWPEGWHDLGAAHTASPLSSHTHSPLVPTQAMFPGSDEPGNSLPGSQGSVESRLLPTTDSHQSPEL", "sequence_length": 786, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "63f795c36fd0c84e6838b454135e51bd0afed0b03ddcac3bd26f6734701bacbc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/B1ARY8.json", "taxon_id": "10090", "uniprot_accession": "B1ARY8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ciroz-beta-domain-ipr049521.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049521", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ciroz-beta-domain-ipr049521.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4556-pf15094.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15094", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4556-pf15094.yaml" } ], "pfam_ids": [ "PF15094" ], "protein_name": "Ciliated left-right organizer ZP-N domains-containing protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWGSPALAWAVWLACVQPTVFPWSLSFRSDTDKPSSAAEVLTEASSCWTDTVECFSDYMTLWIPRSHVEGLRRWLARTLHLPGTWRSPDHLDSSLAKCGYFLHLASDGDFLFRVQYSACFVQKEKANYRLEIRIFQKGVMGLERSDRYIMKCPMLRSRLGQESVHCGPMFIQVSRPLPLWRDNRQTPWLLSLRGELVASLEDASLMGLYVDMNATTVTVQSPRQGLLQRWEVLNTSAELLPLWLVSGHHAYSLEAACPPVSFQPESEVLVHIPKQRLGLVKRGSYIEETLSLRFLRVHQSNIFMVTENKDFVVVSIPAAGVLQVQRCQEVGGTPGTQAFYRVDLSLEFAEMAAPVLWTVESFFQCVGSGTESPASTAALRTTPSPPSPGPETPPAGVPPAASSQVWAAGPAAQEWLSRDLLHRPSDALAKKGLGPFLQTAKPARRGQTSASILPRVVQAQRGPQPPPGEAGIPGHPTPPATLPSEPVEGVQASPWRPRPVLPTHPALTLPVSSDASSPSPPAPRPERPESLLVSGPSVTLTEGLGTVRPEQDPAKSPGSPLLLRGLSSGDVAAPEPIMGEPGQASEEFQPLARPWRATLAAEELVSHRSPGEPQETCSGTEVERPRQTGPGLPREGARGHMDLSSSEPSQDIEGPGLSILPARDATFSTPSVRQPDPSAWLSSGPELTGMPRVRLAAPLAVLPMEPLPPEPVRPAALLTPEASSVGGPDQARYLESAPGWPVGQEEWGVAHTSSPPSTQTLSLWAPTGVLLPSLVELEYPFQAGRGASLQQELTEPTLALSAESHRPPELQDSVEGLSERPSR", "sequence_length": 823, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "031e507cb7d5e3f9d662fca3d3273a4f152a7efcc23650b91e2eb927471e98c3", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N9H9.json", "taxon_id": "9606", "uniprot_accession": "Q8N9H9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4556-pf15094.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15094", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4556-pf15094.yaml" } ], "pfam_ids": [ "PF15094" ], "protein_name": "Ciliated left-right organizer protein containing ZP-N domains homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSPSSSMTEGDVECFSEYMELWIHRLRIEGLRLWLSGILRIQVGLVSMENLNHQLSSCGFALHRDLDKNYVFRVMYSGCFVQLEHGNYVIVLNLLKRVSRFGGRTQKFMMKCPAVLAPPNREYIQCDSDSIQVTREIPVDNWNNELDWSLALRGSLVVALEDSSLIQINVEMHKPNITVQGRRDTILSPVQVFASEGHFLPLKLVSGNYAYSMEATCPNGNTSSSNETVLHIYKRRMGLTKRGGYQNETLSVSSVMVEQTDTFSWTETTDFVQLIIPTSYIQQNKECLSQTGEKLQQNFYKIDAVLTFKETNHKMHWTMENTSPCSELLKSHSVYDDPQKANFTTHSPTWTAERPEIPADYTTNLTPSVSPSTTSTALQTADPDTGTTSMPTPQLKTTEVFNTSTPLSSQEVFSSTLYSPNHNSTSSSVHQ", "sequence_length": 432, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9b0bb75b30cf07eda72172384a12409f3e51bb7295b8c9c5018897a01eb20184", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/X1WBN4.json", "taxon_id": "7955", "uniprot_accession": "X1WBN4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15094", "short_name": "DUF4556", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/terb2-pf15101.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15101", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/terb2-pf15101.yaml" } ], "pfam_ids": [ "PF15101" ], "protein_name": "Telomere repeats-binding bouquet formation protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFQGQRGWFCGSVSQDLRQFWVAEGGTISDPRAADFLFSCDASHPDTLRIYQSLDYIEDNATVFHAYYLSAVANAKIKNSVALGHFILPPACLQKEIRRKIGSFIWEQDQHFLIEKHDEVTPNEIKTLRENSELATEHKKELSKSPEKHFIRTPVVEKQMYFPLQNYPVNNMVTGYISIDAMKKFLGELHDFIPGTSGYLAYHVQNEINMSAIKNKLKRK", "sequence_length": 220, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "653f5910c72fe4dbb11a53fcc02d53d2c0837c098d5cf980dae2794d32d063d9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NHR7.json", "taxon_id": "9606", "uniprot_accession": "Q8NHR7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/meiotic-attachment-of-telomere-to-nuclear-envelope-go0070197.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070197", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/meiotic-attachment-of-telomere-to-nuclear-envelope-go0070197.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/terb2-pf15101.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15101", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/terb2-pf15101.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9D494", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15101" ], "protein_name": "Telomere repeats-binding bouquet formation protein 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "59f2b4cab27471ecdf5ecb44ff4eadb2af9df2d30940635c9ea1c7899416bd5b", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MFQGQRGWFCGSVSQDLRQIWEDEGGMVSDVKAADFLFSCDASHPDTLRIYQSLEYIEDNATVFHAYYLAAIANTEMKNSVALGHFVLPPACLQKEIRRKIGSFIWEQDEKFQIEKHDRMASSDKENIRPTPEHKQELSKSAEHHLTRTPVIEKQMCFPLHSYPVNNMVTGYISIDALEKFLGELHDFTPGSSGYLAYHIQDEINMSAIKNKLRRKLS", "sequence_length": 218, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "59f2b4cab27471ecdf5ecb44ff4eadb2af9df2d30940635c9ea1c7899416bd5b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D494.json", "taxon_id": "10090", "uniprot_accession": "Q9D494", "uniprot_release": "2026_03" } ], "pfam_id": "PF15101", "short_name": "TERB2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap141-pf15104.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15104", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap141-pf15104.yaml" } ], "pfam_ids": [ "PF15104" ], "protein_name": "Cilia- and flagella-associated protein 141", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSMEKMGKVEEHFQRALELKKMVHRWRNSHTHCLWQITLSQRRNPYAILRMQDTMVQELALANKQLLMVRQAALHQLFEKEHQQYQQELNEKGKAFYMERL", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3698a471967e5cf6e5d1d91fb4bb34d7fe84bc1a30504a944b1943234250ebea", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q32L75.json", "taxon_id": "9913", "uniprot_accession": "Q32L75", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap141-pf15104.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15104", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap141-pf15104.yaml" } ], "pfam_ids": [ "PF15104" ], "protein_name": "Cilia- and flagella-associated protein 141", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVEKMTKVEESFQKAMGLKKTVDRWRNSHTHCLWQMALGQRRNPYATLRMQDTMVQELALAKKQLLMVRQAALHQLFEKEHQQYQQELNQMGKAFYVERF", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4b73289aac19357ba805c836895251bd595b39f4cdf21fafc6dedd8f4e0356e0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VU69.json", "taxon_id": "9606", "uniprot_accession": "Q5VU69", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap141-pf15104.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15104", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap141-pf15104.yaml" } ], "pfam_ids": [ "PF15104" ], "protein_name": "Cilia- and flagella-associated protein 141", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAEKMTKLEENLQRAVALKKTVDRWRNFHIHCMWQTTLDQRRNLFAALRMKDTKEQELALSNKQLLVVRQAALHELFEKEYQQYQQELNQMGKAFYEERL", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d8a27f939697d1b458c7a8deafae75dc659b75c8bdb586bd77a627318df89d4f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D9D9.json", "taxon_id": "10090", "uniprot_accession": "Q9D9D9", "uniprot_release": "2026_03" } ], "pfam_id": "PF15104", "short_name": "CFAP141", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4559-pf15112.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15112", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4559-pf15112.yaml" } ], "pfam_ids": [ "PF15112" ], "protein_name": "Uncharacterized protein CXorf38 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVSELAARLNCAEYKNWVKAGHCLLLLRSCLQGFIDREVLSFHRGLLAAVPGLGPHATCRGGSRCSPRARQFQPQCQVCAEWKHEILRHHINRNGDVHWGNCKPGLWPKDPWEVAKAFMPRGLADKRGPEECDAVALLSLINSCDHFVVDRKKVTEVIKCRNEIMHSSEMKVSSTWLRDFQIKIQNFLNEFKNIPEIVAVYSRIEQLLTSDWAVHIPEEDERDGCEFEIGSYLSVSQIHEIEIELLKEKLQEMYLQAAEEEMLPEEISNQLDVVKGFLGSNTDLRNGLTEDLQKLESLHLQHQKQTSKDAGRQTPERKA", "sequence_length": 320, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4de96d9340040c152822f40f74a59e1b050253f0bfebc9f644266a040173bb88", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C5K5.json", "taxon_id": "10090", "uniprot_accession": "Q8C5K5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4559-pf15112.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15112", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4559-pf15112.yaml" } ], "pfam_ids": [ "PF15112" ], "protein_name": "Uncharacterized protein CXorf38", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLSELAARLNCAEYKNWVKAGHCLLLLRSCLQGFVGREVLSFHRGLLAAAPGLGPRAVCRGGSRCSPRARQFQPQCQVCAEWKREILRHHVNRNGDVHWGNCRPGRWPVDAWEVAKAFMPRGLADKQGPEECDAVALLSLINSCDHFVVDRKKVTEVIKCRNEIMHSSEMKVSSTWLRDFQMKIQNFLNEFKNIPEIVAVYSRIEQLLTSDWAVHIPEEDQRDGCECEMGTYLSESQVNEIEMQLLKEKLQEIYLQAEEQEVLPEELSNRLEVVKEFLRNNEDLRNGLTEDMQKLDSLCLHQKLDSQEPGRQTPDRKA", "sequence_length": 319, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "38b31412c01412e3c8d1d6add407ab10594d7ff974db3ef94d79659ca813ac5c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TB03.json", "taxon_id": "9606", "uniprot_accession": "Q8TB03", "uniprot_release": "2026_03" } ], "pfam_id": "PF15112", "short_name": "DUF4559", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4560-pf15118.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4560-pf15118.yaml" } ], "pfam_ids": [ "PF15118" ], "protein_name": "Small integral membrane protein 10-like protein 2A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAASAALSAAAAAAALSGLAVRLSRSAAARGSYGAFCKGLTRTLLTFFDLAWRLRMNFPYFYIVASVMLNVRLQVRIE", "sequence_length": 78, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "693da0ad2b7fd8685da070e0d507c8cd291148d3523f08a3d15303e9c6e039b2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DMW4.json", "taxon_id": "9606", "uniprot_accession": "P0DMW4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4560-pf15118.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4560-pf15118.yaml" } ], "pfam_ids": [ "PF15118" ], "protein_name": "Small integral membrane protein 10-like protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATALSGLAVRLSRSAAARSYGVFCKGLTRTLLIFFDLAWRLRINFPYLYIVASMMLNVRLQVHIEIH", "sequence_length": 68, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "835db523cc9ebdc1506e09e63e2ac4d02e35d9f0bf4ff9f35a469cd0a6213d8b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5U425.json", "taxon_id": "10090", "uniprot_accession": "Q5U425", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4560-pf15118.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4560-pf15118.yaml" } ], "pfam_ids": [ "PF15118" ], "protein_name": "Small integral membrane protein 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEALGSGHYVGGSIRSMAAAALSGLAVRLSRPQGTRGSYGAFCKTLTRTLLTFFDLAWRLRKNFFYFYILASVILNVHLQVYI", "sequence_length": 83, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "015a49a7973defcf595e39db17b0d740348362c5ebcdeb42d81e24392b011e54", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q96HG1.json", "taxon_id": "9606", "uniprot_accession": "Q96HG1", "uniprot_release": "2026_03" } ], "pfam_id": "PF15118", "short_name": "DUF4560", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4566-pf15130.yaml" } ], "pfam_ids": [ "PF15130" ], "protein_name": "Uncharacterized protein C6orf62", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDPNSRKKQALNRLRAQLRKKKESLADQFDFKMYIAFVFKEKKKKSALFEVSEVIPVMTNNYEENILKGVRDSSYSLESSLELLQKDVVQLHAPRYQSMRRDVIGCTQEMDFILWPRNDIEKIVCLLFSRWKESDEPFRPVQAKFEFHHGDYEKQFLHVLSRKDKTGIVVNNPNQSVFLFIDRQHLQTPKNKATIFKLCSICLYLPQEQLTHWAVGTIEDHLRPYMPE", "sequence_length": 229, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "40f6c6d5c3b810fbdebe2d95da2f58d4df68a16b91667903fab557c7252cd71a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9GZU0.json", "taxon_id": "9606", "uniprot_accession": "Q9GZU0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15130", "short_name": "DUF4566", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15131", "short_name": "DUF4567", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4568-pf15132.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15132", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4568-pf15132.yaml" } ], "pfam_ids": [ "PF15132" ], "protein_name": "Uncharacterized protein C16orf95", "registry_status": 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], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-toll-like-receptor-7-signaling-pathway-go0034157.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034157", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-toll-like-receptor-7-signaling-pathway-go0034157.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-toll-like-receptor-8-signaling-pathway-go0034161.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0034161", "section": "canonical_examples", "url": 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"uniprot_accession": "Q29S20", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cep15-like-pf15134.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15134", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cep15-like-pf15134.yaml" } ], "pfam_ids": [ "PF15134" ], "protein_name": "Centrosomal protein 15", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLFTQEIHLSKRHEEILSQRLMLLQKMKNKFGDENTERASLLQATETASRRNLRLLKDIDAAEEAFQTKLIPHPQPSMLSLETRYWASVEEHIPKWELFLLGRAPYPIGAENQNEVPFVQTEAKL", "sequence_length": 127, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ce09251c888b4482203bdb1827099e5f1c00081316eb7292088ca40ad840d9ca", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BGD0.json", "taxon_id": "10090", "uniprot_accession": "Q8BGD0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cep15-like-pf15134.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15134", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cep15-like-pf15134.yaml" } ], "pfam_ids": [ "PF15134" ], "protein_name": "Centrosomal protein 15", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSLFAQEIRLSKRHEEIVSQRLMLLQQMENKLGDQHTEKASQLQTVETAFKRNLSLLKDIEAAEKSLQTRIHPLPRPEVVSLETRYWASVEEYIPKWEQFLLGRAPYPFAVENQNEAENTIQNEAQR", "sequence_length": 128, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b8e3cf3e7c26be375a0f26c93a1cf448084a3cf11275efe8938ee8fcd4bde6f4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HBI5.json", "taxon_id": "9606", "uniprot_accession": "Q9HBI5", "uniprot_release": "2026_03" } ], "pfam_id": "PF15134", "short_name": "CEP15-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ecpip-pf15137.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15137", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ecpip-pf15137.yaml" } ], "pfam_ids": [ "PF15137" ], "protein_name": "Exosomal polycystin-1-interacting protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDWLMREKQEHTSPCWTRMTSPSSFCLLLLQALGIVALGHFTKAQNNTLIFTKGNTIRNCSCPVDIRDCDYSLANLICSCKSILPSAMEQTSYHGHLTIWFTDISTLGHVLKFTLVQDLKLSLCGSSTFPTKYLAICGLQRLRIHTKARHPSRGQSLLIHSRREGSSLYKGWQTCMFISFLDVALFNGDSSLKSYSIDNISSLASDFPDFSYFKTSPMPSNRSYVVTVIY", "sequence_length": 230, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2ac6ab22674ac25bb288e585c1cdaaa8a099e1568206e96b3ca1df68a9a991bd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D4G1.json", "taxon_id": "10090", "uniprot_accession": "Q9D4G1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ecpip-pf15137.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15137", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ecpip-pf15137.yaml" } ], "pfam_ids": [ "PF15137" ], "protein_name": "Exosomal polycystin-1-interacting protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPPSRHCLLLISTLGVFALNCFTKGQKNSTLIFTRENTIRNCSCSADIRDCDYSLANLMCNCKTVLPLAVERTSYNGHLTIWFTDTSALGHLLNFTLVQDLKLSLCSTNTLPTEYLAICGLKRLRINMEAKHPFPEQSLLIHSGGDSDSREKPMWLHKGWQPCMYISFLDMALFNRDSALKSYSIENVTSIANNFPDFSYFRTFPMPSNKSYVVTFIY", "sequence_length": 219, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1fa0a14baebe7b10a3eea59436d570a7b66c24e9953e7b5ef6d4bc69b731ee01", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NYP8.json", "taxon_id": "9606", "uniprot_accession": "Q9NYP8", "uniprot_release": "2026_03" } ], "pfam_id": "PF15137", "short_name": "ECPIP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap95-pf15139.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15139", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap95-pf15139.yaml" } ], "pfam_ids": [ "PF15139" ], "protein_name": "Cilia- and flagella-associated protein 95", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSSDSSCQEWCSHGQYWLELGPTDLMERKGSLTLRSHHKKYSKPVLVYSWHRDRETYPKDYDIEGPEEVKKLCNSTYRRLGTSEPPVWISETREKMAQVCLNTKLAKIKSKALLNEETMNSGIIERDTGLPATGFGALFTRHSPDWSKMCTLTTYAEEYAPPYEYQPLGDPCQDDDYSIVHRKCRSQFTDLDGSKRVGINTWHDESGIYANSYVKRKLYSLTGGPIAPFLK", "sequence_length": 232, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a2ebf42203cdc78caabdc4c577022e3b35fa76218743d7039c95048fbc979020", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q32L77.json", "taxon_id": "9913", "uniprot_accession": "Q32L77", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap95-pf15139.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15139", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap95-pf15139.yaml" } ], "pfam_ids": [ "PF15139" ], "protein_name": "Cilia- and flagella-associated protein 95", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSLDRSCQDWCDRKQHWLEIGPPDLVERKGSLTLRSHHKKYSKPVLVYSWHRDREAFPKGYDIEGPEKVKKLCNSTYRRLGTDESPIWTSETHEKLSQMCLNTEWVEMKSKALLNEETVSSGIIERVTGLPATGFGAVFPRHPPDWSKMCALTTYSEDYVPPYDYQPHAYPCQDDYSIVHRKCRSQFTDLNGSKRFGINTWHDESGIYANSDVKQKLYPLTSGPIVPI", "sequence_length": 229, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9b53cb14996c121720394d9ed76725030c4079a468c938d88f6c67cf7dfc3bf7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VTT2.json", "taxon_id": "9606", "uniprot_accession": "Q5VTT2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap95-pf15139.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15139", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap95-pf15139.yaml" } ], "pfam_ids": [ "PF15139" ], "protein_name": "Cilia- and flagella-associated protein 95", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTFDSQCHECFESKERWYEIGPTDLLERKGSLTLRSHHKKYSEPVLVYSWHRNREAFPKDYDIESLETVKNLCMSTYKRFGSDSPRWMSEAREQMAQVLVNKDLVEKKKTGLLDEETLCPGILERDPELPPTGFRDVPMESPPDPRKPCFSTTYSEDFTPQYEYPPPACPRREEYSIVHRKCRSQFTDLNGSKRLGINTWHDESGIYANSEAKQKLYALARNPIVPF", "sequence_length": 228, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d2eb8c95e7f8355adbd03fc0ef353df05f33f9fb704dd9828b78d9cddf045efd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CQC3.json", "taxon_id": "10090", "uniprot_accession": "Q9CQC3", "uniprot_release": "2026_03" } ], "pfam_id": "PF15139", "short_name": "CFAP95", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/uqcc3-pf15141.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/uqcc3-pf15141.yaml" } ], "pfam_ids": [ "PF15141" ], "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSLRKMLISVAMLGAGAGVGYALLVIVTPGERRKQEMLKEMPLQDPRSREEAARTQQLLLATLQEAATTQENVAWRKNWMVGGEGGAGGRSP", "sequence_length": 93, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "231df0e45bbb0b574052778032807249a9a9ff6e9b380aa6a15eb20e90a2f81d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6UW78.json", "taxon_id": "9606", "uniprot_accession": "Q6UW78", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/uqcc3-pf15141.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/uqcc3-pf15141.yaml" } ], "pfam_ids": [ "PF15141" ], "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVARKALVAVAVLGGGAGVGSILFALVTPGELQKQSMLQEMPERDSRRRDEAVRTTELVMATLKDAAATKENVAWRRNWTVSGDGRSA", "sequence_length": 89, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "39e55be5e9e4d0aadc03bd9e45e374257fbbf3ef60bb893ecbcf86ec6f70219c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8K2T4.json", "taxon_id": "10090", "uniprot_accession": "Q8K2T4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15141", "short_name": "UQCC3", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4575-pf15143.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15143", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4575-pf15143.yaml" } ], "pfam_ids": [ "PF15143" ], "protein_name": "Putative uncharacterized protein FLJ45355", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGVPRAREGRGAGSQSPPRGRCLHPFRWGSQDRGRGEGLALSPLLPGVPPPPAMGVPRDRGGRGAGSQSTPRGGCLLPPRLGSQQPAGEEGLVLSPRLAGDASPCCDGSPKSQGVKRGWLSVPTSRGVPPPPAIGVLIARGGRGAGSQSLPRGWSFTPLRWGS", "sequence_length": 163, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c91866e4af283ee0487f436654228f02c01bf5a4e5e629a34d3dc58f2ae8b147", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZSN1.json", "taxon_id": "9606", "uniprot_accession": "Q6ZSN1", "uniprot_release": "2026_03" } ], "pfam_id": "PF15143", "short_name": "DUF4575", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4576-pf15144.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15144", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4576-pf15144.yaml" } ], "pfam_ids": [ "PF15144" ], "protein_name": "Uncharacterized protein C5orf46 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVSGLRLTIVWGLLVLILTCQADDKPEGKPDEQPHDSGKNSEPAFPKFLNILGSDIIENAVEFILRSMTRSTEFLEHGDKQGEHSSK", "sequence_length": 88, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2d3cf29665fcb32e1352ccd551be9261d745754cd0155f65d2313a946026d163", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3T146.json", "taxon_id": "9913", "uniprot_accession": "Q3T146", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4576-pf15144.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15144", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4576-pf15144.yaml" } ], "pfam_ids": [ "PF15144" ], "protein_name": "Uncharacterized protein C5orf46 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVSVLRLMVVLGLSALILTCRADDNPNENDNPDSKPDDSSKNPEPGFPKFLSILGSEIIENAVDFILRSMSRGSSFMELEGDPGQQPSKVTS", "sequence_length": 93, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "edddcb9bd2e0277cab9cfabe1e2a9cbc9f3cdd83026cc03892a67720afe21e46", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3V2D2.json", "taxon_id": "10090", "uniprot_accession": "Q3V2D2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4576-pf15144.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15144", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4576-pf15144.yaml" } ], "pfam_ids": [ "PF15144" ], "protein_name": "Uncharacterized protein C5orf46", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVSVLRLTVVLGLLVLFLTCYADDKPDKPDDKPDDSGKDPKPDFPKFLSLLGTEIIENAVEFILRSMSRSTGFMEFDDNEGKHSSK", "sequence_length": 87, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fc44d539cedbe6b5e1fc023535840a4017fb5e02322689a3140dd4993732d468", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6UWT4.json", "taxon_id": "9606", "uniprot_accession": "Q6UWT4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15144", "short_name": "DUF4576", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4577-pf15145.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15145", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4577-pf15145.yaml" } ], "pfam_ids": [ "PF15145" ], "protein_name": "Leucine-rich single-pass membrane protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRSSQDSGSRSIPEDRKLYVVDSINDLNKLNLCPAGSQQLFPLEEKLQDISTDSGNGSRSLFLVGLIIVLIISLALVSFVIFLIVQTENKMEDVSRRLAAEGKDIDDLKKINSIIVKRLNQLDSEQS", "sequence_length": 128, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "daa1aaf9d6ff3c08d5348dd9d6b5ab0e7d5a4e6727e5ccd24e8402670d606c52", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5PK14.json", "taxon_id": "9913", "uniprot_accession": "A5PK14", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4577-pf15145.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15145", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4577-pf15145.yaml" } ], "pfam_ids": [ "PF15145" ], "protein_name": "Leucine-rich single-pass membrane protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTHSSQDAGSHGIQEEGRLYVVDSINDLNKLSLCPMESQHLFSLEDKIPNAGTAPGNGRRGLFFVGLLLVLTVSLALVFFAIFLIIQTGNQMEDVSRRLTAEGKDIDDLKKINNMIVKRLNQLDSEQN", "sequence_length": 128, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ab5f9e25ed499582c4a4a0d88652508c66dad33056af8c7640e4db01f11d6a57", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UQS2.json", "taxon_id": "10090", "uniprot_accession": "Q3UQS2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"uniprot_accession": "Q8N8F7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15145", "short_name": "DUF4577", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4578-pf15147.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4578-pf15147.yaml" } ], "pfam_ids": [ "PF15147" ], "protein_name": "Uncharacterized protein C11orf52", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGNRVCCGGSWSCPSTFQKKKKTGSQTRRTLKPQPQQLQQNLPKGHETTGHTYERVLQQQGSQERSPGLMSEDSNLHYADIQVCSRPHAREVKHVHLENATEYATLRFPQATPRYDSKNGTLV", "sequence_length": 123, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6238d2694cebc6d386850c95a9b36e0b3f5a21a2ba232fa4d9fa1f1bce811d67", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96A22.json", "taxon_id": "9606", "uniprot_accession": "Q96A22", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4578-pf15147.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4578-pf15147.yaml" } ], "pfam_ids": [ "PF15147" ], "protein_name": "Uncharacterized protein C11orf52 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGNRLCCGGTWSCPSTFQKKSKTGSHPRPTLSILKQQQLWQNGTKDYETTAPTYEQVLYPPASQKKTSNSTSEESDLHYADIHVLRQIRPHSLHTVKCLHSESATEYATLRFPQATPQYDSNNGTLV", "sequence_length": 127, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1a106e9ad29edd545ac6de7dab208023d8c16a1fd561e39d23509b57d77185ec", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D8L0.json", "taxon_id": "10090", "uniprot_accession": "Q9D8L0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15147", "short_name": "DUF4578", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem249-pf15158.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15158", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem249-pf15158.yaml" } ], "pfam_ids": [ "PF15158" ], "protein_name": "Cation channel sperm-associated auxiliary subunit theta", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLFIICLVFISCNVLREVKYQETWCFPAYGMVIGLWLMLSSIPQRRLVLNHTRGMYHFSIQGRTVCQGPMHLVYVRLALSSDAYGGRFFQLVLCGHKLEPLVLVQLSERYEQMEFLGRHLARKLNINYFDYLASSYRHVVRHWPLGASFSPGIVQRKTQVYTKSSVNDLDV", "sequence_length": 171, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7935ae782659cf25f3739d98d1f6f327d8a8d597041ff6c007d35e721ac20bdc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A2R8VHF7.json", "taxon_id": "10090", "uniprot_accession": "A0A2R8VHF7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem249-pf15158.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15158", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem249-pf15158.yaml" } ], "pfam_ids": [ "PF15158" ], "protein_name": "Cation channel sperm-associated auxiliary subunit theta", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKGRAGSLPTTSIGWRFQLWFLGLTCPERHLARRLKNNSFYPFVQQEPNVFVLEYYLDTLWKGMLLFIISVVLVSFSSLREVQKQETWVFLVYGVGVGLWLVISSLPRRRLVLNHTRGVYHFSIQGRTVCQGPLHLVYVRLALSSDAHGRCFFHLVLGGHRLEPLVLVQLSEHYEQMEYLGRYIARKLNINYFDYLATSYRHVVRHWPPPGAGTVMGKSPMGHKPSSSQSSLEV", "sequence_length": 235, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e247c162a24e5efd4a36390d35df50d9456875214c510cf49608fd7d8e0fc0dc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2WGJ8.json", "taxon_id": "9606", "uniprot_accession": "Q2WGJ8", "uniprot_release": "2026_03" } ], "pfam_id": "PF15158", "short_name": "TMEM249", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/scre-pf15162.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15162", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/scre-pf15162.yaml" } ], "pfam_ids": [ "PF15162" ], "protein_name": "Protein SPO16 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAMDERRGKERVQWTTTIIISSSLKSYEIATALENRSHKVRYSDTLESGSIVFSLSGVAFLLMDAKECMTSAEEIFVTKIEKFINIHQNSFLVLFAPLHGPEEWSLMFRIHQRFLGSNLRILPVHNTVNALDLMCTIAKTTSKPHIDSICYRMITTKAYIIEQSPVWRTLQKIKLSSDSVSADSGE", "sequence_length": 186, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "78e2048bfd956b388439c62cf0ff62ae858eb341875290fa9e0ebd6477aa0228", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q3KQP7.json", "taxon_id": "10090", "uniprot_accession": "Q3KQP7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/scre-pf15162.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15162", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/scre-pf15162.yaml" } ], "pfam_ids": [ "PF15162" ], "protein_name": "Protein SPO16 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAESGKEKIKWTTTIIISSSLKSYEVATALENRSHKVRYSDSVENGSIIFSLSGVAFLLMDTKECLLSTEEIFLAKIEKFINIHQNSFLVLSAALHGPEEWKLMFRIQQRFLGCNLRILPVHNTVNAINLMCTIAKTTSKPYIDSICYRMITAKAYIIEQSPVWKTLQKIKLNSDSVNPN", "sequence_length": 180, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "234d0de53bdfa7f209b9d969aa9e1c2758df052e3cf550c6497b85007f5cc744", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VVC0.json", "taxon_id": "9606", "uniprot_accession": "Q5VVC0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15162", "short_name": "SCRE", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Xenopus laevis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4581-pf15167.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15167", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4581-pf15167.yaml" } ], "pfam_ids": [ "PF15167" ], "protein_name": "Maturin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDFQQLADVADKWCSNTPFDLIATEETERRMDFYADPGVSFYVLCPESGCGDHFHVWSESEDCLPFLQLAQDYISSCGKKTLHEILEKVFKSFRPLLGLPDVDDDTFEEYNADVEEEEPEADHQQMGVSQQ", "sequence_length": 131, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "77cae448f4896dd5185e5e660304aa5fb112c3cee9479a0c67e3dfb6760d11fb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7ZX36.json", "taxon_id": "8355", "uniprot_accession": "Q7ZX36", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-signaling-go0023051.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0023051", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-signaling-go0023051.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4581-pf15167.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15167", "section": "canonical_examples", "url": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8N3F0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15167" ], "protein_name": "Maturin", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "895f97cd750f8f04109e25a523729dc23c57429159c55f4426f53bd82a57d2a5", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": 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"link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cybc1-eros-pf15169.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15169", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cybc1-eros-pf15169.yaml" } ], "pfam_ids": [ "PF15169" ], "protein_name": "Cytochrome b-245 chaperone 1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGYMIVEKHTSELLHLKRSPGIRSWSILVGIASVGLAAAYYSSDSILWKMFYVTGCFFVALQNMEEWEEAVFNKSKNEIELKTFSLYTMLLTLWKRGHEKVLLDLRHLRDVSVQEERVRYLGKGYLVVLRLATGFSYPLTQSATLGSRSDVEALAALLKRFLGLEELQQRLADDDYPDDDDGIEDLGLGDSSDSQDDPDGDDDEEH", "sequence_length": 206, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "30ff1d4eea2f8625208eaa48dbafda84396b82a1988412688076722678741403", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6DGA7.json", "taxon_id": "7955", "uniprot_accession": "Q6DGA7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/respiratory-burst-after-phagocytosis-go0045728.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0045728", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/respiratory-burst-after-phagocytosis-go0045728.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cybc1-eros-pf15169.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15169", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cybc1-eros-pf15169.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9BQA9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15169" ], "protein_name": "Cytochrome b-245 chaperone 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e93c1ef3b6bda4c708d89ad50df9612b865a640757db36750b0ddac6c2036b56", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MYLQVETRTSSRLHLKRAPGIRSWSLLVGILSIGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFDKSTGKVVLKTFSLYKKLLTLFRAGHDQVVVLLHDVRDVSVEEEKVRYFGKGYMVVLRLATGFSHPLTQSAVMGHRSDVEAIAKLITSFLELHCLESPTELSQSSDSEAGDPASQS", "sequence_length": 187, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e93c1ef3b6bda4c708d89ad50df9612b865a640757db36750b0ddac6c2036b56", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BQA9.json", "taxon_id": "9606", "uniprot_accession": "Q9BQA9", "uniprot_release": "2026_03" } ], "pfam_id": "PF15169", "short_name": "Cybc1_Eros", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/female-meiosis-i-go0007144.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0007144", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/female-meiosis-i-go0007144.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/meioc-pf15189.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15189", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/meioc-pf15189.yaml" } ], "pfam_ids": [ "PF15189" ], "protein_name": "Meiosis-specific coiled-coil domain-containing protein MEIOC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8c1aee41b104c3a2c2d7bb781500ce7eaafee766563bb4ebe1ef4b04a0cf1de4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2AG06.json", "taxon_id": "10090", "uniprot_accession": "A2AG06", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/female-meiosis-i-go0007144.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0007144", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/female-meiosis-i-go0007144.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/germline-cell-cycle-switching-mitotic-to-meiotic-cell-cycle-go0051729.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0051729", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/germline-cell-cycle-switching-mitotic-to-meiotic-cell-cycle-go0051729.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/meioc-pf15189.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15189", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/meioc-pf15189.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/phosphopantetheine.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00012", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/phosphopantetheine.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A2RUB1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15189" ], "protein_name": "Meiosis-specific coiled-coil domain-containing protein MEIOC", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6dbc3acfab79a7876f7c1ba3f135f072874810690095aa1a2ddab7d0b4303b4f", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEVRRGDTCPRPHPSGLREEGLEPKVAFPGGANRCWNLGADAGSRLTDVFGSVMLTGSASFYDCYTSQSEDNVDLRQTYTPFSSTEYSSSVDSSLFCAPWSTYGDDIKQPSNSQISIKNRIQTERNDYGSETDLYGLVSNILEEQDKSQPYFAEGTCSSNLKSVWPMNTSRFADHHDLLTETKRPIDTVISQQAFYSDESVSAMEKQYLRNSNLTPQQKIDELHHGFTGLDLEEQWMYPSRSDHSNCHNIQTNDTAKTTFQEYPLIKNCFTPQTGLSDIMKESGVDIYHYGRDRICTKGLEAPLQQKRAEMFLSQFNRYNENVDYCRYPEYVHPNKAKLNKCSNFSVQDSKKLANGTPETPTVEADTYTKLFQVKPANQKKMEETIPDQQNFTFPKTTPHLTEKQFAKEAVFTADFGLTSEYGLKPHTACPANDFANVTEKQQFAKPDPPHSEYFKSVNLLSNSATSSGGINLNRPTWMNVQTKNNTPIPYRNQGNLMKLNSHLSAASKGSNHSSDFPQLSSTNLTPNSNLFQKYCQENPSAFSSFDFSYSGAERIQSVNHIEGLTKPGEENLFKLVTDKKIKQPNGFCDNYSAQKYGIIENVNKHNFQAKPQSGHYDPEEGPKHLDGLSQNTYQDLLESQGHSNSHRTRGGDNSRVNRTQVSCFSNNYMMGDLRHNQCFQQLGSNGFPLRSTHPFGHSVVPLLDSYDLLSYDDLSHLYPYFNMMYGDNSFSGLMPTFGFQRPIKTRSGPASELHIRLEECCEQWRALEKERKKTELALAKNYPGKKVSSTNNTPVPRLTSNPSRVDRLIVDELRELARVVTLLGKMERLRSSLLHASISTALDRHLESIHIVQSRRKDEIVNASNRQRQGVPRCQDDRDVFALASAIKEMCVATRKTRTALWCALQMTLPKTASTADVVKPLQDTVNCEDKVHESINSSNPMNQRGETNKH", "sequence_length": 952, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6dbc3acfab79a7876f7c1ba3f135f072874810690095aa1a2ddab7d0b4303b4f", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/A2RUB1.json", "taxon_id": "9606", "uniprot_accession": "A2RUB1", "uniprot_release": "2026_03" } ], "pfam_id": "PF15189", "short_name": "MEIOC", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem251-pf15190.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15190", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem251-pf15190.yaml" } ], "pfam_ids": [ "PF15190" ], "protein_name": "Lysosomal enzyme trafficking factor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKAPDCSELSDSCSLAGGTGRFSGPLHRAWRMMNFRQRMGWIGVGLYLLASAAAFYYVFEINETYNRLALEHILQHPEEPREGTTWTHSLKARLLSLPFWLWTIIFLIPYLQMFLFLYSCTRADPKTVGYCIIPICLAVICNRHQAFVKASNQISRLQLIDT", "sequence_length": 163, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a7537c5f83a21af9b65f23106dce7934cf688d6a881fbeb7e1eb60c03fd4a06b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BH26.json", "taxon_id": "10090", "uniprot_accession": "Q8BH26", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem251-pf15190.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15190", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem251-pf15190.yaml" } ], "pfam_ids": [ "PF15190" ], "protein_name": "Lysosomal enzyme trafficking factor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKPPDYSELSDSLTLAVGTGRFSGPLHRAWRMMNFRQRMGWIGVGLYLLASAAAFYYVFEISETYNRLALEHIQQHPEEPLEGTTWTHSLKAQLLSLPFWVWTVIFLVPYLQMFLFLYSCTRADPKTVGYCIIPICLAVICNRHQAFVKASNQISRLQLIDT", "sequence_length": 163, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "179449476bfe2265b9e7dbb6cecd79f097ddcd26a1f41467377ea2117849dc1a", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N6I4.json", "taxon_id": "9606", "uniprot_accession": "Q8N6I4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15190", "short_name": "TMEM251", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/elongin-complex-go0070449.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0070449", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/elongin-complex-go0070449.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/epop-pf15223.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15223", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/epop-pf15223.yaml" } ], "pfam_ids": [ "PF15223" ], "protein_name": "Elongin BC and Polycomb repressive complex 2-associated protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METLCPAPRLAVPASPRGSPCSPTPRKPCRGTQEFSPLCLRALAFCALAKPRASSLGPGPGELAARSPVLRGPQAPLRPGGWAPDGLKHLWAPTGRPGVPNTAAGEDADVAACPRRGEEEEGGGGFPHFGVRSCAPPGRCPAPPHPRESTTSFASAPPRPAPGLEPQRGPAASPPQEPSSRPPSPPAGLSTEPAGPGTAPRPFLPGQPAEVDGNPPPAAPEAPAASPSTASPAPAAPGDLRQEHFDRLIRRSKLWCYAKGFALDTPSLRRGPERPPAKGPARGAAKKRRLPAPPPRTAQPRRPAPTLPTTSTFSLLNCFPCPPALVVGEDGDLKPASSLRLQGDSKPPPAHPLWRWQMGGPAVPEPPGLKFWGINMDES", "sequence_length": 379, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79d5385742642bb27ad28c6a76b4cb1eeecfc893fc4335619d0d14fbe6e24530", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6NHQ4.json", "taxon_id": "9606", "uniprot_accession": "A6NHQ4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/dachshund-homology-domain-found-in-ski-dach-domain-containing-protein--cd21082.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd21082", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/dachshund-homology-domain-found-in-ski-dach-domain-containing-protein--cd21082.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/epop-pf15223.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15223", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/epop-pf15223.yaml" } ], "pfam_ids": [ "PF02437", "PF15223" ], "protein_name": "SKI/DACH domain-containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDLKSGFEEVDGVRLGYLIIKGKQMFALSQVFTDLLKNIPRTTVHKRMDHLKVKKHHCDLEELRKLKAINSIAFHAAKCTLISREDVEALYTSCKTERVLKTKRRRVGRALATKAPPPERAAAASPRPGFWKDKHQLWRGLSGAARPLPISAQSQRPGAAAARPAAHLPQIFSKYPGSHYPEIVRSPCKPPLNYETAPLQGNYVAFPSDPAYFRSLLCSKHPAAAAAAAAAAAAAAAAAAAAAYYQVSAAGPQPKAAAGAGGPGSLSYRCKRKRGGAKDCLLAPHAGARRLLLLPRSYKAKAAAAAAAAAAAAAAAAGATCLERFHLVNGFCPPPHHHHHHHHHHHHHHHRAQPPQQSHHPPHHHRPQPHLGSFPESCSSDSESSSYSDHAANDSDFGSSLSSSSNSVSSEEEEEEGEEEEEEEEEEGGSGASDSSEVSSEEEDSSTESDSSSGSSQVSVQSIRFRRTSFCKPPSVQAQANFLYHLASAAAATKPAAFEDAGRLPDLKSSVKAESPAEWNLQSWAPKASPVYCPASLGSCFAEIRNDRVSEITFPHSEISNAVKRTDLTINCLAEGASSPSPKTNNAFPQQRILREARKCLQTTPTTHCADNNTIAARFLNNDSSGAEANSEKYSKILHCPEFATDLPSSQTDPEVNAAGAAATKAENPCTDTGDKTLPFLHNIKIKVEDSSANEEYEPHLFTNKLKCECNDTKGEFYSVTESKEEDALLTTAKEGFACPEKETPSLNPLAQSQGLSCTLGSPKPEDGEYKFGARVRKNYRTLVLGKRPVLQTPPVKPNLKSARSPRPTGKTETNEGTLDDFTVINRRKKVASNVASAVKRPFHFMANFPCPPSLIIGRDGDLWPAYSLNTTKDSQTPHKAHPIWKWQLGGSAIPLPPSHKFRKFNS", "sequence_length": 908, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ef40a303de0fadf770fb5268a5329759cb2476a1b6d23eca36e2b3536dbd935b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q1XH10.json", "taxon_id": "9606", "uniprot_accession": "Q1XH10", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/epop-pf15223.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15223", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/epop-pf15223.yaml" } ], "pfam_ids": [ "PF15223" ], "protein_name": "Elongin BC and Polycomb repressive complex 2-associated protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METLCPPPRLAVPASPRGSPCSPTPLKPRRGTPEFSPLCLRALAFCALAKPRPSSLGLGPGELAPRTPVLLGPPASPCTGGWAADGLKHLGGQAGRPSDVSSPAREDADVAVCPGGGEEEEGGGGFPHFGAGSCAPPGRCPAPLRPQDSPTNPAWSPPRPARGLDAASSPPLEPGSPPPSPPAGLSPEPAPSEQPVPASEAPGGGDPAPTAPEAPALSPSTADAAPDPPRDLRQEHFNRLIRRSKLWCYAKGFALDTPSLRRGPERPAAKARGAAKKRRRPAPPPPSVQPRRPVPTLPTSSTFSLLDCFPCPPALVVEENGDLGPASSLRLQGDAKPPPAHPLWKWQMGGPAVPEPPGLKSWWVNLEEL", "sequence_length": 369, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0de5ed176c91a6b9a140ec6c019f5ef3c7cd1e156c5580c0784959c90cf12173", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7TNS8.json", "taxon_id": "10090", "uniprot_accession": "Q7TNS8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/dachshund-homology-domain-found-in-ski-dach-domain-containing-protein--cd21082.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd21082", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/dachshund-homology-domain-found-in-ski-dach-domain-containing-protein--cd21082.yaml" } ], "pfam_ids": [ "PF02437", "PF15223" ], "protein_name": "SKI/DACH domain-containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDLKSGFEEVDGVRLGYLIIKGKQMFALSQVFTDLLKNIPRTTVHKRMDHLKVKKHHCDLEELRKLKAINSIAFHAAKCTLISREDVEALYTSCKTERVLKTKRRRVGRALATKAPPPERAAAASPRPAFWKDKHQLWRGLSGAARPLPISAQSQRPGAAAARPAAHLPQIFSKYPGSHYPEIVRSPCKSSLNYETAQLQGNYVAFHSDPAYFRSLLCSKHPAAAGATCLERFHLVNSFCPPPHHHHHHHHHHHHHHHRAQQPTPSHHPSHHHRPQPHLGSFPESCSSDSESSSYSDHAANDSDFGSSLSSSSNSVSSEEEEEEGEEEEEEEEEEEGGSGASDSSEISSEEEDSSTESDSSSGSSQVSVQSIRFRRTSFCKPPSVQAQANFLYHLASAAAATKPAAFEDAGRLPDLKSSVKAESPEEWSLQSWAPKGTPVYCPASLGSCFPEIRNDRVSEITFPHSEISSTVKRTDLTINCHAEGASSPSPKTNNVFPQQRILREARKCLQATPTTHCAENSTIAARFLNNDSCGTTANSGKDSKIPHCPEFATDLPSLQSDPRVDTATAAAAAAAATKAESLCTGTGDKTLPFLHNIKIKVEDSSANEEYEPELITNKLKWECNDAEGEFYNMTEKKEEDALVPTAKEGFACPEKETPSLNPLAQSQGLSCTLGSPKPEDGEYKFGARVRKNYRTLVLGKRPVLQTPPVKPNLKSARSPRPTGKTETHEGTLDDFTVLNRRKKVASNVASAVKRPFNFMANFPCPPSLIIGKDGDLWPAYSLNTTKDSQPPHKAHPIWKWQLGGSAIPLPPSHKFRKFNS", "sequence_length": 822, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5907f522f7c96ef93eb63036ba01c066459d9d46029d5fcfef851b07732d017e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q80YR3.json", "taxon_id": "10090", "uniprot_accession": "Q80YR3", "uniprot_release": "2026_03" } ], "pfam_id": "PF15223", "short_name": "EPOP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4585-ipr027838.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4585-ipr027838.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4585-pf15232.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4585-pf15232.yaml" } ], "pfam_ids": [ "PF15232" ], "protein_name": "Cardiac-enriched FHL2-interacting protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMQGNKKCTDGFSDTSSIGSVLDEADREVSNLTDRAFRSLCISEDTSFHDSDLALSPDVTSQVSGTFHQETVGHANRKSGIWSQLPSQGTEHSGWAATFQQQPKYVQGEEKYPKTSPLPTPVQRRLEVPISGLRSSSKPISKVSSLIRSFDRTETQSCDSRPPPSKPPALKNPPKFAHPPESGVNFCFDSAFLTVRRVPAEVSNTHQGSHQSGRAPGEQESPKNPEIASHSSDSLLRTPDHVAGSFEPRYPSPPLKPATAEPGRGKEWIPRRTFLHSENSAFESWDTHQPKLRERKDIAETTPESKAPKHYEDMPLLKEPYPAESKGSPYQARANCAQEENRSPSGSQSTSGAWGARDPGSQLFPVEGNASQIDPQVKRSKAPWRKPKTGKGGTDGPPDALEDKKQPNRRGLPLYSKLNPQGQLPENGVLDMPEESNDHYNPPFNISKLLTPIISTKHVLETSDTQPVEISPSPPGQLNGYQEKESSEAQSRDSYKSKAPSLLFNLKDVRKRVKSTYSPLPLLKGFDEKTRGKLDSKQEPLSNGVTLPDGLEENPPTELLPDNVPGVLHSSTQKDPAINSRESFAVSHPTFSSPSASSQTHFCVNGEAAESNSNEKEEANGESELDPSKGGGHPDCRENLPRKHLSLKLFNRESEMGPAMAEMKPHQLENGLSRSVSQETETERETGFQSLPLNQKFSPGPLSPEEEDVFYSDSQSDFTPCRQTKAKFSTSSSDQSFASFEDQQKVCFTEGPQEDRKSHVSAGDKQRDETAVEKEESQQCASRNEHRGVDEQRQEEIQRKAQGVSGGRPRKASAEDLSARGSWMGADKDTAHTHAKDPTPLPASTNKHRLFPIKDNTLRATPVIKPIILPLLRTVSSEDSLSSGHQENELPKQLWGEDAGGLSASESQEMPNTPLSNNDVPGTQHRCMVCEDVQEDPVHTAAQDETSQQTRKGSFSFLPPVEEENRMKPSPDTAGEGLAQEKSKSADLGKLGVPQRIPTIALLPDDLEDSPPSLPQHTYWEEQGFKGHFLSAPRAGPSGRRLVPSEAETSPNPSSLGESSTCSPAASSIWEEASQAAGEHWQRQEPPGPNPWASPGPTGLTRREDMTHGLTWEAEGSDPSDFRALSPRGILLADAAEKPEPPALLEKAAGKPPAVPPKTEKALRRAKKLASKRRKSDQLLEKHTEAWEGKSFTEDTQGTERRPVSPGKGPRPRFPAIRSLPPPTHRHSVSCGWEPTGRRPWGPQSLTPLPPYPATQKVLQDPQSGQYFVFDVPLQVKIKTFYDPETGKYVKVSVPSSEEASSEPPLQDALAAPYLLYPGFRPVPVTSVMPLRCSSQLAAPTFLRQGSGHRPQSSQGSRLQPPPERLGESTQHASGQCPRGPSHSPEKESAEAPRLSIISTDDLEDFATEGVS", "sequence_length": 1412, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4b54babe6df5d6fd0025303df93dfb2ad3550b9470714b51fa96cd1947576f6b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D3Z1D3.json", "taxon_id": "10090", "uniprot_accession": "D3Z1D3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4585-ipr027838.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4585-ipr027838.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4585-pf15232.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4585-pf15232.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:D6RIA3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15232" ], "protein_name": "Uncharacterized protein C4orf54", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "669cb561704a39d850d2a2e3fb32b691801e21ee33fd39b4c8b6ea42ea31454b", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLSFHFWKSRGQPTDAASSVADGIQTPRCCRRCQANNWTGQLSYRTLATVSAGAAAPQPQTTSTASSRSLPTSLRLAAAPPQGLKNWEVVAAVAAVPTALGPVQIRGTLLRATLQPLRGQRRTQDFPSDHHCLFLSLKPGQGLIMEAAPPELNSKARQAEVGDGVSSAQDSQELKQQLWPLPKPSASSQREAKYVDMCASAEVQRESPQTMKLTLGHCPGGQRASRSPKEKAQDEPSSKTPSPQNNPASSQLSRSQHSASEEGGNFSSSSSSSPMNKAEEDGLSKMEDSTTSTGALATSSSSLGFESESGESEGCQAVGGEGEKISGGGGGGKGGGGGGAGDGTECRDIIAKSQGSRDPPKVEEAHYITTHEIQLSEVEQDMDFDVGLASRWDFEDNNVIYSFVDYASFGGSDETPGDITSLTEEDDDNSCYLSTTPSTNTTRTPSPTSSDLARPNAGRSGRDTSSTEVGSGPSDSGPTPPPTGPGTAPLTEPLPETPEAASGAAAAAASSCGSAASQILLSIKPASRAINEPSNVRAKQNIIYAAKHEGDMSLRVSTAAEHNSSSLKQNPAAAVAQDHAKKFIAVPARLQTRCGAIRAKELVDYSSGASSAVSELDDADKEVRNLTSRAFRSLAYPYFEALNISSRESSTTLSEVGFGRWSTFLDLKCGGVGARVEQSLLRSSAASVAAGLRKGSGARATADQLYIQSKKSQTKALEFVVSKVEGEIKHVETPLCFQKQVQTGSRVVTLLEPLNVRSESKASSAPGPGRATKGPGKGPGSAYTDDGSETSEGSKPTSRADGPQKSKFASSLLKNVISKKMQREHEFKMERGEVMDTSHHLSGTSKETEGARGSERQRERGLQRQSSRHSEAGSEYTVVSMSDAGGEGSVAGSKSPVFKASTPRERNAGPGRNFTDGHTEVCEIKKSASETVKGIFLRSQNSAFRSWKEKEAEKREEQAPIGKLKLPKGGDWRADLGEISASKNTIMSRLFVPNIQQTPKDKQPRKQATKYPAAQATSTAVIRPKAPEIKIRLGSVQQPSSDFNIAKLLTPKLAGGSASNLFKTIEDNSRAQQKLFRGDNLEKVPHFQVRDIRDKSKAQGPLHQVRDVRKLIKGSGDSSDKGSVTPEQGLTGPKPRQLSAAAGGSGSLSPMVITCQAVVNQREDSMDREPRESMGKGGGSRVLNSSSPEGTVLVHRASGRLPVATIAPNKPEQGSYLPVLKIVSKASTQKTPEKLKEEEVKEEGKATKPARNALEKLTAAVRSMEELYSFNRNEWKRKSDPLPMMMDSHVLSLIASEEREGVVVADGDHDKLSKRLGEVEERGTGNKAGVVLRGAPIERLQRRNSNPSAESVSARAAAFENLARERPRSLYIPPVHKDVERTQPLQPLPPLPSNRNVFTVSASSIQKTGGVAGKFPQGPSPESPSAAKGIKSQGLRSLKISPATRAPPDEVTNRKSGSNLEKSNSDCENYLTIPLKGSSAAGELLSRPGASREGPPNSSAATLCSLPPLSARSQVPSSSKGSQVSGTSRPAWRTKPDNPRETVAAPPGPQSPEHPPTTIYHQPPLPFTLQGAQPQVLCFSPPSMPAPAPAASAPVPTDPFQQAQPQQTQRKMLLDVTTGQYYLVDTPVQPMTRRLFDPETGQYVDVPMTSQQQAVAPMSISVPPLALSPGAYGPTYMIYPGFLPTVLPTNALQPTPIARAPRGSELSPMVAEPSSKEAAATFTEAPYFMASGQSPASSTSSAPAATSQLLGAKAFAQLHGKPVISITSQPLGPRIIAPPSFDGTTMSFVVEHR", "sequence_length": 1793, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "669cb561704a39d850d2a2e3fb32b691801e21ee33fd39b4c8b6ea42ea31454b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D6RIA3.json", "taxon_id": "9606", "uniprot_accession": "D6RIA3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4585-ipr027838.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4585-ipr027838.yaml" } ], "pfam_ids": [ "PF15232" ], "protein_name": "Uncharacterized protein C4orf54 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSVHFWQTPVRPTDAASSLANGIQTPTHRRCQTSNWTGQLSSRTLATIAARAAAPWLQTTSAASFGSPPTSLWLAEAPPQGLKNWAVVATVAVVPTALGPAQARGNLFQATLWPLRDQRGTQDSPSAHHCLILSLKPGQGLRMEGGTSDMNSQTSLTPAEDPVSRPQDSPEPRQQLRPLPEPSASTLPEAKYVETCASAGLRRESPQTLKLPPEQQASRSPKTKAQDEPSGHAPEAPAPGESPASSQCLPSQACENDFSSSSSSSSSLVDSAEDNGLSKMDDPTKLLGVLATSSSSLGFESDPETSCRQHREEAGDRAGAGEDKRGGVDDGIASCKDIIAKSHSKRGPLRNEDAHYITTHEIQLTEVEQGMDFDVGLASRWDFEDNNVIYSFVDYASFGGSDETPGDITTEEDDDNSCYVSTTPSTNTTRTPSPISSDLARPGAGSSGRDTSSTEVGSGPSDSDTVPPPTGPGTATPPEPLLELREAALGASATAASSCGSAASQILLSIKPTSRAINEPSNVRAKQNIIYAAKHEGDMSLRVSSAAEHNSSSLKQNSAAAVAQDHAKKFIAVPARLQTRCGAIRAKELVDYASGASSAVSELDDADKEVRNLTSRAFRSLAYPYFEALNISSRESSTTLSEVGFGRWSTFLDLKCGGVGARVEQSLLRSSAASVAAGLRKGGGTRATADQLYLQTKKSQTKALEFVVSKVEGEIKHVETPLCFQKQVQTGSRVVTLLEPLNLRSESKASSATGPCRITKGSSKGPGSVYTDDGSETSESSKPASRSDGPQKKSKFASSLLKNVISKKMQREHEFKMERGEVTDTSHRNPPSTKETEGPPGAEKPWERGLQRQSSRHSEASSEYTVVSVSDAGGEGSVVGSKSPIFKASTPRESHTGSGQNVSDGHTEVCEIKKSASETVKGIFLRSQNSAFRTWKEKEAEKLEEKAPVGRLKLRKGGDWRADLGEISASKSTIMSRLFVPNIQQTPKDKQPEKQATKYPAAAAQATSVAVIRPKAPEIKIRLGSVQQPSSDFNIAKLLTPKLASGSSSKLFKTIEDNSRTQQKLFRGGDNLEKVPQFQVRDVRDKSKASGPLHQVRDVRKLIKGSGDSSDKGSVTPEQGLTGPKPRQLTPASGGSRSLSPMVIMCQAVANPREEGVDREPREGVSQVSNGGRLLNSSPEGTVLVHRASGRLPVATIAPNKSEQGSYLPVLKIVSKASAQRTPEKPKEEEAKEEGKAPKPARNALEKLTAAVRSMEELYSFNRNEWKRKSDPLPMMADSHVLSLIASEEKEGVAGPEGGDPDKLAKQLGQVEERDTGHKGGVVLRAAPIERLQRRNSNPSTESVSARAAAFENMARERPRSLYIPPVHKDVERTQPLQPLPPLPGNRNVFTVSSSSTQKTGGVAGKFPQGPSPEGLSTAKGIKAQGLRSLKISPATRAPPEDASNRKTAVSLEKSNSDCENYLTIPLKGSAASAELLGRPGASRDGPPSSSAATLCSLPPLSARSQVPSNPKGSQVSGTSRPAWRTKPDNHRETVVAAPTGPQSPEHTPTAVYHQQALPFTLQGAQPQVLCFSPPGMPAPAPAGPAAVPTDPFQQPQPQQTQRKMLLDVTTGQYYLVDTPVQPMTRRLFDPETGQYVDVPMTSQQQPVAPMSLPVPPLALSPGAYGPTYMIYPGFLPTVLPPNALQPTPMAHTPGGSELSVATEPPSKETAAAFTEAPYFMASSQSPASSSSSAPAATPQLVGAKGFAQLHGKPVISITSQPLGPRIIAPPSFDGTTMSFVVEHR", "sequence_length": 1786, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9a1195b01ce7c9fc7a809b03555364a18d6dc3489a9603612e2e496ba9738a2a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E0CYV9.json", "taxon_id": "10090", "uniprot_accession": "E0CYV9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4585-ipr027838.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4585-ipr027838.yaml" } ], "pfam_ids": [ "PF15232" ], "protein_name": "Proline-rich basic protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLTALAPPALPGIPRQLPTAPARRQDSSGSSGSYYTAPGSPEPPDVGPDAKGPANWPWVAPGRGAGAQPRLSVSAQNSRQRHGPGSGFPRGPGSGPRPPQPQLRTLPSGEMEVIFGVGPLFGCSGADDREAQQQFTEPAFISPLPPGPASPAAVPRQSQVPDGGSRWATYLELRPRGPSPAAPAQFECVEVALEEGAAPARPRTVPKRQIELRPRPQSPPRAAGAPRPRLLLRTGSLDESLGPLQAAAGFVQTALARKLSPEAPAPSSATFGSTGRSEPETRETARSTHVVLEKAKSRPLRVRDNSAPAKAPRPWPSLRERAIRRDKPAPGTEPLGPVSSSIFLQSEEKIQEARKTRFPREAPDRTVQRARSPPFECRIPSEVPSRAVRPRSPSPPRQTPNGAVRGPRCPSPQNLSPWDRTTRRVSSPLFPEASSEWENQNPAVEETVSRRSPSPPILSQWNQCVAGERSPSLEAPSLWEIPHSAVADAVEPRSSPSPPAFFPWEAPDRPIGTWGPSPQETWDPMGPGSSIAFTQEAQNGLTQEELAPPTPSAPGTPEPTEMQSPSTREISDLAFGGSQQSPEVAAPEPPGSHPVGTLDADKCPEVLGPGEAASGRPRMAIPRPRDVRKLVKTTYAPGFPAGAQGSGLPAPPADPCGEEGGESKTQEPPALGPPAPAHYTSVFIKDFLPVVPHPYEPPEPSFDTVARDASQPNGVLRRRAENSTAKPFKRTEIRLPGALALGRRPEVTSRVRARGPGGENRDVEAQRLVPDGDGRTSPLGGARSSSQRSPVGPAGVRSPRPGSPQMQASPSPGIAPKPKTPPTAPEPAAAVQAPLPREPLALAGRTAPAQPRAASAPPTDRSPQSPSQGARRQPGAAPLGKVLVDPESGRYYFVEAPRQPRLRVLFDPESGQYVEVLLPPSSPGPPHRVYTPLALGLGLYPPAYGPIPSLSLPPSPGPQALGSPQLPWVSEAGPLDGTYYLPVSGTPNPAPPLLLCAPPSSSGPTQPGKGSLFPL", "sequence_length": 1015, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "89366a48a9e584a5bec05286a331e37b5aaa417f08d4773776138b81ba596980", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/E7EW31.json", "taxon_id": "9606", "uniprot_accession": "E7EW31", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4585-ipr027838.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4585-ipr027838.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4585-pf15232.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4585-pf15232.yaml" } ], "pfam_ids": [ "PF15232" ], "protein_name": "Cardiac-enriched FHL2-interacting protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMQGNKKCTDAFSDSSSIGSVLDDADREVSSLTDRAFRSLCISEDTSFHDSYLAVSPDITRQVFGTFHQRTVGHTQRKSGIWSQLPSQGTEHSGWAATFQQLPKYVQGEEKYPKTSPPPTPVQRRLEVPVSGLRSSNKPVSKVSTLIKSFDRTESQRCESRPTASKPPALKNPPKFAPLPENSVNFCFDSAFLTVRRVPAEVSNTHQNSYQPGRKHGEQESSKNPEMACHGSSSFLPAANDTATLCESKFPSPHHKPVTGEPGRGKGTFLHSENSAFESWNAHQPKLLERKDTAGTVPESKAPKHYGDTTLLREPCPPERTVSPCQVQASCSQEENRLAAGALSTSIPWGCRDPGAQVFAVEGKAPSSQPDSQEKPAQPPWRKPKTGKKGKESLQDTLEEKTQTNQRGPPLYTKHNPQEQFSENNALDLPVEPNEHYDPPFNISKLLTPIIPSKHALDSADSQPAERTPSPPGQLNGYQEKEPSECQSRDSYKSKAPSLLFNLKDVRKRVKSTYSSSPLLKVLDEKTRGKVDGKQEPVSNGVILPNGLEESPPNELSKERPADDPTASHINPQKDPTADPSEPSADSYLTLSTAPTIAKAPFYVNGEAAERSSYENKEVEGELEMGPAGSSWCPDSREHRPRKHLSLRLCNRDPEPGGATEKMKTHQLENGLSRSVSQETEPEREAGLQNTHLNQKFFPGPLSPEEEDVFYSDSQSDFMPSLKGKAKFSTSSSDQSFASFDDQQKMWFTENQREDRRKDVSAGDSQKDEKENVMRKDELQYCALSNGHACLENRSQGEALQRERESVSGGRTRKASAEEANFRGSWIGENKGTTFSQAKDLTPSPSSASNRHMLFTIKDNTLRATPVIKPIMLPLLRTMSLEDSLSSGHKEEELPRPEWGEDPGFCAPENQDILGTSTPTNTRGTRVKCMANEVMEDPGQGSSMARMEASQPAPKGNFPSMPLVGEGDRVKAPPDAAPGLVASNCKSGSADSGKLAAPWHIPTIALPEGDIEDQPPPWQPENCWEEQTPGFKSHFLSTPRAGPPGRRLVPSERANSPNPGSPGESSACSPAASNIWEESSQAPGGPELLPEEPNQASPWASSSPARVTRREDLTHALVWEGGSDPLLELSAEDLRTLSPRGSLLDVATSPAGTSGRLELPAQLERTASKPPAVPPKTEKALRRAKKLASKRRKTDQAQEKHGESQEGKPCPEDLEQTQQRPLCPRERPRHNFPVVRSLPPPVHRHSVSGFSEPVGRRPGGPQSLTPLPAYPATQKVLQDPQSGEYFVFDLPLQVKIKTFYDPETGKYVKVSIPSSEGASPEPPPPDALAAPYVLYPGFQPVPVTALMPLRCSSQLSAPTFLRQGPRASAARARTQSVHESGLQLDPGPHGDCTPHSAGQRPHGPPQSPGEEGVEAPGLGIISTDDLEDFATEGIS", "sequence_length": 1435, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1e285b0dece9ef78013cb50a8261f5b579f0268c1bac6178ccea52f7dab064d1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q711Q0.json", "taxon_id": "9606", "uniprot_accession": "Q711Q0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15232", "short_name": "DUF4585", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap96-like-pf15239.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap96-like-pf15239.yaml" } ], "pfam_ids": [ "PF15239" ], "protein_name": "Cilia-and flagella-associated protein 96", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPAEGGKTDMERIGLFSEMEYITVGDKYVSQFNRPFNEAASKNKQMLPGGSKEMSDLQAGYFDPHFVRIFEGEGYINLNQVRRRDMVEAAKKNLGKAFLPSNGEKKPCGLGSYYGTIGGPVPFFSAQSKPREKYKAPGKNLYTNPGKKGTGYGYANITIGKQFSHSADFYDAAKLKYKKANEEHHRLLKGAPFKLNLHPRDYFDANPYFSEESLPPIKKEEKKKTISNTFKPSSPGKKPGGMKAGTFDPYPSHSADPYVAKLANISGKDDKIFHPPSGPKSRPVESIMTLNVRRALNSKNYKTSSVPSY", "sequence_length": 309, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1711a86b3a6fe803e84b19afa71a9a5b763eb0933c2313bb866bb84046ca5363", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A7E2U8.json", "taxon_id": "9606", "uniprot_accession": "A7E2U8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap96-like-pf15239.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap96-like-pf15239.yaml" } ], "pfam_ids": [ "PF15239" ], "protein_name": "Cilia-and flagella-associated protein 96", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPAEGGKTDMERIGLFSEMEYITVGDKYVSQFNRPFNESASKNRQILPGGSKEMSNLQAGYFDPHFVRIFEGESYVNPNQVRRRYMMEEAKKNLSKAFLPSNGEKKPCGLGSYYGTIGGPVPFFSAQSKPKEKYEPPGKNLYTNPGKKGTGYGYANITIGKQFSHSSDLYDAAKLNNKKENEEHRRLLKGTAFKLNLYTREYFDTNPYMSEKPLPPIKKVEKKETVGNPFKPSSPGKKAGGMKAGTFDPYPSHSADPYVVKLKSPSSKSAKVFHPPGGPKSRPIESIMALNVKRALNMKNYKTASVQSY", "sequence_length": 309, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cff4429039985bee86ecd56f8b3465bcda2ecd974439c55fa1fc619b387c14a9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2T9M0.json", "taxon_id": "9913", "uniprot_accession": "Q2T9M0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cfap96-like-pf15239.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cfap96-like-pf15239.yaml" } ], "pfam_ids": [ "PF15239" ], "protein_name": "Cilia-and flagella-associated protein 96", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPIEGGKTDMERIGLFSEMEYITVGDKYVSPFNRPFNEAASKNRQILPGGTKEMSSLQAGYFDSQFARIFEGEGYVNLNQVRRRYMLAESKKNLGKAFIPSSGEKKPSGLGSYYGTIGGPVPFFSAQIKPKDKYQPPGKNLYTNPGKKGTGYGYANVTIGKQLSHSSDLYDAARQSYKKESEEHHRLIKGSPFKLHLHPKDYFDTNPYFLEHHLPPLRREEKKEVSFKPFKPSSPGKKAGGMKAGAFDPYPAHSADPYVVKVEKAIPSKGERVFHPPNGPKSRPVESIMALNVKRALNVKNYKNASSTTLGKQLVF", "sequence_length": 316, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea91cc8567356b65869fde64596fc482e1f01194a14ac131b7c942cbf4cdbae8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3U1D9.json", "taxon_id": "10090", "uniprot_accession": "Q3U1D9", "uniprot_release": "2026_03" } ], "pfam_id": "PF15239", "short_name": "CFAP96-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4587-ipr027904.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4587-ipr027904.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4587-pf15248.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15248", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4587-pf15248.yaml" } ], "pfam_ids": [ "PF15248" ], "protein_name": "Proline-rich protein 29", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLGSGNWSGVPTQSTAPMPWVTILQPFPWTVPSSQPQHNRVKEDLLELMMLQNAQMHQLLLGQLVADALNPGPEWPSPPVHTDSHEEQMEEEMEMQEQEPLVYHHHYLPCPVTPLGPMSLWPASFLPVPPHQPPWQGEPRIQHQPPASRQEEVRDVPPPPPPSATGTVGADVPPASDYYDAESLP", "sequence_length": 187, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "64e55a4447f4775325fabf1f3bb2713b81f165496f59c7ea6dbac658f8934f2e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B1ARI9.json", "taxon_id": "10090", "uniprot_accession": "B1ARI9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4587-ipr027904.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4587-ipr027904.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4587-pf15248.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15248", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4587-pf15248.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0C7W0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15248" ], "protein_name": "Proline-rich protein 29", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e5030fefac2eb4f42e8d9175ff054c78a3f79754688ac11febd14d84fb805dee", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MASGAGGSWGRSPPQSAVPTPWVTFLQPLSWAVPPAPPQPGRVKEDLLELMMLQNAQMHQLLLSRLVAGALQPRPASPCPQVYLEVPQEEPEEEEEEMDVREKGPLVFHHHYLPYLMPSPGALLPWPAPFFPTPACQPYLQDVPRIQHCPASREREVRAVPPPPPPSATGTVGADVPPASDYYDAESLL", "sequence_length": 189, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e5030fefac2eb4f42e8d9175ff054c78a3f79754688ac11febd14d84fb805dee", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P0C7W0.json", "taxon_id": "9606", "uniprot_accession": "P0C7W0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4587-ipr027904.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027904", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4587-ipr027904.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4587-pf15248.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15248", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4587-pf15248.yaml" } ], "pfam_ids": [ "PF15248" ], "protein_name": "Uncharacterized protein C21orf58", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARSRLPATSLRKPWKLDRQKLPSPDSGHSLLCGWSPGGKARPAGNTGAWAPAEQFFPASNRTREGGGLWPPLPLQSSPAAPTMLDSSAAEQVTRLTLKLLGQKLEQERQNVEGGPEGLHLEPGNEDRPDDALQTALKRRRDLLQRLREQHLLDELSRAQAWSGPSRGALGSALPPELPPTGILPTASPSPLAPDPPRIILPTVPQPPATIIQQLPQQPLIAQIPPPQAFPTQRSGSIKEDMVELLLLQNAQVHQLVLQNWMLKALPPALQDPPHVPPRVPRAARPRLPAVHHHHHHHHAVWPPGAATVLQPAPSLWTPGPP", "sequence_length": 322, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cff1bdac9d18a636daae41104927ce0323d5d9bed1fee7c39f288223a5e57dc3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P58505.json", "taxon_id": "9606", "uniprot_accession": "P58505", "uniprot_release": "2026_03" } ], "pfam_id": "PF15248", "short_name": "DUF4587", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tapr1-like-pf15251.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tapr1-like-pf15251.yaml" } ], "pfam_ids": [ "PF15251" ], "protein_name": "HUWE1-associated protein modifying stress responses 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEQQKEGEAEVAEHWFSKWERQCLAEAEQEEQLPPELQEEAAAELAGLKSEKQKLWHLFQISATAVAQLYKDSGCQQQGLSMWDPFQNAAMAVTSLYKESGDAHQRSFDLGVQVGHQRRIKDVLEWVKKGRSTIRREDLISFLCGKVPPAPPPPRTPRTPPKPPTGVTSQAVATESSSSVDVDLQPFQEAIALHGLSGAMAGISMRSGDSPQDSGVASSGRRKTSFLEDDLNPFDSEELALHLDSGGIRKRTSAQCSDGITDSPIQKRNRMV", "sequence_length": 273, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f59caf3f1c853477758411b8fa34437b7bff491d90da12bb64b85596b1899cbb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A7P0TBJ1.json", "taxon_id": "9606", "uniprot_accession": "A0A7P0TBJ1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tapr1-like-pf15251.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tapr1-like-pf15251.yaml" } ], "pfam_ids": [ "PF15251" ], "protein_name": "HUWE1-associated protein modifying stress responses 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDQPKDREAEVAGPWFSKWERQCLAEAEQAEQLSPELQEEAAADAAGLKIERQRLWHLFQISATAVAQLYKDSGCQQPGLSMWDPFQNAAMAVTSLYKESGDAYQRSFELGVQVGYQRRVRDVLEWVKKGRSIIRREDLISFLCGKVPPTPQPPRTPRMSPRPPAAASTQAAATESGTPVGVDLQPFHEAIALHGLSGAMASISMRSGPPGSSSQDGGIASSGRWKSSFLENDPNSLSSEELTLLLDSGGVRKRTSAQFGDGSADSPLHKRNRMV", "sequence_length": 276, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ee99672dfacb57055993204aa84a0c76246d5c1ba5d3fe1a5f0500a6234287f1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A804C8T0.json", "taxon_id": "10090", "uniprot_accession": "A0A804C8T0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tapr1-like-pf15251.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tapr1-like-pf15251.yaml" } ], "pfam_ids": [ "PF15251" ], "protein_name": "Uncharacterized protein YJR056C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEQMHSLESSLPPEQPPTKQAIESLNLELSQEFKLAANAVTRLYRVANEKNSLTKHQGYLTCLDDILCALDSNVTADELRAWCYKRRNDILSNSQDKSLNPVKERERKLNKFSENQHRENEAHKEPFEKDSAVKYNFSFNESNGDLSNINENIAPKFRLSMPPLSVEHPPRNASRIKSWKARTINHGRGDTRNLNDITGLGHERERDRENTHYEKKPKLDSDSEVDIRSFRQDMDL", "sequence_length": 236, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c4193c500866483dcdb5350d8546c89f585a457608f6e9526501673d959715ee", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47115.json", "taxon_id": "559292", "uniprot_accession": "P47115", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tapr1-like-pf15251.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tapr1-like-pf15251.yaml" } ], "pfam_ids": [ "PF15251" ], "protein_name": "HUWE1-associated protein modifying stress responses", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEERKEEGEAEIQEHGPEHWFSKWERQCLAEAEQDEQLSPELQEEAAAAAQPEHKQQKLWHLFQNSATAVAQLYKDRVCQQPGLSLWVPFQNAATAVTNLYKESVDTHQRSFDIGIQIGYQRRNKDVLAWVKKRRRTIRREDLISFLCGKVPPPRNSRAPPRLTVVSPNRATSTETSSSVETDLQPFREAIALHGLSGAMASISVRSSTPGSPTHVSSGPNASRRRNGLHDVDLNTFITEEMALHLDNGGTRKRTSAQCGDVITDSPTHKRNRML", "sequence_length": 275, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "209a229afcfcd77c7b139a5594df6504bdd7c820b02707f44635133258f87fd1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q14AM7.json", "taxon_id": "10090", "uniprot_accession": "Q14AM7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tapr1-like-pf15251.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tapr1-like-pf15251.yaml" } ], "pfam_ids": [ "PF15251" ], "protein_name": "HUWE1-associated protein modifying stress responses 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEERKEEGEAEIQEHGPEHWFSKWERQCLAEAEQDEQLPPELQEEAAAAAQPEHKQQKLWHLFQNSATAVAQLYKDRVCQQPGLSLWVPFQNAATAVTNLYKESVDTHQRSFDIGIQIGYQRRNKDVLAWVKKRRRTIRREDLISFLCGKVPPPRNSRAPPRLTVVSPNRATSTETSSSVETDLQPFREAIALHGLSGAMASISVRSSTPGSPTHVSSGSNASRRRNGLHDVDLNTFISEEMALHLDNGGTRKRTSAQCGDVITDSPTHKRNRMI", "sequence_length": 275, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "673d261ba9b4439b60eb785a8d231f517f6a5b11e21bf7f1a77a30bc6d1b2fd8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q14CZ0.json", "taxon_id": "9606", "uniprot_accession": "Q14CZ0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15251", "short_name": "TAPR1-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/postsynaptic-specialization-organization-go0099084.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0099084", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/postsynaptic-specialization-organization-go0099084.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4589-pf15252.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4589-pf15252.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q2T9L4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15252" ], "protein_name": "Inhibitory synaptic factor 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "44516b7e4e0bf3e1c97f6a53bc41bdff933769e1cb96edb986dad7197ef35eb2", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNIRGAPDLGQPSDDPSSGGERERIRQRMKMVIGQLEGILRELKEVAKELREVVSQIDKLTSDFDFELEPDDWTTATVSSTSSSDKAGMGGPFDLGHLDFMTADILSDSWEFCSFLDVSTPSDSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDSSSEEAFGAGPTVKSQLPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEQEVEEEEVGLPPEPAHTEAHAGPHKPSPAPYKSRRSPLTSRHSGSTLAPEQTRRVTRNSSTQTVSDKSTQTVLPYTATRQKARGKN", "sequence_length": 293, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "44516b7e4e0bf3e1c97f6a53bc41bdff933769e1cb96edb986dad7197ef35eb2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2T9L4.json", "taxon_id": "9606", "uniprot_accession": "Q2T9L4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4589-pf15252.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4589-pf15252.yaml" } ], "pfam_ids": [ "PF15252" ], "protein_name": "Protein Largen", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAKSKGNPSSSCPAEGPPAASKTKVKEQIKIIVEDLELVLGDLKDVAKELKEVVDQIDTLTSDLQLEDEMTDSSKTDTLNSSSSGTTASSLEKIKVQANAPLIKPPAHPSAILTVLRKPNPPPPPPRLTPVKCEDPKRVVPTANPVKTNGTLLRNGGLPGGPNKIPNGDICCIPNSNLDKAPVQLLMHRPEKDRCPQAGPRERVRFNEKVQYHGYCPDCDTRYNIKNREVHLHSEPVHPPGKIPHQGPPLPPTPHLPPFPLENGGMGISHSNSFPPIRPATVPPPTAPKPQKTILRKSTTTTV", "sequence_length": 304, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "03d51b230e8f7eacfaa5b87c8e4c355bef107b2ec3f8b0fa27e38c6e4e9aa6c5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q569H4.json", "taxon_id": "9606", "uniprot_accession": "Q569H4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chemical-synaptic-transmission-postsynaptic-go0099565.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0099565", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chemical-synaptic-transmission-postsynaptic-go0099565.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/postsynaptic-specialization-organization-go0099084.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0099084", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/postsynaptic-specialization-organization-go0099084.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4589-pf15252.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4589-pf15252.yaml" } ], "pfam_ids": [ "PF15252" ], "protein_name": "Inhibitory synaptic factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIRGAPDLGQPSDDPNSGGERERIRQRMKMVIGQLEGILRELKEVAKELREVVSQIDKLTSDFDFELEPDDWTTATVSSTSSSDKAGVGGPFDLGHLDFMTADILSDSWEFCSFLDVSTPSDSVDGPEAPRPGTGPDYQLMNGGLPIPNGPRVETPDSSSEEAFSAGPAKGQVPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEEGEEEEEGDLAPELPRVEPHTGPLKPSPAPYKTKRSPLTTRRLGPTLAPEQTRRVTRNSSTQTVSDKSTQTVLPYTATKQKAKGKN", "sequence_length": 292, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "830d64aea4b4db3a134cb608ae962a7880b5076ac2f2f29b89d6c0e24d5dd1ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CD60.json", "taxon_id": "10090", "uniprot_accession": "Q8CD60", "uniprot_release": "2026_03" } ], "pfam_id": "PF15252", "short_name": "DUF4589", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4590-ipr048257.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4590-ipr048257.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4590-pf15257.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4590-pf15257.yaml" } ], "pfam_ids": [ "PF15257" ], "protein_name": "Glutamate rich 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSHSHPAGLLATYNSLTDKHLAGYFNNTRIRRHLLRSGLITRSGRILSEKEYKVNNMKQDHQKYIRECLARAIFHKVLDMERYHQLEIKRKLDTLARKERIQRLKGEHTRRFIEDNMPVLTPHPPAGPKTNRGHSVLAEEGRSSPLTLTAPRPYTAPGNMQPPVRLQPLLSSRQTRNGSKITSGSKPKGSLLESEALFPLGGKKAMMKFRNYMDHSQKEDLYQLPHINSYHTPVPPTPQPQAGKNFRDKRLESWRRKRLRPITAPNGLEPLFAKDPGRIYKTAPHSNAVITMVYFGKNVHLSYDDIDFRDEIKIYQQHCGGENLCVYKGKLLEKDTFQFISKRHHGFPFSLTFFLNGIQVNRISSCCEFKHRRSTRLGGKRGYFGFVCVEKASPCYRCIIAMGLDRKPSSTKPKKEKITEKKEEPPNKSQGKLRKDRMNAPSKRNEMERKESCVSAAFSAEEIKLGVKEVRTAIEEMEWKGKSGRDVWEEDQDNAVKYDYEEDFEVDDEKQDEKVDEDEDQADDQMSGGSKTPTESEKDNRNPEKKIETSSEKAHDSENEDTGCSDSEEDDRQDVKTMSSISSRSHPYSSESEDDSTEVGGEADSVSEEGSSRSSSSQDLRENDDPGKPHFPIEKYLETEIEEQEITEGHNGPWLTELSGMHVTEGKPTMGIQALSESEHKEPRRVASSEVRAKSQLQKEAGLPGVEEEVGQITGGAQEPGHCCSNTAPGLSPTDDGVTPMRKPEVNLGRGTEERAAISANEQPEQDAQEMHTLKEEAMKKDESSQPEDTDAHAGVREESGMQKDGTCHPQDAGIDVELRERVDMQEDGTCHPQGADMDVGLKERVGVQEDGTHYPQDADMDVGLRERVGMQEDGTHHSQDADMDVELKERVGMQEDGTCHPQDANMDVELKERVGMQEDGTCHPQDADMDVELEERTGMQEDGTHHPQGADVDLGLRERAGMQEDGTCYPQNANMDVGLREKAGISEVLLGERSPTGVLLASAEQSTEKGECYLNIASEAEAGTEGSSRHGEEQLIPTGKVAAEGSVFLSVEQARDRQKDEDLDRQALLQTQMEKERAVSEAGQELKAEFTDSGGLNSETLEEAAVLKEVGTSEVKEAEREVGSPKTDGDQGEEEALTELEVVGPVEDTGPERKAGSEETVLGGERAATERKDFLEEAPISASTGEVQASPREVFRGNHELCKEDTAREGVIADTESTAEQDLRAVFPGELAAAGGIEKVERLTPPLRETGSEREEETGPEVLKTEDLLGEQKVKGEEEGTAKEVGSEEEDRASRPEMEAHAKDVEPTGATELGEATKLLEDPPKERAITLSEATPQFGKSPKESEATATEHKGGEELPGQESKALWPQGRGLSHDGEGLLGAPGPEADKAQGPEGFFTARCEEWAAKELDSSAGSERLEEDQPLQAQREDIQRMTQGNLSGERLTRAVVVCGEAKAENPQGEGSEDKECPPGTVTGSLTGQNWNMGGNIVEAEEDPHGGGIEEPTAEQKEEESAESKSADGIPEASSAANAQKETWDGAGEALGEAAAEERTGTEDMAPRTEKVAVVEEVTSAGAMVETEQEQAPEAQDREGGETKASRHTGTAGEDTGSTGKDEEHQSGAAEEFRESVSQRETA", "sequence_length": 1637, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9a198d94a5f0e5e1fcbd871e788883b3b2ffb9e4e43a7f025e5a255a24c91624", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/F6QRE9.json", "taxon_id": "10090", "uniprot_accession": "F6QRE9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4590-ipr048257.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4590-ipr048257.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4590-pf15257.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4590-pf15257.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5RHP9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15257" ], "protein_name": "Glutamate-rich protein 3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "87d545353c2b17a46ede33cdf250c64387bc71e3899d1f0d63e16c5274dd6aeb", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSHSHPAGLLAAYNSLMDKHLAGYFNNTRIRRHLLRSGLITRSGRILSEKEYKLNMMKRDHQKYIRECLAQAIFHKVLDMERYHQLEIKKKLETLARKERIQRFKGEHTRRSVENNMPILSPHPPVGPKSNRGHSVLVDEGHSSPLALTAPRPYTAPGNMQPPIRLQPLPSNPAVETVPKVTSRSRSKTSLLENEALFPIGGKKAVMKFRNSIGNSQRMNSYQLPNINSYMMPIPPPLPPTGKITRENRSETWRRRRFRPTTAPNGLEPLLTKDSRRIHKTSLHSNAAITMIYLGKNVHLSSDNPDFRDEIKVYQQHCGGENLCVYKGKLLEKETFQFISKRHHGFPFSLTFFLNGMQVNRLSSCCEYKHRKGSRLGGKRGYFGFVCVERSSPCYKCIIAMGLDKKPSLPKSRKEKSTEKGEELKKAEGKVRKEREYVIPKRNEIKENKTSVSAKFSAQEIKTGLKEVVTAVEEMTSKGKPGQEVLEDDQENTLKYEYEEDFEVDEEKQGEKSNEEGQADVQMNGIPQSPLDDKKDNLDPEKESETSSQKAPDARDNVKDENDGCSESELEEDKQDMKTASSTSSRSHPYSSDSEDESAVGDREAHTDSSTDESARRSSSQELSENDKPRKSHLPIEESLEIEIEDQEITKADVETKPMPIDESFENVLKEGTEKGTQEIAEGLSEKSGKHVSAEEKEKDKSKLWEESTAQVKDKKAGLPGLEEGGKDSLPLAYVLALGAPTMNFMVDETAAINSNKESQQLVQKTYTLEKKEAMEEDEAPQHRDADIVQGKGEAALWGEAGAVHEAPLRAWKPTAEQPELAEEFTEKREIPPGIERGAEGAAEAEGVRRLGEGGSDPIGQAAAKDAVGLSKDEAPEKQALMLTVLETDKAASEGEQGLEKAVLANEAAALNLEHLHEVAALREAATSEEGEAEGGVAVSDVGESEEEASIDLEDTGPMEDTASKREDGSEEAILGGEEPAKERKEVMRTETRLSPFTGEAEASRMQVSEGSPEEGSLAKEAFLCKEDVEGEEMVTEAEANREDDRKEILPKELDLARERRKAERPKTSLRKTDSEREEVTRANALKDEDAFKEEQKLKAEEGETETEVRAEEETKAPPNEMGSDAENEAPVEASELSDNPGLLGEDSLKETVVPIFEATPGFEKSLENITALRKEGGGERLSEARDTEHKDREELSSRENRALKEGHRQDGEGALAAPEAEPAGKVQAPEGLIPATGQAEELAAKDHDSCAGLEGRAEGQGGVDVVLRTQEAVAEEDPIMAEKFREEAVDEDPEEEEDKECTLETEAMQDRNSEGDGDMEGEGNTQKNEGMGGGRVVAVEVLHGGGETAETAAEEREVLAGSETAEEKTIANKASSFSDVAEEETWHQQDELVGKTAAAGKVVVEELARSGEEVPAAEEMTVTYTTEAGVGTPGALERKTSGLGQEQEEGSEGQEAATGSGDGRQETGAAEKFRLGLSREGERELSPESLQAMATLPVKPDFTETREKQQHMVQGESETADVSPNNVQV", "sequence_length": 1530, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "87d545353c2b17a46ede33cdf250c64387bc71e3899d1f0d63e16c5274dd6aeb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5RHP9.json", "taxon_id": "9606", "uniprot_accession": "Q5RHP9", "uniprot_release": "2026_03" } ], "pfam_id": "PF15257", "short_name": "DUF4590", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/jhy-pf15261.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15261", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/jhy-pf15261.yaml" } ], "pfam_ids": [ "PF15261" ], "protein_name": "Jhy protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKYKPVPKLSSQSPVHHTNLRIPPSGRPFKKEDFLNLISKDSLESDSESLPQEAKSWSDIKDQIQDKDMEPDSLEEDSPSETEEAVNRKAAHNTNREDLSAHDAGVNHSQHQVEDKYSDLRYDPNWKNKREEGQPLAGEALPGSADSSSENLPLAPLYPSREPSMGLSAGKGKEKKSPQSEASLLGSEFLSPKYERSTRQNGFFSELSDSDQEEKSSGLSQYLKSSSSHNDVFLPGSRGPRRRKSKQYFVEKNKLTLGLPMPKTDSYLQLHNKKRGETRLEQISYPVRDTDKMTVQNDKEVENTFMDPEDKWHQRAKQLKNYQEHLSQYEDTKSGNVPRGQSSDAANGQQPSRRTAKARVRKQRKHQKGLKSLGTKELVVSQNNQNNPFQQPQNQRQTADASAKHELAAQTNASNPNLQDARTLTHNPKVTSDSFVSPKQALDRALYKNSISGLNANKRRGHRREEERILYQPQPIYVFSDTHLQDFNELPHRHESPSQRAPQSDHHMNTHRSTKTKKPAKQPQAETKYKNIEMLWKFHSSSDMEPASASPDSRLAQIMEQHQQALMQLAEVQPSEGSLASIILPPILSRVESESQLNSERSHRHQVKMARSNSEGYLLQLERGKRHRKRSSTKSSKLKGYQKRDVKLGGLGPDFASVRDKMQMLMQQKEYAQQVKDYNMKALSILSKPQTSKTESKSAISRKKALDYAKTIPKPKPPNLPDQTAKKTKNSRHSEKEGGLPEISLLEILQSRHEREKQAVAAFKVLHIV", "sequence_length": 770, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8d7c8966f0168a70792b814cbfba46076172bfa1db462c32074debd7d891801b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E9Q793.json", "taxon_id": "10090", "uniprot_accession": "E9Q793", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/jhy-pf15261.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15261", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/jhy-pf15261.yaml" } ], "pfam_ids": [ "PF15261" ], "protein_name": "Jhy protein homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSHSKFIPTVSIQSPVHHTNIKVQSTEPSFKKEDLHLISKDSLESDSESPTQKIKSQSDLEDQIQDNDMEPDSLEEENLSETEEEASRKAAQRAKKENLHTQDAAAINSRQPTEDKYSHIRYDPNWKSKKEEGKLLPVEALPESVDSSTENLTLNPLYPSKEPSMDLSAGKGEQKSPRSTASLLGSEFVSPNYELSTHRTEPFSVLSDSDPEEKSSNLSRYLKSSSSRSEAFLPGSRGPRRRKSKQYFVEKNKLTLGLPTPRMDSYLQLHNKKRGEGHLEQISYPVRVTDKTSIQNARETGNVAIDPEDKWHQRAQQLKDYQEHWSQYEHEKSSSGPRGQSSETTNGQQPSRKPAKHKIRKQRRHRHGPKSLVTEELVVSQGNQNNTPRHQQNPNKPIDTEVTQETVVIMNATNDDLQYSSVLRSQDPTVTSNQYAPLHQISDKVLYKNPARYYPVTNANRERGHNDQEEKRFSYQQLHIDTLSDMHLNYLHELNKKHPSGSQKGSQSVSNINRQASTEKKKQPKLAYTETKYKNLEILWKFHSSSEEQPAKASPDSRLSQIMEQHQQALLQLTEVQPHEGASPGLTLPPILPRVESESQLSSERSQRNQVKISRSNSESYLFQLEKGKKHRKRSSIKSSKLKGYQNRDVKLGGLGPDLESIRDKMQKLIQQKEYAKQVKEYNMKALSIPSKPQTAITENKSAVPRQKALEYAKTIPKPKPSNLSDQASKEKKTPTHAGKEDTLPEISLLEVLQNRHEREKQAVAAFKVLHIV", "sequence_length": 773, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2fbb1b7ea40ba3d1fe510f4310eedc63f622eb822ec5a4a11efd0f1fb5830552", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2T9M9.json", "taxon_id": "9913", "uniprot_accession": "Q2T9M9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/jhy-pf15261.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15261", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/jhy-pf15261.yaml" } ], "pfam_ids": [ "PF15261" ], "protein_name": "Jhy protein homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKRKLIPKLSIQSPVLHTNLNVQSTHPPLKKEDLHRISKDSLESDSESLTQEIMCHSEFDDRIRGNGMEPDSLDEEESPRWGSLHEMEEEASGKAAQMAREQNHHTWDQGANNRQQPIEDKYSDLRYDPNWKSKKEEGQLLSVEALPESTDSSLENLPLAPLYPSQETSMELSGGKGEQKESPQSAASLLGSEFLSPNYEHGARRSKPFSELSDSDLEEKSSSLSPYVKSSSSHNEVFLPGSRGPRRRKSKQHFVEKNKLTLGLPTPKTDSYLQLHNKKRGESHPEQISYPVRVTDKTSIQNAKEMENAAIDPEDKWHQRAQQLKNYQEHWSQYESTKSSNVPRGQPSDMVNDHQPSRRPAKLKIRKQCKHQNGLKSSTTEEVTASQGNQNNPPRQQQNQNKPLDTSTKPESIVIMHASNNDVQASRALRSHNLKETSNTFAPPKQAFDKVLSKNSTGCDSGLNVNKERGHKDQEEKRFSYQQLHTLSDMDLNNLNELSKRHVLLSQKGSQFVYHINTHGSTKNKKQLKQPYTETKYRNLEMLWKFHSSSDSQTVRASPDSWLTQIMEQHQQALVQLTDVQPSEGALSSVTLPPILSRVESESQLSSERSQRNQVKISRSNSEGYLFQLEKGKKHKKRSSSKNTKLKGYQKRDVKLGGLGPDFESIRDKTQKLIQQKEYAKQVKEYNMKTLSILSKPQTEKTQKKSAIPRQKALEYAKTIPKPKPSNLTHQASKEQKNPTYAGKEESLPEISLLEILQNRHEREKQAVAAFKVLHIV", "sequence_length": 778, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2c2e1b04a541cd3378027983e0b636f3d21e70ab2fbf1ea3a32553ee97e6eba5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NUN7.json", "taxon_id": "9606", "uniprot_accession": "Q6NUN7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15261", "short_name": "JHY", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4592-ipr028030.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4592-ipr028030.yaml" } ], "pfam_ids": [ "PF15262" ], "protein_name": "Acrosomal protein KIAA1210", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGFEASGEEGKKKSKFKAFKNFFSKKKKKEPEEIPEVAVLKPRFSSSSVSGSSLQPALEKQVMESKPKSGMGVKSISHDSVFCLDPEPEKGAGKLHSSPAPHRSKSLKIKSQRSQRLSISPLIRSEKVCEELEKFFASDRTTTTFRRRSSQCSSTPRMSSELSLDPETSESSTQQFSGFSTPATSQGCLDSSAAKSKIALNPRKQKKRKSTSTPVKVKQEEQLQSVPAKEKTTTKTKEAEQGEQKVDSTELSSQEQSSKTETQDTAVDKTPSTDPALRLNPRRRRRRAKNEWEILERGLLKSTQRYSLNTKAESSANKEIAGKEHSFLKLLLEKKDIGQPTTTEAEVTTVQKMPSDKGDVERELADIDVEAQKEPAPQPTSTDVAESMISGPSPHCEDKKKKDKVGVLPWIKKSTSQKEVTVLRKEEVQVHVHPSRVCGEGEEASCPELQRVQPQMKVSLESTTYHKEKHPRSGLPVPSTSISSATAEDDVSPKMNLPLPLRRRPNTGETSSDSKSTSEYESSSEMQLSPAHSFKPTRKPKDDAGAGTADDEEDGDDEKEEKDNDDDDEENVFLKSENVDVEVSKMEKQQALRYSSKLLGKPKAREASAKLESSSEDERSCEEMTSAHSSQSLEEFEECSESRGFIRGSISEERPATRCHSQALQELEEKEVSTESSSYIEKYESSEDLSSSEQEQQVPPVSKSSLKQWSAPAKPVHPIQTAQQQPPAMVNISGGPKKSGEPLSPTQTVKSRLRSQSECQVLAEPEGVVAADWDILMQPPPRPRLEQEVSAGPELTVFEKSIAVQPSGYPPQPSVKPSIKKEISLGAESAPLESPPPQHHFQPLLKPFVKQQVSAFERVISMDPKLPTQFQPRMKPQGKQSFSSTPESTAFEGSTSVDHMTLTLSQPMLQPYQEVPLESETVAAKMISTGQLHSKYSAHPLSSHQSQPVPESTSAEGEELLPSQPSVTPKFQPLMTQGSIPSAWAIPIYSPAPRMDSKPLMGSAIALESKPSRYSLQPWQSTPFEQVSVTPDHDPAAAAASWSPPIDPPTSRIPSQPLMRLAVKQPTCTELASVSVSQSSSLERLSSRFPFQPRADPEHYGAEEGVATLRRSRRHHSQSPVRSEFKEEVSSGSRRAFGERSISVGKMPPKYALQPWLCPEFQQQAKEGDVLRKAWLSGHPSQTISKHKVEKTPLPPKCPSPFLTRSKVQEISSRLESVIAQESSKKPQRGRPPSKSFVNFMAQQVFSESAPSKVVLHPKPVARGRRRPSRSLLKPKLDDYAFLYNWDNEPKEDTTLQNLPMKQPFQLSRKPEEPQEVLPFSEGAPVKWNTSARGISQALGKLSVSVSLPNEWKSSEGQLPSTQPSQAFDVAKLQSPVLPVDSANVPVKWRISEGHQPPQSFFVDYQPQVSVDSASAAAKGASCWPMLKDSASTTNVKYSQGYKDFTKSTPTSVIKPATFTSAPAQKPMVSMGTYFKDEVPKCCDETGTSSLLPTSKADVENVFGVRLRSTSQKIGMKNPDPCKPFVLISAAARKEQANKGDLQGSVGGSKQSRPAFSFEKKQGNWPRYEGTLKKSEVFRPPVAFYDQKMLHPRTRERLTRRSLSLPPTLPQREEPEWFSVAKKKAQAWSQIANIMQ", "sequence_length": 1637, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2387a7544c21aaf0fd2e4896a5ba7cea5b8bc0b06e1600c5928525272f91372d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E9Q0C6.json", "taxon_id": "10090", "uniprot_accession": "E9Q0C6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4592-ipr028030.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4592-ipr028030.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4592-pf15262.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15262", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4592-pf15262.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5PR69", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15262" ], "protein_name": "Capping protein-inhibiting regulator of actin dynamics", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d522ac27227a6c6dade7fa05872552c5b200b13d996b32324a88380e43c25030", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGARAFSHDSIFIPDGGAESEQTVQAMSQDNILGKVKTLQRQLGKNIKFGQRPSNAIPMKKAGSTDASSEEDFVLTSPMEIVTQQDIVPSDTENKSSDTPSSSSPLNLPEAGSDMEEKVAPVKPSRPKRHLSSAGTIESVNLDAIPLAIARLDNSAARHKLAVKPKNQRVSRKHRWLAQDRQNEPGSFESQSSLDQNGQLGEDKHIWHGEEPEPLESHEEKRLHEEYWRELEAKCKRQKAEAAEKRRQEEQRRQALERRLWEESLRQELLEEEEEGEEEEEVKEEGEEGEEVGLQPRAGKVPPEEGHQSGPEEQRCTEQELGGADDPARLEAEERRREQEEAERQAEKLRQREAERQEEEQKQREAERQEEEARQCEAERQAEKLRQREAERQEEEARQREAERQAEKLRQREAERQEEELRQREEAERQEKLRQRDAESQEEELRQREAERQRAQEEDAKGMLQEEEEEAKRIEELKGKETPEPLVEEGPQSPEGESQPWLTDDADQRSPLQRDLEKPGEREREDLESAGQREIAEEPRGEGEPAEQSGDLDAHCGGVDGEGKETAQTDSPQPQERQMEGTPAPEENEATAADIDRKVEELRWQEVDERQTMPRPYTFQVSSGSRQILFPKVNLSPVTPAKDASLAPAAQEPPAPRGAASHALPSALSIPHTAILVTGAQLCGPAVNLSQIKDTACKSLLGLSEEKRPMDVPTVESRAGSGKSRPAPESPSNAAALAEWASIRSRILKNSEGDQRGDREPARAGDEPVPRARCDSRGNVRRTPPVNAKFSIMPAWQKFSDSGAETFRQSLDGESGRKKPGLAPSEETAPQPHAAAQQEVSQEPPDTTDGCKFAKDLPSFLVPGLPSPQKAASRTESTTTLDSETTSDVGNPDPAMPGGEEKASPFGIKLRRTNYSLRFHCDQQAEQKKKKRHSSTGDSVGGATPATGSVSGESEPEATFLKHGPSLPQERKPALSPRKDSAESHSSGHYVAVAQSGLPPASGQTPAPEQDRAVSKMPSMQKPALAPKPASQTPPSSPLSKLSRPHLVELLARRAGKLDSEPSETAKESSDNQPPSPSLPEELKGQKRDEKDVPEKKPASPPLPAGQQERPSLIPETGRKEKPVLQSRHSLDGSKVTEKVETAQPLWITLALQKQKGFREQQATREERKQAREAKQAEKLSKETVSVSLQPGSSRASKTAPVHKPAAPSEEKKPETAVSRLQRREQLKKSNTLPTSVTVEISDSAPSAALVKDVTKRFSTPDAAPVSTEPAWLALAKRKAKAWSDCPQIIK", "sequence_length": 1291, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d522ac27227a6c6dade7fa05872552c5b200b13d996b32324a88380e43c25030", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q5PR69.json", "taxon_id": "10090", "uniprot_accession": "Q5PR69", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4592-ipr028030.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4592-ipr028030.yaml" } ], "pfam_ids": [ "PF15262" ], "protein_name": "CRACD-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISTRVMDIKLREAAEGLGEDSTGKKKSKFKTFKKFFGKKKRKESPSSTGSSTWKQSQTRNEVIAIESGPVGYDSEDELEESRGTLGSRALSHDSIFIPESGQDATRPVRVFSQENVCDRIKALQLKIQCNVKMGPPPPPGGLPAKRGEDAGMSSEDDGLPRSPPEMSLLHDVGPGTTIKVSVVSPDHVSDSTVSARISDNSLAPVADFSYPAESSSCLDNSAAKHKLQVKPRNQRSSKMRRLSSRAQSESLSDLTCTPEEEENEEKPLLEVSPEERPSSGQQDVAPDRGPEPGPPAPLPPPGGARARRARLQHSSALTASVEEGGVPGEDPSSRPATPELAEPESAPTLRVEPPSPPEGPPNPGPDGGKQDGEAPPAGPCAPATDKAEEVVCAPEDVASPFPTAIPEGDTTPPETDPAATSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGPAPEPEREAETEPERGAGTEPERIGTEPSTAPAPSPPAPKSCLKHRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAEAPPAGAERAAPERKAERGGAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPLARSGPVWRSEAALDDLQGLPEPQHAKPGPRKLAERGPQDSGDRAASPAGPRKSPQEAAAAPGTREPCPAAQEPAPSEDRNPFPVKLRSTSLSLKYRDGASQEVKGVKRYSAEVRLERSLTVLPKEEKCPLGTAPALRGTRAPSDQGKGKARPPEPLSSKPPLPRKPLLQSFTLPHQPAPPDAGPGEREPRKEPRTAEKRPLRRGAEKSLPPAATGPGADGQPAPPWITVTRQKRRGTLDQPPNQEDKPGARTLKSEPGKQAKVPERGQEPVKQADFVRSKSFLITPVKPAVDRKQGAKLNFKEGLQRGISLSHQNLAQSAVMMEKELHQLKRASYASTDQPSWMELARKKSQAWSDMPQIIK", "sequence_length": 962, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ebbc381ad41103d00bb0f328a84410de7d02a4839a9c49dc6a63f18f09da6674", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NV74.json", "taxon_id": "9606", "uniprot_accession": "Q6NV74", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-barbed-end-actin-filament-capping-go2000813.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000813", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-barbed-end-actin-filament-capping-go2000813.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4592-ipr028030.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4592-ipr028030.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4592-pf15262.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15262", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4592-pf15262.yaml" } ], "pfam_ids": [ "PF15262" ], "protein_name": "Capping protein-inhibiting regulator of actin dynamics", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTRAFSHDSIFIPDGGAESEQTVQAMSQDNILGKVKTLQQQLGKNIKFGQRSPNAIPMNKANSGEASLEEDLFLTSPMEIVTQQDIVLSDAENKSSDTPSSLSPLNLPGAGSEMEEKVAPVKPSRPKRHFSSAGTIESVNLDAIPLAIARLDNSAAKHKLAVKPKKQRVSKKHRRLAQDPQHEQGGLESRPCLDQNGHPGEDKPTWHEEEPNPLDSEEERRRQEDYWRELEAKCKRQKAEAAEKRRLEEQRLQALERRLWEENRRQELLEEEGEGQEPPLEAERAPREEQQRSLEAPGWEDAERREREERERLEAEEERRRLQAQAQAEERRRLEEDARLEERRRQEEEEGRCAEELKRQEEEEAEGWEELEQQEAEVQGPPEALEETGEGRRGAEEEDLGEEEEEGQAHLEDWRGQLSELLNDFEERLEDQERLKPEGQREHSEEPGICEEQNPEAERRREQQGRSGDFQGADRPGPEEKREEGDTEPLLKQEGPVEAAQPPVERKEAAALEQGRKVEELRWQEVDERQTMPRPYTFQVSSGGKQILFPKVNLSPVTPAKDTGLTAAPQEPKAPKASPVQHALPSSLSVPHTAILVTGAQLCGPAVNLSQIKDTACKSLLGLEEKKHAEAPAGENPPRGPGDARAGSGKAKPRQESPSSASALAEWASIRSRILKNAESDPRSSERDQLRPGDESTPRGRCDSRGNQRKTPPVNAKFSIMPAWQKFSDGGTETSKQSTEAESIRKRPMLGPSEETAPQPPPAGVRELGKGPEKSEMHREPADTTEGCKFAKDLPSFLVPSLPYPPQKVVAHTEFTTSSDSETANGIAKPDPVMPGGEEKASPFGIKLRRTNYSLRFNCDQQAEQKKKKRHSSTGDSADAGPPAAGSARGEKEMEGVALKHGPSLPQERKQAPSTRRDSAEPSSSRSVPVAHPGPPPASSQTPAPEHDKAANKMPLAQKPALAPKPTSQTPPASPLSKLSRPYLVELLSRRAGRPDPEPSEPSKEDQESSDRRPPSPPGPEERKGQKRDEEEEATERKPASPPLPATQQEKPSQTPEAGRKEKPMLQSRHSLDGSKLTEKVETAQPLWITLALQKQKGFREQQATREERKQAREAKQAEKLSKENVSVSVQPGSSSVSRAGSLHKSTALPEEKRPETAVSRLERREQLKKANTLPTSVTVEISDSAPPAPLVKEVTKRFSTPDAAPVSTEPAWLALAKRKAKAWSDCPQIIK", "sequence_length": 1233, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "37800bd248745ce561dab551794e22e9621719a505592173a9d51deb00327dc5", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZU35.json", "taxon_id": "9606", "uniprot_accession": "Q6ZU35", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4592-ipr028030.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028030", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4592-ipr028030.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4592-pf15262.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15262", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4592-pf15262.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9ULL0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15262" ], "protein_name": "Acrosomal protein KIAA1210", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f25589dd2c1938401c6b249fb927d5aa681f0df3cfd216675163966cf59fa99e", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRAGWTPRGFSAFHASLLPGRHPYLAHLGPRDRGARIGSRAYSQGCCSCLWLTYKGKKEGSTKGELGPAAVTDLEIPSYSRGFLPCTPRFPTTWCRGPGCFCGTAVIAGNLGDLARIVGPSHHASQLLLLQEQDSGNHPTMAESLSEISDSLDVLEAGDEGKKKCKFKALKSFFVKKKEKEAEDTQEEEMLELSLSSSNINISSLQPVRENQPTKARAKSSMGSKALSHDSIFMLGPEPERSASKMFPSMDPQRGRPQQRSHISRTLPKPRSKVPGVVSGAMSGAVLQNVPTSAVWVAGPKITENPPSRRRRLSIIPPVIQPEIISKNLVEISLDDESPKNPQKKALPHKSLTATQSFSELSSGPDCSQSLTAFATLASTSSTQLPIGFSTPATTQGCLDSSAARHKMTLNPRKQKKNLQVIIRGLPVWFSHFQGILEGSLQCVTQTLETPNLDEPLPVEPKEEEPNLPLVSEEEKSITKPKEINEKKLGMDSADSSSQKQNNKTEMYDKKTTDQAPNTDASRSQGYPMSAAYGRRWRRKGASVSGLSGCEFKGRSLKQSSEGYGLGDRAGSSPTNKTARNVPFSHLSLEKDNMEQPTTSQPETTTPQGLLSDKDDMGRRNAGIDFGSRKASAAQPIPENMDNSMVSDPQPYHEDAASGAEKTEARASLSLMVESLSTTQEEAILSVAAEAQVFMNPSHIQLEDQEAFSFDLQKAQSKMESAQDVQTICKEKPSGNVHQTFTASVLGMTSTTAKGDVYAKTLPPRSLFQSSRKPDAEEVSSDSENIPEEGDGSEELAHGHSSQSLGKFEDEQEVFSESKSFVEDLSSSEEELDLRCLSQALEEPEDAEVFTESSSYVEKYNTSDDCSSSEEDLPLRHPAQALGKPKNQQEVSSASNNTPEEQNDFMQQLPSRCPSQPIMNPTVQQQVPTSSVGTSIKQSDSVEPIPPRHPFQPWVNPKVEQEVSSSPKSMAVEESISMKPLPPKLLCQPLMNPKVQQNMFSGSEDIAVERVISVEPLLPRYSPQSLTDPQIRQISESTAVEEGTYVEPLPPRCLSQPSERPKFLDSMSTSAEWSSPVAPTPSKYTSPPWVTPKFEELYQLSAHPESTTVEEDISKEQLLPRHLSQLTVGNKVQQLSSNFERAAIEADISGSPLPPQYATQFLKRSKVQEMTSRLEKMAVEGTSNKSPIPRRPTQSFVKFMAQQIFSESSALKRGSDVAPLPPNLPSKSLSKPEVKHQVFSDSGSANPKGGISSKMLPMKHPLQSLGRPEDPQKVFSYSERAPGKCSSFKEQLSPRQLSQALRKPEYEQKVSPVSASSPKEWRNSKKQLPPKHSSQASDRSKFQPQMSSKGPVNVPVKQSSGEKHLPSSSPFQQQVHSSSVNAAARRSVFESNSDNWFLGRDEAFAIKTKKFSQGSKNPIKSIPAPATKPGKFTIAPVRQTSTSGGIYSKKEDLESGDGNNNQHANLSNQDDVEKLFGVRLKRAPPSQKYKSEKQDNFTQLASVPSGPISSSVGRGHKIRSTSQGLLDAAGNLTKISYVADKQQSRPKSESMAKKQPACKTPGKPAGQQSDYAVSEPVWITMAKQKQKSFKAHISVKELKTKSNAGADAETKEPKYEGAGSANENQPKKMFTSSVHKQEKTAQMKPPKPTKSVGFEAQKILQVPAMEKETKRSSTLPAKFQNPVEPIEPVWFSLARKKAKAWSHMAEITQ", "sequence_length": 1709, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f25589dd2c1938401c6b249fb927d5aa681f0df3cfd216675163966cf59fa99e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ULL0.json", "taxon_id": "9606", "uniprot_accession": "Q9ULL0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15262", "short_name": "DUF4592", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4594-pf15266.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4594-pf15266.yaml" } ], "pfam_ids": [ "PF15266" ], "protein_name": "Coiled-coil domain-containing protein 9B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISCAEQRSRSRQGEADRAGSGGSSFPPALAPGSCFEILSAPGISMHLAGPHKAESTMRRHEEKDAELDRRIVALRKKNQALLRRYQEIEEDRRQAEQGGMAVTTPGLLQPDSLTVTISQVPGEKRVVSRNWARAPLSPGVTTTLTDDEDAADAPGTFSMGHRVELAVTMENKAKAKRIVSEKPTTQARSPRAKGTSGGGRSWRAPLQMTSSSDSAGKGVLEPRSPGVVSSPPPQQSLGLSPEASWDYTQWKQEREQIDLARLARHRNPQGDWSRPWDLDKAKSMPQNCHKPRDRDLAMGSRKGPRTHQKPQHPPSSLDGKCRGGQSGRPSMTSTIGSNAQGKERLTGRARRYDMKEDEMLQSQEGSQSSTKTPSAEEEFVQKRNEREPDRQETVPATSPIPASPEGLKGESGTSTASLAPDSPQHSDLAPLDLSVGGASSRKPGKSTCILGPKAGAQQSPVSWPNGSEQQTLGCTDHQPGLEVHSCTESQRKAQTPEPMEDRAGKAGAQENLTPRSRPPRGIGPRARGTSKRSRAGGPGPAGRC", "sequence_length": 545, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fddc79f68938969c7a0960e8e81fa1cd4f2ac064fc55296c09cd8453831f32f5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A3KGF9.json", "taxon_id": "10090", "uniprot_accession": "A3KGF9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4594-pf15266.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4594-pf15266.yaml" } ], "pfam_ids": [ "PF15266" ], "protein_name": "Coiled-coil domain-containing protein 9B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISCAEQRSRQGEAGRGPAPVAPAFLPLWLPRGCSGILSVPAVAMHSAGTPRAESPMSRQEKDAELDRRIVALRKKNQALLRRYQEIQEDRRQAEQGGMAVTTPALLQPDGLTVTISQVPGEKRVVSRNWARGTCGPRVTNEMLEDEDAEDHGGTFCLGELVELAVTMENKAEGKRIVSEKPTRARNQGIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSRPVGEPPEAGWDYAQWKQEREQIDLARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAGRC", "sequence_length": 534, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6887300b9901732639cf2f2c76cb1875dc23705c67039ac004dd25b31124b72c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZUT6.json", "taxon_id": "9606", "uniprot_accession": "Q6ZUT6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4594-pf15266.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4594-pf15266.yaml" } ], "pfam_ids": [ "PF15266" ], "protein_name": "Coiled-coil domain-containing protein 9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAATLDLKSKEEKDAELDKRIEALRRKNEALIRRYQEIEEDRKKAELEGVAVTAPRKGRSVEKENVAVESEKNLGPSRRSPGTPRPPGASKGGRTPPQQGGRAGMGRASRSWEGSPGEQPRGGGAGGRGRRGRGRGSPHLSGAGDTSISDRKSKEWEERRRQNIEKMNEEMEKIAEYERNQREGVLEPNPVRNFLDDPRRRSGPLEESERDRREESRRHGRNWGGPDFERVRCGLEHERQGRRAGLGSAGDMTLSMTGRERSEYLRWKQEREKIDQERLQRHRKPTGQWRREWDAEKTDGMFKDGPVPAHEPSHRYDDQAWARPPKPPTFGEFLSQHKAEASSRRRRKSSRPQAKAAPRAYSDHDDRWETKEGAASPAPETPQPTSPETSPKETPMQPPEIPAPAHRPPEDEGEENEGEEDEEWEDISEDEEEEEIEVEEGDEEEPAQDHQAPEAAPTGIPCSEQAHGVPFSPEEPLLEPQAPGTPSSPFSPPSGHQPVSDWGEEVELNSPRTTHLAGALSPGEAWPFESV", "sequence_length": 531, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e4eba74967e7a9f5d65571e3ab05d9b44a3b2f0be930cbc7e36619e5f94576de", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y3X0.json", "taxon_id": "9606", "uniprot_accession": "Q9Y3X0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15266", "short_name": "DUF4594", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15283", "short_name": "DUF4595", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/back-btbd8-pf26017.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26017", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/back-btbd8-pf26017.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/btbd8-c-pf15363.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15363", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/btbd8-c-pf15363.yaml" } ], "pfam_ids": [ "PF00651", "PF15363", "PF26017" ], "protein_name": "BTB/POZ domain-containing protein 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAHCGAGGAAPVALLSSPGHGRKGLPRKGPGERRRLKAAVSEQLSRDVLRLLREEIHTDTILSVSGSLFKVHKAVLLARAPGFHSHIIEHTSSDLTNELVPVDGVEASEFKAFLQIVYSSNKNIKNYEEEIVKKLKVGSLMPEKGPDVSFPRYRTSSDCFLGKGEIPEDITGGGDCFISKADSDLEPASELGGDLLKLYLSQHYPDIDICVDGRSFRAHRAILSARSSYFAAMLSGCWAESSQECITLQGITHVEMNVMMHFIYGGTLDFPEKANVGQILNVADMYGLEGLREVAIYVLRRDYCNFFQKPVPRTWASILECLIIAHSVGVESLFADCMNCIISHFARFWSERSFANVPPEIQKTCLSMQIQSLNHGNAAFLLMESDRLIMGLPRVKWTEAALSMASQLQEECVTFIVENFSQIIESENFTLLLQSQAMSSTAHLLDKIFKAIEDNITAENSCSLLMALDTLLNSESTKEMGFTCRIQAVRGKLWAFLVQSFYAVRHTGSWKLMHLDDQQKIQVAALDKGDDRRLGRKPVLTSSQQRRQGSDVDVLKIKPWTENNKKPCQTSLSTNQKMRSDGLGASGHASSTNRNSINKVSKHGDSTKMSKVVKEMKTGGKYVSGKSKTMVKPQTENSDHTKIEGLSSTVVGRPSRVTAAGRKDPVHGKGVQNQEVETTGARPKVLTANLNVQARAKPLQTLRGKDSTCPASVGPSSRSTHSSTELLASMGSVDETKENGSVEDKCRDGKPYVSDSPGQMVSNGVMSTAAVKSRAVARITNGTASNKSFTHEQDSHGNSSVIKRGDGKGLSASAPQTAAKKRGSSNGCTAAQPRTKSAPPTLAQAQGSQGESPHSVKSSVSSRQSDENVTRLRHGTDKQIPKRKVVKQGHTTLQKVNAKLVPMPKIPSQPKKGGTVNSKDSKQKVLPGQIMLQSHASQRPSKPEVAEKSVLHGVSDSRNHVSKQRPHESPCTLACDTSGPEVSQIPCRPQPQSPLGSQEKKRLELACQDRSTLGDSVKRELRSELAGIEQSHTSAYKDSSQCNGNPNCGSIAALKSVISNPNENLINSNPVHNSDSANTEQAYLSDRERETGRENTDTEPSMSCINGKAFLCVPEGTSSTLNPTQSDRRLTFHGAAQSQLPDDCATEDSKCATVTSAVSSKCLLGQPSEKNCKNMEMSETPESHGTPEAPFVGPWDLNTGATHQRESPESDTGSATTSSDDIKPRSEDYDAGGSQDDEGSHDRGISKCSTALCHDFLGRSSSDTSTPEELKVHEGDLRTEVRVRKQGGGDHQIHSASDDEIPRKKPEPWSRSTIGYPREKGSTPRGSIPSAQEGDQVSSSADETEDERSEAENVGENSSPCSSGTQQVQGIINLAFDDGAEHESREFSATKKFRRSVLLSVDECEEVGSDEGEGHTPFQPSLDSLSPSDVFDGVSYEHHGRTGYSRFFKENEATTAEHNHNKGNGGYKNESFLLNSRSKDFEKQDKQCVSTDQKTRLDVPPKGSQQLFPENEEVISKREAAHSFQQHSTFMDGDTKSQERPCHLELHQRELSSNIPKISSVKSLDSCPSQGLPQEGQVKESRPTPPKGANNAVFSGDIDDCDTMAQTSMYDHRPSKTLSPIYEMSLTAACEQEVESETHVADRGSEDEQHFAKQDWTLLRQLLSEQDANLNITSSLPEDLSLAQYLINQTLLLARDSSKPQGSAHADTWNRWSELSSPLDDSATSATTASVSSTDCSPQGEWTILELETQH", "sequence_length": 1751, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8678a5e66ff87e5755fb7d11d7893260fbed28a2abf461b2310b637dba74e92d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/D3YUB6.json", "taxon_id": "10090", "uniprot_accession": "D3YUB6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/back-btbd8-pf26017.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26017", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/back-btbd8-pf26017.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/btbd8-c-pf15363.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15363", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/btbd8-c-pf15363.yaml" } ], "pfam_ids": [ "PF00651", "PF15363", "PF26017" ], "protein_name": "BTB/POZ domain-containing protein 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAHCGAGGAAPAGLPRSPGLGRKGLPRKGSGERRRLKAVVSEQLSRDVLRLLREEMHTDMVLSVSGSLFKVHRAVLLARAPGFHSHITGHTSRGLTDELIPVDSVEASEFKAFLQIVYSSNKSVKNYEEEILQKMQVGNVMPEKGLDVSFLQCRTSSDCFLGKHEIPADVTSGGDSFISKDDCDLEPVSELGADLLKLYLSQDYHDIDICVDGKSFKAHRAILSARSSYFAAMLSGCWAESSQECITLQGITHVEMSVMMHFIYGGTLDFPEKANVGQILNVADMYGLEGLREVAIYVLRRDYCNFFQKPVPRTWASILECLVIAHSVGVESLFADCMNCIISHFARFWSERSFANVPPEIQKTCLSMQIQSLNHGNAALLLMESDKLITGLPRVKWTEAALSMASQLQGECVTFIVQNFSQVMESASFTLLLQSQAMSSTAHLLDKIFKAIEDSITAENSCSLLMALDTLLKSDSAEEMGFTCRIQAVRDKLWTFLVQSFYAVRHTESWKLMHIDDQQKIQAAALDKGDDRRLGRKPVLSSSQQRRQGSDVIKIKPWTGNNKKLCRASPSTNEKMRSDGLGASGHASGTHRNSVNKVSKHGEGTKVSKVTTEVKTGATHVPGKPKTTIKPQTENNAHTKLESISSTVVGRPARMAATGRKDLAHGKGIQNQEGETTGARPKVLTANLNTQARAKPLQTVKGKDNGCSATVGPSSRSANSSMERLASTGSVDETKENGSVEDKSCDKKPYVSASPGQMVYNGVTSTVAVKSRPVSRVTSGTSSKKSFIHEQGPSVTSSVIKKGRGSSKGLNDSAPQTAAKRGGSSNGYAAAQPRTKSAPPTLAQTQGSQGESPHSVKSSISSRQSDESVTRLRHGTDKQMPKRKVVKQGHATLQKVNAKPTPKNPSQSTKGGTMTSKDSKQKVLPGQVTLQSQASQRPSNPEAATTQRSVLHGVNDNRSQVFKQRPPESLVNLASDTNGPEASPSPCRPQPQSPLGNQEKTRQEREHQDGSTLGDSVKHELRSELTSIEQSHTPAYKVSSQCSANPNCGCIASLKPVTSNPSENWINSNTANTDQVCVSDRERQTGRKGTDREPSVNCVARKAALPSVPAGMSGTLKSAQDDRKLPFHREELSAQGHLPHDCATEDSKCATPTSAVSSRCLLGQPSEKGYKNMEASGTSESHEAPEAPFMGPWDLNTSATHQRESPESDTGSATTSSDDIKPRSEDYDAGGSQDDEGSHDRGVSKCSTALCHDFLGRSSSDTSTPEELKVHEGDLRTEVRVRKPGGGDLPLHSASDDETPRKKPDPWSRSTIVHPREKGSAPRGSVPSAQEVDQVSSSADETEDERSEAENVREHSSPSNSGTQHVQGIINLAFEDGTEHESREFSATKKFRRSVLLSVDECEEVGSDEGEGHTPLQPSLDSLSPSDVFDGVSYEHHGRTGYSRFFKENEATTAEHKYSRGNDGHKNEGFLLSPRSRDFPRQGKQCVSTGEKTRLDVPPKASQQPFPESKDMTSKREVAHGLQQHGTLTDGDTRSQERPCHLELHQREPSSTIPKISSARSLDSCPSQVLPQDGQVTATHPTPPKRANNAVFSGDIDDCDTMAQTTMYDHRPSKTLSPIHEMSLTAACEQKEESGTHVADRASEDEQPFAKQDWTLLKQLLSEQDANLNVTSSLPEDLSLAQYLINQTLLLARDSSKPQGSAHADTWNRWSELSSPLDDLTASATTVSVSSTDCSPQGEWTILELETQH", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "42b1acefc418e70e9188d5e94ddb77d9ca36ac137ad89c97328c7a0441a46d8e", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEVHGKPKASPSCSSPTRDSSGVPVSKELLTAGSDGRGGIWDRLLINSQPKSRKTSTLQTVRIERSPLLDQVQTFLPQMARANEKLRKEMAAAPPGRFNIENIDGPHSKVIQMDVALFEMNQSDSKEVDSSEESSQDSSENSSESEDEDDSIPSEVTIDNIKLPNSEGGKGKIEVLDSPASKKKK", "sequence_length": 185, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "42b1acefc418e70e9188d5e94ddb77d9ca36ac137ad89c97328c7a0441a46d8e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N5I9.json", "taxon_id": "9606", "uniprot_accession": "Q8N5I9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/box-c-d-methylation-guide-snornp-complex-binding-go0062064.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0062064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/box-c-d-methylation-guide-snornp-complex-binding-go0062064.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/nopchap1-pf15370.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15370", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/nopchap1-pf15370.yaml" } ], "pfam_ids": [ "PF15370" ], "protein_name": "NOP protein chaperone 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEFQGERGTGPGVSSSSVACSQVTVSRELLTAGSEGSGGIWDQLLISSKPHPRKTSTLQTVRMQRSPLLDQVQAFLPQMAQANEKLRREMAAAPAGHFNIENIDETSGNIIQMDVALFEMSRSDSKEEDSPEESSRDSSGDSSESEEDVCVPSEVTIENIKLPNAEGGKGKIEILDSPASKKKKQ", "sequence_length": 185, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "db4121a10da846120ce849196a338d274d1854fa5751623968e9455b2a8b5322", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CX66.json", "taxon_id": "10090", "uniprot_accession": "Q9CX66", "uniprot_release": "2026_03" } ], "pfam_id": "PF15370", "short_name": "NOPCHAP1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 9, "discovery_scanned": true, "example_count": 9, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spata31-like-ipr027970.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027970", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spata31-like-ipr027970.yaml" } ], "pfam_ids": [ "PF15371" ], "protein_name": "Protein SPATA31F3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSPTFVLWDVGYPLYTYGSICIIALIIWQVKKSCQKLSLVPNRSCCRCHRRVQQKSGDRTSRARRTSQEEAEKLWKLLFLMKSQGWLPQEGSVRRILCADPCCQICNVMALEIKQLLAGENNQISLTSLGPSQGSSCLEALSTSSVSFKHSQDLGSPKSKELSLASVTPTLSQLMDQKSLTQSAARSAGADSVQDSWADHFQRGQRSQVPAVSQVMGSLSSNFEKPGIPLSQQERTKNNSKFVLENQEAPEVGLDNKMKLFLHWINPEMKDRRHEESILLSKAETVTQDRTKNIEKSPTVTKDHVWGATTQKTTEDPEAQPPSTEEEGLIFCDAPSA", "sequence_length": 338, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "be11f4d9368c38c17187fd41b3d9745d4eb30d361ad512f0c8357b1dad2c09cd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A6NFA0.json", "taxon_id": "9606", "uniprot_accession": "A6NFA0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spata31-ipr039509.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039509", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spata31-ipr039509.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spata31-like-ipr027970.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027970", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spata31-like-ipr027970.yaml" } ], "pfam_ids": [ "PF14650", "PF15371" ], "protein_name": "Spermatogenesis-associated protein 31C2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENLPFPLKLLSASSLNTPSSTPWVLDIFLTLVFALGFFFLLLPYFSYLRCDNPPSPSPKKRKRHLVSQRPAGRRGRPRGRMKNHSLRACRECPRGLEETWDLLSQLQSLLGPHLEKGDFGQLSGPDPPGEVGKRTPDGASRSSHEPTEDAAPIVSPLASPDPRTKHPQDLASTPPPGPMTTSVSSLSASQPPEPSLLLEHPSPEPPALFPHPPRTPDPLACSPPPPKGFTPPPLRDSTLLTPSHCDSVALPLDTVPQSLSPREDLAASVPGISGLGGSNSQVSALSWSQETTKTWCVFNSSVQQDHLSRQRDTTMSPLLFQAQPLSHLEPESQPFISSTPQFWPTPMAQAEAQAHLQSSFPVLSPAFLSPMKNTGVACPASQNKVQALSLPETQHPERPLLKKQLEGGLALPSRVQKSQDVFSVSTPNLPQERLTSILPENFPVSPELWRQLEQHMGQRGRIQESLDLMQLQDELPGTSQAKGKPRPWQSSTSTGESSKEAQTVKFQLERDPCPHLGQILGETPQNLSRGMESFPGKVLGATSEESERNLRKPLRSDSGSDLLRRTERNHIENILKAHMSRKLGQTNEGLIPVSVRRSWLAVNQAFPVSNTHVKTSNLAAPKSRKACVNTAQVLSFLEPCTQQVLGAHIVRFWAKHRWGLPLRVLKPIQCFQLEKVSSLSLIQLAGPSSDTCESGAGSKVEVATFLGEPPMASLRKQVLTKPSVHMPERLQASSPACKQFQRAPRGIPSSNDHGSLKAPTAGQEGRWPSKPLTYSLTGSTQQSRSLGAQSSRAGETREAVPQPTVPLGTCMRANLQATSEDVRGFKAPGASKSSLLPRMSVSQDPRKLCLMEEAVSEFEPGKATKSETQPQVSATVVLLPDGQASVVPHASENLASQVPQGHLQSMPTGNMQASQELCDLMSARRSNMGHKEPRNPNCQGSCKSQSPMFPPTHKRENSRKPNLEKHEEMFQGLRTPQLTPGRKTEDTRQNEGVQLLPSKKQPPSISHFGENIKQFFQTIFSKKERKPAPVTAESQKTVKNRSCVYGSSAEAERLMTAVGQILEENMSLCHARHASKVNQQRQQFQAPVCGFPCNHRHPFYSEHSRMLSYAASSQQATLKNQSRPNRDRQIRDQ", "sequence_length": 1134, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "652fc563e9e8e5e53117351192493e3283a7c1fd8a635f55564abedd69870ed8", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/B4DYI2.json", "taxon_id": "9606", "uniprot_accession": "B4DYI2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spata31-ipr039509.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039509", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spata31-ipr039509.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spata31-like-ipr027970.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027970", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spata31-like-ipr027970.yaml" } ], "pfam_ids": [ "PF14650", "PF15371" ], "protein_name": "Spermatogenesis-associated protein 31D3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENILCFLNSYTETGLSPDSHCLDIDLNFICLSGLGLFILYLFYMVLTLYSSPTEKNNDTQKHQGRARRKRKSVTFKDRKSLQKEAEEERKLHSFLKSFGPPVSCSPLGQHHDTTLFRRLLCPDPVCRVCNRATADIQRLLSWESLKDAAPSVSPLASSASGAESSFTLASTPSATTPEDLILSSRPKPSPPPPLILSPDLITTLADLFSPSPLRDPLPPQPVSPLDSKFPIDHSPPQQLPFPLLPPHHIERVEPSLQPEASLSLNTIFSFGSTLCQDISQAVNRTDSCARHHGPPTPSALPPEDCTVTQSKSNLTVLKTFPEMLSLGGSGGSSTSAPTTKGIDHSCPASSEFSWWQPHAKDSFSSNFVPSDFMEELLTLHSSEASLGGHSVANIIQPVNISFLSHDIPALLERQVKRRGDFLMWKENGKKPGSFPTQLRPNYQLNSSRNMLTSTAVKHDLAESFPFWASKGKLEWQHIHQQPPYSKCFEDHLEQKYVQLFWGLPSLHSESLHPTVFVQHGRSSMFVFFNGITNTSMSHESPVLPPPQPLFLPSTQPLPLPQTLPRGQSLHLTQVKSLAQPQSPFPALPPSPLFLIRVCGVCFHRPQNEARSLMPSEINHLEWNVLQKVQESVWGLPSVVQKSQEDFCPPAPNPVLVRKSFKVHVPISIIPGDFPLSSEVRKKLEQHIRKRLIQRRWGLPRRIHESLSLLRPQNKISELSVSESIHGPLNISLVEGQRCNVLKKSASSFPRSFHERSSNMLSMENVGNYQGCSQETAPKNHLLHDPETSSEEDLRSNSERDLGTHMMHLSGNDSGVRLGQKQLENALTVHLSKKFEEINEGRMPGTVHSSWHSVKQTICLPEKSHSQIKHRNLAALVSEDHRVDTSQEMSFLSSNKQKMLEAHIKSFHMKPILNLSI", "sequence_length": 917, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "52114ba9186c5c8105e09db85e4513b91dc8e56e165e0215c1fd7804aa1378a8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C874.json", "taxon_id": "9606", "uniprot_accession": "P0C874", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spata31-ipr039509.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039509", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spata31-ipr039509.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spata31-like-ipr027970.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027970", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spata31-like-ipr027970.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4599-pf15371.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15371", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4599-pf15371.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fam75-pf14650.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14650", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fam75-pf14650.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0DKV0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF14650", "PF15371" ], "protein_name": "Spermatogenesis-associated protein 31C1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e5a5c93da1a2840206c30cae142a9f378d78c4c1c6bc1e7085393d0fbf8df386", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MENLPFPLKLLSASSLNTPSSTPWVLDIFLTLVFALGLFFLLLPYFSYLRCDNPPSPSPRKRKRHLVSQRHLVSQCPTGRRGRPRGRMKNHSLRACRECPRGLEETWDLLSQLQSLLGPHLEKGDFGQLSGPDPPGEVGKRTPDGASRSSHEPMEDAAPIVSPLASPDPRTKHPQDLASTPPPGPMTTSVSSLSASQPPEPSLLLERPSPEPPALFPHPPHTPDPLACSPPPPKGFTPPPLRDSTLLTPSHCDSVALPLDTVPQSLSPREDLAASVPAISGLGGSNSQVSALSWSQETTKTWCIFNSSVQQDHLSRQRDTTMSPLLFQAQPLSHLGPESQPFISSTPQFRPTPMAQAEAQAHLQSSFPVLSPAFLSPMKNTGVACPASQNKVQALSLPETQHPERPLLRKQLEGGLALPSRVQKSQDVFSVSTPNLPQERLTSILPENFPVSPELWRQLEQYMGQRGRIQESLDLMQLQDELPGTSQAKGKPRPWQSSTSTGESSKEAQTVKFQLERDPCPHLGQILGETPQNLSRGMESFPGKVLGATSEESERNLRKPLRSDSGSDLLRRTERNHIENILKAHMGRKLGQTNEGLIPVSVRRSWLAVNQAFPVSNTHVKTSNLAAPKSRKACVNTAQVLSFLELCTQQVLEAHIVRFWAKHRWGLPLRVLKPIQCFQLEKVSSLSLIQLAGPSSDTCESGAGSKVEVATLLGEPPMASLRKQVLTKPSVHMPERLQASSPACKQFQRAPRGIPSSNDHGSLKAPTAGQEGRWPSKPLTYSLKGSTQQSRSLGAQSSRAGETREAVPQPTVPLGTCMRANLQATSEDVRGFKAPGASKSSLLPRMSVSQDPRKLCLMEEAVSEFEPGMATKSETQPQVSAAVVLLPDGQASVVPHASENLASQVPQGHLQSTPTGNMQASQELCDLMSARRSNMGHKEPRNPNCQGSCKSQSPMFPPTHKRENSRKPNLEKHEEMFQGLRTPQLTPGRKTEDTRQNEGVQLLPSKKQPPSISHFGENIKQFFETIFSKKERKPAPVTAESQKTVKNRSCVYGSSAEAERLMTAVGQIPEENMSLCHARHASKVNQQRQQFQAPVCGFPCNHRHPFYSDHSRMLSYAASSQQATLKNQSRPNRDRQIRDQQPLKSVRCNNEQWGLRHPQLLLPKKAVSPVSPPQHRPKTPSASSHHHH", "sequence_length": 1188, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e5a5c93da1a2840206c30cae142a9f378d78c4c1c6bc1e7085393d0fbf8df386", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DKV0.json", "taxon_id": "9606", "uniprot_accession": "P0DKV0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spata31-ipr039509.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039509", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spata31-ipr039509.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spata31-like-ipr027970.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027970", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spata31-like-ipr027970.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4599-pf15371.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15371", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4599-pf15371.yaml" } ], "pfam_ids": [ "PF14650", "PF15371" ], "protein_name": "Spermatogenesis-associated protein 31A1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENLPFPLKLLSASSLNAPSSTPWVLDIFLTLVFALGFFFLLLPYLSYFRCDDPPSPSPGKRKCPVGRRRRPRGRMKNHSLRAGRECPRGLQETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPPHTPDPLACSPPPPKGFTAPPLRDSTLITPSHCDSVALPLGTVPQSLSPHEDLVASVPAISGLGGSNSHVSASSRWQETARTSCAFNSSVQQDHLSRHPPETYQMEAGSLFLLSSDGQNAVGIQVTETAKVNIWEEKENVGSFTDRMTPEKHLNSLRNLAKSLDAEQDTTNPKPFWNMGENSKQLPGPQKLSDPRLWQESFWKNYSQLFWGLPSLHSESLVANAWVTDRSYTLQSPPFLFNEMSNVCPIQRETTMSPLLFQAQPPSHLGPECQPFISSTPQFRPTPMAQAEAQAHLQSSFPVLSPAFPSLIKNTGVACPASQNKVQALSLPETQHPEWPLLRRQLEGRLALPSRVQKSQDVFSVSTPNLPQESLTSILPENFPVSPELRRQLEQHIKKWIIQHWGNLGRIQESLDLMQLRDESPGTSQAKGKPSPWQSSMSTGESSKEAQKVKFQLERDPCPHLGQILGETPQNLSRDMKSFPRKVLGVTSEESERNLRKPLRSDSGSDLLRCTERTHIENILKAHMGRNLGQTNEGLIPVRVRRSWLAVNQALPVSNTHVKTSNLAAPKSGKACVNTAQVLSFLEPCTQQGLGAHIVRFWAKHRWGLPLRVLKPIQCFKLEKVSSLSLTQLAGPSSATCESGAGSEVEVDMFLRKPPMASLRKQVLTKASDHMPESLLASSPAWKQFQRAPRGIPSWNDHGPLKPPPAGQEGRWPSKPLTYSLTGSTQQSRSLGAQSSKAGETREAVPQCRVPLETCMLANLQATSEDMHGFEAPGTSKSSLHPRVSVSQDPRKLCLMEEVVNEFEPGMATKSETQPQVCAAVVLLPDGQASVVPHASENLVSQVPQGHLQSMPAGNMRASQELHDLMAARRSKLVHEEPRNPNCQGSCKNQRPMFPPIHKSEKSRKPNLEKHEERLEGLRTPQLTPVRKTEDTHQDEGVQLLPSKKQPPSVSHFGGNIKQFFQWIFSKKKSKPAPVTAESQKTVKNRSCVYSSSAEAQGLMTAVGQMLDEKMSLCHARHASKVNQHKQKFQAPVCGFPCNHRHLFYSEHGRILSYAASSQQATLKSQGCPNRDRQIRNQQPLKSVRCNNEQWGLRHPQILHPKKAVSPVSPLQHWPKTSGASSHHHHCPRHCLLWEGI", "sequence_length": 1347, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e46cda43d8aec5dde0dc70eef9239b54fe9f51210345d9e3a1a0302b68be1cd1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5TZJ5.json", "taxon_id": "9606", "uniprot_accession": "Q5TZJ5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spata31-ipr039509.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039509", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spata31-ipr039509.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spata31-like-ipr027970.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027970", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spata31-like-ipr027970.yaml" } ], "pfam_ids": [ "PF14650", "PF15371" ], "protein_name": "Spermatogenesis-associated protein 31A5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENLPFPLKLLSASSLNAPSSTPWVLDIFLTLVFALGFFFLLLPYLSYFRCDDPPSPSPGKRKCPVGRRRRPRGRMKNHSLRAGRECRRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPPHTPDPLACSLPPPKGFTAPPLRDSTLITPSHCDSVAFPLGTVPQSLSPHEDLVASVPAISGLGGSNSHVSASSRWQETARTSCAFNSSVQQDHLSRHPPETCQMEAGSLFLLSSDGQNVVGIQVTETAKVNIWEEKENVGSFTNRMTPEKHLNSLRNLAKSLDAEQDTTNPKPFWNMGENSKQLPGPQKLSDPRLWQESFWKNYSQLFWGLPSLHSESLVANAWVTDRSYTLQSPPFLFNEMSNVCPIQRETTMSPLLFQAQPLSHLGPECQPFISSTPQFRPTPMAQAEAQAHLQSSFPVLSPAFPSLIQNTGVACPASQNKVQALSLPETQHPEWPLLRRQLEGRLALPSRVQKSQDVFSVSTPNLPQESLTSILPENFPVSPELRRQLEQHIKKWIIQHWGNLGRIQESLDLMQLRDESPGTSQAKGKPSPWQSSMSTGEGSKEAQKVKFQLERDPCPHLGQILGETPQNLSRDMKSFPRKVLGVTSEELERNLRKPLRSDSGSDLLRCTERTHIENILKAHMGRNLGQTNEGLIPVCVRRSWLAVNQALPVSNTHVKTSNLAAPKSGKACVNTAQVLSFLEPCTQQGLGAHIVRFWAKHRWGLPLRVLKPIQCFKLEKVSSLSLTQLAGPSSATCESGAGSEVEVDMFLRKPPMASLRKQVLTKASDHMPESLLASSPAWKQFQRAPRGIPSWNDHEPLKPPPAGQEGRWPSKPLTYSLTGSIQQSRSLGAQSSKAGETREAVPQCRVPLETCMLANLQATSEDVHGFEAPGTSKSSLHPRVSVSQDPRKLCLMEEVVNEFEPGMATKSETQPQVCAAVVLLPDGQASVVPHASENLVSQVPQGHLQSMPTGNMRASQELHDLMAARRSKLVHEEPRNPNCQGSCKSQRPMFPPIHKSEKSRKPNLEKHEERLEGLRTPQLTPVRKTEDTHQDEGVQLLPSKKQPPSVSPFGENIKQIFQWIFSKKKSKPAPVTAESQKTVKNRSRVYSSSAEAQGLMTAVGQMLDEKMSLCHARHASKVNQHKQKFQAPVCGFPCNHRHLFYSEHGRILSYAASSQQATLKSQGCPNRDRQIRNQQPLKSVRCNNEQWGLRHPQILHPKKAVSPVSPPQHWPKTSGASSHHHHCPRHCLLWEGI", "sequence_length": 1347, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bbcc3450b5f3739e5ae8f4bf51cbfd8fb29280833dc3bddd6f4ddac812d25a0b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VU36.json", "taxon_id": "9606", "uniprot_accession": "Q5VU36", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spata31-ipr039509.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039509", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spata31-ipr039509.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spata31-like-ipr027970.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027970", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spata31-like-ipr027970.yaml" } ], "pfam_ids": [ "PF14650", "PF15371" ], "protein_name": "Spermatogenesis-associated protein 31A6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENLPFPLKLLSASSLNAPSSTPWVLDIFLTLVFALGFFFLLLPYLSYFHCDDPPSPSPGKRKCPVGRRRRPRGRMKNHSLRAGRECPRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPPHTPDPLACSPPPPKGFTAPPLRDSTLITPSHCDSVALPLGTVPQSLSPHEDLVASVPAISGLGGSNSHVSASSRWQETARTSCAFNSSVQQDPLSRHPPETCQMEAGSLFLLSSDGQNVVGIQVTETAKVNIWEEKENVGSFTNQMTPEKHLNSLGNLAKSLDAEQDTTNPKPFWNMGENSKQLPGPQKCSDPRLLQESFWKNYSQLFWGLPSLHSESLVANAWVTDRSYTLQSPPFLFNEMSNVCPIQRETTMSPLLFQAQPLSHRQPFISSTPQFLPTPMAQAEAQAHLQSSFPVLSPAFPSLIKNTGVACPASQNKVQALSLPETQHPEWPLLRKQLEGRLALPSRVQKSQDVFSVSTPNLPQESLTSILPENFPVSPELRRQLEQHIKKWIIQHWGNLGRIQESLDLMQLRDESPGTSQAKGKPSPWQSSTSTGESSKEAQKVKFQLERDLCPHLGQILGETPQNLSRDMKSFPRKVLGVTSEESERNLRKPLRSDSGSDLLRCTERTHIENILKAHMGRNLGQTNEGLIPVRVRRSWLAVNQALPVSNTHVKTSNLAAPKSGKACVNTAQVLSFLEPCTQQGLGAHIVRFWAKHRWGLPLRVLKPIQCFKLEKVSSLSLTQLAGPSSATCESGAGSEVEVDMFLRKPPMASLRKQVLTKASDHMPESLLASSPAWKQFQRAPRGIPSWNDHGPLKPPPAGQEGRWPSKPLTYSLTGSTQQSRSLGAQSSKAGETREAVPQCRVPLETCMLANLQATSEDVHGFEAPGTSKSSLHPRVSVSQDPRKLCLMEEVVSEFEPGMATKSETQPQVCAAVVLLPDGQASVVPHASENLVSQVPQGHLQSMPTGNMRASQELHDLMAARRSKLVQEEPRNPNCQGSCKSQRPMFPPIHKSEKSRKPNLEKHEERLEGLRTPQLTPVRKTEDTHQDEGVQLLPSKKQPPSVSHFGENIKQFFQWIFSKKKSKPAPVTAESQKTVKNRSCVYSSSAEAQGLMTAVGQMLDKKMSLCHAHHASKVNQHKQKFQAPVCGFPCNHRHLFYSEHGRILSYAASSQQATLKSQGCPNRDRQIRNQQPLKSVRCNNEQWGLRHPQILHPKKAVSPVSPPQHWPKTSGASSHHHHCPRHCLLWEGI", "sequence_length": 1343, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "24843378462371a0ca979acae19356c6bb099212064b829e10264f28e6c29818", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VVP1.json", "taxon_id": "9606", "uniprot_accession": "Q5VVP1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4599-pf15371.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15371", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4599-pf15371.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fam75-pf14650.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14650", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fam75-pf14650.yaml" } ], "pfam_ids": [ "PF14650", "PF15371" ], "protein_name": "Spermatogenesis-associated protein 31E1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGNLVIPLGKGRAGRVESGQRIPPPAPRPSVECTGDDIALQMEKMLFPLKSPSATWLSPSSTPWMMDFILTSVCGLVLLFLLLLYVHSDPPSPPPGRKRSSREPQRERSGRSRSRKISALKACRILLRELEETRDLNYLLESHLRKLAGEGSSHLPLGGDPLGDVCKPVPAKAHQPHGKCMQDPSPASLSPPAPPAPLASTLSPGPMTFSEPFGPHSTLSASGPPEPLLPLKCPATQPHVVFPPSPQPHGPLASSPPPPDSSLAGLQCGSTTCPVPQSSPLHNQVLPPPTRVISGLGCSSDPIWDLYCWREAATTWGLSTYSHGKSQPRHLPDHTSEASFWGDPTPKHMEVGGCTFIHPDVQKLLETLIAKRALMKMWQEKERKRADHPHMTSLGKEWDITTLNPFWNVSTQPQQLPRPQQVSDATTVGNHLQQKRSQLFWDLPSLNSESLATTVWVSRNPSSQNAHSVPLDKASTSLPGEPEVEASSQLSQAPPQPHHMAQPQHFTPAWPQSQPPPLAEIQTQAHLSPPVPSLGCSSPPQIRGCGASYPTSQERTQSVIPTGKEYLEWPLKKRPKWKRVLPSLLKKSQAVLSQPTAHLPQERPASWSPKSAPILPGVVTSPELPEHWWQGRNAIHQEQSCGPPSRLQASGDLLQPDGEFPGRPQSQAEDTQQALLPSQPSDFAGKGRKDVQKTGFRSSGRFSDKGCLGSKLGPDPSRDQGSGRTSVKALDEDKEAEGDLRRSWKYQSVSSTPRDPDKEHLENKLQIHLARKVGEIKEGWIPMPVRRSWLMAKCAVPKSDTHRKPGKLASWRGGKAHVNTSQELSFLHPCTQQILEVHLVRFCVRHSWGTDLQSLEPINVWSGEAQAPPFPQSTFTPWASWVSRVESVPKVPIFLGKRPQNGPGDNRTTSKSVPTVSGPLAAPPPEQEGVQRPPRGSQSADTHGRSEAFPTGHKGRGCSQPPTCSLVGRTWQSRTVLESGKPKPRLEGSMGSEMAGNEAWLESESMSPGDPCSSRALQVLSIGSQWARAEDALQALKVGEKPPTWEVTLGASVRASSGSVQEDLRSTGALGTTGNPSASSVCVAQDPEQLHLKAQVVSEIALIVQVDSEEQLPGRAPGILLQDGATGLCLPGRHMDMLTAADRLPTQAPLSTSQSVSGKNMTASQGPCALLWKGGDSPGQQEPGSPKAKAPQKSQKTLGCADKGEAHRRPRTGEQGHRSKGPRTSEASGRSHPAQAREIGDKQERKYNQLQLEKGQTPPESHFQRKISHHPQGLHPRKGGTRWEDVLQKGKPGADAFQSWGSGPPRQFMDCMADKAWTISRVVGQILVDKLGLQWGRGPSEVNRHKGDFRAQENVPSCCHRGHCHQERSREMRALACSPKATPKGHHCPVKNRGIRDRDSSWAPPPREPVSPAGPHHHRPRMASTSGGPHPQLQELMSAQRCLAS", "sequence_length": 1445, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "81eb2447ba16177f9eadf4065bf16087e0c733fab3cd1a1b05922b6fa0d95108", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZUB1.json", "taxon_id": "9606", "uniprot_accession": "Q6ZUB1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/spata31-like-ipr027970.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027970", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/spata31-like-ipr027970.yaml" } ], "pfam_ids": [ "PF15371" ], "protein_name": "Protein SPATA31F3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMVPSFILWDVGSSVYTYGSLFIIALIIWHVRRSHRGLRLGPIKSCTKCFRRIKQKPSDRTLRVKKRTTKEETEKLQKLLSNMKRQGWLPQEGSVRRLLCSDPSCPICNAMALEIQQLLGVENKKTSSSLLRHSRSFSCLEALSPPKVLNDQSSELSKVLNGQSSELSKVLNGQSSELSKVLNDQSSELSKVLNDQSSELSSQHSKDISLPPKFMQSQSTDQKLTLSAPLSTGNTVLQCYHPAPQQQPEPQGSNAFQDVSGLSSSSMDEHGVPANQQKKRKKTKKLVSKNQAAPSEAEMENKMTFFSHWVNPEVKCDRPEESFAFYKSETGAKPKTGEPKKSSAKVRAEEPNLEKHAKDLKAKPLHAKRNI", "sequence_length": 371, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9cd16f0f7231ecbf204c88cc425e70c5960d2cf929fb9431883afda31668d789", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q80YD3.json", "taxon_id": "10090", "uniprot_accession": "Q80YD3", "uniprot_release": "2026_03" } ], "pfam_id": "PF15371", "short_name": "DUF4599", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4600-pf15372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4600-pf15372.yaml" } ], "pfam_ids": [ "PF15372" ], "protein_name": "Coiled-coil domain-containing protein 169", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKEERNYNFDGVSTNRLKQQLLEEVRKKDAVQLSIFELRHKITELEAKLNTDNEGSEWKTRYETQLELNDELEKQIVYLKEKVEKIHGNSSDRLSSIRVYERMPVESLNTLLKQLEEEKKTLESQVKYYALKLEQESKAYQKINNERRTYLAEMSQGSGLHQVSKRQQVDQLPRMQENLVKTGRYNPAKQKTVSAKRGPVKKITRPNHLPELHP", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "63f725d33d5260a5dd3acbde0d33986bd57f2b0b4d1a6d8a1b94fb053c5a7268", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/A6NNP5.json", "taxon_id": "9606", "uniprot_accession": "A6NNP5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Xenopus laevis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4600-pf15372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4600-pf15372.yaml" } ], "pfam_ids": [ "PF15372" ], "protein_name": "Coiled-coil domain-containing protein 169", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENVGDGSAAAPVDSYRLTEEIQLEKNKKEMLQMSTFELKNTIAELEQRLNSVEDEGNEWKTRYETQIELNKQLERQIYILREKSENIRGNPTDRLSSIRSLDQMPVGALNQFVKHLDDEKILLENQLKNFELRIEQEAKAYYKVNNERRMYISEIAQTSVTQEAAKKQQSDPAHATREKPAFKAKYNGLAKRRTMTKRRGGMTKGSHPSNMKH", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7ab1ee8fff52a8f59dc055794b7f423c2e21704d445677a62a65029fa5ece62d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3KPT0.json", "taxon_id": "8355", "uniprot_accession": "Q3KPT0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4600-pf15372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4600-pf15372.yaml" } ], "pfam_ids": [ "PF15372" ], "protein_name": "Coiled-coil domain-containing protein 169", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGEGHGDTFEGVSTDRLKLELLEEIHMKDVVQLSTLEIRHKIAELEANLNGDLAGSEWKTRYETQLELNDQLEKQIVSLKEKMEKMRGNPSDRLSSIRVYEKMPVESLNVLLKQLEKEKRSLESQVKEYAFRLEQESKAYHRTNNERRSYIAEMTQVSGSNQVSKRQQMDPLPRMKESPVKTGRHNSMNQKTTNAKKGPVKKVPRSNHLPKLNP", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d2adcce53bbeb1792a3a71ee8ad811b7e34821eee2bd9f38128d57373eff4a8a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BXX9.json", "taxon_id": "10090", "uniprot_accession": "Q8BXX9", "uniprot_release": "2026_03" } ], "pfam_id": "PF15372", "short_name": "DUF4600", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/saxo5-like-pf15373.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15373", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/saxo5-like-pf15373.yaml" } ], "pfam_ids": [ "PF15373" ], "protein_name": "Stabilizer of axonemal microtubules 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATGALLPCSRPCPMSRLDFLKASHFSLGPDLRLHEGTMRTTSHRDFAYPAATREPPSLQPPPALLFPMDPRWDREERVSEAHRAFPPPSTPPWELLQAQARERTLAMQAGNLHLHEDAHAGIGLSNAHAAYGWPELPARTRERIRGARLIFDRDSLPPGDRDKLRIPPTTHQALFPPHDARPQPRAPSCHLGGPNTLKWDYTRQDGTSYQRQFQALPGPPALRCKRASSGVELGDCKISYGSTCSEQKQAYRPQDLPEDRYDKAQATAHIHCVNIRPGDGLFRDRTTKAEHFYAREPEPFVLHHDQTPESHILKGNWCPGPGSLDTFMQYFYGQPPPPTQPPSRHVPHEKLQSHVTLGEPKLLKRFFKTTMGSDYCPSEWRQVQKAPNLHLQQSYLPRGTGEFDFLTMNQKMLKPHRTPPAPVTEEMLQRCKYSHMEPPLGGLRFFSTQYKDEFPFKYQGPAALRLKNPQEGFVPLGTPHQRGCREKIDPLVPQPPMYLCPSQQ", "sequence_length": 505, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d35a79e5649f674b938c8eda227c78027b76a47f557e48d5531986d28448840a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NA69.json", "taxon_id": "9606", "uniprot_accession": "Q8NA69", "uniprot_release": "2026_03" } ], "pfam_id": "PF15373", "short_name": "SAXO5-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fsaf1-pf15375.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15375", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fsaf1-pf15375.yaml" } ], "pfam_ids": [ "PF15375" ], "protein_name": "40S small subunit processome assembly factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAERELDSSELPGSEALLDAVLRTLYDLGETEGETEQKRTRKKKEKKRDSETVADRAAEPLPLPASPGRDQRKSASSFFKKLREELQSAPAAPSEVPAATTAVSLFPLENDSKLVEVVEFHSRSEKRKPKSEEDKPAKNKTKVLEKDVVIQEFNLEKARLEVHRFGITGYGKGKERVLERERAIMLGAKPPKNTYVNYKVLQEQIKEKRTSMEEEKRAAQETDIFKRKKRKGRSQEDRRSKKLAPSILSSGRAAQVGKFRNGTLILSPADIKKINSSRVSK", "sequence_length": 282, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "04d1565dc01cefb8d3df598ff1032581fedb729d48b29b460f62e7ec871d4f60", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3KRF3.json", "taxon_id": "10116", "uniprot_accession": "Q3KRF3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fsaf1-pf15375.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15375", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fsaf1-pf15375.yaml" } ], "pfam_ids": [ "PF15375" ], "protein_name": "40S small subunit processome assembly factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAEHDSDSVEPPGSEALLDAVLRTLYDLGETEGETEQKRIRKKKAKKRDSETIEDVAVEPLPLPGSPVRGQKKSASSFFQKLREELQSAPAAPSEVPVTTAVSLSPPKNGSKLVEVVEFQSKSKKRKLKSDEDEPAKNKTKVVKKDVDIQEFNLEKARLEVHRFGITGYGKGKERVLERERAIMLGAKPPKNTYVNYKVLQKQIKEKKIAVEEEKRAARETDIFKKKKKKGRGQEDRRSKKSAPSILSSGQVGQVGKFRNGTLILSPTDIKKINSSRVAK", "sequence_length": 281, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "61e39dc002887af1691980301633786b3e8ea42f20fdb713ce7734711f0beae1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CIL4.json", "taxon_id": "10090", "uniprot_accession": "Q8CIL4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fsaf1-pf15375.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15375", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fsaf1-pf15375.yaml" } ], "pfam_ids": [ "PF15375" ], "protein_name": "40S small subunit processome assembly factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRVDSSADPTMSQEQGPGSSTPPSSPTLLDALLQNLYDFGGTEGETEQKKIIKKRENKKRDVMASAALAAEPSPLPGSLIRGQRKSASSFFKELREERHCAPSGTPTGPEILAAAVPPSSLKNNREQVEVVEFHSNKKRKLTPDHNKNTKQANPSVLERDVDTQEFNLEKARLEVHRFGITGYGKGKERILEQERAIMLGAKPPKKSYVNYKVLQEQIKEKKAAKEEEKRLAQETDIFKKKKRKGQEDRKSKKKSAPSILSNGRIGQVGKFKNGTLILSPVDIKKINSSRVAK", "sequence_length": 293, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d85eb3e4c337bb2a25daef63802c1def13a7100f5ed27e34907fe50001cf543f", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NDD1.json", "taxon_id": "9606", "uniprot_accession": "Q8NDD1", "uniprot_release": "2026_03" } ], "pfam_id": "PF15375", "short_name": "FSAF1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4603-pf15376.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4603-pf15376.yaml" } ], "pfam_ids": [ "PF15376" ], "protein_name": "Uncharacterized protein KIAA0232", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRPVCTVVVDGLPSESTSSSYPGPVSVSDMSLLHALGPVQTWLGQELEKCGIDAMIYSRYILSLLLHDSYDYDLQEQENDILSWEKGAYKKWGRSKKKCSDLTLEEMKKQAAVQCLRSASDESSGIETLVEELCCRLKDLQSEQEEKIHKKLEGSPSPEEELSPTAKDQVEMYYEAFPPLSEKPVCLQEIMTVWNKSKPCSYSSSSSSSTVPPASTDTSSPKDCNSESEAVRERSSVASVPMHEKAQSRSRHEKESKLSSSTIEEKPAFYKRQIRHKPEGKTRPRSWSSGSSEAGSSSSGNQGELKASMKYVKVRHKAREIRNRKGRNGQNRHSLKHCGKAERGVHAGSGGSSSSSSNGSIRQLCKRGKRPAKETGRSDSGNTAVKDLYVDSRNNKEYKEEPLWYTEPIAEYFVPLSRKSKLETTYRNREDTSTLTAEAVEDLSDSVRGLCISNSNIHRTYLAAGTFIDGHFVEMPAVINEDIDLAGTSLCSLPEDNKYLDDIHLSELTHFYEVDIDQSMLDPGASETMQGESRILNMIRQKSKENTDFEAECCIVLDGMELQGERAIWTDSTSSVGAEGFFLQDLGNLAQFWECCSSSSGDADGESFGGDSPVRLSPILDSTMLSSHILAGNQEPFSNINEGSGINSCFSVFEVQCSNSVLPFSFETLNLGSEHADSSANMLGKTQSRLLIWTKNSAFEENEHCSNLSTRTCSPWSHSEEARSDNETLNIQFEESTQFTAEDINYVVPRVSSDFVDEELLDFLQDETCQQNSRTLGEIPTLVFKKRSKLESVCGIQLEQKAESKNFETTHACSESSPHGDGYSSGVIKDIWTKMVGRSSVAAVETERTGEELFSTDVNNYCCCLDTEAKMEALQEPSRAVQRSEYHLWEGQKENMEKRAFVSSELSKVDGGDYTTPSKPWDVAQDKENTFILGGVYGELKTFNSDGEWAVVPPGHTKGSLLQCAASDVVTIAGTDVFMTPGNSFAPGHRQLWKPFVSFEQSDMPKRGENGVNKGFSFIFHEDLLGACSNFQVEDPGLEYSLSSFDLSNPFSQVLHVECSFEPEGIASFSPSFKPKSILCSDSDSEVFHPRICGVERTQYRAIRISPRTHFRPISASELSPGGGSESEFESEKDEASVPIPSHVDVFEDPQADLKPLEEDAEKEGHYYGKLELESGKFLPRLKKSGMEKSAQTSLDSQEEATGILPKQNQCLECNFNESLEINLESSAANCKIMTQCEEEMSEFCSCKAGCQFPACEDNPVSSGQLEEFPVLNTDVQEVTRNQEKQSWWEKALYSPLFPTSECEECYTNAKGENGIEECPDAKETPSREERLLDFNRVSSVYEARCTGERGSETKPNGLHRKMCSSASSDTGDTGSEAGGEWVGPSREELFSRTHL", "sequence_length": 1396, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cf7c0872e80594ad5e3f84883274ae1450e6c4bf750a7ac6b3c7798d9bb9ebb5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q80U59.json", "taxon_id": "10090", "uniprot_accession": "Q80U59", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4603-pf15376.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4603-pf15376.yaml" } ], "pfam_ids": [ "PF15376" ], "protein_name": "Uncharacterized protein KIAA0232", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYPICTVVVDGLPSESSSSSYPGPVSVSEMSLLHALGPVQTWLGQELEKCGIDAMIYTRYVLSLLLHDSYDYDLQEQENDIFLGWEKGAYKKWGKSKKKCSDLTLEEMKKQAAVQCLRSASDESSGIETLVEELCSRLKDLQSKQEEKIHKKLEGSPSPEAELSPPAKDQVEMYYEAFPPLSEKPVCLQEIMTVWNKSKVCSYSSSSSSSTAPPASTDTSSPKDCNSESEVTKERSSEVPTTVHEKTQSKSKNEKENKFSNGTIEEKPALYKKQIRHKPEGKIRPRSWSSGSSEAGSSSSGNQGELKASMKYVKVRHKAREIRNKKGRNGQSRLSLKHGEKAERNIHTGSSSSSSSGSVKQLCKRGKRPLKEIGRKDPGSTEGKDLYMENRKDTEYKEEPLWYTEPIAEYFVPLSRKSKLETTYRNRQDTSDLTSEAVEELSESVHGLCISNNNLHKTYLAAGTFIDGHFVEMPAVINEDIDLTGTSLCSLPEDNKYLDDIHLSELTHFYEVDIDQSMLDPGASETMQGESRILNMIRQKSKENTDFEAECCIVLDGMELQGERAIWTDSTSSVGAEGLFLQDLGNLAQFWECCSSSSGDADGESFGGDSPVRLSPILDSTVLNSHLLAGNQELFSDINEGSGINSCFSVFEVQCSNSVLPFSFETLNLGNENTDSSANMLGKTQSRLLIWTKNSAFEENEHCSNLSTRTCSPWSHSEETRSDNETLNIQFEESTQFNAEDINYVVPRVSSNYVDEELLDFLQDETCQQNSRTLGEIPTLVFKKTSKLESVCGIQLEQKTENKNFETTQVCNESPHGDGYSSGVIKDIWTKMADTNSVATVEIERTDAELFSADVNNYCCCLDAEAELETLQEPDKAVRRSEYHLWEGQKESLEKRAFASSELSNVDGGDYTTPSKPWDVAQDKENTFILGGVYGELKTFNSDGEWAVVPPSHTKGSLLQCAASDVVTIAGTDVFMTPGNSFAPGHRQLWKPFVSFEQNDQPKSGENGLNKGFSFIFHEDLLGACGNFQVEDPGLEYSFSSFDLSNPFSQVLHVECSFEPEGIASFSPSFKPKSILCSDSDSEVFHPRICGVDRTQYRAIRISPRTHFRPISASELSPGGGSESEFESEKDEANIPIPSQVDIFEDPQADLKPLEEDAEKEGHYYGKSELESGKFLPRLKKSGMEKSAQTSLDSQEESTGILSVGKQNQCLECSMNESLEIDLESSEANCKIMAQCEEEINNFCGCKAGCQFPAYEDNPVSSGQLEEFPVLNTDIQGMNRSQEKQTWWEKALYSPLFPASECEECYTNAKGESGLEEYPDAKETPSNEERLLDFNRVSSVYEARCTGERDSGAKSDGFRGKMCSSASSTSEETGSEGGGEWVGPSEEELFSRTHL", "sequence_length": 1395, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "775447ad611099f2e58709d2569b6f533e0fb921a07930279efcb6802c9b257d", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/Q92628.json", "taxon_id": "9606", "uniprot_accession": "Q92628", "uniprot_release": "2026_03" } ], "pfam_id": "PF15376", "short_name": "DUF4603", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4604-pf15377.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15377", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4604-pf15377.yaml" } ], "pfam_ids": [ "PF15377" ], "protein_name": "Uncharacterized protein KIAA1143 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKRNQVSYVRPAEPAFLSRFKERVGYREGPTVETKKIQPQLPDEDGNESDKEDEQPQVVVLKKGDLTAEEVMKIKAEIKAAKADEEPPPADGRIMYRKPVKRSSDEKCSGLTASSKKKKTNEDDVNKQSPVRKNSQKQIKNSSLLSFGSEDENE", "sequence_length": 155, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8f19088d84cc8a654cfa3fc2757d05575fab45809614d9a45a963b6bbdc93061", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5RKH3.json", "taxon_id": "10116", "uniprot_accession": "Q5RKH3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4604-ipr027911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4604-ipr027911.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4604-pf15377.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15377", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4604-pf15377.yaml" } ], "pfam_ids": [ "PF15377" ], "protein_name": "Uncharacterized protein KIAA1143 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKRNQVSYVRPAEPAFLSRFKERVGYKEGPTVETKKIQPQLPDEDGNHSDKEDEQPQVVVLKKGDLTAEEVMKIKAEIKAAKTDEEPPPADGRIVYRKPVKRSSDEKCSGLTASSKKKKTNEDDVNKQSSVRKNSQKQIKNSSLLSFDSEDENE", "sequence_length": 155, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "191b4fa8eddce244d61058c5525e97ce0ca5535365e2e9494af729845ffaad04", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8K039.json", "taxon_id": "10090", "uniprot_accession": "Q8K039", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4604-ipr027911.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027911", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4604-ipr027911.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4604-pf15377.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15377", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4604-pf15377.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q96AT1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15377" ], "protein_name": "Uncharacterized protein KIAA1143", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": 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"unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4605-ipr027953.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027953", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4605-ipr027953.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": 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"data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e26ab858769d7a31c67b06e00419f07897873785da2251c5add623afc04e132d", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MCSAGELLRGGDGGERDEDGDALAEREAAGTGWDPGASPRRRGQRPKESEQDVEDSQNHTGEPVGDDYKKMGTLFGELNKNLINMGFTRMYFGERIVEPVIVIFFWVMLWFLGLQALGLVAVLCLVIIYVQQ", "sequence_length": 132, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e26ab858769d7a31c67b06e00419f07897873785da2251c5add623afc04e132d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N8J7.json", "taxon_id": "9606", "uniprot_accession": "Q8N8J7", "uniprot_release": 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"mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4605-pf15378.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15378", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4605-pf15378.yaml" } ], "pfam_ids": [ "PF15378" ], "protein_name": "Protein FAM241B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVRILANGEIVQDDDPRVRTTTQHRSSSSQQGFFNRGHGAPPGGPGPRQQQAGARLGAAQSPFSDLNRQLVNMGFPQWHLGNHVVEPVTSILLLFLLMMLGVRGLLLVGLVYLVSHLSQR", "sequence_length": 120, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8bc8f2e0ab29c6714dddc01d80bd0390fe97411b16fd8ce71f4fbb812745f3f6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D882.json", "taxon_id": "10090", "uniprot_accession": "Q9D882", "uniprot_release": "2026_03" } ], "pfam_id": "PF15378", "short_name": "DUF4605", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4606-pf15379.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15379", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4606-pf15379.yaml" } ], "pfam_ids": [ "PF15379" ], "protein_name": "Uncharacterized protein C8orf48 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15379", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4606-pf15379.yaml" } ], "pfam_ids": [ "PF15379" ], "protein_name": "Uncharacterized protein C8orf48", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAICPELAQTDKSALANLSDETETLKNSTDEVQTSSSFSSSGGRQSSPLTSGSKLEREKQTPSLEQGDTQSELLDYKNYEKKLSKKWINYLKLKDSNFERHQPDTKLPTEITRVSDEELNALQSYCTMKINLIHRRGDSKKKTSSRHKKLHLGLDVEASERDAFSCTVPDELLNRIYFKNMRTTPKQEAAAKQHISYQCPYCNRKRAELALSAFLKQKKTLLESFLLQERIDEHLHTKDFLTRIGEAHQDFPRLSDDPRIIWKRLTEKSHIRYSGFERSETEQKLQRDGNSACHLPFSLPFLKRLTLIKPELVIVNDNV", "sequence_length": 319, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f18dcb2e5ae814a75d9f18d139c322edf590f3e31295048e4d4a37948a876708", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96LL4.json", "taxon_id": "9606", "uniprot_accession": "Q96LL4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15379", "short_name": "DUF4606", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4607-pf15380.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15380", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4607-pf15380.yaml" } ], "pfam_ids": [ "PF15380" ], "protein_name": "Uncharacterized protein C12orf42", "registry_status": 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"ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4611-pf15387.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15387", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4611-pf15387.yaml" } ], "pfam_ids": [ "PF15387" ], "protein_name": "EKC/KEOPS complex subunit GON7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELLGEYIGLEGRRQQLRVPCEAPGVTDPFQSLLSGVAQMRELVTELFGSQVQQEAQDRVTAAPDEALDGDDEDDSEDENNTDNRTNSDGPSAKRQKTPS", "sequence_length": 100, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "75457e7e1442c54964225cec72fe03d497046c1144cadf820b962ea01ce5d9fb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C8B3.json", "taxon_id": "9913", "uniprot_accession": "P0C8B3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4612-pf15389.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15389", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4612-pf15389.yaml" } ], "pfam_ids": [ "PF15389" ], "protein_name": "Uncharacterized protein C1orf21", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGCASAKHVATVQNEEEAQKGKNYQNGDVFGDEYRIKPVEEVKYMKNGAEEEQKIAARNQENLEKSASSNVRLKTNKEVPGLVHQPRANMHISESQQEFFRMLDEKIEKGRDYCSEEEDIT", "sequence_length": 121, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f9efe0238bc29dce79ea481162d6cea9380727e689501ab67ceced8794b35a3a", "sequence_version": 1, "source_url": 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"WD repeat and coiled-coil-containing protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELGKAKLLRTGLNTLHQAIHPVHGIAWTDGKQVCLTSLFSVEGEPKFGDTNVIGQFEHVLGLFWGPLCCSGSPALLAVQHKKHVTVWQLQLSALEQNKLLCTQTCEMSEPFPLLSQGCVWHPKMDVLAILTKRDASVLFSVRVDNRRVKADIKGSGLIHCACWTKDGTRLVVAIGSALHSYTWNDIQKSLVPCSFCPIFDVGGYICAIESTDEAQVAVATELPLDKICGLNAGMAFDLPNESEGLCRPSAALTVDTDYYLDRRRSCDSERSGHASSGPIDLTNLLAKHRKSDPSPLIHLRKRDNLTGTGQDSSHLILVTYERKVTTTRKVSIPGILVPDIIAFDPNGHTVAVASNTCNMILVYCITDSSMPNVQQIQLQKNERPKGVCFFTNKMLLFMIGRQKSNDPAFLPSSNTDKYILRLTAKELVFDEESTTKSESPSQHHGIRRHSENFTKEDRLSIKDLILPGGSVIVSPSSRRKLIEEVRSSDLSPVASSADFSDRASSASSVTLENYDMDHITRMASLAVAGQASRDSSRPCSPRYETSEKLYSDATPPKNSKEKNLEQLTQNMERIFTRFAEVQQCLSEIREFTQNGKKIACSYPSAYEPQYVHITCQKQLSENVYTDERRPLLLCGGRICLRVVQELFGLTVVEMMHGPMWITLVADADGFVPLTFKHKDELTIRSARRKSPARPPSGADDFPPESPKSPSMEK", "sequence_length": 714, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "435f9750ce323530bf02ec2ea5e48b3ce24c28c1216558a82e9e4eef7f1aa4ab", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5RFV8.json", "taxon_id": "7955", "uniprot_accession": "Q5RFV8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/wdcp-pf15390.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15390", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/wdcp-pf15390.yaml" } ], "pfam_ids": [ "PF15390" ], "protein_name": "WD repeat and coiled-coil-containing protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELGNGKLPRTGLNSLNQAVHPTWGLAWTDGNRVVLTDLQLHSGEAKFGDSRVIGRFESVCGVCWAPVRTVRSPALLAIQHRKLVSVWQLCPSTAGASKWQASQTSEVRESLPILPRGCVWHPKDAVLTVLTAQGVSIFPNVHQDGSRVKVDVNTKGRVYCACWTLDGQRLVVAIDSNLHSYIWDSSQKSLHSCSFCPVFPVNCSIRSIEATGNSQVAIATELPLHKLCSLNASEALDGPPNGDDGSVHTRPVDEQVATMDMNSGVTVSPFSVPLDLTHIHFNPSQAEQSSLICLRKKDYLTGTGQDSSHLILVTFKKAITITKKVAIPGILVPDLIAFNLTAELVAVASNTCNVILIYSAAPSSMPNIQQIQLESNERPKGICFLTDRLLLIAVGKQKPSEAAFLPSSEYGQYTVRLIVREMAQGSESSGTSAESQGAYSDFTALLSKADREKFTDSLSPGSSPLSQGLLLTPNSSTQSGRSGRALIQEIKSPLSPLSSDSVVHETLHRPPWLCPALPRPSRTPEHTSTPELNSPQRENLQKEKETCPLSRELEILSRHLVAMQQYLSELTGFLHKEKRVAPAYPPSQDAPYVHLIYQNPCSVGPTERRAVLLCDGKLRLSTVQQMFGLHLVEMLHEVLSSIPSNHMVTHNLHGPGGLFWSV", "sequence_length": 663, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bf3b53529f9e379d1d82efc66147eb8202e8e364e46d473fdea19155c08b7d6b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NV72.json", "taxon_id": "10090", "uniprot_accession": "Q6NV72", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/wdcp-pf15390.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15390", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/wdcp-pf15390.yaml" } ], "pfam_ids": [ "PF15390" ], "protein_name": "WD repeat and coiled-coil-containing protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELGKGKLLRTGLNALHQAVHPIHGLAWTDGNQVVLTDLRLHSGEVKFGDSKVIGQFECVCGLSWAPPVADDTPVLLAVQHEKHVTVWQLCPSPMESSKWLTSQTCEIRGSLPILPQGCVWHPKCAILTVLTAQDVSIFPNVHSDDSQVKADINTQGRIHCACWTQDGLRLVVAVGSSLHSYIWDSAQKTLHRCSSCLVFDVDSHVCSITATVDSQVAIATELPLDKICGLNASETFNIPPNSKDMTPYALPVIGEVRSMDKEATDSETNSEVSVSSSYLEPLDLTHIHFNQHKSEGNSLICLRKKDYLTGTGQDSSHLVLVTFKKAVTMTRKVTIPGILVPDLIAFNLKAHVVAVASNTCNIILIYSVIPSSVPNIQQIRLENTERPKGICFLTDQLLLILVGKQKLTDTTFLPSSKSDQYAISLIVREIMLEEEPSITSGESQTTYSTFSAPLNKANRKKLIESLSPDFCHQNKGLLLTVNTSSQNGRPGRTLIKEIQSPLSSICDGSIALDAEPVTQPASLPRHSSTPDHTSTLEPPRLPQRKNLQSEKETYQLSKEVEILSRNLVEMQRCLSELTNRLHNGKKSSSVYPLSQDLPYVHIIYQKPYYLGPVVEKRAVLLCDGKLRLSTVQQTFGLSLIEMLHDSHWILLSADSEGFIPLTFTATQEIIIRDGSLSRSDVFRDSFSHSPGAVSSLKVFTGLAAPSLDTTGCCNHVDGMA", "sequence_length": 721, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cc45d1dbd67b781ac44c44c20267408808bfba3daa5845b9335ba9e1b4a9d464", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H6R7.json", "taxon_id": "9606", "uniprot_accession": "Q9H6R7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15390", "short_name": "WDCP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4614-pf15391.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15391", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4614-pf15391.yaml" } ], "pfam_ids": [ "PF15391" ], "protein_name": "Uncharacterized protein C19orf44 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASTRRPFGPPHGAFDFRDMFFDSSKMEEIRNVQARSLGQMAPGQSRILKRNQTMDEKYLLPKEEALAGTGVRLSLRPPTISSKSRASEALRKLAQIETKILKRRQVPTAWSGMESDSTASERSLPQRTDTTSVSSQYPLRTFQKQVCKTSVVGDDGQSGKGSRFLKKKELPAEARSPVLAAETEKQVLLPTQREPARKYDAPDSDEEEMKVLLGSLMESSGEKERNGNQELPGTRSDLGKVFLDLTPDQPGVLCLLSADQSSLKSTSVSLRAQSLQTRSGGDPASLTTSPSILRDDFSRSASSKRECIKLASSPSRMETESSEEPVSEAAADSLHDFRINILSIDDLVLADGYKSDGEQKGVTTVVEDEEDLTTEHEISEHPGASSTAAVWSHSMSSARSMETPTALSVSPVYSEDFEQFSGPLALEESLDRTLDTLSKFSSGEQTDTVSRQPLSRTEWGRGVTRVVKETAVQTLDPAFAYQWTKAGGMAAIGPTLGGGYVDPVPIASHIISADAIEALTAYSPAVLALNDMLKQQLSLTQQFIEASHHLHHSLLRSLDEDSFHYHTLEEAKEYIRCHRPAPLTMEAALQEVRKELEVHLDINDSHVEASKAAALPAEPIDGL", "sequence_length": 624, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ebc483c076c8c36f8554673f4dc7b9c775e5c56ccc523fe19287fad693e7d57c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6AXP1.json", "taxon_id": "10116", "uniprot_accession": "Q6AXP1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4614-ipr027884.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027884", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4614-ipr027884.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4614-pf15391.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15391", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4614-pf15391.yaml" } ], "pfam_ids": [ "PF15391" ], "protein_name": "Uncharacterized protein C19orf44 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASTRRPFGPPRSGFDLRDMFLDSSRMEEIRNLQARSLGQVTPGQSRILKRNQTMDEKYLMPKEEAMAGRGVSLGLRPPTISSKTRASEALRKLAQIETKILNRKQVPMAWSDVESDSTSIEQSLPKRTGAASVSSQYPHRTFQKQVNKTCVSKSDGPSGNGSRFLKKKELPTEARSPGLAVGTGKQALLPTKKESASDEEEEMLLLRSLMESSREKEANRNQELPGSSVSRSNLGKVFLDPTPDQPGVLSLLSVDQSSLKSPRPIQSTRVGLRTHSRQASSAGDTVSITASPPILDDFSKSASSKMGCIKLASSPSRTELESSEEPVSEAAADSLHDFRINILSIDDLVLADGDKSDGDQREEDCVREGISVRSSSPTSPTRLEAQMWPKNCVFQGTATVVGDGEGLTTESDVSEPPGTSSSAAVQSHSMSRALTASPAYSEDFEQFSGPLALEESLDRTLDTLSKFSSSGQTDIVARQPLSRTEWGRGVTRVVKETAVQTLDPAFAYQWSKAGGIAAVGPALGGAYVDPAPIASHIVSADAIEALTAYSPAVLALNDMLKQQLSLTQQFIEASHQLHGSLLQSLDGDSFHYHTLEEAKEYIRCHRPAPLTMEAALQEVREELQVPASEACLGTCPPRNQ", "sequence_length": 641, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4b50b1fb22fa86fa5d71bdb533fd9f766904b190d9322de04ee723b2dce17d07", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q922C1.json", "taxon_id": "10090", "uniprot_accession": "Q922C1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4614-ipr027884.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027884", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4614-ipr027884.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4614-pf15391.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15391", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4614-pf15391.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9H6X5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15391" ], "protein_name": "Uncharacterized protein C19orf44", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ff0b686fcd6481ffc6078120c02a909f863f378989d0bcd4afb6260ece3a04c2", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MASARKASRPMRDVFGDFSDVSLEDSTMEEIRNFQISRNLTKIAPGHSRFLKRNQTLDEKHLLLKENPVLGSGPRLASCRPPTTASRIRANAALMKLAQLETRIMNRKLQRNLSDTESDSMTADAGLPKRADRILSGGALELASQNTDKTSQNQARELPVTENNAQNAKVSRFLKKKQAPVENISPEAPAGKERTLQTPKQKEPARTFDSPDSDEEEMKVLLGSLMDSSREKNTNQGFSSANVSEEEERKLFSVPSQLRAFTVPSVELSSAKPSQTSHLPTSLAADRTLHSTRSRADYPQSHVSSDTASHTPSVSITGAFSNSVSLKMGHVKLVSSPGRSEAETVDEPVSEGADDSLDEFRINILSLDGLAPAVSENSDLEQEEESAQRQKTAGKIFRAEASTGQDAPRQAQARSWASQGKAASAEGDESEVSEHLSASSASAIQQDSTSSMQPPSEAPMVNTVSSAYSEDFENSPSLTASEPTAHSKESLDRTLDALSESSSSVKTDLPQTAESRKKSGRHVTRVLVKDTAVQTPDPAFTYEWTKVASMAAMGPALGGAYVDPTPIANHVISADAIEALTAYSPAVLALHDVLKQQLSLTQQFIQASRHLHASLLRSLDADSFHYHTLEEAKEYIRCHRPAPLTMEDALEEVNKEL", "sequence_length": 657, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ff0b686fcd6481ffc6078120c02a909f863f378989d0bcd4afb6260ece3a04c2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H6X5.json", "taxon_id": "9606", "uniprot_accession": "Q9H6X5", "uniprot_release": "2026_03" } ], "pfam_id": "PF15391", "short_name": "DUF4614", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4615-pf15393.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15393", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4615-pf15393.yaml" } ], "pfam_ids": [ "PF15393" ], "protein_name": "UPF0488 protein C8orf33 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAPGRPARETAAAPGPGRPTCRDAASRTKKQKKKTRDGASVANGSGKTPEKQDPKEAPLSAEAQAEQLARELAWCVEKLELGLKMQRPTPKQKEQALGAIRTLRSQRTPLPRKRQLMRSLFGDYRAQIEAEWREALQALRTAAHSAQVQPVGEAARKKSRRVCRPRPEGRSKGTSDTRDEEFRFNFF", "sequence_length": 188, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bd981619be5a9eefcc71dd923b509a5b5022dcd1e37589bcfd245d94214692fd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2KID8.json", "taxon_id": "9913", "uniprot_accession": "Q2KID8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4615-pf15393.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15393", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4615-pf15393.yaml" } ], "pfam_ids": [ "PF15393" ], "protein_name": "UPF0488 protein C8orf33 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEPGRPAREAPAASSRKTHRAPRRPRPSRSASGASEPPLRSSVQPACDSAAGTHPVGNTVAMKQKKKKTPNRVSGTNGSEKPSEKPAPDEAPPSAEAQAEQLARELAWCVEQLELGLKTQRPTPKQKEQAVGAIRTLRSEKTPLPRKRQLMRSLFGDYRAQMDAEWREALRALKAATHSAQVQLVSEATRKKSGRVCRPRPAERAKTTPDLTSEEFRFNFF", "sequence_length": 222, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "675f69911fac84acaae94b84584b3855e504f2e305ecd6afcd7934141e2b162d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3U6N9.json", "taxon_id": "10090", "uniprot_accession": "Q3U6N9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4615-pf15393.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15393", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4615-pf15393.yaml" } ], "pfam_ids": [ "PF15393" ], "protein_name": "UPF0488 protein C8orf33", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAALGHLAGEAAAAPGPGTPCASRGARLPGPVSSARNPSTVCLCPEQPTCSNADSRAHPLGDEGGTASKKQKNKKKTRNRASVANGGEKASEKLAPEEVPLSAEAQAQQLAQELAWCVEQLELGLKRQKPTPKQKEQAIGAIRTLRSKRTPLPRKRQLMHSLFGDYRAQMEAEWREALRALRAAAYSAQVQPVDGATRKKSQRVCRPRSIWRAKATLDMPDEEFRFNFF", "sequence_length": 229, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "08dab6b348d90f74b2f9b405d62f8fa0a566a92cf931d45f0a376b9bd70b0888", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H7E9.json", "taxon_id": "9606", "uniprot_accession": "Q9H7E9", "uniprot_release": "2026_03" } ], "pfam_id": "PF15393", "short_name": "DUF4615", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4616-pf15394.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15394", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4616-pf15394.yaml" } ], "pfam_ids": [ "PF15394" ], "protein_name": "Uncharacterized protein C14orf93 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFSATILFSPPSGSEARCCCCACKSETSQGSTGSQGGNPPASTPITVTGHGLAVQSSEQLLHIIYQRVDKAVGLAEAALGLARANNELLKQLQEEVGELRQGKVCTADEDRESRARTPPPEEPGVLKGSPGEASNSLPAMEEECDSVGSGVQVVIEELRQLGAASTVGQGPLGFFAAPQRDARLPGCTLAAVEGAPLLNPMADDYVASEGSIQRVLVPAYAKQLSPATQLAIQRASSETGPESGTKLPATRPEGVLGSAALDSALDESGAGGAGELSRSLGFVGSPCRIRGTGQKNSRRKRDLVLSKLVHNVHNHITNDKRFNGSESIKSSWNISVVKFLLEKLKQELMVSPHNYTDKELKGACVAYFLTKRREYRNSLNPFKGLKEKEEKKLRSRRYRLFANRSSIMRHFGPEDQHLWKDVTEELMSDEEDSLNEPGVWVARSPRFRAQRLTELCYHLDANSKHGTKANRVYGPPSDRLPSVEAQLLPPELYNPNFQEDEGGGNEKGPVSPSYDQPHKTSCPDLNSFIEIKVEKDEYTL", "sequence_length": 541, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9252fb7822753f008ab7731cb2f378d313f473727ab419fdcfbb463ec2bdcd57", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8K2W9.json", "taxon_id": "10090", "uniprot_accession": "Q8K2W9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4616-pf15394.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15394", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4616-pf15394.yaml" } ], "pfam_ids": [ "PF15394" ], "protein_name": "Uncharacterized protein C14orf93", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFSATILFSPPSGSEARCCCCACKSETNGGNTGSQGGNPPPSTPITVTGHGLAVQSSEQLLHVIYQRVDKAVGLAEAALGLARANNELLKRLQEEVGDLRQGKVSIPDEDGESRAHSSPPEEPGPLKESPGEAFKALSAVEEECDSVGSGVQVVIEELRQLGAASVGPGPLGFPATQRDMRLPGCTLAASEAAPLLNPLVDDYVASEGAVQRVLVPAYAKQLSPATQLAIQRATPETGPENGTKLPPPRPEDMLNAAAALDSALEESGPGSTGELRHSLGLTVSPCRTRGSGQKNSRRKRDLVLSKLVHNVHNHITNDKRFNGSESIKSSWNISVVKFLLEKLKQELVTSPHNYTDKELKGACVAYFLTKRREYRNSLNPFKGLKEKEEKKLRSRRYRLFANRSSIMRHFGPEDQRLWNDVTEELMSDEEDSLNEPGVWVARPPRFRAQRLTELCYHLDANSKHGTKANRVYGPPSDRLPSAEAQLLPPELYNPNFQEEEDEGGDENAPGSPSFDQPHKTCCPDLNSFIEIKVEKDE", "sequence_length": 538, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "983168746244d1644b6179a4fb3bc89154ba9adbb876c9955cccaa846ce36014", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H972.json", "taxon_id": "9606", "uniprot_accession": "Q9H972", "uniprot_release": "2026_03" } ], "pfam_id": "PF15394", "short_name": "DUF4616", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/resf1-c-pf15395.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15395", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/resf1-c-pf15395.yaml" } ], "pfam_ids": [ "PF15395" ], "protein_name": "Retroelement silencing factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNWNTKQENVPKPPPYSKTQSSILQHFLMTSTTSQSSFNYSPHNQEASQTSFNYSLHNQEACMYSGNSNSVSQPLLSGRNYITPQTQISVSNMPTRTIVASQSSMERVVSTNGKGPQQPNHNLQTVSSGIMQNVWLPSHTEATISHNPDGGTNMPYMHPPQNQLVTSDTYSMQLQMAPLHSGKVPMTHQGSQGLNHFIPDQLVDWTQYTSNELSYPEYRPPPKQYSYILPATTSLQVKNNQLPTYTQSLQSKHSVPLSSHQYAAEASKRLSALPYSCRYENQHVQNAQPVSKHLPMEVPQSSEVHSSEKKKDTYRGFKQQWQNPNEKVSIGQFSEVKINIKQPYSESVRPSGDGVQALVQNNQEKRKYTYNPNTNQVIDTNATKEKLVRDIKSLVEIKKKFSELARKIKINKSLLMAAGCSKTANTSYTEPIQHSEFSAKEMSAKNGNDCSMELLATCLSLWKNQPSKTTEENVPKPLEEKQCNTSRISTTVVGSANPTNEVHVKSLCSGVGNSQKMMSSSQTVLPVLIPSCESSGVAVGKGTELQIAVVSPLVLSDTNTLPGKDSVPEVLPETLYPVVKEGSVCSLQTQPTETVALPFDVIGAVASNNISAEIPLPVDKEKQHKPIQGDPDIADSSLGKHSPLGTEVLPKPMDSTIVSGPMLQIESICSLAEGDVSYNSQIAEIFNSVQTEPQKPSPNQVIDSQQEQVYDTTENKDFSLQKDKCVQCTDVPHEVPEQPEPLQPEEPASSEYVEANREATEESCREYTGRKESTAKDVCLPAAIQQDPHPRETDMFSKSDHSLPAINEINDESEPISYLHDQLSELLKEFPYGIETFNRHEVSLDQQKTHKIVENQTGGKTSNVSGDSTDQIKITVLNSEQIKELFPEDDQPCDKLAEPENKEIVAEVKSPCDSQIPREESHDLGMLDPEKDKIHCCALGWLSMVYEGVPQCHCSSTEKKEKDQCLDINSSKQGEQPCNSGITIFEINPVSNNSKTPLTQATEEGHFSAVHGEKTKASKTKDNREGQELACHFSAKCYKKDKKGNFKIRHDTSLKMEQKLKNISSKCDIPNPSKCNKIAAPEILHVTTSNSAKNMPFSKQASQESLQKKHTSQDLGPVKAPIELSSNTDPCRSNTSSVQSVSPEKKKLKFKAGGSRLKYFEKRKTDHVIIPDVEIKKKKYEKQEQNKNAGDTLKLCSILTESNERASVQEKTVPSPESSDPKGSSSKSTRVITVQEYLQRQKDKQITGNNASRNICVETVLCDSGHTKTSKHSAAVSWGKLVEGQSISAETAKELEHNSSSHGKDFKIHHSEASRTHSVSNNNKGKFDGKQPDKMFKNKTSMNNESNQMPLQVKEQRKQYLNRVAFKCTERESICLTKLDSASKKLSIEKKSGEYTSKTKDTDKPSMLEFKLCPDVLLKNTSTVDKQDCPGPGPEKEQAPVQVSGIKSTKEDWLKCIPTRTKMPESSQRDSADSRLSKRSLSADEFEILQNPVKESNIMFRTYKKMYLEKRSRSLGSSPVK", "sequence_length": 1521, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a418a6668915d8f67c079f311e953a22c53146e6df72ec73ab4d8500b3fa3263", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5DTW7.json", "taxon_id": "10090", "uniprot_accession": "Q5DTW7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/resf1-c-pf15395.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15395", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/resf1-c-pf15395.yaml" } ], "pfam_ids": [ "PF15395" ], "protein_name": "Retroelement silencing factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNWNEKPKSATLPPLYPKSQPPFLHQSLINQITTTSQSSFSYPGSNQEACMYPGNSNPISQPLLNIQNYPQQISVSDMHNGTVVASHTSVERITYANVNGPKQLTHNLQMSSGVTQNVWLNSPMRNPVHSHIGATVSHQTDFGANVPNMPALQSQLITSDTYSMQMQMIPSNSTRLPVAYQGNQGLNQSFSEQQVDWTQQCISKGLTYPDYRPPPKLYRYSPQSFLPDSTIQKQNFIPHTSLQVKNSQLLNSVLTLPSRQTSAVPSQQYATQTDKRPPPPPYNCRYGSQPLQSTQHITKHLSMEVPQSREMLSSEIRTSFQQQWQNPNENVSTIGNFTNLKVNTNSKQPFNSPIRSSVDGVQTLAQTNEEKIMDSCNPTSNQVLDTSVAKEKLVRDIKTLVEIKQKFSELARKIKINKDLLMAAGCIKMTNTSYSEPAQNSKLSLKQTAKIQSGPQITPVMPENAERQTPTVVESAETNKTQCMLNSDIQEVNCRRFNQVDSVLPNPVYSEKRPMPDSSHDVKVLTSKTSAVEMTQAVLNTQLSSENVTKVEQNSPAVCETISVPKSMSTEEYKSKIQNENMLLLALLSQARKTQKTVLKDANQTIQDSKPDSCEMNPNTQMTGNQLNLKNMETPSTSNVSGRVLDNSFCSGQESSTKGMPAKSDSSCSMEVLATCLSLWKKQPSDTAKEKECDKLRTNTTAVGISKPANIHVKSPCSVVGNSNSQNKISNPSQQTALSMVMHNYESSGINITKGTELQIAVVSPLVLSEVKTLSVKGITPAVLPETVYPVIKEGSVCSLQNQLAENAKATAALKVDVSGPVASTATSTKIFPLTQKEKQNESTNGNSEVTPNVNQGKHNKLESAIHSPMNDQQISQESRNSTVVSSDTLQIDNICSLVEGDTSYNSQIAKIFSSLPLKMVEPQKPSLPNQQGIGSREPEKQLDNTTENKDFGFQKDKPVQCTDVSHKICDQSKSEPPLESSFNNLETNRVILEKSSLEHATEKSTANDTCSSAAIQEDIYPQEIDASSNYTPQDPARNEIHSDKAPVLYLHDQLSELLKEFPYGIEAVNTREGSVGQQTTYQTSEDQTADKTSSDSKDPADQIQITILSSEQMKEIFPEQDDQPYVVDKLAEPQKEEPITEVVSQCDLQAPAAGQSRDSVILDSEKDDIHCCALGWLSMVYEGVPQCQCNSIKNSSSEEEKQKEQCSPLDTNSCKQGERTSDRDVTVVQFKSLVNNPKTPPDGKSHFPELQDDSRKDTPKTKHKSLPRTEQELVAGQFSSKCDKLNPLQNHKRKKLRFHEVTFHSSNKMTASYEQASQETRQKKHVTQNSRPLKTKTAFLPNKDVYKKHSSLGQSLSPEKIKLKLKSVSFKQKRKLDQGNVLDMEVKKKKHDKQEQKGSVGATFKLGDSLSNPNERAIVKEKMVSNTKSVDTKASSSKFSRILTPKEYLQRQKHKEALSNKASKKICVKNVPCDSEHMRPSKLAVQVESCGKSNEKHSSGVQTSKESLNGLTSHGKNLKIHHSQESKTYNILRNVKEKVGGKQPDKIWIDKTKLDKLTNISNEAQFSQMPPQVKDQKKLYLNRVGFKCTERESISLTKLESSPRKLHKDKRQENKHKTFLPVKGNTEKSNMLEFKLCPDILLKNTNSVEERKDVKPHPRKEQAPLQVSGIKSTKEDWLKFVATKKRTQKDSQERDNVNSRLSKRSFSADGFEMLQNPVKDSKEMFQTYKQMYLEKRSRSLGSSPVK", "sequence_length": 1747, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "56e5e5a75d374af471c32094bd77130131a534757ea5f4771203c0e17f390856", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9HCM1.json", "taxon_id": "9606", "uniprot_accession": "Q9HCM1", "uniprot_release": "2026_03" } ], "pfam_id": "PF15395", "short_name": "RESF1_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4618-pf15397.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15397", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4618-pf15397.yaml" } ], "pfam_ids": [ "PF15397" ], "protein_name": "Uncharacterized protein C20orf96", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAHVLQKPKHSGTHSIVQEFQVPDYVPWQQSKQETKPSTLPPVQQANSLHTSKMKTLTRVQPVFHFKPTTVVTSCQPKNPRELHRRRKLDPGKMHAKIWLMKTSLRSGRAALRELRSRENFLSKLNRELIETIQEMENSTTLHVRALLQQQDTLATIIDILEYSNKKRLQQLKSELQEWEEKKKCKMSYLEQQAEQLNAKIEKTQEEVNFLSTYMDHEYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAETQRPYEEALLQKMWESQDFLKCMQRFREIIDQFEENMPVLRAEVEELQAQTREPREVIFEDVLLRRPKCTPDMDVILNIPVEEPLPF", "sequence_length": 363, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "50ef48f2adee70eaf8c875bc8c2e2b0bf8abc244ea57443f31e58bc6cba0f466", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NUD7.json", "taxon_id": "9606", "uniprot_accession": "Q9NUD7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15397", "short_name": "DUF4618", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4619-pf15398.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4619-pf15398.yaml" } ], "pfam_ids": [ "PF15398" ], "protein_name": "Factor associated with metabolism and energy", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGLGHSKAHPRVIKVTPLQSQETETPSTGPVFFALNRNLEEESSFTRLQDQNRTREGQLPPLRETWYGRLPAVSRAMYLDIPLKHEETSIIKRHPPRRIQKLEPIDLPQAITSERLLCHQEGRTKSNTKQENEKKIQLPMYTSGKRQYLHKMKMLEMNHKRQEAQMELRKSLLSKAMLDMQKLKDHNGNKIAQSKPRSNGYDILTILPNENINRDPGNPQDEEFLDCHTENDYYVRKIGKMETWLREQEARGQLFWDSSSSDSDELEKDERRPQALVRTKTEKIPLYDDFYDSA", "sequence_length": 294, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "539616940bb47268dc543f1e335f10b50355f4eb7c90b79b4c76b752461f8ff5", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CPZ1.json", "taxon_id": "10090", "uniprot_accession": "Q9CPZ1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4619-pf15398.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4619-pf15398.yaml" } ], "pfam_ids": [ "PF15398" ], "protein_name": "Factor associated with metabolism and energy", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGLSHSKTHLRVIKVAPLQNKEVETPSAGRVDFAFNQNLEEKTSYSLARLQDQNKALEGQLPPLQENWYGRYSTASRDMYFDIPLEHRETSIIKRHPPQRLQKLEPIDLPRVITSGRLLSQREARTMHKAKQVLEKKMQTPMYTSENRQYLHKMQVLEMIRKRQEAQMELKKSLHGEARINKQSPRDHKAKKTLQSTPRNDDHDLLTMLPDEILNRGPGNSKNTEFLKHQAVNNYCPWKIGKMETWLHEQEAQGQLLWDSSSSDSDEQGKDEKKPRALVRTRTERIPLFDEFFDQE", "sequence_length": 296, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6f3197713294bb35237178b09641c7686f4fc907d1fe7f428d7a35ee405272a5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NVL8.json", "taxon_id": "9606", "uniprot_accession": "Q9NVL8", "uniprot_release": "2026_03" } ], "pfam_id": "PF15398", "short_name": "DUF4619", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4620-pf15399.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15399", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4620-pf15399.yaml" } ], "pfam_ids": [ "PF15399" ], "protein_name": "Uncharacterized protein C11orf21", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGRTWCGMWRRRRPGRRSAVPRWPHLSSQSGVEPPDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPATAHEPVDHPALHWLACCCCLSLPGQLPLAIRLGWDLDLEAGPSSGKLCPRARRWQPLPS", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e02326f1964c49b0a16583e219c47cb81169e979fc2193f4858a063ee69d5887", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9P2W6.json", "taxon_id": "9606", "uniprot_accession": "Q9P2W6", "uniprot_release": "2026_03" } ], "pfam_id": "PF15399", "short_name": "DUF4620", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15414", "short_name": "DUF4621", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15415", "short_name": "Mfa_like_2", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15416", "short_name": "DUF4623", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15417", "short_name": "DUF4624", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15418", "short_name": "DUF4625", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15425", "short_name": "DUF4627", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4628-pf15429.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15429", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4628-pf15429.yaml" } ], "pfam_ids": [ "PF15429" ], "protein_name": "Uncharacterized protein C1orf226", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFENLNTALTPKLQASRSFPHLSKPVAPGSAPLGSGEPGGPGLWVGSSQHLKNLGKAMGAKVNDFLRRKEPSSLGSVGVTEINKTAGAQLASGTDAAPEAWLEDERSVLQETFPRLDPPPPITRKRTPRALKTTQDMLISSQPVLSSLEYGTEPSPGQAQDSAPTAQPDVPADASQPEATMEREERGKVLPNGEVSLSVPDLIHKDSQDESKLKMTECRRASSPSLIERNGFKLSLSPISLAESWEDGSPPPQARTSSLDNEGPHPDLLSFE", "sequence_length": 272, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "04b495482e347b99abd551e14ed0e375d6f9cf5197ec405db487e4cb5405fed1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1L170.json", "taxon_id": "9606", "uniprot_accession": "A1L170", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4628-pf15429.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15429", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4628-pf15429.yaml" } ], "pfam_ids": [ "PF15429" ], "protein_name": "Uncharacterized protein C1orf226 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFENLNTALTPKLQSSRSFPHLSRPTAPSAAAQGSVEPGGPGLWVGSSQHLKSLGKAVGAKVNDFLRRKEPSSLGSVGTTEVNKTAGAQLAGGADGDDGRSALQEAFPRLDPPPPATRKRTPRALKTTQDMLISSQPVLSSLEYGTELSSGQPQVSSSAQPSPADASQPEATTEVVDRDDALPNGEVSVSVPDLIHKDGQDDPKLKVTECRRASSPGLMERNGLKLSLSPISLAESPEDGSPPPRARTSSVDNEGPHPDLLSFE", "sequence_length": 264, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "90f82a2898cb976c7bf2c3ae0245ae2679400bda4a11e01d0ad24beb98b0a19c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4IFJ0.json", "taxon_id": "9913", "uniprot_accession": "A4IFJ0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15429", "short_name": "DUF4628", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4629-ipr027898.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4629-ipr027898.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4629-pf15442.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15442", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4629-pf15442.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A6NCI8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15442" ], "protein_name": "Uncharacterized protein C2orf78", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1336ff0d354b1fa3b9998ba6b5be90db6b5a84ffd72ef34302ac2234bc8b114e", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MHWLASATQTSASIVSSSLLSAVDVSSSLTMSEYFQNTSLPGTANSRQFSLPVVSNAAFLTGSISNFSRASAPAISSAWLQPSASGTSFQPLMGSAYLYQHSSTTMLSGVTGQSHICTSAASYPGVFEWDSTASTVKKSSSLRDFTVTVIDQNTAVSSMSMTAQYYKTSDTNTMVPLYPSLSASLVQGTLTQIPNQQGHNLSLPCQIGSQVYYYNQGTLGPQLSCLQSYGSVSYTGYRASAHQPEMVMVLKEVQPTNVLPPVSTSGMYYSVSSQPITETSVQVMETSLGMDTSLGLQSPSQTFCLPQTPEFSKSFSSRNTQTLESNPSPELGDISITPVQSPTNLLTLSPAPSQEKNENENLDEIKTNLSKPLDVHQILIGNQDPPLLPVEIPDIHPLLACIDPLGQEEQPGSENANLRNKSLSLEDQGIFENGIESSSDLADITTWVEDTYLPPIFSSLQDLDQPESPSAKKAKDTSAIKVNQVQEKSCVIKGHSDQVRKNKHKASEPIQGAPKAKIQPKNPECLLEREVVVGSATVSNSASVNKAKHSSNKPHKAASSRISKTKSHGQEKTKGNRKNSSKKSEESKQSGKKVKVEEKQTIPNMKRKKNQPELSQKTLKKPRSSLGMHMLESVQVFHALGKKIDMKTGFSSSRTLGSSSNTQNRQPFPALKPWLDIQHEGKGPEKIQVKAQKLDGSAEKECTSPSHSELPPPGKVKLIPLPFLTLDQPQARHVSRRPNPLASRRPAVAYPARPDSTNSAQSNAVNPSRPAPTNTSLTGPATPAQPISAKATQPSSANPTQPTVPQSAASRPSAYKTSSCSSLQREPVSTAVTSLRSLPKPQNQFLIQDFSLQPRPWRKPTVPEPVMSTPITEEQRPEREAMKRKAQQERENAAKYTSLGKVQFFIERERDMEIAEYYGYTI", "sequence_length": 922, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "1336ff0d354b1fa3b9998ba6b5be90db6b5a84ffd72ef34302ac2234bc8b114e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/A6NCI8.json", "taxon_id": "9606", "uniprot_accession": "A6NCI8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4629-ipr027898.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027898", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4629-ipr027898.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4629-pf15442.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15442", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4629-pf15442.yaml" } ], "pfam_ids": [ "PF15442" ], "protein_name": "Uncharacterized protein C2orf78 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSENSQSSPFFGTESTLHPSLPLLSNSIQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMGNAYLNPHAGTTMLTVLTEQGQISTSTPSYPGALKWDCTGSTHGREDALQEFNMKLIDQDTTLSSLAVTNQSDKILDPNVIVPFHPTLSSSFVQITPSQMPNQGYSLAPSYQEGSQVYYYEHNNLGPLIAGEFGQCLKAHGSVSYPGSQTSVLQPEMVMVLKEIQPRNIQMPLFTSAFSYSTSAQSMPDNGLPVVQMETSLGLPPSGQTHCQLQSPELCNTCVQVSQIRPPAVNGDKALTAPIHSPSEFLALPPAPSLEQPENKTMPEIKEGTKENQDRPVLTLEHPDLQQPLHCTDTESLRQKPDSDNAHLGCICMGPKELVGLENENGSSFNFKDITRLEADIQLPQLLNTLTDIDQDQSCETWTVTSGPSDQVRKNKHKSFELLEGAPQAKFQHWDLVEGEGAGGVAGASERAIDNMAKQPEGKAPKGPPSKNRKARKQEQERPSGPQNKSKKTEELKQSRNTAKAEENLSIPKTKRKRNPPELSQNSFKKPRTNLAMHMLESVQVFHPLGKKTEKKTGISSFRGLRTFTINKDPGPGSGTVTTTVLNMPCEGQFPPKSPGKVQRAESSIDKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRTTTVQPHSHSAQPTTLRPAQPPPVSSSLIASAKPAPPISSSSTGPNVTNPNQSSAVPHLVTSRPVPYRASSHTSFQRELVSAARNKVPSPPKPQTKYLLHDFSRQPIPWKKVDILGPVVSQPITKEQRPEREAMKRQAQQERENAVKNPSTGKLQIFLQRERDMEISQYYGYAM", "sequence_length": 857, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c02821e7e61cebb970f99b2fada42eafd4e830c012fc033cb6535ab223cc1b0e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3V0A6.json", "taxon_id": "10090", "uniprot_accession": "Q3V0A6", "uniprot_release": "2026_03" } ], "pfam_id": "PF15442", "short_name": "DUF4629", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c2orf72-like-c-terminal-ipr027868.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027868", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c2orf72-like-c-terminal-ipr027868.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4630-pf15443.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15443", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4630-pf15443.yaml" } ], "pfam_ids": [ "PF15443" ], "protein_name": "Uncharacterized protein C2orf72", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERELEALAARLARPAEPPFQALVEAAGGRGQVLLVGELWEREQSRALLRDFARAVFPPEPGAAKPGGAAAEGAGPGAARGAQRAARAAGAAGAAAAAARAIRSPLVFVLCRASSLAAREPRRRLREMLRDVRGRRRAGAALVGVLVAEAGPEDAVAPGLRLLEALLRAVFGRQAGGPVQAAAYCPGLPASCLAVQAAACRALQAAGAGQPVEGAWERPGLPGLLACFSWGPWSRRKNQDVAACRSSAQEDFQEPEEELPLTAIFPNGDCDDLGRGSKACDGVVHTPAEPTGDSR", "sequence_length": 295, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6a523549f0cc4494c1ee5200d9090673537dddf559bbaa88990ed46e30a72949", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A6NCS6.json", "taxon_id": "9606", "uniprot_accession": "A6NCS6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c2orf72-like-c-terminal-ipr027868.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027868", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c2orf72-like-c-terminal-ipr027868.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4630-pf15443.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15443", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4630-pf15443.yaml" } ], "pfam_ids": [ "PF15443" ], "protein_name": "Uncharacterized protein C2orf72 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESELEALAPRPASPAEPPFQALVEAAGGRGQVLLVGELWEREQSRALLRDFAGAVFPPESAPGKPGCAEAESAGTAAATESHGAPGAKAERAIRSPLVFVLCRVGSLTSRESRRRLREMLRDVRDRRCEGAALVGVLVADTGADDARAPELQLLETLLRTVFGRQVGGPVQAAAFRPGCPASSLAVQEAACRALQAAGPGRPEGAWERPARTGLLTCFSWGPRRQRKNRGVTSSQGPAQEHLQFSEEELALTPVFPNGDCEDRGNGSRAQDGGVHIPPDPPEDTR", "sequence_length": 286, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1f82d82a54aa83b186ad26bd07f190a3f0d74ee2e22e161c87ea60ee8a008fa6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CYS6.json", "taxon_id": "10090", "uniprot_accession": "Q9CYS6", "uniprot_release": "2026_03" } ], "pfam_id": "PF15443", "short_name": "DUF4630", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccdc154-pf15450.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15450", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccdc154-pf15450.yaml" } ], "pfam_ids": [ "PF15450" ], "protein_name": "Coiled-coil domain-containing protein 154", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSELADSGPSGASAPSQLRAVTLEDLGLLLAGGLASPEPLSLEELSERYESSHPTSTASVPEQDTAKHWNQLEQWVVELQAEVACLREHKQRCERATRSLLRELLQVRARVQLQGSELRQLQQEARPAAQAPEKEAPEFSGLQNQMQALDKRLVEVREALTRLRRRQVQQEAERRGAEQEAGLRLAKLTDLLQQEEQGREVACGALQKNQEDSSRRVDLEVARMQAQVTKLGEEVSLRFLKREAKLCGFLQKSFLALEKRMKASESSRLKLEGSLRGELESRWEKLRGLMEERLRALQGQHEESHLLEQCQGLDAAVAQLTKFVQQNQASLNRVLLAEEKAWDAKGRLEESRAGELAAYVQENLEAAQLAGELARQEMHGELVLLREKSRALEASVAQLAGQLKELSGHLPALSSRLDLQEQMLGLRLSEAKTEWEGAERKSLEDLARWRKEVTEHLRGVREKVDGLPQQIESVSDKCLLHKSDSDLRISAEGKAREFKVGALRQELATLLSSVQLLKEDNPGRKIAEMQGKLATFQNQIMKLENCVQANKTIQNLRFNTEARLRTQEMATLWESVLRLWSEEGPRTPLGSWKALPSLVRPRVFIKDMAPGKVVPMNCWGVYQAVRWLRWKASLIKLRALRRPGGVLEKPHSQEQVQQLTPSLFIQK", "sequence_length": 667, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "40f3b98af83926377fc49614efbaa729d47d807bd3a0f17973843ad8db915d61", "sequence_version": 5, "source_url": "https://rest.uniprot.org/uniprotkb/A6NI56.json", "taxon_id": "9606", "uniprot_accession": "A6NI56", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/tooth-eruption-go0044691.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044691", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/tooth-eruption-go0044691.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ccdc154-pf15450.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15450", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ccdc154-pf15450.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q6RUT8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15450" ], "protein_name": "Coiled-coil domain-containing protein 154", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "8a7c02eb500565bd057d879ef4fcb0aceec87203e4565648559c77a06e852737", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSEPADGPSLRLSPSHLSTVTLEDLELLLTEGLVSAETSERDECSGRASGSLVPEQDTSKLWKQLEQWVAELQAEVVRLRGHKERCEHATLGLLRELLQVRARVQMQASELRQLRQVVQQAAWSPEKEELELSGPQSQNQMQTLDKRLVEVREALTHIRRKQALQDSERKHSEQEINLRLTNLTGMLSQEEQGREAACSALQKNQEDTSQKVDLGLAKMQAQMTKLNEEMSLRFLKREAKLCSFLQKSFLALEQRMKSSESTRQIAESSLREELESRWQKLHELTEERLRALRAQREEEEGHLLEQCRGLDKAVVYLTKFVRQNQVSLNRVLMAEQKAREAKVSLEETQAGELASYVHENLEAVQMAGKLAQQETQDALELLQEKSQVLEGSVAGLDQQLKDLSDHCLALSWRLDLQEQTLGLKLSQKQAAWEGMERESLKDLVQWLKEVTAHLEEVQEKVNSLPQQIESISNKCVIHKSEVDVKISAEGKAREFEVETVRQELAALLMSVQLLKEENPGRKIAEIQGQLATFQKQMIKLENSLQANKTIQNLKFNNETKLRTEEIATLRESMLRLWSEEGPWPLTLGSKRVFMSLVRQRFFIKDVALDAMVSVNSWGVYQAVRWLRWKRFLLNLVAQKRPGVTSAMTQWKPAYEVTSLTVFQK", "sequence_length": 664, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "8a7c02eb500565bd057d879ef4fcb0aceec87203e4565648559c77a06e852737", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6RUT8.json", "taxon_id": "10090", "uniprot_accession": "Q6RUT8", "uniprot_release": "2026_03" } ], "pfam_id": "PF15450", "short_name": "CCDC154", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4632-ipr027952.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027952", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4632-ipr027952.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4632-pf15451.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15451", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4632-pf15451.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A6NIN4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF13445", "PF15451" ], "protein_name": "RING finger protein 227", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "e030d2d948b6626cc497392701b2c5b3167c2496326466de44739d9653e0edb8", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQLLVRVPSLPERGELDCNICYRPFNLGCRAPRRLPGTARARCGHTICTACLRELAARGDGGGAAARVVRLRRVVTCPFCRAPSQLPRGGLTEMALDSDLWSRLEEKARAKCERDEAGNPAKESSDADGEAEEEGESEKGAGPRSAGWRALRRLWDRVLGPARRWRRPLPSNVLYCAEIKDIGHLTRCTL", "sequence_length": 190, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "e030d2d948b6626cc497392701b2c5b3167c2496326466de44739d9653e0edb8", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/A6NIN4.json", "taxon_id": "9606", "uniprot_accession": "A6NIN4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4632-ipr027952.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027952", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4632-ipr027952.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4632-pf15451.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15451", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4632-pf15451.yaml" } ], "pfam_ids": [ "PF14634", "PF15451" ], "protein_name": "RING finger protein 227", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQLLMRVPSLPELGELDCNICFRPYNLGARAPRRLPGTARARCGHTLCTACLRELAARGDGSRTAARVVRLRRAVTCPFCRAPSPLPRGGVTEIALDPVLWSRLEEKARAEREGDPMGSPAKDSGEDGEDDDGEAESEKGAGPPSAGWRALRRILDRVLAPARRLRRPLPSNVLYCPEVKDIAHMTRCTL", "sequence_length": 190, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "daa9d984be2479b15870cc24bf058985de190b5ac90f1e7214a2badef1afa0ea", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DCB3.json", "taxon_id": "10090", "uniprot_accession": "Q9DCB3", "uniprot_release": "2026_03" } ], "pfam_id": "PF15451", "short_name": "DUF4632", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4633-pf15464.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15464", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4633-pf15464.yaml" } ], "pfam_ids": [ "PF15464" ], "protein_name": "Uncharacterized protein C11orf86", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTGLRSQSLREPRPSYGKLQEPWGRPQEGQLRRALSLRQGQEKSRSQGLERGTEGPDATAQERVPGSLGDTEQLIQAQRRGSRWWLRRYQQVRRRWESFVAIFPSVTLSQPASP", "sequence_length": 115, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0ebbe279a7e140c1da87f09c95cf019ecbee5b8bd783b8b71b261dd4b7f4b376", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A6NJI1.json", "taxon_id": "9606", "uniprot_accession": "A6NJI1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4633-pf15464.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15464", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4633-pf15464.yaml" } ], "pfam_ids": [ "PF15464" ], "protein_name": "Uncharacterized protein C11orf86 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTGLRSQSLRGPRPSYGKLQEPWGRPTEGRLRRALSLRQGREKSRSSDGGPERLDTLGQEWLPGSLGDTEQLIQAEQEGSQRWLRQYQQKIRRRWESFVTSFPNVTLSRSASPQPPLGTTS", "sequence_length": 122, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "15507c87ca87e32fbfbcc12c9724a62268528b508785a9267e11c42bf0a51fc7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2KIL8.json", "taxon_id": "9913", "uniprot_accession": "Q2KIL8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4633-pf15464.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15464", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4633-pf15464.yaml" } ], "pfam_ids": [ "PF15464" ], "protein_name": "Uncharacterized protein C11orf86 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTSLRSQSFREPRPSYGRLHESQGRSLDGRLHRALSLRLGREKSRSQVPDGTEGLEVSVQERLPGTLGDKEQLIQGQRGGGSRRWLRQYQQHVKRRWRSFVASFPSVTLSQPASPETLLDTNN", "sequence_length": 124, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9518fa867f65fba36567bbe36f55bfd40c0cb5f56b03f78ab95c6d712a0fb8e5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VC23.json", "taxon_id": "10090", "uniprot_accession": "Q8VC23", "uniprot_release": "2026_03" } ], "pfam_id": "PF15464", "short_name": "DUF4633", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4634-pf15465.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15465", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4634-pf15465.yaml" } ], "pfam_ids": [ "PF15465" ], "protein_name": "Uncharacterized protein C1orf54 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVLFVAILAVPLILGQEYEDGEELEEDEYYQVIYYYTITPSYDEFGVNFTVDYSMFESENTVNRLDEKVEASETTISYETDRADHQKPVIEKPVTMEPQSPDLNDAVSGLQSPGPLLLSWALIQGVMYFL", "sequence_length": 131, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6ac172f5d7a366b14e47f84c5dd926b017b75c68a7d49b957ab5e45146080232", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q148C7.json", "taxon_id": "9913", "uniprot_accession": "Q148C7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4634-pf15465.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15465", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4634-pf15465.yaml" } ], "pfam_ids": [ "PF15465" ], "protein_name": "Uncharacterized protein C1orf54 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVLFIALLVAPLILGQEYDHEEQLEEGDYYQVAYYYYTVTPNYDDFSVNFTVDYSVFESEDRLNRLNKEVTTTEAVETTASSYSLHTELMDPQNPVTTKPVTTEPVTTEPVTTEPQSPNQNDAMSTLQSPVSCFLLWTLLQGGVHFM", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5db5ef42be87a97580e9cc26bdb3993271758e2ff3f0b663146e23e3df802cd4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R2K8.json", "taxon_id": "10090", "uniprot_accession": "Q8R2K8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4634-pf15465.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15465", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4634-pf15465.yaml" } ], "pfam_ids": [ "PF15465" ], "protein_name": "Uncharacterized protein C1orf54", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVLFVAIFAVPLILGQEYEDEERLGEDEYYQVVYYYTVTPSYDDFSADFTIDYSIFESEDRLNRLDKDITEAIETTISLETARADHPKPVTVKPVTTEPSPDLNDAVSSLRSPIPLLLSCAFVQVGMYFM", "sequence_length": 131, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "29b94964e6367fa0818c0f04b0a9b5c9c1c54d45eb52ba33b4a70030a015658c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WWF1.json", "taxon_id": "9606", "uniprot_accession": "Q8WWF1", "uniprot_release": "2026_03" } ], "pfam_id": "PF15465", "short_name": "DUF4634", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4635-pf15466.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15466", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4635-pf15466.yaml" } ], "pfam_ids": [ "PF15466" ], "protein_name": "Small integral membrane protein 23", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATQQVDSRRQVAAEQVAAQLLERRRGSHCDDEKQTLLALLILVLYLSTEIWGSSWEVSERIRECNYYQNLAVPQGLEYQTNEPSEEPIKTIRNWLKEKLHVFSEKLEEEVQQLEQLAWDLELWLDALLGEPHQEEHCSTYKSHLWEWAWALGREHKGGEGLLEISLSGAEL", "sequence_length": 172, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0c265b0de2d8128be92d398044bc6b1afeca88e8db6d26dbf4cff17158d7945e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/A6NLE4.json", "taxon_id": "9606", "uniprot_accession": "A6NLE4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4635-pf15466.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15466", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4635-pf15466.yaml" } ], "pfam_ids": [ "PF15466" ], "protein_name": "Small integral membrane protein 23", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIQKTGCRGREAAEVVEQRRRSHHCDDRKQTLLALLILVLYLGMGISGSSWEVSGQTKDCNHFQNPVTPQGFEYQTKEPAEEPLRTLRKWLKINLHGFLEKLEKEVRELEQLVRDLEFWLDALLGDLRPEDPCFT", "sequence_length": 136, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4241cadac8b342afd93b9c25eaac249a02ea4472affce901bc44294f4d1b1a76", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DAL0.json", "taxon_id": "10090", "uniprot_accession": "Q9DAL0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15466", "short_name": "DUF4635", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Macaca fascicularis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4636-pf15468.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15468", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4636-pf15468.yaml" } ], "pfam_ids": [ "PF15468" ], "protein_name": "Serine-rich single-pass membrane protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDLFSLFWEVDPPPIPLNCAIPNQDYECRKDDSCGTIGNFLLWYFVIVFVLMFFSRASVWMSEDKKDEGSGTSTSVRKASKETSYKWQSKDGAWDPSQTMKKPKQNQLTPVTNSEVALVNAYLEQRRARRQSQFNEVNQNQHDSDTTECGSEESNSEASSWKESESEHHPSPDSIKRRKMAQRQRNLGSYQMSERHCLHCKAMRTNEWLVHHSQQKASVTPPMKGDSPEESSISDINTKFSKF", "sequence_length": 244, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "21b588e5a4bdfcdcc97d245d81a5ce7409ea98606b7a32c45a27428676bd4bf2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4R309.json", "taxon_id": "9541", "uniprot_accession": "Q4R309", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4636-pf15468.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15468", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4636-pf15468.yaml" } ], "pfam_ids": [ "PF15468" ], "protein_name": "Serine-rich single-pass membrane protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGDLFSLFWEVDPPPIPVNCAIPNQDYECWKDDSCGTIGSFLLWYFVIVFVLMFFSRASVWMSEDKKDEGSGTSTSVRKASKETSCKRQSKDSAWDPSQTMKKPKQNQLTPVTNSEVALVNAYPEQRRARRQSQFNEVNQNQHDSDTTEYGSEESNSEASSWKESESEHHPSPDSIKRRKMAQRQRNLGSYQMSERHCLHCKALRTNEWLAHHSRQKPSVTPPMKRDSQEESSISDINKKFSKF", "sequence_length": 244, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c3ccb46311eb55fc9fadf3d3b8e8bd5e6ad57e2f5e340983fad3a501bbcf58e9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WWF3.json", "taxon_id": "9606", "uniprot_accession": "Q8WWF3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4636-pf15468.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15468", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4636-pf15468.yaml" } ], "pfam_ids": [ "PF15468" ], "protein_name": "Serine-rich single-pass membrane protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGHLLSLFWEVDPPPIPLGFTMPSQDAECRKDDSCGTIGSFLLWYFIIILILMFFSRASVWMSESKQDEDSGTSASLSKASKETSCKRQNREGSWDSSLVMKKPKQNQVSTVTDSEVALVSAYLEQRRVRRHSQFLRVNQIQQDSDTTECDSEESNSGASSWKESESDHHLSPANIKRRKSVSRQRDMENYEVRQRPCLHCKAMRTREWLTRHFPPSASVTTPMKGEIQEENLTPGTNTKFSKF", "sequence_length": 244, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "54b2214d5ac7c66d31f9f0b6cfe63fc14afde0a0b4eab4e3da037da7cceb7a7e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D9Y8.json", "taxon_id": "10090", "uniprot_accession": "Q9D9Y8", "uniprot_release": "2026_03" } ], "pfam_id": "PF15468", "short_name": "DUF4636", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4637-ipr029174.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4637-ipr029174.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4637-pf15470.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15470", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4637-pf15470.yaml" } ], "pfam_ids": [ "PF15470" ], "protein_name": "Uncharacterized protein C17orf50 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKHGVKTPLWRKEVEDPEAREEDLEDDSSSSSSSSSVEERSDPESATETEEDSRDAEEREARSVSYSPLRQESSSQQVALLRRSDSSFWGWLSPFALLGGLAAPADRKRGAPEEPCVLETRRRPPRRGGCARCEILFCKKCKTLHSHPAYVEHCILEHPDLGKAEATGNSELIDSQPPSPQCSKLFYL", "sequence_length": 189, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "26861a21c80a261faddc620a0ae5eabb93dba646f67429623924e883971b1084", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C1R3.json", "taxon_id": "10090", "uniprot_accession": "Q8C1R3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4637-ipr029174.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4637-ipr029174.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4637-pf15470.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15470", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4637-pf15470.yaml" } ], "pfam_ids": [ "PF15470" ], "protein_name": "Uncharacterized protein C17orf50", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKHGVKTPLWKKETEELRAEDAEQEEGKEGSEDEDEDNQRPLEDSATEGEEPPRVAEEGEGRERRSVSYCPLRQESSTQQVALLRRADSGFWGWLGPLALLGGLTAPTDRKRSLPEEPCVLEIRRRPPRRGGCACCELLFCKKCRSLHSHPAYVAHCVLDHPDLGKAGAAGNS", "sequence_length": 174, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "72bee45b95ba36494c0f07f80017cae762c9f49ff892b0a706f60e3b3f0cfaf6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WW18.json", "taxon_id": "9606", "uniprot_accession": "Q8WW18", "uniprot_release": "2026_03" } ], "pfam_id": "PF15470", "short_name": "DUF4637", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4638-pf15472.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15472", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4638-pf15472.yaml" } ], "pfam_ids": [ "PF15472" ], "protein_name": "Uncharacterized protein C16orf78", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEQQMDLKDLMPTKRKYMWKTAEDRRMSDLTCVLEWLERRQGKKKQAPEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDAASYRSLYGVEQKGKHLSMVPGSYIKDGPKKSDTDIKDAVDPESTQRPNPFRRQSIVLDPMLQEGTFNSQRATFIRDWSNKMPDMAYERKLKSLMEKSTEPKMETMRMLKPEEVLSCRYLRLSKENIRTLLKLCKDAGMNVDIHPHMVEEDIDAKKVFTGIPSMAL", "sequence_length": 265, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cdeb3feea98dead8af9ce3a2d7b915789c9fef189c188b4a438feaa83fee1e26", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WTQ4.json", "taxon_id": "9606", "uniprot_accession": "Q8WTQ4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15472", "short_name": "DUF4638", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4639-pf15479.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15479", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4639-pf15479.yaml" } ], "pfam_ids": [ "PF15479" ], "protein_name": "Uncharacterized protein C2orf81", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAHEGSRQVRDRGVTRSKAEKVRPPTVPVPQVDIVPGRLSEAEWMALTALEEGEDVVGDILADLLARVMDSAFKVYLTQQCIPFTISQAREAMLQITEWRFLARDEGESAVAEDPTWGEDEEPSACTTDSWAQGSVPVLHASTSEGLENFQGEDPGGVDRIPLGRSWMGRGSQEQMESWEPSPQLRVTSAPPPTSELFQEAGPGGPVEEADGQSRGLSSAGSLSASFQLSVEEAPADDADPSLDPYLVASPQASTGRGHPLGFHLSLEDLYCCMPQLDAAGDRLELRSEGVPCIASGVLVSYPSVGGATRPSASCQQQRAGHSDVRLSAHHHRMRRKAAVKRLDPARLPCHWVRPLAEVLVPDSQTRPLEAYRGRQRGEKTKARAEPQALGPGTRVSPAAFFPLRPGIPFRDLDSGPALLFPTLNLGLSSPSLESKLPLPNSRIRFLTTHPVLPDVARSRSPKLWPSVRWPSGWEGKAELLGELWAGRTRVPPQGLELADREGQDPGRWPRTTPPVLEATSQVMWKPVLLPEALKLAPGVSMWNRSTQVLLSSGVPEQEDKEGSTFPPVEQHPIQTGAPKPR", "sequence_length": 582, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4c4338001ab70bf1c37de60b0b57e404983f40c1f81a2e13fbfee72068e196fe", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/A6NN90.json", "taxon_id": "9606", "uniprot_accession": "A6NN90", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4639-pf15479.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15479", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4639-pf15479.yaml" } ], "pfam_ids": [ "PF15479" ], "protein_name": "Uncharacterized protein C2orf81 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSHEGSRQARDRGVTRSKAEKARPPTQPVPQVDIVPGRLNEAEWIAFMSLEEGEDIVGDILADLVTRVMECAFKVYLTQQCVPFTISQAREAMLQITEWRFLARDEGESAVAEDPTWGEDEEPLACTTDAWAQGSVPVLHAPAPVGVEEHFHNEEPGNPDQFLIDSSWLGRESQEPTQSSEPSAEPRVNPRPTPAMEVFEEAEPRDALEVPHRQESILTVPSKESLRPTLEVQTVHSPQLSPKLSQVVSLQTCERTGSSFGSHLSLQDLYHCVPQPDAAGDRLNLKNKGQLCRSSIGSADRSLLSVPTPDGPSPFLQPGGMERRPSHKTPTMRLDPSRLPRHWVRPVAEVLIPDLEARPLEIYRVRPRKSQVGASASESQALGSRTHSKLQVSIPRFPLKRCATFRSSGPDPTLNLAQSSPSFGSNLPFLSPGFRFLARNLVPPDVASAPSPKLWPRAKWPSGWEREAEQLGELWAGRTRVPPQGQEPVEDSVSEDSGWPLAVPQVLEATSQVLWKPMVISENMKLVPGVSMWNRGTQELLNPAAIQEEAEEGTPQAPEQQPIQTGVSKPQVIMKQLRNETPKAWLLPTKPVPHSGS", "sequence_length": 597, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f12394398dd48e3a4972b0ea62ef970b97a02f451bf504884601afc4896b37b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6AXP4.json", "taxon_id": "10116", "uniprot_accession": "Q6AXP4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4639-pf15479.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15479", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4639-pf15479.yaml" } ], "pfam_ids": [ "PF15479" ], "protein_name": "Uncharacterized protein C2orf81 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSHEGSRQARDRGVTRSKAEKARPPTQPVPQVDIVPGRLNEAEWIAFMSLEEGEDVVGDILADLMTRVMECAFKVYLTQQCVPFTISQAREAMLQITEWRFLARDEGESAVAEDPTWGEDEEPLACTTDSWAQGSVPVLHTPAPVCVEEQFHNEEPGNPDQFLLGSSWDKESQKPTQPSEPSAEPKVTPRPTATLEAFEEAEPGDALEVPHGQEGSHMLAVPSKESLRSTAEGERVYSPQSSLKQPQVVRLQASEKESSFGSHLSLEDLYLCMPQPDAAGDRLSLQSKGQLHSSPIGSESHLGALTPAEPSAFQEPEVLGERPKHKTTTLRMDSSRLPRHWVRPVAEVLIPDLEVHPLEIYRGRPRRSQAGTATSACESQALSSRAPSKPHVSSPRFPLQRCATFRALGPDPSLNLAQTSPSFGSNVPFLSPGFRFLPRNPIPPDVASTPTPKLWPLAKWPSGWEREAEQLGELWAGRTRVPPQGQEPVEVTPLEEDSGWPLAAPQVLEATSQVLWKPMVISETMKLVPGVSMWNRGTQELLNPAVIRKEAEEGTPQAPEQQPIQTGVSKPQVIMKQIRNETPKAWLLPTKPVPHSGS", "sequence_length": 598, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "27ecfd35dde8185d96a456d43169c67f4cec424e201b8ebd5e5264e8938e13f5", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DAQ4.json", "taxon_id": "10090", "uniprot_accession": "Q9DAQ4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15479", "short_name": "DUF4639", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4640-pf15480.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4640-pf15480.yaml" } ], "pfam_ids": [ "PF15480" ], "protein_name": "Uncharacterized protein C12orf71", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAYSSSNSDIEDDSSKSNSNLSLSVGYFPCEDTPCEDTTSWEDAPSKGPSIHFLPPVQGAWGTERIGRRMKRQDQIQDEPEQFCKLSIFLAWDVDIGSDNTDSRANRLLNGDNLWIDKLPKERTKLSVGKLNNLVQEFQIFLENLKDDDAVFPETAQQDFQLSSGSPPEMVQMISQATASQRTSAPEISSILSEQPEKDDTPSHTQAQCCLNFGWAFSWLRQRILPSLLRRDHPVNATKSPHRSAPTKRLFHRGKRIQPQETLELGHPI", "sequence_length": 269, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "547626546f6be14d8928b5101659955d33f31dce2d44ac25ccc07771b1e414e5", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/A8MTZ7.json", "taxon_id": "9606", "uniprot_accession": "A8MTZ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4640-pf15480.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4640-pf15480.yaml" } ], "pfam_ids": [ "PF15480" ], "protein_name": "Uncharacterized protein C12orf71 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQELAAPLSCGQPPGQNITETTTDPWDEGDLRFEPSNSMVHSFSSSSESNLSLSVGYFPCEDTLSCEDTLSCEDSSSEGPSMHFVPPIQGSWRTENTGRLLARRDQIQDDPEQFCKLSITLAWDVDMASNNSDSTTNCDLSGDNKDKHPKEKTQLTLSKLDGLVQKLEKFLENQKDDKDDDSVFPESAQEEDSQLPSSSLPGMAQVSHQEYGSCQDLAKFNPLENEDVNQFPQIHPRLQNQELAKIISKATGSQGTDIAEISSVLPGPPEKEDTHSSTGALSCLNFRWVFRWLRPQVRSSLLGREDPREANERPRELARKKRFSYRSKRIQPQESFELGHPIPPDF", "sequence_length": 347, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1320afb4d14ba3417dd10c59052f36410f91e59ee723be23b02916c2d49ce4c0", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q32LI3.json", "taxon_id": "9913", "uniprot_accession": "Q32LI3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4640-pf15480.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4640-pf15480.yaml" } ], "pfam_ids": [ "PF15480" ], "protein_name": "Uncharacterized protein C12orf71 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTSPSSSDYSSTEDSIYECKSNQSASVGYYPSENTFSYEDLVSREETASVDSLVHFLPPVQSTWRTESLRRLFRKRDQVEHDPEQFSKLSITLAWDIDVDSNHADSLANLDLNAHSQWMDKWPEDKTKLTPCKLYNLVQKLETFLGKEKGGQHDGCVLPESTQKEDVHLNSTTPPHTAQVSPKERDVCQDLSKQRSLENEDICQVLEDPPRLLKDEVVQEIRQASESSLETSSVSSPQPEGASRSHNIFCMNFRWVFQWLRTQIFSRWRRQRPSQATNTWHQKAVRNIHSLRSNRIQPQE", "sequence_length": 301, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "637ea56065e47ff1e705e3b9744102b828d57e58aa3f6e102aa3ea1a32171e54", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q80W69.json", "taxon_id": "10090", "uniprot_accession": "Q80W69", "uniprot_release": "2026_03" } ], "pfam_id": "PF15480", "short_name": "DUF4640", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/duf4641-pf15483.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15483", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/duf4641-pf15483.yaml" } ], "pfam_ids": [ "PF15483" ], "protein_name": "Uncharacterized protein CXorf49C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSTDEVSVCRAGLGPEGGEQAGAHTASPGAPRGDGHGRDLNFGGQRSGKGKGKGESGFTDPESFSFESESELIEQGRVVLWGQEGRPGTPVDDQAGGGDYSFYLADEPATIMPPSSVQGHPSPEGATAKGSTDIWADLEVGPSWRGALSPSPGEWQQASAGPLHLSVPGPGPAWENPERGSKSRLSFQVDPQQPSAEGPAGLNTDDSDSADESSDLPVIRVIISTKEGSQAKPGSPKKPGDTCGRRSFHRRESYLQVQGPLLISPPRRLTPVVERPAVGELDVPSLKKMQSMVWGKRGVRPSCSGAAVRGPLPRGTLGRKVAQEKKSLEGAPELALRGAFPAWGQRLSAVPPDPASFPPVSGVGLLGKSVRPKEPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTQKPELISLSVRRGEYSSGDPNIRAPQVLGTSQPSAFTLRRLVPRCHASSGDWQPPVHPPRPERQQQPPGAQGCPRCILLQREIEDLRDQLAAMQFLTDKFQDL", "sequence_length": 518, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "36c336f1ee4f8845098eb9c38b849614ca5e4712a349f6cd330457d878b0ec48", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A0A1B0GWI6.json", "taxon_id": "9606", "uniprot_accession": "A0A1B0GWI6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/duf4641-pf15483.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15483", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/duf4641-pf15483.yaml" } ], "pfam_ids": [ "PF15483" ], "protein_name": "Uncharacterized protein CXorf49 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSSDDEVLVWGPGFGSECGEQTSGLEAGSTAPRGPGPDPGPEPGAPQSGEGEGGDGFPDPEGFESEREVLEAGGPVLLGCEGRPGSPADDTGYVVQLSDESVAAILRQLADLDLLGIRRHMSPESHGVGDVSPLRDVEARPGSRGAAAQRCGEAARAEAGPRWVGRPRAGRAWGNPKRSTNVAVDRQWPPSVSPARLFSDSESSDECSEIQPMRVSIYPKDGGQAKLNSPKDPRDTPRHSNVQGRETLPNVPGTCLSSAPRGLISVVERQGKQGDAEQETISPPKKIQSVLWGKGGSLPSFPGVAAAAATAAAATGRLPRPSPRRKRVQEKKSLGGVSKPALGRTFPSWGRGISATPLDPATFPPISGIPLLGRSQKYASVPWGAKESKHTGAGKKSVARRARELVAATAVSGEDNDPNRDPVPKGQLATDRPWPSCPRVHHGEPSTANLSIRGGQDSGNSKPVAMNKGEVMPRGPGPSGDQKPADHHPRLKRRQQPPRRQGCPRCLVLQKEIDDLKEQLASMQYLAEKFRIL", "sequence_length": 534, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d821af16a206522b04cc3d376ca82e189de6a79041badc6eabc146009c584914", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5PKC7.json", "taxon_id": "9913", "uniprot_accession": "A5PKC7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/duf4641-pf15483.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15483", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/duf4641-pf15483.yaml" } ], "pfam_ids": [ "PF15483" ], "protein_name": "Uncharacterized protein CXorf49", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSPDKVSVCGAGFDLEGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKSRWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPGAQGCPRCIWLQREIEDLTQQLAAMQFLTDKFQDL", "sequence_length": 514, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "05ecded9e2d18af32a820123c1cdefbedf708e4c65ca07b2274f9ade67834d0e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/A8MYA2.json", "taxon_id": "9606", "uniprot_accession": "A8MYA2", "uniprot_release": "2026_03" } ], "pfam_id": "PF15483", "short_name": "DUF4641", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4642-pf15484.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15484", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4642-pf15484.yaml" } ], "pfam_ids": [ "PF15484" ], "protein_name": "Uncharacterized protein C2orf74", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFETTAITFFIILLICLICILLLLVVFLYKCFQGRKGKETKKVPCTDANGGVDCAAAKVVTSNPEDHERILMQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEYPTPRSYTREHKERK", "sequence_length": 187, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99b09d26bc31896b59e005ab1d1cf1783f8a615073f096506f2b5c84156a85dc", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/A8MZ97.json", "taxon_id": "9606", "uniprot_accession": "A8MZ97", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4642-pf15484.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15484", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4642-pf15484.yaml" } ], "pfam_ids": [ "PF15484" ], "protein_name": "Uncharacterized protein C2orf74 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFTQSDTGKIEEIFTTNTMAFETTAITFFFILLICFICILLLLAIFLYKCYRGHNHEEPLKTLCTGEGCVAANAEMDKPEDQDKVLMHFLNMGLPMKPSILVQKQSKEEMATSLGDNIKAEDYQKKQTYEPVNARETNHEGELAEKMPIHVHRSSDTGSQKRPLKGVTFSKEVIVVDLGNEYPTPRSYAREHKERK", "sequence_length": 196, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b9e2abf6afa4ad49fcf55d9a7d9b81188230a182cd767a891e709f7008ed5bfd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q810S2.json", "taxon_id": "10090", "uniprot_accession": "Q810S2", "uniprot_release": "2026_03" } ], "pfam_id": "PF15484", "short_name": "DUF4642", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4643-pf15485.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15485", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4643-pf15485.yaml" } ], "pfam_ids": [ "PF15485" ], "protein_name": "Proline-rich protein 33", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGPQVVASAPEPTRPPSGFVPVSGGGGTHVTQVHIQLAPSPHNGTPEPPRTAPEVGSNSQDGDATPSPPRAQPLVPVAHIRPLPTTVQAASPLPEEPPVPRPPPGFQASVPREASARVVVPIAPTCRSLESSPHSLVPMGPGREHLEEPPMAGPAAEAERVSSPAWASSPTPPSGPHPCPVPKVAPKPRLSGWTWLKKQLLEEAPEPPCPEPRQSLEPEVPTPTEQEVPAPTEQEVPALTAPRAPASRTSRMWDAVLYRMSVAEAQGRLAGPSGGEHTPASLTRLPFLYRPRFNARKLQEATRPPPTVRSILELSPQPKNFNRTATGWRLQ", "sequence_length": 331, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "44c620e018ae81f488a8c93ca574381de8a6ea99dded89d282d90e720b38322c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A8MZF0.json", "taxon_id": "9606", "uniprot_accession": "A8MZF0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4643-pf15485.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15485", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4643-pf15485.yaml" } ], "pfam_ids": [ "PF15485" ], "protein_name": "Proline-rich protein 33", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALDGDKSLCTSSTQPLIPVAHIRPLPAGVQTVSPRPEEPSITRPPPSFQASVNRESGARVVVPIAPTYRSPGPSPYSPPPAAPEAKHVEEPPTARPAMEPRNVSSLPGASGPSDLHPYPVPKVAPKPSRSGWTRLKKQLMEEAKEPAFPELKPNLEPMQPEVPAPVVGLQPPASRASRMWDAVLYRMSLAESHRDHPVGPGDRGHPLACLNRLPFLCRPRFNARKLQEVVRPPPTFHPILELHSRPKNFNRTAEGWRLQ", "sequence_length": 260, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2fa3756428be0b2987476bd1a48849dd40b3981e6825aa521ccb7e2e5c503231", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C494.json", "taxon_id": "10090", "uniprot_accession": "Q8C494", "uniprot_release": "2026_03" } ], "pfam_id": "PF15485", "short_name": "DUF4643", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4644-pf15486.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4644-pf15486.yaml" } ], "pfam_ids": [ "PF15486" ], "protein_name": "Uncharacterized protein C16orf90", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEALVCAFSELHIREDAVSQAQGRPGHPDAPPNIYEGGLGSPQPQCPSAQGSKPKNFRLRHLRGLGLYLESHPPPTGQCESHWLGRLMAGGCLPQPEGTAWALDLPQGTLGPRNSLCSALLEARLPRDSLGSSASSSSMDPDKGALPQPSPSRLRPKRSWGTWEEAMCPLCKRTRSGALERP", "sequence_length": 182, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7756aea6c8b00a48c14cbbe6e4684ba7bacf1d847bb32b1e14f526aadf3c2a85", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/A8MZG2.json", "taxon_id": "9606", "uniprot_accession": "A8MZG2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4644-pf15486.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4644-pf15486.yaml" } ], "pfam_ids": [ "PF15486" ], "protein_name": "Uncharacterized protein C16orf90 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEALVYAVSWAPGRTSHPDTPPNIYEGGLGAQQKQCPSAQGSKPKNFRLRHLRGLALYLPGHLQPAGQCESHWLGRLLAGGCLPQPEGLVWPLDLAQGTVGRGNSHHSALLEAQLPRDSRGNTASSSSMDPAKGAPSQSGPPEGLGLRPKRSWGAPEETTCPLCKRTRSGGLERL", "sequence_length": 175, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d63fa89549da7ed6cd9ce436dfed0ef41f8029f5693f3d14ccf9eddda1941adf", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q32LI1.json", "taxon_id": "9913", "uniprot_accession": "Q32LI1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4644-pf15486.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15486", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4644-pf15486.yaml" } ], "pfam_ids": [ "PF15486" ], "protein_name": "Uncharacterized protein C16orf90 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDAVSWAPGRPSHPDTPPNIYEGGLGAQQQQGPSAQGSKPKNFRLRHLRSLALYLPGHMQPAGQCGSHWLGRLMAGGSLTRPEGSPWPLDLPQGTLGPGNSHCSALLEAHLPRDSLGNTASSSSMDPAKGVPSQSGPPEGLGLRPKRSWRALEETMCPLCKRTRSGALERT", "sequence_length": 171, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8df3e5c046f15fbc5a1f156f466a4161551f0d325e2bf396f07ae1686f17671f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BT88.json", "taxon_id": "10090", "uniprot_accession": "Q8BT88", "uniprot_release": "2026_03" } ], "pfam_id": "PF15486", "short_name": "DUF4644", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4645-pf15488.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15488", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4645-pf15488.yaml" } ], "pfam_ids": [ "PF15488" ], "protein_name": "Proline-rich protein 32", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MACTENGLAGHSHSPIIVPVDKNRSKETCHNVQLRSLSSMLKDDEDDADVWTRPPVSLRPPFNVPRTGARIPQNPRAPRHPLTLTPAIEEESLATAEINSSEGLESQSQKGHDSINMSQEFSGSPMALMIGGPRVGSRVLERSGNNSKPYIPVPRSQGFFPPRGSQSRGPPYIPTLRSGIMMEVTPGNARMANRGNMAHVSFPLGSPRHPMDNWQQSPSLPLSPSITGLPCSSAHCFLPPQAPAFNPFPVMPTAFASPLRFGPPLLPYVFHYNTGAMYPPPYLN", "sequence_length": 284, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "04c7c3a46963ec90a55bbf92610eac9ea81b133b6b0013c9361dd0cbca2f61a0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2AFE9.json", "taxon_id": "10090", "uniprot_accession": "A2AFE9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4645-pf15488.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15488", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4645-pf15488.yaml" } ], "pfam_ids": [ "PF15488" ], "protein_name": "Proline-rich protein 32", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MACIENVLGGHAPSPTAVAAAENGNREPRPSLPFQCPKDDAGSWGHPGVPLRPPFKVLSDLARERLERPSERTGSCIPVDGWRALKPPYGPPPAVAEEPLATGEVNSSEGPAGWRQSGQDSINNVSQEFSGSPPALMVGGTKVSNGGTERGGSNAGLYVALPRGQGFFPSRGPQVRGPTHISTLRSGIMMELPPGSTRVTGKERLARVSFPLGGPRHPVKNWPRPMPLASSTTGLGSRTTAHCFIPPRPPSFNPFLAMPMAFAPPPIFGPPLPSCFADFPSWGMPAPASSNRENN", "sequence_length": 295, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "950ec3dec0a0827173a68fdf7015cdc4ad08e20c7cff2678861b478ad753921f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5PJK7.json", "taxon_id": "9913", "uniprot_accession": "A5PJK7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4645-pf15488.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15488", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4645-pf15488.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:B1ATL7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15488" ], "protein_name": "Proline-rich protein 32", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "9ef220c6f3328c8ef5a2a715a0f52187da95c3e66af369f9b81a3b4da2c7175c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MACIENVLGGHAPSPLVVSVDKNGNQELHHDMPLQCLSSKPEDDAEPWGQPQVPLRPSVNVLTDLDSKQLEWPSERTGSCIPLHSLRAHRHPYGPPPAVAEESLATAEVNSSDALAGWRQEGQDAINVSWEVSGGPPALIVGGTKVNNGGTERGSNNARLHVALPQGKGFFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMHNWPRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPSYFAHFHSGGMPAPASPNREHS", "sequence_length": 298, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "9ef220c6f3328c8ef5a2a715a0f52187da95c3e66af369f9b81a3b4da2c7175c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B1ATL7.json", "taxon_id": "9606", "uniprot_accession": "B1ATL7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15488", "short_name": "DUF4645", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4646-pf15496.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15496", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4646-pf15496.yaml" } ], "pfam_ids": [ "PF15496" ], "protein_name": "Uncharacterized protein C1198.03c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDIKDEKALTIEKACTINVFAPFVRNVTAEDEKAVTNKKHINSSATVHVFHGVVNRTFKTKGNTVGLPKSFSKAVIETLSYKPFAPICIHSRSDEVVNGFPLIYFPEDLASHDISGKDWKSFIHDVNMACSFSDVALMGLDQILNLVSFGLSAYVISYYVEKYVDKAKFPIIKGFIEMWNRKFFNPRKTHVYFINSDEVAEQRAVSIKAYQQGKGTKGLFSKFNAQREWKKQHQDISSTQHSRLLLISL", "sequence_length": 249, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ed34b375f818cee802f3122c358386e9a41467b0970582bd228314a43ba0dd4a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9P6I6.json", "taxon_id": "284812", "uniprot_accession": "Q9P6I6", "uniprot_release": "2026_03" } ], "pfam_id": "PF15496", "short_name": "DUF4646", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4647-pf15504.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4647-pf15504.yaml" } ], "pfam_ids": [ "PF15504" ], "protein_name": "Uncharacterized protein C9orf43", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLPDESQWDETTCGLAVCQHPQCWATIRRIERGHPRILGSSCKTPLDAEDKLPVLTVVDILDSGFAAHHLPECTFTKAHSLLSQSSKFYSKFHGRPPKGLPDKSLINCTNRLPKFPVLNLNETQLPCPEDVRNMVVLWIPEETEIHVSQHGKKKRKNSAVKSKSFLGLSGNQSAGTRVGTPGMIVPPPTPVQLSEQFSSDFLPLWAQSEALPQDLLKELLPGGKQTMLCPEMKIKLAMMKKNLPLEKNRPDSVISSKMFLSIHRLTLERPALRYPERLKKLHNLKTEGYRKQQQRQQQQQQQQKKVKTPIKKQEAKKKAKSDPGIQSTSHKHPVTTVHDRLYGYRTLPGQNSDMKQQQQMEKGTTSKQDSTERPKMNYYDHADFHHSVKSPELYETEPTNKDISAPVDAVPEAQAARQKKISFNFSEIMASTGWNSELKLLRILQDTDDEDEEDQSSGAE", "sequence_length": 461, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9b44fff4ccf748e20b3be2f394a2f28e5da59d5fd2d54435be4baf3c9a1089c0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TAL5.json", "taxon_id": "9606", "uniprot_accession": "Q8TAL5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Macaca fascicularis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4647-pf15504.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4647-pf15504.yaml" } ], "pfam_ids": [ "PF15504" ], "protein_name": "Uncharacterized protein C9orf43 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLPDESQWDETTCGFAVCQHPQCWATVRRIERGRPRILGSTCKTPLDAEDKLPVLTVVNISDSCFAPRHLPECTVTKARSLLSRSSKFYSKFHGRPPKGLPDKSLINCTNRLPKLPVLNLNETQLPCPEDVRNMVVLWIPEETEIHGRQHGKKKRKNLTVKSKSFLGLSGNQSAVTRVETPGMTVPPPTPVQLSKQFSSDFLPLWAQSEALPQDLLKELLPDRKQTMPCLEMKIKLAMMKKNLPLERNRPDSAISSKMFLSIHRLTLERPALRYPERLKKLHNLKTEGYRKQQQWQQQQQQRKVKTPIKKQEAKKKAKSDPGSQSTSHKHPVTTVHDPLYGYRTLPGQNGDMKQQQQMEKGTTSKQDSTERPKMDYCDHVDFHHNVKGPELYETEPTNKDISAPVEAVLKAQAARQKKISFNFSEIMVRTGWNSELKLLRILQETDDEDEENQYSEAEKPLEE", "sequence_length": 464, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "acae043bfce46750b4b7191220dbb60f55df75b2993889eeb52c047b936d724f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q95JN2.json", "taxon_id": "9541", "uniprot_accession": "Q95JN2", "uniprot_release": "2026_03" } ], "pfam_id": "PF15504", "short_name": "DUF4647", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vexin-domain-ipr027900.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vexin-domain-ipr027900.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vexin-pf15505.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15505", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vexin-pf15505.yaml" } ], "pfam_ids": [ "PF15505" ], "protein_name": "Vexin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHQIYSCSDENIEVFTTVIPSKVSSSSRRRVKSSHHLLAKNVVIESDLYPPPRPLELLPQRCERRDTGDRRWLQTGRLQTARPPGAHPTKTPSRPVGISEPKTSNLCGNRAYGKSLIPPVARISVKAPAGAEVAAKGSEHGAVLGRGSRHLKKIAEEYPALPQGAEASLPLTGSTSCGVPGILRKMWTRHKKKSEYVGATNSAFEAD", "sequence_length": 207, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c77b60d504ee783b00eff634473846a328d4750fe3308ba9d80a25bc6fe344af", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BG31.json", "taxon_id": "10090", "uniprot_accession": "Q8BG31", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vexin-domain-ipr027900.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vexin-domain-ipr027900.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vexin-pf15505.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15505", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vexin-pf15505.yaml" } ], "pfam_ids": [ "PF15505" ], "protein_name": "Vexin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMHQIYSCSDENIEVFTTVIPSKVSSPARRRAKSSQHLLTKNVVIESDLYTHQPLELLPHRGDRRDPGDRRRFGRLQTARPPTAHPAKASARPVGISEPKTSNLCGNRAYGKSLIPPVPRISVKTSASASLEATAMGTEKGAVLMRGSRHLKKMTEEYPALPQGAEASLPLTGSASCGVPGILRKMWTRHKKKSEYVGATNSAFEAD", "sequence_length": 207, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a6619c4df50b3ab4701278e7dfa52ec8df627a217ff74522073d121fa38f2012", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TAG6.json", "taxon_id": "9606", "uniprot_accession": "Q8TAG6", "uniprot_release": "2026_03" } ], "pfam_id": "PF15505", "short_name": "Vexin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15507", "short_name": "DUF4649", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { 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"canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4650-ipr029388.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ubiquitin-specific-peptidase-like-sumo-isopeptidase-ipr028890.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028890", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ubiquitin-specific-peptidase-like-sumo-isopeptidase-ipr028890.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4650-pf15509.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15509", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4650-pf15509.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/peptidase-c98-pf15499.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15499", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/peptidase-c98-pf15499.yaml" } ], "pfam_ids": [ "PF15499", "PF15509" ], "protein_name": "SUMO-specific 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"MTDDSLKIGNGLPLVGPGTDVGISSLPMLGYLGKNYASAKVTTDGHCPACRAKGKLSALKPYRISFQESVFLCEDLQCIYPLGSESLTNLISPDSEDCPTPSKPQKRKRLETNCRNSPLPVHSKKTRSHIVTDSEPIVNGKYNGEVCDDFSASFPDTSAHQDPASTAASVEQSEALEADDVVVAATEDPATVSVTSELEMPAKSRCLPLCQTLCVQWKNTQALCWLDCILSALVHLEVLRKTVLEACSREECVFGRLFEMYHQADELLHTHHLHGVTGEDCKKLTSEIFTEIDTCLNKVRDEIFAKLQPKLRCTLGDMESPVFALPVLLKLEPHVESLFTYSFSWNFECSHCGHQYQNRCVKSLVTFTNIVPEWHPLNAAHFGPCNSCNSKSQIRKMVLERASPILMLHFVEGLPRRDLQHYAFHFEGSLYQVTSVIQYQANNHFITWFLDADGSWLECDDLKGPCAKRHVTCEVPASETHIVIWERKSQVPIEEAACLPCMKPNVQPVSGEEQPTCPALCSLAGTATSEPSVAHPTSMAGAPQTLPEIQAVAHGDSVLSGAKGMVDSILPSALEETIQETASVSQVDSKDCLLEDKPVAGSAALVRVLAFQPQDSPGSSGSSLVSSLCEGKLVAPCVDSSFPSQAVSTDLQAVLSQAGDTVVPNPVTDAPVPVLVQELKSLATEKDSQTQLLPLKTEKLDPEQPGKSQASNLRKRETTASSKTVAARSAQNQPRKEDQKRAFVGSWVKGLLSRGGAFMPTCVLSQSRAVSDLQPSVKGASNFDGFKTKSISRRSKRMSRKAKHMEELSPRNSSPPLSWTAALTQAAENATSALLREQEGSRPAPLRHRSPGNESAISPASRGDAAEDQVHKLRLKLLKKLKAKKKKLAALISSPHREPSLSDHSEPASHCGTPASDQSEPVSHCGSPNDCESIEDLLKELQHQIDLADSKSGCTSAPDATSNNSQSHEEILAELLSPTAMSEPSESGELELRYLEMGDSTPAQAPSEFSVVSLNTCLKQDHDYCSPEKGQREVDLHSVMDSACIRTLNLGSPMKTDIFDDFFSTSALNSLTNDTLDIPHFDDSLFENC", "sequence_length": 1089, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d2dbdfd6733ba5ee364c515f379dbbb30bc264895171924786f86b190a4246c3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3ULM6.json", "taxon_id": "10090", "uniprot_accession": "Q3ULM6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/snrna-transcription-go0009301.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009301", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/snrna-transcription-go0009301.yaml" }, { "cited_uniprot_accession": "", "commit": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ubiquitin-specific-peptidase-like-sumo-isopeptidase-ipr028890.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4650-pf15509.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15509", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4650-pf15509.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/peptidase-c98-pf15499.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15499", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/peptidase-c98-pf15499.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5W0Q7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15499", "PF15509" ], "protein_name": "SUMO-specific isopeptidase USPL1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d2f2560ed096345f54ebe02790d64e4c007519cd6e9d26c6e90f4d9354d388e2", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MMDSPKIGNGLPVIGPGTDIGISSLHMVGYLGKNFDSAKVPSDEYCPACREKGKLKALKTYRISFQESIFLCEDLQCIYPLGSKSLNNLISPDLEECHTPHKPQKRKSLESSYKDSLLLANSKKTRNYIAIDGGKVLNSKHNGEVYDETSSNLPDSSGQQNPIRTADSLERNEILEADTVDMATTKDPATVDVSGTGRPSPQNEGCTSKLEMPLESKCTSFPQALCVQWKNAYALCWLDCILSALVHSEELKNTVTGLCSKEESIFWRLLTKYNQANTLLYTSQLSGVKDGDCKKLTSEIFAEIETCLNEVRDEIFISLQPQLRCTLGDMESPVFAFPLLLKLETHIEKLFLYSFSWDFECSQCGHQYQNRHMKSLVTFTNVIPEWHPLNAAHFGPCNNCNSKSQIRKMVLEKVSPIFMLHFVEGLPQNDLQHYAFHFEGCLYQITSVIQYRANNHFITWILDADGSWLECDDLKGPCSERHKKFEVPASEIHIVIWERKISQVTDKEAACLPLKKTNDQHALSNEKPVSLTSCSVGDAASAETASVTHPKDISVAPRTLSQDTAVTHGDHLLSGPKGLVDNILPLTLEETIQKTASVSQLNSEAFLLENKPVAENTGILKTNTLLSQESLMASSVSAPCNEKLIQDQFVDISFPSQVVNTNMQSVQLNTEDTVNTKSVNNTDATGLIQGVKSVEIEKDAQLKQFLTPKTEQLKPERVTSQVSNLKKKETTADSQTTTSKSLQNQSLKENQKKPFVGSWVKGLISRGASFMPLCVSAHNRNTITDLQPSVKGVNNFGGFKTKGINQKASHVSKKARKSASKPPPISKPPAGPPSSNGTAAHPHAHAASEVLEKSGSTSCGAQLNHSSYGNGISSANHEDLVEGQIHKLRLKLRKKLKAEKKKLAALMSSPQSRTVRSENLEQVPQDGSPNDCESIEDLLNELPYPIDIASESACTTVPGVSLYSSQTHEEILAELLSPTPVSTELSENGEGDFRYLGMGDSHIPPPVPSEFNDVSQNTHLRQDHNYCSPTKKNPCEVQPDSLTNNACVRTLNLESPMKTDIFDEFFSSSALNALANDTLDLPHFDEYLFENY", "sequence_length": 1092, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d2f2560ed096345f54ebe02790d64e4c007519cd6e9d26c6e90f4d9354d388e2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5W0Q7.json", "taxon_id": "9606", "uniprot_accession": "Q5W0Q7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15509", "short_name": "DUF4650", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15513", "short_name": "DUF4651", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15525", "short_name": "DUF4652", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Xenopus tropicalis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4653-pf15546.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15546", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4653-pf15546.yaml" } ], "pfam_ids": [ "PF15546" ], "protein_name": "UPF0500 protein C1orf216 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFTIQKPDTVSHLSHFHESKSLGSLPFPSDKERKQDTNFNILEETYDKNENWSQDKKGGEEGENKSKSEDEHSSLDNNRSQLKNRPIGQLKSTGSEGISLSSSEEEVRSPPEGAEIMQLEGDTPANDTANGFEKWAGSPLEDNGYASSSLSIDSPDSVSASTWQETTLPAPTTTPQENPETEDSDVESSSDSDSISVTLSEAFQSLQDKEKLKEREKEKHHAQLTMYRRLALLRWIRALQQKVRDQQNRLQESFDTILDNRKEMLRHMQHGYNKTPTKEAV", "sequence_length": 281, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "94573d870a6f7a63b10b49b06175435e70c8b4c17ed96d22cc18d9a3160c672d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A4IH95.json", "taxon_id": "8364", "uniprot_accession": "A4IH95", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Xenopus laevis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4653-pf15546.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15546", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4653-pf15546.yaml" } ], "pfam_ids": [ "PF15546" ], "protein_name": "UPF0500 protein C1orf216 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFTIQKPDTVSHLSHFHESKSLGSLPFPSDKERKQDTNFNILEETYDKNENWSQDKKGGEEGENKSKSEDEHSSLDNNRSQLKNRPIGQLKSTGSEGISLSSSEEEVRSPPEGAEIMQLEGDTPANDTANGFEKWAGSPLEDNGYASSSLSIDSPDSVSASTWQETTLPAPTTTPQENPETEDSDVESSSDSDSISVTLSEAFQSLQDKEKLKEREKEKHHAQLTMYRRLALLRWIRALQQKVRDQQNRLQESFDTILDNRKEMLRHMQHGYNKTPTKEAV", "sequence_length": 281, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "94573d870a6f7a63b10b49b06175435e70c8b4c17ed96d22cc18d9a3160c672d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q52KN3.json", "taxon_id": "8355", "uniprot_accession": "Q52KN3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4653-pf15546.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15546", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4653-pf15546.yaml" } ], "pfam_ids": [ "PF15546" ], "protein_name": "UPF0500 protein C1orf216", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFAIQPGLAEGGQFLGDPPPGLCQPELQPDSNSNFMASAKDANENWHGMPGRVEPILRRSSSESPSDNQAFQAPGSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEPACGTPRGPGPPDPLLPSVAQAVQHLQVQERYKEQEKEKHHVHLVMYRRLALLQWIRGLQHQLIDQQARLQESFDTILDNRKELIRCLQQRAAPSRPQDQA", "sequence_length": 229, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4be79019015cd7d3dbde8da3e3b261ebccc2016480d647c091e33f55cd4e9bba", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TAB5.json", "taxon_id": "9606", "uniprot_accession": "Q8TAB5", "uniprot_release": "2026_03" } ], "pfam_id": "PF15546", "short_name": "DUF4653", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/c1orf64-pf15547.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15547", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/c1orf64-pf15547.yaml" } ], "pfam_ids": [ "PF15547" ], "protein_name": "Steroid receptor-associated and regulated protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFSKDPRRTSLRDSSVEMSSGTQPSCAPKAMPTAHVTFLIDCATGKQVSLAASTAPPHASRANQGCVAPPMKTFVMFRGKTTMLGTQNISLSRGALDGAKDTLPPYRGLGAPHSLPASLPGPQNDPKAQGSSLKPGATEKHSTREKVKHSLKALTCLCGQVE", "sequence_length": 163, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2fb6f438acd26eb391ec850bebe0d94f5968d4ae76a6fb48f0b3b152ecada6f0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3ULG3.json", "taxon_id": "10090", "uniprot_accession": "Q3ULG3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/c1orf64-pf15547.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15547", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/c1orf64-pf15547.yaml" } ], "pfam_ids": [ "PF15547" ], "protein_name": "Steroid receptor-associated and regulated protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPSEDPRDWRANLKGTIRETGLETSSGGKLAGHQKTVPTAHLTFVIDCTHGKQLSLAATASPPQAPSPNRGLVTPPMKTYIVFCGENWPHLTRVTPMGGGCLAQARATLPLCRGSVASASFPVSPLCPQEVPEAKGKPVKAAPVRSSTWGTVKDSLKALSSCVCGQAD", "sequence_length": 169, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fa424c16b832bf00da6b909192d027449a67b4e579d98095973b13d984367574", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NEQ6.json", "taxon_id": "9606", "uniprot_accession": "Q8NEQ6", "uniprot_release": "2026_03" } ], "pfam_id": "PF15547", "short_name": "C1ORF64", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/sperm-annulus-go0097227.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0097227", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/sperm-annulus-go0097227.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/hematopoietic-stem-cell-homeostasis-go0061484.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061484", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/hematopoietic-stem-cell-homeostasis-go0061484.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/spermatid-differentiation-go0048515.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0048515", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/spermatid-differentiation-go0048515.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/duf4655-pf15548.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15548", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/duf4655-pf15548.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O43236", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00735", "PF15548" ], "protein_name": "Septin-4", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f29ad71f36d67f776f5834aafea4941eb019e474dc70f577f7f83d533cee825d", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVKTNKPGAKVAVSAQRGSEVTTNTSPQQGHGYVLASSHRSAAVSLNPSHRRSEAAHPTTPHSASDYPRSVSLQSGPGHYAVPTPRGPETGPRTESSRHSSPHLKSQKTQTLASHASSRQWKVSPPREEAARRGSESKSGREVGHHASSIPDAKSTHQLSFQDQKNNLQSQILEDDPPSKVQNPQGVRVPRRILSYPKDEAVQTEPIQRITTTSEIRSPRSPSLLEHGSSCVSADYQTAQRRVPVEESETGPYGPIPSKPKALYRNMNLDSLLKLSVLKDSDGVHRVSARVDPESLHKYSAYPETKPSAKVLVSSQVESNVRTPIRGNSEVGRRVTISPGVQSVEPTHHVTVPSVSEGSHKSSMFVTPEPIYKQQTQKPPEITYMSQGPTPRYPELSQKPSIHAELELTPRPLPPRSLPRYGPDSSWWPLLNPEVETPQSQLTTPDFEPKCSPSLDLLLSGFKIDSSPFCEDLKFQREKASLSPPSPPKEFPSWAPLSEVPQTPKHTCKQPIQRFTAFFLDVSEEMYNRVIWWLKDEEIKRFLEDTTDDGELSKFVKDFSGNASCHPPEAKTWASRPQVPEPRPQAPDLYDDDLEFRPPSRPQSSDNQQYFCAPAPLSPSARPRSPWGKLDPYDSSEDDKEYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIMQTVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRDESGLNRKNIQDNRVHCCLYFISPFGHGLRPLDVEFMKALHQRVNIVPILAKADTLTPPEVDHKKRKIREEIEHFGIKIYQFPDCDSDEDEDFKLQDQALKESIPFAVIGSNTVVEARGRRVRGRLYPWGIVEVENPGHCDFVKLRTMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVVKERNRNKLTRESGTDFPIPAVPPGTDPETEKLIREKDEELRRMQEMLHKIQKQMKENY", "sequence_length": 996, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f29ad71f36d67f776f5834aafea4941eb019e474dc70f577f7f83d533cee825d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O43236.json", "taxon_id": "9606", "uniprot_accession": "O43236", "uniprot_release": "2026_03" } ], "pfam_id": "PF15548", "short_name": "DUF4655", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/limb-epidermis-development-go0060887.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0060887", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/limb-epidermis-development-go0060887.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-epidermal-cell-differentiation-go0045606.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0045606", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-epidermal-cell-differentiation-go0045606.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-epidermal-cell-division-go0010482.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010482", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-epidermal-cell-division-go0010482.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4656-pf15551.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15551", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4656-pf15551.yaml" } ], "pfam_ids": [ "PF15551" ], "protein_name": "Keratinocyte differentiation factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPRPGQPRPSSGPPRLGPWERPSELCLETNDERSQPPPGRRTRRPDPKDPGHHGPESITFISGSAEPANEPPTCCLLWRPWGWDWCRAAFCFRRCRDCLQRCGACVRGCSPCLSAGDPIEGSAEAAWAKEHNGVPPSPDRAPPSRRDGQRLKTSMGSSFSYPDVKLKGIPVYPYRHATSPVPDVDSCCKEPLAEPPPTRHSLPSTFTNSPRGSEEYYSFHESDLDLPEMGSGSMSSREIDVLIFKKLTELFSVHQIDELAKCTSDTVFLEKTSKISDLISSITQDYHLDEQDAEGRLVRGIIRISTRKSRSRPQTSEGRSARSTAPAAAPDSGHETMLGSGLSQDELTVQISQETTADAIARKLRPYGAPGYPASQDSSFQGTDTDSSGAPLLQVYC", "sequence_length": 397, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "847aba71c25c63e8f7a41332241176c16ce6be7bcb475ff0f0dbbe432bb29884", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2A9F4.json", "taxon_id": "10090", "uniprot_accession": "A2A9F4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4656-pf15551.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15551", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4656-pf15551.yaml" } ], "pfam_ids": [ "PF15551" ], "protein_name": "Keratinocyte differentiation factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPRPGQPRPSSGPPRLGPWERPTELCLETNDERSQPPPGRRTRRPDPKDPGHHGPESITFISGSAEPANEPPTCCLLWRPWGWDWCRAAFCFRRCRDCLQRCGACVRSCSPCLSAGDPIEGSSEAAWAKEHNGVPPSPDRAPPSRRDGQKLKTSMGSSFSYPDVKLKGIPVYPYRHATSPVPDADSCCKEPLADPPPTRHSLPSTFTSSPRGSEEYYSFHESDLDLPEMGSGSMSSREIDVLIFKKLTELFSVHQIDELAKCTSDTVFLEKTSKISDLISSITQDYHLDEQDAEGRLVRGIIRISTRKSRSRPQTSEGRSARSTAPAAAPDSGHETMVGSGLSQDELTVQISQETTADAIARKLRPYGAPGYPASQDSSFQGTDTDSSGAPLLQVYC", "sequence_length": 397, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "66a1289ca86136a2e4530f4390fefd25a4391391d27b3605df7bc1bd06dee5b5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6AY88.json", "taxon_id": "10116", "uniprot_accession": "Q6AY88", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/limb-epidermis-development-go0060887.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0060887", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/limb-epidermis-development-go0060887.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-epidermal-cell-division-go0010482.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0010482", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-epidermal-cell-division-go0010482.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4656-pf15551.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15551", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4656-pf15551.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8NAX2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15551" ], "protein_name": "Keratinocyte differentiation factor 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3113765a0f126301d339fa47dab8cf426eaa1d67818e4ac25fc16a118547fb8b", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPRPGHPRPASGPPRLGPWERPTELCLETYDKPPQPPPSRRTRRPDPKDPGHHGPESITFISGSAEPALESPTCCLLWRPWVWEWCRAAFCFRRCRDCLQRCGACVRGCSPCLSTEDSTEGTAEANWAKEHNGVPPSPDRAPPSRRDGQRLKSTMGSSFSYPDVKLKGIPVYPYPRATSPAPDADSCCKEPLADPPPMRHSLPSTFASSPRGSEEYYSFHESDLDLPEMGSGSMSSREIDVLIFKKLTELFSVHQIDELAKCTSDTVFLEKTSKISDLISSITQDYHLDEQDAEGRLVRGIIRISTRKSRARPQTSEGRSTRAAAPTAAAPDSGHETMVGSGLSQDELTVQISQETTADAIARKLRPYGAPGYPASHDSSFQGTDTDSSGAPLLQVYC", "sequence_length": 398, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3113765a0f126301d339fa47dab8cf426eaa1d67818e4ac25fc16a118547fb8b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NAX2.json", "taxon_id": "9606", "uniprot_accession": "Q8NAX2", "uniprot_release": "2026_03" } ], "pfam_id": "PF15551", "short_name": "DUF4656", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4657-ipr027958.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027958", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4657-ipr027958.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4657-pf15552.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15552", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4657-pf15552.yaml" } ], "pfam_ids": [ "PF15552" ], "protein_name": "Uncharacterized protein C8orf58 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSRRRVFAVERLGGRDGAFEDLAQGCVVPGVTCTYRRIPDNTHECSLDFREGQNELRGLERQMPLLKLASQDSGMEMVVGDSSLATLSGLSQDSLNLEPMGSPELPPAQLDRLLARQKLEEVLERSREFPSLSAQRGPLQLLNKPVDGVPIFAGEQESTEADTELEAGLEEAKEVGNMESAACTCLPGQGLRYLEHLCLVLEQMVRLQQLYLQLQTQRPSRDPEEEVLAPALSSSHIPDNRVQEHREELSQTKDPEGAEAASLPEVGVLVTSPSRLPEALLEPTHILPPSQEPKDLSHWDKVKVLLNRLRWRSPRLPEPPVPPDGSGSRMEFRNLSDRTPCHSQRKTFIPALVVKKPRAKNLSV", "sequence_length": 365, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "119f55316d05bb6a5c0c5818e8deb56b19a222a577170f6b2a74eabe14dc0d27", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q66JV7.json", "taxon_id": "10090", "uniprot_accession": "Q66JV7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4657-ipr027958.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027958", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4657-ipr027958.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4657-pf15552.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15552", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4657-pf15552.yaml" } ], "pfam_ids": [ "PF15552" ], "protein_name": "Uncharacterized protein C8orf58", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMGRRRAFAVDGRDGAGEGLARGCIVPGVTSTYRRIPDAAHGCSSWERGDKFRGVGREALFLKLASRDSGVEMAVGDSPLAALPGLSQDSLDFESSGSSEPPAQVGRLLASQKLGEVLERSRRLPTAPTSLSGQHRSLRLASKPEREVPLGAGQQESMEADTDLEAGLEEEAVGGLGPGAWACLPGQGLRYLEHLCLVLEQMARLQQLYLQLRIQRPPGDPGEEESTRAPLPSPLHTPGNRGQGPWELLSQTEHTGAKAASPPKVEVPSANPPRLPETPVEPTYHLPSSQGHKRDISHWDKVKVLLNRICRRSHHHPEPPAPPDGSDPRIESRDLPERPQCRPHRKTFMPSLVVKKQRAKNLSVG", "sequence_length": 365, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0be75b727b34fdd2a45228ee99b24ce0bf8f018f78e5c018b07dcd28e3f1d57f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NAV2.json", "taxon_id": "9606", "uniprot_accession": "Q8NAV2", "uniprot_release": "2026_03" } ], "pfam_id": "PF15552", "short_name": "DUF4657", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4658-pf15555.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15555", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4658-pf15555.yaml" } ], "pfam_ids": [ "PF15555" ], "protein_name": "Nutritionally-regulated adipose and cardiac-enriched protein homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTAVHALSPDSRPETQHQTRKNEEAAPGSPTPRAGREGRKGPASILRRSPQERCGRGDEPRRTTRHVRFREPLEVAVHYIACREPTTAVQAPSRPRPRGGSLLLRLTACILLALALGMCCGQAGPMARALEDFRARLLAALLRLPLAALDCWRCLLQL", "sequence_length": 159, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "acd2054d0a30a71b6e50a4100758557aeda7d21f8c80add0647a7db32875c99a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q29RM6.json", "taxon_id": "9913", "uniprot_accession": "Q29RM6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4658-pf15555.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15555", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4658-pf15555.yaml" } ], "pfam_ids": [ "PF15555" ], "protein_name": "Nutritionally-regulated adipose and cardiac-enriched protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSAARVSRSNSHPRTRHPTRENEGTTWGSQPSRTERDGDRKCPPSILRPRRQECGCHGGEPQKTSRHVRFREPLEVAVHYIARKDTTAAIKVPSRPASHGGSPLQPASCSGSLFLWLTLCALLGVVLVLYCGQAKRVTAALEDLLAQLLALILRLWRVVLACWH", "sequence_length": 165, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f690c00a6a4f838a6ce8ea82386a4ecc5f6f64552f5d4f41fa571249a3ca4f4c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BNX7.json", "taxon_id": "10090", "uniprot_accession": "Q8BNX7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4658-pf15555.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15555", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4658-pf15555.yaml" } ], "pfam_ids": [ "PF15555" ], "protein_name": "Nutritionally-regulated adipose and cardiac enriched protein homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRTAAGAVSPDSRPETRRQTRKNEEAAWGPRVCRAEREDNRKCPPSILKRSRPEHHRPEAKPQRTSRRVWFREPPAVTVHYIADKNATATVRVPGRPRPHGGSLLLQLCVCVLLVLALGLYCGRAKPVATALEDLRARLLGLVLHLRHVALTCWRGLLRL", "sequence_length": 160, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fea8367d5b572aa0e34e57520729254de089ec9291c661a93821da62e998028c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N912.json", "taxon_id": "9606", "uniprot_accession": "Q8N912", "uniprot_release": "2026_03" } ], "pfam_id": "PF15555", "short_name": "DUF4658", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4659-pf15558.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15558", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4659-pf15558.yaml" } ], "pfam_ids": [ "PF15558" ], "protein_name": "Coiled-coil domain-containing protein 177", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVDPVPEEEKEGAEPGGSEGDEATASEPPDAQGAQQPAASSASASAAAPRKAEVPCGAEGGRREQSPLLHLDLFNFACPEAEGSRYVLTSPRSLEACARCAVKPVELLPRALADLVREAPGRSMRVATGLYEAYEAERLAKLQQCRAERERIMREEKRRLFTPKGPAAAPASASASASASALSGGSSSSCSSSSSLPASPASRVARRTSPSPPARSRPPPAGSRTGRKSHSLDSLSRRRDGALSSESGASSSSYSGESLRELRWPPRASARNSCPAGSASSAPNPLGRPSALALVPLTARSFSLGDLSHSPQTAQHVERIVRQVRAERGLRGVPERDRKIAALMLARHQEERLLLEQRAAAHGQWEQQRVRAEQRREREEREKQRALERGRRAWAAQVEERRGRRGREEREAARRRQQQCERSEERRRELAERQGLLRRERVERAARDDRLRKLQQEQNLKQREEGRQEGRERAELVRRERAQRAARARERQEGQLQREKRELSRAERARHEALLRGRVRQQQEEREGLRSSLEASLGRAQENYEQLQEQRARELRERARREELQGRRAKEAAERKEREHQAHLEALARAGERRLQHAAQVAEEAVQQKARRVVQTRLEKERAQRANKEKVERDEDCRRRELLQAIGRKLERSEQLSRERRSALESARSTARASFHVREKVREETNTRSFDRMVREAQLHASLDRK", "sequence_length": 706, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "faf0d9c81dd6eeb65a7fc669e0188a1c3b7161132af3af62c57ab3531b315245", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UHB8.json", "taxon_id": "10090", "uniprot_accession": "Q3UHB8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4659-pf15558.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15558", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4659-pf15558.yaml" } ], "pfam_ids": [ "PF15558" ], "protein_name": "Coiled-coil domain-containing protein 185", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGFSHFSQPPYRDLWEPPRPGGERESTQRLGGQRSGADSTACSRAGTPGAESEAGACWLHPHCSFTPRPRRRGCSDSLRGSRSLSDVARRPLERSRKHRPRSRRLEDAWGETGTKPRPAWQPQTQLPPQRPQPCPHYPLAQGDSPPPCPGGAGTPLSGTFRVEKAQGGDQWAVPLGRHLGRWSPSSVPSERSSVPSQKFKRHSACVCAQKRDSSDQVESLASRDSQPLASSKEMRSPHTQVLKSKLEEVVVSSQDQQIVALVLTRLKKAQRIRELQQQAAKAWEELKRSDQKVQMTLERERRLLLRQSQEQWQEKEQRKTLQSPEQRGLRRDSQRKNVPPGESRWKEQPEDQESPRQEKLEKARAQAEHRKQCQVRRLREQEKMLRNLREQHSLQLQRRLVEACRKRHLHAVEGQKKVQDTNLSSLINYQARKVLMDCQAKAEELLRQLSLEQSFQRSQEIHQGLRKERQRELREKAQKEEEQLQQARWRAGESEEQRKMRKRILVELADEKIRQARSHVHKTTRDKVQHLRELNHLREKNHHILKLKAEKEEKCHIEGIKEAIKKKEQRVQHISQGKDPNFQEFQKLPQASRREERAPPNSSLDQMVLEAQLRACQQNRGY", "sequence_length": 623, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d596cbe02171749c8889d6570055cb899a53486d0d13b15ca342fb22ce03e0da", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N715.json", "taxon_id": "9606", "uniprot_accession": "Q8N715", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4659-pf15558.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15558", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4659-pf15558.yaml" } ], "pfam_ids": [ "PF15558" ], "protein_name": "Coiled-coil domain-containing protein 177", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVDPVPEEEKAGAEPGDSGGDEAVASVPPDSQGAQEPAASSASASASAAVPRKAEVPCAAAEGGRREQSPLLHLDLFNFDCPEAEGSRYVLTSPRSLEACARCAVKPVELLPRALADLVREAPGRSMRVATGLYEAYEAERRAKLQQCRAERERIMREEKRRLFTPLSPAAAAAAAAAAASAPSAGSSSSCSSASLPASPAPRAARKASPSPSSARTQPPPAGSRTGRKSHSLDSLSRRREGALSSESGASSSSYSGESLRELRWPPRASARNSCPAGSASSTTNAPGRPSALTLVPITGRSFSLGDLSHSPQTAQHVERIVRQVRAERGLRGVPERDRKIAALMLARHQEELLLLEQRAAAHGQWELQRVHAKQRREREEREKQRALEQGRRAWAAQVEERRGRRGREEREAARRRQRQYERSEERRRELAERQGLLRRERAERAAREDRLRKLQQEQNLKQREEGLQEGRERAEQIRRERAQRAARAKQRQEGQLQREKRELSRAERARHEALLQGRTRQQRQEREGLRSSLEASLGRAQENYEHLVEQRTRELRERARREELQGRRAKEAAERKEREHQAHLEALARAGERRLQHATQVAEEAVQQKARRVGQSRLEKERAQRANKEKVERDEDCRRRELLQAIGRKLERSEQLTRERRSALESARSTARASFHVREKVREETNTRSFDRMVREAQLHASLDRK", "sequence_length": 707, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c5ffef516b541011131da2dfacb5a26911c2834691a132f61550fdda2a02c415", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NQR7.json", "taxon_id": "9606", "uniprot_accession": "Q9NQR7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15558", "short_name": "DUF4659", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4660-pf15559.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15559", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4660-pf15559.yaml" } ], "pfam_ids": [ "PF15559" ], "protein_name": "UPF0690 protein C1orf52 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDEEKSETRNFFMGYDDLSDSSSDSESRSGPEATASSAPAEPQQSRKRAAEPLPRPDELFRSVSKPAFLYNPLNKAIDWDSRAVRAPEEPPKEFKVWKSSAVPPPQSYVTEENKKKAPAGMDMAIKWSNVYEDNGDDAPQAHRGPAHFLPEEEEEEQQPDSDDDSSSKLSKSAKKRRVETFQQKEKRKRDIGQATSDKNFVEEEKRILRQCLD", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "89a5ca4b2e28556699e22546d1558d869d2b6f711656e2f8d29f308f4a36095d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7SZP2.json", "taxon_id": "7955", "uniprot_accession": "Q7SZP2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4660-pf15559.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15559", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4660-pf15559.yaml" } ], "pfam_ids": [ "PF15559" ], "protein_name": "UPF0690 protein C1orf52", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAEEKDPLSYFAAYGSSSSGSSDEEDNIEPEETSRRTPDPAKSAGGCRNKAEKRLPGPDELFRSVTRPAFLYNPLNKQIDWERHVVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPPELDMAIKWSNIYEDNGDDAPQNAKKARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKKKK", "sequence_length": 182, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7fcc454c0916c1cd53da921e10d80902b69a7b8d957d5a9c335486c919fc5e89", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N6N3.json", "taxon_id": "9606", "uniprot_accession": "Q8N6N3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4660-pf15559.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15559", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4660-pf15559.yaml" } ], "pfam_ids": [ "PF15559" ], "protein_name": "UPF0690 protein C1orf52 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAEEKDPLSYFAAYGSSSSDSSDENSEPEDAGRKEAASAPTTGGRGKQAEKRLPGPDELFRSVTRPAFLYNPLNKQIDWERHVVKAPEEPPKEFKIWKSNCVPPPETYTTEKKPPPPELDMAIKWSNIYEDNGDDAPQNAKKARLLPEGEETVESDDDKDERASKIRRVEPGEAAKKKK", "sequence_length": 180, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7d34c24b752702278d58f34d4959a04bdf9dce32acc9d604e25bfc1fe359bf6e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CWU4.json", "taxon_id": "10090", "uniprot_accession": "Q9CWU4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15559", "short_name": "DUF4660", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4661-pf15576.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15576", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4661-pf15576.yaml" } ], "pfam_ids": [ "PF15576" ], "protein_name": "Uncharacterized protein C6orf47", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFLRRLGGWLPRPWGRRKPMRPDPPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKDSGALRVSGAASEPSKEEPQVEQLGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHVDSGGTRRPGVSPEGGLSVPGPGAPLEKPGRREKLLGWLRGEPGAPSRYLGGPEECLQISTNLTLHLLELLASALLALCSRPLRAALDTLGLRGPLGLWLHGLLSFLAALHGLHAVLSLLTAHPLHFACLFGLLQALVLAVSLREPNGDEAATDWESEGLEREGEEQRGDPGKGL", "sequence_length": 294, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c98d3c8e5709948bb09f857e3dc0efb9ae70af94a5672a0a3bbcc44cd320203e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O95873.json", "taxon_id": "9606", "uniprot_accession": "O95873", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4661-pf15576.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15576", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4661-pf15576.yaml" } ], "pfam_ids": [ "PF15576" ], "protein_name": "Uncharacterized protein C6orf47 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFLRRLGGWLPRPWGRKKSTKTDLPAPEPRWVDSSPENSGSDWDSAPETMGDVGPLKTKDSGTRRPPQAAPESSRDTRVYQLGSKRMDSLKKDKAASAIQESARLETGGAVPKLDLDPVDSGGMKNLGVSPQGRLGTTGPEALLEKPGRRQKLLRWLRGEPGAPSHYLQDPEEYLQISTNLTLHLLELLASALLALCSRPLRAILDALGLRGPVGLWLHGLLCFLAALHGLHAVLSLLTAHPLHFACLFGLLQALVLAVSLREPVEDEETADWESEGQGKEAKEQTEGPGRAL", "sequence_length": 293, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e2aa3a02015aee6eb5e87f17ff16cb9d2f5baaee6b444856f81f23b4ddae53c9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6MG51.json", "taxon_id": "10116", "uniprot_accession": "Q6MG51", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4661-pf15576.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15576", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4661-pf15576.yaml" } ], "pfam_ids": [ "PF15576" ], "protein_name": "Uncharacterized protein C6orf47 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFLRRLGGWLPRPWGRKKSTKADLPAPEPRWVDSSPENSGSDWDSAPETMGDVGPLKTKDSGTRRPPGAAPESSRDLKVDQLGSKRMDSLKRDKTASTIQEPARLESGGAIPKLDWDPVDSGGVKNLGVSAQGRLGTIGPEALLEKPGRRQKLLRWLRGEPGAPSHYLQDPEEYLQISTNLTLHLLELLATALLALCSRPLRAILDALGLRGPVGLWLHGLLCFLAALHGLHAVLSLLTAHPLHFACLFGLLQALVLAVSLREPVEDEETADWESEGQEREAKEQREGPGRML", "sequence_length": 293, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e521e7534d054271b42c3cff1d48c425635ae1a9bddc467f5df73681c2a343b2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z1R4.json", "taxon_id": "10090", "uniprot_accession": "Q9Z1R4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15576", "short_name": "DUF4661", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4662-pf15578.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15578", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4662-pf15578.yaml" } ], "pfam_ids": [ "PF15578" ], "protein_name": "Uncharacterized protein C22orf31", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHPINVRRDPSIPIYGLRQSILLNTRLQDCYVDSPALTNIWMARTCAKQNINAPAPATTSSWEVVRNPLIASSFSLVKLVLRRQLKNKCCPPPCKFGEGKLSKRLKHKDDSVMKATQQARKRNFISSKSKQPAGHRRPAGGIRESKESSKEKKLTVRQDLEDRYAEHVAATQALPQDSGTAAWKGRVLLPETQKRQQLSEDTLTIHGLPTEGYQALYHAVVEPMLWNPSGTPKRYSLELGKAIKQKLWEALCSQGAISEGAQRDRFPGRKQPGVHEEPVLKKWPKLKSKK", "sequence_length": 290, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "55ba8a53fae64d106c7723f78fe7691a62587293befec619cf557d1cbbdbb983", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O95567.json", "taxon_id": "9606", "uniprot_accession": "O95567", "uniprot_release": "2026_03" } ], "pfam_id": "PF15578", "short_name": "DUF4662", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4663-pf15668.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4663-pf15668.yaml" } ], "pfam_ids": [ "PF15668" ], "protein_name": "Uncharacterized protein C11orf42", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLVGTPNLLTLDEADATWTLIKDKVIEEHFGPNAVAVPFLSDAACYDLLGVLVKQSRPAHTRLALPGRQGRRALKPVGPLPSLLEQAGSEGAFAHCTREYSPNGRAERAYEETRMLDGQPCKIRLHMGDLRKKVAFLLLPPGQVSLQQTLPWLRSTHSIYVIYQVFSCSWLQLGLTSTAREPQLLRLLRSLPVAFSCLKFSLQSKGVLGPQKPLTKDPLPHGANWVRPNLSIMPPLAPTSAPADTTEAADVPPPVPAPPTPPPQEGPEDKPTRFSYKGRNPFWRGPQILSENWLFSPRSPPPGAQGGGPRDPDGHSMSLPLLQGLSSEFDSDD", "sequence_length": 333, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1cc4ba48de273d42884b055bcb180934208e3ca70a9b0b0886360e47a2b8d3d1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N5U0.json", "taxon_id": "9606", "uniprot_accession": "Q8N5U0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15668", "short_name": "DUF4663", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ciart-pf15673.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15673", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ciart-pf15673.yaml" } ], "pfam_ids": [ "PF15673" ], "protein_name": "Circadian-associated transcriptional repressor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSPSSVSSYSSSSLSPSFSTSSVNSDFSFPSDNEREGKGTHELRPDTVGQRGGSRPSPGPIRCRHRPRVSSNQHTAPHLEQQGSEVKRSRDGEQETSLNTQGCTTEGDLLFAQKCKELQGFIRPLTDLLNGLKMGRFDRGLSSFQQSVAMDRIQRIVGVLQKPQMGERYLGTLLQVEGMLKTWFPHIAAQKSSSGGSRHQISKHFPSHHGDPGAASPAPLLEKMGQTQLGHLVLKPKQPWHLTGWPAMNLTWIHSTPICNPPLSSQGSASGHSPIGTGASIGVILVLQKGGQPFTHSAPGTPVPPTPLSPVVPGDLKKLPGEEPRCHSLPVTLPSDWSCILCPPVLPTTDREMTKGHPEPQMTSHPPVAPDPQP", "sequence_length": 375, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f046583a36cf8f9801f900bacdd70df3668053ef7cdd75e9158a52d789931157", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3TQ03.json", "taxon_id": "10090", "uniprot_accession": "Q3TQ03", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ciart-pf15673.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15673", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ciart-pf15673.yaml" } ], "pfam_ids": [ "PF15673" ], "protein_name": "Circadian-associated transcriptional repressor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSPSSVSSYSSYSLSSSFPTSPVNSDFGFPSDSEREDKGAHGPRPDTVGQRGGSRPSPGPIRCRHRSKVSGNQHTPSHPKQRGSASPMAGSGAKRSRDGELETSLNTQGCTTEGDLLFAQKCKELQGFIPPLTDLLNGLKMGRFERGLSSFQQSVAMDRIQRIVGVLQKPQMGERYLGTLLQVEGMLKTWFPQIAAQKSSLGGGKHQLTKHFPSHHSDSAASSPASPMEKMDQTQLGHLALKPKQPWHLTQWPAMNLTWIHTTPICNPPLSSPGTISFSHGPLGTGTGIGVILFLQHGVQPFTHSAPTTPVPPTTASPVIPGEPMKLSGEGPRCYSLPVTLPSDWSYTLSPPSLPTLARKMTIGHREQQRSHPPVAADAHLLNL", "sequence_length": 385, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a2fcbed629450dd93313d85edecb0a81ab88cbc54fdc73288d24928d6001ce1c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N365.json", "taxon_id": "9606", "uniprot_accession": "Q8N365", "uniprot_release": "2026_03" } ], "pfam_id": "PF15673", "short_name": "Ciart", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4665-pf15679.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15679", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4665-pf15679.yaml" } ], "pfam_ids": [ "PF15679" ], "protein_name": "Ribosomal biogenesis factor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKNKLRGPKSRNVFHIASQKNFKAKNKAKPVTTNLKKINIMNEEKVNRVNKAFVNVQKELAHFAKSISLEPLQKELIPQQRHESKPVNVDEATRLMALL", "sequence_length": 100, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1f29bb933d70224543a59eaa1bcc2fb38a2eb88ca69f99428de816e82150f88e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A8YXZ5.json", "taxon_id": "9913", "uniprot_accession": "A8YXZ5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4665-pf15679.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15679", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4665-pf15679.yaml" } ], "pfam_ids": [ "PF15679" ], "protein_name": "Ribosomal biogenesis factor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKNKLKGQKSRNVFHIASHKTFKAKNKAKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLSLKSVQKELKHHENEPANVDEATRLMAQL", "sequence_length": 97, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4a351da3df10ea0c18653b70382d83118a9fe8a1dde157a0f90b3d8da5958ffb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q0VG62.json", "taxon_id": "10090", "uniprot_accession": "Q0VG62", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4665-pf15679.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15679", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4665-pf15679.yaml" } ], "pfam_ids": [ "PF15679" ], "protein_name": "Ribosomal biogenesis factor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKNKLRGPKSRNVFHIASQKNFKAKNKAKPVTTNLKKINIMNEEKVNRVNKAFVNVQKELAHFAKSISLEPLQKELIPQQRHESKPVNVDEATRLMALL", "sequence_length": 100, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1f29bb933d70224543a59eaa1bcc2fb38a2eb88ca69f99428de816e82150f88e", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N0T1.json", "taxon_id": "9606", "uniprot_accession": "Q8N0T1", "uniprot_release": "2026_03" } ], "pfam_id": "PF15679", "short_name": "DUF4665", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4666-pf15697.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15697", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4666-pf15697.yaml" } ], "pfam_ids": [ "PF15697" ], "protein_name": "MAPK kinase substrate protein At1g80180", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGLQRSTISFRRQGSSGIVWDDRLIAELSQQAANDRKGETLQQDEQAKLITSEVQDQTTKPIAGEGLKPIRTDGGMERSRSNGGGAIRHHRNTGRVSPAVDPPSPRLSAFGCCSAFGKKQPGKKVNQRKRPAKRRSR", "sequence_length": 138, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e523d1a4ff365ad4a4f0ae38b105198cd15052c83f6b45ec6c853d53c3109556", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SSC1.json", "taxon_id": "3702", "uniprot_accession": "Q9SSC1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4666-pf15697.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15697", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4666-pf15697.yaml" } ], "pfam_ids": [ "PF15697" ], "protein_name": "Uncharacterized protein At1g15400", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGLQRSTISFRRQGSSGIVFDDRLIAELNKSGNNEQKDESQRDEQPKPMSESSEQVKPIDEKDKLRPIKTGGGAPGGIERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSCGCCSAFGKNPPGKKVNPRKRPPKRRSRRRIVTKKR", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dada29c8814e56cd5ef12d8e7b382590eb35773e03306a89da6f750ae8c7e805", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9XI29.json", "taxon_id": "3702", "uniprot_accession": "Q9XI29", "uniprot_release": "2026_03" } ], "pfam_id": "PF15697", "short_name": "DUF4666", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4667-pf15700.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15700", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4667-pf15700.yaml" } ], "pfam_ids": [ "PF15700" ], "protein_name": "Uncharacterized protein YNR014W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSTDIKPCAVNIPVSAHITFHYKSIADRSSSRSSSSSSCSSATSKACSPRGSSVGLPPALSTDNEIVETVLNVSAPVVADPTRPSLFKSNYTAASCLTSDPTSPSLLPSSRRNSVLPASDFHQCAHHKNFQRRASEPQLPSFDNRSSSEMKRSVSYAQHSMMFPISDQQEPQTSASPNDHSDPSCPCNRHHHRRNSVAVKFDKPLYERLET", "sequence_length": 212, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "85e6abe792044b7c8a9412f1b55b76001c2a5317b3bc834ec847d6a278b8fb14", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53719.json", "taxon_id": "559292", "uniprot_accession": "P53719", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4667-pf15700.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15700", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4667-pf15700.yaml" } ], "pfam_ids": [ "PF15700" ], "protein_name": "Uncharacterized protein YMR206W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSSSSNRPISAHLTIHYKAIQEEEGEDMRSGAGSGGHHDDYFLESNRSPTPNKKHEFIKTVLNINDNDSEFSESCSPREKLHNEGACNTDLFGDFMSKRQQRLSNSMNIYDLYQCVHNLSPSNNNHQFIARRFSDSHIPSLHHRQQQQKVTTKNFVQPTKDIQRIASYAADSDQRVKYLPNYHQSAPSTALSAAESKAAVPRKLPDRDSTQNYVLKLQLSSPNSQPMSPRTRPGYRPSCSSSNCSSSSSSSACSSVSISDPNNITAYETNNVNPQFPSNQPLDISSPCARHHHRRNSIAVKFDKALYKKTTG", "sequence_length": 313, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6ea64960dbed56cdf868e2dbfdfc3e7789b5572c8c430bc3a94a2bda1af3e8b7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q03695.json", "taxon_id": "559292", "uniprot_accession": "Q03695", "uniprot_release": "2026_03" } ], "pfam_id": "PF15700", "short_name": "DUF4667", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4668-pf15701.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15701", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4668-pf15701.yaml" } ], "pfam_ids": [ "PF15701" ], "protein_name": "Uncharacterized protein YLR036C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKEAELSATESQDEIPKSNSLLIIEKLTKAVCSLYFINCFMVPSVDNLIEKYPKAIIIKIIDMILGAVTISLVIIVFFLYRKNGHFKNENKTKPKRCSKVVCPSCAARKKYPKWFQLKYLLLVSMTAFSFYFCTKIRFFFKTDQTINLHRLSQLFRLQLGWICTTALLFYFYDALILHSGFIEGYRCVNGKGAMSEGKTGQLN", "sequence_length": 203, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cb59554f2a84e51401d3f685134479ae36055282873939c2ec09c7fa92db8da4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q07986.json", "taxon_id": "559292", "uniprot_accession": "Q07986", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4668-pf15701.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15701", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4668-pf15701.yaml" } ], "pfam_ids": [ "PF15701" ], "protein_name": "Uncharacterized membrane protein YPL257W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAHANERISDVSPSARGSSSESKYDKLCRVLFFIAITKSSFTPEHILYKHSIFTDKPILADIVTFMYAAFVSIGWFLIWGERAYRTQEMGQPPMYSNINYHLLSFKKRHPKKFTCALWLVFFLAYTVLTVLIWLVQLIFRKGNVFQMLLQLIILDIAIALVNVAIAFTFEIYLSQKAAIEIRDEGLNNLDTA", "sequence_length": 193, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d52a883ae6ff9c9447788c0340cb835e9c64ab58666a4b4b591b9952302e4bd8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q08974.json", "taxon_id": "559292", "uniprot_accession": "Q08974", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4668-pf15701.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15701", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4668-pf15701.yaml" } ], "pfam_ids": [ "PF15701" ], "protein_name": "Uncharacterized membrane protein YPR071W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQNGTEDKSNIPARSNDDVLPPLAVRLTMKVMRLIFIGKMFAYSFVPFPPFKLLTFDNTVGWFVAYSAIVSIWGFAVWMERGYRHKINLLPPRCTKIRCSRCNTRIRSPNWFKYKNWLYFFLLYVSLTTSNLIIQLASFMTEMSRRGISVPGTKDPGKRDYLGLIIPMRFIGAFIHYMTANLFKEYYLHNGPLEKNDRPSTDEKTSENETL", "sequence_length": 211, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d8fed77828065d0ed57386a779c39275f25481cd6b36d4fb00081947ab8882af", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12346.json", "taxon_id": "559292", "uniprot_accession": "Q12346", "uniprot_release": "2026_03" } ], "pfam_id": "PF15701", "short_name": "DUF4668", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mccd1-pf15707.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15707", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mccd1-pf15707.yaml" } ], "pfam_ids": [ "PF15707" ], "protein_name": "Mitochondrial coiled-coil domain protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLPLPWLSRYHFLRLLLPSWSLAPQGSHGCCSQNPKASMEEQTSSRGNGKMTSPPRGPGTHRTAELARAEELLEQQLELYQALLEGQEGAWEAQALVLKIQKLKEQMRRHQESLGGGA", "sequence_length": 119, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b56238437b4c9b5eae77555bd02bb76f54375ec3a590c74f44b995240698802c", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P59942.json", "taxon_id": "9606", "uniprot_accession": "P59942", "uniprot_release": "2026_03" } ], "pfam_id": "PF15707", "short_name": "MCCD1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4670-pf15709.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15709", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4670-pf15709.yaml" } ], "pfam_ids": [ "PF15709" ], "protein_name": "Uncharacterized protein KIAA2012 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFTLSLLSRGHGKLVQNKQKLEVYFEPEDYLNWKSPEDYILVRKPQDEGNADQHTWSLFLPKTFSTRKGALILYSEGLAISAWTPEERRKGPYRPKGRRKRPDLELHTLQDLKEAILAYGRRQREQDRAWQPYLHFRSQPESQGLRQIQPGYSAKRYLRGLLRTWPPGTINKLQCAGYIKDSVLLQDSQLNVPKNLRPQQDLSGVPLKYHLLPVFPPFWIQQGKSFGQGQQDLDEGEAGAGGQVDQGSVVKDRGIQGTCLPPLKKQPWQKDETQTEDTSKDNHHCIHTSKENHQEKAQQTSRRTLGHALFDHSWLLHDKSHTTFYYGGTFPNRKADLSDKQGTMKLHQGRSSHLFKEPPAERCLFPPVASAAGSEKNMPGDMKKKKAPKALKLPLISEEPPRVLDPLRSQLKASEPPAELFIFPVEIHYHSQHPPKGKAQRRGAPQPESAPETEEYTSSWRPPLKQVSLRGSRALRVHLPMDTDRDTLSPQEDVAPPQKGTSSPSLRKGKKSPESQRGPDSPRTSGRSSPTGPPCERPAGGALPAAGQAYESVSSNAGHGEEESSIQHLLKVNTESRTDLHMNLNETSPLTQKPENQGAQQSLEAAAQKTGEPQSCINKGLICSNRKEFYTRKLHLDMTPFLKASREEMDDHEEGGELRENHPDAQDPVRRNMTLDPLCASLAKHMQTPEADTVQKASKDYNVHHRHRGLSGHGPDSPEGLDPIDTSFLPRGKEGKTEPRLFNQKTSNNISNEMELIEKAKSRKRAKTDKSKAPKREKEGKLHEEAEAAVGKSKESKAEKKSQLISKGKKTGAKGKRTRKEGNLETAAELSGPDGINSKETKDRSGGGFFRSGSGVEDPWVSSKVEAPESQVSIDGRSSPTQTAAVPGNMEPEEDRSHEDPSKAFLVKREQEKASRDRLRAERAEMRRLEVERKRREQEEQRRLQQEQLERAERMKEELELEQQRRVEEIRLRKQRLEEERQWQEEEERRQWLQLQMAQERARQQQEEFRRKCQELQRKKQQEEAERAEAEKQRLKELEMQLAEEQKHLMEMAEEERLEYQRRKQEAEEKTRWEAEDRRQKEKEAARLAQEEAMKQAQDQARQKDALKKHLHFHQELHKEASGLQWTHNISRPWVYSYFHFLQIPRP", "sequence_length": 1147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f7c028df953aca7674977ffa0f2abb27b166aa19abb693a2714183e765627658", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A7YY35.json", "taxon_id": "9913", "uniprot_accession": "A7YY35", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4670-pf15709.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15709", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4670-pf15709.yaml" } ], "pfam_ids": [ "PF15709" ], "protein_name": "Uncharacterized protein KIAA2012", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFTLSLLSRGHGKLGQDKQKLEVYFEPEDYLNWRSPEDYVPVSKPQDKNNASQHSWSLFLPKTFSTRKGALILYSEGFAISAWTPKERRKGPYCPRGPWRKLDLELHTLQDLKEAILAYGRQQGEQDRAWQPYLHFRSQLESQAQRQIQPGHSAKRYLRGLLRTWPPDAMYRLWCAGYIKDSVLLQDSQLNVPKKLRPQQDLSGVPPKYHLLPVFPSFWIQQGKSFEQRQQGLDEGEAGAAGHVDQGPLAKNHGSQGTRLPPRRKQPWQEDETQAEDTSIENHLCLYASKESYNEKTQQTSRKAFGHGRIDHSWLPSDKSHITFCGGAFPNRKADLSDKQRNVKLHKARSSHLLQVLPAERSLFPPVASATGSRIITPGEVKKKKAPKALKLPPISEEPPRVLEPLKSQFKANEPPTELFILPVEIHYHTKQPPKEKAHRRGAPHPESEPESSEESTPVWRPPLKHASLETPWELTVHLPVDASRDTLSPQGSSSLPPASLGNLTLKGSKARHTRVHSQGKGVWKGDDDAPPHDVAPPLDLLPPIKGKKSPESQKGVDSPRTSDHNSPPSLPNMRVPRRALPAAQEDSSDPTLGHFLLGPDGEKVCLSLPGHTQTEALPSGKAYESVNSNISHEEEGPSSQHFLKANTEPRANLHMNLYETSPLTQTTEKQGAQQSLEAAAQKTGEPQSCINKALICSNRKEFYTRKLHIDMTPFLKESGNALDYQEEAGRPLRETHHNDQDPEPRSMTLDSPRASRTEHIQTPEADIVQKVGRDYDVHHLHRGLLGYGPESPERLSAVYTSLLPREREGKAEPRLFSQETSANISHERDLINEAKRKEKPKKDKTKGPKSEREGKVYGQAEAAIGKSKDSKAKKKLEKKTRPQRKRTQKERNLEIAAELSGPDVSYEETEDTSNRGSFASDSFVEDPWLSPKYDAQESQVSLDGRSSPSQIATVTGNMESKEERRCEDPSKALLTKREQEKASWDRLRAERAEMRWLEVEKKRREQEEQRQLQQEQLERAKKMEEELELEQQRRTEEIRLRKQRLQEEQQRQEEEERKQQLRLKAAQERARQQQEEFRRKLRELQRKKQQEEAERAEAEKQRQEELEMQLEEEQKHLMEMAEEERLEYQRRKQEAEEKARLEAEERRQKEEEAARLALEEATKQAQEQARYWIFGQQLP", "sequence_length": 1180, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "38581078cfa7b20872dda1dabecda787ef24dcc7681a0ce518d1913497d88db3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q0VF49.json", "taxon_id": "9606", "uniprot_accession": "Q0VF49", "uniprot_release": "2026_03" } ], "pfam_id": "PF15709", "short_name": "DUF4670", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/brme1-pf15710.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/brme1-pf15710.yaml" } ], "pfam_ids": [ "PF15710" ], "protein_name": "Break repair meiotic recombinase recruitment factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKRKKLRTSGEGLCPPKPLKNPRLGDFYGDPQSSMLGCLHHPEEPEGKLGPVPSTQQHGEEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMKDEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATELGDPTQADSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQNLERDLEGFRVSPQASVVLEHREIADDPLQEPGAQQGIPDTTSELAGQRDHLPHSADQGTWADSLAVELDFLLDSQIQDALDASDFEAPPEQLFPSGNKPGPCWPGPSSHANGDPVAVAKAQPRTFVGIQASEASRMEDATNVVRGLIVELSNLNRLIMGTHRDLEAFKRLNYRKTKLGGKAPLPYPSKGPGNIPRGDPPWREL", "sequence_length": 668, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "02df8b3bb9e44b33c56a24b5f19c081499a9635d77dc8b5ab55e9b623687fe52", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q0VDD7.json", "taxon_id": "9606", "uniprot_accession": "Q0VDD7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/brme1-pf15710.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/brme1-pf15710.yaml" } ], "pfam_ids": [ "PF15710" ], "protein_name": "Break repair meiotic recombinase recruitment factor 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKKKQRNSGVGLHPSKPSKNPRLRDSQSSMMVHSHYSRESEDSSEPAPSVELGGEEPLHEAFSCPVEDTGAASDLAGSPKELVPLPPSQNSVGKFVPQFAKPRKTVTRKAKAWEEDLEGCTTSQETRPELGALKAASQPQRESLRFPPHDIRPEVQTQPDGTLSKERTISLDNRSLGNNGFEMATVQDSSSPLSDAAAEGREADSRDPQERDAQGGEAGAQHSGEPQEGEDILYTSALAPASEPTWSVAQDLSVPTYTLSSTAAAPSSTSPADASLMDTVITEVSLDPSVLQQSAPQVAKLLGSLDEQIPDGGCIGTLLSSTPLAEETTAGREEARWEERCHGDTLASFTETEPEKQEPVTEAGDSGHIAQEMDPVVKTKDSGSDEQSPGDIGMLPLPAQSMNQMLVELRGLTCDQDLEGLSTPHTSSQLEHTCAASDPPQSTKDCHSSPGIPVHLAAPCPRDQAAWQESSAMELDFLPDSQIQDALDATNMEQGFPSGSMPDLGWPVPSSQSIGGSPKAVTKPQSRSHVETWAQETYRMQDATDTVRGLVVELSGLNRLIMSTHRDLEAFKRRKTKSLPYLTKGLGSLPRGDQSWRDL", "sequence_length": 600, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "26b7babd534c9f6599c185c64f84ba9a60bbf996f42c1676888e22032572f85b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6DIA7.json", "taxon_id": "10090", "uniprot_accession": "Q6DIA7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15710", "short_name": "Brme1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4672-pf15716.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15716", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4672-pf15716.yaml" } ], "pfam_ids": [ "PF15716" ], "protein_name": "Uncharacterized protein NECTIN3-AS1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPVQRRKLDPLLKKYRHHKKATRTKRRRKEKMEAQCSPVPPTPSTPPQSEEDEAVDKKPTLLSAQEDTPDLLHEDRLQYLQEEGSGVMHQECQIQSCELSVAQKPRPSSPAVTSLASPPLCFGSFLSCVCQTFSRSRKQKPPRRKGNNQAEAGGDAEVLRPGPAKPELSLSKTCSHLKLIELSFVFSFIVLSVCHCSS", "sequence_length": 199, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dfe6de500307dbdf02c1c375d1fb008e8df617d2887f1ead25c909947380700a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1RN00.json", "taxon_id": "9606", "uniprot_accession": "Q1RN00", "uniprot_release": "2026_03" } ], "pfam_id": "PF15716", "short_name": "DUF4672", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cytosolic-ciliogenesis-go0061824.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0061824", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cytosolic-ciliogenesis-go0061824.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mnr-pf15718.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15718", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mnr-pf15718.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q2KHM9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15718" ], "protein_name": "Protein moonraker", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "da4e31591402202a6b18c5a52370507627af58264a25398c12e5c51db2f20e56", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MGPGQPASTCVHLAPRTQLDGRSDPKVLQTQNQLQFNRNVPTHSSNLAIRYSCPHAIRIEKLKHSYNESYHCKDADCRVGPDLGSSVSFSVISQERLSYAVHLARRDVKRRQFEKHIKEHHLRSQPQSSQKCGHTKYKIPDHRVERKESKSQAACQCSHQPSKVEISSSGAKVYLYSSHPGQSDLTVPNSPPTHDPGLQPHPRIGDHKNISEQKSLLEVQRLQKELSSCIHKIEEVTKKDRLEEALDPDEERRIRIRRQEQAARSARMLYVLQQQVKEIQEELDKLSPHKIKHTKKSWAMSKLAAAHRGAIRALQMFVTQFTDRGEHPLPARCKELGSLIRQLSLCSVKLDADPSVPDVVIDILQQIEALESLLEKKLSPKKVKKCFSEIRSRFPIGSQKALERWPSTSPKGERRPLTAKDTFPQETSRPSVAKQLLADKYQPDTELPETQRLQSELDVLDADIVLEEGPFILDQSASFKDEVLAVAKTKAGKKKPVTENVPFRKKDTLAPARQQGLRKAERGRQSQPHSKSRVQQTTVSSRLKMNRQPVKDRKAPWIPPNPTSPPASPKCAAWLKVKTSPRDATKEPLQQEDPQEESHLTGAVEHEAARLAWLDAETSKRLKELEELKAKEIDSMQKQRLDWLDAETSRRTKELNELKAEEMYRLQQLSVSATHLADKVEEAVLDRLKPLLVKAQRVNSTTEANIHLKDGSSVNTAKAQPAQEVAAVDFESNNIRQLDDFLEDCASELWAVTHAKILGSETLATVEDSKDSPDLEIMMRRMEEMEKYQESVRQRYNKIAYADPRLWMQEENNDQKISAISEKPLSPHPIRITKTVDRKDPAVNIMLERPCNGNSLDESVGTEEGSEKREAPLLSLAEDSQQKEGRAPLFVPPGMQHSIGDYCSRFEQYLRIISHEAVGSFNPWLIAESFSEELVDEALGAVAAELQDMCEDYAEAVFTSEFLEAAT", "sequence_length": 967, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "da4e31591402202a6b18c5a52370507627af58264a25398c12e5c51db2f20e56", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q2KHM9.json", "taxon_id": "9606", "uniprot_accession": "Q2KHM9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mnr-pf15718.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15718", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mnr-pf15718.yaml" } ], "pfam_ids": [ "PF15718" ], "protein_name": "Protein moonraker", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGPSQPASTCVHLAPSLQLDAMSDPRNLQPQNQLQFNRNVPTNPRNLAVRYSCPHGIKIEKLKHSYNELNHGKDLDFKAGNELSSSVSFSVISEERLSYAVHLAKRDVKRRQFEEHVKDHLRSLPHSSHKGMHTKVERKDSKSQDVCHCSHQPSRVSLSSSGAKVYVYTSQPGRSDLTVPNSPPTHDPGLQLQPRIEENKNLWEQKGLLEVQRLQKELSGCIRKIEALTKKDRLEEALDPDEEHRIRVRRQEQAVRCARMLYVLQQQVKEIQEELDKLSPQKIKHTKKSWAVSRLAAAHRAAIRALQVFVTQFTDRGEHPVPARCRELGSLIRQLSLCSAKLDADPSVPDVVIDILQQIEALESLLEKKLSPKKAKKCFTEIRSRFPVGSQKILERWPTVLPKSERRHLVTKETFPQETSRPPVAKRLLAAMCQPDGELQRLESEPDVLDAHLLPEEAPRIEDNGTDFKDGTLTPAKPQAVRRKALTGSMPIRKKDTVESARPQQGLHIAERNRPNQPYSKSRLQQTTVSSRLKMNRQPMKDHRAPWIPPNPTSPPASPKCAAWMKVKYSPRDAAKEQSLQQEDIHKESQLRGDAEQEAARLSWPDAESSKRLKELEELEAKEMERKQKQRLNWLEAETSRRTKELDELKAEEMDRLQKLSVSATQLADKVEEAVLERLKPLLIKAQRVNSSVEANSHLKDRPSRHAAAAAQPAEQASDVPFESRNIPQLRDCLEDTAHELWARTQDKILGSETSARLGDSKDSPDLETMMLRMEEMEKYQETVRQRYNKIVYADPHLWMHEERNDQNTPAVSEGPLASHPIKITKTATQKCPAVNILLERPCNANSLDESVTTEEGSEKREAPLPLSREDLHQRKGQTPLSVPPRMRHSIGAYCSRFEQFLRIIAHEAIGSFNPWLIAESFSDELVDEALGAVAAELQDVCEDYAEAVFTSEFLEAAA", "sequence_length": 959, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3e35cb828bb3b008aa909d080059dd6ddd739063ed4089dc88fc0201849a5662", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6A000.json", "taxon_id": "10090", "uniprot_accession": "Q6A000", "uniprot_release": "2026_03" } ], "pfam_id": "PF15718", "short_name": "MNR", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rmp24-like-pf15719.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15719", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rmp24-like-pf15719.yaml" } ], "pfam_ids": [ "PF15719" ], "protein_name": "Ribonuclease MRP protein subunit p24", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRQKHYLEAAARGLHDSCPGQARYLLWAYTSSHDDKSTFEETCPYCFQLLVLDNSRVRLKPKARLTPKIQKLLNREARNYTLSFKEAKMVKKFKDSKSVLLITCKTCNRTVKHHGKSRSFVSTLKSNPATPTSKLSLKTPERRTANPNHDMSGSKGKSPASVFRTPTSGQSVSTCSSKNTSKTKKHFSQLKMLLSQNESQKIPKVDFRNFLSSLKGGLLK", "sequence_length": 220, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f80f8e2ceeddd2e7b08a8e57da3b51a348af64a3249be57236b030862fb5d766", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q32NC0.json", "taxon_id": "9606", "uniprot_accession": "Q32NC0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rmp24-like-pf15719.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15719", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rmp24-like-pf15719.yaml" } ], "pfam_ids": [ "PF15719" ], "protein_name": "Ribonuclease MRP protein subunit p24", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRQKYYIEAAARGLVGSCPGQARYLLWAYSSTHEDNSTFQETCPHCFQLLVLDNSRVRLKPKAKLTPKIQKLLNREARNDTLSFKEAKLLRKYKDSTSVLLITCRTCNRTVRHHGKSRSFLWALKSNAATAANKASPKTPKRTAPGSANLGQSTNGSKGKSPSLTIRTPTSGQSTPICSSRNGSKRKKHFSQLKALLSQSASDKNPKLDFRHFLSSL", "sequence_length": 217, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d85b18955e762cfcfef2a299d03ecc5149dcbd2c76cc1b7efae9b80ab6db62b4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5XFZ0.json", "taxon_id": "10090", "uniprot_accession": "Q5XFZ0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15719", "short_name": "Rmp24-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/pleckstrin-homology-domain-containing-family-g-member-7-pleckstrin-hom-cd13245.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd13245", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/pleckstrin-homology-domain-containing-family-g-member-7-pleckstrin-hom-cd13245.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4675-pf15720.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15720", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4675-pf15720.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q6ZR37", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00621", "PF15720" ], "protein_name": "Pleckstrin homology domain-containing family G member 7", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "cd7e000e4c329ff01979c62df57b3e87e1eee0172a6b3d4428575a503bfee96d", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEKTESFCPEVPPQDCGASPRPSLRSLPKNQGSLLQFDRQAPGRISTSPTLRRLRTRGCGTRQDAWQVTTWGSWGAPVGFPCYLSKSLPGSPKDSSHLLSPLRLHSRLTSEPERALNAADSLEPQTRPTDKYLPPELQPVNEGSLHQASLRQQEGHFLPSPTLRHPSPQGEELHPSRFYEHRRSSVVLNLPGLEVFPGDLLVSDGAADYLCHPLLLLNSESKKPRWPFSKRGVGKDKHKHISDLENCLSSVKITSFRGYDFYGLKDKTWDEVLETHHKLPTDQLDLKKQQEAVWELFTSECTYFLDHLLVLKMIFMNTLRYLQTHEYLLDVDLWRLFANLEELTQTSLGFVNSLFGIIKDYVDASEISSSLDFISVLTKYFRGSLCQSHQTYCLNYSAAIFYLESLRQRDDFGIYLKWCEQNEQCRRLHVPELLVAPLQRLTRYPLLLKNIWKRSMDSAEKIMIYSIKEKVEKSIRDLEGKVKWLDNFQKFRYLQEIIVWPPLWDRDKRFFIPECLKHIFKEHMAENILSPTSRHLLYEGKLTLAESTRFLDVYLFLFNDFLLVTKTKCNKKKLGGSDPGLMCPSLTPELQAVIKEGGSCTVLDQPIPLDRLVVKSIEPLHVSVFGLRNAFLIQHENRYRQCIAAFLLQAQTENIKKTWMAQITTAISCFTKSQETKKISLFTLPAESSEI", "sequence_length": 691, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "cd7e000e4c329ff01979c62df57b3e87e1eee0172a6b3d4428575a503bfee96d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZR37.json", "taxon_id": "9606", "uniprot_accession": "Q6ZR37", "uniprot_release": "2026_03" } ], "pfam_id": "PF15720", "short_name": "DUF4675", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rcdg1-pf15725.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15725", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rcdg1-pf15725.yaml" } ], "pfam_ids": [ "PF15725" ], "protein_name": "Uncharacterized protein C4orf46 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADSEEFRASSPPPPPPSSPSSGASSSSLSMPVSLGWRDPSRSPGPTVDPLEQVELQIGDAAFSLTKLLEATSAVSAQVEELALKCTENARFLKTWRDLLKEGYDSLKPDN", "sequence_length": 111, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3cf736d077cf27e7e6820da5e5aec0ff7922a5f8bfcfa2ccde406413faed0f80", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UUX7.json", "taxon_id": "10090", "uniprot_accession": "Q3UUX7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rcdg1-pf15725.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15725", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rcdg1-pf15725.yaml" } ], "pfam_ids": [ "PF15725" ], "protein_name": "Renal cancer differentiation gene 1 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADPEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQIGDAAFSLTKLLEATSAVSAQVEELAFKCTENARFLKTWRDLLKEGYDSLKPDD", "sequence_length": 113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "10356d17dabcad81777a1660807f809b3627ad1d2edec3b2733400c2925d7d97", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q504U0.json", "taxon_id": "9606", "uniprot_accession": "Q504U0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15725", "short_name": "RCDG1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4677-pf15726.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15726", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4677-pf15726.yaml" } ], "pfam_ids": [ "PF15726" ], "protein_name": "Coiled-coil domain-containing protein 184", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEGLLEIMTKDGGDMPAPLEVSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRAMRGALDEQASHIQVLSDDVCANQRAIVSMCQIMTTAPRQGGLGVVGNKGNFPGARRDPETPSPGIGDSGLLGRDPEDEEDDDEEEKEMPSSATPTSHCELPESPCAGLLGGDGPLVEPLDLPDITLLQLEGEASL", "sequence_length": 195, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "980c2fea989f7ed8a0afa32b9ead0beca6b9846043a2693b4efead3d10d197ed", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0VC19.json", "taxon_id": "9913", "uniprot_accession": "Q0VC19", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4677-pf15726.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15726", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4677-pf15726.yaml" } ], "pfam_ids": [ "PF15726" ], "protein_name": "Coiled-coil domain-containing protein 184", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDGLLEIMTKDGGDMPAPLEVSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRAMRGALDEQASHIQVLSDDVCANQRAIVSMCQIMTTAPRQGGLGVVGGKGSFQSDPQEPETPSPGIGDSGLLGRDPEDEEEEEEEKEMPSPATPSSHCERPESPCAGLLGGDGPLVEPLDMPDITLLQLEGEASL", "sequence_length": 194, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f74a8a4aa8802846db0f2943af0151acc44615b3425ec856c39dedf37743bef5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q52MB2.json", "taxon_id": "9606", "uniprot_accession": "Q52MB2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4677-pf15726.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15726", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4677-pf15726.yaml" } ], "pfam_ids": [ "PF15726" ], "protein_name": "Coiled-coil domain-containing protein 184", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDSLLEIMTKDGGDMPAPLEVSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRAMRGALDEQASHIQVLSDDVCANQRAIVSMCQIMTTAPRQGGLGVAGGKGSFPSVPHEPETPSPGIEDSGLLGRDPDEDEDEEEKETPNPATPTSHCELSESPGLLGEDGPLVEPPDLPDITLLQLEGEASL", "sequence_length": 191, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5dd4cf1a00233c552e148df48c565eafa88c525674d92ab91ffebcf75f860d7d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BMK5.json", "taxon_id": "10090", "uniprot_accession": "Q8BMK5", "uniprot_release": "2026_03" } ], "pfam_id": "PF15726", "short_name": "DUF4677", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4678-pf15727.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15727", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4678-pf15727.yaml" } ], "pfam_ids": [ "PF15727" ], "protein_name": "Testis-expressed protein 44", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALPGYPLGNVDDSRSKDSPAGEPQGQVPLTADVLAVSSSVASTDWQDIDQASFKTATPRAISTSGDKDKSAVVPEHGQKTPRKITPLLPSQNPSPLQVSMSLQNPAWDRQVQDARTSQSLVVFPSHLLGKDKMSQMASVPEREPESAPSAPSAELQSTQHMEAQPVESDADHVTAGANGQHGPQAASTTKSAEEKAEHPKAPHPEAEALPSDESPVAMGANVVDSLGDLQTWFFPPPPAGSVSPSPGPHEVALGRRPLDSSLYTASEENSYMRSMTSLLDRGEGSISSLADILVWSETTMGMAIATGFLDSGHSTVADLLHSSGPSLRSVPSLVGSVSSAFSSGLVSGTSSALRTITRVLETVEQRTVEGIRSAMRYLTSHLTPRQAQADPNYD", "sequence_length": 395, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "def04a85eedc2a94543e04a36b9fd80e26ae0b5d851ed9e885b51d801a66c9ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q53QW1.json", "taxon_id": "9606", "uniprot_accession": "Q53QW1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4678-pf15727.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15727", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4678-pf15727.yaml" } ], "pfam_ids": [ "PF15727" ], "protein_name": "Testis-expressed protein 44", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTEPLEDPEANSNFVHGLPEASLGNKADENSEDLPGPSEGLDPLPDEVPPEDIVEARAEEDVDQASEANIIATEQDEEQASMQIATSMGQNKDRASMQTDTSTGRDAEPATSMTTSTSGVKEEIPGTPNPSQENLEELTSLLPQDPGILQMFVGFQNPVWDRLAENNRTSRSRTVSPSDSQTQEKTSGKSTVSEGQLEIASNADVPSVLPEDVQTSAGATDPPPSDTTGPEPEPTKSADQEAEDFKALNPESKVRSPKSTSEDLAADSGTPQAPPSPNSPADSPPPSPDSYQVSLGRSRLDPSLYGPEVENDYMRSMTSLLCGGEGSISSLTDILVWSDTATRMGVAMGILASGRSSPADRLQDEGPRLRTVASLFRSARSAFSSGVMAGTSSVLRSVTHLLESVERHTMEGIRSTMRYLNHFTLRWARTGSNSD", "sequence_length": 436, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "48a56f483930e8f0cc4a5494dc1bd3c57c35eea3c7f664bffefa732c84badac1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5U2Y8.json", "taxon_id": "10116", "uniprot_accession": "Q5U2Y8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4678-pf15727.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15727", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4678-pf15727.yaml" } ], "pfam_ids": [ "PF15727" ], "protein_name": "Testis-expressed protein 44", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAEPLEDPEASSSSTHDLPEASSDNTADENSADLPGESEGPDSLPDDVPPGDIDEVLAEHDVDQTSEAKAITTEQNEEQDFIRTDTFMRQDEDLLSKQISTITEKNVDQAYMQINTVFEQDKDQASIQTATLMGQDEDQAFLQIVTSVGQNKDQASIQTATLMGQDEDQASLQIATSVGQNKDQPSMQMDTSIGQDVEPAISTDTATSAVKDESPDIPHQGQDNPEETTSLLPQDPGILQVFVGFQNPVWDRLAENNRTSRSRTVSPSDSQTQEKTLGNPNVPEGQPVLVPNADVLSNLPEHVQTSVGAADPPPSDTSGRDPEPTPTTNSAKQEAEGFKALNPGSKARSPGLTSEDSAADSGIPPDPPDPGSPGGSPPHSPDFYQVALGRNLLDPNLYRPDVENDYMRSMTSLLGCGEGSISSLTDILVWSDTATRMGVAVGILASGCSSPADRLQDEGPRLRTVASLLRSARSAFSSGVMSGTGSALHSVTHLLESVERRTMEGIRSAMRYLAHHLTSRWARTGPSGN", "sequence_length": 530, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a1d05b538a24e420d6a0f1e5d585df7daccff47e5d03fcc56dfde199917b17dc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DA60.json", "taxon_id": "10090", "uniprot_accession": "Q9DA60", "uniprot_release": "2026_03" } ], "pfam_id": "PF15727", "short_name": "DUF4678", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Macaca fascicularis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4679-pf15728.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15728", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4679-pf15728.yaml" } ], "pfam_ids": [ "PF15728" ], "protein_name": "Proline-rich protein 30", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPQNKDQVLPQTSVLPGCPPWGFSQLVDSSPHNLQPLSAHQSLRPSHPPFFSTQSHHPSFSPPASPSPGFQFGSCDPNSDFVPHPCSPSLPSSPTFFHQNYLSLPNPRASSPSNHWLYPSPPLTPSFSPSQPQNSSLPHSPCQSPSHPEDLHSSTLTSPGPSPPSQRLHSNRQTWRWHQYRDTGSGSPGVVERCVPSEKDPAQFRDPGALAQALVVQLGHRRIAHDLRLLLLQHLWLGRTGQAPVVEYPICLVCLRPRSPSCPLPKYRTGPRLLAFPQLLPCVEGQESGPLRIGIGFGLRLPQGQARALHLLPEKRPKEVGPQGKDPQACGHPSPAFQPPAAQARADPAPGTPSQTRSFRSAGLQSPNSPRCFSGPPPRAPKQATTSPKPRPCPAPKRPVSLELILQKSSV", "sequence_length": 412, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1e4c40b08eb0001ff2938bb4df6281216841260b259247b324a0b52a23809656", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4R8E6.json", "taxon_id": "9541", "uniprot_accession": "Q4R8E6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4679-pf15728.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15728", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4679-pf15728.yaml" } ], "pfam_ids": [ "PF15728" ], "protein_name": "Proline-rich protein 30", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPQNKDQVLPQTSVLPGRPTWGFSQLVDSSPHNLQPLSPHQGLPPSQPPFSSTQSRRPSSPPPASPSPGFQFGSCDSNSDFAPHPYSPSLPSSPTFFHQNYLSLPRPRASSPSNHWLYPSPPLTPSFSPSQPQNSSLPHSPCQSPSHPEELHSSTLTSPGPSPPSHRLHSNRQTWRWHQYRDTGSGSPGVVERCVPSEKDPAQFRDPGALAQALVVQLGHRRIAHDLRLLLLQHLWLGRTGQAPVVEYPICLVCLRPRSPSCPLPRYRTGPRLLAFPQLLPCVQGQESGPLRIGIGFGLRLPQGQARALHLLPEKRPKEAGPQGKATQACGHQLPASQPPAAQARADPVPGTPSQTRSFRSAGLQSPNSPRCFSGPPPRAPKQVTTSLKPRPCPGPKRPVSLELILQKSSV", "sequence_length": 412, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "757c85e5208c7c2692d453d7d8eeee078fef22980cab380895513507d1491184", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q53SZ7.json", "taxon_id": "9606", "uniprot_accession": "Q53SZ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4679-pf15728.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15728", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4679-pf15728.yaml" } ], "pfam_ids": [ "PF15728" ], "protein_name": "Proline-rich protein 30", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPVNKDQVLLQNTVPPGCPPQVLSQFVNSPAPNLASLCPHPTLPSSHFPLPAPPQAYFFSSLTQTHSPGPHFSSDSNSDFVPPHSSSHPRSSSCFGQNYTYFGEKLPSPHSISPSNYQLCVSPPLTGSSSLSQLQHSSPHSCQSPSRLQDLQSPKITSPVPSSPSPRIQNNKQTWQWPQSGSIKSSRGAGVCVPSKVDPAEFKDSGTLTQALVDHVGRRRIARDLQIQFLQRLWLGTPGHAPVVEYPICLVCLQIRTPSCPTPKYKTVPQLLAFPQLLPCVQGQESGPLRIGIGFGLRLPRGQARALHLLPPKNSTPVGVESQEEALQRQKSTIQESVQITGTLFQARSLRSIDLQSPKPSQCSRSLLQEPRQVAASPKAGPSVSKRSVTLGSILRKSPS", "sequence_length": 401, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cc0d1678db17f7a059e377d6ff695fc264b732d1f4a3b0bb0699c7cba2c6ac23", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D9B7.json", "taxon_id": "10090", "uniprot_accession": "Q9D9B7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15728", "short_name": "DUF4679", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4680-pf15730.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15730", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4680-pf15730.yaml" } ], "pfam_ids": [ "PF15730" ], "protein_name": "Uncharacterized protein C5orf47 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVPSRSGQRPDGPRLIYVTRFASHRHGVWQLRGLRGFGHRGPGLGARCASKQAAVEPGARGGERPTGSQAGVTDTPDSAPFQRRSRAPRAREQAAQAGLNQKNAAKEFDFPIPLNEASKLMKERKKASVWSKVQQVISRMIAENESYRRRLQCQRVSSEIRVAAR", "sequence_length": 165, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a8b31d47ebc597963c28e5765347a4c986e27b82f34cfe6290bd54be3a193661", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q24JP4.json", "taxon_id": "10090", "uniprot_accession": "Q24JP4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4680-pf15730.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15730", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4680-pf15730.yaml" } ], "pfam_ids": [ "PF15730" ], "protein_name": "Uncharacterized protein C5orf47", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAGRGREQDSARFVYVTRFGSHQCSGVLQLGGRGAQGLWGQGPGAGCRQEKPREAMAVAGVQGGSELPLGSQLRVPTTPGVEAAASASSQLRASRVQSGTRQSARAGLIQKDAAKKYDFPIPLNEASKIMKKKKKVLVWNRVYKVISRMLEENEKYRHRLKCQRLSSESSNYTR", "sequence_length": 176, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2b3a594f04295affd845cb200f814b4ca450329352b39e62ead941bee700cd0d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q569G3.json", "taxon_id": "9606", "uniprot_accession": "Q569G3", "uniprot_release": "2026_03" } ], "pfam_id": "PF15730", "short_name": "DUF4680", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4681-pf15732.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15732", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4681-pf15732.yaml" } ], "pfam_ids": [ "PF15732" ], "protein_name": "Uncharacterized protein C12orf54 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQHAFQDQEQEEGRNSRQQKRKSFEDTMKPKAVELTITETLWDQVLMAFKDIQNELQEDARTRGMSSVTPTSSASKIGTKTSDAATTPKLGRLLSGTGEQPSGIQAQNLRGQSSDQSACYPQP", "sequence_length": 124, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ae86fab2e4732d16d8b9998e67ea3365ac1aa8f6f0ac5b1dfb1d6e2219a706c7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3SZX7.json", "taxon_id": "9913", "uniprot_accession": "Q3SZX7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4681-pf15732.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15732", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4681-pf15732.yaml" } ], "pfam_ids": [ "PF15732" ], "protein_name": "Uncharacterized protein C12orf54", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQHPCQDQEQKVEMTSKQQRSTSIEETMRPQEKQVTITETLWDQVLTVFKDIQKELQEDARIRGMSNCSMTPMTSAPRTGSIRPPDSLMTPKLRRLQFSSGEQPSGGRIHNLKTQLFSQSAYYPGP", "sequence_length": 127, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b24a862c98a9037d684b640c1b9bdbfc291fa6033c31ae3c278336d49dfca170", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6X4T0.json", "taxon_id": "9606", "uniprot_accession": "Q6X4T0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15732", "short_name": "DUF4681", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tbc1-domain-family-member-30-c-terminal-ipr032738.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tbc1-domain-family-member-30-c-terminal-ipr032738.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4682-pf15733.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15733", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4682-pf15733.yaml" } ], "pfam_ids": [ "PF15733" ], "protein_name": "Uncharacterized protein C9orf152", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGLPCPCPALPHFWQLRSHLMAEGSRTQAPGKGPPLSIQFLRAQYEGLKRQQRTQAHLLVLPKGGNTPAPAESMVNAVWINKERRSSLSLEEADSEVEGRLEEAAQGCLQAPKSPWHTHLEMHCLVQTSPQDTSHQVHHRGKLVGSDQRLPPEGDTHLFETNQMTQQGTGIPEAAQLPCQVGNTQTKAVESGLKFSTQCPLSIKNPHRSGKPAYYPFPQRKTPRISQAARNLGLYGSA", "sequence_length": 239, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5fbacdde127656575818613cb38a4c0283252eab8012326613ad5c1fe1d879f2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5JTZ5.json", "taxon_id": "9606", "uniprot_accession": "Q5JTZ5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tbc1-domain-family-member-30-c-terminal-ipr032738.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tbc1-domain-family-member-30-c-terminal-ipr032738.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4682-pf15733.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15733", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4682-pf15733.yaml" } ], "pfam_ids": [ "PF00566", "PF15733" ], "protein_name": "TBC1 domain family member 30", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRQDKLTGSLRRGGRCLKRQGGGGVGTILSNVLKKRSCISRTAPRLLCTLEPGVDTKLKFTLEPSLGQNGFQQWYDALKAVARLSTGIPKEWRRKVWLTLADHYLHSIAIDWDKTMRFTFNERSNPDDDSMGIQIVKDLHRTGCSSYCGQEAEQDRVVLKRVLLAYARWNKNVGYCQGFNILAALILEVMEGNEGDALKIMIYLIDKVLPESYFVNNLRALSVDMAVFRDLLRLKLPELSQHLDTLQRTANKESGGGYEPPLTNVFTMQWFLTLFATCLPNHTVLKIWDSVFFEGSEIILRVSLAIWAKLGEQIECCETADEFYGTMGRLTQEMLEQDLLQSHELMQTVYSMAPFPFPQLAELREKYTYNITPFPATIKPTSVSGRHSKARDSDDENGPDDEDAVASAVGCLGPLSGLLAPELQKYQKQIKEATEEQTLRSNNIAELSPGAINSCRSEYHAAFNSMMMERMTTDINALKRQYSRIKKKQQQQLHQVYIRADKGPVTSILPSQANSSPVINHLLLGKKMKITNRAAKNAVIHVPGHPGGKISPVPYEDIKTKLNSPWRTHIRVHKKNMPRTKSHLGCGDTVGLIEEQSEGCKASSLGAAEEFPSGRTVTAHSEGSSGDGDGGGSTPRTIEGQSPEPVFGDADVDVAAVQVKLEALELNQRDAAAETEPKVHFPCQRHASELADAPGENQTAIKLLPGSTSKTPIFSPFPSVKPLRKSATARNLGLYGPTERTPNVHFPQMSRGFNKSGIGNSSTKKR", "sequence_length": 766, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4a1b25045ebc844aaec095bb539c437de8b35ee072f8e9dd0e17818a6d22cbd5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q69ZT9.json", "taxon_id": "10090", "uniprot_accession": "Q69ZT9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tbc1-domain-family-member-30-c-terminal-ipr032738.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tbc1-domain-family-member-30-c-terminal-ipr032738.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4682-pf15733.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15733", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4682-pf15733.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9Y2I9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00566", "PF15733" ], "protein_name": "TBC1 domain family member 30", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "34486dd14429d088e98180c41adf1cb5e55ae17fb2af11ae1e79b1b7a151babb", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTEASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSAKLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRRVDTKLKFTLEPSLGQNGFQQWYDALKAVARLSTGIPKEWRRKVWLTLADHYLHSIAIDWDKTMRFTFNERSNPDDDSMGIQIVKDLHRTGCSSYCGQEAEQDRVVLKRVLLAYARWNKTVGYCQGFNILAALILEVMEGNEGDALKIMIYLIDKVLPESYFVNNLRALSVDMAVFRDLLRMKLPELSQHLDTLQRTANKESGGGYEPPLTNVFTMQWFLTLFATCLPNQTVLKIWDSVFFEGSEIILRVSLAIWAKLGEQIECCETADEFYSTMGRLTQEMLENDLLQSHELMQTVYSMAPFPFPQLAELREKYTYNITPFPATVKPTSVSGRHSKARDSDEENDPDDEDAVVNAVGCLGPFSGFLAPELQKYQKQIKEPNEEQSLRSNNIAELSPGAINSCRSEYHAAFNSMMMERMTTDINALKRQYSRIKKKQQQQVHQVYIRADKGPVTSILPSQVNSSPVINHLLLGKKMKMTNRAAKNAVIHIPGHTGGKISPVPYEDLKTKLNSPWRTHIRVHKKNMPRTKSHPGCGDTVGLIDEQNEASKTNGLGAAEAFPSGCTATAGREGSSPEGSTRRTIEGQSPEPVFGDADVDVSAVQAKLGALELNQRDAAAETELRVHPPCQRHCPEPPSAPEENKATSKAPQGSNSKTPIFSPFPSVKPLRKSATARNLGLYGPTERTPTVHFPQMSRSFSKPGGGNSGTKKR", "sequence_length": 924, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "34486dd14429d088e98180c41adf1cb5e55ae17fb2af11ae1e79b1b7a151babb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y2I9.json", "taxon_id": "9606", "uniprot_accession": "Q9Y2I9", "uniprot_release": "2026_03" } ], "pfam_id": "PF15733", "short_name": "DUF4682", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dna-pol-b-exo1-pf03104.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03104", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dna-pol-b-exo1-pf03104.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dna-pol-b-pf00136.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00136", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dna-pol-b-pf00136.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4683-pf15735.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15735", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4683-pf15735.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/dna-polymerase-b.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00116", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/dna-polymerase-b.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O60673", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00136", "PF03104", "PF14260", "PF15735", "PF24055", "PF24065" ], "protein_name": "DNA polymerase zeta catalytic subunit", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a0ddb38b36d416f29af943862de7cd84f376aca27ba1b26cbd084187b6781dd7", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": 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"sequence_length": 3130, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a0ddb38b36d416f29af943862de7cd84f376aca27ba1b26cbd084187b6781dd7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O60673.json", "taxon_id": "9606", "uniprot_accession": "O60673", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4683-ipr032757.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4683-ipr032757.yaml" } ], 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"MDNQQDKVIAASANGDNNLINGVKNNDSEDQEVAMKSFVALEATTPIQPIPVIQKESPMFPRGLLPPPSKKPCMQSPPSPLALIEAPDHSANSASVNAISLTSGVAKGLNTWSLPNECEKAPFAIMEPAGMSALNGDCLMQPSRTCLGCFMESKEAVDPEPGISLKVSDLNRDYETCAVSDIGIQCINAGENIKYGEQLLSDQLLGFPLHKSRAGDRRESEKPDIDLEDPTQKSYYEALLLDKCNTEEALLANSNQDWGYFETFISESKIELLDLCSKNELSVNLFSEEDVENYMFDDDESTLGSDVCSLKIRYESFQDNVRDKTTLLMQEDAQFNFFPSVFTTCPKRESKSGILKQSSDLSQFKVPDVSIIWGEEDKNLDKKKGKEEVHEDKSIETKDEKDNGEKPALNNKPCGGLEVEQFKNLKADQLTNSLETSGNFSDDSSFIEVSYDAMGEIKDCSRYMARDTNSGSSSSQQNYGLRAKRKVRYSEDYLYDVDSLEGEKVNERKEWPPGGSKEEDDDEWCPKKRRKVTRKEPPVIIKYIIINRFKGEKNMLVKLSKVDASETTVNLSENQLSKYAKLSPLKGFWQKKKKQKNSNTDSVKTPLCQKQSFEPGSFEVSFLPPARKRKSKLGNRHRIQRIQSVETSASSKQVSFCSDQKQACNRKEDGVKGTPKSALLTDPSCANGSHLRGLIVSDSVKVKAQDTEFKGPERKVLNKIKFKSEARLKSKKIKAGQENKPVVQMSPVSEDTSSKANLKNEVTPGTSNSSHMSEFHETKVKNSTFLPTTCSSEMPLSSANVATNIPVIPGGYLQTLLDASDLSNNTSISYFTNHSAEQNEGSLTQTEKAFVPLQSAQDCVLSSSSDSQLQQSSQNFKMEASNFGSLWPDKDTSGSQEFMTEVSREIATNQSSEFEASQVVSMENNLTAITYSPVCLNSDASGCNKVLYASLQDSHLPPEDLYQLCHFNNGEICFPFQQGPLSTDDDGRLFSFDSMTSLTVSSSNYCSLSLKSCEKDGDDEINDDFLAHCSPKLVIQQSIDEIAPLKESTDLLDISNFTPDKFRHSSLLEMSPPDTPSLSPQSTRCESIKTLGTMKGFQEGVPGSLSTVEKIKWDCNTLSQQAQADDGFTLNSHQFQFHMFNDEDSVGLLQKSPCLSTFDEPAGQINTNSKVSKSRKKTSPGKSGAVSQSSSQKNSRKKSPKASNKGVEKPPSKTSRQVPKSTKKGKYVAAVNGEKMQIGIGHSGGQPNSTSSNAKTLTECIQHGGPVASMKIPSQKGLSGDWALGKESRPGWNDMSVVTNTNNLLDDDQREFQEPSYILSNIASGMADVQRFMMASMEPLWEPMEHQGESNTFYSPDSNSLKLKTLKILAGTPQESKKKVTNGSSGATKNHRSVKAVSKSNGKAAIGEPGHADMPGSSEDSRSAFFDKKYSNVNTLGNNGPTHKKLYRHKSSSKGLRDEKYKGKRVEREQAHKDEAGTTSFEKLRDSNYNLLKAETAFGVLPVFEEETHIFQKDI", "sequence_length": 1515, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f912cc385fc2ded057c8050037a6204f3da119a8c0b6b0e578dd4b6ee379bd0e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q5DTT1.json", "taxon_id": "10090", "uniprot_accession": "Q5DTT1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4683-ipr032757.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4683-ipr032757.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4683-pf15735.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15735", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4683-pf15735.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5QGS0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15735" ], "protein_name": "Neurite extension and migration factor", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0f03f5dca260afa3acac4cf2a2ba0f1db008ca99d2dffdbd2c8198c9c31f134c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDNQQDKAIVASANGENTLINGVKENDSEDQDVAMKSFAALEAAAPIQPTPVAQKETLMYPRGLLPLPSKKPCMQSPPSPLGLIEAPEHAANSASVNAISLTSGIAKGLNTWSLPNECEKAPFAIMEPAGMSALNGDCLMQPSRTCLGCFMESKDAVDPEPGISLKVGDLNRDYETCAVSDIGIQCINAGENMKYGEQLLSDQLLGFPLHKSRAGDRRETEKPDIDLEDPAQKSYYEALLLDKCNTEEALLANSNQDWGYFETFISESKIELLDLCSKNELSVNLFSEEDVDNYMFDDDESTLGSDVCSLKIRYESFQDNVRDKTTLLMQEDAQFNFFPSVFTTCPKRESKSGALKQSSDFSQFKVPDVSIIWGEEDKNLDKKKGKEEGQEDKGVEKKDGKDNGEKPALNKPCSGTEVEQLKNPKQGHLANSLETSGSFSDDSSFIEISYDAMGEIKDCSRYMARDTNSGSSSSQQNYGLRAKRKVRYSEDYLYDVDSLEGEKVNERKEWLPVGSKEEDDDEWCPKKRRKVTRKEPPVIIKYIIINRFKGEKNMLVKLGKVDASETTVNLSENQLNKYAKLAPLKGFWQKKKKQRNTNTDSIKTPFSQKQSFEPGSFEVSFLPPARKRKSKLGNRHRIQRIPSIEISASSKQISLCNDQRHASNHKEDGGLKGTLKSAPLGAPSCANGSHLNDITGPDSVKVKAQDTEFKGPERKVLNKIKFKSEARLKSKKVKAAGQESKPIVQMSPLLENQSSKANLKNEVIPGTSNSSRLSEFHEAKAAKSSTFLPTTCSSEMPLSSANVTTNIPVIPGGYLQTLLDASDLSNNTSISYFSHHSPEQNEGSLTQTEKSFVPLQPTQDCVLTSSSDSELQQSSHNFKMESSNYRNVWPNKATSGTQEFMAEVSREIAPTQSSEFGASQVVSMENNLTPTTYNPICLNSGGSNCNKVLYDSMQDTQLPSDDSYQLCHFNNGEICFPFQQGPVNMDDGRLFSFDSMAPLSVSSSNYCSLSLKSCEKDGDDDITDDFLAHCSPKLVIQQSIDEIAPLKESTDLLDISNFTPDKFRHSSLSEMSPPDTPSLSPQITRCESMKTLGTLKGFQEGVPGPLDSVEKIKWDCSTLSRQVQMEDGFTLNNHQFQFHMFNDEDSVSLLQKNPCLSTFNDPSGQISTNNKVSKSRKKSSPSKSGAMNQSSSQKNTRKKSLKGNNKGIEKPPGKNSRQVPKSTKKGKYMAAINGEKMQIGIGRGGSQTNTISSTGKTLAECIQHGGPMASMKMPSQKGLSGDWALGKESSPGWSDMSMGTNTNSLLDDDQREFQEPSYILSNIASGMADVQRFMMASIEPLWEPMEHHGDPNIFYSPESNSLKLKTLKILAGTPQESKKKINSGSQGATKNHRSIKGVSKSNGKTAIGDPGRANMPGYNEDSRSTFFDKKYSNMSTLGNNGPTHKKLYRHKSSSKALRDEKCKGKHMEREQVHKDESGTASFEKLRDSDYNLLKAETTFWVLPVFEEETRIFQKDI", "sequence_length": 1516, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "0f03f5dca260afa3acac4cf2a2ba0f1db008ca99d2dffdbd2c8198c9c31f134c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5QGS0.json", "taxon_id": "9606", "uniprot_accession": "Q5QGS0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4683-ipr032757.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4683-ipr032757.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4683-pf15735.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15735", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4683-pf15735.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5TGY3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15735" ], "protein_name": "Transcription factor Gibbin", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "50cde421183b34983050e2ec6c4c173b296581d5ea3d3452b58f0623e47c4876", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRVKPQGLVVTSSAVCSSPDYLREPKYYPGGPPTPRPLLPTRPPASPPDKAFSTHAFSENPRPPPRRDPSTRRPPVLAKGDDPLPPRAARPVSQARCPTPVGDGSSSRRCWDNGRVNLRPVVQLIDIMKDLTRLSQDLQHSGVHLDCGGLRLSRPPAPPPGDLQYSFFSSPSLANSIRSPEERATPHAKSERPSHPLYEPEPEPRDSPQPGQGHSPGATAAATGLPPEPEPDSTDYSELADADILSELASLTCPEAQLLEAQALEPPSPEPEPQLLDPQPRFLDPQALEPLGEALELPPLQPLADPLGLPGLALQALDTLPDSLESQLLDPQALDPLPKLLDVPGRRLEPQQPLGHCPLAEPLRLDLCSPHGPPGPEGHPKYALRRTDRPKILCRRRKAGRGRKADAGPEGRLLPLPMPTGLVAALAEPPPPPPPPPPALPGPGPVSVPELKPESSQTPVVSTRKGKCRGVRRMVVKMAKIPVSLGRRNKTTYKVSSLSSSLSVEGKELGLRVSAEPTPLLKMKNNGRNVVVVFPPGEMPIILKRKRGRPPKNLLLGPGKPKEPAVVAAEAATVAAATMAMPEVKKRRRRKQKLASPQPSYAADANDSKAEYSDVLAKLAFLNRQSQCAGRCSPPRCWTPSEPESVHQAPDTQSISHFLHRVQGFRRRGGKAGGFGGRGGGHAAKSARCSFSDFFEGIGKKKKVVAVAAAGVGGPGLTELGHPRKRGRGEVDAVTGKPKRKRRSRKNGTLFPEQVPSGPGFGEAGAEWAGDKGGGWAPHHGHPGGQAGRNCGFQGTEARAFASTGLESGASGRGSYYSTGAPSGQTELSQERQNLFTGYFRSLLDSDDSSDLLDFALSASRPESRKASGTYAGPPTSALPAQRGLATFPSRGAKASPVAVGSSGAGADPSFQPVLSARQTFPPGRAASYGLTPAASDCRAAETFPKLVPPPSAMARSPTTHPPANTYLPQYGGYGAGQSVFAPTKPFTGQDCANSKDCSFAYGSGNSLPASPSSAHSAGYAPPPTGGPCLPPSKASFFSSSEGAPFSGSAPTPLRCDSRASTVSPGGYMVPKGTTASATSAASAASSSSSSFQPSPENCRQFAGASQWPFRQGYGGLDWASEAFSQLYNPSFDCHVSEPNVILDISNYTPQKVKQQTAVSETFSESSSDSTQFNQPVGGGGFRRANSEASSSEGQSSLSSLEKLMMDWNEASSAPGYNWNQSVLFQSSSKPGRGRRKKVDLFEASHLGFPTSASAAASGYPSKRSTGPRQPRGGRGGGACSAKKERGGAAAKAKFIPKPQPVNPLFQDSPDLGLDYYSGDSSMSPLPSQSRAFGVGERDPCDFIGPYSMNPSTPSDGTFGQGFHCDSPSLGAPELDGKHFPPLAHPPTVFDAGLQKAYSPTCSPTLGFKEELRPPPTKLAACEPLKHGLQGASLGHAAAAQAHLSCRDLPLGQPHYDSPSCKGTAYWYPPGSAARSPPYEGKVGTGLLADFLGRTEAACLSAPHLASPPATPKADKEPLEMARPPGPPRGPAAAAAGYGCPLLSDLTLSPVPRDSLLPLQDTAYRYPGFMPQAHPGLGGGPKSGFLGPMAEPHPEDTFTVTSL", "sequence_length": 1603, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "50cde421183b34983050e2ec6c4c173b296581d5ea3d3452b58f0623e47c4876", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5TGY3.json", "taxon_id": "9606", "uniprot_accession": "Q5TGY3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/promoter-enhancer-loop-anchoring-activity-go0140585.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0140585", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/promoter-enhancer-loop-anchoring-activity-go0140585.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/glycolipid-metabolic-process-go0006664.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0006664", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/glycolipid-metabolic-process-go0006664.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4683-ipr032757.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032757", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4683-ipr032757.yaml" } ], "pfam_ids": [ "PF15735" ], "protein_name": "Transcription factor Gibbin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRVKPQGLVVTSSAVCSSPDYLREPKYYPGGPPTPRPLLPTRPPASPPDKAFSTHTFSENPRPPPRRDPSSRRPPVLAKGDDLLPPRAARPVSQAHCPSPAPDNSSLRHWDNGRVNLRPVVQLIDIMKDLTRLSQDLQHSGVHLDCGGLRLSRPPAPPPGDLQYSFFSSPSLANSIRSPEERANPHTKSERPSHPLYEPEPEPRDSPQPGQGHGPGAAATATGLPPEPEPDGPDYSELADADILSELASLTCPEAQLLEAQALEPPSPQPEPQLLDPQPRFLDPQALEPLGEGLELPPLQPLADPLGLPSLTLQALDTLPDSLESQLLDPQALDPLPKLLDVPGRRLEPQQSLGHCQLAEPLRLDLCSPHGPPGPEGHPKYALRRTDRPKILCRRRKAGRGRKADSGPEGRLLPLPMPTGLAAALAEPPPLPPPPPPTLSGPGPVPELEPESSQTPMVPTRKGKCRGVRRMVVKMAKIPVSLGRRNKTTYKVSSLSSSLSVEGKELGLRVSSEPTPLLKMKNNGRNVVVVFPPGEMPIILKRKRGRPPKNLLLGPGKPKEPTVVAAEAATVTAATMAMPEVKKRRRRKQKLASPQPSYAADANDSKAEYSDVLAKLAFLNRQSQCAGRCSPPRCWTPSEPESVHQAPDTQSISQFLHRVQGFRRRGGKTGGFGGRGGGHAAKAARCSFSDFFEGIGKKKKVVAVAAPGLVGPGLTELGHPRKRGRGEVDAVTGKPKRKRRSRKNGTLFPEQVPSGPGFGEAGAEWVGDKGGGWAPHHGHPGGQAGRNCGFQGTEARAFASTGLESGASGRGSYYAGAPSGQTELSQERQNLFTGYFRSLLDSDDSSDLLDFALSASRPESRKASGTYAGPPSSALPAQRGLATFPSRGAKASPVAVGSSGAGADPSFQPVLPSRQTFPPGRATSYGITPATSDCRAAETFPKLAPPPSAVARSPTTHPPANTYPPQYGGYGAGQSVFASAKPFSGQDCANSKDCSFAYGSGNSLPASPSSAHSAGYAPPPTGGPCLPPSKASFFNSSEGGPFSGSAPTPLRCDSRASTVSPGGYMVPKGTTASAASVASSSSSSFQPSPENCRQFVGASQWPFRQGYGGLDWASEAFSQLYNPNFDCHGSEPNVILDISNYTPQKVKQQTAVSETFSESSSDSTQFSQPVGGGGFRRANSEASSSEGQSSLSSLEKLMMDWNEASSAPGYNWNQSVLFQSSSKPGRGRRKKVDLFEASHLGFSTSTSATASGYPSKRSTGPRQPRGGRGSGACSAKKERGGTAAKAKFIPKPQPVNPLFQDSPDLGLDYYSGDSSMSPLPSQSRAFGVGERDPCDFMGPYSMNPSTPSDGTFGQGFHCDSPSLGAAELDGKHFPPLAHPPTVFDAGLQKAYSPTCSPTLGFKEELRPPPSKLTACEPLKHGLQGASLSHAAQAHLSCRDLPLGQPHYDSPSCKGTAYWYPPGSAARSPPYEGKVGSGLLADFLGRTEAVCLSAPHLASPPATPKADKEPLEMARPPGPPRGPAAATAGYGCPLLSDLTLSPVPRDSLLPLQDTAYRYPGFMPQAHPGLGGGPKSGFLGPMAEPHPEDTFTVTSL", "sequence_length": 1594, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "acc3fc94760fe1fe0bb2cb00a07fbb90c7ad5384666a3e6ddd276b122c8ffa0d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PAL7.json", "taxon_id": "10090", "uniprot_accession": "Q6PAL7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15735", "short_name": "DUF4683", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4684-pf15736.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15736", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4684-pf15736.yaml" } ], "pfam_ids": [ "PF15736" ], "protein_name": "Uncharacterized protein C1orf167", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELRSDASHKENVSPKPAALPKPEQRRFRRSLGIGLSGRHDQWVPGCQVERGGPAATPSPGAVLDQEPCRVQTNLASPGPRLGLALKDTTGQLVNSSFWQQSNLQSLARRRQGKAREFAIQQSNLSINETSSPHLCPEPGGSSGPHKLPWGPLLSQEPLARPSSCLRQSGLPAPGTPSGDFRPTEAFAPLDGHTQPGLRSWGGLGSWRSRLVGEPLTLEDLAVPSQNQTQAPSRAAVHQLLASVHCLAQEAARLRCQAPQEPPGAVQQDLWTGGGQPFSAHPQPSQPVLASSDGRRRRLRGHRETAAFLETPASLSDSWAQSKLMSPETTLGTRTKDSLNPEQGLPPAHPLGSGDSCSPWSQDGRAQRGDPSLPRGVGSRGTDPCSSAFSNTAWGVSPKQKGEEGAPRERVHREEERTAFHLSDTVPASSASKNKAQNITAPESEAICWQLLSRCFRSWRHLVKRQREPAAAAVALGRWQLLRKCLQALWLREAQLEAAWGQYTKVLLVRSFREWRNLALQQKQVQPHMQAGPGSPPSRRAQGKGLSLGRSTVVDPAQRSRLEHTSPGSLREEEIAQRLLSHPRQRTDSRHERVQILQALQLAVFFLWCQQKKRARQERETLRKATRATQRTGSFPQAWHSTAAGVAWVAPLSPQHQRAWLCRCFGAWQQFVQRGSRYRDHLADRRTGTLRKCLEQWVRMKQLRESDGAKVTQLSLCRQKAGREAVYTAGPGACGLGAVGQAQGQQEQGRGSLQDACWTLALCWALLLWKMRLFQRQWANSFFQGLQQRMLQRSLRWWHLRALGPDATSSCTKTPSALEPLSSSTLQDSLEKVPRAPTLPDTLQGSLLWAAGQRQQGQCLLLWQARAQQFQGTARWYQHTRQRRIFLSWSRWATAQWAWRELASHRAWDRTCRAVLGLWRQRLLQSRLVEWWAQERGWRLARDALCHWHSCWQGQQFLHEKCQTWVQVHLQGLQKVVFRSWQQAAAHQRCTVTRPEQLLLQSYFQAWCEVVRDTGVLRAQHQAFQDGLRRRALGAVFATWREAQEVAAGAQEQRVAQASLARWRSCGQQGQEDGQQKKARAPQAFPAWPVAPGMHHEAQQQAGESAGAQAAQCWTWCWALWVHESCRGQVSRAHASWKPRAWVLEASVQSAVRGGVQRAILTQLRPAELRRFLRTVQLRVRLGLPGAGKTRSCWTQATELVPPAPSLQCSLGGRRKPRGTAWAQRCREHSLCPAFQLWPQWPGQSSWVPGLPLWTRDQGPRAHSSPEPRACKAQSKAHKRRLRARSCRILEKQAQAHGSALLLALKGHDALGHQEEVPAAPVPRGTASRAAGFPAGQVPGSGMAALGGCPRGRAAGADPAQGVAPEMGLADVVAADPATASGSAVTAAGRWAFKKWHQRLAARSPRRGAASSPRPWSKPGPKGPESGQEAARAPRGWGLGAEHGAQLQL", "sequence_length": 1449, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "471cdc8415b33716b5881ec8f785578d9d06e3e76692eb4ad6db1b1b862b8285", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q5SNV9.json", "taxon_id": "9606", "uniprot_accession": "Q5SNV9", "uniprot_release": "2026_03" } ], "pfam_id": "PF15736", "short_name": "DUF4684", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4685-ipr032756.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032756", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4685-ipr032756.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4685-pf15737.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15737", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4685-pf15737.yaml" } ], "pfam_ids": [ "PF15737" ], "protein_name": "Uncharacterized protein C9orf50", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFWRRLRPGAQDLAPKGLPGDGDFRRSSDPRLPKLTPPALRAALGARGSGDWRIPGGGAAWWPEGDAKPGVGVGRLPPRLPALLTATRRAVRKRGLLRSLLPPPLLSAGASRESAPRQPGPGERERPRRRVAREDPDFLGAFLGELLPSRFREFLHQLQEKCAEEPEPLTSPAPQHQRGVLEHCPGSPRCPNCSFLPDLWGQSSHLQDSLTKISLQQTPILGPLKGDHSQFTTVRKANHRPHGAQVPRLKAALTHNPSGEGSRPCRQRCPFRVRFADETLQDTTLRYWERRRSVQQSVIVNQKAALPVASERVFGSVGKRLESLPKALYPGAKEETLASSSCWDCAGLSTQKTQGYLSEDTSMNSSLPFCSWKKAAAQRPRSSLRAFLDPHRNLEQESLLPNRVLQSVLKQGCPKGYHLLLASATLQPDKR", "sequence_length": 431, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0686a231ba09aa69d1acfb24a71e1edbd7647f617faf117c5192f8b5160d7f80", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5SZB4.json", "taxon_id": "9606", "uniprot_accession": "Q5SZB4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4685-ipr032756.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032756", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4685-ipr032756.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4685-pf15737.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15737", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4685-pf15737.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5VZ46", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15737" ], "protein_name": "Uncharacterized protein KIAA1614", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "434dadcc5ce10bc43d57210f828a1fd786dbdc97cf8ac08b0cc63854c89c8647", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEGTEAAAAKPAGGSPQGPKTGSGTASPVEGTSAVEWSGPEPQLDNGHPPRPWPCPQENRTSSLMAPQPPRVWGVQLQGPSVLESKVRALKEKMTVAKQGVSPCSASQEWSSPKKPQCRRGKAGRAGTPSEGSFLPGAVVAPRTQNLPDGQLDGSINEEQPARDGGPRLPRPPAPGREYCNRGSPWPPEAEWTLPDHDRGPLLGPSSLQQSPIHGVTPGRPGGPGHCNKIIHIPSPRTGRSYPFPDGVVTEADLDSTSLTSEEVFVPRTALLGERWRAGDLEALGAGSSVLSLSDRVERNRLLLQEMLNVSGQSPRKVGTPAWTPSWDTAAPERPVGDVDWASGTSLQDSGQNRTVGPNPEPVLSPRHEEATHLLQRARMKARTRPLRASHDIVPTITQGSRDGHRSPARDPRTTPACRDSLQNGHTSDSSSGESSGGHRPRRGPSPSHVRFEDESAREAEFRHLERLQQRQRQVLSTVLQAADQGPLRSKPDLADYINGAPRLRDAGQGTFHRLVGSLDRRGHPAPPAPGSERRCQACGSCIDDPRPAQGKAPPVPRTLQELQAACGMERVLGGLSSPLRLLPAEPRLHMEWIRETHIGDTVCPAEVDSALDSTDNSDNCRTDSEEAGTSQAGWACGRTQGSSPRLRLRGSRPRGHRWSKKAEAELPWGLQAQQHLPRADDVEVENEVKEGRGHTPEGTLFLREDAKPPDLELKRVSLGPQWQPGPGLGSHQPHPLDSRTPCRTAYATTAPMTPESSGPGGQAQVTESHESLEIVSPSSLQQSHAEPSAPHQAWQPTASLCPEGWAPTPPPSRKTTSPVSHRKAALAGLLRLGDQTEPVGIPRPPSRSAVLRTCELPPSQTQPSRPQVRHPLLALSTNNCNNSAPRGLQEPYGGAVHEGRVERGPCSREPEPPLENSRDGGPQGFLGSADVATINSTGITLSLSSEESESSKESEGSLQRTGSGSGGHVLSRASAGAGTGPGSPSAAPLDQNKKRSSSIASTLGLKKLFSALGQSSRPKLGKSRSYSVEQLQPAPPGLTSQSRAPSLQSLHPVSPSHQRRKAASFQNLHSLLSSKGNRSSLYLVAGPGDHSAAGRPAKTSPRRALSVEDVGAPSLARTVGRLVEVFPDGTSQLQLQRSPGGTFGFCVASGNGRPDSGMPSPLPQPHGWGGLSKQGRAFWLWSEAFLVFG", "sequence_length": 1190, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "434dadcc5ce10bc43d57210f828a1fd786dbdc97cf8ac08b0cc63854c89c8647", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VZ46.json", "taxon_id": "9606", "uniprot_accession": "Q5VZ46", "uniprot_release": "2026_03" } ], "pfam_id": "PF15737", "short_name": "DUF4685", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4686-pf15742.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4686-pf15742.yaml" } ], "pfam_ids": [ "PF15742" ], "protein_name": "Coiled-coil domain-containing protein 30", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQEKNEMFESEWSKEREREKQLASGLDTAEKALKVESEELQKSKSELICLYNEVHNLPGESESKDHFLIACDLLQRENSELETKVLKLSQEFAQLNHFTLGGKTAPSNLITSENTCKDPESNEPILETEIQSRKEETEELCPKLGERKQKEIPEESVKEGSFPREGQKEEGSQQNRDMKDEEKEQQLTMKPEEIVRLREELSHINQSLLQSQSSGDSSDDSGAQHPSSGEKLKYNQQGEVQQLHQNLHRLQILCNSAENELRYERGQNLDLKQHNSLLQEENIKIKIELKHAQQKLLDSTKMCSSLTAEYKHCQQKIKELELEVLKHTQSIKSQNNLQEKLVQEKSKVADAEEKILDLQRKLEHAHKVCLTDTCISEKQQLEEKIKEATQNEAKVKQQYQEEQQKRKLLYQNVDELHRQVRTLQDKENLLEMTCSQQQSRIQQQEALLKQLENEKRKYDEHVKSNQELSEKLSKLQQEKEALREEYLRLLKLLNVHVRNYNEKHHQQKVKLQKVKYRLTNEVELRDKRINQFEDEIGILQHKIEKEKAIQDQITAQNDTLLLEKRKLQEQVIEQEQLIHSNKWTISSIQSRVLYMDKENKQLQENSLRLTQQIGFLERIIRSIHIRRGENLKEFPVPKWWHRGKLASLPPTKKQKEIYSTEVFTSNNAELQHEDESVPEATEKWKHSEQMETTISDILESEVVNEILPLSNSSFSGKGLVESFASLQETEEIKSKEAMASSKSPEKSPENLVCSQNSEAGYINVASLKETHGIQEQDQKSEL", "sequence_length": 783, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0940fb7520282124fe5f7c085b323421f67f60e6f690741580132322c239e271", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VVM6.json", "taxon_id": "9606", "uniprot_accession": "Q5VVM6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4686-pf15742.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4686-pf15742.yaml" } ], "pfam_ids": [ "PF15742" ], "protein_name": "Coiled-coil domain-containing protein 30", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCQEGLFRLALSSPRKQTACSLGERRTLAEALGLVDSTLESRRDPNSSLQKEFPQHQDEDQSRAAAPQDCLLRDVECIAQKLEASLEEIHRGAREPREEREQRTLGDALENARLEIEKLKDNLMKLKESGTTDLQRAREHNQRLDEEILALRNRVRSLDSEKKVLGEMYLTSGEKTSCQHQGELRELRQNLRRLQILCNSAEKELRYERGRSLDLKQHNSLLQEENIKIKIELKQAQEKLLDNARLHSSLTAEWKHCQQKVKELELEGLRQTQSLKSQQGLQEKLAREKSKAAEAQEKILDLQQKLDHGRQVCLSDVCILRKKQLEEEIKEAKSIEARLQQQCQEEQQRRILLDQDINELQTQVRALQDKEEQQEAVNSQQQEALRKQLERERRKCEEYVKSNQELSEKLSNLQQEKEALWQEHGRFLEQLGDHVRNYKDKHHCHKAKLQKVKDRLTHELEIRNKRIKELEDETGKLQQKIEMEKVFQGQIMAQNDILLLEKRKLLEQVTDQEELICSSKCTISAFQSKASLLDKENQQLQENCLRLMQQIGLLEQIIRSIQIRREEETVITDNAAFEILKKILPLQNSSFSGTGFVLSAENLQETELHKWEGAAAIPKSPEPLSRSQDSESGYINVTSLKETHNTQGDQKPEL", "sequence_length": 654, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "102f225d7b685b05e82ef8fa294f4e7358110b83812ca1aab92c77e7891faa76", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BVF4.json", "taxon_id": "10090", "uniprot_accession": "Q8BVF4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Macaca fascicularis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4686-pf15742.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4686-pf15742.yaml" } ], "pfam_ids": [ "PF15742" ], "protein_name": "Coiled-coil domain-containing protein 30", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQEKNEMFESEWSKEREREKQLASGLDTAEKALKAESEELQKSKSELICLYNEVHNLPGASESRDHFLIACDLLRRENSELETKVLKLSQEFAQLNHFTLRGKTAPSNLITSENICKDPESNEPVLEIEIQSPKEEREELCPKLGERKQKEIPEESVKEGSFPREGQKEEGSQQNQDMKDEEKEQRLTMKPEEVVRLREELSRINQSLLQSQSSGDSSDDSGAQYPSSGDKLKYNQQGEVQQLHQNLHRLQILCNSAENELRYERGKNLDLKQHNSLLQEENIKIKIELKHAQQKLLESTKMCSSLTAECKQSQQKIKELELEVLKQTQSIKSQNNLQEKLAQEKSKVADAEEKILDLQRKLEHAHKVCLTDTCISEKQQLEEKIKEATENEAKVKQQYQEEQQKRKLLYQNTDELHRQVRTLQDKENLLEMTCSQQQSRIQQQEALLKQLENEKRKYDEDVKSNQELSEKLSKLQQEKEALREEYLRLLKLLNVHVRNYNEKHQQHKIKLQKVKYRLTNEVELRDKRINEFEDEIGILQHKIEKKAIQDQITAQNDTLLLEKRKLQEQVIEQEQLIHSNKWTISSIQSRVLYMDKENKQLQEISLRLPATKKQKEIYSTEVCTCNNAELQHEDESVPKATEKWKHSEQMETTISDILESEVVNEILPLSNSSFSGKGLVESFVSLQETDDIKSKEAMASSKSPEKSPENLVCSQNSEAGYINVTSLKETHGIQEQDQKSEL", "sequence_length": 743, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e65fde9d96a3178cb6fc096abef0aa27ab99e8cdbd199830eed60f382a53de3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WP33.json", "taxon_id": "9541", "uniprot_accession": "Q8WP33", "uniprot_release": "2026_03" } ], "pfam_id": "PF15742", "short_name": "DUF4686", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4687-pf15747.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4687-pf15747.yaml" } ], "pfam_ids": [ "PF15747" ], "protein_name": "Uncharacterized protein C11orf71 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQNSVSLSAGDRRSRVAYLSSSHGDLSSSALALAMVSGDSFLVTRPEAILPEPVPRSSVRLNFRTESRRAPGGGRSPTRFNEGREMEARSRSRQARFSPYPGPAVKLDLLRSVLQQRLVALGGVIVARLSA", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a18fcbcf1c019f0a2e6b4dc26b2648a437ae0b0b9bcb6eddee82352c240f574d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q32L37.json", "taxon_id": "9913", "uniprot_accession": "Q32L37", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4687-pf15747.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4687-pf15747.yaml" } ], "pfam_ids": [ "PF15747" ], "protein_name": "Uncharacterized protein C11orf71", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALNNVSLSSGDQRSRVAYRSSHGDLRPRASALAMVSGDGFLVSRPEAIHLGPRQAVRPSVRAESRRVDGGGRSPREPDGRGRSRQARFSPYPIPAVEPDLLRSVLQQRLIALGGVIAARISV", "sequence_length": 123, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0c44974b64f3870e50efe354e9458539e128d0bd3b390731ec8c692270ad7d10", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6IPW1.json", "taxon_id": "9606", "uniprot_accession": "Q6IPW1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4687-pf15747.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4687-pf15747.yaml" } ], "pfam_ids": [ "PF15747" ], "protein_name": "Uncharacterized protein C11orf71 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQNSVSLSAGDQANRMAHRSSQGDLNPSAMAWAMVSGDSFLVTRLDPNQPGPRPPARPSVRADRRRVPVGGRSRSRSRQGRFSPYPIPGVKLDLLRSVLQQRLVALGTALATRISA", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a896785ad423e5f834fd428efb84bcfe8e38efaf527e874ab5b7bc942fe6846f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q91VN2.json", "taxon_id": "10090", "uniprot_accession": "Q91VN2", "uniprot_release": "2026_03" } ], "pfam_id": "PF15747", "short_name": "DUF4687", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-double-strand-break-repair-via-nonhomologous-end-joining-go2001032.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2001032", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-double-strand-break-repair-via-nonhomologous-end-joining-go2001032.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mrn-complex-interacting-protein-n-terminal-domain-ipr049472.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049472", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mrn-complex-interacting-protein-n-terminal-domain-ipr049472.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mrnip-pf15749.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15749", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mrnip-pf15749.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q6NTE8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15749" ], "protein_name": "MRN complex-interacting protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "31143664e6e10ebc4861cae4aa36230d83819d7da0eb940b6136a482edf91834", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MASLQRSRVLRCCSCRLFQAHQVKKSVKWTCKACGEKQSFLQAYGEGSGADCRRHVQKLNLLQGQVSELPLRSLEETVSASEEENVGHQQAGNVKQQEKSQPSESRWLKYLEKDSQELELEGTGVCFSKQPSSKMEEPGPRFSQDLPRKRKWSRSTVQPPCSRGVQDSGGSEVAWGPQKGQAGLTWKVKQGSSPCLQENSADCSAGELRGPGKELWSPIQQVTATSSKWAQFVLPPRKSSHVDSEQPRSLQRDPRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRATHPVTSGSERPCGKTSWDARTPWAEGGPLVLEAQNPRPTRLCDLFITGEDFDDDV", "sequence_length": 343, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "31143664e6e10ebc4861cae4aa36230d83819d7da0eb940b6136a482edf91834", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NTE8.json", "taxon_id": "9606", "uniprot_accession": "Q6NTE8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-double-strand-break-repair-via-nonhomologous-end-joining-go2001032.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2001032", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-double-strand-break-repair-via-nonhomologous-end-joining-go2001032.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mrn-complex-interacting-protein-n-terminal-domain-ipr049472.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049472", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mrn-complex-interacting-protein-n-terminal-domain-ipr049472.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mrnip-pf15749.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15749", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mrnip-pf15749.yaml" } ], "pfam_ids": [ "PF15749" ], "protein_name": "MRN complex-interacting protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAPAQQSRVLRCCSCHIFQAHQVKKSLKWTCKACGEKQSFVRAYGEGSGADCRRHVQKLNLLQGQVSELSLRSVEEAVNGSEEENAGPLQAEAGSQQAPSKPLESRWLKYLDKGCEDQELDRGRPALKTQLSTSAERPSSPAQPRKRKWNQRTGQPAHSLHGQGVDSVEDNFEHQDSTGLFGTEQQGTSPALSTANHTRELGFPRWKLPSPVTQVNAPSSKWARFLLAPGNSPQVDEKPSPLQEATMLADLAQGTVENKTPVEGHFSRAPAIRPPQAIHTTTPQLDRPDRKTREQPRDMGTPRADGRPLAQGTQKAPPLQLHNLFTTGEDFDDDL", "sequence_length": 335, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99036fc1a5929e339d2c036b0b5ddb21c922671f56f458e354fc1691e6a0f5cb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D1F5.json", "taxon_id": "10090", "uniprot_accession": "Q9D1F5", "uniprot_release": "2026_03" } ], "pfam_id": "PF15749", "short_name": "MRNIP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4688-pf15752.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15752", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4688-pf15752.yaml" } ], "pfam_ids": [ "PF15752" ], "protein_name": "Uncharacterized protein C1orf94", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRGGGGCVLALGGQRGFQKERRRMASGNGLPSSSALVAKGPCALGPFPRYIWIHQDTPQDSLDKTCHEIWKRVQGLPEASQPWTSMEQLSVPVVGTLRGNELSFQEEALELSSGKDEISLLVEQEFLSLTKEHSILVEESSGELEVPGSSPEGTRELAPCILAPPLVAGSNERPRASIIVGDKLLKQKVAMPVISSRQDCDSATSTVTDILCAAEVKSSKGTEDRGRILGDSNLQVSKLLSQFPLKSTETSKVPDNKNVLDKTRVTKDFLQDNLFSGPGPKEPTGLSPFLLLPPRPPPARPDKLPELPAQKRQLPVFAKICSKPKADPAVERHHLMEWSPGTKEPKKGQGSLFLSQWPQSQKDACGEEGCCDAVGTASLTLPPKKPTCPAEKNLLYEFLGATKNPSGQPRLRNKVEVDGPELKFNAPVTVADKNNPKYTGNVFTPHFPTAMTSATLNQPLWLNLNYPPPPVFTNHSTFLQYQGLYPQQAARMPYQQALHPQLGCYSQQVMPYNPQQMGQQIFRSSYTPLLSYIPFVQPNYPYPQRTPPKMSANPRDPPLMAGDGPQYLFPQGYGFGSTSGGPLMHSPYFSSSGNGINF", "sequence_length": 598, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c874fa9e2dd70dfb90cc6b3b9b705691233a14dd58a7635c107815edf8adade3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P1W5.json", "taxon_id": "9606", "uniprot_accession": "Q6P1W5", "uniprot_release": "2026_03" } ], "pfam_id": "PF15752", "short_name": "DUF4688", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4689-pf15755.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4689-pf15755.yaml" } ], "pfam_ids": [ "PF15755" ], "protein_name": "Transmembrane protein C16orf54 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPATPQQPSGHTEGLTEPTSEAAMWVVIPCGPCIPIMLGLASLTAFFIITTAVLAERLFRRPQPDPSQRAPTLVWRPGGELWIEPTSSARERSEDWYGSSIPLLMDRAPDPPTPGGTLEGRATAPPAIPTPHPSPSSLVPQTPPEVPAQSTFWRPQTQEESPYATGLVSWVGPEPMAEAGLEVGSPRAWRLRQGSLEPDWSLQPRVTLEQISAFWKREGRTSVGF", "sequence_length": 225, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a2f73a4f5078ecdffa47ee850c8c910373cc70fe8a32e84eed6407540d68c936", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5BK39.json", "taxon_id": "10116", "uniprot_accession": "Q5BK39", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4689-pf15755.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4689-pf15755.yaml" } ], "pfam_ids": [ "PF15755" ], "protein_name": "Transmembrane protein C16orf54", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLTPEPPSGRVEGPPAWEAAPWPSLPCGPCIPIMLVLATLAALFILTTAVLAERLFRRALRPDPSHRAPTLVWRPGGELWIEPMGTARERSEDWYGSAVPLLTDRAPEPPTQVGTLEARATAPPAPSAPNSAPSNLGPQTVLEVPARSTFWGPQPWEGRPPATGLVSWAEPEQRPEASVQFGSPQARRQRPGSPDPEWGLQPRVTLEQISAFWKREGRTSVGF", "sequence_length": 224, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4214104334eb2fcf5980597614f8f69cfb75377d0ad5beaac00a12d89a1cd366", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6UWD8.json", "taxon_id": "9606", "uniprot_accession": "Q6UWD8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4689-pf15755.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4689-pf15755.yaml" } ], "pfam_ids": [ "PF15755" ], "protein_name": "Transmembrane protein C16orf54 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPVTPQQPSGHTEGLPEPTAEAAVWVVIPCGPCIPIMLGLASLTAFFIITTAVLAERLFRRPQPDPSQRAPTLVWRPGGELWIEPTSSARERSEDWYGSSMPLLMDRAPGPPTPGGTLEGRATAPPATSAPYSSLSSLVPQTPPEVPAQSTFWRPQTQEERPHDTSLVSWVGSEPMPEAGLQVGSPRPWRPRQGSLEPDWGLQPRVTLEQISAFWKREGRTSVGF", "sequence_length": 225, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0fce0c612df1e16cc6d3c7552eb8a58a0cfce26b12a68aa6fd53517e0829e04a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C708.json", "taxon_id": "10090", "uniprot_accession": "Q8C708", "uniprot_release": "2026_03" } ], "pfam_id": "PF15755", "short_name": "DUF4689", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4690-pf15756.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15756", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4690-pf15756.yaml" } ], "pfam_ids": [ "PF15756" ], "protein_name": "Protein SNORC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASCLALRMALLLVSGVLAPAVLTDDVPQEPVPTLWNEPAELPSGEGPVESTSPGREPVDTGPPAPTVAPGPEDSTAQERLDQGGGSLGPGAIAAIVIAALLATCVVLALVVVALRKFSAS", "sequence_length": 121, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c3d192e927f3b66623a0acb5fc031376dd8981da61dd7fb4e78e619d39f18669", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6UX34.json", "taxon_id": "9606", "uniprot_accession": "Q6UX34", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4690-pf15756.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15756", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4690-pf15756.yaml" } ], "pfam_ids": [ "PF15756" ], "protein_name": "Protein SNORC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASCLALRVALLLISGVLAPAVLTAEGPQEPDPTLWNEPIELPSGEGPLESTSHNQEFAVSGPPFPTSAPAPEDSTPPARVDQDGGSLGPGAIAAIVIAALLATCVVLALVVVALRKFSAS", "sequence_length": 121, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f2f2b953fb78fa0701f6ec3b854e04d30c598017de2cd08cdeb4efdb9379281b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CXL7.json", "taxon_id": "10090", "uniprot_accession": "Q9CXL7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15756", "short_name": "DUF4690", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4691-pf15762.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15762", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4691-pf15762.yaml" } ], "pfam_ids": [ "PF15762" ], "protein_name": "Uncharacterized protein C16orf86 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASAGAKRQPEAQNGAAVGLAQVAEIPECPGTEECLVPAHETCSTPGEDRCPVGHSLEPELQEEGINLGEEGLNPGVEAGEERGPKPTSSIVRPAHGPKRKAEAELPPGLLLQKEEPEGSHSESSLSSKQHKKAKKRKSVGAPVPPAVASASAPTETLGLEPFAVPWVLAGKAQRLRPLYQYINYCNPELNQAGDGDREPEAEPESELALAPEEAGVEQLQLQTLLPMAGELGLGLALPCPNPLAPLTHNLPPLVEEVGEEPGGLSSLRVSGSLKAEVDKTTQVDIDKMLSVCAAPLVPPLSPQYK", "sequence_length": 306, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4e5e942b9851f4ee4c91fee57ca505808eb97f5cafe3aeb1e99440c4059c98c9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D3ZAQ5.json", "taxon_id": "10116", "uniprot_accession": "D3ZAQ5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4691-pf15762.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15762", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4691-pf15762.yaml" } ], "pfam_ids": [ "PF15762" ], "protein_name": "Uncharacterized protein C16orf86", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASAGAERRPGVQEATVVGQGQLTEEPGSAQTSECPVAGDQFLVPAHEARGTQSEDQRPAGAASESELQEEGPKLGEERPKPHAGALEERGPRPVVSIVRPRHGPKRKPVKSLSLPGLRAHLKAEAELPPKLPLQEEEPEDSQSEPSPSAKQHKKAKKRKSLGAPVLHAVASMVSAPLETLRLERKAQRLRPLYQYVNYCNPELNQAGKGDGEAEVEAEAELAPVPEEGGVEQLQALLPLAGELGPGLALPCPSPLVTPTHALAPLGEEAGEEPGGLPSLGVSDHKAEVDKSTQVDIDKMLSVCTAPLVPPLSPQYK", "sequence_length": 317, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3a0769c9595391326441a976c2b1a48af0adfa50ef509fc6503da2c9c2c235ec", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZW13.json", "taxon_id": "9606", "uniprot_accession": "Q6ZW13", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4691-pf15762.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15762", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4691-pf15762.yaml" } ], "pfam_ids": [ "PF15762" ], "protein_name": "Uncharacterized protein C16orf86 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASEGAKRQPETQNGAAVGLAQVAESLECPGTEECLVPAHETCRSPGEDKCPVGHSLEPELQEEGIKVGEEGLNAGVEAGEERGPKPTSSIVRPAHGPKRKSEVELPPGVLQKKEEPEGSHSESSLSSKQHKKAKKRKSGGAPVPPAVASASAPAAETLGLEPFALPWVLAGKAQRLRPLYQYINYCNPELNQEEDGDREPEVEPEAELALVPEEPGVEQLQLQTLLPVAGELGLGLALPCPNPLVPLTHNLPPLVEEVGEEPGGLSSLRVSGSLKAEVDKTTQVDIDKMLSVCAAPLVPPLSPQYK", "sequence_length": 307, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "090487e6f6729e78744cf986a6bcdb7b7e45227a0ea7eb0f0783f2a7773a1705", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D4A5.json", "taxon_id": "10090", "uniprot_accession": "Q9D4A5", "uniprot_release": "2026_03" } ], "pfam_id": "PF15762", "short_name": "DUF4691", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/erythropoietin-receptor-binding-go0005128.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0005128", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/erythropoietin-receptor-binding-go0005128.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cellular-response-to-erythropoietin-go0036018.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0036018", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cellular-response-to-erythropoietin-go0036018.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4692-pf15763.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15763", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4692-pf15763.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q6ZWK4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15763" ], "protein_name": "Regulator of hemoglobinization and erythroid cell expansion protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "db6ea04a47120a37ac74a1c65d8ac69629ee7331b9ca2ac3622e46c03e594fad", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLTEVMEVWHGLVIAVVSLFLQACFLTAINYLLSRHMAHKSEQILKAASLQVPRPSPGHHHPPAVKEMKETQTERDIPMSDSLYRHDSDTPSDSLDSSCSSPPACQATEDVDYTQVVFSDPGELKNDSPLDYENIKEITDYVNVNPERHKPSFWYFVNPALSEPAEYDQVAM", "sequence_length": 172, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "db6ea04a47120a37ac74a1c65d8ac69629ee7331b9ca2ac3622e46c03e594fad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZWK4.json", "taxon_id": "9606", "uniprot_accession": "Q6ZWK4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15763", "short_name": "DUF4692", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4693-pf15764.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15764", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4693-pf15764.yaml" } ], "pfam_ids": [ "PF15764" ], "protein_name": "Tubulin epsilon and delta complex protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPAECSRRLVAELRDALDSCAERQRQLEQSLRVSRRLLRVWEPAETPAPEPTPGSEINKEAPSSACPPSPQDLKELELLTQALEKAVRVRKGLSKAGEGVKARSLKSGSASTATKASAPPSTSRCTGSRAPETKPPRGVHHPWVPAKDLPGHRLLLVGDGAHMGQGAGANKPEAGLRDQQIVPQAASQVPEAFTLKDKGALLRLPEAFRKAASRNARLPMCASSLWAQLSSMQTRDSVDAAAATAKTQFLQKMQTAAGLPSSMLSAAEVGRLQKACSMLRLRMREELTADPKDWTQEYRSLLTLEGLQALAGQCLHRLQELQELRSAVVEQPQGPWPEGPPRAALPCGGGADPVWSPQLLLYSSTQELQTLAALRLRVAMLDQQVHLEKVLMAELLPLLSEQEPLGRPWLALCRAAHCLLCEGGQRFLTVLQDEPADRLSPP", "sequence_length": 443, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cde4391ca6ead1466e8fd3aa62858b97a72f278d7e3a599b9ae7ac46bde1c6f3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3ZBU3.json", "taxon_id": "9913", "uniprot_accession": "Q3ZBU3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4693-pf15764.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15764", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4693-pf15764.yaml" } ], "pfam_ids": [ "PF15764" ], "protein_name": "Tubulin epsilon and delta complex protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLGVKGNYLLPADCAHRLVAELQGALDSCADRQRQLERSLRVSRRLLQVWEPARTPSPVPETKEEDPSPACAPSSQDLEELELLTQALEKAVRVRKGVSNAGQRDRTPTLTSKAATSGAAAASHPRAPSRGGSRVLGTRSTKGIQRATAPPKDYPEHRLRSKGDKTHVRTQDQTTGYGPDLRDQQMTPSSAHHTTELFALKEKGTLLQLPEDFRKAVSRNSCLWAQLNSARTNDSTDATRAAKTQFLHKLQMASGCSSHRPSATEVEAHARILRKACMLLRLRMQKELAIAPTDWMQEYRCLLTLEGLQTVVGQCLHRIQVLQAAVTEQLPGECLAETRTQASSVCGGEVDSACSPELLLYASTEELQTLATLKLQVALLHQQIHLEKVLMAELLPLINTQDPGGPPWLALCRAAYSLLCEGGERFLTVLRDDPAD", "sequence_length": 436, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "667da038c0042ead2f36acde0baebba743d5a1a23e02e86823f75bc4b4ed6485", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6GQV0.json", "taxon_id": "10090", "uniprot_accession": "Q6GQV0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4693-pf15764.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15764", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4693-pf15764.yaml" } ], "pfam_ids": [ "PF15764" ], "protein_name": "Tubulin epsilon and delta complex protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPAGCSRRLVAELQGALDACAQRQLQLEQSLRVCRRLLHAWEPTGTRALKPPPGPETNGEDPLPACTPSPQDLKELEFLTQALEKAVRVRRGITKAGERDKAPSLKSRSIVTSSGTTASAPPHSPGQAGGHASDTRPTKGLRQTTVPAKGHPERRLLSVGDGTRVGMGARTPRPGAGLRDQQMAPSAAPQAPEAFTLKEKGHLLRLPAAFRKAASQNSSLWAQLSSTQTSDSTDAAAAKTQFLQNMQTASGGPQPRLSAVEVEAEAGRLRKACSLLRLRMREELSAAPMDWMQEYRCLLTLEGLQAMVGQCLHRLQELRAAVAEQPPRPCPVGRPPGASPSCGGRAEPAWSPQLLVYSSTQELQTLAALKLRVAVLDQQIHLEKVLMAELLPLVSAAQPQGPPWLALCRAVHSLLCEGGARVLTILRDEPAV", "sequence_length": 433, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "702282f7e9ea995c33384be28a3de1eee850d605776dfd9a9bc4e6eb69f5c31d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7L2K0.json", "taxon_id": "9606", "uniprot_accession": "Q7L2K0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15764", "short_name": "DUF4693", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4694-pf15765.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15765", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4694-pf15765.yaml" } ], "pfam_ids": [ "PF15765" ], "protein_name": "Protein TNT", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLVPGQHCSPSHTRLHLTSPITMGTEPATQNTEFSKGSLIYGVTSPQRGHSQHSEASQGPLSLDKPLQLPPIFLEGEKGESSVQNEQEGEPSLQSPSLELQSPAWPRHAGVAQEPLKVSSSYLSDTQSSESHVSSVQHPRPEEGSHASLSSGYAGDKEGSDISLVGSHRRVRLNRRLNTQAASNQTSQLGSIDPPSSLKSRLTGPAHSTKQTGGKE", "sequence_length": 217, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "314869d89cad59930475752aea30ed6af00970321db748e766635b06f08f6414", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Z2V1.json", "taxon_id": "9606", "uniprot_accession": "Q7Z2V1", "uniprot_release": "2026_03" } ], "pfam_id": "PF15765", "short_name": "DUF4694", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4695-pf15766.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15766", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4695-pf15766.yaml" } ], "pfam_ids": [ "PF15766" ], "protein_name": "Uncharacterized protein C11orf96 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFAVIRACSRVGRGGLYKRLGGLPRGTRRQRQRRQGASLSTTEQRSLAPRPPTGPPARYPSPAVPARASEARRHPAADLDPPPGEPQAVASRGTPEPRPPPESPGAQPPPGPAAADGAMAAAKPGELMGISSSYQAVMPHFVCLADEFPQPVRPAKLPKGKGRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEEKAKKSFLQSLECLRRSTQSLSLQREPLGSCKLRNSLDSSDSDSAL", "sequence_length": 242, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "39f033fa8e9fae49e3fa62953dd892151b1ed237dc8982e9f7d3bbb06c3ceb73", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8IHN8.json", "taxon_id": "10116", "uniprot_accession": "A8IHN8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4695-pf15766.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15766", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4695-pf15766.yaml" } ], "pfam_ids": [ "PF15766" ], "protein_name": "Uncharacterized protein C11orf96 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAFAVIRACSRVGRGGLYKRLGGPPRGTRRQRQRPRQGRQGASRSIAEQRSAAPRPPTGPPARYPSPAASARASEARRHPAADLDPPPGEPQAVASRGTPEPRPPPESPGAPPPPGSAPADGAMAAAKPGELMGICSSYQAVMPHFVCLTDEFPQPVRPAKLPKGKGRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEEKAKKSFLQSLECLRRSTQSLSLQREPLGSCKLRNSLDSSDSDSAL", "sequence_length": 246, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1df7f3f1806d09df18ef68a131d20554dc667b85548887571eefe1fcf8409b73", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UPL5.json", "taxon_id": "10090", "uniprot_accession": "Q3UPL5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4695-pf15766.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15766", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4695-pf15766.yaml" } ], "pfam_ids": [ "PF15766" ], "protein_name": "Uncharacterized protein C11orf96", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAKPGELMGICSSYQAVMPHFVCLADEFPQPVRPAKLPKGRGRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEEKAKKSFLQSLECLRRSTQSLSLQREQLSSCKLRNSLDSSDSDSAL", "sequence_length": 122, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7518d8a55d7b92081cebea21a26cd9ec3d0d7ed1ad42a57b89f6d3922401b8d3", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Z7L8.json", "taxon_id": "9606", "uniprot_accession": "Q7Z7L8", "uniprot_release": "2026_03" } ], "pfam_id": "PF15766", "short_name": "DUF4695", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/armh4-pf15767.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15767", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/armh4-pf15767.yaml" } ], "pfam_ids": [ "PF15767" ], "protein_name": "Armadillo-like helical domain-containing protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRPIVLHICLAFCSLLLLNFAAQCLAFPNLERREIVLLHAEKGQSERLNTDDLENDSVTSNTPVSGDPMIVLAGPSTMSLNKVFPSNKETSPVGAGLMQADGSNIYTATEPEVPAGEEVFGSSQPERMSPESRPSKATLTNPVMPTASLNIDEREEPSRGTIIQPTVEGTTEATQGFLSYVDDQLFATESPEGLSLGHSPLSLVNTKEMLTTSPRTEKFEANPEHKTTSFPGSKLTAGTEPSQMTADNTQATAATKHWLPTSESILSVEPETDSLLGAPEVTTSVSTAVAAAPVISDEWDDTKLESVSQIKTPKLGDNTETQVRMEISQTTQAPDIGMEVMEEGKALTEAADVSLKLPEMETHMETTLPMAHGGERASDQSSVTPTSPMGDTKVSVMNLVQDTADFVESTKENGAMFLETTVSISEYESEVHQPLGNRFKDIITQEMTTAVQAAEATVSLVTQEQQVATLEVTRGEDETKGGRELPSATVDAPRATQLSRRWEPLATVVSTTPIPVSFKVTPAVEDVMDTVTGPNEELFTPILGSPVTPPGITEEAPSTSPALADPEASSERRTAAPSFSYVNTAASYGLDQLESEEGEDDEDEEDEEEEDEEEEDEEEDEEDKDADSLDEALGDTELPGFTLPGITSQEPGLEQENVVSLEGVTFQVPDAIQWEQQNQGLVRSWMEKLKDKAGYMSGMLVPVGVGIAGALFILGALYSIKVMNRRRRNGFKRHKRKQREFNSMQDRVMLLADSSEDEF", "sequence_length": 760, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "37206daf46b5105026d20a5a3b3a53c7899d697ba78532525add31c15b8bde26", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2TA21.json", "taxon_id": "9913", "uniprot_accession": "Q2TA21", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-torc2-signaling-go1903939.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1903939", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-torc2-signaling-go1903939.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/armh4-pf15767.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15767", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/armh4-pf15767.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q86TY3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15767" ], "protein_name": "Armadillo-like helical domain-containing protein 4", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6c215eb98aa955a5643e52ac2c7004a76bdc1e910f799bb5911cadc434e86a8c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MRGPIVLHICLAFCSLLLFSVATQCLAFPKIERRREIAHVHAEKGQSDKMNTDDLENSSVTSKQTPQLVVSEDPMMMSAVPSATSLNKAFSINKETQPGQAGLMQTERPGVSTPTESGVPSAEEVFGSSQPERISPESGLAKAMLTIAITATPSLTVDEKEELLTSTNFQPIVEEITETTKGFLKYMDNQSFATESQEGVGLGHSPSSYVNTKEMLTTNPKTEKFEADTDHRTTSFPGAESTAGSEPGSLTPDKEKPSQMTADNTQAAATKQPLETSEYTLSVEPETDSLLGAPEVTVSVSTAVPAASALSDEWDDTKLESVSRIRTPKLGDNEETQVRTEMSQTAQVSHEGMEGGQPWTEAAQVALGLPEGETHTGTALLIAHGNERSPAFTDQSSFTPTSLMEDMKVSIVNLLQSTGDFTESTKENDALFFLETTVSVSVYESEADQLLGNTMKDIITQEMTTAVQEPDATLSMVTQEQVATLELIRDSGKTEEEKEDPSPVSDVPGVTQLSRRWEPLATTISTTVVPLSFEVTPTVEEQMDTVTGPNEEFTPVLGSPVTPPGIMVGEPSISPALPALEASSERRTVVPSITRVNTAASYGLDQLESEEGQEDEDEEDEEDEDEEEEDEEEDEEDKDADSLDEGLDGDTELPGFTLPGITSQEPGLEEGNMDLLEGATYQVPDALEWEQQNQGLVRSWMEKLKDKAGYMSGMLVPVGVGIAGALFILGALYSIKVMNRRRRNGFKRHKRKQREFNSMQDRVMLLADSSEDEF", "sequence_length": 774, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "6c215eb98aa955a5643e52ac2c7004a76bdc1e910f799bb5911cadc434e86a8c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q86TY3.json", "taxon_id": "9606", "uniprot_accession": "Q86TY3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/armh4-pf15767.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15767", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/armh4-pf15767.yaml" } ], "pfam_ids": [ "PF15767" ], "protein_name": "Armadillo-like helical domain-containing protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQDSITGIVNSFNLFFPSTMSRPTLMPTCVAFCSILFLTLATGCQAFPKVERRETAQEYAEKEQSQKMNTDDQENISFAPKYMLQQMSSEAPMVLSEGPSEIPLIKVFSVNKESHLPGAGLLHPTSPGVYSSSEPVVSASEQEPGPSLLERMSSEHSLSKVMLTVAVSSPASLNPDQEGPYNSLSTQPIVAAVTDVTHGSLDYLDNQLFAAKSQEAVSLGNSPSSSINTKEPEIIKADAAMGTTVVPGVDSTGDMEPDRERPSEMAADDGQSTTTKYLVTIPNNFLTTEPTAGSILGDAKVTVSVSTAGPVSSIFNEEWDDTKFESISRGRPPEPGDNAETQMRTKPPHGTYESFEGTEESPSSTAVLKVAPGHLGGEPALGTALVTALGDERSPVLTHQISFTPMSLAEDPEVSTMKLFPSAGGFRASTQGDRTQLSSETAFSTSQYESVPQQEAGNVLKDITQERKMATQAMNTTSPVVTQEHMATIEVPRGSGEPEEGMPSLSPVPAEVADAELSRRGESLATPASTTVVPLSLKLTSSMEDLMDTITGPSEEFIPVLGSPMAPPAMTVEAPTISSALPSEGRTSPSISRPNTAASYGLEQLESEEVEDDEDEEDEEDEEEEEEDEEDEEDEEDKETDSLYKDFDGDTEPPGFTLPGITSQEPDIRSGSMDLLEVATYQVPETIEWEQQNQGLVRSWMEKLKDKAGYMSGMLVPVGVGIAGALFILGALYSIKVMNRRRRNGFKRHKRKQREFNSMQDRVMLLADSSEDEF", "sequence_length": 775, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "034111c4fb0b481a1224498dec3133173177cc93d3d3c721c2ddf118f4d956e1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BT18.json", "taxon_id": "10090", "uniprot_accession": "Q8BT18", "uniprot_release": "2026_03" } ], "pfam_id": "PF15767", "short_name": "ARMH4", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cc190-pf15768.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15768", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cc190-pf15768.yaml" } ], "pfam_ids": [ "PF15768" ], "protein_name": "Coiled-coil domain-containing protein 190", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERHMVRGPLHKHFDLERKSAKQAEARLSQRLQRLEDICLYHVKSLTREQRQLQKELQRLQQDIIKKKLCSYFGNRSQKRPEDVLTLSSQGGQKHRALQANKASALTTNTTQGRSKTKSQMPPFHHIGPKDPMKSKQQALSQNNRTSHFIEEKLQAQEKESINPPKGKGSNESISLLCHNQDVSTHTVDGGPGSGPAGDSEPGHSDETRSNDASTRPDHNPAKQTPLDPVEGGGDFKDKPQTSTYLELFEKARKAHYLRHRVPPESERLLSIAEIFGHKESSQSRAEKGCENRVTI", "sequence_length": 296, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "855303c0d3bd8f14af37f4092cdf416490eb3af1c97ba9c1b517b74ffb7fd542", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1RMX6.json", "taxon_id": "9913", "uniprot_accession": "Q1RMX6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cc190-pf15768.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15768", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cc190-pf15768.yaml" } ], "pfam_ids": [ "PF15768" ], "protein_name": "Coiled-coil domain-containing protein 190", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDRSMVKGPLYKQFDLERKSARQAEARLSLRLQRLEIICLYHVKSLAREQRQLQKELQRLQQDIIKKRFSSYVGHEIQKRSKDVVTFLPPTGQRHAVPEPKIRTLKNSVTQEVKTKIPVPSLHDPVLKDTLRSQEHLLSHGERTSCFKEGSPQGQEGEPTNPLKGVDPSKDVSVPCHDQELSTNKTEDSGVSSQDGERGSAPANETRSENASQKPRGDADVQNSPSSVDYAGSFKDERTKPSFLELFEKAKNAHYVRHRVPPESERLLSIGEIFGHKHYSLPRTGETL", "sequence_length": 288, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "062971ddec60f8ee5ba356c46467c06e53616ec68408aa6f006b119ecc9f79af", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3URK1.json", "taxon_id": "10090", "uniprot_accession": "Q3URK1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cc190-pf15768.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15768", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cc190-pf15768.yaml" } ], "pfam_ids": [ "PF15768" ], "protein_name": "Coiled-coil domain-containing protein 190", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERHMVRGQLYKHFDLERKNAKQAEARLDQRLQRLKVICLYHVKLLTWEQRQLQKELQRLQQAETMKKKFSSYLGNGFQKRPEDVLVFSPQGRQKHRAPQAKKMRALATRMAQDTCKSKSQVPPSHDAGLKDPMKSKKQPLSQNNRTACFIKEQPQAQEKDSVNPSKDVDPSKGISVPCQNQEVSTNTIEQGPSSSPASDSGMACADETRSKDVALKPDGNTGKQIPPKHMECAGSFEGEFTKPTFLELLSKARNAHYLRHRVPPESERLLSIGEIFGHGESSSSRAGKECENRVPSKFLPL", "sequence_length": 302, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5ca8786d544d937a6cc589ccbbfe20e6f142940af008822fcb49bf30e82824c6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q86UF4.json", "taxon_id": "9606", "uniprot_accession": "Q86UF4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15768", "short_name": "CC190", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4698-pf15769.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4698-pf15769.yaml" } ], "pfam_ids": [ "PF15769" ], "protein_name": "Coiled-coil domain-containing protein 60", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKAPATKKLQRVPSKAIWLFSGSDQLTQASDKTVKSTKSMDKEIVNLKKDLIRSRFLIQCVKIGRGYFTMLQEETAFKKHQQHLKKLQEEELNKFQPAKKYSDIQCRDTLLTTYEYEKMKKLEAGIIIRPFTPIHNCIMAPSLPESHVDPLFRQLCALHWLLEALTIDHTHHTMRPVIACWNPKDPGGSKSTIKKINKDKSMGQRWDHFVTAPKTKKFKAPAIRSLATRKPSRRGSALSLTRTSGGSSPQSSMMSVNPSSDEPTGSKDIEDNESSSTKPEEEVLHFSLQKLLEMVREDARRTILMETEMQKKAPSILSLVKQVKSDYGWKDWQTTHKSSERSSTTSGESHIQVTQKKSKGRANRDIIYCKTGICNTMRAKFYSVAQEAGFCLQDKMEILKKRQEERGLQKFHSFIVTSNFQKDIAKMRHQVSMVKGDAEEMADHWYFDLLSKLPEDLKSFRPAKKILTKLQKFGENLDLRIRPHVLLKVLQDLRIWELCSPDIAVAIEFVREHIIHMPQEDYVNWLQSRVNMPIRHRPILT", "sequence_length": 542, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2a1582ab985909edaea8894409a9dd70930ad02a085ce723988ffc1f6e6f62d8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3ZAV0.json", "taxon_id": "10116", "uniprot_accession": "Q3ZAV0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4698-pf15769.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4698-pf15769.yaml" } ], "pfam_ids": [ "PF15769" ], "protein_name": "Coiled-coil domain-containing protein 60", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKVPATKKLQKITSKKALWLFSSADQLTQQASDKTAKNSKYIDKEIANLKKDLMRSRFLIQCVKIGRGYFNILREENAMKKKQQLLQKLKEEELNKFQPAKKFSDIHCRDNLLATYDCEKLKKLEAGIIIRPFTPIHSCLMAPSLPESHVDPLFRQLCALHWLLEALTIDHTHHTMRPLIACWNPKDPGGSKSTIKKINKDKSMGQRWDHFVTAPKTKKYKAPAIRTAMASRKPSRRGSTLSLTRTSGGSSPQSSMMSVNPGSDEPMGSKDIEDNESSSTKPEEEILHLYLQKLLEMVREDARRTILVESEIQKKAPSILSLVKQIKSEYGWKEWQTTHKSSERSSTTSAESHIQVIQKKSKSRVNRDIIYCKTGVCSNMRAKFFSVAQEAGFCLQDKMEILRKRQEERGLQKFHSFIVTSNFQKDITKMRHQVSIVKGDAEEIADHWYFDLLSKLPEDLKSFRPAKKILMKLQKFGENLDLRIRPHVLLKVLQDLRIWELCSPDIAVAIEFVREHIIHMPQEDYINWLQSRVNIPFRQRTILT", "sequence_length": 545, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aedff2ba9c160c91b0663c5d1b0c69b523244b1ed458a4c7ea801fcc51c8a452", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C4J0.json", "taxon_id": "10090", "uniprot_accession": "Q8C4J0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4698-pf15769.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15769", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4698-pf15769.yaml" } ], "pfam_ids": [ "PF15769" ], "protein_name": "Coiled-coil domain-containing protein 60", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKVPATKKLQSSPNSGAVRPFYASENLRQVPDKPMKSIKYMDKEIINLKKDLIRSRFLIQSVKIGRGYFAILREETAKKKKQQQLQKLKEEERNKFQPAEKISEIHYGDTLLSTYDDEKLKTLGARVTRRPFTPIHSCIISPSLTEAHVEPLFRQLCALHWLLEALTIDHTHHTMKPVITCWNPKDPGGSKSTIKKINKDKSMGQKWEHFITAPKTKKFKIPTMRVTNRKPSRRGSTLSLSRASGGSSPQSSMISVNPGSDEPPSVNTQVTSSKDIEDNESSSTKPDEEPLYMNLQKLLEMVREDARRTVTIENGMQRKAPSILSVLKQNKSNSAYKEMQTTLKSSERSSSTSAESHIQPVQKKSKNRTNCDINIHYKSGVCNTMRAKFYSVAQEAGFCLQDKMEILMKRQEERGIQKFRAFVLVSNFQKDIAKMRHHISVVKGDAEEIADHWYFDLLSKLPEDLKNFRPAKKILVKLQKFGENLDLRIRPHVLLKVLQDLRIWELCSPDIAVAIEFVREHIIHMPQEDYISWLQSRINIPIGPYSALR", "sequence_length": 550, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "30cf69c704e403865b8b71c755332539d37cb08b32d12da055e8cb50d3622626", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IWA6.json", "taxon_id": "9606", "uniprot_accession": "Q8IWA6", "uniprot_release": "2026_03" } ], "pfam_id": "PF15769", "short_name": "DUF4698", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4699-pf15770.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15770", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4699-pf15770.yaml" } ], "pfam_ids": [ "PF15770" ], "protein_name": "PDCD10 and GCKIII kinases-associated protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGCRCCKMIQSYLFDPVQVPSPGFVNEVNNCKLEEDDTVRLKGTQNSEVEVPGSTLHSGSLSKPDSSGSTTGLPCQGSLTQEDSEERPCVEKHGIVNGIRPTATLQSVRSPRPQQVDSVSWASSPWVATIDSAHPAQPFLEGEDYRKQSCMLPTLEGTQMVGHGDSRAPAEALAVADHIPYIPAPDYPQVWSPEVDNVNPEEKDCLFENHSEVEPLPGIHPRVSQQGLSMPFSLKRSWDSLNEAGTTEVLSVYFKEEDPTQPTPVADPGNEREDPHTYNGNKEGAVVDEDAEVAEALAALEAATAGEDADDAD", "sequence_length": 313, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c59f403b4cc903ba2609fd09b25ce0cdc8620d34935ac34e2be6a0f465161fa2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6AYA8.json", "taxon_id": "10116", "uniprot_accession": "Q6AYA8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4699-pf15770.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15770", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4699-pf15770.yaml" } ], "pfam_ids": [ "PF15770" ], "protein_name": "PDCD10 and GCKIII kinases-associated protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGCRCCKIIQSYLFDPVQVPSPGYVNEVNSCKLDEDDTDKLKGKWSSEVLVQKNDPQRQGSKKTESSSRTADPWEPCWPHQGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSSPTQDDRGSWASTANTVPPTQPFLEGGGTRKQDCVLLASEGTQVMRNGDSRAPSEAESFALEVQDHVFQIPAPDYLQHWGPAGDNVDHNEKDCVFKNHTEDESLEGIQPPVGEHGLNTPFSVRRSWDSLNEDVETEVLSICFNEKGPVHAMPVVDSGNRQEDTHGSDGDGDGEIVDEDAAVAEALAALEAATAGEDLDETD", "sequence_length": 314, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "471d3e3c734a21093e22530fa4f5040540cfa491407c28dfa044255df3b3c6b9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IY42.json", "taxon_id": "9606", "uniprot_accession": "Q8IY42", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4699-pf15770.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15770", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4699-pf15770.yaml" } ], "pfam_ids": [ "PF15770" ], "protein_name": "PDCD10 and GCKIII kinases-associated protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGCRCCKMIQSYLFDPVQVPSPGFVNEVNNCKLEEDDTVRLKGTQNSEVEVPRNALHDGSLSNSESRGSTTGLPHQGPLPQEDSEERPCVEKQGIVNGISPTATLQSVRSSRLHQVDNSSWASSPWVATIDSAHLAQPFLEGEDYRKQSCLLPTLEGTQMVGHGDCRAPAEALAVADHIPYIPAPDYPQLWSPTVDNADPEEKDCLFENHSEVEPLPGIQPRVSQLGLNVPFSLQRSWDSLNEAGTTEVLSDYFKEEGPTHPTPAADSGSEREDPHTYNGDREGVVVDEDAEVAEALAALEAATAGEDADDAD", "sequence_length": 313, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "48e950fb437cfc91ade3c460cbed979f70c228e44d0ce64bcf0d1cd6df3cf0e5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q99K99.json", "taxon_id": "10090", "uniprot_accession": "Q99K99", "uniprot_release": "2026_03" } ], "pfam_id": "PF15770", "short_name": "DUF4699", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-homologous-chromosome-segregation-go0060629.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0060629", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-homologous-chromosome-segregation-go0060629.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/iho1-pf15771.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/iho1-pf15771.yaml" } ], "pfam_ids": [ "PF15771" ], "protein_name": "Interactor of HORMAD1 protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNFNVWNVKEMLSIPSGSGITKPSNWNNNQTDCSLSDSQFLFGSQFCPENSETLLPSLDAGACLRHPKQTQQNSVDSEPSIFIKYQAKPQLLGGDTKDESLFSLPLPVGKSKGLSKQFEEKKRRATDQSDSETLHSFVSHFPEVINKLQTSVEKTEENLSSRSQSILDSVETIAKTFQETARVQHDLMVESVRDKGSMEQAILEIQRTCAARQAEFMEMKSTLKNLEVLVVEQTKNLQQFCDNLSQLIVPGILEELKKFTSVPQVAGHLKDSTSQTSPSLTQSLHFTRQEKHPSEEPATWQAQEAPAGNPSTSSQRPGECGVWDEGAESGVFQKAALPTDGLHRGDGHVKNKTVPTYCKNWVMTTRSVSNHFSNLPSQRAGNGQGLMAQGASQRDVSKFEARVKNACPEYGPQSMCSFDSLEQSATEQKGRPCRKRRRGKKQQPQRSKRGGLLDRKQGQTSKAACAFIARHHCPQSPVCDPQGPLICWLTPRSSTKSTCHILGGTGETSQTARAAQGNLVQHSQRSSTDSSSQGDQQINWFSDLSLENLEPPQCKKGGTNLLCDPDFDSSDDNF", "sequence_length": 574, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5d44067991541586e20006c0a26dae6f468e19223757aa52b9228bc796e1635f", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PDM4.json", "taxon_id": "10090", "uniprot_accession": "Q6PDM4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-homologous-chromosome-segregation-go0060629.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0060629", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-homologous-chromosome-segregation-go0060629.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/iho1-pf15771.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/iho1-pf15771.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8IYA8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15771" ], "protein_name": "Interactor of HORMAD1 protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "54e755aaeb649eb16e5aba48393443c6a26651cde7a1efc9d42e14c58ed2a459", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNFNVWNIKEMLSIPSGSGNKKSSNWNNNQNDYSSLSDSQFLFGSQFCPENSETLSAPLDFGAHLRHSKQSQQNYLEGEPSIFTKYQTKPQLFGGDIKDGGLFPPPLSVGKSKGLLEQFEEKKKRAKDKCDSETLYNFVSNVRESILRLQTSVEKSEDHLSSRSQSILDSLETVAKTLQETIQAQNDLVFEAVQDKGNMEQAILEMKKRFEARQGEFIEMKSNLKHLEVLVAQQSQEFQQLCEQLGQLNVPSVLAELKRLISVPPVKDSASQTSPPLAQSLNLTRQEKYTSEKPVLWQAQALPAAWNPGMGSLQPGEFDVWGEGAKNDDLQEEAALPAFGSHERNRHVKDKVVQTNCKNWAVTKTGAKNHGSSVPGHKIPSDRDLVSQGASQLTSLEINFSTSIKNACQKYQAQSMFLCDPREHLVIKQKDGTVEMRGKDKKQQPRKAHRAHRGRLIASKQKQIPIQTCKFNSKYQSPQPAISVPQSPFLGQQEPRAQPLHLQCPRSPRKPVCPILGGTVMPNKTVRAVQGRLLQLSRCSSQDNWLLSSSSQGDHQMSWFSDLNLGCSETPLCKEAGKNLLYDLGFDSSDDDGF", "sequence_length": 594, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "54e755aaeb649eb16e5aba48393443c6a26651cde7a1efc9d42e14c58ed2a459", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IYA8.json", "taxon_id": "9606", "uniprot_accession": "Q8IYA8", "uniprot_release": "2026_03" } ], "pfam_id": "PF15771", "short_name": "IHO1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Xenopus laevis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/daap1-pf15773.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15773", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/daap1-pf15773.yaml" } ], "pfam_ids": [ "PF00334", "PF15773" ], "protein_name": "Dynein axonemal assembly factor 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASEQDGFLPAATRGDSNWSGVSGWESALSAMRAEVPSIDSDDSSLSDCEEEELHIFQREDTNLIPDLSIELLDDGELNSEVVTRQMSLEKVEFSDSLEPSPNVCVPLSVQKAELDDTINSRNPETEQLCPEPIDNIQTESMVGIKDSEKEDGFRHVLHSSVTTVLKPQINSNVDSEYEIHPGNTEKEHLSTSALSSKPVGLSLQFLECLEQWDLNALLHQLKEEEVQEREMPPLILSMEESTERRHKLIMEKLVEFAAQQSEEVSSVPQLEEKEKEGTISKSSFRPYPDQKMYLKGSGKHPQSFSTICLDLRTTVSKMGQVTSLEQNPENPSQRNEQKEKHHLNKTDHTGKSLLLRNRHNIQNDSLSDANMSNSESLSKEKKELGTPTQRKQRPKSKVDISPKLQEMVGREEKDGREEQEKEKEILQYLPPKSLINSRADEFAQREKQEKEKKARLRMLTQLEDLKPRSSVNGRQPMAEATPILFHPETSYCPGISSLPDVARSGVETLLLTICLSSCGQVFIPGQHGARSSYPSLFLANTFHCLLTWLISLVPGVNTHGKVNAPFHVLGLQQAWQEEGLALYACLSPRQIATQSSPKIRKHKGKQDLRGTSSFYQRVSLFLSHNTLQSVIWWSEDVVERLQGKLFPLPTEVPAVRLSSIATLNSAPEAVEKVFSSACGFYWQTLETEEKINPLLSEIPTDSETEVVSVIVFERMLSNPTAFHHTLHIIQTEGLDVCGVRLLYPQANALHSYIDTVPSSYTGGDGQTLPVLALALRGTQAEHIWAEIAGPFDPQLARLTDQYSLNAMYGFKRGEPIMHWARKSGRLLQELSLWFGGRIPPSGSFNIGFQNPYSRSTQPRSANLRSRSDSEKDVTAFHDTDRCRPPALLTASILGDVFLVVSPAVPSAAYGDVIDICLHRGFALYGLRRLRLSAKRSAMLSMSSTQVSIFCPNVPHSQTDAQPCRQPRLHCFLLLLRKENAAHHTSGLIQALMNELAERGLLGAIHAKFSYICEVDPSFCFHVAPYTDNLLQSLGGSLHAMPDLSTVPMDMLSLRPFASDPEDEQVVVLTMSGKHTLRRAGYFLQKILRPTLKTPASNTGSVHDGFELLGLKWLPSLSRLQAKEITPYEVGDRPWQRSIEHLISNPALLCALRRSNAFAVLQHTIKQLAPTLGMEHPQLIASATPEIAFRQAALIFSDRDLVSDPESRSSLMYIPPTGINCRAGGTEDRRGTTESIFTYMLSGPPVLYTVLLLKPRIWSSALGKILYKVHQQKFILVGMKPVSLTTAMCSQILPEDVKKSEALCLTHCDYLTSGPCLALCLQRRGAVLKLLDVLGPEDPELCRAQDQFLWRAQYGTSAVQNGMYGSTSYQAAIRDIKTFFPEGLLFEESTVLQAEQIPKLTSDILVCSRSHRQTVKNPACGPELPTTDLPFTSALCQTTCLLFPPHMLRTSPPPYIPALEQLMAKEFHITAARLTAFDQLQAQLVAEMYSPGNYLTAKIKLLTEGPCLLVAAQRDNAVTCFPSLVHSDDRHNMSAQTLTEQVLCPQTESQANKMLSCFFDSLTPDSIHQILH", "sequence_length": 1572, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4dcba6a878a63790e28b036388de4f1851efa0c593a2cbec14844a0975ebbd5a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A1L8EYB2.json", "taxon_id": "8355", "uniprot_accession": "A0A1L8EYB2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/daap1-pf15773.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15773", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/daap1-pf15773.yaml" } ], "pfam_ids": [ "PF15773" ], "protein_name": "Dynein axonemal assembly factor 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASPDEDGRPSLPNPWDAILEAVKHQLPSLDSDSSASDCEDEELFIFQRNQTVLIPDLSEELADDPAGAWVTSSGSPPGLAAVPVESAMEPWGEWNAWPRPKESAPLEGRAPSKSSSLLRMSAETPPRQDDDAGGTLNTSASQSPRQGPQGEATRSPQEAGLQTEPLGAASQAQEGSDAASRKALRRERRKMIEKDILHKVTWDGRNPACPDASRGKEKACDAVEVPSEGPPGCLPVLSLQELEEWDLDQVLLSLTGREEDRGDGAPGAAWWAAGRLQGQDHTEPSTQDRLMERLSLLCARQSRETCRAQPGYGTARERVGSSSSSGHLGRRPLGLSCPPARVLSVRRLRPLEIRPGPALG", "sequence_length": 361, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79df1b6c61232064e58bca1f7983915f75b4fdfd0e1ea78e5b38943d126bb0b2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2KIS6.json", "taxon_id": "9913", "uniprot_accession": "Q2KIS6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/daap1-pf15773.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15773", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/daap1-pf15773.yaml" } ], "pfam_ids": [ "PF15773" ], "protein_name": "Dynein axonemal assembly factor 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASNDKGMAPSLGSPWASQMGPWDAILKAVKDQLPSLDSDSPLSDYGEEELFIFQRNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESLPEPVLVPAELATEPGCRQNTRTKDASSQEGRDPGRPFESSGEVSALLGMAEEPPRWLEGDLGSLSFNTKGSQGPPWDPQAEATLSCHEGDPKAEPLSTASQESVNRRALRQERRKMIETDILQKVTRDACGPTSSDKGGVKEAPCHAAESAPRSKMPLVEPPEGPPVLSLQQLEAWDLDDILQSLAGQEDNQGNRAPGTVWWAADHRQVQDRMVPSAHNRLMEQLALLCTTQSKASACARKVPADTPQDTKEADSGSRCASRKQGSQAGPGPQLAQGMRLNAESPTIFIDLRQMELPDHLSPESSSHSSSDSEEEEEEEMAALGDAEGASPSSLGLRTCTGKSQLLQQLRAFQKGTAQPELPASKGPAGGRAQAPEDTAGSRTGRKQHMKLCAKGQSAQARLPRGRPRALGDVPEPGAAREALMPPLEQL", "sequence_length": 520, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c24d4d665b83ef44b0412ec4e87d268b1d402231022038c67e08203394aa86bb", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IYS4.json", "taxon_id": "9606", "uniprot_accession": "Q8IYS4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15773", "short_name": "DAAP1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4702-pf15774.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15774", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4702-pf15774.yaml" } ], "pfam_ids": [ "PF15774" ], "protein_name": "Coiled-coil domain-containing protein 116", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARCRHHSGYLADDEAAHGTYVARLPKKHLLPEMRPTCKLGRVPHLPSMNRYSERQGHQQNLRRPRAFGGFLDFLTEGQVLDSLQTVVEQATECVATMKTEAGVPLVDVQDRVEVPNSRHRSRGRPSINTVHRHRARPTLCAGHPNNYPSCSSSMSDSHSSVTAGWLGSRSQDSDLGARGVGSLPPMRDKLLLEKNLKRLLRLESKGKVLNQHCSQRDSLLWDSLGSQSSSQPTREQPLSWFSGLLASTSVTPETSELGLGEQEMIFLKQELNKEIKSLLNQPTSFNLPTYCPLREPHRTLDFLSEHHLFPALQRVVSQAVDKLSHACRHNGFPLFPVTSELSPVFPGNSDLQPSSKASLPTDREARGETCYSPTSASSPKTSHRKSKDRRGSPSNAVQMATRFRLKVTPTEVSNVPIPSSQCMLKSPNSDLKLQKQTTASNHNHIPQPRHGLHLTLPAPGITVEVASCQGQLRGQVQHSLATPCHLHSHFPFPVFSPFLPLGKSFSTSPPTLCPEVSSRAGLEVLEGHLKGRGCFTHHF", "sequence_length": 540, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fa709417d1b0a09bd68e0a6ac3e5155093a8b987a0de66059951141d7daf7cb0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4V8B5.json", "taxon_id": "10116", "uniprot_accession": "Q4V8B5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4702-pf15774.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15774", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4702-pf15774.yaml" } ], "pfam_ids": [ "PF15774" ], "protein_name": "Coiled-coil domain-containing protein 116", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARCRHHSGYLADDEAAHSTYVAPLPKKHLLPEMRPTCKLGRVPHLPSMNQYSEHQSHQQNFRHPLAFGGFLDFLTEGQVLDSLQTVVEQATERLAAMKTEAGVPLVDIQDPVEVPSSRHRSRARPSIDTVHRHRARPTLCAGRPNNYPSCSSSMSDSHSSITAGWLGSHSQDSDLGARGIGSLPPMRDKLLLEKNLKRLLRLENKGKILNQSCSQRDSLLWDSLGSQTSSQWTREQPLSWFSGLLGSSPATPETSELGLGEQEMIFLKQKLNKEMKSLLNQPRPFNLPTYCPLREPHHTLDFLAKHRLFPALQRVVSQAVDKLSHACRHNGFPLFPVTSETIPDLPGNSDLLQPSSKASIPTNREARGEPCDSLTTAYSPKTSHRKSKGRRGSPPNAVQMATRFRLKVTPTQVSNVPISSFHSMQEAPNSEPKLQKQAMASNCNHISQPCHGLHLTLPAPGITVEVASCQGRLRGPVQHRLASPCCLHSHFPFPLFPPFLSLGKSFSTSPPTLHPEVTSRAGLEVLEQPLKGRGSFTHHF", "sequence_length": 541, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0e7f7064bc86ea41ae02b116a2cd93d3076598cb59a39644d638e1662c8617d7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q80X53.json", "taxon_id": "10090", "uniprot_accession": "Q80X53", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4702-pf15774.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15774", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4702-pf15774.yaml" } ], "pfam_ids": [ "PF15774" ], "protein_name": "Coiled-coil domain-containing protein 116", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARCRHHSGYLADDEASHSMCSARVQLPKKPLVPEMRPACKPGRVPHPPSTCGSSALQGQRRNKRHPQPFGHFLDFLTESQVLDSLETVVEKATERMAAMKTEAGVPLVEVQDPVEVPSGGRRAHARPSLSTVHRHRVRPTLCTGHPNNYPSSSSSMSNCHSSLMAGCLGSHSRDSDLGAQGSLPPVRDKLLLEKNLKRLLQLEREGKGLSQSCSQRDSLLWDSLGSQTSFQWTQEQPLSWFSGLLGSSSGVPEASEPRPGEQEPIFRKREFNKEIKSLLSQLESLDLPGYCPLREPHRTLNFLADHRLFPALQSVVSQAVDKLRGAHCRDGRPLFPTSLEPTSDLPPLGSEPAKPTNGGQPYASPRPTVSSPKMLQRKRKDRGGSPSMSSAQVATRFKLKSPCSSSRFTKKKPLPSISSKSSMSHFSNRLYEELADFLTQQAASLVIRKYEFEKDLSKQLGFFSFPITHVLRDLSLGLKKVKGSRIHLSSETHRSCLLRKLEESKRARQASRLSTSHCSTETPSVQQEPATHTAQDQATEPCRSLYTNLPASRQLSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDEDGV", "sequence_length": 613, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a5df7316264a8ca472505f87a429213e379c407e7c849c9d06523f351068e4b1", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IYX3.json", "taxon_id": "9606", "uniprot_accession": "Q8IYX3", "uniprot_release": "2026_03" } ], "pfam_id": "PF15774", "short_name": "DUF4702", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4703-pf15775.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15775", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4703-pf15775.yaml" } ], "pfam_ids": [ "PF15775" ], "protein_name": "Sperm acrosome developmental regulator", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVVIKFFRWIWQKISRWVFFWKHKAKSVIMDHTDSKKNELKAEKAFKVSETFKLVEPPKEAKVSKMDVSPKVVDPCLLAKTTMDGAAVEAGRRRRSLLKLPQAAVKSVSMLMASALQSGWQMCSWKSSVSSTSVASQMKTRSPLESREAAMLREVYLVLWAIRKQLRQVARRQERRRRHHLRAHMGPQPDPAQGLKQDARSPL", "sequence_length": 204, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c671bee014224bb348d0093f62229db17298898d2016f121da834080a2cd35b1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2T9X5.json", "taxon_id": "9913", "uniprot_accession": "Q2T9X5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4703-pf15775.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15775", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4703-pf15775.yaml" } ], "pfam_ids": [ "PF15775" ], "protein_name": "Sperm acrosome developmental regulator", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRFLRWIRQIWRKVPNWVLFWKHLAKPGLSDQREKHLLKGPEKTSKDFDTVKLANAQKEDMVSDLDVCPGVLRSVKERSPLHDRESRSSRDSRSLMTVVNSVSTFMFSVLQSGWRLCRWKSSMSTGKVSSHTRTGSALGTPEAEMLREVYLVLWVIRKQLRELARRQERRRRRRMRSHASHTSRHSESVQGLKHDARSPL", "sequence_length": 200, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e98b14d7b1fda1d049aa7cfcaf3516b2869a24b6bc5a4c0bc7a81a39530cea4e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6AY52.json", "taxon_id": "10116", "uniprot_accession": "Q6AY52", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4703-pf15775.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15775", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4703-pf15775.yaml" } ], "pfam_ids": [ "PF15775" ], "protein_name": "Sperm acrosome developmental regulator", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVVMKFFRWVRRAWQRIISWVFFWRQKIKPTISGHPDSKKHSLKKMEKTLQVVETLRLVELPKEAKPKLGESPELADPCVLAKTTEETEVELGQQGQSLLQLPRTAVKSVSTLMVSALQSGWQMCSWKSSVSSASVSSQVRTQSPLKTPEAELLWEVYLVLWAVRKHLRRLYRRQERHRRHHVRCHAAPRPNPAQSLKLDAQSPL", "sequence_length": 206, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dc89daaae86188ad24926b6974ca4cb0604578ddea0932227f2f0591f4c30e86", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IZ16.json", "taxon_id": "9606", "uniprot_accession": "Q8IZ16", "uniprot_release": "2026_03" } ], "pfam_id": "PF15775", "short_name": "DUF4703", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/neurobeachin-bdcp-duf4704-ipr031570.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031570", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/neurobeachin-bdcp-duf4704-ipr031570.yaml" } ], "pfam_ids": [ "PF15787" ], "protein_name": "Putative protein BCL8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSCCLSSRVHITRPVLEQFLSFAKYLDGLSHGVPLLKQLCDHILFINPAIWIHTPAKVQLSLYTYLSAEFIGTATIYTTICRIGTVIKDNAHLKILLLGY", "sequence_length": 100, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "78a606eb92892921173f35c61e214ba44f516f0cd323b3d8d2e469673eb60c03", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6P0.json", "taxon_id": "9606", "uniprot_accession": "P0C6P0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1088-pf06469.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1088-pf06469.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/beach-pf02138.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02138", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/beach-pf02138.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4704-pf15787.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15787", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4704-pf15787.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/nbch-wd40-pf20426.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20426", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/nbch-wd40-pf20426.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/neurobeachin-pf20425.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20425", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/neurobeachin-pf20425.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P50851", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02138", "PF06469", "PF13385", "PF14844", "PF15787", "PF20425", "PF20426" ], "protein_name": "Lipopolysaccharide-responsive and beige-like anchor protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "989342fd5b505664a86310e50f680ac0ccf33aa5a0c716969ba010991eb7a4d3", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MASEDNRVPSPPPTGDDGGGGGREETPTEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETVFNLLVGGQFDLEMNFIIQEGESINCMVDLLEKCDITCQAEVWSMFTAILKKSIRNLQVCTEVGLVEKVLGKIEKVDNMIADLLVDMLGVLASYNLTVRELKLFFSKLQGDKGRWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIAKWPYQNGFTFHTWLRMDPVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIVTSIKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMTAVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLAEHHKLLLYDGKLSSAIAFTYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLFAQLDYRQYLSDEIDLTICSTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKSHVSRAVLELCLAFSKYLSNLQNGMPLLKQLCDHVLLNPAIWIHTPAKVQLMLYTYLSTEFIGTVNIYNTIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKGLDGPRPNQKEMLSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLLVALMSEHPNSMIPAFDQRNGLRVIYKLLASKSEGIRVQALKAMGYFLKHLAPKRKAEVMLGHGLFSLLAERLMLQTNLITMTTYNVLFEILIEQIGTQVIHKQHPDPDSSVKIQNPQILKVIATLLRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPKNSDEQKITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSITHSKVTFEIHKENLANIFREQQGKVDEEIGLCSSTSVQAASGIRRDINVSVGSQQPDTKDSPVCPHFTTNGNENSSIEKTSSLESASNIELQTTNTSYEEMKAEQENQELPDEGTLEETLTNETRNADDLEVSSDIIEAVAISSNSFITTGKDSMTVSEVTASISSPSEEDASEMPEFLDKSIVEEEEDDDYVELKVEGSPTEEANLPTELQDNSLSPAASEAGEKLDMFGNDDKLIFQEGKPVTEKQTDTETQDSKDSGIQTMTASGSSAMSPETTVSQIAVESDLGQMLEEGKKATNLTRETKLINDCHGSVSEASSEQKIAKLDVSNVATDTERLELKASPNVEAPQPHRHVLEISRQHEQPGQGIAPDAVNGQRRDSRSTVFRIPEFNWSQMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQVMDNMVMACGGILPLLSAATSATHELENIEPTQGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKSMSSGGILRQCLRLVCAVAVRNCLECQQHSQLKTRGDKALKPMHSLIPLGKSAAKSPVDIVTGGISPVRDLDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNERHSQSCTETGSENENVSLSEITPAAFSTLTTASVEESESTSSARRRDSGIGEETATGLGSHVEVTPHTAPPGVSAGPDAISEVLSTLSLEVNKSPETKNDRGNDLDTKATPSVSVSKNVNVKDILRSLVNIPADGVTVDPALLPPACLGALGDLSVEQPVQFRSFDRSVIVAAKKSAVSPSTFNTSIPTNAVSVVSSVDSAQASDMGGESPGSRSSNAKLPSVPTVDSVSQDPVSNMSITERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREDEKMCDHLIRAAKYRDHVTATQLIQKIINILTDKHGAWGNSAVSRPLEFWRLDYWEDDLRRRRRFVRNPLGSTHPEATLKTAVEHVCIFKLRENSKATDEDILAKGKQSIRSQALGNQNSENEILLEGDDDTLSSVDEKDLENLAGPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQVSPLMFTDKAQQDVIMVLKFPSNSPVTHVAANTQPGLATPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQSIQVHSQCFVITSDNRYILVCGFWDKSFRVYSTDTGRLIQVVFGHWDVVTCLARSESYIGGNCYILSGSRDATLLLWYWNGKCSGIGDNPGSETAAPRAILTGHDYEVTCAAVCAELGLVLSGSQEGPCLIHSMNGDLLRTLEGPENCLKPKLIQASREGHCVIFYENGLFCTFSVNGKLQATMETDDNIRAIQLSRDGQYLLTGGDRGVVVVRQVSDLKQLFAYPGCDAGIRAMALSYDQRCIISGMASGSIVLFYNDFNRWHHEYQTRY", "sequence_length": 2863, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "989342fd5b505664a86310e50f680ac0ccf33aa5a0c716969ba010991eb7a4d3", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P50851.json", "taxon_id": "9606", "uniprot_accession": "P50851", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4800-pf16057.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4800-pf16057.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4704-pf15787.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15787", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4704-pf15787.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/nbch-wd40-pf20426.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20426", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/nbch-wd40-pf20426.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/neurobeachin-pf20425.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20425", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/neurobeachin-pf20425.yaml" } ], "pfam_ids": [ "PF02138", "PF14844", "PF15787", "PF16057", "PF20425", "PF20426" ], "protein_name": "Neurobeachin-like protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAASERLYELWLLYYAQKDLGYLQQWLKAFVGAFKKSISLSSLEPRRPEEAGAEVPLLPLDELHVLAEQLHQADLEQALLLLKLFIILCRNLENIEAGRGQVLVPRVLALLTKLVAELKGCPPPQGRGTQLENVALHALLLCEGLFDPYQTWRRQRSGEVISSKEKSKYKFPPAALPQEFSAFFQESLQNADHLPPILLLRLIHLFCAVLAGGKENGQMAVSDGSVKGLLSVVRGWSRGPAPDPCLVPLALEALVGAVHVLHASRAPPRGPELRALLESYFHVLNADWPAGLSSGPEEALVTLRVSMLDAIPMMLACEDRPVLQATFLSNNCFEHLTRLIQNSKLYLQSRAPPEGDSDLATRLLTEPDVQKVLDQDTDAIAVHVVRVLTCIMSDSPSAKEVFKERIGYPHLQEVLQSHGPPTHRLLQELLNMAVEGDHSMCPPPPIRNEQPVLVLAQWLPSLPTAELRLFLAQRLRWLCDSCPASRATCVQAGLVGCLLETLSTGLALEARCQEQLLALLQALGRVSIRPMELRHLLRPRPGLDSEPGGAEAGKARHAGAVIRTLSGMARHQGPARALRYFDLTPSMAGIMVPPVQRWPGPGFTFHAWLCLHPMDTAPTPAPTRPLQRKQLYSFFTSSGSGFEAFFTAAGTLVVAVCTRKEYLTMSLPEVSFADSAWHCVAIVHVPGRRPFSQNLVHVYKDGHLVKTAPLRCPSLSEPFSSCCIGSAGYRTTTTTTGLPTPPVPATLAYTHPALTRSQSVPASTGLGWGSGLVAPLQEGSIDSTLAGTQDTRWGSPTSLEGELGAVAIFHEALQATALRTLCTLGPNETAPFKPEGELHELSTRLLLHYSPQACKNNICLDLSPSHGLDGRLTGHRVETWDVKDVVNCVGGMGALLPLLERVAAQPKEAEAGPAETHDLVGPELTSGHNTQGLVLPLGKSSEERMERNAVAAFLLMLRNFLQGHMVNQESLVQCQGPAIIGALLRKVPSWAMDMNVLMSAQLLMEQVAAEGSGPLLYLLYQHLLFNFHLWTLSDFAVRLGHIQYMSSIVREHRQKLRKKYGVQFILDALRTHYSPQRERPLAADDLRTVQTSLLGLAREFLVRSLSADDVQVTQTMLSFLAATGDDGQAVGALDLLLALLHGSLVQESLAVFLLEPGNLEVLLALLVRPGSLPLLPDRVCKILRRLQQNERLPERSRQRLRLRECGLQGLVACLPEGTVSPQLCQGLYKLFLGADCLNLSDLLAVVQLSLQADLSVRLDICRQLFHLIYGQPDVVRLLARQAGWQDVLTRLYVLEAATAGSPPPSSPESPTSPKPAPPKPPTESPAEPSDVFLPSEAPCPDPDGFYHALSPFCTPFDLGLERSSVGSGNTAGGGGSSGTLTPASQPGTPSPLDGPRPFPAAPGRHSSSLSNVLEDGSLPEPTISGDDTSNTSNPQQTSEEELCNLLTNVLFSVTWRGVEGSDEAAWRERGQVFSVLTQLGASATLVRPPDCIKRSLLEMMLESALTDIKEAPVGVLASLTQQALWLLRLLQDFLCAEGHGNQELWSEKLFEGVCSLLDRLGAWPHLANGTADLREMAQIGLRLVLGYILLEDPQLHAQAYVRLHMLLQTAVPARREEACYVLSKLEAALGRVLNTSSLESATDEAGSPLAAAAAAAAAERCSWLVPLVRTLLDRAYEPLGLQWGLPSLPPTNGSPTFFEDFQAFCATPEWRHFIDKQVQPTMSQFEMDTYAKSHDLMSGFWNACYDMLMSSGQRRQWERAQSRRAFQELVLEPAQRRARLEGLRYTAVLKQQATQHSMALLHWGALWRQLASPCGAWALRDTPIPRWKLSSAETYSRMRLKLVPNHHFDPHLEASALRDNLGEVPLTPTEEASLPLAVTKEAKVSTPPELLQEDQLGEDELAELETPMEAAELDEQREKLVLSAECQLVTVVAVVPGLLEVTTQNVYFYDGSTERVETEEGIGYDFRRPLAQLREVHLRRFNLRRSALELFFIDQANYFLNFPCKVGTTPVSSPSQTPRPQPGPIPPHTQVRNQVYSWLLRLRPPSQGYLSSRSPQEMLRASGLTQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPTLDLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPAGTIDKFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPADVKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWASSPEDFIQQHRQALESEYVSAHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVTDERERKALEGIISNFGQTPCQLLKEPHPTRLSAEEAAHRLARLDTNSPSIFQHLDELKAFFAEVVSDGVPLVLALVPHRQPHSFITQGSPDLLVTVSASGLLGTHSWLPYDRNISNYFSFSKDPTMGSHKTQRLLSGPWVPGSGVSGQALAVAPDGKLLFSGGHWDGSLRVTALPRGKLLSQLSCHLDVVTCLALDTCGIYLISGSRDTTCMVWRLLHQGGLSVGLAPKPVQVLYGHGAAVSCVAISTELDMAVSGSEDGTVIIHTVRRGQFVAALRPLGATFPGPIFHLALGSEGQIVVQSSAWERPGAQVTYSLHLYSVNGKLRASLPLAEQPTALTVTEDFVLLGTAQCALHILQLNTLLPAAPPLPMKVAIRSVAVTKERSHVLVGLEDGKLIVVVAGQPSEVRSSQFARKLWRSSRRISQVSSGETEYNPTEAR", "sequence_length": 2754, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ba3926d0d8d54b4a11d4b40482af9313b2d4ac24a34588910a9bb889ca4b6956", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZNJ1.json", "taxon_id": "9606", "uniprot_accession": "Q6ZNJ1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4800-pf16057.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4800-pf16057.yaml" } ], "pfam_ids": [ "PF02138", "PF14844", "PF15787", "PF16057", "PF20425", "PF20426" ], "protein_name": "Neurobeachin-like protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAASERLYELWLLYYAQKDLGYLQQWLKAFVGVFEKTISLSSLEPRRPEEAGAEVPLLPLDALHALAEQLDQDDLDQALLLLKLFIILCRNLENVEAGWGQVLVPRVLALLTVLMAELKGSSQESHGTQLENVALHALLLCEGLFDPYQTWRRQLTGEVISSKEKSKYKFPPAALPCEFGAFFQENLQDAERLPPTLLLRLIHLFGAILAGGKANGQMAVSAGSVQGLLGVVRGWGRGPAQDPQQVPLALRALVGAVHVLHASRAPPRGPELRTLLEGYFHILNADWPTSPSSSPEEALVTLRVSMLDAIPMMLACEDRPVLQATFLSNNCFEHLIRLIQNSKLYLQARAPPEGDSDLATWLLTEPDVQKVLDQDTDAIAVHVVRVLTCIMSGSPSAKEVFKERIGYQHLQEVLQSHGPPTHRLLQELLNMAVEGDHSMHPPPPIRNEQPVLVLMQWLPALPTAELRLFLAQRLWWLCDSCPASRTTCVQAGLVGYLLETLNTGTALGARCQEQLLALLQALGRVSLRPLELRRLLRPPPGLDSESSGNESQKARHAGAVIRALSGMARHRGPARALRYFDLTPSMAGIMVPPVQRWPGAGFTFHAWLCLQSSEAVPTSAPSRPLQRKQLYSFFTSSGSGFEAFFTAAGTLVVAVCTRKEYVTVNLPEVSFADSAWHCVAIVHVPGRRPFSQNLVNVFKDGHLVKTVPFRFPSLSEPFSSCCIGSAGHRTTTTTTGLPASSVSTALAHTHPSLTRSQSVPASTGLGWGPGLGTPLQEGSVSSTLAGTQDTRWGSPTSLEGELGAVAIFHEALQPSALRVLCSLGPNEPAPFKPEGELHEFGTKLLLHYSPQACKNNICLDLSPGHGLDGRLTGHRVETWDVKDVVNCVGGMGVLLPLLERVAVQPQEAEAGPCETHDLVGPELTSGRNTQGLLLPLGKSSEDRMERNAVAAFLLMLRNFLQNHTVNQESLVQCQGPAIIGALLRKVPSSAMDMNVLMSAQLLMEQAAADGGGPLLYLLYQHLLFNFHLWTLSDFAVRLGHIQYMSSMVREHRQKLRKKYGVQFLLDALRTHYSPQRERPLAADDLRTVQTSLLGLVREFLVRNFSVEDMQVVLNFLAATGDDGQVVGTLELLLTLLQGSPVQDPLAAFLLELGNLEVLLALLVRPKSTPLLTDRVCKILRRLQQNERLPERNRQRIRLHDCGLQGLVASLSEESISPQLCQGLYKLFVGTDCLNLSDLLAVVQLSLQADLSVRLDICRQLFYLIYGQPDVVRLLARQAGWQDVLTRLYVLEAATDSSPPRFLPELPISSELALSPPPTELPADSSDVFLPSESPCPDQDAFYQALSPFSTPFDLGLERASIGSGNTAGGGSSNGTVTPASQPGTPSPLDGPRPFPTAQGRHSSSLSNVLEDGSLLEPNISGDDTSNTSNPQQTPEEELCNLLTNVLFSVTWRGVEGSAEAAWRERGQVFSVLTQLGASATLVRPPDCIKRSLLEMMLESALTDIKEAPPGGLANLSQQALWLLRLLQDFLCAEGHGNQELWSEKLFEGVCNLLDRLGAWPHLANSTADLREMAQIGLRLVLGYILLEDPQLHAQAYVKLHTLLQTAVPTRREEACYVLSKLEAALSRALTTSSSETEHASTAVAASERCSWLVPLVRTLLDRAYGPLGLQWGLPSLPPTNGSPTFFEDFQAFCATAEWRHFIDKQVQPTMSKFEMDTYAKSHDLMSGFWNACYDTLMSSGQRHQRDRIQSRRAFKELVLEPAQRRARVEGLRYASVLKQQAAQHSTALLHWGALWRQLSSPCGAWALRIPPAPHWKLSSAETYSRMRLKLVPNHHFDPHLEASALRDNLGEAPMTPTEETSLPLAVTKEAKISAPPEELPEEQLGEEDLAALESLMEAAELDEKREKLVLSAECQLVTVVAVVPGLLEITTQHVYFYDGSTERVETEEGIGHDFRRPLAQLREVHLRRFNLRRSALELFFIDQSNYFLNFPHKVAASSASSPCQAPRPQLYPIPSHTQLRNQVYSLLLRLRPPTQGYLSSRSPLEMLRASGLTQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPVLDLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPAGTIDKFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPADVKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWAGSPEDFIQKHRQALESEYVSTHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVADERERKALEGIISNFGQTPCQLLKEPHPPRLSAEEAANRLARLDTNSPSIFQNLNQLKAFFAEVVSEAVPLVLALVPHRQSHSFITQSSSDMLVTVSASGLLGTHTWLPYDRNINNYFTFSKDPTMGSPKVQKLLSGPWVSDSGVSAQALAVAPDGKLLFSGGHWDGSLRVTSLPRGRLLNQLSRHLDIVTCLALDTCGIYLISGSRDTTCMVWRLLQQSGLSAGLAPKPVQVLYGHVAAVSCVAISTELDMAVSGSEDGTVIIHTVRRGQFVAALRPPGATLPGPISHLALGAEGQIVVQSSACERPGAQVTYSLHLYSVNGRLRASVTLTEQPTALTVAEDFVLLGTAQCSLHILHLNKLRPAVPPLPMKVPVHSVSVTKERSHVLVGLEDGKLIVVGAGQPSEVRSSQFARRLWRSSRRISQVSSGETEYNPGEAR", "sequence_length": 2742, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b6cfc7e0d41349d24ba92e3087d855e23828c50354607fdf482a173b0019b9dd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZQA0.json", "taxon_id": "10090", "uniprot_accession": "Q6ZQA0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1088-pf06469.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1088-pf06469.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4704-pf15787.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15787", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4704-pf15787.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/nbch-wd40-pf20426.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20426", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/nbch-wd40-pf20426.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/neurobeachin-pf20425.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20425", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/neurobeachin-pf20425.yaml" } ], "pfam_ids": [ "PF02138", "PF06469", "PF13385", "PF14844", "PF15787", "PF20425", "PF20426" ], "protein_name": "Neurobeachin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASEKPGPGPGLEPQPVGLIAVGAAGGGGGGSGGGGTGGSGMGELRGASGSGSVMLPAGMINPSVPIRNIRMKFAVLIGLIQVGEVSNRDIVETVLNLLVGGEFDLEMNFIIQDAESITCMTELLEHCDVTCQAEIWSMFTAILRKSVRNLQTSTEVGLIEQVLLKMSAVDDMIADLLVDMLGVLASYSITVKELKLLFSMLRGESGIWPRHAVKLLSVLNQMPQRHGPDTFFNFPGCSAAAIALPPIAKWPYQNGFTLNTWFRMDPLNNINVDKDKPYLYCFRTSKGVGYSAHFVGNCLIVTSLKSKGKGFQHCVKYDFQPRKWYMISIVHIYNRWRNSEIRCYVNGQLVSYGDMAWHVNTNDSYDKCFLGSSETADANRVFCGQLGAVYVFSEALNPAQIFAIHQLGPGYKSTFKFKSESDIHLAEHHKQVLYDGKLASSIAFTYNAKATDAQLCLESSPKENASIFVHSPHALMLQDVKAIVTHSIHSAIHSIGGIQVLFPLFAQLDNRQLNDSQVETTVCATLLAFLVELLKSSVAMQEQMLGGKGFLVIGYLLEKSSRVHITRAVLEQFLSFAKYLDGLSHGAPLLKQLCDHILFNPAIWIHTPAKVQLSLYTYLSAEFIGTATIYTTIRRVGTVLQLMHTLKYYYWVINPADSSGITPKGLDGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDELQSILNYLLTMHEDENIHDVLQLLVALMSEHPASMIPAFDQRNGIRVIYKLLASKSESIWVQALKVLGYFLKHLGHKRKVEIMHTHSLFTLLGERLMLHTNTVTVTTYNTLYEILTEQVCTQVVHKPHPEPDSTVKIQNPMILKVVATLLKNSTPSAELMEVRRLFLSDMIKLFSNSRENRRCLLQCSVWQDWMFSLGYINPKNSEEQKITEMVYNIFRILLYHAIKYEWGGWRVWVDTLSIAHSKVTYEAHKEYLAKMYEEYQRQEEENIKKGKKGNVSTISGLSSQTTGAKGGMEIREIEDLSQSQSPESETDYPVSTDTRDLLMSTKVSDDILGNSDRPGSGVHVEVHDLLVDIKAEKVEATEVKLDDMDLSPETLVGGENGALVEVESLLDNVYSAAVEKLQNNVHGSVGIIKKNEEKDNGPLITLADEKEDLPNSSTSFLFDKIPKQEEKLLPELSSNHIIPNIQDTQVHLGVSDDLGLLAHMTGSVDLTCTSSIIEEKEFKIHTTSDGMSSISERDLASSTKGLEYAEMTATTLETESSSSKIVPNIDAGSIISDTERSDDGKESGKEIRKIQTTTTTQAVQGRSITQQDRDLRVDLGFRGMPMTEEQRRQFSPGPRTTMFRIPEFKWSPMHQRLLTDLLFALETDVHVWRSHSTKSVMDFVNSNENIIFVHNTIHLISQMVDNIIIACGGILPLLSAATSPTGSKTELENIEVTQGMSAETAVTFLSRLMAMVDVLVFASSLNFSEIEAEKNMSSGGLMRQCLRLVCCVAVRNCLECRQRQRDRGNKSSHGSSKPQEVPQSVTATAASKTPLENVPGNLSPIKDPDRLLQDVDINRLRAVVFRDVDDSKQAQFLALAVVYFISVLMVSKYRDILEPQRETTRTGSQPGRNIRQEINSPTSTVVVIPSIPHPSLNHGFLAKLIPEQSFGHSFYKETPAAFPDTIKEKETPTPGEDIQVESSIPHTDSGIGEEQVASILNGAELETSTGPDAMSELLSTLSSEVKKSQESLTENPSETLKPATSISSISQTKGINVKEILKSLVAAPVEIAECGPEPIPYPDPALKRETQAILPMQFHSFDRSVVVPVKKPPPGSLAVTTVGATTAGSGLPTGSTSNIFAATGATPKSMINTTGAVDSGSSSSSSSSSFVNGATSKNLPAVQTVAPMPEDSAENMSITAKLERALEKVAPLLREIFVDFAPFLSRTLLGSHGQELLIEGLVCMKSSTSVVELVMLLCSQEWQNSIQKNAGLAFIELINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAADRREEEKMCDHLISAAKHRDHVTANQLKQKILNILTNKHGAWGAVSHSQLHDFWRLDYWEDDLRRRRRFVRNAFGSTHAEALLKAAIEYGTEEDVVKSKKTFRSQAIVNQNAETELMLEGDDDAVSLLQEKEIDNLAGPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDSAFKKIDTKVLAYTEGLHGKWMFSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYSLPRVGVGTSYGLPQARRISLATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRDTSDVKELIPEFYYLPEMFVNSNGYNLGVREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHLCFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQITDLVDQSIQINAHCFVVTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWYWSGRHHIIGDNPNSSDYPAPRAVLTGHDHEVVCVSVCAELGLVISGAKEGPCLVHTITGDLLRALEGPENCLFPRLISVSSEGHCIIYYERGRFSNFSINGKLLAQMEINDSTRAILLSSDGQNLVTGGDNGVVEVWQACDFKQLYIYPGCDAGIRAMDLSHDQRTLITGMASGSIVAFNIDFNRWHYEHQNRY", "sequence_length": 2946, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3357bd1b54708bfbb46a2e7e6f583fd0b1b20c226c1c7fbbaeb9981b0acf4c73", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NFP9.json", "taxon_id": "9606", "uniprot_accession": "Q8NFP9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1088-pf06469.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1088-pf06469.yaml" } ], "pfam_ids": [ "PF02138", "PF06469", "PF14844", "PF15787", "PF20425", "PF20426" ], "protein_name": "Neurobeachin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADIMRPPYSEIKRPDEIVRMTTADNLKFAVLIGLIEVGQVTNREVVNTVLHLLVGGEFDMELNFVIQDAQNIKHMLELLDHCPPNLQAEIWSVFIAILRKSVRNLQACTDVGLIEHVLVRLQRSETVVADLLIEMLGVLASYSITVKELKLLFGTMKATNGKWPRHSAKLLNVLRQMPHRNGPDVFFSFPGRKGSAMVLPPLAKWPYENGFTFTTWFRLDPINSVNIEREKPYLYCFKTSKGVGYTAHFVGNCLVLTSMKVKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCLVNGQLASSTEMAWFVSTNDPFDKCYIGATPELDEERVFCGQMSAIYLFSEALTTQQICAMHRLGPGYKSQFRFDNECYLNLPDNHKRVSHFQLLPATLGASALSGGSGSGTGSGTGNDASAAAAAAVAAGQQQQLQLQFQILAAEQEARAIDWSDEKLDLNAAFVKIRAVLTARNAVTLAGSSSTGTTAVATAAAAAAAAGAGAGTTAAATSAAAAAAATQNENDAAVGQQQHATHHHATAATGSADDPLGHLPTGNASSSSSSFEQLRRMSSVSSLNSMVGSADTEEVNQLKAVLYDGKLSNAIVFMYNPVATDGQLCLQSSPKGNVSYFVHTPHALMLQDVKAVVTHSIHCTLNSIGGIQVLFPLFSQLDMAHEGLGDIKRDPTLCSKLLGFICELVETSQTVQQHMIQNRGFLVISFMLQRSSREHLTLEVLGSFLNLTKYLVTCLSANSDLLLKQLFCFSFLTWQLLDHVLFNPALWIYTPANVQARLYSYLATEFLSDTQIYSNVRRVSTVLQTVHTLKYYYWVVNPRAKSGIIPKGLDGPRPAQKDILAIRAYILLFLKQLIMIGNGVKEDELQSILNYLTTMHEDENLHDVLQMLISLMSEHPSSMVPAFDVKHGVRSIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLLYEESLSLPTYNVLYEIMTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQTESLIDVKKLFLQDMTLLCNSNRENRRTVLQMSVWQEWLIAMAYIHPKSSEEQKISDMVYSLFRMLLHHAIKHEYGGWRVWVDTLAIVHSKVSYEEFKLQFAQMYEHYERQRTDNITDPALRQARPISTISGWEREELHQQQNGGSAAAVATNQTAAVKGSVSIASLEDVPPVVEEEVEELELEEVEIQEGPITEETEQKSVIANISDVYNEQLKTDATCNGNLEDVKEEEPVQQQIGDLEKQPEPSTPLGALRETLQLGDDMDVEELELATAKDALNAEQHVSRVLQASEAALNDCKMAVDDVLQESSSVLKDEEIELAVNEVVQGVLNNEKKTQSQDNKDNKEQPGEQDVNVSLLNSKNLLNNNNNNNNNSPSPTPTTATATAETEAETEVNANEIVSSTEAPKAETETSVAPEVETPETAKPSPIVPSPVLATNQKTEDAANKLNNNEKLAEISASPEPPIVVETPEADLLQLSDSETKPNKETEAEDSVALAVRDIVEQLIDKVIDATEAESASETKTETNNNEIPKKEKQTSEEPEDVETAETLAAAAKEIVQEVVEAALVMVQEESTQEKPEKGANSEEEKNEIGKEEILLQLEEKPASTEVQETKIEGDLKKPEDPKGHSSVEPKTPNLEEPKPQETEQQKSQEVAEELPQKPEEQVVAIVNQVLDTLVDDTVKAVAAEQTTQTSPAPEEQSPQILAMESPATSVRVKPTEVDSTTQTTPKNEAGSSLLVEQVQQVLQEDDAQQSAGMTIEDEDYSNQQAAAAVENANSSQLDANHYGPGNPESKQQQQRSKSGSTRPMFSPGPTRPPFRIPEFKWSYIHQRLLSDVLFSLETDIQVWRSHSTKSVLDFVNSSENAIFVVNTVHLISQLADNLIIACGGLLPLLASATSPNSELDVLEPTQGMPLEVAVSFLQRLVNMADVLIFATSLNFGELEAEKNMSSGGILRQCLRLVCTCAVRNCLECKERTRYNVGALARDVPGAAHLQALIRGAQASPKNIVESITGQLSPVKDPEKLLQDMDVNRLRAVIYRDVEETKQAQFLSLAIVYFISVLMVSKYRDILEPPAEPQIQRQSPVLQRTAGGGGRQIQDSDYEIIVVDENNPSVLADNDSHSSGPPSIKANQTTTIATTTTTTATTHINNNNTKTTTSNAPTATIKIQQQPLSPPKPLVPQKLPKSVDSDVGSLNMNSTENEVPEVESSSEILIDDHKPSHSNDESWTDVNLNEDAAVQAASAGIVVGLVDNRGNVISDKHDPSHHNQQQQQQAGIIGQQQQHGSLGHSERGDKPDSEISVVRVPDGYGGAGSGGGVNSGQGQGVPSNQRPRPEELPMKAPALVAQLPLTTPSREASLTQKLEIALGPVCPLLREIMVDFAPFLSKTLVGSHGQELLMEGKGLTTFKNSHSVVELVMLLCSQEWQNSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHADFESQCAQTLLERREEERMCDHLITAARRRDNVIASRLLEKVRNIMCNRHGAWGDSSSTSSGGAIVGAVQKSPYWKLDAWEDDARRRKRMVQNPRGSSHPQATLKAALENGGPEDAILQTRDEFHTQIAVSRTHPSGQHNGELLDDAELLIEDRELDLDLTGPVNISTKARLIAPGLVAPGTVSITSTEMFFEVDEEHPEFQKIDGEVLKYCDHLHGKWYFSEVRAIFSRRYLLQNVALEIFLASRTSILFAFPDQHTVKKVIKALPRVGVGIKYGIPQTRRASMMSPRQLMRNSNMTQKWQRREISNFEYLMFLNTIAGRTYNDLNQYPIFPWVLTNYESKDLDLSLPSNYRDLSKPIGALNPSRRAYFEERYESWDSDTIPPFHYGTHYSTAAFTLNWLVRVEPFTTMFLALQGGKFDYPDRLFSSVSLSWKNCQRDTSDVKELIPEWYFLPEMFYNSSGYRLGHREDGALVDDIELPPWAKSPEEFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAIRATNVFYYLTYEGSVDLDGVLDPVMREAVENQIRNFGQTPSQLLMEPHPPRSSAMHLSPMMFSAMPEDLCQMLKFYQNSPVIHISANTYPQLSLPSVVTVTAGHQFAVNRWNCNYTASVQSPSYAESPQSPGSNQPLTIDPVLAVHGTNNNSNAASRRHLGDNFSQMLKIRSNCFVTTVDSRFLIACGFWDNSFRVFATETAKIVQIVFGHFGVVTCMARSECNITSDCYIASGSADCTVLLWHWNARTQSIVGEGDVPTPRATLTGHEQAVTSVVISAELGLVVSGSSNGPVLIHTTFGDLLRSLDPPAEFHSPELITMSREGFIVINYDKGNVAAYTINGKKLRHETHNDNLQCMLLSRDGEYLMTAGDRGIVEVWRTFNLAPLYAFPACNAGIRSLALTHDQKYLLAGLSTGSIIVFHIDFNRWHHEYQQRY", "sequence_length": 3466, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "663c1512a404200f28c598560c4c26c90cde694687999345cb5f1716888b8ead", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q9W4E2.json", "taxon_id": "7227", "uniprot_accession": "Q9W4E2", "uniprot_release": "2026_03" } ], "pfam_id": "PF15787", "short_name": "DUF4704", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4705-ipr031572.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4705-ipr031572.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4705-pf15788.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF15788", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4705-pf15788.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q6ZQT7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15788" ], "protein_name": "Putative uncharacterized protein FLJ44672", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ca6a9dbe69c51835d659b5415d1fe4803f49165979e24bae10e9c63594bf907a", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQPGGTAGPEEAPMREAEAGPPQVGLSRPTCSLPASSPGPALPPGCVSRPDSGLPTTSLDSAPAQLPAALVDPQLPEAKLPRPSSGLTVASPGSAPALRWHLQAPNGLRSVGSSRPSLGLPAASAGPKRPEVGLSRPSSGLPAAFAGPSRPQVGLELGLEEQQVSLSGPSSILSAASPGAKLPRVSLSRPSSSCLPLASFSPAQPSSWLSAAFPGPAFDFWRPLQAQNLPSSGPLQARPRPRPHSGLSTPS", "sequence_length": 251, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ca6a9dbe69c51835d659b5415d1fe4803f49165979e24bae10e9c63594bf907a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZQT7.json", "taxon_id": "9606", "uniprot_accession": "Q6ZQT7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4705-ipr031572.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4705-ipr031572.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4705-pf15788.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15788", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4705-pf15788.yaml" } ], "pfam_ids": [ "PF15788" ], "protein_name": "Putative uncharacterized protein FLJ46235", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASGRWASPGPAWASRRPLQAQVVLKSASPGPAPASQQASSFGSAPAQLPPAFVDPELSPAMLLSPTCLPVACTGPGLAGEQPLQAPLLPPRGISRPSSGLTAASRDQVPACLPAACVRPSSSVTVACSGPTHASGTLSRGVSPCLTLASLTLREFSVGPCLTLASLTLREVSMSPCLTLVSLTLRAILPHAGLLRPSSCLCWPFQAQPLPVGGL", "sequence_length": 215, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5aa7b2208ee95d1de0da040ea9536a035a22a1639be7943ef858c859eebb9216", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZRM9.json", "taxon_id": "9606", "uniprot_accession": "Q6ZRM9", "uniprot_release": "2026_03" } ], "pfam_id": "PF15788", "short_name": "DUF4705", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4706-pf15797.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15797", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4706-pf15797.yaml" } ], "pfam_ids": [ "PF15797" ], "protein_name": "Uncharacterized protein C1orf198 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASMAAAIAASRTAVMSANRPLDDRERKRFTYFSSLSPMARKIMQDKEKIREKYGPEWARLPPAQQDEIIDRCLVGPSASAPGDPEELARFPGLRGPTGQKVVRFGDEDITWQDEHSAPFSWETRSQMEFSISSLSIQEPSCSTAGEPRPPSKAPQGSQALRAPQGGKSSSLDALGPAWKEEEASFWKINAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPGCYRQEPAPRAREAKAEKPSPLRQEQRAAPSVSTECERPQPAQACASPPSEAGPSGPMGKPVSPEVMEAVEDMEDALFLEPVPVQVSSSNVILKTGFDFLDNW", "sequence_length": 325, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "055eacbfe22508d5ebbf6ac8b0357926e05edfbccaa1e89ed056cd75fa4082be", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58CU6.json", "taxon_id": "9913", "uniprot_accession": "Q58CU6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4706-ipr031600.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031600", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4706-ipr031600.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4706-pf15797.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15797", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4706-pf15797.yaml" } ], "pfam_ids": [ "PF15797" ], "protein_name": "Uncharacterized protein C1orf198 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASMAAAIAASRSAVMSGNRPLDDRERKRFTYFSSLSPMARKIMQDKEKIREKYGPEWARLPPAQQDEIIDRCLVGPRAPAAAADAGDVRDPARFPGLRGPTGQKLVRFGDEDITWQDEHSAPFSWETRSQMEFSISSLSIQEPSAATVTSDARSLAKAPQGTQGSKPAQSSRSSSLDALGPARKEEEAPFWKINAERSREGPEAEFQSLTPSQIKSMEKGEKVLPACYRQEPTTKDREAKPVPQEQQTLPSVSAEQEVPQPVQAPASLLPKATPTESPEKPPPPAVQRDEDDDALFSEPALAQISSSNVLLKTGFDFLDNW", "sequence_length": 322, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "726f74439743ddc563603aab8314f5255b491b2cd45250788a5c970e85b9b954", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C3W1.json", "taxon_id": "10090", "uniprot_accession": "Q8C3W1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4706-ipr031600.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031600", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4706-ipr031600.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4706-pf15797.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15797", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4706-pf15797.yaml" } ], "pfam_ids": [ "PF15797" ], "protein_name": "Uncharacterized protein C1orf198", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASMAAAIAASRSAVMSGNRPLDDRERKRFTYFSSLSPMARKIMQDKEKIREKYGPEWARLPPAQQDEIIDRCLVGPRAPAPRDPGDSEELTRFPGLRGPTGQKVVRFGDEDLTWQDEHSAPFSWETKSQMEFSISALSIQEPSNGTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASFWKINAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQEQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEPKFAQVSSSNVVLKTGFDFLDNW", "sequence_length": 327, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d7ef281fa57d44ac4a6d93ceaf42f11427b65bad452293ff27b994cdc8b06869", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H425.json", "taxon_id": "9606", "uniprot_accession": "Q9H425", "uniprot_release": "2026_03" } ], "pfam_id": "PF15797", "short_name": "DUF4706", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trapp14-c-terminal-ipr055452.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055452", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trapp14-c-terminal-ipr055452.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/trapp14-n-terminal-ipr055453.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055453", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/trapp14-n-terminal-ipr055453.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trapp14-c-pf23652.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23652", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trapp14-c-pf23652.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/trapp14-n-pf15806.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15806", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/trapp14-n-pf15806.yaml" } ], "pfam_ids": [ "PF15806", "PF23652" ], "protein_name": "Trafficking protein particle complex subunit 14", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"aec42a9f167a52b55c360b2da4eeb88264d6ab6d13cd4b19a4eb0b13095529c4", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTVGARLRSKAESSLLRRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERGPGTRGARRVHFALLPERYEPLEEPAPSEQPRKRYRRKLKKYGKNVGKVIIKGCRYVVIGLQGFAAAYSAPFAVATSVVSFVR", "sequence_length": 142, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "aec42a9f167a52b55c360b2da4eeb88264d6ab6d13cd4b19a4eb0b13095529c4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H7X2.json", "taxon_id": "9606", "uniprot_accession": "Q9H7X2", "uniprot_release": "2026_03" } ], "pfam_id": "PF15828", "short_name": "RDD1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { 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"MDTILVFSLIITSYNVTKKELRDSSCQVEPLPDLFPKDVRSIRAELIREAQAEAKRPMFIQNQTVAILQCLGSGSKVKVNLVHSEKRQKVKHILKNLRVMTVPCRNSTAPPSCHLTPASKVQAGFLVTGKAFLPGVSQCKVYPVMGASSETYPSTTTSVTPGKKGEKTTKVDGFSSPLNQDTDENLEKRKKWSIVVKVLIAVTLFVSGIAITVFVIFEVPCPSRCQQVRELCQCQRLRRRPRKEDQQPGTAESQSDTQPKKVGQEAPNSSSPKKAVEITVVHQTYF", "sequence_length": 286, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a589e382415c7caabfc9e143dab22869058000cf3672d840d12a713b297a750d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6H7F9.json", "taxon_id": "9913", "uniprot_accession": "A6H7F9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4711-pf15829.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15829", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4711-pf15829.yaml" } ], "pfam_ids": [ "PF15829" ], "protein_name": "Uncharacterized protein C17orf78 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTILVFSLMIASYDSNKNDLRKSSCQVEQWPSFFSEDVRSNKDLVVRVPLEIHTDTKGTPFIQNQPIATLRCLGSGRRVTVHLVYSERRPKVKYIMKNLPVITDLPRNSTASPRCHLRATSQFQNGSLLTAFLPGISQCTVYSAKDRSASSEMVPITTSSTTPRSKGDEATSTGAFPNPLTQGIDMSLKRRQKWSLVVKALIAVTLLLGGAAIIVFVIFEVPCPSQCLRVRQLCQCQWLWRRKRKEEDQKPGTTESQLDSQPEKVKHNVPNSSDSKKTTDIAIIYQTYF", "sequence_length": 290, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2bc2d23a1e6fcb1fca89e9181b51f7f3060fffc485ddcb3307e8eaefae72d588", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5QR91.json", "taxon_id": "10090", "uniprot_accession": "Q5QR91", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4711-pf15829.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15829", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4711-pf15829.yaml" } ], "pfam_ids": [ "PF15829" ], "protein_name": "Uncharacterized protein C17orf78", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTILVFSLIIASYDANKKDLRDSSCRLEQLPGIFPKDVRSIRELQMQETHTETKRTTFIQNRTIATLQCLGSDSKVKVNLVYLERRPKVKHILKNLRIIAAPRRNSSASSSCHLIPTSKFQTGSLLKGKAFLPGISQCKVLGASSETFPTTAPSITPGNKEGEKTTSTDTDENLEKRQKWSIVVKILIAVTLLLSGVAIIVFVIFEVPCPYQCLGARKLCQCQWLWRWQKKGGQPPGTAESKPDSQPQKVGQDAANSSNPKKAAEITVIHQTYF", "sequence_length": 275, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "78ad042a7eca000fcf7689c1ff3e3ef38a01822d1a11a9561806743e28f55c47", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N4C9.json", "taxon_id": "9606", "uniprot_accession": "Q8N4C9", "uniprot_release": "2026_03" } ], "pfam_id": "PF15829", "short_name": "DUF4711", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"2c684364e5a72c7a1cdec5b35631cd28d4bab1ed267f31a590320ae8cf0af9da", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZUJ4.json", "taxon_id": "9606", "uniprot_accession": "Q6ZUJ4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4712-pf15830.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15830", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4712-pf15830.yaml" } ], "pfam_ids": [ "PF15830" ], "protein_name": "Uncharacterized protein C3orf62 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEKLRRCRKELTAAIDRAFEGVRHSQECTAQQRLDAPSLTSQPVHRLLCRNPLAACPSAAPYSGASCAPESENPAFGTHHIPVNSKLQQPLYPKRKPLTSKENVLMQSSILARDRQFWRAAGDGEDWRKDSLRKDMERDLKADPNVLLSSSSQEVTKDLLDMIDHTSIRTIEELAGKLEFENELNRVCGHCQDSPFKEEAWALLVDESPQKALDADPGSLKQALDDQNIVETVLDLEEDYNLMTSFKYQIE", "sequence_length": 252, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5fd9b54ceb2d06c22b2d23b26e43e12fe9665babb451e50c6a8467055f6c2a28", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D9C7.json", "taxon_id": "10090", "uniprot_accession": "Q9D9C7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15830", "short_name": "DUF4712", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/small-integral-membrane-protein-22-smim22-of-casimo1-this-family-conta-cd20255.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20255", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/small-integral-membrane-protein-22-smim22-of-casimo1-this-family-conta-cd20255.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/smim5-18-22-pf15831.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/smim5-18-22-pf15831.yaml" } ], "pfam_ids": [ "PF15831" ], "protein_name": "Small integral membrane protein 22", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSSPGPRRESPRKERPKGVDNLALEP", "sequence_length": 83, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f40bb0a5692faf0ce7c65d8ef0c0b3886934c6ac41241ee49c67ae5bab0a78ea", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/K7EJ46.json", "taxon_id": "9606", "uniprot_accession": "K7EJ46", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/small-integral-membrane-protein-22-smim22-of-casimo1-this-family-conta-cd20255.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd20255", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/small-integral-membrane-protein-22-smim22-of-casimo1-this-family-conta-cd20255.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/smim5-18-22-pf15831.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/smim5-18-22-pf15831.yaml" } ], 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"mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q71RC9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15831" ], "protein_name": "Small integral membrane protein 5", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f2868d2d5a567ff6d5dd24628041b851807b4ddaf3d9a98c279ddab4a70f3f21", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAATDFVQEMRAVGERLLLKLQRLPQAEPVEIVAFSVIILFTATVLLLLLIACSCCCTHCCCPERRGRKVQVQPTPP", "sequence_length": 77, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f2868d2d5a567ff6d5dd24628041b851807b4ddaf3d9a98c279ddab4a70f3f21", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q71RC9.json", "taxon_id": "9606", "uniprot_accession": "Q71RC9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/smim5-18-22-pf15831.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15831", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/smim5-18-22-pf15831.yaml" } ], "pfam_ids": [ "PF15831" ], "protein_name": "Small integral membrane protein 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAATDFVGEIRSVGERLLLKLQQLPQAEPVELVAFSIIVLFTATVLVLGLIACSCCCAHCCCSESRQRKIPVRPTKPR", "sequence_length": 78, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "958c5b25edb5fa7fd0d17cf69071aa7314bf16d97ea0059ceaa8fa5caac50442", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BT42.json", "taxon_id": "10090", "uniprot_accession": "Q8BT42", "uniprot_release": "2026_03" } ], "pfam_id": "PF15831", "short_name": "SMIM5_18_22", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4714-pf15833.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4714-pf15833.yaml" } ], "pfam_ids": [ "PF15833" ], "protein_name": "Leucine-rich single-pass membrane protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPEETLEDTVLPMQNQRNRGALAPNHVQEVRLHRVESISDLHSGGSLRPCLVEEAQAWEELLGVLPPSLCTQAGCSPVCGRGGFLLLLVLLVFTCLALATVAVYLSVLQSESLRVLAHTLRTQEETLLKLRLASLSQLRRLNSSEARAPS", "sequence_length": 150, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea751426792a85cc0d1b5b0a9ea4d1545be0090f8ef92cc56b264dc903e41f7a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A571BE98.json", "taxon_id": "10090", "uniprot_accession": "A0A571BE98", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4714-pf15833.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4714-pf15833.yaml" } ], "pfam_ids": [ "PF15833" ], "protein_name": "Leucine-rich single-pass membrane protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPSLAPDCPLLAMPEETQEDSVAPMMPSQRSRGPLAPNHVHEVCLHQVESISDLHSGAGTLRPYLTEEARPWDELLGVLPPSLCAQAGCSPVYRRGGFLLLLALLVLTCLVLALLAVYLSVLQSESLRILAHTLRTQEETLLKLRLASLSQLRRLNSSEAQAPS", "sequence_length": 164, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b37e765a7cdd872a9a0ec3753ecbc2d83bdbbe6bf2dfcdbe509593a70ddbc442", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N112.json", "taxon_id": "9606", "uniprot_accession": "Q8N112", "uniprot_release": "2026_03" } ], "pfam_id": "PF15833", "short_name": "DUF4714", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4715-pf15835.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15835", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4715-pf15835.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A6NF36", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15835" ], "protein_name": "Coiled-coil domain-containing protein 182", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3f994c375f64a256ff6ad62df0568ebe15fd1db200aea886a747255f44b8eb0b", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEPLYQAGSILMTVNTLQGKKMIESGLQSGDFSLSQSWPSCLPPPADLEILQQKVAGVQRELEDFKKEALKSIHYLEDAFCEMNGALVQQEEQAARVRQRLREEEDRGIVRNKVLTFLLPREKQLREHCKRLEDLLLDRGRDALRATKKSQAD", "sequence_length": 153, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3f994c375f64a256ff6ad62df0568ebe15fd1db200aea886a747255f44b8eb0b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6NF36.json", "taxon_id": "9606", "uniprot_accession": "A6NF36", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4715-pf15835.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15835", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4715-pf15835.yaml" } ], "pfam_ids": [ "PF15835" ], "protein_name": "Coiled-coil domain-containing protein 182", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEALFQAGSILMKVNTLQGKKMVESGLQSGDLSLSQSWPSYLPLPADLEILQQKVAGVQRELEDFKEEALKAIRYLEDAFCQMSGVLAQQEEQAARVKQRLREEEDRGIVRNKVLTFLLPREKQLREHCQRLENMLVRSHNPLRAIRKSQAD", "sequence_length": 152, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b4e666ebd82bb818e915e7db376e06003be33cb5ede962169c15e5f46c0c0456", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D9C6.json", "taxon_id": "10090", "uniprot_accession": "Q9D9C6", "uniprot_release": "2026_03" } ], "pfam_id": "PF15835", "short_name": "DUF4715", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem262-pf15837.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15837", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem262-pf15837.yaml" } ], "pfam_ids": [ "PF15837" ], "protein_name": "Cation channel sperm-associated auxiliary subunit eta", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRWRDRIAVLCFPPGLMLTVAALILFFIHMGVFASDVHNFCVIHNYDHMSFRYTVVLIFSQVISIGWAAMGSLYAEMTGDKFLRCFALTILILNGAMFFNRLCLEFLAINYREERH", "sequence_length": 116, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b4a6ec78ea5b292dbd2150b53360c882a1a568c5f9b985503cdec4a68e409775", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D3Z338.json", "taxon_id": "10090", "uniprot_accession": "D3Z338", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tmem262-pf15837.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15837", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tmem262-pf15837.yaml" } ], "pfam_ids": [ "PF15837" ], "protein_name": "Cation channel sperm-associated auxiliary subunit eta", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWLQDRIATFFFPKGMMLTTAALMLFFLHLGIFIRDVHNFCITYHYDHMSFHYTVVLMFSQVISICWAAMGSLYAEMTENKYVCFSALTILMLNGAMFFNRLSLEFLAIEYREEHH", "sequence_length": 116, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "84f03fc623111a51bb3009f4ca37992d8ba98493dcece712dba59957b6c45520", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E9PQX1.json", "taxon_id": "9606", "uniprot_accession": "E9PQX1", "uniprot_release": "2026_03" } ], "pfam_id": "PF15837", "short_name": "TMEM262", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/llcfc1-pf15838.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/llcfc1-pf15838.yaml" } ], "pfam_ids": [ "PF15838" ], "protein_name": "Sperm-oocyte fusion protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPLAPQLCRAVFLVPILLLLQVKPLNGSPGPKDGSQTEKTPSADQNQEQFEEHFVASSVGEMWQVVDMAQQEEDQSSKTAAVHKHSFHLSFCFSLASVMVFSGGPLRRTFPNIQLCFMLTH", "sequence_length": 122, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2e86a634467c4834b479f4eb8599f95456b6a7b20f116b0ba86975cc98a45100", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96L11.json", "taxon_id": "9606", "uniprot_accession": "Q96L11", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/llcfc1-pf15838.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15838", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/llcfc1-pf15838.yaml" } ], "pfam_ids": [ "PF15838" ], "protein_name": "Sperm-oocyte fusion protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSLGSQLHRATFLTALLLLLLLQVKGVKTLIVSASLDGDKSQKDKVSSEDQGEEEYEEHFEASSEGEQWQEIDMVQQEDTISQAITLQDHLLDLAFCFNLASIMFFL", "sequence_length": 108, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e0a26c50728a06ddbf2f23207e6130ec3e38f14578bf7cc51e617fec33159d3d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D9P8.json", "taxon_id": "10090", "uniprot_accession": "Q9D9P8", "uniprot_release": "2026_03" } ], "pfam_id": "PF15838", "short_name": "LLCFC1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4718-pf15842.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4718-pf15842.yaml" } ], "pfam_ids": [ "PF15842" ], "protein_name": "Uncharacterized protein C1orf185 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASPNGFFNHLTYFLAAGAVTLGIGFFALASALWFLICKRREIFQDSKFKAVDEKCRQRPSKAKIKSHPQCVFISRNFHTGRFQSQEEQRKKETACIKANNGYSKDDFCLATKKVICDPSESSSATNPSSVTLSLSTLPSDFYYSQSVEIADDWYSDDSQMKKSPSMPFLGEPLMEKVFSYLTTIPLEQCTENVLNMTLRDDQKDDNLKEIFTQRNTEVEIQNLQHNTE", "sequence_length": 229, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "186c49f3f1292bb6eeaf70e4fa15a695ba6c7023ccd8ff155490206090e1349e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2M2T8.json", "taxon_id": "9913", "uniprot_accession": "Q2M2T8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4718-pf15842.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4718-pf15842.yaml" } ], "pfam_ids": [ "PF15842" ], "protein_name": "Uncharacterized protein C1orf185", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASPKGFFNYLTYFLAAGAVTLGIGFFALASALWFLICKRREIFQNSKFKAIDERCRQRPSMAKIKSHSQCVFISRNFHTGRFQLQEEQRKKEAAHIKAIKDHSKDEPQLATKNIICDPSETSSTTNRSSVTLSLSTLPSDSYYSQSIEAADDWFSDDSLVKRNSPMPSLGEPLMEKVFSYLSTISLEEGTESVLNDTL", "sequence_length": 199, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9d86840303aed608b88bd03936f32bb38300d8b9fc6c584bbe1e0753415ca540", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T7R7.json", "taxon_id": "9606", "uniprot_accession": "Q5T7R7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4718-pf15842.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15842", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4718-pf15842.yaml" } ], "pfam_ids": [ "PF15842" ], "protein_name": "Uncharacterized protein C1orf185 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSPNGVFSHLTYFMAAGALSLGIGFFALASALWFLICKRRELFEESKFKEFGENMKQGSCKPKLKAHPQCVFISRNFHAGYLQSQTEKREKEEAEKKAVRSHSKVEFCLQDPISCESPEVTSVANGSSVSTLSLSTSISSSYCCQTVEEAEDWLTDDCLETRIPLKNPLLGEPLKKKVLAYLSSISLEEWPGNTVSNTFCSEQKTDSLKELLVLKNTEVGKHNLQFDIE", "sequence_length": 230, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e14771507285745af1d11c406154094cfe25cdd56f2a6af660515ff6e771ae9c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CPZ3.json", "taxon_id": "10090", "uniprot_accession": "Q9CPZ3", "uniprot_release": "2026_03" } ], "pfam_id": "PF15842", "short_name": "DUF4718", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4719-pf15843.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15843", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4719-pf15843.yaml" } ], "pfam_ids": [ "PF15843" ], "protein_name": "Uncharacterized membrane protein C3orf80 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWGPGVTAEGLSVAPAPPPLLPLLLLLALALVAPSRGGGGCAELACGERERCCDSANATAVRCCKLPLHAFLDNVGWFVRKLSGLLILLVLFAIGYFLQRIICPSPRRYPRGQARPGQARPGPPGGAGPPGTAGPPDDDDDSPALLRDEVAAGSQDSLLDSGGGRGRGSGGRLPPSCVSEHELHVVSPVFLQLPSYEEVKYLPTYEESMRLQQLSPAEVVLPVSVLGRPRGGSAGDSDGGQVRFPLI", "sequence_length": 247, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "64c4f25e3bab488999ca38f0dc770ca9aed6671bb93c96aa887b43b6668e0044", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E9Q0B3.json", "taxon_id": "10090", "uniprot_accession": "E9Q0B3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4720-pf15846.yaml" } ], "pfam_ids": [ "PF15846" ], "protein_name": "Uncharacterized protein C2orf66", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIIDSSRIPSFTQLHSTMTRAPLLLLCVALVLLGHVNGATVRNEDKWKPLNNPRNRDLFFRRLQAYFKGRGLDLGTFPNPFPTNENPRPLSFQSELTASASADYEEQKNSFHNYLKG", "sequence_length": 117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "924de862a50c34e45f084cada1270a0d9ae033d2aa4dee2f91170dd491c06790", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6UXQ4.json", "taxon_id": "9606", "uniprot_accession": "Q6UXQ4", "uniprot_release": "2026_03" } ], "pfam_id": "PF15846", "short_name": "DUF4720", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo 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"27e026846db1b6eba8b953065317bea2ce0e4799e611fdf35c45d85e99904bfe", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTRAQPITKTPRCPFHFFPRRPRIHFRFPNRPFVPSRCNHRFPFQPFYWPHRYLTYRYFPRRRLQRGSSSEES", "sequence_length": 130, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "27e026846db1b6eba8b953065317bea2ce0e4799e611fdf35c45d85e99904bfe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q17RF5.json", "taxon_id": "9606", "uniprot_accession": "Q17RF5", "uniprot_release": "2026_03" } ], "pfam_id": "PF15848", "short_name": "ODAPH", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { 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"MSHYFYLTPQILLPFSPLTSQEFDLIRRKAGASWQDETRWSDSSVTTYTGSYRKKQLDKSMCSQFSFRAGQHEPECKQMSLTNSSACHLLCWAGTQETTDIKGLFPDITRPFKKSFDVKHGVAHQIWDFGDCFPTPPNYGKYCVRPKKPAQEALINYSRRGKGVLKHLHGRCDSESKVCSSEDSEADRYSDYGWGGPSSPFN", "sequence_length": 202, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "93924d8c88df8e1913519141557485d9b61f1ad45d310f57bb50633fddc91e18", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C9J302.json", "taxon_id": "9606", "uniprot_accession": "C9J302", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4722-pf15849.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4722-pf15849.yaml" } ], "pfam_ids": [ "PF15849" ], "protein_name": "Uncharacterized protein C4orf51 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSHFLYLAPEIQLPFSPLTSTEFELIRRKARELWQNEARWSTSSVTTYSGSYREKQLDEASCHRLAQRFGQPHFEYKPAPLPGGSAYNALPGQAGSQEAADGKGRLPDITSPSQDSTLNIKHKVAHQSWSSGTSRPTCLAYRPRHLSPSSKPKRPGFELLMSYRNRGRKLLRQLQRQWDYENKLGSSDDSDTDRFSSVTSGSSRRKFK", "sequence_length": 208, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "11b276ab893a97955700dfc0c4246cadafe8de107da1c272b483ad9b275ad8d7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4V7B2.json", "taxon_id": "10116", "uniprot_accession": "Q4V7B2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4722-pf15849.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15849", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4722-pf15849.yaml" } ], "pfam_ids": [ "PF15849" ], "protein_name": "Uncharacterized protein C4orf51 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTHFLYLTPEILLPFSPLTSTEFELIRRKAQQLWQDETRWSASSMTTYSGSYREKQLDEATCNRLAQRVGQPQFEYKPTPLPGSSAYNTLPGHAGSQEAADGKGRLPDIASPSRDSPLNIKHKVAHQIWGSEVPCPTFLAYRGLRMSPCMQPKKPGFELLMSYRNRGKALLKRLQRQWDYESKLGSSEDSGTDRFSSNTSGSSGRKFK", "sequence_length": 208, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a4e2ab6178fbae13500083803f227a3fa08b38057916fb2f26b92aec11f80dbe", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DAF8.json", "taxon_id": "10090", "uniprot_accession": "Q9DAF8", "uniprot_release": "2026_03" } ], "pfam_id": "PF15849", "short_name": "DUF4722", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/extracellular-domain-ecd-found-in-homo-sapiens-uncharacterized-protein-cd23610.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd23610", "section": "canonical_examples", "url": 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"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4709-ipr031651.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031651", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4709-ipr031651.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4724-ipr031711.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031711", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4724-ipr031711.yaml" }, { "cited_uniprot_accession": 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"9dc4d7e5d33c396df4edb09789372d390060c3f46ac898e8dd216e20fbf8a545", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MQPQESHVHYSRWEDGSRDGVSLGAVSSTEEASRCRRISQRLCTGKLGIAMKVLGGVALFWIIFILGYLTGYYVHKCK", "sequence_length": 78, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "9dc4d7e5d33c396df4edb09789372d390060c3f46ac898e8dd216e20fbf8a545", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B2RUZ4.json", "taxon_id": "9606", "uniprot_accession": "B2RUZ4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": 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"qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15875", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4731-pf15875.yaml" } ], "pfam_ids": [ "PF15875" ], "protein_name": "Small integral membrane protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQSQESGVHYSRWDSSSRDEVSMTAMSSSEEASCYRRISQKLCSGKLGIAMKVLGGVALFWIIFILGYITGYYVHKCK", "sequence_length": 78, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "28e6820993efac8fd36fb1dae41b9ffd8c128199906441ce030ff00c74b65429", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C8K7.json", "taxon_id": "10090", "uniprot_accession": "P0C8K7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15875", "short_name": "DUF4731", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4732-pf15876.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15876", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4732-pf15876.yaml" } ], "pfam_ids": [ "PF15876" ], "protein_name": "Putative uncharacterized protein C19orf81", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQPEVEPVCFPAMGSPTMHRKAGALLMDLETPEEMQARSLGRPIKSSKQYLRQVIAEYEALDRELPCIRKFPTPPASQPLCLCMETLPEEDFTHLEVLQALEAQLPGAMESGRVSSIRFENMNVICGTAGRRNRWLIAVTDFQTRSRLLRSGLSPRGLAHQIVRHDDLLLGDYRLHLRRSLVRRRMLEALGAEPNEEA", "sequence_length": 198, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "67677426bbfc9a24bc438df2a33cb2daf32ef5624e3049b5c43f02c8927573b7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C9J6K1.json", "taxon_id": "9606", "uniprot_accession": "C9J6K1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4732-pf15876.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15876", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4732-pf15876.yaml" } ], "pfam_ids": [ "PF15876" ], "protein_name": "Putative uncharacterized protein C19orf81 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQPEVEPLISPNLGAPGSHRETGSFLVDLESMEESMSRSLGKPAKSSKQYLRQVISEYEALDRELPCIRKFSEPPSAQPLCLCMETSEDFTHVEVLQALEAELPGAMESGRVNSIRYENMNVICGTAGRRDRWLITVTDFQTRSRLLRSGLTLRGTAYPLVRHDDLLLGDYRLHLRRSLVRRRMLEALGAEPADED", "sequence_length": 196, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aa8976e1efb6a7e920510ef8c50afefb995cd7f107abb00889b41b444c7b9b33", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/D3Z070.json", "taxon_id": "10090", "uniprot_accession": "D3Z070", "uniprot_release": "2026_03" } ], "pfam_id": "PF15876", "short_name": "DUF4732", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/frey-pf15878.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15878", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/frey-pf15878.yaml" } ], "pfam_ids": [ "PF15878" ], "protein_name": "Protein Frey", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLAMLGALHPRAGLSLFALYLVLAAALLRPQPLRPQRAVPEEFSAPLELSAPLSGLVDDYGVRPKHPWPRGPRPLLSRAQQRKRDGPDMAEYYYDSRL", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2b32a0c51b57b3c3048fce63fb307aa1cbee3a983147570fa2cae76578a66cdf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5PK62.json", "taxon_id": "9913", "uniprot_accession": "A5PK62", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/frey-pf15878.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15878", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/frey-pf15878.yaml" } ], "pfam_ids": [ "PF15878" ], "protein_name": "Protein Frey 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLAMLGALHPRAGLSLFLHLILAVALLRSQPLRSQRSVPEAFSAPLELSQPLSGLVDDYGILPKHPRPRGPRPLLSRAQQRKRDGPDLAEYYYDAHL", "sequence_length": 98, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "335dd8191ea399400763b21d166a2d674013e8a113ebcfb31f6fd9cf2d312964", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C9JXX5.json", "taxon_id": "9606", "uniprot_accession": "C9JXX5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/maintenance-of-protein-localization-in-endoplasmic-reticulum-go0035437.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0035437", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/maintenance-of-protein-localization-in-endoplasmic-reticulum-go0035437.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/frey-pf15878.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15878", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/frey-pf15878.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8CF31", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15878" ], "protein_name": "Protein Frey", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "253ddaddf6004725b254f4f1dd81e15cc8f34bd342e3af8848e8c5ff24be79b9", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVLAMLGALYPRAGLSLFLFYLILAGALLRPQPQRSQQSVPEEFSAPLELLQPLSGLVDDYGLRPKHPRPGGPRPLLSQAQQRKRDGPNMADYYYDVNL", "sequence_length": 99, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "253ddaddf6004725b254f4f1dd81e15cc8f34bd342e3af8848e8c5ff24be79b9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CF31.json", "taxon_id": "10090", "uniprot_accession": "Q8CF31", "uniprot_release": "2026_03" } ], "pfam_id": "PF15878", "short_name": "Frey", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15881", "short_name": "DUF4734", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4735-pf15882.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4735-pf15882.yaml" } ], "pfam_ids": [ "PF15882" ], "protein_name": "UPF0764 protein C16orf89 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSLKMLYPLFMLLVLSSKIDLSNQDVIDNILMSLSKGITYFDMQGSNINLDGVVGYIILQAQLREATRTWPHSDFLSLSQRAAAISMLKRLSKSLSTAASTLQETDPKYFKEFEPILDSSFWSLPGEWSSTDPSLVYTSVRAMECYDEHMSDKCMTFLLGTWKDNGTPCIVTKTCRDTMTQFGCPHYSLSHQLLYFMIGTMKGCSKMLKGDLRLSRVNITVGHYKRIFCSNMMKSNQDIFKNSLTGQMQDIFIENILLCGLVGFSDFYKLDWLQSILTWQDQEAGCFGKEEDISHIFEEFLDAPHKRVKRREKTLTDGCSSHMTGVAVSALGGFLNFYLSEQDITKRPII", "sequence_length": 351, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "401a66984597a0635ed5ea6d63670d8b01d9da49a7482f49202047c2afdba830", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A7MCS3.json", "taxon_id": "7955", "uniprot_accession": "A7MCS3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4735-pf15882.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4735-pf15882.yaml" } ], "pfam_ids": [ "PF15882" ], "protein_name": "UPF0764 protein C16orf89 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARLGLLLLLLLALPPHFSSVSWPDTAQGTMANLILTALEKATLFLEDRLPTINLDGVVGFQVLEVQLRGVQEKWAHKPLLQPLSMRAGQMANTLSALLQKSIFYLKQSDPTYLREFQPSIQPGFWKLPNDWTRTNASLVYPWLEPLDSFSEESSDVCLVQLLGTGTDSSQPCRLSNFCRTLMTKAGCSGYSLSHQLLFFLWARMQGCTEGLFLQSQHYMDIFCANMMELNHRAEAVGYAYPTQDLFMENIMFCGMAGFSDFYKLRWLEAILSWQNPQVGCFGRPDTKGEPSEVPHQQGILRRVRRREKLFADGCSCHNTATAVAALGGFLYILAEYHPDNGDAHPEYYPNHGDPYSSSQSPASNYQDGAAGPDVQRTGRPLSVS", "sequence_length": 385, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8b81f916d8da4e3c0ff07e93a1706947541479185ec71742129df92d59037f1a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UST5.json", "taxon_id": "10090", "uniprot_accession": "Q3UST5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4735-pf15882.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4735-pf15882.yaml" } ], "pfam_ids": [ "PF15882" ], "protein_name": "UPF0764 protein C16orf89", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLGLLLLLLLTALPPLWSSSLPGLDTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQEPLLQPLSLRVGMLGEKLEAAIQRSLHYLKLSDPKYLREFQLTLQPGFWKLPHAWIHTDASLVYPTFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTKPGCSGYCLSHQLLFFLWARMRGCTQGPLQQSQDYINLFCANMMDLNRRAEAIGYAYPTRDIFMENIMFCGMGGFSDFYKLRWLEAILSWQKQQEGCFGEPDAEDEELSKAIQYQQHFSRRVKRREKQFPDSRSVAQAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPYLANFYIFLVETGFHHVAHAGLELLISRDPPTSGSQSVGL", "sequence_length": 402, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c5c9b7c57e192468afd761b41055e5dea0607cc13a7a70f6f4a3573dcd25a460", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6UX73.json", "taxon_id": "9606", "uniprot_accession": "Q6UX73", "uniprot_release": "2026_03" } ], "pfam_id": "PF15882", "short_name": "DUF4735", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15883", "short_name": "DUF4736", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15889", "short_name": "DUF4738", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15893", "short_name": "DUF4739", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4741-pf15897.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15897", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4741-pf15897.yaml" } ], "pfam_ids": [ "PF15897" ], "protein_name": "FAM231A/C-like protein LOC102723383", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSSKGLWKERPSAHTSECFSTTACPVAFILLVWNSQTPAGLQSLCTGRHPSLSARAQRAGPRASREEGTFWTERVGQERWLIRSGSSQNESQEDQGAGLISQAGLKADNRRESSTWANEVEDRRPQCTPALNLTPSHPHPPHSLTTFLRSVIGIQIPPGLVAAGGTVA", "sequence_length": 169, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6f6d4fb8d86acc70df8e8af4140ff769732974699b2b37a8de62a0639e3dc8fa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DMU3.json", "taxon_id": "9606", "uniprot_accession": "P0DMU3", "uniprot_release": "2026_03" } ], "pfam_id": "PF15897", "short_name": "DUF4741", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/thiamine-diphosphokinase-tnr3-from-schizosaccharomyces-pombe-and-simil-cd03676.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd03676", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/thiamine-diphosphokinase-tnr3-from-schizosaccharomyces-pombe-and-simil-cd03676.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4743-ipr031804.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031804", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4743-ipr031804.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4743-pf15916.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15916", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4743-pf15916.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0C026", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00293", "PF15916" ], "protein_name": "Nudix hydrolase 24, chloroplastic", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "43873dc8e8ca27f820a887360fa94b010511ffbc968d288f33fab51c15076619", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MASAFCSLCPTPTSLFSSHALIPTLQWRSSSSSRSPPLHISRVLSVETVPLSPSFTWNDVFENSRKEYVPQNSSDLTGFLEKVDRCNRGLEKLGEFIPFVIEEQIVGYIHKGFTKYLRDFNDIFTFSQYGGHVTLNMMLDKPEERTRAVAHVIKILGNKGIIPGIRNELYPVKPSFNAPAFFSIERAAAPYFGLKGYAIHVNGYVERDGQKFLWIGKRSLAKSTYPGKLDHLVAGGLPHGISVCENLVKECEEEAGISKVLADRAIAVGVVSYMDIDRYCFTRDVLFCYDLELPQDFVPTNQDGEVDSFRLIPVAQVANVVRKTSFFKDSCSLVIIDFLFRHGLIRPESPGYLDLYRRLRNGDCS", "sequence_length": 365, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "43873dc8e8ca27f820a887360fa94b010511ffbc968d288f33fab51c15076619", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C026.json", "taxon_id": "3702", "uniprot_accession": "P0C026", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4743-pf15916.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15916", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4743-pf15916.yaml" } ], "pfam_ids": [ "PF00293", "PF04263", "PF04265", "PF15916" ], "protein_name": "Thiamine pyrophosphokinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAMSSITSAKQLNAEELLDECDSFNGEFVPGTIPFRANGAAIGYVTPLVLEILIKADNFKFNWVYVPGEYIEINASTFEKRTDILAKVLEHWRHNNTFGIADQWRNELYTVYGKSKKPVLAVERGGFWLFGFLSTGVHCTMYIPATKEHPLRIWVPRRSPTKQTWPNYLDNSVAGGIAHGDSVIGTMIKEFSEEANLDVSSMNLIPCGTVSYIKMEKRHWIQPELQYVFDLPVDDLVIPRINDGEVAGFSLLPLNQVLHELELKSFKPNCALVLLDFLIRHGIITPQHPQYLQTLERIHRPLPVPVGKYERGDSFEDTSKKAETCVPAKPQKATHQLAPCKAWLRDYDTDQKFAVLLLNQPIDIPDDRFRTLWKRASIRVCADGGANQLRNYDSSLKPDYVVGDFDSLTDETKAYYKEMGVNIVFDPCQNTTDFMKCHKIIKEHGIDTIFVLCGMGGRVDHAIGNLNHLFWAASISEKNEVFLLTELNVSTLLQPGINHVDCHDNIGLHCGLLPVGQSVYVKKTSGLEWNIEDRICQFGGLVSSCNVVTKATVTIEVNNFIVWTMETRL", "sequence_length": 569, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "48d0b0fc23f923d4d53d8cdf83ebcf30715ca11e8ef47b562efd60fc1f6a6ad1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41888.json", "taxon_id": "284812", "uniprot_accession": "P41888", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/thiamine-diphosphokinase-tnr3-from-schizosaccharomyces-pombe-and-simil-cd03676.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd03676", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/thiamine-diphosphokinase-tnr3-from-schizosaccharomyces-pombe-and-simil-cd03676.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4743-ipr031804.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031804", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4743-ipr031804.yaml" } ], "pfam_ids": [ "PF15916" ], "protein_name": "Uncharacterized protein YJR142W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKVEKSSKGLEVLVRTQEDDLEGFSFLEIMDRVDPLPLDFENYKNFKEGIYYMCTHDGTKIGFVLKFAINEMETVCSEIFEETFQLDESRHELRFKSEDFDHRNNLIDQLARKMYLESSLSGVKGWRNEKYAVWVNKKPYVLVERAVAGVLGIITYGIHINGYVLDPKSKKVQFWVPRRSKTKQTWPLMLDNIIAGGLGYPYGIYETVLKESMEEANLEKSVIEDNIKATGSVSYLYFTGDISVTKFNKESDFIVGEVQYVYDLKLSEDIIPKPNDGEVESFNLFSLQETINALRKKEFKPNCALVMVDFLIRHGYITPENEPNYLELVTRMHRRLPFPTLN", "sequence_length": 342, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ce138219b43b86ab84abba83d3f9ed4906525347703dbddc8e44a123f0272213", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47173.json", "taxon_id": "559292", "uniprot_accession": "P47173", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/thiamine-diphosphokinase-tnr3-from-schizosaccharomyces-pombe-and-simil-cd03676.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd03676", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/thiamine-diphosphokinase-tnr3-from-schizosaccharomyces-pombe-and-simil-cd03676.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4743-ipr031804.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031804", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4743-ipr031804.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4743-pf15916.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15916", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4743-pf15916.yaml" } ], "pfam_ids": [ "PF00293", "PF15916" ], "protein_name": "Nudix hydrolase 20, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASGFCSLALTVTTSLFSSHAITRRVLPILRWRSSSMSLSPLRHSRALSAATTVPISSSFTWDDVIETGRAEYNSSDLTGFFEKINRCNRGSEKLGEFIPFVIEEQIVGYIHKRFTEYLREFHDIFTFSQNGSCPDRVDGYVTLNLMLQKPEDRTRAVADVIKILGDKGIIPGIRNELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKLLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGGNLVKECEEEAGISRAIADRAIAVGAVSYLDIDQYCFKRDVLFCYDLELPEDFVPKNQDGEVESFKLIPVAQVASVIKKTSFFKANCSLVIIDFLFRHGFIRPESSGYLDLYQRLRNRDCS", "sequence_length": 374, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bac4d3c4fad8f0c56b5f309edfab991a1ed0eb8950d7879c4ea4564cf4aca00a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8VXZ0.json", "taxon_id": "3702", "uniprot_accession": "Q8VXZ0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15916", "short_name": "DUF4743", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15918", "short_name": "DUF4744", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/ccr4-not-complex-binding-go1905762.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905762", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/ccr4-not-complex-binding-go1905762.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4745-ipr031813.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031813", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4745-ipr031813.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4745-pf15923.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15923", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4745-pf15923.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O15063", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15923" ], "protein_name": "Granule associated Rac and RHOG effector protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d4f9fb52d958131e8f1a47fa7caa324f0d1dc1fa2e1dc003f9cebee2ef10123a", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MYCCSAQDSKMDYKRRFLLGGSKQKVQQHQQYPMPELGRALSAPLASTATTAPLGSLTAAGSCHHAMPHTTPIADIQQGISKYLDALNVFCRASTFLTDLFSTVFRNSHYSKAATQLKDVQEHVMEAASRLTSAIKPEIAKMLMELSAGAANFTDQKEFSLQDIEVLGRCFLTVVQVHFQFLTHALQKVQPVAHSCFAEVIVPEKKNSGSGGGLSGMGHTPEVEEAVRSWRGAAEATSRLRERGCDGCLAGIEVQQLFCSQSAAIPEHQLKELNIKIDSALQAYKIALESLGHCEYAMKAGFHLNPKAIEASLQGCCSEAEAQQTGRRQTPPQPMQCELPTVPVQIGSHFLKGVSFNESAADNLKLKTHTMLQLMKEAGCYNGITSRDDFPVTEVLNQVCPSTWRGACKTAVQLLFGQAGLVVVDTAQIENKEAYAPQISLEGSRIVVQVPSTWCLKEDPATMSLLQRSLDPEKTLGLVDVLYTAVLDLNRWRAGREQALPCIQIQLQREICDFGNQADLPSGNGNKSSGGLQKTFSKLTSRFTKKASCTSSSSSTNYSIQNTPSKNIFIAGCSEEKAKMPGNIDTRLQSILNIGNFPRTTDPSQSAQNSSNTVANGFLMERRENFLHGDDGKDEKGMNLPTDQEMQEVIDFLSGFNMGQSHQGSPLVTRHNSAATAMVTEQKAGAMQPQQPSLPVPPPPRAPQAGAHTPLTPQPGLAPQQQSPKQQQPQVQYYQHLLQPIGPQQPPPQPRAPGKWVHGSSQQPAQAVGAGLSPLGQWPGISDLSSDLYSLGLVSSYMDNVMSEVLGQKPQGPRNNTWPNRDQSDGVFGMLGEILPFDPAVGSDPEFARYVAGVSQAMQQKRQAQHGRRPGNPRGNWPPMDDAHRTWPFPEFFTEGDGLHGGWSGAQGDSASSSDETSSANGDSLFSMFSGPDLVAAVKQRRKHSSGEQDTSTLPSPPLLTTVEDVNQDNKTKTWPPKAPWQHPSPLPSTLPSPSAPLYAVTSPGSQWNDTMQMLQSPVWAATNDCSAAAFSYVQTPPQPPPPPAHKAAPKGFKAFPGKGERRPAYLPQY", "sequence_length": 1070, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d4f9fb52d958131e8f1a47fa7caa324f0d1dc1fa2e1dc003f9cebee2ef10123a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O15063.json", "taxon_id": "9606", "uniprot_accession": "O15063", "uniprot_release": "2026_03" } ], "pfam_id": "PF15923", "short_name": "DUF4745", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15928", "short_name": "DUF4746", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15931", "short_name": "DUF4747", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15932", "short_name": "DUF4748", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4749-pf15936.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4749-pf15936.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O00151", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00412", "PF00595", "PF15936" ], "protein_name": "PDZ and LIM domain protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "35583db46f26e270e0ea8d841c0c113d3218a65ac07c6c8c71ee1760594cda6d", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTTQQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSEHKVWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRSAMPFTASPASSTTARVITNQYNNPAGLYSSENISNFNNALESKTAASGVEANSRPLDHAQPPSSLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVTPPEGYEVVTVFPK", "sequence_length": 329, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "35583db46f26e270e0ea8d841c0c113d3218a65ac07c6c8c71ee1760594cda6d", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/O00151.json", "taxon_id": "9606", "uniprot_accession": "O00151", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4749-pf15936.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4749-pf15936.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/lim-domain-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00478", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/lim-domain-1.yaml" } ], "pfam_ids": [ "PF00412", "PF00595", "PF15936" ], "protein_name": "PDZ and LIM domain protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRIHIDPEIQDGSPTTSRRPSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPARGLPRSRDCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPRNLKPTASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERLYCESHAKARVKPPEGYDVVAVYPNAKVELV", "sequence_length": 330, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2bb75cd1b63a5ca827e68aca9c11ab59e01e154db61ac9254315574b0298638d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P50479.json", "taxon_id": "9606", "uniprot_accession": "P50479", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4749-pf15936.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15936", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4749-pf15936.yaml" } ], "pfam_ids": [ "PF00412", "PF00595", "PF15936" ], "protein_name": "PDZ and LIM domain protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWVGDELYCEKHARQRYSAPATLSSRA", "sequence_length": 352, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b454a91e5704db4db76bf8745348c216ad86a4a3e2c034ab0993295793a04d1a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96JY6.json", "taxon_id": "9606", "uniprot_accession": "Q96JY6", "uniprot_release": "2026_03" } ], "pfam_id": "PF15936", "short_name": "DUF4749", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4750-pf15938.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4750-pf15938.yaml" } ], "pfam_ids": [ "PF15938" ], "protein_name": "Small integral membrane protein 13", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWQSVGLTVLVIVATLICVLLFMLFGWYVVWQLFLSKFKFLRELVGDTGSPQAETEPSESESERSSPPTPRQRPKTARQRVIPPDSTT", "sequence_length": 88, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3f10f61675506c98e9c3a6c60ecd7e83bb133cef2ce954fc006356871730398d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B8JJV5.json", "taxon_id": "7955", "uniprot_accession": "B8JJV5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4750-pf15938.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4750-pf15938.yaml" } ], "pfam_ids": [ "PF15938" ], "protein_name": "Small integral membrane protein 13", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWHNVGLTLLVFVATLLIVLLLMVCGWYFVWHLFLSKFKFLRELVGDTGSQEGDNEQPSGSEAEEDPSASPHKMRSARQRRPPVDDGH", "sequence_length": 88, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87bfbbc0009456a651398b1e8a1f77351ca13daea728190ffdadd253dca611f6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D3ZR35.json", "taxon_id": "10116", "uniprot_accession": "D3ZR35", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4750-pf15938.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15938", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4750-pf15938.yaml" } ], "pfam_ids": [ "PF15938" ], "protein_name": "Small integral membrane protein 13", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWHSVGLTLLVFVATLLIVLLLMVCGWYFVWHLFLSKFKFLRELVGDTGSQEGDHEPSGSETEEDTSSSPHRIRSARQRRAPADEGHRPLT", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dffc5fd8165c4b56b0fa5fd17287d15809cc2afbaeb909d66668e926ac53c1fb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DJ93.json", "taxon_id": "9606", "uniprot_accession": "P0DJ93", "uniprot_release": "2026_03" } ], "pfam_id": "PF15938", "short_name": "DUF4750", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15942", "short_name": "DUF4751", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15944", "short_name": "DUF4752", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15946", "short_name": "DUF4754", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15947", "short_name": "DUF4755", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15948", "short_name": "DUF4756", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4757-ipr031865.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031865", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4757-ipr031865.yaml" } ], "pfam_ids": [ "PF15949" ], "protein_name": "Uncharacterized protein CG43427", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEATDQEVMLEGREDLMSTSATSSTNGGDTNGCGKKLSVTSPDPTPYVTKQRVTRPTPPAPSKNPMQFVQIKPCNLYQTAQEQLKKAEEVKKLKEVKKEEPEEWQNNLDNWKSSRRKRVEHIIDRAVETKKLELEEHDRLRRKSKTFTEMMEERAERGGPRGRAKLASLAVYNEDETNDLSDLGIGTSSASGKSSLSGDYDNNSVMSDHAAELDKAIGAASSVAAGVTAQNVDEQLNHINRNGSNGNHGNGAAVGQTGPSNSSKSAGRQYISSPGYDTSSSNAQASSPDLCEYTYEGAIQDYKQRVQRASSNGNGNANGKLIGEHIAYPTRRGSKIEDRLSGFEVTSPSDTQEGVEKQKVDVPKVDISKRKEIFEQAKAEVSNGGAPAAPKLVFRDGLTNGNSATTAPKSEVRRLSGDISSIRDRMQSLEQQRKAFSSSKSVDVPVPPLKQRLNSLQQSVAKEEQKKPPLVALIDARQLEIMRGEEERMRQQQQKEKHSPSQTTLCAPKPAPPALIIEEPPVADTNDDSGIQEDTADELQQQQQLNAAIAALALEERQLEEAANAVNQIEAEFDELTDLHPSPLPPSPALPAVQQSLQQPTVAQVPAQAVNQAAAPPLRDMEFSVSCTNNFIEPAKISPCDVNVVAASAVSVSKSGPTPNPTSTPNMVSSSPNCNLRRKPSNEMVHHRNLLKMFKETFQNDDDLKEVCEIVTSPGQFTQIIDFSKRPSNPPIPIPTLLPTSTPIPTQIPRPLGKPPMSPKAVRLASSPKGHINPLSSPTNSGFSPPQFSINGRVEIFNSRQLDKPPTPPAPPKKTVRSEHPLKEAVPSPEVVMCAPPMTIVDPDELPKPNTVKALSNCFSQSDSKSLTSPIMSPKPLPSGRIPQITPPASPKPPKRVQLDEVDRSSGDYAPVVGQTKAIVHTPPSKINARANQTLDPLAPNDSLCLHTSSPSEIPSLKACSPNESSLFKLASSRPTSPSVDVASCQKFLNREAPKDIQLAEEDRKRMDQFAVEEMPCDKIDVTKSPQPNTGFQIVTEDLVKKCDGKNISEAVRDLDVPPSQEDIALCAGLLDCLAPAQEPICDSIDVRNGPVPATGFQDISEEEVKKCEKHNKNYVITNRPSSPIGSVRAAHSKALMDTCEQIIAEERKASSQMMKTSLPESVEKPSTPLPGRKSKIPIPKPCCISASGTDSISRAGYVPTAPSHLSGSAQQPLIARTHVVETEIKVKEISPPSIPKTPEQTQLHASPTKEKKAKNIFDFLRRNFGHQEEPQHHSTLNETLEKKVVLTSTKSGVDVVNADEFVRVDNSKFYLASELEDVPVPPPLPKTPAPVNIEIRKKITTNEILEENTTEQALTQEISDLLDDEIMKLEN", "sequence_length": 1372, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4354dacf051c8ffa748e9af3599ead78c857ea7db1d55579cc692a4523ce8f81", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0KIC3.json", "taxon_id": "7227", "uniprot_accession": "Q0KIC3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4757-pf15949.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15949", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4757-pf15949.yaml" } ], "pfam_ids": [ "PF00307", "PF00412", "PF15949" ], "protein_name": "LIM and calponin homology domains-containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MACPALGLEVLQPLQPEPPPEPAFAEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLDNTILFLRGCKELGLKESQLFDPSDLQDTSNRVTVKNLDYSRKLKNVLVTIYWLGKAANSCASYGGTTLNLKEFEGLLAQMRKETDDIDSPKRSIRDSGYIDCWDSERSDSLSPPRHGRDDSFDSLDSFGSRSRQTPSPDVVLRGSSDGRGSDSESDLPHRKLPDVKKDDMSARRTSHGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEFRKSWSTATSPLGGERPFRYGPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQLQLINNQLREEDDKWQDDLARWKSRRRSASQDLIKKEEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKERRERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNVSSFPNDPSPMKYLRQQSLPPPKFTATVETTIARTSVPESIASAGTGSPSKIITPNTVPMLTPRPYSQPKNSQEVLKTFKVDGKVSMNGEMAPGDEEGKEKEGPAAAAPGPSLTKSQMFEGVATVHDSPVQVKQGSNSIEINIKKPNSAPQELTAASEETESNGQEDEDGEERPGTGDLEPDSAEPQHFTTTVTRCSPTVALVEFSSNPQLKNEVPEQGQKKPEDEMSGKVELVLSQKVAKPKSPEPEATLTFPFLDKMPETNQLHLPNPSSQADSPSSEKSPGSTPFKFWAWDPEEERRRQEKWQQEQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTISSSSADQLSTSLSVTEGSGTRNKMDLENCPDKENERRQKTPFQENDGDSLLKTREGGLPEEQSLTPSPSANPEISVSKGIHQDPQLEAEAGAPHCGTNPQPAQDPPRNQQIPNPPTSTSEDVKPKTLALEKTINHQMESPGERRKSISGKKLCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCTDCYMRSRSAGQPTTL", "sequence_length": 1057, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e1b344347ff93b51dd06822104b2e98fcab7ec5693ebd6ce799d4534a2220061", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UH68.json", "taxon_id": "10090", "uniprot_accession": "Q3UH68", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4757-pf15949.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15949", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4757-pf15949.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8WWI1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00307", "PF00412", "PF00595", "PF15949" ], "protein_name": "LIM domain only protein 7", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "32d9100ceaabc439bb86cbcefb1a1829c60faa87cc6a95e13bbd5ed1b256d19e", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKKIRICHIFTFYSWMSYDVLFQRTELGALEIWRQLICAHVCICVGWLYLRDRVCSKKDIILRTEQNSGRTILIKAVTEKNFETKDFRASLENGVLLCDLINKLKPGVIKKINRLSTPIAGLDNINVFLKACEQIGLKEAQLFHPGDLQDLSNRVTVKQEETDRRVKNVLITLYWLGRKAQSNPYYNGPHLNLKAFENLLGQALTKALEDSSFLKRSGRDSGYGDIWCPERGEFLAPPRHHKREDSFESLDSLGSRSLTSCSSDITLRGGREGFESDTDSEFTFKMQDYNKDDMSYRRISAVEPKTALPFNRFLPNKSRQPSYVPAPLRKKKPDKHEDNRRSWASPVYTEADGTFSSNQRRIWGTNVENWPTVQGTSKSSCYLEEEKAKTRSIPNIVKDDLYVRKLSPVMPNPGNAFDQFLPKCWTPEDVNWKRIKRETYKPWYKEFQGFSQFLLLQALQTYSDDILSSETHTKIDPTSGPRLITRRKNLSYAPGYRRDDLEMAALDPDLENDDFFVRKTGVFHANPYVLRAFEDFRKFSEQDDSVERDIILQCREGELVLPDLEKDDMIVRRIPAQKKEVPLSGAPDRYHPVPFPEPWTLPPEIQAKFLCVFERTCPSKEKSNSCRILVPSYRQKKDDMLTRKIQSWKLGTTVPPISFTPGPCSEADLKRWEAIREASRLRHKKRLMVERLFQKIYGENGSKSMSDVSAEDVQNLRQLRYEEMQKIKSQLKEQDQKWQDDLAKWKDRRKSYTSDLQKKKEEREEIEKQALEKSKRSSKTFKEMLQDRESQNQKSTVPSRRRMYSFDDVLEEGKRPPTMTVSEASYQSERVEEKGATYPSEIPKEDSTTFAKREDRVTTEIQLPSQSPVEEQSPASLSSLRSRSTQMESTRVSASLPRSYRKTDTVRLTSVVTPRPFGSQTRGISSLPRSYTMDDAWKYNGDVEDIKRTPNNVVSTPAPSPDASQLASSLSSQKEVAATEEDVTRLPSPTSPFSSLSQDQAATSKATLSSTSGLDLMSESGEGEISPQREVSRSQDQFSDMRISINQTPGKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYGKAGSPETKWIDATSGIYNSEKSSNLSVTTDFSESLQSSNIESKEINGIHDESNAFESKASESISLKNLKRRSQFFEQGSSDSVVPDLPVPTISAPSRWVWDQEEERKRQERWQKEQDRLLQEKYQREQEKLREEWQRAKQEAERENSKYLDEELMVLSSNSMSLTTREPSLATWEATWSEGSKSSDREGTRAGEEERRQPQEEVVHEDQGKKPQDQLVIERERKWEQQLQEEQEQKRLQAEAEEQKRPAEEQKRQAEIERETSVRIYQYRRPVDSYDIPKTEEASSGFLPGDRNKSRSTTELDDYSTNKNGNNKYLDQIGNMTSSQRRSKKEQVPSGAELERQQILQEMRKRTPLHNDNSWIRQRSASVNKEPVSLPGIMRRGESLDNLDSPRSNSWRQPPWLNQPTGFYASSSVQDFSRPPPQLVSTSNRAYMRNPSSSVPPPSAGSVKTSTTGVATTQSPTPRSHSPSASQSGSQLRNRSVSGKRICSYCNNILGKGAAMIIESLGLCYHLHCFKCVACECDLGGSSSGAEVRIRNHQLYCNDCYLRFKSGRPTAM", "sequence_length": 1683, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "32d9100ceaabc439bb86cbcefb1a1829c60faa87cc6a95e13bbd5ed1b256d19e", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WWI1.json", "taxon_id": "9606", "uniprot_accession": "Q8WWI1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4757-pf15949.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15949", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4757-pf15949.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9UPQ0", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00307", "PF00412", "PF15949" ], "protein_name": "LIM and calponin homology domains-containing protein 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7f1570be9a2b8a3a2b7c75ad75befe06c57bbbf4bbf5441c46ef3eb8df4aac0a", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MACPALGLEALQPLQPEPPPEPAFSEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLDNIILFLRGCKELGLKESQLFDPSDLQDTSNRVTVKSLDYSRKLKNVLVTIYWLGKAANSCTSYSGTTLNLKEFEGLLAQMRKDTDDIESPKRSIRDSGYIDCWDSERSDSLSPPRHGRDDSFDSLDSFGSRSRQTPSPDVVLRGSSDGRGSDSESDLPHRKLPDVKKDDMSARRTSHGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEYRKSWSTATSPLGGERPFRYGPRTPVSDDAESTSMFDMRCEEEAAVQPHSRARQEQLQLINNQLREEDDKWQDDLARWKSRRRSVSQDLIKKEEERKKMEKLLAGEDGTSERRKSIKTYREIVQEKERRERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNLSSFLNDPNPMKYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKNSQDVLKTFKVDGKVSVNGETVHREEEKERECPTVAPAHSLTKSQMFEGVARVHGSPLELKQDNGSIEINIKKPNSVPQELAATTEKTEPNSQEDKNDGGKSRKGNIELASSEPQHFTTTVTRCSPTVAFVEFPSSPQLKNDVSEEKDQKKPENEMSGKVELVLSQKVVKPKSPEPEATLTFPFLDKMPEANQLHLPNLNSQVDSPSSEKSPVMTPQFKFWAWDPEEERRRQEKWQQEQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTVSSSSADQLSTSSSMTEGSGTMNKIDLGNCQDEKQDRRWKKSFQGDDSDLLLKTRESDRLEEKGSLTEGALAHSGNPVSKGVHEDHQLDTEAGAPHCGTNPQLAQDPSQNQQTSNPTHSSEDVKPKTLPLDKSINHQIESPSERRKKSPREHFQAGPFSPCSPTPPGQSPNRSISGKKLCSSCGLPLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCNDCYMRSRSAGQPTTL", "sequence_length": 1083, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7f1570be9a2b8a3a2b7c75ad75befe06c57bbbf4bbf5441c46ef3eb8df4aac0a", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UPQ0.json", "taxon_id": "9606", "uniprot_accession": "Q9UPQ0", "uniprot_release": "2026_03" } ], "pfam_id": "PF15949", "short_name": "DUF4757", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15950", "short_name": "DUF4758", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15956", "short_name": "DUF4760", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15958", "short_name": "DUF4761", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15959", "short_name": "DUF4762", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15960", "short_name": "DUF4763", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4764-ipr031885.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031885", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4764-ipr031885.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4764-pf15961.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15961", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4764-pf15961.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A8K0R7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15961" ], "protein_name": "Zinc finger protein 839", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "57a67f8c926c3791be9c52c91dd1c1f83ba9212d7e11290abb96d8558f515417", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLLPTTIQPQTARKSQLPRGNSCLVGLHIASPQLLRVQPLVRTEPQSCFLSDLCQPPAQGFVQRPLPALQVVPAKRVPAPKAPDEQGSMLTPLSASDPLAVTSLSSSSAHPFISNLHTRHTEKLKKSLKVKTRSGRVSRPPKYKAKDYKFIKTEDLADGHLSDSDDYSELCVEEDEDQRERHALFDLSSCSLRPKSFKCQTCEKSYIGKGGLARHFKLNPGHGQLDPEMVLSEKASGSTLRGCTEERTLSLTSLGLSMPADPCEGGARSCLVTESARGGLQNGQSVDVEETLPSEPENGALLRSERYQGPRRRACSETLAESRTAVLQQRRAAQLPGGPAAAGEQRASPSKARLKEFLQQCDREDLVELALPQLAQVVTVYEFLLMKVEKDHLAKPFFPAIYKEFEELHKMVKKMCQDYLSSSGLCSQETLEINNDKVAESLGITEFLRKKEIHPDNLGPKHLSRDMDGEQLEGASSEKREREAAEEGLASVKRPRREALSNDTTESLAANSRGREKPRPLHALAAGFSPPVNVTVSPRSEESHTTTVSGGNGSVFQAGPQLQALANLEARRGSIGAALSSRDVSGLPVYAQSGEPRRLTQAQVAAFPGENALEHSSDQDTWDSLRSPGFCSPLSSGGGAESLPPGGPGHAEAGHLGKVCDFHLNHQQPSPTSVLPTEVAAPPLEKILSVDSVAVDCAYRTVPKPGPQPGPHGSLLTEGCLRSLSGDLNRFPCGMEVHSGQRELESVVAVGEAMAFEISNGSHELLSQGQKQIFIQTSDGLILSPPGTIVSQEEDIVTVTDAEGRACGWAR", "sequence_length": 811, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "57a67f8c926c3791be9c52c91dd1c1f83ba9212d7e11290abb96d8558f515417", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8K0R7.json", "taxon_id": "9606", "uniprot_accession": "A8K0R7", "uniprot_release": "2026_03" } ], "pfam_id": "PF15961", "short_name": "DUF4764", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15962", "short_name": "DUF4765", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15973", "short_name": "DUF4766", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15983", "short_name": "DUF4767", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15989", "short_name": "DUF4768", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15992", "short_name": "DUF4769", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15994", "short_name": "DUF4770", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF15995", "short_name": "DUF4771", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4772-pf15997.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15997", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4772-pf15997.yaml" } ], "pfam_ids": [ "PF15997", "PF27556" ], "protein_name": "Zinc finger protein 704", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHTRRLVKRSVIGSRVYAPGLTGDAAPLTGVIQAVKQDNRDASTGHRRNVYTVLMQDGSVKEYSEEEIAQMTAKAPLKSSLKSTCNGGQRDGLTQGQNGGVQRGEALSLSPESTEEPRVLEHKRTGRALETEKDHTRSVSLLEQKRKVVSSSIDVPQARKSEEEVDMDKVTAAMVLTSLSTSPLVRSPPVKVSEGLNGSWKDGGFTPSSYSSSGYWSWSAPSDQSNPSTPSPPLSADSFKPFRMPSLSGPPDDNIDEHDGNSLLFDEPIPRKRKNSMKVMFKCLWKNCGKVLSTAAGIQRHIRTVHLGRNCDSECSDGEEDFYYTEIKLNTDSVADGLSSLSPVSPSVLSPPPALDQRQPDGTNGTKSESSSSTPLSRSAPSALYLVHTDHAYQATTPVTIPSTSSTGFTPSSSSFSISWQSPPVTFTGTSASPTHSRTQGFGEQHSQTIAVLSSPPRAAGSLSRKSRGEGKKCRKVYGMENRDMWCTACRWKKACQRFVD", "sequence_length": 501, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4402f4739dd53ac02f64c986ed944c0009b02ba973f1029d798ffb977b60a204", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q1LY51.json", "taxon_id": "7955", "uniprot_accession": "Q1LY51", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Xenopus laevis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4772-pf15997.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15997", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4772-pf15997.yaml" } ], "pfam_ids": [ "PF15997", "PF27556" ], "protein_name": "Zinc finger protein 395", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASMLSKRLGKRSLLGARVCAPTLSGDGMLVDGQMSIQAEISGGFGAGALEGGYCKEFPEDGSCASAMSPTNRFKLYPGQKVYITHNGKEYVGLVEQHNHVDDEVKLFVLELGLHLCRKMEDVRLAETQKPLSSPIEQSLPTSPGATSTSAQRSVSRSIDVPKRRSDAVEMDEMMAAMVLTSLSCSPIVQSPPCTDSIPAPRVTCDLWKEGGDVSDSGSSTTSGHWSASSGVSTPSPPHTDASPKYTSEVFSASHVDEGFETDPDPFLLDEPAPRKRKNSVKIMYKCLWPNCGKLLRSIVGIKRHVKTQHLGDGLDSDQRKREEDFYYTEVQMKEDPEAEPTPKSPSSATAPLLIQPVPAKPETHAIEVPSVESPLSSALSQSAPGSFWHIQTDHAYQALSSIQIPVSPHIFTSISWAAASSTIPTLSPIRSRSLSFSEQQQQAIKSHLIVASPPRPSNGNRKIRGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD", "sequence_length": 498, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "72bd4e9f16444643219efbb95a89f53c2e002122a4c7ec69c5e834bae6a30cf2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6DFC8.json", "taxon_id": "8355", "uniprot_accession": "Q6DFC8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/znf395-znf704-n-terminal-domain-ipr031940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/znf395-znf704-n-terminal-domain-ipr031940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/znf704-c-pf27556.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27556", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/znf704-c-pf27556.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4772-pf15997.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF15997", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4772-pf15997.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9H8N7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15997", "PF27556" ], "protein_name": "Zinc finger protein 395", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "0031f773b174b3f6945c00e3ab88ec3a0af0cd016d899438ea6078b937927ce1", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": 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"NOT_ASSESSED", "record_id": "InterPro:IPR032008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/e3-ubiquitin-protein-ligase-apd1-4-n-terminal-ipr032008.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/apd1-4-m-pf16041.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16041", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/apd1-4-m-pf16041.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/apd1-4-n-pf16040.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16040", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/apd1-4-n-pf16040.yaml" } ], "pfam_ids": [ "PF13920", "PF16040", "PF16041" ], "protein_name": "E3 ubiquitin-protein ligase APD3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSIRGDLQPLFVMPPPPLDEDCDDIFNSDESSWGLLSLSCFGIIMGLWFFASVCLIFGVYGSETVWLGPNSSILVKPSSIFVKSIKVKELDFSKPGLQLYGFNGQSTPSGYFVNWTESRVLSVSQNSYKGWPYYLNRGTHMNISYNILPKGSAVRLVITEGSQVIGMPFFYRSSLKDIAFRDTAWSWNLIQGSGMIQLDISKSKGYYLTVANLKRKDIEVELDIDVKAVLYDTKQTSYNCSFSNGECSFKMNERYPVENYAVVTSPALGQGVSIDDEWYIELSYQPRLIAYGSFTGVLLSFMLVAIHFCNKLKCCGGEGFLSGDDSVRTCLLADKGDNDCCNDVEASNKSLCAICFDAPRDCCFLPCGHCVSCYQCGTKIKRTKGRCPICRKKMIHVKRIYTA", "sequence_length": 404, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fe05712858031a5a48f11f679d72ffaf3f202eebc39176921aeff665b419fcfa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B3H754.json", "taxon_id": "3702", "uniprot_accession": "B3H754", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/e3-ubiquitin-protein-ligase-apd1-4-middle-domain-ipr032010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/e3-ubiquitin-protein-ligase-apd1-4-middle-domain-ipr032010.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/e3-ubiquitin-protein-ligase-apd1-4-n-terminal-ipr032008.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/e3-ubiquitin-protein-ligase-apd1-4-n-terminal-ipr032008.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/apd1-4-m-pf16041.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16041", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/apd1-4-m-pf16041.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/apd1-4-n-pf16040.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16040", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/apd1-4-n-pf16040.yaml" } ], "pfam_ids": [ "PF13920", "PF16040", "PF16041" ], "protein_name": "E3 ubiquitin-protein ligase APD4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSIRGDLQPLFVMPPPPLDEDCDDIFNSDESSWGLLSLSCFGIIMGLWFFASVCLIFGVYGSETVWLGPNSSILVKPSSIFVKSINAKELDFSKPGLQLYGFNGQSTPSGYFVNWTESRVLSVSQNSYKGWPYYLNRGTHMNISYNILPKGSAVRLVITEGMPFFYRSSLKDIAFRDTAWSWNLIQGSGMIQLDISKSKGYYLTVANLKRKDVEVELDIDVKVVLYDTKQSSYNCSFSNGECSFKMNERSPVENYAVVTSPALGQGVSIDDEWYIELSYQPRLIAYGSFTGVLLSFMLVAIHFCNKLKCCGGEGFLSEDDSVRTCLLADKGDNDCCNDVEASNKSLCAICFDAPRDCCFLPCGHCVSCYQCGTKIKRTKGRCPICRKKIMHVKRIYTA", "sequence_length": 399, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bdf6b8ffb97cbcfbc7cc257f513cabadb5b09c9edaeb53c241883bb7702ca83a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F4ISV9.json", "taxon_id": "3702", "uniprot_accession": "F4ISV9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/e3-ubiquitin-protein-ligase-apd1-4-middle-domain-ipr032010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/e3-ubiquitin-protein-ligase-apd1-4-middle-domain-ipr032010.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/e3-ubiquitin-protein-ligase-apd1-4-n-terminal-ipr032008.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/e3-ubiquitin-protein-ligase-apd1-4-n-terminal-ipr032008.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/apd1-4-m-pf16041.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16041", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/apd1-4-m-pf16041.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/apd1-4-n-pf16040.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16040", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/apd1-4-n-pf16040.yaml" } ], "pfam_ids": [ "PF13920", "PF16040", "PF16041" ], "protein_name": "E3 ubiquitin-protein ligase APD1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSAPSPSSLDFELSPPVLVTMTSTSSSASDNVEGADDDANTHGIFNWRDFSSCWRVSESNLYCFSLALLIWFFASFILIENLYGPKNVWLGPSSSILVEPSSIFVKSIKVKVLDYSEPGLQLYGFYRTPALDCFVNWSESRVLSISHESYKGWPYYLNSGSLLNITYTVKPQGSAVQLVVDEGHQGVPQSVLNDPAYRYNVWSWNLIEGSGMIQLEIRKSSSYYLAVANLKSKDVEVELNIDVKAVLYDTKQSFYNCNFSNGECTFNAMSLVGNSVVVTSPAASQGVSIEDEWYIRFSYQPREIAYVIGTGVVICFMLVAIQFCNRFQCSGGEGHLTEDDSARTRLLADKDDDGSSMGSCDDSYANDDADLEEFMGNDGEASNRSRRLCAICFDVPRDCFFLPCGHSVSCYECGTTMQEADGSCPICRRKMKKVKRIYTV", "sequence_length": 441, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "14ca7e9b1c7167878a4212fa44c32281621dbeafa93083c3088a76c58cca0dd3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0WS06.json", "taxon_id": "3702", "uniprot_accession": "Q0WS06", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/e3-ubiquitin-protein-ligase-apd1-4-middle-domain-ipr032010.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032010", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/e3-ubiquitin-protein-ligase-apd1-4-middle-domain-ipr032010.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/e3-ubiquitin-protein-ligase-apd1-4-n-terminal-ipr032008.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032008", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/e3-ubiquitin-protein-ligase-apd1-4-n-terminal-ipr032008.yaml" } ], "pfam_ids": [ "PF13920", "PF16040", "PF16041" ], "protein_name": "E3 ubiquitin-protein ligase APD2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLPDSLPSSSSSPPVTREETGFHRFEHHGNDSGFDHRDRPPWNRSEYDYRHGSVVASENVRNNSTSEDPWSCVVVVATFCIFVSMTLILGLYGTTNVWLGPNSSFLIKPTSVFVQNVIVEELGNKGSGLILYGLNQAPQLDVLTKWSEVHYLAVPNDSYKYWIQYLNKGSRVKVSYNVESVGSSLYLVIAQGVDGLSEWVQDPTRPDTTLSWHIISDSGYIEQDITKSSSYYVAVGNVYLNEVKATIDIQVEGVLYDTTNAYYNCSFPNDKCTLSVPLFGTNAAVLTSPGPKLNNSKNEFCAKLSYEPRWIAYIVCMGVVTALLLIVSSLFNKRQPVTEDETVDENDDVAPLIPGKDDDNSSWCSSYSSILTSTEELEGAHGEGHSSTRYLCAICYDAPRDCFFLSCGHCVACFQCGTRIAETSGFCPVCRKKIRKVKKIFNV", "sequence_length": 444, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e523d97676115df9e3612d3db4902ed03d9289e76ffc3fe0573ae82aa303d569", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6DBH0.json", "taxon_id": "3702", "uniprot_accession": "Q6DBH0", "uniprot_release": "2026_03" } ], "pfam_id": "PF16041", "short_name": "APD1-4_M", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16042", "short_name": "DUF4794", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4795-ipr032013.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032013", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4795-ipr032013.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4795-pf16043.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16043", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4795-pf16043.yaml" } ], "pfam_ids": [ "PF16043" ], "protein_name": "Uncharacterized protein C16orf96", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFSLTFTELANIAIPQCGVLNFKALHLLLHGILEHIHMAELKKVLSGDEDFLQTSQVVIMPREGDAQPILNPMKRLSNVFDHVVSRLDKLENQLALLQDLPSTAQLLEASQGTARPVQDLWHLIKLRKMVEGHDEVMAKSMQTLQDLLTDLHALQVTITALRKEVDMLKNMLDKVHPERMDIFAEDFKIQNWKMVALQREVASLQNKFKTIPKTEDMVLWSGLHDAMFTSEIGSSPLDLWQSVEQLPEAALAQTTKYLEATRAIQVSEPVQNPQLLQTVWHYEVPELLPEGSSAQAVSLSRAQEPAQPPALTPESAPGCTTEFAPGPAPGTEPVPGLELGLELEPVPALGPVPGPSVTPGSLPAPWPVLGPVPAPGAQPPPLGDWPALPRRWPLPQGWPRVGSWPLWDLGVLRPTQPQPSRAPPPATEFGSLWPRPLQPYQSRQGEALQLAAVQVKGEENDVPSLRGLRERARKDGAPKDRTRKDGVPKDRGGKDVDPKDRAHKDDVPKDRGGKDVDPKDRAHKDDVPKDRGGKDGDPKDRVGKDGAPKEAQPKAPQSALHRLKTTAAIAAAAAAAYAAATSSAAQAAKVAAKFVKDAPATKMAAIATDTAAAGPLGVFADVLGAGPSRGATESQILGDDSEIYEILSPSYSAASIGPDPALSQAMVATKQAMSPEDKKRAVKYSMSHIAQIPVKHDSLKEEFAQLSCNLNQRLSYLANMGGPSSLGTTVDILQKKIGSLQKSRLKEEELERIWGNQIEMMKDRYITLDKAVENLQIRMDEFKTLQAQIKRLEMNKVNKSTMEEELREKADRSALAGKASRVDLETVALELNEMIQGILFKVTIHEDSWKKAMEELSKDVNTKLVHSDLDPLKKEMEEVWKIVRKLLIEGLRLDPDSAAGFRRKLFKRVKCISCDRPVEMMTGPQLITIRKAHLLSRLRPASANSCEYLQRQQMREQQWLQLQDLGIQEDCQQDWGDGPQNATSLKCKSCNLLTLYPYGDPHVIDYDSAEVDILGVDGILYKGRVNSQRGAQPLAVAKELAAVKAPSPPSQSLYDRVHSSALFGAICPPLCPRSSACSAASGPHLTMPARPPSLPPLLLLPPLIPSLRDPQQAPGSTRLSRAPHIESRVGRKPPEEPANP", "sequence_length": 1141, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5e746a521d9f22d5d546ebc5edbee7e51fd842bd67ff9a260c278befc639e2f4", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/A6NNT2.json", "taxon_id": "9606", "uniprot_accession": "A6NNT2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4795-ipr032013.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032013", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4795-ipr032013.yaml" } ], "pfam_ids": [ "PF16043" ], "protein_name": "Uncharacterized protein C16orf96 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFSITFTELVNVAIPQCGVVNFKALHLLLQGILEHIQITELKKVLSGEEDFLQSSPAVFIPREGDAQPVINPMKRLSNIFDQVVDRIEKIESKLAEMQDIPTTSQLVEESYGDKRPAEEMWNNIKIQKRIEGNEKATEKFTRTLQDLLNDLHVLKGSVETVQKDVDTIKFIFEKVNPQKLELLGDDLKTQSRKLGALQREVVTLQNKVRAVPQPEEMVLWSGLHEAMFSPEQQKLEVEPSGVWQSMVSLPGSPLEQPEDAGYIHIPIHSATPVPTMVQLGTTGALREEELTRAVELADSQRPELAQAFVSQTQRLERAQASVSQTQRLERAQASVSQTQRLERAQASVSQTQNLRQTAPFPFPVPGFVPGPDFMPVYGPRPGMATPSAWALPRGLARGNYWPIWGIGPYQPGQGPLQPMGPMPRVPFPAMGSDIPWTQPLPQGTQWYPNIEERGPEYEEQYPEGYQEEMPMDEAPQEEMAVYGALEEEIPTEGAPQDGIPKGRARERISKEKVPKYRTPKERVSYHKASKDVSPEDTGTKDEAPEVKVLKKVVYKDRPQKDKAPEPRRKGPSSAIKKLRSAIASAAAAAAAYAAHANSAAQLAKDAVKAIQDVPANQLAAKAALIASSGPLGAFADFLGAGFGHGATSNTPFDEGELEEFPEEFAAPFNPFTSKPVLSQAMISATQATSPEEKKKAVQYSMGHIAQMPSRHNSLKEEFTNLSTTLNQRLNYLANMGSSGVLGSTVNVLEEKIINLQKARLQEEELERVWGHQIDTMKSHYMVLDRAVERLQIRMDDLKILKAEIERLDLVKADKNVMDLELNEKANRDALASKANRVDLETVAMELNEMIHSMLLKITNYESDWKKALKHLRKDLNTKLVQSDLNSLKKDIEEVWKVVRKLLLEGLRFDPDSAAGFKKKLFERVKCISCDRPVEMMTGPQLITIRNTHGLSRIRPASANSYEYLQRQLIREQQQHLHFQNFGVHEEGQGFQKDWGDGPRNENTLKHKSHDLSTLYPYGDPELMNYDTAEVDILGVDGVLYKGRMSSQFGTRTGEKDIAAVKVSYYTIPNLTDRVRPGSLLAPGYPPLSPRTSITSATTLHSATNTTTARPPSLPPVPQLPPLIPVSRDTQEAPGSAKRLKSPRL", "sequence_length": 1145, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3c925b650c38eedfdcc928c84832329f6c52094a1a5ee8ef753dd0d908aab72d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E9QMW4.json", "taxon_id": "10090", "uniprot_accession": "E9QMW4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4795-ipr032013.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032013", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4795-ipr032013.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4795-pf16043.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16043", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4795-pf16043.yaml" } ], "pfam_ids": [ "PF16043" ], "protein_name": "Glutamine-rich protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENSVSEASLYLQDQLDKLRTIIESMLGSSSTLLSMSITPHKSTACLVPGQIDPEATCPACSLDVSHQVSLLVQRYEQLQDMVSGLAASRPSKKAKLQGQDEELLGHVQSAILQVQGDCEKLNITTSNLIEDHRQKQKDIEVLYQGIERLDKEKANREHLEMEIDEKADKSALASKVSRIQFDATTEQLNHMMQELVAKMSGQEQDWQKLLDKLLAEMDSKLDRLELDPLKQMLEDRWKSLRQQLKERPPLYQADEAAAMRRQLLAHFHCLSCDRPLETTVTGQVISVTPIISSMPGHRSVRPYTVFELEQIRQQSRNLKLGSSFPRVDMSQMERSVGRLHSMHSRMLMDMEKVQVHFGGSVKASSQMIRELLHTQCLSHPCYKRGADTADYSYSTVSRRCGGSHTLTYPYRRNRPQHLSPLEEIQIAMKHDEVDILGLDGHIYKGRMDTRLPGILGKDAPGVTKHNKAKLQQLQQLQQLQQLQQLQQLQQAQHARPHAHRQPSLGNMISPPSRPQSAQMIADSKAVPSGQKKDRPVSSEGRLLQSNVSHSSIPTDIASLQGSQQGLNMHIDVPPGEGLEEPTRGPRSTAAH", "sequence_length": 592, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "082477e061281a931c3fd4cc4d807209552e1f78e357065e3c3ceadfd834024c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3V2A7.json", "taxon_id": "10090", "uniprot_accession": "Q3V2A7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4795-ipr032013.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032013", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4795-ipr032013.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4795-pf16043.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16043", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4795-pf16043.yaml" } ], "pfam_ids": [ "PF16043" ], "protein_name": "Glutamine-rich protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKDAAEELSFARVLLQRVDELEKLFKDREQFLELVSRKLSLVPGAEEVTMVTWEELEQAITDGWRASQAGSETLMGFSKHGGFTSLTSPEGTLSGDSTKQPSIEQALDSASGLGPDRTASGSGGTAHPSDGVSSREQSKVPSGTGRQQQPRARDEAGVPRLHQSSTFQFKSDSDRHRSREKLTSTQPRRNARPGPVQQDLPLARDQPSSVPASQSQVHLRPDRRGLEPTGMNQPGLVPASTYPHGVVPLSMGQLGVPPPEMDDRELIPFVVDEQRMLPPSVPGRDQQGLELPSTDQHGLVSVSAYQHGMTFPGTDQRSMEPLGMDQRGCVISGMGQQGLVPPGIDQQGLTLPVVDQHGLVLPFTDQHGLVSPGLMPISADQQGFVQPSLEATGFIQPGTEQHDLIQSGRFQRALVQRGAYQPGLVQPGADQRGLVRPGMDQSGLAQPGADQRGLVWPGMDQSGLAQPGRDQHGLIQPGTGQHDLVQSGTGQGVLVQPGVDQPGMVQPGRFQRALVQPGAYQPGLVQPGADQIDVVQPGADQHGLVQSGADQSDLAQPGAVQHGLVQPGVDQRGLAQPRADHQRGLVPPGADQRGLVQPGADQHGLVQPGVDQHGLAQPGEVQRSLVQPGIVQRGLVQPGAVQRGLVQPGAVQRGLVQPGVDQRGLVQPGAVQRGLVQPGAVQHGLVQPGADQRGLVQPGVDQRGLVQPGVDQRGLVQPGMDQRGLIQPGADQPGLVQPGAGQLGMVQPGIGQQGMVQPQADPHGLVQPGAYPLGLVQPGAYLHDLSQSGTYPRGLVQPGMDQYGLRQPGAYQPGLIAPGTKLRGSSTFQADSTGFISVRPYQHGMVPPGREQYGQVSPLLASQGLASPGIDRRSLVPPETYQQGLMHPGTDQHSPIPLSTGLGSTHPDQQHVASPGPGEHDQVYPDAAQHGHAFSLFDSHDSMYPGYRGPGYLSADQHGQEGLDPNRTRASDRHGIPAQKAPGQDVTLFRSPDSVDRVLSEGSEVSSEVLSERRNSLRRMSSSFPTAVETFHLMGELSSLYVGLKESMKDLDEEQAGQTDLEKIQFLLAQMVKRTIPPELQEQLKTVKTLAKEVWQEKAKVERLQRILEGEGNQEAGKELKAGELRLQLGVLRVTVADIEKELAELRESQDRGKAAMENSVSEASLYLQDQLDKLRMIIESMLTSSSTLLSMSMAPHKAHTLAPGQIDPEATCPACSLDVSHQVSTLVRRYEQLQDMVNSLAVSRPSKKAKLQRQDEELLGRVQSAILQVQGDCEKLNITTSNLIEDHRQKQKDIAMLYQGLEKLEKEKANREHLEMEIDVKADKSALATKVSRVQFDATTEQLNHMMQELVAKMSGQEQDWQKMLDRLLTEMDNKLDRLELDPVKQLLEDRWKSLRQQLRERPPLYQADEAAAMRRQLLAHFHCLSCDRPLETPVTGHAIPVTPAGPGLPGHHSIRPYTVFELEQVRQHSRNLKLGSAFPRGDLAQMEQSVGRLRSMHSKMLMNIEKVQIHFGGSTKASSQIIRELLHAQCLGSPCYKRVTDMADYTYSTVPRRCGGSHTLTYPYHRSRPQHLPRGLYPTEEIQIAMKHDEVDILGLDGHIYKGRMDTRLPGILRKDSSGTSKRKSQQPRPHVHRPPSLSSNGQLPSRPQSAQISAGNTSER", "sequence_length": 1663, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70752538557c82e8941c09995085e8606fe29b3da421e495ba05d54124df0b37", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H0J4.json", "taxon_id": "9606", "uniprot_accession": "Q9H0J4", "uniprot_release": "2026_03" } ], "pfam_id": "PF16043", "short_name": "DUF4795", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mkrn2-opposite-strand-protein-like-c-terminal-ipr053921.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053921", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mkrn2-opposite-strand-protein-like-c-terminal-ipr053921.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mkrn2-opposite-strand-protein-like-n-terminal-ipr053922.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053922", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mkrn2-opposite-strand-protein-like-n-terminal-ipr053922.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4796-c-pf16044.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16044", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4796-c-pf16044.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4796-n-pf22795.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22795", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4796-n-pf22795.yaml" } ], "pfam_ids": [ "PF16044", "PF22795" ], "protein_name": "MKRN2 opposite strand protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHCAEAGKALIKFNHCEKYIYSFSVPQCCPLCQQDLGSRKLEDAPVSIANPFTNGHQEKCSFLLRPTQGTFLREYDGRSDLHVGITNTNGVVYNYSAHGVQRDGEGWEESISIPLLQPNMYGMMEQWDKYLEDFSTSGAWLPHRYEDNHHNCYSYALTFINCVLMAEGRQQLDKGEFTEKYVVPRTRLASKFITLYRAIREHGFYVTDCPQQQAQPPEGGGLC", "sequence_length": 223, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a14ec25544b5dd22dffb7084aa78a9d114bfcb4fd4a4ff335daa69f504250a5f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/H3BPM6.json", "taxon_id": "9606", "uniprot_accession": "H3BPM6", "uniprot_release": "2026_03" } ], "pfam_id": "PF16044", "short_name": "DUF4796_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4797-ipr032050.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032050", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4797-ipr032050.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pan3-c-terminal-knob-domain-ipr041332.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041332", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pan3-c-terminal-knob-domain-ipr041332.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pan3-ck-pf18101.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18101", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pan3-ck-pf18101.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4797-pf16051.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16051", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4797-pf16051.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-10-287-3700-1-10-287-3700.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.10.287.3700", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-10-287-3700-1-10-287-3700.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/1-20-5-5160-1-20-5-5160.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.5.5160", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/1-20-5-5160-1-20-5-5160.yaml" } ], "pfam_ids": [ "PF16051", "PF18101" ], "protein_name": "PAN2-PAN3 deadenylation complex subunit PAN3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCSTYGLLSFEFSDTAAMDPIFFSPTNGIPSESKLATYMNRQNVATPSGYGLNNGFSLLNLDSPLNKKSQVTPQSPEFIPTRLGSTPNFYAPYHNAPMQLSNGLNGVNGLTAAAAAAAAAAAAAAAAVPSSTSSASSASVTISKTANGGASMLALQKTASIASVTIAQQQPQHPQKQQQHPPSVGGGAVSAASAPIAISGAPPNPAAAPFVSSMSAQTPLKGRGAMMRQESPTAAMISGAGPGEKSPPHGMTPHGASPIPSALPTSVHQENVGGTIYFYPTANAQNSQPVVNSMVVDGTHPALHGVSAVAPMSAGVPAAMMYTGHVYPGPSSNVVTMQPKTLLESAFFMPDEMRAEVLARNEISNLIMDAAEAAQHALPLEVENYHALYPLEPPAQPLHAKLTFPATTYRATHNTTGYKYCLRRIHGFRLQSTKCMTLVEMWKKLQHTNVVQLREVFTTKAFGDNSLVLVYDYHPGSQTLLAKYFTPAPETNGYTDPFQGEARPFSHKSNMQRTSNGPLLPEATIWSIIMQLTAGLKAIHHAGLACKVLDPTKIIVTGKRVRFSSCCISDITQFDPNASNPLALVNMHQQDDLTALGRLVLALACRCLQSVQRDNVQSSIDMVTRNYSTDLRNFIVYLFTTNNRRSVTDLMPMIGARFYTQLDALQSKIDMQEDELAKEMENGRLYRILVKLNSINERPDFNLDCTWSETGDRYMLKLFRDYLFHSVTEDGRPWLDHAHIVQCLNKLDAGSIERVQLMSRDEQSVLIVSYAELKNCLENAFSELMSSAAN", "sequence_length": 790, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "09224e459b280ccc6337e9da55e4a62cf09ff9aeeeb0f9482b79604fd6756dcb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q95RR8.json", "taxon_id": "7227", "uniprot_accession": "Q95RR8", "uniprot_release": "2026_03" } ], "pfam_id": "PF16051", "short_name": "DUF4797", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16055", "short_name": "DUF4798", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16056", "short_name": "DUF4799", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyostelium discoideum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4800-pf16057.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4800-pf16057.yaml" } ], "pfam_ids": [ "PF00400", "PF02138", "PF14844", "PF16057", "PF23295" ], "protein_name": "BEACH domain-containing protein lvsA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFRRFKDLIGTSEDPTPQVPHSPGHPPHQPPQQQQQQQQQQQQQQQQQQQQQQQQQQPQPQQPLSPRSVSSPIGSTTSSNSTSSFSSPVRKYSSATEESSSINSNNNNNNNKNNNNNNNSNIIESNINVWTIMIGSEVEVIRSQATAQKLKLLWQEFLSSKSDKDKVMRLNKLLPYFIGLYEDKKIDTKSPMVDIFGNNSKSFSFAISRRLVKDINEIMKQANSPQQPPQPPQLIKETIAKEIYKFFSTTSGQVSGFELLYSIEILSESNTSCAEAMAEASIPSMLVRCLQYFFLVPYTTMMETTKGIIEEKLIRTLCFLSKQKSAIEELQKTDTLSTLFALMSNECPPSHRPLRAKIGSFGLELTDLYPPTITYINSKRVIANIIKDLTNYYMFTPESYVTLCRIIIKILSESSKKSTILLDEFQRNDGYTFLVDSLFRLESSKDKPALFEQLLDSICSLVYIGYGNVSLPVENSSVPYQTSINNIKEISNQNYISKNGNAFKVLERYFLKSNYEENRVKILDRILSVYSSNTVNFILLQHTSTLTKFIQEYESLSNGLKYHVMKIVCFVVTVLNCVPFQELSTFSLLVGENPSFYTLEMINQLITTLVNFEFRYKHIFRETGLLDILVKVIDVIAQDIIRLNNSKKIDDDDENNNNNNNNNNNNNNNNNNNNDNDNNNNNDNNNEENGSGSNGPIVPCMTGNGEKEADSNDQALNSIIKVESFQILLDSLFILISENPDNISLIRSFSIFNILLRFLPYSSVRGKSLRILQQLIKYDPEPTQKEFDGLIKVLTSVNKENYPMKSDILNATRKLFNISKHARDSFREHGGFVSIISVFISLESSFSPNRKDSRNWDMEKLELIESICRCTTSALCGNVINRENFEQQIGYKTFSSCLIMTGVLGTEFSKSVVDFIFDMVTENLNASDQISNQMIINNVESFNVILDIIPHIENKDFRLQIISRINKMAEYGRYNQEALSKLSIPDWILSRFPSNLSNANDPLQPLLLSLIQTVGANCLSGSELRQFVKLLQPEHSPEVLLKILSSMAKSPPTPPYFEFNLSKIPFGYIRVPITERAWPPTNGYTIMFWLYIDKFPTVNNNNNNNNSSNNSNNSNNSNNNNNNNNNNDQIDLVHIYSDDKKSSLYIYLKNGIITVNIINSSKYVIEIPSYKFVEGKWYHIGIVHARRLLGGTDFKLFVDGFLKYTATKAQYPAQITSGSMLICDIGVSNQNRFPTDSIWRIGTFYLLEDSLGAKHINTIYFLGPNYASNFKGRFSPYQTYEIVNSANLMAIKDLDYGDQLGPLNLAKVSMQIDENKILVGLCASNKLIRTNNSSKVVYNEIFNGIINELSQNHGVALNVFSSPNGTSPNLTGLQNNNNNNNNSGGSNSKKDLEGRVEIINQADLTTKLRGVLIGSVEAFRRNKVADSIKKIGGMPISLLLLEKANSEETLFDSLGLLVGLIQYHPTNTHEMSQINGYELLAWVLKKKASLGLFNSNILELLFDLIGINGNCSTTITSRAPQEGTVANWNACKYIMMNWDIWRLTTPALQRHVINGYNSLIVNNIQRRFNIDSLRKVNVIQEIFDILSSSTNEEPLPESVASSVINVLYNILSYGGLIEDDIRQISAFLISHLHKDIPTPSSSSSSSSTSSTSSRRKSIHRSKLATMELSNTATIQLVNHVFYTFLKVVSNCQTQETAAIFRRVSSYWCFFFIDENLPPLTVSLALRVTCIFFLYKYDYCSTFIKKSGFKLLEKVLPSLSGHQEIYLCLLHLLLGGDPKLLVDLDLSSSSGGAGGTTIVFHELLRIFTPFEKSLYCIEAAQLILSLIKRSYEDNYQYLEQKQQELQNANQGLDNDELLSSLISNVNINNSINNNDNSNSPLSTFQTISRSVSSSSISSNISSSSSSSTLVNSSNSNNNNNTPTSGLASTITKFGNLWNKFEEKTLEFAVTTGAIDENSTGATDAQQAALKKKNRMSIQSSPFQSKNLGTGGDDSVTNTPNGSSLHNRVTGMDDDSKLNGALGGGGGGGGGGVSVGDNQPINFNLYDEMLPELKISQFATPEESSNLQYTMLTYFIYLFHENQYFQQECYSQPMVEELISILFPNGKINLPPLYNSTGQTNGIKDRVLDLVVKFLCQIMLSAMRKTSKAISIIEMVLEGAPTTATDEEFILYHSRILLDLMYVVETNITKTEFFDNERVHSNLIKLSSMLVDRVNLDQLVKNNKIIIAKRIFLFIVKILEKLEADRVGLQKTVQSLYKSLNRIILYLINHTTDTDLSFVANHIINHQRIIFSENNLDSDFMNAFCYPLYKLVISDQHEHVDNSIKLWRLLLSLKTSSYIESLATVLQLKVSSGSNQRQSEIIDLKPGFELLRNTSGNGAFNNDEFKLWINDNIQTITQVFEENPKKQHLSFKNNEKKHSSEHTLPSLKSRRTERLSKKQRQDRKDQSHQEEKSKHITKKAQYFVRSESDRRKKIKQLESDKQKFNAIQWENMRAQITRERAVWGPSEPHPLDKWKLDSTEGPYRMRKKMEKNYNFYKNYPYVPPSFDEQNNSLLPIPCSADSETYMNIVGTEEANLLESSYWKFDLLSTNQVITSSTNTSSITNNNNNNNNNNNNNNNNNNNTITKSTSQNANNNNNANNMNQSTSSSSSNTTTTTTPQQSSSQIKVSSPELSSNEITPPTSPVQSSSEDVFKSPKLQSSTVEGQLSRNPSSSELFNDNSSTISEENSSLTSASTTLSPPPPSTQTTTTTTTSTPTTQSSVATTTTGNTNEVDEETSTNNQTTSEDETQAFIRLLDPYDQSYLKDAMRKDPRLNGIMYNCGSVDGMDKIEGILIFCPVYMYIFDGYYKDENTGDISEVEEKINSEWLPEGTVLPMKKKIIHYFLKWAYEDIRDVLKRRYLLRQVALEIFSTDGRNNLVVYRDEPTRDEVYHTLVNNVSSHNTIGGDAQGITGGQTGNDDNDDHHGGGGGRGVRDRFTSIWRKSPLTLKWQQGQISNFQYLMHLNTLAGRSYNDLTQYPVFPWVLSDYESEELDIDDPKVYRDLSKPMGALEESRAQKFRERFENWDDQEPNEHGHKVPKFHYGTHYSSAAIVLYYLIRLEPFTQHFLKLQGGRWDQPDRLFSSITEAWASSSQGSTGVVMELIPEFYYLDEFLVNNNKFNFGTKQGGEPIDDIILPPWAKGSPQEFIKLHRKALESDYVSEHLHEWIDLIFGYRQQGKAADDSLNVFYYLTYEGAVNIDAISDPVEKAATIAQINNFGQTPKQLFDKPHPKRNATLMGLPFYAKALTGNFIKDIGEPVGQIRLINDRATCVGFNKVLLPPNHSKYMLWGLPDGSIRYNTGDKIKVLEDHHDGPLTCLTATEDGRICVSGGSDSLICVYNLKRFSLAKRLSGHTGSITCVSASRPYSIIVSGSDDRTCIIWDLNRLCYVRSLDAHEGPISCIGIHDTTGEIVVCSGTTISVYTVNGELLINYKTSQIANDQITCCIWSKGPEWLGENVLLTGHRDGKVKVWGLETRLLPDNNNSNNNNNNNNNNNNNATQIPSTNNNKLKFKNVIILRATFSNSQSHSTAITSIFLTNDQQKFYTGDITGRVCMWSDNEASQVKQRGWINTDIRGILQSEKK", "sequence_length": 3619, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f35bc4056ca594ddf66bee2d49c233c3553ac80dafbfdcabee697f4cd8366c6f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q55DM1.json", "taxon_id": "44689", "uniprot_accession": "Q55DM1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4800-pf16057.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4800-pf16057.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4704-pf15787.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15787", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4704-pf15787.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/nbch-wd40-pf20426.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20426", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/nbch-wd40-pf20426.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/neurobeachin-pf20425.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20425", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/neurobeachin-pf20425.yaml" } ], "pfam_ids": [ "PF02138", "PF14844", "PF15787", "PF16057", "PF20425", "PF20426" ], "protein_name": "Neurobeachin-like protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAASERLYELWLLYYAQKDLGYLQQWLKAFVGAFKKSISLSSLEPRRPEEAGAEVPLLPLDELHVLAEQLHQADLEQALLLLKLFIILCRNLENIEAGRGQVLVPRVLALLTKLVAELKGCPPPQGRGTQLENVALHALLLCEGLFDPYQTWRRQRSGEVISSKEKSKYKFPPAALPQEFSAFFQESLQNADHLPPILLLRLIHLFCAVLAGGKENGQMAVSDGSVKGLLSVVRGWSRGPAPDPCLVPLALEALVGAVHVLHASRAPPRGPELRALLESYFHVLNADWPAGLSSGPEEALVTLRVSMLDAIPMMLACEDRPVLQATFLSNNCFEHLTRLIQNSKLYLQSRAPPEGDSDLATRLLTEPDVQKVLDQDTDAIAVHVVRVLTCIMSDSPSAKEVFKERIGYPHLQEVLQSHGPPTHRLLQELLNMAVEGDHSMCPPPPIRNEQPVLVLAQWLPSLPTAELRLFLAQRLRWLCDSCPASRATCVQAGLVGCLLETLSTGLALEARCQEQLLALLQALGRVSIRPMELRHLLRPRPGLDSEPGGAEAGKARHAGAVIRTLSGMARHQGPARALRYFDLTPSMAGIMVPPVQRWPGPGFTFHAWLCLHPMDTAPTPAPTRPLQRKQLYSFFTSSGSGFEAFFTAAGTLVVAVCTRKEYLTMSLPEVSFADSAWHCVAIVHVPGRRPFSQNLVHVYKDGHLVKTAPLRCPSLSEPFSSCCIGSAGYRTTTTTTGLPTPPVPATLAYTHPALTRSQSVPASTGLGWGSGLVAPLQEGSIDSTLAGTQDTRWGSPTSLEGELGAVAIFHEALQATALRTLCTLGPNETAPFKPEGELHELSTRLLLHYSPQACKNNICLDLSPSHGLDGRLTGHRVETWDVKDVVNCVGGMGALLPLLERVAAQPKEAEAGPAETHDLVGPELTSGHNTQGLVLPLGKSSEERMERNAVAAFLLMLRNFLQGHMVNQESLVQCQGPAIIGALLRKVPSWAMDMNVLMSAQLLMEQVAAEGSGPLLYLLYQHLLFNFHLWTLSDFAVRLGHIQYMSSIVREHRQKLRKKYGVQFILDALRTHYSPQRERPLAADDLRTVQTSLLGLAREFLVRSLSADDVQVTQTMLSFLAATGDDGQAVGALDLLLALLHGSLVQESLAVFLLEPGNLEVLLALLVRPGSLPLLPDRVCKILRRLQQNERLPERSRQRLRLRECGLQGLVACLPEGTVSPQLCQGLYKLFLGADCLNLSDLLAVVQLSLQADLSVRLDICRQLFHLIYGQPDVVRLLARQAGWQDVLTRLYVLEAATAGSPPPSSPESPTSPKPAPPKPPTESPAEPSDVFLPSEAPCPDPDGFYHALSPFCTPFDLGLERSSVGSGNTAGGGGSSGTLTPASQPGTPSPLDGPRPFPAAPGRHSSSLSNVLEDGSLPEPTISGDDTSNTSNPQQTSEEELCNLLTNVLFSVTWRGVEGSDEAAWRERGQVFSVLTQLGASATLVRPPDCIKRSLLEMMLESALTDIKEAPVGVLASLTQQALWLLRLLQDFLCAEGHGNQELWSEKLFEGVCSLLDRLGAWPHLANGTADLREMAQIGLRLVLGYILLEDPQLHAQAYVRLHMLLQTAVPARREEACYVLSKLEAALGRVLNTSSLESATDEAGSPLAAAAAAAAAERCSWLVPLVRTLLDRAYEPLGLQWGLPSLPPTNGSPTFFEDFQAFCATPEWRHFIDKQVQPTMSQFEMDTYAKSHDLMSGFWNACYDMLMSSGQRRQWERAQSRRAFQELVLEPAQRRARLEGLRYTAVLKQQATQHSMALLHWGALWRQLASPCGAWALRDTPIPRWKLSSAETYSRMRLKLVPNHHFDPHLEASALRDNLGEVPLTPTEEASLPLAVTKEAKVSTPPELLQEDQLGEDELAELETPMEAAELDEQREKLVLSAECQLVTVVAVVPGLLEVTTQNVYFYDGSTERVETEEGIGYDFRRPLAQLREVHLRRFNLRRSALELFFIDQANYFLNFPCKVGTTPVSSPSQTPRPQPGPIPPHTQVRNQVYSWLLRLRPPSQGYLSSRSPQEMLRASGLTQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPTLDLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPAGTIDKFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPADVKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWASSPEDFIQQHRQALESEYVSAHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVTDERERKALEGIISNFGQTPCQLLKEPHPTRLSAEEAAHRLARLDTNSPSIFQHLDELKAFFAEVVSDGVPLVLALVPHRQPHSFITQGSPDLLVTVSASGLLGTHSWLPYDRNISNYFSFSKDPTMGSHKTQRLLSGPWVPGSGVSGQALAVAPDGKLLFSGGHWDGSLRVTALPRGKLLSQLSCHLDVVTCLALDTCGIYLISGSRDTTCMVWRLLHQGGLSVGLAPKPVQVLYGHGAAVSCVAISTELDMAVSGSEDGTVIIHTVRRGQFVAALRPLGATFPGPIFHLALGSEGQIVVQSSAWERPGAQVTYSLHLYSVNGKLRASLPLAEQPTALTVTEDFVLLGTAQCALHILQLNTLLPAAPPLPMKVAIRSVAVTKERSHVLVGLEDGKLIVVVAGQPSEVRSSQFARKLWRSSRRISQVSSGETEYNPTEAR", "sequence_length": 2754, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ba3926d0d8d54b4a11d4b40482af9313b2d4ac24a34588910a9bb889ca4b6956", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZNJ1.json", "taxon_id": "9606", "uniprot_accession": "Q6ZNJ1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4800-pf16057.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4800-pf16057.yaml" } ], "pfam_ids": [ "PF02138", "PF14844", "PF15787", "PF16057", "PF20425", "PF20426" ], "protein_name": "Neurobeachin-like protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAASERLYELWLLYYAQKDLGYLQQWLKAFVGVFEKTISLSSLEPRRPEEAGAEVPLLPLDALHALAEQLDQDDLDQALLLLKLFIILCRNLENVEAGWGQVLVPRVLALLTVLMAELKGSSQESHGTQLENVALHALLLCEGLFDPYQTWRRQLTGEVISSKEKSKYKFPPAALPCEFGAFFQENLQDAERLPPTLLLRLIHLFGAILAGGKANGQMAVSAGSVQGLLGVVRGWGRGPAQDPQQVPLALRALVGAVHVLHASRAPPRGPELRTLLEGYFHILNADWPTSPSSSPEEALVTLRVSMLDAIPMMLACEDRPVLQATFLSNNCFEHLIRLIQNSKLYLQARAPPEGDSDLATWLLTEPDVQKVLDQDTDAIAVHVVRVLTCIMSGSPSAKEVFKERIGYQHLQEVLQSHGPPTHRLLQELLNMAVEGDHSMHPPPPIRNEQPVLVLMQWLPALPTAELRLFLAQRLWWLCDSCPASRTTCVQAGLVGYLLETLNTGTALGARCQEQLLALLQALGRVSLRPLELRRLLRPPPGLDSESSGNESQKARHAGAVIRALSGMARHRGPARALRYFDLTPSMAGIMVPPVQRWPGAGFTFHAWLCLQSSEAVPTSAPSRPLQRKQLYSFFTSSGSGFEAFFTAAGTLVVAVCTRKEYVTVNLPEVSFADSAWHCVAIVHVPGRRPFSQNLVNVFKDGHLVKTVPFRFPSLSEPFSSCCIGSAGHRTTTTTTGLPASSVSTALAHTHPSLTRSQSVPASTGLGWGPGLGTPLQEGSVSSTLAGTQDTRWGSPTSLEGELGAVAIFHEALQPSALRVLCSLGPNEPAPFKPEGELHEFGTKLLLHYSPQACKNNICLDLSPGHGLDGRLTGHRVETWDVKDVVNCVGGMGVLLPLLERVAVQPQEAEAGPCETHDLVGPELTSGRNTQGLLLPLGKSSEDRMERNAVAAFLLMLRNFLQNHTVNQESLVQCQGPAIIGALLRKVPSSAMDMNVLMSAQLLMEQAAADGGGPLLYLLYQHLLFNFHLWTLSDFAVRLGHIQYMSSMVREHRQKLRKKYGVQFLLDALRTHYSPQRERPLAADDLRTVQTSLLGLVREFLVRNFSVEDMQVVLNFLAATGDDGQVVGTLELLLTLLQGSPVQDPLAAFLLELGNLEVLLALLVRPKSTPLLTDRVCKILRRLQQNERLPERNRQRIRLHDCGLQGLVASLSEESISPQLCQGLYKLFVGTDCLNLSDLLAVVQLSLQADLSVRLDICRQLFYLIYGQPDVVRLLARQAGWQDVLTRLYVLEAATDSSPPRFLPELPISSELALSPPPTELPADSSDVFLPSESPCPDQDAFYQALSPFSTPFDLGLERASIGSGNTAGGGSSNGTVTPASQPGTPSPLDGPRPFPTAQGRHSSSLSNVLEDGSLLEPNISGDDTSNTSNPQQTPEEELCNLLTNVLFSVTWRGVEGSAEAAWRERGQVFSVLTQLGASATLVRPPDCIKRSLLEMMLESALTDIKEAPPGGLANLSQQALWLLRLLQDFLCAEGHGNQELWSEKLFEGVCNLLDRLGAWPHLANSTADLREMAQIGLRLVLGYILLEDPQLHAQAYVKLHTLLQTAVPTRREEACYVLSKLEAALSRALTTSSSETEHASTAVAASERCSWLVPLVRTLLDRAYGPLGLQWGLPSLPPTNGSPTFFEDFQAFCATAEWRHFIDKQVQPTMSKFEMDTYAKSHDLMSGFWNACYDTLMSSGQRHQRDRIQSRRAFKELVLEPAQRRARVEGLRYASVLKQQAAQHSTALLHWGALWRQLSSPCGAWALRIPPAPHWKLSSAETYSRMRLKLVPNHHFDPHLEASALRDNLGEAPMTPTEETSLPLAVTKEAKISAPPEELPEEQLGEEDLAALESLMEAAELDEKREKLVLSAECQLVTVVAVVPGLLEITTQHVYFYDGSTERVETEEGIGHDFRRPLAQLREVHLRRFNLRRSALELFFIDQSNYFLNFPHKVAASSASSPCQAPRPQLYPIPSHTQLRNQVYSLLLRLRPPTQGYLSSRSPLEMLRASGLTQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPVLDLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPAGTIDKFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPADVKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWAGSPEDFIQKHRQALESEYVSTHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVADERERKALEGIISNFGQTPCQLLKEPHPPRLSAEEAANRLARLDTNSPSIFQNLNQLKAFFAEVVSEAVPLVLALVPHRQSHSFITQSSSDMLVTVSASGLLGTHTWLPYDRNINNYFTFSKDPTMGSPKVQKLLSGPWVSDSGVSAQALAVAPDGKLLFSGGHWDGSLRVTSLPRGRLLNQLSRHLDIVTCLALDTCGIYLISGSRDTTCMVWRLLQQSGLSAGLAPKPVQVLYGHVAAVSCVAISTELDMAVSGSEDGTVIIHTVRRGQFVAALRPPGATLPGPISHLALGAEGQIVVQSSACERPGAQVTYSLHLYSVNGRLRASVTLTEQPTALTVAEDFVLLGTAQCSLHILHLNKLRPAVPPLPMKVPVHSVSVTKERSHVLVGLEDGKLIVVGAGQPSEVRSSQFARRLWRSSRRISQVSSGETEYNPGEAR", "sequence_length": 2742, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b6cfc7e0d41349d24ba92e3087d855e23828c50354607fdf482a173b0019b9dd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZQA0.json", "taxon_id": "10090", "uniprot_accession": "Q6ZQA0", "uniprot_release": "2026_03" } ], "pfam_id": "PF16057", "short_name": "DUF4800", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mga-dom-pf16059.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16059", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mga-dom-pf16059.yaml" } ], "pfam_ids": [ "PF00010", "PF00907", "PF16059" ], "protein_name": "MAX gene-associated protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEKQQIILANQDGGTVTGGAPTFFVILKQPGNGKTDQGILVTNRDARALLSRESSPGKSKEKICLPADCTVGKITVTLDNNSMWNEFHNRSTEMILTKQGRRMFPYCRYWITGLDSNLKYILVMDISPVDSHRYKWNGRWWEPSGKAEPHILGRVFIHPESPSTGHYWMHQPVSFYKLKLTNNTLDQEGHIILHSMHRYLPRLHLVPAEKATEVIQLNGPGVHTFTFPQTEFFAVTAYQNIQITQLKIDYNPFAKGFRDDGLSSKPQREGKQRNSSDQEGNSVSSSPAHRVRLTEGEGSEIHSGDFDPVLRGHEASSLSLEKAPHNVKQDFLGFMNTDSTHEVPQLKHEISESRIVNSFEDDSQISSPSNPNGNFNVVIKEEPLDDYDYELGECPEGITVKQEETDEETDVYSNSDDDPILEKQLKRHNKVDNLEADHPSYKWLPNSPGVAKAKMFKLDAGKMPVVYLEPCAVTKSTVKISELPDNMLSTSRKDKSMLAELEYLPAYIENSDGTDFCLSKDSENSLRKHSPDLRIVQKYTLLKEPNWKYPDILDNSSTERIHDSSKGSTAESFSGKEDLGKKRTTMLKMAIPSKTVTASHSASPNTPGKRGRPRKLRLSKAGRPPKNTGKSLTAAKNIPVGPGSTFPDVKPDLEDVDGVLFVSFESKEALDIHAVDGTTEEPSSLQTTTTNDSGCRTRISQLEKELIEDLKSLRHKQVIHPALQEVGLKLNSVDPTVSIDLKYLGVQLPLAPATSFPLWNVTGTNPASPDAGFPFVSRTGKTNDFTKIKGWRGKFQNASASRNEGGNSEASLKNRSAFCSDKLDEYLENEGKLMETNIGFSSNAPTSPVVYQLPTKSTSYVRTLDSVLKKQSTISPSTSHSVKPQSVTTASRKTKAQNKQTTLSGRTKSSYKSILPYPVSPKQKNSHVSQGDKITKNSLSSTSDNQVTNLVVPSVDENAFPKQISLRQAQQQHLQQQGTRPPGLSKSQVKLMDLEDCALWEGKPRTYITEERADVSLTTLLTAQASLKTKPIHTIIRKRAPPCNNDFCRLGCVCSSLALEKRQPAHCRRPDCMFGCTCLKRKVVLVKGGSKTKHFHKKAANRDPLFYDTLGEEGREGGGVREDEEQLKEKKKRKKLEYTVCEAEPEQPVRHYPLWVKVEGEVDPEPVYIPTPSVIEPIKPLVLPQPDLSSTTKGKLTPGIKPARTYTPKPNPVIREEDKDPVYLYFESMMTCARVRVYERKKEEQRQLSPPLSPSSSFQQQSSCYSSPENRVTKELDSEQTLKQLICDLEDDSDKSQEKSWKSSCNEGESSSTSYVHQRSPGGPTKLIEIISDCNWEEDRNKILSILSQHINSNMPQSLKVGSFIIELASQRKCRGEKTPPVYSSRVKISMPSSQDQDDMAEKSGSETPDGPLSPGKMDDISPVQTDALDSVRERLHGGKGLPFYAGLSPSGKLVAYKRKPSSTTSGLIQVASNAKVAASRKPRTLLPSTSNSKMASSGPATNRSGKNLKAFVPAKRPIAARPSPGGVFTQFVMSKVGALQQKIPGVRTPQPLTGPQKFSIRPSPVMVVTPVVSSEQVQVCSTVAAAVTTSPQVFLENVTAVPSLTANSDMGAKEATYSSSASTAGVVEISETNNTTLVTSTQSTATVNLTKTTGITTSPVASVSFAKPLVASPTITLPVASTASTSIVMVTTAASSSVVTTPTSSLSSVPIILSGINGSPPVSQRPENAPQIPVTTPQISSNNVKRTGPRLLHPNGQIVQLLPLHQIRGSNAQPSLQPVVFRNPGSMVGIRLPAPCKSSETPSSSASSSAFSVMSPVIQAVGSSPTVNVISQAPSLLSSGSSFVSQAGTLTLRISPPETQNLASKTGSESKITPSTGGQPVGTASLIPLQSGSFALLQLPGQKPIPSSVLQHVASLQIKKESQSTDQKDETNSIKREEETKKALPSKDKALDSEANIMKQNSGIIASENTSNNSLDDGGDLLDEETLREDARPYEYSYSTGSHTDEDKDGDEDSGNKNQNSPKEKQTVPEVRAGSKNIDIMALQSIRSIRPQKCVKVKVEPQEGSDNPENPDDFLVLSKDSKFELSGNQVKEQQSNSQAEAKKDCEDSLGKDSLRERWRKHLKGPLTQKYIGISQNFNKEANVQFFTEMKPCQENSEQDISELLGKSGTIESGGVLKTEDGSWSGISSSAAFSIIPRRATKGRRGSRHFQGHLLLPREQMKPKQQTKDGRSSAADFTVLDLEDEDEEDEKTDDSLDEIVDVVSGYQSEEVDVEKNNYVDYLEDDEQVDVETIEELSEEINFPYKKTTATHTQSFKQQCHSHISADEKASEKSRKVSLISSKLKDDCWGDKPHKETEAFAYYRRTHTANERRRRGEMRDLFEKLKITLGLLHSSKVSKSLILNRAFSEIQGLTDQADKLIGQKNLLSRKRSILIRKVSSLSGKTEEVVLKKLEYIYAKQQALEAQKRKKKLGSDEFCVSPRIGTQLEGSSASSVDLGQMLMNNRRGKPLILSRKRDQATENASPSDTPHSSANLVMTPQGQLLTLKGPLFSGPVVAVSPALLEGGLKPQVASSTMSQSENDDLFMMPRIVNVTSLAAEEDLGGMSGNKYRHEVPDGKPLDHLRDIAGSEASSLKDTERISSRGNHRDSRKALGPTQVLLANKDSGFPHVADVSTMQAAQEFIPKNMSGDVRGHRYKWKECELRGERLKSKESQFHKLKMKDLKDSSIEMELRKVASAIEEAALHPSELLTNMEDEDDTDETLTSLLNEIAFLNQQLNDDSGLAELSGSMDTEFSGDAQRAFISKLAPGNRSAFQVGHLGAGVKELPDVQEESESISPLLLHLEDDDFSENEKQLGDTASEPDVLKIVIDPEIKDSLVSHRKSSDGGQSTSGLPAEPESVSSPPILHMKTGPENSNTDTLWRPMPKLAPLGLKVANPPSDADGQSLKVMPALAPIAAKVGSIGHKMNLAGIDQEGRGSKVMPTLAPVVPKLGNSGAPSSSSGK", "sequence_length": 3003, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d7d799d73c283c6aaa8f179c5891adbfe6a7406d705abb95aaeff2fe18a257c6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2AWL7.json", "taxon_id": "10090", "uniprot_accession": "A2AWL7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/tbox-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS01264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/tbox-2.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/mga-dom-pf16059.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16059", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/mga-dom-pf16059.yaml" } ], "pfam_ids": [ "PF00010", "PF00907", "PF16059" ], "protein_name": "MAX gene-associated protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEKQQIILANQDGGTVAGAAPTFFVILKQPGNGKTDQGILVTNQDACALASSVSSPVKSKGKICLPADCTVGGITVTLDNNSMWNEFYHRSTEMILTKQGRRMFPYCRYWITGLDSNLKYILVMDISPVDNHRYKWNGRWWEPSGKAEPHVLGRVFIHPESPSTGHYWMHQPVSFYKLKLTNNTLDQEGHIILHSMHRYLPRLHLVPAEKAVEVIQLNGPGVHTFTFPQTEFFAVTAYQNIQITQLKIDYNPFAKGFRDDGLNNKPQRDGKQKNSSDQEGNNISSSSGHRVRLTEGQGSEIQPGDLDPLSRGHETSGKGLEKTSLNIKRDFLGFMDTDSALSEVPQLKQEISECLIASSFEDDSRVASPLDQNGSFNVVIKEEPLDDYDYELGECPEGVTVKQEETDEETDVYSNSDDDPILEKQLKRHNKVDNPEADHLSSKWLPSSPSGVAKAKMFKLDTGKMPVVYLEPCAVTRSTVKISELPDNMLSTSRKDKSSMLAELEYLPTYIENSNETAFCLGKESENGLRKHSPDLRVVQKYPLLKEPQWKYPDISDSISTERILDDSKDSVGDSLSGKEDLGRKRTTMLKIATAAKVVNANQNASPNVPGKRGRPRKLKLCKAGRPPKNTGKSLISTKNTPVSPGSTFPDVKPDLEDVDGVLFVSFESKEALDIHAVDGTTEESSSLQASTTNDSGYRARISQLEKELIEDLKTLRHKQVIHPGLQEVGLKLNSVDPTMSIDLKYLGVQLPLAPATSFPFWNLTGTNPASPDAGFPFVSRTGKTNDFTKIKGWRGKFHSASASRNEGGNSESSLKNRSAFCSDKLDEYLENEGKLMETSMGFSSNAPTSPVVYQLPTKSTSYVRTLDSVLKKQSTISPSTSYSLKPHSVPPVSRKAKSQNRQATFSGRTKSSYKSILPYPVSPKQKYSHVILGDKVTKNSSGIISENQANNFVVPTLDENIFPKQISLRQAQQQQQQQQGSRPPGLSKSQVKLMDLEDCALWEGKPRTYITEERADVSLTTLLTAQASLKTKPIHTIIRKRAPPCNNDFCRLGCVCSSLALEKRQPAHCRRPDCMFGCTCLKRKVVLVKGGSKTKHFQRKAAHRDPVFYDTLGEEAREEEEGIREEEEQLKEKKKRKKLEYTICETEPEQPVRHYPLWVKVEGEVDPEPVYIPTPSVIEPMKPLLLPQPEVLSPTVKGKLLTGIKSPRSYTPKPNPVIREEDKDPVYLYFESMMTCARVRVYERKKEDQRQPSSSSSPSPSFQQQTSCHSSPENHNNAKEPDSEQQPLKQLTCDLEDDSDKLQEKSWKSSCNEGESSSTSYMHQRSPGGPTKLIEIISDCNWEEDRNKILSILSQHINSNMPQSLKVGSFIIELASQRKSRGEKNPPVYSSRVKISMPSCQDQDDMAEKSGSETPDGPLSPGKMEDISPVQTDALDSVRERLHGGKGLPFYAGLSPAGKLVAYKRKPSSSTSGLIQVASNAKVAASRKPRTLLPSTSNSKMASSSGTATNRPGKNLKAFVPAKRPIAARPSPGGVFTQFVMSKVGALQQKIPGVSTPQTLAGTQKFSIRPSPVMVVTPVVSSEPVQVCSPVTAAVTTTTPQVFLENTTAVTPMTAISDVETKETTYSSGATTTGVVEVSETNTSTSVTSTQSTATVNLTKTTGITTPVASVAFPKSLVASPSTITLPVASTASTSLVVVTAAASSSMVTTPTSSLGSVPIILSGINGSPPVSQRPENAAQIPVATPQVSPNTVKRAGPRLLLIPVQQGSPTLRPVSNTQLQGHRMVLQPVRSPSGMNLFRHPNGQIVQLLPLHQLRGSNTQPNLQPVMFRNPGSVMGIRLPAPSKPSETPPSSTSSSAFSVMNPVIQAVGSSSAVNVITQAPSLLSSGASFVSQAGTLTLRISPPEPQSFASKTGSETKITYSSGGQPVGTASLIPLQSGSFALLQLPGQKPVPSSILQHVASLQMKRESQNPDQKDETNSIKREQETKKVLQSEGEAVDPEANVIKQNSGAATSEETLNDSLEDRGDHLDEECLPEEGCATVKPSEHSCITGSHTDQDYKDVNEEYGARNRKSSKEKVAVLEVRTISEKASNKTVQNLSKVQHQKLGDVKVEQQKGFDNPEENSSEFPVTFKEESKFELSGSKVMEQQSNLQPEAKEKECGDSLEKDRERWRKHLKGPLTRKCVGASQECKKEADEQLIKETKTCQENSDVFQQEQGISDLLGKSGITEDARVLKTECDSWSRISNPSAFSIVPRRAAKSSRGNGHFQGHLLLPGEQIQPKQEKKGGRSSADFTVLDLEEDDEDDNEKTDDSIDEIVDVVSDYQSEEVDDVEKNNCVEYIEDDEEHVDIETVEELSEEINVAHLKTTAAHTQSFKQPSCTHISADEKAAERSRKAPPIPLKLKPDYWSDKLQKEAEAFAYYRRTHTANERRRRGEMRDLFEKLKITLGLLHSSKVSKSLILTRAFSEIQGLTDQADKLIGQKNLLTRKRNILIRKVSSLSGKTEEVVLKKLEYIYAKQQALEAQKRKKKMGSDEFDISPRISKQQEGSSASSVDLGQMFINNRRGKPLILSRKKDQATENTSPLNTPHTSANLVMTPQGQLLTLKGPLFSGPVVAVSPDLLESDLKPQVAGSAVALPENDDLFMMPRIVNVTSLATEGGLVDMGGSKYPHEVPDSKPSDHLKDTVRNEDNSLEDKGRISSRGNRDGRVTLGPTQVFLANKDSGYPQIVDVSNMQKAQEFLPKKISGDMRGIQYKWKESESRGERVKSKDSSFHKLKMKDLKDSSIEMELRKVTSAIEEAALDSSELLTNMEDEDDTDETLTSLLNEIAFLNQQLNDDSVGLAELPSSMDTEFPGDARRAFISKVPPGSRATFQVEHLGTGLKELPDVQGESDSISPLLLHLEDDDFSENEKQLAEPASEPDVLKIVIDSEIKDSLLSNKKAIDGGKNTSGLPAEPESVSSPPTLHMKTGLENSNSTDTLWRPMPKLAPLGLKVANPSSDADGQSLKVMPCLAPIAAKVGSVGHKMNLTGNDQEGRESKVMPTLAPVVAKLGNSGASPSSAGK", "sequence_length": 3065, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1b6659acb87570718fea3790fc9d5460a7c263d0f601d299c05343246680af9c", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IWI9.json", "taxon_id": "9606", "uniprot_accession": "Q8IWI9", "uniprot_release": "2026_03" } ], "pfam_id": "PF16059", "short_name": "MGA_dom", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16060", "short_name": "DUF4802", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16061", "short_name": "DUF4803", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/adp-ribosylarginine-protein-hydrolase-activity-go0003875.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0003875", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/adp-ribosylarginine-protein-hydrolase-activity-go0003875.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mavl-like-pf16062.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16062", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mavl-like-pf16062.yaml" } ], "pfam_ids": [ "PF16062" ], "protein_name": "ADP-ribosylarginine hydrolase CG2909", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTFGAEVDQVWPAVTGDSPHLTNFGRKLLKDCRQVQKPIGGYENLGNVIKLSAEFPLEFGVNSVKVYRQSPSRLARINEEVASAYPLIHERTLGLYLQYLEHKCRWGNAVEKPIYRNLSLCGFVQRLLVKRCASFFARNDKYLLVSGESGASGFEAVGTREEKAPLVLANVLSYDDIKLSALLSVSSRTEFVNEGERTNCGHVDLNTKTLERHGVIVGMIGARLSRRNLMEFQDIVIARQQNTRERGYGMALDEPATTRDEDYRRLWREFYATRDLIHGQAVIDNQRFGPSKNKMDVFDNLVMKRRYAISFDMLLLEAEARAKRVKKLAYIHVVGFGLGVWKAAEQQERIFMETFEQRMRTLGNRLNNVGLVHFSWFSITHCGGLSNGSLIEIPGHPKDGIRVLISKRNPARKLSDPEHAGMLLVVSYAWDGNALPGNEFWMKMLQSTGDSSTACSTLVAELHNPYINTKFCNGGNLHIASPEHGVLHIAEYAKRVIRSESDAL", "sequence_length": 505, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6d00535c3ebbeff04d3af934c13233820562fce90c7ddf3c72a7af047ff7f6fb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9W2W5.json", "taxon_id": "7227", "uniprot_accession": "Q9W2W5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/adp-ribosylarginine-protein-hydrolase-activity-go0003875.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0003875", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/adp-ribosylarginine-protein-hydrolase-activity-go0003875.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mavl-like-pf16062.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16062", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mavl-like-pf16062.yaml" } ], "pfam_ids": [ "PF16062" ], "protein_name": "ADP-ribosylarginine hydrolase CG3568", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRSFLYMLSQRPKLACLCGKSIIIWPGKRTNLPENAFTQRMLQECGQMAKPDASVDLDNFKAISEQSPAEFGIDSCRVKAQPEDRSDRIREQIASAYPVIHERTLLLFISFLEHKLTFGSEQEKAIYKDMTVVDLVQRLLAKRCVWFFGANDYYRTMQGNIGNEGFEAVGTPAEKEPLTLTSVLSYDEIKLSALLYVSCHSEFINNGSRVNGGEVLQNKDTIEREGVVIGLIGARFERPDVMEYQDIMITKTQNTEANGYGFDLEQISSETVTPASDLRRIWREFYEEPRDFIYADTPYDTTRFEEVSQGIFDHQVMRKRYAISFDTLLLEAQDRAFKAGKPAYIHVVGIGLGVWKAARQQERTFLESFEGRLRALGERLSHIGVVHFSWFHLACVGSLHDGAIIPVDKHPQGGIRIRNSVRNPGDKLTEDMLPVVTYAWDGNALPGNEFWANMLISTGDPAAACSTLISELQNPHINVHYMNGANLHIASVEHGLLHVGDYARRLIV", "sequence_length": 508, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e96e1998af231b58f41730af94d3c8781aa5e01347bc51d11e0d87abf78c384f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9W4J9.json", "taxon_id": "7227", "uniprot_accession": "Q9W4J9", "uniprot_release": "2026_03" } ], "pfam_id": "PF16062", "short_name": "MavL-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16063", "short_name": "DUF4805", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16064", "short_name": "DUF4806", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4807-pf16065.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16065", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4807-pf16065.yaml" } ], "pfam_ids": [ "PF16065" ], "protein_name": "Uncharacterized protein F58A4.6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSIKHSTEIPSTSTQSLVFEFTNLDDLYGFLNILQCREEYSFAQIRAFYNIPVDKKLLVNIQVKNPAQNLDYAWERRLKHHFRYMLDLEKLMWNLSTLGGAYSAMGDFDANYAKVAAKITAHQINLAKKYGDPVILARCYLYTALAEAQLGNLSHAVNIVRAIYHWAKQNPNTDIVQRCCEGVYQKLRAIHIFGKASSNK", "sequence_length": 201, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2923c0473471f950f4ad00b81aedcc9fccb647238f42317220b270a0b0b35c19", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P34473.json", "taxon_id": "6239", "uniprot_accession": "P34473", "uniprot_release": "2026_03" } ], "pfam_id": "PF16065", "short_name": "DUF4807", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4808-pf16066.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16066", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4808-pf16066.yaml" } ], "pfam_ids": [ "PF00041", "PF16066" ], "protein_name": "Fibronectin type III domain-containing protein 5b", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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[] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16069", "short_name": "DUF4811", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16071", "short_name": "DUF4812", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16072", "short_name": "DUF4813", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16075", "short_name": "DUF4815", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16086", "short_name": "DUF4816", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, 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"sequence": "MATGTPDSQARFGQSVKGLLTEKVNTCGTDVIALTKQVLKGSRSSELLGQAARNMVLQEDAILHSEDSLRKMAIITTHLQYQQEAIQKNVEQSSNLQDQLNHLLK", "sequence_length": 105, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3179a0e2630e003b0484e5b0b3f02b0a7c128ab42bc418884d4e50526554e697", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q2KIB7.json", "taxon_id": "9913", "uniprot_accession": "Q2KIB7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/borcs7-pf16088.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16088", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/borcs7-pf16088.yaml" } ], "pfam_ids": [ "PF16088" ], "protein_name": "BLOC-1-related complex subunit 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMATGTPESQARFGQSVKGLLTEKVTTCGTDVIALTKQVLKGSRSSELLGQAARNMVLQEDAILHSEDSLRKMAIITTHLQYQQEAIQKNVEQSSDLQDQLNHLLK", "sequence_length": 106, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "13828881acc7e088e7ee89bcc23e0bec5d691d87abd3bdbbabe21c2c6ca201ec", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96B45.json", "taxon_id": "9606", "uniprot_accession": "Q96B45", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/borcs7-pf16088.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16088", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/borcs7-pf16088.yaml" } ], "pfam_ids": [ "PF16088" ], "protein_name": "BLOC-1-related complex subunit 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATGTPDSQARFGQSVKGLLTEKVNTCGTDVIALTKQVLKGSRSSELLGQAARNMVLQEDAILHSEDSLRKMAIITTHLQYQQEAIQKNVEQSPDLQDQLSHLLK", "sequence_length": 105, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5642979cdf671f7a3129aa3efb208b4fad61157508b64e559702d488f1c06ee2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CRC6.json", "taxon_id": "10090", "uniprot_accession": "Q9CRC6", "uniprot_release": "2026_03" } ], "pfam_id": "PF16088", "short_name": "BORCS7", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-capicua-homolog-like-high-mobility-group-box-ipr058607.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cic-pf16090.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cic-pf16090.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-cic-c-pf25981.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25981", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-cic-c-pf25981.yaml" } ], "pfam_ids": [ "PF00505", "PF16090", "PF25981" ], "protein_name": "Protein capicua homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKPMKKACPGLAGSASGSKSPPATRAKALRRRGAGEGDKPEEEEEAQPQEQAGPEEAEEGEEEEAERDPGAEGTHPELQPNDPTPGLTEDPKGDGEAGRWEPSLSRKTATFKSRAPKKKYVEEHGTGNVGVVGAPEERERTPEDASALGVPPRPPTSTRSSSTDTASEHSADLEDEPPEACGPGPWPSTGTSEGYDLRQLRSQRVLARRGDGLFLPAVVRQVRRSQDLGVQFPGDRALTFYEGVPGGGVDVVLDVTPPPGALMVGTAVCTCVEPGVAAYREGVVVEVATKPAAYKVRLSPGPSSHAGPPGTLPQAQQTLHREPEEAVWVTRSSLRLLRPPWEPGALLRKHPAGPEEEQAEPGPALPPCPSSVEPKQPEDAEVSNISFGSNLGTRCEEGEEKHPPSLGTPVLLPLPPPQLLSPPPKSPAFGGPGRPSEQPSPCQEGSQGGSRSSSVASLEKGAAPAARARTPLTAAQQKYKKGDVVCTPNGIRKKFNGKQWRRLCSRDGCMKESQRRGYCSRHLSMRTKEMEGLADSGPGGTGRPAGVAAREGSTEFDWGDETSRDSEASSVAARGDSRPRLVAPADLSRFEFDECEAAVMLVSLGSSRSGTPSFSPVSTQSPFSPAPSPSPSPLFGFRPANFSPINASPVIQRTAVRSRHLSASTPKAGVLTPPDLGPHPPPPAPRERHSSGILPTFQTNLTFTVPISPGRRKTELLPHPGTLGASGAGGGGAAPDFPKSDSLDSGVDSVSHTPTPSTPAGFRAVSPAVPFSRSRQPSPLLLLPPPAGLTSDPGPSVRRVPAVQRDSPVIVRNPDVPLPSKFPGEVGTAGEARAGGPGRSCRETPVPPGVASGKPGLPPPLPAPVPITVPPAAPTAVAQPMPTLGLASSPFQPVAFHPSPAALLPVLVPSSYPSHPAPKKEVIMGRPGTVWTNVEPRSVAVFPWHSLVPFLAPSQPDPSVQPSEAQQPASHPVASNQSKEPAESAAVAHEQPPGGTGGADPGRPPGAVCPESPGPGPPLTLGGVDPGKSLPPTTEEEAPGPPGEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRRTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPASLGLAGGHKETRERSMSETGTAAAPGVSSELLSVAAQTLLSSDTKVPGSGPCGAERLHAVGAPGSARPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPASYSGPKPSPQYGAPGSFAAPGEGGTLATSGRPPLLPSRASRSQRAASEDMTSDEERMVICEEEGDDDVIADDSFGTTDIDLKCKERVTDSESGDSSGEDPEGNKGFGRKVFSPVIRSSFTHCRPTLDPEPPGPPDPPAAFSKGYGPTPSSSSSPASTSVSVSTSFSLGSGTFKTQESGQGSTAVPLRPPPPGAGGPATPSKATRFPPTDSATFRRKRPESVGSLEAPGPSVIAAPPSGGGNLLQTLVLPPSKEDREGTRVPSAPAPPLAYGAPAAPLCRPAATMVTNVVRPVSSTPVPIASKPFPTSGRAEASSNDIAGARTEMGTGSRVPGGSPMGVSLVYSDKKSAAAATSPAPHLVAGPLLGTVGKAPATVTNLLVGTPGYGAPASPAVQFIAQGAPGSATPAGSGASTGSGPNGPVPLGILQPGALGKAGGITQVQYILPTLPQQLQVAPAPAPAPGTKAAAPSGPAPTTSIRFTLPPGTSTNGKVLAATAPTAGIPILQSVPSAPPPKAQSVSPVQATPSGGSAQLLPGKVLVPLAAPSMSVRGGGAGQPLPLVSSPFSVPVQNGAQQPSKIIQLTPVPVSTPSGLVPPLSPATMPGPTSQPQKVLLPSSTRITYVQSAGGHTLPLGTSSACSQTGTVTSYGPTSSVALGFTSLGPSGPAFVQPLLSGQAPLLAPGQVGVSPVPSPQLPPACTASGGPVITAFYPGSPAPTSAPLGPPSQAPPSLVYTVATSTTPPAATILPKGPPASATATPAPTSPFPSATGSMTYSLVAPKAQRPSPKAPQKVKAAIASIPVGSFESGTTGRPGSTPRQSSDSGVAREPAAPESELEGQPTPPAPPPPTETWPPTARSSPPPPLPAEERPGTKGPETASKFPSSSSDWRVPGLGLESRGEPPTPPSPAPATGPSGSSSGSSEGSSGRAAGDTPERKEVTSSGKKMKVRPPPLKKTFDSVDKVLSEVDFEERFAELPEFRPEEVLPSPTLQSLATSPRAILGSYRKKRKNSTDLDSAPEDPTSPKRKMRRRSSCSSEPNTPKSAKCEGDIFTFDRTGTETEDVLGELEYEKVPYSSLRRTLDQRRALVMQLFQDHGFFPSAQATAAFQARYADIFPSKVCLQLKIREVRQKIMQAATPTEQPPGAEAPLPGPPPTGMAATPVPTPSPAGGPDPTSPGSDSGTAQVAPPLPPPPEPGPGQPGWEGAPQPSPPPSGPSTAATGR", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-capicua-homolog-like-high-mobility-group-box-ipr058607.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cic-pf16090.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cic-pf16090.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-cic-c-pf25981.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25981", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-cic-c-pf25981.yaml" } ], "pfam_ids": [ "PF00505", "PF16090", "PF25981" ], "protein_name": "Protein capicua homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKPMKKACTGLSGPGSGSKSPPATRAKALRRRGAGEGDKPEEEDDEAQQPQPQSGPEEAEEGEEEEAERGPGAEGPPLELHPGDPAPGPAEDPKGDGEAGRWEPSLSRKTATFKSRAPKKKYVEEHGAGSSGVAGAPEERVRTPEEASGLGVPPRPPTSTRSSSTDTASEHSADLEDEPAEACGPGPWPPGSTSGSYDLRQLRSQRVLARRGDGLFLPAVVRQVRRSQDLGVQFPGDRALTFYEGVPGAGVDVVLDATPPPGALVVGTAVCTCVEPGVAAYREGVVVEVATKPAAYKVRLSPGPSSQPGLPGSLPQPPQPLHREPEEAVWVARSSLRLLRPPWEPETMLRKPPTGPEEEQAEPGATLPPCPAALDPKQPEDAEVSKISFGGNLGTHCEEGEEKHPPALGTPALLPLPPPQLLSPPPKSPAFVGPGRPGEQPSPCQEGSQGGSRSSSVASLEKGTAPAARARTPLTAAQQKYKKGDVVCTPSGIRKKFNGKQWRRLCSRDGCMKESQRRGYCSRHLSMRTKEMEGLADSGPGGAGRPAAVAAREGSTEFDWGDETSRDSEASSVAARGDSRPRLVAPADLSRFEFDECEAAVMLVSLGSSRSGTPSFSPVSTQSPFSPAPSPSPSPLFGFRPANFSPINASPVIQRTAVRSRHLSASTPKAGVLTPPDLGPHPPPPAPRERHSSGILPTFQTNLTFTVPISPGRRKTELLPHPGALGAPGAGGGGAAPDFPKSDSLDSGVDSVSHTPTPSTPAGFRAVSPAVPFSRSRQPSPLLLLPPPAGLTSDPGPSVRRVPAVQRDSPVIVRNPDVPLPSKFPGEVGTAGEVRAGGPGRGCRETPVPPGVASGKPGLPPPLPAPVPITVPPAAPTAVAQPMPAFGLASSPFQPVAFHPSPAALLPVLVPSSYTSHPAPKKEVIMGRPGTVWTNVEPRSVAVFPWHSLVPFLAPSQPDPSVQPSEAQQPASHPVASNQSKEPAESAAVAHERPPGGTGSADPERPPGATCPESPGPGPPHPLGVVESGKGPPPTTEEEASGPPGEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRRTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSMSETGTAAAPGVSSELLSVAAQTLLSSDTKAPGSSSCGAERLHTVGGPGSARPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPASYSGPKPSTQYGAPGPFAAPGEGGALAATGRPPLLPTRASRSQRAASEDMTSDEERMVICEEEGDDDVIADDGFGTTDIDLKCKERVTDSESGDSSGEDPEGNKGFGRKVFSPVIRSSFTHCRPPLDPEPPGPPDPPVAFGKGYGSAPSSSASSPASSSASAATSFSLGSGTFKAQESGQGSTAGPLRPPPPGAGGPATPSKATRFLPMDPATFRRKRPESVGGLEPPGPSVIAAPPSGGGNILQTLVLPPNKEEQEGGGARVPSAPAPSLAYGAPAAPLSRPAATMVTNVVRPVSSTPVPIASKPFPTSGRAEASPNDTAGARTEMGTGSRVPGGSPLGVSLVYSDKKSAAATSPAPHLVAGPLLGTVGKAPATVTNLLVGTPGYGAPAPPAVQFIAQGAPGGGTTAGSGAGAGSGPNGPVPLGILQPGALGKAGGITQVQYILPTLPQQLQVAPAPAPAPGTKAAAPSGPAPTTSIRFTLPPGTSTNGKVLAATAPTPGIPILQSVPSAPPPKAQSVSPVQAPPPGGSAQLLPGKVLVPLAAPSMSVRGGGAGQPLPLVSPPFSVPVQNGAQPPSKIIQLTPVPVSTPSGLVPPLSPATLPGPTSQPQKVLLPSSTRITYVQSAGGHALPLGTSPASSQAGTVTSYGPTSSVALGFTSLGPSGPAFVQPLLSAGQAPLLAPGQVGVSPVPSPQLPPACAAPGGPVITAFYSGSPAPTSSAPLAQPSQAPPSLVYTVATSTTPPAATILPKGPPAPATATPAPTSPFPSATAGSMTYSLVAPKAQRPSPKAPQKVKAAIASIPVGSFEAGASGRPGPAPRQPLEPGPVREPTAPESELEGQPTPPAPPPLPETWTPTARSSPPLPPPAEERTSAKGPETMASKFPSSSSDWRVPGQGLENRGEPPTPPSPAPAPAVAPGGSSESSSGRAAGDTPERKEAAGTGKKVKVRPPPLKKTFDSVDNRVLSEVDFEERFAELPEFRPEEVLPSPTLQSLATSPRAILGSYRKKRKNSTDLDSAPEDPTSPKRKMRRRSSCSSEPNTPKSAKCEGDIFTFDRTGTEAEDVLGELEYDKVPYSSLRRTLDQRRALVMQLFQDHGFFPSAQATAAFQARYADIFPSKVCLQLKIREVRQKIMQAATPTEQPPGAEAPLPVPPPTGTAAAPAPTPSPAGGPDPTSPSSDSGTAQAAPPLPPPPESGPGQPGWEGAPQPSPPPPGPSTAATGR", "sequence_length": 2517, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5d0b1fd2a24f65b3619c7e866e695b2d0fcdcd7a748bbdb7d5e8889804311ae5", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q96RK0.json", "taxon_id": "9606", "uniprot_accession": "Q96RK0", "uniprot_release": "2026_03" } ], "pfam_id": "PF16090", "short_name": "Cic", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16091", "short_name": "DUF4820", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Tetrahymena thermophila (strain SB210)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cfap61-dimer-pf23150.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cfap61-dimer-pf23150.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cfap61-n-pf16092.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16092", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cfap61-n-pf16092.yaml" } ], "pfam_ids": [ "PF16092", "PF23150" ], "protein_name": "Cilia- and flagella-associated protein 61", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYSNNQLDNPNHSRSQYRNGDQSGIYAGSDEEFQVLVRKSDLDDVDEVLKIIAQHEREANDLLYDYPNLLSLFEKNYLSVTILNQQQQIIGAAVFNDFPQGLTGQIDFQHENFWENWIFDAFNFDESICITPFNTLWMTFFFVAKDQYKFSQEEELIICQKVFQNVYATLPQLEGILFLKRGETMEDNGAQAQISSILENIFIEVPVKDRDIIKRVRGIHLNSEVFYSPKHACQEIIEIRMAREQDHDDLAEIFNRQSEVLTAQFGEFFIADLIATQNLTRRGTRKFLNNGKAIVGQVRDKAVGLMSISTDIDYKFLAQCFELETYDNLFKPDFMEAIQNKRDDIRRENQYREEDQYQEIVKKMNEERMKSHFIGQRMTLQQHCREKEQEIVMKIDEIINNDAIQKNLTKKQVEEFLDEWLRGYELHQPSDLFYQYPHIFPNTQSIILTPRQLLIETLEFFGLPQHYMNGAGHWKDWVQKKMEEKRIAQLKRPQKKVTKRPKRQKEEDKKEDEFKPPSYFDLTPFQSAFKKFLAVNPEGRTIFRQKIEASMKVIKMMFCNENGEMKEERHVDLNDLGNELNKQKMDIAPEVCENLASFLECFGEIKYEEEIIMVNPPKEDTNQNAKIAQTKKMFASEQTESKPIPKLLKKTSFQEFFDAVYKMKEFDIMMNRLDITKSTTLKAEVSQIVKEEAQQEKAKQEKRRIERSPNPYDDYVKNLKDLDSIPEVPIDAQNAIVINLFCIDENFESRSLDFVEYAFSIFGDRDYIILTQPFTVPETTLLQQFIKIPMKKNSTFDHVLYIYHKDCLLSNTLFIRKSKLEDMQYVAPLFSNLINKQQIYDDTLEAITQTASRKVAFSVFCDQSLIGIYVVSKNVNLDYYISHFCVQDHIILKEHPMTCHTKLIHTALNPLFTKNTRFILKEILRLMNKTCMYFEVQEKTLLPDVFNELVFVRARQFPHFLKRKWDFEHDKEHFERAGDLTEVQDGKRDAFDQEQAPFSLSVITKKMMSSVKVNNNTRIVVVGASDTGISFIESLLSVKDINFTHITLLAPGGIMTMHINLPGDQLKALSTNYTLEELKNLMLDARVNVLDAKMVELDKKGKKIKLDKNAELPYDYLVNTVGLIDTELQNRRLISTGLFSSPYYQQLLDKYGRDRAQIEEGAPPIFGQHPVYGNYVQGVYSIDDPYLYEEFKKTGKKDSNIDLLTRKKRPQSITIYGRTLHTIAFISGMVNRGVHPNRIHYVIPPKVFETQVQFKNNTERLIYEDKRINDPDPFDDPSVEQKIFEFMESKGIQVHKGYNLHQIDVDEETRICQGVVFRKKADNYEEIIQQIEIKKQQILERDANSENADKGFDDTQSRDGDEENQPITLEQEIEELERNKFDDIEITSRFLVTSGLVDIDKEIFYIIHENGLVYNGRLIVKSNFQTTEKDIFCCGKICEFSQRYKRLSIGRSLRLDKYNGRELGQKLAKCLLDSLDLGYLTDQIYSLGELPNLYMPIGIGAFLPGDLFYYHIKKNDYARPSKTMEAEDNRQDIVSDNIDQKQQIGHYIKFKFDNNGIIDQVTYLGTEPVSVQSLVSFVGLSEKCLNQLDVRFKNGLIPNISEFLSENWAIGLYHEWFSEFRHITKMEMLQSENIQQILDEAAKYAQGGGFLDPEFIEKIKAKISPEIISQIQQGTLDFIRENQNHLPMYYVPPKKVNVD", "sequence_length": 1699, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1210405531c9eea5e99bfba3c4c30ddb05e87296519da7340fe39d775ff270b8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q23F13.json", "taxon_id": "312017", "uniprot_accession": "Q23F13", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/radial-spoke-stalk-go0001536.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0001536", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/radial-spoke-stalk-go0001536.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cfap61-dimerisation-domain-ipr056299.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056299", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cfap61-dimerisation-domain-ipr056299.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cilia-and-flagella-associated-protein-61-n-terminal-domain-ipr032151.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cilia-and-flagella-associated-protein-61-n-terminal-domain-ipr032151.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cfap61-dimer-pf23150.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cfap61-dimer-pf23150.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cfap61-n-pf16092.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16092", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cfap61-n-pf16092.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8CEL2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF16092", "PF23150" ], "protein_name": "Cilia- and flagella-associated protein 61", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4cbc874fafbaa4a4cbedecfe148093b9e249eef29ff8303e5379a0e531ba7aed", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSILTSPRGKVEVVHCRRTESQDIFCIKNLVRKFTQKLFGRLNIIYLLEKANLAVTVCNDKEEIMAHSIFLDYPNWNVAKQDNWIPLFRELDKEIPCTPLNTLFMHFFVAVDEYATGCLKEIIRTVFKAVPELYFIFLIVPTYLSLGSTLITVFDQVGNIPCLNYNEDFAVHICHRHNHYPQLHIRKARVEDHDDLMPIFMHYDNTLKEIYGEYFLAELIEAQDKDHHAVVCEVEGKAVGFMSVCTSVNLPLLHECFDLGPFHGFCTPHPDDILKPSREPSLEEGEEKHLKKCSTSLIIREMQIKTTLRFHLTPVRMAKIKNSETETSASCEEALPTVLGLVSEERLKQDMEKNLSILSLVDEEDVASSLSSSLLLSVESSHFRPLYLGDPIAFCIQLFCIDERYEARQVLISNVSLSLDFMSFVFSLFPGKNFCLISVPHLTPEFVLIQNFVKVVPFNNCTLDHDLYVFHRAGLLRSITIRLAKFLDTAGVEKLVSTLLLSTKILDDLAQYNEAGRDPDGTALQVFVAEVADQIVGIAVIRKEMDIEYIRSHYNIEDFIYFSHHQQEEHGRLNHFALNPIFRHYTKFFLKEILRLGYKSCLYYPVYPQTREGKLQSSYSHSLTSALHYLVPVRPRRQIVYPLEKLGINAPSKEVSKDQVSFALNHTNRKLTLEPKVTVNARIVVVGASSVGISFLETLVFCSHLKFNNLTLISTHGLPGKRLLHNEQRKFLASDHCFNDKDYALMSLCSWVNVVVGRMTAIDRAAKQVVVSKSEIVFYDHLILCTGLQYQVPCPTGADTEQHLTNREVLELSKQRYTGTVPSNLFILNDEEDCVRMLCWLRNSSILTEGKVIVYGNTLDAYTTVETLLNIGMKGSGIYFVHPPTESNITCINNNDVESAVEDALSAAGVTVFHDALLAQWNHGQHPDPIYNACFTTSTKPIRLECSAFFSFYKKNVDYETFKAFNDACLVYDGRLVIDTTFHTNDIAIRAAGSLTKFSNRYYSNEWTHSNFSSKEIGFQLAAAMLSLFDPTLEPVTEPPADLDRLIPMYKGAKIQGGILPGSYHYLHISKPAIPTPLNLQRSQPDFGSDVVTGNAKKGTYFRLYINNYKLVEAITCFSKEPFPSSNYIRLFGQHEQVLNNLCTRFDDKLIPDLYSYFTEPWCMALFHDRFIDLKKELRQILISKQEEDKPTMEEIAYRLEEEEINLNEKPQKYLQRVFEDSIYKSLLEKSILDYLHYNQYHLPMYAWPGII", "sequence_length": 1252, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4cbc874fafbaa4a4cbedecfe148093b9e249eef29ff8303e5379a0e531ba7aed", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CEL2.json", "taxon_id": "10090", "uniprot_accession": "Q8CEL2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cfap61-dimerisation-domain-ipr056299.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056299", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cfap61-dimerisation-domain-ipr056299.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cilia-and-flagella-associated-protein-61-n-terminal-domain-ipr032151.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cilia-and-flagella-associated-protein-61-n-terminal-domain-ipr032151.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cfap61-dimer-pf23150.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cfap61-dimer-pf23150.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cfap61-n-pf16092.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16092", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cfap61-n-pf16092.yaml" } ], "pfam_ids": [ "PF16092", "PF23150" ], "protein_name": "Cilia- and flagella-associated protein 61", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVLTSPRGKVEVVHCRRTESQDVYCIKSLIRKFTCKLFGKLNIIYLLEKANLAVTLCNDKEEIMAQATFLDYPNWNVAKQDDWVSVFRELDSDIPCTPLNTLFMHLFVAVDEYSVGCCKEILRTVYKAVPELHFIFLIVPSYMSLGSTLITVFDQVGNIPCLTYEEDFAVHICHRHSHYPQLHVRKARVEDHDDLMPIFMRYDTILKETYGEYFLAELIEAQDEENHAVVCEVEGTAVGFMSVCSRVNMQLLHECFDLGPFHGLCFPHPDDVLESPQDLSVRRSQDAELRSSSQGSQKIVEELQEPVSPDTMENIQGNIAREAASEEALTAVQSGNVSEPEDIEKLSDISTGYAQYHHVSSRSLASLVLPEEPVHFRPIYRGASAAFCIQLFCIDEKYEARSLDFMNFVFSLFSDKNFCVISLPHLTPEFFLIQNFVKMVPFNTCTLEQDLYVFHRAGLLKSINIRFATLLDTPGVENLVSTLMLNKSILEDLDRYNKARKDPDGTLLQAFVAEVAEQIVGIAVIRNEMDIEYIRSHYNIEDFIYFSHHQREEHGHMHHFALNPIFRHYTKFFLKEILRLGFKSCLYYRVYPKSREGKFQNPYAHSLTSALHYLVPVRPRRQIVYPLEKLGINAPSKAVSKDPMSYALNHTNRKLTLEPKITVNAKIIVVGASSVGISFLETLVFCSHMKFNNLTLISTHGLPGKKLLDTEQRKFLASDHCFNDKDYALMSLCSWVNVVVGRMTGIDRAAKHVVLSTDEIVPYDHLILCTGQQYQVPCPTEADISQHLTNREVPNSSQRRYTGKVPCNHFTLNEEEDCFKALIWIRNNSITTEGNIIVYGNTIDTYTTVETLLNLGVSGSRIHLVQPPPASTITCINNYSVESAVADALGAAGVTMYRDAILAQWNDGLHPDPIYSASFTTPTKPFRLQCSMFFSFCEKNVDYETFKALNDACLVYDSRLVIDTNFHTNDIAIRAAGSLTKFSNRYYSNEWTHSNFSSKEIGFQLAAAMLHLFDPTLEPVTEPPANLDRLIPMYKGAKIQGGILPGSYHYLHIAKPAIPTPLEVQMAQPNYGLELVTGSAKNGTYFRIHINKYKMVETITCLSREPFPASNYIRLFGQHEQLLNNLCARYDENLITDLYSYFTEPWCLALFHDRFIDLRKELRQILASKEEEDLPSIEQLAHQIEDEEINPTEKPRQYLKRVFEESIYKTLVERSTLDYLHYNRYHLPMYAWPGIV", "sequence_length": 1237, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f4ab67e9b96d4098704a753f57de2487d38ebd929e7f547bf85b287871115c93", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NHU2.json", "taxon_id": "9606", "uniprot_accession": "Q8NHU2", "uniprot_release": "2026_03" } ], "pfam_id": "PF16092", "short_name": "CFAP61_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16103", "short_name": "DUF4822", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16105", "short_name": "DUF4823", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16106", "short_name": "DUF4824", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16107", "short_name": "DUF4825", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16108", "short_name": "DUF4826", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4827-pf16109.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16109", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4827-pf16109.yaml" } ], "pfam_ids": [ "PF16109" ], "protein_name": "Outer membrane protein assembly factor BamK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRIIMILLPVLAIGMAVLTLGSCKKSDIKSLKEMKKDERKAIESFINRMGFTIKEGHEGQSEFDPDIMYHFDNDLYMQVLDKGKEPPVLNKTKINVRMEGFMFNRERDSIYVFNSLTSGGFQESVFRYIYKYNDGDIHFELIKCTTGSNLDMFVCEGVAFPMTMLGNKARVRLIVPFRIGPESLYSRGLTGYYKEVEYVFRD", "sequence_length": 203, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "98fd8cef8ebcfaabbf6463a8c67b28af43041297988837f978952386f55a60a7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B2RK12.json", "taxon_id": "431947", "uniprot_accession": "B2RK12", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4827-pf16109.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16109", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4827-pf16109.yaml" } ], "pfam_ids": [ "PF16109" ], "protein_name": "Outer membrane protein assembly factor BamK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKLVFLFLSLLAAGGIFQACDDSKTYAEMLEDEKNAVNKFIKDKGIRIISQDEFEKNDTVTNLERNEYVALSDGVYMQIVDRGSAENKTDTFANNNEICVRYIEEDIMTRDTTCFNVFLEEWGDANQLYTNPAVFRYVAEGSYVYGTFIQMDYYWASYYQSTAVPAGWLLALPFVRNYAHVRLIVPSKVGHSSAQQYVNPYYYDIWTFSKALN", "sequence_length": 214, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5211cf8fd2b7f2bf1724d63d126d49df1d3ac73f3732bf9aaf05aa35b495a506", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8A0S2.json", "taxon_id": "226186", "uniprot_accession": "Q8A0S2", "uniprot_release": "2026_03" } ], "pfam_id": "PF16109", "short_name": "DUF4827", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16110", "short_name": "DUF4828", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16111", "short_name": "DUF4829", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16112", "short_name": "DUF4830", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16115", "short_name": "DUF4831", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16116", "short_name": "DUF4832", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16117", "short_name": "DUF4833", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16118", "short_name": "DUF4834", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16119", "short_name": "DUF4835", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16120", "short_name": "DUF4836", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16125", "short_name": "DUF4837", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16126", "short_name": "DUF4838", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16127", "short_name": "DUF4839", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16128", "short_name": "DUF4840", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16129", "short_name": "DUF4841", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16130", "short_name": "DUF4842", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16132", "short_name": "DUF4843", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16133", "short_name": "DUF4844", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16137", "short_name": "DUF4845", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16138", "short_name": "DUF4846", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16139", "short_name": "DUF4847", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16140", "short_name": "DUF4848", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16141", "short_name": "GH18_BT1044-like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pasteurella multocida (strain Pm70)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4850-pf16142.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16142", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4850-pf16142.yaml" } ], "pfam_ids": [ "PF16142" ], "protein_name": "Uncharacterized protein PM0291", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRISLFITAIFSLSYSVIAFADKYEFSFAPNIEQDPVMMEAIFLEKRILNKQEISVYQTKYENNIEGSWIKTPVTPFSTKLNAEILEQFDLYAVPFEKMILVPKNWQLLNGGVGVNGSISYVFTPKTGKGYLSYYHAGACVGCAMISASAFFPEAQKDAKEHDFEAYTATVPPLSQVRLKPHLMAYQVNKGKDKLDGVAYYNLENDGPFWKAEVFLPESQQKLATPLLNQFIREGKQ", "sequence_length": 238, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ee2dff9e6d9a73d9f1bca4409543616c90ef76fc31281f7c6e31ddfda87d8385", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CNY0.json", "taxon_id": "272843", "uniprot_accession": "Q9CNY0", "uniprot_release": "2026_03" } ], "pfam_id": "PF16142", "short_name": "DUF4850", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16143", "short_name": "DUF4851", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16144", "short_name": "DUF4852", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16145", "short_name": "DUF4853", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16146", "short_name": "DUF4854", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16147", "short_name": "DUF4855", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16148", "short_name": "DUF4856", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16149", "short_name": "DUF4857", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16150", "short_name": "DUF4858", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16151", "short_name": "DUF4859", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16152", "short_name": "DUF4860", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4861-pf16153.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16153", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4861-pf16153.yaml" } ], "pfam_ids": [ "PF16153" ], "protein_name": "Uncharacterized protein P7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKHVIMLYFIAAATLFSSCAKQDSEHRLITVKNSLDLPRAFETIEISKSDIQLHTGERFEDFSIQDVATKAILTSQFVDEDQDGTADVLLFQPELNPNSEKQFELVKVDGGVEVDSTVYCYSRFVPERTDDYTWENNKVAFRTYGPVAQKMVEDSLPGGTLSSGIDAWLKKVEYSIIDNWYAKNDKDPGYYHIDHGEGLDNFHVGSSRGVGGSAVKVDTSYYISKNFTDYKTITTGPIRTSFILKYADWDANEKTISEEKHISLDYGNNFSRFEIHVDGTDELSVGLTLHDNKGEITQNVDQGWIAYWESEYFDSELGTAIVAPKGVMTASEYYVTSMKDRSNLYAQLNVDNNKVVYYAGFAWKESKQYPTKASWEKYIQEFSEKLNTPLEVSIQ", "sequence_length": 395, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9a976369c2a9f4931c65188086b5246ffb69cf1a3cfe140b543d095c85fce6b9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/T2KN67.json", "taxon_id": "1347342", "uniprot_accession": "T2KN67", "uniprot_release": "2026_03" } ], "pfam_id": "PF16153", "short_name": "DUF4861", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Klebsiella pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4862-pf16154.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16154", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4862-pf16154.yaml" } ], "pfam_ids": [ "PF16154" ], "protein_name": "Uncharacterized protein YiaX1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNNTGYIIGAYPCAPSFHQKSEDEEKAFWRQLADTPDIRGLEQPCLEHLHPLGDEWLMRHTPADWQIVVTAIMETMRRRGGNGGFGLASSDEEQRKACVAYYRHLYQKINAINAANAGKIVALELHAAPCASNPNVAQATDAFARSLKEVASWDWSCSLVLEHCDAMTGPAPRKGFLPLENVLETLAGYEISVAINWARSAIEGQDTTLPLTHTRQASQAGKLGALMFSGTTLNGEYGEWQDLHAPFSPFCAQSLMTHTHVRELLACAGSDALQFLGFKLLEINPDADVNHRIAILRDGIAALNKAQQ", "sequence_length": 309, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e1ed1e4118bcba0ffe58eaedb688dcb6aba7da538acdadf567735c55637b3d63", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1XPK1.json", "taxon_id": "573", "uniprot_accession": "A1XPK1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4862-pf16154.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16154", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4862-pf16154.yaml" } ], "pfam_ids": [ "PF16154" ], "protein_name": "Uncharacterized protein STM3670", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNNTGYIIGAYPCAPSFHQKSEEEETEFWRQLSDTPDIRGLEQPCLEHLHPLGDEWLLRHTPGNWQIVVTAIMETMRRRSENGGFGLASSDEEQRKACVEYYRHLYQKINKINGNNTGKVIALELHAAPLAGNPNVAQATDAFARSLKEIANWDWSCDLVLEHCDAMTGPAPRKGFLPLVNVLETIADYDISVCINWARSAIEGRDTSLPLIHTQQAKQAGKLGALMFSGTTLDGEYGEWQDLHAPFAPFCPQSLMTEKHVKELITAAAPELLQFTGIKLLEINASADINHRINILRDGINMMKKATRR", "sequence_length": 310, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1258d598b339c1fff743d7889cb16cc2843aecd00d30a0fd5b8872120d5981ee", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8ZL81.json", "taxon_id": "99287", "uniprot_accession": "Q8ZL81", "uniprot_release": "2026_03" } ], "pfam_id": "PF16154", "short_name": "DUF4862", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16155", "short_name": "PnbB", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16156", "short_name": "DUF4864", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16157", "short_name": "DUF4865", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16160", "short_name": "DUF4866", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16161", "short_name": "DUF4867", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O55:H7 (strain RM12579 / EPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/kwab-pf16162.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16162", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/kwab-pf16162.yaml" } ], "pfam_ids": [ "PF16162" ], "protein_name": "Kiwa protein KwaB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTQQLKEKISKIIDNFSGIRVVFTTTANELKLSRIEGSALNSIAEGFIDKIKEDIINNEDLTSPLLSNFDDRKNALFKFDYEQYPEEFNKITQAIAIPPNSQDYYNPLNKFTDVKGIIILISGDNKCLALYKNKTNLAVLRNSRKMFNLVPDPDGYLKQLPNEILRLDFNYDLFSIGEDFYIKNHKTLETQMKFHQVIEAQAVIALNSLRDSLLIEDISGLEKSSREISFARKLAKISKHSPVLGKIDTKTIIDYVSQHKYLSAILQINEAGDKLLIKTKTSQKHFIKLMSDDYLQSDLTKIIYMSIAKDRLDE", "sequence_length": 315, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5331976bf9b3acda80c158a8aba3cf4b9494a62970e3d208fbce48c107eb369c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DW46.json", "taxon_id": "1048689", "uniprot_accession": "P0DW46", "uniprot_release": "2026_03" } ], "pfam_id": "PF16162", "short_name": "KwaB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16163", "short_name": "DUF4869", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16167", "short_name": "DUF4871", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16169", "short_name": "DUF4872", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4873-pf16170.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16170", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4873-pf16170.yaml" } ], "pfam_ids": [ "PF16170" ], "protein_name": "Uncharacterized protein Mb0968c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGVSEAERRGHRKLVRFQARRAIGPIRPTSAAWDRDFDPAGKRIAVVGTDAAAAHYISRLSESAASVTVFTQAPRRVVTGVPLWTTRAKRWLRRRTGAEHPAVAWATAAIDALTSSGIRTSDGVEHPVDAIIYGTGFAIADQVGDQTLVGAGGVTIRQAWDDGMEPYLGVAVHGFPNYFFITGPDTAAQARCVVECMKLMERTASRRIEVRRSSQQVFNERAQLKPAQPHRQTGGLEAFDLSSAATEDDQTYDGAATLTLAGARFRVRVRLTGHLDPIDGNYHWQGTVFDSLPETSLTHARAATLTIGGRSAPARITEQTPWGTHSVAGVGPPPYARSGPASATT", "sequence_length": 346, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f6a2438e3c92d00e2f27c4c6709007168a0e7c6098b36b14167ba12cdd7faf8d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64766.json", "taxon_id": "233413", "uniprot_accession": "P64766", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4873-pf16170.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16170", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4873-pf16170.yaml" } ], "pfam_ids": [ "PF16170" ], "protein_name": "Uncharacterized protein MT0969", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGVSEAERRGHRKLVRFQARRAIGPIRPTSAAWDRDFDPAGKRIAVVGTDAAAAHYISRLSESAASVTVFTQAPRRVVTGVPLWTTRAKRWLRRRTGAEHPAVAWATAAIDALTSSGIRTSDGVEHPVDAIIYGTGFAIADQVGDQTLVGAGGVTIRQAWDDGMEPYLGVAVHGFPNYFFITGPDTAAQARCVVECMKLMERTASRRIEVRRSSQQVFNERAQLKPAQPHRQTGGLEAFDLSSAATEDDQTYDGAATLTLAGARFRVRVRLTGHLDPIDGNYHWQGTVFDSLPETSLTHARAATLTIGGRSAPARITEQTPWGTHSVAGVGPPPYARSGPASATT", "sequence_length": 346, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f6a2438e3c92d00e2f27c4c6709007168a0e7c6098b36b14167ba12cdd7faf8d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKN6.json", "taxon_id": "83331", "uniprot_accession": "P9WKN6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4873-pf16170.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16170", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4873-pf16170.yaml" } ], "pfam_ids": [ "PF16170" ], "protein_name": "Uncharacterized protein Rv0943c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGVSEAERRGHRKLVRFQARRAIGPIRPTSAAWDRDFDPAGKRIAVVGTDAAAAHYISRLSESAASVTVFTQAPRRVVTGVPLWTTRAKRWLRRRTGAEHPAVAWATAAIDALTSSGIRTSDGVEHPVDAIIYGTGFAIADQVGDQTLVGAGGVTIRQAWDDGMEPYLGVAVHGFPNYFFITGPDTAAQARCVVECMKLMERTASRRIEVRRSSQQVFNERAQLKPAQPHRQTGGLEAFDLSSAATEDDQTYDGAATLTLAGARFRVRVRLTGHLDPIDGNYHWQGTVFDSLPETSLTHARAATLTIGGRSAPARITEQTPWGTHSVAGVGPPPYARSGPASATT", "sequence_length": 346, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f6a2438e3c92d00e2f27c4c6709007168a0e7c6098b36b14167ba12cdd7faf8d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKN7.json", "taxon_id": "83332", "uniprot_accession": "P9WKN7", "uniprot_release": "2026_03" } ], "pfam_id": "PF16170", "short_name": "DUF4873", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16173", "short_name": "DUF4874", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16175", "short_name": "DUF4875", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16215", "short_name": "DUF4876", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16216", "short_name": "GxGYxYP_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4879-pf16219.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16219", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4879-pf16219.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-60-40-2870-2-60-40-2870.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.60.40.2870", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-60-40-2870-2-60-40-2870.yaml" } ], "pfam_ids": [ "PF16219" ], "protein_name": "SPbeta prophage-derived uncharacterized protein YolA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKRITYSLLALLAVVAFAFTDSSKAKAAEALPLYYLQITGITSDGNDFAWDNLTSSQTKAPNVLKGNKLYVKARFMGYTKLTVITGKDGKNLLYNGTAKMFKSDAILGQNKVVIGWDKYFEIPMDALQDNSIQIKALSSGTTFVYSQKIDFERE", "sequence_length": 155, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "de611f7949d8652e0a1f8910e4fa8016ae665fd7548a07ebb5949619743e79fd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31994.json", "taxon_id": "224308", "uniprot_accession": "O31994", "uniprot_release": "2026_03" } ], "pfam_id": "PF16219", "short_name": "DUF4879", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/sigma-factor-antagonist-activity-go0016989.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016989", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/sigma-factor-antagonist-activity-go0016989.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/ferric-citrate-uptake-sigma-factor-regulator-fecr-nf007296.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007296", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/ferric-citrate-uptake-sigma-factor-regulator-fecr-nf007296.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fecr-n-terminal-ipr032623.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032623", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fecr-n-terminal-ipr032623.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fecr-protein-ipr006860.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006860", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fecr-protein-ipr006860.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4880-pf16220.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16220", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4880-pf16220.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fecr-pf04773.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04773", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fecr-pf04773.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-60-120-1440-2-60-120-1440.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.60.120.1440", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-60-120-1440-2-60-120-1440.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/3-55-50-30-3-55-50-30.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.55.50.30", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/3-55-50-30-3-55-50-30.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P23485", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04773", "PF16220" ], "protein_name": "Ferric citrate uptake sigma factor regulator FecR", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "1733dc838a25c0d139be49a07cc04b32372178303465dc33ecffb21fb320ee43", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNPLLTDSRRQALRSASHWYAVLSGERVSPQQEARWQQWYEQDQDNQWAWQQVENLRNQLGGVPGDVASRALHDTRLTRRHVMKGLLLLLGAGGGWQLWQSETGEGLRADYRTAKGTVSRQQLEDGSLLTLNTQSAADVRFDAHQRTVRLWYGEIAITTAKDALQRPFRVLTRQGQLTALGTEFTVRQQDNFTQLDVQQHAVEVLLASAPAQKRIVNAGESLQFSASEFGAVKPLDDESTSWTKDILSFSDKPLGEVIATLTRYRNGVLRCDPAVAGLRLSGTFPLKNTDAILNVIAQTLPVKIQSITRYWINISPL", "sequence_length": 317, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "1733dc838a25c0d139be49a07cc04b32372178303465dc33ecffb21fb320ee43", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P23485.json", "taxon_id": "83333", "uniprot_accession": "P23485", "uniprot_release": "2026_03" } ], "pfam_id": "PF16220", "short_name": "DUF4880", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16222", "short_name": "DUF4881", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16223", "short_name": "DUF4882", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16224", "short_name": "DUF4883", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16225", "short_name": "DUF4884", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4885-pf16226.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16226", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4885-pf16226.yaml" } ], "pfam_ids": [ "PF16226" ], "protein_name": "Uncharacterized protein YbdO", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRLNRQFIRTQLIAQNILSKNAPAKRENATENPAAVLEKAYSRLKSQSSTGGINQFNYSKTSVSGNSGTFSKVYQSANDRTVTDTGEETVIQSQNPYESESDIRIKILDEKYSRMNAINKTKSDPLGYIKDKYQNSKSPYFRSDLSAAERQAAYDNETEWLFKGKAQNYNLQDAVFRNVTFHGEVEAENEKVYQRGQVNQQLQVLLNRNHIHIPEGTELTFTITPIDYQVRVSGTDDQDLIKQIEQVLQSGDNSKELFLHIMKSQSSDSAQFSEEAYKKYQAAREMYEVTGYHLKDLEVIDGRYVTPEGRDLMDVYKEELEKDPVQKQTASYAISYYRSELSKIAEAGYNAIPDFILSIDYSNGSLRDVGQSKSYGTGDTGWLEALKRQTGVNY", "sequence_length": 394, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6ac096eeb7ea1afe4a0cf16b02aac84a1f5b02c575df1452e0f756480f665202", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31437.json", "taxon_id": "224308", "uniprot_accession": "O31437", "uniprot_release": "2026_03" } ], "pfam_id": "PF16226", "short_name": "DUF4885", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16227", "short_name": "DUF4886", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16228", "short_name": "DUF4887", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16229", "short_name": "DUF4888", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16230", "short_name": "DUF4889", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16231", "short_name": "DUF4890", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16232", "short_name": "DUF4891", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16233", "short_name": "DUF4893", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4892-pf16234.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16234", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4892-pf16234.yaml" } ], "pfam_ids": [ "PF16234" ], "protein_name": "Uncharacterized protein PA1624", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRGFLLLSLGVFSFSALAADLPGSHDLDILPRFPRAEIVDFRQAPSEERIYPLGAISRISGRLRMEGEVRAEGELTALTYRLPPEHSSQEAFAAARTALLKADATPLFWCERRDCGSSSLLANAVFGNAKLYGPDEQQAYLLVRLAAPQENSLVAVYSITRGNRRAYLQAEELKADAPLAELLPSPATLLRLLKANGELTLSHVPAEPAGSWLELLVRTLRLDTGVRVELSGKHAQEWRDALRGQGVLNSRMELGQSEVEGLHLNWLR", "sequence_length": 268, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7037651a264d0b32eef8612bc170b70d4d652c06d9258cd7f44e56905b14098e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9I398.json", "taxon_id": "208964", "uniprot_accession": "Q9I398", "uniprot_release": "2026_03" } ], "pfam_id": "PF16234", "short_name": "DUF4892", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16235", "short_name": "DUF4894", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4895-pf16236.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16236", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4895-pf16236.yaml" } ], "pfam_ids": [ "PF16236" ], "protein_name": "Uncharacterized protein TM_0928", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRELELLLKETSVHNPLKDYESKLDNVHLHTFVLRIKRHRFPSLFLMIDTSDRRLLNLSVEDPFDREPCIYRVEADVPESMVSFYTKLFEKVDSVSAGIFRMPLKVKVLRSAGNESWLQKIFLQEKVKNMEFFLFQNRVSDENLEKMMKLLKSRLKIVLRNEGIDVFLETPEWVDKEHISLLHEMGVVLRKKKGIQPAQNPMEQAFLTLRVGYDQFFEEDFDMEYFAKDFMEKLKRMYEVLVSML", "sequence_length": 246, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f08df537123bae25a6b18d661b99078aff060facaadbabd5d978de8fe63ea4b2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P56728.json", "taxon_id": "243274", "uniprot_accession": "P56728", "uniprot_release": "2026_03" } ], "pfam_id": "PF16236", "short_name": "DUF4895", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16237", "short_name": "DUF4896", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16238", "short_name": "DUF4897", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sulfolobus islandicus filamentous virus (isolate Iceland/Hveragerdi)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4898-pf16239.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4898-pf16239.yaml" } ], "pfam_ids": [ "PF16239" ], "protein_name": "Uncharacterized protein 27", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEFIIKIAGTKGISNFKSYHFSIISNYENFFNFILPKDVKDVLVVLPFDEEKTKTIKHAITNARSNVSVTIMYSGKIRDEMIIGWRT", "sequence_length": 88, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3d593d1d27f36525a0f79370765f886b8cf10813e0999262d1448fb4b110e927", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q914K3.json", "taxon_id": "654908", "uniprot_accession": "Q914K3", "uniprot_release": "2026_03" } ], "pfam_id": "PF16239", "short_name": "DUF4898", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16240", "short_name": "DUF4899", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16241", "short_name": "DUF4900", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ycdb-ycdc-repeated-domain-ipr032599.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032599", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ycdb-ycdc-repeated-domain-ipr032599.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4901-pf16244.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16244", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4901-pf16244.yaml" } ], "pfam_ids": [ "PF16244" ], "protein_name": "Uncharacterized protein YcdB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKGAAFVKKEGLKQKALEIGRVPTHLKLEIEDYGGDDKRAHFCWADPQDENTGIIVELGPDGELESLSRDIEPESGERLSEEKLEDIMRQFVETHHPGALSAFVREENDRAYGDKVRFSYVQMEAGLPLPMSGFMADVSLSGEIVYFRYYGEAGSIIKPKRVADVEEALAFIKKDVEFDLLFEVLHRSVYKNGDDQPHLVYEPEGRAITVPADLVQEEQAVDDDDDYREPESFPLPLFEGIREKADPDSMIGIENGFVKEREADLGDGRIGIVWRNPDDPVYQPADKSMDSWFKGRTHQVLKTIYNKETGKLEGVMSFMEKKGPLTVTLAECEKIALRFLFALFPNADQYFRIRYDEKDEEENAVAGFTFEAHCHGVPLRFGQIRICVSRQTGYITVYMGPDIDPNKLATIDPVPAISVEQAKSIFWQHFKVELGWEREYGDDEEHSYRLVYKPVYPHFIDAHTGEPVFSIW", "sequence_length": 472, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1829771da092527849fcf22b13824261d1896b7ec5c8eb28c5ac0cc93737206c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34621.json", "taxon_id": "224308", "uniprot_accession": "O34621", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ycdb-ycdc-repeated-domain-ipr032599.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032599", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ycdb-ycdc-repeated-domain-ipr032599.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4901-pf16244.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16244", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4901-pf16244.yaml" } ], "pfam_ids": [ "PF16244" ], "protein_name": "Uncharacterized protein YcdC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVNKQLKKKAQEIGNVPTHYELEIEDYDQKQKKYGQAYFIWKDPKDPEKHITVELRNDGALLTFSTTVHSETDKKLPDAELKLTALQFAAANHPGTFMNFHFQGKEERGQHIRFVYTKMELGLPIPNSGFLIDMTRSGQIVHFLYYGEGHKAEVPTEFVAKEKVVSHYLNTMSFELMYDVIDGEQEPRLVYEPILPGYSYPADVDEIVPDQHIADERIENTAPLPPLQNKEEVDIFALLGFTSDMQKVSERDFGEQIGSTWRRGAAPERKDLSIGSYFETRNKNTIKMKTDKRTGKLKAALSFMDWRNNLQCSTEECQEIALQFLYALYPRAAEFFRVNPVRIDERGRVRNHFSVWYKGVPLRFGAARIIVNPETGLIDAFMAPDIEPEQLEAINHRPDVSAEEAKEAFLAAFDVKLEWQPDFTAGSDQHCKLVYKPVYPSYIDAHIRKKKRL", "sequence_length": 453, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2e5b9935b81a6c11cdd1f0e268e8e888003b132899e2b3500dceb7e4e10a020c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34772.json", "taxon_id": "224308", "uniprot_accession": "O34772", "uniprot_release": "2026_03" } ], "pfam_id": "PF16244", "short_name": "DUF4901", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16245", "short_name": "DUF4902", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16246", "short_name": "DUF4903", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16247", "short_name": "DUF4904", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16248", "short_name": "DUF4905", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16249", "short_name": "DUF4906", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16250", "short_name": "DUF4907", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16252", "short_name": "DUF4908", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16253", "short_name": "DUF4909", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2172-pf09940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2172-pf09940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4910-pf16254.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4910-pf16254.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-47-pf16221.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16221", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-47-pf16221.yaml" } ], "pfam_ids": [ "PF09940", "PF16221", "PF16254" ], "protein_name": "Putative polysaccharide biosynthesis protein with aminopeptidase-like domain", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEINKYIQNSSETGGEIYNLIEELFPICRSITGNGVRKTMDIIRKHIPLEIHEVKSGTKVFDWTVPKEWNIKDAYVRNSKGEKVIDFKENNLHVMSYSVPVHKTMTLDELKPYLHTIPGNKDRIPYLTSYYKENWGFSLTQNKFDELCDDDYEVVIDSSLEDGSLTYGEYYIRGELEEEILLTTYTCHPSMCNDNLSGVALITFIAKALSKLKTKYSYRFLFAPETIGSITWLSRNEDKLKNIKMGLVATCVGDAGIKNYKRTKFGDAEIDKIVEKVLMHCGSEYYVADFFPWGSDERQFSSPGINLPVGSLMRSCYGFDGYHTSADNLCYMNKDGLADSYKTYLEVIYTIENNRTYLNLNPKCEPQLGKRGIYRMIGGGSDYPFDEFAMFWVLNMSDGKNSLLDIAYKSGMEFRRIKYAADALYRVELLKLV", "sequence_length": 434, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1ca5c785e695c8b557618f2496661007c03bca971086b400747aa02c1cb8c867", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q97H19.json", "taxon_id": "272562", "uniprot_accession": "Q97H19", "uniprot_release": "2026_03" } ], "pfam_id": "PF16254", "short_name": "DUF4910", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16256", "short_name": "DUF4911", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Treponema pallidum (strain DSM 117211 / Nichols)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4912-pf16258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4912-pf16258.yaml" } ], "pfam_ids": [ "PF16258" ], "protein_name": "Uncharacterized protein TP_0359", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALTKSFLESRSTGELFALADELGLCLPEDLNRRLVIGEILDCYHSALDLNPPCAPQSLESKGTSCAYNTTEIHILARDPLWFFVFWDIHEQLFCTLTQSPQFRSFFLRVHSLGGHGWHTSLDHFDIDVPLKDRKRYVHLSLADDANRIDLCCKMLQRERILAQSRVVTLQRSVIERSLNPEDPTGAEVLSLCGLPLLEETYPSTSLPVCS", "sequence_length": 211, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6d026321c35cf0d82c07ca08b6839ed1ea72b389e17ab69ee65d14e62ffc8b34", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O83378.json", "taxon_id": "243276", "uniprot_accession": "O83378", "uniprot_release": "2026_03" } ], "pfam_id": "PF16258", "short_name": "DUF4912", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16259", "short_name": "DUF4913", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16260", "short_name": "DUF4914", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16261", "short_name": "DUF4915", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16262", "short_name": "DUF4916", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16263", "short_name": "DUF4917", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16266", "short_name": "DUF4919", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16267", "short_name": "DUF4920", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16268", "short_name": "DUF4921", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16269", "short_name": "DUF4922", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16270", "short_name": "DUF4923", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16271", "short_name": "DUF4924", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16272", "short_name": "DUF4925", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16277", "short_name": "DUF4926", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4927-pf16279.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16279", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4927-pf16279.yaml" } ], "pfam_ids": [ "PF00989", "PF07469", "PF08815", "PF08832", "PF14598", "PF16279", "PF16665", "PF23172" ], "protein_name": "Nuclear receptor coactivator 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGLGESSLDPLAAESRKRKLPCDAPGQGLVYSGEKWRREQESKYIEELAELISANLSDIDNFNVKPDKCAILKETVRQIRQIKEQGKTISSDDDVQKADVSSTGQGVIDKDSLGPLLLQALDGFLFVVNRDGNIVFVSENVTQYLQYKQEDLVNTSVYSILHEPRRKDFLNTYQNPQLMEFLGLMRTRDKKAPYILIVRMLMKTHDILEDVNASPETRQRYETMQCFALSQPRAMLEEGEDLQCCMICVARRVTAPFPSSPESFITRHDLSGKVVNIDTNSLRSSMRPGFEDIIRRCIQRFFSLNDGQSWSQKRHYQEAYVHGHAETPVYRFSLADGTIVSAQTKSKLFRNPVTNDRHGFISTHFLQREQNGYRPNPIPQDKGIRPPAAGCGVSMSPNQNVQMMGSRTYGVPDPSNTGQMGGARYGASSSVASLTPGQSLQSPSSYQNSSYGLSMSSPPHGSPGLGPNQQNIMISPRNRGSPKMASHQFSPAAGAHSPMGPSGNTGSHSFSSSSLSALQAISEGVGTSLLSTLSSPGPKLDNSPNMNISQPSKVSGQDSKSPLGLYCEQNPVESSVCQSNSRDPQVKKESKESSGEVSETPRGPLESKGHKKLLQLLTCSSDDRGHSSLTNSPLDPNCKDSSVSVTSPSGVSSSTSGTVSSTSNVHGSLLQEKHRILHKLLQNGNSPAEVAKITAEATGKDTSSTASCGEGTTRQEQLSPKKKENNALLRYLLDRDDPSDVLAKELQPQADSGDSKLSQCSCSTNPSSGQEKDPKIKTETNDEVSGDLDNLDAILGDLTSSDFYNNPTNGGHPGAKQQMFAGPSSLGLRSPQPVQSVRPPYNRAVSLDSPVSVGSGPPVKNVSAFPGLPKQPILAGNPRMMDSQENYGANMGPNRNVPVNPTSSPGDWGLANSRASRMEPLASSPLGRTGADYSATLPRPAMGGSVPTLPLRSNRLPGARPSLQQQQQQQQQQQQQQQQQQQQQQQMLQMRTGEIPMGMGVNPYSPAVQSNQPGSWPEGMLSMEQGPHGSQNRPLLRNSLDDLLGPPSNAEGQSDERALLDQLHTFLSNTDATGLEEIDRALGIPELVNQGQALESKQDVFQGQEAAVMMDQKAALYGQTYPAQGPPLQGGFNLQGQSPSFNSMMGQISQQGSFPLQGMHPRAGLVRPRTNTPKQLRMQLQQRLQGQQFLNQSRQALEMKMENPAGTAVMRPMMPQAFFNAQMAAQQKRELMSHHLQQQRMAMMMSQPQPQAFSPPPNVTASPSMDGVLAGSAMPQAPPQQFPYPANYGMGQPPEPAFGRGSSPPSAMMSSRMGPSQNAMVQHPQPTPMYQPSDMKGWPSGNLARNGSFPQQQFAPQGNPAAYNMVHMNSSGGHLGQMAMTPMPMSGMPMGPDQKYC", "sequence_length": 1398, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6abc80564d67aeb6edcdf3f6bed6ff2875ee0998db488e82eb2a3f7d0b09617d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O09000.json", "taxon_id": "10090", "uniprot_accession": "O09000", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/ncoa-u2-pf16665.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16665", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/ncoa-u2-pf16665.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bhlh-ncoa-pf23172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bhlh-ncoa-pf23172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1518-pf07469.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1518-pf07469.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4927-pf16279.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16279", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4927-pf16279.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q15596", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00989", "PF07469", "PF08815", "PF08832", "PF14598", "PF16279", "PF16665", "PF23172" ], "protein_name": "Nuclear receptor coactivator 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "873e4d8992906f338e9327452047a9bcc1098d2abd79347002ead3dd34e2fabd", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSGMGENTSDPSRAETRKRKECPDQLGPSPKRNTEKRNREQENKYIEELAELIFANFNDIDNFNFKPDKCAILKETVKQIRQIKEQEKAAAANIDEVQKSDVSSTGQGVIDKDALGPMMLEALDGFFFVVNLEGNVVFVSENVTQYLRYNQEELMNKSVYSILHVGDHTEFVKNLLPKSIVNGGSWSGEPPRRNSHTFNCRMLVKPLPDSEEEGHDNQEAHQKYETMQCFAVSQPKSIKEEGEDLQSCLICVARRVPMKERPVLPSSESFTTRQDLQGKITSLDTSTMRAAMKPGWEDLVRRCIQKFHAQHEGESVSYAKRHHHEVLRQGLAFSQIYRFSLSDGTLVAAQTKSKLIRSQTTNEPQLVISLHMLHREQNVCVMNPDLTGQTMGKPLNPISSNSPAHQALCSGNPGQDMTLSSNINFPINGPKEQMGMPMGRFGGSGGMNHVSGMQATTPQGSNYALKMNSPSQSSPGMNPGQPTSMLSPRHRMSPGVAGSPRIPPSQFSPAGSLHSPVGVCSSTGNSHSYTNSSLNALQALSEGHGVSLGSSLASPDLKMGNLQNSPVNMNPPPLSKMGSLDSKDCFGLYGEPSEGTTGQAESSCHPGEQKETNDPNLPPAVSSERADGQSRLHDSKGQTKLLQLLTTKSDQMEPSPLASSLSDTNKDSTGSLPGSGSTHGTSLKEKHKILHRLLQDSSSPVDLAKLTAEATGKDLSQESSSTAPGSEVTIKQEPVSPKKKENALLRYLLDKDDTKDIGLPEITPKLERLDSKTDPASNTKLIAMKTEKEEMSFEPGDQPGSELDNLEEILDDLQNSQLPQLFPDTRPGAPAGSVDKQAIINDLMQLTAENSPVTPVGAQKTALRISQSTFNNPRPGQLGRLLPNQNLPLDITLQSPTGAGPFPPIRNSSPYSVIPQPGMMGNQGMIGNQGNLGNSSTGMIGNSASRPTMPSGEWAPQSSAVRVTCAATTSAMNRPVQGGMIRNPAASIPMRPSSQPGQRQTLQSQVMNIGPSELEMNMGGPQYSQQQAPPNQTAPWPESILPIDQASFASQNRQPFGSSPDDLLCPHPAAESPSDEGALLDQLYLALRNFDGLEEIDRALGIPELVSQSQAVDPEQFSSQDSNIMLEQKAPVFPQQYASQAQMAQGSYSPMQDPNFHTMGQRPSYATLRMQPRPGLRPTGLVQNQPNQLRLQLQHRLQAQQNRQPLMNQISNVSNVNLTLRPGVPTQAPINAQMLAQRQREILNQHLRQRQMHQQQQVQQRTLMMRGQGLNMTPSMVAPSGMPATMSNPRIPQANAQQFPFPPNYGISQQPDPGFTGATTPQSPLMSPRMAHTQSPMMQQSQANPAYQAPSDINGWAQGNMGGNSMFSQQSPPHFGQQANTSMYSNNMNINVSMATNTGGMSSMNQMTGQISMTSVTSVPTSGLSSMGPEQVNDPALRGGNLFPNQLPGMDMIKQEGDTTRKYC", "sequence_length": 1464, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "873e4d8992906f338e9327452047a9bcc1098d2abd79347002ead3dd34e2fabd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q15596.json", "taxon_id": "9606", "uniprot_accession": "Q15596", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/ncoa-u2-pf16665.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16665", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/ncoa-u2-pf16665.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bhlh-ncoa-pf23172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bhlh-ncoa-pf23172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1518-pf07469.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1518-pf07469.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4927-pf16279.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16279", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4927-pf16279.yaml" } ], "pfam_ids": [ "PF00989", "PF07469", "PF08815", "PF08832", "PF14598", "PF16279", "PF16665", "PF23172" ], "protein_name": "Nuclear receptor coactivator 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGLGENLDPLASDSRKRKLPCDTPGQGLTCSGEKRRREQESKYIEELAELISANLSDIDNFNVKPDKCAILKETVRQIRQIKEQGKTISNDDDVQKADVSSTGQGVIDKDSLGPLLLQALDGFLFVVNRDGNIVFVSENVTQYLQYKQEDLVNTSVYNILHEEDRKDFLKNLPKSTVNGVSWTNETQRQKSHTFNCRMLMKTPHDILEDINASPEMRQRYETMQCFALSQPRAMMEEGEDLQSCMICVARRITTGERTFPSNPESFITRHDLSGKVVNIDTNSLRSSMRPGFEDIIRRCIQRFFSLNDGQSWSQKRHYQEAYLNGHAETPVYRFSLADGTIVTAQTKSKLFRNPVTNDRHGFVSTHFLQREQNGYRPNPNPVGQGIRPPMAGCNSSVGGMSMSPNQGLQMPSSRAYGLADPSTTGQMSGARYGGSSNIASLTPGPGMQSPSSYQNNNYGLNMSSPPHGSPGLAPNQQNIMISPRNRGSPKIASHQFSPVAGVHSPMASSGNTGNHSFSSSSLSALQAISEGVGTSLLSTLSSPGPKLDNSPNMNITQPSKVSNQDSKSPLGFYCDQNPVESSMCQSNSRDHLSDKESKESSVEGAENQRGPLESKGHKKLLQLLTCSSDDRGHSSLTNSPLDSSCKESSVSVTSPSGVSSSTSGGVSSTSNMHGSLLQEKHRILHKLLQNGNSPAEVAKITAEATGKDTSSITSCGDGNVVKQEQLSPKKKENNALLRYLLDRDDPSDALSKELQPQVEGVDNKMSQCTSSTIPSSSQEKDPKIKTETSEEGSGDLDNLDAILGDLTSSDFYNNSISSNGSHLGTKQQVFQGTNSLGLKSSQSVQSIRPPYNRAVSLDSPVSVGSSPPVKNISAFPMLPKQPMLGGNPRMMDSQENYGSSMGGPNRNVTVTQTPSSGDWGLPNSKAGRMEPMNSNSMGRPGGDYNTSLPRPALGGSIPTLPLRSNSIPGARPVLQQQQQMLQMRPGEIPMGMGANPYGQAAASNQLGSWPDGMLSMEQVSHGTQNRPLLRNSLDDLVGPPSNLEGQSDERALLDQLHTLLSNTDATGLEEIDRALGIPELVNQGQALEPKQDAFQGQEAAVMMDQKAGLYGQTYPAQGPPMQGGFHLQGQSPSFNSMMNQMNQQGNFPLQGMHPRANIMRPRTNTPKQLRMQLQQRLQGQQFLNQSRQALELKMENPTAGGAAVMRPMMQPQVSSQQGFLNAQMVAQRSRELLSHHFRQQRVAMMMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTQAFSPPPNVTASPSMDGLLAGPTMPQAPPQQFPYQPNYGMGQQPDPAFGRVSSPPNAMMSSRMGPSQNPMMQHPQAASIYQSSEMKGWPSGNLARNSSFSQQQFAHQGNPAVYSMVHMNGSSGHMGQMNMNPMPMSGMPMGPDQKYC", 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"candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16285", "short_name": "DUF4931_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16286", "short_name": "DUF4932", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16287", "short_name": "DUF4933", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16288", "short_name": "DUF4934", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16289", "short_name": "PIN_12", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16290", "short_name": "DUF4936", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4937-ipr032555.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032555", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4937-ipr032555.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4937-pf16291.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16291", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4937-pf16291.yaml" } ], "pfam_ids": [ "PF16291" ], "protein_name": "Uncharacterized protein YdbC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLIKKMICEVDAANAEAFAKAQSQWEALSHISGFIKQAGGWRKTIDEPLTAEIISVWENREAYDHFMENEHDSIYEENDQKAVILSIEVTVYEEDKPFVHDLLHNPDIRYEPNWTVLKA", "sequence_length": 119, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "29ac0ee4cc9685e8170f48ae6f21523687ba09e4cbb8cf0631084c09f4d37479", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P96598.json", "taxon_id": "224308", "uniprot_accession": "P96598", "uniprot_release": "2026_03" } ], "pfam_id": "PF16291", "short_name": "DUF4937", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16292", "short_name": "DUF4938", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 11, "discovery_scanned": true, "example_count": 11, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/retropepsins-pepsin-like-aspartate-proteases-the-family-includes-pepsi-cd00303.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd00303", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/retropepsins-pepsin-like-aspartate-proteases-the-family-includes-pepsi-cd00303.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/rt-ltr-reverse-transcriptases-rts-from-retrotransposons-and-retrovirus-cd01647.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd01647", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/rt-ltr-reverse-transcriptases-rts-from-retrotransposons-and-retrovirus-cd01647.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/reverse-transcriptase-retrotransposon-derived-protein-rnase-h-like-dom-ipr041577.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041577", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/reverse-transcriptase-retrotransposon-derived-protein-rnase-h-like-dom-ipr041577.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rt-rnaseh-2-pf17919.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17919", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rt-rnaseh-2-pf17919.yaml" } ], "pfam_ids": [ "PF16297", "PF17919", "PF30863", "PF30901" ], "protein_name": "Retrotransposon-like protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIEPSEDSFETMMEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAGPASGPAQEKKEPPSGPLQEMEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEESCNGSHQARGDPLSGASDRMKEASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHSTAELMAMVRSIISLYFRMQDLKEQQRVAEEILIKGINAGQLPAPKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQENSPLIGDFPAFLEAMSEVFEYRQALRVAEEAMFTIRQGGRSATEYIDEFQSLVPILGWPDEVLQAHLCQGLNEEIRHYLFRVPQPDSLDSLIVLILQIEEKLAERRAMLRLPPEARPRNLTWIDSPAPERWMVSSWLPSEVHPDINRAHLFLLLMVRVNPYHSVAVQALVDSGADGNFMDEKFAQEHYVELYEKPYPQPVQSVDGSLIGNEPVWLYTEPLVCIHQNHQESIEFDIVPSPNFSVVLGIRWLRVHAPEVDWIKGRCTFHSPYCLKNCFRPPPPCIALERHGMSLLPGLPHPYSDLADVFNPKEADDETSDQPSSDGSDDLSESEPSELQQAGDSDHSETFYECPSTAPWEPVGARMQERARLQEEYWDLQDMLTNRQDYIQMIPELFDQLHGAEWFTKLELRGTIVEESVNGHRTEDVWKAAFGLELEEMKSYQPFALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPIRAAFMVWCRYLENTEEPIMILLNTEDLASLNNDRLTVLLPGHWVFFFSHFNFDVMELPEQDGGRALPPVRNLRWRRAFQRNTAARQTLLLASRGFPRDPSTESGEEENEEQDELNEQILRQELLAMIPIDQILNSFLAHFSMAQIRAVILHFFRGLLYWKNTLALAAILVLLRVRQCLSLRPAPAMRVARPQPQRSLRLILDSSLIAGSSITTAITQLLTQMPALVGANTIPAQELAELFLGPGRWQRNALHSQAHRGLQFTPGFWLTLCEFFGVRVTPQEGHLPALRQNRYLELHVVGDEDVVLREALQDDLQRYRQCGLHDGLQDTSQDKQDNDVQEAPPSHTAATHPPRPRHLMDPQVLEFLGSRLLHIHSADGQLHLLSREQAARALSQFLTLIYRRALPIPAWESQPREQARLEELPDEDEDANLD", "sequence_length": 1358, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "685cbde74c66462c1efbd896c72f9392855d0a26fec206c3f1933fe3198df53f", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/A6NKG5.json", "taxon_id": "9606", "uniprot_accession": "A6NKG5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rtl1-3-8-ldoc-capsid-like-domain-ipr032549.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rtl1-3-8-ldoc-capsid-like-domain-ipr032549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rtl1-8-ldoc-pf16297.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rtl1-8-ldoc-pf16297.yaml" } ], "pfam_ids": [ "PF16297" ], "protein_name": "Retrotransposon Gag-like protein 8C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDGRVQLIKALLALPIRPATRRWRNPIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSSDALKVTFLITRLTGPALQWVIPYIKKESPLLNDYRGFLAEMKRVFGWEEDEDF", "sequence_length": 113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7a2078bb0326f9401c1fa0f38c66b825d0e8e80f8e7af1500b22654320b83b01", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6ZKI3.json", "taxon_id": "9606", "uniprot_accession": "A6ZKI3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rtl1-3-8-ldoc-capsid-like-domain-ipr032549.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rtl1-3-8-ldoc-capsid-like-domain-ipr032549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rtl1-8-ldoc-pf16297.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rtl1-8-ldoc-pf16297.yaml" } ], "pfam_ids": [ "PF16297" ], "protein_name": "Protein LDOC1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVDELVLLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRPPSCPVPFPETFNGESSRLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQCFGWDDDEDDDDEEEEDDY", "sequence_length": 146, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6477d4308db581159fa0b4be93ff0b1ba06fff9b4f9a04acad112c2f11096b95", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O95751.json", "taxon_id": "9606", "uniprot_accession": "O95751", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rtl1-3-8-ldoc-capsid-like-domain-ipr032549.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rtl1-3-8-ldoc-capsid-like-domain-ipr032549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rtl1-8-ldoc-pf16297.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rtl1-8-ldoc-pf16297.yaml" } ], "pfam_ids": [ "PF16297" ], "protein_name": "Retrotransposon Gag-like protein 8B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGRVQLMKALLARPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIKKESPLLSDYRGFLAEMKRVFGWEEDEDF", "sequence_length": 113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "17b4b74a43e121aa97602b2f3c227931c213ab2e9943c4d77ef795d950a29015", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q17RB0.json", "taxon_id": "9606", "uniprot_accession": "Q17RB0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rtl1-3-8-ldoc-capsid-like-domain-ipr032549.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rtl1-3-8-ldoc-capsid-like-domain-ipr032549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rtl1-8-ldoc-pf16297.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rtl1-8-ldoc-pf16297.yaml" } ], "pfam_ids": [ "PF16297" ], "protein_name": "Retrotransposon Gag-like protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVQPRTSKTESPASAPGASAQMDDVVDTLTSLRLTNSALRREASTLRAEKANLTNMLESVMAELTLLRTRARIPGALQITPPISAITSNGTRPMTTPPTSLPEPFSGDPGQLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQPDSPLRNNYQGFLAELRRTYKSPLRHSRRAQIRKTSASNRAVRERERERQMLCRQLAAAGTGSCPVHPASNGTNPAPALPSRGRNL", "sequence_length": 243, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3250a98147530ad4676f773bd34f1d7f72a98a6f3ac98c064449fd48c1385b6c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q505G4.json", "taxon_id": "10090", "uniprot_accession": "Q505G4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rtl1-3-8-ldoc-capsid-like-domain-ipr032549.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rtl1-3-8-ldoc-capsid-like-domain-ipr032549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rtl1-8-ldoc-pf16297.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rtl1-8-ldoc-pf16297.yaml" } ], "pfam_ids": [ "PF16297", "PF30901" ], "protein_name": "Retrotransposon Gag-like protein 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEAAGNLNSLRLANVALREELNALRGENVQLGLQLGRALAEVNSLRGNVSSYIRWPMPIVPVLAEENFEFLLNETDPTPEEEEEEEEEVPFLCWPPPRTDPEYVSDDLLINVVQDYTNPDGSSDPPLSPSPSQPELHSPMLKEPTFEFLLPPLERPDIEPFSGDPVYLAEFLMQLETFIADHEDHFPGGAERVAFLISFFTGEARDWAISVTQEGSSLHANFPRFLDEIRKEFCGPIPSRVAKKAIRKLKQGNCTLGSYADAFQFLAQFLSWDDCRLQNQFLKGLSEIFRKELLWSTEVADLDELILECVKIERKVRVPKTASLTGVQNSCCPFALIPNEDENEGVEFYSENEGEGEEAGGYRLYLKDQRQHMTAFPQEMREEEEEMRKEEDEMEDEEDEDEDEDYEFEEEDEDDDDEEEEEEEEEEEDKEEEMKNEDSDENKYEEEDEVIVRVLEPEQEQEREEIEHEHVYVHEHIHAHVHTLAAHHHGLHGELMVMDEPVLVDTSTQTISSAIGYHAENYLGVSPSVMHSSRQRSQNRVPLLEGLPGTNSSFYSPPPLMRHAGRLGQRQMRRCPSVLFCLTPRQGGHRATQGRIRV", "sequence_length": 599, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "813cb98b4b8e66f69379adc3f7b5b60100b23896f6309f6f9067ec97b50f3115", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5DTT4.json", "taxon_id": "10090", "uniprot_accession": "Q5DTT4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rtl1-3-8-ldoc-capsid-like-domain-ipr032549.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rtl1-3-8-ldoc-capsid-like-domain-ipr032549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rtl1-8-ldoc-pf16297.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rtl1-8-ldoc-pf16297.yaml" } ], "pfam_ids": [ "PF16297", "PF30901" ], "protein_name": "Retrotransposon Gag-like protein 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEASGNLNSLRMANVALREELNALRGENANLGLQLGRALAEVNSLRGNVSSYIRWPVPIVPVLAEENLEFALSEIEVIPGGELPFLCRPPPRAEPDCISDDLLINVIQDRSTPDGPADPPLLPIPPPPALPPPASKEPPPQPPLAPLERPEIEPFSGDPVYLAEFLMQLETFIADHEVHFPGGAERVAFLISFFTGEAKDWAISVTQEGSPLHANFPRFLDEIRKEFCGPIPPRVAKKAIRKLKQGHCTLGSYADAFQFLAQFLSWDDCRLQNQFLKGLSEFFRKELLWSTEMADLDELILECVEIERKVRVPKPIPLPGVRNIIFPFAPSPNEEESEDEEYYSEDEDQEARRHRLHSKDQRKRMRAFQQEMKEKEEEEMKKEEEMKKKEEKEEEEEEEMKQKEEEEEIRNKNEEEGESKDEEDEDEDGGQKPEGEPQQDPGTEETYGEVEEEPLDEAQDDDLDELMEMEPTFVHASSQTSGPTSGYHAENFLGASPPIIQPSRRRNQNRVPLLEGLPGTNSPFYSSPQLIRRTGRLGQRQVRRRPPVLFRLTPRQGGHRAARGRIRV", "sequence_length": 569, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f77aee6af2a7d6c741d1335d303a794a3caf880b057aa441bf3ecd6b6d8ff0aa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5HYW3.json", "taxon_id": "9606", "uniprot_accession": "Q5HYW3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rtl1-3-8-ldoc-capsid-like-domain-ipr032549.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rtl1-3-8-ldoc-capsid-like-domain-ipr032549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rtl1-8-ldoc-pf16297.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rtl1-8-ldoc-pf16297.yaml" } ], "pfam_ids": [ "PF16297" ], "protein_name": "Protein Bop", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPRGRCRQQGPRIPIWAAANYANAHPWQQMDKASPGVAYTPLVDPWIERPCCGDTVCVRTTMEQKSTASGTCGGKPAERGPLAGHMPSSRPHRVDFCWVPGSDPGTFDGSPWLLDRFLAQLGDYMSFHFEHYQDNISRVCEILRRLTGRAQAWAAPYLDGDLPLPDDYELFCQDLKEVVQDPNSFAEYHAVVTCPLPLASSQLPVAPQLPVVRQYLARFLEGLALDMGTAPRSLPAAMATPAVSGSNSVSRSALFEQQLTKESTPGPKEPPVLPSSTCSSKPGPVEPASSQPEEAAPTPVPRLSESANPPAQRPDPAHPGGPKPQKTEEEVLETEGDQEVSLGTPQEVVEAPETPGEPPLSPGF", "sequence_length": 364, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c764aa32c46a1ccfe1b141080d228d2005b1592bdb15e8766fa38497ba336fc2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7L3V2.json", "taxon_id": "9606", "uniprot_accession": "Q7L3V2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/skeletal-muscle-satellite-cell-proliferation-go0014841.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0014841", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/skeletal-muscle-satellite-cell-proliferation-go0014841.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/retropepsins-pepsin-like-aspartate-proteases-the-family-includes-pepsi-cd00303.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd00303", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/retropepsins-pepsin-like-aspartate-proteases-the-family-includes-pepsi-cd00303.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/reverse-transcriptase-retrotransposon-derived-protein-rnase-h-like-dom-ipr041577.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041577", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/reverse-transcriptase-retrotransposon-derived-protein-rnase-h-like-dom-ipr041577.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rt-rnaseh-2-pf17919.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17919", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rt-rnaseh-2-pf17919.yaml" } ], "pfam_ids": [ "PF16297", "PF17919", "PF30863", "PF30901" ], "protein_name": "Retrotransposon-like protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIEPSEDSFETMMELKNPSSKQMESSEGSSNTVEETPGSSGAQAGAQAGAQAEAQAETQVEAQAEAQAEAQVEAQVEAQAGSDSGPAQEEKEPPSGPLKEMQELPTNLLQEVEEPSSGPHQEMQELPTDLLQEVEEPSSGPHQEMQELPTDLLREVEEPSSGPYQEMQELPTDLLREVEEPSSGPYQEMQELPTDLLREVEEPSSGPYQEMQELPTDLLREVEEPSSGPYQEMQELPTDLLREVEEPSSDPCEASSNDLPQDMEESSDDGSNQESSDGSNHELSNGSNHESSFGSNPESSDVSNLESSGGSNQESSDGSQKESSYDSNPELSDNSNQELSDNSNQESSDSSNQSSDISNQEGSEPLSEASDYSMDETINSSETQSDQDDTDLGDDEEEEEEEGGEEEGQPKNSPEEVVATMGNVISLFLRMQDLKEQQRVAERLMMQAINEGRLPSLRPFSGDRRDYHEFVVLCQMTMQNYPSMLYNDELRVKFVIRHLTDLALEWANDLVEQNSPVINNFSAFLEAMSEKFEYRQTLRVAEDAMFNIRQGNRCAADYINEFRGLIPTLGWPDEVLQAHLCQGLNEEIRHYLFRIPQPNSLDNLIVLVLQLEEKLAERRALLRLPPESRPRSVAWMDAPAPEKWRVSSWLPNEFHPDIDRDHLFLLLLVRVDPYHSVAVRALVDSGAEGNYMDERFAQEHYVELYEKPYPQIIQGVDGIPIGNEPVWLCTEPLVCVHQKHYEYIEFDILPSPNFSIVLGMKWLRTHAPEVDWMRGRCTFHSPYCLRNCFTPPPPCIALETYSISLLPGLPHTYSDLADVFNPREADDETSDQPSSDGSDDLSESEPSELQQAGDSDQSGVFYESGARETLEPVSARMQEKARQQEKAREQEEYWILYDMLTDRQDYTQMVPELFDQLHGAAWFTKLELLGIKESEMRHTVTHTEDTWRASFGFGLHQMRCYRPFTMNSYSDEGNNIVHFILKDILGLFVICHGREVLVYSMSQEEHSQHVRQVLVRFRYHNIYCSLDKTQFHRQTAEILGFNISPKGVKLNKNLMNLIVGCPVPGSRRCLQSVIDLVYPYRHFVENFAVIAAPLVRQLLSSEPYYWGEEEQEALESLKRAFRKSPVLYHPKPQNPFYLETDITGSFLSASLVQTDDETGKKSTCAFYSRPLSTMEVEYPRVEMRILPIRAAFMVWCRYLENTEEPIMILLNTEDLASLNNDRLTVLLPGHWVFFFSHFNFGVMEMPAEGDTQALFRRCWNQRGFRARFLRPLLLMSIRANLRYFDRSSETEDKEDDEEEEEEDGEEEEGEEEEDGEEEEGEEEEDGEEEEEEEEDDEEEEGEEEEDGEEEEGEEEEDGEEEEGEEEEDGEEEEGEEEGEEEEEGEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEEEDEEEEDEEVPSMVRELLAAIPMDHILNGLLAHFSVAQIRAVVLNFFRGLLYWKSLLGVAAVLVMLRARQPLSPVPAPNLEVARPQHRHTLRLILDSTLIASSGMATAIAQLLSQMPPLVGANTLPARELAELFLGPRCWHRNALHSQPPRGMRFTPGFWLTLCEFFGVRVNPEDDVFPDPYQHRYLELHVVGDEDVVLREALQDDLQRYRQCGLHDGLQDTSQDAQDNDVQEDLFGDQEAVTFRPRNLLDPEVLDFLNNRLLYTLGTDGRLTLLSRDQVAQALTRFLAMASRMALPSPAREQARLEELSDSDDELD", "sequence_length": 1744, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "be6369d0fc0af236143d8915371b3c4e93ec3c45d1f669ce810e16fb002b5bbf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7M732.json", "taxon_id": "10090", "uniprot_accession": "Q7M732", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/rtl1-3-8-ldoc-capsid-like-domain-ipr032549.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032549", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rtl1-3-8-ldoc-capsid-like-domain-ipr032549.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rtl1-8-ldoc-pf16297.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rtl1-8-ldoc-pf16297.yaml" } ], "pfam_ids": [ "PF16297" ], "protein_name": "Protein LDOC1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVEELLSLLHALLDRHQALCMENHQLLKQLRLLVCERARLLRQVCPPSCPVPYPSRFSGESGRLPEFIMQTMSYMLANEEHFCNDAMKVAFLISLLSGEAEEWVMPYIESNSYVLGDYQAFVDEMKQYFGWGTDDEDDGDDDEEEEMEEDH", "sequence_length": 151, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f71b03ca9b54b95cab77c705c336edf3ea4dfd66dcf4364ded23322ae670eccf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7TPY9.json", "taxon_id": "10090", "uniprot_accession": "Q7TPY9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/vesicle-mediated-intercellular-transport-go0110077.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0110077", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/vesicle-mediated-intercellular-transport-go0110077.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/retropepsins-pepsin-like-aspartate-proteases-the-family-includes-pepsi-cd00303.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd00303", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/retropepsins-pepsin-like-aspartate-proteases-the-family-includes-pepsi-cd00303.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/reverse-transcriptase-diguanylate-cyclase-domain-ipr043128.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR043128", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/reverse-transcriptase-diguanylate-cyclase-domain-ipr043128.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/hiv-type-1-reverse-transcriptase-subunit-a-domain-1-3-10-10-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.10.10.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/hiv-type-1-reverse-transcriptase-subunit-a-domain-1-3-10-10-10.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/reverse-transcriptase-diguanylate-cyclase-domain-3-30-70-270.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.30.70.270", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/reverse-transcriptase-diguanylate-cyclase-domain-3-30-70-270.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q86TG7", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF16297", "PF30863", "PF30901" ], "protein_name": "Retrotransposon-derived protein PEG10", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4e861147e076019cba41912948ac55649a68a48f77a15eb0b193c74356612efe", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTERRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIELRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGSVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERRLARAAAARKPRSPPRALVLPHIASHHQVDPTEPVGGARMRLTQEEKERRRKLNLCLYCGTGGHYADNCPAKASKSSPAGKLPGPAVEGPSATGPEIIRSPQDDASSPHLQVMLQIHLPGRHTLFVRAMIDSGASGNFIDHEYVAQNGIPLRIKDWPILVEAIDGRPIASGPVVHETHDLIVDLGDHREVLSFDVTQSPFFPVVLGVRWLSTHDPNITWSTRSIVFDSEYCRYHCRMYSPIPPSLPPPAPQPPLYYPVDGYRVYQPVRYYYVQNVYTPVDEHVYPDHRLVDPHIEMIPGAHSIPSGHVYSLSEPEMAALRDFVARNVKDGLITPTIAPNGAQVLQVKRGWKLQVSYDCRAPNNFTIQNQYPRLSIPNLEDQAHLATYTEFVPQIPGYQTYPTYAAYPTYPVGFAWYPVGRDGQGRSLYVPVMITWNPHWYRQPPVPQYPPPQPPPPPPPPPPPPSYSTL", "sequence_length": 708, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4e861147e076019cba41912948ac55649a68a48f77a15eb0b193c74356612efe", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q86TG7.json", "taxon_id": "9606", "uniprot_accession": "Q86TG7", "uniprot_release": "2026_03" } ], "pfam_id": "PF16297", "short_name": "RTL1-8_LDOC", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16298", "short_name": "DUF4940", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16299", "short_name": "DUF4941", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16301", "short_name": "DUF4943", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4944-pf16302.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4944-pf16302.yaml" } ], "pfam_ids": [ "PF16302" ], "protein_name": "Uncharacterized protein YdhH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSHYKYPLIFTAFLLIAFCLIFFSYHLIHHVRLEYPNWQGESKDQNWEAVFTKNEDAPNEYSGKLYWIGDTIEIDNTYLESLIVKKDDEVLLSSDTEIPMHDYAGGTFSDGSAKEKSVSFLERLDEHELEGHDITIEVKWKQGNHYSASQLTLNEKTLFDEKQQ", "sequence_length": 165, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d1b9a189106acb75295c28c1359bb512744889c340471b02a3db74b08815b35b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O05500.json", "taxon_id": "224308", "uniprot_accession": "O05500", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4944-pf16302.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4944-pf16302.yaml" } ], "pfam_ids": [ "PF16302" ], "protein_name": "Uncharacterized protein YoaO", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKKNNIKKWLLIIAGFLIICIITLFVMVSGNKVKYEGSGKSGLWMSNLEKSDKTSIGPNYFLNLYWQGSKKEEKWTVVERITLYVDGEKYQDDNVDEYDLSEYTGDEMPGGGRMEDHISTFDYMPEDEVIGHDVLVKVEWRTGQKKQTEAIKLHKKPWYKK", "sequence_length": 162, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e22c4ebd78010a901b0fc27d3560ef73d9bcd3c5a3ad0dba5d94f275490633a6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34985.json", "taxon_id": "224308", "uniprot_accession": "O34985", "uniprot_release": "2026_03" } ], "pfam_id": "PF16302", "short_name": "DUF4944", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16303", "short_name": "DUF4945", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16304", "short_name": "DUF4946", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16305", "short_name": "DUF4947", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16306", "short_name": "DUF4948", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16307", "short_name": "DUF4949", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16308", "short_name": "DUF4950", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16309", "short_name": "DUF4951", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16310", "short_name": "DUF4952", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16313", "short_name": "DUF4953", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Treponema pallidum (strain DSM 117211 / Nichols)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf4954-pf16314.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16314", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf4954-pf16314.yaml" } ], "pfam_ids": [ "PF16314" ], "protein_name": "Uncharacterized protein TP_0851", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRVQILDLPSFGYHFITQTHIPRGKDEYYLRFSQSAEPPRAWRPLSKEEIHTLIQKGNHCDTWHDVLVADPFDASLIRNSSFAGLVRIASLERRLLRYHDFTVPTGITHSTLISCDVGENCAIHHCAYISHYIIGNHVILSRIDELCTTNHAKFGAGIIKDGEQEAVRITIDPLNETGGRKIFPFVGMIAADAFLWACHRDRTLLMQRFESMTQQQHDTRRGYYGTIETQSVIKSCRIIKDVCFGPGSYVKGANKLKNLTVQSSLQEPTQIGEGVELVNGVIGYGCRVFYGVKAVRFVLGNNCALKYGTRLIHSVLGDNSTISCCEVLNALIFPYHEQHHNNSFLIAALIRGQSNIAAGSTIGSNHNTRKNDGEIIAGRGFWSGLASTLKHNCRFASFVLITGKNYPAELDIPFPFSLVTNNERENRLEIMPAYYWLYNMYAIERNEKKFAARDKRKTKTQTVEISVFAPDTIGEIENALALLDSAIERAWVNAGNSALTAEDIVLKHPTKAQTIPVLLTGIEHSTRSTLVLKPLEARKAYRDILIWYCTKTLLSFFEQTTRCISHFTSHDPKTITHNWVNMGGQLVPEDKFETLLQNIETGKFKSWHHIHKEYDALAATYETDKALHAYAVLCSLARTRIDAPLLCTYVQHAITIEKYRVTQIHKTRCKDYLNPFREITYRNPLERNAVLGTPEEDQLIRTTEEESAHLCALYARYIAPPHLG", "sequence_length": 724, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a396dcb272a098ddc498212d2a4db1cdc154a6b6f37d41a5ad699f75a9d61800", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O83823.json", "taxon_id": "243276", "uniprot_accession": "O83823", "uniprot_release": "2026_03" } ], "pfam_id": "PF16314", "short_name": "DUF4954", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16315", "short_name": "DUF4955", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16316", "short_name": "DUF4956", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16318", "short_name": "DUF4957", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16319", "short_name": "Ig_BT4661_1st", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16323", "short_name": "DUF4959", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16324", "short_name": "SGBP_levan-binding", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16328", "short_name": "DUF4961", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hepar-ii-iii-c-pf07940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hepar-ii-iii-c-pf07940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hepii-c-pf18675.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18675", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hepii-c-pf18675.yaml" } ], "pfam_ids": [ "PF07940", "PF16332", "PF18675" ], "protein_name": "Heparin and heparin-sulfate lyase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRQLYLYVIFVVVELMVFTTKGYSQTKADVVWKDVDGVSMPIPPKTHPRLYLREQQVPDLKNRMNDPKLKKVWADMIKMQEDWKPADIPEVKDFRFYFNQKGLTVRVELMALNYLMTKDPKVGREAITSIIDTLETATFKPAGDISRGIGLFMVTGAIVYDWCYDQLKPEEKTRFVKAFVRLAKMLECGYPPVKDKSIVGHASEWMIMRDLLSVGIAIYDEFPEMYNLAAGRFFKEHLVARNWFYPSHNYHQGMSYLNVRFTNDLFALWILDRMGAGNVFNPGQQFILYDAIYKRRPDGQILAGGDVDYSRKKPKYYTMPALLAGSYYKDEYLNYEFLKDPNVEPHCKLFEFLWRDTQLGSRKPDDLPLSRYSGSPFGWMIARTGWGPESVIAEMKVNEYSFLNHQHQDAGAFQIYYKGPLAIDAGSYTGSSGGYNSPHNKNFFKRTIAHNSLLIYDPKETFSSSGYGGSDHTDFAANDGGQRLPGKGWIAPRDLKEMLAGDFRTGKILAQGFGPDNQTPDYTYLKGDITAAYSAKVKEVKRSFLFLNLKDAKVPAAMIVFDKVVASNPDFKKFWLLHSIEQPEIKGNQITIKRTKNGDSGMLVNTALLPDAANSNITSIGGKGKDFWVFGTNYTNDPKPGTDEALERGEWRVEITPKKAAAEDYYLNVIQIADNTQQKLHEVKRIDGDKVVGVQLADRIVTFSKTSETVDRPFGFSVVGKGTFKFVMTDLLPGTWQVLKDGKILYPALSAKGDDGALYFEGTEGTYRFLR", "sequence_length": 772, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7a713946ac71f1ece8a3911d8b47f9c744ecd78de8523ae0ee069e82fd4345b9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C6XZB6.json", "taxon_id": "485917", "uniprot_accession": "C6XZB6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/dse-like-n-pf16332.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16332", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/dse-like-n-pf16332.yaml" } ], "pfam_ids": [ "PF16332" ], "protein_name": "Dermatan-sulfate epimerase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/chondroitin-glucuronate-5-epimerase-activity-go0047757.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/chondroitin-sulfate-proteoglycan-metabolic-process-go0050654.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050654", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/chondroitin-sulfate-proteoglycan-metabolic-process-go0050654.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/dermatan-sulfate-proteoglycan-biosynthetic-process-go0050651.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050651", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/dermatan-sulfate-proteoglycan-biosynthetic-process-go0050651.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/dermatan-sulfate-proteoglycan-metabolic-process-go0050655.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0050655", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/dermatan-sulfate-proteoglycan-metabolic-process-go0050655.yaml" }, { 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"data/traits/structure/homologous_superfamily/cath/2-70-98-70-2-70-98-70.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.70.98.70", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-70-98-70-2-70-98-70.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/chondroitin-ac-alginate-lyase-1-50-10-100.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.50.10.100", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/chondroitin-ac-alginate-lyase-1-50-10-100.yaml" } ], "pfam_ids": [ "PF16332" ], "protein_name": "Dermatan-sulfate epimerase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRTHTRGAPSVFFIYLLCFVSAYITDENPEVMIPFTNANYDSHPMLYFSRAEVAELQLRAASSHEHIAARLTEAVHTMLSSPLEYLPPWDPKDYSARWNEIFGNNLGALAMFCVLYPENIEARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQEKFLEVIANASGYMYETSYRRGWGFQYLHNHQPTNCMALLTGSLVLMNQGYLQEAYLWTKQVLTIMEKSLVLLREVTDGSLYEGVAYGSYTTRSLFQYMFLVQRHFNINHFGHPWLKQHFAFMYRTILPGFQRTVAIADSNYNWFYGPESQLVFLDKFVMRNGSGNWLADQIRRNRVVEGPGTPSKGQRWCTLHTEFLWYDGSLKSVPPPDFGTPTLHYFEDWGVVTYGSALPAEINRSFLSFKSGKLGGRAIYDIVHRNKYKDWIKGWRNFNAGHEHPDQNSFTFAPNGVPFITEALYGPKYTFFNNVLMFSPAVSKSCFSPWVGQVTEDCSSKWSKYKHDLAASCQGRVVAAEEKNGVVFIRGEGVGAYNPQLNLKNVQRNLILLHPQLLLLVDQIHLGEESPLETAASFFHNVDVPFEETVVDGVHGAFIRQRDGLYKMYWMDDTGYSEKATFASVTYPRGYPYNGTNYVNVTMHLRSPITRAAYLFIGPSIDVQSFTVHGDSQQLDVFIATSKHAYATYLWTGEATGQSAFAQVIADRHKILFDRNSAIKSSIVPEVKDYAAIVEQNLQHFKPVFQLLEKQILSRVRNTASFRKTAERLLRFSDKRQTEEAIDRIFAISQQQQQQSKSKKNRRAGKRYKFVDAVPDIFAQIEVNEKKIRQKAQILAQKELPIDEDEEMKDLLDFADVTYEKHKNGGLIKGRFGQARMVTTTHSRAPSLSASYTRLFLILNIAIFFVMLAMQLTYFQRAQSLHGQRCLYAVLLIDSCILLWLYSSCSQSQC", "sequence_length": 958, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ac88a6ee7d317176e7bb5736e064121e69564d634c5e9b5e337a889501f5e60e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UL01.json", "taxon_id": "9606", "uniprot_accession": "Q9UL01", "uniprot_release": "2026_03" } ], "pfam_id": "PF16332", "short_name": "DSE-like_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16334", "short_name": "DUF4964", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5127-pf17168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5127-pf17168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/gtaa-6-hairpin-pf16335.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16335", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/gtaa-6-hairpin-pf16335.yaml" } ], "pfam_ids": [ "PF16335", "PF17168" ], "protein_name": "Probable glutaminase ARB_05535/05536", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSWVLLAWAVACSALAGASRLTPSVLPLVVRNPYLSTWLADARHEPWSSWPIFWTGQHMGMSIMAHVPSTGNTYPLLGRPHDSLGPNNPNNGCFLGSKYDASTTNMTYLIQPEGKHLAGESVKITITFLSPITPTSTLRQSIPAGYVTIRVEGNMNVNIYMDMNGEWVTGDRGSSLIWKMDNIVDTGKGESLYQWQVSRKTEQLFTEFQDRAEWGMLHFLAPQGVRYESGTSMLLRTRFARTGVLQNRNDERFRTVMDEEPVFAYSKAFNLNGTDDEPNIEAIHDEVTFTIAHTQDPVVQFASARGLTLMKPLWESYFPDVKSLLNFHYFDLDKARILAHRYSNQLARDAQLSAAEDYVDVVALTARQVLGATSFSGTSDNPLLFLKEISSNGNCQTVDVIFPSFPFFLYTNPRWLAYLLEPLIEHMLSGQYPNNYSMHDLGAHFPNMTGHPDGKDEYMPVEECGNMLIMGLSIVNSLRFPPEANTTAPWYPGTLEARDAEPDVVGLFPLRDLQTVGGIDRLDSVWGVGPDATNLARKWVEKSYRLWRQWTGYLVEFSLEPHNQLSTDDFAGWLALQTNLALKGIVGINAMSEMSRFVGKTDDYKYFKNISDTYITKWEGFGFSRDGTHAKLSYDWYGSWTTLYNMFADALLCFHLDGTEYDTHPRTLDDQEPIAPPPGKTGFIPRRVYEKQSKWYANVRQKYGLPLDSRHLYTKSDWEFFSMAVSSPSVRSEILQSYAKWVNETSTDHPLTDLYKTEEDGGYPGPNFFARPVVGGHFAFLALEKACNGKATDGLKFLDDKDNNSPEDIPEDNVHDGDADNEDSQSPIQDSDGSEVKAGDQAQFPIQDMDDSQMTIVNEND", "sequence_length": 862, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fbb6fdc4dc2fd70797fb1f5a61201fae2f566637dea683e3aebeea123b12ee15", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/D4AMT2.json", "taxon_id": "663331", "uniprot_accession": "D4AMT2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus oryzae (strain ATCC 42149 / RIB 40)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5127-pf17168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5127-pf17168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"MMHFLSFCLSVASLVSYAGAASTFSPARPPALPLAVKSPYLSTWLSAGTDGGNGGYLAGQWPTFWFGQVTGWAGQIRVDNSTYTWMGAIPNTPTVNQTSFEYTSTSSVFTMRVGDMVEMKVKFLSPITPDDLRRQSLVFSYLDVDVESIDGKAHDIQVYADISAEWASGDRNAIAQWDYGVTDDGVAYHKVYRQTQLLFSENTEQAEWGEWYWATDDQDGLSYQSGPDVDVRGAFAKNGKLANSDDKNYRAISTNWPVFAFSRDLGSVKTSAGTLFSIGLAQDSAIQYSGKPEGTTVMPSLWKSYFSTATAALEFFHHDYAAAAALSKDLDDRISKDSIDAAGQDYLTITSLTVRQVFAAVQLTGTPEDPYIFMKEISSNGNMNTVDVIFPAHPIFLYTNPELLKLILKPIYEIQENGKYPNTYAMHDIGTHYPNATGHPKGDDEKMPLEECGNMVIMALAYAQKAKDNDYLSQHYPILNKWTTYLVEDSIYPANQISTDDFAGSLANQTNLALKGIIGIQAMAVISNTTGHPDDASNHSSIAKDYIARWQTLGVAHDANPPHTTLSYGANETHGLLYNLYADRELGLNLVPQSVYDMQNTFYPTVKEKYGVPLDTRHVYTKADWELFTAAVASESVRDMFHQALATWINETPTNRAFTDLYDTQTGNYPAGITFIARPVMGGAFALLIL", "sequence_length": 690, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7fdeab1d3948943d5150663e7fd94aaa38efd67c425548d1b837bca63b16119a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q2U4L7.json", "taxon_id": "510516", "uniprot_accession": "Q2U4L7", "uniprot_release": "2026_03" } ], "pfam_id": "PF16335", "short_name": "GtaA_6_Hairpin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16339", "short_name": "DUF4969", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16341", "short_name": "DUF4971", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16342", "short_name": "DUF4972", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16343", "short_name": "DUF4973", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16344", "short_name": "FecR_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gh32-bt1760-like-c-pf16346.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16346", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gh32-bt1760-like-c-pf16346.yaml" } ], "pfam_ids": [ "PF00251", "PF16346" ], "protein_name": "Endo-levanase BT_1760", 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"HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/n-sulfoglucosamine-sulfohydrolase-activity-go0016250.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016250", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/n-sulfoglucosamine-sulfohydrolase-activity-go0016250.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/n-sulfoglucosamine-sulfohydrolase-sgsh-sulfamidase-n-sulfoglucosamine--cd16027.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd16027", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/n-sulfoglucosamine-sulfohydrolase-sgsh-sulfamidase-n-sulfoglucosamine--cd16027.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/n-sulphoglucosamine-sulphohydrolase-c-terminal-ipr032506.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR032506", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/n-sulphoglucosamine-sulphohydrolase-c-terminal-ipr032506.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sgsh-c-pf16347.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16347", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sgsh-c-pf16347.yaml" } ], "pfam_ids": [ "PF00884", "PF16347" ], "protein_name": "N-sulphoglucosamine sulphohydrolase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSCPVPACCALLLVLGLCRARPRNALLLLADDGGFESGAYNNSAIATPHLDALARRSLLFRNAFTSVSSCSPSRASLLTGLPQHQNGMYGLHQDVHHFNSFDKVRSLPLLLSQAGVRTGIIGKKHVGPETVYPFDFAYTEENGSVLQVGRNITRIKLLVRKFLQTQDDRPFFLYVAFHDPHRCGHSQPQYGTFCEKFGNGESGMGRIPDWTPQAYDPLDVLVPYFVPNTPAARADLAAQYTTVGRMDQGVGLVLQELRDAGVLNDTLVIFTSDNGIPFPSGRTNLYWPGTAEPLLVSSPEHPKRWGQVSEAYVSLLDLTPTILDWFSIPYPSYAIFGSKTIHLTGRSLLPALEAEPLWATVFGSQSHHEVTMSYPMRSVQHRHFRLVHNLNFKMPFPIDQDFYVSPTFQDLLNRTTAGQPTGWYKDLRHYYYRARWELYDRSRDPHETQNLATDPRFAQLLEMLRDQLAKWQWETHDPWVCAPDGVLEEKLSPQCQPLHNEL", "sequence_length": 502, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "39837e529c63ea9c0da012dd8041055073afdfdd8d3ac589144206bf7d2c6576", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P51688.json", "taxon_id": "9606", "uniprot_accession": "P51688", "uniprot_release": "2026_03" } ], "pfam_id": "PF16347", "short_name": "SGSH_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16349", "short_name": "DUF4978", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16351", "short_name": "DUF4979", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16352", "short_name": "DUF4980", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacter agglomerans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bgal-small-n-pf02929.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02929", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bgal-small-n-pf02929.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lacz-4-pf16353.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16353", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lacz-4-pf16353.yaml" } ], "pfam_ids": [ "PF00703", "PF02836", "PF02837", "PF02929", "PF16353" ], "protein_name": "Beta-galactosidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFTASPMSLSKILARRDWENPGVTQWHRLPAHAPFNSWRDEASARADDNASRKRSLNGDWQFSYYAAPEQVPDSWVTEDCADAVTTPVPSNWQMQGFDTPIYTNDTYPIPVNPPFVPAENPTGCYSLTFEVDEQWLESGQTRIVFDGVNSAFYLWCNGKWMGYSQDSRLPAEFDLSAVLRPGTNRLAVLVLRWCDGSYLEDQDMWRMSGIFRDVSLLHKPHTHIADYHAVTELNADYDRAKLQVEVALAGEQFADCEVAVTLWRDGLSVATVSAKPGSAIIDERGNWAERLNVTLPVKDPALWSAETPELYRLTFALRDGQGEILDVEACDVGFRCVEISNGLLKVNGKPLLIRGVNRHEHHPENGQVMDEATMCRDIELMKQHNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIETHGMVPMSRLADDPRWLPAMSERVTRMVLRDRNHPSIIIWSLGNESGHGANHDALYRWVKTTDPTRPVQYEGGGANTAATDIVCPMYARVDQDQPFEAVPKWSLKKWIGMPDETRPLILCEYAHAMGNSFGGFAKYWQAFRNHPRLQGGFVWDWVDQALTKKDDNGNAFWAYGGDFGDTPNDRQFCLNGLVFPDRTPHPALFEAQRAQQFFTFTLVSTSPLVIDVHSDYLFRQCDNEQLRWNIARDGEVLASGEVALTIAPQQTQRIEIDAPEFAAAAGEIWLNVDIVQTAATAWSPADHRCAWDQWQLPAPLYIAPPVEGTAKPDLKVKEDVLEVSHQSQRWHFDRASGNLTQWWNNGTATLLAPLSDNFTRAPLDNDIGVSEATRIDPNAWVERWKAAGMYNLTPRLLLCEGEQLAQAVTITTLHAWESNGKALFLSRKVWKIDRAGVLHGDVQVQVANDIPQPARIGLSCQLAQTPQTASWLGLGPDENYPDRKLAARQGRWTLPLDALHTAYIFPTDNGLRCDTRELTFDTHQMQGDFHFSLSRYSQQQLRDTSHHHLLEAEPGCWLNIDAFHMGVGGDDSWSPSVSPEFILQRREMRYAFSWRQD", "sequence_length": 1028, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0cdbfc1c9765fdc04763adb807eb10f1cec47f8a5c7790dad919e341faec4377", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A3FEW8.json", "taxon_id": "549", "uniprot_accession": "A3FEW8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bgal-small-n-pf02929.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02929", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bgal-small-n-pf02929.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glyco-hydro-2-n-pf02837.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02837", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glyco-hydro-2-n-pf02837.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glyco-hydro-2-pf00703.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00703", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glyco-hydro-2-pf00703.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lacz-4-pf16353.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16353", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lacz-4-pf16353.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/glycosyl-hydrol-f2-1.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00719", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/glycosyl-hydrol-f2-1.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/glycosyl-hydrol-f2-2.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00608", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/glycosyl-hydrol-f2-2.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P00722", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00703", "PF02836", "PF02837", "PF02929", "PF16353" ], "protein_name": "Beta-galactosidase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d192d45958b03c26f677259276df226f5442462bf8c0a20fea4a10f0f426ad39", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTMITDSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWRFAWFPAPEAVPESWLECDLPEADTVVVPSNWQMHGYDAPIYTNVTYPITVNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLPSEFDLSAFLRAGENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISDFHVATRFNDDFSRAVLEAEVQMCGELRDYLRVTVSLWQGETQVASGTAPFGGEIIDERGGYADRVTLRLNVENPKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLILCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGDTPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPESAGQLWLTVRVVQPNATAWSEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQFNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSEATRIDPNAWVERWKAAGHYQAEAALLQCTADTLADAVLITTAHAWQHQGKTLFISRKTYRIDGSGQMAITVDVEVASDTPHPARIGLNCQLAQVAERVNWLGLGPQENYPDRLTAACFDRWDLPLSDMYTPYVFPSENGLRCGTRELNYGPHQWRGDFQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRYHYQLVWCQK", "sequence_length": 1024, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "d192d45958b03c26f677259276df226f5442462bf8c0a20fea4a10f0f426ad39", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P00722.json", "taxon_id": "83333", "uniprot_accession": "P00722", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bgal-small-n-pf02929.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02929", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bgal-small-n-pf02929.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/lacz-4-pf16353.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16353", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/lacz-4-pf16353.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P06864", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00703", "PF02836", "PF02837", "PF02929", "PF16353" ], "protein_name": "Evolved beta-galactosidase subunit alpha", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ea7c167a890b14803acb68f1c9cfb7b49271f1537ee26d951731850a9d4edb74", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNRWENIQLTHENRLAPRAYFFSYDSVAQARTFARETSSLFLPLSGQWNFHFFDHPLQVPEAFTSELMADWGHITVPAMWQMEGHGKLQYTDEGFPFPIDVPFVPSDNPTGAYQRIFTLSDGWQGKQTLIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISAMVKTGDNLLCVRVMQWADSTYVEDQDMWWSAGIFRDVYLVGKHLTHINDFTVRTDFDEAYCDATLSCEVVLENLAASPVVTTLEYTLFDGERVVHSSAIDHLAIEKLTSASFAFTVEQPQQWSAESPYLYHLVMTLKDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYVMLHGVNRHDNDHRKGRAVGMDRVEKDLQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVERIVRHIHAQKNHPSIIIWSLGNESGYGCNIRAMYHAAKALDDTRLVHYEEDRDAEVVDIISTMYTRVPLMNEFGEYPHPKPRIICEYAHAMGNGPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDHGNVWYKFGGDYGDYPNNYNFCLDGLIYSDQTPGPGLKEYKQVIAPVKIHARDLTRGELKVENKLWFTTLDDYTLHAEVRAEGETLATQQIKLRDVAPNSEAPLQITLPQLDAREAFLNITVTKDSRTRYSEAGHPIATYQFPLKENTAQPVPFAPNNARPLTLEDDRLSCTVRGYNFAITFSKMSGKPTSWQVNGESLLTREPKINFFKPMIDNHKQEYEGLWQPNHLQIMQEHLRDFAVEQSDGEVLIISRTVIAPPVFDFGMRCTYIWRIAADGQVNVALSGERYGDYPHIIPCIGFTMGINGEYDQVAYYGRGPGENYADSQQANIIDIWRSTVDAMFENYPFPQNNGNRQHVRWTALTNRHGNGLLVVPQRPINFSAWHYTQENIHAAQHCNELQRSDDITLNLDHQLLGLGSNSWGSEVLDSWRVWFRDFSYGFTLLPVSGGEATAQSLASYEFGAGFFSTNLHSENKQ", "sequence_length": 1030, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ea7c167a890b14803acb68f1c9cfb7b49271f1537ee26d951731850a9d4edb74", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P06864.json", "taxon_id": "83333", "uniprot_accession": "P06864", "uniprot_release": "2026_03" } ], "pfam_id": "PF16353", "short_name": "LacZ_4", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / BCRC 10623 / CCUG 4943 / NCTC 11153)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4982-pf16355.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16355", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4982-pf16355.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glyco-hydro2-c5-pf18565.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18565", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glyco-hydro2-c5-pf18565.yaml" } ], "pfam_ids": [ "PF00703", "PF02836", "PF02837", "PF16355", "PF18565" ], "protein_name": "Beta-galactosidase BoGH2A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMIGKLKYLMLGGCLILGSCLALGGCLMLLGACSSSSLVSPRERSDFNADWRFHLGDGLQAAQPGFADNDWRVLDLPHDWAIEGDFSQENPSGTGGGALPGGVGWYRKTFSVDKADAGKIFRIEFDGVYMNSEVFINGVSLGVRPYGYISFSYDLTPYLKWDEPNVLAVRVDNAEQPNSRWYSGCGIYRNVWLSKTGPIHVGGWGTYVTTSSVDEKQAVLNLATTLVNESDTNENVTVCSSLQDAEGREVAETRSSGEAEAGKEVVFTQQLTVKQPQLWDIDTPYLYTLVTKVMRNEECMDRYTTPVGIRTFSLDARKGFTLNGRQTKINGVCMHHDLGCLGAAVNTRAIERHLQILKEMGCNGIRCSHNPPAPELLDLCDRMGFIVMDEAFDMWRKKKTAHDYARYFNEWHERDLNDFILRDRNHPSVFMWSIGNEVLEQWSDAKADTLSLEEANLILNFGHSSEMLAKEGEESVNSLLTKKLVSFVKGLDPTRPVTAGCNEPNSGNHLFRSGVLDVIGYNYHNKDIPNVPANFPDKPFIITESNSALMTRGYYRMPSDRMFIWPKRWDKSFADSTFACSSYENCHVPWGNTHEESLKLVRDNDFISGQYVWTGFDYIGEPTPYGWPARSSYFGIVDLAGFPKDVYYLYQSEWTDKQVLHLFPHWNWTPGQEIDMWCYYNQADEVELFVNGKSQGVKRKDLDNLHVAWRVKFEPGTVKVIARESGKVVAEKEICTAGKPAEIRLTPDRSILTADGKDLCFVTVEVLDEKGNLCPDADNLVNFTVQGNGFIAGVDNGNPVSMERFKDEKRKAFYGKCLVVIQNDGKPGKAKLTATSEGLRQAVLKISAEEL", "sequence_length": 851, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b206340cef34d8ab62b23b0c71afca3ff4dcb1637fb07bd10e7dceef8634168c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A7LXS9.json", "taxon_id": "411476", "uniprot_accession": "A7LXS9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4982-pf16355.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16355", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4982-pf16355.yaml" } ], "pfam_ids": [ "PF00703", "PF02836", "PF02837", "PF16355" ], "protein_name": "Beta-glucuronidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKQQKCNYFPSLWWRGREKGLSTFLFLLLFSISLHAQRQDILLNNNWNFRFSHQVQGDTRRVDLPHTWNAQDALAGKIDYKRGIGNYEKALYIRPEWKGKRLFLRFDGVNSIADVFINRKHIGEHRGGYGAFIFEITDLVKYGEKNSVLVRANNGEQLDIMPLVGDFNFYGGIYRDVHLLITDETCISPLDYASPGVYLVQEVVSPQEAKVCAKVNLSNRAADGTAELQVLVTDGTKVICKESRNVSLKQGADILEQLPLLIQKPRLWNGCEDPFMYQVSISLHKDGKQIDSVTQPLGLRYYHTDPDKGFFLNGKHLPLHGVCRHQDRAEVGNALRPQHHEEDVALMREMGVNAIRLAHYPQATYMYDLMDKHGIVTWAEIPFVGPGGYADKGFVDQASFRENGKQQLIELIRQHYNHPSICFWGLFNELKEVGDNPVEYVKELNALAKQEDPTRPTTSASNQDGNLNFITENIAWNRYDGWYGSTPKTLATFLDRTHKKHPELRIGISEYGAGASIYHQQDSLKQPSASGWWHPENWQTYYHMENWKIIAERPFVWGTFVWNMFDFGAAHRTEGDRPGINDKGLVTFDRKVRKDAFYFYKANWNKQEPMIYLAEKRCRLRYQPEQTFMAFTTAPEAELFVNGVSCGKQKADTYSTVVWKNVKLTSGENIIRVTTPGKKPLTDEVTVEYKEDRPL", "sequence_length": 695, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "27640a60e9047f10185055c3662d8d9677a1a94c4b15fd26623c775836067cbb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5LIC7.json", "taxon_id": "272559", "uniprot_accession": "Q5LIC7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4982-pf16355.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF16355", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4982-pf16355.yaml" } ], "pfam_ids": [ "PF00703", "PF02836", "PF02837", "PF13287", "PF16355" ], "protein_name": "Putative beta-glucuronidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHQKIVECIPLWSRNLNSNVKGMRGEGIACLLIVLCSIIYRTEAQRIETNFNNNWHFILKDSPDFSKENLDDSSWELLNVPHDWSFEKGVRKGGDQGQGGGYHDGGIGWYRKTFSFSKASLSKTTYINFDGVYMNSEVWINGNRLGKRPYGYISFRYDISKYLKVGKNTIAVRVDNGLEPSARWYHSCGIYAPVKLVEVNPTHFKPNTIFIKTPSIEKQQGVVSIDAEIKGAFKGLKYNVELLTANGKVIATHSEKLASAQPSVQLEVKPPKLWSPESPNLYKAKTQILDGKKVIDEKTTTFGFRTVAWKTETGFWLNGENVKLKGVCEHWEGGPVGGAWTKPMLRWKLQSLKDMGINAIRPSHNSTPPMFYDICDEIGLLVMDEIFDGWHKKAPEDYGKQAFDEWWQADVKEWITRDRNHPSIFVWSLGNETHSDVAPEMVAFGKNLDPTRLFTSGAGNPEDMDIQGVNGGSETKSFIENNKLTKPFISTEAPHTWQTRGYYRTQTWWRDNELSGTYELPNLTEKEVFFYEGINPKNWKNRKQRFNSSYDNATVRVSARKYWEVMRDTPWHSGHFRWTGFDYYGEAGLVHGGLPFNLFMGGALDVAGFKKDLYYFYQSQWTEKPMIHMLPHWTHPRMKKGTVIPVWVYANADEVELFLNGISLGKDKPGTVWNEMQCEWLVPYEEGTLEAVGYINGKVVNRTSFSTAQQPSKLKTSILKLDAEGSFTDSFIVTSESLDTAGHLYPYGENKVYYHIQGDVKKISMENGNPIDPTSRTKSDFRALFFGKTRTFLRALPEPKEAAVVTAAILGDKALYTSNLITIDAQHIQLLGKSKTSDLEIRYTTNGENPETHGKLYKDAFMVEDDTTVKAIVKQNGKTVLSMEETFGKNEGLFWGDEHSADMWIGRGVDISAEEGVLTGAAKPSREAHRFKGSGFVDFKGGEGSITWYQENDGEPGDYSIRFRYMHNNHGKLHPMKLYVNDEYVRTIEFEPTGGWEKEWKFVPTIIVLQSGANNIKLETTGESGPFIDELFID", "sequence_length": 1034, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "18814f334a10703a2b17ffad210bfc357e0c8b9938111c1977169badcfe5f676", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/T2KM09.json", "taxon_id": "1347342", "uniprot_accession": "T2KM09", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glyco-hydro2-c5-pf18565.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18565", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glyco-hydro2-c5-pf18565.yaml" } ], "pfam_ids": [ "PF00703", "PF02836", "PF02837", "PF16355", "PF18565" ], "protein_name": "Beta-glucuronidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTILCSCAQQQQQQQQDTEVITSSERTTYNFNVDWKFIKSNPKQAQDINYNDATWETISCPHTFNDVDTFDDLSHGHHDGEDNQWRGTVWYRKHFKLPKDDKGKKVFIEFESVRQIADVYINGVHLGQNQTGFIPFGFDLTPHLKFGEENIIAVKVNNDRGDHFRENFPLVWNHEHWHPTHGGIYRNVFLHTMDPLHITLPLYDNLETVGTYVYAENISEKSADITVETEIQNEHAENKNITLVTQIVDNDGAVVAHSNKNVAIPSGQKMKVTTVTNIQNPQLWYTRYPYMYKVVSAIKESNKVIDTYESPLGIRNFDFNKDSGFWINGEQIKLHGWGQKPTNAWAGLGAALPDWLRDFTFKLMDEAGGNFIRWGHCAASPAEVDMGDKYGFVTLMPGVSGESEDEGETWDIRYKAFKDLIVYYRNHPSIFIWEGGNWAESEAHYKEILEAIKTFDPKGKRLMGNRRADVKNDSEGYVSIEIGTEGWEREYPDLPIIESEYNREEAPRRIWDKNSPDDNFYNHPNISKNTYKLSSEEFAVRQADHWWNKMGKKAYHSGGANWIFSDGPHGGRCPTEVTRASGEVDAVRLPKEAFYALKAMWRPEPQVHIVGHWNYEVGTKKTMYVMSNCASVKLYVNDKLVGTNSNPENGYVFKFDNVAWESGKIKAEGFIDDALKTTQTKETTGEPAALKLTSITGPEGWLADGSDVALIDVEVVDAQGRRCPLAKGRVDFTISGPAIWRGGYNSGKPNSTNNLFLDIEAGINRVAVRSVLESGTVTIMAKKPGFKDVSVTLKSLPIDFNNGLTTTLPQVYTNVLTKEPLPEHIPEMPEYIPGVKNRSELFRKFSYTGDGKAMLRTNMHWGKKAYTDLEYNYTVLPRYLNESEYVRTPNSDNRYWARDQLQFIAGKKMHIYVLHDDTVPRPEFLLRDYEDTGDNVNVVGASMSVFHRVAEEGESIIMAGNSDGDAPENCRMYTVMVKEFK", "sequence_length": 981, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "29114232a8b2a6dd609570ccf52ef5cefca5c3f599090fc446dc56a867a4bf10", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/T2KN75.json", "taxon_id": "1347342", "uniprot_accession": "T2KN75", "uniprot_release": "2026_03" } ], "pfam_id": "PF16355", "short_name": "DUF4982", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16356", "short_name": "DUF4983", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16372", "short_name": "DUF4984", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16373", "short_name": "DUF4985", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16375", "short_name": "DUF4986", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16377", "short_name": "DUF4987", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16378", "short_name": "DUF4988", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16379", "short_name": "DUF4989", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16380", "short_name": "BT_4170-like_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16383", "short_name": "DUF4992", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16386", "short_name": "DUF4995", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16387", "short_name": "DUF4996", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16389", "short_name": "DUF4998", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16390", "short_name": "DUF4999", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF16391", 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"5332408a2cc01b8d6216de1b092fa1db41512d32fbc145ad89bef4a93149df14", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSDRDQIEPVTNALDAESDSSDDFGNFSDASVENDLYNQNSTLTTSSESVVDNCLNKILPKGEFDLEEETIKNDCFKLSKLIEDERPHVIYEQLVQLDPVLQPFIWNKSHIRRNLLHILRLSDNNGSEGVGTKREEEPLNDELFKRICDAVEKNEQTATGLFLRDNFKIDYTPPMTLKSLQKEEEREQEQHIPQLLMADFTSMDEESLRQYHDTLCQSIDFLVSKSRSLKKQQRDLLKDKTTFENVVTNLTGHTQRLQRDEIALYNKKRNKKKRFSWVGY", "sequence_length": 280, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "5332408a2cc01b8d6216de1b092fa1db41512d32fbc145ad89bef4a93149df14", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32788.json", "taxon_id": "559292", "uniprot_accession": "P32788", "uniprot_release": "2026_03" } ], "pfam_id": "PF17104", "short_name": "YBL010C_LAA2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17115", "short_name": "Toast_rack_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17116", "short_name": "T9SS_plug_1st", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17117", "short_name": "DUF5104", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029051", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4352-ipr029051.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5105-ipr031343.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR031343", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5105-ipr031343.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5105-pf17118.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17118", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5105-pf17118.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR029050", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/immunoprotective-extracellular-immunoglobulin-like-domain-superfamily-ipr029050.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:2.60.40.1240", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/2-60-40-1240-2-60-40-1240.yaml" } ], "pfam_ids": [ "PF11611", "PF17118" ], "protein_name": "Uncharacterized lipoprotein YcdA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFQKKTYAVFLILLLMMFTAACSGSKTSAEKKESETEKSSDIAQVKIKDVSYTLPSKYDKSTSDDQLVLKVNVAVKNTGKDPLNVDSMDFTLYQGDTKMSDTDPEDYSEKLQGSTINADKSVEGNLFFVVDKGKQYELNYTPESYGDKKPKSVTFKIDGKDKKILATADKLQDSAKALSAYVDVLLFGKDNADFEKITGANKNEIVNDFNESAKDGYLSASGLSSTYADSKALDNIVNGIKEGLSKNSSIQAKTTSISKDEAIVEATVKPVDASSLSDRIEDKVKDYYSKNSSASYEEAVKYALQVYPEEFKKLGPASSEKTVEVKMKKNDIDQWQLDMDDYRAAELVEAFIKE", "sequence_length": 354, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "61229bd5efecd27dc40eebb7f6f2f44af4cb3156f001bfca95971b307dc5bd6a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34538.json", "taxon_id": "224308", "uniprot_accession": "O34538", "uniprot_release": "2026_03" } ], "pfam_id": "PF17118", "short_name": "DUF5105", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17127", "short_name": "DUF5106", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5107-ipr033396.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR033396", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5107-ipr033396.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5107-pf17128.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17128", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5107-pf17128.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P76585", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF13432", "PF17128", "PF29285" ], "protein_name": "Uncharacterized protein YphG", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "2d3541f5c7872a34400825f09bc73342a95819b6cb9a50d70628afd3f057d18d", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTPVKVWQERVEIPTYETGPQDIHPMFLENRVYQGSSGAVYPYGVTDTLSEQKTLKSWQAVWLENDYIKVMILPELGGRVHRAWDKVKQRDFVYHNEVIKPALVGLLGPWISGGIEFNWPQHHRPTTFMPVDFTLEAHEDGAQTVWVGETEPMHGLQVMTGFTLRPDRAALEIASRVYNGNATPRHFLWWANPAVKGGEGHQSVFPPDVTAVFDHGKRAVSAFPIATGTYYKVDYSAGVDISRYKNVPVPTSYMAEKSQYDFVGAWCHDEDGGLLHVANHHIAPGKKQWSWGHSEFGQAWDKSLTDNNGPYIELMTGIFADNQPDFTWLDAYEEKRFEQYFLPYHSLGMVQNASRDAVIKLQRSKRGIEWGLYAISPLNGYRLAIREIGKCNALLDDAVALMPATAIQGVLHGINPERLTIELSDADGNIVLSYQEHQPQALPLPDVAKAPLAAQDITSTDEAWFIGQHLEQYHHASRSPFDYYLRGVALDPLDYRCNLALAMLEYNRADFPQAVAYATQALKRAHALNKNPQCGQASLIRASAYERQGQYQQAEEDFWRAVWSGNSKAGGYYGLARLAARNGNFDAGLDFCQQSLRACPTNQEVLCLHNLLLVLSGRQDNARVQREKLLRDYPLNATLWWLNWFDGRSESALAQWRGLCQGRDVNALMTAGQLINWGMPTLAAEMLNALDCQRTLPLYLQASLLPKAERGELVAKAIDVFPQFVRFPNTLEEVAALESIEECWFARHLLACFYYNKRSYNKAIAFWQRCVEMSPEFADGWRGLAIHAWNKQHDYELAARYLDNAYQLAPQDARLLFERDLLDKLSGATPEKRLARLENNLEIALKRDDMTAELLNLWHLTGQADKAADILATRKFHPWEGGEGKVTSQFILNQLLRAWQHLDARQPQQACELLHAALHYPENLSEGRLPGQTDNDIWFWQAICANAQGDETEATRCLRLAATGDRTINIHSYYNDQPVDYLFWQGMALRLLGEQQTAQQLFSEMKQWAQEMAKTSIEADFFAVSQPDLLSLYGDLQQQHKEKCLMVAMLASAGLGEVAQYESARAELTAINPAWPKAALFTTVMPFIFNRVH", "sequence_length": 1093, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2d3541f5c7872a34400825f09bc73342a95819b6cb9a50d70628afd3f057d18d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76585.json", "taxon_id": "83333", "uniprot_accession": "P76585", "uniprot_release": "2026_03" } ], "pfam_id": "PF17128", "short_name": "DUF5107", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17133", "short_name": "DUF5108", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / BCRC 10623 / CCUG 4943 / NCTC 11153)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5110-pf17137.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17137", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5110-pf17137.yaml" } ], "pfam_ids": [ "PF01055", "PF13802", "PF17137", "PF21365" ], "protein_name": "Alpha-xylosidase BoGH31A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIMNMKNIFYCLLPGLLLGACSNKVYEKTGDSVIVKVQHKETGGPRLVRLQVMGDKLIHVSATADSKFADPQSLIVVPQKKQTSFAVVQNGDTITVSTEEVKASVLASTGEVWFTDKNGELILQENKGGGKTFTPIEVEGTKGYTVCQVFESPEDEAFYGLGQHQADEFNYKGKNEELFQYNTKVSVPFVVSNKNYGILLDSYSFCRFGNPNDYSQLNRIFKLYDKTGQEGALTGTYVPKKGETLVRREDSIYFENLKTIENLPKKLPLMGAKVTYEGEIEPAQTGEFKFILYYAGYVKVYLNNEPVVPERWRTAWNPNSYKFAAHLEAGKRVPLKIEWQPDGGQSYCGLRALTPVNPEEQGKQSWWSEMTKQLDYYFMAGENMDDVISGYRSLTGKSPVMPKWAMGFWQSREKYNTQEEMLGALKGFRDRKIPLDNIVLDWNHWPENAWGSHEFDKARFPDPKAMVDSIHAMHARMMISVWPKFYVTTEHFKEFDENGWMYQQSVKDSLKDWVGPGYHYGFYDAYDPDARKLFWKQMYEHYYPLGIDAWWMDASEPNVRDCTDLEYRKALCGPTALGSSTEFFNAYALMNAEAIYDGQRGVDNNKRVFLLTRSGFAGLQRYSTATWSGDIGTRWEDMKAQISAGLNFAMSGIPYWTMDIGGFCVENRYVAGQKQWNATKTENADYKEWRELNTRWYQFGAFVPLYRAHGQYPFREIWEIAPEGHPAYQSVVYYTKLRYNMMPYIYSLAGMTWFDDYTIMRPLVMDFTADAEVNDIGDQFMFGPSFMVSPVYRYGDRSREIYFPQAEGWYDFYSGKFQAGGERKVIEAPYERIPLYVRAGAIIPFGDDIQYTDEKPAEHIRLYIYQGADGEFTLYEDEGVNYNYEQGMYAMIPMKYDEATKTLVIGERQGEFPGMLKERTFTVVTVNKEKAQPFDLNAKGVTVKYNGSEQTLKL", "sequence_length": 954, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "091163964e2d35eb7c5fdd99420013bfe228107da5575d936c9472891e63b28a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A7LXT0.json", "taxon_id": "411476", "uniprot_accession": "A7LXT0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5110-pf17137.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17137", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5110-pf17137.yaml" } ], "pfam_ids": [ "PF01055", "PF13802", "PF17137", "PF21365" ], "protein_name": "Glucosidase 2 subunit alpha", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLLKWLVCQLVFFTAFSHAFTDYLLKKCAQSGFCHRNRVYAENIAKSHHCYYKVDAESIAHDPLENVLHATIIKTIPRLEGDDIAVQFPFSLSFLQDHSVRFTINEKERMPTNSSGLLISSQRFNETWKYAFDKKFQEEANRTSIPQFHFLKQKQTVNSFWSKISSFLSLSNSTADTFHLRNGDVSVEIFAEPFQLKVYWQNALKLIVNEQNFLNIEHHRTKQENFAHVLPEETTFNMFKDNFLYSKHDSMPLGPESVALDFSFMGSTNVYGIPEHATSLRLMDTSGGKEPYRLFNVDVFEYNIGTSQPMYGSIPFMFSSSSTSIFWVNAADTWVDIKYDTSKNKTMTHWISENGVIDVVMSLGPDIPTIIDKFTDLTGRPFLPPISSIGYHQCRWNYNDEMDVLTVDSQMDAHMIPYDFIWLDLEYTNDKKYFTWKQHSFPNPKRLLSKLKKLGRNLVVLIDPHLKKDYEISDRVINENVAVKDHNGNDYVGHCWPGNSIWIDTISKYGQKIWKSFFERFMDLPADLTNLFIWNDMNEPSIFDGPETTAPKDLIHDNYIEERSVHNIYGLSVHEATYDAIKSIYSPSDKRPFLLTRAFFAGSQRTAATWTGDNVANWDYLKISIPMVLSNNIAGMPFIGADIAGFAEDPTPELIARWYQAGLWYPFFRAHAHIDTKRREPYLFNEPLKSIVRDIIQLRYFLLPTLYTMFHKSSVTGFPIMNPMFIEHPEFAELYHIDNQFYWSNSGLLVKPVTEPGQSETEMVFPPGIFYEFASLHSFINNGTDLIEKNISAPLDKIPLFIEGGHIITMKDKYRRSSMLMKNDPYVIVIAPDTEGRAVGDLYVDDGETFGYQRGEYVETQFIFENNTLKNVRSHIPENLTGIHHNTLRNTNIEKIIIAKNNLQHNITLKDSIKVKKNGEESSLPTRSSYENDNKITILNLSLDITEDWEVIF", "sequence_length": 954, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c8d1ae23c2a880c8f09c07c2fe5d3d878ccb795961f42e8e3eb5bc96af6a1ed7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38138.json", "taxon_id": "559292", "uniprot_accession": "P38138", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5110-pf17137.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17137", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5110-pf17137.yaml" } ], "pfam_ids": [ "PF01055", "PF13802", "PF17137", "PF21365" ], "protein_name": "Glucosidase 2 subunit alpha", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRYHGICWFIFQAAIIFAIFGSCQGAFRHQFKTAEQDGFARRNRDLAKFQKENLNWNGLFQLNSISYNSGVVSGVFEQQSENGENQHLFPFSISFLKNDVVRFQMDEKSRLEGTVEYEKNILTKRRFDASTELGFNERAEVYGKDAHLLEQTSTSLTIRYGSHGRFTVIVTFSPFKVEFQRDGEPQVVLNERHLLNMEYYRPKSSRTPEQEANGMWDETFDNFHDSKPKGPESVGLDIKFVDYGNVYGVPEHTSSLSLKETNNSDAGYTEPYRLYNVDLFEYEVDSPMSQYGAIPFMQAHKPNSDVAVFWSNAAATWIDVEKESGPSPHSQSTSTHWYSESGTLDLFIFLGPKASDVYESYSALVGRPLLPPLFSIGYHQCRWNYVSEEDVLNVDAKFDEVDMPYDTIWLDIEYASKRRYFTWDKATFPNPKAMLEKLDSKSRKLIVILDPHIKNDPNYFVSKELIDYNYAVKDKSGVDNYNADCWPGNSVWVDFFNPEAQAWWGSLYEFDRFESDKNLWIWNDMNEPSVFRGPETSMHRDAIHYGGWEHRDIHNIYGHKCINGTYNGLIKRGEGAVRPFILTRSFFAGTSALAANWIGDTMTTWEHLRGSIPTVLTNGISGMAFSGADVAGFFGNPDAELFVRWYETAIFYPFFRAHAHIDTKRREPWLYGEPYTSLVRELLRIRYRLLPTWYTAFYNSHTHGFPILYPQFLMHPEDEEGFAIDDQFYVGDSGLLVKPVTHPSIDKITIYLADDEVYFDLHDHTEYAGKGHQVVPAPLGRVPVLLRGGNILITRERIRRAAELTRNDPFTLTIAVSKIGKNASGFLYLDDGVTFNYKKGEYLIRHFSYENGILTMKDSHSNPPVSPKYSSSQKHLKVERINIYGEQTRKSIKIRKIIDSEVTEWDVSVDDSGCIRNPQLFLV", "sequence_length": 923, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0909df5e43dddc619827a7db2ca7d68a21c89a1e90cb1d7d6366c23895f91deb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9US55.json", "taxon_id": "284812", "uniprot_accession": "Q9US55", "uniprot_release": "2026_03" } ], "pfam_id": "PF17137", "short_name": "DUF5110", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17138", "short_name": "DUF5111", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17139", "short_name": "DUF5112", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17140", "short_name": "DUF5113", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17141", "short_name": "DUF5114", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm-1st-susf-pf26120.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26120", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm-1st-susf-pf26120.yaml" } ], "pfam_ids": [ "PF16411", "PF17142", "PF26120" ], "protein_name": "Outer membrane protein SusF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKHLIYTGMFLAAIGFSACNEDFKDWADPQSNPQEESAGQLTATFTAGKDASIVMDAATADSVEIAKLSSTTAEEGSKIAVNSLTLNENHTIPFSMTEDHVFKVALAQLDSVTQEAYKSRASVVRELKISINASAVTPSGEGIQLVGNEVSITLQPATTPAVDPDGYYIVGDFTGWDGNSAQQMKKDALDENLYILEAEIESTSNFKIFPASAINGNDIDWTKALGSSVDGDDSGDNFVSWTNAGAINTALDGKIKISFDAFNYRFTVKDNSAPTELYMTGSAYNWGTPAGDPNAWKALVPVNGTKGTFWGIFYFAANDQVKFAPQANWGNDFGFVDAISQESKDLAGLSDEGGNLKVGIAGWYLVYVSVIGDDKVIEFEKPNVYLMGDTSYNGWDAQLVEQDLFTVPGTADGEFVSPAFLKDGAVRICVNPKAVSAGDWWKTEFIIFDGQIAYRGNGGDQAAVQGKTGQKVYLNFGNGTGRIE", "sequence_length": 485, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "62e4f09ed5ecac5c29419188e0dec044aa7396fdcf77a07f8fbabc256685b735", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G8JZS6.json", "taxon_id": "226186", "uniprot_accession": "G8JZS6", "uniprot_release": "2026_03" } ], "pfam_id": "PF17142", "short_name": "SusF_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / BCRC 10623 / CCUG 4943 / NCTC 11153)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5119-pf17145.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17145", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5119-pf17145.yaml" } ], "pfam_ids": [ "PF17145" ], "protein_name": "Putative fimbrium anchoring subunit Fim4B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNTRYGFLVLLSSLLMLTGCSRRDILDDYPVSGVDIKLDWDGVTDQLPEGVRVIFYPKNGDGRKVDKYLSVRGGEMKVPPGRYSVVVYNYNTESIRIRGEESYETIEAYTGNCNGLGIEGTEKMVWSPDSLYVLNIDELKIEKSEEVLRLDWKLESVVKKYSFAVEAKGLEYVATVVGSIDGLSDCYCIGKGRGVCSSQPIYFEVKKGDNKVTAFFTAFKQVKEMTMPTRMSTSERETSSEKGAIILILKFIKTDNTVQEATIDVTEIIGTLENAGTGEDGKPTPPPEIELPPDDKIEVDKPETPPNPDGGGGMGGNVDGWGPEDNVELPVN", "sequence_length": 333, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "42ee31ee7f12c66942beda3bc0cd682ad5969927ff4006712c4878eb22908dfa", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A7LXW1.json", "taxon_id": "411476", "uniprot_accession": "A7LXW1", "uniprot_release": "2026_03" } ], "pfam_id": "PF17145", "short_name": "DUF5119", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17148", "short_name": "DUF5117", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17160", "short_name": "DUF5124", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17161", "short_name": "DUF5123", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17162", "short_name": "DUF5118", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17163", "short_name": "DUF5125", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17164", "short_name": "DUF5122", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17165", "short_name": "DUF5121", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17166", "short_name": "DUF5126", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5127-pf17168.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5127-pf17168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/gtaa-6-hairpin-pf16335.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16335", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/gtaa-6-hairpin-pf16335.yaml" } ], "pfam_ids": [ "PF16335", "PF17168" ], "protein_name": "Probable glutaminase ARB_05535/05536", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSWVLLAWAVACSALAGASRLTPSVLPLVVRNPYLSTWLADARHEPWSSWPIFWTGQHMGMSIMAHVPSTGNTYPLLGRPHDSLGPNNPNNGCFLGSKYDASTTNMTYLIQPEGKHLAGESVKITITFLSPITPTSTLRQSIPAGYVTIRVEGNMNVNIYMDMNGEWVTGDRGSSLIWKMDNIVDTGKGESLYQWQVSRKTEQLFTEFQDRAEWGMLHFLAPQGVRYESGTSMLLRTRFARTGVLQNRNDERFRTVMDEEPVFAYSKAFNLNGTDDEPNIEAIHDEVTFTIAHTQDPVVQFASARGLTLMKPLWESYFPDVKSLLNFHYFDLDKARILAHRYSNQLARDAQLSAAEDYVDVVALTARQVLGATSFSGTSDNPLLFLKEISSNGNCQTVDVIFPSFPFFLYTNPRWLAYLLEPLIEHMLSGQYPNNYSMHDLGAHFPNMTGHPDGKDEYMPVEECGNMLIMGLSIVNSLRFPPEANTTAPWYPGTLEARDAEPDVVGLFPLRDLQTVGGIDRLDSVWGVGPDATNLARKWVEKSYRLWRQWTGYLVEFSLEPHNQLSTDDFAGWLALQTNLALKGIVGINAMSEMSRFVGKTDDYKYFKNISDTYITKWEGFGFSRDGTHAKLSYDWYGSWTTLYNMFADALLCFHLDGTEYDTHPRTLDDQEPIAPPPGKTGFIPRRVYEKQSKWYANVRQKYGLPLDSRHLYTKSDWEFFSMAVSSPSVRSEILQSYAKWVNETSTDHPLTDLYKTEEDGGYPGPNFFARPVVGGHFAFLALEKACNGKATDGLKFLDDKDNNSPEDIPEDNVHDGDADNEDSQSPIQDSDGSEVKAGDQAQFPIQDMDDSQMTIVNEND", "sequence_length": 862, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fbb6fdc4dc2fd70797fb1f5a61201fae2f566637dea683e3aebeea123b12ee15", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/D4AMT2.json", "taxon_id": "663331", "uniprot_accession": "D4AMT2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus oryzae (strain ATCC 42149 / RIB 40)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5127-pf17168.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5127-pf17168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/gtaa-6-hairpin-pf16335.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16335", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/gtaa-6-hairpin-pf16335.yaml" } ], "pfam_ids": [ "PF16335", "PF17168" ], "protein_name": "Glutaminase A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMHFLSFCLSVASLVSYAGAASTFSPARPPALPLAVKSPYLSTWLSAGTDGGNGGYLAGQWPTFWFGQVTGWAGQIRVDNSTYTWMGAIPNTPTVNQTSFEYTSTSSVFTMRVGDMVEMKVKFLSPITPDDLRRQSLVFSYLDVDVESIDGKAHDIQVYADISAEWASGDRNAIAQWDYGVTDDGVAYHKVYRQTQLLFSENTEQAEWGEWYWATDDQDGLSYQSGPDVDVRGAFAKNGKLANSDDKNYRAISTNWPVFAFSRDLGSVKTSAGTLFSIGLAQDSAIQYSGKPEGTTVMPSLWKSYFSTATAALEFFHHDYAAAAALSKDLDDRISKDSIDAAGQDYLTITSLTVRQVFAAVQLTGTPEDPYIFMKEISSNGNMNTVDVIFPAHPIFLYTNPELLKLILKPIYEIQENGKYPNTYAMHDIGTHYPNATGHPKGDDEKMPLEECGNMVIMALAYAQKAKDNDYLSQHYPILNKWTTYLVEDSIYPANQISTDDFAGSLANQTNLALKGIIGIQAMAVISNTTGHPDDASNHSSIAKDYIARWQTLGVAHDANPPHTTLSYGANETHGLLYNLYADRELGLNLVPQSVYDMQNTFYPTVKEKYGVPLDTRHVYTKADWELFTAAVASESVRDMFHQALATWINETPTNRAFTDLYDTQTGNYPAGITFIARPVMGGAFALLIL", "sequence_length": 690, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7fdeab1d3948943d5150663e7fd94aaa38efd67c425548d1b837bca63b16119a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q2U4L7.json", "taxon_id": "510516", "uniprot_accession": "Q2U4L7", "uniprot_release": "2026_03" } ], "pfam_id": "PF17168", "short_name": "DUF5127", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17170", "short_name": "DUF5128", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17173", "short_name": "DUF5129", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5130-pf17174.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5130-pf17174.yaml" } ], "pfam_ids": [ "PF17174" ], "protein_name": "Uncharacterized protein MSMEG_4692/MSMEI_4575", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASGDIATVANAELDLPYGSALTSSGRISAVTEPGELSVHYPFPTMDLVVLDDALKYGSRAAKARFAVYIGPLGADTAATAREILANVPTPENAVLLAVSPDQRAIEVVYGADVKGRGIESAAPLGVSAAAASFKEGNLIDGLISAVRVMSAGVSPA", "sequence_length": 157, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "536bdbbb98757b5983c7f67a325baf5aee1773ee5d780d0b62aeebe8744d0c7f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0R1B5.json", "taxon_id": "246196", "uniprot_accession": "A0R1B5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5130-pf17174.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5130-pf17174.yaml" } ], "pfam_ids": [ "PF17174" ], "protein_name": "Uncharacterized protein MT2543", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTHRSSRLEVGPVARGDVATIEHAELPPGWVLTTSGRISGVTEPGELSVHYPFPIADLVALDDALTYSSRACQVRFAIYLGDLGRDTAARAREILGKVPTPDNAVLLAVSPNQCAIEVVYGSQVRGRGAESAAPLGVAAASSAFEQGELVDGLISAIRVLSAGIAPG", "sequence_length": 167, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a0f28d8e6c76724d4d793af38008b999297d029fccfa922132a34a6589157240", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLA6.json", "taxon_id": "83331", "uniprot_accession": "P9WLA6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5130-pf17174.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5130-pf17174.yaml" } ], "pfam_ids": [ "PF17174" ], "protein_name": "Uncharacterized protein Rv2468c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTHRSSRLEVGPVARGDVATIEHAELPPGWVLTTSGRISGVTEPGELSVHYPFPIADLVALDDALTYSSRACQVRFAIYLGDLGRDTAARAREILGKVPTPDNAVLLAVSPNQCAIEVVYGSQVRGRGAESAAPLGVAAASSAFEQGELVDGLISAIRVLSAGIAPG", "sequence_length": 167, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a0f28d8e6c76724d4d793af38008b999297d029fccfa922132a34a6589157240", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WLA7.json", "taxon_id": "83332", "uniprot_accession": "P9WLA7", "uniprot_release": "2026_03" } ], "pfam_id": "PF17174", "short_name": "DUF5130", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17195", "short_name": "DUF5132", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17196", "short_name": "DUF5133", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5134-pf17197.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17197", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5134-pf17197.yaml" } ], "pfam_ids": [ "PF17197" ], "protein_name": "Uncharacterized protein Mb0995", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARVPTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSCTEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQEATQSRLPGSIGQAMMAAGMAMLFFAMLFPV", "sequence_length": 210, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a186d0a9a9a875bdcb19ee77105b9630a17966aea364abd61f07f0ac1a76b41f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64782.json", "taxon_id": "233413", "uniprot_accession": "P64782", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5134-pf17197.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17197", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5134-pf17197.yaml" } ], "pfam_ids": [ "PF17197" ], "protein_name": "Uncharacterized protein MT0998", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARVPTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSCTEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQEATQSRLPGSIGQAMMAAGMAMLFFAMLFPV", "sequence_length": 210, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a186d0a9a9a875bdcb19ee77105b9630a17966aea364abd61f07f0ac1a76b41f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKL6.json", "taxon_id": "83331", "uniprot_accession": "P9WKL6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5134-pf17197.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17197", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5134-pf17197.yaml" } ], "pfam_ids": [ "PF17197" ], "protein_name": "Uncharacterized protein Rv0970", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARVPTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSCTEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQEATQSRLPGSIGQAMMAAGMAMLFFAMLFPV", "sequence_length": 210, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a186d0a9a9a875bdcb19ee77105b9630a17966aea364abd61f07f0ac1a76b41f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKL7.json", "taxon_id": "83332", "uniprot_accession": "P9WKL7", "uniprot_release": "2026_03" } ], "pfam_id": "PF17197", "short_name": "DUF5134", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17198", "short_name": "AveC_like", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5137-pf17220.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17220", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5137-pf17220.yaml" } ], "pfam_ids": [ "PF17220" ], "protein_name": "Uncharacterized protein YJR107C-A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCDDSYDAVEEYYFNKSVAGISGQENWNKQLATQVYSRSLQPEILPTLKPLSCNKERANAGKRVSEEEQINGKRKRKD", "sequence_length": 78, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "067a9d9f635ced65fb718f8c328dd77d83f4965e1c2b24984153e0719e9a3ee6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0CT86.json", "taxon_id": "559292", "uniprot_accession": "P0CT86", "uniprot_release": "2026_03" } ], "pfam_id": "PF17220", "short_name": "DUF5137", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17224", "short_name": "DUF5300", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17225", "short_name": "DUF5301", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5302-pf17227.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17227", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5302-pf17227.yaml" } ], "pfam_ids": [ "PF17227" ], "protein_name": "Uncharacterized protein Rv1155A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGESKSPQESSSEGETKRKFREALDRKMAQSSSGSDHKDGGGKQSRAHGPVASRREFRRKSG", "sequence_length": 62, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "300d48da2567fe4e60ad591e6d580ba0b6b0cbe7346c15786b2e268eb5a59064", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A089QKZ7.json", "taxon_id": "83332", "uniprot_accession": "A0A089QKZ7", "uniprot_release": "2026_03" } ], "pfam_id": "PF17227", "short_name": "DUF5302", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/smg1-n-pf17229.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/smg1-n-pf17229.yaml" } ], "pfam_ids": [ "PF00454", "PF02260", "PF15785", "PF17229" ], "protein_name": "Serine/threonine-protein kinase SMG1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRKALGSRLSSAHKLQRNWNDWQPRSDSLSASQDGVKCSVSRDRGSEVLFEILPSDRPGTPPLHNDAFTATDALEEGGGYDADGGLSENAYGWKSLGQELRINDVTTDITTFQHGNRALATKDMRKSQDRPLAHSEESRLANLLRRASREDDRERRLATMKQMKEFIVHSENKVVLVKQLDSILSTLNDILNESSKLLQELRQEAAWCLGLLCAALSYEAERIFKWMFLKFSVSTKDEVKLLYLVAVHKALETAGEKKAFSAVMQLVMSNLQSILENLDTPELLCQSVKCILLVARCYPHIFSTNFRDTVDILVGWHIDHTQKHSLTQQVSGWLQSLEQFWVADLAFSTTLLGQFLEDMEAYAEDLSHVVSGESGDEDIPPPTVSLPKLAALLRVFSTVVHSIGERFNPIRGPPITEAYVTDVLNRVLACVTTAKQVFFSEAVLTAGNECVCVLLVSIDLGGQLIDAVISYGLDQLNCCQNCGPEYSLSVLTLLTLVVDQINTKLPASFVEKLLAPKSHLLELRFHREREVMAAAHGVYHAVLSLKNIPILEAAYKLVLGEMGCALNSLLSPLGLPDACPHIQHPAFSQLNFSPERAEFVLIFNLSALTTIGNTKNSLIGMWALSPTVFALLSQNLVIVHSDLAVHHPAVQYAVLYTLYSHCTRHDHFISSSLSSSSPSLFDGAVISTVTTATKRHFSTLLNLLGMLLSKDHLNPEARRLLLTWSLEVALMMKKSETYAPLFSLPSFLKFCKGLLANSLNEDTTICLQACNSLQVLSSSLTMELLQRCVDVCRVQLVHSAVRVRQAFGKLLRSVPMHVALSAHSHSEIKEISLAIRRHMSKVPSNTFHPQDFSDLIGFILYGTVHRGGKEPWLERLYHSCQRLEKKDSAMVPRALLKTEAVLWQWAVWEAAQFTVLSKLRTPLGRAQDTFQTIEGMIRSLAAHSLNTEQELSQWSGGESDEGHHTNQLRLALLLQFLENLEKLMYNAYEGCASALTAPPKGIRTFFYTNRQTCQDWLTRIRLALMRVGLLSGQPAVTVRHGFDLLTEIKNSSTQGPEMEVPVTMLVEALCELRCPEAIQGLAAWSLANTGKSMGWLSSVALQAEGKFEKAALEYQEQLCAVTGMDCSIKVFDRSLLKLTGTNTSSPKHTSSGEGRKTVLLKSSECSPEVLNFLANKACECYVALSDWESVQEWQASMMNLKKNSSSSSVNLKTDFNYIRSMSRFEEGDFTECRAQLELLPGDDYGLLNSTTKDKIDLKRLLPAVLSPDPSELQKAIEVQLLRSAVGAISATNHEQDQKVASSDTLVKYLKQTGRICLGPLRLSTLTLSDSLPTLSTLQLHCANSLENSLCNQHPEDCLIPLFSEALTTCKQQDVQPWLHALRYTTFQREFFQKLKGSSSPVDSHLMELCLTAVKFARKQGNIALATRLLSLCSKPAMSDTEGQDLVQSFRQLSLEGTVGEKWGPELEIEKAKVLFAAGQSVSAMEMLSSCALSYCHSGKCELAACRSVLTLCKWLLADWKDLTPQLKMVVKKNSGSTSLSTLSKNISGLLELPLEDQGMPHITTETTVSVGVGEPDFVLGQLYQLSTTQAPEVAKSWAALASWAYRWGRKVVDNASQGEGVPLLLGEKKEIEELLPAGTSDEDKETIFGILGQAMCRPAGIQDEDMALQNEEDDEDDMVDVIGRQLLGACPWLSDVEDTVTDGLIGVWRRVVDRIFSLYRVSCRAYFTFLKLNAGQVPIDEDDPKLLLNNQNSKQSSDDVIVMATLRLLRLLVKHAGELREGLEHGLASTPTAPWRGIIPQLFSRLNHPEAYIRQSICSLLCRVAQDSPHLILYPAIVGSISLGGEAQTAGNKLPSSLPTLLGNMQGEGLCGGESETGSGPTSQESSRGEEMVMYSSEDQAMMQDCYSKIVDKLSSANPTMVLQVQMLVGELRRVTLLWDELWLGVLQQQHMHVLRRIQQLEDEVKRVQNNNTLRKDEKVAIMREKHSALMKPVVFALDHVRSITAAPAETPHEEWFQETYGDAIHNALERLRSPLNPANPASSWVPFKQIMLSLQQRAQKRASYLLRLDEISPRLTAMANTEMALPGEVSATDAVTIQSVGNTITILPTKTKPKKLYFLGSDGRNYPYLFKGLEDLHLDERIMQFLSIVNTMFTKVNQQESPRFQARHYSVTPLGTRSGLIQWVDGATPLFGLYKRWQQREAVVQAQKAQDSFQQPQNLPMVPRPSELYYSKISPALKAVGLSLDVSRRDWPLSVMRDVLRELMEATPPNLLAKELWCSCTTPSEWWSVTQTYARSTAVMSMVGYIIGLGDRHLDNVLIDMTTGEVVHIDYNVCFEKGKSLRVPEKVPFRMTHNIETALGVTGVEGIFRLSCEQVVQIMRRGRETLLTLLEAFVYDPLVDWTAGGEVGFAGAVYGGGGQQAENKQSKREMERDITRSLFSSRVAEIKVNWFKNRDEMTGVLPQLEEAVDEYLNLQEQLTQVEKVQGKLLEELEFLEGADTRADHPIHSLEHRYSEHTQLQSRQRTVQDAIQGKLSDLDQWISQYQAAFASLEATQLASLLQEISSPIDLGPPSYVPATSFLQNAGQAHLISQCEALEAEVSALLQQRRSQLRGCLEHLHSYATVALLYPRAVLHRHRAHTWKQWMEELVCDMTVDHCQTIYHQYEMQFAPQPPPATCQFLSSIEMALQHHAAETNTRLLRQVERLKAEGASVPVCEEQLQEIERCIKVFLHEDAELGSFSLAGIIVSALCSLTRRNLVMEGAAASAGEQLVELTSRDGAWFLEELCSMSGNITCLVQLLQQCQLLSHDLDIPSPAETSQVVYLTNGVYTCLQELNTNFRQIIFPEALRCMLKGENTLETMLAELDALIDQCADGVSLQGLGEILMAHIRNASMGLEEDPDDHYLDVTRVLRAQYSELIQPRSMESSVQETPKMSAGQMLLVAFDGMFAQLETAFGLLIDKLNSMDVPAAWRKVDVIRESRATQAHFFDNVQTRQVLEEIFFLKRLQTIRDFFRLCGSFAQTLSGTCPTPTDDPPPSNGPVPIVKPLYRGSTVVSEDQMTRPIKAFTADFVRQMLMGLPTQALGLAICSSLSALGMDLIAQVEAKDFGAEGKVSLDDLCKKAVEQGVQAGRLSQLLLNRATVLASSYDTAWKKLDLVRRLEVSIEACKVSLQRNQLHIAMFQWQHEDILGARTQPMTVSPPPRSIILSNMKKKLYKLSQDDASIGSVQEKLASLEGSIEQRLKWAGGANPALAPVLQDFEATIAERRALVIKESQRANQVTFLCSTILNFEGLRTRTPEALNMDAALFELVKRCQATCSYAAQFNTSVSSLELQLLHRLSPAMDMSIGGPEWLVYAQNHLTQEMSSQRAMQEEREQQLESVTETLQLLVDSIKGTLSNHNRQLADVKHLLRAMAKDEENALAEGEEVTYDGSVRQFLSEYKAWQDNVQIVLFTVVQATGQPRSQEQIELLQEIPATLKELKVQSHSIYNGLVGFASPLVTERGSDCISPTSTVQTSFAAAVRCSGVKTQPDSMSQNARKALPRNFGTPADTPPSTLMINSKGLAPSPKRAVRDPKTGRAVQERNSYAVSVWKRVKAKLEGRDVDPNRRMSVTEQVDYVIKEATNVDNLAQLYEGWTAWV", "sequence_length": 3640, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e3967a0e00cf7b4ca3ff08a4cb44b50abe0ac79addf9f7e14b23b2b32b56168f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C5J7W8.json", "taxon_id": "7955", "uniprot_accession": "C5J7W8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/serine-threonine-protein-kinase-smg1-n-terminal-ipr035175.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035175", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/serine-threonine-protein-kinase-smg1-n-terminal-ipr035175.yaml" } ], "pfam_ids": [ "PF17229" ], "protein_name": "Putative uncharacterized SMG1-like protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRRAPGSRLSSGGTNYSRSWNDWQPRTDSASADPGNLKYSSSRDRGGSSSYGLQPSNSAVVSRQRHDDTRVHADIQNDEKGGYSVNGGSGENTYGRKSLGQELRVNNVTSPEFTSVQHGSRALATKDMRKSQERSMSYCDESRLSNLLRRITREDDRD", "sequence_length": 159, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7fd3256f62aa1f5d263a81abc71ac802d3c9579732e204aef3aefb0c169590d4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6P435.json", "taxon_id": "9606", "uniprot_accession": "Q6P435", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/smg1-n-pf17229.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/smg1-n-pf17229.yaml" } ], "pfam_ids": [ "PF00454", "PF02260", "PF15785", "PF17229" ], "protein_name": "Serine/threonine-protein kinase SMG1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRRAPGSRLSSGGGGTKYPRSWNDWQPRTDSASADPDTLKYSSSRDRGVSSSYGLQPSNSAVVSRQRHDDTRGHADIQNDEKGGYSVNGGSGENTYGRKSLGQELRINNVTSPEFTSVQHGSRALATKDMRKSQERSMSYSDESRLSNLLRRITREDDRDRRLATVKQLKEFIQQPENKLVLVKQLDNILAAVHDVLNESSKLLQELRQEGACCLGLLCASLSYEAEKIFKWIFSKFSSSAKDEVKLLYLCATYRALETVGEKKAFSSVMQLVMTSLQSILENVDTPELLCKCVKCILLVARCYPHIFSTNFRDTVDILVGWHIDHTQKPSLTQQVSGWLQSLEPFWVADLAFSTTLLGQFLEDMEAYAEDLSHVASGESVDEDVPPPSVSLPKLAALLRVFSTVVRSIGERFSPIRGPPITEAYVTDVLYRVMRCVTAANQVFFSEAVLTAANECVGVLLGSLDPSMTIHCDMVITYGLDQLENCQTCGTDYIISVLNLLTLIVEQINTKLPSSFVEKLFIPSSKLLFLRYHKEKEVVAVAHAVYQAVLSLKNIPVLETAYKLILGEMTCALNNLLHSLQLPDACSEIKHEAFQNHVFNIDNANFVVIFDLSALTTIGNAKNSLIGMWALSPTVFALLSKNLMIVHSDLAVHFPAIQYAVLYTLYSHCTRHDHFISSSLSSSSPSLFDGAVISTVTTATKKHFSIILNLLGILLKKDNLNQDTRKLLMTWALEVAVLMKKSETYAPLFSLPSFHKFSKGLLANTLVEDVNICLQACSSLHALSSSLPDDLLQRCVDVCRVQLVHSGTRIRQAFGKLLKSIPLDVVLSNNNHTEIQEISLALRSHMSKAPSNTFHPQDFSDVISFILYGNSHRTGKDNWLERLFYSCQRLDKRDQSTIPRNLLKTDAVLWQWAIWEAAQFTVLSKLRTPLGRAQDTFQTIEGIIRSLAAHTLNPDQDVSQWTTADNDEGHGSNQLRLVLLLQYLENLEKLMYNAYEGCANALTSPPKVIRTFFYTNRQTCQDWLTRIRLSIMRVGLLAGQPAVTVRHGFDLLTEMKTNSLTQGSELEVTIMMVVEALCELHCPEAIQGIAVWSSSAVGKNLLWINSVAQQAEGRFEKASVEYQEHLCAMTGVDCCISSFDKSVLTLANAGRNSASPKHSLNGESRKTVLSKSIDSSPEVISYLGNKACECYISIADWAAVQEWQNAVHDLKKNSSSTSLNLKADFNYIKSLSSFESGEFVECTEQLELLPGENINLLAGGSKEKIDMKKLLPNMLSPDPRELQKSIEVQLLRSSVFLATALNHMEQDQKWQSLTENVVKYLKQTSRIAIGPLRLSTLTVSQSLPVLSTLQLYCSSALENTVSNRLSTEDCLIPLFSDALRSCKQHDVRPWMQALRYTMYQNQLLEKIKEQTVPIRSHLMELGLTAAKFARKRGNVSLATRLLAQCSEVQLGKTTTAQDLVQHFKKLSTQGQVDEKWGPELDIEKTKLLYTAGQSTHAMEMLSSCAISFCKSAKAEYAVAKSILTLAKWVQAEWKEISGQLRQVYRAQQQQNLSGLSTLSRNILALIELPSANTVGEEHPRIESESTVHIGVGEPDFILGQLYHLSSVQAPEVAKSWAALASWAYRWGRKVVDNASQGEGVRLLPREKSEVQNLLPDTITEEEKERIYGILGQAVCRPAGIQDEDITLQITESEDNEDDDMVDVIWRQLISSCPWLSELDENATEGVIKVWRKVVDRIFSLYKLSCSAYFTFLKLNAGQVLLDEDDPRLHLSHRAEQSTDDVIVMATLRLLRLLVKHAGELRQYLEHGLETTPTAPWRGIIPQLFSRLNHPEVYVRQSICNLLCRVAQDSPHLILYPAIVGTISLSSESQASGNKYSSAIPTLLGNIQGEELLVSECEGGSPPASQDSNKDEPKSGLNEDQAMMQDCYSKIVDKLSSANPTMVLQVQMLVAELRRVTVLWDELWLGVLLQQHMYVLRRIQQLEDEVKRVQNNNTLRKEEKIAIMREKHTALMKPIVFALEHVRSITAAPAETPHEKWFQDNYGDAIDNALEKLKTPSNPAKPGSSWIPFKEIMLSLQQRAQKRASYILRLDEISPWLAAMTNTEIALPGEVSARDTVTIHSVGGTITILPTKTKPKKLLFLGSDGKSYPYLFKGLEDLHLDERIMQFLSIVNTMFATINRQETPRFHARHYSVTPLGTRSGLIQWVDGATPLFGLYKRWQQREAALQAQKAQDSYQTPQNPSIVPRPSELYYSKIGPALKTVGLSLDVSRRDWPLHVMKAVLEELMEATPPNLLAKELWSSCTTPDEWWRVTQSYARSTAVMSMVGYIIGLGDRHLDNVLIDMTTGEVVHIDYNVCFEKGKSLRVPEKVPFRMTQNIETALGVTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWTAGGEAGFAGAVYGGGGQQAESKQSKREMEREITRSLFSSRVAEIKVNWFKNRDEMLVVLPKLDSSLDEYLSLQEQLTDVEKLQGKLLEEIEFLEGAEGVDHPSHTLQHRYSEHTQLQTQQRAVQEAIQVKLNEFEQWITHYQAAFNNLEATQLASLLQEISTQMDLGPPSYVPATAFLQNAGQAHLISQCEQLEGEVGALLQQRRSVLRGCLEQLHHYATVALQYPKAIFQKHRIEQWKAWMEELICNTTVERCQELYRKYEMQYAPQPPPTVCQFITATEMTLQRYAADINSRLIRQVERLKQEAVTVPVCEDQLKEIERCIKVFLHENGEEGSLSLASVIISALCTLTRRNLMMEGAASSAGEQLVDLTSRDGAWFLEELCSMSGNVTCLVQLLKQCHLVPQDLDIPNPVEASEAVHLANGVYTSLQELNSNFRQIIFPEALRCLMKGECTLESMLHELDSLIEQTTDGVPLQTLVESLQAYLRNTAMGLEEETHAHYIDVARMLHAQYGELIQPRNGSVDETPKMSAGQMLLVAFDGMFAQVETAFGLLVEKLNKMEIPVAWRKIDIIREARSTQVNFFDDDNHRQVLEEIFFLKRLQTIKEFFRLCGTFSKTLSGSSSLEDQNTVNGPVQIVNVKTLFRNSCFSEDQMAKPIKAFTADFVRQLLIGLPNQALGLTLCSFISALGVDIIAQVEAKDFGAESKVSVDDLCKKAVEHNIQVGKFSQLVMNRATVLASSYDTAWKKHDLVRRLETSISSCKTSLQRVQLHIAMFQWQHEDLLISRPQAMSVTPPRSAILTSMKKKLHALSQIETSIGTVQEKLAALEASIEQRLKWAGGANPALAPVLQDFEATIAERRNLVLKESQRANQVTFLCSNIIHFESLRTRTAEALSLDAALFELIKRCQQMCSFASQFNSSVSELELRLLQRVDTTLEHPIGSSEWLLSAHKQLTQDMSTQRAVQTEKEQQIETVCETIQSLVDSVKTVLTGHNRQLGDVKHLLKAMAKDEEAALADAEDIPYESSVRQFLAEYKSWQDNIQTVLFTLVQAMGQVRSQEHVEMLQEITPTLKELKTQSQSIYNNLVSFASPLVTDAANECSSPTSSATYQPSFAAAVRSNTGQKTQPDVMSQNAKKLIQKNLATSADTPPSTIPGTGKSIACSPKKAVRDPKTGKAVQERNSYAVSVWKRVKAKLEGRDVDPNRRMSVAEQVDYVIKEATNLDNLAQLYEGWTAWV", "sequence_length": 3658, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f8e741608681ca007453a830825f1d9d667f0eaea4a0db90bbf78882bf600689", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BKX6.json", "taxon_id": "10090", "uniprot_accession": "Q8BKX6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/disorder/pfam/smg1-n-pf17229.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/disorder/pfam/smg1-n-pf17229.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fatc-pf02260.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02260", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fatc-pf02260.yaml" } ], "pfam_ids": [ "PF00454", "PF02260", "PF15785", "PF17229" ], "protein_name": "Serine/threonine-protein kinase SMG1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRRAPGSRLSSGGGGGGTKYPRSWNDWQPRTDSASADPDNLKYSSSRDRGGSSSYGLQPSNSAVVSRQRHDDTRVHADIQNDEKGGYSVNGGSGENTYGRKSLGQELRVNNVTSPEFTSVQHGSRALATKDMRKSQERSMSYSDESRLSNLLRRITREDDRDRRLATVKQLKEFIQQPENKLVLVKQLDNILAAVHDVLNESSKLLQELRQEGACCLGLLCASLSYEAEKIFKWIFSKFSSSAKDEVKLLYLCATYKALETVGEKKAFSSVMQLVMTSLQSILENVDTPELLCKCVKCILLVARCYPHIFSTNFRDTVDILVGWHIDHTQKPSLTQQVSGWLQSLEPFWVADLAFSTTLLGQFLEDMEAYAEDLSHVASGESVDEDVPPPSVSLPKLAALLRVFSTVVRSIGERFSPIRGPPITEAYVTDVLYRVMRCVTAANQVFFSEAVLTAANECVGVLLGSLDPSMTIHCDMVITYGLDQLENCQTCGTDYIISVLNLLTLIVEQINTKLPSSFVEKLFIPSSKLLFLRYHKEKEVVAVAHAVYQAVLSLKNIPVLETAYKLILGEMTCALNNLLHSLQLPEACSEIKHEAFKNHVFNVDNAKFVVIFDLSALTTIGNAKNSLIGMWALSPTVFALLSKNLMIVHSDLAVHFPAIQYAVLYTLYSHCTRHDHFISSSLSSSSPSLFDGAVISTVTTATKKHFSIILNLLGILLKKDNLNQDTRKLLMTWALEAAVLMKKSETYAPLFSLPSFHKFCKGLLANTLVEDVNICLQACSSLHALSSSLPDDLLQRCVDVCRVQLVHSGTRIRQAFGKLLKSIPLDVVLSNNNHTEIQEISLALRSHMSKAPSNTFHPQDFSDVISFILYGNSHRTGKDNWLERLFYSCQRLDKRDQSTIPRNLLKTDAVLWQWAIWEAAQFTVLSKLRTPLGRAQDTFQTIEGIIRSLAAHTLNPDQDVSQWTTADNDEGHGNNQLRLVLLLQYLENLEKLMYNAYEGCANALTSPPKVIRTFFYTNRQTCQDWLTRIRLSIMRVGLLAGQPAVTVRHGFDLLTEMKTTSLSQGNELEVTIMMVVEALCELHCPEAIQGIAVWSSSIVGKNLLWINSVAQQAEGRFEKASVEYQEHLCAMTGVDCCISSFDKSVLTLANAGRNSASPKHSLNGESRKTVLSKPTDSSPEVINYLGNKACECYISIADWAAVQEWQNAIHDLKKSTSSTSLNLKADFNYIKSLSSFESGKFVECTEQLELLPGENINLLAGGSKEKIDMKKLLPNMLSPDPRELQKSIEVQLLRSSVCLATALNPIEQDQKWQSITENVVKYLKQTSRIAIGPLRLSTLTVSQSLPVLSTLQLYCSSALENTVSNRLSTEDCLIPLFSEALRSCKQHDVRPWMQALRYTMYQNQLLEKIKEQTVPIRSHLMELGLTAAKFARKRGNVSLATRLLAQCSEVQLGKTTTAQDLVQHFKKLSTQGQVDEKWGPELDIEKTKLLYTAGQSTHAMEMLSSCAISFCKSVKAEYAVAKSILTLAKWIQAEWKEISGQLKQVYRAQHQQNFTGLSTLSKNILTLIELPSVNTMEEEYPRIESESTVHIGVGEPDFILGQLYHLSSVQAPEVAKSWAALASWAYRWGRKVVDNASQGEGVRLLPREKSEVQNLLPDTITEEEKERIYGILGQAVCRPAGIQDEDITLQITESEDNEEDDMVDVIWRQLISSCPWLSELDESATEGVIKVWRKVVDRIFSLYKLSCSAYFTFLKLNAGQIPLDEDDPRLHLSHRVEQSTDDMIVMATLRLLRLLVKHAGELRQYLEHGLETTPTAPWRGIIPQLFSRLNHPEVYVRQSICNLLCRVAQDSPHLILYPAIVGTISLSSESQASGNKFSTAIPTLLGNIQGEELLVSECEGGSPPASQDSNKDEPKSGLNEDQAMMQDCYSKIVDKLSSANPTMVLQVQMLVAELRRVTVLWDELWLGVLLQQHMYVLRRIQQLEDEVKRVQNNNTLRKEEKIAIMREKHTALMKPIVFALEHVRSITAAPAETPHEKWFQDNYGDAIENALEKLKTPLNPAKPGSSWIPFKEIMLSLQQRAQKRASYILRLEEISPWLAAMTNTEIALPGEVSARDTVTIHSVGGTITILPTKTKPKKLLFLGSDGKSYPYLFKGLEDLHLDERIMQFLSIVNTMFATINRQETPRFHARHYSVTPLGTRSGLIQWVDGATPLFGLYKRWQQREAALQAQKAQDSYQTPQNPGIVPRPSELYYSKIGPALKTVGLSLDVSRRDWPLHVMKAVLEELMEATPPNLLAKELWSSCTTPDEWWRVTQSYARSTAVMSMVGYIIGLGDRHLDNVLIDMTTGEVVHIDYNVCFEKGKSLRVPEKVPFRMTQNIETALGVTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWTAGGEAGFAGAVYGGGGQQAESKQSKREMEREITRSLFSSRVAEIKVNWFKNRDEMLVVLPKLDGSLDEYLSLQEQLTDVEKLQGKLLEEIEFLEGAEGVDHPSHTLQHRYSEHTQLQTQQRAVQEAIQVKLNEFEQWITHYQAAFNNLEATQLASLLQEISTQMDLGPPSYVPATAFLQNAGQAHLISQCEQLEGEVGALLQQRRSVLRGCLEQLHHYATVALQYPKAIFQKHRIEQWKTWMEELICNTTVERCQELYRKYEMQYAPQPPPTVCQFITATEMTLQRYAADINSRLIRQVERLKQEAVTVPVCEDQLKEIERCIKVFLHENGEEGSLSLASVIISALCTLTRRNLMMEGAASSAGEQLVDLTSRDGAWFLEELCSMSGNVTCLVQLLKQCHLVPQDLDIPNPMEASETVHLANGVYTSLQELNSNFRQIIFPEALRCLMKGEYTLESMLHELDGLIEQTTDGVPLQTLVESLQAYLRNAAMGLEEETHAHYIDVARLLHAQYGELIQPRNGSVDETPKMSAGQMLLVAFDGMFAQVETAFSLLVEKLNKMEIPIAWRKIDIIREARSTQVNFFDDDNHRQVLEEIFFLKRLQTIKEFFRLCGTFSKTLSGSSSLEDQNTVNGPVQIVNVKTLFRNSCFSEDQMAKPIKAFTADFVRQLLIGLPNQALGLTLCSFISALGVDIIAQVEAKDFGAESKVSVDDLCKKAVEHNIQIGKFSQLVMNRATVLASSYDTAWKKHDLVRRLETSISSCKTSLQRVQLHIAMFQWQHEDLLINRPQAMSVTPPPRSAILTSMKKKLHTLSQIETSIATVQEKLAALESSIEQRLKWAGGANPALAPVLQDFEATIAERRNLVLKESQRASQVTFLCSNIIHFESLRTRTAEALNLDAALFELIKRCQQMCSFASQFNSSVSELELRLLQRVDTGLEHPIGSSEWLLSAHKQLTQDMSTQRAIQTEKEQQIETVCETIQNLVDNIKTVLTGHNRQLGDVKHLLKAMAKDEEAALADGEDVPYENSVRQFLGEYKSWQDNIQTVLFTLVQAMGQVRSQEHVEMLQEITPTLKELKTQSQSIYNNLVSFASPLVTDATNECSSPTSSATYQPSFAAAVRSNTGQKTQPDVMSQNARKLIQKNLATSADTPPSTVPGTGKSVACSPKKAVRDPKTGKAVQERNSYAVSVWKRVKAKLEGRDVDPNRRMSVAEQVDYVIKEATNLDNLAQLYEGWTAWV", "sequence_length": 3661, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b0b276fa2ac85f080f6a3a396341d165b53fca7d50d01d3b3bcfeb59236a2384", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q96Q15.json", "taxon_id": "9606", "uniprot_accession": "Q96Q15", "uniprot_release": "2026_03" } ], "pfam_id": "PF17229", "short_name": "SMG1_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5304-pf17230.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17230", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5304-pf17230.yaml" } ], "pfam_ids": [ "PF17230" ], "protein_name": "Uncharacterized protein SCO2127", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEELPPSEAPRPDEADAVDETRATGETRGAAQEPGASDADAWATACAEDLEAEKARRRAAYGPPPGSAAEELRRLVDTVADKLSGLQSPLLGQVAGPAAQQVVRQVVQQAKAAVEPVIERNPDLFDHLAAAGGELLAAYRSAVQNQERRWTTGDTAPKDPSDPRDLDERGTDGRDEGDGGTGPGQRIDLD", "sequence_length": 191, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "27cbcf650523b8bac45d13360230c5367f9e89999ba69ed65a6913188b41dcec", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40182.json", "taxon_id": "100226", "uniprot_accession": "P40182", "uniprot_release": "2026_03" } ], "pfam_id": "PF17230", "short_name": "DUF5304", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5305-pf17231.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5305-pf17231.yaml" } ], "pfam_ids": [ "PF17231" ], "protein_name": "Uncharacterized protein AF_1654", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNFKLIVRKWYIPVLIISLITLVASAYALYWATIPETKETQISIRHYSALAYFSGGAEVKKDNPIWANGSFVTLPVYSYSLTPEYSGEFYFTTAPRGDITIETEAKIVYFYEVSDAPVWEKVYYAASNTSRGEIKTNFKINVTDLKSKINEAQNSFGVYLGKTGARIDVSVHYYGKITGKDVDETLSFKIPIDVQSTYYSFSTLNETRDFEMPSTRVVEVQKPLHMKVIPAALCTVSIIFAGLSVVYRTKYSDVSSLEREIERVSWEKKLKEVSFARMPETNLEMVEVERFEDISKAAEETFEHLFYDREKGVFFFIHGGVLYYCREK", "sequence_length": 329, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b817ecc1c71982b3f4049c8e46b46055cb3f191ab74c58aaa71862bf61a5741a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O28619.json", "taxon_id": "224325", "uniprot_accession": "O28619", "uniprot_release": "2026_03" } ], "pfam_id": "PF17231", "short_name": "DUF5305", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 7, "discovery_scanned": true, "example_count": 7, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pep1-7-pf17232.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pep1-7-pf17232.yaml" } ], "pfam_ids": [ "PF17232" ], "protein_name": "Elicitor peptide 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEGEGRREDGDCSYLCIPFNSIRDIFQSFFTRFRGLTPDNSPVTISQEVEEETEVVNIPRSVVSGNVAARKGKQQTSSGKGGGTN", "sequence_length": 85, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "258f796b1de6edb109495b05475fc5003d3197ed82f6a508c0ba0c8d059c6abd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C1T5.json", "taxon_id": "3702", "uniprot_accession": "P0C1T5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pep1-7-pf17232.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pep1-7-pf17232.yaml" } ], "pfam_ids": [ "PF17232" ], "protein_name": "Elicitor peptide 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENLRNGEDNGSLIPFTFFDQSSVTIPLLKCSGLESSSSSSSSCDLSSSHSEEDESIDIKEEEEEEEEDGMTIEIKARGKNKTKPTPSSGKGGKHN", "sequence_length": 96, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3ce7e5f915c3a316fa40cfb2c933d967e401b69b85f3012c46d48d08592ed19a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LAX3.json", "taxon_id": "3702", "uniprot_accession": "Q8LAX3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pep1-7-pf17232.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pep1-7-pf17232.yaml" } ], "pfam_ids": [ "PF17232" ], "protein_name": "Elicitor peptide 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQQERDHKRDCCKLMPQTVKAFFKCLRFRRSSSSSSDMVKARARNEEKEEPSSIETSTRSLNVMRKGIRKQPVSSGKRGGVNDYDM", "sequence_length": 86, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "932bf36f2c23c61111a7e0567379a409aa026be1f8506c03dcc3f07f8ecc52e6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LD63.json", "taxon_id": "3702", "uniprot_accession": "Q8LD63", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pep1-7-pf17232.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pep1-7-pf17232.yaml" } ], "pfam_ids": [ "PF17232" ], "protein_name": "Elicitor peptide 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERGVSYYLWIPFKFIHQTFGSLLLKLLGLRSPSDHSFPEDGEEEVKVVEVSSRGLPGKKNVLKKSRESSGKPGGTNKKPF", "sequence_length": 81, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1ec30cb91a634c8a541e3b27675e258e1614edc1ab261a39ff220402f09dc6a4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FIA9.json", "taxon_id": "3702", "uniprot_accession": "Q9FIA9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pep1-7-pf17232.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pep1-7-pf17232.yaml" } ], "pfam_ids": [ "PF17232" ], "protein_name": "Precursor of elicitor peptide 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKSDRRSEESHLWIPLQCLDQTLRAILKCLGLFHQDSPTTSSPGTSKQPKEEKEDVTMEKEEVVVTSRATKVKAKQRGKEKVSSGRPGQHN", "sequence_length": 92, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "031c64b6f0e5d73dcb6f4b73991a924d4cf3032f0ded94857b50bf5eb1b5828f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LV87.json", "taxon_id": "3702", "uniprot_accession": "Q9LV87", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pep1-7-pf17232.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pep1-7-pf17232.yaml" } ], "pfam_ids": [ "PF17232" ], "protein_name": "Elicitor peptide 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKLDKRREEETYLWIPVQFLDQALIAVLKCIGLLCQPAKKTAPSPVTFNQPEEQEEDYGVALKDDDVVVLLRDNKAKSKKRDKEKPSSGRPGQTNSVPNAAIQVYKED", "sequence_length": 109, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e96c0443e496fb6113d9268573913c5a2e058d2f3445e85ecaf602344430ece6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LV88.json", "taxon_id": "3702", "uniprot_accession": "Q9LV88", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/pep1-7-pf17232.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17232", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/pep1-7-pf17232.yaml" } ], "pfam_ids": [ "PF17232" ], "protein_name": "Elicitor peptide 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVNGEEERRSRREDEEKEDYYYSLLNSPCSVCNKFVQAILKCLGLESSSIPPSSSSSSPSLVEEEDSGTETVEETGFMARITAVLRRRPRPPPYSSGRPGQNN", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6569c3ca76f106b9d8e85e18a1a7e777a2bc9c4dd6a519185b4e5e8b027cb36b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SIZ9.json", "taxon_id": "3702", "uniprot_accession": "Q9SIZ9", "uniprot_release": "2026_03" } ], "pfam_id": "PF17232", "short_name": "Pep1_7", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17233", "short_name": "DUF5308", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17236", "short_name": "SU10_MCP", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/emr1-pf17237.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/emr1-pf17237.yaml" } ], "pfam_ids": [ "PF17237" ], "protein_name": "ERMES regulator 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIFFFNQIRSIFTALHTPTQQIQLSRRAFFQFLGYLGSCVVISLAAQSKYVQ", "sequence_length": 52, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eb5370094965b8cbfbbfae4d3b36f9a04b4b341a6c6fa5316a2d304467e49ee4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3E828.json", "taxon_id": "559292", "uniprot_accession": "Q3E828", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/emr1-pf17237.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/emr1-pf17237.yaml" } ], "pfam_ids": [ "PF17237" ], "protein_name": "ERMES regulator 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPNLRRIFASFRTEEEERSYSRKAFFHLIGYITCSVLFSWLVRKKVISSPVVSSPIHALS", "sequence_length": 61, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1fafc8bd5d53bcc13061db750170c385a9576d8ac545660fe61cff324d93a795", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q4ZGE1.json", "taxon_id": "284812", "uniprot_accession": "Q4ZGE1", "uniprot_release": "2026_03" } ], "pfam_id": "PF17237", "short_name": "Emr1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nucleoporin-nup120-160-beta-propeller-domain-ipr059141.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR059141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nucleoporin-nup120-160-beta-propeller-domain-ipr059141.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nup160-c-terminal-tpr-domain-ipr056536.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056536", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nup160-c-terminal-tpr-domain-ipr056536.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nup160-middle-tpr-domain-ipr056535.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/nup160-helical-2-pf17238.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17238", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/nup160-helical-2-pf17238.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-nup120-160-pf11715.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-nup120-160-pf11715.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-nup160-120-m-pf23354.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-nup160-120-m-pf23354.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-nup160-c-pf23347.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23347", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-nup160-c-pf23347.yaml" } ], "pfam_ids": [ "PF11715", "PF17238", "PF23347", "PF23354" ], "protein_name": "Nuclear pore complex protein NUP160", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEENRRNPSAGMEVPVAGGGNVVKWIEISVPSPSVSSSSIGANSSEDNECVQLPLSEDYASSSVIGEPSISFVWRINKTSPNALELLQLSAKSGFPITGLRFVFAQTLSPFAFVYADEGGDSGRLVYFLYSLTPSGVVYVLKLSNTLAYKSGSVFPLDHLIHLDVRPYLNESRVTSVAASPGFIFLGRSDGCVSCFQPIVYFQKSSGFHQELRDDTGFGRLGTVVAAVQDLFISEVHGRNYLCVLHADGALRVWDILTYSRVLCQSIAAKNLEGVMCVRLWLGKADYDSGIIPLAVLYRKSMNDSMDVITVYGLHFSSAEGIALSLDSGLQNIPLEEGELRDVRFTSDKIWTLKANELTSYMLCQKSSTMEAQSYTLQEDYISEQLFLSSRSSSHDLLLTTHSLFSSAKDQIMGFISSIFLRRLLCPGIFHNVALRLTLLDHNKNWTDSEFQSLSLDELTSEILLLVEHEVTAETSISVFHWWKNFCTSYLHHWCSNNEPRTLLVQSDVIGLVRNNSVSLFFRLENAEHSLGGSSSEHSNLTSLDLGVSHSDHEILAEVLRCTSKISKQWGGAPYAMYYESITGRPIISSDEIVPRLVNILESGYSTTIGQRTWSDLGADRAWEKELEAHKNLRTFSIDMLLSLSALCQRAGSWEKVFTIMEHYLQYLVPKKSMQKNDGEALSDICSSILVQATSQFVKVMFESAFDIFLLISYLLNIAGQVNMSQQDICKLRLELLPMIQDIVSEWLIILFFVTTPAESTSMEDFSLKLSSLQIDSSIDKRSWNAMLGKCGFSLAFILLFSDRSCIVDGRFNLRYLPSSQIITSLVQNFISWIRYSKTGDDSSSLLRRSTELSLRLIRNGQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCCLLDQVQRGASGILRERKIIDAIRCFFRASSGEGSWKALHSLSKEAGFSPATTGPSILDGSTSSAAWKLHYYEWAMQIFERYNISEGACQFAYAALEQVDDAYNFIEMTEEFDPTKAATYTRGRLWANVFKFTLDLNLLNDAYCAIISNPDEEIKRICLRRFIIVLFECGKTKILSDGHLPFIGLTEKITQELFWKAGRSDIMMKPNPYKLLYAYEMRRHNWRMAASYMYQFSARLRSEGACKDYKHMSLVLQERLNGLSAAMNALALVHPGYAWIDPVPEETTRYPVKKARRAEEEQLRSNDQPKGEKSCIDIEKLQNEFVFTTAEYMLSLKNFGWTYSGLEKPPSDLVDLLVQANLYDMAFTVVLKFWRGSALKRELEKIFENMAIKCCPAKGTLWSSPNLMLTSNDEEVTHSPDRSPADQGSKLAGDWEILEVYLKRYIDIHARLPVSVASTLLQADSCIELPLWLIQMFKDGQKEKALGMAGQEASPASLFQLYVDYGRLTEATNLLLEYMESFASSKPAEVLKRKKVSGVWFPYTTVERLWWELEKTMNSGRMVEQCHKLKEQLHHALLNHLKLLKVDSNDAVSSATG", "sequence_length": 1495, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d50b6a43de9e35a45982c49bcb36db0f9a626ef7fada7c7d389595108dcf706a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9C811.json", "taxon_id": "3702", "uniprot_accession": "Q9C811", "uniprot_release": "2026_03" } ], "pfam_id": "PF17238", "short_name": "NUP160_helical_2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Treponema pallidum (strain DSM 117211 / Nichols)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5312-pf17239.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5312-pf17239.yaml" } ], "pfam_ids": [ "PF17239" ], "protein_name": "Uncharacterized protein TP_0110", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRGYGDAMNEQLSTFDKLVETLSTEDAQRMLAGIGKALRTSEANAETPAKVKKKRAFARWDTREDSLAGETFFFRFWIGVKSFFRSSSVEALYEETLLQRLGNDLKAHYAQYIDVKEKTFTKVFYDKMGELRKTQVFFDSLLACYNSDKGDFYLLLSSFITPVVYEQLMACSDPFAAQGDGTPSGLRASLLKRMDVALATLSGPHKTELYQAARAIEWMKVFCEVPVDRILLRFTVISPASAVCPITILQSELEKLACVIHDSKHIPDAVLQGLFVLKSKTSLHDAQVDNAAHAAAFLKEASAALVVIKDLSHSIPIEDFVRFAGRNIRWQPRAIAGGEDWFVLFKKAWKKRFNEKWALWSTAQKRLVLKEQMLSLLGREQFSELTHRPWEGFWYQLVFRREMSFVFLKNLFEGAYARVVSPPLNVILAEGSFYRRDELIEYTDAVNVLEQMGAKIRNFEVRLSPVGEWGVAFSAQRKEHTVTMKSKGILEALIKVIDSEATVLLDATLKAFHCIGAMLASMIGASKTSAYATLTNWSDIRGSDNASFREQASQARAYVQTASRALVEMENLETTHL", "sequence_length": 577, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9050b43bbb72a91da639712ca0224c95c99b9be406c38c3fbedae20e89362fba", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O83148.json", "taxon_id": "243276", "uniprot_accession": "O83148", "uniprot_release": "2026_03" } ], "pfam_id": "PF17239", "short_name": "DUF5312", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5313-pf17240.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17240", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5313-pf17240.yaml" } ], "pfam_ids": [ "PF17240" ], "protein_name": "Uncharacterized protein Rv2742A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDNAIRPRPNPWQYIRYCYGARLPDSMRDWVRNDLAGKGAAIRMMIRVAVPAVLVLAPFWLIPTSLDVHLSMTLPILIPFVYFSHALNKVWRRHMLRVHNLDPELVDEHARQRDAHIHRAYIERYGPRPDPND", "sequence_length": 134, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "200bd7ef4fe206333973cd2701b4277a83783b740aff1d1689fd6b2b5a30ba54", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DMQ8.json", "taxon_id": "83332", "uniprot_accession": "P0DMQ8", "uniprot_release": "2026_03" } ], "pfam_id": "PF17240", "short_name": "DUF5313", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/retrotran-gag-4-pf17241.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17241", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/retrotran-gag-4-pf17241.yaml" } ], "pfam_ids": [ "PF17241" ], "protein_name": "Putative uncharacterized protein YCL076W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTYKLDRNSLRQQVMSPQSNASENIINLSSPNNYKQWLYGIETAAEYANEYMNEFVHTGDIQSMKRDYNLSANDESFVKTVFNSFLVKLYKKTIVGEAACEMNWICDDSLGRVSAYDIFSHFEENYNEVTIGSRLTLIEDLPNISSKPVDEIASFLKTLFTMLEDNSEEQDKKKRRDTNIALLLMTFLPELKESFHEKFGDSKALQLSQVIRFCKLNASSNSSSSVSDALVAQDRRNYQKKGNKGCI", "sequence_length": 247, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ef28bc0b8bb7966373cbf0b591ee0bb95d8342850f05b05ab853b87b7115de08", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P25602.json", "taxon_id": "559292", "uniprot_accession": "P25602", "uniprot_release": "2026_03" } ], "pfam_id": "PF17241", "short_name": "Retrotran_gag_4", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5315-pf17242.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17242", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5315-pf17242.yaml" } ], "pfam_ids": [ "PF17242" ], "protein_name": "Uncharacterized protein YBR197C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGVKQTPPVQVKVSDADSTNRRKSSSQEGNPQLVQLKAKSDKDKRKGSSDSTASIMGSSNALPTKNLTTPPALNPLTTSISRGNTAYERSVNGSRITMHSNLAPTETQDVSWSEIDTLDDVKKMAKEPIVNDGFPRDFESNLTQMRKSHAQLLRLMRERNQRLKYAKLRSPPHKDQHNSATNKDQEPDEVLHDPEIALDGEKYVSQVVDTIKDVHRC", "sequence_length": 217, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b389d84e677cbd4f630da21d41d4de2fa9cb7a9f0a7fb7d58d0b42aa9a52175b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38306.json", "taxon_id": "559292", "uniprot_accession": "P38306", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5315-pf17242.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17242", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5315-pf17242.yaml" } ], "pfam_ids": [ "PF17242" ], "protein_name": "Uncharacterized protein YPL077C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKDLQKKSSVRRQITNEDDERYGEDSIHDLPRTIPNVNPYIRNSGFRPSYSSQIPSTRSLFNNYYNRSSANTVGNDTIDTDSVSYNGVAKFRRNSVDIPLQTHNRLEVRPIIDRQDYLWREIDALDDVKRQAQATELYDQFPPGFENKLMQLRQAHSKLLQVLRDRNAKIEEEQRREVAVATAAAMMTRTPSPTGKSVGDEATSNNMHSSSAIRNPNGPTVDPEEGKYIQELVNTIRELQ", "sequence_length": 240, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bd6503c4229c9b800dedd318be8b5b15202ca7707869a93b220af455ed2ce160", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q02831.json", "taxon_id": "559292", "uniprot_accession": "Q02831", "uniprot_release": "2026_03" } ], "pfam_id": "PF17242", "short_name": "DUF5315", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5316-pf17247.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17247", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5316-pf17247.yaml" } ], "pfam_ids": [ "PF17247" ], "protein_name": "Uncharacterized protein YwkF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKALTAGILLIAIESMIGTIFPQALSYEAIFGVASLVLVGLAIITSGLAVSGSDQRANYHSETKEGRTSRMKMAAAFFVAAIPSILCYLLTILF", "sequence_length": 95, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9c851318d5c19dfabe1bdc13bb1179d38fcd113478f651f8ee9627a7ada63de", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P45874.json", "taxon_id": "224308", "uniprot_accession": "P45874", "uniprot_release": "2026_03" } ], "pfam_id": "PF17247", "short_name": "DUF5316", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5317-pf17248.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17248", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5317-pf17248.yaml" } ], "pfam_ids": [ "PF17248" ], "protein_name": "Uncharacterized protein TM_1467.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMIDVFLIALLLSILTGNIKNVLKYNYKGLYLFAIPFVLQLLPWKEILVPLSFVMLFLFFIWNRNIPGFKLMAIGAVLNGFTMSVNGGKMPVWEPTLKLLNLDLDFKHTAFTEFSWKTLLADYIPVYLPWGRKFVISVGDILVFIGVFIFFVLKPRFQTQPSRVPHES", "sequence_length": 168, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "84f6294186b124430ed76a4228271f8d5c9f79e7415293114592c99cc5393ff1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P58010.json", "taxon_id": "243274", "uniprot_accession": "P58010", "uniprot_release": "2026_03" } ], "pfam_id": "PF17248", "short_name": "DUF5317", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5318-pf17249.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17249", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5318-pf17249.yaml" } ], "pfam_ids": [ "PF17249" ], "protein_name": "Uncharacterized protein Mb0050", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDYTLRRRSLLAEVYSGRTGVSEVCDANPYLLRAAKFHGKPSRVICPICRKEQLTLVSWVFGEHLGAVSGSARTAEELILLATRFSEFAVHVVEVCRTCSWNHLVKSYVLGAARPARPPRGSGGTRTARNGARTASE", "sequence_length": 137, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc712086c4f9a2c4148704db8b8e3eda6853df3616cba9d04fe47c692b4138c0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64678.json", "taxon_id": "233413", "uniprot_accession": "P64678", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5318-pf17249.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17249", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5318-pf17249.yaml" } ], "pfam_ids": [ "PF17249" ], "protein_name": "Uncharacterized protein MT0055", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDYTLRRRSLLAEVYSGRTGVSEVCDANPYLLRAAKFHGKPSRVICPICRKEQLTLVSWVFGEHLGAVSGSARTAEELILLATRFSEFAVHVVEVCRTCSWNHLVKSYVLGAARPARPPRGSGGTRTARNGARTASE", "sequence_length": 137, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc712086c4f9a2c4148704db8b8e3eda6853df3616cba9d04fe47c692b4138c0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM84.json", "taxon_id": "83331", "uniprot_accession": "P9WM84", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5318-pf17249.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17249", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5318-pf17249.yaml" } ], "pfam_ids": [ "PF17249" ], "protein_name": "Uncharacterized protein Rv0049", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDYTLRRRSLLAEVYSGRTGVSEVCDANPYLLRAAKFHGKPSRVICPICRKEQLTLVSWVFGEHLGAVSGSARTAEELILLATRFSEFAVHVVEVCRTCSWNHLVKSYVLGAARPARPPRGSGGTRTARNGARTASE", "sequence_length": 137, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc712086c4f9a2c4148704db8b8e3eda6853df3616cba9d04fe47c692b4138c0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WM85.json", "taxon_id": "83332", "uniprot_accession": "P9WM85", "uniprot_release": "2026_03" } ], "pfam_id": "PF17249", "short_name": "DUF5318", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5319-pf17252.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5319-pf17252.yaml" } ], "pfam_ids": [ "PF17252" ], "protein_name": "Uncharacterized protein Mb3446", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRDHLPPGLPPDPFADDPCDPSAALEAVEPGQPLDQQERMAVEADLADLAVYEALLAHKGIRGLVVCCDECQQDHYHDWDMLRSNLLQLLIDGTVRPHEPAYDPEPDSYVTWDYCRGYADASLNEAAPDADRFRRR", "sequence_length": 136, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e281d5cb88d368e0bd6e1fcd09fe4984fcd1c8a6ea4ca5e80f894aa3f071c9a6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P65080.json", "taxon_id": "233413", "uniprot_accession": "P65080", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5319-pf17252.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5319-pf17252.yaml" } ], "pfam_ids": [ "PF17252" ], "protein_name": "Uncharacterized protein MT3521", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRDHLPPGLPPDPFADDPCDPSAALEAVEPGQPLDQQERMAVEADLADLAVYEALLAHKGIRGLVVCCDECQQDHYHDWDMLRSNLLQLLIDGTVRPHEPAYDPEPDSYVTWDYCRGYADASLNEAAPDADRFRRR", "sequence_length": 136, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e281d5cb88d368e0bd6e1fcd09fe4984fcd1c8a6ea4ca5e80f894aa3f071c9a6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKY8.json", "taxon_id": "83331", "uniprot_accession": "P9WKY8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium leprae (strain TN)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5319-pf17252.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17252", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5319-pf17252.yaml" } ], "pfam_ids": [ "PF17252" ], "protein_name": "Uncharacterized protein ML0386", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRDHLPPGLPPDPFADDPCDPSAALDAVEPGQPLDQQERIAVEADLADLAVYEALLAHKGIRGLVVCCDECQQDHYHDWDMLRANLLQLLIDGTVRPHEPAYDPEPDSYVTWDYCRGYADASLNQATSDADGYRRRH", "sequence_length": 137, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "17c2bc83fa1f3db8697f080a6ad13434366a4f9beb92e6087c0f52a299943929", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q49742.json", "taxon_id": "272631", "uniprot_accession": "Q49742", "uniprot_release": "2026_03" } ], "pfam_id": "PF17252", "short_name": "DUF5319", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5320-pf17253.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17253", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5320-pf17253.yaml" } ], "pfam_ids": [ "PF17253" ], "protein_name": "Uncharacterized protein AF_0667", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRCMRGGWGRGWKRRCYSTGKPGWMRYESERDEKLRMLERMRDELEAELEEIKREIERLRR", "sequence_length": 61, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "62765787cf986d497aa5258cac6068b1e653228a8a393c37bcb0bcdc6142decd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O29590.json", "taxon_id": "224325", "uniprot_accession": "O29590", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5320-pf17253.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17253", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5320-pf17253.yaml" } ], "pfam_ids": [ "PF17253" ], "protein_name": "Uncharacterized protein AF_2392", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPWWMPGWGGRGWRWWYRATGLPGWMRCRWWGYRDHPWDYPPYPPYPPALRPEDELEMLEAMKEDLEAELEDIKKRIEELKRELGK", "sequence_length": 86, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1a0348059b68832486b2a3fc5a5d69f8fe900b5d74c8b64c6ce685c2c8b0e42e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O30279.json", "taxon_id": "224325", "uniprot_accession": "O30279", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5320-pf17253.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17253", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5320-pf17253.yaml" } ], "pfam_ids": [ "PF17253" ], "protein_name": "Uncharacterized protein AF_2391", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGGDRTGPWGQGPRTGRRAGFCSGYRMPGFMNRSVWPPFGGRWFRWFGRRFWGRRAGRAGRGRWW", "sequence_length": 66, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7021d880e720cd0dcbfbd6044914258197887b9dbcb7c61549b121c28c773e62", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O30280.json", "taxon_id": "224325", "uniprot_accession": "O30280", "uniprot_release": "2026_03" } ], "pfam_id": "PF17253", "short_name": "DUF5320", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17254", "short_name": "DUF5321", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterococcus faecalis (strain ATCC 700802 / V583)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ebsa-pf17255.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17255", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ebsa-pf17255.yaml" } ], "pfam_ids": [ "PF17255" ], "protein_name": "Protein EbsA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKQKFYWQPELASTIIYWSCTFCILFISLILALENNGPYLISNLVMVPFFVFAYLGIARSFNMTETSLIVRDVLWFRKKALPLSQIEKVTYNEKSIEIFSSEFKEGSKVFLMKKKTIPLFLEALKVKKPELKVAEDHSLGLHKKEEKNKSES", "sequence_length": 153, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6812fdf7f68fa0b0a8c5fa6bd76fa13a5abb368387024a55cae8974fbdccaa06", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P36920.json", "taxon_id": "226185", "uniprot_accession": "P36920", "uniprot_release": "2026_03" } ], "pfam_id": "PF17255", "short_name": "EbsA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pisum sativum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5323-pf17257.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5323-pf17257.yaml" } ], "pfam_ids": [ "PF17257" ], "protein_name": "Large ribosomal subunit protein cL38", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASVSSIFGCGVSMAPNSSLRNKAIRTERRSACGGLLIECSSRPQKKSTAHHMKTRPRKSRLSDRNRKPTVYAPLPPLPPDFTIVIPADASTVDFTPPPPTPSD", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "62dbbe124db3d548ebf3da96ad228ff9ea094a294648dcb59b24aa89e6a3e1d8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P11892.json", "taxon_id": "3888", "uniprot_accession": "P11892", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Spinacia oleracea", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5323-pf17257.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5323-pf17257.yaml" } ], "pfam_ids": [ "PF17257" ], "protein_name": "Large ribosomal subunit protein cL38", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHMKTRPKKTARWDIKRGPAVYPPLPPLPAEWTIVSSAVDEADSSSSTTSSSAEIAQSA", "sequence_length": 116, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d6988a860482f6d07c9ac3c133206de492da688cf30beebc3b15ff87a0601be4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P82411.json", "taxon_id": "3562", "uniprot_accession": "P82411", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5323-pf17257.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5323-pf17257.yaml" } ], "pfam_ids": [ "PF17257" ], "protein_name": "Large ribosomal subunit protein cL38", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKTQPWDIKRKPTVYAPLPPLPAEWSPFTLASDDGGAATAAGDLVSGAA", "sequence_length": 106, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6ab44e857f47a0da13b57cc21c33156a477cdcf07c0636c28e45841e61c36b14", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FKP0.json", "taxon_id": "3702", "uniprot_accession": "Q9FKP0", "uniprot_release": "2026_03" } ], "pfam_id": "PF17257", "short_name": "DUF5323", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces actuosus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5324-pf17258.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5324-pf17258.yaml" } ], "pfam_ids": [ "PF17258" ], "protein_name": "Putative nosiheptide resistance regulatory protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTRIDSVRAATGSAKDSVLHAAEVVAPYADTAKERAAHYAHEARVRLAPKVTLAAEQARVQYGAHLAPRLEQARTHVPPKVELAAQEAALRTRKAARQAADYSRPMIEQAVAAAGPVRDEAATRAAAALVALRGQVTAEDIQKLVRKHERRARTGRAVRMLAVLGLVAGGAFAAWKWWDKQANPDWLVEPPEATEVPESGRLTSVDGSAEAVLDPEVQAKEAAEEAAKRDDQA", "sequence_length": 233, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5e2bd8bee94f2141b70a0d5abb540867c478ce7d33acd8c187705b409d25cef8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P52392.json", "taxon_id": "1885", "uniprot_accession": "P52392", "uniprot_release": "2026_03" } ], "pfam_id": "PF17258", "short_name": "DUF5324", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5325-pf17259.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17259", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5325-pf17259.yaml" } ], "pfam_ids": [ "PF17259" ], "protein_name": "Uncharacterized protein YlaF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKMNWLLLLFAFAAVFSIMLIGVFIAEKSPAGIIASIVLVCAVMGGGFTLKKKMREQGLLD", "sequence_length": 62, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "97155d071110d394c774112d0b6ff552589b219044a1849d482a138908af1abb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O07630.json", "taxon_id": "224308", "uniprot_accession": "O07630", "uniprot_release": "2026_03" } ], "pfam_id": "PF17259", "short_name": "DUF5325", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5326-pf17260.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17260", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5326-pf17260.yaml" } ], "pfam_ids": [ "PF17260" ], "protein_name": "Uncharacterized protein SCO3924", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MREIFTGLPWWVKWIAVPVIALVVFGGLIVSVVGFVVGLLFKLLVFVALVGGLIYVVRKFMSSSSSRSDW", "sequence_length": 70, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3856afe7843ad09bf606262e527eb2e0006a0ae49aac9dcd12be1eb78aefa657", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q53866.json", "taxon_id": "100226", "uniprot_accession": "Q53866", "uniprot_release": "2026_03" } ], "pfam_id": "PF17260", "short_name": "DUF5326", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5327-pf17261.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17261", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5327-pf17261.yaml" } ], "pfam_ids": [ "PF17261" ], "protein_name": "Uncharacterized protein YwdI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIHISALIQKMEEELKKAKTAERDEELKRYVAVVRSLCDVVLDQPENASAPRIQPSVTPSPAAPPSTDQLMMEKMMGSAGLNKYRKQEKEKQEEDGNGESLFDF", "sequence_length": 105, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2c004776f9c365ff82480f75bbd208c866ba0bdcd18f75250957c07e4cc027b3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P39617.json", "taxon_id": "224308", "uniprot_accession": "P39617", "uniprot_release": "2026_03" } ], "pfam_id": "PF17261", "short_name": "DUF5327", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cas6b-c-terminal-domain-ipr020209.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR020209", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cas6b-c-terminal-domain-ipr020209.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cas6b-c-pf17262.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17262", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cas6b-c-pf17262.yaml" } ], "pfam_ids": [ "PF17262" ], "protein_name": "Uncharacterized protein MJ0978", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGEIILNIRELNLKGEVYRVVNGYAKVKFEEFGVAENMIKYKFISPWIALNEKNYLEYKELDEDGKKELLEKILVGNILSMSKYLDYTVEEKLKAGLLEYEDFVVKYKGNKFIGFWGEFLVNFNIPNYLGIGRKVSKGFGSVIRVEE", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "06f8ab7043bb03a686bfbe427c21e5802b0ea98ba5cc0e1e34fe1742734ced7b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58388.json", "taxon_id": "243232", "uniprot_accession": "Q58388", "uniprot_release": "2026_03" } ], "pfam_id": "PF17262", "short_name": "Cas6b_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5329-pf17263.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17263", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5329-pf17263.yaml" } ], "pfam_ids": [ "PF17263" ], "protein_name": "Uncharacterized protein YfeK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKIVCAVVALLLTLPAWANVNAHEEARINAMLNALAQKKDLTFVRNGDAHNCEEAVSHLRLKLGNTRNRIDTAEQFIDKVASSSSITGKPYIVKIPGKSDENAQPYLHALIAETDKNVE", "sequence_length": 120, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "35d24ed1d84ce9a17edb5129464b4f49b4f1386798d900eaab2c0a6337d026c2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P40195.json", "taxon_id": "99287", "uniprot_accession": "P40195", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/hypothetical-protein-nf007646.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF007646", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/hypothetical-protein-nf007646.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5329-pf17263.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17263", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5329-pf17263.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q47702", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF17263" ], "protein_name": "Uncharacterized protein YfeK", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "71b8d4f804c01e877f0a43c7e18c906d1fe652a4556cdfbef69ba6bd894709b2", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKKIICLVITLLMTLPVYAKLTAHEEARINAMLEGLAQKKDLIFVRNGDEHTCYEAVSHLRLKLGNTRNRIDTAEQFIDKVASSSSITGKPYIVKIPGKSDENAQPFLHALIAQTDKTVPAEGN", "sequence_length": 124, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "71b8d4f804c01e877f0a43c7e18c906d1fe652a4556cdfbef69ba6bd894709b2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q47702.json", "taxon_id": "83333", "uniprot_accession": "Q47702", "uniprot_release": "2026_03" } ], "pfam_id": "PF17263", "short_name": "DUF5329", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhizobium meliloti (strain 1021)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5330-pf17264.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5330-pf17264.yaml" } ], "pfam_ids": [ "PF17264" ], "protein_name": "Uncharacterized protein R01001", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWFLVKATFWFSLVLVLLPFLDPSSSEKLEHGPKMEIGGTFSAANEAIQYISAICVEKPDVCEKGAETFVALGHRAREGARIAYEFLNTQFAEGDAAAPDVKVMTGTVTPAESVPSAEATEKAEPAFKRMPVPEHRLDPGPASGK", "sequence_length": 145, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5cac39f8bb7410effca6af47c6fe552945082464c9ef11d8878e6e4522258108", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q52968.json", "taxon_id": "266834", "uniprot_accession": "Q52968", "uniprot_release": "2026_03" } ], "pfam_id": "PF17264", "short_name": "DUF5330", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Leptolyngbya boryana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5331-pf17265.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17265", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5331-pf17265.yaml" } ], "pfam_ids": [ "PF17265" ], "protein_name": "Uncharacterized 15.3 kDa protein in frxC 3'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIDQLRRSLKDRWLDYYEANRSWISRLSIWVSCEGKRRPSSSFILGVLSTEEPRLTEMLPLIVDLSNHPDRIVVALGLNFDPEQELNHKQLKAETPKYLPASSATEAPQKPRRPAEVDEACEGRNRTTPSPQ", "sequence_length": 133, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f05f46c65a2fd648a29d9f189197b5601cdc6e15c496709cd3c22935cf01f11c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q00247.json", "taxon_id": "1184", "uniprot_accession": "Q00247", "uniprot_release": "2026_03" } ], "pfam_id": "PF17265", "short_name": "DUF5331", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis briggsae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5332-pf17266.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5332-pf17266.yaml" } ], "pfam_ids": [ "PF17266" ], "protein_name": "Protein dct-5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGIFLGLVDSSSPKSSTSCSLMTSCAVEKCLNKDMVRKIVIESSREEVFGNLVEKFDMVCIAAKCGNECSQCKHCHYALEQMSALAQGEKTSGLCPKLETCVFNCLTEDVSKVLSCVATRCNVHCYDGDCPSCKMISRRIFSTICKQHSMTSQPQIKYEGTCPNLFMELADHYVAKKKL", "sequence_length": 179, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "229836fdbbd4f75f247b303005e73354cbf1d486d5321e82958f7a863a4e7c68", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A8WUE9.json", "taxon_id": "6238", "uniprot_accession": "A8WUE9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5332-pf17266.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5332-pf17266.yaml" } ], "pfam_ids": [ "PF17266" ], "protein_name": "Uncharacterized protein C29G2.6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MITDFLLAFSILAVSTTLGVSNLNKQCRDLLQCSIQKKCVNLPVLSKLVDGKNISAEMYDDIDKYTDYGCIFTTGCQDECNDCPLCLTSKLQIVDILSGEKSSAECPTLMDCALKCVAESNQDIFQINKCLRQDCAFHCFDGSCPKCSGFITRVFNQMCAAGNFRQKIKGYSGPCYEMFHEIVRAKFADRFEKNGKTRGHSG", "sequence_length": 202, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "deee7b4fc7e6dd68ae13868868e63c4630c644bbad2ee617ee1f3645f76495ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O16887.json", "taxon_id": "6239", "uniprot_accession": "O16887", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5332-pf17266.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17266", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5332-pf17266.yaml" } ], "pfam_ids": [ "PF17266" ], "protein_name": "Protein dct-5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSERVNYPVKLLNFILSIMNSYLFVLIVSIGFAESSSPKSSTSCSLMTSCAVEKCLDRGMVGRIITESSRDEVFGNLVEKFDMVCIAAKCGNECSQCKHCHYALEQMSALAQGEKTSGLCPKLETCVFNCLTEDVSKVLSCVATRCNVHCYDGDCPSCKMISRRIFSNICKQHSMTTQPQIKYEGTCPNLFMELADDYVAMKKKKL", "sequence_length": 207, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c287290560e837fb04bcfe42be01fc21aa21c84c6e3b89d3a88350f55763a446", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q09304.json", "taxon_id": "6239", "uniprot_accession": "Q09304", "uniprot_release": "2026_03" } ], "pfam_id": "PF17266", "short_name": "DUF5332", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Paracoccus denitrificans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5333-pf17267.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17267", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5333-pf17267.yaml" } ], "pfam_ids": [ "PF17267" ], "protein_name": "Uncharacterized 14.7 kDa protein in nqo3 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLIPAALIAATLATPAAALEPLSQEKYINDRLIAARIADRIRRTCPSIDGRILYAYGEARKLKRYAESKGYSRAEIDAFLDSRPDKQRIYAVAEDYLTRQGAKAAEPESFCRIGRQEIARNTVIGSLLVAK", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "47592b08911e01f352ab98be56a3fbad2af0ef2817efe129017f94323fc0e1a1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P29909.json", "taxon_id": "266", "uniprot_accession": "P29909", "uniprot_release": "2026_03" } ], "pfam_id": "PF17267", "short_name": "DUF5333", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17268", "short_name": "DUF5334", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aquifex aeolicus (strain VF5)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5335-pf17269.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17269", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5335-pf17269.yaml" } ], "pfam_ids": [ "PF17269" ], "protein_name": "Uncharacterized protein aq_1176", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATKAIPKEQWEKYFDNLSKNLPAVEVQLEVVDKEIGDQVEVEYSPLLGLSYDPKDDVFEIQFRETHDHLIYHPKEIYVEEEDGKITTIEVVDKEGTRYILRIKPAIPLPE", "sequence_length": 111, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ab56bf6dd37efbb657416ec2376d85ebab218cbbed7d8dcf77906f44a6e59c29", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O67237.json", "taxon_id": "224324", "uniprot_accession": "O67237", "uniprot_release": "2026_03" } ], "pfam_id": "PF17269", "short_name": "DUF5335", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17270", "short_name": "MAP_0900", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Paracoccus denitrificans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5337-pf17272.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17272", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5337-pf17272.yaml" } ], "pfam_ids": [ "PF17272" ], "protein_name": "Uncharacterized 9.3 kDa protein in nqo2 3'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARPAGHAASQAGGTAAADARQMRLVAAVIAVTMALWLGVQWLGGQQDWPAKYAFLADLAAIGALIWSLLVTFRIWRRRKASSQGQG", "sequence_length": 87, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d315610de173c8bd3cc9043089bec53d0095c46adc644e37425d7da7d7075358", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P29907.json", "taxon_id": "266", "uniprot_accession": "P29907", "uniprot_release": "2026_03" } ], "pfam_id": "PF17272", "short_name": "DUF5337", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5338-pf17273.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17273", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5338-pf17273.yaml" } ], "pfam_ids": [ "PF17273" ], "protein_name": "Protein TraK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKTYPEELAEWVKGREAKKPRQDKHVVAFLAVKSDVQAALDAGYAMKTIWEHMKETGRLRCRYETFTQHVKRYIKAAPVASPPPPATPPDSQPKGAKPEPKAAPPASESKSEPPKIGGFTFDATPKKEDLL", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "40da24fc1d93d48ede93c937b8e2cce10dbc088a6884932534c5f7784d52e1e7", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P17908.json", "taxon_id": "562", "uniprot_accession": "P17908", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5338-pf17273.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17273", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5338-pf17273.yaml" } ], "pfam_ids": [ "PF17273" ], "protein_name": "Protein TraK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKSYTDELAEWVESRAAKKRRRDEAAVAFLAVRADVEAALASGYALVTIWEHMRETGKVKFSYETFRSHARRHIKAKPADVPAPQAKAAEPAPAPKTPEPRRPKQGGKAEKPAPAAAPTGFTFNPTPDKKDLL", "sequence_length": 134, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2999d73aa4ee45cb48b9b74f3bb0ae7ebeeb07658b15d85f29fc81a57b86ab37", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P17910.json", "taxon_id": "562", "uniprot_accession": "P17910", "uniprot_release": "2026_03" } ], "pfam_id": "PF17273", "short_name": "DUF5338", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5339-pf17274.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17274", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5339-pf17274.yaml" } ], "pfam_ids": [ "PF17274" ], "protein_name": "Uncharacterized protein HI_0310", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKITLFFTALLCLFSTSVLAESNSIPKQCEQLFKETENLIAQAEKQPGTHIQVNKIKSKLNQSKQQILQMELATQLKSCEVGLAKLSNLKSYSE", "sequence_length": 95, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e39395860ef19d60e3fccae6a6941975f0bf960c3c09b3cd2ba6a5ce21a94de7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P43982.json", "taxon_id": "71421", "uniprot_accession": "P43982", "uniprot_release": "2026_03" } ], "pfam_id": "PF17274", "short_name": "DUF5339", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Anabaena cylindrica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5340-pf17275.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17275", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5340-pf17275.yaml" } ], "pfam_ids": [ "PF17275" ], "protein_name": "Uncharacterized 9.3 kDa protein in soluble hydrogenase 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEQLPLPAPIHYELILQLLEKQTMNAVSQNSDLQHQVSQLIVTLRKAASQQKRLEENCQASAVTVDHRWSLNHHGGKVITPD", "sequence_length": 82, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4ad709c6dae8a5db47e604ac6b7555598fdb226c085a085ddb3e53786b25d8ac", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P16420.json", "taxon_id": "1165", "uniprot_accession": "P16420", "uniprot_release": "2026_03" } ], "pfam_id": "PF17275", "short_name": "DUF5340", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5341-pf17276.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17276", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5341-pf17276.yaml" } ], "pfam_ids": [ "PF17276" ], "protein_name": "Uncharacterized protein YER187W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLIDQIVAAVPGVPDISGNASALSLQRRSQEFATSWISMTYSQSYGDLAQNWQNDEGGAGNFDSYAEEKLQNFFSGNRDWKYCFAAEDTKNGEPLDYDDIPGDGAGTGSAFKSEIYFNTYGGIDNYCNDEHIGAQNTGDGR", "sequence_length": 141, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb886ba0686aa47e05d8b089f36c71ebcc36ef6da8df25a2a311a892cedf6473", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40102.json", "taxon_id": "559292", "uniprot_accession": "P40102", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5341-pf17276.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17276", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5341-pf17276.yaml" } ], "pfam_ids": [ "PF17276" ], "protein_name": "Putative uncharacterized protein YGL262W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNNVTELVNSIIGVQTPGSLPDTLSGAHSLQRRISYFDVNWISWNWDNVNVDLNKEVKKSRPLLGEEDDQCMFGWFANNPGWKYYWSVTDNPDPGYKENYSDIGDENAVHGELYFNTYGGLMASVMTTKMVLNAKRQLVVIDTIVVKAICDYVMKYWKKKVNLTTISLYLMLKL", "sequence_length": 175, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0eb9110ce17540c4a1ae44e003cfc1ab75ce90997a972d17db40b24f049bc2cf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P53054.json", "taxon_id": "559292", "uniprot_accession": "P53054", "uniprot_release": "2026_03" } ], "pfam_id": "PF17276", "short_name": "DUF5341", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5342-pf17277.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17277", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5342-pf17277.yaml" } ], "pfam_ids": [ "PF17277" ], "protein_name": "Uncharacterized protein YheE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAVMISHFSWKPLFPKEKLPGWKISFYYKGTHYEGIYHKSGEIEWGDLFPARADEPALTNEIHELMLFHIYD", "sequence_length": 72, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fa2804af016933eef5148c13e0abfd7161f9b1100c0a52c2d6c720d8fcb19238", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O07546.json", "taxon_id": "224308", "uniprot_accession": "O07546", "uniprot_release": "2026_03" } ], "pfam_id": "PF17277", "short_name": "DUF5342", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5343-pf17278.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17278", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5343-pf17278.yaml" } ], "pfam_ids": [ "PF17278" ], "protein_name": "Uncharacterized protein AF_1681", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFLVNNIRCSNMAEFPYTTVPGKIKPFFQKIQEAGLPSKVTQKWINSIGFTSSNDPSIIPLLKKLGFIDRSGVPTELWARYRDKDLAPKVMAEAIKNAYKELFETYPDAYRKDKEALRNFFASQTGKAENTIEKMIQTFKALCELADFESNSEEYPHNEVVPSREGLTTLMEKQTPKGLTINVNIQLQLPATTDEEVYDKLFRSLKRNLLSE", "sequence_length": 212, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c0d237f47f564ea74f50402b3bda854a4000b81a62768f4c7bbc09731d5744f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O28592.json", "taxon_id": "224325", "uniprot_accession": "O28592", "uniprot_release": "2026_03" } ], "pfam_id": "PF17278", "short_name": "DUF5343", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5344-pf17279.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17279", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5344-pf17279.yaml" } ], "pfam_ids": [ "PF17279" ], "protein_name": "Protein YxiC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQEIKMVYDTVKQGLSQLKNSAELKSSLPGHLSGRNHLNVVKSIEQLNKDIKELTEAYASVLAKHIAQTESAVNAMKETDENISSSMK", "sequence_length": 89, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c4df2ec93669cc35049f2608adfb063ae223817bfbb3761d2f9148c312be3482", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P42295.json", "taxon_id": "224308", "uniprot_accession": "P42295", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5344-pf17279.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17279", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5344-pf17279.yaml" } ], "pfam_ids": [ "PF17279" ], "protein_name": "Protein YwqI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEIKLKYDTVIKTLDSVKDALADVSIGAAGSNGKNSLDYTKKYHEREENIKTMLGDYKKAVQKNIEDTKDNVDSLKEQDEAIAVK", "sequence_length": 86, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "561324d8972f0047f367eb813ca01e7b1c8a8f7ba1fe3ccb44601456d70ae065", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P96721.json", "taxon_id": "224308", "uniprot_accession": "P96721", "uniprot_release": "2026_03" } ], "pfam_id": "PF17279", "short_name": "DUF5344", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5345-pf17280.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17280", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5345-pf17280.yaml" } ], "pfam_ids": [ "PF17280" ], "protein_name": "Uncharacterized protein YxlC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKEKLSDHLKSEWKKIDQTANPSIPNQKELLHQLSQMKAEYRKKLLQEIILFVFCALMVVSAAILAFTQAPAVFIVLQVCVLAVLPILIAAEKKRHLGECEVKRG", "sequence_length": 106, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "64e2365091db541eef6d353d3b23cc110c98d00b4f5ad9e73d30377658ee9955", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P94371.json", "taxon_id": "224308", "uniprot_accession": "P94371", "uniprot_release": "2026_03" } ], "pfam_id": "PF17280", "short_name": "DUF5345", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5346-pf17281.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17281", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5346-pf17281.yaml" } ], "pfam_ids": [ "PF17281" ], "protein_name": "Uncharacterized protein T25E4.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFGKILTTSLLIAMTFAAPSTEEGKSSKRRQYIAPLAGAAQVPRNPLFFAAPALPVAAAPALVRPAFAPVPVAAAPAFAPVPVAAPMVRPMLQQPAIVAPVAPVVAPVGQCPGGPSLPIECDPKRPWPQCPPQSYCYATNSVDIGPYFCCPIWSTYGAAWRPATPFYNYVPPVPANWPDVARMTANWPAAAVAMPLKARKQQKNEGDDEETEDEQKIGSAIDGWVERQAKL", "sequence_length": 231, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3d0d247ee097f7bb48f458c4acd898dd090bbb051018cf81e70a58b43a7d3fce", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q10014.json", "taxon_id": "6239", "uniprot_accession": "Q10014", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5346-pf17281.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17281", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5346-pf17281.yaml" } ], "pfam_ids": [ "PF17281" ], "protein_name": "Uncharacterized protein D2096.6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFSKLFTTSCLVAIALTTAQEEVSGKVSSTKRRQYVAAQQPAVPVVAPVGQCPGGPSLPIECDPKRPWPQCPPQSYCYATNSVDIGPYFCCPVWSTYGAAWRPATPFYNYVPPVPANWPDVAKMTANWPAAAVSVPVKARKPTKSDDEEEEVGKMGGISSSINSWVQRQKL", "sequence_length": 171, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1d1def1f5d8a169221f8edc8cdc729dce1b984dd673d68641b0cc2f7050bb415", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q19005.json", "taxon_id": "6239", "uniprot_accession": "Q19005", "uniprot_release": "2026_03" } ], "pfam_id": "PF17281", "short_name": "DUF5346", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5347-pf17282.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17282", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5347-pf17282.yaml" } ], "pfam_ids": [ "PF17282" ], "protein_name": "Protein ORFc in retron Ec67", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIEGAAATVPLSPGERLNGLNHIAELRAKVFGLNIESELERFIKDMRDPRDINNEQNKRALAAIFFMAKIPAERHSISINELTTDEKRELIKAMNHFRAVVSLFPRRLTMPN", "sequence_length": 113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7a332ccf0e81d61df06c53cf511892837ea6de9632dac8c025f9d778e11e6973", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P62534.json", "taxon_id": "562", "uniprot_accession": "P62534", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5347-pf17282.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17282", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5347-pf17282.yaml" } ], "pfam_ids": [ "PF17282" ], "protein_name": "Uncharacterized protein ORFC-like in prophage region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAIEGAAATVPLSPGERLNGLNHIAELRAKVFGLNIESELERFIKDMRDPRDINNEQNKRALAAIFFMAKIPAERHSISINELTTDEKRELIKAMNHFRAVVSLFPRRLTMPN", "sequence_length": 113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7a332ccf0e81d61df06c53cf511892837ea6de9632dac8c025f9d778e11e6973", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P62535.json", "taxon_id": "199310", "uniprot_accession": "P62535", "uniprot_release": "2026_03" } ], "pfam_id": "PF17282", "short_name": "DUF5347", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17295", "short_name": "DUF5348", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5349-pf17298.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17298", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5349-pf17298.yaml" } ], "pfam_ids": [ "PF17298" ], "protein_name": "Uncharacterized protein YBL081W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGQIISIPFLSQNEDMDKYLLEYRSLKLLHQSSNSFQSHNAPSHQSNYHPHYNHMKYNNTGSYYYYNNNNNSSVNPHNQAGLQSINRSIPSAPYGAYNQNRANDVPYMNTQKKHHRFSANNNLNQQKYKQYPQYTSNPMVTAHLKQTYPQLYYNSNVNAHNNNNNSNNNNNNNNNSNNNNNLYNQTQFSTRYFNSNSSPSLTSSTSNSSSPYNQSTFEYILPSTSAASTNLSSSSSNNSMHTNPTTATSTSADLINDLPVGPTSSSLISDLHSPPTVSFLPASQTLLMSSTTSSSIGTNINPPQHSPSPSQREDFSTAPVNMSSSASLLMNDSSLGWGSNHMNVSSSSQPASSRPFGIWNTDMSVWS", "sequence_length": 368, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d042ba98350f0223797d7f1b9a2b1d7384ba9ee5497e8e28db7447c797878e82", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38180.json", "taxon_id": "559292", "uniprot_accession": "P38180", "uniprot_release": "2026_03" } ], "pfam_id": "PF17298", "short_name": "DUF5349", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5350-pf17299.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17299", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5350-pf17299.yaml" } ], "pfam_ids": [ "PF17299" ], "protein_name": "Uncharacterized protein AF_2193", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKTGSVTWVKIKKRNSNEYRLVPTKWQDYKKPGPNQKYTSDGKKRRRIRRSQKSILGVRS", "sequence_length": 61, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b911ba1bf64371cd1c079f95bfcd83131ae3ea47bde7bfd8a37d07e544a6a5e1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O28090.json", "taxon_id": "224325", "uniprot_accession": "O28090", "uniprot_release": "2026_03" } ], "pfam_id": "PF17299", "short_name": "DUF5350", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Solanum lycopersicum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5351-pf17302.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5351-pf17302.yaml" } ], "pfam_ids": [ "PF17302" ], "protein_name": "Protein SPA, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNSYPCIKAVDLDQNTVIAITVGVLSVAIGVGIPVFYETQIDNAAKRENTQPCFPCTGTGAQKCRFCMGTGSVTVELGGGETEVSRCINCDGAGGLTCTTCQGSGIQPRYLDRREFKDDD", "sequence_length": 159, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ced770076518b8fe61cc8ee756b3633d5a6bdd59ed9236a15ffb977d98ed0929", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/K4BVL1.json", "taxon_id": "4081", "uniprot_accession": "K4BVL1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5351-pf17302.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5351-pf17302.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/6-20-20-10-6-20-20-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:6.20.20.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/6-20-20-10-6-20-20-10.yaml" } ], "pfam_ids": [ "PF17302" ], "protein_name": "Uncharacterized protein YuiA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTATTTASHACPFCSGKGYFQLILGGSETCPSCQGTGKDSHSFSSR", "sequence_length": 47, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9e74b028dd57e1bc35617f00775cc226c6c177f158256f0adaeda8f9ba967158", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O32110.json", "taxon_id": "224308", "uniprot_accession": "O32110", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5351-pf17302.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5351-pf17302.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/heat-shock-protein-dnaj-cysteine-rich-domain-superfamily-ipr036410.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR036410", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/heat-shock-protein-dnaj-cysteine-rich-domain-superfamily-ipr036410.yaml" } ], "pfam_ids": [ "PF17302" ], "protein_name": "Protein disulfide-isomerase LQY1, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPVSAPSPPRLHSPFIHCPINFTPSSFSARNLRSPSTSYPRIKAELDPNTVVAISVGVASVALGIGIPVFYETQIDNAAKRENTQPCFPCNGTGAQKCRLCVGSGNVTVELGGGEKEVSNCINCDGAGSLTCTTCQGSGVQPRYLDRREFKDDD", "sequence_length": 154, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3a163488f6fc230da83838f2ad3e30613b749ebc3cf1987802b19b8d67c78e5f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8GSJ6.json", "taxon_id": "3702", "uniprot_accession": "Q8GSJ6", "uniprot_release": "2026_03" } ], "pfam_id": "PF17302", "short_name": "DUF5351", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5352-pf17303.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17303", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5352-pf17303.yaml" } ], "pfam_ids": [ "PF17303" ], "protein_name": "Uncharacterized protein ZK1320.2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLLLLACLAVPAIFAQQTSAPGGNLCNYTPVGDESTQDAVPIQDFRSSGLDFVRPNWCITHCADRKSVKVAARFQFANQSTAVPTYNVRRHYTRKSGVKVHAELISGTPTKRDDDDFNFCIDDTVSATIDTVVKTYNDIETMSEALNFYINKPGWAYVIYDMGVPPSVIGTDNVKQDMNYCEKFAQKQMPDGTWGLYQVFAGLIKAN", "sequence_length": 208, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "19a8b5f4ca4ac9a53f0c44cdc03d324b68794ca2e894ffcdb09c148d5711e7d7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q09364.json", "taxon_id": "6239", "uniprot_accession": "Q09364", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5352-pf17303.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17303", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5352-pf17303.yaml" } ], "pfam_ids": [ "PF17303" ], "protein_name": "Uncharacterized protein ZK1320.3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFLLIACLAVPAILAQQTSAPGGNLCTYPPQGDESNQKAVPIQDFRTSGLDFVRPNWCITHCADRKSVKAAVRFQFANQSTAVPTYKVRRTFTRYSGMKVHAELISGNPTKRDDDPFNFCMDDAVSAQIDTIVNTYNDIETMSEALNFYINKPGWAYIIYDMGVPPSIIETDNVKHDMNYCEKSSNKQMPDGTYMTYQVFAGLIKAN", "sequence_length": 208, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87450a65df1d3be4ae35989e625afde6afa6898dc630c8e9186c976021b60d89", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q09365.json", "taxon_id": "6239", "uniprot_accession": "Q09365", "uniprot_release": "2026_03" } ], "pfam_id": "PF17303", "short_name": "DUF5352", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/mitochondrial-inner-outer-membrane-contact-site-go0044289.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0044289", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/mitochondrial-inner-outer-membrane-contact-site-go0044289.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/nascent-polypeptide-associated-complex-binding-go1990593.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1990593", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/nascent-polypeptide-associated-complex-binding-go1990593.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/ribosome-localization-go0033750.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0033750", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/ribosome-localization-go0033750.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mitochondrial-outer-membrane-protein-om14-c-terminal-ipr039453.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR039453", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mitochondrial-outer-membrane-protein-om14-c-terminal-ipr039453.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/om14-c-pf17304.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17304", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/om14-c-pf17304.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSATAKHDSNASPNSDSEDGHHHNNKKECAIEYLKARLNSASAVACGYLQAFVSKTQDFAKVCFLELQNPVVLVNLLLHSSVVCYLCNGYANHNARFLKGKPNSTVLATTAGALGLLTLDGIISKKYYSRYDKK", "sequence_length": 134, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f5339026ec692a8252498181ac13ef8ff353931959649a0d3884e1441f2b673b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P38325.json", "taxon_id": "559292", "uniprot_accession": "P38325", "uniprot_release": "2026_03" } ], "pfam_id": "PF17304", "short_name": "OM14_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { 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"https://rest.uniprot.org/uniprotkb/P53272.json", "taxon_id": "559292", "uniprot_accession": "P53272", "uniprot_release": "2026_03" } ], "pfam_id": "PF17306", "short_name": "DUF5355", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5356-pf17309.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17309", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5356-pf17309.yaml" } ], "pfam_ids": [ "PF17309" ], "protein_name": "Uncharacterized protein C02F5.2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDNKKKEENPSKSDTSISLPPSSTGEALQNYTESEWNASDDPYSAELLNVKKKPNRVNVFSATEKNMETIIVTEESPPQTPLPLKPVVEHHNLARLIQKSCQLLLDKTTPDGTEVQIKLEFPDWRDTA", "sequence_length": 128, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "62b01ca7ff429b0e645723d05cfeeb868b73c283b9c8395a837bc017652664c4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P34279.json", "taxon_id": "6239", "uniprot_accession": "P34279", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5356-pf17309.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", 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"example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5357-pf17310.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17310", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5357-pf17310.yaml" } ], "pfam_ids": [ "PF17310" ], "protein_name": "Uncharacterized protein alr2393", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLLFKDLFGIFKIFEDVYERIRKILIPTTAYSWQTFIYLSVFSWIMSYFATGYIRDIIALCGWLFLIAGTAWYTTDDPLRVPGTFMPVGAVITGFLVSVFAFSNQEDVITSRTIVLWPTISALITAIPEFIEGSDTDSKTRIPKPDARQKIIVLVASCMMISCWLQFYFVLDKWLQEYPSLLAENFGRSTFVITREEQQKIPTNGVVILDRLQPLVEEQIAERPWSEVERWLLEANVRVGQLGREVLDNNLAQYEEKVLWRVEPRVVNNKSGYRLDLLSIWTGPTANPRGYFLRKSCQIDPVATTPINTTTNSRIPEEKKAVAEIQCDRLNKLFSGAAPPQQ", "sequence_length": 343, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "283298931c3c05c8ca221480a3dab165f1150c25b4b1864b057a43a622b04b6f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P46079.json", "taxon_id": "103690", "uniprot_accession": "P46079", "uniprot_release": "2026_03" } ], "pfam_id": "PF17310", "short_name": "DUF5357", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5358-pf17311.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17311", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5358-pf17311.yaml" } ], "pfam_ids": [ "PF17311" ], "protein_name": "Uncharacterized protein HI_0966", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLIATLGMAALLSGCSMFDSQQSAIPAEFAGADYQLSDQHAKQWAIASKQVEQCVYPNLTRILQQHFSKEDSYIHSQYVFFYPLEKIIGEQYVKIIQADEKSMNYASYQFKKFRTRVSNVEPLTKQSCLKLRNEARDDLAAVKGQYKNGMVEVQKNEDGTPKNSDGIATNQNKFFFDIIKWGSMLLL", "sequence_length": 188, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c6bf5f71d1125723b8167318ea15786d7fc43fc77e2a267207f60b0bc59e71c2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44085.json", "taxon_id": "71421", "uniprot_accession": "P44085", "uniprot_release": "2026_03" } ], "pfam_id": "PF17311", "short_name": "DUF5358", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5359-pf17313.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17313", "section": "canonical_examples", "url": 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"source_url": "https://rest.uniprot.org/uniprotkb/O32226.json", "taxon_id": "224308", "uniprot_accession": "O32226", "uniprot_release": "2026_03" } ], "pfam_id": "PF17314", "short_name": "DUF5360", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17318", "short_name": "DUF5361", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5362-pf17319.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17319", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5362-pf17319.yaml" } ], "pfam_ids": [ "PF17319" ], "protein_name": "Uncharacterized protein YwnC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNPETMNKTLISISKWGKATGILFIIMGAITALSGAFFFLIGAVPGVLQIISGIFLMRSAREAGQMAEHNSGQSEDLMLENYAKFVKMQGIYLIVSIAVSILAIIAFFIFLMLGIADGLFSDTYSTY", "sequence_length": 127, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3c37c2f19de41393dcd9a6e7c3d2e30d62400576b19e9c52357088b533e17cde", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P71038.json", "taxon_id": "224308", "uniprot_accession": "P71038", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5362-pf17319.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17319", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5362-pf17319.yaml" } ], "pfam_ids": [ "PF17319" ], "protein_name": "Uncharacterized protein YwnG", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISLDKDENEIEHHNEENSLVEQETAPVGQESRQLSASAVKSLSDIAKWGKISGILLIIMGSLVTLSVLMTVIGAIPGVLLIISGVFLMRSAKAAAEAEGNLTGSAGESMLENYGTFIKMQLFYAASSIVTVLIGIIVAIFVLVVIGIAAFENTPSYDDPDSYYYEDDPVFE", "sequence_length": 172, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b28d20b95442fa2888af65e93e70be4dfec8fbbed8c8b4856d23c0995b25808a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P71042.json", "taxon_id": "224308", "uniprot_accession": "P71042", "uniprot_release": "2026_03" } ], "pfam_id": "PF17319", "short_name": "DUF5362", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5363-pf17320.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17320", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5363-pf17320.yaml" } ], "pfam_ids": [ "PF17320" ], "protein_name": "Uncharacterized protein HI_1257", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTEQAAKPKGWFKRALEKYDNFIKEWGLDQPNCSCVPMSATEDENGNLKKKESSLKK", "sequence_length": 57, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f5658700e4ca8f6496a3cc48d29e9e9dd09c1080a8b0f7f9a9e9bb47ebf16090", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44143.json", "taxon_id": "71421", "uniprot_accession": "P44143", "uniprot_release": "2026_03" } ], "pfam_id": "PF17320", "short_name": "DUF5363", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5364-pf17322.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17322", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5364-pf17322.yaml" } ], "pfam_ids": [ "PF17322" ], "protein_name": "Uncharacterized protein YER034W", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDAFSLKKDNRKKFQDKQKLKRKHATPSDRKYRLLNRQKEEKATTEEKDQDQEQPALKSNEDRYYEDPVLEDPHSAVANAELNKVLKDVLKNRLQQNDDATAVNNVANKDTLKIKDLKQMNTDELNRWLGRQNTTSAITAAEPESLVVPIHVQGDHDRAGKKISAPSTDLPEELETDQDFLDGLL", "sequence_length": 185, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9df13a95de610ca59de84813297d20a0f5b96a2b3f467a143e6d0451f970acf6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P40022.json", "taxon_id": "559292", "uniprot_accession": "P40022", "uniprot_release": "2026_03" } ], "pfam_id": "PF17322", "short_name": "DUF5364", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5365-pf17326.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17326", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5365-pf17326.yaml" } ], "pfam_ids": [ "PF17326" ], "protein_name": "Uncharacterized protein YhcU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARKVIDVRIVNAATAEQESFIKELSMELIHDVFPLYFSELDIQRFKKKGVLSLNNHYYQGTLKEAFQIMACLQMIHIILTKPSPHSDLSDQAIFEKNSKMLNDFGIYFPFAFSDFQKKTNKAFFGQRRLI", "sequence_length": 131, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ef8bfb7d74ec227623134b193f45dfed954f20018121f4d8d2ee036c36f00c3e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P54605.json", "taxon_id": "224308", "uniprot_accession": "P54605", "uniprot_release": "2026_03" } ], "pfam_id": "PF17326", "short_name": "DUF5365", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5366-pf17328.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17328", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5366-pf17328.yaml" } ], "pfam_ids": [ "PF17328" ], "protein_name": "Uncharacterized membrane protein YufK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNTYLTGYFPLIAILLFSSSLSISTSLYALKMLSSFGMYDGMLDYFSEKGIRLALFAAFALLYFMVLSALKLIANTVTELSLLFFANDPEGNNLKKLRMGSMIYLGGGILSFVLLQNVIWIVIWFAVVTLAYFVFTVYRIYSTLSLMSLVGFILLELLFWFTFVIGILFIFIKLYNSIMASLPV", "sequence_length": 185, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c39b83cd76a97122774d8abb4610f8cb24acf0e18a6954ee8c12d5560aebd78", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O05249.json", "taxon_id": "224308", "uniprot_accession": "O05249", "uniprot_release": "2026_03" } ], "pfam_id": "PF17328", "short_name": "DUF5366", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5367-pf17329.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17329", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5367-pf17329.yaml" } ], "pfam_ids": [ "PF17329" ], "protein_name": "Uncharacterized protein YnzE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLTDPAEEAFLPNFLLLGAGTALVLCLVFFLYQKLDQSQFAVIKLGIWGSAVGLLMDTISLWNLPLIFPALSKGQVIAFTIWMVCAYCMYLLIPLILSHKK", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "643077662cea134d66980181c2fd81816e8824b1cfce65c153127d75a1bbd0da", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34356.json", "taxon_id": "224308", "uniprot_accession": "O34356", "uniprot_release": "2026_03" } ], "pfam_id": "PF17329", "short_name": "DUF5367", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus anthracis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5592-pf17332.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17332", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5592-pf17332.yaml" } ], "pfam_ids": [ "PF17332" ], "protein_name": "Uncharacterized protein pXO2-11/BXB0010/GBAA_pXO2_0010", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEMMRNPKNTKQEIKLAFFYIIDGAIIALMLVLASYMPKVVPVGGFGRIMFYVLFGTFGLFLCIKPHNSPTNRNIFVILDMLKMDNKNYHPIEVNTISSETKRK", "sequence_length": 104, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a74730e0d0656b03b6b593f34df1df8ea68cfc06d369c228f3a53a0842dd8479", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RN21.json", "taxon_id": "1392", "uniprot_accession": "Q9RN21", "uniprot_release": "2026_03" } ], "pfam_id": "PF17332", "short_name": "DUF5592", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pasteurella multocida (strain Pm70)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5368-pf17336.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17336", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5368-pf17336.yaml" } ], "pfam_ids": [ "PF17336" ], "protein_name": "Uncharacterized protein PM1478", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKEFQFDTLWAVMQIMLGAFFWPALIVIILTIAAFCYLLIKEKGLVACRLKGSSLVGLLGGILALYLLFSISQASISDIGGPIDLILVVLAYFGGFLASTMLLYSIIGFVKPRSCACQKN", "sequence_length": 120, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5d09c8239d84aaf69c4aaad20d4dc6fc51098aefbc7e49b2dadff96691912f03", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CKX3.json", "taxon_id": "272843", "uniprot_accession": "Q9CKX3", "uniprot_release": "2026_03" } ], "pfam_id": "PF17336", "short_name": "DUF5368", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/ph-15-domain-ipr040443.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040443", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ph-15-domain-ipr040443.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ph-15-pf17339.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17339", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ph-15-pf17339.yaml" } ], "pfam_ids": [ "PF17339" ], "protein_name": "Uncharacterized protein C15H7.4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCSVKPKYISLPEQNSLCSLPNSGCCQVEVKIGRSKWEQQKAILVKVDGEPAGKIFIYSQPLIGQMYPLHELKSMGVICEKAGDFLVNLVTERGLKLTFKPIGSTANCFVTALVSGNFTSLTHETHIKTPLQNQEATTSPTIESDLTDKPDTNVYTGSREGYVAPSEKGSNEKKKEVVPNGGDKSVENKKGSDRNVKKTPSKTVTKPLLSESRKRKEAKTLATTQSQDLPAPTKDEPERTNSEPDNGEQEKIKKEKKKGTETSLKDGKNKLNEKIVKPAPTTTPDAGNGGLTPGKEDNKKTVTTSSVEIEVPEKKKAVENAGIIKIS", "sequence_length": 327, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "070c23691668f1bff3d22b52d4f61d6f2a34879791d984b595e686d3b26d5b92", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P34338.json", "taxon_id": "6239", "uniprot_accession": "P34338", "uniprot_release": "2026_03" } ], "pfam_id": "PF17339", "short_name": "PH_15", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5370-pf17340.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17340", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5370-pf17340.yaml" } ], "pfam_ids": [ "PF17340" ], "protein_name": "Uncharacterized protein YbxH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGAIERSGYTFQPEFSVVRQNGAIHVYHQGEFVEEIEFEFNGEYPDHDLIEELVNHYCFEHEI", "sequence_length": 63, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9355ec9e29828610c08151538c0e0969da890fc845c7fc81ba3376aec44e8eee", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54426.json", "taxon_id": "224308", "uniprot_accession": "P54426", "uniprot_release": "2026_03" } ], "pfam_id": "PF17340", "short_name": "DUF5370", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5371-pf17341.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17341", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5371-pf17341.yaml" } ], "pfam_ids": [ "PF17341" ], "protein_name": "Uncharacterized protein AF_1718", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVMVKIVHAQTVLPENVLEELKRKTGENATKDAIAKAVEHYLMCPYTHEAPLEKRLEEVIKKKKK", "sequence_length": 66, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f36e8c57864908b5b0acbe17c64b705ad827814090da58a3a6e70572cf8768a5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O28556.json", "taxon_id": "224325", "uniprot_accession": "O28556", "uniprot_release": "2026_03" } ], "pfam_id": "PF17341", "short_name": "DUF5371", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sinorhizobium fredii (strain NBRC 101917 / NGR234)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5372-pf17342.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17342", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5372-pf17342.yaml" } ], "pfam_ids": [ "PF17342" ], "protein_name": "Uncharacterized protein y4bD/y4pK", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRIEFEVTHPFHPWRGQRFVLSTRKQNWGEDRVMFYDADGRLRSLLASWTDVAAPDVFIQIAAGRSFVRPDDLATLAALIEQIERSHGG", "sequence_length": 89, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "32282554625bd1844326f90b1342d88040cad89c06ca7f052dde72f0ed28c9e7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P55371.json", "taxon_id": "394", "uniprot_accession": "P55371", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sinorhizobium fredii (strain NBRC 101917 / NGR234)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5372-pf17342.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17342", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5372-pf17342.yaml" } ], "pfam_ids": [ "PF17342" ], "protein_name": "Uncharacterized protein y4oN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSTRKQNWGEDRVMFYDAQGRLRSLPASWTDVNEADLFSQVAAGRSFSRPDDLSALASLIDRIKRRQEE", "sequence_length": 70, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f00957a36cfad310a0e16dd4eac77690367677dd6e9d74964e40690d4004c8f4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P55599.json", "taxon_id": "394", "uniprot_accession": "P55599", "uniprot_release": "2026_03" } ], "pfam_id": "PF17342", "short_name": "DUF5372", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5373-pf17343.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17343", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5373-pf17343.yaml" } ], "pfam_ids": [ "PF17343" ], "protein_name": "Uncharacterized protein C48B4.6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKTAALTDIEKSKATISFWKFIAMFIQALFLIGLVEDLCYYHMFYSRQYFFLEILVTIHTGFSFIVFLIEHKPLIMLHVGYMTLLTIIPIAYMVMQGVEFGILIFDDYHILVFRDFHKFGCSIMFSLYYIGYIVVCFLFIEALEKKPVLPQVYSIKPKLVAAVNPSNNCNVYPML", "sequence_length": 176, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1cdfb533ee4d35ba3e0758abf40aabb97283bd1bf25f48167d26c16ba26f19df", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P34360.json", "taxon_id": "6239", "uniprot_accession": "P34360", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5373-pf17343.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17343", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5373-pf17343.yaml" } ], "pfam_ids": [ "PF17343" ], "protein_name": "Uncharacterized protein C48B4.9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNNYSIDLKQGPSLLYVIPIKPVVLAVQLGAILFQFKSIYDFEYNFVGDLVFRTFVIFLSLTSFTAFLFNQKILMKAHLVMAIFLLAGPIACLQYLVFDFYRAEFHGDNNLKWDHTSSFENYLIFILVILLAVALGSYTWLCHLLIEGLDEKNAPKRRPQCKICSNHYVVPENEKLIYNIA", "sequence_length": 182, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9d865d9520b353199d0347eb241c7c2da1aade09a85e499d2b454cef6ae16885", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P34363.json", "taxon_id": "6239", "uniprot_accession": "P34363", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5373-pf17343.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17343", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5373-pf17343.yaml" } ], "pfam_ids": [ "PF17343" ], "protein_name": "Uncharacterized protein C48B4.10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKFYDPSQPEQSYDSPKLFGIIPIKFIVSFLQLVSIVSQILWLYSENDKIYLVLLSVGIVLNVFTVVVFIKEHKLLMRAHYYSALIFTVVPFIYAVYTFISFIELFFGDKDITFNQCSPFAYAFIFLCIYIFYLAMCRVLIKASEFQPDDMPDLDTTQGLFHYNRDAYDGGERAKLMYGEV", "sequence_length": 182, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cfc7071344b6af256742adb18e0182385706d4a6c6a7b66b5d71c29cfaf85d1c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P34364.json", "taxon_id": "6239", "uniprot_accession": "P34364", "uniprot_release": "2026_03" } ], "pfam_id": "PF17343", "short_name": "DUF5373", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5374-pf17344.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17344", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5374-pf17344.yaml" } ], "pfam_ids": [ "PF17344" ], "protein_name": "Uncharacterized protein HI_0941", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MILMFRMNKGMSFITLLFSLALFSVLFLVFNQWTASQRKSTVKTYQDFQAIQVAENQAQRQFLGLACEQLIQQNGLTFRIQCENERIIVRYPTSEILIKTQ", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5a8f16bb8ecab346674ddb87c2265fcbcb14744f27371dbdd4f605b923e00bb8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44082.json", "taxon_id": "71421", "uniprot_accession": "P44082", "uniprot_release": "2026_03" } ], "pfam_id": "PF17344", "short_name": "DUF5374", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella typhi", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5375-pf17345.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17345", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5375-pf17345.yaml" } ], "pfam_ids": [ "PF17345" ], "protein_name": "P4 prophage-derived uncharacterized protein t2655", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTPLPPVLRAALYRRAVACAWLTVCERQHRYPHLTLESLEAAIAAELEGFYLRQHGEEKGRQIACALLEDLMESGPLKAAPSLSFLGLVVMDELCARHIKAPVLH", "sequence_length": 106, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "97fe259dd745afcdae0896579cfeac9ee2a9d4c06daab8da17f471426d6361eb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P68665.json", "taxon_id": "90370", "uniprot_accession": "P68665", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage P4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5375-pf17345.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17345", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5375-pf17345.yaml" } ], "pfam_ids": [ "PF17345" ], "protein_name": "Uncharacterized protein ORF106", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTPLPPVLRAALYRRAVACAWLTVCERQHRYPHLTLESLEAAIAAELEGFYLRQHGEEKGRQIACALLEDLMESGPLKAAPSLSFLGLVVMDELCARHIKAPVLH", "sequence_length": 106, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "97fe259dd745afcdae0896579cfeac9ee2a9d4c06daab8da17f471426d6361eb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P68666.json", "taxon_id": "10680", "uniprot_accession": "P68666", "uniprot_release": "2026_03" } ], "pfam_id": "PF17345", "short_name": "DUF5375", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pasteurella multocida (strain Pm70)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5376-pf17346.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17346", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5376-pf17346.yaml" } ], "pfam_ids": [ "PF17346" ], "protein_name": "UPF0275 protein PM0505", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKVLFSYGTYNNRPYKACGVYESDNRENDGVITDYLSTIPDSYADNGFKVLAAVKDPTITREWIDSQAFEALIEHDQIKVGFYLLDDMEEEDIPDDVDERDTDPRFIPRKEFAYLLEKWLDFYHRPITDMNYQEIIDTKDAY", "sequence_length": 142, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1e61649dc2c21783b6edec1de707e20c8e2ddfdadd26867cf895a1cf699a239b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CNC7.json", "taxon_id": "272843", "uniprot_accession": "Q9CNC7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pasteurella multocida (strain Pm70)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5376-pf17346.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17346", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5376-pf17346.yaml" } ], "pfam_ids": [ "PF17346" ], "protein_name": "UPF0275 protein PM0504", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRYKMKVRFKYYEFQGGIYQTCGVYESDNEENDGVITDYLSTIPGSYADNGFKVLAAVKDPTITRDWISSQAFDALIEHDQIKVGFYLLDDMEEEDIPDDVDERDTAPRFIPRKEFAYLLEKWLDFYHRPITDINYQEIIDTKEAYL", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1183c9692ddf97fe32afd52b7684c101b1ebdd6fabe5ab2e5af1337e708434e2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CNC8.json", "taxon_id": "272843", "uniprot_accession": "Q9CNC8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pasteurella multocida (strain Pm70)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5376-pf17346.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17346", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5376-pf17346.yaml" } ], "pfam_ids": [ "PF17346" ], "protein_name": "UPF0275 protein PM0489", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MILSFEYINSFNRLIPICDSCSNYPIGSYVATYIRLFGKNEFEEKGIYDDIVNISIENEFVGFDGIDAFIEGDKVRIGFYLYGKGDEPEDYDPEESEFEIIDRKELIYILKRWKVFIHKPITDPHYQEIIDTKEAYL", "sequence_length": 137, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e970492c60c93fdf0e921a470888be245141615d3056974a5cf3108a7b4cdc08", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CNE3.json", "taxon_id": "272843", "uniprot_accession": "Q9CNE3", "uniprot_release": "2026_03" } ], "pfam_id": "PF17346", "short_name": "DUF5376", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5377-pf17347.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17347", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5377-pf17347.yaml" } ], "pfam_ids": [ "PF17347" ], "protein_name": "Uncharacterized protein HI_0234", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKVEDQIKIQRSFTELNELFKFLGDYFDPVSIGLVGVKIGNLGIKLE", "sequence_length": 48, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "82896e4ca6e1f5ef7ad8bc406991cc50800fe8f37cd039629f0d95d2c9a6f29a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P43968.json", "taxon_id": "71421", "uniprot_accession": "P43968", "uniprot_release": "2026_03" } ], "pfam_id": "PF17347", "short_name": "DUF5377", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5378-pf17349.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17349", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5378-pf17349.yaml" } ], "pfam_ids": [ "PF17349" ], "protein_name": "Uncharacterized protein MG135", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQTLNYLVIILIIAGVISVLAFTPLVRKLKIRFYLIQVLAIVLFVYVFFGRQIIYLFPDVYGQNSQSSQNLDSLRLSRIFLLDLCPFFAVIAPVFVFLKQKKISGVLAVFGLFGALVTLFGELIFTPVNEQDIVNFIFVGTGNNQIYFMMHFLSLLVSLAIILWDNCFSLISFFYIHVFALIYFSYVALMVSVFKGQITGNTTGILASDWTNGEYKNVATFLNLSNSDPQLVFIVGFSLSYVAILLMTLFANIPTFMEMKKDKIFIKKENLIRKDLELLA", "sequence_length": 280, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ed355bfc2c5600080bd23e4719778a591c3a828e43366dfd804b22046181a913", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47381.json", "taxon_id": "243273", "uniprot_accession": "P47381", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5378-pf17349.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17349", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5378-pf17349.yaml" } ], "pfam_ids": [ "PF17349" ], "protein_name": "Uncharacterized protein MG135 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQSLNYLVVILTVAGVLVILGFTPLIRKLKIQFYCLQVFAAILFLYVFFGRQIIYIFPDIYGTAAKAKNAVANVPLDSLRLSRIFLLDLCPFFALIGPIFIFLRQKKVAGVLAIFGFYGAAITLFGELIFTPLKQEEIVKFLFVGLENNQVYFMMHFLSFLLSLAVFLWDDGFSLISFFYIHVFALAYLSYVALMVNIFKGQITGNTTGILAEDWLSGEYKNVAVFLKLDPKNADLIFGVSFGLSYFAIVLLTVLVNIPTFIQLTKDKQMVKLALQLKKAQASVA", "sequence_length": 285, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f2b9a9472b4c26030deef006f950cc5dd18a9ec04892cc7580cdc74319281a1e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75501.json", "taxon_id": "272634", "uniprot_accession": "P75501", "uniprot_release": "2026_03" } ], "pfam_id": "PF17349", "short_name": "DUF5378", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5380-pf17351.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17351", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5380-pf17351.yaml" } ], "pfam_ids": [ "PF17351" ], "protein_name": "Uncharacterized protein F46C5.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQSHFITTASILLVVIVAFCAAAPMIEEPKLEKPTNLEILFAKIVKKQNESKQHRLINFISRAMPGGVDAPIASMAEYETFKSDKSANFLSDGAGHVVFRQYRRARLSDILHNVNRRAGGV", "sequence_length": 121, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4708743fad255647d808940d32b87ee89236dc7fed96fe01f1d3580d9b920cc6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P52880.json", "taxon_id": "6239", "uniprot_accession": "P52880", "uniprot_release": "2026_03" } ], "pfam_id": "PF17351", "short_name": "DUF5380", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5381-pf17353.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17353", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5381-pf17353.yaml" } ], "pfam_ids": [ "PF17353" ], "protein_name": "Uncharacterized protein YfjE", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEALTFESKYALLYLGGGLLAMIYGLITFFMAFPAFTSRGNVIFTIKTGPSGEIFLRKRSVLFSEVKRLYMGRHQYSLKGIFFEDIIIEKTDGKIVRIPTWNIITNPLFFEAVERYILPHLNEEAQNNWISQFTEVQRKAYLKEFENHPKL", "sequence_length": 152, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "851886e72dcebe8eeb0470a4fab9ff724263323d804bdb1416c9eab2e3f41e43", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31554.json", "taxon_id": "224308", "uniprot_accession": "O31554", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5381-pf17353.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17353", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5381-pf17353.yaml" } ], "pfam_ids": [ "PF17353" ], "protein_name": "Uncharacterized lipoprotein YfjD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNQEIIEVKSKMFLRIWAFVGSAGMGLACLWLFYMGITFQTKYYLLAIPAGFLFTLFCLYLFIIFFPAFTPRGNTIFRIKTGKNGEVFTDKVSVTFTDIKKIEMSRHKFSLKGIFQEDILIQTVDQKTIRIPTWNIIPNPLFFEAVERYILPHLNEEAKSNWIGQFTDIQRSAYLKEFENHPKL", "sequence_length": 185, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7ecaf9cf5df1aea4cc505ddba598f4501ab203d54717b3ce09b5868124b54c08", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O31555.json", "taxon_id": "224308", "uniprot_accession": "O31555", "uniprot_release": "2026_03" } ], "pfam_id": "PF17353", "short_name": "DUF5381", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5382-central-domain-ipr035415.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035415", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5382-central-domain-ipr035415.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5382-n-terminal-domain-ipr048313.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048313", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5382-n-terminal-domain-ipr048313.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5382-n-pf20840.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20840", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5382-n-pf20840.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5382-pf17354.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5382-pf17354.yaml" } ], "pfam_ids": [ "PF17354", "PF20840" ], "protein_name": "Uncharacterized protein B0228.8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRFTLFVFFLSISIAYADFDFEDYNFATFNEIYDNEIPDDIPSSRHFLKSSRGTVGLPKTATEMMTRFNENLLNFLKSKSENDWKLIMELMSPDAFIETCMESAYGLSMDQFHKWITFLSNYYAEVGLTSTKIKDNSETGVTTELVYYTVLRNGEKGSDKWAMSATLNKKKGHFCINTLHMLSECKNIPKKPSLEPAIPIETFISSLKKKLVNDIFLNGGLHYKSAYESMYNYITPATKVFICDVGKMNGNQFVEYWYKRFGKVQTYSEHVFDISNNGTNWHVDFEVTYESEPGKFYRDRYQFSMNKYTNVKVEYFENFLDWRIYQIQQNCTESRTKMSKSDASVVKMALASRRWDQMLNKGLSWDTLQAFKEMFDKSKFHGYTCGMKFENWAKFDNWLTGFSNFYAKSVPKQTNVYAYQDSKIGFWIVNTMSAASDNSTSTHRVFFEGYYVC", "sequence_length": 454, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "51564f8049d56d163f203e90b1083ed4c73105b1c969961c1293179608d5813b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q09224.json", "taxon_id": "6239", "uniprot_accession": "Q09224", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5382-c-terminal-domain-ipr048314.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048314", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5382-c-terminal-domain-ipr048314.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5382-central-domain-ipr035415.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035415", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5382-central-domain-ipr035415.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5382-n-terminal-domain-ipr048313.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048313", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5382-n-terminal-domain-ipr048313.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5382-c-pf20839.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20839", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5382-c-pf20839.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5382-n-pf20840.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20840", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5382-n-pf20840.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5382-pf17354.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5382-pf17354.yaml" } ], "pfam_ids": [ "PF17354", "PF20839", "PF20840" ], "protein_name": "Uncharacterized protein B0228.9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQSVTPPPTQQGKPDPTNSDMMMKRFQEDMVGILDGRSRAHFDDLANYFHSKIRICTCFEPGRSLSVPEFQHVLTFISGYYQHLTEVRSDRWTDHPNYINGIFTYTAMGSDRKNSDGKWTYEASMDWNQNKFLIEYIWFPYNCSVFPVKDPSEPLEDVDNYLERVRTKLSSGLFLPDGVDQTLQNFEEFGDWITDDAIIVVCDEQKMDKNEFIKYMSTRYHHIRKYSNNQFDHVKNNQDFEITFSTTWTADNTTQFRDTYIFRVKKAEDYFPENDRLYLLWKIYWVTKRCTVDVTQYPAVLDGSVILGEVNKRFCGMIDGENWDVYQSFLDLFDPNDTKWGSCVGKREQKYDKIREYMNKVVARYAKCVVSEVRIRNLVHADFSTTFLLSRANEIQEQEELDVGFVGYKNKNGHWKINRMYFECEESKKRKFMDNLLNVRLKC", "sequence_length": 443, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "22c8375b73c92ab4ae5ed963941dc9a0a03bbc85b7f3313388911713f66816f3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q09439.json", "taxon_id": "6239", "uniprot_accession": "Q09439", "uniprot_release": "2026_03" } ], "pfam_id": "PF17354", "short_name": "DUF5382", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5384-pf17358.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17358", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5384-pf17358.yaml" } ], "pfam_ids": [ "PF17358" ], "protein_name": "Uncharacterized protein YfgI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKVFLCAILASLSYPAIASSLQDQLSAVAEAEQQGKNEEQRQHDEWVAERNREIQQEKQRRANAQAAANKRAATAAANKKARQDKLDAEASADKKRDQSYEDELRSLEIQKQKLALAKEEARVKRENEFIDQELKHKAAQTDVVQSEADANRNMTEGGRDLMKSVGKAEENKSDSWFN", "sequence_length": 179, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "82224d6f8729045a40f23353daae4cacd54c5c266d3ff579ef3c394d2f87786b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76573.json", "taxon_id": "83333", "uniprot_accession": "P76573", "uniprot_release": "2026_03" } ], "pfam_id": "PF17358", "short_name": "DUF5384", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5385-pf17359.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17359", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5385-pf17359.yaml" } ], "pfam_ids": [ "PF17359" ], "protein_name": "Uncharacterized protein MG364", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDGGQQGSFFGLLVIVIPIILLIVFFSKKKGAQKNDFSGEGGNRSSRKDEVWKTIKQFLQEKNERGKEIIKTFVAKKPNPLHSKKDRKLFNQEIQAYITSNNLGKSEAKRYKNEQTRLMQRELYCIYFVTKDAKSTEVDDARIIEAEVYQKPTKTKSTPERLIRILGLKNFETEMQWIQPLMVREEKRKEKEEQKKLKLAARELKKKKKKKIKKPKEIRNQKNV", "sequence_length": 224, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8e1e8583b08a519d7298ea40af4998c24aa661d10a7ce464088fe6c55737c423", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47604.json", "taxon_id": "243273", "uniprot_accession": "P47604", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5385-pf17359.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17359", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5385-pf17359.yaml" } ], "pfam_ids": [ "PF17359" ], "protein_name": "Uncharacterized protein MG364 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNGGGQQGGFFGLLVIIIPVILLIVFFSKKKNSQKTEFGGEGGSRASKKDEVWKTVKQFLQEQNERGKEIIKTFVAKNPNPLHSRKDRQFFNQEVQAYITAHNLSKTAAKRYRHEQLKLKQRELYCIYFITKDAKTSVFDEARIIEAEVYQKPNKTGKGAPERLIRILGLKNFNDEMKWIQPLMDREEKRKEKEEKRKRELAARQLKRQEKKKQKTSK", "sequence_length": 218, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ac84070a775f9da6f205eadfe2e0eabd64e100a3b596e829bea36049486918ae", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75236.json", "taxon_id": "272634", "uniprot_accession": "P75236", "uniprot_release": "2026_03" } ], "pfam_id": "PF17359", "short_name": "DUF5385", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5386-pf17360.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17360", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5386-pf17360.yaml" } ], "pfam_ids": [ "PF17360" ], "protein_name": "Uncharacterized protein ZK512.8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSHRNDSSRKHRKSRSIKNDQHYPTVSFDGAESVDIPADEGKSPVSTHLSLASNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVTSAHSNSSLPVRSPAIMTLMGGVPEAEKEYNVGKGGLLKISKMKEGGKRYEVSANERFTVFQQTAGQTCLFTFKA", "sequence_length": 171, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "24d150f4eecab6e9f54f3ca6dc373582d391f923472bf56f9075ed2dbfa8c354", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P34646.json", "taxon_id": "6239", "uniprot_accession": "P34646", "uniprot_release": "2026_03" } ], "pfam_id": "PF17360", "short_name": "DUF5386", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17361", "short_name": "DUF5387", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17363", "short_name": "DUF5388", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pasteurella multocida (strain Pm70)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5389-pf17364.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17364", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5389-pf17364.yaml" } ], "pfam_ids": [ "PF17364" ], "protein_name": "Uncharacterized protein PM1437", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERENKPKGFSGFSWGIALFCLPILLWPLALTISPNLLKNPRLSETETTLMSVFLWAYPFGLALIARLAYRLNQHKPPFARGLLGLSAVAFYGMLFYVAGGFH", "sequence_length": 103, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "21d80802d2049611b8d4f097de85d6c69eed3ef80e2bf567f5eae23b3fa9a1c3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CL11.json", "taxon_id": "272843", "uniprot_accession": "Q9CL11", "uniprot_release": "2026_03" } ], "pfam_id": "PF17364", "short_name": "DUF5389", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5390-ipr035334.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5390-ipr035334.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5390-pf17365.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17365", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5390-pf17365.yaml" } ], "pfam_ids": [ "PF17365" ], "protein_name": "Uncharacterized protein F22B7.3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAHNNYLDLEMLFNECNAQHYENLGMFFKWLQQFAAHHEDPKITIKDFKGDKTSGEMILHVNTFTLFKYRQEFDMKVSALNDNGLGWKILFVDRSLGCN", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f10ab6d3ce8930fcfbe39362831b6cf4b4d987107a90a548568fd005cf95dd32", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P34406.json", "taxon_id": "6239", "uniprot_accession": "P34406", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5390-ipr035334.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5390-ipr035334.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5390-pf17365.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17365", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5390-pf17365.yaml" } ], "pfam_ids": [ "PF17365" ], "protein_name": "Uncharacterized protein C28H8.2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRLCGLLIFLSYIVYVDNAVTANFISDPRSMFPKMVRTKNAFHFLQYFMGTFRRMFRNKTEMIEHFNYYDDQVKGTDCHIQEELDFARFKSYFDRYTRTHYNPEIRIIFAIMTKDSSHMTVEFHVTSQSWFGFEDHFHMIIRAVNDENVGWGVRYLSMAFNC", "sequence_length": 162, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d26ab6ca60b89cfd0a1aa71a12950ac6a6709f2fec266f95c3df40c866b40f9c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q09243.json", "taxon_id": "6239", "uniprot_accession": "Q09243", "uniprot_release": "2026_03" } ], "pfam_id": "PF17365", "short_name": "DUF5390", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5391-pf17369.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17369", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5391-pf17369.yaml" } ], "pfam_ids": [ "PF17369" ], "protein_name": "Uncharacterized protein YxaJ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKKNSVAIMTTISAFLFCAVIVAASLSPLAGTGAAANQFNSAGMWSAVGMILVLYFIPFLVYMLGVDAMRYVMAVLCGFGLLIHLSSAGFILMFSFFSDHLLSEVIFVLGVSLAAAAVNVIWFVAAFRSGAEKTSVNTLT", "sequence_length": 141, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1fb07dc345b2643915424fd315e745123bbaadc717f79e473aba79a1a96e932a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P42109.json", "taxon_id": "224308", "uniprot_accession": "P42109", "uniprot_release": "2026_03" } ], "pfam_id": "PF17369", "short_name": "DUF5391", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5392-pf17370.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17370", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5392-pf17370.yaml" } ], "pfam_ids": [ "PF17370" ], "protein_name": "Uncharacterized protein YwnF", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNFYRVEQMPGFIKTEMQKIQKAVQPFMKKTVIYRFLAIPLAAFSLFNLAAFLFHASADRESLISAGIFALLAALGLAFFKEAGYQHKQIQKTVHIYMLNRIKKSEILSEERKSSYARQIKEEPFAMRSFVEFLTEEDRRKKMY", "sequence_length": 144, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "42fd72d0bffba20156e9263ab5898083e12d1c97b12201a429660a8f160defb1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P71041.json", "taxon_id": "224308", "uniprot_accession": "P71041", "uniprot_release": "2026_03" } ], "pfam_id": "PF17370", "short_name": "DUF5392", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Trypanosoma brucei brucei", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5393-pf17371.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17371", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5393-pf17371.yaml" } ], "pfam_ids": [ "PF17371" ], "protein_name": "Uncharacterized 25.6 kDa protein in aldolase locus", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLCDSVPSPLSLLLRRCATVKMSENGTSRRGGATRNESVVGSSLCSFANRPAPVSDTQFIRSAVGKNSCFLIEIVRWLRDVPSDEAKDVAKEKGSAYSNSEGTKQQNGRTNGESNREQRLLLGLSTSNEIIDHVVHDLPFGTAVAQLIRELVGSNLFTEEQLHRWIGRSLKDVESKPPATIGCFAALLVFVLLHSRWELPADIREMTVQLCSQNKQQQDCVQLINILQRGA", "sequence_length": 232, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6d6d7ef79cb49a852729dbf5f4dcb4154bfef6acabeb2f59f7f2cce921eab4ab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P17958.json", "taxon_id": "5702", "uniprot_accession": "P17958", "uniprot_release": "2026_03" } ], "pfam_id": "PF17371", "short_name": "DUF5393", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia conorii (strain ATCC VR-613 / Malish 7)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5394-pf17372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5394-pf17372.yaml" } ], "pfam_ids": [ "PF17372" ], "protein_name": "Uncharacterized protein RC0039", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTNNQFSEDTKKIADQIKDALMGISDDLVLESKEVEEIFEELSQNEEFEYEMERMLSILNEQTMDLTQLQSRIILLIRKYLGKTKNLKLKMLKMDEKLINKNVAEVSNYLMHQHSKIVRDANKNLTNPKDKLQGLTKQARIDLKRLLKSFAVYQIYMFMNPKRIAGETKLMNFAYNMIKGGMKLAKKYEGGKEQEIKSYSPRLIKKLKKAHVGFKKSGGISI", "sequence_length": 222, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "935e613f6a73e49e0224d72f31d51a8a6850bbe711cf589c3c321c3b220c573e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q92JM8.json", "taxon_id": "272944", "uniprot_accession": "Q92JM8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5394-pf17372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5394-pf17372.yaml" } ], "pfam_ids": [ "PF17372" ], "protein_name": "Uncharacterized protein RP030", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTNNQFSEDTKKIADQIKDSLIGISDNLVLESKEVEEIFEELSKNEEFDYEIERILAILNEQTMDLTQLQSRIILLIRKYLDKTKNLKLKMDEKLINKNVAEVSNYLMHQHSKIVRDANKNLAKPKDKLQSLTKQARMDLKRLIKSFAVYQVYMFMNPKRIAGETKLMNFAYNMIKGGMKLAKKYEGGKEKDIKSYSPRLIKKLEKAHAGFKKNNSISI", "sequence_length": 219, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ef45fd70660031f846c1a61d514896aaf174bbf4ba0724b72af47bfd8d9641de", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZEB5.json", "taxon_id": "272947", "uniprot_accession": "Q9ZEB5", "uniprot_release": "2026_03" } ], "pfam_id": "PF17372", "short_name": "DUF5394", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5395-pf17373.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17373", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5395-pf17373.yaml" } ], "pfam_ids": [ "PF17373" ], "protein_name": "Uncharacterized protein AF_1616", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVKLSFTLRFGDVWVAENEEIVAKGHSLDELDRNLELELRKAGYKGRVEIFMKFDYSTIPEWMRQFHPHYFNRTVVFDLD", "sequence_length": 80, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c8a1a5f146040a0e6c2e9dea04daf9afab58ceeb70f2831f2d55d6c8e40c11c3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O28657.json", "taxon_id": "224325", "uniprot_accession": "O28657", "uniprot_release": "2026_03" } ], "pfam_id": "PF17373", "short_name": "DUF5395", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5396-pf17374.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17374", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5396-pf17374.yaml" } ], "pfam_ids": [ "PF17374" ], "protein_name": "Uncharacterized lipoprotein MG321", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLKKRYLLLGSTLTVSAALILSACASSQLNKGVFFTSSSADLLKNNSVPLSMFNVSPTSSFFGNAYAGLTNYVATGTNRDDGVNVTDQIKEKLVLELALSVTGYKKTTHSGLKGRAQKNGSTDSSDGSSKNDYTKFNEWDAIGTIYRDSSKSITEDPNYHKITQEATRYEFTINTSLSWVDNAGREVKQNNQPVKLSSKDFERGFETYILSSNLGFNRNGYFIDLMGLDVEKTVGMDKTNGSSDGNGKGIEITDENYDVENYRSVDDNKFNVYLTSPFPFFLSMMSKEFFFPIPHTHPKVKALKLGKDSPLKYNQNNNRKILDQANTNFDGIYGGGVNAWKDTWSVGPYYVESFNQAQIVFKRNQIYDAIITPNLPKTRQENEKPIPAIVSYFQPGATPEVFYSSYIAGGLSASAVPYSQQQDARSRFNGTGDLRWLKIQKTAQSAQVTYSGKPYVANDSTVQLNANITETEAKFLYNSESEEALTIRAGINGLINWKNLAIIDLPNSGDVNYSTVPFGIFKEKPANGTSSGTNTDGIENDYYYKINNNQRLGLIPEQTGTFQKDKNVLDTATVKLSYYSSTKTNGAQVRTASTSGSSSQTSQVSSKQVSVTKQSFISALKKVGFTGNNPLHFNIKLGNASLSSNQVDYYNALKQALTELGNDNGENLIIPEIILGDAQGPTRNEWYIGLSSVLGFSYWSPDYDGVGTWLDAATQLNSEGIGEVITYNSGSHIVRTLLLAASQNNVFNQIENKLQNNTTTNGKDWCSCITSADLFKDDPYVIKNFGTNGNNGTSASLAFTKKALSLLKFLVDNKVLKADKVKEAIKDPDKYLSKRSKIDDNKPANVSDIHIGYELKDLYDNAAQLNRFNSIWAEQDTDNAKFLITVVDSYFPVLPVSAPGLNETIPSLLKPWFSLRNAPSGIATMRDSGYIDE", "sequence_length": 934, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6e84b2c004948f06d57d6ecbda73679101662f8e389db1c15c2378578b9c2b37", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47563.json", "taxon_id": "243273", "uniprot_accession": "P47563", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5396-pf17374.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17374", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5396-pf17374.yaml" } ], "pfam_ids": [ "PF17374" ], "protein_name": "Uncharacterized lipoprotein MPN_459", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFQRKYWGLLSTLGVSSAVALSACAAQARDVYVTSSASDLLKNNLVPMSMFNVSPTSSFFGSKYAGLTTYIATGSNKDDGVNVTSQTQEKLVLELATSVKGYKKKTSTASNMKTASVSSSSSSTGNNGSTEDEWEVVGSEIKRESGKGDNGKSITEDSNFQTISQQATRYEFTIDTSIKWVDNNGKPVKDEKGQEVKLSSKDFERGFEAYILSSELRFNRNGYFIDLMGLDVEKTVGMTNGKNGTQVKKMTTDSSSTQQSEEKKIEITDDNYDPEDYRSTSDDKFNVYLTSPFPFLLSMMSKEFFFPIPHTHPKVKAIKVGPNSPLVYNEKNSAKILDQTKTNFDGIYGGGGVNAWRDAWSVGPYYVESFNQSQIVFKRNKEYDDHITPNLPKTREGNEQPIPTMINYFQPGATPEVFYSNYIAGGLSSAGVSYSQQEDARSRFASTGDLRWVKVQKTAQSAQITYSSRPYILEGETVKTNSNITETEAKFLYNSESEEALTIRAGINGLINWQNLAIILLPNSGDLNYSIVPFGIFKEKGKDVQVKQKNTGQASQGSDLMNDYYYKI", "sequence_length": 569, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b7a9b1e04cc1bf8dde5b8e7fead6bfdccf246748153b4772d94f12d1d21b6ab5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P75324.json", "taxon_id": "272634", "uniprot_accession": "P75324", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5396-pf17374.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17374", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5396-pf17374.yaml" } ], "pfam_ids": [ "PF17374" ], "protein_name": "Uncharacterized lipoprotein MG321 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFQRKYWGLLSTLGVSSAVALSACAAQARDVYVTSSASDLLKNNSVPMSMFNVSPTSSFFGSKYAGLTTYIATGSNKDDGVNVATQTQEKLVLELATSVKGYKKKDKATSSQKTSTNSSCTTTSSGTSTSGEDDWECIGEIKRQSSSNGQNNQQSKSITEEEKFQEISQKATRYEFAIDTGIKWVDNNGKPVKDASGNDVKLSSKDFERGFEAYILSSELRFNRNGYFIDLMGLDVKKTVGMTKKNGAQVQMKVASSDEKDGEEKTVKITDDAYNPEDYQSTDDSKFNVYLTSPFPFLLSMMSKEFFFPIPHTHPKVKAIKVGKDSPLVYNEKNGSKILDQTKTNFDGIYGGGVNAWRDTWSVGPYYVESFNQSQIVFKRNSEYDTHITPNLPKTREDNEKPIPTMINYFQPGATPEVFYSNYIAGGLSSAEVPYSQQEDARSRFAGTGDLRWVKVQKTAQSAQITYSSRPYVVEGETVKTNSNITETEAKFLYNSESEEALTIRAGINGLINWQNLAIILLPNSGDLNYSIVPFGIFKEKGKNGASVQQKAVSTTEGSDLMNDYYYKIEKEQRLGLIPQREGNYEKNKNVLESATVKINYYSSKATSGQAGAAASAAFAKNNNTSDNTQQNQTSSVEAKSVNVTKHSFVQALKKVGFSGSNPLHFNMKLGNSSLSANGVDYYNAVKQALTELGTADNGEKLIVPEIILGDAQGPTRNEWYIGLSSVLGFSSWSPDYDGVGTWLDAATQLNDQGGGDVITYSSGAHIVRTLLLAASQKDVHSKFTQKIDQQNTASTTSDVTVKKADSSQDSSKSNTEEEKWDDVTSADLFKDDPYVLKNFGDAKAQAAQRSTGSTTSGNGTQASLEFTKKALSLLKFLVDNGILDKEKVKEAIKDPNKYLGKRDKIENGTNKPSKNEDFIGYELKDIYKKAAQLNRFNSIWAEKDTDNAKFLITVVDSYFPVLPVPAAGLNETSPTLLKPWFQFRSAPSGNGTIRDYGFIPENK", "sequence_length": 1005, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c7f061e36ac79b9f1b52c601af17c23c00b3f511ae1c0b77105192434039d8c5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75327.json", "taxon_id": "272634", "uniprot_accession": "P75327", "uniprot_release": "2026_03" } ], "pfam_id": "PF17374", "short_name": "DUF5396", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5397-pf17375.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17375", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5397-pf17375.yaml" } ], "pfam_ids": [ "PF17375" ], "protein_name": "Uncharacterized protein HI_0451", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELRQQIPTGCIKQFGQFGVPYVVGEVAEFLPDGDVLVNITLLQSGEKDIYRLSHLLEDPEAE", "sequence_length": 63, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6f32becc0e1410feecd12cd7becc3396c6271fc18ecf14446d7e5fffbd33c299", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P43998.json", "taxon_id": "71421", "uniprot_accession": "P43998", "uniprot_release": "2026_03" } ], "pfam_id": "PF17375", "short_name": "DUF5397", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5398-pf17376.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5398-pf17376.yaml" } ], "pfam_ids": [ "PF17376" ], "protein_name": "Uncharacterized protein CT_665", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFNMENSAAKGEKAARQLFDLEQDMHDVTKAHEVNANVQSKVQTLTSSLREGASKESFEKQQTLLAGYVALQKVLGRINRKMV", "sequence_length": 83, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "690c72acc0ce7732958b841c1fdb2df4f4fc2ef464eb98326fba9434fbe99372", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O84672.json", "taxon_id": "272561", "uniprot_accession": "O84672", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia muridarum (strain MoPn / Nigg)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5398-pf17376.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5398-pf17376.yaml" } ], "pfam_ids": [ "PF17376" ], "protein_name": "Uncharacterized protein TC_0036", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFNMENSAAKEKTAARQQLFDLEQDMHDLTKAHEINTNVQSKVQKVTASLREGASKESFEKQHTLLAGYVALQKVLGRINRKMV", "sequence_length": 84, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c9b9acf94499fb6d1b778528b8988a335e49aa99711f4b97b72da33dd2b2aeab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9PLQ9.json", "taxon_id": "243161", "uniprot_accession": "Q9PLQ9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5398-pf17376.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17376", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5398-pf17376.yaml" } ], "pfam_ids": [ "PF17376" ], "protein_name": "Uncharacterized protein CPn_0711/CP_0035/CPj0711/CpB0738", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFNMENTAKEEKNSQPLLDLEQDMQDHDRAQELKASVQDKVHKLHALLREGSDKESFGQQQSLLAGYVALQKVLGRINRKMI", "sequence_length": 82, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "518f7dc587c6dcefb56c4edf56796f7d6591e556439c1f41257306c7c245587c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z7J4.json", "taxon_id": "83558", "uniprot_accession": "Q9Z7J4", "uniprot_release": "2026_03" } ], "pfam_id": "PF17376", "short_name": "DUF5398", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5399-pf17377.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17377", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5399-pf17377.yaml" } ], "pfam_ids": [ "PF17377" ], "protein_name": "Uncharacterized protein CT_273", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVEIFNYSTSVYEKHSSTNKLVNDFRKEIQMEGAAIRDIAKHAQILDMTPKPSALSTLMQTNKKTCWASFSPPTNFHKQRFSTPYLVPSLGSPDKQDQDMEKISSYLKVLTRGKFSYRSTADTLSRKNKRSSDQKRNGQHFEQEELEVEEEVLVREGTVLLRALDQGIKSSNLLIDYVISRIFQFVQG", "sequence_length": 188, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0688681d5a124444e18940ca781ad33faca2ee23b454ec351ec48f5946567c04", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O84275.json", "taxon_id": "272561", "uniprot_accession": "O84275", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia muridarum (strain MoPn / Nigg)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5399-pf17377.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17377", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5399-pf17377.yaml" } ], "pfam_ids": [ "PF17377" ], "protein_name": "Uncharacterized protein TC_0545", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVEIFNYSTSVYEKHSSTNKLVSDFRKEIQMEGAAIRDIAKHAQILDMTPKPSALSTLMQTNKKTCWASFSPPANFHKQRFSTPYLVPSLGSPDKQDQDMEKISSYLKVLTRGKFSYRSETSPLLKKNKPSSDQDDTSKQSFDQDEEEDALVHEGKILLRALDQGIKSSNLLIDYVISRIFQFVQG", "sequence_length": 186, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4574346158fd9666686339a3be0ca94cad32df64390f11f396ae7bb147805abb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9PKC1.json", "taxon_id": "243161", "uniprot_accession": "Q9PKC1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5399-pf17377.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17377", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5399-pf17377.yaml" } ], "pfam_ids": [ "PF17377" ], "protein_name": "Uncharacterized protein CPn_0422/CP_0331/CPj0422/CpB0438", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVEIFNYSTSIYEQHASNNRIVSDFRKEIQMEGISIRDVAKHAQILDMNPKPSALTSLLQTNQKSHWACFSPPNNFYKQRFSTPYLAPSLGSPDQQDEDIEKISSFLKVLTRGKFSYRSQITPFLSYKDKEEEEDEDPEEDDDDPRVQQGKVLLKALDLGVKSTNVMIDYVISRIFQFVQG", "sequence_length": 181, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d0cd7d358d8b2db84065530f6003f4827b5e834fab179b970fe060891128dcb7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z8C1.json", "taxon_id": "83558", "uniprot_accession": "Q9Z8C1", "uniprot_release": "2026_03" } ], "pfam_id": "PF17377", "short_name": "DUF5399", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5400-pf17379.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17379", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5400-pf17379.yaml" } ], "pfam_ids": [ "PF17379" ], "protein_name": "Uncharacterized protein 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"020735c28e4f79d1e2aa80df97f1dc13288e90666fa1b5149fce6ad1ff4853d1", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSKKVTDTVQEMAQPIVDSLQLELVDIEFVKEGQSWFLRVFIDSDDGVDIEECAKVSEALSEKLDEADPISQNYFLEVSSPGAERPLKKKADFEKSLGKNVYIKTYEPIDGVKVFEGELAEFDGQTVTVEITIKTRKKRINIPYEKIANARLAVTF", "sequence_length": 156, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "020735c28e4f79d1e2aa80df97f1dc13288e90666fa1b5149fce6ad1ff4853d1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32726.json", "taxon_id": "224308", "uniprot_accession": "P32726", "uniprot_release": "2026_03" } ], "pfam_id": "PF17384", "short_name": "RimP_C", "status": "HAS_SEQUENCE_EXAMPLE", 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"MKDKILKDREEIEKFFIKLLGREIFISEMDIFASRCGCVGIMITVRGLFVDDVEIFKEKILNKLEELAKSYDINADWIFVRVLPGSDDIINIGVREFCNICREEYRFKKPRPDLISLKF", "sequence_length": 119, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "346644a25fdf37bd140276dd826696c5ef6449d5975feafc11986a71f9d75962", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q59052.json", "taxon_id": "243232", "uniprot_accession": "Q59052", "uniprot_release": "2026_03" } ], "pfam_id": "PF17393", "short_name": "DUF5402", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium phage D29", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5403-pf17395.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17395", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5403-pf17395.yaml" } ], "pfam_ids": [ "PF17395" ], "protein_name": "Gene 21 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKVYANANKVAARHVDVRKRVKEERDGVTRRARTNLARANKTTRITKEGYFPASIEEVDGDVDFHTVLHAPNAFALEFGHAPSGFFAGTDTKPPDPEYILTRAAIGGTVS", "sequence_length": 111, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bd8afd8bb8b4f9110a3e96b2e5b272d6ca6c1077ea2c4f0560f929bc1517531c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O64215.json", "taxon_id": "28369", "uniprot_accession": "O64215", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium phage L5", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5403-pf17395.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17395", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5403-pf17395.yaml" } ], "pfam_ids": [ "PF17395" ], "protein_name": "Gene 21 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKVYANANKVAARYVETRDAVRDERNKVTRRAKANLARQNSTTRITDEGYFPATITEQDGDVDFHTILNAPNALALEFGHAPSGFFAGTDTKPPEATYILTRAAIGGTVS", "sequence_length": 111, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0be70e1a513f9ff912ed53ecae98f523753958a85112e6a5df868cfdbfff1b85", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q05227.json", "taxon_id": "31757", "uniprot_accession": "Q05227", "uniprot_release": "2026_03" } ], "pfam_id": "PF17395", "short_name": "DUF5403", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Tritonibacter scottomollicae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1611-n-pf17396.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17396", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1611-n-pf17396.yaml" }, { 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"sequence_length": 333, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c0d9f366f41666bbc0ced1375f251e0666f921019f749a5a93a254b4c941f9e7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A2T1AE85.json", "taxon_id": "483013", "uniprot_accession": "A0A2T1AE85", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudoalteromonas sp", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1611-n-pf17396.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17396", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1611-n-pf17396.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1611-pf07755.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1611-pf07755.yaml" } ], "pfam_ids": [ "PF07755", "PF17396" ], "protein_name": "D-glutamate N-acetyltransferase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQIKPPYLLFIGDATDKLSIKMAQSLADWRAELCVGELSVNGCTVSTGLNQCSICEAAKLGAKTFVLGFANSGGVLDKKWLPIISEAIENGMNIVSGLHDKLTNFDELVSLSQKHNTNLLDIRHPSTAFATGKGYKRKGKRLLTVGTDCSVGKMYTSLSLEKAMKEQNIDVDFRATGQCGILISGSGVAIDCVIADFISGAAESLSPDAEETHWDIIEGQGSLSHPAFAGVSLGLLHGSQPDALVICHALNRTHMRGLLHTSFPSIETTIELNIAAAKLTNPDVQVVGISVNTSSVSIEQGNEICERLSQTFGVPCVDPLRDGVDSIVANLC", "sequence_length": 332, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d233fd888471e43669f332aeb0b2fac44fb59ce5fab9d43f3919864cdb20c35d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DXZ1.json", "taxon_id": "53249", "uniprot_accession": "P0DXZ1", "uniprot_release": "2026_03" } ], "pfam_id": "PF17396", "short_name": "DUF1611_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tsx-pf17397.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17397", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tsx-pf17397.yaml" } ], "pfam_ids": [ "PF17397" ], "protein_name": "Testis-specific protein TSX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEKQSPKTSEAECSAMDLPEFEDEENWLFKVLGFQPGPSSALDDDTDDQADEPLSAAEFLHLQDILQEDRVSSTDDEDTCQAGCTEDDETSHSDRDIDNNVKVITGNIKASPSMYMEMFTDQNPQADQDLEETESDGAMNPTD", "sequence_length": 144, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "67f1ffe2f265a2a2291308e07ad2cc2186b21379bf3a470f79a58f39c95f7a5e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P70675.json", "taxon_id": "10090", "uniprot_accession": "P70675", "uniprot_release": "2026_03" } ], "pfam_id": "PF17397", "short_name": "TSX", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage 186", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5405-pf17399.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17399", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5405-pf17399.yaml" } ], "pfam_ids": [ "PF17399" ], "protein_name": "Uncharacterized 10.4 kDa protein in GpA 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSIRIEIGDKWVITSDQYQFILNEKKVVKTGNKAGEEWLDTIGYYPKINQLISGLVHHHIHTAMIISLSAMAEEIEKLSFICEEAFKAVKK", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a1b3be42c0df02d5bebce7dec23694f63db98f2eafbbf1fa8f9c93ef997e61c0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41061.json", "taxon_id": "29252", "uniprot_accession": "P41061", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage P2", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5405-pf17399.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17399", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5405-pf17399.yaml" } ], "pfam_ids": [ "PF17399" ], "protein_name": "Uncharacterized 11.3 kDa protein in GpA 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFCSRAVVLLNNALKIAVMKNGDLSLIQLGLDKEKREITESVIAIYQSELNLLSDVVNLLVKRAVFHKQISSVDELTKLTTEIASYCADEFKKLNDKRNW", "sequence_length": 100, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3c324f5cc9dc0fccf96fafc9a16124d58db743406ce90a1c5b8ca4126a47a3f2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06423.json", "taxon_id": "2905681", "uniprot_accession": "Q06423", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage P2", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5405-pf17399.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17399", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5405-pf17399.yaml" } ], "pfam_ids": [ "PF17399" ], "protein_name": "Uncharacterized 10.2 kDa protein in GpA 5'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSIRIEIGERYVVTSDSFQFILHEKKRAESGKNAGQEWLAVVGYYPKLSQLVSGLMHHDILTGSAKSFADLNVQVEQLSKRCSEAFGSYGR", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c4d1bf043b883ae09b3179993b9f13f9969c3f4b6823c6c38719fd9bc1353af0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06425.json", "taxon_id": "2905681", "uniprot_accession": "Q06425", "uniprot_release": "2026_03" } ], "pfam_id": "PF17399", "short_name": "DUF5405", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterococcus faecalis (strain ATCC 700802 / V583)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5406-pf17400.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17400", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5406-pf17400.yaml" } ], "pfam_ids": [ "PF17400" ], "protein_name": "Uncharacterized protein EF_A0048", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNYDPNIRWGLHTIKVSFQRGVYKGFVTFVKSGNCKGLDVLGIDEEDLYDMKFKENPINFRLLGEDDNGDEWFAMTLKNDKKDELLVEDVWEELSEYIVRIEIIDFEEEK", "sequence_length": 111, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2a22c89d92cffb982c926e7391497735ad92f29eccd27ad60bc8d9fd2f35af29", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P18007.json", "taxon_id": "226185", "uniprot_accession": "P18007", "uniprot_release": "2026_03" } ], "pfam_id": "PF17400", "short_name": "DUF5406", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5407-pf17401.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5407-pf17401.yaml" } ], "pfam_ids": [ "PF17401" ], "protein_name": "Uncharacterized protein CT_666", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASGSCSAFNFNQMLDGVCKYVQGVQQYLTELETSTQGTVDLGTMFNLQFRMQILSQYMESVSNILTAVNTEMITMARAVKGS", "sequence_length": 83, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9630553c25701b4e77cdf57e6f2b03f8164acd2affa57a525d5b753a84739604", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O84673.json", "taxon_id": "272561", "uniprot_accession": "O84673", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5407-pf17401.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5407-pf17401.yaml" } ], "pfam_ids": [ "PF17401" ], "protein_name": "Uncharacterized protein CPn_0710/CP_0036/CPj0710/CpB0737", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATNKSCTAFDFNKMLDGVCTYVKGVQQYLTELETSTQGTVDLGTMFNLQFRMQILSQYMESVSNILTAVNTEMITMARAVKGS", "sequence_length": 84, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c6aa504598b73dcbf412f91eaa43460394351c7e597916189dc88e280509f71", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z7J5.json", "taxon_id": "83558", "uniprot_accession": "Q9Z7J5", "uniprot_release": "2026_03" } ], "pfam_id": "PF17401", "short_name": "DUF5407", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Helicobacter pylori (strain ATCC 700392 / 26695)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5408-pf17402.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17402", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5408-pf17402.yaml" } ], "pfam_ids": [ "PF17402" ], "protein_name": "Uncharacterized protein HP_0085", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQKEQEAQEIAKKAVKIVFFLGLVVVLLMMINLYMLINQINASAQMSHQIKKIEERLNQEQK", "sequence_length": 62, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "36111a81aa04723eb027b345ef4bfcc07947afd1515c3a91899c5c0daf4d3131", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64651.json", "taxon_id": "85962", "uniprot_accession": "P64651", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Helicobacter pylori (strain J99 / ATCC 700824)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5408-pf17402.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17402", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5408-pf17402.yaml" } ], "pfam_ids": [ "PF17402" ], "protein_name": "Uncharacterized protein jhp_0078", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQKEQEAQEIAKKAVKIVFFLGLVVVLLMMINLYMLINQINASAQMSHQIKKIEERLNQEQK", "sequence_length": 62, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "36111a81aa04723eb027b345ef4bfcc07947afd1515c3a91899c5c0daf4d3131", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64652.json", "taxon_id": "85963", "uniprot_accession": "P64652", "uniprot_release": "2026_03" } ], "pfam_id": "PF17402", "short_name": "DUF5408", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Swinepox virus (strain Kasza)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5409-pf17421.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17421", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5409-pf17421.yaml" } ], "pfam_ids": [ "PF17421" ], "protein_name": "Uncharacterized protein C2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSYIINPLLSIVYFILGNVSKLLTYILMKIMIFLLRAVNPYSLISNRGWLSLDSINPFKKEKRRESFLSSLNPFRKEETKKKEGFFSGWFG", "sequence_length": 92, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "14e1adc8e7b87cdb11c6d8b93db108a3fdc79b6f917452c7f100f51f8c4968d8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P32230.json", "taxon_id": "10277", "uniprot_accession": "P32230", "uniprot_release": "2026_03" } ], "pfam_id": "PF17421", "short_name": "DUF5409", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5410-pf17422.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17422", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5410-pf17422.yaml" } ], "pfam_ids": [ "PF17422" ], "protein_name": "Uncharacterized protein RP364", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATKNKKEIVNTETKNLANLIIKEISKESFDFGILQKMQQAFSTASKQKQREAFINILDTKLDKEQLHKLNQTIMKNANELMPDNDPNFVCRTSNNKVFQEILLLEAKRSGMQARFSDTGALQSLDIKDITPEILDHYRVLQEKFYLKRNSKDSVDSRIAQSINFLLYAPLFRESDIYKKLGLKSAEIEREIQDPNGKYVQQLIDAKIGSNIPFHMQKNNVNEGKEIERTAIIEKAITKFEQDKKFSFEGKKRDEITKYLSKSLEGASDYILTFKKNELVDVIYQGLDKGQTLWSKVANYIGIKSYSISKENLKSVAKIINDKIKSSHTPLKIEVQDKLKQISKELNRLNNPVLPSEAQKVQVKSNKKPPIAPKPEHLKKRDHGLC", "sequence_length": 386, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3adb8a238c25d575c6fc11d0fba219473d8ef33232d766a30d8d91fce7bb1b1b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZDG5.json", "taxon_id": "272947", "uniprot_accession": "Q9ZDG5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5410-pf17422.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17422", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5410-pf17422.yaml" } ], "pfam_ids": [ "PF17422" ], "protein_name": "Uncharacterized protein RP363", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQHAPDLVHSKDLTFVLRLDNEDILRKLFYLEAKRNNFSVEINEEWTLKINFPSKILELYKLLINNFYLKNFAKEELQKELYKELFPNCQIPFEQLIEEVSFFENFIECLKEFYIKKSLAQSIMFLLVSKYIEEHDVAKSLFKSESFKKVSELEKFKPYYDINKCDEVDNYVFNCILNDVKGPYIKNLSSSILDLVNHCQPDCEIVSIEILGNSAVLV", "sequence_length": 218, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c6d1c389cf20b515c448aa1c79b7d6d6efc2459eb573896a8f3d01c554a8706d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZDG6.json", "taxon_id": "272947", "uniprot_accession": "Q9ZDG6", "uniprot_release": "2026_03" } ], "pfam_id": "PF17422", "short_name": "DUF5410", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17424", "short_name": "DUF5411", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17428", "short_name": "DUF5412", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Plasmodium falciparum (isolate 3D7)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3458-pf11940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3458-pf11940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf3458-c-pf17432.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17432", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf3458-c-pf17432.yaml" } ], "pfam_ids": [ "PF01433", "PF11940", "PF17432", "PF17900" ], "protein_name": "Aminopeptidase N", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLTKGCAYKYIIFTVLILANILYDNKKRCMIKKNLRISSCGIISRLLKSNSNYNSFNKNYNFTSAISELQFSNFWNLDILQKDIFSNIHNNKNKPQSYIIHKRLMSEKGDNNNNNHQNNNGNDNKKRLGSVVNNEENTCSDKRMKPFEEGHGITQVDKMNNNSDHLQQNGVMNLNSNNVENNNNNNSVVVKKNEPKIHYRKDYKPSGFIINNVTLNINIHDNETIVRSVLDMDISKHNVGEDLVFDGVGLKINEISINNKKLVEGEEYTYDNEFLTIFSKFVPKSKFAFSSEVIIHPETNYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPHLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHNYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPIRPESYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAMEQAYKMKKADNSANLNQYLLWFSQSGTPHVSFKYNYDAEKKQYSIHVNQYTKPDENQKEKKPLFIPISVGLINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDNLTDEERILLLKYDSDAFVRYNSCTNIYMKQILMNYNEFLKAKNEKLESFNLTPVNAQFIDAIKYLLEDPHADAGFKSYIVSLPQDRYIINFVSNLDTDVLADTKEYIYKQIGDKLNDVYYKMFKSLEAKADDLTYFNDESHVDFDQMNMRTLRNTLLSLLSKAQYPNILNEIIEHSKSPYPSNWLTSLSVSAYFDKYFELYDKTYKLSKDDELLLQEWLKTVSRSDRKDIYEILKKLENEVLKDSKNPNDIRAVYLPFTNNLRRFHDISGKGYKLIAEVITKTDKFNPMVATQLCEPFKLWNKLDTKRQELMLNEMNTMLQEPNISNNLKEYLLRLTNKL", "sequence_length": 1085, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "35262d052c4961936783bc77720774eb1e87d9d246064d58510c3d5192cc4b09", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O96935.json", "taxon_id": "36329", "uniprot_accession": "O96935", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3458-pf11940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3458-pf11940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf3458-c-pf17432.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17432", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf3458-c-pf17432.yaml" } ], "pfam_ids": [ "PF01433", "PF11940", "PF17432", "PF17900" ], "protein_name": "Aminopeptidase N", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEGALVISNLPERFTLKIINEISPAANTALEGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQFAEDASPMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQSGTPIVTVKDDYNPETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKVIPLQKGGHPVNSVLNVTQAEQTFVFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDEKIDPALAAEILTLPSVNEMAELFDIIDPIAIAEVREALTRTLATELADELLAIYNANYQSEYRVEHEDIAKRTLRNACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKWHQNGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAEDGSGYLFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLENLSGDLYEKITKALA", "sequence_length": 870, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b3c347b262ed5fa67eacda42b7e62bc2df9f80be6e00aaa7cd270e0f04293317", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P04825.json", "taxon_id": "83333", "uniprot_accession": "P04825", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3458-pf11940.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11940", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3458-pf11940.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf3458-c-pf17432.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17432", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf3458-c-pf17432.yaml" } ], "pfam_ids": [ "PF01433", "PF11940", "PF17432", "PF17900" ], "protein_name": "Puromycin-sensitive aminopeptidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDAPKEIFLKNYTKPDYYFETVDLSFSLGEEKTIVSSKIKVSPRVKGSSAALVLDGHDLKLLSVKVEGKLLKEGDYQLDSRHLTLPSLPAEESFVLEIDTEIYPHKNTSLEGLYKSSGNFCTQCEAEGFRKITFYQDRPDIMAKYTCRVEGDKTLYPVLLSNGNLISQGDIEGGRHYALWEDPFKKPCYLFALVAGQLVSRDDTFTTRSGRQVSLKIWTPAEDLPKTAHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETATDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRTVKRIADVSKLRIYQFPQDAGPMAHPVRPHSYIKMDNFYTVTVYEKGAEVVRMYKTLLGTQGFRKGIDLYFERHDEQAVTCEDFFAAMRDANNADFANFLQWYSQAGTPVVKVVSSYNADARTFSLKFSQEIPPTPGQPTKEPTFIPVVVGLLDSSGKDITLSSVHHDGTVQTISGSSTILRVTKKEEEFVFSDIPERPVPSLFRGFSAPVRVETDLSNDDLFFLLAHDSDEFNRWEAGQVLARKLMLNLVSDFQQNKPLALNPKFVQGLGSVLSDSSLDKEFIAKAITLPGEGEIMDMMAVADPDAVHAVRKFVRKQLASELKEELLKIVENNRSTEAYVFDHSNMARRALKNTALAYLASLEDPAYMELALNEYKMATNLTDQFAALAALSQNPGKTRDDILADFYNKWQDDYLVVNKWFLLQSTSDIPGNVENVKKLLDHPAFDLRNPNKVYSLIGGFCGSPVNFHAKDGSGYKFLGDIVVQLDKLNPQVASRMVSAFSRWKRYDETRQGLAKAQLEMIMSANGLSENVFEIASKSLAA", "sequence_length": 883, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b4d070b42e886c33e3b5771d43f51f221335a22cad37620794e80aeacfa39698", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8H0S9.json", "taxon_id": "3702", "uniprot_accession": "Q8H0S9", "uniprot_release": "2026_03" } ], "pfam_id": "PF17432", "short_name": "DUF3458_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17434", "short_name": "DUF5413", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ct-584-like-pf17435.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17435", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ct-584-like-pf17435.yaml" } ], "pfam_ids": [ "PF17435" ], "protein_name": "Protein CT_584", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTKPKTLEIDNNTFLLLEGNLKRIFATPIGYTTFREFQNVVFNCAQGQQELANFLFEMLINGKLLQELPAGQKQSAQSLIVQFMMPIRVAKDIHERGEFINFITSDMLAQQERCVFLNRLSRVDGQEFLLMTDVQNTCHLIRHLLSRLLEAQKNPIGEKNLQEIQEDLDSLRAHFEELTKSV", "sequence_length": 183, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "76faf2398a819cc3b111d54555dded1af47fb5f12eee46c60f826e12e72cb06a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O84588.json", "taxon_id": "272561", "uniprot_accession": "O84588", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia muridarum (strain MoPn / Nigg)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ct-584-like-pf17435.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17435", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ct-584-like-pf17435.yaml" } ], "pfam_ids": [ "PF17435" ], "protein_name": "Uncharacterized protein TC_0873", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTKSKTLEIDNNTFLLLEGNLKRIFATPIGYTTFREFQNVIFNCAQGQQELANFLFEMLINGKLLQELPAGQKQSAQSLIVQFMMLIRVAKDIHERGEFINFITSDMLAQQERCVFLNRLSRVDGQEFLLMTDVQNTCHLIRHLLSRLLEAQKNPIGEKNLQEVQEDLDSLRAHFEELTKSM", "sequence_length": 183, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "357fe9c598356198162247c88d5ad5749a81b11046ef7f31028409003b0f539f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9PJF6.json", "taxon_id": "243161", "uniprot_accession": "Q9PJF6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ct-584-like-pf17435.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17435", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ct-584-like-pf17435.yaml" } ], "pfam_ids": [ "PF17435" ], "protein_name": "Protein CPn_0803/CP_1068/CPj0803/CpB0832", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAKTKTLELEDNVFLLLEGNLKRIFATPIGYTTFREFQNVVFNCANGQQEIANFFFEMLINGKLTQELAPQQKQAAHSLIAEFMMPIRVAKDIHERGEFINFITSDMLTQQERCIFLNRLARVDGQEFLLMTDVQNTCHLIRHLLARLLEAQKNPVGEKNLQEIQEEITSLKNHFDELTKALQ", "sequence_length": 184, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9508cb8ee082ba40be88becd2405e2cb92740d3e3b66622262dfc3ddfcb6f579", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z7A3.json", "taxon_id": "83558", "uniprot_accession": "Q9Z7A3", "uniprot_release": "2026_03" } ], "pfam_id": "PF17435", "short_name": "CT_584-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17436", "short_name": "DUF5415", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5416-pf17437.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17437", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5416-pf17437.yaml" } ], "pfam_ids": [ "PF17437" ], "protein_name": "Uncharacterized protein Cj0990c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSNVDLLEFSDDSFTFEEIVKHFNICDTEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEKIIHENTKQTSMQFKNLKFFSRIFKNENFLSDFKESKQEVVTIKKHEKLEIFKNLSQEDQEISFVKIEILNYDSNEDSLSFNLDIFPSGMSYKYGILKGSMHIILQGKTSSTMLFPFLKSMIYKNKSENSSEKIFTLMINQKKHYKLIANLS", "sequence_length": 253, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "db99ae952b8161d7a3a630dbcf3e380fadcec03221aed0214cbef390f73bfab3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P45489.json", "taxon_id": "192222", "uniprot_accession": "P45489", "uniprot_release": "2026_03" } ], "pfam_id": "PF17437", "short_name": "DUF5416", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5417-pf17438.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17438", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5417-pf17438.yaml" } ], "pfam_ids": [ "PF17438" ], "protein_name": "Uncharacterized 9.5 kDa protein in frd-Gp32 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRLQRQSIKDSEVRGKWYFNIIGKDSELVEKAEHLLRDMGWEDECDGCPLYEDGESAGFWIYHSDVEQFKADWKIVKKSV", "sequence_length": 80, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "db97f42ba6a5df872fc2195dc8f7f23b568fbbfd97f6e0d3fa064c1112af9a6f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P39506.json", "taxon_id": "10665", "uniprot_accession": "P39506", "uniprot_release": "2026_03" } ], "pfam_id": "PF17438", "short_name": "DUF5417", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5418-pf17439.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17439", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5418-pf17439.yaml" } ], "pfam_ids": [ "PF17439" ], "protein_name": "Uncharacterized protein MJ0129", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSFVVMSFLIFVIVMVNEHKAHLSVIQKMILAVVNGSITIILSIIVFYIFYPQNISLFLITAGILTVFVFLYGLLLFLFGFTHRELSYLSKYDKYKFLCKFTIEMFSSLTNHAFLTISAIVLYQIQHPKPTIDFIVMIGMITISVIVVMLLFLKTYSIIIKQLKKLENN", "sequence_length": 170, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0fc7e979b2bce5ddca2d5f863036dc23dda9f8cc8ade925e09bdd9d08dbc1232", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57593.json", "taxon_id": "243232", "uniprot_accession": "Q57593", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5418-pf17439.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17439", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5418-pf17439.yaml" } ], "pfam_ids": [ "PF17439" ], "protein_name": "Uncharacterized protein MJ0554", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVNEHKAHASFMFKIINVFVSFGFNLILGILIYDIFFNIDENLVVACILIAMPIIAFLILILTGGVHKELTYLQIYDKYKLMCEFIREITISTITSELATIATMILYQLQNPIKTITFLLLLIAFLAFGLIFTKLLIDAYFITLKKLKSLKE", "sequence_length": 152, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "83a42981c074e52dea8154ff04624dacf6b4e7f1a1f72e2c483699ccb6d49c2f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57974.json", "taxon_id": "243232", "uniprot_accession": "Q57974", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5418-pf17439.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17439", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5418-pf17439.yaml" } ], "pfam_ids": [ "PF17439" ], "protein_name": "Uncharacterized protein MJ0587", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVNEYKAHSSFILKVVITLIGYWIASILAIIIYSMFFKIETNTFLLCLLLPTPIIWFNILIGMGLTYRCMENLTIYDKHKLWCVFVRDLTLTILATILATLTTMELYQIEHPLKPIEFVFIVGLVLIVGFTIITTLIIKYLKIIKNLKKISKN", "sequence_length": 153, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8df239fae4a15aeb8ee456064e5cc6d5ebb7189820187b1130b1fef712cfe0bd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58007.json", "taxon_id": "243232", "uniprot_accession": "Q58007", "uniprot_release": "2026_03" } ], "pfam_id": "PF17439", "short_name": "DUF5418", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium phage D29", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5419-pf17441.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17441", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5419-pf17441.yaml" } ], "pfam_ids": [ "PF17441" ], "protein_name": "Gene 87 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFHLWMANLDAYMQETFGVGRRDIADWTYHDAYDDGLTFREAAHQAIANELGS", "sequence_length": 54, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "622cdf19e7401d61737e4d1bf05a3e9797b25b82b8ee4dc543e57c5982652bc2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O64268.json", "taxon_id": "28369", "uniprot_accession": "O64268", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium phage L5", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5419-pf17441.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17441", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5419-pf17441.yaml" } ], "pfam_ids": [ "PF17441" ], "protein_name": "Gene 87 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFETWMAALDGYMTETFGLGYQDIADWTYRDAYDDGLTFREAAHRAINHEFL", "sequence_length": 53, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4093f923791084d61c8658b94d7e94ffba973bc4728411dfedee89d67903da84", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q05304.json", "taxon_id": "31757", "uniprot_accession": "Q05304", "uniprot_release": "2026_03" } ], "pfam_id": "PF17441", "short_name": "DUF5419", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5420-pf17457.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17457", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5420-pf17457.yaml" } ], "pfam_ids": [ "PF17457" ], "protein_name": "Uncharacterized protein HI_1487", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNAIQFRYFKGVMTKEPLKTIIDTWYKLRAERDKKLTNIFNTIPFYESWLGDETSIFGIVCSYDNPARDEAVLTKGYRTEDYKGKCVVKPDRRYKVGKDFDKKLQAIRQILKEAPDFSSYSLKELGMYLLVGNFSRLYFSVSGVQDDIYIAKIPVKEQGNFGDDFLEIHECLTEIKESEFLSIQGL", "sequence_length": 186, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99eb91afc5a13f005a29f9f9d3643e6d08971e877d6ee14b87df0c57303db69b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44214.json", "taxon_id": "71421", "uniprot_accession": "P44214", "uniprot_release": "2026_03" } ], "pfam_id": "PF17457", "short_name": "DUF5420", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5421-pf17458.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5421-pf17458.yaml" } ], "pfam_ids": [ "PF17458" ], "protein_name": "Uncharacterized protein CT_671", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELNKTSESLFSAKIDHNHPRTEAHEPRDQREVRVFSLEGRSSTRQEKADRMPGRTSSRQESSKGSEEGAVHESTAGVSSKEEEESKGDGFFTGGNPTSGMALVETPMAVVSEAMVETSTMTVSQVDLQWVEQLVTSTVESLLVADIDGKQLVEIVLDNSNTVPAAFCGANLTLVQTGEEISVSFSNFVDQAQLTEATQLVQQNPKQLVSLVESLKARQLNLTELVVGNVAVSLPTIEKIETPLHMIAATIRHHDQEGDQEGEGRQDQHQGQHQEKKVEEAHI", "sequence_length": 283, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4ad3c5d8d2d8de1489a8af4594f541da7b4d0f607b43c1cb11a4b2484577e327", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O84678.json", "taxon_id": "272561", "uniprot_accession": "O84678", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia muridarum (strain MoPn / Nigg)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5421-pf17458.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5421-pf17458.yaml" } ], "pfam_ids": [ "PF17458" ], "protein_name": "Uncharacterized protein TC_0042", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVNKTTESLFSAKVEHNHAQAESHEPRDQRDVKVFSLGGKSSSKQEKLDHGSGRTSSRHETSRSSKEGSIEDKSAEVSSREEEEENRDGFLSGGNLTAGVAFTDTPMAVASEVMIETNAVTMSQIDLQWVEQLVLSTVESLLVADVDGKQLVEIVLDNNSTVPEAFCGANLTLVQTGEDVAVTFSNFVDQDQVAEAMQLVQQNPEQLTSLVESLKSRQLNLTELVVGNVAVSLPVLEKVETPLHMIAATIRHHDQEGDQEGEGRQEQHQGRQQEKKLEEAQI", "sequence_length": 283, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b9920bde934c75b60b34543c648085ef83bcdfdbfd7814aa5fff85c0ec1be292", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9PLQ3.json", "taxon_id": "243161", "uniprot_accession": "Q9PLQ3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5421-pf17458.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5421-pf17458.yaml" } ], "pfam_ids": [ "PF17458" ], "protein_name": "Uncharacterized protein CPn_0705/CP_0041/CPj0705/CpB0732", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELKKTAESLYSAKTDNHTVYQNSPEPRDSRDVKVFSLEGKQTRQEKTTSSKGNTRTESRKFADEEKRVDDEIAEVGSKEEEQESQEFCLAENAFAGMSLIDIAAAGSAEAVVEVAPIAVSSIDTQWIENIILSTVESMVISEINGEQLVELVLDASSSVPEAFVGANLTLVQSGQDLSVKFSSFVDATQMAEAADLVTNNPSQLSSLVSALKGHQLTLKEFSVGNLLVQLPKIEEVQTPLHMIASTIRHREEKDQRDQNQKQKQDDKEQDSYKIEEARL", "sequence_length": 280, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c00ca5da23931a1dc6d03fa6bc5b392eaffd7eaeb3c352cc5c705a3e8eb6d724", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z7K0.json", "taxon_id": "83558", "uniprot_accession": "Q9Z7K0", "uniprot_release": "2026_03" } ], "pfam_id": "PF17458", "short_name": "DUF5421", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5422-pf17459.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17459", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5422-pf17459.yaml" } ], "pfam_ids": [ "PF17459" ], "protein_name": "Uncharacterized protein CT_006", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPSTVAPIKGQDHFLNLVFPERVAAAYMSPLAQKYPKAALSIASLAGFLLGILKLITFPVLCAAGLFVFPIRGLISCLFHKSFQGCSGYVLATFLSLFSLALTIVGIVSCITWAPGFIFPMISVSIAFATVETCFQIYTHLFPALEHKPSSSLKIEIAAAKLPRSSSAPDLNYPSLPTQSASPSQRFSA", "sequence_length": 189, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1b90cb5bf53b7ce96a011aa3fca0db4dfd171eeffd03fb79c146e9fe0ad61b1c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O84009.json", "taxon_id": "272561", "uniprot_accession": "O84009", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia muridarum (strain MoPn / Nigg)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5422-pf17459.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17459", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5422-pf17459.yaml" } ], "pfam_ids": [ "PF17459" ], "protein_name": "Uncharacterized protein TC_0274", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPSTVAPVKGPDHFLNLVFPERVFASYMSPLAQKHPKAALYIASLAGFIFGLLKLITFPVLCAAGLFVFPIKGIISSLCHRRLDACSGYMLATFLSLFSLALIIVGIVSCVAWAPEFIFPIISIGMALATTETCFQIYTHLFPALEHKPSSPLKIENTTTKLSRSSSAPDLSCPSLSTQPTSPNQSLSAYKKY", "sequence_length": 193, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f214a2b5af14d49e6e5d090f804b79789980cbbac24b79a3f803436e93da719a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9PL34.json", "taxon_id": "243161", "uniprot_accession": "Q9PL34", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5422-pf17459.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17459", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5422-pf17459.yaml" } ], "pfam_ids": [ "PF17459" ], "protein_name": "Uncharacterized protein CPn_0442/CP_0311/CPj0442/CpB0458", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFKNICKQGSQLYLNGIFPERILARKLKNCAKSYPRTALTIEVLVSSVLGALKVILIPCASTYAALTLPLRALFNAIKTKSCQHLASYAMAWLLNILTIAVIIGLVFSLVFIPPPVVFISLGLLMSVTTSVTLFQVHKNLFPPYEPPPSRPHTPPPFADEYVPLISESYFD", "sequence_length": 172, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7e4d2e7cc17fdf91808d2b7024011797bec2ef12acf8a37127538f603ffd9450", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z8A1.json", "taxon_id": "83558", "uniprot_accession": "Q9Z8A1", "uniprot_release": "2026_03" } ], "pfam_id": "PF17459", "short_name": "DUF5422", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5423-pf17461.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17461", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5423-pf17461.yaml" } ], "pfam_ids": [ "PF17461" ], "protein_name": "Uncharacterized protein CT_005", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTPVTPVPPQSPQQVKGLLSRFLTAPDRHPKLRYVYDIALIAISILCIVSIILWTQGSGLALFAIAPALAIGALGVTLLVSDLAESQKSKEIADTVAAVSLPFILTGTAAGLMFSAIAVGGGAVILANPLFLMGSMTLGFALMSLHRVTYQYLSNREQWKQQKKLEQVELAAWESHLPKESKSSALEEVRYSPRLMKRGKTWRKRAIRRKNYTPIPLVDKTLQTMQPDALFSSTTTHSTDSEQILTSVSPQSSDTESSSSSSFHTPPNSDKELSDSNSSDSSSSSEYMDALETVAAGDVSGITPPSKPSSSPKTTRRVVKLSRSERNAQHHRNKDQEQRQDSSESSEEDSSSDSSQKKKPSRK", "sequence_length": 363, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c498dc846ef9a43061a27eedf16bcec22c6457be82de7e1ae8bedbfd14ac358", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O84008.json", "taxon_id": "272561", "uniprot_accession": "O84008", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia muridarum (strain MoPn / Nigg)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5423-pf17461.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17461", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5423-pf17461.yaml" } ], "pfam_ids": [ "PF17461" ], "protein_name": "Uncharacterized protein TC_0273", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVKIMAPITPTTSPQVKGLLSRFLTAPDRHPKLRYVYDISLIAISILCIVSIILWTQGSGLALFAIAPALAIGALGVTLLVSDLAESPKSKEVADTVAAVSLPFILTGTAAGLMFSAIAVGGGAVILANPLFLMGSMTLGFALMSLHKVTYQYLSNRSQWQKQNKIKQIESAAWENKLPKESKESSLQTSVRYSSLARKDKTRRNKPGMPNKGSQVPASIANTERSLRSEEVLHSQSLLRQKELFPNTSNIKKELPNTKSILHTPLNRRSPSGSDSDDVYYTPRAGLSSAETSALGDISGISSSSTSSKTSTPKAKRRVVRSSRSERNARHHRNKEDHRQNQEESSDDEDSSPLPSPRRKKYRSRPK", "sequence_length": 367, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0f6e14eb818bcb11c31958eece715d31dbbb5668556f1e16f60d93f8d9eb987b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9PL35.json", "taxon_id": "243161", "uniprot_accession": "Q9PL35", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5423-pf17461.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17461", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5423-pf17461.yaml" } ], "pfam_ids": [ "PF17461" ], "protein_name": "Uncharacterized protein CPn_0443/CP_0310/CPj0443/CpB0459", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQPPINPLGQPQVPAAASPSGQPSVVKRLKTSSTGLFKRFITVPDKYPKMRYVYDTGIIALAAIAILSILLTASGNSLMLYALAPALALGALGVTLLISDILDSPKAKKIGEAITAIVVPIIVLAIAAGLIAGAFVASSGTMLVFANPMFVMGLITVGLYFMSLNKLTLDYFRREHLLRMEKKTQETAEPILVTPSADDAKKIAVEKKKDLSASARMEEHEASQRQDARHRRIGREAQGSFFYSSRNPEHRRSFGSLSRFKTKPSDAASTRPASISPPFKDDFQPYHFKDLRSSSFGSGASSAFTPIMPASSRSPNFSTGTVLHPEPVYPKGGKEPSIPRVSSSSRRSPRDRQDKQQQQQNQDEEQKQQSKKKSGKSNQSLKTPPPDGKSTANLSPSNPFSDGYDEREKRKHRKNK", "sequence_length": 417, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0365a5a132c7699422929ede45650ad0921ad6810c69da9ecedce575d8a127c9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z8A0.json", "taxon_id": "83558", "uniprot_accession": "Q9Z8A0", "uniprot_release": "2026_03" } ], "pfam_id": "PF17461", "short_name": "DUF5423", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia conorii (strain ATCC VR-613 / Malish 7)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5424-pf17462.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17462", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5424-pf17462.yaml" } ], "pfam_ids": [ "PF17462" ], "protein_name": "Uncharacterized protein RC0060", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNSNYENIYKAFYCFSEATNSAYSAINTFLELPNVFNKYPAVISLIFSKTATLDSNINNIIKNGVIIYDISTALIGAINTFYKDKKLVNKILKDGQNAIDKLIETTTYLSPIVTDITNSYLVDPYKEENALLFDLQIPNSTSSDYYKLSGTESITLAEIEYY", "sequence_length": 163, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b688dfb3c8e2b92bb748d4e75bc4c3a3775a833f2e0d6dbdd006d8f979773cb0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q92JK7.json", "taxon_id": "272944", "uniprot_accession": "Q92JK7", "uniprot_release": "2026_03" } ], "pfam_id": "PF17462", "short_name": "DUF5424", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5425-pf17472.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17472", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5425-pf17472.yaml" } ], "pfam_ids": [ "PF17472" ], "protein_name": "Uncharacterized lipoprotein BBF20", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKKFSISLLSTILAFLLVLGCDLSSNNAENKMDDIFNLEKKYMDNSNYKCLSKNEAIVKNSKIKLGVNNTRSRSYSSRETNVSDSYNKTYSYCKSN", "sequence_length": 97, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e15a92ef8411a72434509d54f5e311de6610282bc0354327576fd8d788df9e2f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O51025.json", "taxon_id": "224326", "uniprot_accession": "O51025", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5425-pf17472.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17472", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5425-pf17472.yaml" } ], "pfam_ids": [ "PF17472" ], "protein_name": "Uncharacterized membrane protein BB_D15", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLNFKFLKCVYLCFMVFVRLILIIKFRGKKFMNRKFVISLLFIILTFLLILGCDLSINNDRNKIDGASHFKKKYMDNLNYQCLSKKESEAKNSQIKLDENNNKNHFYSSRVSNVSNYYDRTHISCKKND", "sequence_length": 129, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dc00f84c90ab24d05b142f2b993460b7bc04f52a034502994b5dd1ef7a2eb25c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P70841.json", "taxon_id": "224326", "uniprot_accession": "P70841", "uniprot_release": "2026_03" } ], "pfam_id": "PF17472", "short_name": "DUF5425", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5426-pf17473.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5426-pf17473.yaml" } ], "pfam_ids": [ "PF17473" ], "protein_name": "Uncharacterized protein MG074 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKLIKLNVIVFVLLYLGELFASLSFKLISCLKTRNQYSLNGYYALFVFVNIIQKMANSFQKLASSVVLFETEINEFLVLFTDTKNKREESEPVRQVSTTQEYHQVTLDQQHYFNHKLSDYFRLFKDKTFFFEII", "sequence_length": 135, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b772bc76fdbcd30055362e9abd9479707af12b33d0abd63df60afce589701006", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0CJ80.json", "taxon_id": "272634", "uniprot_accession": "P0CJ80", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5426-pf17473.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5426-pf17473.yaml" } ], "pfam_ids": [ "PF17473" ], "protein_name": "Uncharacterized protein MG074", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRQFIKLSLLVFVLLFLSELICRFSLRLVNSIKARYKSSVFSYTACLLFLKSFQNFSNAFQKLANWVFWFENDVNELLSIFYFNFDQKSEKVDYNFFNGYKVTAQKVVEKEQLLTCKLSDYYRLFRDKTFWFELINN", "sequence_length": 137, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a6981bdbf4901a21cfdb2a23386d5d936fe3e30f115bd58bd9a75a625ce4b7ae", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47320.json", "taxon_id": "243273", "uniprot_accession": "P47320", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5426-pf17473.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17473", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5426-pf17473.yaml" } ], "pfam_ids": [ "PF17473" ], "protein_name": "Uncharacterized protein MG441", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVSFLRSKFSLKASVFAFFVLFLFCLKIILVLFRNFGKRFKHFLFNQTSLYLLVRLFQKTEIVWNLIANIHFFIKTQIQNLGIRLSRESISNETFQAVKLFHVNNLGLQEQEVINSKLSDYFCFFKYRNLLFVNW", "sequence_length": 136, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "efc48417ff13bafec84bae3c130a40f35e758faa29ae753258e188fad25e4afa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47679.json", "taxon_id": "243273", "uniprot_accession": "P47679", "uniprot_release": "2026_03" } ], "pfam_id": "PF17473", "short_name": "DUF5426", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf3048-c-terminal-domain-ipr035328.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035328", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf3048-c-terminal-domain-ipr035328.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf3048-n-terminal-ipr021416.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021416", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf3048-n-terminal-ipr021416.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3048-c-pf17479.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17479", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3048-c-pf17479.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf3048-pf11258.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf3048-pf11258.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/homologous_superfamily/interpro/yerb-like-superfamily-ipr023158.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR023158", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yerb-like-superfamily-ipr023158.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/yerb-like-3-50-90-10.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.50.90.10", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yerb-like-3-50-90-10.yaml" } ], "pfam_ids": [ "PF11258", "PF17479" ], "protein_name": "Putative lipoprotein YerB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKWMTVCALCFVFFLLVSCQQKDAVPDTAKKLKAPLTGLKTEQKVTERRPVAVVVNNHPKARPQSGLSKADIVIEALAEGQITRFLAIFQSQMPETVGPVRSAREYFVTLSNGFDSIFVHHGWSPGAKKQLESGAADYMNGLDFDGSLFWRADFSKPPHNSYTSYDYIKKAAEQKGYKLKQETNPLLFQTSDAKPANESYNVRVDYGTNNVTNLVEYNYDKKAEFYTRSSDGVITTDRETGKPVAMQNIFIVEASHHIIDQDGRRDIDLESGGKGLLFQHGNVIETDWKQVNGRIVPVKDGKWLPFVPGKTWINIVPDLDAASISKGEGV", "sequence_length": 331, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "96da82a59f699bf922c5212038822b3db1e7c97a7301ba12891b2c849b7f401e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O34968.json", "taxon_id": "224308", "uniprot_accession": "O34968", "uniprot_release": "2026_03" } ], "pfam_id": "PF17479", "short_name": "DUF3048_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Tobacco necrosis virus (strain D)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5428-pf17493.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17493", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5428-pf17493.yaml" } ], "pfam_ids": [ "PF17493" ], "protein_name": "Probable movement protein p8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENTENVRSGRNQREYSKERQQEGGYKEVSKAAVRKEGDVKQDMGPSVSMTVVGEKVEFTQHFHF", "sequence_length": 65, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6f2dd875522b45d8b75ff79392689ae377e4ffd6885896c1c3dab1839ef0c2c9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P27211.json", "taxon_id": "12056", "uniprot_accession": "P27211", "uniprot_release": "2026_03" } ], "pfam_id": "PF17493", "short_name": "DUF5428", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human cytomegalovirus (strain AD169)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5429-pf17494.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17494", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5429-pf17494.yaml" } ], "pfam_ids": [ "PF17494" ], "protein_name": "Uncharacterized protein UL131", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCMMSHNKAFFLSLQHAAVSGVAVCLSVRRGAGSVPAGNRGKKTIITEYRITGTRALARCPTKPVTSMWNSSWTSR", "sequence_length": 76, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f08d5557f274e5f9f21fb95211ecf093a0997fa8c2e0d9a53c8fb55ad2844a66", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P16773.json", "taxon_id": "10360", "uniprot_accession": "P16773", "uniprot_release": "2026_03" } ], "pfam_id": "PF17494", "short_name": "DUF5429", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17495", "short_name": "OrfA", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/modulator-of-post-segregation-killing-protein-nf010277.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF010277", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/modulator-of-post-segregation-killing-protein-nf010277.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5431-pf17496.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17496", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5431-pf17496.yaml" } ], "pfam_ids": [ "PF17496" ], "protein_name": "Protein FlmC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRQHQDSLLLRFAQGEEGHETTTQLSCLVCVDRVSHTVDIHLSDTKIAVRDSLQRRIQGGGGFHGLRIR", "sequence_length": 70, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c28d8546195374b6d7c3024552c242c2023bc90173356b45eee3300970d1ce97", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P11519.json", "taxon_id": "83333", "uniprot_accession": "P11519", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5431-pf17496.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17496", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5431-pf17496.yaml" } ], "pfam_ids": [ "PF17496" ], "protein_name": "Protein FlmC homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSPHQDSLLPRFAQGEEGHETTTKFPCLVCVDRVSHTVDIHLSDTKIAVRDSLQRRTQGGGGFHGLRIR", "sequence_length": 70, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "14d68faa6a02195720bfbf93151594fafe10580a1da0db4ca7c5749e21fdc09f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P23587.json", "taxon_id": "562", "uniprot_accession": "P23587", "uniprot_release": "2026_03" } ], "pfam_id": "PF17496", "short_name": "DUF5431", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vaccinia virus (strain Copenhagen)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5432-pf17497.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17497", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5432-pf17497.yaml" } ], "pfam_ids": [ "PF17497" ], "protein_name": "Uncharacterized 8.0 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLHEFHVRRLLKFRVESCSSIHSLSLHPLYVIMSPMDIIGFNSTSDTGIRYCSYMCLIIICCVSGELFSA", "sequence_length": 70, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "809dfed3d96f14cfff164d8c4cc16c2a25823015f136c3630229b51f7b6f3556", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P20555.json", "taxon_id": "10249", "uniprot_accession": "P20555", "uniprot_release": "2026_03" } ], "pfam_id": "PF17497", "short_name": "DUF5432", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vaccinia virus (strain Copenhagen)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5433-pf17498.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17498", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5433-pf17498.yaml" } ], "pfam_ids": [ "PF17498" ], "protein_name": "Uncharacterized 8.4 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFASCFNINGTNFILALCIIFVPTIKLYIQIIMRCVYANGINKRSTPFSHNRNPKIFKVYLNERSCIIVRIW", "sequence_length": 72, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "514032c918e6965ea43ea8fb340849dd81b3db20aa262d2d3f6791bebf786d49", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P21120.json", "taxon_id": "10249", "uniprot_accession": "P21120", "uniprot_release": "2026_03" } ], "pfam_id": "PF17498", "short_name": "DUF5433", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Equine herpesvirus 1 (strain Ab4p)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5434-pf17502.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17502", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5434-pf17502.yaml" } ], "pfam_ids": [ "PF17502" ], "protein_name": "Uncharacterized gene 59 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVFGRGRAATADDYRRFLERNSRAAAKLAAATTPTHTASSRQQPEVSARPRHRSLSSRRNSVPHYDPHAGAGGDGQLALSERPSGTLGALAMAAQRRKSIGRPDTPVNAAMGSALRSSQRPRGDVRNPRGEGQTQRGGSRGEANHAQRRQSVTQSTAARQTQPHQGRPRPRRNTLRHM", "sequence_length": 179, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ba7b763b750e5f3ff19ed680983bcfed5e9d7902b55ebc0ca0c039b8cb5f5364", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P28983.json", "taxon_id": "31520", "uniprot_accession": "P28983", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Equine herpesvirus 1 (strain V592)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5434-pf17502.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17502", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5434-pf17502.yaml" } ], "pfam_ids": [ "PF17502" ], "protein_name": "Uncharacterized gene 59 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVFGRGRAATADDYRRFLERNSRAAAKLAAATTPTHTASSRQQPEVSARPRHRSLSSRRNSVPHYDPHAGAGGDGQLALSERPSGTLGALAMAAQRRKSIGRPDTPVNAAMGSALRSSQRPRGDVRNPRGEGQTQRGGSRGEANHAQRRQSVTQSTAARQTQPHQGRPRPRRNTLRHM", "sequence_length": 179, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ba7b763b750e5f3ff19ed680983bcfed5e9d7902b55ebc0ca0c039b8cb5f5364", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P84447.json", "taxon_id": "310273", "uniprot_accession": "P84447", "uniprot_release": "2026_03" } ], "pfam_id": "PF17502", "short_name": "DUF5434", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Equine herpesvirus 1 (strain Ab4p)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5435-pf17503.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17503", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5435-pf17503.yaml" } ], "pfam_ids": [ "PF17503" ], "protein_name": "Uncharacterized gene 2 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDPAWRRRIHVSNPTTINVEPRPRRESLRRQLLSQLFFKKMSQLFKKKRQTRPSTVWYGRVAFPPSAWQGPARVSPYGYESDSENEEYTRISSATSSNVLTDSPTTTQDDPTGRCTDAYAESPAVLHLDDVTRNHRGAAALPSEVYLDGFCDQHKDPSGRMGPIKRRLYSKTFCRKFAAINIILLMLQILVLIGIVYRGFGKECM", "sequence_length": 205, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4af9289c582338fb355fcc74efda2ad8c39c4a7a435b419e21ac40692862123f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P28979.json", "taxon_id": "31520", "uniprot_accession": "P28979", "uniprot_release": "2026_03" } ], "pfam_id": "PF17503", "short_name": "DUF5435", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vaccinia virus (strain Copenhagen)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5436-pf17504.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5436-pf17504.yaml" } ], "pfam_ids": [ "PF17504" ], "protein_name": "Uncharacterized 11.2 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRCIHIKERKIHMTNIVDRNVTFILTVVHKYVRYVPHTVANDAHNLVHLAHLIHFIIYFFIIRDVRKKKKKKKKNRTIYFFSNVYARHIK", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b5b8fe5b77845043073ed10c83a5ef2a2bc224ef8a4b8a3e79cbe1fc3bed1b5c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P20547.json", "taxon_id": "10249", "uniprot_accession": "P20547", "uniprot_release": "2026_03" } ], "pfam_id": "PF17504", "short_name": "DUF5436", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5437-pf17505.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17505", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5437-pf17505.yaml" } ], "pfam_ids": [ "PF17505" ], "protein_name": "Uncharacterized 7.6 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLLLVLITLIIAALANNALRDPLAPPVRRFGHLAGAPKLRGHDASRNVAAQPVYNAAEERLQQCRAHLD", "sequence_length": 70, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d61e587969d25403059b9d78097a88e083c96c69a0a6cc9918bb6a12f381809d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10360.json", "taxon_id": "262177", "uniprot_accession": "O10360", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5437-pf17505.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17505", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5437-pf17505.yaml" } ], "pfam_ids": [ "PF17505" ], "protein_name": "Uncharacterized 7.2 kDa protein in HE65-PK2 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLIILLFVVAAFVTLAMGKKSLKDPLTITTAHFDHPEGLKHKIRRPYNKHEDRLIQCKIYL", "sequence_length": 62, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6f784d4c4e3dd13ee0d9ab4760ed18567fe633299e4b8f40b91a53e715444cfe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41675.json", "taxon_id": "46015", "uniprot_accession": "P41675", "uniprot_release": "2026_03" } ], "pfam_id": "PF17505", "short_name": "DUF5437", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vaccinia virus (strain Copenhagen)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5438-pf17506.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17506", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5438-pf17506.yaml" } ], "pfam_ids": [ "PF17506" ], "protein_name": "Uncharacterized 8.1 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNVSIPHSFTMTLKEINRSIIYSTTNSVISALLMYNLLTIISTTYLSVSFRRVMFGFNSPKHTNSKLILTD", "sequence_length": 71, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "83cd9a8a41b16c345cb1decef2d900da8ce66e1a59ed2789cb58fe93361524f5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P20567.json", "taxon_id": "10249", "uniprot_accession": "P20567", "uniprot_release": "2026_03" } ], "pfam_id": "PF17506", "short_name": "DUF5438", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vaccinia virus (strain Copenhagen)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5439-pf17507.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17507", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5439-pf17507.yaml" } ], "pfam_ids": [ "PF17507" ], "protein_name": "Uncharacterized 9.3 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKYDVIVYWYIWKEIYQSRNKRLISHRNTKVHNLIIEEHFVTIVINIHSVICINEVLFKHDEMFICWHSSEIDVW", "sequence_length": 75, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0857e7a7f72cc400fe732e582752f5a0cfbee9786d138ab52fe245167a761000", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P20516.json", "taxon_id": "10249", "uniprot_accession": "P20516", "uniprot_release": "2026_03" } ], "pfam_id": "PF17507", "short_name": "DUF5439", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5440-pf17509.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17509", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5440-pf17509.yaml" } ], "pfam_ids": [ "PF17509" ], "protein_name": "Protein TraA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIEAYPHDFRGSLAVVSATGVAGCRTWTLRSVETGKHYELAPASIEGWPLPAKREDSRPNSIIVNYDGNDVIALELATGELYRTRAPATTLRLRR", "sequence_length": 96, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c9e60b3db1449de780e2c78be0bc38267d090565e455f997c79b0901dbe4d72b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P27187.json", "taxon_id": "562", "uniprot_accession": "P27187", "uniprot_release": "2026_03" } ], "pfam_id": "PF17509", "short_name": "DUF5440", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human adenovirus B serotype 7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5441-pf17513.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17513", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5441-pf17513.yaml" } ], "pfam_ids": [ "PF17513" ], "protein_name": "Uncharacterized 20.6 kDa early protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGVQRCQGPILPWSQRPSQGCFRHGEGVRAWLGACEGALQTHPAGREPLPIGALHVGQVAVYHKFVVERLGRVAFGTELTFGSFMAGRAVDTFEGIQLGREENGFGGVCIRTAGDADGFALHKPGQIRLIRVKNKFSAMFFDAFLTFGFHEFVSTLGDKEAVRVPVDRLYGPVLERSASVLFVEESSPL", "sequence_length": 189, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d4c9dda706e5e4c55a3770b6a5b7d975b33dc36fce7689471cdf70c70e41b15f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P05665.json", "taxon_id": "10519", "uniprot_accession": "P05665", "uniprot_release": "2026_03" } ], "pfam_id": "PF17513", "short_name": "DUF5441", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chironomus thummi thummi", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5442-pf17514.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17514", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5442-pf17514.yaml" } ], "pfam_ids": [ "PF17514" ], "protein_name": "Balbiani ring A 67 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFIIRTILIALFLIAIINESQCRRDPRKFRLSRVFEKLIEKNSRHHENERENEIGRAFDMDCVKNFFKLPQNGKMILKETEEMVFMVASGMKCSTEYKIFGAMFRDFVNEGLKEHLTCLKWQLKQYEPSAKLIENFEITEAELKVCQEKFPIYNEMKGFQKDLEDLLGPLNTYTCGAVSEDGAKDFLIFVSKGAIVEYGDISEELKKTEKEKLKDYFKDISIKTAECHIKRFENEPQAYQVNDTLNYYYKKDLVPTDPDQEDPNGYYQRLIKVEEAIDKDCVKQKLTLPENGDKAFVEPEATILIASAKTKCIKIDQLEFSNLFIDFALEDGQRHDRYYSCARYKLHQLDPNSQLAVITSSDKSHEKHCRHIEIRLHPFSIPINGYAESVGKLNEATCGVLTDDIVNVVTLKTMLLYDVKDKELKINETKELYGLVTDKLQKLARLILERVR", "sequence_length": 453, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "365f45eded172d640dc081302ae27b795f5f2c7462772427f1d2b1c7ed5fb9db", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P24243.json", "taxon_id": "7155", "uniprot_accession": "P24243", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chironomus thummi thummi", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5442-pf17514.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17514", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5442-pf17514.yaml" } ], "pfam_ids": [ "PF17514" ], "protein_name": "Balbiani ring A 28 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKSIIKHILFVVLLISIIHDSQCRWFILKNRLSHFINRISELKEQDSREAKLYKSFDIDCGKNFLKVQQNSKMLVNEEEELVFKVASSLKCSSEDAAFKFYFDEIIRPKLKKGLSCFELHLQQQEPDSKLIKNAIITKAEVEKCKKQSPIDDLKEVENGLEDVIGPLDVFSCGAVTSVDDYVLFVTKSVLIKFGESSEAVKKVEMEKLKEYLKDIAFTTAECIFKRFETDPKGTWFIFVGYVARF", "sequence_length": 245, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5bb5ad17fbd3263e5251582162cb7955cae2ceeebc82b122c570af00be2eb93e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P28027.json", "taxon_id": "7155", "uniprot_accession": "P28027", "uniprot_release": "2026_03" } ], "pfam_id": "PF17514", "short_name": "DUF5442", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5443-pf17518.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17518", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5443-pf17518.yaml" } ], "pfam_ids": [ "PF17518" ], "protein_name": "Uncharacterized protein MG285", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAILNVQRIQNNQVTEYTMSPVRNFANTKDVYFDAQLTNIESKIDSSRAQIHLTIALKYNTNLPDNIFQAHFSLGNWQSDKIQLQKAPDKKHDSLNSIKYFYAFLDVPRSALAKKEINRFSNVVARVLRISFRLQDQSEKGNWSDYHLFDTVASELYATVIKETINFGNMIKINALDGSKQLTSSQGSFKYSWTMYDYRNLEQLDEVRNLINISFDKPVQIVNVDVKIHYVPTKGRLQEIKQQGEFENNLDVNEKLKLNLIGNWNFDKHNKKLISDISGTGIFLPQGGYGSYEIMIGATVGNDFYTIIANNQFKYETPLDDLEQNDFFEVNYLPVYSTYNFSDLTQ", "sequence_length": 347, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9ab9b24dbd610bab7aac3a00e01ed3a2af56057c51a41eb1998bc1cad2887c0b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47527.json", "taxon_id": "243273", "uniprot_accession": "P47527", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5443-pf17518.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17518", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5443-pf17518.yaml" } ], "pfam_ids": [ "PF17518" ], "protein_name": "Uncharacterized protein MG285 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTILTVRQIQNNYYTEYYMGPVRNFADKKEVYFDAKVNNIESKVNKDKALLHITLALKYDSNFPSNMFQAQFKLGNWSSEKIPLQKAPDKKSDLENKIHYFYATLEVPRTALIKREINRISEYIREELTIAFRLNDSSDRYHWSNYNLFDTVAADMYQTVIKETVTFGNMIRLNQLEGEKEGNIQQSELKYGWTMLDYRNMGPLEEVNNLINIKFNQPVKVVSVGVTVSYTAPDGKRQELKDQAEYQHTLNPNEEFKLNFPRRLSFNRVTKKLDFDPNGSAVFLPQGGFGSYEIKLEANVGNQFYTIVATNSFEYAHPFDDPKTNDFFLVQYAPVYSLFNFSDLIQ", "sequence_length": 346, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "df0cc2b0db1729ab4150fae9e38dd814a41f4fd9b5ee98e814f94a8b7e21ddf0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75380.json", "taxon_id": "272634", "uniprot_accession": "P75380", "uniprot_release": "2026_03" } ], "pfam_id": "PF17518", "short_name": "DUF5443", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella phage P22", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5444-pf17519.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17519", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5444-pf17519.yaml" } ], "pfam_ids": [ "PF17519" ], "protein_name": "Protein kil", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIVPVNGTILVQQGNREFNKLYEASFPDTKEGNSAAYAWASSIAMGWEDCQDEDWNRNHAA", "sequence_length": 62, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d42774667e420176d3f4451d2b2d55fafe54a674f627e8bad58b6cfa42b5d22", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P14111.json", "taxon_id": "10754", "uniprot_accession": "P14111", "uniprot_release": "2026_03" } ], "pfam_id": "PF17519", "short_name": "DUF5444", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5445-pf17520.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17520", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5445-pf17520.yaml" } ], "pfam_ids": [ "PF17520" ], "protein_name": "Uncharacterized protein YncH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVCFLIYITLLFIQRVYFISSEKKLTIHIVQMFQLLSQAFYNLKMFLMMDMLGVGDAININTNKNIRQVC", "sequence_length": 70, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f81235cfc6ed217028f3c7c9d9a8ff6243cb86596b07dcfeffb00712d15070f3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76118.json", "taxon_id": "83333", "uniprot_accession": "P76118", "uniprot_release": "2026_03" } ], "pfam_id": "PF17520", "short_name": "DUF5445", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5446-pf17522.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17522", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5446-pf17522.yaml" } ], "pfam_ids": [ "PF17522" ], "protein_name": "Uncharacterized protein YppD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGYVCKTDILRMLSDIEDELTRAEQSLNHSVNALEAEMRETENDRLSVLEEEIIDLHICINELYQSPEHRYAFEKVYRIG", "sequence_length": 81, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5f35e95d5858c3037fe0c836bb224efe35dab7ff45d329a79b9c46d03fc30c8c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P50832.json", "taxon_id": "224308", "uniprot_accession": "P50832", "uniprot_release": "2026_03" } ], "pfam_id": "PF17522", "short_name": "DUF5446", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas phage Pf1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5447-pf17525.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17525", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5447-pf17525.yaml" } ], "pfam_ids": [ "PF17525" ], "protein_name": "10.9 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAASPYYLRQTHAPDCACSVCWSVRQAIPLHNPSPCPDCRPPGLPYLEGGRWLCRPRSFCAKHDPSRRPPKYWHVVYDSGKPTPFVPVREDFQLEG", "sequence_length": 96, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a2a24eac0dbbe02e1df9dc1878be5d4da77df71ee868a7f20bce53759dba1940", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P25134.json", "taxon_id": "2011081", "uniprot_accession": "P25134", "uniprot_release": "2026_03" } ], "pfam_id": "PF17525", "short_name": "DUF5447", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella phage P22", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5448-pf17526.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17526", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5448-pf17526.yaml" } ], "pfam_ids": [ "PF17526" ], "protein_name": "Eaf protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNIDKLNDHELVDLKRDIERELKRRAEGPKITTYYVVSCITDAQHFTDMDCALRCLKRVTEDLMEWVAESPENRDYVNRCTGIVGAKLQVEEMNLDHFNMCVAEKYFDDICYPPETAQ", "sequence_length": 119, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ce97a24691a953bbcd5dd0e76fc0c7fb0cccb79b780629c40521b4a492e14b30", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q03548.json", "taxon_id": "10754", "uniprot_accession": "Q03548", "uniprot_release": "2026_03" } ], "pfam_id": "PF17526", "short_name": "DUF5448", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lactobacillus sp. (strain 30a)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hdcb-pf17528.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17528", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hdcb-pf17528.yaml" } ], "pfam_ids": [ "PF17528" ], "protein_name": "Protein HdcB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNSNYQVSLERIKKVVPEELLTNALLAAIDNSGERMSQIIVDKKDNGNDYYLTIHRFFVYSNEEFTAFDKEDVADVEFVNGTPDGEVIITLKDGKVLHPSHICYGRAFDFIQDVKPKVITMAGYDSTIRGEFPQLLDPDHAEEIDRLRRWMQDGNISHYEYDDANPAYPKAGK", "sequence_length": 174, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b0cd16981f0a279d2d388d76d17bf8ea669d1507516661f5428bb0ff06131e5f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P09111.json", "taxon_id": "1593", "uniprot_accession": "P09111", "uniprot_release": "2026_03" } ], "pfam_id": "PF17528", "short_name": "HdcB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Giardia intestinalis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5450-pf17529.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17529", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5450-pf17529.yaml" } ], "pfam_ids": [ "PF17529" ], "protein_name": "Protein C4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFNPRHPGGEFFGRKHHRRHAPDGRSSSSSSSSSECELGYDERRCCRQEPDAHCCDREHRKFWKHPPEFPHFGKCKGRHALPFPRMEHWPGPKHCPFLSEKDMKDLPVTVHHGCMPIVAHGVVMFHIVSETKPSITISNTGAIKVEANGIQLLSASLKEKYPVDKVVASYANKIATIRIPCDAAFSESPVDIPITIQK", "sequence_length": 198, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a4a2bee9159b0d0e22c9d5f0e92819f3c127219fb94ca5823601b90c9f3379c3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q01832.json", "taxon_id": "5741", "uniprot_accession": "Q01832", "uniprot_release": "2026_03" } ], "pfam_id": "PF17529", "short_name": "DUF5450", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Epstein-Barr virus (strain B95-8)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5451-pf17532.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17532", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5451-pf17532.yaml" } ], "pfam_ids": [ "PF17532" ], "protein_name": "Uncharacterized protein BLLF2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCPPVRQHPAQAPPAKRQALETVPHPQNRGRLMSPKARPPKMQRRPRPPVAKRRRFPRSPQQVERPILPPVESTPQDMEPGQVQSPPQITAVIQLRQDRDTMRPPIYLPALLANCGPAGLLRAHRLPQPKPPCQSRQRPSPDSQTSPC", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4584c2607114e01aec2623bdf1079ea1ed1758b47b285acdb24e295ddcae3cb9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P03199.json", "taxon_id": "10377", "uniprot_accession": "P03199", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Epstein-Barr virus (strain AG876)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5451-pf17532.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17532", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5451-pf17532.yaml" } ], "pfam_ids": [ "PF17532" ], "protein_name": "Uncharacterized protein BLLF2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCPPVRQRPAQAPPAKRQALETVPHPQNRGRLMSPKARPPKMQRRPRPPVAKRRRFPRSPQQVERPILPPVESTPQDMEPGQVQSPPQITAVIQLRQERDTMRPPIYLPALLANCGPAGLLRAHRLPQPKPPCLSRQRPSPDSQTSPC", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "138e9c2eb89918032af683bdb56c409757a03845c419d970d54c1c5f8afa47bd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P68345.json", "taxon_id": "82830", "uniprot_accession": "P68345", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human herpesvirus 4 (strain GD1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5451-pf17532.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17532", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5451-pf17532.yaml" } ], "pfam_ids": [ "PF17532" ], "protein_name": "Uncharacterized protein BLLF2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCPPVRQRPAQAPPAKRQALETVPHPQNRGRLMSPKARPPKMQRRPRPPVAKRRRFPRSPQQVERPILPPVESTPQDMEPGQVQSPPQITAVIQLRQERDTMRPPIYLPALLANCGPAGLLRAHRLPQPKPPCQSRQRPSPDSQTSPC", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0066ecf4a163a670de2f8b325fecd4016af39e1d0524c5f566b64673e72dc90b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3KST3.json", "taxon_id": "3470597", "uniprot_accession": "Q3KST3", "uniprot_release": "2026_03" } ], "pfam_id": "PF17532", "short_name": "DUF5451", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5452-pf17533.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17533", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5452-pf17533.yaml" } ], "pfam_ids": [ "PF17533" ], "protein_name": "Uncharacterized protein MG286", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIFSISKRKLICGFLLVILTIGGVLGGVYLVTKNNKDNYQNESNFNNQEQISKIPNFKAIGPETQRILRERNYPLDDSGYYVYKYGEINRYLRNESELDELINYRVMVPSLKLHHKRVNFDKAFLESKLRKWIIKAIKQHNYFQHFENEPNLRVQYNMNIPAQKIDVNAVWSYKKDNDAATGKPIRYWDQFELKLK", "sequence_length": 196, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6bcd7aa6bf8f051db931532b86f82afdc3c1725697970a50e92a883338aa32ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47528.json", "taxon_id": "243273", "uniprot_accession": "P47528", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5452-pf17533.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17533", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5452-pf17533.yaml" } ], "pfam_ids": [ "PF17533" ], "protein_name": "Uncharacterized protein MG286 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIFSISKRKLICGFSLVALTIAGIVGGVYLVTKNNQQTTPQTNHFNVADPVNKVPNWRKLGPETQRELRDLLYPLDDTGYFIYKYGAISRYLQSQKELDELVDYRTVLPSTQKHFKYDSFNQSVLESKLRKWLMKAIKQHPYFQHFEFDPVLKAQYNINIPAQKITVNAVWFYKKDNDLTTGKPIRYWDQFEIKLKQ", "sequence_length": 197, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "10b005062844b90401d1225867c4e6a5347f8cace3fdc0fb87eab05ff690d8ba", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75379.json", "taxon_id": "272634", "uniprot_accession": "P75379", "uniprot_release": "2026_03" } ], "pfam_id": "PF17533", "short_name": "DUF5452", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5453-pf17534.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17534", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5453-pf17534.yaml" } ], "pfam_ids": [ "PF17534" ], "protein_name": "Uncharacterized protein MG028", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRNWRQHYNVFLANLVLVFGFALNILVAKQSLNNTTPQFRFLFVTPFLGVVIGAVLYFFDVKWFLIDYPYKKFHFQKKWAIVYLSGVIVFFLNVLIGVVLLVVMVNYITNQILEREYERLFTNSLPYLWSTTGTSIVLSLISIGMSKTAHFFIDIEILKAKKGEPTDPNKTDNRAVVINLDENKKNEKEQSPPSAEMTSL", "sequence_length": 201, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "56bc22d14c70e5dfdd5730a60b0c2559efb11fcf48e768ad5382e380d0ed139d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P47274.json", "taxon_id": "243273", "uniprot_accession": "P47274", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5453-pf17534.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17534", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5453-pf17534.yaml" } ], "pfam_ids": [ "PF17534" ], "protein_name": "Uncharacterized protein MG028 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRNWREHYNVFVANLALVLGFMLNIVVARYTLTGATPQARFLFLTPFLGIVAASIFYFFDVKWFLADYPYKKFHFQKKWTWTYLSGVFVFFANILVNVILLALLVNQMTNQILSEKYTGLLDNAYPLLWSAVGVSIFLSLISIGLSKTAHFKIDVEMLKAKKGEPTAADKTDSRPVVVDLDQTKSKKDGDNPPQASGDMTSL", "sequence_length": 203, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c825b5810f0ef6adbef9bf1cb7a10f98a5155314a9c4d19a86d72b38e6bb6c98", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75083.json", "taxon_id": "272634", "uniprot_accession": "P75083", "uniprot_release": "2026_03" } ], "pfam_id": "PF17534", "short_name": "DUF5453", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5454-pf17535.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17535", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5454-pf17535.yaml" } ], "pfam_ids": [ "PF17535" ], "protein_name": "Uncharacterized protein MG210.1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKTKNKSDWQIFLEDYRFYFETDFDWVTYLNNCLNSYPDFDIIKFIKKYGPECEKSFLSWQSKAKSDVYSELTNKIKKQQFSEQLIYQLVQLDALRTNYLIGSLFSDNKTQRKLLKRSWKNAKKEGYTKQEWLMILVGLPFEKGAYHKQLYDHSRQEILDLTEVIKKLYLKTETNNDKLEFAATTSKTTAQLTKTMPLNSSDLDKDLMEFSGEKWGDN", "sequence_length": 219, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f5106fd4a4ae4bffb87ba57a3cb825a09839526d3597cea278db0fd7a21ff9ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P56723.json", "taxon_id": "243273", "uniprot_accession": "P56723", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5454-pf17535.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17535", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5454-pf17535.yaml" } ], "pfam_ids": [ "PF17535" ], "protein_name": "Protein MPN_295", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNTKNKSDWQLFLEDYRFYHEKEFDWITYLNHCLNSYPDFDILKFIRKYGPECEKSFLSLQSKTKADVYGVFTKQIKAGSVNEVLAQKLVQLDALRTNYLIGALYSTNKTQKKLFKQSWKNAKKQGYTKQEWLMTLVGLPFEKGEYHKQLYAHSRQEILDLVEAVKKLYLRPEKDDKLEFADSSKVSESKSIKVTNAVTLPSDDLDKELFEFSGEGGDE", "sequence_length": 220, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e1fc45a8880f3ca4249b49973b452ef7b071a47f61ea132aa61154c55865b77d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P75482.json", "taxon_id": "272634", "uniprot_accession": "P75482", "uniprot_release": "2026_03" } ], "pfam_id": "PF17535", "short_name": "DUF5454", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage If1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5455-pf17537.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17537", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5455-pf17537.yaml" } ], "pfam_ids": [ "PF17537" ], "protein_name": "Head virion protein G6P", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPVFLGLPVLARFIGWLAGALIAYVAKFFTLGIARIALAISLFLGLIIGLNGLLVSYLSDLTSVLPPEIASAVSYVVPANAAPCLYAIFSLKAAVFIFDVKDRIIGYLDWNKS", "sequence_length": 113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0a841c8524a85e30ad6485eb40a4fd1b3ffc82c4b2de483be4e47e153b0a7d4e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O80298.json", "taxon_id": "10868", "uniprot_accession": "O80298", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage f1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5455-pf17537.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17537", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5455-pf17537.yaml" } ], "pfam_ids": [ "PF17537" ], "protein_name": "Head virion protein G6P", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPVLLGIPLLLRFLGFLLVTLFGYLLTFLKKGFGKIAIAISLFLALIIGLNSILVGYLSDISAQLPSDFVQGVQLILPSNALPCFYVILSVKAAIFIFDVKQKIVSYLDWDK", "sequence_length": 112, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4e553d3e72404d4aca9defed4cc9b7d3f83a84629ff01fe68bd0eb2952171c15", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P69531.json", "taxon_id": "10863", "uniprot_accession": "P69531", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage M13", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5455-pf17537.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17537", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5455-pf17537.yaml" } ], "pfam_ids": [ "PF17537" ], "protein_name": "Head virion protein G6P", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPVLLGIPLLLRFLGFLLVTLFGYLLTFLKKGFGKIAIAISLFLALIIGLNSILVGYLSDISAQLPSDFVQGVQLILPSNALPCFYVILSVKAAIFIFDVKQKIVSYLDWDK", "sequence_length": 112, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4e553d3e72404d4aca9defed4cc9b7d3f83a84629ff01fe68bd0eb2952171c15", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P69532.json", "taxon_id": "1977402", "uniprot_accession": "P69532", "uniprot_release": "2026_03" } ], "pfam_id": "PF17537", "short_name": "DUF5455", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17540", "short_name": "DUF5457", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17541", "short_name": "TssC", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5460-pf17544.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17544", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5460-pf17544.yaml" } ], "pfam_ids": [ "PF17544" ], "protein_name": "Uncharacterized protein RP760", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHNADCNWKNIMQSFTESPNDFSILHQECSSGLNIPINNIFTDTENNTHLLLDQTVTHNQNGTANILGKIYKVTNGYMFSQGDITSTNGANFLGLNQCTEEAAISVLQNYHSYKETLIPRASFINTLAETLNHLGLYLDNISPMEIGKYILDQFGKTYDEPTTEKSNNDTNCHEYSNSYYYVVALGTLALGSILGYTAKYVWDNYNGKNIKNENIELVRENKQLKFSTLLYENFKNNAFILDEIIKINNLNDIIKLAKSMQEFKSSISSLTNLNNEIIKLNSPSAIALNLASVSKILHEICDNLKGNDSFTTINNFAKLITMIRTENPDSEEYKASIKEILEIFSSHYEEIEELNYATPLLAIEAYSPLEIIE", "sequence_length": 373, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b155589db9e0b5c81dcb70c37cb71189d64e6a196375c9468525667c9236ab6e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZCI0.json", "taxon_id": "272947", "uniprot_accession": "Q9ZCI0", "uniprot_release": "2026_03" } ], "pfam_id": "PF17544", "short_name": "DUF5460", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sulfolobus spindle-shape virus 1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5461-pf17545.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17545", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5461-pf17545.yaml" } ], "pfam_ids": [ "PF17545" ], "protein_name": "Uncharacterized protein C-102b", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSVTEIITYGREAIERIICKYFKDSKIEKILFLPSEEDVKAKYIIGRVGFIRISNTWSGIVVVDGVQIPFVAEVHLNGKIDIYLYPQKDFYLAHLVGELNG", "sequence_length": 102, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "866e9763a7de49c6e72c960cf65506236306267491e9cd80235663ede3427d08", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P20207.json", "taxon_id": "244589", "uniprot_accession": "P20207", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sulfolobus islandicus rod-shaped virus 1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5461-pf17545.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17545", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5461-pf17545.yaml" } ], "pfam_ids": [ "PF17545" ], "protein_name": "Uncharacterized protein 91", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDYKNGIKKLLQKCFSDKSIDVIFMSCNNLSPHKDYMIIDPETKYYIGYILTNGIKIPFIAEVWHNNTTRIYLDPRKNFYLALFIGDLNV", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "674ee9bb00eee22fe5117e665ab275e1b8ba02826d95983afa4d873353d9942e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8QL39.json", "taxon_id": "157898", "uniprot_accession": "Q8QL39", "uniprot_release": "2026_03" } ], "pfam_id": "PF17545", "short_name": "DUF5461", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", 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"cd24b1ed13a64308551c70b285067a24a3cd785cea36163f767d494f87f1bc60", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P25447.json", "taxon_id": "562", "uniprot_accession": "P25447", "uniprot_release": "2026_03" } ], "pfam_id": "PF17547", "short_name": "DUF5462", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5463-pf17551.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17551", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5463-pf17551.yaml" } ], "pfam_ids": [ "PF17551" ], "protein_name": "Yop proteins translocation protein A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQITTKHITVLFRRWMAIICCLIIKIAYLAY", "sequence_length": 32, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b1fe9d18483983175b3dcd5b5c37068ed5f7589df89f68ee61bd482c5e88c684", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A1JU92.json", "taxon_id": "393305", "uniprot_accession": "A1JU92", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Yersinia pestis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": 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"2026_03" } ], "pfam_id": "PF17551", "short_name": "DUF5463", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage T7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5464-pf17552.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17552", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5464-pf17552.yaml" } ], "pfam_ids": [ "PF17552" ], "protein_name": "Protein 1.4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"data/traits/sequence/family/pfam/duf5471-pf17565.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17565", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5471-pf17565.yaml" } ], "pfam_ids": [ "PF17565" ], "protein_name": "Gene 4.3 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFKFINTLGKLVVKLYFIEAKKLDKKAKADSQRAIELAKQSREKSDAAVSGVHKSAAIAAKAQSMSKFFE", "sequence_length": 70, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a1937c05e0ba16bbb0418ec5d3c846c65c5834d291893b8da165565a1d51c2bc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P20317.json", "taxon_id": "10759", "uniprot_accession": "P20317", "uniprot_release": "2026_03" } ], "pfam_id": "PF17565", "short_name": "DUF5471", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human papillomavirus type 6b", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5472-pf17566.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17566", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5472-pf17566.yaml" } ], "pfam_ids": [ "PF17566" ], "protein_name": "Probable protein E5B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMLTCQFNDGDTWLGLWLLCAFIVGMLGLLLMHYRAVQGDKHTKCKKCNKHNCNDDYVTMHYTTDGDYIYMN", "sequence_length": 72, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "84cbfa6d6340a6ae23cee52567fccf1d31e6b616dabbddd1e20eb13e6843db5b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P06461.json", "taxon_id": "10600", "uniprot_accession": "P06461", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human papillomavirus type 6c", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5472-pf17566.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17566", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5472-pf17566.yaml" } ], "pfam_ids": [ "PF17566" ], "protein_name": "Probable protein E5B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVMLTCHLNDGDTWLFLWLFTAFVVAVLGLLLLHYRAVHGTEKTKCAKCKSNRNTTVDYVYMSHGDNGDYVYMN", "sequence_length": 74, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5cf57e28cbb448742ac59c7ab6eaa05c2a920b7eef5a2bbc7dcddd1c9428711d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P69900.json", "taxon_id": "10601", "uniprot_accession": "P69900", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human papillomavirus 11", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5472-pf17566.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17566", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5472-pf17566.yaml" } ], "pfam_ids": [ "PF17566" ], "protein_name": "Probable protein E5B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVMLTCHLNDGDTWLFLWLFTAFVVAVLGLLLLHYRAVHGTEKTKCAKCKSNRNTTVDYVYMSHGDNGDYVYMN", "sequence_length": 74, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5cf57e28cbb448742ac59c7ab6eaa05c2a920b7eef5a2bbc7dcddd1c9428711d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P69901.json", "taxon_id": "10580", "uniprot_accession": "P69901", "uniprot_release": "2026_03" } ], "pfam_id": "PF17566", "short_name": "DUF5472", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human adenovirus C serotype 2", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5473-pf17567.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17567", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5473-pf17567.yaml" } ], "pfam_ids": [ "PF17567" ], "protein_name": "Uncharacterized 11.6 kDa early protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERRVWFLSRSARSLAAMFSCTYSRATHRHSGKTVVRSSGTRCTRQPRLCRVTRSTLVATSPRRRSLVQQRRPPLREQNGGSGSSCVSSGGSASTVKTPGSRRASK", "sequence_length": 106, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "464810219687a3d78e9a18dd4f4c04e0b87396d075ae367c01515fe49723d3c7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P03287.json", "taxon_id": "10515", "uniprot_accession": "P03287", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human adenovirus B serotype 7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5473-pf17567.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17567", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5473-pf17567.yaml" } ], "pfam_ids": [ "PF17567" ], "protein_name": "Uncharacterized 11.5 kDa early protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERMVWFFSLSARSLAAMLSWTYSRATHFHSGKMVVSSSGTILTRHPLLCRVIRSTVVATSPRRGSLVQQSRPPFREQKGGRGSSMNSSGGSASMVNIPGSKSLSK", "sequence_length": 106, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3e76f956b9e3daf494bf239b144980c8c71f94c0100678480698fe634c79c445", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P03288.json", "taxon_id": "10519", "uniprot_accession": "P03288", "uniprot_release": "2026_03" } ], "pfam_id": "PF17567", "short_name": "DUF5473", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5474-pf17568.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17568", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5474-pf17568.yaml" } ], "pfam_ids": [ "PF17568" ], "protein_name": "Uncharacterized killer plasmid pGKl-2 protein 8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLYLNSTLCSIISIMYKITNVSFVEYYSNNVSKDVIYSYLMNSTCSNKGTIKLNLESGKRLKQEGPYILPPIRWLDSFEKNAEFTILCEVDDIK", "sequence_length": 95, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9e2e267b716cfb912f2d6f6577898947ed2709955451bf256fcd51820f76d0cc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P05474.json", "taxon_id": "284590", "uniprot_accession": "P05474", "uniprot_release": "2026_03" } ], "pfam_id": "PF17568", "short_name": "DUF5474", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5475-pf17569.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17569", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5475-pf17569.yaml" } ], "pfam_ids": [ "PF17569" ], "protein_name": "Uncharacterized 9.3 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSMAQVVEACKLHAVFAKLGYLFRARVCLDIALANLKQLRQRVAIPQVANMLAKKEAQCCLLREKLNTQIDNRSLIKLYKIA", "sequence_length": 82, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "df6c8e4a20abc4142d5b9838f5e36693e34109d96f162b5cbd98226799c394bf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10359.json", "taxon_id": "262177", "uniprot_accession": "O10359", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5475-pf17569.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17569", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5475-pf17569.yaml" } ], "pfam_ids": [ "PF17569" ], "protein_name": "Uncharacterized 9.5 kDa protein in HE65-PK2 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSILKVVEACNLAHTFLKLGYLFRAKTCLDIALDNLELLRRKTNIKEVAVMLNKKTTECLQLKRKIDKKIAQRVLIKIYTIK", "sequence_length": 82, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3b4f4128e54a1bed6982c203f469cbbe1e872ac2cc373ebf259ffc2b29e68037", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41673.json", "taxon_id": "46015", "uniprot_accession": "P41673", "uniprot_release": "2026_03" } ], "pfam_id": "PF17569", "short_name": "DUF5475", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17570", "short_name": "T7-like_gp67", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage T7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5477-pf17571.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17571", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5477-pf17571.yaml" } ], "pfam_ids": [ "PF17571" ], "protein_name": "Protein 19.2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTQPLSGLLCTQGHVKRTSITHSVLLLCYALSTMRTLRHLLGLQQTQCALTVMTCASVSWNTVRLALRYSSCLTLTLVMPRSTR", "sequence_length": 85, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7e0c6ce8e4e294a6693562c1c5846fb5f19f408b7d4a09626379727a9c3e4c8e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P03789.json", "taxon_id": "10760", "uniprot_accession": "P03789", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5477-pf17571.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17571", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5477-pf17571.yaml" } ], "pfam_ids": [ "PF17571" ], "protein_name": "Gene 19.2 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTPQSSGLRSIRVAVRKTCTMVNVWPLCSVRSSTMGSRCSKANQLTPCDSTWKTYGNVSWNTVRLASLYSSCLTRTLVMPRSTPYASVTLSCAVLTSRKPQCTTSGFRTVRIAMRSCLTWALRVMTFIAIIRAARTLDSTSNASS", "sequence_length": 146, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a845bff6c212379a0d6cbf9416c7a59ee74a0cc6e6e1144c6e2b28bfa61f1004", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P10303.json", "taxon_id": "10759", "uniprot_accession": "P10303", "uniprot_release": "2026_03" } ], "pfam_id": "PF17571", "short_name": "DUF5477", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Orgyia pseudotsugata multicapsid polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5478-pf17572.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5478-pf17572.yaml" } ], "pfam_ids": [ "PF17572" ], "protein_name": "Uncharacterized 29.3 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVFLFTLLNYIIIILLTLWLLTSLKQNIETKPPLPSPTPTPTPSPTPTPTPSPTPTPTPTPTPTPTPTPSPTPTPALSPTPTPSPTLSPTPSPTPTPSPTPSPTPSPTPTPSPTPSPTPTPSPTPSPTPTPSPTPTPSPTPSPTPSPTPTPSPTPSPTPTPSPTPSPTPTPSPTPSPTPPPSPTPPPSPSPLGDPMYFPSSVGTTDQLRDYIRPLCNGWPRPRETYAVPWDCQRVMHCSYFSLPLHEVTCNDDSAYSFTADGCVPHYQSDCPFYPLNTL", "sequence_length": 279, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1f7c74f1b5d60fb53ebb57d185c99899f9e5d2865246f4fad4b6a2b22ee069a4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O10341.json", "taxon_id": "262177", "uniprot_accession": "O10341", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5478-pf17572.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17572", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5478-pf17572.yaml" } ], "pfam_ids": [ "PF17572" ], "protein_name": "Uncharacterized 24.1 kDa protein in LEF4-P33 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWYIIVIIIIIIILNLFIIILLTLKILDDIQELYPNPPIVPPPTSPPIVPLPTPPPTPTPSPPSPTPPPTPIPPTPTPTPPPTPIPPTPTPTPPPSPIPPTPTPSPPPSPIPPTPTPSPPPSPIPPTPTPSPPPSPSPLGEPMYYPSNIDTNEALINFLRPLCATDRTRATYAVPWNCNGIFHCNYFSIPFYILSCHNNAYSFVNDGCIDFNSSDCPLYPLNVL", "sequence_length": 224, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "329dc407b4ebe368ca95c1067d65362aa68094beea744c77d6d5bdacb047987a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41479.json", "taxon_id": "46015", "uniprot_accession": "P41479", "uniprot_release": "2026_03" } ], "pfam_id": "PF17572", "short_name": "DUF5478", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cottontail rabbit papillomavirus (strain Kansas)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5479-pf17575.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17575", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5479-pf17575.yaml" } ], "pfam_ids": [ "PF17575" ], "protein_name": "Probable protein E5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFSDVYACNPFPSAAFVTQRFFVPINLAHTQKVSWLHGHENAGLHHKTFIQHAKLLAIAQLTYRINLKTKQLQIKFCSMAALVFSLEDLESVVPEVLGVD", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5403a312d319b18f98b63db6b28e1ce6880841b68eb3d607e11960aeec9533a0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P03125.json", "taxon_id": "31553", "uniprot_accession": "P03125", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cottontail rabbit papillomavirus (strain Washington B)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5479-pf17575.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17575", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5479-pf17575.yaml" } ], "pfam_ids": [ "PF17575" ], "protein_name": "Probable protein E5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFSDVYACNPFPSAAFVTQRFFCTNKSCYAKQVSWLHGHENAGLHHKIFIQHAKLLAIAQLTYRINLKTKQLQIKFCSMAALVFSLEDLESVVPEVLGVD", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b6756fe8ed721678078950851c46aeed4edba780e2ecb7f247ae66a2ba898f4e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P29069.json", "taxon_id": "31554", "uniprot_accession": "P29069", "uniprot_release": "2026_03" } ], "pfam_id": "PF17575", "short_name": "DUF5479", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage T7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5480-pf17576.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17576", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5480-pf17576.yaml" } ], "pfam_ids": [ "PF17576" ], "protein_name": "Protein 4.2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKVAPFLLLTYVVLAHYANYLILLLPLSVISKAICLTLSSFVFSSAALLVILVSLATWNTTRKPDGLNHQVTQGKKSHTQSQQTGPTTLTSDRILDDFPDDYEKFRWRVPF", "sequence_length": 112, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3346e2e60a439081fdc80d0c89eb716d0b9650db7c6879c82111751a0a495cae", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P03783.json", "taxon_id": "10760", "uniprot_accession": "P03783", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5480-pf17576.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17576", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5480-pf17576.yaml" } ], "pfam_ids": [ "PF17576" ], "protein_name": "Gene 4.2 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKDALCLLLTYVVAVPCVSYLILSSPWSVTSKVICLTWCWFACLSVVSLATLELLDTWNTTEKPGGLNRLATLAEKEKEILAGLNKTDSQTSKGCPCGHSDCDGIMYH", "sequence_length": 109, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "682221dbbf8e7f21e947ad99f4463ab8b247e889548b669334a6003abfa0a6fc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P20316.json", "taxon_id": "10759", "uniprot_accession": "P20316", "uniprot_release": "2026_03" } ], "pfam_id": "PF17576", "short_name": "DUF5480", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5481-pf17578.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17578", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5481-pf17578.yaml" } ], "pfam_ids": [ "PF17578" ], "protein_name": "Uncharacterized 14.1 kDa protein in imm-Gp43 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIAILVIALGLAGCVAQGPVVNQSDVGKIVNCSSKFYNPNVKCYKEAPKQTVEQMQANFDEAIRPDESAQAYRNSDVITREEKIENYCAELWANWANNYQWRTGKNAPMEYVVNSYNSCVKNLT", "sequence_length": 125, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d4999564053e8e181696dd960396160a8b5d765fd703fc919a0a1192eab93793", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P18057.json", "taxon_id": "10665", "uniprot_accession": "P18057", "uniprot_release": "2026_03" } ], "pfam_id": "PF17578", "short_name": "DUF5481", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5482-pf17579.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17579", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5482-pf17579.yaml" } ], "pfam_ids": [ "PF17579" ], "protein_name": "Uncharacterized killer plasmid pGKl-2 protein 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIYDKIDTKLIKLGKTNKFSGEEEKSITSLYYEDESFEFSFKNKYVKITKIETNAYGKKFVTIKSKLYADIVEKVAKELDAVSPILSDGSFRATINDATSFSKDVGEYSFYACVSLYFPSIYKDTEKTTLQVYLKEVVVTKIIKNNLEVEFDKLSLAI", "sequence_length": 158, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1166f1366541904e5607bffce6a0054b7be09f6eaa65d6ed904d12ad5ee8fbae", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P05471.json", "taxon_id": "284590", "uniprot_accession": "P05471", "uniprot_release": "2026_03" } ], "pfam_id": "PF17579", "short_name": "DUF5482", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5483-pf17581.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17581", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5483-pf17581.yaml" } ], "pfam_ids": [ "PF17581" ], "protein_name": "Uncharacterized killer plasmid pGKl-2 protein 9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEIIEHKVEFKYKSIDEYQWTDNFKLDKQWEILRFKKNKIVQKSYMNRFPYSEPKKDYSIALYSKNKWYCLKDGVGSYISIQKEKPQIKDLTITEIKYEPYLVIYKLDFEYHIMMTILHCDERVKLLEYKRPFLKEGIILFNEMKIYVYNGLFSYKGNKIEDFELFVNEFNSQYKENYDRLFKIFGKSNHTHKSIDYKTWCKAKRENQQEWPLFTNIKIKDSIEFPNNSGIYYYYPDKYVGLARRNDDNLIPLIPKIYRKNHYENKNSLLYKYVNGLPIDEEENIPYSFIKEKYKNIKYHEDEKIIEVDYNNNVVKQKDMAEYYCYNNKLIQKIEEPVKLPKIEAQILNKRNERVEVLIDNEWKNLAGNRIDGIPTLPWNYKHIIHDYNKLGRLKKGKIMDLTHIGIVNENGTDIITWPYTDDLYIGRSIETKRLITFKYQKNVEIYDKLIDM", "sequence_length": 453, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "77a4155593c8e1e76e0f24736ec691697f7aa784d06f3595cfdd0b3e9607d93f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P05475.json", "taxon_id": "284590", "uniprot_accession": "P05475", "uniprot_release": "2026_03" } ], "pfam_id": "PF17581", "short_name": "DUF5483", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5484-pf17583.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17583", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5484-pf17583.yaml" } ], "pfam_ids": [ "PF17583" ], "protein_name": "Uncharacterized 5.1 kDa protein in Gp55-nrdG intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIKRMLFKQGLYTLNVTPKGDTTKWSVNDWIKFIDENGNWEI", "sequence_length": 43, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "065ac11130b64773f7b721e0c4e227bbcff3498a22b52203820dd15b0ea2bdeb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P07080.json", "taxon_id": "10665", "uniprot_accession": "P07080", "uniprot_release": "2026_03" } ], "pfam_id": "PF17583", "short_name": "DUF5484", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5485-pf17586.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17586", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5485-pf17586.yaml" } ], "pfam_ids": [ "PF17586" ], "protein_name": "Uncharacterized 6.4 kDa protein in HE65-PK2 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYFTSRFLSALGTSNTLAVRCMTVKMNAVDAELYRPRFIFCATSHFVRHTTLFTLS", "sequence_length": 56, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ecb8cbb8e26986956e6e2b07d2be72cc194c520a5a28d62b410a006667c8c857", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41669.json", "taxon_id": "46015", "uniprot_accession": "P41669", "uniprot_release": "2026_03" } ], "pfam_id": "PF17586", "short_name": "DUF5485", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5486-pf17588.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17588", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5486-pf17588.yaml" } ], "pfam_ids": [ "PF17588" ], "protein_name": "Uncharacterized 7.3 kDa protein in mobB-Gp55 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVATVKDEHPTSEIDYNKIRSSREEMMRRFKEAHDKAKAEGTITYKRIKFKSSNEPLYGVLCG", "sequence_length": 63, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9fd0efecfd6da5493c4767d9023c9c7b4cd3eaeeaa16eb55bb4124fbd948c5e7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P13328.json", "taxon_id": "10665", "uniprot_accession": "P13328", "uniprot_release": "2026_03" } ], "pfam_id": "PF17588", "short_name": "DUF5486", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5487-pf17589.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17589", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5487-pf17589.yaml" } ], "pfam_ids": [ "PF17589" ], "protein_name": "Uncharacterized 8.2 kDa protein in Gp46-Gp47 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFSTFDINDEFIANIDYTEEDSRYVGIIYITSKTAQGVVCMAEFDEYFLDYDDMIEWSKRYIKRNLL", "sequence_length": 68, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5df252936c9d0f78f1b535a90efa54564c914974f8919c17a7c9b3a53b7153f1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P32268.json", "taxon_id": "10665", "uniprot_accession": "P32268", "uniprot_release": "2026_03" } ], "pfam_id": "PF17589", "short_name": "DUF5487", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vaccinia virus (strain Copenhagen)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5488-pf17590.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5488-pf17590.yaml" } ], "pfam_ids": [ "PF17590" ], "protein_name": "Uncharacterized 8.6 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEYFISRTSIWTVFMLPIMYGPIKSMIEISRSSYNVSVIVNTPIGVITNAASMAAYVNDLLLIHFLLSLVEFFNT", "sequence_length": 76, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c8d08a588026e7c9be9351a1d9b08560c5ada9c5d4c8307bb8f12c9a36ce988e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P68626.json", "taxon_id": "10249", "uniprot_accession": "P68626", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vaccinia virus (strain Western Reserve)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5488-pf17590.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5488-pf17590.yaml" } ], "pfam_ids": [ "PF17590" ], "protein_name": "Uncharacterized 8.6 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEYFISRTSIWTVFMLPIMYGPIKSMIEISRSSYNVSVIVNTPIGVITNAASMAAYVNDLLLIHFLLSLVEFFNT", "sequence_length": 76, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c8d08a588026e7c9be9351a1d9b08560c5ada9c5d4c8307bb8f12c9a36ce988e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P68627.json", "taxon_id": "10254", "uniprot_accession": "P68627", "uniprot_release": "2026_03" } ], "pfam_id": "PF17590", "short_name": "DUF5488", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sulfolobus spindle-shape virus 1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5489-pf17592.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17592", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5489-pf17592.yaml" } ], "pfam_ids": [ "PF17592" ], "protein_name": "Uncharacterized protein B-78", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDAISLALQTGLGPVVGVIIILAMMGLTYKIAGKIPAIITGIASAFVLMFMDFLPLFWGIAIIFGLIAGMVVTRDGD", "sequence_length": 78, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "67965b933da5d901392c75d236a9665b5f21a32f4d6bd8ac008332615d2a21bf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P20205.json", "taxon_id": "244589", "uniprot_accession": "P20205", "uniprot_release": "2026_03" } ], "pfam_id": "PF17592", "short_name": "DUF5489", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { 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], "protein_name": "Uncharacterized 8.5 kDa protein in mobB-Gp55 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRLTINLSGFLEEIPEVEAIPYLLKMYLREVLALDIDIDPENPYDTAFKSNGVELNYRYHLTDDDFYFILEK", "sequence_length": 72, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3d13852f1447435da4e086cf99e1a9eb4de408b04870bf019f7ab9ce24fce30d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P39489.json", "taxon_id": "10665", "uniprot_accession": "P39489", "uniprot_release": "2026_03" } ], "pfam_id": "PF17595", "short_name": "DUF5491", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"2026_03" } ], "pfam_id": "PF17596", "short_name": "DUF5492", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sulfolobus spindle-shape virus 1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5493-pf17597.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17597", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5493-pf17597.yaml" } ], "pfam_ids": [ "PF17597" ], "protein_name": "Uncharacterized protein A-82", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, 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"qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17598", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5494-pf17598.yaml" } ], "pfam_ids": [ "PF17598" ], "protein_name": "Uncharacterized protein C-84", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRWGRRDDRDTGKILRNRSRNRFNIYHYVSTVKKVKETERELLRLTQTWKAIRLISYNSVGISINRLTSRLIHKLHELLNGLIS", "sequence_length": 84, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bde901b9004a97e3ed256973dccea050406c76561b0efeeb01adb305be566301", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P20212.json", "taxon_id": "244589", "uniprot_accession": "P20212", "uniprot_release": "2026_03" } ], "pfam_id": "PF17598", "short_name": "DUF5494", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5495-pf17599.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17599", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5495-pf17599.yaml" } ], "pfam_ids": [ "PF17599" ], "protein_name": "Uncharacterized 9.8 kDa protein in Gp55-nrdG intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNEALINDLRLAGYEVNTNGIGLTQIEGNGFILEYEFSQWWLYANYGELIEYVDQFDSLDAALGAANLMKCLKLIHPLCFKIGLQIL", "sequence_length": 87, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "75f173cf2dc8da1a417890b9c4010fa92b5632dad5f4995681feee0016264438", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P07083.json", "taxon_id": "10665", "uniprot_accession": "P07083", "uniprot_release": "2026_03" } ], "pfam_id": "PF17599", "short_name": "DUF5495", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5496-pf17600.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17600", "section": "canonical_examples", "url": 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"sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P11040.json", "taxon_id": "46015", "uniprot_accession": "P11040", "uniprot_release": "2026_03" } ], "pfam_id": "PF17601", "short_name": "DUF5497", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5498-pf17602.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17602", "section": "canonical_examples", "url": 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"organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5499-pf17603.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17603", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5499-pf17603.yaml" } ], "pfam_ids": [ "PF17603" ], "protein_name": "Uncharacterized 11.8 kDa protein in Gp55-nrdG intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGKTYRRKDLKVRDYDYFGKRKAPDGVSHKDMVENIFRSDKWRRMKGIDSEVKDELNRQLRGEVRKLKKSVYIDDDFDYNTSQRVAKRKSNECYRYS", "sequence_length": 97, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b35059281c29ece630e2768f48395b5fa18d98e87b95f6d99701d1cdf4d787f3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P07079.json", "taxon_id": "10665", "uniprot_accession": "P07079", "uniprot_release": "2026_03" } ], "pfam_id": "PF17603", "short_name": "DUF5499", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human cytomegalovirus (strain Merlin)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5500-pf17604.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17604", "section": "canonical_examples", "url": 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"ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5500-pf17604.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17604", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5500-pf17604.yaml" } ], "pfam_ids": [ "PF17604" ], "protein_name": "Uncharacterized protein UL19", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSNALYELFRRRLPRAPVNTVMFLTRRTRDGFCGRLTSIATNSHYTMFVLDHGSVRIERPSQSEVDCASLMETLKRIRLRNSWVASEDELDVSRGDA", "sequence_length": 98, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fcef775c23a36ec5873c4801a7a4b2865949e24a3ca957c3ea2e5bd35d0eb70d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P16723.json", "taxon_id": "10360", "uniprot_accession": "P16723", "uniprot_release": "2026_03" } ], "pfam_id": "PF17604", "short_name": "DUF5500", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5501-pf17605.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17605", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5501-pf17605.yaml" } ], "pfam_ids": [ "PF17605" ], "protein_name": "Uncharacterized 12.4 kDa protein in IE1-IEN intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIIINMLGFNIFIETVYKFSDHTMERYHPYQRAPWSASIFKKNYNNVKVASYVEIPYTTNNADVEITYTTNAPSRPESKARRRLDFTNMTPLPCCIDDGSFAKPLL", "sequence_length": 107, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1494ba2d1c93b83d86a323310376fe462d348587bb89da2fc2bc6cbf2b92eb99", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41706.json", "taxon_id": "46015", "uniprot_accession": "P41706", "uniprot_release": "2026_03" } ], "pfam_id": "PF17605", "short_name": "DUF5501", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5502-pf17606.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17606", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5502-pf17606.yaml" } ], "pfam_ids": [ "PF17606" ], "protein_name": "Uncharacterized protein Lmo0206", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYIKGRLIFFFVVLVIALCSVLILLIIKISVWKDEPFHLSDAKEIECLGSCEIKNTNQKIHFFSIKENLFEEKGDIAGILNEDEQKVADKSIFIVILDDEKGIANEE", "sequence_length": 107, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e1c8fb80b0574362a016d9b3b2213b18ccbec0db364205fae21bbcad7a9e0013", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P33383.json", "taxon_id": "169963", "uniprot_accession": "P33383", "uniprot_release": "2026_03" } ], "pfam_id": "PF17606", "short_name": "DUF5502", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5503-pf17607.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17607", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5503-pf17607.yaml" } ], "pfam_ids": [ "PF17607" ], "protein_name": "Uncharacterized protein YedM", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFPLNDLSLKTQPVQLNKVTSNTESTIKQHELVSDDAIINELSSELVSCLGNGKFTPISEDSKLFNMLSEFKLLHSEYFEWGDYSLWFQDFSIYNKIGFIMIEKIRELVTHPFGIN", "sequence_length": 116, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a9b1250464a069d8b60a555d08270c761d3f6f21d9d180b46d428296dc098a42", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76322.json", "taxon_id": "83333", "uniprot_accession": "P76322", "uniprot_release": "2026_03" } ], "pfam_id": "PF17607", "short_name": "DUF5503", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5505-pf17610.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17610", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5505-pf17610.yaml" } ], "pfam_ids": [ "PF17610" ], "protein_name": "Uncharacterized 18.5 kDa protein in FP-SLP intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYDKFMIYLHLNGLHGEAKYYKYLMSQMDFENQVADEIKRFCETRLKPAISCNTLTAESLNTLVDSVVCKNGLLNPYAKEVQFALQYLFDDDEISKRDQDGFKLFLLHNYDRCENMEEYFLINNFSIADYEFEDMFEIVRIDCRDLLLLLAKYNM", "sequence_length": 155, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "51acd935d8a82e9944ec8355d0f7fc92ab51f7c318a86faf01809cae7731ee38", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P41466.json", "taxon_id": "46015", "uniprot_accession": "P41466", "uniprot_release": "2026_03" } ], "pfam_id": "PF17610", "short_name": "DUF5505", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Fowl adenovirus A serotype 1 (strain CELO / Phelps)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5506-pf17611.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17611", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5506-pf17611.yaml" } ], "pfam_ids": [ "PF17611" ], "protein_name": "Uncharacterized protein ORF17", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLYLCFGAAAPVSILWREELFWGFVAAVKRRWHTVYARTNVDIQYPMAYCVGIQSLSPCKCHVTVVVCLTFLDLRMSAINEATKIMRAFFKTFFYHHGKVPRGRWFKLYRNDWCKDPNLTVGNYIVASGALPLMLGWARSTGLRFSTFTYSDEALWSHRRRDRRLARRREKLENKVSG", "sequence_length": 179, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f34ba0ef05f10bf2750921dfb2cd74be7fb01f3bd69756f5544ca7e8bfdd7416", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P20743.json", "taxon_id": "10553", "uniprot_accession": "P20743", "uniprot_release": "2026_03" } ], "pfam_id": "PF17611", "short_name": "DUF5506", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5508-pf17621.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17621", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5508-pf17621.yaml" } ], "pfam_ids": [ "PF17621" ], "protein_name": "Protein YpjB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESRNSYENKIDEISSLSESKEHPIDIQEKKDAFVNEFKGVLFDKNTRSSELLFNFYECCYKFLPRAQPQDKIDSYNSALQAFSIFCSSTLTHNNIGFDFKLFPEVKLSGEHLETVFKYKNGDDVREIAKINITLQKEEGGLYNLRGLDFKGCFFSGQNFSNYDIQYVNWGTSLFDVDTPCIFNAPAYNKSNEKSLKPVSENGLSGVLTDRNNKIKLITGVAPFDDILFMDDDFDDSSSEDDPVENSPVVTSPVVSSSKSSFQ", "sequence_length": 263, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6f810c784f74a5ce4681f454be5bfbf619d87cca87b921fd1b7671d574272909", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P76612.json", "taxon_id": "83333", "uniprot_accession": "P76612", "uniprot_release": "2026_03" } ], "pfam_id": "PF17621", "short_name": "DUF5508", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Autographa californica nuclear polyhedrosis virus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5509-pf17625.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5509-pf17625.yaml" } ], "pfam_ids": [ "PF17625" ], "protein_name": "43 kDa protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKRANSRKPFLFYNEDYYCEKPKRYFHTNKVIFEKLDSYATNINRCRELLTDFFDYCLPKYYRRKNKFTLLFRLLEPVIKQAGASALTTVSNDQCRWLEINQFSGWEQRDNQYAHKWLIKVVGADMGQQILFIIKQVTKKFKTCNLGFHNYYKLFRRCLSILLFKHKEVFVQCLQVILKAAMPVKKKGVVKSNYAFAVTNALHYYIVDNPHLLCKDINVAIKVRRLLIKHEMLPTEKQIKLSFEKCSKGIEVPLYEKLLLNHMMRINDDNLQWPSLINNKKIMEWNANRCFDESNKILHVYIGQYYTSSCRRVKKSFFKYNGWNRQGRFCRTEKFCHLVNLQLNKDGSKKLKRVQRKLINCK", "sequence_length": 363, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "60d289bc073960b31740b83a3629bd40b1f04ad3bd212b8a31fbfb767b931351", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P34050.json", "taxon_id": "46015", "uniprot_accession": "P34050", "uniprot_release": "2026_03" } ], "pfam_id": "PF17625", "short_name": "DUF5509", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia conorii (strain ATCC VR-613 / Malish 7)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5510-pf17629.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17629", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5510-pf17629.yaml" } ], "pfam_ids": [ "PF17629" ], "protein_name": "Uncharacterized protein RC0131", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFKNLLCIIIFLGINLNVYAINSSSYTTDDIIKIVIILGIVILIFSPAKFRIIVIGTMLGLSCAYFTYKYIVPIFISLLNGP", "sequence_length": 82, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b559306dc93fb75eec78faf08e30a7c0684b0617a23cf68589954e0cbaca7b77", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q92JD6.json", "taxon_id": "272944", "uniprot_accession": "Q92JD6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rickettsia prowazekii (strain Madrid E)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5510-pf17629.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17629", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5510-pf17629.yaml" } ], "pfam_ids": [ "PF17629" ], "protein_name": "Uncharacterized protein RP098", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFKHVLLSIIIFLGINQNVYSINSNSYKTDDIIKIVIILGIVILIFSPAKFRIIVIGTILGLACAYFTYKYIIPIFIASLNAA", "sequence_length": 83, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6005f38e95f251a0bd98094f4e755cac18e6c2b8f1b5a9c601cc526a9537c2a9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZE49.json", "taxon_id": "272947", "uniprot_accession": "Q9ZE49", "uniprot_release": "2026_03" } ], "pfam_id": "PF17629", "short_name": "DUF5510", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus anthracis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5511-pf17630.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17630", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5511-pf17630.yaml" } ], "pfam_ids": [ "PF17630" ], "protein_name": "Uncharacterized protein pXO2-82/BXB0112/GBAA_pXO2_0112", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQNNFYMVEHVDQVKNEVHLSKYLFNKQVIVKVSEKEAAAYAEFMNGAVEHDSIPFVKYDEERGLICE", "sequence_length": 69, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bce08fb63d70a9ede393b619230c34b73dc8ce2f3e973d1d3a7451144dc84129", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RMV3.json", "taxon_id": "1392", "uniprot_accession": "Q9RMV3", "uniprot_release": "2026_03" } ], "pfam_id": "PF17630", "short_name": "DUF5511", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus anthracis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5512-pf17631.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17631", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5512-pf17631.yaml" } ], "pfam_ids": [ "PF17631" ], "protein_name": "Uncharacterized protein pXO2-32/BXB0031/GBAA_pXO2_0031", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCKRFKFLLAVSALFISITVVLAGCGGSSVPYKKDDTYKDSKDNFITITAENEWRVKGSQNSEANYKVESTEYKGDSHSVVAISVKEKINGSDPLLVVNDYHYYILSPRENGFSLTPIGTSHPNSAQWKEFQEGFKGANDKEEFLKKEVANVNKQNIFKKTN", "sequence_length": 162, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8261491660ac8ea6a7e2459231236d36700e4af8756396e10c8aa10e9f20c3b2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RN00.json", "taxon_id": "1392", "uniprot_accession": "Q9RN00", "uniprot_release": "2026_03" } ], "pfam_id": "PF17631", "short_name": "DUF5512", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus anthracis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5513-pf17632.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17632", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5513-pf17632.yaml" } ], "pfam_ids": [ "PF17632" ], "protein_name": "Uncharacterized protein pXO2-06/BXB0005/GBAA_pXO2_0005", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLSELKPNHDYAKEGKYLILSLRKKKGVRKDKFIEIPITWFDYNFGEKVEWLIVREYQPSVNGKEKYTNCKLENIHAQVSVVNVKGERMK", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "251d5fabe7e27e2a7423605265e486229e7220a76819048894c5a90c80364055", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RN26.json", "taxon_id": "1392", "uniprot_accession": "Q9RN26", "uniprot_release": "2026_03" } ], "pfam_id": "PF17632", "short_name": "DUF5513", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus anthracis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5514-pf17633.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17633", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5514-pf17633.yaml" } ], "pfam_ids": [ "PF17633" ], "protein_name": "Uncharacterized protein pXO2-83/BXB0113/GBAA_pXO2_0113", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKKVYYSIVSSTRFSRNEENRTIIEDNIKKGENHFLIRNDDYGECFEVDFEKNITEEENENWILEAVIDFAKKYRITEFELWKKHEGDSTYDKGFGIVIEGSMDNPILKFKEVYSGSLDDWNITWGKGKQTYEKIYFKLAL", "sequence_length": 142, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "48c39ffcea22f72ee53ae4083f59dd0d67b953d39b20e816a61f51fae1409b32", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RMV2.json", "taxon_id": "1392", "uniprot_accession": "Q9RMV2", "uniprot_release": "2026_03" } ], "pfam_id": "PF17633", "short_name": "DUF5514", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Severe acute respiratory syndrome coronavirus 2", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-orf14-pf17635.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17635", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-orf14-pf17635.yaml" } ], "pfam_ids": [ "PF17635" ], "protein_name": "Putative ORF9c protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQSCYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVMLLLLCCCLTD", "sequence_length": 73, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2c53f7ce32e8c17b1061c9c45b5e41de36a205de002763f95a651526a5f8088d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DTD3.json", "taxon_id": "2697049", "uniprot_accession": "P0DTD3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus Rp3/2004", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-orf14-pf17635.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17635", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-orf14-pf17635.yaml" } ], "pfam_ids": [ "PF17635" ], "protein_name": "Uncharacterized protein 14", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPSCYNFLKEQHCQKASTQKGAEAAVKPLLALHHVVAVIQEIQLLAAVGEILQLEWLAEAVKLPSRYCC", "sequence_length": 70, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "052487a9e1e96206946e8adec722600415e33738bd27bea3b5989f50501ff3df", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3I5I5.json", "taxon_id": "349344", "uniprot_accession": "Q3I5I5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Severe acute respiratory syndrome coronavirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-orf14-pf17635.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17635", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-orf14-pf17635.yaml" } ], "pfam_ids": [ "PF17635" ], "protein_name": "Uncharacterized protein 14", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLPPCYNFLKEQHCQKASTQREAEAAVKPLLAPHHVVAVIQEIQLLAAVGEILLLEWLAEVVKLPSRYCC", "sequence_length": 70, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bc8fe155579095404e156863a3912c7e327c6f22d14763d7be42027a12c685e3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7TLC7.json", "taxon_id": "694009", "uniprot_accession": "Q7TLC7", "uniprot_release": "2026_03" } ], "pfam_id": "PF17635", "short_name": "bCoV_Orf14", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia phage T7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5516-pf17637.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17637", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5516-pf17637.yaml" } ], "pfam_ids": [ "PF17637" ], "protein_name": "Protein 6.3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METVAYIGLGLCVLGVCLISWGLWDLARIIKSLHDTK", "sequence_length": 37, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7e83a798d046d44ee318bc9a21478c5cbc441fd0c504dacfa13266b99b42a234", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P03799.json", "taxon_id": "10760", "uniprot_accession": "P03799", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5516-pf17637.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17637", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5516-pf17637.yaml" } ], "pfam_ids": [ "PF17637" ], "protein_name": "Uncharacterized gene 6.3 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDAAKLITVAVLVGMLARGLWMFALIVRDVKRDSEIK", "sequence_length": 37, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e191f66b48d8833ce326d241182582f5a01086b43dadd5c178263854ba272a6b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P20328.json", "taxon_id": "10759", "uniprot_accession": "P20328", "uniprot_release": "2026_03" } ], "pfam_id": "PF17637", "short_name": "DUF5516", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sulfolobus spindle-shape virus 1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5517-pf17639.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17639", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5517-pf17639.yaml" } ], "pfam_ids": [ "PF17639" ], "protein_name": "Uncharacterized protein A-100", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSPQTRKEEELLEKQNSVFYLLTLGRKPYGSYLHIKIELDEDEKLEKEIYADNIKLENELRQLKRLYEVYQSVEIDDAQKAIQKEALLTIAKILSVFDF", "sequence_length": 100, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5aeb86d486d668a89ccb270f24d9d314cd39719ed38005f3f15d5a525bbe34ca", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P20194.json", "taxon_id": "244589", "uniprot_accession": "P20194", "uniprot_release": "2026_03" } ], "pfam_id": "PF17639", "short_name": "DUF5517", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17647", "short_name": "DUF5518", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17648", "short_name": "Luciferase", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5522-pf17653.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17653", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5522-pf17653.yaml" } ], "pfam_ids": [ "PF17653" ], "protein_name": "Uncharacterized protein C1orf53", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAARQIWARTGAALCRQPSAAPPPAPLWVRAGFRQQLSLTLCPANEGNCGGSAPSTPGRPERAARPSVSEELTAAERQIAELHAAACAAGQLNYVDPATGYVVLTQIAHLQRGECCGSACRHCPYGQVNVKDPSKKKQFNSYFYV", "sequence_length": 145, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "02deab2e0941b61362b571e2dbeb8c294b4e9791c15663cc3b28e32622712629", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VUE5.json", "taxon_id": "9606", "uniprot_accession": "Q5VUE5", "uniprot_release": "2026_03" } ], "pfam_id": "PF17653", "short_name": "DUF5522", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5520-pf17658.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17658", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5520-pf17658.yaml" } ], "pfam_ids": [ "PF17658" ], "protein_name": "Uncharacterized protein C10orf120 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIREWENGCPKIGKQRARDSRAQERMTTEGKLNKNGIPARVFNISDSFLNKESLSSQGDVCPASPLGIWTKFYKSDPRIALGKYSPLEKEILRLGGVHTVAARRFLTYKQEEERKMLKELQTLSADYKRVVDCRRQHTSPCATCGSLGKMWTAKVIVSPEEFRMPRRERLNVSKHIERMQLARALRSKQLLPYIERFRGSSLLPSGGLGPMARARAGEGQDDGNTDDGNDVHQKGRGEVESKTSKRQEIKMNVIFKSEEPQKCITSHPNDLKPFFPAKKAERSITGLTNRSLLHVSEFPGDLMLMNQDFLSRGIYPSYASQATRLEEENAWKEYMCKVAPHHY", "sequence_length": 343, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eea52249a6df4776b3b0ad8dc4fbc8b391428915a1ae3e427fab396272357380", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q32KT7.json", "taxon_id": "9913", "uniprot_accession": "Q32KT7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5520-pf17658.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17658", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5520-pf17658.yaml" } ], "pfam_ids": [ "PF17658" ], "protein_name": "Uncharacterized protein C10orf120", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIREWKNDCQRIEKQRASDTMVQERKNEKPVRIFNTNSSFQDQAPTCCQEDLSSASPLRIWSKFYRSDPRIALGKYSPLEKEILRLGGIHTIAARRLLAYKQEEECRMLKELQLLSPDYKQAMEYKKKHSSPCAICVPLEKIWTAKVIAPLEAFKMPQREQVNVSKHIERMRLARALGNHQPLPYIERFTRSSFLSGVGLGPMAKNKARRKEDNYDTHNCDDANQDKKEEAEGKNTKRREIKMNVVFKSKEPKKCLTYHGNDRKSFLPAKKPERSIAGLTNRNLFCISEFPGDLMLMNQDFISRRDHFSDLVKTYSLEEESIWKERMRKATPYHY", "sequence_length": 335, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e7e7e6628461ae8ef72b8fa5e8e8bd883b2037e017b73bdeadbf966c99523d68", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5SQS8.json", "taxon_id": "9606", "uniprot_accession": "Q5SQS8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5520-pf17658.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17658", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5520-pf17658.yaml" } ], "pfam_ids": [ "PF17658" ], "protein_name": "Uncharacterized protein C10orf120 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIKEWENHFQQYKSQRCGYPKAQEGTPAEGEQNSRKPSRICSDNHPWVVQDFPHHKEDLCTPSPLGIWTAFYKSDPRIALGKYSPMEQEIQHLGGVHTRAARRFLVEKQYKEWRMLRELQKQSADYKRAIELGRDPSSYAVCGPPEKIWTAKVSVPAEEFQTPHREVTGIKKHIKRMQLARALENKQSSTDIGRLSPKTDKFSEEGEDDDTDSNDKANRGEKGEAKFEPTNKREVILNVAFKSEETKSCVVCHRNDRKTFLPVKRPERRITGLTNRNLFPITGFPGDLMLMNQDFVSKGIHPSDAIKIYWLPEEDLFKGRKQRPACCPH", "sequence_length": 329, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6eac1331e725832f70275806938d5a8893ffe2a04e35bb6ae9ef5ec0895e3e62", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CDT9.json", "taxon_id": "10090", "uniprot_accession": "Q8CDT9", "uniprot_release": "2026_03" } ], "pfam_id": "PF17658", "short_name": "DUF5520", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/radx-pf17659.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17659", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/radx-pf17659.yaml" } ], "pfam_ids": [ "PF17659", "PF31100", "PF31101", "PF31102" ], "protein_name": "RPA-related protein RADX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGESGQPEAGPSHAGLDWPNPERNRAGVPGGVIRRAGSQGPRSWIQKVLEQIMDSPRQCVTPSEVVPVTVLAVQRYLLEDEPRDTVPKPPLYCYDVTISDGVYQEKCYLDPSLNSLVYQNILKVGIQMRISRVSCLYNEKRIGQGILCIDNVHCGETSDSISLETPFRNRAHQEKPERPLRGGKSHYLALWNNEDPYGDIWLTDKQPEEHNFSDTKIISLSHLEMTWTNRRNFPALLVRILHKSKLRYYGKPDKKMIEPYQTFLEVADSSGTVSVIMWNALCPEWYKSLRVGLVLLLQDYSVKKSYPFRIQPVPVDPQIKLISTMEICLNLRDPPTNIIIIPEKQVKPEWRLPKLNHRFTTRSELDDMPENCICDVIGLLVFVGRVQRSKKKENREDFWSYRWIHIADGTSEQPFIVELFSTSQPEIFENIYPMAYFVCTQLKVVRNDNQVPKLLYLTTTNESGVFITGHRGQPYTYDAKVKNFIQWIRTKSDSGEQKNMVIGGYYPYPPVPETFSKYSSSIKVESLLTAISEVRKEIEDLQYREQKRIAIQGIITAIKYIPHSSATESASASETLRNANRPSTSQAARVEIQERNGKRHQDDEPVNSQYFQTTSTNLSLSNKIRILQGPHANPVAVPQPGASVQTKGIKPGMPSIFNRRANINANLQGKARKTISDRWESQLWREKKFGLIDHLHYSRVYPESIPRKFMFEHRKFLSDQYNSQPAKYVPPEGRPPKLDDFKSARSLGHFEVTILGLNHEIAIDVAFLPMYCPEDIRTSQIDTLLTSMNYSCAYPQDTTGNDRLPGPRAVAGDIIKAATELDRVHIVGILDICNLGNNKVEVYLHKIYSPENTS", "sequence_length": 855, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c21d23e86576f585ef971e495afa16f143c9a61d51f9155de0b4e733f37a5c50", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NSI4.json", "taxon_id": "9606", "uniprot_accession": "Q6NSI4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/radx-pf17659.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17659", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/radx-pf17659.yaml" } ], "pfam_ids": [ "PF17659", "PF31100", "PF31101", "PF31102" ], "protein_name": "RPA-related protein RADX", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGESGQPQPGPSHAGLYLEHPERDQAGVPGGVIRRADSQRRRSWIQKVIEQITGSPRQCVTLSEVVPVTVLAVQRYLLEDEPRDTVPKPPLYCYDVTISDGVYQEKCYLDPSLNFLVYQNILKVGIEMRISRVSCLYNEKRLGQGILCIDKVHCGESLDVISVETPFRNRAHEEKPERPLRGGKSHYLALWNNEDPYGDIWKTNKQPEEFNFNNIKIISLSHLELTWNSRKNFPALLVRVLHKSKLRYYGKPNKKMIEPYQTYLEVADSSGMVSVILWNALCPEWYKSLRVGLVLLLQDYTVKKSYPLRIQPDPADPQMKLISTMEICLNLRDPPTNIVIIPEKQLKSEWKLPKLINRFITRSELDDMPEKSICDVIGLLSFVGRVQRSKKKENSEDFWSYRWIHITDGTSEQPFIVQLFSTSQPEVFENIYPMTYFVCTQLKVVRNNSQVPKLLYLTTTNESRALTTGGHRGLPYTYDTKAKKIIQWIKTKTNLEAKNTVIGGYYPYPPVPETFSKYSRFIKAESLLTTISEVKKVIEDLQYREQKRIAIQGIITAIKYIPYKHSAGSAPAPEAFWNASRPSTSQAAGKEDHCHERGSKRSQDDRPMGSQHFQYTSKVLSLCAKRKILQGPSANPVPVPQPHSSAQMKGSKHNTPSQESSTAYTTGKSRRITNDRWESQLWQDKKFSLRDHLHYGHVDPESIPRKFILEHEKFLTQQFNSQPAKYIPPEGKPPKLDEFQSARSLGHFEVTILGLNHEIAIDVAFLPMYSPEDVQASQIDTFLTCMNFSCVYPPAAPLSGRLPDPKAVAGDIVKAAADLDRVHIIGILDICNLGNNKVEVCLQKIYTPE", "sequence_length": 850, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "71959593019efc0dedd797020c2542aa24661bb6ef31515b7a41beeb7508cdf1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8C779.json", "taxon_id": "10090", "uniprot_accession": "Q8C779", "uniprot_release": "2026_03" } ], "pfam_id": "PF17659", "short_name": "RADX", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cc2d2a-n-terminal-c2-domain-ipr028928.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028928", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cc2d2a-n-terminal-c2-domain-ipr028928.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/centrosomal-protein-of-76-kda-c-terminal-ipr056288.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056288", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/centrosomal-protein-of-76-kda-c-terminal-ipr056288.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5523-ipr041510.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041510", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5523-ipr041510.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cc2d2an-c2-pf15625.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cc2d2an-c2-pf15625.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5523-pf17661.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17661", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5523-pf17661.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q6DHV5", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF15625", "PF17661", "PF24652", "PF24656" ], "protein_name": "Protein CC2D2B", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4d4dc3e193c3b974e2da65cd2850d2900887662bbf7b508773349db845b8a222", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MKKSQREDIFKKMSEEMDNITAEEIIDKHLQKDLDAEENQNVAKTLRGKVREKLKISKINKGEKSSTEQLIDSEIHQRSKLSPQTEVSLDESLSFFILSGEEGSALGKSSEQRPVNRSYPKCFSLGVNLQNVAESEEEEFMKEFILTDILKVKAADYEDDQEQIKKQKANIFVPSSSPVVNQRKLPKDMMPRILEDEGFYIQRKPEIYKKTCNKMENRLLKLEEGKCWFGESGEIMSLPTPIKQSWNFRLNVRKEPLNPLLKTIYRKAVKYDLGSSFMNKMEGSREIYQLDLNIVGLQFSHHHLFNQEQVLCARLLQLYECFQDRQQQNVSQLLYEKLKALTDATKLSNENSEINQLTRKSLQDYYWQISNTKQMYDLERGKDLSLLHSILRTWKQIKSLRHGQGFTSTPIKLQVQRIKMNKCDEQEQISEMSETEKKNEGKELKNGKKLESLSYLASDETEIERIKPITLRPQLSFTAELTSLSKCSLHEQKRRAKIQKLKYFIKIFYNNKQVSCTSVSPLQFDFKVMFQQIFNIQLMYWPEVICLEVYEKSKRTSLLAKLYIPLPNYTELKGKTALQYVEFSSDKLVMPADGEVGSNVPFLLEGNGTEELCLLTSGKLSYSLSWSLDENGLPLIPMPQSLRSSYCSMLRNVDARSVPGIPWLMNEQKLFEWANEVRIDPNNPEYSDLMESVTYMRLKGQDIPKYFRLEQLQDEFNFVSEEEMAKSKRFQLLQLRNAGQLDNFLLQQMPLHDTEIPDLVFQEYESQKEKEVSVSDVNSITAQRINSANFLKKVRRLIMKRIVKISKCNLSDIVNDYEEIVSTSQLTDAVCKFVEPRRKLKPQRKERKKVTAQAISDGDIKILVRIVRAYNIPTRKTTINGSLDMPTCLKSSISCLRHRETIKSVASDETLHEDTVHPFVEVSFQHTVYKTNTASGSHPCWNEEIKVDFVSPGHDYSFSSLSKIKDNIYINIFDEMMTEKHEDHCLKSCSGHSYIRKNWLGCIVFPFSALLQQSEISGTFQVTIPPVLLGYTWSNTYVFPKEDSNEQNLKECTFLNIFATIEPQISYVTCNPTLDKFLDQTEVLQRAQIFKKNCKAMFPNRRIVTTVFNDEGIQFLVTRYIKALNPPQQLLDIFLHNSNATFDLIARFVSLIPFVPNTPDENDGSDIWMTSEHCISLAIGNKEEHAILLCNFFLYFGKKALVLLGTSVLEGHVAYVVTQETNEYLLWNPSTGQCYKQFDPFCPLKSVDCLFDDRNVWFNIQQNNTPMAVFFDYSKESFWKQLLPKNVQGTKIQSIQPEEIIYFETDKSMVEDLRNRIERTLKSKVMEWRPKHPTHWNRQCTFILRQILPKLEFGIGSFVSSEGDNEFERILQFYWVTGFPIQMPYIDVQSIIDAVYQTGIHSAEFPQTEFALAVYIHPYPNNILSVWVYLASLVQHQ", "sequence_length": 1437, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4d4dc3e193c3b974e2da65cd2850d2900887662bbf7b508773349db845b8a222", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q6DHV5.json", "taxon_id": "9606", "uniprot_accession": "Q6DHV5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cc2d2a-n-terminal-c2-domain-ipr028928.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028928", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cc2d2a-n-terminal-c2-domain-ipr028928.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cep76-drc7-peptidase-like-domain-ipr056290.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5523-ipr041510.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041510", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5523-ipr041510.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cc2d2an-c2-pf15625.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cc2d2an-c2-pf15625.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cep76-c-pf24652.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24652", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cep76-c-pf24652.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5523-pf17661.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17661", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5523-pf17661.yaml" } ], "pfam_ids": [ "PF15625", "PF17661", "PF24652", "PF24656" ], "protein_name": "Coiled-coil and C2 domain-containing protein 2A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTNDEKMKIISEDFTGDGVDTEAGRRKKNSKVRRQQRKKKPPASPPEEMVSDKFQDGGQQEVVEEEPETNLLSLTARRGPRSLPPIPSASRTGFAEFSMRERMREKLQAARSKAESALLRDVPTPRPRRLRSPSREKETETEFGTEPSTEVQDTQKEDDTKSYSRIKFRDSVRKIKSKPQLPPGFPSAEEAYNFFTFNFDPEPEESEEKSPVKGGERAHHEDQEGEEGTQAQERAKKTEEEELLNGKDAEDFLLGLDPTAHDFVAVRAAEYKSARIQLQKEKEILFTPSRLTVPTYKKLPENIQPRFLEDEGLYIGARPEVARTNENIMENRLLIQEPGSKWFGDDGRILALPSPIKPFPSRPSLTTREQSPKAGLETLYKKAEKYVHSRQHMIGSGDPPGNFQLDIDISGLIFTHHPCFSREHVLASKLAQLYDQYLARQQRNKTKFLTDKLQALRKAVQTSLNPEKPHQSLDTTQKTINEYKSEIRQTRKLRDAEQEKDRTLLKTIIKVWKEMKSLREFQRFTNTPLKLVLRKEKVDPKLDEDAYEAEIQAEIHELLEEHMEEYATKMEEYRTSHQQWKAWRKAQRAKKKKKKQTTEEHLEEEEAEESFPEEEVTKPIPPEPTDPAVIEQQVRERAAHSRRRPGEPTLIPELSLAGNVTPNDQCPRVEVSRREDVRRRSVYLKVVFNSKEVSRTVSRPLGADFRVHFGQIFNLQIFNWPESLMLQVYETIGHSGTTLLAEVFLPIPETTLVTGRAPIEEVEFSSNQHVTLDHEGVGSGVPFSFEADGSNQLTLMTSGKVSHSVAWAVGENGIPLIPPLSQQNIGFRSALRRADAISSIGTSGLTDMKKLAKWAAESKLDPNDPNHAPLMQLISVATSGESYVPDFFRLEQLQQEFNFVSEEELNRSKRFRLLHLRSQEVPEFRNYKQIPAYDREIMEKVFQDYEKRLRDRNVIETKDHLDMHRATVAKYLQQVREAVVNRFLTAKHHFLLTDLVVEEEVPNISSEGSGILGLSLFKLAEQKRPLRPRRKGRKKVTAQNLSDGDIKLLVNIIRAYDIPVRKPVVSKFQQPSRSSRTFSEKQTASPSTHSPLHNADYPLGQVLVRPFVEVSFQRTICHTTTAEGPNPSWNEELELPFRAPNGDYSTASLQSVKDDVYINIFDEVLYDILEDDRERGSGIHTRIERHWLGCVKIPFSTIYFQARIDGTFKIDIPPVLLGYSKERNIIMERAFDSARSLSEGSYITLFITIEPQLVPGEPMREKMSDMLKKFDTQEDEKLLQATEKFQAECALKFPQRQCLTTVTDMTGKTVFITRYLKPLNPPQELLHVYPNNPQATAELVARYVSLIPFLPDSVSFAGVCDLWSTSDQFLDLLAGDEEEHAVLLCNYFLFLGKKAWLVMGSAIPEGPTAYVLTWEKNYYLIWNPCSGHCYGQFDAFCPLKSVGCLIGPDNIWFNIQHHDSPLRINFDVTKPKLWKSFFSRSLPYPGLSSVQPEELIYQHTDKAVAAELQDRIEKILKEKIMDWRPRHLTRWNRYCTSTLRHFLPLLERSQGEDIEDDHRAELLKQLGDYRFSGFPLHMPYSEVKPLVEAVYSTGVHNIDLPNVEFALAVYIHPYPKNVLSVWIYVASLVRNR", "sequence_length": 1633, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ceba41b9e2ae9c6825f17bec61d6a66f3adfb0b1da61805d9be7c331a4a77374", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CFW7.json", "taxon_id": "10090", "uniprot_accession": "Q8CFW7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cc2d2a-n-terminal-c2-domain-ipr028928.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR028928", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cc2d2a-n-terminal-c2-domain-ipr028928.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/centrosomal-protein-of-76-kda-c-terminal-ipr056288.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056288", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/centrosomal-protein-of-76-kda-c-terminal-ipr056288.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cep76-drc7-peptidase-like-domain-ipr056290.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056290", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cep76-drc7-peptidase-like-domain-ipr056290.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5523-ipr041510.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041510", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5523-ipr041510.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cc2d2an-c2-pf15625.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cc2d2an-c2-pf15625.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cep76-c-pf24652.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24652", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cep76-c-pf24652.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cept76-peptidase-pf24656.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cept76-peptidase-pf24656.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5523-pf17661.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17661", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5523-pf17661.yaml" } ], "pfam_ids": [ "PF15625", "PF17661", "PF24652", "PF24656" ], "protein_name": "Coiled-coil and C2 domain-containing protein 2A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNPREEKVKIITEEFIENDEDADMGRQNKNSKVRRQPRKKQPPTAVPKEMVSEKSHLGNPQEPVQEEPKTRLLSMTVRRGPRSLPPIPSTSRTGFAEFSMRGRMREKLQAARSKAESALLQEIPTPRPRRLRSPSKKELETEFGTEPGKEVERTQQEVDSQSYSRVKFHDSARKIKPKPQVPPGFPSAEEAYNFFTFNFDPEPEGSEEKPKARHRAGTNQEEEEGEEEEPPAQGGGKEMDEEELLNGDDAEDFLLGLDHVADDFVAVRPADYESIHDRLQMEREMLFIPSRQTVPTYKKLPENVQPRFLEDEGLYTGVRPEVARTNQNIMENRLLMQDPERRWFGDDGRILALPNPIKPFPSRPPVLTQEQSIKAELETLYKKAVKYVHSSQHVIRSGDPPGNFQLDIDISGLIFTHHPCFSREHVLAAKLAQLYDQYLARHQRNKAKFLTDKLQALRNAVQTGLDPEKPHQSLDTIQKTINEYKSEIRQTRKFRDAEQEKDRTLLKTIIKVWKEMKSLREFQRFTNTPLKLVLRKEKADQKADEEAYEAEIQAEISELLEEHTEEYAQKMEEYRTSLQQWKAWRKVQRAKKKKRKQAAEEHPGDEIAEPYPEEDLVKPSPPEPTDRAVIEQEVRERAAQSRRRPWEPTLVPELSLAGSVTPNDQCPRAEVSRREDVKKRSVYLKVLFNNKEVSRTVSRPLGADFRVHFGQIFNLQIVNWPESLTLQVYETVGHSSPTLLAEVFLPIPETTVVTGRAPTEEVEFSSNQHVTLDHEGVGSGVPFSFEADGSNQLTLMTSGKVSHSVAWAIGENGIPLIPPLSQQNIGFRSALKKADAISSIGTSGLTDMKKLAKWAAESKLDPNDPNNAPLMQLISVATSGESYVPDFFRLEQLQQEFNFVSDQELNRSKRFRLLHLRSQEVPEFRNYKQVPVYDREIMEKVFQDYEKRLRDRNVIETKEHIDTHRAIVAKYLQQVRESVINRFLIAKQYFLLADMIVEEEVPNISILGLSLFKLAEQKRPLRPRRKGRKKVTAQNLSDGDIKLLVNIVRAYDIPVRKPAVSKFQQPSRSSRMFSEKHAASPSTYSPTHNADYPLGQVLVRPFVEVSFQRTVCHTTTAEGPNPSWNEELELPFRAPNGDYSTASLQSVKDVVFINIFDEVLHDVLEDDRERGSGIHTRIERHWLGCVKMPFSTIYFQARIDGTFKIDIPPVLLGYSKERNMILERGFDSVRSLSEGSYITLFITIEPQLVPGESIREKFESQEDEKLLQATEKFQAECALKFPNRQCLTTVIDISGKTVFITRYLKPLNPPQELLNVYPNNLQATAELVARYVSLIPFLPDTVSFGGICDLWSTSDQFLDLLAGDEEEHAVLLCNYFLSLGKKAWLLMGNAIPEGPTAYVLTWEQGRYLIWNPCSGHFYGQFDTFCPLKNVGCLIGPDNIWFNIQRYESPLRINFDVTRPKLWKSFFSRSLPYPGLSSVQPEELIYQRSDKAAAAELQDRIEKILKEKIMDWRPRHLTRWNRYCTSTLRHFLPLLEKSQGEDVEDDHRAELLKQLGDYRFSGFPLHMPYSEVKPLIDAVYSTGVHNIDVPNVEFALAVYIHPYPKNVLSVWIYVASLIRNR", "sequence_length": 1620, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "35a0ba0fedc40f395b1427f0ec641a5cdc075ee1a489a20b56f8dc13dceb63e7", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9P2K1.json", "taxon_id": "9606", "uniprot_accession": "Q9P2K1", "uniprot_release": "2026_03" } ], "pfam_id": "PF17661", "short_name": "DUF5523", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5524-pf17662.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17662", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5524-pf17662.yaml" } ], "pfam_ids": [ "PF17662" ], "protein_name": "Uncharacterized protein C7orf57 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNTSKELHGAASRYAPCDWYYHLPVKQSEKAVDAPPASQIPGLSDPREAPSGHTLGLRRYWVKETDSEYVKLAKQGGRPDLLKHFAPGTTKGSPVAYSLPDWYIHHSKPPTADQRQVPAVSIPDYMVYEEFNPDQATGNFESRMGPFDFDMKTIWQREAEELEKEKKKVRLPAIKSKYPSKVGTPLGHREPAGSKLSFPPIPGQRPSSPTNFSKLISNGYKDEWLQQQADSDKRAPQTPQSSVSSPSPLDAELPADPEAPGDTTEAAESSPLSSAAPPPDSTPVELK", "sequence_length": 288, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5d76a73d187e0fa1f05a88396da1054659a12096b535b131d4252f18355b6c91", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0JNL1.json", "taxon_id": "9913", "uniprot_accession": "A0JNL1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5524-pf17662.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17662", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5524-pf17662.yaml" } ], "pfam_ids": [ "PF17662" ], "protein_name": "Uncharacterized protein C7orf57 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNTSKEVQSTSYRYAPCDWYYHLPVKRSEKPVGAPPASQIPGLSDLRDSPNVNLPRARRYWIKETDSEYVKLAKQGGRPDLLKHFAPGTRQGSPVAYSLPDWYIHHSKPPTSHQREVPVVSIPDYMVYEEFNPDQANGSYESRQGPFDFDRKTIWQREAEELENVKRKVKLPAINSKNPSKTGTPVSHKEPERSRLSLPPMPGQKNSSPTNFSKLISNGYKDEWLQQQKAEADRRTPKTSRASVSSKSTEDSKSNQDTETPENPETPEGSEKTPDAEVSSPSESTPAELK", "sequence_length": 291, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a184b7e3eb8b0df402c789d2423b26f1e3bc50ea3f4eac43cfb1b0a0ce4dae00", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5SS90.json", "taxon_id": "10090", "uniprot_accession": "Q5SS90", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5524-pf17662.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17662", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5524-pf17662.yaml" } ], "pfam_ids": [ "PF17662" ], "protein_name": "Uncharacterized protein C7orf57", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRNTSKELQGATHRYAPCDWYYHVPVKRSEKAVDAPPASQIPGLSNLGDSHSENLPGTRRYWIKETDSEYVKLAKQGGRPDLLKHFAPGTRKGSPVAYSLPDWYIHHSKPPTASQQEVRAVSMPDYMVHEEFNPDQANGSYASRRGPFDFDMKTVWQREAEELEKEKKKLRLPAIDSKYLSKAGTPLGPKNPAGSRLSFPPVPGQKNSSPTNFSKLISNGYKDEWLQQQQRADSDKRTPKTSRASVLSQSPRDLEGPQDAARLQDAEASEGPEDTPESSQSPEESVSASTPAELK", "sequence_length": 295, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0fb55bd2b21b6a2c4e33aae76807d61482e5caea7c02b820b2f0ab91fa56e458", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NEG2.json", "taxon_id": "9606", "uniprot_accession": "Q8NEG2", "uniprot_release": "2026_03" } ], "pfam_id": "PF17662", "short_name": "DUF5524", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5525-pf17663.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17663", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5525-pf17663.yaml" } ], "pfam_ids": [ "PF17663" ], "protein_name": "PRMT2-interacting protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEKRPLGPLGPMMYGKLPRLEPDPGPGHSLPLSASSQDSCNYKGAYFSCPIGGTSKAGSERLASWTPYPSLYPTGVAGSPLRGDNLLTNCLLYRPPTEGSEKIQDSSELLPFGPQAHAYPGPPLAAPKPVYRNPLCYGLSTCLGDGGTKRSLDGDWTLVTGPLLPSADPPCPLATAPGKGQPLDGTFLRGLPSGGPGKDSSLPFSPCQAFLEKYRTIQSTGFLASKYTSPYPGDAKQAMSEGPSSPWTQLAQPLGPPCQDAVAAHYPLPPPPQALPCPPSCHPEKQGSYGSLLPLPPLGAHKGAAYQAGGLGSPYLRQQAPQAPYMPPLGIDSYSYSSAPLPAPSPGLKLEPPLAPRCPLDFVPQTLGFPYARDDLSLYGASPGLGGTPPSHSQNSVQPVPQPGAFQRACQPLPASQPCSEPVRPAEKPTPEAQEKMWLPSCRKEQLQPRPNERPGVPIVIRDSPVPRTSPALHPCAKERQSVPQKDARPPSSPPMPVIDNVFSLAPYRDYLDVQTPEPRAERDSAPATSKSQDKDCKGNLPAQDGASRSHCSLREEVALDLSVKKTMAEGVPVKVPSPEVHEKPAEAVDGPGIENTVSGLPGLKKMVTEIPEVTAEATPRTNFHSSVAFMFRKFKILRTAPVPAAIVSSPTTPAPVPAPAPAQPVPNPPSVPVGLQILTQPLPVACFNLALPSPPAIVASPAPASAPPPSPAPAPAPASGPAPSSAQVPTAAPVDSPEQHFTGLHTSLCDAISGSVAHSPPEKLREWLETTGPWGQAAWQDCQGVQGLLGKLLSQLQKFVCTQRCPFPHVVRAGAIFVPIHLVKERLFPKLPPASVDHVLQDHRVELRPTTLSEERALRERALHGCTSRMLKLLALRQLPDIYPDLLGLQWHDCVRRQLGGFDTEARTLSPSEPTVTRDEPESQALAGKLPAPKVKKPGRKPPTPGPEKAEAATGEGSRNPSPSSGASTSPPGPTLRARFRNLLENAWLNGVALPTWGHKASGADRSSPHPQLLGSQTHHL", "sequence_length": 1023, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d76695d6d40e39bb8a5e6d32bf6a402d5582fef0798d62f4dbe7a023e093e102", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3TEI4.json", "taxon_id": "10090", "uniprot_accession": "Q3TEI4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5525-pf17663.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17663", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5525-pf17663.yaml" } ], "pfam_ids": [ "PF17663" ], "protein_name": "PRMT2-interacting protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAEKRPLRTLGPVMYGKLPRLETDSGLEHSLPHSVGNQDPCTYKGSYFSCPMAGTPKAESEQLASWTPYPPLYSTGMAGPPLQADNLLTNCLFYRSPAEGPEKMQDSSPVELLPFSPQAHSYPGPPLAAPKPVYRNPLCYGLSTCLGEGAVKRPLDVDWTLATGPLLPSADPPCSLAPAPSKGQTLDGTFLRGVPAEGSSKDSSGSFSPCQPFLEKYQTIHSTGFLASRYTGPYPRNSKQAMSEGPSSPWTQLAQPLGPPCQDTGPTHYPPPHHPPPHPPQALPCPPACRHPEKQGSYSPALPLQPLGGHKGTGYQAGGLGSPYLRQQAAQAPYIPPLGLDAYPYPSAPLPAPSPGLKLEPPLTPRCPLDFAPQTLSFPYARDDLSLYGASPGLGGTPPSQNNVRAVPQPGAFQRACQPLPASQPCSEPVRPAQEAEEKTWLPSCRKEKLQPRLSEHSGPPIVIRDSPVPCTPPALPPCARECQSLPQKEGARPPSSPPMPVIDNVFSLAPYRDYLDVPAPEATTEPDSATAEPDSAPATSEGQDKGCRGTLPAQEGPSGSKPLRGSLKEEVALDLSVRKPTAEASPVKASRSVEHAKPTAAMDVPDVGNMVSDLPGLKKIDTEAPGLPGVPVTTDAMPRTNFHSSVAFMFRKFKILRPAPLPAAVVPSTPTSAPAPTQPAPTPTSGPIGLRILAQQPLSVTCFSLALPSPPAVAVASPAPAPAPSPAPARAQAPASARDPAPAPAPVAGPAPASTSAPGDSLEQHFTGLHASLCDAISGSVAHSPPEKLREWLETAGPWGQAAWQDCQGVQGLLAKLLSQLQRFDRTHRCPFPHVVRAGAIFVPIHLVKERLFPRLPPASVDHVLQEHRVELRPTTLSEERALRELALPGCTSRMLKLLALRQLPDIYPDLLGLQWRDCVRRQLGDFDTEAGAVSSSEPTVARGEPESLALAQKSPAPKVRKPGRKPPTPGPEKAEAAAGEESCGASPTPATSASPPGPTLKARFRSLLETAWLNGLALPTWGHKSSRPDQPSPCPQLLDSQSHHL", "sequence_length": 1047, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ddadefc0dd75ac216068f407c5969ce20c2dea142b83d7249f4b574011227fe8", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZRI6.json", "taxon_id": "9606", "uniprot_accession": "Q6ZRI6", "uniprot_release": "2026_03" } ], "pfam_id": "PF17663", "short_name": "DUF5525", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hoatz-like-pf17664.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17664", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hoatz-like-pf17664.yaml" } ], "pfam_ids": [ "PF17664" ], "protein_name": "Cilia- and flagella-associated protein HOATZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METRPSSSLSSPEESCEAFPQGLLVFTGSSDRDANLAKQFWIGASMYPHNESQLVLSRGSSQRLPVARPSRSSAPEKTYFQPFFLEESKSRDVTAETLKIQESEEKKKYLQKAKKRDEIIQLLRKQREERILKELISLPHKPKGKVHKAKKVISESDKEDQEEVKALD", "sequence_length": 168, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cc0e8c3192363462e5e28f55ee4e8852cb7d0c8e35d503bbbf6149f9afad65c7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q32P68.json", "taxon_id": "9913", "uniprot_accession": "Q32P68", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hoatz-like-pf17664.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17664", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hoatz-like-pf17664.yaml" } ], "pfam_ids": [ "PF17664" ], "protein_name": "Cilia- and flagella-associated protein HOATZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METGPSEEPSGRKESQEMCPPGLLVFAGSSEQDANLAKQFWISASMYPPSESQLVLRRDSSQRLPVARPRRSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVKYLQKAKTREEILQLLRKQREERISKELISLPYKPKAKEHKAKKVVSESDKEDQEEVKTLD", "sequence_length": 169, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5d86df5001c015d4cc0c173f7123149ad7f75e6a4d11256feba8c84de0308f61", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PI97.json", "taxon_id": "9606", "uniprot_accession": "Q6PI97", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hoatz-like-pf17664.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17664", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hoatz-like-pf17664.yaml" } ], "pfam_ids": [ "PF17664" ], "protein_name": "Cilia- and flagella-associated protein HOATZ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METGPRGCPSGRKESQEICSPGLLVFTGCSEQDANLAKQFWLGASMYPTTESQLVLTRGSSQRLPVARNSKVVLREKSSVQPFPFDQDKDAIIFAKAQRIQESEERAKYLQKAKTRDEILQLLRKQREERISKELISLPYKPKDKVPKSKEVLSESGLRDQEEVKALE", "sequence_length": 168, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "896003b4f385620db773c4a9fd79cc9f84f676bac56cb48532f544095dd472cb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q80Y73.json", "taxon_id": "10090", "uniprot_accession": "Q80Y73", "uniprot_release": "2026_03" } ], "pfam_id": "PF17664", "short_name": "HOATZ-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5527-pf17665.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17665", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5527-pf17665.yaml" } ], "pfam_ids": [ "PF17665" ], "protein_name": "Uncharacterized protein C10orf105", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCKPAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYMESTKM", "sequence_length": 133, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0b0348fef693029a7ed73ea68dd19bba5ce71aa9b0f04832e388b2aec86a8284", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TEF2.json", "taxon_id": "9606", "uniprot_accession": "Q8TEF2", "uniprot_release": "2026_03" } ], "pfam_id": "PF17665", "short_name": "DUF5527", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5528-pf17666.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17666", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5528-pf17666.yaml" } ], "pfam_ids": [ "PF17666" ], "protein_name": "Uncharacterized protein C5orf52", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTQPTRPSVTCDQGSSTIGGTAAQATTSSSATSGSNYQRDRLGRRPEIGVGGQPQICFPRPRSAQQPVLFSLMNSSEAAMKKTLPKSHLSRVIIHDNRITQRIYEMEVSALEKTKKKISHYYEHLKKKFMTEQLRKLGRWREESVNSNRYLTFGIPPPV", "sequence_length": 159, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "45a7fee3522b80796d6105c2479b061d7bec81ba3a8b6a9493a96906f46830dc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A6NGY3.json", "taxon_id": "9606", "uniprot_accession": "A6NGY3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5528-pf17666.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17666", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5528-pf17666.yaml" } ], "pfam_ids": [ "PF17666" ], "protein_name": "Uncharacterized protein C5orf52 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLGLASFPESLSSQSETATQPRRPSVKWDLGSDYRKGTEETTASGSNFRRERLDSQPDLGLHVQPQIYFLRPRSPLPKLLFSLMNTNDANVKKLLPKSHLSRVIIRDNLNAQRICEMEMKASDKTKRKMSYLYDHLKKKFMMDQLRKMIRWRRDSQSTQDYLDKERV", "sequence_length": 168, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cf54434bbfe04ddb69d748f53ea7ab6362605fab7a735c0ca603d61bb65d309c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CR34.json", "taxon_id": "10090", "uniprot_accession": "Q9CR34", "uniprot_release": "2026_03" } ], "pfam_id": "PF17666", "short_name": "DUF5528", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5529-pf17669.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17669", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5529-pf17669.yaml" } ], "pfam_ids": [ "PF17669" ], "protein_name": "Uncharacterized protein C11orf91 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKGRRGSQSPTMSQRPAPPLYFPSLYDRGISSSPLSDFNIWKKLFVPLKAGGAPAGGAPAAGGRSLPQGPSAPAPPPPPGLGPPSERPCPPPWPSGLASIPYEPLRFFYSPPSGPEAAASPLAPGPMTSRLASASHPEELCELEIRIKELELLTITGDGFDSQRYKFLKALKDEKLQGLKTRQPGKKSASLS", "sequence_length": 193, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a1eb3a5bca75fe29b9b4d1fbb2132c41a73d51fd39c40fc92f1a83b16448169e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8WFF7.json", "taxon_id": "9913", "uniprot_accession": "A8WFF7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5529-pf17669.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17669", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5529-pf17669.yaml" } ], "pfam_ids": [ "PF17669" ], "protein_name": "Uncharacterized protein C11orf91", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKGRRGSHSPTMSQRSAPPLYFPSLYDRGISSSPLSDFNIWKKLFVPLKAGGAPVGGAAGARSLSQALPAPAPPPPPPPGLGPSSERPWPSPWPSGLASIPYEPLRFFYSPPPGPEVVASPLVPCPSTPRLASASHPEELCELEIRIKELELLTITGDGFDSQSYTFLKALKDEKLQGLKTKQPGKKSASLS", "sequence_length": 193, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "82d1a08b6c6cbe83b1746d8c06122836864d83303f34957f81770560b56befb7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3C1V1.json", "taxon_id": "9606", "uniprot_accession": "Q3C1V1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5529-pf17669.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17669", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5529-pf17669.yaml" } ], "pfam_ids": [ "PF17669" ], "protein_name": "Uncharacterized protein C11orf91 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKGRRGSQNPKMSQRPAPPLYFPSLYDRGISSSPLSDFNIWKKLFVPLKAGGTPAAGVAGVAGVRSLPLAPPATVPPPPPGLGPPSERPCPPPWPSGLASIPYEPLRFFYSPPPGPEMATSALVPGSTTPWLASASHPEELCELEIRIKELELLTITGDGFDSQRYKFLKALKDEKLQGLKMSRQPGKSASCS", "sequence_length": 194, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3d2d8b874403d85328c6349501d85540141d03ae2ccc5908d2b5ca994776c28d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D1Z2.json", "taxon_id": "10090", "uniprot_accession": "Q9D1Z2", "uniprot_release": "2026_03" } ], "pfam_id": "PF17669", "short_name": "DUF5529", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5530-pf17670.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17670", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5530-pf17670.yaml" } ], "pfam_ids": [ "PF17670" ], "protein_name": "Protein SPMIP3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAIRLREFIDRRPAIPPSIFIVHQGKDLRGYYTGQLARVHYDYSVKRSPRPLIDLDIPFKKKSQYQPQLDQQTLIQYICFRRRSKPAEPWYKETSYQRDYSLPFYKTDWDRKLATVSSNPRPLNSLPEHYCCEGRWL", "sequence_length": 138, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "105c5f48237b3eda0895da0b4e592d0b1f6e1cdfefdafbc860d3e79af17f9691", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q32L72.json", "taxon_id": "9913", "uniprot_accession": "Q32L72", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5530-pf17670.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17670", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5530-pf17670.yaml" } ], "pfam_ids": [ "PF17670" ], "protein_name": "Protein SPMIP3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTAIRLREFIERRPVIPPSIFIAHQGRDVQGYYPGQLARLHFDHSAKRAPRPLIDLTIPPKTKYHYQPQLDQQTLIRYICLRRHSKPAEPWYKETTYRRDYSLPFYEIDWNQKLATVSLNPRPLNSLPELYCCEERSSFERNAFKLK", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fe06df6e9942f723bdfec57b9fa998c30ecfa0d1bcf0f1f1bb55ca5608ae860d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5SVJ3.json", "taxon_id": "9606", "uniprot_accession": "Q5SVJ3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5530-pf17670.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17670", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5530-pf17670.yaml" } ], "pfam_ids": [ "PF17670" ], "protein_name": "Protein SPMIP3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSTIRLREFVERRPSIPPRLYITHQGRDIKGYYPGQLARLHFDYSGRKAPRPLIDLTIPLKSTTPYQPQLDQQTLIRSICSRRLSRPTDLWHNETSYQRDYSLPFYESGWDRKLGTISLHPRPVNSVPEVYCCGGERSSYARSTF", "sequence_length": 145, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "68fbd0c0fa5823461f051fe313040b1f2de06df499bf18baed9b6952b915ce07", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9DAA7.json", "taxon_id": "10090", "uniprot_accession": "Q9DAA7", "uniprot_release": "2026_03" } ], "pfam_id": "PF17670", "short_name": "DUF5530", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5531-pf17671.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17671", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5531-pf17671.yaml" } ], "pfam_ids": [ "PF17671" ], "protein_name": "Testis-expressed protein 46", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLHGILASAGTIGAVAAWLMSYKPALFGFLFLLLLLSNWLVKYEHKLTLPEPQQDEILQRLLFSEMKMKVLENQMFIIWNKMNHHGRSSRHRNFPMKKHRMRRHESICPTLSDCTSSSPS", "sequence_length": 121, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "47feff58b8604d026d2b4c3c94ed1427338aac14df39e967a093583b830c2fde", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/H3BTG2.json", "taxon_id": "9606", "uniprot_accession": "H3BTG2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5531-pf17671.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17671", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5531-pf17671.yaml" } ], "pfam_ids": [ "PF17671" ], "protein_name": "Testis expressed 46", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLGELIFLLRSLHGFLASSGPIGAALAWLISFKPILFAFLLLLLLLSNWLVKQEHNLAPSPPQEEAETTTAPEVHPKNNVKNKEELEKINACFALQDKVLERLMFSEMKLKALENQVFVIWNKINRRRWSSRQRNFSRRRHRSRRHDSTFSTLSKCTTVTPTECD", "sequence_length": 165, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b2da1cadb97d2d49c68b956ee22bf11b40e86e0c73a8bcd6ec9181b5015ccf27", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CPU3.json", "taxon_id": "10090", "uniprot_accession": "Q9CPU3", "uniprot_release": "2026_03" } ], "pfam_id": "PF17671", "short_name": "DUF5531", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fimp-pf17672.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17672", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fimp-pf17672.yaml" } ], "pfam_ids": [ "PF17672" ], "protein_name": "Fertilization-influencing membrane protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLWLWVAVGVWMLMAELGTIETAPRRDGTRPSVSGARPQQVVNRLFFDYPDSDRASLLAVARFIGEKPITFVKTDSSPGLFQNILVGTLVVAFFFLLFQFCLHVNFQKGA", "sequence_length": 111, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "76678c1fbb5fa5e1f39a156e68e7ab0eec9ae1437fcc5e28b47187dbaa58f412", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/E9Q9R3.json", "taxon_id": "10090", "uniprot_accession": "E9Q9R3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/fimp-pf17672.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17672", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/fimp-pf17672.yaml" } ], "pfam_ids": [ "PF17672" ], "protein_name": "Fertilization-influencing membrane protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGAGVGVAGCTRGHRNWVPSQLPPREIKAGVSLAVVTEFAWVLAPRPKRATASALGTESPRFLDRPDFFDYPDSDQARLLAVAQFIGEKPIVFINSGSSPGLFHHILVGLLVVAFFFLLFQFCTHINFQKGA", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7cd4d82f5a59c9fa17df54833e94afe076801a5ebaf794e18b1c991e210a50d7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96LL3.json", "taxon_id": "9606", "uniprot_accession": "Q96LL3", "uniprot_release": "2026_03" } ], "pfam_id": "PF17672", "short_name": "FIMP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5532-pf17673.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17673", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5532-pf17673.yaml" } ], "pfam_ids": [ "PF17673" ], "protein_name": "Uncharacterized protein C9orf153", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFLTGDTSPAEDNREATLPQCSLPELYACIENFNKESKKSNLLKMHGISLNEAQEVLARNLNVMSFTRGADVRGDLQPVISVNKMNKPGKHRKTPSPKINK", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "31221d1d769763a0ba42cb7f0c68d63fa10db289de608118db2d5c59130b25bf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5TBE3.json", "taxon_id": "9606", "uniprot_accession": "Q5TBE3", "uniprot_release": "2026_03" } ], "pfam_id": "PF17673", "short_name": "DUF5532", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-viral-process-go0048524.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0048524", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-viral-process-go0048524.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tm250-pf17685.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17685", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tm250-pf17685.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:H0YL14", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF17685" ], "protein_name": "Transmembrane protein 250", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b9c1fb56d0c38412e10c7dd1a0ccadb65589dd00fe341633fcf439cec76dbe51", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPVMPIPRRVRSFHGPHTTCLHAACGPVRASHLARTKYNNFDVYIKTRWLYGFIRFLLYFSCSLFTAALWGALAALFCLQYLGVRVLLRFQRKLSVLLLLLGRRRVDFRLVNELLVYGIHVTMLLVGGLGWCFMVFVDM", "sequence_length": 139, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b9c1fb56d0c38412e10c7dd1a0ccadb65589dd00fe341633fcf439cec76dbe51", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/H0YL14.json", "taxon_id": "9606", "uniprot_accession": "H0YL14", "uniprot_release": "2026_03" } ], "pfam_id": "PF17685", "short_name": "TM250", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5534-pf17686.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17686", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5534-pf17686.yaml" } ], "pfam_ids": [ "PF17686" ], "protein_name": "Uncharacterized protein C19orf18", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKVQSGFLILFLFLMECQLHLCLPYADGLHPTGNITGLPGSKRSQPPRNITKEPKVFFHKTQLPGIQGAASRSTAASPTNPMKFLRNKAIIRHRPALVKVILISSVAFSIALICGMAISYMIYRLAQAEERQQLESLYKNLRIPLLGDEEEGSEDEGESTHLLPENENELEKFIHSVIISKRSKNIKKKLKEEQNSVTENKTKNASHNGKMEDL", "sequence_length": 215, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "92c004d17a7b69acee19ee89d875cd91c81382db9b16e16b591c4f11b5ea4b9a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NEA5.json", "taxon_id": "9606", "uniprot_accession": "Q8NEA5", "uniprot_release": "2026_03" } ], "pfam_id": "PF17686", "short_name": "DUF5534", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17687", "short_name": "DUF5535", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5536-pf17688.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17688", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5536-pf17688.yaml" } ], "pfam_ids": [ "PF17688" ], "protein_name": "Uncharacterized protein C17orf107", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKGTPSSLDTLMWIYHFHSSTEVALQPPLLSSLELSVAAAHEYLEQRFRELKSLEPPEPKMQGMLPAPKPTLGLVLREATASLVSFGTTLLEISALWLQQEARRLDGSAGPAPDGRDPGAALSRVAQAAGQGVRQAGAAVGASARLLVQGAWLCLCGRGLQGSASFLRQSQQQLGLGIPGEPVSSGHGVS", "sequence_length": 190, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "90f79da486288689d82530b93b4c098b0ce260db9f13e9a4fb8797492fd01c4d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZR85.json", "taxon_id": "9606", "uniprot_accession": "Q6ZR85", "uniprot_release": "2026_03" } ], "pfam_id": "PF17688", "short_name": "DUF5536", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5537-pf17690.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17690", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5537-pf17690.yaml" } ], "pfam_ids": [ "PF17690" ], "protein_name": "Putative uncharacterized protein C8orf89", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVLSPEIKCETSKFTRSSFGSCLIFESSWKKAVLETQKIKKEYTTAFGLEELKECIKMPYLPGLQSCQKSVSSTPLEVPKRLPRADAEVSAVRLKKTKETCSVAPLWEKSKGSGFSDPLTGAPSQYLERLSKIAILEYDTIRQETTTKSKKSKKRDLRDR", "sequence_length": 161, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2b17b54da9ca7fbd24b49f39325e8850b42cbc161668e030d0db9d59f8e9b0cf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DMQ9.json", "taxon_id": "9606", "uniprot_accession": "P0DMQ9", "uniprot_release": "2026_03" } ], "pfam_id": "PF17690", "short_name": "DUF5537", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5538-pf17692.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17692", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5538-pf17692.yaml" } ], "pfam_ids": [ "PF17692" ], "protein_name": "Putative uncharacterized protein C19orf73", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRLKVGFQGGGCFRKDALCLEGGVSARWARAPHSAPLRPPRELHAAPPPATPTQTVVRPAGFPRRTRLMVRSAPPTQRPPTGSGCVSGLWRKGLGLRPQTLLRVGSVVLSSAPALRPRLGPCLRPPPSD", "sequence_length": 129, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "25cfa60bd857805c3c87577fc5ca30d0d8f52a442e95d275094861860a698a79", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NVV2.json", "taxon_id": "9606", "uniprot_accession": "Q9NVV2", "uniprot_release": "2026_03" } ], "pfam_id": "PF17692", "short_name": "DUF5538", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17693", "short_name": "DUF5539", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5540-pf17694.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17694", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5540-pf17694.yaml" } ], "pfam_ids": [ "PF17694" ], "protein_name": "Putative uncharacterized protein encoded by LINC03041", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARFQRTKEREEDRCSLNIYYVRNTTQGTAPACVGKRMQPSPTGKGGKCCTVHGLTRKIHNVQPNLQSPILSAACVD", "sequence_length": 77, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dbcf4a98fe2bc7ca60a55b8bfd5ec0034c8f4c40de37cda660c95146bd6f7bd1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6NGG3.json", "taxon_id": "9606", "uniprot_accession": "A6NGG3", "uniprot_release": "2026_03" } ], "pfam_id": "PF17694", "short_name": "DUF5540", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5541-pf17695.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17695", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5541-pf17695.yaml" } ], "pfam_ids": [ "PF17695" ], "protein_name": "Uncharacterized protein C12orf76", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFQNLQGTFEKEIGKIIPFTIAFKRAEAVEPDGCVQSWRCCLPCDLGQASRFIHTTVCSAIRWRSCKGERNFAERHILPAELEEQSNHAGMGPILPAMPSVDGNHFQHPAGDCHPYGILCLQAHSASVTARQVLQ", "sequence_length": 135, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3f00b7aed5efbfa4357332adfef5db57206cb4513a7f2d8f6f2ec2e909177880", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N812.json", "taxon_id": "9606", "uniprot_accession": "Q8N812", "uniprot_release": "2026_03" } ], "pfam_id": "PF17695", "short_name": "DUF5541", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/aln-pf17696.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17696", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/aln-pf17696.yaml" } ], "pfam_ids": [ "PF17696" ], "protein_name": "Sarcoplasmic/endoplasmic reticulum calcium ATPase regulator ARLN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVGQAASGTDGVRERRGSSAARRRSQDEPVQSGMNGIPKHSYWLDLWLFILFDLALFIFVYLLP", "sequence_length": 65, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6600f914afc10bf0174590f3bcd832ae751101c843ae66285a6b6a6048e48db7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q498U0.json", "taxon_id": "10116", "uniprot_accession": "Q498U0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/aln-pf17696.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17696", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/aln-pf17696.yaml" } ], "pfam_ids": [ "PF17696" ], "protein_name": "Sarcoplasmic/endoplasmic reticulum calcium ATPase regulator ARLN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVDAPGVDGRDGLRERRGFSEGGRQNFDVRPQSGANGLPKHSYWLDLWLFILFDVVVFLFVYFLP", "sequence_length": 66, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9e548d7582b10d7bb78f73ca52543bd89426885dec51ac99e7654b18e4e2ea81", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WVX3.json", "taxon_id": "9606", "uniprot_accession": "Q8WVX3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/aln-pf17696.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17696", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/aln-pf17696.yaml" } ], "pfam_ids": [ "PF17696" ], "protein_name": "Sarcoplasmic/endoplasmic reticulum calcium ATPase regulator ARLN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVSQAASGTDGVRERRGSFEAGRRNQDEAPQSGMNGLPKHSYWLDLWLFILFDLALFVFVYLLP", "sequence_length": 65, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "327c7566059f7329d20a8c7f69b970826d2f0533e7d52a860d9d7daa28271d7b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q99M08.json", "taxon_id": "10090", "uniprot_accession": "Q99M08", "uniprot_release": "2026_03" } ], "pfam_id": "PF17696", "short_name": "ALN", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5543-pf17697.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17697", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5543-pf17697.yaml" } ], "pfam_ids": [ "PF17697" ], "protein_name": "Putative protein SEM1, isoform 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYCQDSNICAVFAVQGGKVGRKHGIKRGRRPSIRSPAQRARGPWIHESKHPAFAKQQINLEMPNSRATTELAWVCSSTSRKKKWARSLTLSTAPLSPPPSLVHCEDCSCLPGCHSGDLYNLAPAERTC", "sequence_length": 128, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ce551902c05d9b6dc1260e8d7dab4c3087fabf2704ecf0694da53321193d343b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZVN7.json", "taxon_id": "9606", "uniprot_accession": "Q6ZVN7", "uniprot_release": "2026_03" } ], "pfam_id": "PF17697", "short_name": "DUF5543", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5544-pf17698.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17698", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5544-pf17698.yaml" } ], "pfam_ids": [ "PF17698" ], "protein_name": "Testis-specific protein LINC02914", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHRKEPGARLEATRGAARPHKQGTKPMITRPSVSQLGEGKCPSSQHLQSLRHNKQHALTLTKARCCGECSTCFCTEEKSECQRHEETSPGSCNHQIMSASTISAFCATPRFKQLFKGTVEQMSQM", "sequence_length": 125, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6f9b0ba41abb6996a4d418466a6d372546b910371ea1990a5d172cf026ca4e86", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q52M58.json", "taxon_id": "9606", "uniprot_accession": "Q52M58", "uniprot_release": "2026_03" } ], "pfam_id": "PF17698", "short_name": "DUF5544", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5545-pf17699.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17699", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5545-pf17699.yaml" } ], "pfam_ids": [ "PF17699" ], "protein_name": "Putative uncharacterized protein LINC02693", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGEKSRRKGPAPRHADGKLGRTCDHPYAPWSFTPSSRAPTAWVRPPCPVWASRLQEHSPEPRRARAPPTRRAQAALYAPALRLRDHLDRFSILMTSCTSWLQAPQAPGLCRDEQSSRISVPQLSGAPILLPDLEGTKLSNFQESSPLPHKHERKDKRSTPEEEGRSAPEKIIQSLKLCPGGHRPASLSSGCPAGCRLSFNLPPSMLLSVQKCCMPSSLKTC", "sequence_length": 221, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "019e89442fd8a49b4ff7d49465523ecc34972cbc2fc669af17018c2c266f2c9a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8MQB3.json", "taxon_id": "9606", "uniprot_accession": "A8MQB3", "uniprot_release": "2026_03" } ], "pfam_id": "PF17699", "short_name": "DUF5545", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17700", "short_name": "DUF5546", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5547-pf17701.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17701", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5547-pf17701.yaml" } ], "pfam_ids": [ "PF17701" ], "protein_name": "Uncharacterized protein C2orf15", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFSLSKSATQVSAIHMDSKVDDHLIRGTEKSRLEPATQLFQNTKKIRLEDTNQENFTRIEGTGTGSLSGKALGSVVYVKESDGLEMTDVE", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2c4d8f14951d9d5bd9582e76b76bc7a47a57dbbb1d6f1c130c006571c013d50e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WU43.json", "taxon_id": "9606", "uniprot_accession": "Q8WU43", "uniprot_release": "2026_03" } ], "pfam_id": "PF17701", "short_name": "DUF5547", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5548-pf17702.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5548-pf17702.yaml" } ], "pfam_ids": [ "PF17702" ], "protein_name": "Uncharacterized protein C7orf33", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQVEVQSLSLEECPWRLPGPQCECEALLPSGARRRIDLRLSGRAVAVWVHVRGGPGQFNLSYATGRHKKPNPHQNMNRGMEFIAPVSAPTKSGAPWHFLSQGPTDAQRAVRIRPGTRMGLSSDPVVGTLSSSYLDLLTLSYKPGRTVTSSYLNVRGHEVRKLQNSVEATRISRTDSS", "sequence_length": 177, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4c517ab5d1f7a8e185dfdbe8fd0adfd2b42ceea707965b4cd9ef46def790f9ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WU49.json", "taxon_id": "9606", "uniprot_accession": "Q8WU49", "uniprot_release": "2026_03" } ], "pfam_id": "PF17702", "short_name": "DUF5548", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/c19orf84-pf17703.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17703", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/c19orf84-pf17703.yaml" } ], "pfam_ids": [ "PF17703" ], "protein_name": "piRNA-mediated silencing protein C19orf84 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDELEDGALSNGDNLSLPSAGTESWPTSATPGLPPSLLSTLDPTHLGLPEQLASVTVPIRLDTLSYLLHSALLGTYNLQQSLPPCSCTAQPSHIWPDTVRRPPRRSGQARGGWEVRRRPSRGWGRGRGRGRVWAQSQRGPERAEERERNMAGEPGAGPSTPPVTPPSQDGQKEAGGLSEDWEADY", "sequence_length": 185, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6ca25634f5e71d2b2fe8e35bee6bc7845aa7ebfc21be8dc7acb4901eb173e838", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/H3BKT1.json", "taxon_id": "10090", "uniprot_accession": "H3BKT1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/c19orf84-pf17703.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17703", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/c19orf84-pf17703.yaml" } ], "pfam_ids": [ "PF17703" ], "protein_name": "piRNA-mediated silencing protein C19orf84", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLNSTDPTHLGLPESVASVTVPIRLDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAEDWETEY", "sequence_length": 186, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "052ea065716c47ef02513cd7ef2a650e70c64973d155839b776813ee72433520", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/I3L1E1.json", "taxon_id": "9606", "uniprot_accession": "I3L1E1", "uniprot_release": "2026_03" } ], "pfam_id": "PF17703", "short_name": "C19orf84", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5550-pf17704.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17704", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5550-pf17704.yaml" } ], "pfam_ids": [ "PF17704" ], "protein_name": "Uncharacterized protein LINC03040", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMPLAEAGALAQGGGPSATEWACILRRKTPRHKQPTLLMVRASRRSGKTSAVLKAGRQSVSGRKNSTSKDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTRGPVERAAAAAAAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGLRLRLPRRESLLRGLCRPLRPLLGFRESDSAKPASLRLLQHTPSARRNYRIAGARLMRSNYPPPLSSAALRGAGPTRRN", "sequence_length": 242, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "35376105f131dbf816a2b9b2d7f81faf1033bf948c6836673c860ebe65d614e2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N319.json", "taxon_id": "9606", "uniprot_accession": "Q8N319", "uniprot_release": "2026_03" } ], "pfam_id": "PF17704", "short_name": "DUF5550", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17705", "short_name": "DUF5551", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5552-pf17706.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17706", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5552-pf17706.yaml" } ], "pfam_ids": [ "PF17706" ], "protein_name": "Putative uncharacterized protein C11orf40", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALVQALVPREREPKLSILQMDRGDPQHSSHWCPEREKVKLLTLKPRETSKNILINFYRAFNLDKDVFIHQANHPLTVPSSVVMGDNGHTLAEDDKRPCFRVLPCYLERVSSGISISWISAPLPVGAMKHQLLCDLMDLITLSFWLAGQCMSLKATNMQHCKCSIATSDWAIELDRTDYKTLPSEYSILALLQVFAGKNCMDRVLLHVDVNYLKSLP", "sequence_length": 217, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f1995bb11e263e0f44a5da4ffed7b3a84cdbec388495b45e40276702f41c4ffd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8WZ69.json", "taxon_id": "9606", "uniprot_accession": "Q8WZ69", "uniprot_release": "2026_03" } ], "pfam_id": "PF17706", "short_name": "DUF5552", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5553-pf17707.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17707", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5553-pf17707.yaml" } ], "pfam_ids": [ "PF17707" ], "protein_name": "Uncharacterized protein LINC03042", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRPLGKGLLPAEELIRSNLGVGRSLRDCLSQSGKLAEELGSKRLKPAKFGTEGKERVEQRTERQRTGSSKEPRMQIICRRRWREPPPRLLWGCLMPRAQPLLHVTAYENTGHWERLASVVSSKTQQPTVISHSSISITFSHYPPATLDSFLVLEPIKLFPVSSLRSPLCLNCGSCRESIRISGELIGNAHSPAPPRTPELETLGWDKQAVLSGAQVILVCAEV", "sequence_length": 223, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "423eb0b4aea10223edcce857be1f6be620f8b2efacefbd4f92ef0e7b9ca394e2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZUL3.json", "taxon_id": "9606", "uniprot_accession": "Q6ZUL3", "uniprot_release": "2026_03" } ], "pfam_id": "PF17707", "short_name": "DUF5553", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17709", "short_name": "DUF5554", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5555-pf17710.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5555-pf17710.yaml" } ], "pfam_ids": [ "PF17710" ], "protein_name": "Uncharacterized protein DOCK8-AS1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRHSVARPTRLPRRLSPFWDPATCKNLEGGAGEVVRGRDPRRLRTSRSTEILGEDLAGPSAGAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVGNHPRDS", "sequence_length": 295, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b0de5743f3d88d53a9ad7bdd7083334daa1e3b3c2013dd8daf18f6734890a368", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T8R8.json", "taxon_id": "9606", "uniprot_accession": "Q5T8R8", "uniprot_release": "2026_03" } ], "pfam_id": "PF17710", "short_name": "DUF5555", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5556-pf17711.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17711", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5556-pf17711.yaml" } ], "pfam_ids": [ "PF17711" ], "protein_name": "Putative uncharacterized protein encoded by LINC02694", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELQGAQEDLGISLSSPRRNHETRPGSKAKGRSSICLQASVWMAGGKLRLRASEHLTQGHQQELRDWNLGEDASLLFSKSPFGAGKLIQAPAHVFRQCWVQGNAWISCITKFDSKRSPEVASSPSYLTVPRRSPLPVFLRPSDRCVCGGCYLGKSTRRRACQSLLSDPLGVTFPTQTRP", "sequence_length": 179, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "67733606286f22984fa515baf02c0939aa54db4158f77cb5b44affe7e3c09666", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NAA6.json", "taxon_id": "9606", "uniprot_accession": "Q8NAA6", "uniprot_release": "2026_03" } ], "pfam_id": "PF17711", "short_name": "DUF5556", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5557-pf17712.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17712", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5557-pf17712.yaml" } ], "pfam_ids": [ "PF17712" ], "protein_name": "Uncharacterized protein encoded by LINC03043", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGAERVCTKAPEITQDEAEIYSLTNMEGNIGIKGCEFKSWLFKFYQARSQVLLCGEVKNPYLLTSNKTTVKEQNACLTHPDRSAMAGLLL", "sequence_length": 90, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ebd9d583c78f74b45b1c3bc32baf4e58e6660921b61b0ed4ff4e4694da214aaa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A4D0Y5.json", "taxon_id": "9606", "uniprot_accession": "A4D0Y5", "uniprot_release": "2026_03" } ], "pfam_id": "PF17712", "short_name": "DUF5557", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5558-pf17713.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17713", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5558-pf17713.yaml" } ], "pfam_ids": [ "PF17713" ], "protein_name": "Uncharacterized protein encoded by LINC02881", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRMYSSDAHERPPSPSLGTTPPHPLPPTGSPRPRQDSAAGNSEEREPRGLRRASGVGSSCKRPTVCMGRQQGLPFCTVCGYRCSSPERTRGRCAVGKVRVAGGGGAPGGGAGMRCCGCRERNINKELELF", "sequence_length": 130, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a8cc10407ee411a6b4f049a65265f0f8f00248bca6f5c96dac6726c8fcc60bde", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B7Z368.json", "taxon_id": "9606", "uniprot_accession": "B7Z368", "uniprot_release": "2026_03" } ], "pfam_id": "PF17713", "short_name": "DUF5558", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5559-pf17714.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17714", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5559-pf17714.yaml" } ], "pfam_ids": [ "PF17714" ], "protein_name": "Uncharacterized protein C20orf203", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFPRPVLNSRAQAILLPQPPNMLDHRQWPPRLASFPFTKTGMLSRATSVLAGLTAHLWDLGGGAGRRTSKAQRVHPQPSHQRQPPPPQHPGPYQERIWVGGEGWGEVGGLRLSKVGRRDREVGRGLRAPAGRGRAMGGMPRMGTVGDFGQALSSLAWTSTCFQDFCLPSLPGKLPAPLISKQQFLSNSSRSLFN", "sequence_length": 194, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "deb234d0f50478c26ebc08cb63ca5b428aa839defe96095cf6a5fe5fca8d1b84", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NBC4.json", "taxon_id": "9606", "uniprot_accession": "Q8NBC4", "uniprot_release": "2026_03" } ], "pfam_id": "PF17714", "short_name": "DUF5559", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF17715", "short_name": "DUF5560", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rimc1-pf17716.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17716", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rimc1-pf17716.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:A6NDU8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF17716" ], "protein_name": "RAB7A-interacting MON1-CCZ1 complex subunit 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "f1bd649666ad76c145e17513f44a027b726decc8d2c09a68d9b725e128d37d49", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAAAVSSVVRRVEELGDLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNPSNLLELYTQAILDMTYFEENKLVDEDFPEDSSSQKVKELISFLSEPEILVKENNMHPKHCNLLGDELLECLSWRRGALLYMYCHSLTKRREWLLRKSSLLKKYLLDGISYLLQMLNYRCPIQLNEGVSFQDLDTAKLLSAGIFSDIHLLAMMYSGEMCYWGSKYCADQQPENHEVDTSVSGAGCTTYKEPLDFREVGEKILKKYVSVCEGPLKEQEWNTTNAKQILNFFHHRCN", "sequence_length": 294, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "f1bd649666ad76c145e17513f44a027b726decc8d2c09a68d9b725e128d37d49", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6NDU8.json", "taxon_id": "9606", "uniprot_accession": "A6NDU8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/rimc1-pf17716.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17716", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/rimc1-pf17716.yaml" } ], "pfam_ids": [ "PF17716" ], "protein_name": "RAB7A-interacting MON1-CCZ1 complex subunit 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAAVSGVVRRVEELGDLAQAHIQHLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNPSNLLELYTQAILDMTYFEENKLVDEDFPEDCSPQKVKELLAFLSEPEILAKESNMHPKLCGLLGAELLECLSWRRGALLYMYCHSLTKRREWLLRKSNLLQKYLVDGINYLLQMLNYRCPVQLNEGVSFQDLDTAKLLSTGVFSDIHVLAMMYSGEMCYWGLKHCTDQQSENHEVDTDVFGASCTTHKETLDFREVGEKILKKYVSVCEGPLKEQEWNTANAKQILSFFQQRCS", "sequence_length": 294, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8c4c48ef97624cff51880cd1236a4101e3bc0a6288c13343c0415a20baab5552", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BR90.json", "taxon_id": "10090", "uniprot_accession": "Q8BR90", "uniprot_release": "2026_03" } ], "pfam_id": "PF17716", "short_name": "RIMC1", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5562-pf17717.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5562-pf17717.yaml" } ], "pfam_ids": [ "PF17717" ], "protein_name": "Uncharacterized protein C20orf141", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTRLCLPRPEAREDPIPVPPRGLGAGEGSGSPVRPPVSTWGPSWAQLLDSVLWLGALGLTIQAVFSTTGPALLLLLVSFLTFDLLHRPAGHTLPQRKLLTRGQSQGAGEGPGQQEALLLQMGTVSGQLSLQDALLLLLMGLGPLLRACGMPLTLLGLAFCLHPWA", "sequence_length": 165, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "83981cc1fc424ac8e56c209d59861107b4c7822b73543e68bd390597812d5d5d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NUB4.json", "taxon_id": "9606", "uniprot_accession": "Q9NUB4", "uniprot_release": "2026_03" } ], "pfam_id": "PF17717", "short_name": "DUF5562", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5563-pf17718.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17718", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5563-pf17718.yaml" } ], "pfam_ids": [ "PF17718" ], "protein_name": "Uncharacterized protein C2orf80", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERRLIKKEMKKLLGDYIGIRLRENEFDPKGRRQLTFLDDMAHYDLAISVALQWLDPSEDLTWLEWEELKIPLHGRPIYPNRREREAMILSSYAGILMNSIPIEEVFKIYGADSSADSGTIKVPRVSSLCLSLHPFAMLTAPKAAAYARKQSVKSRKVTTNKNATSISAKEANATEWKSSQRFSDTQPKHKVT", "sequence_length": 193, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9c05253f5016f97b5202b988120903dc3244e688bc6a1b1d9db7c71ff71c370b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q0P641.json", "taxon_id": "9606", "uniprot_accession": "Q0P641", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pongo abelii", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5563-pf17718.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17718", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5563-pf17718.yaml" } ], "pfam_ids": [ "PF17718" ], "protein_name": "Uncharacterized protein C2orf80 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPEAEKEQKHWNRSQAHYDLAISVALQWLDPSEDLTWLEWEELKMPFHGRPIYPNRREREAMILSSYAGILMNSIPIEEVFKIYGADSSADSGTIKVPRVSSLRLSLHPFAMLTAPKAAAYARKQSVKSRKGTTNKNATSISAKEANATEWKSSQRFSNTQPKHKVT", "sequence_length": 168, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cc6c23dce9e50d623723526887880010950d626e8250009850237064c1da18bd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5RDL5.json", "taxon_id": "9601", "uniprot_accession": "Q5RDL5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5563-pf17718.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17718", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5563-pf17718.yaml" } ], "pfam_ids": [ "PF17718" ], 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"data/traits/sequence/profile/oca.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS52003", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/oca.yaml" } ], "pfam_ids": [ "PF17721" ], "protein_name": "POU domain class 2-associating factor 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSVPRDYSKRVYQGVRVKHTVKDLLAEKRSRQTSNTRLNGSVSSSQPPFIQMPGSPVMSGYYGVRRSFLSDSDFHSSKQFSNDLYTSGMSKPFACESTAGQSHTGLLESYLAEPYGDYRPPALTPTPSSLFSTSTLPPLLPPPFPSDPTHFVFRDSWEQTVPDGLSQPDPMPADALQSLPPSTSCLSQLESGSSTQHRNMGWGASLAGAQSYSLHALEDLHHTPGYPTSPPYPFTSFMTVSNDLPPKVGPLSPEEGSDVSSLHDPSPWTKEDGSMAWGSYECRRAY", "sequence_length": 287, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a1550710fa6e0c7803685dda91ba9a7224db81b220574727642fc6e235c19b51", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D8Q6.json", "taxon_id": "10090", "uniprot_accession": "Q9D8Q6", "uniprot_release": "2026_03" } ], "pfam_id": "PF17721", "short_name": "POU2AF2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/iftap-pf17722.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17722", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/iftap-pf17722.yaml" } ], "pfam_ids": [ "PF17722" ], "protein_name": "Intraflagellar transport-associated protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPAKTPELEMMDEDRLIEEVLDKFVNCHEQTYEEFLRTFTHLSKDNVTKREAFGTNSSENNFTSIKFTQRNEPNDCRLSNKAIFLHTSSQCSEEEQIMIGDGQKAGSSFQGDLNRAGKVKVDNFLDIEDLDLDEEINPQLSKDVLLLPGQVEQEVSLSVPSYIPSVAIQPVTPGTKPRPTVKAADKQSKEIVGDEVQPFSLDEEFDYDAVVLTPKFTPAEMNAIKELSKQKTKSADLEDPHD", "sequence_length": 242, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c3a0b199b4f03142af97f8cf05ee5e64704baf3a93de491a6318ef589cd9152b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3ZBP0.json", "taxon_id": "9913", "uniprot_accession": "Q3ZBP0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/intraciliary-transport-particle-a-binding-go0120160.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0120160", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/intraciliary-transport-particle-a-binding-go0120160.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/iftap-pf17722.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17722", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/iftap-pf17722.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q86VG3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF17722" ], "protein_name": "Intraflagellar transport-associated protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ccae043c90ed36f67fcd7e246796ad75de087db4ac9af9df3c97edaadc9d96c2", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSAHMSGLEIMDEDQLIKDVLDKFLNCHEQTYDEEFLNTFTHLSQEDHVSKRGVFGTDSSENIFTSAKVTHKNEADDYHLRNKTIFLRTSSQCLEEQVDNFLDLEDLDMDEEIKPQMSEDLLLLPGEVEQDVSTSIPSCIPFVAQPPTCEVKPKPSVKRMDKQTEEILGDEVQLFSLDEEFDYDNVMLTSKFSPAEIENIKELCKQQKRKDTSPDLEKSCD", "sequence_length": 221, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ccae043c90ed36f67fcd7e246796ad75de087db4ac9af9df3c97edaadc9d96c2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q86VG3.json", "taxon_id": "9606", "uniprot_accession": "Q86VG3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/intraciliary-transport-particle-a-binding-go0120160.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0120160", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/intraciliary-transport-particle-a-binding-go0120160.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/iftap-pf17722.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17722", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/iftap-pf17722.yaml" } ], "pfam_ids": [ "PF17722" ], "protein_name": "Intraflagellar transport-associated protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLAQIPRPEIMDEDQLMKEVLDKFVNCHEQTYEEFLSTFTHLSKEDNVAKWGAHGTDSSENIFSTVKWNHKTESNGRHFRNTSIFLHTSSEHSEEDQIVIDEGHKVGSSFQGDMTRAGKVKVDNFLDLEDVDMEEESKPQMNKDCLLLPGEVEQDISTSVPSYDPSVDLPLTSEVRPKPAVGRTQKQTEEILGDEVQPFFLDEEFDYDNVTLTPKFTAGEIATIQELSKQKRVGSGTNVCELHD", "sequence_length": 244, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "de51a301488049b56ab7a8588e356bc8d67ccc25f06555535bb7dd89df1a9f29", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CQI4.json", "taxon_id": "10090", "uniprot_accession": "Q9CQI4", "uniprot_release": "2026_03" } ], "pfam_id": "PF17722", "short_name": "IFTAP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5568-pf17724.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17724", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5568-pf17724.yaml" } ], "pfam_ids": [ "PF17724" ], "protein_name": "UPF0461 protein C5orf24 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMHPVASSNPAFCGPGKPSCLNEDAMRAADQFDIYSSQQNKYSHTVSHKPMVCQRQDPLNETHLQTAGGRSIEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPPGSIKALSRLADLGYGCGTAAFPYPMIHGRAVHGVEETSSEIKPPNE", "sequence_length": 188, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ddc679296185a75306827dbbae70dad91870d8ae35d0a3c118f70f584d073861", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0II29.json", "taxon_id": "9913", "uniprot_accession": "Q0II29", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5568-pf17724.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17724", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5568-pf17724.yaml" } ], "pfam_ids": [ "PF17724" ], "protein_name": "UPF0461 protein C5orf24", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMHPVASSNPAFCGPGKPSCLNEDAMRAADQFDIYSSQQSKYSHTVNHKPMVCQRQDPLNETHLQTTSGRSIEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPPGSIKALSRLADLGYGCGTAAFPYPMMHGRAVHGVEETSSEVKPPNE", "sequence_length": 188, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c433688a75fdea1305b6d334da1d1c55375442970c94d7a5e97aea1228551f8f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Z6I8.json", "taxon_id": "9606", "uniprot_accession": "Q7Z6I8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5568-pf17724.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17724", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5568-pf17724.yaml" } ], "pfam_ids": [ "PF17724" ], "protein_name": "UPF0461 protein C5orf24 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMHPVAGSNPAFCGPGKPSCLNEDAMRAADQFDLYSSQQNKYSHTVSHKPMVCQRQDPLNETHLQPTSGRNIEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPPGSIKALSRLADLGYGCGTAAFPYPMMHSRVVHGLQETSGEVKPPSE", "sequence_length": 188, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "85b6565419ce73dfbcf1af0c5fdefc9ca32a8996a56ec0619d5a9e0a717ba597", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q80X32.json", "taxon_id": "10090", "uniprot_accession": "Q80X32", "uniprot_release": "2026_03" } ], "pfam_id": "PF17724", "short_name": "DUF5568", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5569-pf17729.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17729", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5569-pf17729.yaml" } ], "pfam_ids": [ "PF17729" ], "protein_name": "Uncharacterized protein C10orf62", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLWVQRKRRRKETSECPSDKDKSPESHKAKNESWIKSHFSRLSEEKLALDNNASASGNATQTESGSEEVSSTVHIETFTTRHGEVGSALHRESFTSRQKTSGPSVIQEIHQESGKAPSTDEATWAAVAACTKEIDTQGRHLAHSMLQRAIAYQHSGHLESKDINQEELRALEEVEMKLQKNFLTQRENTIAGANHTHTFYGHSHHSHHGHPSHQSHSLPNRRH", "sequence_length": 223, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6ba575d6f3469a0a79cb03dcd6f978beff33bab913be8c602ea62936c2bfbc3c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T681.json", "taxon_id": "9606", "uniprot_accession": "Q5T681", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5569-pf17729.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17729", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5569-pf17729.yaml" } ], "pfam_ids": [ "PF17729" ], "protein_name": "Uncharacterized protein C10orf62 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLWAQRKKRKATTETTEDKPAESHRPNDSWIKSHFSRLSEEKLPAYRRVSSCGYSPEGKHGEANTTLHVDTVTTKHGEGGVALHRDSFASKQKISGTSVSKEMQRESGKSPSMENDTWAAVAACTKEIDAKGHHVANSVLQRSPEYHRTGHAESRNISPEDLKALEEVELKLKGNFLTHRETVVAGANQAHTVYNQSHHGNQSHQNHNTYPCHQNNQSRSVHYQGHHPSHLSHQGYPSYSSHQNHPGHPSQQGHSSHSNQQGHLGLSSQQGHPSQSSHQSHQGQPGHPNHQSHSLVNRRNQIYDS", "sequence_length": 305, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e6b6df94f6945d9d33b0f2e62afb3c3db531b1b4c66f1e0695fa918e58b69d10", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6AYN3.json", "taxon_id": "10116", "uniprot_accession": "Q6AYN3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5569-pf17729.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17729", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5569-pf17729.yaml" } ], "pfam_ids": [ "PF17729" ], "protein_name": "Uncharacterized protein C10orf62 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLWAHRKKRKAATETTEDKPLESHRANDSWIKSHFSRLSEERLPTYRYVSNNGHSPESRHGEVNTTLHVDTLTTKHGERGAALHRDSFASKQKISGSSMTKEMQRESGKSPSMEDDTWAAVAACTKEIDAKGHRVANSMLQRSTTHRRKGHAESRNISPEELKALEEVEIKLKGNFLTHHETGVAGANQSHTVYSQSRHSNQSHHSYPSHQSNQSHPVYSSYQGHHPSHLSPQSYPSYSSHQSHPGHSNHQGHSGLSSHQTHLGHSNHQGHPGHSSHQSHQGQPGHPSHQSHNLPNRRNPIYGS", "sequence_length": 304, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f27314562dbebdef91319df9b7be20e8c68cb33eebc7735ae9d4f1b0646176f5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q80Y39.json", "taxon_id": "10090", "uniprot_accession": "Q80Y39", "uniprot_release": "2026_03" } ], "pfam_id": "PF17729", "short_name": "DUF5569", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5570-pf17731.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17731", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5570-pf17731.yaml" } ], "pfam_ids": [ "PF17731" ], "protein_name": "Uncharacterized protein KCNJ5-AS1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLTRLVLSAHLSSTTSPPWTHAAISWELDNVLMPSPRIWPQVTPTGRSASVRSEGNTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSATNITCQSSGQQRQAARQEEENSICKAHDSREGRLGYPLSAHQPGSGGPN", "sequence_length": 145, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d3c9731ba0edd6070b76dd99cf71d3b39e54a49122dbcec716f5b59dd56caac1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TAV5.json", "taxon_id": "9606", "uniprot_accession": "Q8TAV5", "uniprot_release": "2026_03" } ], "pfam_id": "PF17731", "short_name": "DUF5570", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5571-pf17732.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17732", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5571-pf17732.yaml" } ], "pfam_ids": [ "PF15663", "PF17732" ], "protein_name": "Protein ZC3H11D", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEMQQNCSISCFWETQPLGCVKISCIFYHSKPRNINGLFLPPSSNIILQKETQEGIPPPTQSQEPLKPQENISRPIHHPLVLKTNFEEEEEEEGEQNDASSLWTKTPEEIEEKRAIKEMCYKSGEYYRVHTPSDISSSKSIASIVEKEIEKSLESGSELQEGDGLTVPTKFSLFERQGEIKASLDRKPRTDIAAFENGGGDCYVPQRIIFLGVDENEVLTEEKESTISKCSNAKVNDVHPVMKPHFKGVKKRKWIYDEPKNFPEPGMQRVQASNPKNKMSYHRNNKNKNSENASYIHVQRDAVRTVSLNAPPHGRPPHGSYNKADVNKEPKFKLCSDKYMSTSYNGSAWQKRIPFSKTYSKNEKIYTEPRRNGSK", "sequence_length": 375, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a3d72c4da8dd7c8f757a3fbd923a4983ef93dbe6619066f1fd0fb218090496db", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q32KY7.json", "taxon_id": "9913", "uniprot_accession": "Q32KY7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Macaca fascicularis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5571-pf17732.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17732", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5571-pf17732.yaml" } ], "pfam_ids": [ "PF15663", "PF17732" ], "protein_name": "Protein ZC3H11D", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEMQQNCSISCFWETQPLGCVKISCIFYHSKPRNINGLFLPPSSNITLQKESQEGIPLQTQSQEPLKPQENISRPIHHPLVLKTNFEEEEEVDEQNDASSLWTKTPEEIEEKRAIKEMCYKSGEYYRFHTPPDILSSKSMAPTAEKELEKPLENGSELQEGDSLTVPTKLSQYERQGEIKTSLHGKPKTDIAAFENGGGDCYVPQRVIFLGVDESEALTEEKEITISKCSNTKDNKDSPHPKRSLTTRLVPTTHVLNATENISMKCREDPSSMNDVQPVKKPHFKGVKKRKWIYDEPKNFPDSGMRRAVQTPSPQNKMSYHRNNKNRNAENASYIHVQRDAVRTVALNAPPHSRPMHGSYNKVHVNKEPKPNLSPDKYMSTSYNDSAWRKRIPFSKTYSKSGKIYPEPRRNGSK", "sequence_length": 414, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "71384db65348cd82811acbd5c8455dbc0f3b76c568f886f39209c3372dd60e22", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q4R731.json", "taxon_id": "9541", "uniprot_accession": "Q4R731", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zinc-finger-ccch-domain-ipr041686.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041686", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zinc-finger-ccch-domain-ipr041686.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5571-pf17732.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17732", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5571-pf17732.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/zf-ccch-3-pf15663.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15663", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/zf-ccch-3-pf15663.yaml" } ], "pfam_ids": [ "PF15663", "PF17732" ], "protein_name": "Protein ZC3H11D", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEMQQNCSISCFWETQPLGCVKISCIFYHSKPRNINGLFLPPSSNITLQKEIQEGIPLQSQSQEPLKPQENISRPIHHPLVLKTNFEEEEEVDEQNDASSLWTKTPEEIEEKRAIKEMCYKSGEYYRFHTPPDILSSKSMTPTAEKQLEKPLENGSELQEGDSLTVPTKLSQYERQGEIKTSLHGKPKTDIAAFENGGGDCYVPQRVIFLGVDESEALTEEKEITISKCSNTKDNKDSPHPKHSLTTRLVPTTHVLNATENISMKCREDPSSMNDVQPVKKPHFKGVKKRKWIYDEPQNFPNSGMQRAVQAPRPQNKMSYHRNNKNRNAENASYIHVQRDAVRTVALNAPSRSRPTHGSYNKVHANREPKPNLSPDKYTSTSYNDSAWRKRIPFSKTYSKSEKIYPEPRRNGSK", "sequence_length": 414, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "36eb9c6ef5e1ab3322bdd9c894b74fa055e672fffdbe415aa11228ea31a88ad2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NA57.json", "taxon_id": "9606", "uniprot_accession": "Q8NA57", "uniprot_release": "2026_03" } ], "pfam_id": "PF17732", "short_name": "DUF5571", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/peroxisomal-membrane-protein-pex14-like-kpwe-domain-ipr040554.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040554", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/peroxisomal-membrane-protein-pex14-like-kpwe-domain-ipr040554.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kpwe-dom-pf17733.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17733", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kpwe-dom-pf17733.yaml" } ], "pfam_ids": [ "PF17733" ], "protein_name": "Peroxisomal biogenesis factor 39", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAGGELSYEELLDHILNNKPIPNIVEVPNVTLDEGLASTPSLRPRPRPWEGQLQHQSHQGSLDKPNISLDIDQESLEGMTSLTRLSECYDIQSKLQINDSDNDNDDNNNDNNKGDGNDDDNNTVTANPTAR", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "680cb18e0a128858cd454df44183117cdb5b9a180c30074a484a5c99eb8049b5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P47087.json", "taxon_id": "559292", "uniprot_accession": "P47087", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/peroxisomal-membrane-protein-pex14-like-kpwe-domain-ipr040554.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040554", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/peroxisomal-membrane-protein-pex14-like-kpwe-domain-ipr040554.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kpwe-dom-pf17733.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17733", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kpwe-dom-pf17733.yaml" } ], "pfam_ids": [ "PF17733" ], "protein_name": "Peroxisomal biogenesis factor 39", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERPRSPQCSAPASASASVTLAQLLQLVQQGQELPGLEKRHIAAIHGEPTASRLPRRPKPWEAAALAESLPPPTLRIGTAPAEPGLVEAATAPSSWHTVGP", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5302b3cad224f2c6a451d3c2c5d4d0885786aa09d8c5153c1fb6fc1ea0ea067a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5I0X4.json", "taxon_id": "9606", "uniprot_accession": "Q5I0X4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/peroxisomal-membrane-protein-pex14-like-kpwe-domain-ipr040554.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040554", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/peroxisomal-membrane-protein-pex14-like-kpwe-domain-ipr040554.yaml" } ], "pfam_ids": [ "PF17733" ], "protein_name": "Peroxisomal biogenesis factor 39", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSWWQDMDQRGGVSSPSGALASAEPAPASVTLAELLHLVQKGQEVPGLEKRHITATHGEPTASLLPRRPKPWEDAGSAASPCTIALDTRTQPPTIEERSRGSPAAQLDGGPRVS", "sequence_length": 114, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6d40bf47fbea24947099d96b36dbe679e41525bb7ba459109a38cf442505116f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D727.json", "taxon_id": "10090", "uniprot_accession": "Q9D727", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-import-into-peroxisome-matrix-docking-go0016560.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0016560", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-import-into-peroxisome-matrix-docking-go0016560.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-targeting-to-peroxisome-go0006625.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0006625", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-targeting-to-peroxisome-go0006625.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/peroxisomal-membrane-protein-pex14-central-plants-ipr054154.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR054154", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/peroxisomal-membrane-protein-pex14-central-plants-ipr054154.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/peroxisome-membrane-anchor-protein-pex14-pex33-n-terminal-ipr006785.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/kpwe-dom-pf17733.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17733", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/kpwe-dom-pf17733.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pex14-like-2nd-pf23020.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23020", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pex14-like-2nd-pf23020.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pex14-n-pf04695.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04695", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pex14-n-pf04695.yaml" } ], "pfam_ids": [ "PF04695", "PF17733", "PF23020" ], "protein_name": "Peroxisomal membrane protein PEX14", "registry_status": "NOT_IN_REGISTRY", "reviewed": 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"MLLALGLTLVLYASLQAEENSFTINSIHMESLPSWEVMNGQQLTLECLVDISTTSKSRSQHRVLFYKDDAMVYNVTSREHTESYVIPQARVFHSGKYKCTVMLNNKEKTTIEYEVKVHGVSKPKVTLDKKEVTEGGVVTVNCSLQEEKPPIFFKIEKLEVGTKFVKRRIDKTSNENFVLMEFPIEAQDHVLVFRCQAGILSGFKLQESEPIRSEYVTVQESFSTPKFEIKPPGMIIEGDQLHIRCIVQVTHLVQEFTEIIIQKDKAIVATSKQSSEAVYSVMAMVEYSGHYTCKVESNRISKASSIMVNITELFPKPKLEFSSSRLDQGELLDLSCSVSGTPVANFTIQKEETVLSQYQNFSKIAEESDSGEYSCTAGIGKVVKRSGLVPIQVCEMLSKPSIFHDAKSEIIKGHAIGISCQSENGTAPITYHLMKAKSDFQTLEVTSNDPATFTDKPTRDMEYQCRADNCHSHPAVFSEILRVRVIAPVDEVVISILSSNEVQSGSEMVLRCSVKEGTSPITFQFYKEKEDRPFHQAVVNDTQAFWHNKQASKKQEGQYYCTASNRASSMRTSPRSSTLAVRVFLAPWKKGLIAVVVIGVVIATLIVAAKCYFLRKAKAKQKPVEMSRPAAPLLNSNSEKISEPSVEANSHYGYDDVSGNDAVKPINQNKDPQNMDVEYTEVEVSSLEPHQALGTRATETVYSEIRKVDPNLMENRYSRTEGSLNGT", "sequence_length": 727, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "92d9f5efd4b98f87b747a06b330413c180cde3b66ef67ec9b81020c8a57b0452", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q08481.json", "taxon_id": "10090", "uniprot_accession": "Q08481", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mature-b-cell-differentiation-involved-in-immune-response-go0002313.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0002313", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mature-b-cell-differentiation-involved-in-immune-response-go0002313.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-immunoglobulin-production-in-mucosal-tissue-go2000558.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000558", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-immunoglobulin-production-in-mucosal-tissue-go2000558.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/il-40-like-ig-domain-ipr040878.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040878", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/il-40-like-ig-domain-ipr040878.yaml" } ], "pfam_ids": [ "PF17736" ], "protein_name": "Protein IL-40", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGLPGLFCLAVLAASSFSKAREEEITPVVSIAYKVLEVFPKGRWVLITCCAPQPPPPITYSLCGTKNIKVAKKVVKTHEPASFNLNVTLKSSPDLLTYFCWASSTSGAHVDSARLQMHWELWSKPVSELRANFTLQDRGAGPRVEMICQASSGSPPITNSLIGKDGQVHLQQRPCHRQPANFSFLPSQTSDWFWCQAANNANVQHSALTVVPPGGDQKMEDWQGPLESPILALPLYRSTRRLSEEEFGGFRIGNGEVRGRKAAAM", "sequence_length": 265, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8a8ead5c7df718be24f3a3fd76b2030d0f47bba820d1e2dfd852d3f0e9d5adf1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6UX52.json", "taxon_id": "9606", "uniprot_accession": "Q6UX52", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/il-40-like-ig-domain-ipr040878.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040878", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/il-40-like-ig-domain-ipr040878.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-c17orf99-pf17736.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17736", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-c17orf99-pf17736.yaml" } ], "pfam_ids": [ "PF13895", "PF17736" ], "protein_name": "Allergin-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWSHLNRLLFWSIFSSVTCRKAVLDCEAMKTNEFPSPCLDSKTKVVMKGQNVSMFCSHKNKSLQITYSLFRRKTHLGTQDGKGEPAIFNLSITEAHESGPYKCKAQVTSCSKYSRDFSFTIVDPVTSPVLNIMVIQTETDRHITLHCLSVNGSLPINYTFFENHVAISPAISKYDREPAEFNLTKKNPGEEEEYRCEAKNRLPNYATYSHPVTMPSTGGDSCPFCLKLLLPGLLLLLVVIILILAFWVLPKYKTRKAMRNNVPRDRGDTAMEVGIYANILEKQAKEESVPEVGSRPCVSTAQDEAKHSQELQYATPVFQEVAPREQEACDSYKSGYVYSELNF", "sequence_length": 343, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3565239b82271fca79aa5ddf8aec4484d3c1982ffea75fffa5b72f632c632efc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Z6M3.json", "taxon_id": "9606", "uniprot_accession": "Q7Z6M3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mature-b-cell-differentiation-involved-in-immune-response-go0002313.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0002313", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mature-b-cell-differentiation-involved-in-immune-response-go0002313.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/positive-regulation-of-immunoglobulin-production-in-mucosal-tissue-go2000558.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000558", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/positive-regulation-of-immunoglobulin-production-in-mucosal-tissue-go2000558.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/il-40-like-ig-domain-ipr040878.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040878", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/il-40-like-ig-domain-ipr040878.yaml" } ], "pfam_ids": [ "PF17736" ], "protein_name": "Protein IL-40", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALLQLLLFAMLAACGFSEEQTEGITIAYKVLEVYPQSRRVLITCDAPEASQPITYSLLASRGILVAKKVVHDSVPASFNINITIKSSPDLLTYSCQATSNSGTYGPSSRLQMYQELWAKPVSQLQADFVLRHGDSGPTVELSCLASSGSPPITYRLVGNGGRVLAQQRPLHGKPANFSLPLSQTTGWFQCEAENDVGVDSSARIPLPRAEARAKLVTTLAGELPLTPTCILAGSLVSIAVIASRMLSSTGL", "sequence_length": 252, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a2dcd89e09ec0a97771f0574f32cf3a75ffa6239aab1e8b77d9175b345bcc9ef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CX63.json", "taxon_id": "10090", "uniprot_accession": "Q9CX63", "uniprot_release": "2026_03" } ], "pfam_id": "PF17736", "short_name": "Ig_C17orf99", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c19orf38-ig-domain-ipr041066.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041066", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c19orf38-ig-domain-ipr041066.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-c19orf38-pf17737.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17737", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-c19orf38-pf17737.yaml" } ], "pfam_ids": [ "PF17737" ], "protein_name": "Protein HIDE1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPWTILLFAAGSLAIPAPSIRLVPPYPSSQEDPIHIACMAPGNFPGANFTLYRGGQVVQLLQAPTDQRGVTFNLSGGSSKAPGGPFHCQYGVLGELNQSQLSDLSEPVNVSFPVPTWILVLSLSLAGALFLLAGLVAVALVVRKVKLRNLQKKRDRESCWAQINFDSTDMSFDNSLFTVSAKTMPEEDPATLDDHSGTTATPSNSRTRKRPTSTSSSPETPEFSTFRACQ", "sequence_length": 230, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c349e604085969b32fb89a38503c9d9bb3b21da10f0f029b5e24b52b55a1a7b5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A8MVS5.json", "taxon_id": "9606", "uniprot_accession": "A8MVS5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c19orf38-ig-domain-ipr041066.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041066", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c19orf38-ig-domain-ipr041066.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-c19orf38-pf17737.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17737", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-c19orf38-pf17737.yaml" } ], "pfam_ids": [ "PF17737" ], "protein_name": "Protein HIDE1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPWTILLFASGSLAIPAPSISLVPPYPSSHEDPIYISCTAPGDILGANFTLFRGGEVVQLLQAPSDRPDVTFNVTGGGSGGGGEAAGGNFCCQYGVMGEHSQPQLSDFSQQVQVSFPVPTWILALSLSLAGAVLFSGLVAITVLVRKAKAKNLQKQRERESCWAQINFTNTDMSFDNSLFAISTKMTQEDSVATLDSGPRKRPTSASSSPEPPEFSTFRACQ", "sequence_length": 222, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "df681591a43d3787f97882937d81852cf596847b8d7d84dfc607204292e519ed", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q75VT8.json", "taxon_id": "10090", "uniprot_accession": "Q75VT8", "uniprot_release": "2026_03" } ], "pfam_id": "PF17737", "short_name": "Ig_C19orf38", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5575-c-terminal-domain-ipr049218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5575-c-terminal-domain-ipr049218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5575-n-terminal-domain-ipr049217.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049217", "section": "canonical_examples", "url": 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"qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20784", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-c-pf20784.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5575-n-pf20783.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20783", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-n-pf20783.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5575-pf17738.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-pf17738.yaml" } ], "pfam_ids": [ "PF17738", "PF20783", "PF20784" ], "protein_name": "Uncharacterized protein ZSWIM9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELTEPLPSAAVQKEEQELLDRTFFSWAEFSRFFDKWCQQRLVVFSVKSSTRVARSPWANTPPLYRLIHVLKYSYVLLVCKDVRMPNKSTAWPPQPSCPAFITVKLSPLRDRLVVTECQLTHSHPACPREFAYHFRPGHLLANSCLPVRITNQISKQFVAPADVRRLLTHCKGPDHGVLDALQVLEGLFRTDPEAKVKLVFVEDQAMVETVFLLTSRTRALLRRFPRILLVDRLPGLQGTLDLMAVLCVDSAGRARQAACCVARPGTPSLLRFMLVSLLQSAPDVKGRVRCLTAGPEVAGQLRAVRQLLPCARVQICRAQGLETLFSKAQELGGASQEDPDLWPLLCRLADSKSYTAYSEALAELRSQAPTAFIRYFEHNWAPRHDMWVRFRAYEATRDLDACALVRSHRRRLLRRLSPSHSVAQCLRDLVAMQWADATGEAALRGC", "sequence_length": 447, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "68824feb5a1f165301f806fb6ba817746c0af177e37f2dda6b1f7e0b2ad575a7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6DI92.json", "taxon_id": "10090", "uniprot_accession": "Q6DI92", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5575-c-terminal-domain-ipr049218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5575-c-terminal-domain-ipr049218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5575-n-terminal-domain-ipr049217.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5575-n-terminal-domain-ipr049217.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zswim9-central-rnaseh-like-domain-ipr048315.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048315", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zswim9-central-rnaseh-like-domain-ipr048315.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5575-c-pf20784.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20784", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-c-pf20784.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5575-n-pf20783.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20783", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-n-pf20783.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5575-pf17738.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-pf17738.yaml" } ], "pfam_ids": [ "PF17738", "PF20783", "PF20784" ], "protein_name": "Uncharacterized protein ZSWIM9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERPEPPPGTAAGQEEQELRERAFFSWAEFSRFFDAWCQQRLALFFVKSSMHLARCRWASAPPLYTLIDVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLRDRLVVTECQLTHSHPACPLEFAYYFRPGHLLANACLPVRTTNKISKQFVAPADVRRLLSYCKGRDHGVLDALHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLLVDRLPGLQGALDLLAVLCVDGSGRARQAACCVARPGTPSLLRFALASLLQSAPDVKGRVRCLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFSKAQELGGAGREDPGLWSRLCRLAGASSPAAYDEALAELHAHGPAAFVDYFERNWEPRRDMWVRFRAFEAARDLDACALVRGHRRRLLRRLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVRGLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIRDWRGGRLENQKPRGLEGGVLRGSKLEKGHLRGPEIRDWRGPQLEGEKDWGLEGYVWRGSQLEDQALRGLEGYTWRVAQLEDRRSTTDLRGTQFDYERGKGESTEDR", "sequence_length": 627, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5faa80147db0e6b8567804ee66d7d1ede11fe03aa04ec97166de0d53fd62ca06", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q86XI8.json", "taxon_id": "9606", "uniprot_accession": "Q86XI8", "uniprot_release": "2026_03" } ], "pfam_id": "PF17738", "short_name": "DUF5575", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5576-pf17739.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17739", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5576-pf17739.yaml" } ], "pfam_ids": [ "PF17739" ], "protein_name": "Putative uncharacterized protein C1orf220", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIPVRGLWYCYLQVKKVRLREAERLGPKSQCPAECGAASWISWVLQHQQLLASEWATKDGRGTWGSKPSCTVPALSATSQLLQLGRLNSDLQFVRQRAKKSVSSPSLLQFWCCLSRLSFHALNQKINSTNINIT", "sequence_length": 134, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d81e281dc80cd65ea67a7e870cc952b0161063c9aef79f5838e401a1d39bfb6d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T0J3.json", "taxon_id": "9606", "uniprot_accession": "Q5T0J3", "uniprot_release": "2026_03" } ], "pfam_id": "PF17739", "short_name": "DUF5576", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5577-pf17740.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17740", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5577-pf17740.yaml" } ], "pfam_ids": [ "PF17740", "PF18017" ], "protein_name": "Uncharacterized protein C19orf47 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFRIRESLLLNLRKVPGSRVKARETMVSVTMATSEWIQFFKEAGIPPGPAVNYAVMFVDNRIQKSMLLDLNKEIMNELGVTVVGDIIAILKHAKVVHRQDMCKAATASVPCTPSPLQGELRRGASSAASRMIANSLNHDSPPHTPARRSDNSTSKISVTVSNKVAVKNAKAAALAHREEESLVVPTKRRRVTAEMEGKYIIHMPKGTTPRTRKILEQQQAAKGLHRTSVFDRLGAETKADTTTGTKPTGVFSRLGATPEMDEELAWDSDNDSSSSSVLQYAGVLKKLGRGPTKASPQPALTVKAKATSSATTLASTPKLRRLALPSRPGPEKKPESLPKVSILKRLGKAAVVSEAQDSQVTSTKSPTVRCIVPDPPAPLASQRPPRRRWRRTCKDC", "sequence_length": 397, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e7d1046127d448f9e0fae674ee7a168d8cec63459d7088bc30897452f5fdd190", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0JPQ7.json", "taxon_id": "10116", "uniprot_accession": "A0JPQ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/sam-domain-of-cs047-subfamily-sam-sterile-alpha-motif-domain-of-cs047--cd09531.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09531", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/sam-domain-of-cs047-subfamily-sam-sterile-alpha-motif-domain-of-cs047--cd09531.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c19orf47-sam-domain-ipr040772.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040772", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c19orf47-sam-domain-ipr040772.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5577-ipr041477.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041477", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5577-ipr041477.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sam-4-pf18017.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18017", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sam-4-pf18017.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5577-pf17740.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17740", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5577-pf17740.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8N9M1", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF17740", "PF18017" ], "protein_name": "Uncharacterized protein C19orf47", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "a603b99946e3bf62d3d4a70283ab261d4930b6cd376f538fef5fc32beb75914c", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVMAALSLVAACWGRAAADESVQLPAAPGSSVRARETMVSVTMATSEWIQFFKEAGIPPGPAVNYAVMFVDNRIQKSMLLDLNKEIMNELGVTVVGDIIAILKHAKVVHRQDMCKAATESVPCSPSPLAGEIRRGTSAASRMITNSLNHDSPPSTPPRRPDTSTSKISVTVSNKMAAKSAKATAALARREEESLAVPAKRRRVTAEMEGKYVINMPKGTTPRTRKILEQQQAAKGLHRTSVFDRLGAETKADTTTGSKPTGVFSRLGATPETDEDLAWDSDNDSSSSVLQYAGVLKKLGRGPAKASPQPALTVKAKATSSATTAAAPTLRRLALSSRSGLERKPESLSKVSIIKRLGAAALVPEAQDSQVTSTKSKSSAEVKVTIKRTLVGPRGSSSSEGLGAQMDHAGTVSVFKRLGRRTF", "sequence_length": 422, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "a603b99946e3bf62d3d4a70283ab261d4930b6cd376f538fef5fc32beb75914c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N9M1.json", "taxon_id": "9606", "uniprot_accession": "Q8N9M1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/sam-domain-of-cs047-subfamily-sam-sterile-alpha-motif-domain-of-cs047--cd09531.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09531", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/sam-domain-of-cs047-subfamily-sam-sterile-alpha-motif-domain-of-cs047--cd09531.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c19orf47-sam-domain-ipr040772.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040772", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c19orf47-sam-domain-ipr040772.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5577-ipr041477.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041477", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5577-ipr041477.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/sam-4-pf18017.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18017", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/sam-4-pf18017.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5577-pf17740.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17740", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5577-pf17740.yaml" } ], "pfam_ids": [ "PF17740", "PF18017" ], "protein_name": "Uncharacterized protein C19orf47 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFRIGKNLLFNLRKAPGSRVKARKTMVSVTMATSEWIQFFKEAGIPPGPAVNYAVMFVDNRIQKSMLLDLNKEIMNELGVTVVGDIIAILKHAKVVHRQDMCKAATESVPCNPSPLQGELRRGASSAASRMIANSLNHDSPPHTPTRRSDNSTSKISVTVSNKMAAKSAKAAALAHREEESLVVPTKRRRVTAEMEGKYIIHMPKGTTPRTRKILEQQQAAKGLHRTSVFDRLGAESKADTTTGTKPTGVFSRLGATPEMDEDLAWDSDNDSSSSSVLQYAGVLKKLGRGPTKASAQPALTVKAKAASSATSTATTPKLRRLALPSRPGLQKKPDSLPKVSILQRLGKAAVVSEAQDSQVTSTKSKSSAEVKFAIKRTLVGPRGSSSSESLGAQMDHAGTVSVFKRLGQRTF", "sequence_length": 413, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0d1e0d457a13fa5c6f1ff053dc1e4b6d2b508f8b29300d8b9f9fe1525f97b94c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R3Y5.json", "taxon_id": "10090", "uniprot_accession": "Q8R3Y5", "uniprot_release": "2026_03" } ], "pfam_id": "PF17740", "short_name": "DUF5577", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5578-pf17741.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17741", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5578-pf17741.yaml" } ], "pfam_ids": [ "PF17741" ], "protein_name": "Armadillo-like helical domain containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSIKEQAAISRLLSFLQDWDNAGKVARSNILNNFIEANQGKTAPELEQEFSQGASLFLVRLTTWLRLTYMTGSPLDKLLRSIGVFLSAVSSNRYLIEFLEVGGVLTLLEILALNKIKEEDKKESIKLLQVIANSGRKYKELICESYGVRSIAEFLAKSKSEETQEEVQVLLDSLIHGNPKYQNQVYKGLIALLPCASPKAQQLALQTLRTAQSIIGTTHPSIVDCVLKVLCTMHLEVQYEAIELIKDLVNYDVCPALLKGLVALLIPSFKETSKLQSQIVSDSSVLELTAHLPLFLQQAAAAKAIGVLARHNTTLAEEMLHLRVIHSLMAAMGNTDHSNSQRQASLTLEYFVQLFPVVEEHVRKTMGEELYKLFLSNAENLYMNIDSIQADILAANKVNVTRVLHLSGLSYSNMSFYFGHPNEDQVAYVTHFRKEDVEEKE", "sequence_length": 442, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "04cf85840219feccdf90b5d8b7825f68233e3927a3ed6fc0a51626d5885c686c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A7MBF6.json", "taxon_id": "9913", "uniprot_accession": "A7MBF6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5578-pf17741.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17741", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5578-pf17741.yaml" } ], "pfam_ids": [ "PF17741" ], "protein_name": "Armadillo-like helical domain containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSIKEQAAISRLLSFLQEWDNAGKVARSHILDKFIETNQGKTAPELEQEFSQGASLFLVRLTTSLRITYMTDSCLEKLLRSIGIFLSAVSSNRYLIEFLEVGGVLTLLEILGLEKIKEEAKKESVKLLQVIANSGRTYKELICESYGVRSIAEFLAKSKSEETQEEVQVLLDSLVHGNPKYQNQVYKGLIALLPCESPKAQQLSLQTLRTAQPIIGTTHPSIVDCVLKVLGTMHLEVQYEAIELIKDLVGYDVRQALLKGLVALLIPSVKEISKLQAKILSDPSVLQLTPSLPMFLQQAAAAKAIGVLARNDMSIAEELLYLRVVRGLMAAMGNTDHSNSQRLASLTLECFVQMFPLVAEHVRKCMGEELYQLFLSNAEDLYMKIDSIQADILAANTVNVTKALCLHGSSYSMNTLYGSRDSAQMAYLTHFEEDVESKE", "sequence_length": 440, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3cf4f506f622fefbb5fd13eb077c70a52f948e571d6c612c9a59c961a00e001a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6PIY5.json", "taxon_id": "9606", "uniprot_accession": "Q6PIY5", "uniprot_release": "2026_03" } ], "pfam_id": "PF17741", "short_name": "DUF5578", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fndc10-pf17742.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fndc10-pf17742.yaml" } ], "pfam_ids": [ "PF17742" ], "protein_name": "Fibronectin type III domain-containing protein 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRAPPLLLLLAACAPPSGAAVDPTPPGWEPAPDAPWCPYKVLSEGPETGGGRLCFRSPVRGFRCQTPGCETLASAGGSLRAHVLRNRSVLLQWRLAPAEARRVRVFALNCSWRGTYTRFPCDRVLLGASCRDYLLPDVHDSVRYRLCLQQLPLRAEVAVVPPELAECVEFTAEPAAMQEIVVAMTAVGGSICVMLVVICLLVAYITENLMHPTFRRPSLRRQP", "sequence_length": 223, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "70b95d7e20d860e7e7d6c53c61b48217880b0170cf778c984af2b31f6459b083", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2A9Q0.json", "taxon_id": "10090", "uniprot_accession": "A2A9Q0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fndc10-pf17742.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fndc10-pf17742.yaml" } ], "pfam_ids": [ "PF17742" ], "protein_name": "Fibronectin type III domain-containing protein 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRAPPLLLLLAACAPPSGAAVDPTPPGWEPAPDAPWCPYKVLSEGPEAGGGRLCFRSPVRGFRCQTPGCVTLASAGGSLRAHVLRNRSVLLQWRLAPAEARRVRVFALNCSWRGTYTRFPCDRVLLGASCRDYLLPDVHDSVRYRLCLQPLPLPLRAELAAAPPELAECVEFTAEPAAMQEIVVAMTAVGGSICVMLVVICLLVAYITENLMHPTFRRPSLRRQP", "sequence_length": 225, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0e390341b6137414e8ae83212d63150bc5e907aec61a0beeb73feee66d751c90", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D4A2Q0.json", "taxon_id": "10116", "uniprot_accession": "D4A2Q0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fndc10-pf17742.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fndc10-pf17742.yaml" } ], "pfam_ids": [ "PF17742" ], "protein_name": "Fibronectin type III domain-containing protein 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRAPPLLLLLAACAPPPCAAAAPTPPGWEPTPDAPWCPYKVLPEGPEAGGGRLCFRSPARGFRCQAPGCVLHAPAGRSLRASVLRNRSVLLQWRLAPAAARRVRAFALNCSWRGAYTRFPCERVLLGASCRDYLLPDVHDSVLYRLCLQPLPLRAGPAAAAPETPEPAECVEFTAEPAGMQDIVVAMTAVGGSICVMLVVICLLVAYITENLMRPALARPGLRRHP", "sequence_length": 226, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7167efba67d2d64ade0347c19606d3fa612aae48da4a3603188a43755c6ccecc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/F2Z333.json", "taxon_id": "9606", "uniprot_accession": "F2Z333", "uniprot_release": "2026_03" } ], "pfam_id": "PF17742", "short_name": "Fndc10", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5580-c-terminal-domain-ipr049247.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049247", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5580-c-terminal-domain-ipr049247.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5580-middle-domain-ipr049246.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049246", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5580-middle-domain-ipr049246.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5580-n-terminal-domain-ipr048316.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048316", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5580-n-terminal-domain-ipr048316.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5580-c-pf20743.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20743", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5580-c-pf20743.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5580-m-pf20742.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5580-m-pf20742.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5580-pf17743.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17743", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5580-pf17743.yaml" } ], "pfam_ids": [ "PF17743", "PF20742", "PF20743" ], "protein_name": "Uncharacterized protein C1orf87 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSPWKTSQSSVPMPEMIVKIVGSKHFRYFIEKPMNKQNEKLKTEPQTSLQKPRNDYSRRVSRDLPGPTDSSEQQITANPAEKEESKHQRSSLKPESNQKFLTRVFSNRFLDGRISYEANVHCSSVPTGDQSLSYMHSLPRRKSVGWCLEHTAKDSSGQAEEIVQRPSVMTREDSFLTTLVRRELNSRPLSSNLLDKLQKELKTLDPISSGFLHQSQLSCLFLRHKVPLPLLTVKLLCQRFSRRCSPEMVNYGEVLCFLKEATKDNLQQNGTAGYSNSRKTSSPSYHKQSIPPQDSSLLSEVNKSLLEILKMALRPCQGKLSIDCLNMSFRKEDHSFSGCLPLPKVISICSKHGLYVTMTLLETLLHHQELGYRGEIKWKNFVKWLNRASADLSCDMPAGKNKKETQGDLVDIPERPQRKTEHVKTPEENLQTKNPTTMTSAPEDPVTFFKNRPVSQPVEHLAVKKDGQSELWIDRFRKLENALYLCDLSNTGVLERERARRLIHNYNLIYSLSLSPRRINQALQRYRSGENIILEPALQYLKEL", "sequence_length": 545, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "990a4774b8a4f6770116c514a7669afcd21952e1346c716ad567023bc0151400", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2AGB2.json", "taxon_id": "10090", "uniprot_accession": "A2AGB2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5580-c-terminal-domain-ipr049247.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049247", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5580-c-terminal-domain-ipr049247.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5580-middle-domain-ipr049246.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049246", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5580-middle-domain-ipr049246.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5580-n-terminal-domain-ipr048316.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048316", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5580-n-terminal-domain-ipr048316.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5580-c-pf20743.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20743", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5580-c-pf20743.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5580-m-pf20742.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5580-m-pf20742.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5580-pf17743.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17743", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5580-pf17743.yaml" } ], "pfam_ids": [ "PF17743", "PF20742", "PF20743" ], "protein_name": "Uncharacterized protein C1orf87", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSAWKTPRGSDAMPEIMVKIIGSKHFQYLVEKPKIKENDSLKTETQTMHQKPMTDNARQMSRDTPVPINFTDQQTTDNPDDVKEKKHPENNQKSENNQKLLTGANSSRFLDGNIPSQANVHCSSVPTGDQSLSYVHGIPRRKLRDWSLEQMVRGSSDQPEDIGQSPSGTTNEDAFLLALVRRELKSRPLSSNLLEKLQKELKILDPISSGFLLQSQLSRLFLKHEVPLQLPTVKILCQRFSKRGSPEMVNYEKLLWFLNSAASDYPQQNKAAADLRKTESHGTHSQSTPPQHSSSQPEVNRSLLEILKMALRTTNGRLNIDNLNLSFRKEDRSFSGCLPLPKVRAICGKHGLYLTLSLLETLLNHQDLGYQNEIKWQNFVEMLTRASSDLLSDLPTGKNEKKAPAPPMEPEVPEMSQSKTEHMKTPEEELQPESSPAETSACKDPLKPLKIRPVSQPFVNPAVKNKAEECETWIDRFRKLENALYLCDLSNTGVLEKERARRLIHNYNLIYNLSLSPQKIDQALRRFRSGENMLLEPALRYLKEL", "sequence_length": 546, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "299babdcc067b54bc831bfd08aa4a25fa5aea24e0cb4d05790f4722e273a74f8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N0U7.json", "taxon_id": "9606", "uniprot_accession": "Q8N0U7", "uniprot_release": "2026_03" } ], "pfam_id": "PF17743", "short_name": "DUF5580", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTEGGKTGAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ", "sequence_length": 152, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "45c69a28e2c0f644959cb6819e2725237c240c4f2ccaf436bf6ad01b47fc2335", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P37052.json", "taxon_id": "83333", "uniprot_accession": "P37052", "uniprot_release": "2026_03" } ], "pfam_id": "PF17775", "short_name": "YchJ_M-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/dimerization-docking-d-d-domain-found-in-testis-specific-expressed-pro-cd22975.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22975", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/dimerization-docking-d-d-domain-found-in-testis-specific-expressed-pro-cd22975.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tex55-dimerization-docking-domain-ipr048377.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048377", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tex55-dimerization-docking-domain-ipr048377.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tex55-pf17819.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tex55-pf17819.yaml" } ], "pfam_ids": [ "PF17819" ], "protein_name": "Testis-specific expressed protein 55", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDEPPDESLNHENTTRAPDNEKNNIEGAGQALHRGSEHAGVGSSEPTGDKVSGQANAGSRQTGRRTSEEAEQRSSQPTEHRLPGHAERRASQQAERRLSERRTSQPPNQQLPSHSERKTSGKIDGQESLLSEQTDQETSEFDDLIPSASTDYLSARSQQQEYNQHGYWTEDSSDPHRLSEDLEKDYTRVKHITEKQAGYRSYYKTLAHIESRTLTDTNDYRETGQRLQPCTFEDSEAELPSKVSTTEETESATTIQAYNTQDTELTTSTSHEKLPSITTKVYYSSSPEKIQTTEYTSDTTPVFDQGRSSQRSSQSSRWRFPPIVFEDPYHVALRYVEKHNILHIFQQITENLVYERPDDPLYFMLDQVQNMIKHRDERQSD", "sequence_length": 381, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f2dc3b6737b8b4b035cf043b648f16d95a4043336a5afadc2b689999f96ce913", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A6X8Z9.json", "taxon_id": "10090", "uniprot_accession": "A6X8Z9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/dimerization-docking-d-d-domain-found-in-testis-specific-expressed-pro-cd22975.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22975", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/dimerization-docking-d-d-domain-found-in-testis-specific-expressed-pro-cd22975.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tex55-dimerization-docking-domain-ipr048377.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048377", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tex55-dimerization-docking-domain-ipr048377.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/tex55-pf17819.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17819", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/tex55-pf17819.yaml" } ], "pfam_ids": [ "PF17819" ], "protein_name": "Testis-specific expressed protein 55", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEPPQEALAEPLKHESPAAPSSAGHTKGQEEDDQKNQAERKADNHTAHRIADQTALRVPSQAESSIFSQATNGVAEQNGHSTPGQAGRRASNPADVSDLRADDQVNQTPSEQTKGKASSQANNVQHEQSDGQVSGLTEERTAEQTERRLPTQAERRTSGQIDGRLAMPSDQRGSRQTDHRMAGQSERRASEQMDRRMSGEAERRTSEQITHRLSKLSERRPSVQIDSGSSVPSDQSPSVQIDSGSSVPSDQRPSVQIDRRMSGKVRRRSSEKTDYRLAGLADPGTSEQTDLRLYGLVDHKTSVKTHHQVYGQATELAEHQAIDQAHSNADQPPVDNAHYTESDQTDHLADRQANHKDQLSYYETRGQSEDRIFPQLGNSKEDKEADYRVQPCKFEDSQVDLNSKPSVEMETQNATTIPPYNPVDARFTSNFQAKDQALFPRLPSISSKLNYTSSQEKTQAIVTKSDEFSEIDQGKGYHIRNQTYRRFPSIVYEDPYQVSLQYMEKHHILQIFQQITENLVYEKPEDPLNFMLCQV", "sequence_length": 536, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "730560f94b60a8ff736d426903ff9e5a8904115ef7f61b4eed0c377e9e802e49", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96M34.json", "taxon_id": "9606", "uniprot_accession": "Q96M34", "uniprot_release": "2026_03" } ], "pfam_id": "PF17819", "short_name": "Tex55", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5583-pf17821.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17821", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5583-pf17821.yaml" } ], "pfam_ids": [ "PF17821" ], "protein_name": "Putative uncharacterized protein LINC02898", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVRMSRPLFLDWAWRPLCSPSQSLPLTYGPEGWILQWKGTCRQQTALHCPFDFPQAPLRGRHTLSQVPNKGHEKASAVQLPEKQGTDQSRRGPTSAVTKARTSYPESETFIVYLCSYFWNSSKGVYMSGST", "sequence_length": 131, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ccc110c182f6e86eb0e2b3971864d6b224022aba34766d054e8716958da7b7ff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6ZV80.json", "taxon_id": "9606", "uniprot_accession": "Q6ZV80", "uniprot_release": "2026_03" } ], "pfam_id": "PF17821", "short_name": "DUF5583", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/armh2-pf17822.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17822", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/armh2-pf17822.yaml" } ], "pfam_ids": [ "PF17822" ], "protein_name": "Armadillo-like helical domain-containing protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANSRFSCTQIWVKMYGYFAGLCRRLQKFWRVTVKGFFVKKKEKKIPSAETYFHEEKIVVLGQVLMNESLPIEKRAQAAQKIGLLAFTGGPPAGNFAAEYMEEVAHLLQDEELAPKIKILLLQSVACWCYLNPVSQKRAKSLQFIPILISFFEGRFESTIKSETNSYLLLKFWTCYVLSVMTCNNLSCVKELKDHSALKYHLQMLAAENWSGWTENFAEVLYFLIGFHRN", "sequence_length": 230, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fe350ab54b2cca4e0b3a7de8755cfa13055248c80ed84b6cf495402740d68c7d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/H3BNL8.json", "taxon_id": "9606", "uniprot_accession": "H3BNL8", "uniprot_release": "2026_03" } ], "pfam_id": "PF17822", "short_name": "ARMH2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5585-pf17823.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5585-pf17823.yaml" } ], "pfam_ids": [ "PF17823" ], "protein_name": "Uncharacterized protein C11orf24 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWTALVLVWISSVPLSRSHTVPAVPRHLVTNKWPRAGKQNLSGDAVPRADNTSTLRAATVPPAPVTLTTGTWAATLNSTRVTAETTPHGTNTSTPTTREGTADSVTSRILAAPTSSSPSSVRQTLPTTIAGLPSLSTPRAEVPRTNASVSPRTAIATTVAPHTGTPTTGTVTAVSTVTPASGTVTAAVGTVTPAAGTVTAAVGTVTPAAGTVTAAVGTVTPAAVGTVTAAVGTVTSAAGTINTSDPHARTLSPAKSTPTNTSSRNPIPTSGAQTQGTTIQVTTDQPVHSTAGRPTPSPSNTTLEPNTPKSVASTSSAVVTTTQVQTKEPSASTVPVLPTSMSPEVEATSPTTQPSPLLPTQGTGGPGILLTTEQVGTKATAGTASAGPTSRSSGDVKVPTTASCQLSTQGQYLVVTTDPLTPSLVNKMFLLVVLIVGVTLFIAVLMMFALQAYESYKKKDYTQVDYLINGMYADSEM", "sequence_length": 477, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3096f814f0ee98a3f37636381ebc09f074b850c8ae8914456fed6ed138380c41", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4V7A5.json", "taxon_id": "10116", "uniprot_accession": "Q4V7A5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5585-pf17823.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5585-pf17823.yaml" } ], "pfam_ids": [ "PF17823" ], "protein_name": "Uncharacterized protein C11orf24", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWTALVLIWIFSLSLSESHAASNDPRNFVPNKMWKGLVKRNASVETVDNKTSEDVTMAAASPVTLTKGTSAAHLNSMEVTTEDTSRTDVSEPATSGGAADGVTSIAPTAVASSTTAASITTAASSMTVASSAPTTAASSTTVASIAPTTAASSMTAASSTPMTLALPAPTSTSTGRTPSTTATGHPSLSTALAQVPKSSALPRTATLATLATRAQTVATTANTSSPMSTRPSPSKHMPSDTAASPVPPMRPQAQGPISQVSVDQPVVNTTNKSTPMPSNTTPEPAPTPTVVTTTKAQAREPTASPVPVPHTSPIPEMEAMSPTTQPSPMPYTQRAAGPGTSQAPEQVETEATPGTDSTGPTPRSSGGTKMPATDSCQPSTQGQYMVVTTEPLTQAVVDKTLLLVVLLLGVTLFITVLVLFALQAYESYKKKDYTQVDYLINGMYADSEM", "sequence_length": 449, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b5e20e0bf0ed860406362a1342bb2166042c76fdbdc6f61585e8073cae22a09f", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96F05.json", "taxon_id": "9606", "uniprot_accession": "Q96F05", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5585-pf17823.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5585-pf17823.yaml" } ], "pfam_ids": [ "PF17823" ], "protein_name": "Uncharacterized protein C11orf24 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWTALVLVWISSVLLPRSHMMSAEPRNIVTNKWPKAVNQSMLRDTVPRTDNTFTERTAIVPPAPVTLTTETWAATLNSTRVTAEVTTHGTNTSTPTTREGTTDRVTSRTLAVPTSSGPSSAEQTRPTTIAGLPSLSTPHAEVPRTNASVSPRTAMAATVAPHTATLAAGTVNTSDPHTRTPSPAKSTPTDTSSKNPIPTSGAQIQGTTVQLTTDQPVHSTAGRSALSPSNATLEPTTTQVQTKEPSASTVPARATSLSPDVDVISPTTQPSPTLPTQGTGGPGTLLTTEQVGTKTTSGTASAGPTSRSSGDIKVPTTDSCQPSTQGQYLVTIDALTPSLVNKMLLLVVLLVGVTLFIAVLVMFALQAYESYKKKDYTQVDYLINGMYADSEM", "sequence_length": 392, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ea97cd534d788ef680b21219849d4af5621aafb84e82cae379228f0eb3c180ff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9D8N1.json", "taxon_id": "10090", "uniprot_accession": "Q9D8N1", "uniprot_release": "2026_03" } ], "pfam_id": "PF17823", "short_name": "DUF5585", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5586-pf17824.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17824", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5586-pf17824.yaml" } ], "pfam_ids": [ "PF17824" ], "protein_name": "Uncharacterized protein C8orf34 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLQQSRIQSYLEKNKIGPLFEEMMTKLITETPDHPIPFLIGHLQTKQESPGRIQRTLSGSAALWAEGSSEYKGTRRDSRGYEKPWQIHPKKPKKSKSDLAVSNISPPSPESKSLPRSILRPTWDWRTKPESRGFDELNHILLESKKLGKALENLSRSIAVSDDFDLDPRAYNSVLRPRVVGEWVGREEEDLDPLAAEMFQPPVPRAKTEGWTSKDNSPVGSLKMETKGKGLKQQQQNHKKLLAAMLSQDSFDSMPDSAPSVTEDEMEDEDDAMELLEDLDDLRMEGVTGLLQSGSKFSQGRSSYYTEPQAKVTLNICSRCARLQGDSLTARTEEEPERHVPEQAVPEVPCPLPTVTETLTATEDLQTASQVTGLRHPVWASDVKPIRGTSPQTARRALQLQDSLFSKELENMGKHLAEVEKDLAKLAEQGKLNRSPNSPHRSLLLPPLFHTTNTLPVLGQTSRPQSPSSLSSKTTGLPLHNPKPTSLMTDRTSPSNSSSRAQTPSRPITPNSLMMRSFTAAGHGNKERVYGRSRSRPVTPTGQITRPILTPPGLSTTDLYGGLWSTLTEDEFYQQLQAVRKPWRIPSDAESDCLDPPEQDKCEFYTSDPSHSLKTL", "sequence_length": 618, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "65a556a5ebcc1e0a8217c20ac05fea0b844c36fb24a40876053f6b0cb590e25a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A3KP40.json", "taxon_id": "7955", "uniprot_accession": "A3KP40", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/dimerization-docking-d-d-domain-found-in-protein-vest-1-and-similar-pr-cd22980.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22980", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/dimerization-docking-d-d-domain-found-in-protein-vest-1-and-similar-pr-cd22980.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5586-pf17824.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF17824", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5586-pf17824.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q49A92", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF17824" ], "protein_name": "Uncharacterized protein C8orf34", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7dc84b88b2219cb8f4cb4672ea75c5cb4340bda5e2c3980f846f1ee314a16748", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSSPLASELSELAALRPGFRLSAPHARVAPRAATHARGRGRASHAGQPRLRSSCPGPSPGKRRVVPSGGAQPRVLPALSSRSHLFPMASHPQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNRGQLQRTLSGSAALWAESEKSESKGTRRDFRSYDKPWQLNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVEHPKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETVTFNSSLLRPRVIGEWIGREENDADPLAAEMLQPPIPRSKNDQWESEDSGSSPAGSLKMEPKNKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVTEEDIDNEDDAMELLEDLNDLRMEGVTTLVPSGSKFNQGRPTYPAEPQAKVTLNICSRCARLQGDNLEERTEESLPILHSPDEKIPDSFDSLPGTEEALMEEGDEFEKASKLTGPGEASSGVGHSLKNYMEEDESLKQLQVVHQPWILPSDTESEGVEAEQEKRSADLLLCVPCSSCPTLVYSGL", "sequence_length": 538, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7dc84b88b2219cb8f4cb4672ea75c5cb4340bda5e2c3980f846f1ee314a16748", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q49A92.json", "taxon_id": "9606", "uniprot_accession": "Q49A92", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/dimerization-docking-d-d-domain-found-in-protein-vest-1-and-similar-pr-cd22980.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22980", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/dimerization-docking-d-d-domain-found-in-protein-vest-1-and-similar-pr-cd22980.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5586-pf17824.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17824", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5586-pf17824.yaml" } ], "pfam_ids": [ "PF17824" ], "protein_name": "Uncharacterized protein C8orf34 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNQGQLQRALSGSAALWAESESSEPKGTRRDFRSYDKPWQMNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETLAFNSSLLRPRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESEDSSSSPAGSLKMEPKTKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNEDDAMELLENLDDLRMEGVTTLVLSGSKFNQGRPTHPAEPQAKVTLNICSRLQGDNLMERTEDTLQILHTPDEIIPDSLDSLPGTEETLMEEGEDFEKTSNLTEPGEASSGAHSLKSYMEEDESLKQLQVVHQPWLLPSDTESEGIEAEQDKRSADLLCVPCSSCPTLIYSGLSVKPAKEVASGP", "sequence_length": 459, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a5dc48029933ae2fb95d3f68e2a1816b9ee81aead0b776ab15ed6c25e2c63662", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BZJ8.json", "taxon_id": "10090", "uniprot_accession": "Q8BZJ8", "uniprot_release": "2026_03" } ], "pfam_id": "PF17824", "short_name": "DUF5586", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/shoc1-atpase-pf17825.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/shoc1-atpase-pf17825.yaml" } ], "pfam_ids": [ "PF17825", "PF29906", "PF29917" ], "protein_name": "Protein shortage in chiasmata 1 ortholog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALNGRTMFPAFKYYAIDYLQEDIIKERLYRDALLLQIPSCLNQDKNIIDDKYRTPWTRAIPVQEMEDNSVLEQWRTRFCVEGVPEKKTVTGVMINGTFEEIVPSSNPNSPPGIENDKLFPSKDYVDDFIPVKCSLYYPGVKAEHQGLLIDEEMIFMNKAMDNHLPTVNGLLSRLKLYLVKDPFLDFKEELSGKDNFTEYFSVQECSEPFVRDFHMAEETFCKKKLPSVFPSGFKSLISTNPKQEILILPPSKLKKPLNSIPKIMDSVDESECFKGDITSKHEFDTEDIKCNSTENLTFASLCEPECSEPGDLEMPPTHLILPRQHSAVSSLHMGFQTFPFSATCKINLLSAGESANKYCMLWQLGGCRNSWVSFLLTVPRFQEPSSQYSLADMRNIFSVKGDSLVINPAKAKGWRQARLHPIMAETLAHLKAYLCHNGLSSQETKLEIFLPTKVFQLESWLELKSRPLPIVPISEKSTDVHQLHPQKRPIPSSEKEVPHLCLSGESISVKKSKVEANPKNDQEPEARIMQKPENSCVGLGCSSQVPSAESASSSQIQASYDKKQDDLDLLSEFIILRSKHQTFPSEADVDVKSHDHDQNNEFQDKEKYSLTLQEESLVASNSKAPEERCEERTDGVIEIPASDTQCQAYCLLEATANPILKELVCLCTYPAANWKFATVNFDQTRFFLKEQEKKINDATHPDKNDDRKMTFRHAALLHLLITIRDVLLTCNLDTALGYLSNAKDIYKSVLDSRLDNIWRQLKILQFIKEKRPKSNYKIQELQCQILSRLQNQQQMKVLIIIRMDSDGEKHLLIKTLKKIEGLTMTVLRSNDRKKILETTSILKGTNACVVVHNHSIGADFPWSSFSLVVEYNHVGHSCWAEHCQLLDIPFLAFKVAVPDTALQRDALLDGFGGFLLKIPIPYVFFASEGLLNTPEILRLLESNYNITLVERCCCGSLKLFGSTECYVVVTVDEHTAIVVQDLEELHHEKASDNIIMRLMALSFQYSCCWIILYSKETLNSQYHLTEETLRHLAQVYAALVSSGLKSEELDVKLIIAPGVEETALIIRQIADHNLMTSTRDPHEWLDKSWVEVSPSKEEMSLLDFPCINPLVAQLMLHRAPSLHWLLIATPAELQELLPQVPGKVLKHFCSITSLFKISSPSMTKSSQISSLQEDMNQTDLFISQSSAPIIQEQEEYYPYEDSEGTSSSPVELRATPCMLPSAAPHSQRGCWEDPSCGPDPVQNNPSLMNAESKKVTWPSVPSWSDSESDVFSLARTQVSCEPIMTLTDSQRRGTNGFVNCPEAKGPRNMQVSTPVFLPENSQSHLHWDFKKNSCRKQIYSFNPSCGTEQTTYNKWYSWKDDFSSNQPECLWDEMEDVTYRNANAGTRETFWRELPAVPSWDSPCASDSNANQRGFKGLDFCQRAGNYLGQRSLPVSSSNWGDYKTPTDLMYSQVPQPKKRRLMYEKVPGRVDGQTRLKFL", "sequence_length": 1481, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c4fc81f5f8681890d848ba53e3dd03bead7cce10776d28ee504f1dd0c672d82d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2ALV5.json", "taxon_id": "10090", "uniprot_accession": "A2ALV5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/shoc1-atpase-pf17825.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17825", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/shoc1-atpase-pf17825.yaml" } ], "pfam_ids": [ "PF17825", "PF29906", "PF29917" ], "protein_name": "Protein shortage in chiasmata 1 ortholog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDTSVLDQWKASFFVEDFLEKKTITRMVTQINCEFEEVVPSSNPDSQIEVEEVSLYTHMDYNEVFTPVSCLEKCSALQNQNQDLFIDDKGILFVSSRKHLPTLPTLLSRLKLFLVKDPLLDFKGQIFTEANFSRECFSLQETLEAFVKEDFCMDKVNFCQEKLEDTICLNEPSSFLIEYEFLIPPSLKPEIDIPSLSELKELLNPVPEIINYVDEKEKLFERDLTNKHGIEDIGDIKFSSTEILTIQSQSEPEECSKPGELEMPLTPLFLTCQHSSVNSLRTELQTFPLSPVCKINLLTAEESANEYYMMWQLERCRSPLNPFLLTVPRIQEPHSQYSVTDLKKIFSVKEESLVINLEKAEWWKQAGLNLKMMETLEHLNTYLCHDNLSSNDTKIEIFLPTKVLQLESCLEHKSHSSPIALIDEKSTNAHLSLPQKSPSLAKEVPDLCFSDDYFSDKGAAKEEKPKNDQEPVNRIIQKKENNDHFELDCTGPSIKSPSSSIIKKASFEHGKKQENDLDLLSDFIMLRNKYKTCTSKTEVTNSDEKHDKEACSLTLQEESPIVHINKTLEEINQERGTDSVIEIQASDSQCQAFCLLEAAASPILKNLVSLCTLPTANWKFATVIFDQTRFLLKEQEKVVSDAVRQGTIDEREMTFKHAALLHLLVTIRDVLLTCSLDTALGYLSKAKDIYNSILGPYLGDIWRQLEIVQFIRGKKPETNYKIQELQCQILSWMQSQQQIKVLIIIRMDSDGEKHFLIKILNKIEGLTLTVLHSNERKDFLESEGVLRGTSSCVVVHNQYIGADFPWSNFSFVVEYNYVEDSCWTKHCKELNIPYMAFKVILPDTVLERSTLLDRFGGFLLEIQIPYVFFASEGLLNTPDILQLLESNYNISLVERGCSESLKLFGSSECYVVVTIDEHTAIILQDLEELNYEKASDNIIMRLMALSLQYRYCWIILYTKETLNSEYLLTEKTLHHLALIYAALVSFGLNSEELDVKLIIAPGVEATALIIRQIADHSLMTSKRDPHEWLDKSWLKVSPSEEEMYLLDFPCINPLVAQLMLNKGPSLHWILLATLCQLQELLPEVPEKVLKHFCSITSLFKIGSSSITKSPQISSPQENRNQISTLSSQSSASDLDSVIQEHNEYYQYLGLGETVQEDKTTILNDNSSIMELKEISSFLPPVTSYNQTSYWKDSSCKSNIGQNTPFLINIESRRPAYNSFLNHSDSESDVFSLGLTQMNCETIKSPTDTQKRVSVVPRFINSQKRRTHEAKGFINKDVSDPIFSLEGTQSPLHWNFKKNIWEQENHPFNLQYGAQQTACNKLYSQKGNLFTDQQKCLSDESEGLTCESSKDETFWRELPSVPSLDLFRASDSNANQKEFNSLYFYQRAGKSLGQKRHHESSFNSGDKESLTGFMCSQLPQFKKRRLAYEKVPGRVDGQTRLRFF", "sequence_length": 1444, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4d0df45de2f63825ca7f790901c2c0acb3d6aac7606d7062c7c1664f7919e742", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VXU9.json", "taxon_id": "9606", "uniprot_accession": "Q5VXU9", "uniprot_release": "2026_03" } ], "pfam_id": "PF17825", "short_name": "SHOC1_ATPase", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf5588-pf17826.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17826", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf5588-pf17826.yaml" } ], "pfam_ids": [ "PF17826" ], "protein_name": "Uncharacterized protein C8orf76 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METGCWVLGGEFEDSVFEQKPERQPEPPSSYGAKLCEPQWFYEETESSNDIEVLTLKKFRGDLAYRRQEYEKALQEYSSISKQLPSTNFAMKRDVQEGQARCLAHLGRHEEALEIAVDLESKATNTEHLTSALSLHLAIFSRRQSLEKTILYLQKLISLHPLNPWSWCKLAEAYLSPGPDLPALGESPQGQKSSASSDKAVRASSVHSGTGCLPFPAPSPDSAVFSVEASGCDTQQDMQNCLAARRAAAQTEAQRKACAALIRARLLLQLAQSQQTSFALEKNLRTQQEIAQKVKEFSFREDTLLLMEEAMGEDIVPERIKEELHPEVQCVGPAALTASVAASSKEFEDKWFRKVRDHFSPLEKQSHVDIQIMA", "sequence_length": 374, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4ed5ac3c18372c5441f06dbdafae4253c484e2cecd29d32521ada877edf276a8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5BK24.json", "taxon_id": "10116", "uniprot_accession": "Q5BK24", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf5588-pf17826.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17826", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf5588-pf17826.yaml" } ], "pfam_ids": [ "PF17826" ], "protein_name": "Zinc fingers and homeoboxes protein 1, isoform 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRKLWQWFYEETESSDDVEVLTLKKFKGDLAYRRQEYQKALQEYSSISEKLSSTNFAMKRDVQEGQARCLAHLGRHMEALEIAANLENKATNTDHLTTVLYLQLAICSSLQNLEKTIFCLQKLISLHPFNPWNWGKLAEAYLNLGPALSAALASSQKQHSFTSSDKTIKSFFPHSGKDCLLCFPETLPESSLFSVEANSSNSQKNEKALTNIQNCMAEKRETVLIETQLKACASFIRTRLLLQFTQPQQTSFALERNLRTQQEIEDKMKGFSFKEDTLLLIAEVSVSLGFM", "sequence_length": 292, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3931fd092e1113bc350f912167ec883f0bae3efd39d588a6dcdc5585346dffa9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96EF9.json", "taxon_id": "9606", "uniprot_accession": "Q96EF9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf5588-pf17826.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17826", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf5588-pf17826.yaml" } ], "pfam_ids": [ "PF17826" ], "protein_name": "Uncharacterized protein C8orf76", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSGCWLFGGEFEDSVFEERPERRSGPPASYCAKLCEPQWFYEETESSDDVEVLTLKKFKGDLAYRRQEYQKALQEYSSISEKLSSTNFAMKRDVQEGQARCLAHLGRHMEALEIAANLENKATNTDHLTTVLYLQLAICSSLQNLEKTIFCLQKLISLHPFNPWNWGKLAEAYLNLGPALSAALASSQKQHSFTSSDKTIKSFFPHSGKDCLLCFPETLPESSLFSVEANSSNSQKNEKALTNIQNCMAEKRETVLIETQLKACASFIRTRLLLQFTQPQQTSFALERNLRTQQEIEDKMKGFSFKEDTLLLIAEVMGEDIPEKIKDEVHPEVKCVGSVALTALVTVSSEEFEDKWFRKIKDHFCPFENQFHTEIQILA", "sequence_length": 380, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b4e007e4ce6c1cb599dfc5e1643ff59e278fc62e1652bedeb77c39148bfab43e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96K31.json", "taxon_id": "9606", "uniprot_accession": "Q96K31", "uniprot_release": "2026_03" } ], "pfam_id": "PF17826", "short_name": "DUF5588", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pre-pua-nip7-pf17833.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pre-pua-nip7-pf17833.yaml" } ], "pfam_ids": [ "PF03657", "PF17833" ], "protein_name": "60S ribosome subunit biogenesis protein NIP7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRQLTEEETKVVFEKLAGYIGRNISFLVDNKELPHVFRLQKDRVYYVPDHVAKLATSVARPNLMSLGICLGKFTKTGKFRLHITSLTVLAKHAKYKIWIKPNGEMPFLYGNHVLKAHVGKMSDDIPEHAGVIVFAMNDVPLGFGVSAKSTSESRNMQPTGIVAFRQADIGEYLRDEDTLFT", "sequence_length": 181, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cd4149ad98b80658ca48d1b1c160820504480c2e79c00295f239251b3c5dee20", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q08962.json", "taxon_id": "559292", "uniprot_accession": "Q08962", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/pua-rna-binding-domain-of-ribosome-assembly-factor-nip7-and-similar-pr-cd21151.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd21151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/pua-rna-binding-domain-of-ribosome-assembly-factor-nip7-and-similar-pr-cd21151.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/60s-ribosome-subunit-biogenesis-protein-nip7-pre-pua-domain-ipr040598.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040598", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/60s-ribosome-subunit-biogenesis-protein-nip7-pre-pua-domain-ipr040598.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/upf0113-pua-domain-ipr005155.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR005155", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/upf0113-pua-domain-ipr005155.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pre-pua-nip7-pf17833.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pre-pua-nip7-pf17833.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/upf0113-pf03657.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03657", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/upf0113-pf03657.yaml" } ], "pfam_ids": [ "PF03657", "PF17833" ], "protein_name": "UPF0113 protein MJ1410", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKVRKLKNAEINLIEEELSKYTDKDFVKSFKYENLIVLEGKWLTVCYTNIETIKKLNMFQDIFSVGNVFGEIKRKFRLSLEGFTLISPNIINNYAIVNEKAEALFLYGRDIFKESIIEVKGFGRIAVFNKNREFLGIGLFDGKIIKNIKDKGWYLREGG", "sequence_length": 159, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "406bea36632df90fc05ef6d0097f900da600fda5068180187343736f51de50e8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58805.json", "taxon_id": "243232", "uniprot_accession": "Q58805", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pre-pua-nip7-pf17833.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pre-pua-nip7-pf17833.yaml" } ], "pfam_ids": [ "PF03657", "PF17833" ], "protein_name": "60S ribosome subunit biogenesis protein NIP7 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEMMLKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETLT", "sequence_length": 180, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2c0349befe5620eae969396b31759c0f55e98a18191a09265c0aa9d2ca4a71e1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CXK8.json", "taxon_id": "10090", "uniprot_accession": "Q9CXK8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pre-pua-nip7-pf17833.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pre-pua-nip7-pf17833.yaml" } ], "pfam_ids": [ "PF03657", "PF17833" ], "protein_name": "60S ribosome subunit biogenesis protein NIP7 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETLT", "sequence_length": 180, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d5bf5379a31fc2130f51cf6256950d7b3b8dd21d1a05e54e41ea4de04b712860", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y221.json", "taxon_id": "9606", "uniprot_accession": "Q9Y221", "uniprot_release": "2026_03" } ], "pfam_id": "PF17833", "short_name": "pre-PUA_NIP7", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/cell-wall-elongation-penicillin-binding-protein-regulator-tseb-nf040668.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF040668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/cell-wall-elongation-penicillin-binding-protein-regulator-tseb-nf040668.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cell-wall-elongation-regulator-tseb-like-domain-ipr041401.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cell-wall-elongation-regulator-tseb-like-domain-ipr041401.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pepsy-domain-ipr025711.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025711", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pepsy-domain-ipr025711.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pepsy-pf03413.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03413", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pepsy-pf03413.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tseb-pf17881.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17881", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tseb-pf17881.yaml" } ], "pfam_ids": [ "PF03413", "PF17881" ], "protein_name": "Probable cell wall elongation regulator TseB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRKKALIFTVIFGIIFLAVLLVSASIYKSAMAQKEEGHEAAAAEAKKETDLAHVDQVETFVGKEKYYVVKGTDKKGTALYVWVPADKKAKILSKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTGKILKNITP", "sequence_length": 161, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4f5f395d11096a906ac88b0f8cca1e4f4d0c7e574b97a2b7181050d4e06db468", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54396.json", "taxon_id": "224308", "uniprot_accession": "P54396", "uniprot_release": "2026_03" } ], "pfam_id": "PF17881", "short_name": "TseB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanobrevibacter smithii (strain ATCC 35061 / DSM 861 / OCM 144 / PS)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5591-pf17884.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17884", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5591-pf17884.yaml" } ], "pfam_ids": [ "PF01472", "PF01702", "PF14810", "PF17884" ], "protein_name": "tRNA-guanine(15) transglycosylase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFEIKAKDNRGRVGVLKTNSGDVKTPNLMPVIHPRKQTIDVKKYGADIVITNAYLIYKDEDLKKKAAEIGLHKLINFDGPIMTDSGSFQLSVYGDVDITNKEVIEFQELIKTDIGTSLDIPTAPFVTREKAEADLEVTLERAKEAVDYRNSQNMEMKLNSVVQGSTFPDLRRKCADELTKLDADLYPIGAVVPLMESYHYKELVDVVMNSVAHLPDSKPRHLMGAGHPMIFALAVAMGCDLFDSAAYILYAEDDRLLSVRGTYKLENLQEMPCSCEVCCNYTPDDLRAMPKEKRRDLIAQHNLNVSFAELRLIRQAIYEGSLMELVEERCRAHPNLLEALRQLGNYSKDLEKYDPRSKKSAFFYTGSESLYRSEVLRHIQKLRAMPRKRDLVILPPSRKPYSKYVSSKLGNFYVYGSEQELDLNNTDFMVLDIPFGLIPLEIDEIYPLSQNESPRTWDVSSLEFIEDFISEFVEYYDQVLIHSNVIKKLDIGLYNIHSQSDEIRYAKDDLKKVKAIADYQFGVGAGDALFAGNIKIEKSKKTGKIRHIYDGKTLIVNMRASDSFLILSKEGAKRLHAATQYPKNRVVVNKDSEPFSLEGKSVFAKFVVECDEDIRAKDEVLIVNEEDKLLAYGKALLGACEINDFQTGQAIKTRKGMKK", "sequence_length": 659, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0218921624d907a530260373491f280ba5b497b281122ff42534f66b8e9dda62", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A5UNI4.json", "taxon_id": "420247", "uniprot_accession": "A5UNI4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5591-pf17884.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF17884", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5591-pf17884.yaml" } ], "pfam_ids": [ "PF01472", "PF17884" ], "protein_name": "Archaeosine synthase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLEPIAYDIGRLCKEEDKELTPKLIDIDVIGLSQEKIFYGIMTPFRCPNSKSIYELRKSYVKADGIKMPFDTFRELTSIFKKSFIGTVKYKGNVFKYQILNFGKHVDLIELEDADLYIIADGRRLIERKELQIIPKIREKISPNSAIYSPAVFPWEIPLLAYIGVDYFDDSLAKLYASMGYKFTKNRAVKVDSFSFEELYNNNKKVYEEILEEVRIAIKNGFLRNVVEETAVSHPYLWANYRRYEPDLRNIPLSKENKIIVTTNINIPEVKKYLERLDNYEPYSNIIVLLPCSSKKPYSISQSHQKFIKAIKSAKVVVEEVILTSPYGLVPRALERLVNYDIPVTGEWSFEEIELINNCLKNFLKKVKEKFDDYIVIAHLPEHYLEILELDDIVITSKGNPTSEEALKNLTDTLKKYKELTKSKDINKKGQRIHNIQQLAEFQFGINFIPNEIFINHKGQIFTKINNKNQQIASINPKNGLLILTLSGGELLWNSGGKDINYIEVNYEIKKGSLFPPGFVDCNENISYNDEVVLIKDDTFLGIGRALMSGFEMKKAKHGALVNIRNVKS", "sequence_length": 569, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": 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"MVGSGSHTPYDISNSPSDVNVQPATQLNSTLVEDDDVDNQLFEEAQVTETGFRSPSASDNSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSAKSEAVVVLLCRIPCAQTKNANWDTDQWQPLIEDRQLLSWVAEQPTEEEKLKARLITPSQISKLEAKWRSNKDATINDIDAPEEQEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQLKESQALEHISVSWSLALNNRHLASFTLSTFESNELKVAIGDEMILWYSGMQHPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKKFAIDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLDTKFRTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKGCLVEGTLDNLQLCTVQLVRPQPRKTERPMNAQFNVESEMGDFPKFQDFDAQSMVSFSGQIGDFGNAFVDNTELSSYINNEYWNFENFKSAFSQKQNRNEIDDRNLYQEEASHLNSNFARELQREEQKHELSKDFSNLGI", "sequence_length": 971, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2cdb097ffa01aa51e40eafea29d55bad784113424b6df062bf10afba3ee8a11d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P30771.json", "taxon_id": "559292", "uniprot_accession": "P30771", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/upf1-1b-dom-pf18141.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/upf1-1b-dom-pf18141.yaml" } ], "pfam_ids": [ "PF04851", "PF09416", "PF13086", "PF13087", "PF18141" ], "protein_name": "Regulator of nonsense transcripts 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAGGPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY", "sequence_length": 1129, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d53e700e6d239ae8af9ea767b63311bbf6d773032026a1c967246d1f4e663c8b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q92900.json", "taxon_id": "9606", "uniprot_accession": "Q92900", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/upf1-1b-dom-pf18141.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/upf1-1b-dom-pf18141.yaml" } ], "pfam_ids": [ "PF04851", "PF09416", "PF13086", "PF13087", "PF18141" ], "protein_name": "Regulator of nonsense transcripts 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGPGGAGAGGAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSYYKEQKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQISMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKTKTGRGGRQKNRFGLPGPSQTTLPNSQASQDVASQPFSQGALTQGYVSMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY", "sequence_length": 1124, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4feff6346f30394f044ae2c084d7ef2d18570b4875290b78eda4f73c7a3109aa", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9EPU0.json", "taxon_id": "10090", "uniprot_accession": "Q9EPU0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/upf1-1b-dom-pf18141.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/upf1-1b-dom-pf18141.yaml" } ], "pfam_ids": [ "PF04851", "PF09416", "PF13086", "PF13087", "PF18141" ], "protein_name": "Regulator of nonsense transcripts 1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSQQSDLFDTASQPDTVADEYTFLEFNTQGDSEFDYQDFGSPTAWPTPSDSISIADVADRGEGGAAADHHSEASSPSSLSAGAGNGAKVGRGGVGGSGGVSSSSQVDALAAGVGNLNFEETGDDDGFDYGKNDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHRDSPLGETILECYNCGCRNVFLLGFISAKTDSVVVLLCRDPCLNVNALKDMNWDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEELWKTNPDATLEDLEKPGVDDEPQPVQPKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKENLTVRWDIGLNKKRVAYFVFPKEENELRLVPGDELRLRYSGDAVHPSWQSVGHVIKLTAQEEVALELRANQGVPIDVNHGFSVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQMVRNTLPRRFGVPGLPELNASQVNAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEYLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKNLKRATEREITQSADVICCTCVGAADLRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTLGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPRKIYNDRRLFYGGGAGMIGNDNFGSGNPNADRRGSRGRAGGSYLPSGPPNGARPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRGPVGAVPHAPQPGNHGFGAGRGTSVGGHLPHQQATQHNVGTIGPSLNFPLDSPNSQPSPGGPLSQPGYGSQAFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASPGGFAVDYATQGAHGAFPGNFMNQNSQGGYSRFSGINDFMSQEYMAHGGQGLFTQAGFIDSSQDDGQQNPYGVNNPNLQSQGLPNSLYSQPFAHYNTQPLNLSGPQQSQPNQSSQNPKHPYNG", "sequence_length": 1254, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cc0d3306a3387ebc04a8f16bc5a0cf248ab2fa2c35c63631790ea1149a31e025", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FJR0.json", "taxon_id": "3702", "uniprot_accession": "Q9FJR0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/upf1-1b-dom-pf18141.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18141", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/upf1-1b-dom-pf18141.yaml" } ], "pfam_ids": [ "PF04851", "PF09416", "PF13086", "PF13087", "PF18141" ], "protein_name": "Regulator of nonsense transcripts 1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVDTYAPSSALSFLDMDDNELLPGADTQPTQYDYRDFTMPSTSQSQTQNDQLEIAQRCSAGDSHPRLASITNDLADLQFEEEDDEPGSSYVKELPPHACKYCGIHDPATVVMCNNCRKWFCNGRGSTSGSHIINHLVRAKHREVTLHGEGPLGETILECYSCGVRNVFVLGFIPAKADSVVVLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLAWLVKQPSEQGQLRARQISAAQINKLEELWKENIEATFQDLEKPGIDSEPAHVLLRYEDGYQYEKTFGPLVRLEAEYDQKLKESATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLHYVGELYNPWSEIGHVIKVPDNFGDDVGLELKSSTNAPVKCTSNFTVDFIWKCTSFDRMTRALCKFAIDRNSVSNFIYSRLLGHGRADSNDEVLFRGPQPKLFSAPHLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFLALHNQIRNMETNSELKKLQQLKDETGELSSADEKRYRNLKRAAENQLLEAADVICCTCVGAGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKESLIHFQKPKKLVNSMNIGAHFMSTIIADAKEVMVPGSIYDRSGGYGQGRQMVGQSMNGGQYGGSGGGPYGNSPLGYGTPSSNSMVGFGLGNGGNGAAGGNNNFGGAGPSWAAAHLHHDSIGYISNEHGAAALGNMPVPVGMFMNMSNIPPRFYNQHQQAIMAVKQNRAIQQQTGNFSPGNSGPGVTGVGVGRSATPGGNKKTNKLGKSRVTGGGTGGAPLTQGSSVCNAAPYSQHPMPLSLQMTQPSGFALSQQPELSQDFGQISQMDGLLSQDVAFNASGERSLNQFSQPY", "sequence_length": 1180, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bfb9200c1c5e44c30a85dfa097e5b372521b1a1418c6a56dd522119ed6aa9437", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VYS3.json", "taxon_id": "7227", "uniprot_accession": "Q9VYS3", "uniprot_release": "2026_03" } ], "pfam_id": "PF18141", "short_name": "UPF1_1B_dom", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:B3LF48", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00350", "PF12763", "PF16880", "PF18150" ], "protein_name": "EH domain-containing protein 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "39dea8f38a39ae699333027e638946d69bf0be2457b26f630153700d5a919157", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "METSSTISIGSCLKEHQKIYKEWFNIADSDGDGRVSGNDATKFFAMSKLSRQELKQVWAVADSKRQGFLGLSEFITAMKLVSLAQEGHEITSDLLKGSIDMKSVELPVLEGLENVVSKQKVSKTNVDVEDNVVTKPQVTAKTPWFKSKSIIKPQVNVVTIVDGLKRLYTEKLKPLEVTYRFNDFASPVLTSSDFDAKPMVMLLGQYSTGKTTFIKHLLGCDYPGAHIGPEPTTDRFVVAMSGPDERTIPGNTMAVQADMPFNGLTSFGGAFLSKFECSQMPHPVLDQITLVDTPGVLSGEKQRMQRSYDFTGVISWFASKCDMILLLFDPHKLDISDEFKRVITSLRGNEDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPINEVAVGPIGKELFEKEQNDLLADLMDVPKKACDRKINEFVKRARSAKINAYIMSHLKKEMPAMMGKSKAQQRLMDNLEEEFGKVQREFHLPAGDFPSVEHFREVLGGYNIDKFEKLKPKMIQAVDDMLGYDIPDLLKKFRNPYDN", "sequence_length": 546, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "39dea8f38a39ae699333027e638946d69bf0be2457b26f630153700d5a919157", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B3LF48.json", "taxon_id": "3702", "uniprot_accession": "B3LF48", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5600-pf18150.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5600-pf18150.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ehd-n-pf16880.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16880", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ehd-n-pf16880.yaml" } ], "pfam_ids": [ "PF00350", "PF12763", "PF16880", "PF18150" ], "protein_name": "EH domain-containing protein 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFSWMGRQAGGRERAGGADAVQTVTGGLRSLYLRKVLPLEEAYRFHEFHSPALEDADFENKPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVDPKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISVIDSPGILSGEKQRISRGYDFCQVLQWFAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQDLFRDIQSLPQKAAVRKLNDLIKRARLAKVHAYIISYLKKEMPSVFGKENKKRELISRLPEIYIQLQREYQISAGDFPEVKAMQEQLENYDFTKFHSLKPKLIEAVDNMLSNKISPLMNLISQEETSTPTQLVQGGAFDGTTEGPFNQGYGEGAKEGADEEEWVVAKDKPVYDELFYTLSPINGKISGVNAKKEMVTSKLPNSVLGKIWKLADCDCDGMLDEEEFALAKHLIKIKLDGYELPSSLPPHLVPPSHRKSLPKAD", "sequence_length": 541, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d5cab326f4171259f8e55137d5338191ba62c3b2846febf99d8fbd3c08d18443", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H223.json", "taxon_id": "9606", "uniprot_accession": "Q9H223", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5600-pf18150.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5600-pf18150.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ehd-n-pf16880.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16880", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ehd-n-pf16880.yaml" } ], "pfam_ids": [ "PF00350", "PF12763", "PF16880", "PF18150" ], "protein_name": "EH domain-containing protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFSWLGTDDRRRKDPEVFQTVSEGLKKLYKSKLLPLEEHYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMQGDMEGIIPGNALVVDPKKPFRKLNAFGNAFLNRFVCAQLPNPVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEFSEVIKALKNHEDKMRVVLNKADQIETQQLMRVYGALMWSLGKIVNTPEVIRVYIGSFWSHPLLIPDNRKLFEAEEQDLFRDIQSLPRNAALRKLNDLIKRARLAKVHAYIISSLKKEMPSVFGKDNKKKELVNNLAEIYGRIEREHQISPGDFPNLKRMQDQLQAQDFSKFQPLKSKLLEVVDDMLAHDIAQLMVLVRQEESQRPIQMVKGGAFEGTLHGPFGHGYGEGAGEGIDDAEWVVARDKPMYDEIFYTLSPVDGKITGANAKKEMVRSKLPNSVLGKIWKLADIDKDGMLDDDEFALANHLIKVKLEGHELPNELPAHLLPPSKRKVAE", "sequence_length": 535, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "115c25fe50be706d85ec9231d65b74ebaf3ed82a3faba2fb9216d5714d941a67", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NZN3.json", "taxon_id": "9606", "uniprot_accession": "Q9NZN3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5600-pf18150.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5600-pf18150.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dynamin-n-pf00350.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00350", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dynamin-n-pf00350.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/eh-pf12763.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12763", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/eh-pf12763.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/ehd-n-pf16880.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16880", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/ehd-n-pf16880.yaml" } ], "pfam_ids": [ "PF00350", "PF12763", "PF16880", "PF18150" ], "protein_name": "EH domain-containing protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFSWLKRGGARGQQPEAIRTVTSALKELYRTKLLPLEEHYRFGAFHSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGDTEGTVPGNALVVDPDKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALMWALGKVVGTPEVLRVYIGSFWSQPLLVPDNRRLFELEEQDLFRDIQGLPRHAALRKLNDLVKRARLVRVHAYIISYLKKEMPSVFGKENKKKQLILKLPVIFAKIQLEHHISPGDFPDCQKMQELLMAHDFTKFHSLKPKLLEALDEMLTHDIAKLMPLLRQEELESTEVGVQGGAFEGTHMGPFVERGPDEAMEDGEEGSDDEAEWVVTKDKSKYDEIFYNLAPADGKLSGSKAKTWMVGTKLPNSVLGRIWKLSDVDRDGMLDDEEFALASHLIEAKLEGHGLPANLPRRLVPPSKRRHKGSAE", "sequence_length": 543, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bce9c2534716433c4f2b46a6c6085a69488b476ba277fb4f9e66140cd63955fd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9NZN4.json", "taxon_id": "9606", "uniprot_accession": "Q9NZN4", "uniprot_release": "2026_03" } ], "pfam_id": "PF18150", "short_name": "DUF5600", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 6, "discovery_scanned": true, "example_count": 6, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5601-pf18151.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5601-pf18151.yaml" } ], "pfam_ids": [ "PF01754", "PF02204", "PF18151" ], "protein_name": "Rab5 GDP/GTP exchange factor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFSASSRVGAKKAEIQEAKAPSPSINRQTSIETDRVSKEFIEFLKTFHKTGQEIYKQTKLFLEAMHYKRDLSIEEQSECTQDFYQNVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQESENWSPDACLGVKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAKEVQDIVEKYPLEIRPPNQSVAAIDSENVENDKLPPPLQPQVYAG", "sequence_length": 492, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f25375bc00505a2f4f230397e6dfa852b82233ba1b4a13b7fe9043ecd69c08b2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O18973.json", "taxon_id": "9913", "uniprot_accession": "O18973", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P54787", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02204", "PF02845", "PF18151" ], "protein_name": "Vacuolar protein sorting-associated protein 9", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "b9dc6a8f7a1509041a14d64f115d725abca7c8640ccb7dd83befb1ce6f679e46", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTDDEKREILKEFDPFSQLEQANGNPDKDVKFKKDDPNRAAAEETNRDISAQDKGDEEPFYDFQIFIKQLQTPGADPLVKYTKSFLRNFLAQRLLWTVSEEIKLISDFKTFIYDKFTLYEPFRSLDNSKMRNAKEGMEKLIMGKLYSRCFSPSLYEILQKPLDDEHMKDLTNDDTLLEKIRHYRFISPIMLDIPDTMPNARLNKFVHLASKELGKINRFKSPRDKMVCVLNASKVIFGLLKHTKLEQNGADSFIPVLIYCILKGQVRYLVSNVNYIERFRSPDFIRGEEEYYLSSLQAALNFIMNLTERSLTIEDHEDFEEAYQRNFKQLAEEKEEEEKKKQLEIPDELQPNGTLLKPLDEVTNIVISKFNELFSPIGEPTQEEALKSEQSNKEEDVSSLIKKIEENERKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIGPCVDALLSLSE", "sequence_length": 451, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "b9dc6a8f7a1509041a14d64f115d725abca7c8640ccb7dd83befb1ce6f679e46", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P54787.json", "taxon_id": "559292", "uniprot_accession": "P54787", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"PF01429", "PF05033", "PF18300", "PF18358", "PF18359" ], "protein_name": "Histone-lysine N-methyltransferase SETDB1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "43a9e24590ad2ec4e627972295436590f7b5135cf229cb135a50a1d4d8424680", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSSLPGCMSLAAAPAAADSAEIAELQQAVVEELGISMEELRQYIDEELEKMDCIQQRKKQLAELETWVLQKESEVAYVDRLFDDASREVTNCESLVKDFYSKLGLQYHDSSSEDEASRPTEIIEIPDEDDDVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAVNKKSSSQDLHKGTLGQVSGELSKDGDLIVSMRILGKKRTKTWHKGTLIAIQTVGLGKKYKVKFDNKGKSLLSGNHIAYDYHPPADKLFVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSELYPICRPLKKTWEDIEDSSCRDFIEEYITAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEPMFSMKTSSASAMEKKQGGQLRTRPNMGAVRSKGPVVQYTQDLTGTGIQFKPMEPLQPIAPPAPLPIPPLSPQAADTDLESQLAQSRKQVAKKSTSFRPGSVGSGHSSPTSSTLSENVSAGKLGINQTYRSPLASVTSTPASAAPPVPPVPPGPPTPPGPPAPPGPLAPPAFHGMLERAPAEPSYRAPMEKLFYLPHVCSYTCLSRIRPMRNEQYRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLFLEMFCLDPYVLVDRKFQPFKPFYYILDITYGKEDVPLSCVNEIDTTPPPQVAYSKERIPGKGVFINTGPEFLVGCDCKDGCRDKSKCACHQLTIQATACTPGGQVNPNSGYQYKRLEECLPTGVYECNKRCNCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDVPTSSDSSGVDMKDQEDGNSGSEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENELSEMTSKDSRPPDLGPPHVPIPSSVSVGGCNPPSSEETPKNKVASWLSCNSVSEGGFADSDSRSSFKTSEGGDGRAGGGRGEAERASTSGLSFKDEGDNKQPKKEDPENRNKMPVVTEGSQNHGHNPPMKSEGLRRPASKMSVLQSQRVVTSTQSNPDDILTLSSSTESEGESGTSRKPTAGHTSATAVDSDDIQTISSGSDGDDFEDKKNLSGPTKRQVAVKSTRGFALKSTHGIAIKSTNMASVDKGESAPVRKNTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCCGAIECRGRLL", "sequence_length": 1307, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "43a9e24590ad2ec4e627972295436590f7b5135cf229cb135a50a1d4d8424680", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O88974.json", "taxon_id": "10090", "uniprot_accession": "O88974", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5604-pf18300.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5604-pf18300.yaml" } ], "pfam_ids": [ "PF00856", "PF01429", "PF05033", "PF18300", "PF18358", "PF18359" ], "protein_name": "Histone-lysine N-methyltransferase SETDB1-B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEMELEPELEEELGVSLDELRKWIEEQVDSSEAVQKRKADLEQLQEWVEQREKEVADIDALCSNASESVVQCEALVKEVYSNMGLVYRESSSDDEGGKANPSEVIEIDDDDDDDVIAVGCLVPPKKSLTQAKDPALKEASAALQRTSQQVQNLAQTVNRTAQSGVTTPVKTGGPPGQGPLAVPAVFMSSAPRNTPTQPNPNIKQDSIKINMTLLGKKRTKTWHRGTLVAIKQVGNNLKYKVRFENKGKSLLSGNHVAFEYHPTLERLFVGARVVARYKDGNQVWLYAGVVAEMPNSKNRMRFLIFFDDGYASYVGLPELYPICRPLKKTWEDIEDASCRDFIEEYITSYPNRPMVLLKPGQIIKTEWEGTWWKSRVEEVDGSLVKMLFLDDKRSEWIYRGSTRLEPMFNLKMNTANSQEKKMAGQQRQRPNMGALRTKGPVVQYTSDNSAAASTGGGAATPGTPTRPVAPQPAGPPQPSRTESPSFKSQMAKKSTGQLALQPRQGMPSDLQPKPIINALQTNTSRLFLLQSGPVHTLTPITPAPQTVQTAISTYTNERVPQEPSYQAPNDRLFYLTHNCSPECLKRIRPTRPNLHRGRNPLLTPLLYEFRRMTGRRRLNRKMSFHVIYKSPCGLSLRNMTEIQRYLFQTQCDFIFLEMFCLDPYVLVDRRFQPQRPFYFIRDITSGREDIPLSCVNEIDNTPPPSVAYSKERIPEDGVYINTSADFLVGCDCTDGCRDKSKCSCHQLTLQATGCTPGGQINPNAGYHYKRLDECLPTGIYECNKRCRCNMQMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESEAHCSDSEGSGVDMSRVKLPASSRHGKSNKMEERNSSTTGKSQDDSSEESDDEKDDDSNEDDSDSSDDTFVKDTYYTTSSVWRSYTTRRQAKGLKEESQDSKDGMSVSAGEDRKPPHMPEETGKSKVASWLTNQSSTSANQSVKVEGGIKTEKKDVMTLSDSDDVQTISSGSDDNKEREKKTQAVVKRQVAVKSTRGIALKSHSMMVKSGGGGAGGGGSGPSHGHGGGGGDNGPKNTRLFFDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCCGSTECRGRLLQIIKTEWEGTWW", "sequence_length": 1216, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cec17d6e81ba0f61d642de70a8086f2983bc8b8d370cac4e3400091017c2001e", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q08BR4.json", "taxon_id": "7955", "uniprot_accession": "Q08BR4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5604-pf18300.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5604-pf18300.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q15047", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00856", "PF01429", "PF05033", "PF18300", "PF18358", "PF18359" ], "protein_name": "Histone-lysine N-methyltransferase SETDB1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "507d82f9fec5d18d8111fc2f8c7fd741002a7b1a1c9802e253e7c3dcc23e73b5", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSSLPGCIGLDAATATVESEEIAELQQAVVEELGISMEELRHFIDEELEKMDCVQQRKKQLAELETWVIQKESEVAHVDQLFDDASRAVTNCESLVKDFYSKLGLQYRDSSSEDESSRPTEIIEIPDEDDDVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAVNKKSSSQDLHKGTLSQMSGELSKDGDLIVSMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGNHIAYDYHPPADKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSELYPICRPLKKTWEDIEDISCRDFIEEYVTAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEPMFSMKTSSASALEKKQGQLRTRPNMGAVRSKGPVVQYTQDLTGTGTQFKPVEPPQPTAPPAPPFPPAPPLSPQAGDSDLESQLAQSRKQVAKKSTSFRPGSVGSGHSSPTSPALSENVSGGKPGINQTYRSPLGSTASAPAPSALPAPPAPPVFHGMLERAPAEPSYRAPMEKLFYLPHVCSYTCLSRVRPMRNEQYRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLFLEMFCLDPYVLVDRKFQPYKPFYYILDITYGKEDVPLSCVNEIDTTPPPQVAYSKERIPGKGVFINTGPEFLVGCDCKDGCRDKSKCACHQLTIQATACTPGGQINPNSGYQYKRLEECLPTGVYECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDAPCSSDSSGVDLKDQEDGNSGTEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENGLSETTSKDSHPPDLGPPHIPVPPSIPVGGCNPPSSEETPKNKVASWLSCNSVSEGGFADSDSHSSFKTNEGGEGRAGGSRMEAEKASTSGLGIKDEGDIKQAKKEDTDDRNKMSVVTESSRNYGYNPSPVKPEGLRRPPSKTSMHQSRRLMASAQSNPDDVLTLSSSTESEGESGTSRKPTAGQTSATAVDSDDIQTISSGSEGDDFEDKKNMTGPMKRQVAVKSTRGFALKSTHGIAIKSTNMASVDKGESAPVRKNTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCCGAIECRGRLL", "sequence_length": 1291, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "507d82f9fec5d18d8111fc2f8c7fd741002a7b1a1c9802e253e7c3dcc23e73b5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q15047.json", "taxon_id": "9606", "uniprot_accession": "Q15047", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5604-pf18300.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18300", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5604-pf18300.yaml" } ], "pfam_ids": [ "PF00856", "PF01429", "PF05033", "PF18300", "PF18358", "PF18359" ], "protein_name": "Histone-lysine N-methyltransferase SETDB1-A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSREKDDENLLRMTKDDLQRWIQAEVERNPHLMQRREQLAQVEEWVKQKERDSTCTRLLYSNACESVLECESVMKGLYALLGLDYRDEDSEEEGGGGQPHDVIQIADDEAERRGNVICNGEDDDNDDLVVIDLGATKETLEPMLEKVTVAIQKSSKLVQDLVQMVSKTSMGATSPLSTSSSDINRPSSSSTPEIVRPESVTPKLEITNSITIVKTESLSSVPKISSLFNSSEQCKSIADHDSYFKPTIKTEPEWTPLTPWEDSESSPFEKLIKTESQSTDVTPSVMTPNKQPELLSFQSTTKIKPEPQSTQANTELSSPPSNSKLLENHNSLSIAAIKNESQLKASVSEVDLLESDSEQSDNAATKTRFKPSEVTASSKLKSSGDHNSASASLNRTDPKVRPVTPSGTPPPSKSPPAVDNTASVETNQTDSELPTETPVEESTLPSNPKEAVIMSDAESTDKTEKPQTRKKSSKPSVTTTSPESRLTSSKSPPVTKTSSTQKETARAQSPSDSIDESADMEDSPDEPSNSPTESPTKTPDKTTRNDAPAKPSKAKKSSKHSSSESSKTLKEIKLKVGAAVLGKKRHNHWSRGTVQEVETEDDGNTYKVEFKKGKTIVLSANHVAAYKPPSLKDLYIGCRVVASAKSENGKSLYNAGVMVELPERKNRMRFLVFFDDGLATYLALPDLYFVCKQTKKVWREIKDESSRKQVKDYLQVYPNPIAVVLRLGQETKAVRNGQFEDCTVLQLDGSLVQICYKNDKQKEWIYKGSDKLEHILTIKNRHKQHSHKKHHSPEGKTQSSQPKTLHSSKSASTSTSSANVSPVSSDSVSPARVTRQSDKTKTSISPQKIMSPAFQPKVVLQKISLPSSISPAARVSNSNTNSSLISAKRPAPDEEEDEYFSEDEVEVLEQEQNKSVYLHQRCCPACLEEVRPHQVDIHHGKNPLLIPLLFKFRRMTARRRIDGKLFFHIFYRSPCGRSLCDMQEVQDYLFETRCDFLFLEMFCMDPFVLVNRARPPSTTTGQPHLYLPDISEGKEVMPVPCVNEVDNTLAPNVTYTKDRVPARGVFINTSSDFMVGCDCTDGCRDRSKCACHKLTIEATSLCTGGPVDVSAGYTHKRLPTSLPTGVYECNPLCRCDPRMCSNRLVQHGMQLRLELFMTQHKGWGIRCKDDVPKGTFVCVFTGKIVNEDKMNEDDTMSGNEYLANLDFIEGVEKLKEGYESEAYCSDTEVESSKKTITMKTGPLLKNSLYKEDSSSGEEPMEVDTAKDKVKVHDKPLGERKLPNKPHETPKDTQKKISELRKNDGQESSGPKRCFAIKSFQRRVKPLESTEAQKEKTKTPKNTRGLFNDEDACYIIDARQEGNLGRYINHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIKAGTELTWDYNYEVGSVEGKVLLCCCGSLRCTGRLL", "sequence_length": 1436, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb3b2c29c3aa51569c2db401bdc59fcc48ad2d2cb1d00bad68c62ce78a64ff93", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1L8U8.json", "taxon_id": "7955", "uniprot_accession": "Q1L8U8", "uniprot_release": "2026_03" } ], "pfam_id": "PF18300", "short_name": "DUF5604", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18310", "short_name": "DUF5605", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18347", "short_name": "DUF5606", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18355", "short_name": "DUF5607", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18356", "short_name": "DUF5608", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "P0AGB0", "commit": "e1c66917e753105c4bf5b7b026193fcefa2b000f", "link_basis": [ "uniprot_pfam_xref" ], "mech": "PathwayMech", "path": "data/pathways/l-serine-biosynthesis-i.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "MetaCyc:SERSYN-PWY", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/PathwayMech/blob/e1c66917e753105c4bf5b7b026193fcefa2b000f/data/pathways/l-serine-biosynthesis-i.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/l-phosphoserine-phosphatase-activity-go0036424.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0036424", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/l-phosphoserine-phosphatase-activity-go0036424.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/phosphoserine-phosphatase-nf008350.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF008350", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/phosphoserine-phosphatase-nf008350.yaml" }, 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"path": "data/traits/sequence/domain/pfam/duf5609-pf18429.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18429", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5609-pf18429.yaml" } ], "pfam_ids": [ "PF00702", "PF18429" ], "protein_name": "Phosphoserine phosphatase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQIQCFESITQKYPQFPTALLANEEPIQNGEPFILYGTKLDITKLEKFQQKCGQNFQIFDVWMVAKNIIVLLKGQWFSDFIKFTHDVEVDIAKLDFSPKLSQAGLLVMDMDSTAIQIECIDEIAKLAGVGELVSAITESAMRGELDFEQSLRCRVGTLKGAPESILQQVRENLPLMSGLVETIQTLQKYGWKTAIASGGFTYFADYLKALLQLDFAASNQFDIEDGKLTGLVKGDVVDAQYKAKTLQHLLEEYGIDSRHSIAIGDGANDLAMMNVAGLGVAFHAKPKVQPQAQIVVNFADLTALLCLLSANDRI", "sequence_length": 314, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6558a5f97a363a550bb83f9247d9ebf8f0f6ab5cc424ec2d3b57895abab3cf8d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44997.json", "taxon_id": "71421", "uniprot_accession": "P44997", "uniprot_release": "2026_03" } ], "pfam_id": "PF18429", "short_name": "DUF5609", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18433", "short_name": "DUF5610", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18446", "short_name": "DUF5611", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"data/traits/sequence/domain/cdd/n-terminal-act-domain-of-the-yet-uncharacterized-small-133-a-a-putativ-cd04874.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd04874", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/n-terminal-act-domain-of-the-yet-uncharacterized-small-133-a-a-putativ-cd04874.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5612-ipr040537.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR040537", "section": "canonical_examples", "url": 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"data/traits/structure/homologous_superfamily/cath/hypothetical-protein-af1403-domain-2-3-40-50-10550.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:3.40.50.10550", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/hypothetical-protein-af1403-domain-2-3-40-50-10550.yaml" } ], "pfam_ids": [ "PF18462", "PF22629" ], "protein_name": "Uncharacterized protein MJ1458", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEIGISIEAENKVGVLHKLTGILSELGGNITYTQQFIKDDGKIGFIYMEVEGIKDIEELKRRMESCECVKSFEIHSSLKKIYGKRVIIIGGGAQVAEVARGAISEADRHNIRGERISVDTLPIVGEENLYEAVKAVATLPRVGILVLAGSLMGGKITEAVKELKEKTGIPVISLKMFGSVPKVADLVVGDPLQAGVLAVMAIAETAKFDINKVKGRVL", "sequence_length": 218, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "033525688249bd399b21ab4156302af5caec17a048910cfdb23c9bfe91118fb1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58853.json", "taxon_id": "243232", "uniprot_accession": "Q58853", "uniprot_release": "2026_03" } ], "pfam_id": "PF18462", "short_name": "DUF5612", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18467", "short_name": "DUF5613", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1308-pf07000.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07000", "section": "canonical_examples", "url": 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"MSAHSMLCERIAIAKELIKRAESLSRSRKGGIEGGAKLCSKLKAELKFLQKVEAGKVAIKESHLQSTNLTHLRAIVESAENLEEVVSVLHVFGYTDTFGEKQTLVVDVVANGGHTWVKAIGRKAEALHNIWLGRGQYGDKSIIEQAEDFLQASHQQPVQYSNPHIIFAFYNSVSSPMAEKLKEMGISVRGDIVAVNSLLDHPEELQPSESESDDEGPELLQVTRVDRENILASVAFPTEIKVDVCKRVNLDITTLITYVSALSYGGCHFIFKEKVLTEQAEQERKEQVLPQLEAFMKDKELFACESAVKDFQSILDTLGGPGERERAAMLIKRINVVPDQPSERALKLVASSKINSRSLTIFGTGDNLKAITMTANSGFVRAANNQGVKFSVFIHQPRALTESKEALATPLPKDCTTDSEH", "sequence_length": 421, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0b47020850832af519775e0c9a4c8577b5d262d8dd765fdc86c8bc5f5feda0ee", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q1LZE8.json", "taxon_id": "9913", "uniprot_accession": "Q1LZE8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1308-pf07000.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07000", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1308-pf07000.yaml" } ], "pfam_ids": [ "PF07000", "PF18474" ], "protein_name": "UPF0415 protein C7orf25 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAYSMLSERIAMAKELIKRAESLSRSKKGGIEGGAKLCSKLKSELKFLQKIESGKVAIKESHLQSTNLTHLKAIVESAENLEEVVSVLRVFGYTDSLGEKQTLVVDVVANGGHTWVKAIGRKAEALHNIWLGRGQYGDKSIIEQAEDFLQASRQQPVQYSNPHIVFAFYNSVSSPMADKLKDMGISVRGDIVAVNSLLNHPEEYLLSESESDDEGQELLQVTRVDLDNVLARVAFPTEIKVDVCRRVNLDITTLITYVSAMSYGGCHFIFKEKVLTEQAEQERKERVLPQLEAFMKDKELFACESAVKDFQSILDTLGGPGERERAAVLIKRINVVPDQPSERALKLVASSKINSRSLTIFGTGDTLKAITMTANSGFVRAANNQGVKFSVFIHQPRALTESKEALAVPLPKARTNDSAH", "sequence_length": 421, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "73385de578a15fbea8101fe69fbc401355e430f915435219338d7d9639adaaa7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5M888.json", "taxon_id": "10116", "uniprot_accession": "Q5M888", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Danio rerio", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5614-pf18474.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18474", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5614-pf18474.yaml" } ], "pfam_ids": [ "PF07000", "PF18474" ], "protein_name": "UPF0415 protein C7orf25 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATYNTLQDRIRVAKELLERVDKICSRQGREVEGRAKLCGKLRAELKFLQKVEAGKVVIKESHLQSTNLTHLKAIVESAESLEKVVSVLHVFAYESPDGQKQTLVVDVVANGGHTWVKSIGRKAEALHNIWQGRGQYGDKSVIRQAEDFLEASQQQPVQYSNPHIIFAFYNGVSSPMADKLKEMGISVRGDIVAVNTIEGGEEEDEEDQEGDHEDLVEEEEDGEDDNDDDSDDTDLMHTRVDRDTIVASLAFPTEVKVDVCNRVNLDITTLITYVSSLSHGNCHFTFKEVVLTEQAAQERQEKVLPRLEEFMKGKELFACQSAVEDFRVILDTLGGPGEKSRAEELLARLKVVPDQPSERTQRLVMSSKVNRRSLMIFGTGDTLRAITMTANSGFVRAAANQGVRFSVFIHQPRALTEGKEWRATPI", "sequence_length": 427, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7a9c7db3475908eaf9614ce5ba9b3cc1e3370bb1828d0a5bddc6360c3110047c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q803H0.json", "taxon_id": "7955", "uniprot_accession": "Q803H0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1308-ipr010733.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010733", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1308-ipr010733.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5614-ipr041076.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041076", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5614-ipr041076.yaml" } ], "pfam_ids": [ "PF07000", "PF18474" ], "protein_name": "UPF0415 protein C7orf25 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAYSMLSDRIVMAKELIKRAESLSRSRKGGIEGGAKLCSKLKAELKFLQKIEAGKVAIKESHLQSTNLTHLKAIVESAENLEEVVSVLRVFGYTDTLGEKQTLVVDVVANGGHTWVKAIGRKAEALHNIWLGRGQYGDKSIIEQAEDFLQASRQQPVQYSNPHIVFAFYNSVSSPMADKLKDMGISVRGDIVAVNSLLNHPEEFQLSESESDDEGQELLQVTRVDRDNVLARVAFPTEIKVDVCKKVNLDITTLITYVSAMSYGGCHFVFKEKVLTEQAEQERKERVLPQLEAFMKDKELFACESAVKDFQSILDTLGGPGERERADVLIKRISVVPDQPSERALRLVASSKINSRSLTIFGTGDTLKAITMTANSGFVRAANNQGVKFSVFIHQPRALTESKEAFAVPLPKDLTDDSAH", "sequence_length": 421, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6533ddaef124af548025f99baff3c75a59a2d6e715d6e59db2dc4ae040a1da26", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91WD4.json", "taxon_id": "10090", "uniprot_accession": "Q91WD4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1308-ipr010733.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR010733", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf1308-ipr010733.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5614-ipr041076.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041076", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5614-ipr041076.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1308-pf07000.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07000", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1308-pf07000.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5614-pf18474.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18474", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5614-pf18474.yaml" } ], "pfam_ids": [ "PF07000", "PF18474" ], "protein_name": "UPF0415 protein C7orf25", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAHSMLCERIAIAKELIKRAESLSRSRKGGIEGGAKLCSKLKAELKFLQKVEAGKVAIKESHLQSTNLTHLRAIVESAENLEEVVSVLHVFGYTDTLGEKQTLVVDVVANGGHTWVKAIGRKAEALHNIWLGRGQYGDKSIIEQAEDFLQASHQQPVQYSNPHIIFAFYNSVSSPMAEKLKEMGISVRGDIVAVNALLDHPEELQPSESESDDEGPELLQVTRVDRENILASVAFPTEIKVDVCKRVNLDITTLITYVSALSYGGCHFIFKEKVLTEQAEQERKEQVLPQLEAFMKDKELFACESAVKDFQSILDTLGGPGERERATVLIKRINVVPDQPSERALRLVASSKINSRSLTIFGTGDTLKAITMTANSGFVRAANNQGVKFSVFIHQPRALTESKEALATPLPKDYTTDSEH", "sequence_length": 421, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b5a8a24ddeea95a76abe8ae03e825b9fae25b0f9531c1c16039e25011674af1d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9BPX7.json", "taxon_id": "9606", "uniprot_accession": "Q9BPX7", "uniprot_release": "2026_03" } ], "pfam_id": "PF18474", "short_name": "DUF5614", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sinorhizobium fredii (strain NBRC 101917 / NGR234)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5615-pf18480.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5615-pf18480.yaml" } ], "pfam_ids": [ "PF18480" ], "protein_name": "Uncharacterized protein y4eN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFLIDECLSPELAKMAIEKGHGETSHVVWMKLGGLKDWELKPIILEGDWTFVTKNSVDFRGPKDKPGTKGQYADVAIHAGLICLNGHPAWTSTCRSSCLSRR", "sequence_length": 103, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f6229ab7a14027b6e2015983eede8944ee9cbf1f40e93fd3dac9f56400960a2b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P55437.json", "taxon_id": "394", "uniprot_accession": "P55437", "uniprot_release": "2026_03" } ], "pfam_id": "PF18480", "short_name": "DUF5615", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf434-ipr007368.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007368", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf434-ipr007368.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5616-ipr041652.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041652", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5616-ipr041652.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5616-pf18481.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18481", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5616-pf18481.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf434-pf04256.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04256", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf434-pf04256.yaml" } ], "pfam_ids": [ "PF04256", "PF18481" ], "protein_name": "Uncharacterized protein MJ0935", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSIEKAKEDFKYLINRGYKKDVALNFVANHYKLSKEDRLKIIRTTHSDKEIKLTKRKLKKLKDFKGKTIYIDGFNVLISLEALIKGNKIVLCDDNIYRDFENVYGKYKINEYSDKAISLLLEILKHYNIKAVIYLDAQVSKSGILAKKIREKMKAFSIEGEVFCVKNCDYELKNKEVVATSDSVIIKSENVKYVVDLIAEAIEYLKKK", "sequence_length": 208, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "879318d2459547bf6ef64cb08ca34cd7ea42a2c62054f2bc45f0a064a95130dd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58345.json", "taxon_id": "243232", "uniprot_accession": "Q58345", "uniprot_release": "2026_03" } ], "pfam_id": "PF18481", "short_name": "DUF5616", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18493", "short_name": "DUF5617", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18498", "short_name": "DUF5618", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5619-pf18505.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18505", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5619-pf18505.yaml" } ], "pfam_ids": [ "PF18505" ], "protein_name": "Uncharacterized protein AF_1514", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEIMDEIKVNLQKEVSLEEAERYAKNIASKYGDGILLSVHDSKTGYRAPEVYCCGEKPWEVYACNRGANLKISVNQFEFYFRIEVEGQAKY", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "51e17236957efd2c2b0570f6fe82b12a0b4954bdf339ee320c4e7997f4fb65a1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O28758.json", "taxon_id": "224325", "uniprot_accession": "O28758", "uniprot_release": "2026_03" } ], "pfam_id": "PF18505", "short_name": "DUF5619", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18522", "short_name": "DUF5620", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18532", "short_name": "DUF5621", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharolobus solfataricus (strain 98/2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5622-pf18533.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18533", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5622-pf18533.yaml" } ], "pfam_ids": [ "PF18533" ], "protein_name": "Large ribosomal subunit protein aL46", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKHGKYVYIDLNNGKYVKVRILKSRDDNSVEKYVLTSHVSKNRPKNAIVIKMDNLPIEVKDKLTRFFL", "sequence_length": 69, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "051652f39524e1b6960662856ed386479c2424b064055172bcbbf1924a36d18e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D0KTR7.json", "taxon_id": "555311", "uniprot_accession": "D0KTR7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5622-pf18533.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18533", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5622-pf18533.yaml" } ], "pfam_ids": [ "PF18533" ], "protein_name": "Large ribosomal subunit protein aL46", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLKHQKYVYVDIGDQKKFLKVRFLKSRSENNNPEAYVILDKISIKLPRNAKVIKYEDLPAEVKDKLKLKLSSSKK", "sequence_length": 75, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cefa888629cb2671480f6834707fb7eb5d4f8d440e8265d9325e40503eeb03d6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4J953.json", "taxon_id": "330779", "uniprot_accession": "Q4J953", "uniprot_release": "2026_03" } ], "pfam_id": "PF18533", "short_name": "DUF5622", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18536", "short_name": "DUF5623", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18538", "short_name": "DUF5624", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18539", "short_name": "DUF5625", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18540", "short_name": "DUF5626", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18620", "short_name": "DUF5627", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18621", "short_name": "Rv3651-like_middle", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18629", "short_name": "DUF5629", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18632", "short_name": "DUF5630", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5631-pf18645.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18645", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5631-pf18645.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5632-pf18646.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18646", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5632-pf18646.yaml" } ], "pfam_ids": [ "PF18645", "PF18646" ], "protein_name": "Uncharacterized protein Rv2082", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGDLPPGRWSALLVGAWWPARPDAPMAGVTYWRKAAQLKRNEANDLRNERSLLAVNQGRTADDLLERYWRGEQRLATIAHQCEVKSDQSEQVADAVNYLRDRLTEIAQSGNQQINQILAGKGPIEAKVAAVNAVIEQSNAMADHVGATAMSNIIDATQRVFDETIGGDAHTWLRDHGVSLDTPARPRPVTAEDMTSMTANSPAGSPFGAAPSAPSHSTTTSGPPTAPTPTSPFGTAPMVLSSSSTSSGPPTAPTPTSPFGTAPMPPGPPPPGTVSPPLPPSAPAVGVGGPSVPAAGMPPAAAAATAPLSPQSLGQSFTTGMTTGTPAAAGAQALSAGALHAATEPLPPPAPPPTTPTVTTPTVATATTAGIPHIPDSAPTPSPAPIAPPTTDNASAMTPIAPMVANGPPASPAPPAAAPAGPLPAYGADLRPPVTTPPATPPTPTGPISGAAVTPSSPAAGGSLMSPVVNKSTAPATTQAQPSNPTPPLASATAAATTGAAAGDTSRRAAEQQRLRRILDTVARQEPGLSWAAGLRDNGQTTLLVTDLASGWIPPHIRLPAHITLLEPAPRRRHATVTDLLGTTTVAAAHHPHGYLSQPDPDTPALTGDRTARIAPTIDELGPTLVETVRRHDTLPPIAQAVVVAATRNYGVPDNETDLLHHKTTEIHQAVLTTYPNHDIATVVDWMLLAAINALIAGDQSGANYHLAWAIAAISTRRSR", "sequence_length": 721, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3db4558d02ded747b831e24a811f406869aa498b704237dae13778d402d2bfff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q10690.json", "taxon_id": "83332", "uniprot_accession": "Q10690", "uniprot_release": "2026_03" } ], "pfam_id": "PF18645", "short_name": "DUF5631", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5631-pf18645.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18645", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5631-pf18645.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5632-pf18646.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18646", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5632-pf18646.yaml" } ], "pfam_ids": [ "PF18645", "PF18646" ], "protein_name": "Uncharacterized protein Rv2082", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGDLPPGRWSALLVGAWWPARPDAPMAGVTYWRKAAQLKRNEANDLRNERSLLAVNQGRTADDLLERYWRGEQRLATIAHQCEVKSDQSEQVADAVNYLRDRLTEIAQSGNQQINQILAGKGPIEAKVAAVNAVIEQSNAMADHVGATAMSNIIDATQRVFDETIGGDAHTWLRDHGVSLDTPARPRPVTAEDMTSMTANSPAGSPFGAAPSAPSHSTTTSGPPTAPTPTSPFGTAPMVLSSSSTSSGPPTAPTPTSPFGTAPMPPGPPPPGTVSPPLPPSAPAVGVGGPSVPAAGMPPAAAAATAPLSPQSLGQSFTTGMTTGTPAAAGAQALSAGALHAATEPLPPPAPPPTTPTVTTPTVATATTAGIPHIPDSAPTPSPAPIAPPTTDNASAMTPIAPMVANGPPASPAPPAAAPAGPLPAYGADLRPPVTTPPATPPTPTGPISGAAVTPSSPAAGGSLMSPVVNKSTAPATTQAQPSNPTPPLASATAAATTGAAAGDTSRRAAEQQRLRRILDTVARQEPGLSWAAGLRDNGQTTLLVTDLASGWIPPHIRLPAHITLLEPAPRRRHATVTDLLGTTTVAAAHHPHGYLSQPDPDTPALTGDRTARIAPTIDELGPTLVETVRRHDTLPPIAQAVVVAATRNYGVPDNETDLLHHKTTEIHQAVLTTYPNHDIATVVDWMLLAAINALIAGDQSGANYHLAWAIAAISTRRSR", "sequence_length": 721, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3db4558d02ded747b831e24a811f406869aa498b704237dae13778d402d2bfff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q10690.json", "taxon_id": "83332", "uniprot_accession": "Q10690", "uniprot_release": "2026_03" } ], "pfam_id": "PF18646", "short_name": "DUF5632", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Finegoldia magna", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ga-like-pf17573.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17573", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ga-like-pf17573.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf5633-pf18656.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf5633-pf18656.yaml" } ], "pfam_ids": [ "PF00746", "PF17573", "PF18656" ], "protein_name": "Peptostreptococcal albumin-binding protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLNKKLLMAALAGAIVVGGGVNTFAADEPGAIKVDKAPEAPSQELKLTKEEAEKALKKEKPIAKERLRRLGITSEFILNQIDKATSREGLESLVQTIKQSYLKDHPIKEEKTEETPKYNNLFDKHELGGLGKDKGPGRFDENGWENNEHGYETRENAEKAAVKALGDKEINKSYTISQGVDGRYYYVLSREEAETPKKPEEKKPEDKRPKMTIDQWLLKNAKEDAIAELKKAGITSDFYFNAINKAKTVEEVNALKNEILKAHAGKEVNPSTPEVTPSVPQNHYHENDYANIGAGEGTKEDGKKENSKEGIKRKTAREEKPGKEEKPAKEDKKENKKKENTDSPNKKKKEKAALPEAGRRKAEILTLAAASLSSVAGAFISLKKRK", "sequence_length": 387, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9f217cf993b0084191cf2352b807957ad921276d74b5b83e6110d937b0b00420", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q51911.json", "taxon_id": "1260", "uniprot_accession": "Q51911", "uniprot_release": "2026_03" } ], "pfam_id": "PF18656", "short_name": "DUF5633", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18672", "short_name": "PilZN1", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18681", "short_name": "DUF5634", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18685", "short_name": "DUF5635", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18686", "short_name": "DUF5636", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18687", "short_name": "DUF5637", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18688", "short_name": "DUF5638", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18690", "short_name": "DUF5639", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18692", "short_name": "DUF5640", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18701", "short_name": "DUF5641", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18702", "short_name": "DUF5642", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18705", "short_name": "DUF5643", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18712", "short_name": "DUF5644", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18713", "short_name": "DUF5645", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18881", "short_name": "DUF5646", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18882", "short_name": "DUF5647", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18885", "short_name": "DUF5648", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18886", "short_name": "DUF5649", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18888", "short_name": "DUF5650", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18892", "short_name": "DUF5651", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18893", "short_name": "DUF5652", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces phage phiC31", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/gp3-like-pf18897.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18897", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/gp3-like-pf18897.yaml" } ], "pfam_ids": [ "PF18897" ], "protein_name": "Recombination directionality factor", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKRSIWAGDEDNKPKKRETYADDTVGRFHSGYSETNERGKVVPVALDKWRISTGEQSVADAVAQLFGGTPVENEESTSENFIDVFTDRPKVPVIIEADGIHWDMKLWLNGKLKHHCDGFDFVSHADEEMIGQPCGCPKLFDERKAAAKEYDAPNPAITVTFTLADDPELGRFKFQTGSWTLFKVLHEAEDDVERVGKGGAVLANLELELVEYTPKRGPMRNKLVSYYKPTITVLKSYNDAIAD", "sequence_length": 244, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "52f7f8389b5243d4bb85a5f5bd41bdfecccfcef408fb05d5a2c3dd69cfd55c0b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9T216.json", "taxon_id": "10719", "uniprot_accession": "Q9T216", "uniprot_release": "2026_03" } ], "pfam_id": "PF18897", "short_name": "Gp3-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18898", "short_name": "DUF5654", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5655-pf18899.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18899", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5655-pf18899.yaml" } ], "pfam_ids": [ "PF18899" ], "protein_name": "Uncharacterized protein HI_1375", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIFTSKKGQLSQLKQQKFKLEKDIQRLFEENLTLLSGYIFIRSEFSIKNSRIDTLAFDPETQAFVIIEYKRQQNSSVVDQGISYLNLMLEYKADFIVEYNEKQKVPLKRNDVDWSQSKVIFVSPAFNDFQIQATNFKDLPIELWEVNRFDNDIITLNIINKSKSAPNIKAVSNEKREEFSILKEIKVYQESDHLADKTDFIQELYEDFKQGILNLDPDIEINTRKLYIAFKKDRNIADIRIQQKNLKIWINLPYGELDDPKNLAKNVSNTGHWGNGDYEITIESTQYLEYIMSLIKQAIKD", "sequence_length": 302, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2bcbb4b4f58cc43216713df1d2c60e25311b745885133ed3f201c4ad35925ff0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P44169.json", "taxon_id": "71421", "uniprot_accession": "P44169", "uniprot_release": "2026_03" } ], "pfam_id": "PF18899", "short_name": "DUF5655", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18900", "short_name": "DUF5656", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18901", "short_name": "DUF5657", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5658-pf18902.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18902", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5658-pf18902.yaml" } ], "pfam_ids": [ "PF18902" ], "protein_name": "Uncharacterized protein AF_1335", 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"Pfam:PF18902", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5658-pf18902.yaml" } ], "pfam_ids": [ "PF18902" ], "protein_name": "Uncharacterized protein C-102a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNLIDIILFYGFQFNDYWTTVLGLRVGAEEKNPIAGLFISSPYRLALFKFGLITIGMFILIYVVRFKTWTEIVLTVTDVVECLVTLNNTLTIRRYKRRGVRG", "sequence_length": 102, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3974dcc8404f8b4b98a130178c4ac167c287e0499874f494fc90e31bff692cef", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P20206.json", "taxon_id": "244589", "uniprot_accession": "P20206", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "His1 virus (isolate Australia/Victoria)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5658-pf18902.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18902", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5658-pf18902.yaml" } ], "pfam_ids": [ "PF18902" ], "protein_name": "Putative transmembrane protein ORF13", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNYWHSAIATFGIGDTVTTIIGLSMAGIYEANPAANTILGELGLFGIIAAKVLYFGLMYIIVKSMPEHSRKYGPITITVLGTLICLWNIAIIATQVLGF", "sequence_length": 99, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "68f33c3a699515c0c7d33ccd1c7b30243670aec81cc82400cffad7c7416ca42d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q25BI2.json", "taxon_id": "654912", "uniprot_accession": "Q25BI2", "uniprot_release": "2026_03" } ], "pfam_id": "PF18902", "short_name": "DUF5658", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18903", "short_name": "DUF5659", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18904", "short_name": "DUF5660", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18905", "short_name": "DUF5661", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18907", "short_name": "DUF5662", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18908", "short_name": "DUF5663", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acinetobacter phage SH-Ab 15497", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/datp-dgtp-pphyd-pf04447.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04447", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/datp-dgtp-pphyd-pf04447.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dgtp-diphyd-n-pf18909.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18909", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dgtp-diphyd-n-pf18909.yaml" } ], "pfam_ids": [ "PF04447", "PF18909" ], "protein_name": "dATP/dGTP diphosphohydrolase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGNKFDQEKVDLHVLDPFFIEGTARVAQFGEQKYGRSNWMQGLTQTRIINAIKRHIAQIEKGEDIDEESGFHHAYHAAWGCQVLAYQHRNGQTHLDDRRWSESVRDADTKIGTCEGISGHTVPCMYEGPFGRLHPVDGEKDGLVMSFVQSEADEGTAQGDPIQQLQQMISEWADQVYPDRTVENALTKMMLHEIPELLHGKAMDPAEFADVAILLFDVAHLQGIDIAQAMREKMEINQARDWKIDPATGLMSHVKPKGMMETIRDAVQGIGDAARIMAAPSRLLNGNNMELAEYTAETLPKPPEKPWEITIPNWALKTEEGTHIKLRAGSGVFGRVKYQSQCILMHKNMRKRSHLETYYCATIKDTVTEDEYNVPWSEIEPWTN", "sequence_length": 385, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "186781cc1f8d95f12c4b9cd1e668868fc6ffc73a21de62bf5b8e77efd6ded1d7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A2H5BHG5.json", "taxon_id": "2060946", "uniprot_accession": "A0A2H5BHG5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Salmonella phage PMBT28", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/datp-dgtp-pphyd-pf04447.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04447", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/datp-dgtp-pphyd-pf04447.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dgtp-diphyd-n-pf18909.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18909", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dgtp-diphyd-n-pf18909.yaml" } ], "pfam_ids": [ "PF04447", "PF18909" ], "protein_name": "dATP/dGTP diphosphohydrolase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGIKFDQGKAPLSLIDPRFTEEVARVLAIGEQKYGRANWQGLKIERLLDAVKRHVLELEKSNDHDDETGLHHAAHAASGLMFIFWLLNNRPTSDDRRWSAAVPGVREQRGSVQPVPDSEEGLDMQPVPAPSPSRSKKRAYSTGTIADVQKLISGWADRTFPDRTIGEAILKLKKELAELDTASYLDAGEFADVAILLLDIAQLAGIDIATAVANKMAINERRVWQRLEDGTHQHVIDGGRTDGVDPIIRVAMLPTDPTGSHLCVVCGQRFGSEDDRASHYTTTHGDRKP", "sequence_length": 290, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "286dd2e3d4172e1c3db4f0da25d201c1134847a1bd540812b6fca2d3eef4d367", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A2L0V161.json", "taxon_id": "2081904", "uniprot_accession": "A0A2L0V161", "uniprot_release": "2026_03" } ], "pfam_id": "PF18909", "short_name": "dGTP_diPhyd_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18910", "short_name": "DUF5665", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium intracellulare", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5666-pf18914.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18914", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5666-pf18914.yaml" } ], "pfam_ids": [ "PF18914" ], "protein_name": "27 kDa lipoprotein antigen", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSASCAVPRLTRFAVFAVAGATALSLSACGSSNKSSSTSTSTSTSTSTVTSAAPSSTPNAEAKVSGLIASVAGNSIQVTKEDNATAAVNFTSATKITEAVPAGLPDVTQGSCLIVKPTEGSAPGQPVTAAKVKISESVNGTCPKPHESTPGGASSTPPSGSPSPAPAKPAWVRGSVASVSGDTINLTGTDASGNTTQTTVTVDDKTKYTKQTTANTEAIAPGKCLSARGTTDSGGALQATSIKLRQAVDGKCGKPKQPGQGG", "sequence_length": 262, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f3f8d26e73b9ddf195854c9dea99f2db0c0b7dec903da6d6e604e9454917317", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q03490.json", "taxon_id": "1767", "uniprot_accession": "Q03490", "uniprot_release": "2026_03" } ], "pfam_id": "PF18914", "short_name": "DUF5666", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18915", "short_name": "DUF5667", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18917", "short_name": "LiaI-LiaF-like_TM1", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18918", "short_name": "DUF5669", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18919", "short_name": "DUF5670", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18920", "short_name": "DUF5671", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18922", "short_name": "DUF5672", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18923", "short_name": "DUF5673", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18924", "short_name": "DUF5674", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18925", "short_name": "DUF5675", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18926", "short_name": 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"canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5679-pf18930.yaml" } ], "pfam_ids": [ "PF18930" ], "protein_name": "Epididymal sperm protein E", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "ARSFSSYCVRCRRKTPSFNSKTVTFRNKRRAIRSHCAYCQVKKFRIIGHGG", "sequence_length": 51, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ec4f0c11979d017defb7501bcfc9849fef8fcf6f129ebba18220f07b6c8c9327", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P80304.json", "taxon_id": "6610", "uniprot_accession": "P80304", "uniprot_release": "2026_03" } ], "pfam_id": "PF18930", "short_name": "DUF5679", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18931", "short_name": "DUF5680", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { 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"MPITKAEAQGVTRAFVRDYPGALELAYKFREDAAELYGPRAAEVPADMKGGYVPKETLHAGRAYRGRVDVPLQNVESASDLLMTLRHEVLGHYGANTFAPGEKRALLDGLAAARNEPTLKPLWDDVNRRYAGQSLDVRAEEVFALHCEGIEPSQHQVADQVQQRGQQSFTETCIARVRPMQADDLHNIVCMVAQGLRDRSRTQQNFPQFNELFRRDENMEPKKPFHEVVAEKLIEQLKAGTAPWQKPWEPGEPNAYLPMNPTTGKRYKGINAIHLMAQGRSDARWMTYKQAAAVGAQVRKGEKGTPVQYWKFSEEQDKLDDSGRPVLDAKGQPVKETVMLERPRVFFATVFNGEQIDGLPPLQPKKEQTWNAVERAEHILKASGATITHAAGDRAFYRPSTDSITLPERGQFPSSDRYYATALHELGHWTGHASRLDRDLAHPFGSEGYAKEELRAEIASMIVGDELGIGHDPGQHAAYVGSWIKALQDEPLEVFRAAADAEKIHDYVLAFEQKQVQEQDQQQSQAQDEAVAQALAVDIAEVLDNPDVSFSHYQAFQGDTLEDALRSRGLETVGSITGTDPEQFYAVAHDRLSPVFGIDPSHTDTDNAYLERKGLAQEFANMAEQLHLAQQLQQHGEQIVSSIDAEARWSDGQRIFAFHDQDGEPHQVRSLDELNNYAPDQLMALPALTQQQAAVADQEANMTPPTIDQAAALLAAHPADAVQGIEQAAAARRQLAAGEIDGQAFADATRQHLGVELPPDWSGELRIVGVAEQDGQTVDAAQAGIEPQAFQVYARKADAQFGEDAFAFVAGTRTEGQAEALAERLHLVDALGTDNQHERAAKLARVQEERVRRDPNATEEDISAAKEARKTAEASAMLNDSDAQRRAAELERQERDRQQAQPQAEKPERQYINVPYKEKDEAKSLGARWDRQQQSWYVPPGTDAAPFAKWAQGAATAAVEPRSAQPAPEAQGEAQKPAQQAQQARQYLAVPYEQRNAAKAAGALWDKAAKSWYVGPRADAAKLERWKPENVQAQQGPAMTPREEFAEAMRSAGLFTGSNAQGDHPIMDGKRHRVPVEGGKKGALDGFYVGHLDGHPAGRIINNKTGTDITWKSKGYALSDQEKAKLQAEAAEKLAQRAVEQDKAQEATAQRVGRQMADLVPIEQPTPYLQAKGIQAQAGVMTDREGQKTYIPAFDAEGKQWTMQYIQEDGTKRFAKDSKKEGCFHPVGGMDALAAAPALVISEGYATAAQVAEAVGHATVAAFDSGNLEAVAKALHAKFPDKPVIIAGDDDRHLVMTHGNNPGREKAEAAAQAVGGKAIFPIFAPAENTYPRDLPAITPDSFKTHLRAEQRLADAAAGKVELAGDEAAKLKASMLSGAQIAALSTMKQHTDFNDLAHKSELGIEGVKRQIGAAISQVQRDEQQHQEQKHVEKKQQQIEQRPRRAARIG", "sequence_length": 1448, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6dcfa74b00f4046a2f3eacc6a35e3c9ee822ae97348034931d911f0ac68f9f9c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P27190.json", "taxon_id": "562", "uniprot_accession": "P27190", "uniprot_release": "2026_03" } ], "pfam_id": "PF18974", "short_name": "DUF5710", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18975", "short_name": "DUF5711", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18976", "short_name": "DUF5712", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18977", "short_name": "DUF5713", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18978", "short_name": "DUF5714", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18979", "short_name": "DUF5715", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18980", "short_name": "DUF5716_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus cereus (strain Q1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/jeta-pf18982.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF18982", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/jeta-pf18982.yaml" } ], "pfam_ids": [ "PF18982" ], "protein_name": "Wadjet protein JetA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKLFECIPENYFNLFAGKNRGFYAEVAFLLYEQFHINRAGILYSLMKDEVQELIETKEELGECIDIEDEIEEKEQDSAGRANEVLRRLKKLKWIDVEVRDQFEEFIVLPVYSSRILAVLKEICENRTIEYQRYCFTTYQLLTGVEAEERPASAILESEKYSEQLYDELTILLHNMKNHMETIAAKDDIQQVLEHHFGEYKKDIIDKSYHRLRTSDHVSRYRNKILERIQTWFLDDKFMKRAAEDAVESGYSANWEEAMDGLSKKMYRVEEIYSNLDEICNQIDARHYQYLRAVLDRSRYLSTYNDSINYKISYILEHIGQMDENILDSSLFRLVQLRQLQEASLLSPRKKKGVYEPEQHEVNEISDEMREELKAENIRRMEKVMNRKKIQKFVLEAMKGRQEIEMSELNLQNEDDALYLIYVYLYGYSKGTGYKLSEEPPEFITQKGYTFSNRTIKREN", "sequence_length": 460, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a5b9530a3fedd172c8074c309dbcea04626fcbbb44d70b5f8e66276170aae29b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B9IS83.json", "taxon_id": "361100", "uniprot_accession": "B9IS83", "uniprot_release": "2026_03" } ], "pfam_id": "PF18982", "short_name": "JetA", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18983", "short_name": "DUF5717", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18984", "short_name": "DUF5717_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18985", "short_name": "DUF5718", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18986", "short_name": "DUF5719", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18987", "short_name": "DUF5720", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18988", "short_name": "DUF5721", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18989", "short_name": "DUF5722", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18990", "short_name": "DUF5723", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18991", "short_name": "DUF5724", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18992", "short_name": "DUF5725", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18996", "short_name": "DUF5726", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18997", "short_name": "DUF5727", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF18999", "short_name": "DUF5728", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19000", "short_name": "DUF5729", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19001", "short_name": "DUF5730", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19002", "short_name": "DUF5731", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19003", "short_name": "DUF5732", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19004", "short_name": "DUF5733", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19005", "short_name": "DUF5734", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19006", "short_name": "DUF5735", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19007", "short_name": "DUF5736", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19008", "short_name": "DUF5737", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19009", "short_name": "DUF5738", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19010", "short_name": "DUF5739", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19011", "short_name": "DUF5740", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19012", "short_name": "DUF5741", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19013", "short_name": "DUF5742", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19014", "short_name": "DUF5743", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19015", "short_name": "DUF5744", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5745-pf19016.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19016", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5745-pf19016.yaml" } ], "pfam_ids": [ "PF19016" ], "protein_name": "Centrosomal protein of 95 kDa", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASSEAEWVTIANNLLFKCHIHLRIHKLQDCDANVFIALYQSILGEKVPDLIVIPRSQEDNAHNVQAVIDSLALDYLQVSLSHITGENIVKGDKGSIKNLLEIFDGLLEYLTEHISESSHNRSASEQFCRDSRGEEPVEELESAKESSWRKVPFMRCSFSPDALGPTWDEEEAESTGEIIRLGDTAHTFSLRSNGAQNSMNFWSRKASTSGIRPPEEMLNPGLSSFLFKNGPTCEEEEAPPIHMATSARKLGEPIRAAIPLHPPYHPPEPRAPCPIGKEYLCSGHYLSTPASGEHRAPSVEPGDVFLTSTLCKDDDQETDLDLTESSKTRRLSKGERSENRAVAPSEYPPFPQKARKRLTEQELHAMSEKLSQRLSELDWMLKTALGDRATGEAHGKDGGAGDEEAHSANEEMLSQHSDSVMEYGPRKPRPGFSMHRKAPYRSHSLSPSSVNKHRQSEKERKKQHKSKGTDTHHFQAKALTEAFERELRKNKVQENVGLRGIREEEEETEKSYKEAFAKGTTKQSQVQKIYSRKTAAPTPKGGLLKSSKASPMKVNEHSLLSLMLEQFPFLYVSDPTLTKMWKQQMAQVEQLRREAQRENRSKKKLQDEIEEALRRHDLLTALVKKEYDHNKRLQDFKDRIHKQRLTQSKIKENRHQSVRARKYYDDYRVQLRAKMMKMRTREEMIFKKLFEEGLQIQKQRLRDLRNYAKEKRSEEKRQHQNELDSMENYYKDQFSLLAEAISQGRQELKARQRSQAQTLHKVKRELRAKMEKEIEQLQHLITQSDDDAFFRELEAERFKARLQLASFQYSKNPFPRGQTP", "sequence_length": 821, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "294b681e215db155939bdd76bb9e5762d32f1369701088ec337942569af7abf5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5XI03.json", "taxon_id": "10116", "uniprot_accession": "Q5XI03", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5745-ipr044039.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR044039", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5745-ipr044039.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5745-pf19016.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19016", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5745-pf19016.yaml" } ], "pfam_ids": [ "PF19016" ], "protein_name": "Centrosomal protein of 95 kDa", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASSEAEWVTIANNLLFKCHIHLRIHELQDCDANVFIALYQSILGEKVPDLIVLPRNQEDEAHNVQAVIDSLALDYLQVSLSHITGENIVKGDNESIRNLLEIFDGLLDYLTEHISESSPNKSETEQYSKDSHGEEAGEDLERTEEAKWRNASFMRCSFSSDTLGPTWDEDEAESTGEIIRLGDTAHTFSQRSNGAQNSKDLRSRKASASPGVEPPEEMLNPGPLGFLSQNGPPCEAASETPPMSMVPSARKLGEPIRAAIPLHPPYHPSEPRAPCPIGKEYLWSSRYLSTPTSGEHMAPSVEPDDAFLTSTLFKDDDQETYLPKPEATRTRKPSKGERDENRAAIPSEHLPFSQKARKPLTEQELHAMSEKLSQRLSELDWMLKTALGDRGTGETDGNDGDGGGEEVRSGNEEMLSQHSDSVMEYGPKKPRPGFSTCRKAPYRSHSLSPSSVNKHRQLEKEKKRQHKSKGTDSCHFQAKALTEAFERELRKHKVQENVGLRGIREEEEEEEETGKSYREVVPKGTSKRSQVQKTYSRKTAAPSPKGDGRLKSSKASPMKVSEHSLLSLMLEQFPFLYVSDPTLTKMWKQQMAQVEQLKREAQRENRSKKKLQDEIEEALRRHDLLTALVKKEYDHNKRLQDFRDRIQRQRLTQSKIKENRHQSVRARKYYDDYRVQLRAKMMKMRTREEMIFKKLFEEGLQIQKQRLRDLRNYAKEKRNEEKRQHQNELDSMENHYKDQFSLLAEAISQERQELKVRQKFQAQTLHKVKRELRAKMEKEIQQLQHMITQNDDDAFFRELEAERFKARLQLASFQYSKNPFPRGQTS", "sequence_length": 827, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dfeb3fcf13bee94a9503f5d4a1c16b723d7a73d231240b53d5d56b42900a59d5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BVV7.json", "taxon_id": "10090", "uniprot_accession": "Q8BVV7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5745-ipr044039.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR044039", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf5745-ipr044039.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5745-pf19016.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19016", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5745-pf19016.yaml" } ], "pfam_ids": [ "PF19016" ], "protein_name": "Centrosomal protein of 95 kDa", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGSDAEWVTIANNLLFKCHIHLRIHELQDCDANVFIALYQSILGEKVPDLIVIPRSQEDDAHNVQAVIDSLALDYLQVSLSHITGENIVKGDKESIKNLLEIFDGLLEYLTERISETSHEKSETEQYFKESDRGERLEEPESTKESKSSWKRVSFGRCSLSSEMLGPSWDGDEAESTGEIIRLGDTAHTFSLRSNGAQCPNEMLSKKALASPSSKSHEDMLYPPSVLSKSRTSFVEDTETLSVSGIPNARKLGEPIRAAIPLHPPYHPSEPRAPCPIGKEYLHSSHCSPAVNSTGEHTEFSGDLDDGLFLISKLPKGSKWEVYPAQVQGPRTRKPPKGKRNENRATASSCNSPFPQRPRKRLTEQELHDVSEKLSQRLSELDWMLKSALGDRIKEKTDHKEENTGNEEVEDGTEETLSQHSDGIVEYGPKKSRPGLSMRRKPPYRSHSLSPSPVNKHKQFHLERKRQRKPRETDVRQFQAQAFTEAFERELRRHKVQENIGPLRIHEKEEETEKIYRGEAVRKGTPECSQPWKIYSRKTTTQSLRGGLPKPNKAVPMKVSEHSLLPLMLEQFPFLYVSGPTLSKMWKQQIAQVEQLKKEACRENRSKKKLQDEIEEALRRHDLLTTLVKKEYEHNKRLQDFKDCIRRQRLTQSKIKENRQQIVRARKYYDDYRVQLCAKMMRMRTREEMIFKKLFEEGLNIQKQRLRDLRNYAKEKRDEQRRRHQDELDSMENYYKDQFSLLAEAISQEHQELKAREKSQAQTLHKVKRELRSKMEKEIQQLQDMITQNDDDVFFRELEAERFRSRLQLASFQYSKSPSL", "sequence_length": 821, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2a697679384a31d8efa05851ef3e040cc9c1abdf5ea7530e7e0e563539a7fcc0", "sequence_version": 1, 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"MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR", "sequence_length": 101, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fcd07594d272c6e3a6944b9ecbfb7bc6092bbb11e529b20551a253c3e91d0fa4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64581.json", "taxon_id": "83333", "uniprot_accession": "P64581", "uniprot_release": "2026_03" } ], "pfam_id": "PF19029", "short_name": "DUF883_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19054", "short_name": "DUF5753", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5754-pf19058.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19058", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5754-pf19058.yaml" } ], "pfam_ids": [ "PF19058" ], "protein_name": "Uncharacterized protein L851", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNSYIREKVDEYRERYDLPDLKVTRSDKEGKRLKAVYTDKDGHRKKIYFGQEGAYTYADGAPDYVRNAYHARASGQYTKKGKQAISIPGSAASLSYNILW", "sequence_length": 100, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bb5cffd8f3eb27e5c93a41b6c87ed91a9d1927d20b13ee1d348f484f870a439e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UP30.json", "taxon_id": "212035", "uniprot_accession": "Q5UP30", "uniprot_release": "2026_03" } ], "pfam_id": "PF19058", "short_name": "DUF5754", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19059", "short_name": "DUF5755", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hematodinium sp", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/dvnp-pf19060.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19060", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/dvnp-pf19060.yaml" } ], "pfam_ids": [ "PF19060" ], "protein_name": "Dinoflagellate viral nucleoprotein 5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAMKKAMKVKKSAKKSAKKSGKKGGMKKKAKRVSKVARGKRAKSSVFRGTKERTSGGLTKNSLVKNKQGRVVSKKQSEHGKKIFKKHGLQKWIDAVTKARKALGIKGFQAVGGSSAKGKILLAKSRSFYKK", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5885a809b0fa9055b4be65b5da82e48fbc91da2f90ed3d72e82d82613ea2b523", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/K9NVA6.json", "taxon_id": "173654", "uniprot_accession": "K9NVA6", "uniprot_release": "2026_03" } ], "pfam_id": "PF19060", "short_name": "DVNP", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Trichoplusia ni ascovirus 2c", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5757-pf19061.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19061", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5757-pf19061.yaml" } ], "pfam_ids": [ "PF19061" ], "protein_name": "Structural protein ORF43", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIKRNGYNEYISMSSNSSPLLLYDIISLTNGSNDNEIIINFRSHVLNSNIIELLSGAAPHYFDVRNILVRNMESQKIGASFTINSITFVSEYMQYFVLNGNENLPNVYIDERGVVAYRKVWRRFTLGSPMFVFDYDGKLVKFTIAVERAKEGITVSSILHTRVRILDANSEDDIAFISEAIVTMMIYYKNSELEISQYYAENLYDELPRVRVLRDSKRIRNKTARRIRTTSINDIRTVIPVNNYARQCNRLPMLVDSIDDVPTELRGNTIKFPLHGEGGIDKPKYVYCRYSDAPYPGMMVNNLAGASKKFPYLPCCYKTSQEVKDVNLAYSRDVMPEVSSVAPNRVQIYFNTQRLLPCNSFGRSPMCIEKFITGINYFDDRLHDDDDNDSVSEYYPTISKVTDDVNASTYYCIRGGVQKGPNSIIEAVLRSLQYLDGRDPRTLSITDSILNSERLKLRDCINVSAQELYDIPFDKRLDILSSTQTYLDGFRFVKALQYQYDVNIYIYSRNCGPVTRFIYNHNEISLKFEDNDNINKQQQQQRERNDDDDDDDDSTLVLPYHNKSSAYIDTKIHRKSIVIYIHHGTEATTNATGYPHVEYIMFRKHKKVVEKLWDVYKAMLPVNITNVYGLSYYEADNDDINETISKRVAENCRKKLYVSTGKLLKLVGENNDGDDDDSFIPKLQVLDRLGKCVQLDEYRISSLSDFIEPLPLPIVNENMFYNNPSCLTQCYGFDAAFKVDRLSRLLLYITLYEMTLTGSITSVYFTINRQRFSELICDSGCVGKLLNNGCVTLQKYTHHLVSRTTTTTTTISPSISQEDHENNIDDSNITYILVDSSDTAKRLKYNATLLIKRMTAKEIDNLKLSTHVLPLLRYERDFALSNTSHDNMVVVTSMDKFTTKSFDHRYIYKIPSTIIPNIGESLVLITNESKEQTELVTVTSIENFTRIHDHYENSDAIQFKCVVNVWSGASTWKKSV", "sequence_length": 977, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f5a9628ec0918f81a96d0dacefc58ebb8882f5b1364e35ec5694768562d0e373", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q06VN8.json", "taxon_id": "328615", "uniprot_accession": "Q06VN8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5757-pf19061.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19061", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5757-pf19061.yaml" } ], "pfam_ids": [ "PF19061" ], "protein_name": "Uncharacterized protein 016R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFTVNKKPVVYSTRDGAEVLKGKISLVLKTLPSLFVLPPTPIQDGSDYTITPMIFVENGQLRLGQPQVPFSDQLELIKDEPNQLEVDFLKKLYIISKIQSTINDFEMQPDMGKNFALFELETEFGSVDETVWYNRLFDVQKFQQMVEENAAEVTLESRTTDLWAGVTPSFTPTAFVTNKINLETEIPNLRQESELMVFDTIRVNATVVACFYQDLIKYNQDFNPWIKDYLAQDKLLTKKLRASDIIRLMIAGTTPRKKYKMINVYVYPETISFTVEMLLNFDSTNGADNLKKLIKTIIVDMGKEDAYDQRVEKEYYYGSYSAPINVPIFVVKDLLTNDSNVYNIAYINESALINTRRSNLNLFLKNSSKDLKQHVGVSLFERPDTVGTFVRLKKIRGGAELQTTIDTSMGVVNKLLQYSVGKVAQVFNYYQTYINIVANLDPTVDLNREKENLLKVQAPEIFLPNYTRLCNKPPVIIEGEPQPEDGTILKFPIYGEAEPRYYKCPYPNYPHPGLRRNTTLGNRDTFPYVPCCYQRPQSMNKNYNTYYNQAVYEQRINSGEIGKTLKILAPKRIGELPPRINKLLSYSTKLKFYRYGFKTSLYSVLDVLNTATGSAATIEAVRRELSTRVELCKGEISSLQTGEIAEKIMDPATYVNPRLFKRALEDYYNLSIILFSKDQDDFSVYANKFLKFICPLRKRVVFMIEHEQAQHVELVLDEETLGHVNKQGSRPILTWDRNDFPVKKLFALYKDRFTHTLYDIGAKRFVSIHNLLMESSLTGTALEGLKRNTFHVYPWETISPNGKIVKSVQPLNQYTDSYGQTRLVEFRWKELRFVSEFQPLPCLAIAQVPEADPNHYTKPLEYFIQVNDKLTEEERATIREAFAWCNLYRTPLVSDADYRSPYYEFRRVKKLAQYILWAACHAYAQTYQTRPLSVMEWIDQDTRVDPNFSYSRVTISPLFNLDQFTVDSKFIFNSVQLQERVMFNLRLISTVNLKVYAANVYHAFYQDVTNFTVPYPAQLALSKTEYYQRTREPLIVQVLSDENVPYLRAGTLYVLENLFGIYSGNLCLFELSLEKLFEKSEQLFQQAVPPNTRVNIVLFNQGVPEYYVLGQNAPELDVIILNINNLWFYGLLRPKLTDM", "sequence_length": 1139, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87aed82f9ec1ccdfad221223538a244cd34e7e9c3eff0fd58c1106bf493dd1dc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q197E4.json", "taxon_id": "345201", "uniprot_accession": "Q197E4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 6", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5757-pf19061.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19061", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5757-pf19061.yaml" } ], "pfam_ids": [ "PF19061" ], "protein_name": "Uncharacterized protein 295L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLLNGKSFKIYDYDTQRTVIERIASVLRTIPKYLWYVNDAGNTKYTEEPNFIEETPNSITVINVILDIETQLLQSLSEFESRYSDWFIQSGNTGNSTEEESKEDLLKWFVIDFIRKNKNEGISEEHSILLLEEELKEGVGGREFDLNFPKKIWSDRSQIEKDYNKNVKENRTLSAQNEKRFKDLDKMPKASEEFSKFVVEKIKVSFTVTNYQTSMLSLFNIIDINKVEDSENSLFRIVTVTTANFFKINGLIDISEYKRIDPSQLIENSSSCIDNVLNIIIMNEPKQKREGKQSKRPEFIDITVKPNNESLLIEFDLSISIYNSEEDRNILKNYLIETLFPQNLGENLGENLGENLGGSQSLTPRFPEGKRRSQFPELKVGPTLENKVKGSYYIINRYFQKEIFLDMIMNDPDFSILYVDERFKVSKQQSRLYVYFVTTKTGVVAFSLLNQVILTENDPLFKIKTPDGKKLKVKVGTQYIKIRISSIENKLNIPFFQDHLNRLFSLYFKKYNSILQFYNLYIKITPGGLGIQDQQDINLNIDEPRINVPPRKKIGENTLAAQVPELFLPLYSRKCARAPRIVSEEEALELNQNNFQTIRFPIHSEGNLEPKIYACDHHKEHPYPGLKPNDLANKDTFKYLPCCYKTNPEHKRGSPYGNYYKGEALTKDMTDHELYKTPRIVPNKVFGILPTSIAKIFGKISQREIDEENDTTNYYRYGTMYGINSFIDAVARAIGNNQFENIYNERQTYISEIRKKMASESYIGLSRQETYDLNIEVVKKWIKSDQYFDPKRFLKIVEDYFDVTIFLFERNVGESIISKQEDDNFTITIDQISETVQKYGSGGQLSLPIHSTIGSYILRPLKNNIVFIYIHMGSEVDKVLYPQCETIIKYVTEQEPGRKKGTVKSLFHKHDHEVEVIKTLFDKLLLSYTSIMSGPNIPFTYEPINMILKDGYGLVLKEQFIDKSGKTRMLYASWVPKSSKTTLKEMLNEPAYFTIVTEPIHPLRLPIKQNKNKNENENLCIPLTDFHSLKTPIANHFEISPITNALVDDLMKIYNLNYKKASFKDYLCNASDYLKGQINGIKVRIYVSNSIEEMRRNDSTLLKYNKQRKISRILFEYVLYKFSQYIKSHNEYSKKEIFETFLLEKCLVDNSFIYKINQNFNVPFFTLFDNMFMVDSKIIFSSQNLMIRIMYNIYQLTVRKFNKVKELSNQTIMNTYFENLSDFNHNDNFFIVYGLNTFLRFVSETKQGELLLNTLQPFDGPRFFSSDDIEDGKIFSAFCYGSIDTAISNQLSDKDIDKTENGIIYIFDTINGYKAYQINYKGVKIVAFKVEDGDYYLTLKKTI", "sequence_length": 1343, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "649c31c703792cba3350f831248369389bdfe106ac75813a3d61ec577c9923fa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91FM9.json", "taxon_id": "176652", "uniprot_accession": "Q91FM9", "uniprot_release": "2026_03" } ], "pfam_id": "PF19061", "short_name": "DUF5757", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5758-pf19062.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19062", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5758-pf19062.yaml" } ], "pfam_ids": [ "PF19062" ], "protein_name": "Uncharacterized protein L223", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTKKFIGKEDFANLQKNKSGIYISNDYITVYKKVYCKNRLYNSRTSFDSEESVHDIFNPESIVELEIPPGAIIVKPVSNNYTKMNKMRTNKAIVNKITRLIDNKQIDDSYVCYSTYDPSFRYKVGSTVGTRLDTNVNKTNVSGIHFFKDQKEAENY", "sequence_length": 156, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b6e2d664e8e3a7757ce3123abbda07d58899c0196d07e863ff158986abab1e9a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQB8.json", "taxon_id": "212035", "uniprot_accession": "Q5UQB8", "uniprot_release": "2026_03" } ], "pfam_id": "PF19062", "short_name": "DUF5758", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5759-pf19063.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19063", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5759-pf19063.yaml" } ], "pfam_ids": [ "PF19063" ], "protein_name": "Uncharacterized protein R447", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLNDDDLYKKHDQLVNLKRQTYEKIFNRCVNTIKLSSDAGELICLFQIPNFLFGTGYPIVNIKYCANYIINKLSEMNENIETTFIDPNILFIDWRKKPNKQPKTTHHFSTNSSEYKSRKSKH", "sequence_length": 123, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2662bd75c4ca7a27e93ebe7451da62c84abad69298e75d05da24c597cb93edec", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQP1.json", "taxon_id": "212035", "uniprot_accession": "Q5UQP1", "uniprot_release": "2026_03" } ], "pfam_id": "PF19063", "short_name": "DUF5759", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5760-pf19064.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19064", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5760-pf19064.yaml" } ], "pfam_ids": [ "PF19064" ], "protein_name": "Uncharacterized protein L491", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRTSSQNQEIINNKHRLKTSKSSKPSKSSKPSKSSKPSKSSKTSKSSRSSGSKSSRSKTGKTSSRKDKYKEEYSQDQYPDEQEYEQEYEQEYEQEYQDNGEQTEEFVENNQDAYPEDIENDERQTQSNKELDTINKKTKERLKNKINKWMDHDDNIKRLNAKMKAFKDAKKQEEESIIKLIDKFEIGESKMDIRDDNKNLRGRVYKHKSVTKGAIKEDIIRDALMEVVRNERKVAELVKKIESKRPINERYYLKRTKGNN", "sequence_length": 261, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87b754b944a7971336a44c511ea9f2b6fb73ad02c64f757b73d4bb542cd166c6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQF5.json", "taxon_id": "212035", "uniprot_accession": "Q5UQF5", "uniprot_release": "2026_03" } ], "pfam_id": "PF19064", "short_name": "DUF5760", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19065", "short_name": "P8_CR", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19066", "short_name": "P9_TM", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19067", "short_name": "DUF5763", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5764-pf19068.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19068", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5764-pf19068.yaml" } ], "pfam_ids": [ "PF19068" ], "protein_name": "Uncharacterized protein L417", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAMNSTLFLEIKNEYTEHLVDVLTPYIYEGLLAIYSRACEIADESKKSNKILSIFQKLLQSIDEWNQSRIDDETNRIKMTGQTQEYLDDLVKAVIRSNIILLSCNNNISQAICQNFYNGLSTSALIHRCYAECGKDAHNNPYLFFHGVEPLDYKRNQVIIQDHVRMGITRAIRKILPISMILKEYLVNSMNLFPDPNRTNPLFPAQSINNAINNPFQLPSPMQMPGQPTQIVQPVQAVQSMQQFQPFQIEQPMGSQMMGFGTNITAPETKNQIEQEIFNVIKSENVGQNPQKIKAIMNIEKIITSAEPNQIADFAAKTTSARDPMNLPQANPIGFQNNQFNQQKKLYQHPQHNQYNQIGSQGQNRDYRQNNSNHSNNSNHSNHVDRTDRTNQSTYTNQTNLTNQSNRSNYSNNKNYYNSKSRTGDYSEINKNSKQGHFEQSQNYSKDTESMFITPANGQNKLGTGGNIDLEKIDFNNINLIEDYGVKHSHE", "sequence_length": 491, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4902a3eac9c0b03c999336cdd353c0ff4dfc147fe5a656630d7f08a5afbee6c9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQL4.json", "taxon_id": "212035", "uniprot_accession": "Q5UQL4", "uniprot_release": "2026_03" } ], "pfam_id": "PF19068", "short_name": "DUF5764", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5765-pf19069.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19069", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5765-pf19069.yaml" } ], "pfam_ids": [ "PF19069" ], "protein_name": "Uncharacterized protein R287", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCWNYQVSLIFSVIYVVTNSYYVVKRPLYWKQYLLFGSFYLTMEVFQTLQWLFGNVYSDSMYGQSVCNSINVNYTIVAFILIWLQPILFSVIGYQTTTTNKWFFRVLTVLNCFVFFYGLKLLYGGFEKPDYYTISDSMFGSSTCTNEGETGHLVWRFKPKTLDVFPNHLTYIILCIISFVMYENNATRVIGLGWLLSLIVTKLLLAPTLVEIASSWCLLSIIANLLIVAYVHISTGIYLTGQ", "sequence_length": 242, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f398eb64745b04707cf8f7c015f63407f55d5032b471b40d6af4b9da8c7b49e4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UPW0.json", "taxon_id": "212035", "uniprot_accession": "Q5UPW0", "uniprot_release": "2026_03" } ], "pfam_id": "PF19069", "short_name": "DUF5765", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19070", "short_name": "DUF5766", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 6", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5767-pf19071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5767-pf19071.yaml" } ], "pfam_ids": [ "PF19071" ], "protein_name": "Uncharacterized protein 067R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTIIIRKIPPIDDFKRFVPKRFSRFPQLYLELLENKNKVKLNCIGKEFVPTTPPLSTGRETIVSKDPHVVQSSISNTPIRTEIKDTPRYEETPIKRTITVTNVKTVKSSSISGMNGRNRLYDDDLFDDDRYKSPTTRKFQGEKRDEDIRLIPKSSNIGSSKYKPVLTRVEENENKKIHIDQRKESIVNDERKKNPEFREKPDKNEDKKVKPPPSLKEIENKGIDHEENEEDKKRELMFKLQLLQKQYPLRDIPDFTIRSEYKSMKKTYDIIVKQLSVDSSVETYKNYLVGGFMVCEMVFGRIGFDMEGFTQQQLLSMNSYEKLLLELGEKTYTPAGMDKWPVEVRLALAILFNAVWFIAAKMIMKKTKINILSLFNNTKGLNKSGTTPNSVSPRTWGNSKSPQSEFNFIGRKNENNSVGRTQMKGPSINRIDEGFGSESDESRREMREQGIETLK", "sequence_length": 456, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3c5df77a5c4d7a053f2c2307648b73055d2bac9f92e438c02aa2bb69fdd4a219", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O55708.json", "taxon_id": "176652", "uniprot_accession": "O55708", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5767-pf19071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5767-pf19071.yaml" } ], "pfam_ids": [ "PF19071" ], "protein_name": "Uncharacterized protein 004R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPPKNNQITYNIFKVDHRFALPRVRPKFPKFSELYLELLVNRSKVDPQLMNEPYVHRYDPVVSSGESMVNPVPPADDGRMVATTLKAVPRLSSVPNPSPAKPTQKPTISRESFVWESSASIDPSPRVQKKSRGRPASSTPSIEPESISRYRQVKRSIISSYYKQVGEGAPSTTRRAADSENERRPSEVREAPESRRRRETSETGSDKSKAPPPIKEIKKTFGNEENPLINVFEDYPQAKDEDDHKRELLFKFKRLRQTYPKVDIPDFTMLSNHETMKRTYDSTLRNLSIDSTVENYKSYLMMGFMACEMVLGKIGFDMEGYTQQQTLHMNKYEKLLVELGEKSYVPNSVNKWPVEVRLIGLMLFQTTIFIISKIIAKKTNVNLLQIYNNFSGLNEPPKVTRNGSSSGFASGTSSPLVFIPRTKRPSLVPSEKKMRGPSVTRDLAAEQERDA", "sequence_length": 451, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c5b970315887de0639968c0417c6a65d293a71f0ff96ff2203586c120e2284a2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q197F6.json", "taxon_id": "345201", "uniprot_accession": "Q197F6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5767-pf19071.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19071", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5767-pf19071.yaml" } ], "pfam_ids": [ "PF19071" ], "protein_name": "Uncharacterized protein R449", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNMSKGNLKTDKNTDYLFRYFMNEDKLNEQLRTELDREMDEKIKANKNFRLDTRIGTERNKSVTKKPNINGGNVNNANGANNNSSEETELPSNSENSDKPNVDFNDSDSDSSNQDSVTASDGFNGSKSPYKNKINAVPGSILPVNTFGQFPGLNQNFQQDSGQNFNQSPVARNTYTAPQPALGDRLIGDIEKYIETPEEKRARAREAYAKLEELVENYSVQLSRTYTIDDDPNELEAEYQMQKDKRSKKTQVQFYKQILLNIVCGAEYLNETYDPFKIKLKDWSKQMASDMDNYTEVLGEIYEKYRDRGGKMAPEIKLLFMIIMSGVTFHLSQKLFGQGGLSDVVGNNPNVINQLLGGLMKGGMGNMLGGDEPVEAKVTPKNNKSILEAIKKYNNKGTSESKSESRSDYKSESVNSVSTEKSDKQSETIKKITEANEIVAKERERRLMAEQRAEMEAQLRRQSEQHAAEMEQMRNQYLNSIGQLSTTRPVDNYSQPSINDNYVNTPTKINNSVNLVLSDATKKPRFLNNQKVANSPIISNKPLNTRDIGFGDFFGNETDMNKESSKKSGRLNIGGFDNLDSLDSTNSIDSEDDDIVSDINDFFASNKPTKSPKQPVSATKSTTKKRPNSITRSATRSVGRKKGTETSDLITPRKPKIIDL", "sequence_length": 661, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "245ee17e35f184730cd1acf6d33c499298f3c422d88aeb060be293a2b250286b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQN9.json", "taxon_id": "212035", "uniprot_accession": "Q5UQN9", "uniprot_release": "2026_03" } ], "pfam_id": "PF19071", "short_name": "DUF5767", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19072", "short_name": "DUF5768", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5769-pf19073.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19073", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5769-pf19073.yaml" } ], "pfam_ids": [ "PF19073" ], "protein_name": "Uncharacterized protein L685", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQFMTISNDNKIVLSIPMLSTLSLNCLVKITGSISQSKQLLVENNLLLSNFEIIYNNLVSIKRQIIYKDIFDKMFSYKLRKHPISLNSFYKDNIFYLKGMYLANLFSDKVSKNINSKCIFGMNSISDIIINMRTQKITHRNPKVLCKKINKLNKYTVDEVVEKGEIFEQSVNYIIIKDKYHPEFFVKIKFETNYIYDFFDIECLEYSCNIGDKDLKVIPKITNPNLSVGKVIDNCRNKKFRILSIGKPIIKHDCTNIIVDENGYVSGSMKNCIDRYSCYGNYILRKYRKLINDGWQCLNEVCDNPVCILAQEDFAEKMYKLRKSYDESVPQLEEVNE", "sequence_length": 337, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1003df19a73e1bc8dc549d40e0c3fcc9e87f2f038887a98f57e8a1ac3dcd92a0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UNU4.json", "taxon_id": "212035", "uniprot_accession": "Q5UNU4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5769-pf19073.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19073", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5769-pf19073.yaml" } ], "pfam_ids": [ "PF19073" ], "protein_name": "Uncharacterized protein R69", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSSYCNPNEPIPREIPSLKAHIFEYMYQYRNWSKFVGDVKKNHGSIDDLEFTITEFKHVHYMNVARVIVHGVEKFNKCCDNINNNDINLDCELTKNIQKHFQGCSEKIPQIYIYGNFCRSIVSGQLYDNINIMFHDDKCSEMFRQFCIPKNYICRNLQWNWSKGNVRGIDYELNFKGYNDYKVHLFLSWCNDMNIVPDNIYFDVDSLYSTISHENIHFMSSLKSLYPDCNVDKIIKNCTNNKFILLDNTKSPTITHPQPFVFSRNIHLKCINVNKEQHIKFLFLKMKSKGWKCLNEDCETPWCILQKDLLH", "sequence_length": 312, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "21015add753b7ae4e85f4bdee9961ddab2f3ff02680c39a8364d6e7daeb806e4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UPE6.json", "taxon_id": "212035", "uniprot_accession": "Q5UPE6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5769-pf19073.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19073", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5769-pf19073.yaml" } ], "pfam_ids": [ "PF19073" ], "protein_name": "Uncharacterized protein R651", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESGEHDSETMYEPYIPPIINKVNTILRSHCRQCVLDLIFKKIKEENVHCYGDYVRYMLIGYDSNRIRVRFKSEFQATFFRKQLEIYLSVKNYGDYEDSNCSTMRVRPKYSNKYFRNFILSNEYIMKLFEQIHQSRTSYLLNKLRKQFKKTRFYLEFYYETSLNYTNYEYIPVNCDFDVDTLMVDKQIYEKPNPEDFIVINPKCKVENVINNINNMQFIILTKNGSPLIQHYSEDIVTGNYDDDYYKFYLDELMGRSHCIDRYSASGKRILSRKEIMEDEGWVCINLPCPNQNCVLFENTIGICCDNDETVSSNSLNMVNFGPDDKNSATNPTHLSKESQNNSESNSESITESPLNSFIQRSGNREDSEISQDNDTVQIDKSTSSDSVHNYFDNSVDNSVHDSVHDSVDTIGQTRRDNASTNRPLYSEYDNFLRTTMDTIKTVYQKKIFDGDSDKIKHSRFSVNQIYDRVEYTDNHDCHDHHDSEISTNNIFG", "sequence_length": 493, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5537769004190f3c4922f96d26a131a66a8e7057ccbfa981a9523332019e5832", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UR06.json", "taxon_id": "212035", "uniprot_accession": "Q5UR06", "uniprot_release": "2026_03" } ], "pfam_id": "PF19073", "short_name": "DUF5769", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Frog virus 3 (isolate Goorha)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5770-pf19074.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19074", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5770-pf19074.yaml" } ], "pfam_ids": [ "PF19074" ], "protein_name": "Uncharacterized protein 045L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDDVEYRTEFSARERAGGDIEEGLELFGPATFKGMEGDPVQRFYNGIESAGRNLIRDGHIKLNKQEQTRLLSSVLRITYPNYKNPMGTVLGFYVTDGGRGPIDKGRLSHVQSFMEEVTDMDLRDLIRYCRLWLALK", "sequence_length": 136, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "91b655020eb30a427040b73f976ab313c4371db22a944478cc532a2744c5089e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6GZT1.json", "taxon_id": "654924", "uniprot_accession": "Q6GZT1", "uniprot_release": "2026_03" } ], "pfam_id": "PF19074", "short_name": "DUF5770", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19075", "short_name": "DUF5771", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5772-pf19080.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19080", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5772-pf19080.yaml" } ], "pfam_ids": [ "PF19080" ], "protein_name": "Transmembrane protein 066L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVTTASGQWTFPVLFATLLVGSALVFPVGGLVWSAIASLAIAYLYYLVVEQHPHVGFALQLLALVVVARAKSWWRQACSGSWLASIVRRRKPTLTVDEYRSTLTYWDPVNKKWYIYTFAHGQRSTDLLIFRDENKRDVTPLVEPLLGPLQNFHGASPTPADLGFARLHVFRDGETSYQRQFDRHEPLVLTPH", "sequence_length": 193, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d10de3995ffc384482bea56b29c6b65bfebbfc6fffc7e946a1947d3efd807b52", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q196Z4.json", "taxon_id": "345201", "uniprot_accession": "Q196Z4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 6", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5772-pf19080.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19080", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5772-pf19080.yaml" } ], "pfam_ids": [ "PF19080" ], "protein_name": "Uncharacterized protein 373L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIEIIISTIFILYILLTKYKYETLKVIRTLMKNYKEIPLQNITLSENNEVTVEDKRIKIVTITIHGNKHMVKYKFNNKLFTALLPCTESEYQFHITTKNGIDVTENVIKFMGPNYDFYGVKIKVNEIGYDSLMFHRPGKEPTILKSDDYLPNNLSDYQWDFSLVGLNQNISPPPVGEETASNTVEENTMENILKETKNLSQNILIQKKTSISGYKTLDVKRKFVKRKFVKRINLNYSFLILLN", "sequence_length": 243, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "905e1fbe44068cf3a326dbba4c42d9cc8dd33dd3b21c40d6191efcf296b113a9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91FF1.json", "taxon_id": "176652", "uniprot_accession": "Q91FF1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 6", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5772-pf19080.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19080", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5772-pf19080.yaml" } ], "pfam_ids": [ "PF19080" ], "protein_name": "Uncharacterized protein 357R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MILILTIIVGFLIYFVTAKRFKLKRLILSICFKTIYNVFKKWWLKFSEEGLKTIVFKRLSKFLKQPYYCNNNVVEYEFHNKKYKLMVNQSLIKKPSYFILNCKEGTGKKEDITLKLQPWIGPEHNFHNTLIKPSDLGYKKLIVVFSIGNKVVVNENDFLPTKLT", "sequence_length": 164, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "287da3a8c6d1b8b3d708cdab8fde60558417b5629f358b656169ef5ac4628007", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91FG7.json", "taxon_id": "176652", "uniprot_accession": "Q91FG7", "uniprot_release": "2026_03" } ], "pfam_id": "PF19080", "short_name": "DUF5772", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19082", "short_name": "DUF5773", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19083", "short_name": "DUF5774", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19084", "short_name": "DUF5775", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus phage SPP1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5776-pf19087.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5776-pf19087.yaml" } ], "pfam_ids": [ "PF01520", "PF19087" ], "protein_name": "Endolysin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKLVWLDAGHGGKDSGAAANGIKEKDIVLKIVKKVKSILTSRYEVAVKLTRDSDVFYELIDRARKANAAKADLFVSVHINATPGGKGFETYRYVKTSASSSTGQQQKVLHDAIYKRIKKYGIKDRGEKAADLSVLRNTSMPAVLTENLFIDNKDEAALLKKDSFLNDVAEGHAEGIAEILNLKKKSGGSAPKKEDKPSSGKTKMVIVKDNPDGFLWVYNKADWNARYKKVKPDEAFTIDKTVTVNGSKMYKLKSGLYITAASKYVTVKEK", "sequence_length": 271, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c2ad0fb92ca86f51bbace41c370d82a8fa2d12a1919e008c0a32c1ca62322fdc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O48471.json", "taxon_id": "10724", "uniprot_accession": "O48471", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Listeria phage A118", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5776-pf19087.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5776-pf19087.yaml" } ], "pfam_ids": [ "PF13539", "PF19087" ], "protein_name": "L-alanyl-D-glutamate peptidase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSYYYSRSLANVNKLADNTKAAARKLLDWSESNGIEVLIYETIRTKEQQAANVNSGASQTMRSYHLVGQALDFVMAKGKTVDWGAYRSDKGKKFVAKAKSLGFEWGGDWSGFVDNPHLQFNYKGYGTDTFGKGASTSNSSKPSADTNTNSLGLVDYMNLNKLDSSFANRKKLATSYGIKNYSGTATQNTTLLAKLKAGKPHTPASKNTYYTENPRKVKTLVQCDLYKSVDFTTKNQTGGTFPPGTVFTISGMGKTKGGTPRLKTKSGYYLTANTKFVKKI", "sequence_length": 281, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ac4001d39c4939de5891f04b1987c84c773d9f66982e2adf9704c32825899140", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q37976.json", "taxon_id": "40521", "uniprot_accession": "Q37976", "uniprot_release": "2026_03" } ], "pfam_id": "PF19087", "short_name": "DUF5776", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19089", "short_name": "DUF5777", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19090", "short_name": "DUF5778", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19091", "short_name": "DUF5779", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19092", "short_name": "DUF5780", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19093", "short_name": "DUF5781", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/emc6-arch-pf19094.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19094", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/emc6-arch-pf19094.yaml" } ], "pfam_ids": [ "PF19094" ], "protein_name": "Uncharacterized protein MJ0606", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLEGKCCLIHAIGGIIFGYLANYVYTAGLGIFSGIATLIFLFIGAVIFGHISAKTFGEESLTQKQWLGCGVLPFFLVAIVVWVLKFNGLI", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9871505e854b74f013af94df4e19b39269701b548f1c388229e5a71a95113dec", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58023.json", "taxon_id": "243232", "uniprot_accession": "Q58023", "uniprot_release": "2026_03" } ], "pfam_id": "PF19094", "short_name": "EMC6_arch", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19095", "short_name": "DUF5783", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19096", "short_name": "DUF5784", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19098", "short_name": "DUF5785", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19099", "short_name": "DUF5786", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19100", "short_name": "DUF5787", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19101", "short_name": "DUF5788", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5789-pf19102.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19102", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5789-pf19102.yaml" } ], "pfam_ids": [ "PF19102" ], "protein_name": "Protein VNG_0358C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDDNDEDAPAVELGEGARVAGAPIARVASRLTWALQKSEVVRKEGDTVVRTPDGPRDLDAVLEDVSTPYFETRREFERDVRAAMGAGPVPTE", "sequence_length": 93, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2571bbe2fd0b7339daba2da6e19c4791ab62b1fe0747ba0e240ea6453fc0af79", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P84699.json", "taxon_id": "64091", "uniprot_accession": "P84699", "uniprot_release": "2026_03" } ], "pfam_id": "PF19102", "short_name": "DUF5789", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19103", "short_name": "DUF5790", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19104", "short_name": "DUF5791", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19105", "short_name": "DUF5792", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19106", "short_name": "DUF5793", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19107", "short_name": "DUF5794", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19108", "short_name": "DUF5795", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19109", "short_name": "DUF5796", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19110", "short_name": "DUF5797", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19111", "short_name": "DUF5798", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19113", "short_name": "DUF5799", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19115", "short_name": "DUF5800", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19116", "short_name": "DUF5801", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19118", "short_name": "DUF5802", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19119", "short_name": "DUF5803", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19120", "short_name": "DUF5804", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19121", "short_name": "DUF5805", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19122", "short_name": "DUF5806", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19123", "short_name": "DUF5807", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19124", "short_name": "DUF5808", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19125", "short_name": "DUF5809", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19126", "short_name": "DUF5810", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19128", "short_name": "DUF5811", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19129", "short_name": "DUF5812", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19130", "short_name": "DUF5813", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5814-pf19131.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19131", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5814-pf19131.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF19131" ], "protein_name": "Probable ATP-dependent helicase MJ1401", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLIVRKPKKKKDEIEIVKVGGKIEDGIEVKNNQKIFANYKKVGDKYKLYRCRVGDKLIQPSKVLELLKSDKIFILKENEEEIEEVLKSYNLKFDYIELCPFCLLKNIYKRLTRNNRCRYGNLEICINCGINEIKEEVKISEEFIEKFLKRFKDVDKVLSLLRIRNPLDKPELTRYDIITGSEEDKIENYKIDELDIPEELKEIIKSRGIEELLPVQTLSVKAGLLNGDDLLIISATSSGKTLIGELAGIKNLIKTGKKFLFLVPLVALANQKYLEFKERYEKLGFKVSLRVGLGRIGKKVDVETSLDADIIVGTYEGIDYLIRTKRLKDIGTVVIDEIHSLNLEERGARLDGLIGRLRFLFKEAQKIYLSATIGNPKELAKQLNAKLVLYNGRPVPLERHIIFCKNDFAKLNIIKEIVKREWQNISKFGYRGQCLIFTYSRKRAEYLAKALKSKGIKAEFYHGGMEYIKRRKVEDDFANQKIQCVVTTAALSAGVDFPASTVILESLAMGADWLNPAEFQQMCGRAGRKGMHEIGKVYLLVEIGKKYHAKMENTEDEVAFKLLNAVPEDVKVEYNEDEEEEQILATISAGITNRYDIDRVPYIGRAFSLNKILSNLESYGMIKANNDVKLTNYGSAVAISFLYPKVAEKIKEGIIENKEIIKLITEIMPFENVYLSNNLKIKLSKILNINVPSRFFDALEVIREGMEKIKDKKLKEDLTLIIMEFEGVEVEEKILEMIINLRISGKTPGQISKTLYEEFKIQTYSGDIYYYLEQLLNLLDATERIARIFNKRYAEKVKELKEKIENPK", "sequence_length": 808, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b7a19e4715ffd9fd1ffe54a9bab46b8c7b919c7ea32d0510a8e6ba5f94ac87da", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58796.json", "taxon_id": "243232", "uniprot_accession": "Q58796", "uniprot_release": "2026_03" } ], "pfam_id": "PF19131", "short_name": "DUF5814", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19132", "short_name": "DUF5815", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19133", "short_name": "DUF5816", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19134", "short_name": "DUF5817", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19135", "short_name": "DUF5818", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { 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"example_count": 0, "examples": [], "pfam_id": "PF19141", "short_name": "DUF5824", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19142", "short_name": "DUF5825", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19144", "short_name": "DUF5826", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19145", "short_name": "DUF5827", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19146", "short_name": "DUF5828", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19147", "short_name": "DUF5829", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19148", "short_name": "DUF5830", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19149", "short_name": "DUF5831", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5832-pf19150.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5832-pf19150.yaml" } ], "pfam_ids": [ "PF19150" ], "protein_name": "Uncharacterized protein R435", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKSNNTSNRRAERLTTIGDDAPFGNINFFTISFLSPEKVEKTKYLDIRGFKIHNGYNTLEVANSDAKELRKKYIDHDVYVTQLGKVYSWDDPTKTDSIEYEDEKLNELEKTRKEHTDKVKLMQQQFKNEFEIIRPNINTDRLNNQKKRLRDKLYSKGLISKAEYEMAETLDKPTNEIKDIAVCQKQAEEEAVKMANEDYLDENPPVGIKFGCISIYSPKFIRGLKQFCFKLRGLFESQEELEDRVNKLHKIYPNDRIHTFEVGKWIPYSDTIDDNEVSLNYLNYSMKCYLDNVANEREEFEKRKDNLQKQNEEAAKITKRKNRQEKRREKRLALKEAKNTAKTSVSSIPDTSSTTTSTNSTPTNTKSNSVQNINHQGPVELPDNMDPAINESDKEAIQNILDYIEN", "sequence_length": 407, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95adf1eb46a765ccef64dcf588593add3a97d7d4876ea23f1e97115fe8e47b50", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQN1.json", "taxon_id": "212035", "uniprot_accession": "Q5UQN1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Frog virus 3 (isolate Goorha)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5832-pf19150.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5832-pf19150.yaml" } ], "pfam_ids": [ "PF19150" ], "protein_name": "Uncharacterized protein 012L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCAKLVEMAFGPVNADSPPLTAEEKESAVEKLVGSKPFPALKKKYHDKVPAQDPKYCLFSFVEVLPSCDIKAAGAEEMCSCCIKRRRGQVFGVACVRGTAHTLAKAKQKADKLVGDYDSVHVVQTCHVGRPFPLVSSGMAQETVAPSAMEAAEAAMDAKSAEKRKERMRQKLEMRKREQEIKARNRKLLEDPSCDPDAEEETDLERYATLRVKTTCLLENAKNASAQIKEYLASMRKSAEAVVAMEAADPTLVENYPGLIRDSRAKMGVSKQDTEAFLKMSSFDCLTAASELETMGF", "sequence_length": 297, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1903b3f8c4e7bba49061622479de3459e9f85732f23e77d6179102d54ed2f27f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6GZW3.json", "taxon_id": "654924", "uniprot_accession": "Q6GZW3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 6", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5832-pf19150.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19150", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5832-pf19150.yaml" } ], "pfam_ids": [ "PF19150" ], "protein_name": "Uncharacterized protein 287R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEHNIAEISVSSLTDPHFLRENKNLFIPDTDPPLSKIETINALSELSIGSSQEIQNPDHKTYSKLGFGKPLFTRADRHYVDPPLSNQDVGLISFVPCNDAKPNKYGVYGFAKIRGTFANVDESDQRASELIQKHDSVHKIYHVKVGTPFPIVHPKISSQYAASVKEIDVKADAKNEISRFVKTAGEEDKKVMEELKEREKQLREDVSKTPEQKLNELTPLDQYIYARKRLSDNLFVFEEHRKKLHDVKKVILQAELEADSLEKTNPEVINQYKEKYEKAAKEAGIDKSTDAMAVMIKENFYNKPNLQKIFSENLV", "sequence_length": 315, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bbe67876ec314d690034d9c49cddcba85833cb537a625c70030a7ce0370a5d40", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91FN7.json", "taxon_id": "176652", "uniprot_accession": "Q91FN7", "uniprot_release": "2026_03" } ], "pfam_id": "PF19150", "short_name": "DUF5832", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/sublancin-family-glycopeptide-tigr04196.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:TIGR04196", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/sublancin-family-glycopeptide-tigr04196.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/sublancin-pf19151.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19151", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/sublancin-pf19151.yaml" } ], "pfam_ids": [ "PF19151" ], "protein_name": "SPbeta prophage-derived bacteriocin sublancin-168", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKLFKEVKLEELENQKGSGLGKAQCAALWLQCASGGTIGCGGGAVACQNYRQFCR", "sequence_length": 56, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1dd2cfe5e7384efe614abe65e2aad1b60790750a151b7446cf14a4716559b17d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P68577.json", "taxon_id": "224308", "uniprot_accession": "P68577", "uniprot_release": "2026_03" } ], "pfam_id": "PF19151", "short_name": "Sublancin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19152", "short_name": "DUF5834", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19153", "short_name": "DUF5835", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19154", "short_name": "DUF5836", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19155", "short_name": "DUF5837", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Nostoc sp. UHCC-0398", "origins": [ { "cited_uniprot_accession": "A0A5Q0TWZ6", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/muscoride-a.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-3dbef7a0f0", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/muscoride-a.yaml" }, { "cited_uniprot_accession": "A0A5Q0TWZ6", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/unclassified/muscoride-b.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-f4bf230570", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/unclassified/muscoride-b.yaml" } ], "pfam_ids": [ "PF19156" ], "protein_name": "MusF1", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MVTYKPIQVDSEPYLEYIGKHKRAFDIYEDLYPVKLFEDFVQVEGRQGGMFRCGCNVTKDELSPARFALFFPTQDDLQLLHNPQQQLEAAFDFFRKVEGRAEVKVNYHLIEKFFGKNPDFRGIYFIAVGVDAQTEISESRLKLFIHLHDAPDKIESAIALCGDSPTLRAFLINNDLLVGFDFYLDGRSEIEVYPTIYQEELQRADIQSRILPLLPPRALPLLKQCEVLQIGFSPANKSNILYFDFVRDSNTFIDNLGNEMAKKVHAYYRHQPVKHVLVGVSEKDLYASSIEKVKLYYFKK", "sequence_length": 300, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cbef213da22f6c1d82d64831c3d03981f1401ae8eacba5986fce2fd70057b60d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A5Q0TWZ6.json", "taxon_id": "2665154", "uniprot_accession": "A0A5Q0TWZ6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Nostoc sp. UHCC-0398", "origins": [ { "cited_uniprot_accession": "A0A5Q0TX00", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/amino_acids_and_peptides/muscoride-a.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-3dbef7a0f0", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/amino_acids_and_peptides/muscoride-a.yaml" }, { "cited_uniprot_accession": "A0A5Q0TX00", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/unclassified/muscoride-b.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-f4bf230570", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/unclassified/muscoride-b.yaml" } ], "pfam_ids": [ "PF19156" ], "protein_name": "MusF2", "registry_status": "NOT_IN_REGISTRY", "reviewed": false, "sequence": "MVTSNPIQTNSEQYLEYIGKHKLAFDIYEDLYPLKLFEDFVEVEAKKRGLFYILSNVDKDEIYPARFCLRFPSLEEAQLLYNPQQQLQTALNFFRQVESRPEVKLNYHHIQQFFGTISDFQGIVLMAVAIDARTVITESRLKLYIWLKNAPEKVETAIALCGDSPTLRAFLVNDQLQVGFDLFFNGESEIEVYPIISQDELQQFHIRDRIIPLLPPRALPLLQQCAVFQVGFSEANESNILYFDYVHDPNSFVDNLGNEMTKKIHAYYRHQPIKSLTVGIPEHNFYGRAIEHVKLYYDMN", "sequence_length": 300, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95d8f20c33159469c0fa2faae78eeb2c9b808b4be47b07cbe731dba53a18b914", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A5Q0TX00.json", "taxon_id": "2665154", "uniprot_accession": "A0A5Q0TX00", "uniprot_release": "2026_03" } ], "pfam_id": "PF19156", "short_name": "DUF5838", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19157", "short_name": "DUF5839", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19158", "short_name": "DUF5840", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19159", "short_name": "DUF5841", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19161", "short_name": "DUF5843", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 6", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5844-pf19162.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19162", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5844-pf19162.yaml" } ], "pfam_ids": [ "PF19162" ], "protein_name": "Uncharacterized protein 115R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLEEKVKNDKKQQVHTILKLMSTTINYISHPSITKSLECNLNCKSLFQLFKNLNINSFLNIKFEQKNDILIFKDTEALKVLYVLIVIINESDHPLYPCYLEWIKENAWMEESMKLFTLIKY", "sequence_length": 122, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "80d619c4b6aa3f500207984f5485b2a9441fa3f40e77034447f485c5e699eca8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O55730.json", "taxon_id": "176652", "uniprot_accession": "O55730", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5844-pf19162.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19162", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5844-pf19162.yaml" } ], "pfam_ids": [ "PF19162" ], "protein_name": "Uncharacterized protein 031R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRTDATPTTTADWLGDLDLPTTTPTFKGRKTTQVRLEQRKKFVKILSSRIHYISHPRIGGLECSINLRDVCNVSPGYCALVVKHLMLLCACNPEQIFVNQWRWTVKLKNVAAMKFLSMVFADNANHPLYSLWTHWFNGTEWP", "sequence_length": 142, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7f6a3956d5ba61ff82254fdf52125aa85a02b1bad7b72396d0cb6127f654810c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q197C9.json", "taxon_id": "345201", "uniprot_accession": "Q197C9", "uniprot_release": "2026_03" } ], "pfam_id": "PF19162", "short_name": "DUF5844", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5845-pf19163.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19163", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5845-pf19163.yaml" } ], "pfam_ids": [ "PF19163" ], "protein_name": "Uncharacterized protein R849", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRALYLNKQYIPWGILNHKTLKNETVVLEKYNEINSSIGPVFHCKNLFVDSCDKDFVYFFVNKKFFPNVKKLYLASNPCSPEVLWRDFDTIYLTEIFSHYKNQWANNYKNVKIIPNNKFFYELQDYAPERIILEKEHDLY", "sequence_length": 141, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8d4c1cd745837a0d115ecab4cb2606573c17efe9176f2663550026cf4f795eaf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UP10.json", "taxon_id": "212035", "uniprot_accession": "Q5UP10", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5845-pf19163.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19163", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5845-pf19163.yaml" } ], "pfam_ids": [ "PF19163" ], "protein_name": "Uncharacterized protein L163", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRILKMNGRRQMWSQLQNEIILNDTVHINGFEGIGGMNRPVFMCRKLFVDNCDKNFIFYRLNKYSFPNVRELWLASHPTDPEVIHRPFDKIYLLDQYKYLQRYWAPRNTDIESVSYGRYLVELFAYYPENIKLHP", "sequence_length": 136, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "557d2f89b71bec758f6a41c4b6182d0601ef4a387272096d18f33583bede9ce8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UP37.json", "taxon_id": "212035", "uniprot_accession": "Q5UP37", "uniprot_release": "2026_03" } ], "pfam_id": "PF19163", "short_name": "DUF5845", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5846-pf19164.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19164", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5846-pf19164.yaml" } ], "pfam_ids": [ "PF19164" ], "protein_name": "Uncharacterized protein R11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKIFRKFAKTEFIFRFNIIDHNVILYSLYLDIIPMDSSNNYKKKYKKYKRKYIDLKKQLNYNQIHNFYFVHSTTNFSNLRDILKSGVIYPGKFLRPDQQKLSVNSEDVFANIYFEDINNLTHLQDFSILLHPKIIYDCGMFFNKGWQGGGKGDIIINATDSPVQIAHKLNEIREFLKNPILPEKIREFNPFLHHEAFFNHPISLNNGNLIGIICNHCDGSFNDYITGETHKESLKIINNIINDKLYNNVKIITRNYPIPKLNELLH", "sequence_length": 267, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d8be0460c5572a9525a4240e66ed7e5ee9559a13a9eba5b45f881b21e7338c50", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UP87.json", "taxon_id": "212035", "uniprot_accession": "Q5UP87", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5846-pf19164.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19164", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5846-pf19164.yaml" } ], "pfam_ids": [ "PF19164" ], "protein_name": "Uncharacterized protein L54", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKYYLIHGVVEDKPEKIVKILSDGYLFASSYSTQQGFSGIPLDYVYFSRLGDVNVFMGGFKFILSTKILYKRSFRYALNWVGSDINRTTKINYRYDNVDKVLDEINTHITNGTYSLSPSIDTLHEIILKKKVNLHRYLVAVSDGNYLTPEITDYLKTNYPNVKILTEIPSSADKLSEILEK", "sequence_length": 182, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b9b400ac51df504f20171d1cc42c7d92a54e88b4e007edfd4720420e34d214ab", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UPC8.json", "taxon_id": "212035", "uniprot_accession": "Q5UPC8", "uniprot_release": "2026_03" } ], "pfam_id": "PF19164", "short_name": "DUF5846", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5847-pf19165.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19165", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5847-pf19165.yaml" } ], "pfam_ids": [ "PF19165" ], "protein_name": "Uncharacterized protein R130", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRIRDVLSHENSNNTNYSDTNDTDYNDSHKLEKQYYEIDYEKFLLDSDIQEKYTKHIEYMLNKLLNKYKNKFVKKIIYDNLITNIINDFSDIIIDLSNQLDYVKQLTNKDFANKQIIDNMLIFLVKYEKILHSALARFVDIYFMRRLLDKKYVTNAVVYTGAYHSVTYIYLLSKIGFQMTHIVKSMVQSVAVANIVLNDIDDVSYRRNIYNLMYFFENNPFSQQCIDVSKFPKSFL", "sequence_length": 237, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "34f020ae2bb4dbb6813a5c148e1027401d1fa84e58e0bdf5f3ae633ee0d0ee26", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UPK5.json", "taxon_id": "212035", "uniprot_accession": "Q5UPK5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5847-pf19165.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19165", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5847-pf19165.yaml" } ], "pfam_ids": [ "PF19165" ], "protein_name": "Uncharacterized protein R160", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSISKTLDKNIKQVNGPINVVRLQGKIGSVNKVVYLFMDRHLAVEYQTECDNIFAKDVHMFFADSFKNIGSTGKTYDFFLEKDAEEITPKIPEELNTSKTKYISEVGKMFKKIFKYDPKANRALTSDIFQNTRFHYIDFRGYLYMDIFEPIDMANYVMENIWNKRDLKSEDLNRIAGQLNIVSQQCQLILQIMDSYSNNKNRDKNNSERQYGVRKITPLKYTTVSESYQKTYKQQKQIQIDYIRYFINKIYTKYNDNTIKSKLINRLEYFKNGIRNLNTEVNNIIVDINNIMTEMTSSSGKLVQYNEKWYYGMPYEKEIMYIADLYNKLRNLNGDSVSYIARLIDIYFLRRFLDKDYITNAILYSGANHSLTDIDILVKDFDFKITHVAYSKYPINQITNSVKKAEFGMVNIQPLFDNNEQCSDVTYFPDNFL", "sequence_length": 433, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "866c1b2e040b5c30bd5bd48b3c237e0a7200c7fd0c1f7c359365c3cd40ac5805", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UPM2.json", "taxon_id": "212035", "uniprot_accession": "Q5UPM2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5847-pf19165.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19165", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5847-pf19165.yaml" } ], "pfam_ids": [ "PF19165" ], "protein_name": "Uncharacterized protein R161", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTTLDKNIVQINGPVNIARLEGQINGFNKVVYLFMDHHIPVQFQTECDNIFARDVQTFLAESFRNIGETGLMYDFFIEERPESIINEDSKTTNSRKEGYIWEVVKMFNKVFKFDPKENKVMSSNVFENVRFHYADIREYIYLDTLNLYNDIRNLLQEMQENNFMDPYILEHIVNILSNIFEKNKSVIDIMNSFEKNSEANSVNKITPLKYPKVYEDTNIPLTNKEPNKDASTLEKQKNLRTDYLKYFLNKLYNSYKDKNIKSKLLLELRQLKNNITNLQNKITKTMDNVKKIIEEIEQSKNKVTLTDYSFFMGISPLETRIYIANLINQISILATANIIENIGFMDIFFLRRFLDKDYITNAIIYSGSLHSANYMKILVKEFDFKVTHISKSQYPIDKLNDSIKERNNLAEIVYLAGSYTQCSDITNFPKNFQ", "sequence_length": 433, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4f736dcb99507a143b45d41480bf1de578b9e0ef76fff33a457ff560eb226d5c", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q7T6X0.json", "taxon_id": "212035", "uniprot_accession": "Q7T6X0", "uniprot_release": "2026_03" } ], "pfam_id": "PF19165", "short_name": "DUF5847", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19166", "short_name": "DUF5848", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19167", "short_name": "DUF5849", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 6", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5850-pf19168.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5850-pf19168.yaml" } ], "pfam_ids": [ "PF19168" ], "protein_name": "Uncharacterized protein 117L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNQNKVLSLGLLLLAAVAAWYLWNKKNKKSGSQYVPASSIVEPFMPSLTYKVDKVYDASAPFGGQGNGDFMSVPGTFQSMVPPRFGMLDGAVVSVPTKNGSINPGIAPLYNNLDQDAMAFNPSSPLQQGIMDDNGEMIQPVVYDRIMYANRRSRLLEGSDFIRGDLPIFPQNLGWFSPSVQPHIDLRKGIVDNYDKDTADQLKLLQMKSEGRFDRAFEGEMVPPNTLIPSYGTFINPSVGDVEIVNFE", "sequence_length": 249, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7d08141de67b2564f7a3c94e363bbf4b80b7eb16b380051f6991f96ccfccc0b2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O55732.json", "taxon_id": "176652", "uniprot_accession": "O55732", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5850-pf19168.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5850-pf19168.yaml" } ], "pfam_ids": [ "PF19168" ], "protein_name": "Uncharacterized protein 107R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMNNSITLLLALLVGLVGFAFTNKKRALVREDFLPPMSFKVDRVAAPNQKFADCNMFWSVPKSPLLAATTSAATPTAQQQQQDGGVSALDPLLTADGDASQPIVYDRFIYANKKSRLRQHGDPIRGDLPIIPHNSDWFRPSVTPHLDLKEGALQAIGGFDNGTNNQLSALMNASAGNALQTFGGAAFSGPGGLASNLGLAGPQQPLVSQPPMTGSLPARYMSALPYGSNLMTGQTATGMIPQYTAQKLVHVDRAGDVQVLRS", "sequence_length": 262, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0c18dbd85ff37a9710b3dbce6cdf853c5d17a30f52081ec839e03606203f1fd0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q196V3.json", "taxon_id": "345201", "uniprot_accession": "Q196V3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Frog virus 3 (isolate Goorha)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5850-pf19168.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5850-pf19168.yaml" } ], "pfam_ids": [ "PF19168" ], "protein_name": "Uncharacterized protein 020R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLQNYAIVLGMAVAVAIWYFFKIEEEAPPGPNPPKPDPPKPDPPKMHMPKKKPHWMDPHLTGSQTVQYSRNRSMGDPIRGDLPIIPRDDGWFSTAANPAHTLHAGALSMIAPASTGGGLTVNKLISAYADKGNAMSGRHNSPSYYGSS", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "73d6bead04f60f1066e3016a942ff9bdff61ec6e628ce712b8150a2d47f4e699", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6GZV5.json", "taxon_id": "654924", "uniprot_accession": "Q6GZV5", "uniprot_release": "2026_03" } ], "pfam_id": "PF19168", "short_name": "DUF5850", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5851-pf19169.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19169", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5851-pf19169.yaml" } ], "pfam_ids": [ "PF19169" ], "protein_name": "Uncharacterized protein L516", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIRLQTPIIKETIHPKKTPTALNWLYPEKIIHNISSKALIDNIYSENYQHILVGLISLIEPWVYLHTNLKLIDNGHLPLIDDETIILISSGEYMIDYYYRIEVNKYGKQTDLFDKLLQSVNNSNKDFFDKYKNYFKISGIDFDLNINTSNTNRFEIIEKYVIESLVEILDKITDGLDAIYNYDNQRDVLLPIFNNNYNNDNVESIDIDYDLDLLKKVKTIMANPTFKFDKDLMFHPTKSLIMEARETNYRVFNDLGNQIDAIMKNSNNIMIFPYAYFLIKNVHGKNDYPNSSYKKFDNIIINQLNQYFIELSNGEIYSNYHKNAFFVDSINGFRSINHDLYLKRFNDFVPEENNNNAFYDTIKFPNITQVNNMEIIPSDSFYIYNQGKEVIDSIVEKKHNIVVNQSKAKATRSNTYIIDKDTIELNLSVVFKGLLFNNKPVVYPISSNIVTFEIERINSTNYVDNVNVPYQVLQIKNPKVTIKTYDRKTLINKLMKKLFDEDHFLPWYIPNYNQNIVKLLFLINLDKHEYIDFLKKLLQTQNKKELVDYSLYYCFDYQSYSFYNLIWIDPMTVDRYYEIQYLIKFIIIMDNILLLPDVSLRKILIDFNSSYGWYDPNVDLSSVKVSYQNFKNNLLNTLNELDDIYHNKSK", "sequence_length": 650, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a5d0e70e121cbae57490d45e2e04dda259bcae075c97dc9637cd046ae2483941", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQ79.json", "taxon_id": "212035", "uniprot_accession": "Q5UQ79", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5851-pf19169.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19169", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5851-pf19169.yaml" } ], "pfam_ids": [ "PF19169" ], "protein_name": "Uncharacterized protein L515", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNPTNLNFGKILKQVEMVDVNEDSLDLKFPKRTIVDISTDTFIKIIFEKDDNYYLFLNYVNALDLYLNYYTNINLVSSNKQLLNQDEHIDVYFKGGNVMNYHFRTMVSDPRLKELFSAYFKKSDFDFSVSIHTDTDNRFNQLKTYVYPKIIDYLITTSNLFNEYLQEIINGDINKSTIKIDPKFLHNFKQDNADLKYYTIRDTIKDIIGLPRFNFVKEIIDNTRNTNTKNFMHIRQIDNIGRYIRVKFHDNSIIQFIPSDKSFYELKYTPYIINNFNQVIDYYNEYVLNGLIPVYHNFYENSKYHACLLYPYYKYLVEPIGQHEMEYSDLIDKIIKYNFSLLEKSEFYTKEKINSMLQQISTSLNELKDTYYEKNSDNPPDKTEVTNSNAFIRYTVNKNRSDNPHIELAPTNNFLVYNDFEKSDPLSIINFDDNQTIKTTNNVHYVSGNMLIKNILGNRQILDFDLFRIKFNLVAVNYIFENEKLLREFKIPSEFIDVSVTIIDSNVYNEDHQTFIMPIKLDNTIIPDIPVKSHSYTYFIGDLIRILFTDFNFFPWMKGKYEKRIKRLLLLLYLYDQQHQTNYLDTLYNMATNIKYNLTNPNKTQKNMDKYALSKVHLNSYKDYSNLFDLVYIDNKYGPIKEPMKMLLIVSEILDKNNALDIINHFRKYLKLAPLTNISNLKTEFGKFLDEIISTYNDINPQNIQAKSSINTLVSRNNYSMIKNNRRNY", "sequence_length": 729, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dea271c46c5ecc80bbdfc6f3c5bf6e04778e5ecc2e933aa6f876d1e814d342dc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQ80.json", "taxon_id": "212035", "uniprot_accession": "Q5UQ80", "uniprot_release": "2026_03" } ], "pfam_id": "PF19169", "short_name": "DUF5851", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Frog virus 3 (isolate Goorha)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5852-pf19170.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19170", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5852-pf19170.yaml" } ], "pfam_ids": [ "PF19170" ], "protein_name": "Uncharacterized protein 040R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIRALCTIVLIAAGVAVALYLSLVYGYYMSVGVQDASWLTALTGNRPDAKVPFFDKAVGEAPEDKVAYTERPYPVSSTQSPTTTQSPTTTTLKPTTMAVLASIGATPTPVVCHNVRGDMQGIACNVVMKKTVAAALKVQPEAKKDNVNAQYRYGMWTPLRRSRSPFGVWNIPKKLAIAAPDV", "sequence_length": 182, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "775a51cac95b403a01791c309a4b4724458d4f1ba8af0fbde4655a7c7af86d71", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6GZT6.json", "taxon_id": "654924", "uniprot_accession": "Q6GZT6", "uniprot_release": "2026_03" } ], "pfam_id": "PF19170", "short_name": "DUF5852", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19171", "short_name": "DUF5853", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5854-pf19172.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5854-pf19172.yaml" } ], "pfam_ids": [ "PF19172" ], "protein_name": "Uncharacterized protein L421", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MENLPKINHFRDLIKTLNIQIKNKQHGLISIEKQLSVAIDNVENLCLIRNKLKTDIENLLENKIDVENKLLVLRNQTEYIVSSTVKTVVKKFGVVPDINRLDQCIRYLIMTFHPILNPRKPTTDELIKLGPEKIILKAHEFYNNILVMNSGPHVFFHTHDNYQLCEWDGKSTKCKCGSTCVFWCIEECNLLTDISLSCKNPIGYAKCGF", "sequence_length": 209, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8fc8f28d243cc36f45d5d3b244c3bf6b1f94770a66fd746226b552f0dbf47004", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQM1.json", "taxon_id": "212035", "uniprot_accession": "Q5UQM1", "uniprot_release": "2026_03" } ], "pfam_id": "PF19172", "short_name": "DUF5854", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19173", "short_name": "DUF5855", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5856-pf19174.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19174", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5856-pf19174.yaml" } ], "pfam_ids": [ "PF19174" ], "protein_name": "Uncharacterized 14.6 kDa protein in mobD-ri intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKFSDFSQSGKPSKADEYLGLLMAAQAYFHSAHFETKSYARHKAYDFIFSELPDLIDKFGEQYLGYSGRKYTPSIPDASKLPTDTIKMIDRILDQSNSIYKEMPPAIQSTIDDITGMFYQSKYLLSLE", "sequence_length": 128, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0062cbcd5853c152ec7c2f00d1d33096416f48e1363ca1acfc6bc1304a792df7", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P13303.json", "taxon_id": "10665", "uniprot_accession": "P13303", "uniprot_release": "2026_03" } ], "pfam_id": "PF19174", "short_name": "DUF5856", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19175", "short_name": "DUF5857", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19176", "short_name": "DUF5858", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5859-pf19177.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19177", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5859-pf19177.yaml" } ], "pfam_ids": [ "PF19177" ], "protein_name": "Uncharacterized protein L274", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNLTIGAIFLIFFAVSAFASAPCPKKLADTTCPREPYSFEGMKRQEPIKGRNVGWFQCQATMTVHDPVTTAVLVTQPTFTFNLSTLYHNSCGCWKTVTTIPGDAVKMEYGNGLPGQAMYGSCFYATWADLAGNPVETVGFARNVVGVHRDLIYVSRATNELVVHQSIYPLGRDQVGDEYVLVRHFDPVTKGIDWVQAVYCTKIQDQLEPLP", "sequence_length": 212, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "926125cb32c29ce3dc05230e9ff76cdcef6570d6c5af968a9d4c3cc66ef03994", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UPU8.json", "taxon_id": "212035", "uniprot_accession": "Q5UPU8", "uniprot_release": "2026_03" } ], "pfam_id": "PF19177", "short_name": "DUF5859", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19178", "short_name": "DUF5860", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ttc3-dzip3-dom-pf19179.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19179", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ttc3-dzip3-dom-pf19179.yaml" } ], "pfam_ids": [ "PF13639", "PF19179", "PF24525", "PF24812", "PF24905" ], "protein_name": "E3 ubiquitin-protein ligase TTC3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDDFAEGGLSLADDILLEDYPYEDDCICTPDFTTDDYVRVTQLYYEGVGMQYKDYAQSEKNLEYDICNIWCSKPLSILQDYCDAIKLYIFWPLLFQHQHSSIISRLHPCVEAIRSRAAEISLKKLQHLELMEDIVDLAKKVANDSFLIEGLLKIGYKIENKILAMEDALNWIKYTGDVTILPKLGSVDNCWPMLSIFFTEYKYHITRVVTENCNLLEEFRRHSCMQCVKQGELMKMRGNEEFSKEKFEIAVIYYTRAIEYRPENHLLYGNRALCFLRMGQFRNALSDGKRAIVLKNTWPKGHYRYCDALCMLGEYDWALQANIKAQKLCKNDPEGIKDLIQQHVKLQKQIEDLQGRTSNKNPIKAFYESRAYIPRNSSAPAFRTSLNFVETERGFRKTKYKMANGGDQNQKVADEALKGDDCDCHPEFLPPPSQPPRHKGKQKSRNNESEKPSFNSEVSLQVDLKSILEKQFSKSSRAAHQDFANIMKMLRSLIQDGYTALLEQRCRSAAQAFTELLNGLDPQKIKQLNLAMINYVLVVYGLAVSLLGIGRPEELSEAENQFKRIIEHYPNEGLDCLAYCGIGKVYLKKNRFLEALNHFEKAKTLISRLPGILTWPTSNVIIEESKPEKVKVMLEKFVEECKFPPVPDAVCCYQKCRGYSKIQIYLTDPDFKGFIRISCCQYCKVEFHMNCWKKLKTTTFNDKIDKDFLQGICLTPDCEGIISKIIIYSSGGQVKCEFEHKVIKEKVPSRPVLKQKCSSLEKLRLKEDKKLKRKIQKQEAKKLAQERMEEDLRESNPPKNEEPEETSDSAQRCQFLDDRILQCIKQNADKIKSVVLNTSTLLKELLSWKVLSTEDYTTCFSSKNFVHEAVDYVIGHLIQEKNRVKTRIFLHVLSELKELDPKLAPWIQRLNSFGLDAIGPFFTRYGASLKELDFHVVTVLWDEKYGHKLGSIEGKQLDYFFEPASAMEARCLIWLLEEHRDKFPALHSALDEFFDIMDSRCTVLRKQDSDEMPFGCIKVKNKGKKKKPKDSKPMLVGSGAASVAPSSEAVTPEDHSRRNSDSAGPFAVPDHLRQDVEEFEALYDQHSSEYVVRNKKLWDINPKQKCSTLYDYFSQLLEEHGPLDMSDRMFSEEYEFFPEETRQILEKAGGLKSFLLGCPRFVVIDNCIALKKVASRLKKKRKKKNMKAKVEDISKTGEYLRVKLPLNPTAREFQPDVKSEALSEDVKSIPGPADSSTLAAEDLKAQLDSDSSSGSASEDSRLEVASPDSPTPLCEDASPSPTPAPEEAKPTYWAQSHLVTGFCTYLPFQGFGITQRPAYINMVPSLSQFTSIYTPLANISSEYPMQRSMPVVPSFVASNRADENAAAYFESPNLNTEHDSGDHMASETQILEDTLGVCVRSQGSAADADPALSEPEGNSEHSGSSDSLWEASLENVSGTTDAPAAPSVAIQVSRSMVHQEVNTEPYEPFETQQGDLSQKEKECHLLREQLKVACENCEQIELRSSQEIKDLEEKLQRHTEENKISKTELDWFLQDLDREIKKWQQEKKEIQERLKALKKKIKKVINTSEMSAQKNDGFDKECEPHPDQSLGFSSALTDEKTKAEESVRKGKELYEESHQRAVAAEVSVLENWKEREVCKLQGVASQSEAYLKSLKLMSSDSATYPDVEYDILSWESFLSTVREEIESKKSQFEEHIKAIKNGSRLSDLSSVQLSEVSFPGCSTIHPQFLSESSGHEDPGLVACVDSMTGAVLNDPYMDSASGCPEEVPELSLGSPTHQPEVTQQLELKGASQVSPSEQSPEADEKLSGQATRSSQSPKKPSNSIIEHLSVIFPCYTSTELAGFIKKVRNKTKNSFSGLTIEEIVEKVTEHIVDEQKKKKPNPGKDKKTSEAHSAASVAKSSQSPPLAAAGPSARTKGQKKDDVPAPDGNSCEICHEIFKSKNMRVLKCGHKFHKGCFKQWLKGQSTCPTCGSSDLLSEE", "sequence_length": 1979, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8a15b7086baa31c6db9dec511705e6a51dd1f878db0e09ad71800d03c8564fb3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O88196.json", "taxon_id": "10090", "uniprot_accession": "O88196", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ttc3-dzip3-dom-pf19179.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19179", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ttc3-dzip3-dom-pf19179.yaml" } ], "pfam_ids": [ "PF13639", "PF19179", "PF24525", "PF24812", "PF24905" ], "protein_name": "E3 ubiquitin-protein ligase TTC3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDNFAEGDFTVADYALLEDCPHVDDCVFAAEFMSNDYVRVTQLYCDGVGVQYKDYIQSERNLEFDICSIWCSKPISVLQDYCDAIKINIFWPLLFQHQNSSVISRLHPCVDANNSRASEINLKKLQHLELMEDIVDLAKKVANDSFLIGGLLRIGCKIENKILAMEEALNWIKYAGDVTILTKLGSIDNCWPMLSIFFTEYKYHITKIVMEDCNLLEELKTQSCMDCIEEGELMKMKGNEEFSKERFDIAIIYYTRAIEYRPENYLLYGNRALCFLRTGQFRNALGDGKRATILKNTWPKGHYRYCDALSMLGEYDWALQANIKAQKLCKNDPEGIKDLIQQHVKLQKQIEDLQGRTANKDPIKAFYENRAYTPRSLSAPIFTTSLNFVEKERDFRKINHEMANGGNQNLKVADEALKVDDCDCHPEFSPPSSQPPKHKGKQKSRNNESEKFSSSSPLTLPADLKNILEKQFSKSSRAAHQDFANIMKMLRSLIQDGYMALLEQRCRSAAQAFTELLNGLDPQKIKQLNLAMINYVLVVYGLAISLLGIGQPEELSEAENQFKRIIEHYPSEGLDCLAYCGIGKVYLKKNRFLEALNHFEKARTLIYRLPGVLTWPTSNVIIEESQPQKIKMLLEKFVEECKFPPVPDAICCYQKCHGYSKIQIYITDPDFKGFIRISCCQYCKIEFHMNCWKKLKTTTFNDKIDKDFLQGICLTPDCEGVISKIIIFSSGGEVKCEFEHKVIKEKVPPRPILKQKCSSLEKLRLKEDKKLKRKIQKKEAKKLAQERMEEDLRESNPPKNEEQKETVDNVQRCQFLDDRILQCIKQYADKIKSGIQNTAMLLKELLSWKVLSTEDYTTCFSSRNFLNEAVDYVIRHLIQENNRVKTRIFLHVLSELKEVEPKLAAWIQKLNSFGLDATGTFFSRYGASLKLLDFSIMTFLWNEKYGHKLDSIEGKQLDYFSEPASLKEARCLIWLLEEHRDKFPALHSALDEFFDIMDSRCTVLRKQDSGEAPFSSTKVKNKSKKKKPKDSKPMLVGSGTTSVTSNNEIITSSEDHSNRNSDSAGPFAVPDHLRQDVEEFEALYDQHSNEYVVRNKKLWDMNPKQKCSTLYDYFSQFLEEHGPLDMSNKMFSAEYEFFPEETRQILEKAGGLKPFLLGCPRFVVIDNCIALKKVASRLKKKRKKKNIKTKVEEISKAGEYVRVKLQLNPAAREFKPDVKSKPVSDSSSAPAFENVKPKPVSANSPKPACEDVKAKPVSDNSSRQVSEDGQPKGVSSNSPKPGSEDANYKRVSCNSPKPVLEDVKPTYWAQSHLVTGYCTYLPFQRFDITQTPPAYINVLPGLPQYTSIYTPLASLSPEYQLPRSVPVVPSFVANDRADKNAAAYFEGHHLNAENVAGHQIASETQILEGSLGISVKSHCSTGDAHTVLSESNRNDEHCGNSNNKCEVIPESTSAVTNIPHVQMVAIQVSWNIIHQEVNTEPYNPFEERQGEISRIEKEHQVLQDQLQEVYENYEQIKLKGLEETRDLEEKLKRHLEENKISKTELDWFLQDLEREIKKWQQEKKEIQERLKSLKKKIKKVSNASEMYTQKNDGKEKEHELHLDQSLEISNTLTNEKMKIEEYIKKGKEDYEESHQRAVAAEVSVLENWKESEVYKLQIMESQAEAFLKKLGLISRDPAAYPDMESDIRSWELFLSNVTKEIEKAKSQFEEQIKAIKNGSRLSELSKVQISELSFPACNTVHPELLPESSGDDGQGLVTSASDVTGNHAALHRDPSVFSAGDSPGEAPSALLPGPPPGQPEATQLTGPKRAGQAALSERSPVADRKQPVPPGRAARSSQSPKKPFNSIIEHLSVVFPCYNSTELAGFIKKVRSKNKNSLSGLSIDEIVQRVTEHILDEQKKKKPNPGKDKRTYEPSSATPVTRSSQGSPSVVVAPSPKTKGQKAEDVPVRIALGASSCEICHEVFKSKNVRVLKCGHKYHKGCFKQWLKGQSACPACQGRDLLTEESPSGRGWPSQNQELPSCSSR", "sequence_length": 2025, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a52812d0d9d3314386c771ab9eb1134c4455b722e7a0847d68b47adabb6f3706", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P53804.json", "taxon_id": "9606", "uniprot_accession": "P53804", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hepn-dzip3-pf18738.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hepn-dzip3-pf18738.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ttc3-dzip3-dom-pf19179.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19179", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ttc3-dzip3-dom-pf19179.yaml" } ], "pfam_ids": [ "PF13639", "PF18738", "PF19179", "PF24525", "PF24905", "PF30182" ], "protein_name": "E3 ubiquitin-protein ligase DZIP3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSLAEEFFVSGNPDVEEQTKEETEIIAEKPVTQLDKQKMDISADPEPVNALLEIKKVLNPISALPKGVFPNIEKFIQEDFSFQTMQREVTTHSQTGEEIVPALTLHFLITQLEMALRNIQASNYTAQQINVGYYLTLLFLYGVALTERAKKEDCIEAENKFLVMKMVIQESEICENFMCLVYFGRGLLRCAQKRYNGALLEFYKSLQEIGDTDDNWFEVDPTDDEDLPTTFKDSLNNFIKTTESNIMKETICSYLDCERSCEADILKNTNYKGFFQLMCSKSCCIYFHKICWKKFKNLKYPGESDQSFSGQKCLKEGCPGDMVRMLQCDVPGIVKILFEVVRKDEYITIENLGASYKNLMSLELTDTDIRPKFNLKPNTKDEVPIFKLDYNYFYHLLHIIIISGTDMVRQIFDEAMPPTLLKKELLIHKNVLEPYYNHLWTNHPLGGSWHLLYPPNKELPQSKQFDLCLLLALIKHLNVFPAPRKGWDMEPPSSDLSKSADILRLCKYRDILLSEILMNGLTELQFNSIWKKVSDILLRLGMKQDDLDKVKENPIENISLDYHQLSIYLGIPVPEIIQRMLSCYQQGITLQSITGSQRLDVEEFQNDEEDLSPPVMEYNIDVKSNTEIQLAEINKDVASIPSESSTESVKDLQEVKSKTKKKKRTKSNKKDKDSEDEQVSYMVEKDDQLETEQVDVNTLSTYMKTDTSDAQEDSAAEDKFCSLDELHILDMVEQGSSGKESTDFKETEKERLAHQHQLYKLQYECEDYKRQLKTVTFRWQENQMLIKKKEKIIVSLNQQVAFGINKMSKLQRQIHAKDDEIKNLKDQLSLKRSQWEMEKHNLESTVKTYLNKLNAETSRALTAEVYFLQCRRDFGLLHLEQTEKECLNQLARVTHMAASNLESLQLKAAVDSWNAIVADVRNKIAFLRTQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPAVCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKTAFPQQTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHTASQPNAPQDPKSAQGSATWEGDKDMDNEEEEEEPCVICHENLSPENLSVLPCAHKFHSQCIRPWLMQQGTCPTCRLHVLQPEEFPGHPNGQLPKI", "sequence_length": 1204, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "407313552914dc4b2bc1355c02259c62d6b5b32b12cc152d3cf30d314d065514", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q7TPV2.json", "taxon_id": "10090", "uniprot_accession": "Q7TPV2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hepn-dzip3-pf18738.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hepn-dzip3-pf18738.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ttc3-dzip3-dom-pf19179.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19179", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ttc3-dzip3-dom-pf19179.yaml" } ], "pfam_ids": [ "PF13639", "PF18738", "PF19179", "PF24525", "PF24905", "PF30182" ], "protein_name": "E3 ubiquitin-protein ligase DZIP3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSLPDEFFVRHPAVEDQRKEETENKLEKSSGQLNKQENDIPTDLVPVNLLLEVKKLLNAINTLPKGVVPHIKKFLQEDFSFQTMQREVAANSQNGEEIVPALTLRFLITQLEAALRNIQAGNYTAHQINIGYYLTLLFLYGVALTERGKKEDYTEAENKFLVMKMMIQENEICENFMSLVYFGRGLLRCAQKRYNGGLLEFHKSLQEIGDKNDHWFDIDPTEDEDLPTTFKDLLNNFIKTTESNIMKQTICSYLDCERSCEADILKNTSYKGFFQLMCSKSCCVYFHKICWKKFKNLKYPGENDQSFSGKKCLKEGCTGDMVRMLQCDVPGIVKILFEVVRKDEYITIENLGASYRKLISLKITDTDIRPKISLKFNTKDEMPIFKLDYNYFYHLLHIIIISGTDIVRQIFDEAMPPPLLKKELLIHKNVLESYYNHLWTNHPLGGSWHLLYPPNKELPQSKQFDLCLLLALIKHLNVFPAPKKGWNMEPPSSDISKSADILRLCKYRDILLSEILMNGLTESQFNSIWKKVSDILLRLGMMQEDIDKVKENPIENISLDYHQLSVYLGIPVPEIIQRMLSCYQQGIALQSITGSQRIEIEELQNEEEELSPPLMEYNINVKSHPEIQFAEINKDGTSIPSESSTESLKDLQEVKSKQRKKKKTKNKKNKDSKEDQVPYVVEKEEQLRKEQANPHSVSRLIKDDASDVQEDSAMEDKFYSLDELHILDMIEQGSAGKVTTDYGETEKERLARQRQLYKLHYQCEDFKRQLRTVTFRWQENQMQIKKKDKIIASLNQQVAFGINKVSKLQRQIHAKDNEIKNLKEQLSMKRSQWEMEKHNLESTMKTYVSKLNAETSRALTAEVYFLQCRRDFGLLHLEQTEKECLNQLARVTHMAASNLESLQLKAAVDSWNAIVADVRNKIAFLRTQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILMQQFLGRPLVKESFFRPILTVPQMPAVCPGVVSATGQPRAPLMTGIAWALPAPVGDAVPPSAGLRSDPSIMNWERITDRLKTAFPQQTRKELTDFLRKLKDAYGKSLSELTFDEIVCKISQFIDPKKSQSQGKSVSNVNCVSPSHSPSQPDAAQPPKPAWRPLTSQGPATWEGASNPDEEEEEEEPCVICHENLSPENLSVLPCAHKFHAQCIRPWLMQQGTCPTCRLHVLLPEEFPGHPSRQLPKI", "sequence_length": 1208, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3d6df33ad3f68ac0a6a0ff97e34214adbe39078e5a2ca1dc0c90a675bbb42fd5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q86Y13.json", "taxon_id": "9606", "uniprot_accession": "Q86Y13", "uniprot_release": "2026_03" } ], "pfam_id": "PF19179", "short_name": "TTC3_DZIP3_dom", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19180", "short_name": "DUF5862", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 6", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5863-pf19181.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19181", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5863-pf19181.yaml" } ], "pfam_ids": [ "PF19181" ], "protein_name": "Uncharacterized protein 422L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSAIFKIIHETSSKFMDSILREGKLLTSNNLNKKFLTDSPKGQGSKDRKLCDSEESIKNKEHFWKHCDEADGVYFRILEMDTPLKTYAGDIILVFSKDMLYKYSWILNTTENFGFYISSPGFEGESQFSGEIGTTYTLDTLKDMDVSSFDPYSSELCVFNNVSLKFLKEIYVREPAFEDLQLSVRALNKYSNAPVIIF", "sequence_length": 198, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8f9494820afc196899418f73e8ee2eeac613fcf9e121b717a52a429d769162be", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91FA3.json", "taxon_id": "176652", "uniprot_accession": "Q91FA3", "uniprot_release": "2026_03" } ], "pfam_id": "PF19181", "short_name": "DUF5863", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5864-pf19182.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19182", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5864-pf19182.yaml" } ], "pfam_ids": [ "PF19182" ], "protein_name": "Uncharacterized protein L334", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGVGFGYTEYTDTFNRKYVNNVINFKKTQIKDSVKTKLSDIISKGYSYNKYIKICKYSVEALEIVKKCLFCKNFLCKIKVFKRIKKHIHVKFFHNDYVDKIKEKFNKLVNKSLKKQINHVCLNSEISLKKKLKVLCLTHNYNIIFEDYGYNFKCKVYGWHVYKKRLDFGNEENVKNGKYCIFTMLEY", "sequence_length": 187, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "392653029a2c443565bf4016afa1b6d26c4437a6c2b0c9a83993496b524d5de9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQR9.json", "taxon_id": "212035", "uniprot_accession": "Q5UQR9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5864-pf19182.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19182", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5864-pf19182.yaml" } ], "pfam_ids": [ "PF19182" ], "protein_name": "Uncharacterized protein L333", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKQSHYSIKSNFLSKSEKKISIDHYDEADGPSLSSSSSVISKNDLSREKIINRIKNLIDNKFSYNKNIKICTIIKNKCMIIQTIKDMLFSTNLYFIIKIKKSFGLFNSVYVKFFDKDIFENSALNLYNNAYELAKKNSTDIVLEKNILLKNELIAECKTRNYNMALDMYSHKFVYDTYCRKVFVVDDNVVLKKYKIYAHIVD", "sequence_length": 203, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6c5b78636cb70dbb0bb00b616fb1bac3cf292d7c32406d16b247a9dfd366cc39", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQS0.json", "taxon_id": "212035", "uniprot_accession": "Q5UQS0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5864-pf19182.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19182", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5864-pf19182.yaml" } ], "pfam_ids": [ "PF19182" ], "protein_name": "Uncharacterized protein L332", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSMHNDLLFTIKVGFNIISSKYIYIKFSNPNKFPNKFSNKFDKLLKKSINKNISTIILCDNIDCYNQIYAKTKTNLYNLILIGTGFNVETEKYYTWDSYYEIYMVKYRVIVKLQSK", "sequence_length": 116, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "16e5dbd85cd693610b96e5c7461d3400ea9b4511ece976cf426fe4e77171eedf", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQS1.json", "taxon_id": "212035", "uniprot_accession": "Q5UQS1", "uniprot_release": "2026_03" } ], "pfam_id": "PF19182", "short_name": "DUF5864", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19183", "short_name": "DUF5865", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19184", "short_name": "DUF5866", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19185", "short_name": "DUF5867", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5868-pf19186.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19186", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5868-pf19186.yaml" } ], "pfam_ids": [ "PF19186" ], "protein_name": "Uncharacterized protein L31", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKYIVGDYLYLGSKENEINNNFTWLMRYLYREFVLDYDKMKKIYGHIESDNNYDDIYNDNNFRDILYFEPNLMDDDKYIYKYENNINLDNDIDDIVFYEEIKNLILELQVYLSEKTTKRLRVMGITKLKLVNDFGINKYVGGIRDLDWKLHFWPEYTIVNDNYITLHELIIACFKIKSHKFETYHEYFMKFDEFHVFSCVKKKDGLNTMCKEIIAFVNFNHYSSL", "sequence_length": 225, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d2fe1dd02a6e20d8542349cf8e8298a4b2b5feeb45e28a3c9a2bc6a21bf4790c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UPA6.json", "taxon_id": "212035", "uniprot_accession": "Q5UPA6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5868-pf19186.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19186", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5868-pf19186.yaml" } ], "pfam_ids": [ "PF19186" ], "protein_name": "Uncharacterized protein R44", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKYIKNNVLDLGSKDSYIKFNLSTVIDYIYNQIPLDYAEMNKIYKNICTELDDSPEFQSNLTEDDEYVYKFNEILKKCYDEQEMTKRKIFDPDFLNYKLINELHIYLTKKSPKKLVIKSINSIKLVNNEGVNTDINGTTNVDWKLHFWPEFTIQNSECLTLHDIIIACYKIKSHKFENWYELYCNMFTEFYVFQNSNDKNIWKEIFAVIKFDHGC", "sequence_length": 215, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "00bb320d95ff1237e3413f4eb801e18a5a853920d3b62346c8a2c03e66d30e7d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UPB7.json", "taxon_id": "212035", "uniprot_accession": "Q5UPB7", "uniprot_release": "2026_03" } ], "pfam_id": "PF19186", "short_name": "DUF5868", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19194", "short_name": "DUF5869", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19195", "short_name": "DUF5870", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19196", "short_name": "DUF5871", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19197", "short_name": "DUF5872", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19200", "short_name": "MupG_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19201", "short_name": "DUF5873", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Paramecium bursaria Chlorella virus 1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5874-pf19202.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19202", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5874-pf19202.yaml" } ], "pfam_ids": [ "PF19202", "PF21294" ], "protein_name": "Exolysin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MADVEVPINVITEINNLNELNNVNTGNEASGGISRWLIYTIIVLVVAAVVGLVIFIVKKVNNKKRESGQIIQEVSQVLTENVDKKVANDLLDVALRARTEQAQLEANSATSVQLAAVGKISQSDADMAIKSAADAKIKAEQANIEAAKAIENIRKQELDNANKAVAMATTAAAAISATYQDKSKDIIDNKLREAEETYKQVVQQRQLAEKEYNASLATRRQAERNVYNKKVTEANETIKSVKKTEDVLKVLDDKIKQAKKATDDFKKKKQADKNKPPASKPSPGPKPAPKPSPGPKPAPKPSPGPKPSPGPSACPQFQTRDSKGQCVCDPRQGVTWDGKSCVCDMKNGWNWDGKKCVKGACPQFQTRDSKGQCVCDPKQGVTWDGKGCVCDMKNGWNWDGKKCVKSGGGGGGGNVSGTITLMSNEETAVLNKGTYPGQGGKRYNRQWNVPGNMSDSCLLEFDIFFPSNFWFGCQGKIGGFFLSRPGQRGVASGCAKPGKRTGASYRVMWGGTTYKNGKRVGRDGSGVYPYLYFDDSTNSKQIPKLKQVEDCGHSIMVEEFSRSIKRNAWNNIKIGLKLNTIGQRNGLIYFEVNGQKQTQDQVMWTSSSDFNIKYVIFGTFYGGCTGQNINQIPNTFVKYKNVKISKWSP", "sequence_length": 649, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c6a6942ebd9b6aae5e341860039895446ab52dc96677019a2ef1c1a3cae353eb", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O41043.json", "taxon_id": "10506", "uniprot_accession": "O41043", "uniprot_release": "2026_03" } ], "pfam_id": "PF19202", "short_name": "DUF5874", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Frog virus 3 (isolate Goorha)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5875-pf19203.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19203", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5875-pf19203.yaml" } ], "pfam_ids": [ "PF19203" ], "protein_name": "Uncharacterized protein 096R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWSQFIAILSQSMPIGVCRKYPVCQTHLKKLKVADLSQESKDSEMAAMTEYISSNRPWGQGSYPSNGYVSPVSGCTLHFGNVSTLHPDSAALDGRLREMAEVLGVQDYASAPVRVSSTGYIDKVKAMVYEIDGVESMSMADLMGCTQLHQLAGKVASDIQSGAINHREFAGEILSNMVGPLRELLPKEDCDSIVSILEKVRDGEAVSADEVFPIITKFQEAGF", "sequence_length": 223, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cd769859f1df7e3ae018d349894bc3aa9ac5e9db303eca3ec67b4bba07b8f26b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6GZM9.json", "taxon_id": "654924", "uniprot_accession": "Q6GZM9", "uniprot_release": "2026_03" } ], "pfam_id": "PF19203", "short_name": "DUF5875", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Frog virus 3 (isolate Goorha)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5876-pf19204.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19204", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5876-pf19204.yaml" } ], "pfam_ids": [ "PF19204" ], "protein_name": "Uncharacterized protein 051R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTVRITTTTGYPHGLLNPTVPLPMSRYTLVQETAQDILYTPMGKELALMGTCTKTECKYVRMQEDAHLLAEASKKALTMRLEQNPELKDLLASSGSQPIVYGDTRLVAHLTLLRGVSVLSPEGMVFSEDAMRKLYKGTIDMFVSDPSSLLNVDRATLTLESLRAMVKASGNWPSTSATAAVAIPEAPVTGVSVSDKVVMEHSASVYATQKMDFERSLLIRHLLAMDPAAEADVSHLVSRMDARTRAASSRLAAMYHDGLLDSAVTDGLVPPDQRLLEPMSTPSTPEVHAPQDGMSFEVPHVLTFAGGPVKVDDHVYDTPLHYAYNLAIRRMFADFGEGDLDDVHVSQVSVIYSDMLDKWIDAMYPQTLWRLMTEKFSGNQSCLAVLLSTDGADVKWTGRTEEESFLISDMMGQIKTGWIRSGPPSSSPLSSADIAGTDFFYGWLSYMSRTYATALNVISEMTLARLLDLPDIPEEVRQPTDREQAALGSDYVRSAWRVCYSEFVHKFEGKNLFASVDYCVKTHLKALKVSRDSVTGTAKTLSAKGYGTLIALPVIRLAMKS", "sequence_length": 561, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b9d337af0bb67ec40d33601c20c673c8c69101877219de32db40a5ac4dc0c1e6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6GZS5.json", "taxon_id": "654924", "uniprot_accession": "Q6GZS5", "uniprot_release": "2026_03" } ], "pfam_id": "PF19204", "short_name": "DUF5876", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Frog virus 3 (isolate Goorha)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5877-pf19205.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19205", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5877-pf19205.yaml" } ], "pfam_ids": [ "PF19205" ], "protein_name": "Uncharacterized protein 087L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYLNALAKVRRGGGGGRPAAGGRPAAGGRPAAGGRPAAGSRAAAGAAGPPKPAKTVRGTVRPRGFGGGRFPPRRFPPAPVDEATREAEKILKSIHAHKVVKLPAQRKKHRGLYKTVRHTMPPDYIPVLGAEVLAGISSPDVMQAVLRIAPTRDNTQAADAMLCATILRAMPYKMVHPFLDMAAEGKDRHANVVLRDTFFPQNARTMDEFKAFMRRRAPDCPSPRTPMVKPPFRIPDAKPGLTPSVRNPRLNIPETAMVSIMTSAPWVAGHSIKGTVLPEGSTGALRGGLASRRWYVDNWVSVRMMGNPPVEYLTFSGKRIPETREMYDAYVRHLQSFGATAVSSSPSPPPNGDAATALANMYVDTGPEYLAALVRALPSGSGAEYEAALAYTVARAVPVFSNGETLHQIRLREGRYRPDGVHGLSDDIAFAEVYSDPDMVAEWKPRLDRIIKARVSEVIAAYRRLATGDLTAKRTPELALSSRIPAPAGLLFPKAFGESAVIRTSRGRRLVIARARRDAPAVLTDLLSVLITPMYPATAEPQRVASDDPTVLGDEPVAAAVEEPRGQAFRRKWGRGVGGKLLDALENYMDAIQQGRLPPYDNDME", "sequence_length": 605, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bfb21411da75f04f1f86f9419058cc476d796f5d752fa6625387245274a96840", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6GZN8.json", "taxon_id": "654924", "uniprot_accession": "Q6GZN8", "uniprot_release": "2026_03" } ], "pfam_id": "PF19205", "short_name": "DUF5877", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19206", "short_name": "DUF5878", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19207", "short_name": "DUF5879", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19208", "short_name": "DUF5880", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 22, "discovery_scanned": true, "example_count": 22, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp2-c-pf19212.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19212", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp2-c-pf19212.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF13087", "PF13604", "PF16251", "PF16348", "PF19211", "PF19212", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVKAMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIACENPFMVNQLAYSSSANGSLVGTTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSCPEWMDDFEADPKGKYAQNLLKKLIGGDVTPVDQYMCGVDGKPISAYAFLMAKDGITKLADVEADVAARADDEGFITLKNNLYRLVWHVERKDVPYPKQSIFTINSVVQKDGVENTPPHYFTLGCKILTLTPRNKWSGVSDLSLKQKLLYTFYGKESLENPTYIYHSAFIECGSCGNDSWLTGNAIQGFACGCGASYTANDVEVQSSGMIKPNALLCATCPFAKGDSCSSNCKHSVAQLVSYLSERCNVIADSKSFTLIFGGVAYAYFGCEEGTMYFVPRAKSVVSRIGDSIFTGCTGSWNKVTQIANMFLEQTQHSLNFVGEFVVNDVVLAILSGTTTNVDKIRQLLKGVTLDKLRDYLADYDVAVTAGPFMDNAINVGGTGLQYAAITAPYVVLTGLGESFKKVATIPYKVCNSVKDTLTYYAHSVLYRVFPYDMDSGVSSFSELLFDCVDLSVASTYFLVRLLQDKTGDFMSTIITSCQTAVSKLLDTCFEATEATFNFLLDLAGLFRIFLRNAYVYTSQGFVVVNGKVSTLVKQVLDLLNKGMQLLHTKVSWAGSNISAVIYSGRESLIFPSGTYYCVTTKAKSVQQDLDVILPGEFSKKQLGLLQPTDNSTTVSVTVSSNMVETVVGQLEQTNMHSPDVIVGDYVIISEKLFVRSKEEDGFAFYPACTNGHAVPTLFRLKGGAPVKKVAFGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVKEQVSDLLVKLLRGMPIPDFDLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVECDEECSEVEASDLEEGESECISETSTEQVDVSHEISDDEWAAAVDEAFPLDEAEDVTESVQEEAQPVEVPVEDIAQVVIADTLQETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYEADTEQTQSVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTIVDIPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVDGVQYYCYTSKDTLDDILQQANKSVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLANKEQEAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLVEGELLVQDLRLNKLLHWSDQTICYKDSVFYVVKNSTAFPFETLSACRAYLDSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPTFLHRFYSLKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDSTDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGLKACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVTTSTAPDFVAFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYSSDCNVVRYSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLVSSDGQPGGDAISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAMYKGKPILWVNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVESTPVEPPTVDVVALQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLHTLYVDPKYQVIVLKDNVLSSMLRLHTVESGDINVVAASGSLTRKVKLLFRASFYFKEFATRTFTATTAVGSCIKSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSALKTAGVVTGNVVKQCCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSVYHLYVFNQVLSSDVMFEDAQGLKKFYKEVRAYLGISSACDGLASAYRANSFDVPTFCANRSAMCNWCLISQDSITHYPALKMVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLHYFFAQTSIFVDWRSYNYAVSSAFWLFTHIPMAGLVRMYNLLACLWLLRKFYQHVINGCKDTACLLCYKRNRLTRVEASTVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNTFICEEVANDLTTALRRPINATDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTNLDKLKFKEVCKTTTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTSVGDSSEIATKMFDSFVNSFVSLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARGPAGVESDVETNEIVDSVQYAHKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAASVNQIVLRNSNGACIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVRFTANKIVGGAPTWFNALRDFTLKGYVLATIIVFLCAVLMYLCLPTFSMVPVEFYEDRILDFKVLDNGIIRDVNPDDKCFANKHRSFTQWYHEHVGGVYDNSITCPLTVAVIAGVAGARIPDVPTTLAWVNNQIIFFVSRVFANTGSVCYTPIDEIPYKSFSDSGCILPSECTMFRDAEGRMTPYCHDPTVLPGAFAYSQMRPHVRYDLYDGNMFIKFPEVVFESTLRITRTLSTQYCRFGSCEYAQEGVCITTNGSWAIFNDHHLNRPGVYCGSDFIDIVRRLAVSLFQPITYFQLTTSLVLGIGLCAFLTLLFYYINKVKRAFADYTQCAVIAVVAAVLNSLCICFVASIPLCIVPYTALYYYATFYFTNEPAFIMHVSWYIMFGPIVPIWMTCVYTVAMCFRHFFWVLAYFSKKHVEVFTDGKLNCSFQDAASNIFVINKDTYAALRNSLTNDAYSRFLGLFNKYKYFSGAMETAAYREAAACHLAKALQTYSETGSDLLYQPPNCSITSGVLQSGLVKMSHPSGDVEACMVQVTCGSMTLNGLWLDNTVWCPRHVMCPADQLSDPNYDALLISMTNHSFSVQKHIGAPANLRVVGHAMQGTLLKLTVDVANPSTPAYTFTTVKPGAAFSVLACYNGRPTGTFTVVMRPNYTIKGSFLCGSCGSVGYTKEGSVINFCYMHQMELANGTHTGSAFDGTMYGAFMDKQVHQVQLTDKYCSVNVVAWLYAAILNGCAWFVKPNRTSVVSFNEWALANQFTEFVGTQSVDMLAVKTGVAIEQLLYAIQQLYTGFQGKQILGSTMLEDEFTPEDVNMQIMGVVMQSGVRKVTYGTAHWLFATLVSTYVIILQATKFTLWNYLFETIPTQLFPLLFVTMAFVMLLVKHKHTFLTLFLLPVAICLTYANIVYEPTTPISSALIAVANWLAPTNAYMRTTHTDIGVYISMSLVLVIVVKRLYNPSLSNFALALCSGVMWLYTYSIGEASSPIAYLVFVTTLTSDYTITVFVTVNLAKVCTYAIFAYSPQLTLVFPEVKMILLLYTCLGFMCTCYFGVFSLLNLKLRAPMGVYDFKVSTQEFRFMTANNLTAPRNSWEAMALNFKLIGIGGTPCIKVAAMQSKLTDLKCTSVVLLSVLQQLHLEANSRAWAFCVKCHNDILAATDPSEAFEKFVSLFATLMTFSGNVDLDALASDIFDTPSVLQATLSEFSHLATFAELEAAQKAYQEAMDSGDTSPQVLKALQKAVNIAKNAYEKDKAVARKLERMADQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDNDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVKLQNNEIKPSGLKTMVVSAGQEQTNCNTSSLAYYEPVQGRKMLMALLSDNAYLKWARVEGKDGFVSVELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQVLGHIAATVRLQAGSNTEFASNSSVLSLVNFTVDPQKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAISVKPESTADQETYGGASVCLYCRAHIEHPDVSGVCKYKGKFVQIPAQCVRDPVGFCLSNTPCNVCQYWIGYGCNCDSLRQAALPQSKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVELDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQRLTEYTMMDLVYALRHFDQNSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKLGERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYYSYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANCVNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMDVSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQDFYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNKYFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPTMTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDKEVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGHMLDSYSVMLCGDNSAKFWEEAFYRDLYSSPTTLQAVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCGVSDVTKLYLGGMSYFCVDHRPVCSFPLCANGLVFGLYKNMCTGSPSIVEFNRLATCDWTESGDYTLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERQLLLVWEAGKSKPPLNRNYVFTGYHITKNSKVQLGEYIFERIDYSDAVSYKSSTTYKLTVGDIFVLTSHSVATLTAPTIVNQERYVKITGLYPTITVPEEFASHVANFQKSGYSKYVTVQGPPGTGKSHFAIGLAIYYPTARVVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDRFKVNETNSQYLFSTINALPETSADILVVDEVSMCTNYDLSIINARIKAKHIVYVGDPAQLPAPRTLLTRGTLEPENFNSVTRLMCNLGPDIFLSMCYRCPKEIVSTVSALVYNNKLLAKKELSGQCFKILYKGNVTHDASSAINRPQLTFVKNFITANPAWSKAVFISPYNSQNAVARSMLGLTTQTVDSSQGSEYQYVIFCQTADTAHANNINRFNVAITRAQKGILCVMTSQALFESLEFTELSFTNYKLQSQIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANVPYSRVISRMGFKLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGVNFVVQPVGVVDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKVQQLFYTEDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKHAFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAVCRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQGLENIAFNFVKQGHFIGVEGELPVAVVNDKIFTKSGVNDICMFENKTTLPTNIAFELYAKRAVRSHPDFKLLHNLQADICYKFVLWDYERSNIYGTATIGVCKYTDIDVNSALNICFDIRDNGSLEKFMSTPNAIFISDRKIKKYPCMVGPDYAYFNGAIIRDSDVVKQPVKFYLYKKVNNEFIDPTECIYTQSRSCSDFLPLSDMEKDFLSFDSDVFIKKYGLENYAFEHVVYGDFSHTTLGGLHLLIGLYKKQQEGHIIMEEMLKGSSTIHNYFITETNTAAFKAVCSVIDLKLDDFVMILKSQDLGVVSKVVKVPIDLTMIEFMLWCKDGQVQTFYPRLQASADWKPGHAMPSLFKVQNVNLERCELANYKQSIPMPRGVHMNIAKYMQLCQYLNTCTLAVPANMRVIHFGAGSDKGIAPGTSVLRQWLPTDAIIIDNDLNEFVSDADITLFGDCVTVRVGQQVDLVISDMYDPTTKNVTGSNESKALFFTYLCNLINNNLALGGSVAIKITEHSWSVELYELMGKFAWWTVFCTNANASSSEGFLLGINYLGTIKENIDGGAMHANYIFWRNSTPMNLSTYSLFDLSKFQLKLKGTPVLQLKESQINELVISLLSQGKLLIRDNDTLSVSTDVLVNTYRKLR", "sequence_length": 7078, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "37034eceadf17b5a65e3a6d258049b1b65c77419835a1a8eceb0e808a2aa2be4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/K9N7C7.json", "taxon_id": "1263720", "uniprot_accession": "K9N7C7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus 279/2005", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-nab-pf16251.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-nab-pf16251.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-sud-c-pf12124.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12124", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-sud-c-pf12124.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-sud-m-pf11633.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11633", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-sud-m-pf11633.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp1-pf11501.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11501", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp1-pf11501.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp2-n-pf19211.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19211", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp2-n-pf19211.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF16251", "PF16348", "PF19211", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLALGVSEKTHVQLSLPVLQVRDVLVRGFGDSVEEALAEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDAQGTNHGYKVVELVAELDGIQYGRSGTTLGVLVPHVGETPVAYRNVLLRKNGNKGAGGHSYGIDLKSYDLGVELGTDPIEDYEQNWNTKHGGGVLRELIRELNGGAFTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVWFTERSEKSYERQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYLPANAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFAYVGCYNKRAYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASFSASTCAFVDTVKGLDYKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSILTPLYGFPSQAAGVIRSIFTRALDTANHSIPDLQRAAITILDGISEQSLRLIDAMVYTSDLLTNSVIVMAYVTGGLVQQITQWLSNMLGTTVDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLVTGVFDIVKGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGAKLRTLNLGEVFIAQSKGLYRQCIRGKEQLQLLMPLRAPKEVTFFEGDSHDTVFTSEEVVLKNGELEALETPVDSFTNGAVIGTPVCVNGLMLLELKDKEQYCALSPGLLATNNVFSLKGGAPVKGVTFGEDTVLEVQGYKNVKITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYEDEEEIPEETCEHEYGTEDDYKGLPLEFGASTEIQQVDEEEEEDWLEEAIAAKPEPEPLPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKATNGAMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYANFNSQDVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYFAVNDQDLYDHVVLGYLDSLKPKVETPTQENLELKEQPAVETLTQENLELEELPVIEKPVDVKFKARIEEVNTSLEETKFLTSRLLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVGDVISSGDITCVIIPAKKAGGTTEMLAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRKCKSVFYVLPSKTPNDKEEILGTVSWNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFLKRGDKVVYHTVGSPIQFHLDGEVLLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPHAKHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRETMTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICGRDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRIDGAYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEVEDTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQAAVTTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAAFGVLLSNLGIPSYCDGVRESYVNSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNAITTKISLKGGKIVSTWFKLMLKATLLCVLAALFCYIIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIMATDDCFANKHAGFDSWFSQRGGSYRNDKSCPVVAAIITREIGFIVPGLPGTVLRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEAGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFSTFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLVLMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSQNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVCTVCGTWKGYGCSCDQLREPMMQSADASTFLNGFAV", "sequence_length": 4388, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "543bb4029c40f29d491ea1214c9b83bc69194870a2ded28883fc31669216a216", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6F5.json", "taxon_id": "389167", "uniprot_accession": "P0C6F5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus 512/2005", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp4-c-pf16348.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16348", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp4-c-pf16348.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp7-pf08716.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08716", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp7-pf08716.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp8-pf08717.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp8-pf08717.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp9-pf08710.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp9-pf08710.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp10-pf09401.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp10-pf09401.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp3-c-pf19218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp3-c-pf19218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp4-n-pf19217.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp4-n-pf19217.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp6-pf19213.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp6-pf19213.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-peptidase-pf08715.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-peptidase-pf08715.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF16348", "PF19211", "PF19212", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASNHISLAFANDEEISAIGFGSVEEAVSYYSDAAVNGFDQCRFVSLGLQDAVVGVEDDDVVMLITGVTQLRAYLGTFGDRPLNLRGWLLFSNCNYFLEELDLVFGRCGGTTIPVDQFMCGADGAPVIQEGDWTFMDYFQDSNQFTLNGITYVKAWDVDRKPNDYAKQNVTCIRRITYITDHRHVLADGTTMKTARHPKVNKSVVLDSPFDQIYKEVGSPFMGNGSTFVEMLKDPAFFHALITCECGRSEWTVGDWKGYNSLCCNIKCKPITIVTPKAVPGAVVITKAGIGAGLKCYNNVFLKHIIDLVVPGTNLGWGVWRIAKVQSKDDVATSGNVLVDDPEDRLDPCYFGNDGPFATKFKFQLLANSFDDEVKGAIVQGVVHVNTAICDVVKDILGLPWFVKKLGSLVTVMWDQFVAGVQSMKICTLKVVQLAKALSCATMSVVKGVITLVAEVPEIFKRLFYTLTSALKSLCTSSCDALVVAGKSFAKIGDYVLLPSALVRLVSSKVKGKAQSGIKQLQFATVVLGDTHKVESDRVEFSSVNLKMVDEEFPLNPVGHTVAVGNQAFFCSDGLYRFMADRDLVITSPIFKPELELEPIFECDAIPGFPKVAASNVAELCVKVDTLLFNYDKIYKKYSTIIKGDRCYIQCTHTFKAPSYYFDDDEFVELCTKYYKLPDFDAFYNAVHAATDMDQFCALCTSGFEVFIPRVPDCPPILNDIDGGSIWTSFILSVRSATDFIKTLKIDLGLNGVVVFVTKKFRKAGALLQKLYNAFLDTVTSFIKVAGVAFKYCATCVPKIVINGCYHTVTRLFAKDLQIPTEDGVADFNTFNHCVFPVNPTRIETDSLELEEVDFVEPGVDGKLVILDDYSFYSDGTNYYPSDGKGVVASCFKKKGGGVVTISDEVQVRTIDPVYKVRLEYEFEDETLVKVCEKAIGTKLKVTGDWSNLLETLEKAMDVVRQHLDVPDYFVYDEEGGTDLNLTIMVSQWPLSSDSEDDFKAVDDEPNANTDETVDTFAEDVAETQNVQQDVTQDEVEAVCDLVVKATEEGPIEHEELSEDQKEVQQALAFIEDKPVVVKPDVFAFSYASYGGLKVLNQSSNNCWVSSALVQLQLTGLLDSDEMQLFNAGRVSPMVKRCYESQRAIFGSLGDVSACLESLLKDRDGMSITCTIDCGCGPGVRVYENAIFRFTPLKTAFPMGRCLICSKTLMHTITQMKGTGIFCRDATALDVDTLVVKPLCAAVYVGAQDGGHYLTNMYDANMAVDGHGRHPIKFNTINTLCYKDVDWEVSNGSCDVKPFLTYKNIEFYQGELSALLSVNHDFVVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIKCKEHSILNVVGPRKGKHAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAFLACVGDRVCKCFCYTDKERLAIQNFVTSFQTEQPVEPLPVIQEVKGVQLEKPVPDVKVENPCEPFRIEGDAKFYDLTPSMVQSLQVTRLVSFTNSDLCLGSFVRDCDGYVQGSLGGAIANYKKSNPVLPAGNCVTLKCDGFISFTFVILPKEGDTNYEKNFNRAIAKFLKLKGSLLVVVEDSSVFNKISHASVAGYVAKPALVDTLFEAKPVQVVVTQDQRSFHTVELSTSQTYGQQLGDCVVEDKKVTNLKPVSKDKVVSVVPNVDWDKHYGFVDAGIFHTLDHTMFVFDNNVVNGKRVLRTSDNNCWINAVCLQLQFANAKFKPKGLQQLWESYCTGDVAMFVHWLYWITGVEKGEPSDAENTLNIISRFLKPQGSVEMLRATSTTCDGTCSTKRVVSTPVVNASVLKVGLDDGNCVHGLPLVDRVVSVNGTVIITNVGDTPGKPVVATENLLLDGVSYTVFQDSTTGVGHYTVFDKEAKLMFDGDVLKPCDLNVSPVTSVVVCNNKKIVVQDPVKRVELDASKFLDTMNVASEKFFTFGDFVSRNIIVLIVYLFSLLAICFRALKKRDMKVMAGVPERTGIILKRSVKYNYKALKFFFRLKFQYIKVFLKFSLVLYTLYALMFMFIRFTPVGTPICKRYTDGYANSTFDKNDYCGNVLCKICLYGYEELSDFTHTRVIWQHLKDPLIGNILPLFYLVFLIIFGGFFVRIGITYFIMQYINAAGVALGYQDNVWLLHLLPFNSMGNIIVVAFIVTRILLFLKHVLFGCDKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDSYGYGCTFINDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLYSGSTFWKYNFDITEAKYACKDVLKNCNILTDFVVFNNSGSNVTQVKNACVYFSQLLCKPIKLVDSALLASLNVDFSANLHKAFVEVLSNSFGKDLSNCSNMNECRESLGLSDVPEEEFSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEKLAVHDIANCMRVGAKVVNHNVLTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRMHLTIPTISVANKKGAGLPSLFTRLYSFFWHLCVLIVVLFVATSLLDFSAQVTSDTQYDFKYIENGVLKVFEKPLDCVHNAFVNFNEWHNAKFGSIPTNSRRCPIVVGTSDEVRYIPGVPAGVFLYGKSLIFAMSTIFGTSGLCFDDRGLTDPDSCIFNSACTTLSGIGGRNVYCYREGVVDNAKLYSSLLPHSYYRLMDGNHIVLPEIITRGFGIRTIKTQAMTYCRTGECIDSQAGVCVGLDRFFVYSKTPGSDYVCGTGFFSLLFNVIGMFSNSIPVTVMSGQILLNCVVAFTAVMACFAFTKFKRLFGDMSFGVLSVGLCTVVNNLSYVVTQNSIGMLAYATLYFLCTKGVRYSWVWHVGFAISYCFLAPWWVVLAYLICALLEFLPNLFKLKVSTQLFEGDKFVGSFESAASGTFVLDMHSYQKLANSISTEKLKQYCASYNRYKYYSGSASEADYRLACFAHLAKAMSDFANDHMDKLYTPPTVSYNSTLQAGLRKMAQPSGIVEGCIVRVSYGNLTLNGLWLGDTVICPRHVIASNTTNVIDYDHAMSLVRLHNFSISSGNMFLGVISASMRGTLLHIKVNQSNVNTPNYTYKVLKPGDSFNILACYDGSAAGVYGVNMRTNYTIRGSFISGACGSPGYNINNGVVEFCYMHHLELGSGCHVGSDMDGTMYGKYEDQPTLQIEGASNLVTENVCSWLYGALINGDRWWLSSVSVGVDTYNEWALRNGMTALKNVDCFSLLVAKTGVDVGRLLASIQKLHGNFGGKSILGCTSLCDEFTLSEVVKQMYGVTLQSGKVSRAFRNASIVCCLLFLFLSEMLNHSKLFWINPGYITPVFLAIIVASSALMLLVKHKLLFLQLYLLPSLCIVSGYNIFKDYHFYTYMLEEFDYKVPFGGFNVTGVLNISLCCFVMGLHTFRFLQTPNKIFSYVVAVLTVLYTYYYSTDVLGLILTSMSGFTNYWFIGTATYKLATYVLPHTSLLDSFDAIKAVVFLYLLLGYCNCVYYGSLYWINRFCKLTLGCYEFKVSAAEFKYMVANGLRAPTGVFDALILSLKLIGVGGRKTIKISSVQSKLTDLKCTNVVLLGCLSNMNIAANSREWAYCVDLHNKINLCNDAEAAQEMLLALLAFFLSKNSAFGVDELLDSYFNDSSVLQSVAATYVNLPSYLAYETARQSYEDALANGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAASQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILSLAKDGVVPLSIIPAVSATKLNIVVSDIESYSKIQREGCVHYAGVIWSVVDIKDNDGKPVHAKEVVTSNVESLAWPLFLNCERIIKLQNNEIIPSKIKQRPIKAEGEGVVADGNALYSNEGGRTFMYAFISDKPDLKVVKWEFDGGSNAIELEPPCKFLVEAPSGPVVKYLYFVRNLNNLRRGAVLGFIGATVRLQAGKQTEQATNSSLLTLCAFAVDPPKTYLDAVKSGHRPVGNCVKMLANGSGNGQAITNGVEASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVPLGTLDPIRFVLENTVCKVCGCWQANGCTCDRAVIQSVDSGYLNECGALVQLD", "sequence_length": 4128, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cd75dbf7b9bc8f21f68d8a7f592ecc91c58f18f499fbd4f1dd07ac68c5f6b5e1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6F6.json", "taxon_id": "693999", "uniprot_accession": "P0C6F6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus 133/2005", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp2-c-pf19212.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19212", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp2-c-pf19212.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF16251", "PF16348", "PF19211", "PF19212", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSKAGVTTQGARGKYRAELYNEKRSDHVACTVPLCDTEDMASKLTPWFEDGETAFNQVSSILKEKGKILFVPMHMQRAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLNVKPLGMFFPYDSSLETGEHTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKYSQNLLKKLIGGDCIPVDQYMCGKNGKPIADYAKIVAKEGLTTLADIEVDVKSRMDSDRFIVLNKKLYRVVWNVTRRNVPYSKQTAFTVVSVIQCDDKESVPEHTFTIGSQILMVSPLKATNNKNFNLKQRLLHTFYGKEAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGANYSANDVDLQSSGLVPKNALFLANCPCANNGACSHNAAQVYSILDGKACVEVGGKSFTLTFGGVVYAYMGCCDGTMYFVPRAKSCVSRIGDAIFTGCTGTWDKVVETANLFLEKAQHSLNFCQQFALTEVVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDYIRDAINIGANGVCNATINAPFIAFTGLGESFKKVAAIPWKICSNLKSALDYYCSNIMFRVFPYDIPCDVNDFVELLLDCGKLTVATSYFVLRYLDEKFDTVLGTVSNACQTALSSFLNACVAASRATAGFISDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIMSKAMKLLHTNVSWAGTKLSAIIYEGREALLFNSGTYFCLSTKAKTLQDQMNLVLPGDYNKKTLGILDPVPNADTIDVTANSTVVDVVHGQLEPTNEHGPSMIVGNYVLVSDKLFVRTDDEEFYPLCINGKVVSTLFRLKGGMPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKDEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEFIEDDYLSDELPIADDEEAWTRAVEEVMPLDDILVAEIELEEDLPLETALESVEAEVGESISDELCVVETAKAQEPSVESTDSTPSTSTVVSENDLSVKPMSRVAETGDVLEVETAVVGGPVSDVTASVVTNDIVSVEQAQQCGVSSLPIQDEASENQVHQVPDLQCTSETKVEIVQPRQDLRPRRLRKSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISNSGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTIVVTPLISSGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATPSKPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVDGVSYYLYSARDALTDVIAAANGCPGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDVAIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDATTFRKQLGATFYKGVDISDALPTVKMGGESLFVADNLSESEEVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSTPWLLVSGLNEVKVSTSTDPVYRAFNVFQGVETSVGHYVHVRVKDGLFYKYDSGSLTKTSDMKCKMTSVWYPKVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFNNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQLIEPNVPVVEDVSITTRKLIEVKCKGLNKPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIVANGGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGRSFCKFVVNYGVLQNMFLFLKMLFFLPFNYLWPKKQPTVDVGVSGLRTAGVVTTNIVKQCGTAAYYMLLGKFKRVDWKATLRLFLLLCTTILLLSSIYHLVIFNQVLSSDVMLEDATGILAMYKEVRSYLGIRTLCDGLAVEYRNTSFDVVDFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQTVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAADNILSVKFSATKIVGGAPSWLLRVRDLTVKGYCILTLFVFTVAVLSWFCLPSYSIATVNFNDDRILTYKVIENGIVRDIAPNDACFANKYGHFSKWFNENHGGVYRNSVDCPITIAVIAGVAGARVANVPATLAWVGRQIVLFVSRVFANTNVCFTPTNEIPYDTFSDSGCVLSSECTLFRDAEGNLNPFCYDPTVLPGASSYADMKPHVRYDMYDSDMYIKFPEVIFESTLRITKTLATQYCRFGSCEESAAGVCISTNGSWALYNQNYSTRPGIYCGDDYFDIVRRLAVSLFQPVTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADYTQCAVVAVVAALLNSLCLCFIVANPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGTVVPIWMLASYTVGVMLRHLFWVLAYFSKKHVDVFTDGKLNCSFQDAASNIFVIGKDTYVALRNAITQDSFVRYLSLFNKYKYYSGAMDTASYREACAAHLCKALQTYSETGSDILYQPPNCSVTSSVLQSGLVKMSAPSGAVENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQLTDPNYDALLISKTNHSFIVQKHIGAQANLRVVAHSMVGVLLKLTVDVANPSTPAYTFSTVKPGASFSVLACYNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVLNFVYMHQMELSNGTHTGSSFDGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNGCKWFVKPTRVGIVTYNEWALSNQFTEFVGTQSIDMLAHRTGVSVEQMLAAIQSLHAGFQGKTILGQSTLEDEFTPDDVNMQVMGVVMQSGVKRISYGFMHWLMSTLVLAYVSVMQLTKFTMWTYLFETIPTQMTPLLFGFMACVMFTVKHKHTFLSLFLLPVALCLTYANIVYEPQTLVSSTLIAVANWLTPTSVYMRTTHLDFGLYISLSFVLAIIVRRLYRPSMSNLALALCSGVMWFYTYVIGDHSSPITYLMFITTLTSDYTITVFATVNLAKFISGLVFLYAPHLGFILPEVKLVLLIYLCLGYMCTMYFGVFSLLNLKLRVPLGVYDYSVSTQEFRFLTGNGLHAPRNSWEALILNFKLLGIGGTPCIKVATVQSKLTDLKCTSVVLLTVLQQLHLESNSKAWSYCVKLHNEILAAVDPTEAFERFVCLFATLMSFSANVDLDALANDLFENSSVLQATLTEFSHLATYAELETAQSSYQKALNSGDASPQVLKALQKAVNVAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDNDVLNGVIANARNGCVPLSIVPLCASNKLRVVIPDISVWNKVVNWPSVSYAGSLWDVTVINNVDNEVVKPTDVVETNESLTWPLVIECSRASSSAVKLQNNEIHPKGLKTMVVTAGIDQVNCSSSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKDGFINIELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQAGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPEATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAHVRDPVGFLLKNVPCNVCQYWVGYGCNCDALRNNTVPQSKDTNFLNESGVLV", "sequence_length": 4441, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "33869f4280c186c9d575440c541df338e056a86f17221ef5a3b6026b14a35c40", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6F7.json", "taxon_id": "389230", "uniprot_accession": "P0C6F7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus HKU3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-sud-c-pf12124.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12124", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-sud-c-pf12124.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp4-c-pf16348.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16348", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp4-c-pf16348.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp7-pf08716.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08716", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp7-pf08716.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp8-pf08717.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp8-pf08717.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp9-pf08710.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp9-pf08710.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12379", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp10-pf09401.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp10-pf09401.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp3-c-pf19218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp3-c-pf19218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp4-n-pf19217.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp4-n-pf19217.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp6-pf19213.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp6-pf19213.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-peptidase-pf08715.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-peptidase-pf08715.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF16251", "PF16348", "PF19211", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRNVLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGGVVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVWFTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYLPTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKRAYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASFSASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQAAGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAYVTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIKGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQCIRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVGTPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGSYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLNGFAV", "sequence_length": 4376, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e245bec24665357a98a81fcc72dd64fd1371d28a010baa58cfb6afb6d2c1797b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6F8.json", "taxon_id": "442736", "uniprot_accession": "P0C6F8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bovine coronavirus (strain 98TXSF-110-ENT)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-nab-pf16251.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-nab-pf16251.yaml" } ], "pfam_ids": [ "PF01661", "PF01831", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11963", "PF16251", "PF16348", "PF19213", "PF19217", "PF19218", "PF22104" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMVDCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRGCNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQSRKFIVPWVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYALIRGYRGVKPLLYVDQYGCDYTGGLADGLEAYADKTLQEMKALFPIWSQELPFDVTVAWHVVRDPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILRQHNLVDIMSCFYMEADAVVNAFYGVDLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYETGDLLAQSSGVLPVNPVLHTKSAAGYGGFGCKDSFTLYGQTVVYFGGCVYWSPARNIWIPILKSSVKSYDGLVYTGVVGCKAIVKETNLICKALYLDYVQHKCGNLHQRELLGVSDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKICHAVVSKSKELLDVSLDSLSAAIHYLNSKIVDLAQHFSDFGTSFVSKIVHFFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKNIPRYASAVAQAFRSVAKVVLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCGYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLEESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEMSDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFLLSLVCFIGLWCLMPTYTVHKSDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVVDQDLGSTVFNVPTKVLRYGYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFAMADGSPQPYCYTEGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFAYCRRLGTSVRSDGTFEEMALTTFMITKDSYCKLKNSLSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLVIDALASMTGVSLETLLAAIKRLKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLVKGIVCWIMASTFLFSCIITAFVKWTMFMYVTTNMLSITFCALCVISLAMLLVKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVEYTYTDEVIYGMLLLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILLMLASLFGTYTWTTALSMAAAKVIAKWVAVNVLYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARSSGSANQQQLKQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQTIQDSDGTNKQLNEISDDCNWPLVIIANRHNEVSATVLQNNELMPAKLKTQVVNSGPDQTCNTPTQCYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGIKDPVSYVLTHDVCQVCGFWRDGSCSCVSTDTTVQSKDTNFLNGFGVRV", "sequence_length": 4383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f40b354462db645b57f9bc71b7743d9394f4b82ae4ff5fffc222e5186f6466e6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6T8.json", "taxon_id": "233262", "uniprot_accession": "P0C6T8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bovine coronavirus (strain 98TXSF-110-LUN)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-nab-pf16251.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-nab-pf16251.yaml" } ], "pfam_ids": [ "PF01661", "PF01831", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11963", "PF16251", "PF16348", "PF19213", "PF19217", "PF19218", "PF22104" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMVDCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRGCNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQSRKFIVPWVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYALIRGYRGVKPLLYVDQYGCDYTGGLADGLEAYADKTLQEMKALFPIWSQELPFDVTVAWHVVRDPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILRQHNLVDIMSCFYMEADAVVNAFYGVDLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYETGDLLAQSSGVLPVNPVLHTKSAAGYGGFGCKDSFTLYGQTVVYFGGCVYWSPARNIWIPILKSSVKSYDGLVYTGVVGCKAIVKETNLICKALYLDYVQHKCGNLHQRELLGVSDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKICHAVVSKSKELLDVSLDSLSAAIHYLNSKIVDLAQHFSDFGTSFVSKIVHFFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKNIPRYASAVAQAFRSVAKVVLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCGYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVVDAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLEESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEMSDFADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVVPQGGYVADFAYWFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRVTSITSDKFDFIIGHGMSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVVPEGWRVVNKFYQINGVRTVKYFECPGGIDICSQDKVFGYVQQGSFNKATVAQIKALFLDKVDILLTVDGVNFTNRFVPVGENFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKCGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKLPKGVGSANIFKGDKVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTYFNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANDLSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFLLSLVCFIGLWCLMPTYTVHKSDFQLPVYTSYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVVDQDLGSTVFNVPTKVLRYGYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFAMADGSPQPYCYTEGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFAYCRRLGTSVRSDGTFEEMALTTFMITKDSYCKLKNSLSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLVIDALASMTGVSLETLLAAIKRLKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLVKGIVCWIMASTFLFSCIITAFVKWTMFMYVTTNMLSITFCALCVISLAMLLVKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVEYTYTDEVIYGMLLLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILLMLASLFGTYTWTTALSMAAAKVIAKWVAVNVLYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARSSGSANQQQLKQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQTIQDSDGTNKQLNEISDDCNWPLVIIANRHNEVSATVLQNNELMPAKLKTQVVNSGPDQTCNTPTQCYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGIKDPVSYVLTHDVCQVCGFWRDGSCSCVSTDTTVQSKDTNFLNGFGVRV", "sequence_length": 4383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0baf472314e898303e4ef5af469a7a1df5b0e3b4016224acbc79605027811799", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6T9.json", "taxon_id": "233264", "uniprot_accession": "P0C6T9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human coronavirus HKU1 (isolate N2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp4-c-pf16348.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16348", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp4-c-pf16348.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp7-pf08716.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08716", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp7-pf08716.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp8-pf08717.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08717", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp8-pf08717.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp9-pf08710.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08710", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp9-pf08710.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/b-cov-a-nsp1-pf11963.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11963", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/b-cov-a-nsp1-pf11963.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp10-pf09401.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09401", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp10-pf09401.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp3-c-pf19218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp3-c-pf19218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp4-n-pf19217.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp4-n-pf19217.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp6-pf19213.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19213", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp6-pf19213.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-peptidase-pf08715.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08715", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-peptidase-pf08715.yaml" } ], "pfam_ids": [ "PF01661", "PF01831", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11963", "PF16251", "PF16348", "PF19213", "PF19217", "PF19218", "PF22104" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKIDCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPLHSLGGFPKGYVMGLFRSYKTKRYVVHHLSMTTSTTNFGEDFLGWIVPFGFMPSYVHKWFQFCRLYIEESDLIISNFKFDDYDFSVEDAYAEVHAEPKGKYSQKAYALLRQYRGIKPVLFVDQYGCDYSGKLADCLQAYGHYSLQDMRQKQSVWLANCDFDIVVAWHVVRDSRFVMRLQTIATICGIKYVAQPTEDVVDGAVVIREPVHLLSADAIVLKLPSLMKVMTHMDDFSIKSIYNVDLCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSSEVKAQSSGVIPENPVLFTNSTDTVNPDSFNLYGYSVTPFGSCIYWSPRPGLWIPIIKSSVKSYDDLVYSGVVGCKSIVKETALITHALYLDYVQCKCGNLEQNHILGVNNSWCRQLLLNRGDYNMLLKNIDLFVKRRADFACKFAVCGDGFVPFLLDGLIPRSYYLIQSGIFFTSLMSQFSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDASAPATGWLLYQLLNGLFVVSQANFNFVALIPDYAKILVNKFYTFFKLLLECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLIPGFVLPCNAQEQQIYFFEGVAESVIVEDDVIENVKSSLSSYEYCQPPKSVEKICIIDNMYMGKCGDKFFPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEEIVTGDNDDQIVVTGDDVDDIESVYDFDTYKALLVFNDVYNDALFVSYGSSVETETYFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIPKAIVLPQGGYVADFAYWFLNQFDINAYANWCCLKCGFSFDLNGLDAVFFYGDIVSHVCKCGHNMTLIAADLPCTLHFSLFDDNFCAFCTPKKIFIAACAVDVNVCHSVAVIGDEQIDGKFVTKFSGDKFDFIVGYGMSFSMSSFELAQLYGLCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTKALAVRLTANVGRVIKFETDAYKLFLSGDDCFVSNSSVIQEVLLLRHDIQLNNDVRDYLLSKMTSLPKDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLAKKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLSLADISAVQSSFGFDQQQLLAYYNFLTVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQHINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAICELELICDCGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIVHCTKLNVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTKPIIKAQFKPFAKVDGVYTNFKLVGHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFKGCETFGKPVIWLCHDEASLNSLTYFNKPSFKSENRYSVLSVDSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRDDNQTLLVPKIFKARAIEFYGFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNLFCLALKNAFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTICDFYSKLGVGFTSHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDADRANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKACVKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFILLWALLPTYSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSFYYHNSMDCPIVVAVMDEDIGSTMFNVPTKVLRHGFHVLHFLTYAFASDSVQCYTPHIQISYNDFYASGCVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVISEGIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFYQFFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVIANHVLWLFSYCRKIGVNVCNDSTFEETSLTTFMITKDSYCRLKNSVSDVAYNRYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVKMVSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLGDFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKADLVLDALASMTGVSIETLLAAIKRLYMGFQGRQILGSCTFEDELAPSDVYQQLAGVKLQSKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYINTHMIGVTLCVLCFVSFMMLLVKHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGLTYVWLSYFVPAVNFTYVYEVFYGCILCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLFITAFLGTYTWTTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFRMPMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDVKCANVVLLNCLQHLHVASNSRLWQYCSILHNEILSTSDLSVAFDKLAQLLIVLFANPAAVDTKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIKQLEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPALAANTLTIIIPDKQVFDKVVDNVYVAYAGSVWHIQTVQDADGINKQLTDISVDSNWPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNSGSDMNCNIPTQCYYNNGSSGRIVYAVLSDVDGLKYTKIIKDDGNCVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPLGIKDPILYVLTHDVCQVCGFWRDGSCSCVGSGVAVQSKDLNFLNGFGVLV", "sequence_length": 4441, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "46454a6a12fef637220dcb30723d5709ed239f05a21f959a01717bdb527a00cd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6U4.json", "taxon_id": "443240", "uniprot_accession": "P0C6U4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human coronavirus NL63", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp2-n-pf19211.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19211", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp2-n-pf19211.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF16348", "PF19211", "PF19212", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFYNQVTLAVASDSEISGFGFAIPSVAVRTYSEAAAQGFQACRFVAFGLQDCVTGINDDDYVIALTGTNQLCAKILPFSDRPLNLRGWLIFSNSNYVLQDFDVVFGHGAGSVVFVDKYMCGFDGKPVLPKNMWEFRDYFNNNTDSIVIGGVTYQLAWDVIRKDLSYEQQNVLAIESIHYLGTTGHTLKSGCKLTNAKPPKYSSKVVLSGEWNAVYRAFGSPFITNGMSLLDIIVKPVFFNAFVKCNCGSESWSVGAWDGYLSSCCGTPAKKLCVVPGNVVPGDVIITSTSAGCGVKYYAGLVVKHITNITGVSLWRVTAVHSDGMFVASSSYDALLHRNSLDPFCFDVNTLLSNQLRLAFLGASVTEDVKFAASTGVIDISAGMFGLYDDILTNNKPWFVRKASGLFDAIWDAFVAAIKLVPTTTGVLVRFVKSIASTVLTVSNGVIIMCADVPDAFQSVYRTFTQAICAAFDFSLDVFKIGDVKFKRLGDYVLTENALVRLTTEVVRGVRDARIKKAMFTKVVVGPTTEVKFSVIELATVNLRLVDCAPVVCPKGKIVVIAGQAFFYSGGFYRFMVDPTTVLNDPVFTGDLFYTIKFSGFKLDGFNHQFVTASSATDAIIAVELLLLDFKTAVFVYTCVVDGCSVIVRRDATFATHVCFKDCYNVWEQFCIDNCGEPWFLTDYNAILQSNNPQCAIVQASESKVLLERFLPKCPEILLSIDDGHLWNLFVEKFNFVTDWLKTLKLTLTSNGLLGNCAKRFRRVLVKLLDVYNGFLETVCSVAYTAGVCIKYYAVNVPYVVISGFVSRVIRRERCDMTFPCVSCVTFFYEFLDTCFGVSKPNAIDVEHLELKETVFVEPKDGGQFFVSGDYLWYVVDDIYYPASCNGVLPVAFTKLAGGKISFSDDVIVHDVEPTHKVKLIFEFEDDVVTSLCKKSFGKSIIYTGDWEGLHEVLTSAMNVIGQHIKLPQFYIYDEEGGYDVSKPVMISQWPISNDSNGCVVEASTDFHQLECIVDDSVREEVDIIEQPFEEVEHVLSIKQPFSFSFRDELGVRVLDQSDNNCWISTTLVQLQLTKLLDDSIEMQLFKVGKVDSIVQKCYELSHLISGSLGDSGKLLSELLKEKYTCSITFEMSCDCGKKFDDQVGCLFWIMPYTKLFQKGECCICHKMQTYKLVSMKGTGVFVQDPAPIDIDAFPVKPICSSVYLGVKGSGHYQTNLYSFNKAIDGFGVFDIKNSSVNTVCFVDVDFHSVEIEAGEVKPFAVYKNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLECEKFNVFNVVGPRTGKHEHSLLVEAYNSILFENGIPLMPLLSCGIFGVRIENSLKALFSCDINKPLQVFVYSSNEEQAVLKFLDGLDLTPVIDDVDVVKPFRVEGNFSFFDCGVNALDGDIYLLFTNSILMLDKQGQLLDTKLNGILQQAALDYLATVKTVPAGNLVKLFVESCTIYMCVVPSINDLSFDKNLGRCVRKLNRLKTCVIANVPAIDVLKKLLSSLTLTVKFVVESNVMDVNDCFKNDNVVLKITEDGINVKDVVVESSKSLGKQLGVVSDGVDSFEGVLPINTDTVLSVAPEVDWVAFYGFEKAALFASLDVKPYGYPNDFVGGFRVLGTTDNNCWVNATCIILQYLKPTFKSKGLNVLWNKFVTGDVGPFVSFIYFITMSSKGQKGDAEEALSKLSEYLISDSIVTLEQYSTCDICKSTVVEVKSAIVCASVLKDGCDVGFCPHRHKLRSRVKFVNGRVVITNVGEPIISQPSKLLNGIAYTTFSGSFDNGHYVVYDAANNAVYDGARLFSSDLSTLAVTAIVVVGGCVTSNVPTIVSEKISVMDKLDTGAQKFFQFGDFVMNNIVLFLTWLLSMFSLLRTSIMKHDIKVIAKAPKRTGVILTRSFKYNIRSALFVIKQKWCVIVTLFKFLLLLYAIYALVFMIVQFSPFNSLLCGDIVSGYEKSTFNKDIYCGNSMVCKMCLFSYQEFNDLDHTSLVWKHIRDPILISLQPFVILVILLIFGNMYLRFGLLYFVAQFISTFGSFLGFHQKQWFLHFVPFDVLCNEFLATFIVCKIVLFVRHIIVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNANGGTCFCNKHNFFCVNCDSFGPGNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNGFYRLYSGDTFWRYDFDITESKYSCKEVLKNCNVLENFIVYNNSGSNITQIKNACVYFSQLLCEPIKLVNSELLSTLSVDFNGVLHKAYVDVLCNSFFKELTANMSMAECKATLGLTVSDDDFVSAVANAHRYDVLLSDLSFNNFFISYAKPEDKLSVYDIACCMRAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKYLVKTTKAKGLTFLLTFNDNQAITQVPATSIVAKQGAGFKRTYNFLWYVCLFVVALFIGVSFIDYTTTVTSFHGYDFKYIENGQLKVFEAPLHCVRNVFDNFNQWHEAKFGVVTTNSDKCPIVVGVSERINVVPGVPTNVYLVGKTLVFTLQAAFGNTGVCYDFDGVTTSDKCIFNSACTRLEGLGGDNVYCYNTDLIEGSKPYSTLQPNAYYKYDAKNYVRFPEILARGFGLRTIRTLATRYCRVGECRDSHKGVCFGFDKWYVNDGRVDDGYICGDGLIDLLVNVLSIFSSSFSVVAMSGHMLFNFLFAAFITFLCFLVTKFKRVFGDLSYGVFTVVCATLINNISYVVTQNLFFMLLYAILYFVFTRTVRYAWIWHIAYIVAYFLLIPWWLLTWFSFAAFLELLPNVFKLKISTQLFEGDKFIGTFESAAAGTFVLDMRSYERLINTISPEKLKNYAASYNKYKYYSGSASEADYRCACYAHLAKAMLDYAKDHNDMLYSPPTISYNSTLQSGLKKMAQPSGCVERCVVRVCYGSTVLNGVWLGDTVTCPRHVIAPSTTVLIDYDHAYSTMRLHNFSVSHNGVFLGVVGVTMHGSVLRIKVSQSNVHTPKHVFKTLKPGDSFNILACYEGIASGVFGVNLRTNFTIKGSFINGACGSPGYNVRNDGTVEFCYLHQIELGSGAHVGSDFTGSVYGNFDDQPSLQVESANLMLSDNVVAFLYAALLNGCRWWLCSTRVNVDGFNEWAMANGYTSVSSVECYSILAAKTGVSVEQLLASIQHLHEGFGGKNILGYSSLCDEFTLAEVVKQMYGVNLQSGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQSKLTDLKCTNVVLLGCLSSMNIAANSSEWAYCVDLHNKINLCDDPEKAQSMLLALLAFFLSKHSDFGLDGLIDSYFDNSSTLQSVASSFVSMPSYIAYENARQAYEDAIANGSSSQLIKQLKRAMNIAKSEFDHEISVQKKINRMAEQAATQMYKEARSVNRKSKVISAMHSLLFGMLRRLDMSSVETVLNLARDGVVPLSVIPATSASKLTIVSPDLESYSKIVCDGSVHYAGVVWTLNDVKDNDGRPVHVKEITKENVETLTWPLILNCERVVKLQNNEIMPGKLKQKPMKAEGDGGVLGDGNALYNTEGGKTFMYAYISNKADLKFVKWEYEGGCNTIELDSPCRFMVETPNGPQVKYLYFVKNLNTLRRGAVLGFIGATIRLQAGKQTELAVNSGLLTACAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVDANTNQDSYGGASICLYCRAHVPHPSMDGYCKFKGKCVQVPIGCLDPIRFCLENNVCNVCGCWLGHGCACDRTTIQSVDISYLNEQGVLVQLD", "sequence_length": 4060, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "268991e1f05e1d43ed1dae7dd5a7b66ba7e4d8586553dd07333d0a176aac949a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6U6.json", "taxon_id": "277944", "uniprot_accession": "P0C6U6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Human coronavirus OC43", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/b-cov-a-nsp1-pf11963.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11963", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/b-cov-a-nsp1-pf11963.yaml" } ], "pfam_ids": [ "PF01661", "PF01831", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11963", "PF16251", "PF16348", "PF19213", "PF19217", "PF19218", "PF22104" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMVDCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRGCNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQSRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYALIRGYRGVKPLLYVDQYGCDYTGSLADGLEAYADKTLQEMKALFPTWSQELPFDVIVAWHVVRDPRYVMRLQSAATICSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILRQYNLFDIMSHFYMEADTVVNAFYGVALKDCGFVMQFGYIDCEQDSCDFKGWIPGNMIDGFACTTCGHVYEVGDLIAQSSGVLPVNPVLHTKSAAGYGGFGCKDSFTLYGQTVVYFGGCVYWSPARNIWIPILKSSVKSYDSLVYTGVLGCKAIVKETNLICKALYLDYVQHKCGNLHQRELLGVSDVWHKQLLINRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKLCHAVVSKSKELLDVSLDSLGAAIHYLNSKIVDLAQHFSDFGTSFVSKIVHFFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKNIPRYASAVAQAFQSVAKVVLDSLRVTFIDGLSCFKIGRRRICLSGRKIYEVERGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCGYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDDHVGLLDQAWRVPCAGRRVTFKEQPTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPEDDDFLEESDVEEDDVEGEETDLTITSAGQPCVASEQEESSEVLEDTLDDGPSVETSDSQVEEDVEMSDFVDLESVIQDYENVCFEFYTTEPEFVKVLGLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVNKIPANIVLPQGGYVADFAYWFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHICKCGESMVLIDVDVPFTAHFALKDKLFCAFITKRIVYKAACVVDVNDSHSMAVVDGKQIDDHRITSITSDKFDFIIGHGMSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVKSKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLISAGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAARLSFNVGRSIVYETDANKLILINDVAFVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDVLPEGWRVVNKFYQINGVRTVKYFECTGGIDICSQDKVFGYVQQGIFNKATVAQIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYNMLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSLHLTFKIVQWQEAWLEFRSGRPARFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACKCGVKQEQRTGLDAVMHFGTLSREDLEIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKLPKGVGSANIFIGDNVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTVCDSLNSKLGFDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYERGCITFGKPVIWLSHEKASLNSLTYFNRPLLVDDNKFDVLKVDDVDDSGDSSESGAKETKEINIIKLSGVKKPFKVEDSVIVNDDTSETKYVKSLSIVDVYDMWLTGCKYVVRTANALSRAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPAVNVVKAVRNKTSACFNFIKWLFVLLFGWIKISADNKVIYTTEIASKLTCKLVALAFKNAFLTFKWSMVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSFRLLVALANMLPAHVFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCSMRLFYDRDGQRIYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQIYKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKSDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFVLSLVCFIGLWCLMPTYTVHKSDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVIDQDFGSTVFNVPTKVLRYGYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFTMADGSPQPYCYTDGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRVVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSVVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYIAVVVSNHAFWVFSYCRKLGTSVRSDGTFEEMALTTFMITKDSYCKLKNSLSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMRGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPIQDYIQSVNFLAWLYAAILNNCNWFIQSDKCSVEDFNVWALSNGFSQVKSDLVIDALASMTGVSLETLLAAIKRLKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLFKGTVCWIMASTFLFSCIITAFVKWTMFMYVTTNMFSITFCALCVISLAMLLVKHKHLYLTMYITPVLFTLLYNNYLVVYKHTFRGYVYAWLSYYVPSVEYTYTDEVIYGMLLLVGMVFVTLRSINHDLFSFIMFVGRLISVFSLWYKGSNLEEEILLMLASLFGTYTWTTVLSMAVAKVIAKWVAVNVLYFTDIPQIKIVLLCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWHYCSTLHNEILATSDLSVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARFSGSANQQQLKQLEKACNIAKSAYERDRAVAKKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLNIIVPDKSVYDQIVDNIYVTYAGNVWQIQTIQDSDGTNKQLNEISDDCNWPLVIIANRYNEVSATVLQNNELMPAKLKIQVVNSGPDQTCNTPTQCYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVVLELDPPCKFTVQDAKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGIKDPVSYVLTHDVCRVCGFWRDGSCSCVSTDTTVQSKDTNFLNGFGVRV", "sequence_length": 4383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "77e1c894066637a2d10c47e433f4403665030e09765ecd3cbbe944d76807a6b3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6U7.json", "taxon_id": "31631", "uniprot_accession": "P0C6U7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Severe acute respiratory syndrome coronavirus", "origins": [ { "cited_uniprot_accession": "P0C6U8", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/hexachlorophene.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:5693", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/hexachlorophene.yaml" }, { "cited_uniprot_accession": "P0C6U8", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antifungal/bithionol.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:3131", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antifungal/bithionol.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF16251", "PF16348", "PF19211", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRNVLLRKNGNKGAGGHSYGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGGAVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIAWFTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGYLPTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKRAYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILASFSASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQAAGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMAYVTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDIVKGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQCIRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAIVGTPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGGAPIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKIVSTCFKLMLKATLLCVLAALVCYIVMPVHTLSIHDGYTNEIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQRGGSYKNDKSCPVVAAIITREIGFIVPGLPGTVLRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVLNNEHYRALSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFSTFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNALDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINRLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPLMQSADASTFLNGFAV", "sequence_length": 4382, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d710bcffd7faf91019592cf236162bcd7d2c892820a6b5c0a91632cc3d51225c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6U8.json", "taxon_id": "694009", "uniprot_accession": "P0C6U8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porcine transmissible gastroenteritis coronavirus (strain Purdue)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cnv-replicase-n-pf16688.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16688", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cnv-replicase-n-pf16688.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp2-n-pf19211.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19211", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp2-n-pf19211.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF16348", "PF16688", "PF19211", "PF19212", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSKQFKILVNEDYQVNVPSLPIRDVLQEIKYCYRNGFEGYVFVPEYCRDLVDCDRKDHYVIGVLGNGVSDLKPVLLTEPSVMLQGFIVRANCNGVLEDFDLKIARTGRGAIYVDQYMCGADGKPVIEGDFKDYFGDEDIIEFEGEEYHCAWTTVRDEKPLNQQTLFTIQEIQYNLDIPHKLPNCATRHVAPPVKKNSKIVLSEDYKKLYDIFGSPFMGNGDCLSKCFDTLHFIAATLRCPCGSESSGVGDWTGFKTACCGLSGKVKGVTLGDIKPGDAVVTSMSAGKGVKFFANCVLQYAGDVEGVSIWKVIKTFTVDETVCTPGFEGELNDFIKPESKSLVACSVKRAFITGDIDDAVHDCIITGKLDLSTNLFGNVGLLFKKTPWFVQKCGALFVDAWKVVEELCGSLTLTYKQIYEVVASLCTSAFTIVNYKPTFVVPDNRVKDLVDKCVKVLVKAFDVFTQIITIAGIEAKCFVLGAKYLLFNNALVKLVSVKILGKKQKGLECAFFATSLVGATVNVTPKRTETATISLNKVDDVVAPGEGYIVIVGDMAFYKSGEYYFMMSSPNFVLTNNVFKAVKVPSYDIVYDVDNDTKSKMIAKLGSSFEYDGDIDAAIVKVNELLIEFRQQSLCFRAFKDDKSIFVEAYFKKYKMPACLAKHIGLWNIIKKDSCKRGFLNLFNHLNELEDIKETNIQAIKNILCPDPLLDLDYGAIWYNCMPGCSDPSVLGSVQLLIGNGVKVVCDGCKGFANQLSKGYNKLCNAARNDIEIGGIPFSTFKTPTNTFIEMTDAIYSVIEQGKALSFRDADVPVVDNGTISTADWSEPILLEPAEYVKPKNNGNVIVIAGYTFYKDEDEHFYPYGFGKIVQRMYNKMGGGDKTVSFSEEVDVQEIAPVTRVKLEFEFDNEIVTGVLERAIGTRYKFTGTTWEEFEESISEELDAIFDTLANQGVELEGYFIYDTCGGFDIKNPDGIMISQYDINITADEKSEVSASSEEEEVESVEEDPENEIVEASEGAEGTSSQEEVETVEVADITSTEEDVDIVEVSAKDDPWAAAVDVQEAEQFNPSLPPFKTTNLNGKIILKQGDNNCWINACCYQLQAFDFFNNEAWEKFKKGDVMDFVNLCYAATTLARGHSGDAEYLLELMLNDYSTAKIVLAAKCGCGEKEIVLERAVFKLTPLKESFNYGVCGDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVKPVMHAVYTGTTQNGHYMVDDIEHGYCVDGMGIKPLKKRCYTSTLFINANVMTRAEKPKQEFKVEKVEQQPIVEENKSSIEKEEIQSPKNDDLILPFYKAGKLSFYQGALDVLINFLEPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFFENVIEHLSVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIFNVRLETSLQCLLKTVNDRGLNVFVYTDQERQTIENFFSCSIPVNVTEDNVNHERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVIKAIDIDWQAHYGFRDAAAFSASSHDAYKFEVVTHSNFIVHKQTDNNCWINAICLALQRLKPQWKFPGVRGLWNEFLERKTQGFVHMLYHISGVKKGEPGDAELMLHKLGDLMDNDCEIIVTHTTACDKCAKVEKFVGPVVAAPLAIHGTDETCVHGVSVNVKVTQIKGTVAITSLIGPIIGEVLEATGYICYSGSNRNGHYTYYDNRNGLVVDAEKAYHFNRDLLQVTTAIASNFVVKKPQAEERPKNCAFNKVAASPKIVQEQKLLAIESGANYALTEFGRYADMFFMAGDKILRLLLEVFKYLLVLFMCLRSTKMPKVKVKPPLAFKDFGAKVRTLNYMRQLNKPSVWRYAKLVLLLIAIYNFFYLFVSIPVVHKLTCNGAVQAYKNSSFIKSAVCGNSILCKACLASYDELADFQHLQVTWDFKSDPLWNRLVQLSYFAFLAVFGNNYVRCFLMYFVSQYLNLWLSYFGYVEYSWFLHVVNFESISAEFVIVVIVVKAVLALKHIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYRFYVGDEFTSYDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANVRNACVYFSQLIGKPIKIVNSDLLEDLSVDFKGALFNAKKNVIKNSFNVDVSECKNLDECYRACNLNVSFSTFEMAVNNAHRFGILITDRSFNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFNAVGSDDDLPYERFTESVSPKSGSGFFDVITQLKQIVILVFVFIFICGLCSVYSVATQSYIESAEGYDYMVIKNGIVQPFDDTISCVHNTYKGFGDWFKAKYGFIPTFGKSCPIVVGTVFDLENMRPIPDVPAYVSIVGRSLVFAINAAFGVTNMCYDHTGNAVSKDSYFDTCVFNTACTTLTGLGGTIVYCAKQGLVEGAKLYSDLMPDYYYEHASGNMVKLPAIIRGLGLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVYDNEFGNGYICGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDCTFLIVMIIVTLVVNNVSYFVTQNTFFMIIYAIVYYFITRKLAYPGILDAGFIIAYINMAPWYVITAYILVFLYDSLPSLFKLKVSTNLFEGDKFVGNFESAAMGTFVIDMRSYETIVNSTSIARIKSYANSFNKYKYYTGSMGEADYRMACYAHLGKALMDYSVNRTDMLYTPPTVSVNSTLQSGLRKMAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVIASDTTRVINYENEMSSVRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFTELSSTDAFSMLAAKTGQSVEKLLDSIVRLNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQAGKVKSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTTLISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNMVKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVIASYRIAYYIVVCVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQSKLTEMKCTNVVLLGLLSKMHVESNSKEWNYCVGLHNEINLCDDPEIVLEKLLALIAFFLSKHNTCDLSELIESYFENTTILQSVASAYAALPSWIALEKARADLEEAKKNDVSPQILKQLTKAFNIAKSDFEREASVQKKLDKMAEQAAASMYKEARAVDRKSKIVSAMHSLLFGMLKKLDMSSVNTIIDQARNGVLPLSIIPAASATRLVVITPSLEVFSKIRQENNVHYAGAIWTIVEVKDANGSHVHLKEVTAANELNLTWPLSITCERTTKLQNNEIMPGKLKERAVRASATLDGEAFGSGKALMASESGKSFMYAFIASDNNLKYVKWESNNDIIPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRLQAGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGVEANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTGTQDPIRFCIENEVCVVCGCWLNNGCMCDRTSMQSFTVDQSYLNECGVLVQLD", "sequence_length": 4017, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "329c8ac13f05893d5fa73dabcf6a3d41dce84777d8e8183302f6b2efdbc38572", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6V2.json", "taxon_id": "11151", "uniprot_accession": "P0C6V2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porcine epidemic diarrhea virus (strain CV777)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-nsp2-c-pf19212.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19212", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-nsp2-c-pf19212.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF16348", "PF19211", "PF19212", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASNHVTLAFANDAEISAFGFCTASEAVSYYSEAAASGFMQCRFVSLDLADTVEGLLPEDYVMVVIGTTKLSAYVDTFGSRPRNICGWLLFSNCNYFLEELELTFGRRGGNIVPVDQYMCGADGKPVLQESEWEYTDFFADSEDGQLNIAGITYVKAWIVERSDVSYASQNLTSIKSITYCSTYEHTFLDGTAMKVARTPKIKKNVVLSEPLATIYREIGSPFVDNGSDARSIIRRPVFLHAFVKCKCGSYHWTVGDWTSYVSTCCGFKCKPVLVASCSAMPGSVVVTRAGAGTGVKYYNNMFLRHVADIDGLAFWRILKVQSKDDLACSGKFLEHHEEGFTDPCYFLNDSSLATKLKFDILSGKFSDEVKQAIIAGHVVVGSALVDIVDDALGQPWFIRKLGDLASAPWEQLKAVVRGLGLLSDEVVLFGKRLSCATLSIVNGVFEFLADVPEKLAAAVTVFVNFLNEFFESACDCLKVGGKTFNKVGSYVLFDNALVKLVKAKARGPRQAGICEVRYTSLVVGSTTKVVSKRVENANVNLVVVDEDVTLNTTGRTVVVDGLAFFESDGFYRHLADADVVIEHPVYKSACELKPVFECDPIPDFPLPVAASVAELCVQTDLLLKNYNTPYKTYSCVVRGDKCCITCTLQFKAPSYVEDAVNFVDLCTKNIGTAGFHEFYITAHEQQDLQGFLTTCCTMSGFECFMPTIPQCPAVLEEIDGGSIWRSFITGLNTMWDFCKRLKVSFGLDGIVVTVARKFKRLGALLAEMYNTYLSTVVENLVLAGVSFKYYATSVPKIVLGGCFHSVKSVFASVFQIPVQAGIEKFKVFLNCVHPVVPRVIETSFVELEETTFKPPALNGGIAIVDGFAFYYDGTLYYPTDGNSVVPICFKKKGGGDVKFSDEVSVKTIDPVYKVSLEFEFESETIMAVLNKAVGNRIKVTGGWDDVVEYINVAIEVLKDHVEVPKYYIYDEEGGTDPNLPVMVSQWPLNDDTISQDLLDVEVVTDAPIDSEGDEVDSSAPEKVADVANSEPGDDGLPVAPETNVESEVEEVAATLSFIKDTPSTVTKDPFAFDFVSYGGLKVLRQSHNNCWVTSTLVQLQLLGIVDDPAMELFSAGRVGPMVRKCYESQKAILGSLGDVSACLESLTKDLHTLKITCSVVCGCGTGERIYEGCAFRMTPTLEPFPYGACAQCAQVLMHTFKSIVGTGIFCRDTTALSLDSLVVKPLCAAAFIGKDSGHYVTNFYDAAMAIDGYGRHQIKYDTLNTICVKDVNWTAPLVPAVDSVVEPVVKPFYSYKNVDFYQGDFSDLVKLPCDFVVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEALGLKVFNVVGPRKGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEESLSAFLACVGDRHCKCFCYGDKEREAIIKYMDGLVDAIFKEALVDTTPVQEDVQQVSQKPVLPNFEPFRIEGAHAFYECNPEGLMSLGADKLVLFTNSNLDFCSVGKCLNDVTSGALLEAINVFKKSNKTVPAGNCVTLDCANMISITMVVLPFDGDANYDKNYARAVVKVSKLKGKLVLAVDDATLYSKLSHLSVLGFVSTPDDVERFYANKSVVIKVTEDTRSVKAVKVESTATYGQQIGPCLVNDTVVTDNKPVVADVVAKVVPNANWDSHYGFDKAGEFHMLDHTGFTFPSEVVNGRRVIKTTDNNCWVNVTCLQLQFARFRFKSAGLQAMWESYCTGDVAMFVHWLYWLTGVDKGQPSDSENALNMLSKYIVPAGSVTIERVTHDGCCCSKRVVTAPVVNASVLKLGVEDGLCPHGLNYIGKVVVVKGTTIVVNVGKPVVAPSHLFLKGVSYTTFLDNGNGVVGHYTVFDHGTGMVHDGDAFVPGDLNVSPVTNVVVSEQTAVVIKDPVKKAELDATKLLDTMNYASERFFSFGDFMSRNLITVFLYILSILGLCFRAFRKRDVKVLAGVPQRTGIILRKSMRYNAKALGVFFKLKLYWFKVLGKFSLGIYALYALLFMTIRFTPIGSPVCDDVVAGYANSSFDKNEYCNSVICKVCLYGYQELSDFSHTQVVWQHLRDPLIGNVMPFFYLAFLAIFGGVYVKAITLYFIFQYLNSLGVFLGLQQSIWFLQLVPFDVFGDEIVVFFIVTRVLMFIKHVCLGCDKASCVACSKSARLKRVPVQTIFQGTSKSFYVHANGGSKFCKKHNFFCLNCDSYGPGCTFINDVIATEVGNVVKLNVQPTGPATILIDKVEFSNGFYYLYSGDTFWKYNFDITDSKYTCKEALKNCSIITDFIVFNNNGSNVNQVKNACVYFSQMLCKPVKLVDSALLASLSVDFGASLHSAFVSVLSNSFGKDLSSCNDMQDCKSTLGFDDVPLDTFNAAVAEAHRYDVLLTDMSFNNFTTSYAKPEEKFPVHDIATCMRVGAKIVNHNVLVKDSIPVVWLVRDFIALSEETRKYIIRTTKVKGITFMLTFNDCRMHTTIPTVCIANKKGAGLPSFSKVKKFFWFLCLFIVAAFFALSFLDFSTQVSSDSDYDFKYIESGQLKTFDNPLSCVHNVFINFDQWHDAKFGFTPVNNPSCPIVVGVSDEARTVPGIPAGVYLAGKTLVFAINTIFGTSGLCFDASGVADKGACIFNSACTTLSGLGGTAVYCYKNGLVEGAKLYSELAPHSYYKMVDGNAVSLPEIISRGFGIRTIRTKAMTYCRVGQCVQSAEGVCFGADRFFVYNAESGSDFVCGTGLFTLLMNVISVFSKTVPVTVLSGQILFNCIIAFVAVAVCFLFTKFKRMFGDMSVGVFTVGACTLLNNVSYIVTQNTLGMLGYATLYFLCTKGVRYMWIWHLGFLISYILIAPWWVLMVYAFSAIFEFMPNLFKLKVSTQLFEGDKFVGSFENAAAGTFVLDMHAYERLANSISTEKLRQYASTYNKYKYYSGSASEADYRLACFAHLAKAMMDYASNHNDTLYTPPTVSYNSTLQAGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDIVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVSATMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGHTSLTDEFTTGEVVRQMYGVNLQGGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPASSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKVAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQSKLTDIKCSNVVLLGCLSSMNVSANSTEWAYCVDLHNKINLCNDPEKAQEMLLALLAFFLSKNSAFGLDDLLESYFNDNSMLQSVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQNNEIIPGKLKQRSIKAEGDGIVGEGKALYNNEGGRTFMYAFISDKPDLRVVKWEFDGGCNTIELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRGAVLGYIGATVRLQAGKQTEQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVGNCVKMLANGSGNGQAVTNGVEASTNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQVPLGTVDPIRFVLENDVCKVCGCWLSNGCTCDRSIMQSTDMAYLNEYGALVQLD", "sequence_length": 4117, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "796af9bb2f7b6d9e5da90750899dd9ebd7109b53bf73f1452b5c6d44a4bd3003", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6V6.json", "taxon_id": "229032", "uniprot_accession": "P0C6V6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus 279/2005", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-sud-c-pf12124.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12124", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-sud-c-pf12124.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-sud-m-pf11633.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11633", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-sud-m-pf11633.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp1-pf11501.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11501", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp1-pf11501.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF13087", "PF16251", "PF16348", "PF19211", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLALGVSEKTHVQLSLPVLQVRDVLVRGFGDSVEEALAEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDAQGTNHGYKVVELVAELDGIQYGRSGTTLGVLVPHVGETPVAYRNVLLRKNGNKGAGGHSYGIDLKSYDLGVELGTDPIEDYEQNWNTKHGGGVLRELIRELNGGAFTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVWFTERSEKSYERQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYLPANAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFAYVGCYNKRAYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASFSASTCAFVDTVKGLDYKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSILTPLYGFPSQAAGVIRSIFTRALDTANHSIPDLQRAAITILDGISEQSLRLIDAMVYTSDLLTNSVIVMAYVTGGLVQQITQWLSNMLGTTVDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLVTGVFDIVKGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGAKLRTLNLGEVFIAQSKGLYRQCIRGKEQLQLLMPLRAPKEVTFFEGDSHDTVFTSEEVVLKNGELEALETPVDSFTNGAVIGTPVCVNGLMLLELKDKEQYCALSPGLLATNNVFSLKGGAPVKGVTFGEDTVLEVQGYKNVKITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYEDEEEIPEETCEHEYGTEDDYKGLPLEFGASTEIQQVDEEEEEDWLEEAIAAKPEPEPLPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKATNGAMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYANFNSQDVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYFAVNDQDLYDHVVLGYLDSLKPKVETPTQENLELKEQPAVETLTQENLELEELPVIEKPVDVKFKARIEEVNTSLEETKFLTSRLLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVGDVISSGDITCVIIPAKKAGGTTEMLAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRKCKSVFYVLPSKTPNDKEEILGTVSWNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFLKRGDKVVYHTVGSPIQFHLDGEVLLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPHAKHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRETMTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICGRDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRIDGAYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEVEDTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQAAVTTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAAFGVLLSNLGIPSYCDGVRESYVNSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNAITTKISLKGGKIVSTWFKLMLKATLLCVLAALFCYIIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIMATDDCFANKHAGFDSWFSQRGGSYRNDKSCPVVAAIITREIGFIVPGLPGTVLRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEAGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFSTFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLVLMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSQNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVCTVCGTWKGYGCSCDQLREPMMQSADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNERVAGFAKFLKTNCCRFQEKDEEGNLLDSYFVVKRHTMSNYQHEETIYNLVKECPAVAVHDFFKFRVDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILTLTKALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDVLFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFKAVHYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQAVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKLHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKEKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEVPRRNVATLQAENVTGLFKDCSKIITGLHPTQAPTHLSVDTKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATRDAVGTNLPLQLGFSTGVNLVAVPTGYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVVFVLWAHGFELTSMKYFVKIGPERTCCLCDRRATCFSTSSDTYACWNHSVGFDYVYNPFMIDVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIGDELKINAACRKVQHMVVKSALLADKFSVLHDIGNPKAIKCVPQAEVDWKFYDAQPCSDKAYKIEELFYSYATHHDKFTDGVCLFWNCNVDRYPANAIVCRFDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFTYLKQLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRRHANEYRQYLDAYNMMISAGFSLWIYKQFDTYNLWNTFTRLQSLENVAYNVVNKGHFDGQIGEAPVSIINNAVYTKVDGNDVEIFENKTTLPVNVAFELWAKRNIKPVPEIKILNNLGVDIAANTVIWDYKREAPAHVSTIGVCTMTDIAKKPTESACSSLTVLFDGRVEGQVDLFRNARNGVLITEGSVKGLTPSKGPAQASVNGVTLIGESVKTQFNYFKKVDGIIQQLPETYFTQSRDLEDFKPRSKMETDFLELAMDEFIQRYKLEGYAFEHIVYGDFSHGQLGGLHLMIGLAKRSQDSPLKLEDFIPTDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIKSQDLSVISKVVKVTIDYAEISFMLWCKDGHVETFYPKLQASQAWQPGVAMPNLYKMQRMLLEKCDLQNYGENAVIPKGIMMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGALLVDSDLNDFVSDADSTLIGDCATVHTANKWDLIISDMYDPKTKHVTKENDSKEGFFTYLCGFIKQKLALGGSVAVKITEHSWNADLYKLMGHFSWWTAFVTNVNASSSEAFLIGVNYLGKLREQIDGYTMHANYIFWRNTNPIQLSSYSLFDMSKFPLKLRGTAVMSLKENQINDMIYSLLENGRLIIRENNRVVVSSDILVNN", "sequence_length": 7079, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f861a9431459f19e16b58422ba9f30064821d886f9e79069f0d8ae564804314e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6V9.json", "taxon_id": "389167", "uniprot_accession": "P0C6V9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bat coronavirus HKU4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bcov-sud-m-pf11633.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11633", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bcov-sud-m-pf11633.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp1-pf11501.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11501", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp1-pf11501.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF13087", "PF13604", "PF16251", "PF16348", "PF19211", "PF19212", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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SMAATRGATCVIGTTKFYGGWDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDREIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGHMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQAVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCDVSDVTKLYLGGMSYYCNDHRPVCSFPLCANGLVFGLYKNMCTGSSSIMEFNRLATCDWSDSGDYTLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERELILVWEVGKSKPPLNRNYVFTGYHLTKNSKVQLGEYVFERIDYSDAVSYKSSTTYKLAVGDIFVLTSHSVATLSAPTIVNQERYLKITGIYPTITVPEEFANHVVNFQKAGFSKYVTVQGPPGTGKSHFAIGLAIYYPTARIVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDRFKVNDTNSQYLFSTVNALPEISVDILVVDEVSMCTNYDLSIINSRVKAKHIVYVGDPAQLPAPRTLLIRGTLEPENFNSVTRLMCNLGPDIFLSVCYRCPKEIVSTVSALVYNNKLSAKKDASGQCFKILFKGSVTHDASSAINRPQLNFVKTFIAANPNWSKAVFISPYNSQNAVARSMLGLTTQTVDSSQGSEYPYVIFCQTADTAHANNLNRFNVAVTRAQKGILCVMTSQVLFDSLEFAELSLNNYKLQSQIVTGLFKDCSREDTGLPPAYAPTYLSVDAKYKTTDELCVNLNITPNVTYSRVISRMGFKLDATIPGYPKLFITRDEAIRQVRSWVGFDVEGAHASRNACGTNVPLQLGFSTGVNFVVQPVGVVDTEWGSMLTTISARPPPGEQFKHLVPLMNKGATWPIVRRRIVQMLSDTLDKLSDYCTFVCWAHGFELTSASYFCKIGKEQRCSMCSRRASTFSSPLQSYACWSHSSGYDYVYNPFFVDVQQWGYVGNLATNHDRYCGIHAGAHVASSDAIMTRCLAIYDCFIERVDWDVTYPYISHEQKLNSCCRTVERNVVRSAVLSGKFEKIYDIGNPKGIAIISEPVEWHFYDAQPLSNKVKKLFYTDDVSKQFEDGLCLFWNCNVSKYPSNAVVCRFDTRVHSEFNLPGCNGGSLYVNKHAFHTPAYDINAFRDLKPLPFFYYSTTPCEVHGSGNMLEDIDYVPLKSAVCITACNLGGAVCRKHAAEYRDYMEAYNIVSAAGFRLWVYKTFDIYNLWSTFVKVQGLENIAFNVIKQGHFTGVDGELPVAVVNDKIFTKNGTDDVCIFKNETALPTNVAFELYAKRAVRSHPDLNLLRNLEVDVCYNFVLWDYDRNNIYGTTTIGVCKYTDIDVNPNLNMCFDIRDKGSLERFMSMPNGVLISDRKIKNYPCISGPKHAYFNGAILRNIDAKQPVIFYLYKKVNNEFVSFSDTFYTCGRTVGDFTVLTPMEEDFLVLDSDVFIKKYGLEDYAFEHVVYGDFSHTTLGGLHLLIGLYKKMREGHILMEEMLKDRATVHNYFITDSNTASYKAVCSVIDLRLDDFVTIIKEMDLDVVSKVVKVPIDLTMIEFMLWCRDGKVQTFYPRLQATNDWKPGLTMPSLFKVQQMNLEPCLLANYKQSIPMPNGVHMNVAKYMQLCQYLNTCTLAVPANMRVIHFGAGCEKGVAPGTSVLRQWLPLDAVLIDNDLNEFVSDADITIFGDCVTVHVGQQVDLLISDMYDPCTKAVGEVNQTKALFFVYLCNFIKNNLALGGSVAIKITEHSWSADLYKIMGRFAYWTVFCTNANASSSEGFLIGINFLGELKEEIDGNVMHANYIFWRNSTPMNLSTYSLFDLSRFPLKLKGTPVLQLKESQINELVISLLSQGKLLIRDNDTLNVSTDVLVNFRKRL", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp15-c-pf19215.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp15-m-pf19216.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19216", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp15-m-pf19216.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp15-n-pf19219.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19219", "section": 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"Pfam:PF11963", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/b-cov-a-nsp1-pf11963.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-exon-pf06471.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06471", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-exon-pf06471.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF01831", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11963", "PF13087", "PF13604", "PF16251", "PF16348", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633", "PF22104" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKIDCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPLHSLGGFPKGYVMGLFRSYKTKRYVVHHLSMTTSTTNFGEDFLGWIVPFGFMPSYVHKWFQFCRLYIEESDLIISNFKFDDYDFSVEDAYAEVHAEPKGKYSQKAYALLRQYRGIKPVLFVDQYGCDYSGKLADCLQAYGHYSLQDMRQKQSVWLANCDFDIVVAWHVVRDSRFVMRLQTIATICGIKYVAQPTEDVVDGAVVIREPVHLLSADAIVLKLPSLMKVMTHMDDFSIKSIYNVDLCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSSEVKAQSSGVIPENPVLFTNSTDTVNPDSFNLYGYSVTPFGSCIYWSPRPGLWIPIIKSSVKSYDDLVYSGVVGCKSIVKETALITHALYLDYVQCKCGNLEQNHILGVNNSWCRQLLLNRGDYNMLLKNIDLFVKRRADFACKFAVCGDGFVPFLLDGLIPRSYYLIQSGIFFTSLMSQFSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDASAPATGWLLYQLLNGLFVVSQANFNFVALIPDYAKILVNKFYTFFKLLLECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLIPGFVLPCNAQEQQIYFFEGVAESVIVEDDVIENVKSSLSSYEYCQPPKSVEKICIIDNMYMGKCGDKFFPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEEIVTGDNDDQIVVTGDDVDDIESVYDFDTYKALLVFNDVYNDALFVSYGSSVETETYFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIPKAIVLPQGGYVADFAYWFLNQFDINAYANWCCLKCGFSFDLNGLDAVFFYGDIVSHVCKCGHNMTLIAADLPCTLHFSLFDDNFCAFCTPKKIFIAACAVDVNVCHSVAVIGDEQIDGKFVTKFSGDKFDFIVGYGMSFSMSSFELAQLYGLCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTKALAVRLTANVGRVIKFETDAYKLFLSGDDCFVSNSSVIQEVLLLRHDIQLNNDVRDYLLSKMTSLPKDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLAKKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLSLADISAVQSSFGFDQQQLLAYYNFLTVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQHINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAICELELICDCGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIVHCTKLNVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTKPIIKAQFKPFAKVDGVYTNFKLVGHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFKGCETFGKPVIWLCHDEASLNSLTYFNKPSFKSENRYSVLSVDSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRDDNQTLLVPKIFKARAIEFYGFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNLFCLALKNAFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTICDFYSKLGVGFTSHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDADRANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKACVKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFILLWALLPTYSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSFYYHNSMDCPIVVAVMDEDIGSTMFNVPTKVLRHGFHVLHFLTYAFASDSVQCYTPHIQISYNDFYASGCVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVISEGIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFYQFFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVIANHVLWLFSYCRKIGVNVCNDSTFEETSLTTFMITKDSYCRLKNSVSDVAYNRYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVKMVSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLGDFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKADLVLDALASMTGVSIETLLAAIKRLYMGFQGRQILGSCTFEDELAPSDVYQQLAGVKLQSKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYINTHMIGVTLCVLCFVSFMMLLVKHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGLTYVWLSYFVPAVNFTYVYEVFYGCILCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLFITAFLGTYTWTTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFRMPMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDVKCANVVLLNCLQHLHVASNSRLWQYCSILHNEILSTSDLSVAFDKLAQLLIVLFANPAAVDTKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIKQLEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPALAANTLTIIIPDKQVFDKVVDNVYVAYAGSVWHIQTVQDADGINKQLTDISVDSNWPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNSGSDMNCNIPTQCYYNNGSSGRIVYAVLSDVDGLKYTKIIKDDGNCVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPLGIKDPILYVLTHDVCQVCGFWRDGSCSCVGSGVAVQSKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLSKYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYSVILSTCDGLKFTDESFYKNMYLKSAVMQSVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATNHKYVLSVSPYVCNAPNCDVSDVTKLYLGGMSYYCENHKPHYSFKLVMNGMVFGLYKQSCTGSPYIDDFNKIASCKWTEVDDYVLANECIERLKLFAAETQKATEEAFKQSYASATIQEIVSDREIILCWETGKVKPPLNKNYVFTGYHFTSTGKTVLGEYVFDKSELTNGVYYRATTTYKLSIGDVFVLTSHSVANLSAPTLVPQENYASIRFSSVYSVPLLFQTNVANYQHIGMKRYCTVQGPPGTGKSHLAIGLAVYYYTARVVYTAASHAAVDALCEKAYKFLNINDCTRIIPAKVRVDCYDKFKINDTTCKYVFTTINALPELVTDIVVVDEVSMLTNYELSVINARVKAKHYVYIGDPAQLPAPRVLLSKGSLEPRHFNSITKIMCCLGPDIFLGNCYRCPKEIVETVSALVYDNKLKAKNDNSSLCFKVYFKGQTTHESSSAVNIQQIYLISKFLKANPVWNSAVFISPYNSQNYVAKRILGVQTQTVDSAQGSEYDYVIYSQTAETAHSINVNRFNVAITRAKKGIFCVMSNMQLFESLNFITLPLDKIQNQTLSRLHCTTNLFKDCSKNFLGYHPAHAPSFLSVDDKYKVNEDLAVCLNICEPVLTYSRLISLMGFKLDLTLDGYSKFFITKDEAIKRVRGWVGFDVEGAHATRDNIGTNFPLQIGFSTGVDFVVEATGLFAERDCYIFKRTVAKAPPGDNFKHLIPLMSKGQKWDVVRIRIVQMLSDYLLDLSDSVVFITWSASFELTCLRYFAKLGRELNCDVCPNRATCYNSRTGYYGCWRHSYTCDYVYNPLIVDIQQWGYTGSLTSNHDIICNVHKGAHVASSDAIMTRCLAIYDCFCKSVNWNLEYPIISNEVSINTSCRLLQRVMLKAAMLCNRYNLCYDIGNPKGIACVKDYEFKFYDASPVVKSVKQLFYVYDVHKDNFKDGLCMFWNCNVDKYPSNSIVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTNPFTRTVFENLKPMPFFYYSDTPCVYVDGLESKQVDYVPLRSATCITRCNLGGAVCSKHAEDYCKYLESYNVATTAGFTFWVYKTFDFYNLWNTFTMLQSLENVIYNLVNAGHYDGRIGELPCAIMNDKVVVKINNVDTVIFKNNTSLPTNIAVELFTKRSIRHHPELKILRNLNIDICWKHVLWDYVKDSLFCSSTYGVCKYTDLNFIENLNVLFDGRDNGALEAFRKARNGVFISTGKLSSLSMIKGPQRADLNGVIVDKVGELNVEFWFAMRKDGDDVIFSRADSLSPSHYWSPQGNLGGNCAGNASGNDALARFTIFTQSRVLSTFEPRSDLERDFIDMEDSLFIAKYGLEDYAFDHIVYGSFNYKVIGGLHLLIGLFRRLKKSNLVIQEFLQYDSSIHSYFITDQECGSSKSVCTVIDLLLDDFVVIVKSLNLNCVSKVVNINVDFKDFQFMLWCNDNKIMTFYPKMQATSDWKPGYSMPVLYKYLNVPLERVSLWNYGKAINLPTGCMMNVAKYTQLCQYLNTTTLAVPVNMRVLHLGAGSDKEVAPGSAVLRQWLPSGSILVDNDLNPFVSDSLVTYFGDCMTLPFDCHWDLIISDMYDPLTKNIGDYNVSKDGFFTYICYLIRDKLSLGGSVAIKITEFSWNADLYKLMSYFAFWTVFCTNVNASSSEGFLIGINYLGKSCFEIDGNVMHANYLFWRNSTTWNGGAYSLFDMSKFSLKLAGTAVVNLRPDQLNDLVYSLIERGKLLVRDTRKEIFVGDSLVNTC", "sequence_length": 7152, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4d344268725f1a959f47ad9d2e211b46167e51ff43c2c9aaca990ae456bda1af", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6X3.json", "taxon_id": "443240", "uniprot_accession": "P0C6X3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Avian infectious bronchitis virus (strain Beaudette)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-methyltr-2-pf06460.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06460", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-methyltr-2-pf06460.yaml" }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp13-stalk-pf20633.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp13-zbd-pf20632.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20632", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp13-zbd-pf20632.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp15-m-pf19216.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19216", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp15-m-pf19216.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-nsp15-n-pf19219.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19219", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-nsp15-n-pf19219.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cov-rpol-n-pf06478.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06478", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cov-rpol-n-pf06478.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cov-exon-pf06471.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06471", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cov-exon-pf06471.yaml" } ], "pfam_ids": [ "PF00680", "PF01443", "PF01661", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF16348", "PF17896", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASSLKQGVSPKPRDVILVSKDIPEQLCDALFFYTSHNPKDYADAFAVRQKFDRSLQTGKQFKFETVCGLFLLKGVDKITPGVPAKVLKATSKLADLEDIFGVSPLARKYRELLKTACQWSLTVEALDVRAQTLDEIFDPTEILWLQVAAKIHVSSMAMRRLVGEVTAKVMDALGSNLSALFQIVKQQIARIFQKALAIFENVNELPQRIAALKMAFAKCARSITVVVVERTLVVKEFAGTCLASINGAVAKFFEELPNGFMGSKIFTTLAFFKEAAVRVVENIPNAPRGTKGFEVVGNAKGTQVVVRGMRNDLTLLDQKADIPVEPEGWSAILDGHLCYVFRSGDRFYAAPLSGNFALSDVHCCERVVCLSDGVTPEINDGLILAAIYSSFSVSELVTALKKGEPFKFLGHKFVYAKDAAVSFTLAKAATIADVLRLFQSARVIAEDVWSSFTEKSFEFWKLAYGKVRNLEEFVKTYVCKAQMSIVILAAVLGEDIWHLVSQVIYKLGVLFTKVVDFCDKHWKGFCVQLKRAKLIVTETFCVLKGVAQHCFQLLLDAIHSLYKSFKKCALGRIHGDLLFWKGGVHKIVQDGDEIWFDAIDSVDVEDLGVVQEKSIDFEVCDDVTLPENQPGHMVQIEDDGKNYMFFRFKKDENIYYTPMSQLGAINVVCKAGGKTVTFGETTVQEIPPPDVVPIKVSIECCGEPWNTIFKKAYKEPIEVDTDLTVEQLLSVIYEKMCDDLKLFPEAPEPPPFENVALVDKNGKDLDCIKSCHLIYRDYESDDDIEEEDAEECDTDSGEAEECDTNSECEEEDEDTKVLALIQDPASIKYPLPLDEDYSVYNGCIVHKDALDVVNLPSGEETFVVNNCFEGAVKPLPQKVVDVLGDWGEAVDAQEQLCQQEPLQHTFEEPVENSTGSSKTMTEQVVVEDQELPVVEQDQDVVVYTPTDLEVAKETAEEVDEFILIFAVPKEEVVSQKDGAQIKQEPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQRLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEGCTIRVLLFSLSQEHIDYFDVTCKQKTIYLTEDGVKYRSIVLKPGDSLGQFGQVYAKNKIVFTADDVEDKEILYVPTTDKSILEYYGLDAQKYVIYLQTLAQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAKIRFKGFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLKKRVSCNCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLLLFATDGPATVDCDEDAVGTVVFVGSTNSGHCYTQAAGQAFDNLAKDRKFGKKSPYITAMYTRFAFKNETSLPVAKQSKGKSKSVKEDVSNLATSSKASFDNLTDFEQWYDSNIYESLKVQESPDNFDKYVSFTTKEDSKLPLTLKVRGIKSVVDFRSKDGFIYKLTPDTDENSKAPVYYPVLDAISLKAIWVEGNANFVVGHPNYYSKSLHIPTFWENAENFVKMGDKIGGVTMGLWRAEHLNKPNLERIFNIAKKAIVGSSVVTTQCGKLIGKAATFIADKVGGGVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSVVASYKTVLCKVVLATLLIVWFVYTSNPVMFTGIRVLDFLFEGSLCGPYKDYGKDSFDVLRYCADDFICRVCLHDKDSLHLYKHAYSVEQVYKDAASGFIFNWNWLYLVFLILFVKPVAGFVIICYCVKYLVLNSTVLQTGVCFLDWFVQTVFSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPILILDQALYEQLVVEPVSKSVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMAIFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAPPVVWKFSELIKLSDSCLKYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEKKAGGIVSGTFKCFKSYFKWLLIFYILFTACCSGYYYMEVSKSFVHPMYDVNSTLHVEGFKVIDKGVLREIVPEDTCFSNKFVNFDAFWGRPYDNSRNCPIVTAVIDGDGTVATGVPGFVSWVMDGVMFIHMTQTERKPWYIPTWFNREIVGYTQDSIITEGSFYTSIALFSARCLYLTASNTPQLYCFNGDNDAPGALPFGSIIPHRVYFQPNGVRLIVPQQILHTPYVVKFVSDSYCRGSVCEYTRPGYCVSLNPQWVLFNDEYTSKPGVFCGSTVRELMFSMVSTFFTGVNPNIYMQLATMFLILVVVVLIFAMVIKFQGVFKAYATTVFITMLVWVINAFILCVHSYNSVLAVILLVLYCYASLVTSRNTVIIMHCWLVFTFGLIVPTWLACCYLGFIIYMYTPLFLWCYGTTKNTRKLYDGNEFVGNYDLAAKSTFVIRGSEFVKLTNEIGDKFEAYLSAYARLKYYSGTGSEQDYLQACRAWLAYALDQYRNSGVEIVYTPPRYSIGVSRLQSGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDTIYCPRHVLGKFSGDQWNDVLNLANNHEFEVTTQHGVTLNVVSRRLKGAVLILQTAVANAETPKYKFIKANCGDSFTIACAYGGTVVGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISVKESSFSLPKWLESTTVSVDDYNKWAGDNGFTPFSTSTAITKLSAITGVDVCKLLRTIMVKNSQWGGDPILGQYNFEDELTPESVFNQIGGVRLQSSFVRKATSWFWSRCVLACFLFVLCAIVLFTAVPLKFYVYAAVILLMAVLFISFTVKHVMAYMDTFLLPTLITVIIGVCAEVPFIYNTLISQVVIFLSQWYDPVVFDTMVPWMFLPLVLYTAFKCVQGCYMNSFNTSLLMLYQFVKLGFVIYTSSNTLTAYTEGNWELFFELVHTTVLANVSSNSLIGLFVFKCAKWMLYYCNATYLNNYVLMAVMVNCIGWLCTCYFGLYWWVNKVFGLTLGKYNFKVSVDQYRYMCLHKINPPKTVWEVFSTNILIQGIGGDRVLPIATVQAKLSDVKCTTVVLMQLLTKLNVEANSKMHVYLVELHNKILASDDVGECMDNLLGMLITLFCIDSTIDLSEYCDDILKRSTVLQSVTQEFSHIPSYAEYERAKNLYEKVLVDSKNGGVTQQELAAYRKAANIAKSVFDRDLAVQKKLDSMAERAMTTMYKEARVTDRRAKLVSSLHALLFSMLKKIDSEKLNVLFDQASSGVVPLATVPIVCSNKLTLVIPDPETWVKCVEGVHVTYSTVVWNIDTVIDADGTELHPTSTGSGLTYCISGANIAWPLKVNLTRNGHNKVDVVLQNNELMPHGVKTKACVAGVDQAHCSVESKCYYTNISGNSVVAAITSSNPNLKVASFLNEAGNQIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQSKGHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSPTPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTTEKDPVGFCLRNKVCTVCQCWIGYGCQCDSLRQPKSSVQSVAGASDFDKNYLNRVRGSSEARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDTEDGNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKSEVTADHDFFVFNKNIYNISRQRLTKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYYVMLAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFDTYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQEYHPNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPGHFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCLEVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYEMSLEEQDQLFEITKKNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTKFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIYRLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDIVYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYPDPSRILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLYQELSQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQSCGVCVVCNSQTILRCGNCIRKPFLCCKCCYDHVMHTDHKNVLSINPYICSQLGCGEADVTKLYLGGMSYFCGNHKPKLSIPLVSNGTVFGIYRANCAGSENVDDFNQLATTNWSIVEPYILANRCSDSLRRFAAETVKATEELHKQQFASAEVREVFSDRELILSWEPGKTRPPLNRNYVFTGYHFTRTSKVQLGDFTFEKGEGKDVVYYKATSTAKLSVGDIFVLTSHNVVSLVAPTLCPQQTFSRFVNLRPNVMVPECFVNNIPLYHLVGKQKRTTVQGPPGSGKSHFAIGLAVYFSSARVVFTACSHAAVDALCEKAFKFLKVDDCTRIVPQRTTVDCFSKFKANDTGKKYIFSTINALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLNGSLSPKDYNVVTNLMVCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIANNPESRECFKVIVNNGNSDVGHESGSAYNTTQLEFVKDFVCRNKQWREAIFISPYNAMNQRAYRMLGLNVQTVDSSQGSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFTELDSETSLQGTGLFKICNKEFSGVHPAYAVTTKALAATYKVNDELAALVNVEAGSEITYKHLISLLGFKMSVNVEGCHNMFITRDEAIRNVRGWVGFDVEATHACGTNIGTNLPFQVGFSTGADFVVTPEGLVDTSIGNNFEPVNSKAPPGEQFNHLRVLFKSAKPWHVIRPRIVQMLADNLCNVSDCVVFVTWCHGLELTTLRYFVKIGKEQVCSCGSRATTFNSHTQAYACWKHCLGFDFVYNPLLVDIQQWGYSGNLQFNHDLHCNVHGHAHVASVDAIMTRCLAINNAFCQDVNWDLTYPHIANEDEVNSSCRYLQRMYLNACVDALKVNVVYDIGNPKGIKCVRRGDVNFRFYDKNPIVRNVKQFEYDYNQHKDKFADGLCMFWNCNVDCYPDNSLVCRYDTRNLSVFNLPGCNGGSLYVNKHAFYTPKFDRISFRNLKAMPFFFYDSSPCETIQVDGVAQDLVSLATKDCITKCNIGGAVCKKHAQMYAEFVTSYNAAVTAGFTFWVTNKLNPYNLWKSFSALQSIDNIAYNMYKGGHYDAIAGEMPTVITGDKVFVIDQGVEKAVFVNQTTLPTSVAFELYAKRNIRTLPNNRILKGLGVDVTNGFVIWDYANQTPLYRNTVKVCAYTDIEPNGLVVLYDDRYGDYQSFLAADNAVLVSTQCYKRYSYVEIPSNLLVQNGMPLKDGANLYVYKRVNGAFVTLPNTINTQGRSYETFEPRSDIERDFLAMSEESFVERYGKDLGLQHILYGEVDKPQLGGLHTVIGMYRLLRANKLNAKSVTNSDSDVMQNYFVLSDNGSYKQVCTVVDLLLDDFLELLRNILKEYGTNKSKVVTVSIDYHSINFMTWFEDGSIKTCYPQLQSAWTCGYNMPELYKVQNCVMEPCNIPNYGVGITLPSGILMNVAKYTQLCQYLSKTTICVPHNMRVMHFGAGSDKGVAPGSTVLKQWLPEGTLLVDNDIVDYVSDAHVSVLSDCNKYNTEHKFDLVISDMYTDNDSKRKHEGVIANNGNDDVFIYLSSFLRNNLALGGSFAVKVTETSWHEVLYDIAQDCAWWTMFCTAVNASSSEAFLIGVNYLGASEKVKVSGKTLHANYIFWRNCNYLQTSAYSIFDVAKFDLRLKATPVVNLKTEQKTDLVFNLIKCGKLLVRDVGNTSFTSDSFVCTM", "sequence_length": 6629, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79310310f39f1ff42168bd49fcf3a3ce55ccf3d7fa450bf0e11de6e36ef13016", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6Y1.json", "taxon_id": "11122", "uniprot_accession": "P0C6Y1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porcine transmissible gastroenteritis coronavirus (strain Purdue)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cnv-replicase-n-pf16688.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16688", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cnv-replicase-n-pf16688.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF13087", "PF13604", "PF16348", "PF16688", "PF19211", "PF19212", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSKQFKILVNEDYQVNVPSLPIRDVLQEIKYCYRNGFEGYVFVPEYCRDLVDCDRKDHYVIGVLGNGVSDLKPVLLTEPSVMLQGFIVRANCNGVLEDFDLKIARTGRGAIYVDQYMCGADGKPVIEGDFKDYFGDEDIIEFEGEEYHCAWTTVRDEKPLNQQTLFTIQEIQYNLDIPHKLPNCATRHVAPPVKKNSKIVLSEDYKKLYDIFGSPFMGNGDCLSKCFDTLHFIAATLRCPCGSESSGVGDWTGFKTACCGLSGKVKGVTLGDIKPGDAVVTSMSAGKGVKFFANCVLQYAGDVEGVSIWKVIKTFTVDETVCTPGFEGELNDFIKPESKSLVACSVKRAFITGDIDDAVHDCIITGKLDLSTNLFGNVGLLFKKTPWFVQKCGALFVDAWKVVEELCGSLTLTYKQIYEVVASLCTSAFTIVNYKPTFVVPDNRVKDLVDKCVKVLVKAFDVFTQIITIAGIEAKCFVLGAKYLLFNNALVKLVSVKILGKKQKGLECAFFATSLVGATVNVTPKRTETATISLNKVDDVVAPGEGYIVIVGDMAFYKSGEYYFMMSSPNFVLTNNVFKAVKVPSYDIVYDVDNDTKSKMIAKLGSSFEYDGDIDAAIVKVNELLIEFRQQSLCFRAFKDDKSIFVEAYFKKYKMPACLAKHIGLWNIIKKDSCKRGFLNLFNHLNELEDIKETNIQAIKNILCPDPLLDLDYGAIWYNCMPGCSDPSVLGSVQLLIGNGVKVVCDGCKGFANQLSKGYNKLCNAARNDIEIGGIPFSTFKTPTNTFIEMTDAIYSVIEQGKALSFRDADVPVVDNGTISTADWSEPILLEPAEYVKPKNNGNVIVIAGYTFYKDEDEHFYPYGFGKIVQRMYNKMGGGDKTVSFSEEVDVQEIAPVTRVKLEFEFDNEIVTGVLERAIGTRYKFTGTTWEEFEESISEELDAIFDTLANQGVELEGYFIYDTCGGFDIKNPDGIMISQYDINITADEKSEVSASSEEEEVESVEEDPENEIVEASEGAEGTSSQEEVETVEVADITSTEEDVDIVEVSAKDDPWAAAVDVQEAEQFNPSLPPFKTTNLNGKIILKQGDNNCWINACCYQLQAFDFFNNEAWEKFKKGDVMDFVNLCYAATTLARGHSGDAEYLLELMLNDYSTAKIVLAAKCGCGEKEIVLERAVFKLTPLKESFNYGVCGDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVKPVMHAVYTGTTQNGHYMVDDIEHGYCVDGMGIKPLKKRCYTSTLFINANVMTRAEKPKQEFKVEKVEQQPIVEENKSSIEKEEIQSPKNDDLILPFYKAGKLSFYQGALDVLINFLEPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFFENVIEHLSVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIFNVRLETSLQCLLKTVNDRGLNVFVYTDQERQTIENFFSCSIPVNVTEDNVNHERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVIKAIDIDWQAHYGFRDAAAFSASSHDAYKFEVVTHSNFIVHKQTDNNCWINAICLALQRLKPQWKFPGVRGLWNEFLERKTQGFVHMLYHISGVKKGEPGDAELMLHKLGDLMDNDCEIIVTHTTACDKCAKVEKFVGPVVAAPLAIHGTDETCVHGVSVNVKVTQIKGTVAITSLIGPIIGEVLEATGYICYSGSNRNGHYTYYDNRNGLVVDAEKAYHFNRDLLQVTTAIASNFVVKKPQAEERPKNCAFNKVAASPKIVQEQKLLAIESGANYALTEFGRYADMFFMAGDKILRLLLEVFKYLLVLFMCLRSTKMPKVKVKPPLAFKDFGAKVRTLNYMRQLNKPSVWRYAKLVLLLIAIYNFFYLFVSIPVVHKLTCNGAVQAYKNSSFIKSAVCGNSILCKACLASYDELADFQHLQVTWDFKSDPLWNRLVQLSYFAFLAVFGNNYVRCFLMYFVSQYLNLWLSYFGYVEYSWFLHVVNFESISAEFVIVVIVVKAVLALKHIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYRFYVGDEFTSYDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANVRNACVYFSQLIGKPIKIVNSDLLEDLSVDFKGALFNAKKNVIKNSFNVDVSECKNLDECYRACNLNVSFSTFEMAVNNAHRFGILITDRSFNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFNAVGSDDDLPYERFTESVSPKSGSGFFDVITQLKQIVILVFVFIFICGLCSVYSVATQSYIESAEGYDYMVIKNGIVQPFDDTISCVHNTYKGFGDWFKAKYGFIPTFGKSCPIVVGTVFDLENMRPIPDVPAYVSIVGRSLVFAINAAFGVTNMCYDHTGNAVSKDSYFDTCVFNTACTTLTGLGGTIVYCAKQGLVEGAKLYSDLMPDYYYEHASGNMVKLPAIIRGLGLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVYDNEFGNGYICGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDCTFLIVMIIVTLVVNNVSYFVTQNTFFMIIYAIVYYFITRKLAYPGILDAGFIIAYINMAPWYVITAYILVFLYDSLPSLFKLKVSTNLFEGDKFVGNFESAAMGTFVIDMRSYETIVNSTSIARIKSYANSFNKYKYYTGSMGEADYRMACYAHLGKALMDYSVNRTDMLYTPPTVSVNSTLQSGLRKMAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVIASDTTRVINYENEMSSVRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFTELSSTDAFSMLAAKTGQSVEKLLDSIVRLNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQAGKVKSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTTLISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNMVKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVIASYRIAYYIVVCVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQSKLTEMKCTNVVLLGLLSKMHVESNSKEWNYCVGLHNEINLCDDPEIVLEKLLALIAFFLSKHNTCDLSELIESYFENTTILQSVASAYAALPSWIALEKARADLEEAKKNDVSPQILKQLTKAFNIAKSDFEREASVQKKLDKMAEQAAASMYKEARAVDRKSKIVSAMHSLLFGMLKKLDMSSVNTIIDQARNGVLPLSIIPAASATRLVVITPSLEVFSKIRQENNVHYAGAIWTIVEVKDANGSHVHLKEVTAANELNLTWPLSITCERTTKLQNNEIMPGKLKERAVRASATLDGEAFGSGKALMASESGKSFMYAFIASDNNLKYVKWESNNDIIPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRLQAGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGVEANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTGTQDPIRFCIENEVCVVCGCWLNNGCMCDRTSMQSFTVDQSYLNRVRGSSAARLEPCNGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKHDAYYIVKRCTKTVMDHEQVCYNDLKDSGAVAEHDFFTYKEGRCEFGNVARRNLTKYTMMDLCYAIRNFDEKNCEVLKEILVTVGACTEEFFENKDWFDPVENEAIHEVYAKLGPIVANAMLKCVAFCDAIVEKGYIGVITLDNQDLNGNFYDFGDFVKTAPGFGCACVTSYYSYMMPLMGMTSCLESENFVKSDIYGSDYKQYDLLAYDFTEHKEYLFQKYFKYWDRTYHPNCSDCTSDECIIHCANFNTLFSMTIPMTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLDTMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGITYQTVKPGHFNKDFYDFITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFECYDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQMNLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNMLKNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHNDRFYRLSNELAQVLTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKSIQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAFKATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGVFVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDSFSVTMLEEGQDKFWSEEFYASLYEKSTVLQAAGMCVVCGSQTVLRCGDCLRRPLLCTKCAYDHVMGTKHKFIMSITPYVCSFNGCNVNDVTKLFLGGLSYYCMNHKPQLSFPLCANGNVFGLYKSSAVGSEAVEDFNKLAVSDWTNVEDYKLANNVKESLKIFAAETVKAKEESVKSEYAYAVLKEVIGPKEIVLQWEASKTKPPLNRNSVFTCFQISKDTKIQLGEFVFEQSEYGSDSVYYKSTSTYKLTPGMIFVLTSHNVSPLKAPILVNQEKYNTISKLYPVFNIAEAYNTLVPYYQMIGKQKFTTIQGPPGSGKSHCVIGLGLYYPQARIVYTACSHAAVDALCEKAAKNFNVDRCSRIIPQRIRVDCYTGFKPNNTNAQYLFCTVNALPEASCDIVVVDEVSMCTNYDLSVINSRLSYKHIVYVGDPQQLPAPRTLINKGVLQPQDYNVVTKRMCTLGPDVFLHKCYRCPAEIVKTVSALVYENKFVPVNPESKQCFKMFVKGQVQIESNSSINNKQLEVVKAFLAHNPKWRKAVFISPYNSQNYVARRLLGLQTQTVDSAQGSEYDYVIYTQTSDTQHATNVNRFNVAITRAKVGILCIMCDRTMYENLDFYELKDSKIGLQAKPETCGLFKDCSKSEQYIPPAYATTYMSLSDNFKTSDGLAVNIGTKDVKYANVISYMGFRFEANIPGYHTLFCTRDFAMRNVRAWLGFDVEGAHVCGDNVGTNVPLQLGFSNGVDFVVQTEGCVITEKGNSIEVVKARAPPGEQFAHLIPLMRKGQPWHIVRRRIVQMVCDYFDGLSDILIFVLWAGGLELTTMRYFVKIGRPQKCECGKSATCYSSSQSVYACFKHALGCDYLYNPYCIDIQQWGYTGSLSMNHHEVCNIHRNEHVASGDAIMTRCLAIHDCFVKRVDWSIVYPFIDNEEKINKAGRIVQSHVMKAALKIFNPAAIHDVGNPKGIRCATTPIPWFCYDRDPINNNVRCLDYDYMVHGQMNGLMLFWNCNVDMYPEFSIVCRFDTRTRSKLSLEGCNGGALYVNNHAFHTPAYDRRAFAKLKPMPFFYYDDSNCELVDGQPNYVPLKSNVCITKCNIGGAVCKKHAALYRAYVEDYNIFMQAGFTIWCPQNFDTYMLWHGFVNSKALQSLENVAFNVVKKGAFTGLKGDLPTAVIADKIMVRDGPTDKCIFTNKTSLPTNVAFELYAKRKLGLTPPLTILRNLGVVATYKFVLWDYEAERPFSNFTKQVCSYTDLDSEVVTCFDNSIAGSFERFTTTRDAVLISNNAVKGLSAIKLQYGLLNDLPVSTVGNKPVTWYIYVRKNGEYVEQIDSYYTQGRTFETFKPRSTMEEDFLSMDTTLFIQKYGLEDYGFEHVVFGDVSKTTIGGMHLLISQVRLAKMGLFSVQEFMNNSDSTLKSCCITYADDPSSKNVCTYMDILLDDFVTIIKSLDLNVVSKVVDVIVDCKAWRWMLWCENSHIKTFYPQLQSAEWNPGYSMPTLYKIQRMCLERCNLYNYGAQVKLPDGITTNVVKYTQLCQYLNTTTLCVPHKMRVLHLGAAGASGVAPGSTVLRRWLPDDAILVDNDLRDYVSDADFSVTGDCTSLYIEDKFDLLVSDLYDGSTKSIDGENTSKDGFFTYINGFIKEKLSLGGSVAIKITEFSWNKDLYELIQRFEYWTVFCTSVNTSSSEGFLIGINYLGPYCDKAIVDGNIMHANYIFWRNSTIMALSHNSVLDTPKFKCRCNNALIVNLKEKELNEMVIGLLRKGKLLIRNNGKLLNFGNHFVNTP", "sequence_length": 6684, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "868438fe13fa1740e6fc11562c0bd4f580027d8496300bcfa06db0bcf06d04a3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0C6Y5.json", "taxon_id": "11151", "uniprot_accession": "P0C6Y5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Severe acute respiratory syndrome coronavirus 2", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12379", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml" } ], "pfam_ids": [ "PF01661", "PF05409", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF16251", "PF16348", "PF19211", "PF19213", "PF19217", "PF19218" ], "protein_name": "Replicase polyprotein 1a", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV", "sequence_length": 4405, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bb8d4ddedb5cd0daf2e688e644633a2c5376e718cb62935cb3380dcf38173bf8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DTC1.json", "taxon_id": "2697049", "uniprot_accession": "P0DTC1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Severe acute respiratory syndrome coronavirus 2", "origins": [ { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/3-6-diaminoacridine.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:8452", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/3-6-diaminoacridine.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/anacardic-acid.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:2696", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/anacardic-acid.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/baicalein.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:2979", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/baicalein.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/ebselen.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:77543", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/ebselen.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antibacterial/hexachlorophene.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:5693", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antibacterial/hexachlorophene.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antifungal/disulfiram.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:4659", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antifungal/disulfiram.yaml" }, { "cited_uniprot_accession": "P0DTD1", "commit": "18165f54cc13f9321330e34bdab71fd5bc03b05b", "link_basis": [ "uniprot_pfam_xref" ], "mech": "AntibioticMech", "path": "data/antibiotics/antiviral/n-4-1h-benzotriazol-1-yl-acetyl-thiophen-3-yl-methyl-amino-phenyl-prop.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:149680", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/AntibioticMech/blob/18165f54cc13f9321330e34bdab71fd5bc03b05b/data/antibiotics/antiviral/n-4-1h-benzotriazol-1-yl-acetyl-thiophen-3-yl-methyl-amino-phenyl-prop.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12379", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/bcov-nsp3-n-pf12379.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF11501", "PF11633", "PF12124", "PF12379", "PF13087", "PF16251", "PF16348", "PF19211", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQAVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATLQAENVTGLFKDCSKVITGLHPTQAPTHLSVDTKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATREAVGTNLPLQLGFSTGVNLVAVPTGYVDTPNNTDFSRVSAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGFELTSMKYFVKIGPERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMIDVQQWGFTGNLQSNHDLYCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWTIEYPIIGDELKINAACRKVQHMVVKAALLADKFPVLHDIGNPKAIKCVPQADVEWKFYDAQPCSDKAYKIEELFYSYATHSDKFTDGVCLFWNCNVDRYPANSIVCRFDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFVNLKQLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRHHANEYRLYLDAYNMMISAGFSLWVYKQFDTYNLWNTFTRLQSLENVAFNVVNKGHFDGQQGEVPVSIINNTVYTKVDGVDVELFENKTTLPVNVAFELWAKRNIKPVPEVKILNNLGVDIAANTVIWDYKRDAPAHISTIGVCSMTDIAKKPTETICAPLTVFFDGRVDGQVDLFRNARNGVLITEGSVKGLQPSVGPKQASLNGVTLIGEAVKTQFNYYKKVDGVVQQLPETYFTQSRNLQEFKPRSQMEIDFLELAMDEFIERYKLEGYAFEHIVYGDFSHSQLGGLHLLIGLAKRFKESPFELEDFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIKSQDLSVVSKVVKVTIDYTEISFMLWCKDGHVETFYPKLQSSQAWQPGVAMPNLYKMQRMLLEKCDLQNYGDSATLPKGIMMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTANKWDLIISDMYDPKTKNVTKENDSKEGFFTYICGFIQQKLALGGSVAIKITEHSWNADLYKLMGHFAWWTAFVTNVNASSSEAFLIGCNYLGKPREQIDGYVMHANYIFWRNTNPIQLSSYSLFDMSKFPLKLRGTAVMSLKEGQINDMILSLLSKGRLIIRENNRVVISSDVLVNN", "sequence_length": 7096, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "edbd5d8a5deb16bfd31ff3029c7897b816b752cb26cd0dcf23d089dcdd841586", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DTD1.json", "taxon_id": "2697049", "uniprot_accession": "P0DTD1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Feline coronavirus (strain FIPV WSU-79/1146)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cnv-replicase-n-pf16688.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF16688", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cnv-replicase-n-pf16688.yaml" } ], "pfam_ids": [ "PF00680", "PF01661", "PF05409", "PF06460", "PF06471", "PF06478", "PF08710", "PF08715", "PF08716", "PF08717", "PF09401", "PF13087", "PF13604", "PF16348", "PF16688", "PF19211", "PF19212", "PF19213", "PF19215", "PF19216", "PF19217", "PF19218", "PF19219", "PF20631", "PF20632", "PF20633" ], "protein_name": "Replicase polyprotein 1ab", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSKQFKILVNEDYQVNVPSLPFRDALQEIKYCYRNGFDGYVFVPEYRRDLVDCNRKDHYVIGVLGNGISDLKPVLLTEPSVMLQGFIVRANCNGVLEDFDLKFARTGNGAIYVDQYMCGADGKPVIEGEFKDYFGDEDVIIYEGEEYHCAWLTVRDEKPLWQQTLLTIREIQYNLDIPHKLPNCAIREVAPPVKKNSKVVLSEEYRKLYDIFGSPFMGNGDSLNTCFDSLHFIAATLKCPCGAESSGVGDWTGFKTACCGLHGKVKGVTLGAVKPGDAIVTSMSAGKGVKFFANSVLQYAGDVENVSVWKVIKTFTVNETVCTTDFEGELNDFIRPESTSPVSCSIKRAFITGEVDDAVHDCIIAGKLDLSTNLFGSANLLFKKMPWFVQKCGAIFADAWKVVEELLCSLKLTYKQIYDVVASLCTSAFTIMDYKPVFVVSSNSVKDLVDKCVKILVKAFDVFTQTITIAGVEAKCFVLGSKYLLFNNALVKLVSVKILGKRQKGLDSAFFATNLIGATVNVTPQRTESAYISLNKVDDVVTPGGGHIVIIGDMAFYKSEEYYFMMASPDSVLVNNVFKAARVPSYNIVYDVNDDTKSKMVVKIGTSFDFDGDLDAAIAKVNDLLIEFRQEKLCFRALKDGENILVEAYLKKYKMPVCLKNHVGLWDIIRQDSGKKGFLDTFNHLNELEDVKDIKIQTIKNIICPDLLLELDFGAIWYRCMPACSDKSILGNVKIMLGNGVKVVCDGCHSFANRLTINYNKLCDTARKDIEIGGIPFSTFKTPSSSFIDMKDAIYSVVEYGEALSFKTASVPVTNSGIITTDDWSDPILLEPADYVEPKDNGDVIVIAGYTFYKDEDDHFYPYGSGMVVQKMYNKMGGGDKSVSFSDNVNVREIEPVTRVRLEFEFDNEVVTQVLEKVIGTKYKFIGTTWEEFEDSISEKLDKIFDTLAEQGVELEGYFIYDTCGGFDINNPDGVMISQYDLNTAADDKSDSDASVEDISLISDNEDVEQIEEDNTSTDDAEDVSSVEGETVSVVDVEDFVEQVSLVEENNVLTPAVNPDEQLSSVEKKDEVSAKNDPWAAAVDEQEAEQPKPSLTPFKTTNLNGKIILKQQDNNCWINACCYQLQAFDFFNHDLWDGFKKDDVMPFVDFCYAALTLKQGDSGDAEYLLETMLNDYSTAKVTLSAKCGCGVKEIVLERTVFKLTPLRNEFKYGVCGDCKQINMCKFASVEGSGVFVHDRIEKQTPVSQFIVTPTMHAVYTGTTQSGHYMIEDCIHDYCVDGMGIKPRKHKFYTSTLFLNANVMTAKSKTMVEPPVPVEDKCVEDCQSPKDLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNGTIPIKVTEDTVNQKRVSVALDKTYGEQLKGTVVIKDKDVTNQLPSVSDVGEKVVKALDVDWNAYYGFPNAAAFSASSHDAYEFDVVTHNNFIVHKQTDNNCWVNAICLALQRLKPTWKFPGVKSLWDAFLTRKTAGFVHMLYHISGLTKGQPGDAELTLHKLVDLMSSDSAVTVTHTTACDKCAKVETFTGPVVAAPLLVCGTDEICVHGVHVNVKVTSIRGTVAITSLIGPVVGDVIDATGYICYTGLNSRGHYTYYDNRNGLMVDADKAYHFEKNLLQVTTAIASNFVANTPKKEIMPKTQAKESKAKESNTARVFSEVEENPKNIVRKEKLLAIESGVDYTITTLGKYADVFFMAGDKILRFLLEVFKYLLVVFMCLRKSKMPKVKVKPPHVFRNLGAKVRTLNYVRQLNKPALWRYIKLVLLLIALYHFFYLFVSIPVVHKLACSGSVQAYSNSSFVKSEVCGNSILCKACLASYDELADFDHLQVSWDYKSDPLWNRVIQLSYFIFLAVFGNNYVRCLLMYFVSQYLNLWLSYFGYVKYSWFLHVVNFESISVEFVIIVVVFKAVLALKHIFLPCNNPSCKTCSKIARQTRIPIQVVVNGSMKTVYVHANGTGKLCKKHNFYCKNCDSYGFDHTFICDEIVRDLSNSIKQTVYATDRSYQEVTKVECTDGFYRFYVGEEFTAYDYDVKHKKYSSQEVLKTMFLLDDFIVYNPSGSSLASVRNVCVYFSQLIGRPIKIVNSELLEDLSVDFKGALFNAKKNVIKNSFNVDVSECKNLEECYKLCNLDVTFSTFEMAINNAHRFGILITDRSFNNFWPSKIKPGSSGVSAMDIGKCMTFDAKIVNAKVLTQRGKSVVWLSQDFSTLSSTAQKVLVKTFVEEGVNFSLTFNAVGSDEDLPYERFTESVSAKSGSGFFDVLKQLKQLFWCLVLFITLYGLCSVYSVATQSYIDSAEGYDYMVIKNGVVQSFDDSINCVHNTYKGFAVWFKAKHGFVPTFDKSCPIVLGTVFDLGNMRPIPDVPAYVALVGRSLVFAINAAFGVTNVCYDHTGAAVSKNSYFDTCVFNSACTTLTGIGGTVVYCAKQGLVEGAKLYSELLPDYYYEHASGNMVKIPAIIRSFGLRFVKTQATTYCRVGECTESQAGFCFGGDNWFVYDKEFGDGYICGSSTLGFFKNVFALFNSNMSVVATSGAMLANIVIACLAIAVCYGVLKFKKIFGDCTLLVVMIIVTLVVNNVSYFVTQNTFFMIVYAIIYYFTTRKLAYPGVLDAGFIIAYLNMAPWYVLVLYIMVFLYDSLPSLFKLKVTTNLFEGDKFVGSFESAAMGTFVIDMRSYETLVNSTSLDRIKSYANSFNKYKYYTGSMGEADYRMACYAHLGKALMDYSVSRNDMLYTPPTVSVNSTLQSGLRKMAQPSGVVEPCIVRVAYGNNVLNGLWLGDEVICPRHVIASDTSRVINYENELSSVRLHNFSIAKNNAFLGVVSAKYKGVNLVLKVNQVNPNTPEHKFKSVRPGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMTLESYNAWAKTNSFTEIVSTDAFNMLAAKTGYSVEKLLECIVRLNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQSGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITTLVSVLLVAGIKHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENVNTTFLPVDMQGVMLALFCVVVFVICTIRFFTCKQSWFSLFATTIFVMFNIVKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAYYIVVYVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQSKLTEMKCTNVVLLGLLSKMHVESNSKEWNYCVGLHNEINLCDDPDAVLEKLLALIAFFLSKHNTCDLSDLIESYFENTTILQSVASAYAALPSWIAYEKARADLEEAKKNDVSPQLLKQLTKACNIAKSEFEREASVQKKLDKMAEQAAASMYKEARAVDRKSKIVSAMHSLLFGMLKKLDMSSVNTIIEQARNGVLPLSIIPAASATRLIVVTPNLEVLSKVRQENNVHYAGAIWSIVEVKDANGAQVHLKEVTAANELNITWPLSITCERTTKLQNNEILPGKLKEKAVKASATIDGDAYGSGKALMASEGGKSFIYAFIASDSNLKYVKWESNNDVIPIELEAPLRFYVDGVNGPEVKYLYFVKSLNTLRRGAVLGYIGATVRLQAGKPTEHPSNSGLLTLCAFAPDPAKAYVDAVKRGMQPVTNCVKMLSNGAGNGMAITNGVESNTQQDSYGGASVCIYCRCHVEHPAIDGLCRFKGKFVQVPTGTQDPIRFCIENEVCVVCGCWLTNGCMCDRTSIQGTTIDQSYLNECGVLVQLDLEPCNGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKHDAYYVVKRCTKSVMDHEQVCYNDLKDSGVVAEHDFFLYKEGRCEFGNVARKDLTKYTMMDLCYAIRNFDEKNCEVLKEILVTLGACNESFFENKDWFDPVENEAIHEVYARLGPIVANAMLKCVAFCDAIVEKGYIGIITLDNQDLNGNFYDFGDFVKTTPGFGCACVTSYYSYMMPLMGMTSCLESENFVKSDIYGADYKQYDLLAYDFTDHKEKLFHKYFKHWDRTYHPNCSDCTSDECIIHCANFNTLFSMTIPSTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLDTMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGVTYQTVKPGHFNKDFYDFITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFECYDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQMNLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNMLKNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHSDRFYRLSNELAQVLTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKSIQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAFKATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGVFVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDSFSVTMLEEGQDKFWSEEFYASLYEKSTVLQAAGMCVVCGSQTVLRCGDCLRRPLLCTKCAYDHVMGTKHKFIMSITPYVCSFNGCNVNDVTKLFLGGLSYYCMDHKPQLSFPLCANGNVFGLYKSSAVGSEDVEDFNKLAVSDWTNVEDYKLANNVKESLKIFAAETVKAKEESVKSEYAYAILKEVIGPKEIVLQWEASKTKPPLNRNSVFTCFQISKDTKIQLGEFVFEQSEYGSDSVYYKSTSTYKLTPGMIFVLTSHNVSPLKATILVNQEKYNTISKLYPVFNIAEAYNTLVPYYQMIGKQKFTTIQGPPGSGKSHCVIGLGLYYPQARIVYTACSHAAVDALCEKAAKNFNVDRCSRIIPQRIRVDCYTGFKPNNTNAQYLFCTVNALPEASCDIVVVDEVSMCTNYDLSVINSRLSYKHIVYVGDPQQLPAPRTLINKGVLQPQDYNVVTQRVCTLGPDVFLHKCYRCPAEIVKTVSALVYENKFVPVNPESKQCFKMFVKGQVQIESNSSINNKQLEVVKAFLAHNPKWRKAVFISPYNSQNYVARRLLGLQTQTVDSAQGSEYDYVIYTQTSDTQHATNVNRFNVAITRAKVGILCIMCDRTMYENLDFYELKDSKIGLQAKPETCGLFKDCSKSEQYIPPAYATTYMSLSDNFKTSDGLAVNIGTKDVKYANVISYMGFRFEANIPGYHTLFCTRDFAMRNVRAWLGFDVEGAHVCGDNVGTNVPLQLGFSNGVDFVVQTEGCVVTEKGNSIEVVKARAPPGEQFAHLIPLMRKGQPWHIVRRRIVQMVCDYFDGLSDILIFVLWAGGLELTTMRYFVKIGRPQKCECGKSATCYSSSQCVYACFKHALGCDYLYNPYCIDIQQWGYTGSLSMNHHEVCNIHRNEHVASGDAIMTRCLAIHDCFVKRVDWSIVYPFIDNEEKINKAGRIVQSHVMKAALKIFNPAAIHDVGNPKGIRCATTPIPWFCYDRDPINNNVRCLEYDYMVHGQMNGLMLFWNCNVDMYPEFSIVCRFDTRTRSKLSLEGCNGGALYVNNHAFHTPAYDRRAFAKLKPMPFFYYDDSNCELVDGQPNYVPLKSNVCITKCNIGGAVCKKHAALYRAYVEDYNMFMQAGFTIWCPQNFDTYMLWHGFVNSKALQSLENVAFNVVKKGAFTGLKGDLPTAVIADKIMVRDGPTDKCIFTNKTSLPTNVAFELYAKRKLGLTPPLTILRNLGVVATYKFVLWDYEAECPFSNFTKQVCSYTDLDSEVVTCFDNSIAGSFERFTTTKDAVLISNNAVKGLSAIKLQYGFLNDLPVSTVGNKPVTWYIYVRKNGEYVEQIDSYYTHGRTFETFKPRSTMEEDFLSMDTTLFIQKYGLEDYGFEHVVFGDVSKTTIGGMHLLISQVRLAKMGLFSVQEFMTNSDSTLKSCCITYADDPSSKNVCTYMDILLDDFVTIIKSLDLNVVSKVVDVIVDCKAWRWMLWCENSQIKTFYPQLQSAEWNPGYSMPTLYKIQRMCLERCNLYNYGAQVRLPDGITTNVVKYTQLCQYLNTTTVCVPHKMRVLHLGAAGASGVAPGSTVLRRWLPDDAILVDNDLRDYVSDADFSVTGDCTSLYIEDKFDLLISDLYDGSTKSIDGENTSKDGFFTYINGFIKEKLSLGGSAAIKITEFSWNKDLYELIQRFEYWTVFCTSVNTSSSEGFLIGINYLGPYCDKAIVDGNIMHANYIFWRNSTIMALSHNSVLDTPKFKCRCNNALIVNLKEKELNEMVVGLLRKGKLLIRNNGKLLNFGNHLVNVP", "sequence_length": 6709, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3a419543d5ae5845c679c40875043da029f066776706ef81de08fd99d1dc39ec", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q98VG9.json", "taxon_id": "33734", "uniprot_accession": "Q98VG9", "uniprot_release": "2026_03" } ], "pfam_id": "PF19213", "short_name": "CoV_NSP6", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5881-pf19228.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5881-pf19228.yaml" } ], "pfam_ids": [ "PF19228" ], "protein_name": "Uncharacterized protein L737", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVAPRISPKIVLVGFALFAIISASLAFPSGLNCPDPKPYPKFFLDSLWSGPSGYLGTTLIQGYVMIDTTGEFDFAKVASINGTFLQYYSKVLGTYVSEMYINLFGQQVKVMEAPFTLLERNPFNRFGEYCMVSNPRSVMPGYVEGLPITNKFFYNTYYNDTHGKSFGNVEQSEYFFFDETRNNSINCLTEFNPDATIKTFTCYKFQKVSNNVIPPTSKRSIEDMDSLRIGGLDLPEELVAPKYRHYFK", "sequence_length": 248, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a916092cbd28f25e68e917833591b45e4af7cfea3eae115d903f98c18bc61d62", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UNY7.json", "taxon_id": "212035", "uniprot_accession": "Q5UNY7", "uniprot_release": "2026_03" } ], "pfam_id": "PF19228", "short_name": "DUF5881", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19229", "short_name": "DUF5882", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19230", "short_name": "DUF5883", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5884-pf19231.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5884-pf19231.yaml" } ], "pfam_ids": [ "PF19231" ], "protein_name": "Uncharacterized protein L885", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKLVPDVFKNKISDIIIEDDFDKENLVQETIACIEFDNFECKFECYKFQSSKSDSPESDISHNINIYTPIIYDYQNYQIDNSAVDILNQLNLKNNTFNRKMLFVLIHNFTMRVTDLCGYSIGLSEFNCDKIDKIKKKIQILVD", "sequence_length": 144, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "202e6130e685789b47b570ec8700173daaf9dab69bcce325af9bbb1e7e59bb54", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQY5.json", "taxon_id": "212035", "uniprot_accession": "Q5UQY5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5884-pf19231.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5884-pf19231.yaml" } ], "pfam_ids": [ "PF19231" ], "protein_name": "Uncharacterized protein R898", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNELIYFDRKKRLESILNHIKKLDYDDLRQIKKAILQQEFELDFNSCIPIIFETKIKTMKYKSSHDNPNWEYSDGIKCKFKMEFDNDCSIDLYCEYTTYYDGGDLEYTDIDNNRSININIGQKTYTIDFDADNYQTIFVINNDALKLLDSLSIDKSDSNKKCLGILIYNIVGITKPEDYHESFDIMSCDNFDDIVFIYEPY", "sequence_length": 201, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c786352d4b811656402e6591ef64ed1bd9fc0a49091db6d36b71bfb7fa4e1164", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQY7.json", "taxon_id": "212035", "uniprot_accession": "Q5UQY7", "uniprot_release": "2026_03" } ], "pfam_id": "PF19231", "short_name": "DUF5884", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19232", "short_name": "DUF5885", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5886-pf19233.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19233", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5886-pf19233.yaml" } ], "pfam_ids": [ "PF19233" ], "protein_name": "Uncharacterized protein L494", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDNIDSYDNYSEELSSFNPIFRNFTHITSDSENLDSQFIKNSLGVDLDKYTKDSSLLFMIESEYFCDFCNGKPLNLIKYYLLVVLGSSKDVSDPIGYIPYPDKSSIHDCNLYNEFFMKHPHSLLQQDESSCNGDCKLDDLMTLCKWCPICYNKLCNATNLQKILRSAISFTAIPQSSVLYVRRNTKKINYNDINDLELVKKFLNYDKLKIECIKQRIENADNKIKTYVEMITKEKIYNTKILETLLEERGGSLENYNCLITGIDSLLNKNTDN", "sequence_length": 273, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0e32488b55b2cd089312864ad93a0b2d6c431f1b3833fdfef8a609a784ab1a00", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQG6.json", "taxon_id": "212035", "uniprot_accession": "Q5UQG6", "uniprot_release": "2026_03" } ], "pfam_id": "PF19233", "short_name": "DUF5886", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19234", "short_name": "DUF5887", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19235", "short_name": "DUF5888", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5889-pf19237.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19237", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5889-pf19237.yaml" } ], "pfam_ids": [ "PF19237" ], "protein_name": "Uncharacterized protein R650", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIQNNPKSIGSSSNKSARSSGSRQNILKMIQFENQRLHEYYNDFSSLKETILTAPSIVEYLFQKPSMKYDTIEKIYKLFTDPKSNYLENYTNITRVTKYISDYLFADMIELIELQDKYHVCNDNYNYYVDMILKNRNKYPKYTYLSQRYTPLIQTIGDTLDNIQLVEKYVDDDGAKISIKYEISWIYNWTFKNDCKYNLDIPFVFDFFVVLVYRERLILFVIEVDRDINNPLYHTESIIKQIILFQMNVFVLRISQQHLKDNLKKRIIRFIKNAVSSKVYLSEKYITPNINLIDMDLVKLELEKFYQSYKCCNSYYHKSLLDNSTIYPDPIKNKFHNGRNMGITLKTDKIYNKDDDEYFDTLIGTKFTREPDIPIVVTDDVFDWIINKCPKEPSKKQYSERKISEKQQKYNDICISLVGKII", "sequence_length": 422, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "49493ae596f3a700b465b7d3154a2fe459de2412de9d32e0bdf5444d430b739b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UR07.json", "taxon_id": "212035", "uniprot_accession": "Q5UR07", "uniprot_release": "2026_03" } ], "pfam_id": "PF19237", "short_name": "DUF5889", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19240", "short_name": "DUF5890", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5891-pf19241.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19241", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5891-pf19241.yaml" } ], "pfam_ids": [ "PF19241" ], "protein_name": "Uncharacterized protein 054L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASEATVESVETKVESPIVESPVDQGLLESIKNFMDDLAVVTENENFQDYHTIVRRIDETKVKSYNKLVGGFREFFSLNKTALMEGNFEGLIEPHISYKTESGSFFFNFQTTYLETDEANQEIIKEHLNHIWAQIRSENKCPEQLYIDEIFQKLKNKDQLTMDDQLIRDLFTKFQTANFNVTALIRAGCSKAREFLTNNGSQKSSSTFRLIETIENVNVDNFTQMDFMALISKISAIFSESGESNPLNLCLSSLFGGGNTNQPSLTSMFPFPTPPLPDNVLLDNLDQLTLEQQSETTGDDDHHSFEPEK", "sequence_length": 309, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dd7a69d8eaf5bc0b99a41b1078785f48fad31583d9b443f5a23d58b19a8f4a56", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q197A6.json", "taxon_id": "345201", "uniprot_accession": "Q197A6", "uniprot_release": "2026_03" } ], "pfam_id": "PF19241", "short_name": "DUF5891", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Frog virus 3 (isolate Goorha)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5892-pf19243.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19243", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5892-pf19243.yaml" } ], "pfam_ids": [ "PF19243" ], "protein_name": "Uncharacterized protein 89R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MACYSPRCDSPYPYADWDDCESVSSLGSFGCDYDHHEEASFQDPLAVGDDDVFEEPERVHGPIVDICKVDRMSEEEERMAIATRKAKEVAKELSETMSGKLRWLSDFTCDKPGPKRRKKKGLSMVDYPTLGSEAPAGSRIKMSKIGKGCTLVMASGGTRVEGSHPLVREFNGEKPPKNVGRKSGPAWFGYLSAKNATDKKTGSKQSDKEVEDDWTFVSKKGKGIQPEDAKPQGVKHQHAIRRDDRHRHGMRGTRYGAPNYGYRYQQQQCPVQGQQSRGQWQRRHCEGEGQWTQRRPAQQQQRPAQQQQRPAQQQQRPAQQQQRPAQQQQRPAQQQQRPAQQQQRPAQQPPQKPLRKRKPPPTNQRIVKPQKPKTPEPQPPQQDWFDSV", "sequence_length": 388, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d2d70ba7c73db68dbdca2e96557c23b411d25187ba1c0b17febf2c62da94e36b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6GZN6.json", "taxon_id": "654924", "uniprot_accession": "Q6GZN6", "uniprot_release": "2026_03" } ], "pfam_id": "PF19243", "short_name": "DUF5892", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19245", "short_name": "DUF5893", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5894-pf19246.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19246", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5894-pf19246.yaml" } ], "pfam_ids": [ "PF19246" ], "protein_name": "Uncharacterized protein L531", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVKNQYISQNMENKEIENKEIENKKTDSKEFDKEIVSCLIKIVETIDSIKPIDPEILNKKDLDLFDLMMPLAESCGMGWYYKQLQTECKSNKEIKLQNKQQENSEEKNSEEKNSEEKNSEEKRMLEILNSNLPTEGKIIIVNATNGKERKAFYTWADYHNLSHQPTRIDLFDDTFIFKCEECGESNYDDDMRYQSDWSTINPGACYGSFIKCPNYCDTFIHTEDYDPYGGIKRMIAFNAIIIGHDIPKLSRKTTKRKHNKQGLSSNDLSVFNDTPVRDFIVMDLNDFHSKFKSKDNGYVKINDE", "sequence_length": 304, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "26843906020f4d51b6e32bbc10c94f04ed7d5634b14d9916baf70fe7c0d5f0bc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQ91.json", "taxon_id": "212035", "uniprot_accession": "Q5UQ91", "uniprot_release": "2026_03" } ], "pfam_id": "PF19246", "short_name": "DUF5894", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 6", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5895-pf19247.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19247", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5895-pf19247.yaml" } ], "pfam_ids": [ "PF19247" ], "protein_name": "Uncharacterized protein 254L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNQEMNYENTEMEQPTVVFPPENAELFDFDSDDNRTSAKTPALKAIGGGIKDKNGKVIGAGLWMAHENAEICQWKKDCTDTCDYSCMDHLKGMTPHGVDTKKVDDDGNDIIIPGSVILKPRMLVIGRSPLLKISEDSGYTVGVWVKGDNRFKGPDGKKNLYACVRRYFIIFLDEANKPLHDISQPIQLTARGYFQMEFDKMLMFFRSTMIKAYCEAMKKNATNMKEAWHSMCVFAPLFKSEMKGPSKDKQSKACITYGFDKPTKDNWLTMCVGRNKEAQDIYKIHVENKEWWQKSIKKDLQKSEEEEHPNDDHVYMTEEDDMEKIERGIESLGNGH", "sequence_length": 336, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9a127b2bdebc5b55492a47467bd50388b1a46dd3131f857c9cea3245ac440e7b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q91FR8.json", "taxon_id": "176652", "uniprot_accession": "Q91FR8", "uniprot_release": "2026_03" } ], "pfam_id": "PF19247", "short_name": "DUF5895", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19248", "short_name": "DUF5896", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19249", "short_name": "DUF5897", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19250", "short_name": "DUF5898", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Paramecium bursaria Chlorella virus 1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5899-pf19251.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19251", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5899-pf19251.yaml" } ], "pfam_ids": [ "PF19251" ], "protein_name": "Minor capsid protein P2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCNTYYKRVKFNLFLYTNSIEMELLAVASIIGYGLFSSQQGRETRPDRNRYAEALGSGQGLDEDYDVKPTDMVRKYRKKAEKRWKKAQVPKESGIITPNMRPSEVMPYFTSGKSMNTNTDYKQRKMELFTGGVLDGHSVSGTYKHKVEAANMFGMTPQGRVTSDGTVGNAPGDTELLKARSVNSHQYNNVLPTEQLRVGPGLGVGPEVAATGGFHQFYRQLPLNINEYKLTQLPGRLVPGGTTTGGKGEIQQIASVNHNPDALVLNYDDRPPEATPNGAILASTQYGKQPRGYAGLRPYEKNYEGIAEADVSALQARYLDQTRGRPRTGDGDTEPIINPNGERDGTGSYVTENMCSMTLESQRGLVNRYITPPGVTGVVQQGGEMRPEFVPETTIREQYEDIYYTGPAGTTVTPTEPMNVVELQPESRHAKRAGQDRAYTPGAGRVNNFAPAAQGAYGLKDHPTYNALQHVVSEPIEQTFLPAAQGDDDRFGTKSNVNNPWGNPASLQIANNQLAANKFNRDVTNTVNLDYDAGQPMKQQNFQPKAWIPNNTDDMKMLPLWKRKQLQAQKNKQQRK", "sequence_length": 576, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d8c28f237987101e67f530b78abbbc24669e0d13d15b19dfccccd0e3e7c0c44c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q84656.json", "taxon_id": "10506", "uniprot_accession": "Q84656", "uniprot_release": "2026_03" } ], "pfam_id": "PF19251", "short_name": "DUF5899", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19253", "short_name": "DUF5900", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19254", "short_name": "DUF5901", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19255", "short_name": "DUF5902", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19260", "short_name": "DUF5903", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19261", "short_name": "DUF5904", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19262", "short_name": "DUF5905", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Nitratiruptor phage NrS-1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5906-pf19263.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19263", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5906-pf19263.yaml" } ], "pfam_ids": [ "PF19263", "PF22761", "PF22762", "PF22763" ], "protein_name": "DNA Primase-polymerase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIMEIPAIKALSRYAQWVIWKKERDTKIPYNPNNGKKASSTDPLAWGDIDEAQAGLVRYGANGLGFVLTKSDPFVFIDLDHVLDENKRVKCEWARQLLKEIKSYTEISPSGDGLHVVVSGKLPDYIKHKTKFDDGSALEVYESGRYMTITGEVFDGRDDIKELDLSILGEFAEHKIETKNAPVQIESATTLDDEAIIDLMKRKGQWPDAPKDGDDWSSLDMSFANRLAFWCGKDIERMDRIFRQSPLMRQKWDRPTAGSTYGRITLKKACDFVDSVYDPALRNESDCPFEPYNEEGGPRNDKEEKDPLWLYKVLLTKGIEVWFDIKLEKYGIKRNNRVDYIAKSSLQQIVFEIIGKTPKNIAVPTYIGAYEPSKPEKWEEEGIKYINLFKPTPLMKVKPVKEMPEIVKNLLLNLFDYDAKSMGLFINWLAFIYQYKERTGVAWIFMGKQGTGKGLLVDLLKKIFEEHMSSNITDANLDSQFNPYLYNKLIVHLNEVSADNRKSRMLVKNRLKTWITDETLYINRKNMKEVEIKNFCNFIINSNETIPVDIEDSDRRFNVIECNNVLKEQEWWTTESYQEILNNAEGFAKYLAGIKVDRSKVNEVVMSEKKKAIVETTESVLKQIAKALTDRDIEWFLDNGLEGVVEKNIVNDFQWEELQEAITTGVIPNKYLMIIVEQILGDSKTITWIKRNIITPYQVGETTVVKMAGKPIRAIVVG", "sequence_length": 718, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c71b14ddab17afc222e0d44923249d7fceda757299283f7aedb508a707bac82", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/M5AAG8.json", "taxon_id": "1230469", "uniprot_accession": "M5AAG8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage P4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/d5-n-pf08706.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08706", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/d5-n-pf08706.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5906-pf19263.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19263", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5906-pf19263.yaml" } ], "pfam_ids": [ "PF03288", "PF08273", "PF08706", "PF13362", "PF19263" ], "protein_name": "Putative P4-specific DNA primase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKMNVTATVSHALGHWPRILPALGIQVLKNRHQPCPVCGGSDRFRFDDREGRGTWYCNQCGAGDGLKLVEKVFGVSPSDAAAKVAAVTGSLPPADPAVTTAAVDETDAARKNAAALAQTLMAKTRTGTGNAYLTRKGFPGRECRMLTGTHRAGGVSWRAGDLVVPLYDDSGELVNLQLISADGRKRTLKGGQVRGTCHTLEGQNQAGKRLWIAEGYATALTVHHLTGETVMVALSSVNLLSLASLARQKHPACQIVLAADRDLSGDGQKKAAAAADACEGVVALPPVFGDWNDAFTQYGGEATRKAIYDAIRPPAESPFDTMSEAEFSAMSTSEKAMRIYEHYGEALAVDANGQLLSRYENGVWKVLPPQDFARDVAGLFQRLRAPFSSGKVASVVDTLKLIIPQQEAPSRRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAGGRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLESPRERAALTGFSLIRLPDQEKWSGDGAGLKAITGGDAVSVDPKYRDAYSTHIPAVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIVRHLMQKFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIGYLETLPQTSGMYMGNASIIPRNYRKYLYHAYLAYMEANGYRNVLSLKMFGLGLPVMLKEYGLNYEKRHTKQGIQTNLTLKEESYGDWLPKCDDPTTA", "sequence_length": 777, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b010d990ad081629e15807763fbc1a2576ba0619b58e55e441d58d8d974417b1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P10277.json", "taxon_id": "10680", "uniprot_accession": "P10277", "uniprot_release": "2026_03" } ], "pfam_id": "PF19263", "short_name": "DUF5906", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 6", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf5907-pf19264.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf5907-pf19264.yaml" } ], "pfam_ids": [ "PF19264" ], "protein_name": "Uncharacterized protein 443R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFNLNNALDDKITVVRGIPGDIVIFGIDGTIADSGVPVSIGSGQAKQPTAVPGDLAVFGSGVNQGQTIDSGLTVDDSSVSLPTVLWSSQKIESLIPTGSFLPLAGGTMTGTIISKDIVVPSGNVITLTDLPTVGTSAANKTYVDSKVSPGGPFLPLTGGTMSGDIVIQTGDIISIADLPITANSAANKAYVDSQISSGVPNATPTVLGKIQLAGDFDVTSTATVPVIKSATTSLEGKIQLAGDFDSSSTASIPIIKSATTLIEGKIQLAGDLTGTATSPLVAPGSITISKMAPLSASSKLIGSSSSTTVAEIGVGGSLEISSGILQENIPSLSNIFLPLSGGTMAGNIIVPTGDYITITDPPTVGTGAANKAYVDANITPNATPTVLGKIQLSGDISGTAIAPVVSPGAITLSKMANLNAVSNLIGSSNTNVTPTNISLGSNLQMTGTTLNVNLTSLSGSFLSLLGGTMSGNIIIPSGDLISIADAPVSGTSAANKSYVDSQIIVNATPNATSTVLGKIQLTGDLLGSSATFPTVAPGAITLSKLANLSSPSKLIGSGSTSSSPANITLGTSLSMSGTSLNVVPTFSNPTFNGTISGTAVLGVSNGGTGNSTLTGYVVGNGTAPFTAVTSIPVSNVNGAVQSVNGVFPDLSGNVTVTLGTVTTGTLAALPPVGPPLVNGDIYVVSGDPTPSNNGLTFIYSTTPTNQWLEISPSFGSLDARYLQLSGGTMSGNIVIPSGNFITLTSLPVNPTDAANKSYVDVNITPSATTSLQGKVQLSGDLSGVASAPVITTGAITLTKMANLTSTSSLIGSSSTSTSPSQLSLGSNLQISGTTLDVNTSSLSGTFLPLTGGTMSGNIVIPTGDLISITDAPTIGTSAANKAYVDANITPNATSTVLGKIQLAGDLLGSSATLPTISAGAVTLSKMANLSTTMSLIGSSSTSNLVSQLSLGSNLQISGTTLDVNTSSLSGTFLPLAGGTMSGNIVIPTGDLISIADAPTVGTSAANKAYVDANITPNATTTVLGKIQLSGDFDSTSTATVPVIKSATSSIQGKIQLSGDLTGSSTSPTIAAGAITLVKMANLSGNSQIIGSSSTASTPTNLTLGSGLQISGTVLSVNSATLTVPPATATTIGGIEMLGDLTGSVATAPTVATGAITLAKMANLSGNSQIIGSSSTTSTPTNLTLGSGLQISGTVLSVNSATLTVPPATSTSLGGIEMLGDLTGSVATAPTVAAGAITLAKMANLSGNSQIIGSSSTASTPVNLTLGNFLQMTGTVLNVNSSSLSGTFLPLSGGTMSGNIVIPTGDLISIADAPTVGTSAANKAYVDAQIISATPNATTTTLGKIQLSGDFDSTSTATVPIIKSATSSIQGKIQLSGDLTGSSISPTVAAGAITLAKMANLSGNSQIIGSSSTTSSPTNLTLGSGLQISGTVLSVNSATLTVPPATATTIGGIEMLGDLTGSVATAPTVAAGAITLAKMANLSGSSQIIGSSSTTSAPTNLTLGSGLQITSTVLSISAATSSTLGGIEMLGDLTGSVATAPTVAAGAITLAKMANLSGNSQIIGSSSTASTPTNLTLGSGLQISGTVLSVNSATLTVPPATATTIGGIEMLGDLTGSVATAPTVAAGAITLAKMANLSGNSQIIGSSSTASTPTNLTLGSGLQISGTVLSVNSATLTVPPATATTIGGIEMLGDLTGSVATAPTVAAGAITLAKMANLSGNSQIIGSSSTASTPTNLTLGSGLQISGTVLSINSATLTVPPATATTIGGIEMLGDLTGSVATAPTVAAGAITLAKMANLSGNSQIIGSSSTASTPTNLTLGSGLQISGTILNVNTTSLSSTFLPLAGGTMSGNIIIPTGDLISIADAPLVGTSGANKSYVDSQIIANATPSATTGIQGKIQLAGDLGGSGTTASSPVISSGAITLTKMANLSGNSQIIGSGSTSSSPVNLTLGSGLQISGTVLSVNSATLTVPPATATTIGGIEMLGDLTGSVATAPTIAAGAITLAKMANLSGNSQIIGSSSTTSTPTNLTLGSGLQISGTVLSVNSATLTVPPATATTIGGIEMLGDLTGSVATAPTVATGAITLSKMANLSGNSQIIGSSSTTSTPTNLTLGSGLQISGTVLSVNSATLTVPPATATTIGGIEMLGDLTGSVATAPTVAAGAITLAKMANLSGTSQLIGSSSTTTSPANISLGSTLQMSGTTLSVNTSTLMLLVPSSVNGDLATLNASGQVIDSGVSINNSGLTSASLWNAAKLAITTNSWFAGTNPNTTAPTDRPATSSVLYVGTDASLWIWNGSVYISLIGAKVPTSVTRTFTTSTGASGFQISTINGAFVHYSVSISTTIGVGGTSTGTVNLEVSPTNSATPASWIVNGVISNSQSFAGLITLSSVQVQGGQLCTYVPAGYFVKLRTTSSGTTSFSYVAGIEVLDN", "sequence_length": 2432, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d1ed6a21fbad3f8b404fe41dde17a1ca92abb75a3660e1f250b342ac70363ea3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P18305.json", "taxon_id": "176652", "uniprot_accession": "P18305", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 3", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf5907-pf19264.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf5907-pf19264.yaml" } ], "pfam_ids": [ "PF19264" ], "protein_name": "Uncharacterized protein 008L", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSFKVYDPIAELIATQFPTSNPDLQIINNDVLVVSPHKITLPMGPQNAGDVTNKAYVDQAVMSAAVPVASSTTVGTIQMAGDLEGSSGTNPIIAANKITLNKLQKIGPKMVIGNPNSDWNNTQEIELDSSFRIVDNRLNAGIVPISSTDPNKSNTVIPAPQQNGLFYLDSSGRVWVWAEHYYKCITPSRYISKWMGVGDFQELTVGQSVMWDSGRPSIETVSTQGLEVEWISSTNFTLSSLYLIPIVVKVTICIPLLGQPDQMAKFVLYSVSSAQQPRTGIVLTTDSSRSSAPIVSEYITVNWFEPKSYSVQLKEVNSDSGTTVTICSDKWLANPFLDCWITIEEVG", "sequence_length": 347, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b9624b3253ce81ce1c375a7003d556c3356dee0d62e9e6b922e9a451f35b481c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q197F2.json", "taxon_id": "345201", "uniprot_accession": "Q197F2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Invertebrate iridescent virus 6", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf5907-pf19264.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf5907-pf19264.yaml" } ], "pfam_ids": [ "PF19264" ], "protein_name": "Uncharacterized protein 261R", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASFNIENPLQQLEQSGLAGVTLNDNAAPAANVIYSSLKSGGGGSTPPATTTSLGTIQLAGVLTGIATSPQLAAGSVGASQLAPGAVNASSIAPGSITGSSLAPGTITSTQLAPGSVGSSQIANGAVGSSQIANGAVGSSQIANGAVGASQIANGAIGPMQLAPLSGPSELIGSNSTSPNAMDITLGPSLQMSPAGVLSVNPSAVTVAPSTTTSLGTIQLAGVLTGTATSPQLAAGSVGASQLAPGAVTSSSIAPGSISGSSLAPGSVTSSQLAAGSVGTSQLAPLPAPSELLGSSSTSSAVTDIMLGSGLSMTGSVLSVNASTAVPPATSSSLGTVQLAGALTGSATAPSLAANSVGSSQISAGAVGATQLGANVVGNGQLAPLSGPSELIGSNSSSPAASNITLGTGLSMSSGGVLSVNASTAVPAATSSSLGTIQLAGALSGTATSPTLSAGSVGATQIVAGSVGATQLGANVVGNSQLAALSGPSELIGSASGSSDATNIILGSGLTMTGNTLNSTLGTIPIPVSQGGTGLTTIPSGSFLLGNGTSPVTTASSIPATMVTPNLVGSVNGVVPSSAGGNVAVVLGNVTTGVLSAQPAQPQPNGNIYVVSGDPTPANNGRTFISNGTTWNEVTNNIATTDARYVQLAGSTMNANANLVFPSTGHVTLNQTTFASTDAVTAQYVASQIASGSTPAATTTSLGTIQLAGSLTGTATSPSIASGVVTQTNMASNSIGSAQIIAGSVGATQLGANVVGTGQLAPLSANSELLGSNSSSPAATNITLGSGLSMTGSVLSVNASTAVPAATSSSLGTIQLAGALTGSATSPTLATGSVGATQIVAGSVGATQLGANVVGNGQLAPLSAPSELIGSNSASPNATNISLGSGLSMSSGGVLSVDASTAVPAATSSSLGTIQLSGALSGSATSPTLSAGSVGSTQIADGAVGASKIANGAVGATQIAANSVGTGQLAALSGTSQLIGSNSSSSAATNITLGTGLSMSSGGVLSATAIAPAPATSTSLGTIQLAGSLSGTATAPTIANNAIGTAQLANNAVETAQLANGAVGLSQLAPLPATSELIGSSSGSTTASAITLGSGLVMSAGGQLSVNLTGVSIPAATSSSLGGIQMLGDLTGSVATAPTVAPGAITLAKMANLSGNSQLIGSSKTSTTPTNITLGPSMSMTNSQLNGPISFLTSGNNPNTTAPSDRPAQQNTLYSGTDGSIWLYNGTNYVKINSGLTSTGSIVASLTNITFGNLVVQVGGIVNNANCSIFVMFNDSQTHQCTASLFSTYAANGSAQNIGNMYQPISGTFVGLQKVWGGGFLSQVGGMQTYVLIDQTFGKQWNISISAIASNSFFVSVLSVI", "sequence_length": 1361, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "550b95dde66f31d52eb7ce07353ba59d609dfe3c469eaaeb84687d23302b3967", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8QZQ8.json", "taxon_id": "176652", "uniprot_accession": "Q8QZQ8", "uniprot_release": "2026_03" } ], "pfam_id": "PF19264", "short_name": "DUF5907", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19265", "short_name": "DUF5908", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zswim1-3-c-terminal-domain-ipr045563.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045563", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zswim1-3-c-terminal-domain-ipr045563.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zswim1-3-helical-domain-ipr048326.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048326", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zswim1-3-helical-domain-ipr048326.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zswim1-3-rnaseh-like-domain-ipr048324.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048324", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zswim1-3-rnaseh-like-domain-ipr048324.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zswim3-n-terminal-domain-ipr048325.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048325", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zswim3-n-terminal-domain-ipr048325.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zswim1-3-c-pf19286.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19286", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zswim1-3-c-pf19286.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zswim1-3-helical-pf21600.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21600", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zswim1-3-helical-pf21600.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zswim1-3-rnaseh-like-pf21056.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21056", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zswim1-3-rnaseh-like-pf21056.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zswim3-n-pf21599.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF21599", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zswim3-n-pf21599.yaml" } ], "pfam_ids": [ "PF04434", "PF19286", "PF21056", "PF21599", "PF21600" ], "protein_name": "Zinc finger SWIM domain-containing protein 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELGSCFKTYEDFKECFSAYKKETRCSFIVRDCISVRFHNLNNGTSFREDILYVQVKFVCIRTQSNRKKTRKVDRCPAYLLLQYNETLDRLFISELNTQHIHADSNASGGIPASKPQAICLHKLPPVQLSIRKDLDTAEKPSVEPSFCLDKIHKPSNPEQEGISPSDMAKIAKVMKNFLTVDEGSMASFSVGTSQDLDRLSFQSSKMSDLFARFPETLLLHRVENSQGHILYAFLVENKERESRVVHFAVLKAETAPSVAKMLNIFTEFNSDWPKVKMVFVDPSFPHRAILQEIFPSARTLLSIYHTTRLLEKKLHQSSVNASFKRLMKEALREAVFVSSDASLKNLCEMSQVLLDEELFSFLQAHWFSCELLWYIHVRKGLHACNTYMDSLDIVTSKVSSLFREQRSLLDCILHFVDYIDFFNTKGLKSLPTNAPKLRRTRLPSTPPRPKKPFRICGGGDTRLPVEEVEETKADSAQSQLPQPQDQSSKAGMLDILHQSGSELAYKLCHNEWEVVQNSTHLVDEAGSSVAVQLLENSHQVSKDGCSCSCSFQQCYHLPCRHILALLHTSQQPVGEAMVCCRWQKKYQHLLDPNGELQDRGIIPNTDQPEKQGQNHMIRDLSRELANLLMQTEGPELEERCSTLRKIVDIWADPYQLPESSQQPVDFRDVGCLPFLWGKLEEADSPPLAEAMVHD", "sequence_length": 695, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "58ad9c1cb9e718a27a408b6a363dccac5d8d30782d3c52460ac87d64bdf2a211", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CFL8.json", "taxon_id": "10090", "uniprot_accession": "Q8CFL8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zswim1-3-c-terminal-domain-ipr045563.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045563", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zswim1-3-c-terminal-domain-ipr045563.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zswim1-3-helical-domain-ipr048326.yaml", "qualification_status": "NOT_ASSESSED", 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"Pfam:PF19296", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rela-ah-pf19296.yaml" } ], "pfam_ids": [ "PF02824", "PF04607", "PF13291", "PF13328", "PF19296", "PF28438" ], "protein_name": "GTP pyrophosphokinase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANEQVLTAEQVIDKARSYLSDEHIAFVEKAYLYAEDAHREQYRKSGEPYIIHPIQVAGILVDLEMDPSTIAGGFLHDVVEDTDVTLDDLKEAFSEEVAMLVDGVTKLGKIKYKSQEEQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRIVNLMKKKRAERELYVDEVVNEVKKRVEEVNIKADFSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRILVNSIKDCYAVLGIIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAHWAYKEGKAANEGATFEKKLSWFREILEFQNESTDAEEFMESLKIDLFSDMVYVFTPKGDVIELPSGSVPIDFSYRIHSEIGNKTIGAKVNGKMVTLDHKLRTGDIVEILTSKHSYGPSQDWVKLAQTSQAKHKIRQFFKKQRREENVEKGRELVEKEIKNLDFELKDVLTPENIQKVADKFNFSNEEDMYAAVGYNGITALQVANRLTEKERKQRDQEEQEKIVQEVTGEPKPYPQGRKREAGVRVKGIDNLLVRLSKCCNPVPGDDIVGFITKGRGVSVHREDCPNVKTNEAQERLIPVEWEHESQVQKRKEYNVEIEILGYDRRGLLNEVLQAVNETKTNISSVSGKSDRNKVATIHMAIFIQNINHLHKVVERIKQIRDIYSVRRVMN", "sequence_length": 734, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ab9d92519c8418639a4118aedc671acc8d77165f763342c922357fb18f48e625", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/O54408.json", "taxon_id": "224308", "uniprot_accession": "O54408", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/act-4-pf13291.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13291", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/act-4-pf13291.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rela-ah-pf19296.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19296", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rela-ah-pf19296.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AG20", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02824", "PF04607", "PF13291", "PF13328", "PF19296", "PF28438" ], "protein_name": "GTP pyrophosphokinase", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "df9c24f95a8bcb688dc535dfc7362e864846f60be1be10f17f43b7df53277243", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS", "sequence_length": 744, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "df9c24f95a8bcb688dc535dfc7362e864846f60be1be10f17f43b7df53277243", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AG20.json", "taxon_id": "83333", "uniprot_accession": "P0AG20", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/act-4-pf13291.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13291", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/act-4-pf13291.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/rela-ah-pf19296.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19296", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rela-ah-pf19296.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P0AG24", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF02824", "PF04607", "PF13291", "PF13328", "PF19296", "PF28438" ], "protein_name": "Bifunctional (p)ppGpp synthase/hydrolase SpoT", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "c7874c7bfd0e9dc750261e8bd199a8fbb5ce7d09c4ce7a4e61d0ae678a7f436a", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPGARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLNEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQHGDASIPPATQSHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETAQEFITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRNRN", "sequence_length": 702, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "c7874c7bfd0e9dc750261e8bd199a8fbb5ce7d09c4ce7a4e61d0ae678a7f436a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0AG24.json", "taxon_id": "83333", "uniprot_accession": "P0AG24", "uniprot_release": "2026_03" } ], "pfam_id": "PF19296", "short_name": "RelA_AH", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19299", "short_name": "DUF5914", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5915-pf19302.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5915-pf19302.yaml" } ], "pfam_ids": [ "PF00133", "PF08264", "PF19302" ], "protein_name": "Isoleucine--tRNA ligase, cytoplasmic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSESNAHFSFPKEEEKVLSLWDEIDAFHTSLELTKDKPEFSFFDGPPFATGTPHYGHILASTIKDIVPRYATMTGHHVERRFGWDTHGVPIEHIIDKKLGITGKDDVFKYGLENYNNECRSIVMTYASDWRKTIGRLGRWIDFDNDYKTMYPSFMESTWWAFKQLHEKGQVYRGFKVMPYSTGLTTPLSNFEAQQNYKDVNDPAVTIGFNVIGQEKTQLVAWTTTPWTLPSNLSLCVNADFEYVKIYDETRDRYFILLESLIKTLYKKPKNEKYKIVEKIKGSDLVGLKYEPLFPYFAEQFHETAFRVISDDYVTSDSGTGIVHNAPAFGEEDNAACLKNGVISEDSVLPNAIDDLGRFTKDVPDFEGVYVKDADKLIIKYLTNTGNLLLASQIRHSYPFCWRSDTPLLYRSVPAWFVRVKNIVPQMLDSVMKSHWVPNTIKEKRFANWIANARDWNVSRNRYWGTPIPLWVSDDFEEVVCVGSIKELEELTGVRNITDLHRDVIDKLTIPSKQGKGDLKRIEEVFDCWFESGSMPYASQHYPFENTEKFDERVPANFISEGLDQTRGWFYTLAVLGTHLFGSVPYKNVIVSGIVLAADGRKMSKSLKNYPDPSIVLNKYGADALRLYLINSPVLKAESLKFKEEGVKEVVSKVLLPWWNSFKFLDGQIALLKKMSNIDFQYDDSVKSDNVMDRWILASMQSLVQFIHEEMGQYKLYTVVPKLLNFIDELTNWYIRFNRRRLKGENGVEDCLKALNSLFDALFTFVRAMAPFTPFLSESIYLRLKEYIPEAVLAKYGKDGRSVHFLSYPVVKKEYFDEAIETAVSRMQSVIDLGRNIREKKTISLKTPLKTLVILHSDESYLKDVEALKNYIIEELNVRDVVITSDEAKYGVEYKAVADWPVLGKKLKKDAKKVKDALPSVTSEQVREYLESGKLEVAGIELVKGDLNAIRGLPESAVQAGQETRTDQDVLIIMDTNIYSELKSEGLARELVNRIQKLRKKCGLEATDDVLVEYELVKDTIDFEAIVKEHFDMLSKTCRSDIAKYDGSKTDPIGDEEQSINDTIFKLKVFKL", "sequence_length": 1072, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "db0f3462a29e104ebc0e49bcd95356018332f697a7b40a94adf6dae235929a92", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P09436.json", "taxon_id": "559292", "uniprot_accession": "P09436", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/anticodon-1-pf08264.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08264", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/anticodon-1-pf08264.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5915-pf19302.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5915-pf19302.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/aa-trna-ligase-i.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00178", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/aa-trna-ligase-i.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P41252", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00133", "PF08264", "PF19302", "PF23567" ], "protein_name": "Isoleucine--tRNA ligase, cytoplasmic", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7c0d63d62a51308bc24c12566177cbf7556da1df4de912200db997d56580ddd2", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLQQVPENINFPAEEEKILEFWTEFNCFQECLKQSKHKPKFTFYDGPPFATGLPHYGHILAGTIKDIVTRYAHQSGFHVDRRFGWDCHGLPVEYEIDKTLGIRGPEDVAKMGITEYNNQCRAIVMRYSAEWKSTVSRLGRWIDFDNDYKTLYPQFMESVWWVFKQLYDKGLVYRGVKVMPFSTACNTPLSNFESHQNYKDVQDPSVFVTFPLEEDETVSLVAWTTTPWTLPSNLAVCVNPEMQYVKIKDVARGRLLILMEARLSALYKLESDYEILERFPGAYLKGKKYRPLFDYFLKCKENGAFTVLVDNYVKEEEGTGVVHQAPYFGAEDYRVCMDFNIIRKDSLPVCPVDASGCFTTEVTDFAGQYVKDADKSIIRTLKEQGRLLVATTFTHSYPFCWRSDTPLIYKAVPSWFVRVENMVDQLLRNNDLCYWVPELVREKRFGNWLKDARDWTISRNRYWGTPIPLWVSDDFEEVVCIGSVAELEELSGAKISDLHRESVDHLTIPSRCGKGSLHRISEVFDCWFESGSMPYAQVHYPFENKREFEDAFPADFIAEGIDQTRGWFYTLLVLATALFGQPPFKNVIVNGLVLASDGQKMSKRKKNYPDPVSIIQKYGADALRLYLINSPVVRAENLRFKEEGVRDVLKDVLLPWYNAYRFLIQNVLRLQKEEEIEFLYNENTVRESPNITDRWILSFMQSLIGFFETEMAAYRLYTVVPRLVKFVDILTNWYVRMNRRRLKGENGMEDCVMALETLFSVLLSLCRLMAPYTPFLTELMYQNLKVLIDPVSVQDKDTLSIHYLMLPRVREELIDKKTESAVSQMQSVIELGRVIRDRKTIPIKYPLKEIVVIHQDPEALKDIKSLEKYIIEELNVRKVTLSTDKNKYGIRLRAEPDHMVLGKRLKGAFKAVMTSIKQLSSEELEQFQKTGTIVVEGHELHDEDIRLMYTFDQATGGTAQFEAHSDAQALVLLDVTPDQSMVDEGMAREVINRIQKLRKKCNLVPTDEITVYYKAKSEGTYLNSVIESHTEFIFTTIKAPLKPYPVSPSDKVLIQEKTQLKGSELEITLTRGSSLPGPACAYVNLNICANGSEQGGVLLLENPKGDNRLDLLKLKSVVTSIFGVKNTELAVFHDETEIQNQTDLLSLSGKTLCVTAGSAPSLINSSSTLLCQYINLQLLNAKPQECLMGTVGTLLLENPLGQNGLTHQGLLYEAAKVFGLRSRKLKLFLNETQTQEITEDIPVKTLNMKTVYVSVLPTTADF", "sequence_length": 1262, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7c0d63d62a51308bc24c12566177cbf7556da1df4de912200db997d56580ddd2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P41252.json", "taxon_id": "9606", "uniprot_accession": "P41252", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5915-pf19302.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19302", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5915-pf19302.yaml" } ], "pfam_ids": [ "PF00133", "PF08264", "PF19302", "PF23567" ], "protein_name": "Isoleucine--tRNA ligase, cytoplasmic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVQQVPENISFPAEEEKILEFWSKHNCFQECLKQSKLRPKFTFYDGPPFATGLPHYGHILAGTIKDIVTRYAHQSGFHVDRRFGWDCHGLPVEYEIDKTLGIKGPEDVAKMGIAEYNKQCRAIVMRYSAEWKSTVTRLGRWIDFDNDYKTLYPQFMESVWWVFKQLYDKGLVYRGVKVMPFSTACGTPLSNFESNQNYKDVQDPSVFVTFPLEEDENTSLVAWTTTPWTLPSNLALCVNPEIQYVKIKDVARGKLFILTEARLSALYKQESDYEILERFPGASLKGKKYKPLFDYFIKCKENGAFTVLVDHYVKDEEGTGVVHQAPYFGADDHRVCMDFNIIQKDSVPVCPVDASGCFTEEVTHFVGQYVKDADKNIIRMLKEQGRLLAAGTFTHSYPFCWRSDTPLIYKSVPSWFVRVEPMVDQLLKNNDLCYWVPEFVREKRFGNWLKEARDWAISRNRYWGTPIPLWVSEDLEEVVCIGSVAELEELSGTKISDLHRESIDHLTIPSRCGKAPLRRVSEVFDCWFESGSMPYAQVHYPFESKREFEDAFPADFIAEGIDQTRGWFYTLLVLATALFGQPPFKNVIVNGLILASDGQKMSKRKKNYPDPVSIIDKYGADALRLYLINSPVVRAENLRFKEEGVRDVLKDVLLPWYNAYRFFIQNVFRLHKEEEVKFLYNEHTVRESPNITDRWVLSFMQSLLGFFETEMAAYRLYTVVPRLVKFVDILTNWYVRMNRRRLKGESGVEDCVMALETLFSVLLSLCRLMAPYTPFLTELMYQNLKLLIDPASLRDKDTLSIHYLMLPRVREELIDKKTENAVSRMQSVIELGRVIRDRKTIPIKYPLKEIVVIHQDPEALEDIRSLEKYIIEELNVRKVTLSTDKNKYGIRLRAEPDHMVLGKRLKGAFKAVMMAIKRLSNEELERFQKSGSIVVEGHELHEEDIRLMYTFDQATGGTAQFEAHSDAQALVLLDVTPDQSMVDEGMAREVINRIQKLRKKCNLVPTDEITVYYNAKSEGRYLNNVIESHTDFIFATIKAPLKPYPVPTSDNILIQEQTQLKGSELEITLTKGSCVPGPACAYVNLNICANGTEQGGVLLLENPKGDNQLNLVKLKTVVTSVFGVKNAKLSVFHGETEIQNQTDLLSLSGRTLCVTAGASPSPISSPSTLLCQYLNLQLLNAEPQECLTGTVGTLLLENPLGQNGLTHQGLVHEAAKVFGLRSRRLRLFLNETQTQEITEDIPMKTLNMKTVYVSVLPTTADG", "sequence_length": 1262, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ce787711028b93eb224010f1fb280680934d81d2a52e63700abf5ae80db8cfeb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BU30.json", "taxon_id": "10090", "uniprot_accession": "Q8BU30", "uniprot_release": "2026_03" } ], "pfam_id": "PF19302", "short_name": "DUF5915", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19313", "short_name": "DUF5916", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 9, "discovery_scanned": true, "example_count": 9, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/fhf-complex-subunit-hook-interacting-protein-kelaa-motif-ipr045668.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/fhf-complex-subunit-hook-interacting-protein-kelaa-motif-ipr045668.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fhf-complex-subunit-hook-interacting-protein-c-terminal-ipr045669.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045669", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fhf-complex-subunit-hook-interacting-protein-c-terminal-ipr045669.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5917-pf19314.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19314", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5917-pf19314.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/rai16-like-pf10257.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rai16-like-pf10257.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q05DH4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF10257", "PF19311", "PF19314" ], "protein_name": "FHF complex subunit HOOK-interacting protein 1A", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "3a1a4f616f31a7ea200554fbcc0c077e227d7512483470f940b5c92b62326171", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MMSSVSTESKLQQAVSLQGVDPETCMIVFKNHWAQVVKILEKHDPLKNTQAKYGSIPPDEASAVQNYVEHMLFLLIEEQAKDAAMGPILEFVVSENIMEKLFLWSLRREFTDETKIEQLKMYEMLVTQSHQPLLHHKPILKPLMMLLSSCSGTTTPTVEEKLVVLLNQLCSILAKDPSILELFFHTSEDQGAANFLIFSLLIPFIHREGSVGQQARDALLFIMSLSAENTMVAHHIVENTYFCPVLATGLSGLYSSLPTKLEEKGEEWHCLLKDDWLLLPSLVQFMNSLEFCNAVIQVAHPLIRNQLVNYIYNGFLVPVLAPALHKVTVEEVMTTTAYLDLFLRSISEPALLEIFLRFILLHQHENVHILDTLTSRINTPFRLCVVSLALFRTLIGLHCEDVMLQLVLRYLIPCNHMMLSQRWAVKERDCYSVSAAKLLALTPVCCSSGITLTLGNQERDYILWSKCMHDTSGPVERPFPEAFSESACIVEYGKALDISYLQYLWEAHTNILRCMRDCRVWSALYDGDSPDPEMFLQSLTEEGSVSSACPVFGLPQQLPRKTGPQLAPRKDKSQTELEWDDSYDTGISSGADVGSPGPYDDLEVSGPPAPIDPPKHIQEMKKNALLLFKGSYIEESDFQDDVMVYRLCAEKDSEDMKDSQEEAARPPAEAQAEVQSVPINNGPLLSTQPETDSEEEWNRDNSDPFHSEPKEPKQEREPEAAPESNSELASPAPEAEHSSNLTAAHPESEELIAQYDQIIKELDSGAEGLMEQNYPTPDPLLLTKEEEGKEESKGEKEKEGKKELEDEEDDFDSFIAEMPAVETVPSPFVGRDEAAFASRHPVRTQSTPFTGPFISVVLSKLENMLENSLHVNLLLIGIITQLASYPQPLLRSFLLNTNMVFQPSVRSLYQVLASVKNKIEQFASVERDFPGLLIQAQQYLLFRVDMSDMTPAALTKDPIQEASRTGSGKNLLDGPPRVLQPFLTHRTKVAEAPPNLPLPVRNPMLAAALFPEFLKELAALAQEHSILCYKILGDFEDSCC", "sequence_length": 1040, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "3a1a4f616f31a7ea200554fbcc0c077e227d7512483470f940b5c92b62326171", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q05DH4.json", "taxon_id": "9606", "uniprot_accession": "Q05DH4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fhf-complex-subunit-hook-interacting-protein-c-terminal-ipr045669.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045669", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fhf-complex-subunit-hook-interacting-protein-c-terminal-ipr045669.yaml" } ], "pfam_ids": [ "PF10257", "PF19314" ], "protein_name": "FHIP family protein C05D11.8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRWLEKITSPLKPQESSSDWVRDELYSGTPTSVSRARWSSAYASDPTVWEQLFETKWSVVSNILERKLSDPEHKVVYDELMSLLENMTNMCTLLMLEANSQPEPIIGPILDKFFTEQILERVLDWSIQLTDSLKSICQLAIIRIFEMIVSDSHSQNHCLLVHKPILNPLFRLCEWFQRADIYWRVSKSENKKTSEAEKMFVLLLNQICTKLVEDRTLLHFFFHSNQFVVFTELIPFLYSAGDTGQLARDAVLLILSVSAEDKSIAEYVTERTSFCQVLTTGLSACFSQLPRIILGDGGERLVEDEYRDFLADYHSALLFCNAIAQTAHSEVVGNIASFFYTGFLTNVIKPAFLQNDREYIGASMVYLQMCLETIVEPVLVRSIVQMILTERDDNGTLFYEIVISYVKGGDKTSVTSLSLIDSFLKLACEDVMLALVFRPLLTNHSATKKQLSVVYKASRGGELSQTYLNCIPICMLEYREAASHALLSSYMYSTRIRMDARSEQCRSWKWKYDGVVAGSFVLPAESDDDATFNVSFSRMSSSRSSTSMTPYVSNRYSNGSHLSHVFNINKVCPLGQPQEQNADLSLSELDDDLEEDKDFILPSIDMEDVSEEMTASKVMTQSTIDYMHISGLDGSESDDALPIRIEDSERSETDSEAPKSNFVLSGWRDVKDMGTFKQLLSKQEVKGEKLDSSEIVDFINQKYDSLKLGEEKKEDIEEEESENETKGKEIKSRIVTDGFSIYNFPERSKLLQTILEGVETLCENELPFNTELFSLIADLATYPQPLLAYYLFDPKEDSSEKHLLTILQGVQTRIDVMAEGIESFEIWIERGFETLKARACRIKQQSTASSPRTSDDHDPTLFYGRSTMAPPGRKPLLREPSRQETLDDQTARRTALAAILLAHLCQMLASIVLQQSLII", "sequence_length": 920, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bedd9330136eeb9c73ce8eda6c1c5d41fec7ec75d963c7821de85c9faaa91e04", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q11187.json", "taxon_id": "6239", "uniprot_accession": "Q11187", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/fhf-complex-subunit-hook-interacting-protein-kelaa-motif-ipr045668.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/fhf-complex-subunit-hook-interacting-protein-kelaa-motif-ipr045668.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fhf-complex-subunit-hook-interacting-protein-c-terminal-ipr045669.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045669", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fhf-complex-subunit-hook-interacting-protein-c-terminal-ipr045669.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5917-pf19314.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19314", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5917-pf19314.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/kelaa-pf19311.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19311", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/kelaa-pf19311.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/rai16-like-pf10257.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rai16-like-pf10257.yaml" } ], "pfam_ids": [ "PF10257", "PF19311", "PF19314" ], "protein_name": "FHF complex subunit HOOK-interacting protein 1B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKMNWLSRLASRVPGHRVPQGASLQTPVMADPETCLMVFKNHWSQVVRILERQGPRAATGGADDLSAVRNHTYQMLTLLAEDRAVPSAPSGPGPLLEFALREDLLSRVLTWQLQWDEFGDGVEERRAEQLKLFEMLVSEARQPLLRHGPVREALLALLDACGRPVPSSPALDEGLVLLLSQLCVCVAREPSLLEFFLQPPPEPGAAPRLLLFSRLVPFVHREGTLGQQARDALLLLMALSDGSPTVGRYIADHSYFCPVLATGLSALYSSLPRKIEVPGDDWHCLRREDWIGVPALALFMSSLEFCNAVIQVAHPLVQKQLVDYIHNGFLVPVMGPALHKTSVEEMIASTAYLELFLRSISEPALLRTFLRFLLLHRHDTHTILDTLVARIGSNSRLCMVSLSLFRTLLNLSCEDVLLQLVLRYLVPCNHVMLSQKPAVRDVDLYGRAADKFLSLIPRCCRHHAPSPPRPEHASWARGPGSPSVDSSSVVTVPRPSTPSRLALFLRQQSLGGSESPGPVPRSPGLTASPTSSPSRRPSPAEEPGELEDNYLEYLREARRGVDRCVRACRTWSAPYDGERPPPEPNPLGSRTKKRSLLPEEDRDNVREGEEENLGSRGLAVGVGDTPGYLLPPQLNGVPGPWPEGAKKVRLVPRLVPQEGVRELLEGTSEDMAGLESFGQELQELEVALSNGGAGSEPPLEPPLPPEEEEAYESFTCPPEPPGPFLSSPLRTLHQLPSQPFTGPFMAVLFAKLENMLQNSVYVNFLLTGLVAQLACHPQPLLRSFLLNTNMVFQPSVKSLLQVLGSVKNKIESFAASQEDFPALLSKAKKYLIARGKLDWAEGPTAGPAPRRSDSLVRSRRPSLGELLLRHAHSPTRARQAVQVLQPGRDGTGLGLGGGSPGASTPVLLPRGGASERQGEALRVKNAVYCAVIFPEFLKELAAISQAHAVTSPFLLDTSEEVSLPPISGFGPLNP", "sequence_length": 975, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ae655ae40127cec5c388403f95c28c6e7cf3367fefea5331c27b8942353a665d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q3U2I3.json", "taxon_id": "10090", "uniprot_accession": "Q3U2I3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/fhf-complex-subunit-hook-interacting-protein-kelaa-motif-ipr045668.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/fhf-complex-subunit-hook-interacting-protein-kelaa-motif-ipr045668.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fhf-complex-subunit-hook-interacting-protein-c-terminal-ipr045669.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045669", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fhf-complex-subunit-hook-interacting-protein-c-terminal-ipr045669.yaml" } ], "pfam_ids": [ "PF10257", "PF19311", "PF19314" ], "protein_name": "FHF complex subunit HOOK-interacting protein 1A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMSSVSTESKLQQAVSLKGVDPETCMIVFKNHWAQVVKILEKHDPLKNTQAKYGSIPPDEASAVQNYVEHMLFLLIEEQAKDAAMGPILEFVVCENIMEKLFLWSLRREFTDETKLEQLKMYEMLVTQSYQPLLHHKPILKPLMMLLSSCSGTATPAVEGKLVVLLNQLCSILAKDPSILELFFHTSEDQGAANFLIFSLLIPFIHREGTVGQQARDALLFIMSLSAENSMVANHIVENTYFCPVLATGLSGLYSSLPTKLEEKGEDWHCILKDDWLLLPALVQFMNSLEFCNAVIQVAHPLIRTQLVSYIYNGFLVPVLAPALHKVTVEEVMTTTAYLDLFLRSISEPALLEIFLRFILLHRHENVHILDTLTSRINTPFRLCVVSLALFRTLIGLHCEDVMLQLVLRYLVPCNHMMLSQRWAVKERDCYSVSAAKLLALTPVCCASGITLTLGNQERDYILWSKCMHDGSGSEEQLLPETPCSPSSPSPPPPPAPAACIVEYGKALDISYLQYLWEAHTNILHCMRDCRVWSALYDGDSPDPETFLQSLSEESRENSGHPEARLPQQSVRTSGQTKDKSQSELEWDDSYDTGISSGADVGSPGPDDEVETPAPPAPIDPPKHIQEMKKNAILLFKGSYIEESDFQDDVMVYRLCAEKDTEDTTEPQKDTSEPQGDTLEPLEDTSEQQEDTSEQLEDTSELQEDTAEPQGDTADPTAEAQPKLQPEAQSLPTSNGPLSSPDPETESQPSRESSDLCQNTFSEAKPENEPGVALALDSELIATTFEAEPQSELAVVSTESEDFIAQYDQIIQELDSGTEGLTEQSIPISEPSLLTQQEERREECKEEEDDDFDSLMAATPAVEAGSSPFGVGEDTAFSSRHPVRTQSTPFTGPFISVVLSKLENMLENSLHVNLLLIGIITQLASYPQPLLRSFLLNTNMVFQPSVRSLYQVLASVKNKIEQFASVERDFPGLLIQAQQYLLFRVDMSDMAPAALTKDPIQEISRPESDKTLLDGPPRVLQPFLGNRAKVTRAPPNLPLPVKNTMLAAALFPEFLKELAALAQEHSILCYKILGDFEDSCC", "sequence_length": 1081, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "af7877302eb2d46c0a39f9415910aca081432e9019b6de39c5a792677fc2191d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q505K2.json", "taxon_id": "10090", "uniprot_accession": "Q505K2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/fhf-complex-subunit-hook-interacting-protein-kelaa-motif-ipr045668.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/fhf-complex-subunit-hook-interacting-protein-kelaa-motif-ipr045668.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fhf-complex-subunit-hook-interacting-protein-c-terminal-ipr045669.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045669", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fhf-complex-subunit-hook-interacting-protein-c-terminal-ipr045669.yaml" } ], "pfam_ids": [ "PF10257", "PF19311", "PF19314" ], "protein_name": "FHF complex subunit HOOK interacting protein 2A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFSKFTSILQHAVEALAPSLPLQEDFVYHWKAITHYYIETSDDKAPVTDTNIPSHLEQMLDILVQEENERESGETGPCMEYLLHHKILETLYTLGKADCPPGMKQQVLVFYTKLLGRIRQPLLPHINVHRPVQKLIRLCGEVLATPTENEEIQFLCIVCAKLKQDPYLVNFFLENKMKSLASKGVPNVISEDTLKGQDSLSTDTGQSRQPEELSGATGMEQTELEDEPPHQMDHLSTSLDNLSVTSLPEASVVCPNQDYNLVNSLLNLTRSPDGRIAVKACEGLMLLVSLPEPAAAKCLTQSTCLCELLTDRLASLYKALPQSVDPLDIETVEAINWGLDSYSHKEDASAFPGKRALISFLSWFDYCDQLIKEAQKTAAVALAKAVHERFFIGVMEPQLMQTSEMGILTSTALLHRIVRQVTSDVLLQEMVFFILGEQREPETLAEISRHPLRHRLIEHCDHISDEISIMTLRMFEHLLQKPNEHILYNLVLRNLEERNYTEYKPLCPEDKDVVENGLIAGAVDLEEDPLFTDISPENTLPNQEWLSSSPPATPDHPKNDGKTEVHKIVNSFLCLVPDDAKSSYHVEGTGYDTYLRDAHRQFRDYCAICLRWEWPGSPKALEKCNLEAAFFEGHFLKVLFDRMGRILDQPYDVNLQVTSVLSRLSLFPHPHIHEYLLDPYVNLAPGCRSLFSVIVRVVGDLMLRIQRIQDFTPKLLLVRKRLLGLEPEGPIIDHITLLEGVIVLEEFCKELAAIAFVKYHASSTP", "sequence_length": 765, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "31b6277c2e27bb4b914bfda69c4a16722c32deddc71a01ca8504de914fd507b7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5W0V3.json", "taxon_id": "9606", "uniprot_accession": "Q5W0V3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/fhf-complex-subunit-hook-interacting-protein-kelaa-motif-ipr045668.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/fhf-complex-subunit-hook-interacting-protein-kelaa-motif-ipr045668.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fhf-complex-subunit-hook-interacting-protein-c-terminal-ipr045669.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045669", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fhf-complex-subunit-hook-interacting-protein-c-terminal-ipr045669.yaml" } ], "pfam_ids": [ "PF10257", "PF19311", "PF19314" ], "protein_name": "FHF complex subunit HOOK-interacting protein 2B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSRLGALLQEAVGAREPSIDLLQAFVEHWKGITHYYIESTDENTPAKKTDIPWRLKQMLDILVYEEKQQASSGEAGPCLEYLLQHKILETLCTLGKAEYPPGMRQQVFQFFSKVLSQVQHPLLHYLSVHRPVQKLLRLGGTVPGSLTEKEEVQFTSVLCSKIQQDPELLAYILEGKKIIGKKKTARESTAPPKDIAGYRDKDCPHSDALNRDPGLDKEHCGVPALSIHLPAETEGPENGPGESNLITSLLGLCKSKKSRLALKAQENILLLVSVASPAAATYLTQSTSCCMAIAEHLCQLYRSMPACLDPADIATLEGISWRLPSAPSDETAFPGKEALAAFLGWFDYCDHLITEAHTVVADALAKAVAEKLFVETLQPQLLHVSEQSILTSTALLTALLRQLRSPALLQEAMTFLLGTDQHPAAIEDSPHTLGTHLIMHCDHLSDEISIATLRLFEELLQKPHEQAIRSLVLQNLEGRLYVARGSPEPESYEDTLDLEEDPYFTDGFLDSGLQPSTKPPPAPATSSDGKTAVTEIVNSFLCLVPEEAKTSAFLEENGYDTYVHDAYGLFQECSSRVAHWGWPLGPAPLDSHEPERPFFEGRFLQVLFDRIARILDQPYSLNLQVTSVLSRLALFPHPHIHEYLLDPYISLAPGCRSLFSVLVRVIGDLMQRIQRVPQFSGKLLLVRKQLMGQVPGEHLDHQTLLQGVVVLEEFCKELAAIAFVKFPPHGPYLNFSPPPEGQV", "sequence_length": 744, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b9e3cd5ed958bd2f0e7dba27fe2c521b1fa79049f079e9ffacc05a4760fd6ffb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q80YR2.json", "taxon_id": "10090", "uniprot_accession": "Q80YR2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/fhf-complex-subunit-hook-interacting-protein-kelaa-motif-ipr045668.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/fhf-complex-subunit-hook-interacting-protein-kelaa-motif-ipr045668.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/kelaa-pf19311.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19311", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/kelaa-pf19311.yaml" } ], "pfam_ids": [ "PF10257", "PF19311", "PF19314" ], "protein_name": "FHF complex subunit HOOK-interacting protein 2B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLSRLGALLQEAVGAREPSIDLLQAFVEHWKGITHYYIESTDESTPAKKTDIPWRLKQMLDILVYEEQQQAAAGEAGPCLEYLLQHKILETLCTLGKAEYPPGMRQQVFQFFSKVLAQVQHPLLHYLSVHRPVQKLLRLGGTASGSVTEKEEVQFTTVLCSKIQQDPELLAYILEGKKIVGRKKACGEPTALPKDTTSHGDKDCSHDGAPARPQLDGESCGAQALNSHMPAETEELDGGTTESNLITSLLGLCQSKKSRVALKAQENLLLLVSMASPAAATYLVQSSACCPAIVRHLCQLYRSMPVFLDPADIATLEGISWRLPSAPSDEASFPGKEALAAFLGWFDYCDHLITEAHTVVADALAKAVAENFFVETLQPQLLHVSEQSILTSTALLTAMLRQLRSPALLREAVAFLLGTDRQPEAPGDNPHTLYAHLIGHCDHLSDEISITTLRLFEELLQKPHEGIIHSLVLRNLEGRPYVAWGSPEPESYEDTLDLEEDPYFTDSFLDSGFQTPAKPRLAPATSYDGKTAVTEIVNSFLCLVPEEAKTSAFLEETGYDTYVHDAYGLFQECSSRVASWGWPLTPTPLDPHEPERPFFEGHFLRVLFDRMSRILDQPYSLNLQVTSVLSRLALFPHPHIHEYLLDPYISLAPGCRSLFSVLVRVIGDLMQRIQRVPQFPGKLLLVRKQLTGQAPGEQLDHQTLLQGVVVLEEFCKELAAIAFVKFPPHDPRQNVSPAPEGQV", "sequence_length": 743, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "131d53806565cbfb4dbe7f2359ed19953be7ad989f6f7df0a9820abb4888bf38", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q86V87.json", "taxon_id": "9606", "uniprot_accession": "Q86V87", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/fhf-complex-subunit-hook-interacting-protein-kelaa-motif-ipr045668.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/fhf-complex-subunit-hook-interacting-protein-kelaa-motif-ipr045668.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fhf-complex-subunit-hook-interacting-protein-c-terminal-ipr045669.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045669", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fhf-complex-subunit-hook-interacting-protein-c-terminal-ipr045669.yaml" } ], "pfam_ids": [ "PF10257", "PF19311", "PF19314" ], "protein_name": "FHF complex subunit HOOK interacting protein 2A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFSKLTSILQHAVEALAPSLPLQEDFVYHWKAITHYYIETSDDKAPVTDTNIPSHLEQMLDILVQEENERESGETGPCMEYLLHHKILETLYTLGKADCPPGMKQQVLVFYTKLLGRIRQPLLPHINVHRPVQKLIRLCGEVLATPTENEEIQFLCIVCAKLKQDPYLVNFFLENKSKSLVSRGALSVISEDGPKGQDPGSGDVSQCQQPQELSGATGVEPTESEEEPPHQMDDLSASLDDLNVTSLPEASAVRPNQDYNLVNSLLNLTRSPDGRIAVKACEGLMLLVSLPEPAAAKCLAQSTCLCELLTGRLTSLYKALPQSVDPLDIETVEAVNWGLDSYSHKEDASAFPGKRALISFLSWFDYCDQLIKEAQKTAAVALAKAIHERFFVGVMEPQLMQTSEMGILTSTALLHRIVRQVTSDVLLQEMVVFILGEQREPETLSEISRHPLRHRLIEHCDHISDEISIMTLRMFEHLLQKPNEHILYNLVLRNLEERNYTENKPSCPEDKDVVENGLIAGAVDLEEDPLFTDISPDNTLPNQEWICSPRTSPDHPKNDGKTEVHKVVNSFLCLVPDDAKSSYHVEGTGYDTYLRDAHRQFRDYCAICSRWEWPGAPKPLEKCDLEAAFFEGHFLKVLFDRMGRILDQPYDVNLQVTSVLSRLSLFPHPHTHEYLLDPYINLASGCRSLFSVIVRVVGDLMVRIQRIQDFTPKLLLVRKRLLGLEPEGPIVDHITLLEGVIVLEEFCKELAAIAFVKYHASATP", "sequence_length": 764, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c6f79fb02351052147211329f9ab911cabb407e161f8d90b57b9a01329db6a96", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CDM8.json", "taxon_id": "10090", "uniprot_accession": "Q8CDM8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/conservation/interpro/fhf-complex-subunit-hook-interacting-protein-kelaa-motif-ipr045668.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045668", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/conservation/interpro/fhf-complex-subunit-hook-interacting-protein-kelaa-motif-ipr045668.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/fhf-complex-subunit-hook-interacting-protein-c-terminal-ipr045669.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045669", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/fhf-complex-subunit-hook-interacting-protein-c-terminal-ipr045669.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5917-pf19314.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19314", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5917-pf19314.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/kelaa-pf19311.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19311", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/kelaa-pf19311.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/rai16-like-pf10257.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10257", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rai16-like-pf10257.yaml" } ], "pfam_ids": [ "PF10257", "PF19311", "PF19314" ], "protein_name": "FHF complex subunit HOOK-interacting protein 1B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERMNWLSRLASRGPGHRIPQGANLQTPVMADPETCLMVFKNHWSQVVRILERQGPRAAPGGADDLSAVRNHTYQMLTLLAEDRAVPSAPTGPGPLLEFALHEDLLTRVLTWQLQWDELGDGVEERRAEQLKLFEMLVSEARQPLLRHGPVREALLTLLDACGRPVPSSPALDEGLVLLLSQLCVCVAQEPSLLEFFLQPPPEPGAAPRLLLFSRLVPFVHREGTLGQQARDALLLLMALSAGSPTVGRYIADHSYFCPVLATGLSALYSSLPRKIEVPGDDWHCLRREDWLGVPALALFMSSLEFCNAVIQVAHPLVQKQLVDYIHNGFLVPVMGPALHKTSVEEMIASTAYLELFLRSISEPALLRTFLRFLLLHRHDTHTILDTLVARIGSNSRLCMVSLSLFRTLLNLSCEDVLLQLVLRYLVPCNHVMLSQKPAVRDVDLYGRAADKFLSLIPRCCRHHAPSPPRPEHASWARGPGSPSVDSSSVTTVPRPSTPSRLALFLRQQSLGGSESPGPAPCSPGLSASPASSPGRRPTPAEEPGELEDNYLEYLREARRGVDRCVRACRTWSAPYDGERPSPEPSPFGSRTKKRSLLPEEDRNNVGEGEEEELGRRGRAGGAGEGPGHLPPPQLNGVPGSWPEGAKKVRLVPKEGAGELLEGISEGMAGLEGFGQELRELEVALSNGGTGSESPLEPPLPLEEEEAYESFTCPPEPPGPFLSSPLRTLNQLPSQPFTGPFMAVLFAKLENMLQNSVYVNFLLTGLVAQLACHPQPLLRSFLLNTNMVFQPSVKSLLQVLGSVKNKIENFAASQEDFPALLSKAKKYLIARGKLDWAEGPAAGPAPRRSDPLVKSRRPSLGELLLRHAHSPTRARQAAQLVLQPGRDGAGLGLSGGSPGASTPVLLTRGGAPERQGEALRVKNAVYCAVIFPEFLKELAAISQAHAVTSPFLLETSEEGSGPLISGCGPLNP", "sequence_length": 972, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6554f0474e5e3e9ce4d8a56283eacdad75e0758e9daaeb61b05df00bf5ff55b4", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N612.json", "taxon_id": "9606", "uniprot_accession": "Q8N612", "uniprot_release": "2026_03" } ], "pfam_id": "PF19314", "short_name": "DUF5917", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5918-pf19318.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19318", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5918-pf19318.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O94941", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF04564", "PF14634", "PF19318" ], "protein_name": "RING finger protein 37", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "fa38ccec657e97305c828799487964a864183f4dcb43085584d945782a6597e5", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFNVEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGKVLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHVTGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQPESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLPSQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGPLSHEQKLSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSEQPGSILGPECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVHF", "sequence_length": 541, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "fa38ccec657e97305c828799487964a864183f4dcb43085584d945782a6597e5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O94941.json", "taxon_id": "9606", "uniprot_accession": "O94941", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5918-pf19318.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19318", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5918-pf19318.yaml" } ], "pfam_ids": [ "PF04564", "PF14634", "PF19318" ], "protein_name": "RING finger protein 37", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVNLCLPQFRPRIHCNKVSADGYEVENLISEDLIKRSHGFRTEYFIRPPIYVTVSFPFNVEICRVNIDLTTGGYQNVSGLELYTSALSSRVSQDAQDCWTTGPVETSVPDKEAFTLVGKVLLKNQNHVVFSHRGFKARPPFSPMEVTLLSPAVVAQELWNKGALSLSHVAHLKIGITHVTGSGISCIKRLEVWGQPARTCSQEVINSVLLIASESLPQDLDLHAPALPMESDCDPGGQSESQHSPCTLQDMSEVESDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNLSEAAWGRVPSDPFTGLAFTPQSQPLPHPSLKARIDRFLLQHSISGCRLLGRAQTPSAMTPSVITLPSRKRKTEQAEHSSHYSLGMSASSSATSPLFSPTTSEPTAKKMKATSELGLTDMDCSAGPVSHEQKLAQSLEIALTSTLGSMPSFTARLTKGQLQLGTRGSSACRRPASSSEHPRSVSGPECASCKQAFSSYSTNEPVYQLPCGHLLCRPCLSEKQRSQPMMCTACRQPVTSQDVLRVHF", "sequence_length": 539, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0905cfb05978c8826153e83b63f1dd5dcad5e6bf152ec615765bea920ca205ab", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q925F4.json", "taxon_id": "10090", "uniprot_accession": "Q925F4", "uniprot_release": "2026_03" } ], "pfam_id": "PF19318", "short_name": "DUF5918", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19319", "short_name": "DUF5919", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4062-pf13271.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13271", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4062-pf13271.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5920-pf19334.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5920-pf19334.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-tep1-2nd-pf25047.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25047", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-tep1-2nd-pf25047.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-tep1-c-pf25048.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25048", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-tep1-c-pf25048.yaml" } ], "pfam_ids": [ "PF00400", "PF05386", "PF05729", "PF05731", "PF13271", "PF19334", "PF25047", "PF25048" ], "protein_name": "Telomerase protein component 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKLCGYVPVHPDILSLKNRCLTMLSDIQPLEKIHGQRSVNPDILSLENRCLTLLPDLQPMEKIHGQRSVHPDILSSENRCLTLLPDLQSLEKLCGHMSSHPDVLSLENRCLATLPTVKRTVSSGPLLQCLHRSHTAQADLRDPNFRNCLFPEPPTIEAPCFLKELDLPTGPRALKSMSATARVQEVALGQRCVSEGKELQEEKESAEVPMPLYSLSLGGEEEEVVGAPVLKLTSGDSDSHPETTDQILQEKKMALLTLLCSAMASSVNVKDASDPTRASIHEVCSALAPLEPEFILKASLYARQQLNLRDIANIVLAVAALLPACRPHVRRYYSAIVHLPSDWIQVAEFYQSLAEGDEKKLVPLPACLRAAMTDKFAQFDEYQLAKYNPRKHRSKTRSRQPPRPQRTKPPFSESGKCFPKSVWPLKNEQISFEAAYNAVSEKKRLPRFTLKKLVEQLHIHEPAQHVQALLGYRYPSTLELFSRSHLPGPWDSSRAGQRMKLQRPETWERELSLRGNRASVWEELIDNGKLPFMAMLRNLCNLLRTGISAHHHELVLQRLQHEKSVIHSRQFPFRFLNAHDSLDRLEAQLRSKASPFPSNTTLMKRIMIRNSKKIKRPANPRYLCTLTQRQLRAAMAIPVMYEHLKREKLRLHKARQWTCDLELLERYRQALETAVNISVKHNLPPLPGRTLLVYLTDANANRLCPKSHLQGPPLNYVLLLIGMMMARAEQTTVWLCGTGTVKTPVLTADEGILKTAIKLQAQVQELEENDEWPLETFEKYLLSLAVRRTPIDRVILFGQRMDTELLNVAKQIIWQHVNSKCLFVSVLLRKMQYMSPNLNPNDVTLSGCTDGILKFIAEHGASRLLEHVGQLDKIFKIPPPPGKTKVSPLRPLEENNPGPFVPISQHGWRNIRLFISSTFRDMHGERDLLMRSVLPALQARAFPHRISLHAIDLRWGITEEETRRNRQLEVCLGEVENSQLFVGILGSRYGYTPPSYDLPDHPHFHWTQRYPSGRSVTEMEVMQFLNRGQRSEPSDQALIYFRDPGFLSSVPDVWKPDFISESEEAAHRVSELKRFLQEQKEVTCRRYSCEWGGVAAGRPYTGGLEEFGQLVLQDVWSVIQKRYLQPGAQLEQPGSISEEDLIQASFQQLKSPPSPARPRLLQDTVQQLMLPHGRLSLVIGQAGQGKTAFLASLVSALKVPDQPNVAPFVFFHFSAARPDQCLAFNLLRRLCTHLHQKLGEPSALPSTYRGLVWELQQKLLLKSAQWLQPGQTLVLIIDGADKLVDHNGQLISDWIPKSLPRRVHLVLSVSSDSGLGETLQQSQSAYVVALGSLVPSSRAQLVREELALYGKRLEESPFNNQMRLLLAKQGSSLPLYLHLVTDYLRLFTLYEQVSERLRTLPATLPLLLQHILSTLEQEHGHNVLPQALTALEVTHSGLTVDQLHAVLSTWLTLPKETKSWEEAVAASHSGNLYPLAPFAYLVQSLRSLLGEGPVERPGARLCLSDGPLRTAVKRRYGKRLGLEKTAHVLIAAHLWKMCDPDASGTFRSCPPEALKDLPYHLLQSGNHGLLAKFLTNLHVVAAYLEVGLVPDLLEAYELYASSKPEVNQKLPEADVAVFHNFLKQQASLLTQYPLLLLQQAASQPEESPVCCQAPLLTQRWHNQCILKWINKPQTLKGQQSLSLPISSSPTAVAFSPNGQRAAVGTAGGTIYLLNLRTWQEEKALVSGCDGISSFAFLSDTALFLTTFDGLLELWDLQHGCWVFQTKAHQYQITGCCLSPDRRLLATVCLGGYVKLWDTVQGQLAFQYTHPKSLNCITFHPEGQVVATGNWSGIVTFFQADGLKVTKELGGPGPSVRTLAFSAPGKVVALGRIDGTVELWAWQEGTRLAAFPAQCGGVSTVLFLHAGGRFLTAGEDGKAQLWSGFLGRPRGCLGSLYLSPALSVALNPDGDQVAVGYRGDGIKIYRISSGPQEAQCQELNVAVSALVWLSPSVLVSGAEDGSLHGWMLRRNSLQSLWLSSVCQKPVLGLAASQEFLASASEDFTVRLWPRQLLTQPHAVEELPCAAELRGHEGPVCCCSFSPDGRILATAGRDRNLLCWDVKVAQAPLLIHTFSSCHRDWITGCTWTKDNILISCSSDGSVGLWNPEAGQQLGQFPGHQSAVSAVVAVEEHIVSVSRDGTLKVWDRQGVELTSIPAHSGPISQCAAALEPRPAGQPGSELMVVTVGLDGATKLWHPLLVCQIHTLQGHSGPVTAAAASEASGLLLTSDNSSVRLWQIPKEADDTCKPRSSAVITAVAWAPDGSLVVSGNEAGELTLWQKAQAVATARAPGRVSDLIWCSANAFFVLSANENVSEWQVELRKGSTCTNFRLYLKRVLQEDLGVLTGMALAPDGQSLILMKEDVELLQMKPGSTPSSICRRYAVHSSILCTSKDYGLFYLQQGNSGSLSILEQEESGKFEKTLDFNLNLNNPNGSPVSITQAEPESGSSLLCATSDGMLWNLSECTPEGEWVVDNIWQKKSRNPKSRTPGTDSSPGLFCMDSWVEPTHLKARQCKKIHLGSVTALHVLPGLLVTASEDRDVKLWERPSMQLLGLFRCEGPVSCLEPWMEPSSPLQLAVGDAQGNLYFLSWE", "sequence_length": 2629, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d013807d2a5685be26fa59faf055e61c8ea766656d2cf34796c97daa8d39d99b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O08653.json", "taxon_id": "10116", "uniprot_accession": "O08653", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4062-pf13271.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13271", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4062-pf13271.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5920-pf19334.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19334", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5920-pf19334.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-tep1-2nd-pf25047.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25047", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-tep1-2nd-pf25047.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/beta-prop-tep1-c-pf25048.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25048", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/beta-prop-tep1-c-pf25048.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/trove-pf05731.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05731", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/trove-pf05731.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P97499", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00400", "PF05386", "PF05729", "PF05731", "PF13271", "PF19334", "PF25047", "PF25048" ], "protein_name": "Telomerase protein component 1", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "d1fb146d61e8603c6cdf5b76737d88b1d9f7264223e982265ac64a49bda0f779", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEKLCGHVPGHSDILSLKNRCLTMLPDLQPLEKIHGHRSVHSDILSLENQCLTMLSDLQPTERIDGHISVHPDILSLENRCLTMLPDLQPLEKLCGHMSSHPDVLSLENQCLATLPTVKSTALTSPLLQGLHISHTAQADLHSLKTSNCLLPELPTKKTPCFSEELDLPPGPRALKSMSATAQVQEVALGQWCVSKEKEFQEEESTEVPMPLYSLSLEEEEVEAPVLKLTSGDSGFHPETTDQVLQEKKMALLTLLCSALASNVNVKDASDLTRASILEVCSALASLEPEFILKASLYARQQLNLRDIANTVLAVAALLPACRPHVRRYYSAIVHLPSDWIQVAEFYQSLAEGDEKKLVSLPACLRAAMTDKFAEFDEYQLAKYNPRKHRSKRRSRQPPRPQKTERPFSERGKCFPKSLWPLKNEQITFEAAYNAMPEKNRLPRFTLKKLVEYLHIHKPAQHVQALLGYRYPATLELFSRSHLPGPWESSRAGQRMKLRRPETWERELSLRGNKASVWEELIDNGKLPFMAMLRNLCNLLRTGISARHHELVLQRLQHEKSVVHSRQFPFRFLNAHDSIDKLEAQLRSKASPFPSNTTLMKRIMIRNSKKNRRPASRKHLCTLTRRQLRAAMTIPVMYEQLKREKLRLHKARQWNCDVELLERYRQALETAVNLSVKHNLSPMPGRTLLVYLTDANADRLCPKSHSQGPPLNYVLLLIGMMVARAEQVTVCLCGGGFVKTPVLTADEGILKTAIKLQAQVQELEGNDEWPLDTFGKYLLSLAVQRTPIDRVILFGQRMDTELLKVAKQIIWQHVNSKCLFVGVLLQKTQYISPNLNPNDVTLSGCTDGILKFIAEHGASRLLEHVGQLDKLFKIPPPPGKTQAPSLRPLEENIPGPLGPISQHGWRNIRLFISSTFRDMHGERDLLMRSVLPALQARVFPHRISLHAIDLRWGITEEETRRNRQLEVCLGEVENSQLFVGILGSRYGYIPPSYDLPDHPHFHWTHEYPSGRSVTEMEVMQFLNRGQRSQPSAQALIYFRDPDFLSSVPDAWKPDFISESEEAAHRVSELKRYLHEQKEVTCRSYSCEWGGVAAGRPYTGGLEEFGQLVLQDVWSMIQKQHLQPGAQLEQPTSISEDDLIQTSFQQLKTPTSPARPRLLQDTVQQLLLPHGRLSLVTGQAGQGKTAFLASLVSALKVPDQPNEPPFVFFHFAAARPDQCLALNLLRRLCTHLRQKLGELSALPSTYRGLVWELQQKLLLKFAQSLQPAQTLVLIIDGADKLVDRNGQLISDWIPKSLPRRVHLVLSVSSDSGLGETLQQSQGAYVVALGSLVPSSRAQLVREELALYGKRLEESPFNNQMRLLLAKQGSSLPLYLHLVTDYLRLFTLYEQVSERLRTLPATLPLLLQHILSTLEQEHGHDVLPQALTALEVTRSGLTVDQLHAILSTWLILPKETKSWEEVLAASHSGNPFPLCPFAYLVQSLRSLLGEGPVERPGARLCLSDGPLRTTIKRRYGKRLGLEKTAHVLIAAHLWKTCDPDASGTFRSCPPEALKDLPYHLLQSGNHGLLAEFLTNLHVVAAYLEVGLVPDLLEAHVLYASSKPEANQKLPAADVAVFHTFLRQQASLLTQYPLLLLQQAASQPEESPVCCQAPLLTQRWHDQFTLKWINKPQTLKGQQSLSLTMSSSPTAVAFSPNGQRAAVGTASGTIYLLNLKTWQEEKAVVSGCDGISSFAFLSDTALFLTTFDGHLELWDLQHGCWVFQTKAHQYQITGCCLSPDRRLLATVCLGGYLKLWDTVRGQLAFQYTHPKSLNCVAFHPEGQVVATGSWAGSITFFQADGLKVTKELGAPGPSVCSLAFNKPGKIVAVGRIDGTVELWAWQEGARLAAFPAQCGCVSAVLFLHAGDRFLTAGEDGKAQLWSGFLGRPRGCLGSLPLSPALSVALNPDGDQVAVGYREDGINIYKISSGSQGPQHQELNVAVSALVWLSPSVLVSGAEDGSLHGWMFKGDSLHSLWLLSRYQKPVLGLAASRELMAAASEDFTVRLWPRQLLTQPHVHAVELPCCAELRGHEGPVCCCSFSPDGGILATAGRDRNLLCWDMKIAQAPLLIHTFSSCHRDWITGCAWTKDNILVSCSSDGSVGLWNPEAGQQLGQFSGHQSAVSAVVAVEEHIVSVSRDGTLKVWDHQGVELTSIPAHSGPISQCAAALEPRPGGQPGSELLVVTVGLDGATKLWHPLLVCQIRTLQGHSGPVTAAAASEASGLLLTSDDSSVQLWQIPKEADDSYKPRSSVAITAVAWAPDGSMVVSGNEAGELTLWQQAKAVATAQAPGRVSHLIWYSANSFFVLSANENVSEWQVGLRKGSTSTSSSLHLKRVLQEDWGVLTGLGLAPDGQSLILMKEDVELLEMKPGSIPSSICRRYGVHSSILCTSKEYGLFYLQQGDSGLLSILEQKESGEFEEILDFNLNLNNPNGSPVSITQAKPESESSLLCATSDGMLWNLSECTSEGEWIVDNIWQKKAKKPKTQTLETELSPHSELDFSIDCWIDPTNLKAQQCKKIHLGSVTALHVLPGLLVTASKDRDVKLWERPSMQLLGLFRCEGPVSCLEPWMEPSSPLQLAVGDTQGNLYFLSWE", 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"data/traits/function/pathway/go/mitochondrial-mrna-3-end-processing-go0090616.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090616", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitochondrial-mrna-3-end-processing-go0090616.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-trna-processing-go2000236.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000236", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-trna-processing-go2000236.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-angel-homolog-2-n-terminal-ipr045816.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045816", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-angel-homolog-2-n-terminal-ipr045816.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/angel2-n-pf19339.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19339", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/angel2-n-pf19339.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/exo-endo-phos-pf03372.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/exo-endo-phos-pf03372.yaml" } ], "pfam_ids": [ "PF03372", "PF19339" ], "protein_name": "RNA 2',3'-cyclic phosphatase ANGEL2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAWRCVRKGYGHCVVGRGRYPMFPHHSRSLGRDWTTPWENLQRCCWNRHISSCMRWPGHYSRAPYPYFSSRHFSLNWRPPCLFESRTQFQYCNWRPDNLSQTSLIHLSSYVMNAEGDEPSSKRRKHQGVIKRNWEYICSHDKEKTKILGDKNVDPKCEDSENKFDFSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGAEIRPSLESLGYHCEYKMRTGRKPDGCAICFKHSKFSLLSVNPVEFFRPDISLLDRDNVGLVLLLQPKIPYAACPAICVANTHLLYNPRRGDIKLTQLAMLLAEISSVAHQKDGSFCPIVMCGDFNSVPGSPLYSFIKEGKLNYEGLPIGKVSGQEQSSRGQRILSIPIWPPNLGISQNCVYEVQQVPKVEKTDSDLTQTQLKQTEVLVTAEKLSSNLQHHFSLSSVYSHYFPDTGIPEVTTCHSRSAITVDYIFYSAEKEDVAGHPGAEVALVGGLKLLARLSLLTEQDLWTVNGLPNENNSSDHLPLLAKFRLEL", "sequence_length": 544, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3d9cfec6505b0160c59619546ef367a969199d5c648cf00d19d0ca014f7cb74e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5VTE6.json", "taxon_id": "9606", "uniprot_accession": "Q5VTE6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/rna-2-3-cyclic-phosphatase-activity-go0160272.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160272", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/rna-2-3-cyclic-phosphatase-activity-go0160272.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/rna-2-phosphatase-activity-go0160273.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0160273", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/rna-2-phosphatase-activity-go0160273.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mitochondrial-mrna-3-end-processing-go0090616.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090616", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitochondrial-mrna-3-end-processing-go0090616.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-trna-processing-go2000236.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000236", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-trna-processing-go2000236.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/protein-angel-homolog-2-n-terminal-ipr045816.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045816", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/protein-angel-homolog-2-n-terminal-ipr045816.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/angel2-n-pf19339.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19339", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/angel2-n-pf19339.yaml" } ], "pfam_ids": [ "PF03372", "PF19339" ], "protein_name": "RNA 2',3'-cyclic phosphatase ANGEL2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METWRCVRRGYGRCVAGRGRYSMFPYPLKSLGRDWTTPWEDLQKYCWRRHISSCLRWPGHYSRAPYPYFSSRHFSLNCRPPFLFESGTQFQYYNWRSDHLSNASLIHLSRHVMTSDRDEPLSKRRKHQGTIKRNWEYLCSHNKENTKDLEDRNVDSTCEDREDKFDFSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGTEIRPSLESLGYHCEYKMKTGRKPDGCAICFKHSRFSLLSVNPVEFCRRDIPLLDRDNIGLVLLLQPKIPRAASPSICIANTHLLYNPRRGDIKLTQLAMLLAEIANVTHRKDGSSCPIVMCGDFNSVPGSPLYSFIKEGKLNYEGLAIGKVSGQEQSSRGQRILSIPIWPPNLGISQNCVYEAQQVPKVEKTDSDVTQAQQEKAEVPVSADKVSSHLQHGFSLSSVYSHYVPDTGVPEVTTCHSRSAITVDYIFYTAKKENTAQGPGAEVALVGGLKLLARLSLLTEQDLWTVNGLPNEHNSSDHLPLLAKFRLEL", "sequence_length": 544, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3759eef321b94fee6f2698585aaf8785fba551b8e9fa1f0f329d506fa604305c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8K1C0.json", "taxon_id": "10090", "uniprot_accession": "Q8K1C0", "uniprot_release": "2026_03" } ], "pfam_id": "PF19339", "short_name": "ANGEL2_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cryptococcus neoformans (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ham1-c-pf14613.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14613", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ham1-c-pf14613.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ham1-n-pf19343.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19343", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ham1-n-pf19343.yaml" } ], "pfam_ids": [ "PF14613", "PF19343" ], "protein_name": "Putative cell signaling protein HAM1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSVAATKSEISHNPGKMSVTSAVSGEKVEGDVQSRMKLFGAIQAFRDGRMPDNEQIGSVLEYAIGHSPVDLQKLSPEGRVLIEDFRDTLETLRMIVHEKNSDELFQNAVWSSYHGDVSKAKQDGVIPVSNEQAKQDGKTAASHIRVLITLFLTNSEARKLLKDFGIVGRDIFATAATKAADKSRPSQEKLDSVDQEAPSHEWIGADGKRLGPNETPDIQIKGPGGTQARYHPRDDPRDAQLVDDKGKTRSAGEAYNQAQEAKSDAQSKAQDLKSSARDYKETGKQQARSHAQDVAGNRDPNASLSEQKEQVKGAAYDKRDAANAQADQNLPDPNDEGNQEKARGKAAALRDRIPEEHRQKAADYIQKSKNFVNDELPEERRDQFIYRLKKVVVECQGHKDYQEAMTWLLDTLENYRGHAKHVANKGTESAQTVANDPAVGDSTIQFRTLLERFANGKSLDNVFSALDQIYTDVQNDSELREWFTTFNDYMHRVLLEPGYILDEDSDREARQLRESGRRFFQDKYKAHQELLFDELQVWLTAFGEDPLNVRLGDDIKRFCKDLLFNHEGNLTFKPKLWNDVRQVLLPMLLKQVSYVPIPRAEYSDNSIDLVIEDLILSGPNLFPNLVHIESFNSFSFSPYPKLNKTMDNQHHKFRLSLSQIQADIRDVAFAFRRKSGWPKLSDHGLADVVLAGKGISVDVELESIENRRDTVFKTNFIHVNIDTLKFSIRNSKHDLLYKFIKSTATGLIKRAITAAVQNAMHTALGHLDEQLVEVRNRVDEAKQSDETTRTQALKDLYSRKKESAQEKKAAADEKTGTFKIITDRDSQLNPELTHDGGKSWAKRAFKVEDAARTGKEWRSPAFNLIDPAHPAVTGQHHPAVQNADVESEKLKQRAEAAAPGVAAGTKRM", "sequence_length": 908, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "95369f3bddb983991db3124fde2e43e520f1dbce8c8f8bea3aea2b1afa6df494", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/J9VVE7.json", "taxon_id": "235443", "uniprot_accession": "J9VVE7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ham1-c-pf14613.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14613", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ham1-c-pf14613.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/brex-pgly-5th-pf26381.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/brex-pgly-6th-pf26382.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26382", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/brex-pgly-6th-pf26382.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/brxc-pgly-n-pf19557.yaml", "qualification_status": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/brex-brxc-helical-pf25792.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25792", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/brex-brxc-helical-pf25792.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/brxc-7th-pf27212.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27212", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/brxc-7th-pf27212.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/brxc-ab-pf27153.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF27153", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/brxc-ab-pf27153.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/brxc-pgly-n-pf19557.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19557", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/brxc-pgly-n-pf19557.yaml" } ], "pfam_ids": [ "PF19557", "PF25791", "PF25792", "PF25796", "PF27153", "PF27212" ], "protein_name": "Probable ATP-binding protein BrxC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"sequence_length": 1192, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "927a3deac8cbdb0551ede10cfe7921623781f6e114cb654dc9c5f51ceff23012", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DUF2.json", "taxon_id": "451708", "uniprot_accession": "P0DUF2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O9:H4 (strain HS)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/brex-brxc-4th-pf25796.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25796", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/brex-brxc-4th-pf25796.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/brex-brxc-helical-pf25792.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25792", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/brex-brxc-helical-pf25792.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/brxc-pgly-n-pf19557.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19557", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/brxc-pgly-n-pf19557.yaml" } ], "pfam_ids": [ "PF19557", "PF25791", "PF25792", "PF25796" ], "protein_name": "Probable ATP-binding protein BrxC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIEQIFKKPLKRNINGVVKAEQTDDASAYIELDEYVITRELENHLRHFFESYVPATGPERIRMENKIGVWVSGFFGSGKSHFIKILSYLLSNRKVTHNGTERNAYSFFEEKIKDALFLADINKAVHYPTEVILFNIDSRANVDDKEDAILKVFLKVFNERIGYCADFPHIAHLERELDKRGQYETFKAAFADINGSRWEDERDAYYFISDDMAQALSQATQQSLEASRQWVEQLDKNFPLDINNFCQWVKEWLDDNGKNILFMVDEVGQFIGKNTQMMLKLQTITENLGVICGGRAWVIVTSQADINAAIGGMSSRDGQDFSKIQGRFSTRLQLSSSNTSEVIQKRLLVKTDEAKAALAKVWQEKGDILRNQLAFDTTTTTALRPFTSEEEFVDNYPFVPWHYQILQKVFESIRTKGAAGKQLAMGERSQLEAFQTAAQQISAQGLDSLVPFWRFYAAIESFLEPAVSRTITQACQNGILDEFDGNLLKTLFLIRYVETLKSTLDNLVTLSIDRIDADKVELRRRVEKSLNTLERLMLIARVEDKYVFLTNEEKEIENEIRNVDVDFSAINKKLASIIFDDILKSRKYRYPANKQDFDISRFLNGHPLDGAVLNDLVVKILTPKDPTYSFYNSDATCRPYTSEGDGCILIRLPEEGRTWSDIDLVVQTEKFLKDNAGQRPEQATLLSEKARENSNREKLLRVQLESLLAEADVWAIGERLPKKSSTPSNIVDEACRYVIENTFGKLKMLRPFNGDISREIHALLTVENDTELDLGNLEESNPDAMREVETWISMNIEYNKPVYLRDILNHFARRPYGWPEDEVKLLVARLACKGKFSFSQQNNNVERKQAWELFNNSRRHSELRLHKVRRHDEAQVRKAAQTMADIAQQPFNEREEPALVEHIRQVFEEWKQELNVFRAKAEGGNNPGKNEIESGLRLLNAILNEKEDFALIEKVSSLKDELLDFSEDREDLVDFYRKQFATWQKLGAALNGSFKSNRSALEKDAAAVKALGELESIWQMPEPYKHLNRITLLIEQVQNVNHQLVEQHRQHALERIDARIEESRQRLLEAHATSELQNSVLLPMQKARKRAEVSQSIPEILAEQQETKALQMDADKKINLWIDELRKKQEAQLRAANEAKRAAESEQTYVVVEKPVIQPVPKKTHLVNVASEMRNATGGEVLETTEQVEKALDTLRTTLLAAIKAGDRIRLQ", "sequence_length": 1213, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99bb92e6e67b4669c0c7433045712fc93d64ac00a3bc48179487f52d48a2904c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DUF8.json", "taxon_id": "331112", "uniprot_accession": "P0DUF8", "uniprot_release": "2026_03" } ], "pfam_id": "PF19557", "short_name": "BrxC-PglY_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19558", "short_name": "DUF6080", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf6081-pf19559.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19559", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf6081-pf19559.yaml" } ], "pfam_ids": [ "PF19559" ], "protein_name": "Uncharacterized protein L829", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSNRFDSKPKCRCVAKIDDNYENNCQSKYISKCEIPRNICQRKNIDFFYDFRLKYSDADFDYVFGNDGVVTQNFTGLTVNSVPFTQTVPIGNEHPKWLKFYKDAFPLYNDREVIFETEMSGVQVIDGNSIPEKMKPRIRNVDDDLRLASGALNVIDPNTWMVFDFFVTNTAIYAFYERLPFGKTSSTPSNTTSQFGNKSFHDKFTHNGSIHNGSIHNGSIHNGSHCNPNPDVPTDLGNYAAFSNAIWVARRSADDPLSQFSKLAIGIHKGKGLVTWYIDDIPVFTWDRIGYRMHDEYRMVDHGGIEGIVSPDSMRLGFGTFSLFDMNLPNDYDRGYVDPVVVLPDGPHREIARSALIQLDFAANYRETFPDPYTGLERPLADPAITFAYTLGETPDDNRAIKLFGQGAIIKLKYLRVYTRSPNAKPEFSRVNH", "sequence_length": 433, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c61f0413ba3469c2e8d33146869dde534a91fe42251727392fda3327398daac0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5UQI1.json", "taxon_id": "212035", "uniprot_accession": "Q5UQI1", "uniprot_release": "2026_03" } ], "pfam_id": "PF19559", "short_name": "DUF6081", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19560", "short_name": "DUF6082", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19561", "short_name": "DUF6083", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19562", "short_name": "DUF6084", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19563", "short_name": "DUF6085", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19564", "short_name": "DUF6086", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19565", "short_name": "DUF6087", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19570", "short_name": "DUF6088", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19573", "short_name": "DUF6089", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19578", "short_name": "DUF6090", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acinetobacter baumannii", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/adet1-2-pf19582.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19582", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/adet1-2-pf19582.yaml" } ], "pfam_ids": [ "PF19582" ], "protein_name": "Probable solute-binding protein AdeT1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFDPIGKSGDAFALAKDYALEAKNWGADLSLKAYVDERVAAEDLKVGKCDGAIISGLRGRQFNKYTGSLDAVGALTNMKTAINAYKLLSSPMAAKNMVVGPYEIAGLGTIGPAYLFVNDRSINTLAKAAGKKIGVFKYDEAQPKLVQHVGGQAVSVDVTNAGAKFNNHEIDIVPAPIVAFKPFELYKGLGEKGAIVRFPLTQISADFIIRKDQFPAGFGQKSRTWVASQLNRTFGIIAKYESDIPSKYWMDIPKNEQLNYMKMMREARIQLTKAGIYDPKMMNFLKKVRCKENPSNFECALNDE", "sequence_length": 304, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b26fa6e7894f8204e3d49be2d7baeb25f1001bdf234fa58d062f9167b4d7504c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C7F8K6.json", "taxon_id": "470", "uniprot_accession": "C7F8K6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acinetobacter baumannii", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/adet1-2-pf19582.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19582", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/adet1-2-pf19582.yaml" } ], "pfam_ids": [ "PF19582" ], "protein_name": "Probable solute-binding protein AdeT2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGSTSGIGLIPNNRTARNLLQLLNHPTIEKRLINKDYEAVGMIPVGTANMVMKTKKISKVAQLRGQRIGVLANNPPQQALVRSVGAQPVYVDLSNAIAQFQQNKIDIMPAPVYGLLPYNLQKDFGPDTQVINFPLAYFGVNIIIKPQAYPANFGRKIRAWFVQNSQLLTNRAIQWENHLPAYYWVDVSFYEKQSYDIMVAKIRNQYVRSGYYDAYFVELMKRLRCIDDPRYFECPMSR", "sequence_length": 238, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "486527eaa033a925b4cca21edff57704c8af86c8fa760b267226400e6301ad41", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C7F8K7.json", "taxon_id": "470", "uniprot_accession": "C7F8K7", "uniprot_release": "2026_03" } ], "pfam_id": "PF19582", "short_name": "AdeT1_2", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces noursei", "origins": [ { "cited_uniprot_accession": "Q8GED8", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/unclassified/albonoursin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:71609", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/unclassified/albonoursin.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf6092-pf19585.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19585", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf6092-pf19585.yaml" } ], "pfam_ids": [ "PF19585" ], "protein_name": "Protein AlbB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNPGETVLPPQLREEIALLAVYLLSSGRGLLEEPADYGIYRCTDGARRALQLLDEHGGSTARLTAVRERLDEVMFAPMGEDRDMGAILDDLCRQMADALPEIETP", "sequence_length": 105, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cadc33a0694f4759616b561aa2ca3aa3fd60235e36c9bc401e15eb7f8c3ada1b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8GED8.json", "taxon_id": "1971", "uniprot_accession": "Q8GED8", "uniprot_release": "2026_03" } ], "pfam_id": "PF19585", "short_name": "DUF6092", "status": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6259-pf19773.yaml" } ], "pfam_ids": [ "PF19773" ], "protein_name": "Putative glycoside hydrolase BT_3595", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MITGIISILCYLQCFGTLSASVTAKNENGNFVLKNKNVELVFANGKEFLFKEFRMDGMNILPVDGSTTHPWQLIYRGPNGENPTLMPRWGEYKGGEIQKTQDASTLIFTWQMVIDAGPTCPVRILVTLGKDAELPEWRIEAEMPEGWVITESEFPRIAVNRPEGAKGILPVGFGTEYTIGNEGQLQSRYPSCTGTMQLVLMHHKGGTVYFAAQDKGGSGKVFRMKSEGKSLVFIQNVTTSYAWTQNKKFCIPWETVMGFTQKGWQDAAVQWYRPFTFETLWGAKTISERPIAEWIKNADMWLRPGEVNAETMEAVRKAMKYYGKGVGLHWYYWHNHRFDTKYPEYFPEKAGFKEMIKETQELGGFITPYINGRLWDPATDSYKTLNGKDASCRKADGTLYTEVYSSKVLNTVTCPASYIWRDVLKGVNKQILTELKTNGVYMDQIGCANSEPCYATNHGHAPGGGDWWPFAYRSLLTEMRTNLYKENQAMTTEENAECYIDLFDMMLVVNSPHNSYTKMVPLFPLIYSDRCIYSGYTYIPWRITDGSLNFMSMRSLLWGSQLGWVEPSLLMRPDAKREAKFLKNLTDFRRQQHDLFLGGRFIQEIIPTGDNPTQEIPNYEITSVVLAAEWASVSGEHVYLIVNMSEQEHKVTLPNKKQITVKALDAIRISK", "sequence_length": 671, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cb04d3bf333f7b3f5ab969c149d0025e0cc02400fc3280c819eb16a4f473c81b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8A1R4.json", "taxon_id": "226186", "uniprot_accession": "Q8A1R4", "uniprot_release": "2026_03" } ], "pfam_id": "PF19773", "short_name": "DUF6259", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19774", "short_name": "DUF6260", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19775", "short_name": "DUF6261", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain Mu50 / ATCC 700699)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf6262-pf19776.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19776", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf6262-pf19776.yaml" } ], "pfam_ids": [ "PF19776" ], "protein_name": "Transposase for transposon Tn554", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKQVRNTTEIVRLAKQKSKKTREKVDKAISKFSIEGKVINFNSIAKEANVSKSWLYKEHDIRQRIESLRERQITANVVSKPKKSSRSEEILIKTLKRRVMELEKENKKLQNQIQKLYGDLYNKE", "sequence_length": 125, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c81c9ed3b09d89a0fada9105cdc2a026c9045fe4f5d00b4dadab8bf5b6bab3d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A047.json", "taxon_id": "158878", "uniprot_accession": "P0A047", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus (strain N315)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf6262-pf19776.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19776", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf6262-pf19776.yaml" } ], "pfam_ids": [ "PF19776" ], "protein_name": "Transposase for transposon Tn554", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKQVRNTTEIVRLAKQKSKKTREKVDKAISKFSIEGKVINFNSIAKEANVSKSWLYKEHDIRQRIESLRERQITANVVSKPKKSSRSEEILIKTLKRRVMELEKENKKLQNQIQKLYGDLYNKE", "sequence_length": 125, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c81c9ed3b09d89a0fada9105cdc2a026c9045fe4f5d00b4dadab8bf5b6bab3d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A048.json", "taxon_id": "158879", "uniprot_accession": "P0A048", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Staphylococcus aureus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf6262-pf19776.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19776", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf6262-pf19776.yaml" } ], "pfam_ids": [ "PF19776" ], "protein_name": "Transposase for transposon Tn554", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDKQVRNTTEIVRLAKQKSKKTREKVDKAISKFSIEGKVINFNSIAKEANVSKSWLYKEHDIRQRIESLRERQITANVVSKPKKSSRSEEILIKTLKRRVMELEKENKKLQNQIQKLYGDLYNKE", "sequence_length": 125, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1c81c9ed3b09d89a0fada9105cdc2a026c9045fe4f5d00b4dadab8bf5b6bab3d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0A049.json", "taxon_id": "1280", "uniprot_accession": "P0A049", "uniprot_release": "2026_03" } ], "pfam_id": "PF19776", "short_name": "DUF6262", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19777", "short_name": "DUF6263", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19779", "short_name": "DUF6264", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19780", "short_name": "DUF6265", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19781", "short_name": "DUF6266", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19782", "short_name": "DUF6267", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19783", "short_name": "DUF6268", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19784", "short_name": "DUF6269", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19786", "short_name": "DUF6270", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19787", "short_name": "DUF6271", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19788", "short_name": "DUF6272", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19789", "short_name": "DUF6273", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19790", "short_name": "DUF6274", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19791", "short_name": "DUF6275", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19792", "short_name": "DUF6276", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19793", "short_name": "DUF6277", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19794", "short_name": "DUF6278", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19795", "short_name": "DUF6279", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19796", "short_name": "DUF6280", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19797", "short_name": "DUF6281", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19799", "short_name": "DUF6282", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19800", "short_name": "DUF6283", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19801", "short_name": "DUF6284", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19802", "short_name": "DUF6285", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19803", "short_name": "DUF6286", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19804", "short_name": "DUF6287", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19805", "short_name": "DUF6288", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19806", "short_name": "DUF6289", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19807", "short_name": "DUF6290", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19808", "short_name": "DUF6291", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19809", "short_name": "DUF6292", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hfx-2341-n-pf19810.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19810", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hfx-2341-n-pf19810.yaml" } ], "pfam_ids": [ "PF19810", "PF22665" ], "protein_name": "Uncharacterized protein AF_1987", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVSFVHVISVESNTAEIVDSVKMSGHPIHKAYLIFDSEESKKYVDEVKGTLSSLVEVEVLELKSDGVYEAVVDILRTVRKEVDAGNTVLFNITDSDKLTCLACFISAQISESKIYTKKGDSVIEIPTPPIKKVNEDKLEILRALEREGGSVDSINKLIELVEGKLEEQKKYMAQRARMSYHLNGLEEDGLVVTERKGKNLSIFLTELGKAFVAMFG", "sequence_length": 216, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3d2f48571fd229c31c4c9f62629d0fd601c24aa0a4a147ee58d0c66639eb9d99", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O28292.json", "taxon_id": "224325", "uniprot_accession": "O28292", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/hfx-2341-like-n-terminal-ipr046260.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046260", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/hfx-2341-like-n-terminal-ipr046260.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hfx-2341-n-pf19810.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19810", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hfx-2341-n-pf19810.yaml" } ], "pfam_ids": [ "PF19810" ], "protein_name": "Uncharacterized protein MJ1513", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKMTNDLEKIRGGVHIAVQGYEVDRITEVPIMRRAEKVYLICKPGNNDSKRGKAFKNVIIKKFEEKRVNYEIVEADLFDLDDIVKKMKLIIAHERKEFGDVKFYINVSSGSTIGCIAGITCAMILNKENSRIIPYYVMPEKSLDGLSEKEKEELKKEYESKYNCPYLPRSFGVRGVKLIYPFEVTLPREELLIFLKFIGRAGNRGLTIKELSILTKEEFLNVDLNDNESIKELIKAVERKESVSNSSVKKMKNLVRELKEVVGSDVDDLKKIITWRKKCRSSVSSTGQSDLVWVNKNVVEKLLELELIEKPEKIGKSKYIRISEKGKMLLNYVG", "sequence_length": 335, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f750f3a2b7030a6d8fa0eb3fcc2c362b2ca6646ef7668a62a218e745c17e3b3f", 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"sequence_length": 1217, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "52638c327528d2ca5d10075facebae2813a47f6197278d65aa271fc2199aa324", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P54602.json", "taxon_id": "224308", "uniprot_accession": "P54602", "uniprot_release": "2026_03" } ], "pfam_id": "PF19886", "short_name": "DUF6359", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19887", "short_name": "DUF6360", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19888", "short_name": "DUF6361", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19889", "short_name": "DUF6362", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/hypothetical-patatin-similar-to-yjju-protein-of-escherichia-coli-patat-cd07208.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd07208", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/hypothetical-patatin-similar-to-yjju-protein-of-escherichia-coli-patat-cd07208.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf6363-ipr045943.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR045943", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf6363-ipr045943.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6363-pf19890.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19890", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6363-pf19890.yaml" } ], "pfam_ids": [ "PF01734", "PF19890" ], "protein_name": "Uncharacterized protein YjjU", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGQRIPVTLGNIAPLSLRPFQPGRIALVCEGGGQRGIFTAGVLDEFMRAQFNPFDLYLGTSAGAQNLSAFICNQPGYARKVIMRYTTKREFFDPLRFVRGGNLIDLDWLVEATASQMPLQMDTAARLFDSGKSFYMCACRQDDYAPNYFLPTKQNWLDVIRASSAIPGFYRSGVSLEGINYLDGGISDAIPVKEAARQGAKTLVVIRTVPSQMYYTPQWFKRMERWLGDSSLQPLVNLVQHHETSYRDIQQFIEKPPGKLRIFEIYPPKPLHSIALGSRIPALREDYKLGRLCGRYFLATVGKLLTEKAPLTRHLVPVVTPESIVIPPAPVANDTLVAEVSDAPQANDPTFNNEDLA", "sequence_length": 357, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d33ae8abe75bc6f79063483ff968c2016d7ab9c98b997c2ca6df98eda3e4d1c7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P39407.json", "taxon_id": "83333", "uniprot_accession": "P39407", "uniprot_release": "2026_03" } ], "pfam_id": "PF19890", "short_name": "DUF6363", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19891", "short_name": "DUF6364", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19892", "short_name": "DUF6365", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19893", "short_name": "DUF6366", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19894", "short_name": "DUF6367", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19895", "short_name": "DUF6368", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19896", "short_name": "DUF6369", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19897", "short_name": "DUF6370", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19898", "short_name": "DUF6371", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19899", "short_name": "DUF6372", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19900", "short_name": "DUF6373", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19901", "short_name": "DUF6374", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19902", "short_name": "DUF6375", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf6376-pf19903.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19903", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf6376-pf19903.yaml" } ], "pfam_ids": [ "PF19903" ], "protein_name": "Uncharacterized lipoprotein YybP", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIILTVLAGVGLLSAGGCGMLDQVNDGLNYTSEAAGYVEKVKTFAEEAPELAEKAVNDTEAKEKLEAQLESIQKAAADFNELTPPDAAAEIHRTIQEHNETLQKSAEDVLKQAEEGKVSLKELEQSDLVQNAKQITDVMGQIEKLGE", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d47e06ba076204ba84f9512870936542fa1388dd7c1bafdf3ca7340522bbc8fe", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P37488.json", "taxon_id": "224308", "uniprot_accession": "P37488", "uniprot_release": "2026_03" } ], "pfam_id": "PF19903", "short_name": "DUF6376", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-susr-pf28559.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF28559", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-susr-pf28559.yaml" } ], "pfam_ids": [ "PF19904", "PF28559" ], "protein_name": "Starch utilization system regulator SusR", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLVLNRLLIISFLSLLPLSKNTSENENCYGDIFRFYYYNHYICHILKKHLMRNLTYYLLFLLFVYPLSLSAKHTDINKAALKKLDDIISKKETYQIRREKDITDLKVQLAHSTDPARNYELYASLFGAYLHYQADSALHYINRQMEILPQLNRPDLEYEIVINRATVMGVMGMYIEAMEQLEKIDPKKLNEWTLLSYYQTYRACYGWLADYTTNKTEKEKYLKKTDLYRDSIIAAMPPEENKTIVMAERCIVTGKADTAIGMLNDALKDMEDERQKVYIYYTLSEAYSMKKDVEKEVYYLILTAIADLESSVREYASLQKLAHLMYELGDIDRAYKYLSCSMEDAVACNARLRFMEVTEFFPIIDKAYKLKEERERAVSRAMLISVSLLSLFLLIAIFYLYRWMKKISVMRRNLSLANKQMSAVNKELEQTGKIKEVYIARYLDRCVNYLDKLETYRRSLAKLAMSSRIDDLFKAIKSEQFIRDERNEFYNEFDKSFLKLFPHFITSFNNLLVEEARVYPKSDELLTTELRIFALIRLGVVDSNKIAHFLGYSLATIYNYRSRMRNKAAGDKDRFEQDVMNL", "sequence_length": 582, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b4ababb5006124b496a649e0e21c12ee1401aaff195079b0479aee1d2a4c18d3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8A1F9.json", "taxon_id": "226186", "uniprot_accession": "Q8A1F9", "uniprot_release": "2026_03" } ], "pfam_id": "PF19904", "short_name": "SusR_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium phage D29", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6378-pf19905.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19905", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6378-pf19905.yaml" } ], "pfam_ids": [ "PF19905" ], "protein_name": "Gene 55 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSESILEEAQRLIHGERNKNYGHPRENFKDIALLFSGYLEKEISDIDVANLMILMKIARVKGTGYHRDSFTDMAGYAGCVERIYEEPVEGEPRQWDTLADVPKDVKTVRSAGNAFWSRYPDYNERLWGHRDGFKLDHAKISEGPFVEVLGE", "sequence_length": 151, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8208a06762976e0d57a8db37ce56dee03d97643505339156ee6518b7f1bc6d75", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O64246.json", "taxon_id": "28369", "uniprot_accession": "O64246", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium phage L5", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6378-pf19905.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19905", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6378-pf19905.yaml" } ], "pfam_ids": [ "PF19905" ], "protein_name": "Gene 55 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSILTTAEEIINGQRAQDYGDAKENHERIATLWGAYKRGVEFTPEDVAVMMILLKIARFMENGYHQDTVVDIAGYAGVLEKMQLPEDERYPKGPRQWDTLLDVPADVKTVTNATGVKWIYYPNGLHHTKVGKRRWSGGNASSHEERMRGPFTEVAE", "sequence_length": 156, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b4709f75f1dc063da12b664ff49e4514e0b19b7a6a202dc53f5585327b3f16ff", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q05265.json", "taxon_id": "31757", "uniprot_accession": "Q05265", "uniprot_release": "2026_03" } ], "pfam_id": "PF19905", "short_name": "DUF6378", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arthrobacter globiformis (strain ATCC 8010 / DSM 20124 / JCM 1332 / NBRC 12137 / NCIMB 8907 / NRRL B-2979 / 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cgdb-pf19906.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19906", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cgdb-pf19906.yaml" } ], "pfam_ids": [ "PF19906" ], "protein_name": "C-glycoside deglycosidase beta subunit", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIADRIIEHGTLITRDGRAAVEVRIPWYRALPGSCIAGAALTVDGVAAPEDTLRWTMNNRTFSFEELVDETGEWWFPLDSAVLSGDLPVWDDQAEHEVRVDLKLCIPYIITDHGVLHIEEHDTKTMKVAQQ", "sequence_length": 131, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "24d307528a59c267b0e66cd8b9cf097fe5c3e2370e6865e39730dc63e5a6430f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/H0QPM1.json", "taxon_id": "1077972", "uniprot_accession": "H0QPM1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Eubacterium cellulosolvens (strain ATCC 43171 / JCM 9499 / 6)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cgdb-pf19906.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19906", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cgdb-pf19906.yaml" } ], "pfam_ids": [ "PF19906" ], "protein_name": "C-glycoside deglycosidase beta subunit", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKQVIQSVGFRNIKNGNGEITGFQFKVKLPYYRGVFLSQIRPGTLFVDGQKIEKDQITWTINGEEYTNQEMRGDFKTHWATTKPAVLKVKMPGGLAQGYHDLKYGFCFTSSYMPPIIQDGLDPDKESMVYMPEFGHHVNERRLLIV", "sequence_length": 147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5cf242ba09b5209efd97f20b07e1922d34780fb1f81966f7b3cdf331a633ca05", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/I5AX49.json", "taxon_id": "633697", "uniprot_accession": "I5AX49", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Microbacterium sp", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cgdb-pf19906.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF19906", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cgdb-pf19906.yaml" } ], "pfam_ids": [ "PF19906" ], "protein_name": "3'-dehydrocarminate deglycosidase beta subunit", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFRERIIVQDSLVADESGSAFRIRLPWYRALPLSTIEELSVTVDGTAFDPARLRIAVNDGEWALAEAQLRTDDVWFVLDDATVRLPGLVLDAGAHEVQATLSMRIPYLPVAGKPLSMAETDQKRMDVKELTA", "sequence_length": 132, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "534eb0ec2eeb0a30c38bd2df07eff3a64899165b7359fbccd40363fa2bb4b139", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DXE6.json", "taxon_id": "51671", "uniprot_accession": "P0DXE6", "uniprot_release": "2026_03" } ], "pfam_id": "PF19906", "short_name": "CGDB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19907", "short_name": "DUF6380", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19908", "short_name": "DUF6381", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19909", "short_name": "DUF6382", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF19910", "short_name": "DUF6383", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": 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"canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/profile/pterin-binding.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS50972", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/pterin-binding.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q57571", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00809", "PF14251", "PF20123" ], "protein_name": "Uncharacterized protein MJ0107", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "04a647a93af202919e856b95ffd85aa8cc28f2df4ea181eec7111655cffc6d00", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MREIMKILIITGKLAERKVKDAVKKYDFIDVHVANISVAAFLTPNLIIKEIKKLENKLGKKLKDIYDFVLVTGLIRHDLKNVEEETGIKCFKSTREASDIPILIENLDKIKLSTKEYADLQLLEIIRKKCEEEIKKAEEQELGEGDIKIGKLKVGDKFPMRVLGEIVHAPWLKEKELEEKIIYYLESGADMIDLGMVSNENNADKIKDMLKIARDLTDNPISVDTLNTKELIEAINLGADMILSVDAGNLDELIPYLKDSETAVVVLPTNYKTNYVPETIEGKIKSLEENIKKLIDAGIEKIVADPILEPINNAGCSFIESVIACREFKKRNKLPLFFGVGNVTELFDADSNGVNALLAAIGAEIGANILFTPEASAKCKFSIKELKIASKMMFLAKKRNSLPKDIGYNLINYKDKRFEEEITFNSYNIPIIKAEEDERQILDEGSFKIEIDRKNKEIVAIYFNKRREPVLIIRGKKPKEIYETAIRLNLIKKLDHASYFGRELAKAEIALRIGKKYNQDFDLFL", "sequence_length": 525, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "04a647a93af202919e856b95ffd85aa8cc28f2df4ea181eec7111655cffc6d00", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q57571.json", "taxon_id": "243232", "uniprot_accession": "Q57571", "uniprot_release": "2026_03" } ], "pfam_id": "PF20123", "short_name": "DUF6513", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20124", "short_name": "DUF6514", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20125", "short_name": "DUF6515", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20126", "short_name": "TumE", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20127", "short_name": "DUF6517", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20128", "short_name": "DUF6518", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20129", "short_name": "DUF6519", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20130", "short_name": "DUF6520", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20131", "short_name": "MC3", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20132", "short_name": "DUF6522", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/hhl1-like-pf20133.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20133", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/hhl1-like-pf20133.yaml" } ], "pfam_ids": [ "PF20133" ], "protein_name": "Protein HHL1, chloroplastic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEVSMSLNALTRLPLKNTGRFEEVGLARHSLFSSRTACRETAVQQRRMVFVVEAKGKKGMAARQYQRTPPPMPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLGKYIYKDTIARNIAAVIYRDEKEIQKTAIKQHRVLRTATEFRYGYKLVENGNMRAALSTSDVIELPTQDQLKTVFDKVKDYFGDAKESFGKLSSLNPGSDEKTEETSDEKAKA", "sequence_length": 231, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "78f161e8df66bfe33e424a77102b56a56ce00e6771183662dbae5d899c16742d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LDL0.json", "taxon_id": "3702", "uniprot_accession": "Q8LDL0", "uniprot_release": "2026_03" } ], "pfam_id": "PF20133", "short_name": "HHL1-like", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20134", "short_name": "DUF6524", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20135", "short_name": "DUF6525", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20136", "short_name": "DUF6526", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20137", "short_name": "BubE", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20138", "short_name": "DUF6528", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20139", "short_name": "DUF6529", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20140", "short_name": "DUF6530", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 8, "discovery_scanned": true, "example_count": 8, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis subsp. natto (strain BEST195)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm96-pf24517.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24517", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm96-pf24517.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6531-pf20148.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20148", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6531-pf20148.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/rhs-repeat-pf05593.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05593", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rhs-repeat-pf05593.yaml" } ], "pfam_ids": [ "PF02018", "PF05593", "PF20148", "PF24517", "PF25023" ], "protein_name": "tRNA(Glu)-specific nuclease WapA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEYYFYYKRREKMKKRKRRNFKRFIAAFLVLALIISLVPADVLAKTTEEENGNRIVADDPEETLQKEQTEEAVPFDPKDINKEGEITSERTENTKLYYEGDGVYKQEVYLDPIHTKETPDADWEDISPELKESTSKQVETENAILNSDFQKQMKNGLYATFEHNDHKVTYSLVEAKAPNKTSLTPKDTSADYKTDSNEIVYPDVFPNIDLQTFTFNENIKEDLVLHQYDGYNTFTFQLKTDLQAKEQEDGSIDFSDEKGKVVFSVPKPFMTDSKLDELSGEVERSDKVSYKLEKNEEGYLLHLTADENWLKDPERVYPVSIDPSTSLSVSSDTFVMSAYPTTNYSASSQKWDANLKAYVLKTGYYDKTTGTNYAFMKFNNLKPIQNMTVTKATLKTYVAHSYYGTKATGLWLDTVNSNYDNAKVTWNTKPASKNIGKADVHKGQWASYDVTAAVKSWNSGGANYGFKLHTNGNGKEYWKKLISSANSANKPYIEVTYTIPKGNTPTIKAYHNGDSTGYFDISWKKVEGAKGYKVWIYNGKEYQAISAGNVTSWSTKGKKIWPTSAEIASKRYKLHLDGKDGAELALDPSPVYKNSGGSYATSKNYWIGVSAIFDQGEGAMSAPAKPVIPNVGKAQAPSAKGYNNGNATGYFDLSWKAVSGATGYKVQVFNGKGFETLDLGNQTSWTTKGKKIWPTSAEIKAGKYALHLKDGSGAELPINPGPTYKNAGGDGAKKNYSFKIIAYNKDGEAIASPAANPALPDIARPKNLTGYLYTNTKSSQTGYVNLIWEKVQNAKGYKVNIYNGKEYQSFDVGDADHWTTQNKNIWPTSEEIKAGSYKLHTDGKGGELALDPSPVYNNANGNYKGKKNYSFTLVAYDANGETIPTAPFNPTFHEGAEFLGTEEYWSIIDIPSGQLNGATGNVIVNEEDLSIDGRGPGLGLSRTYNSLDSSDHLFGQGWYADAETSVISTDGGAMYIDEDATTHRFTKKADGTYQPPTGVYLELTETADQFILKTKDQTNAYFNKKGGKLQKVVDGHNNATVYTYNDKNQLTAITDASGRKLTFTYDENGHVTSITGPKNKKVTYSYENDLLKKVTDTDGTVTSYDYDGEGRLVKQYSANSTEAKPVFTEYQYSGHRLEKAINAKKETYVYSYDADKKTLLMTQPNGRKVQYGYNEAGNPIQVIDDAEGLKITTNTKYEGNNVVEDVDPNDVGTGKATESYQYDKDGNVTSVKDAYGTETYEYNKNNDVTKMKDTEGNVTDIAYDGLDAVSETDQSGKSSSAAVYDKYGNQIQSSKDLSASTNILKDGSFEAQKSGWNLTASKDSGKISIITDKSGVLSGSKALEILSQSTSAGTDHGFSSATQTVELEPNTTYTLSGKIKTDLAKTRAYFNIDLRDKDQKRIQWIHNEYSALAGKNDWTKRQITFTTPANAGKAVVYMEVDHNDKDGKGKAWFDEVQLEKGEVSSSYNPVQNSSFTSATENWNVSGASVDSEEGFNDDVSLKAARTSASQAGSVTKQTVVLGQSANDKPVYLTLTGMSKASSVKFTDEKDYSLQANVTYADGSTGVYNAKFPSGTQEWNRAAVVIPKTKPINKVDISILFQKSATGTVWFDDIRLIEGSLLTKSTYDSNGNYVTKEEDELGYATSTDYDETGKKTAETDAKGEKTTYTYDQADQLTNMTLSNGTSILHSYDKEGNEVSKTIRAGADQTYKYEYDVMGKLVKTTDPLGNVLASEYDANSNLTKTISPNGNEVSLSYDGTDRVKSKSYNGTEKYNFTYDKNGNETSVVNKEQNTTKKRTFDNKNRLTELTDRGGSQTWTYPSDSDKLKTFSWTHGDQKGTNQFTYNKLDQMIEMKDSTSSYSFDYDENGNVQTFITGNGGGTSFSYDERNLVSSLHIGDKNGGSILTESYEYDANGNRTTINSSASGKVKYEYGKLNQLVKETHEDGTVIEYTYDGFGNRKTVTTVKDGSSKTVNASFNIMNQLTKVNDESISYDKNGNRTSDGKFTYTWDAEDNLTAVTKKGEDKPFATYKYDEKGNRIQKTVNGKVTNYFYDGDSLNVLYETDADNNVTKSYTYGDSGQLLSYTENGKKYFYHYNAHGDVIAISDSTGKTVAKYQYDAWGNPTKTEASDEVKDNRYRYAGYQYDEETGLYYLMARYYEPRNGVFLSLDPDPGSDGDSLDQNGYTYGNNNPVMNVDPDGHWVWFVVNAGFAVYDGYKAYKSGKGWKGVAVAAASGFVGGGKLKLTKKIGKWATSRHWYKGTFKTKRKSLDYHHNKHIVRNGKSYSKKRYTKVARAFYRSNKHLREKVILATGKKGYRIKNGKRTGYYTRSGKVVTFVNNKWKKKKKR", "sequence_length": 2347, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "35d654066eb67e23f938a5f070e4e14f7738f41ca58dfb57a713d86039f10efa", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/D4G3R4.json", "taxon_id": "645657", "uniprot_accession": "D4G3R4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Burkholderia cenocepacia (strain H111)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6531-pf20148.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20148", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6531-pf20148.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/paar-motif-pf05488.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05488", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/paar-motif-pf05488.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/rhs-pf03527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rhs-pf03527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/rhs-repeat-pf05593.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05593", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rhs-repeat-pf05593.yaml" } ], "pfam_ids": [ "PF03527", "PF05488", "PF05593", "PF20148", "PF25023", "PF25799" ], "protein_name": "Double-stranded DNA deaminase toxin A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYEAARVTDPIDHTSALAGFLVGAVLGIALIAAVAFATFTCGFGVALLAGMMAGIGAQALLSIGESIGKMFSSQSGNIITGSPDVYVNSLSAAYATLSGVACSKHNPIPLVAQGSTNIFINGRPAARKDDKITCGATIGDGSHDTFFHGGTQTYLPVDDEVPPWLRTATDWAFTLAGLVGGLGGLLKASGGLSRAVLPCAAKFIGGYVLGEAFGRYVAGPAINKAIGGLFGNPIDVTTGRKILLAESETDYVIPSPLPVAIKRFYSSGIDYAGTLGRGWVLPWEIRLHARDGRLWYTDAQGRESGFPMLRAGQAAFSEADQRYLTRTPDGRYILHDLGERYYDFGQYDPESGRIAWVRRVEDQAGQWYQFERDSRGRVTEILTCGGLRAVLDYETVFGRLGTVTLVHEDERRLAVTYGYDENGQLASVTDANGAVVRQFAYTNGLMTSHMNALGFTSSYVWSKIEGEPRVVETHTSEGENWTFEYDVAGRQTRVRHADGRTAHWRFDAQSQIVEYTDLDGAFYRIKYDAVGMPVMLMLPGDRTVMFEYDDAGRIIAETDPLGRTTRTRYDGNSLRPVEVVGPDGGAWRVEYDQQGRVVSNQDSLGRENRYEYPKALTALPSAHFDALGGRKTLEWNSLGKLVGYTDCSGKTTRTSFDAFGRICSRENALGQRITYDVRPTGEPRRVTYPDGSSETFEYDAAGTLVRYIGLGGRVQELLRNARGQLIEAVDPAGRRVQYRYDVEGRLRELQQDHARYTFTYSAGGRLLTETRPDGILRRFEYGEAGELLGLDIVGAPDPHATGNRSVRTIRFERDRMGVLKVQRTPTEVTRYQHDKGDRLVKVERVPTPSGIALGIVPDAVEFEYDKGGRLVAEHGSNGSVIYTLDELDNVVSLGLPHDQTLQMLRYGSGHVHQIRFGDQVVADFERDDLHREVSRTQGRLTQRSGYDPLGRKVWQSAGIDPEMLGRGSGQLWRNYGYDGAGDLIETSDSLRGSTRFSYDPAGRLISRANPLDRKFEEFAWDAAGNLLDDAQRKSRGYVEGNRLLMWQDLRFEYDPFGNLATKRRGANQTQRFTYDGQDRLITVHTQDVRGVVETRFAYDPLGRRIAKTDTAFDLRGMKLRAETKRFVWEGLRLVQEVRETGVSSYVYSPDAPYSPVARADTVMAEALAATVIDSAKRAARIFHFHTDPVGAPQEVTDEAGEVAWAGQYAAWGKVEATNRGVTAARTDQPLRFAGQYADDSTGLHYNTFRFYDPDVGRFINQDPIGLNGGANVYHYAPNPVGWVDPWGLAGSYALGPYQISAPQLPAYNGQTVGTFYYVNDAGGLESKVFSSGGPTPYPNYANAGHVEGQSALFMRDNGISEGLVFHNNPEGTCGFCVNMTETLLPENAKMTVVPPEGAIPVKRGATGETKVFTGNSNSPKSPTKGGC", "sequence_length": 1427, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d4c66f1e9745ffa6f4752ffd3aa91b1fda3fa59d9d38d475da6d276b514de98c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DUH5.json", "taxon_id": "1055524", "uniprot_accession": "P0DUH5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6531-pf20148.yaml", "qualification_status": "QUALIFIED", "record_id": "Pfam:PF20148", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6531-pf20148.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P16916", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03527", "PF05593", "PF15606", "PF20148", "PF25023" ], "protein_name": "Protein RhsA", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "aead58af4074c469e43aaa564934e2c238c653c87cd9a62961f0f137e7436e66", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSGKPAARQGDMTQYGGSIVQGSAGVRIGAPTGVACSVCPGGVTSGHPVNPLLGAKVLPGETDIALPGPLPFILSRTYSSYRTKTPAPVGSLGPGWKMPADIRLQLRDNTLILSDNGGRSLYFEHLFPGEDGYSRSESLWLVRGGVAKLDEGHRLAALWQALPEELRLSPHRYLATNSPQGPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGRTQTFHREAAGEFSGEITGVTDGAWRHFRLVLTTQAQRAEEARQQAISGGTEPSAFPDTLPGYTEYGRDNGIRLSAVWLTHDPEYPENLPAAPLVRYGWTPRGELAVVYDRSGKQVRSFTYDDKYRGRMVAHRHTGRPEIRYRYDSDGRVTEQLNPAGLSYTYQYEKDRITITDSLDRREVLHTQGEAGLKRVVKKEHADGSVTQSQFDAVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASAFYYNHHNQLTSATGPDGLELRREYDELGRLIQETAPDGDITRYRYDNPHSDLPCATEDATGSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQMTAVHREEGLSQYRAYDSRGQLIAVKDTQGHETRYEYNIAGDLTAVIAPDGSRNGTQYDAWGKAVRTTQGGLTRSMEYDAAGRVIRLTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGKLIRSEDEGLVTHWHYDEADRLTHRTVKGETAERWQYDERGWLTDISHISEGHRVAVHYRYDEKGRLTGERQTVHHPQTEALLWQHETRHAYNAQGLANRCIPDSLPAVEWLTYGSGYLAGMKLGDTPLVEYTRDRLHRETLRSFGRYELTTAYTPAGQLQSQHLNSLLSDRDYTWNDNGELIRISSPRQTRSYSYSTTGRLTGVHTTAANLDIRIPYATDPAGNRLPDPELHPDSTLSMWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYEEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADALQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALISKEGTTEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVTNTDPLGLEVFPRPFPLPIPWPKSPAQQQADDNAAKALTKWWNDTASQRIFDSLILNNPGLALDITMIASRGNVADTGITDRVNDIINDRFWSDGKKPDRCDVLQELIDCGDISAKDAKSTQKAWNCRHSRQSNDKKR", "sequence_length": 1377, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "aead58af4074c469e43aaa564934e2c238c653c87cd9a62961f0f137e7436e66", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P16916.json", "taxon_id": "83333", "uniprot_accession": "P16916", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4329-pf14220.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14220", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4329-pf14220.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P16917", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03527", "PF05593", "PF14220", "PF20148", "PF25023" ], "protein_name": "Protein RhsB", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "99b7b01b9660a699a7f6601ac6f19d18032feea3fe68044b0904bee186ac0260", "sequence_version": 4, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSGKPAARQGDMTQYGGSIVQGSAGVRIGAPTGVACSVCPGGVTSGHPVNPLLGAKVLPGETDIALPGPLPFILSRTYSSYRTKTPAPVGSLGPGWKMPADIRLQLRDNTLILSDNGGRSLYFEHLFPGEDGYSRSESLWLVRGGVAKLDEGHRLAALWQALPEELRLSPHRYLATNSPQGPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGRTQTFHREAAGEFSGEITGVTDGAWRHFRLVLTTQAQRAEEARQQAISGGTEPSAFPDTLPGYTEYGRDNGIRLSAVWLTHDPEYPENLPAAPLVRYGWTPRGELAVVYDRSGKQVRSFTYDDKYRGRMVAHRHTGRPEIRYRYDSDGRVTEQLNPAGLSYTYQYEKDRITITDSLDRREVLHTQGEAGLKRVVKKEHADGSVTQSQFDAVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASAFYYNHHNQLTSATGPDGLELRREYDELGRLIQETAPDGDITRYRYDNPHSDLPCATEDATGSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQMTAVHREEGLSQYRAYDSRGQLIAVKDTQGHETRYEYNIAGDLTAVIAPDGSRNGTQYDAWGKAVRTTQGGLTRSMEYDAAGRVIRLTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGKLIRSEDEGLVTHWHYDEADRLTHRTVKGETAERWQYDERGWLTDISHISEGHRVAVHYRYDEKGRLTGERQTVHHPQTEALLWQHETRHAYNAQGLANRCIPDSLPAVEWLTYGSGYLAGMKLGDTPLVEYTRDRLHRETLRSFGRYELTTAYTPAGQLQSQHLNSLLSDRDYTWNDNGELIRISSPRQTRSYSYSTTGRLTGVHTTAANLDIRIPYATDPAGNRLPDPELHPDSTLSMWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYEEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRSRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADALQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALISTEGATAWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNLYGYQLNPISDIDPLGLSMWEDAKSGACTNGLCGTLSAMIGPDKFDSIDSTAYDALNKINSQSICEDKEFAGLICKDNSGRYFSTAPNRGERKGSYPFNSPCPNGTEKVSAYHTHGADSHGEYWDEIFSGKDEKIVKSKDNNIKSFYLGTPSGNFKAIDNHGKEITNRKGLPNVCRVHGNM", "sequence_length": 1411, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "99b7b01b9660a699a7f6601ac6f19d18032feea3fe68044b0904bee186ac0260", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P16917.json", "taxon_id": "83333", "uniprot_accession": "P16917", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/rhs-pf03527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rhs-pf03527.yaml" } ], "pfam_ids": [ "PF03527", "PF05593", "PF20148", "PF25023" ], "protein_name": "Protein RhsC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGKPAARQGDMTQYGGSIVQGSAGVRIGAPTGVACSVCPGGVTSGHPVNPLLGAKVLPGETDIALPGPLPFILSRTYSSYRTKTPAPVGSLGPGWKMPADIRLQLRDNTLILSDNGGRSLYFEHLFPGEDGYSRSESLWLVRGGVAKLDEGHRLAALWQALPEELRLSPHRYLATNSPQGPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGRTQTFHREAAGEFSGEITGVTDGAGRHFRLVLTTQAQRAEEARQQAISGGTEPSAFPDTLPGYTEYGRDNGIRLSAVWLTHDPEYPENLPAAPLVRYGWTPRGELAAVYDRSNTQVRSFTYDDKYRGRMVAHRHTGRPEICYRYDSDGRVTEQLNPAGLSYTYQYEKDRITITDSLNRREVLHTQGEGGLKRVVKKEHADGSVTQSQFDAVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASAFYYNHHSQLTSATGPDGLEIRREYDEWGRLIQETAPDGDITRYRYDNPHSDLPCATEDATGSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQVTAVHREEGLSQYRAYDSRGQLIAVKDTQGHETRYEYNAAGDLTTVIAPDGSRNGTQYDAWGKAICTTQGGLTRSMEYDAAGRVIRLTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGKLIRSEDEGLVTHWHYDEADRLTHRTVNGETAERWQYDERGWLTDISHISEGHRVTVHYGYDSKGRLASEHLTVHHPQTNELLWQHETRHAYNAQGLANRCIPDSLPAVEWLTYGSGWLSGMKLGDTPLVEYTRDRLHRETLRSFGRYELTTAYTPAGQLQSQHLNSLLSDRDYTWNDNGELIRISSPRQTRSYSYSTTGRLTGVHTTAANLDIRIPYTTDPAGNRLPDPELHPDSALSMWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADTLQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVAQMQSQMDPVYTPARKIHLYHCDHRGLPLALISTEGTTAWYAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPISNIDPLGLETLKCIKPLHSMGGTGERSGPDIWGNPFYHQYLCVPDGKGDYTCGGQDQRGESKGDGLWGPGKASNDTKEAAGRCDLVETDNSCVENCLKGKFKEVRPRYSVLPDIFTPINLGLFKNCQDWSNDSLETCKMKCSGNNIGRFIRFVFTGVM", "sequence_length": 1397, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "062a9ffb8d536b6ca7a8f07c82e4d68f3105bd801f808cc2fa77b3ab571ee5b1", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P16918.json", "taxon_id": "83333", "uniprot_accession": "P16918", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf4329-pf14220.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF14220", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf4329-pf14220.yaml" } ], "pfam_ids": [ "PF03527", "PF05593", "PF14220", "PF20148", "PF25023" ], "protein_name": "Protein RhsD", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGKPAARQGDMTQYGGPIVQGSAGVRIGAPTGVACSVCPGGMTSGNPVNPLLGAKVLPGETDLALPGPLPFILSRTYSSYRTKTPAPVGVFGPGWKAPSDIRLQLRDDGLILNDNGGRSIHFEPLLPGEAVYSRSESMWLVRGGKAAQPDGHTLARLWGALPPDIRLSPHLYLATNSAQGPWWILGWSERVPGAEDVLPAPLPPYRVLTGMADRFGRTLTYRREAAGDLAGEITGVTDGAGREFRLVLTTQAQRAEEARTSSLSSSDSSRPLSASAFPDTLPGTEYGPDRGIRLSAVWLMHDPAYPESLPAAPLVRYTYTEAGELLAVYDRSNTQVRAFTYDAQHPGRMVAHRYAGRPEMRYRYDDTGRVVEQLNPAGLSYRYLYEQDRITVTDSLNRREVLHTEGGAGLKRVVKKELADGSVTRSGYDAAGRLTAQTDAAGRRTEYGLNVVSGDITDITTPDGRETKFYYNDGNQLTAVVSPDGLESRREYDEPGRLVSETSRSGETVRYRYDDAHSELPATTTDATGSTRQMTWSRYGQLLAFTDCSGYQTRYEYDRFGQMTAVHREEGISLYRRYDNRGRLTSVKDAQGRETRYEYNAAGDLTAVITPDGNRSETQYDAWGKAVSTTQGGLTRSMEYDAAGRVISLTNENGSHSVFSYDALDRLVQQGGFDGRTQRYHYDLTGKLTQSEDEGLVILWYYDESDRITHRTVNGEPAEQWQYDGHGWLTDISHLSEGHRVAVHYGYDDKGRLTGECQTVENPETGELLWQHETKHAYNEQGLANRVTPDSLPPVEWLTYGSGYLAGMKLGGTPLVEYTRDRLHRETVRSFGSMAGSNAAYELTSTYTPAGQLQSQHLNSLVYDRDYGWSDNGDLVRISGPRQTREYGYSATGRLESVRTLAPDLDIRIPYATDPAGNRLPDPELHPDSTLTVWPDNRIAEDAHYVYRHDEYGRLTEKTDRIPAGVIRTDDERTHHYHYDSQHRLVFYTRIQHGEPLVESRYLYDPLGRRMAKRVWRRERDLTGWMSLSRKPEVTWYGWDGDRLTTVQTDTTRIQTVYEPGSFTPLIRVETENGEREKAQRRSLAETLQQEGSENGHGVVFPAELVRLLDRLEEEIRADRVSSESRAWLAQCGLTVEQLARQVEPEYTPARKAHLYHCDHRGLPLALISEDGNTAWSAEYDEWGNQLNEENPHHVYQPYRLPGQQHDEESGLYYNRHRYYDPLQGRYITQDPMGLKGGWNLYQYPLNPLQQIDPMGLLQTWDDARSGACTGGVCGVLSRIIGPSKFDSTADAALDALKETQNRSLCNDMEYSGIVCKDTNGKYFASKAETDNLRKESYPLKRKCPTGTDRVAAYHTHGADSHGDYVDEFFSSSDKNLVRSKDNNLEAFYLATPDGRFEALNNKGEYIFIRNSVPGLSSVCIPYHD", "sequence_length": 1426, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f92b5e3b443db0369ad47eec4988d71a4b89c83de82b8ba6e9f06f2893735059", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P16919.json", "taxon_id": "83333", "uniprot_accession": "P16919", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm-4-9-pf02018.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02018", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm-4-9-pf02018.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm96-pf24517.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24517", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm96-pf24517.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6531-pf20148.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20148", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6531-pf20148.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/rhs-repeat-pf05593.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05593", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rhs-repeat-pf05593.yaml" } ], "pfam_ids": [ "PF02018", "PF05593", "PF20148", "PF24517", "PF25023" ], "protein_name": "tRNA nuclease WapA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKRKRRNFKRFIAAFLVLALMISLVPADVLAKSTEEENGNRIAADDPEETLQKEQTEEAVPFDPKDINKEGEITSERTENTKLYYEGDGVYKQEVYLDPIHTKETPDADWEDISPELKESTSKQVETENAILNSDFQKQMKNGLYATFEHNDHKVTYSLAEAKGPNKTSLTPKDTSADYKTDSNEIVYPDVFPNIDLQTFTFNENIKEDLVLHQYNGYNTFTFQLKTDLQAKEQEDGSIDFSDEKGKVVFSVPKPFMTDSKLDELSGEVERSDKVSYKLEKNEEGYLLHLTADENWLKDPERVYPVSIDPSTSLSVSSDTFVMSAYPTTNYSASSQKWDANLKAYVLKTGYYDKTTGTNYAFMKFNNLKPIQNMTVTKATLKTYVAHSYYGTKATGLWLDTVNSNYDNAKVTWNTKPASKNIGKADVHKGQWASYDVTAAVKSWNSGGANYGFKLHTNGNGKEYWKKLISSANSANKPYIEVTYTIPKGNTPTIKAYHNGDSTGYFDISWKKVEGAKGYKVWIYNGKEYQAISAGNVTSWSTKGKKIWPTSAEIASKRYKLHLDGKDGAELALDPSPVYKNSGGSYATSKNYWIGVSAIFDQGEGAMSAPAKPVIPNVGKAQAPSAKGYNNGNATGYFDLSWKAVSGATGYKVQVFNGKGFETLDLGNQTSWTTKGKKIWPTSAEIKAGKYALHLKDGSGAELPINPGPTYKNAGGDGAKRNYSFKIIAYNKDGEAIASPAATPALPDIARPKNVTGYLYTNTKSSQTGYVNLIWEKVQNAKGYKVNIYNGKEYQSFDVGDADHWTTQNKNIWPTSEEIKAGSYKLHTDGKGGELALDPSPVYNNANGNYKGKKNYSFTLVAYDANGETIPTAPFNPTFHEGAEFLGTEEYWSIIDIPSGQLNGATGNVIVNEEDLSIDGRGPGLGLSRTYNSLDSSDHLFGQGWYADAETSVISTDGGAMYIDEDATTHRFTKKADGTYQPPTGVYLELTETADQFILKTKDQTNAYFNKKGGKLQKVVDGHNNATVYTYNDKNQLTAITDASGRKLTFTYDENGHVTSITGPKNKKVTYSYENDLLKKVTDTDGTVTSYDYDSEGRLVKQYSANSTEAKPVFTEYQYSGHRLEKAINAKKETYVYSYDADKKTLLMTQPNGRKVQYGYNEAGNPIQVIDDAEGLKITTNTKYEGNNVVEDVDPNDVGTGKATESYQYDKDGNVTSVKDAYGTETYEYNKNNDVTKMKDTEGNVTDIAYDGLDAVSETDQSGKSSSAAVYDKYGNQIQSSKDLSASTNILKDGSFEAQKSGWNLTASKDSGKISVIADKSGVLSGSKALEVLSQSTSAGTDHGYSSATQTVELEPNTTYTLSGKIKTDLAKSRAYFNIDLRDKDQKRIQWIHNEYSALAGKNDWTKRQITFTTPANAGKAVVYMEVDHKDKDGKGKAWFDEVQLEKGEVSSSYNPVQNSSFTSATENWNVSGASVDSEEGFNDDVSLKAARTSASQAGSVTKQTVVLGQSANDKPVYLTLTGMSKASSVKFTDEKDYSLQANVTYADGSTGIYNAKFPSGTQEWNRAAVVIPKTKPINKVDISILFQKSATGTVWFDDIRLIEGSLLTKSTYDSNGNYVTKEEDELGYATSTDYDETGKKTSETDAKGEKTTYTYDQADQLTNMTLSNGTSILHSYDKEGNEVSKTIRAGADQTYKFEYDVMGKLVKTTDPLGNVLASEYDANSNLTKTISPNGNEVSLSYDGTDRVKSKSYNGTEKYIFTYDKNGNETSVVNKEQNTTKKRTFDNKNRLTELTDRGGSQTWTYPSDSDKLKTFSWIHGDQKGTNQFTYNKLDQMIEMKDSTSSYSFDYDENGNVQTFITGNGGGTSFSYDERNLVSSLHIGDKNGGDILTESYEYDANGNRTTINSSASGKVQYEYGKLNQLVKETHEDGTVIEYTYDGFGNRKTVTTIKDGSSKTVNASFNIMNQLTKVNDESISYDKNGNRTSDGKFTYTWDAEDNLTAVTKKGEDKPFATYKYDEKGNRIQKTVNGKVTNYFYDGDSLNVLYETDADNNVTKSYTYGDSGQLLSYTENGKKYFYHYNAHGDIIAISDSTGKTVAKYQYDAWGNPTKTEASDEVKDNRYRYAGYQYDEETGLYYLMARYYEPRNGVFLSLDPDPGSDGDSLDQNGYAYGNNNPVMNVDPDGHWVWLVVNAGFAAYDGYKAYKSGKGWKGAAWAAASNFGPGKIFKGASRAYKFTKKAVKITGHTRHGLNQSIGRNGGRGVNLRAKLNAVRSPKKVIKQPNGATKYVGKKATVVLNKRGKVITAYGSSRAKGSKHVFHTHGKGNKSKRRR", "sequence_length": 2334, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6daf79be870a6882fc20be002833f169077825c5caf6214516788f4d07b83d8d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q07833.json", "taxon_id": "224308", "uniprot_accession": "Q07833", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/rhs-pf03527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rhs-pf03527.yaml" } ], "pfam_ids": [ "PF03527", "PF05593", "PF20148" ], "protein_name": "Toxin protein Tse5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGLPVSHVGEKVSGGVISTGSPTVHVGSSAVGLADRVSACVPLVGKPVNPMLGSKLLPEEVDFALAAPDTFTFARGYLSSNPRIGRLGRGWWLPGESMHLELSEDACVLVDAQGRRIGFPALAPGAQHYSGSEELWLRRGGSSGGEAQAWRGRWAAVPAELQTQEGSVLVLSGHSYLHFQRCPDGIWRLQASFGRAGYRTEFRWSGRGLLTGVRDSAGRSYALVYQQACEPSEGDDGLRLFGVILASHDGPPPDYIDPQSPGLDWLVRYQFSDSGDLIAVRDRLGQVVRVFAWREHMLVAHGEPGGLEVRYEWDVHAPHGRVVKQIEAGGLTRTFRYLRDATEVSDSLGRVERYEFAGEGGQRRWTALVRADGSRSEFDYDLFGRLVAMRDPLGRETRRRRDGQGRMLEEESPGKARYRKRVDEETGLLVELEDAMQRRWTFERDERGNATTVRGPAGSTRYAYEDPRLPDRPTRIVDPRGGERRLEWNRFGLLAALTDCSGQVWRYDYDNEGRLVASSDPLGQLTRRRYDPLGQLIGLELADGSALSYEYDALGRQTRIADAEGHATLFSWGHGDLLARVSDAGGGELSYLHDEAGRLVALTNENGVQAQFRYDLLDRLVEETGFDGRRQRYRYNAADELIAREDADGRETTYAYDRDGRLASIRVPATEHAPALVERYRWLADGRLASAGGADCEVRYTYDEVGNLRLESQVHADGWVYSVEHSHDALGVRQTSRYGDAPPVAWLTYGPGHLHGALVGAVELAFERDALHREVRRDARRDGQDDALFTQERQHAPLGRLQRSRLRLAGGFDWQRGYRYDGLGQLVGIDDNQYPSVRYEYDLGGRLLASRRAGAAASTYRYDAAGNRLEGVGEHAREDARQAFAENELYRSGFSRSETRASQAGEGPARWAGNRVERIAGNRYRFDALGNLVERIGADGERLRLAYDGAQRLVHLTRDYADGTRLEARYRYDALSRRIAKVVLRDGVEQQVRFGWDGDRQCAEAFARELRTTVHEPGGFVPLLRLEQACEPDPPELLQLRQAFAAEGQPLPAQCVPALGEARIAFFHTDHLGTPLQLSDERGQLRWQGVPDDWRAVAPERQPGAQPIRFQGQYHDEESGLYYNRYRYYLPEAGRYASQDPLGLGGGPNPYAYALNAPTLAYDPTGLIIPLVVIGAFAARAAIGAALGAGIELGMQTGKQVLGQMKDNWDSDRDLTDIKWKCIDINWKHVGASAAIGTVAPGMLSTGKTVVQSAKAIRTLSGQAANTANRAAKLAARKAAHADTIKKAVATQAAWQTGKQIVKCPLKDEEEECPPQ", "sequence_length": 1317, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "93d76dbeab3397f716978fb3fb9ca4ffe6c243758bafa78738d5d986ec9c7f9d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9I0F4.json", "taxon_id": "208964", "uniprot_accession": "Q9I0F4", "uniprot_release": "2026_03" } ], "pfam_id": "PF20148", "short_name": "DUF6531", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20149", "short_name": "DUF6532", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20151", "short_name": "DUF6533", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20152", "short_name": "DUF6534", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20153", "short_name": "DUF6535", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20163", "short_name": "DUF6536", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20169", "short_name": "DUF6537", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20172", "short_name": "DUF6538", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/znf-rz-type-pf20173.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20173", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/znf-rz-type-pf20173.yaml" } ], "pfam_ids": [ "PF00097", "PF20173", "PF30683", "PF30684", "PF30685", "PF30686", "PF30694", "PF30695", "PF30696" ], "protein_name": "E3 ubiquitin-protein ligase RNF213", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MECPQCGHVSSEKAPKFCSECGQKLPSAATVQGDLKNDNTLVVSSTPEGKTEQGAVLREEEVLLSSTDPGKELEKPEESDSNASWTTQMSKKEKRRRKRQGTISSSEAPSSGLWSLDMPPSPGSHNSALPQNQAQQGGAASQPGHPLDTENMPMEDGFVHTEGSGSPLQGQAAERTDAQSNLAPSDLAEVKDLNTSKPSVDKGLPLDGGPALSAFKGHPKMTDASQKAPLPESKGETSGQEKKVPPIDAAASPVKTAGKETGEDVRKPKPSPVSPVASKHGDQEAELKGKLATPVRKSNEGGNTQPEDQRKPGEGRNFAAAVKTQQAAAPQQAAAPEPTSAFNPRDTVTVYFHAIVSRHFGFNPEEHKVYVRGGEGLGQKGWTDACEMYCTQDLHDLGSLVEGKMDIPRQSLDKPIPYKYVIHRGGSSKDTVEYEFIYEQAQKKGEHVNRCLRVVSTSLGNGDWHQYDDIICMRSTGFFQQAKNRILDSTRKELLKGKKQAAVVMLDRIFSVLQPWSDINLQSFMTQFLQFYSVVREPMIHDGRARKWTSLQYEEKEVWTNLWEHVKKQMAPFLEGKSGESLPADCPVRSKLTLGLSILFMVEAAEFTVPKKDLDSLCYLLIPSAGSPEALHSDLSPVLRIRQRWRIYLTNLCLRCIDERCDRWLGILPLLHTCMQKSPPKKNSKSQPEDTWAGLEGISFSEFRDKAPTRSQPLQFMQSKMALLRVDEYLFRSWLSVVPLESLSSYLENSIDYLSDVPVRVLDCLQGISYRLPGLRKISNQNMKKDVENVFKMLMHLVDIYQHRIFGENLLQIYLTECLTLHETVCNITANHQFFEIPALSAELICKLLELSPPGHTDEGLPEKSYEDLVTSTLQEALATTRNWLRSLFKSRMLSISSAYVRLTYSEEMAVWRRLVEIGFPEKHGWKGSLLGDMEGRLKQEPPRLQISFFCSSQCRDGGLHDSVSRSFEKCVIEAVSSACQSQTSVLEGLSCQDLQKFGTLLSAVITKSWPVHNGEPVFDVDEIFKYLLKWPDVRQLFELCGTNEKIIDNITEEGRQLMATAESVFQKVAGELENGTIVVGQLELILEHQSQFLDIWNLNRRRLPSQEKACDVRSLLKRRRDDLLFLKQEKRYVESLLRQLGRVKHLVQVDFGNIEIIHSQDLSNKKLNEAVIKLPNSSSYKRETHYCLSPDIREMASKLDSLKDSHIFQDFWQETAESLNTLDKDPRELKVSLPEVLEYLYNPCYDNFYTLYENLKSGKITFAEVDAIFKDFVDKYDELKNDLKFMCTMNPQDQKGWISERVGQIKEYHTLHQAVSSAKVILQVRRALGVTGDFSVLNPLLNFADSFEDFGNEKLDQISPQFIKAKQLLQDISEPRQRCLEELARQTELVAWLHKALEDINELKVFVDLASISAGENDIDVDRVACFHDAVQGYASLLYKMDERTNFSDFMNHLQELWRALDNDQHLPDKLKDSARNLEWLKTVKESHGSVELSSLSLATAINSRGVYVIEAPKDGQKISPDTVLRLLLPDGHGYPEALRTYSTEELKELLNKLMLMSGKKDHNSNTEVEKFSEVFSNMQRLVHVFIKLHCAGNMLFRTWTAKVYCCPDGGIFMNFGLELLSQLTEKGDVIQLLGALCRQMEDFLDNWKTVVAQKRAEHFYLNFYTAEQLVYLSSELRKPRPSEAALMMLSFIKGKCTVQDLVQATSACESKADRYCLREVMKKLPQQLLSEPSLMGKLQVIMMQSLVYMSAFLPHCLDLDALGRCLAHLATMGGTPVERPLPKGLQAGQPNLILCGHSEVLPAALAIYMQAPRQPLPTFDEVLLCTPATTIEEVELLLRRCLTSGSQGHKVYSLLFADQLSYEVGCQAEEFFQSLCTRAHREDYQLVILCDAAREHCYIPSTFSQYKVPLVPQAPLPNIQAYLQSHYQVPKRLLSAATVFRDGLCVGIVTSERAGVGKSLYVNTLHTKLKAKLRDETVPLKIIRLTEPHLDENQVLSALLPFLKEKYQKMPVIFHIDISTSVQTGIPIFLFKLLILQYLMDINGKIWRRSPGHLYLVEIPQGLSVQPKRSSKLNARAPLFKFLDLFPKVTCRPPKEVIDMELTPERSHTDPAMDPVEFCSEAFQRPYQYLKRFHQQQNLDTFQYEKGSVEGSPEECLQHFLIYCGLINPSWSELRNFAWFLNCQLKDCEASIFCKSAFTGDTLRGFKNFVVTFMILMARDFATPTLHTSDQSPGRQSVTIGEVVEEDLAPFSLRKRWESEPHPYVFFNGDHMTMTFIGFHLETNNNGYVDAINPSNGKVIKKDVMTKELFDGLRLQRVPFNIDFDNLPRYEKLERLCLALGIEWPIDPDETYELTTDNMLKILAIEMRFRCGIPVIIMGETGCGKTRLIKFLSDLKRGSVEAETMKLVKVHGGTTPSMIYSKVKEAERTAFSNKAQHKLDTILFFDEANTTEAVSCIKEILCDRTVDGEHLHEDSGLHIIAACNPYRKHSQEMILRLESAGLGYRVSAEETADRLGSIPLRQLVYRVHALPPSLIPLVWDFGQLNDSAEKLYIQQIVQRLVDSVSVNPSETCVIADVLSASQMFMRKRENECGFVSLRDVERCVKVFRWFHDHSDMLLKELDKFLHESSDSTHTFERDPVLWSLVMAIGVCYHASLEEKASYRTAIARCFPKPYNSSRAILDEVTHVQDLFLRGAPIRTNIARNLALKENVFMMVICIELKIPLFLVGKPGSSKSLAKIIVADAMQGQAAFSELFRCLKQVHLVSFQCSPHSTPQGIISTFKQCARFQQGKDLGQYVSVVVLDEVGLAEDSPKMPLKTLHPLLEDGCIEDDPAPYKKVGFVGISNWALDPAKMNRGIFVSRGSPNEKELIESAEGICSSDRLVQDKIRGYFAPFAKAYETVCQKQDKEFFGLRDYYSLIKMVFAKAKASKRGLSPQDITHAVLRNFSGKDNIQALSIFTASLPEARYKEEVSTVELIKQNIYPGPQASSRGLDGAESRYLLVLTRNYVALQILQQTFFEGQQPEIIFGSSFPQDQEYTQICRNINRVKICMETGKMVVLLNLQNLYESLYDALNQYYVYLGGQKYVDLGLGTHRVKCRVHTAFRLIVIEEKDVVYKQFPVPLINRLEKHYLDMNTVLQPWQKSIVQELQQWAHEFADVKADQFIARHKYSPADVFIGYHSDACASVVLQAVERQGCRDLTEELYRKVSEEARSILLDCATPDAVVRLSGSSLGSFTAKQLSQEYYYAQQHNSFVDFLQAHLRMTHHECRAVFTEITTFSRLLTGNDCDVLASELRGLASKPVVLSLQQYDTEYSFLKDVRSWLTNPGKRKVLVIQADFDDGTRSAQLVASAKYTAINEINKTQGTKDFVFVYFVTKLSRMGSGTSYVGFHGGLWRSVHIDDLRRSTIMASDVTKLQNVTISQLFKPEDKPEQEEMEIETSQSKELAEEQMEVEDSEEMKKASDPRSCDCSQFLDTTRLVQSCVQGAVGMLRDQNESCARNMRRVTILLDLLNEDNTRNASFLRESKMRLHVLLNKQEENQVRSLKEWVTREAANQDALQEAGTFRHTLWKRVQDVVTPILASMIAHIDRDGNLELLAQPDSPAWVQDLWMFIYSDIKFLNISLVLNNTRSNSEMSFILVQSHMNLLKDAYNAVPFSWRIRDYLEELWVQAQYITDTEGLSKKFVEIFQKTPLGVFLAQFPVAQQQKLLQSYLKDFLLLTMKVSSREELMFLQMALWSCLRELQEASGTPDETYKFPLSLPWVHLAFQHFRTRLQNFSRILTIHPQVLSSLSQAAEKHSLAGCEMTLDAFAAMACAEMLKGDLLKPSPKAWLQLVKNLSTPLELVCSEGYLCDSGSMTRSVIQEVRALWNRIFSIALFVEHVLLGTESHIPELSPLVTTYVSLLDKCLEEDSNLKTCRPFVAVMTTLCDCKDKASKKFSRFGIQPCFICHGDAQDPVCLPCDHVYCLRCIQTWLIPGQMMCPYCLTDLPDKFSPTVSQDHRKAIEKHAQFRHMCNSFFVDLVSTMCFKDNTPPEKSVIDTLLSLLFVQKELLRDASQKHREHTKSLSPFDDVVDQTPVIRSVLLKLLLKYSFHEVKDYIQNYLTQLEKKAFLTEDKTELYLLFISCLEDSVHQKTSAGCRNLEQVLREEGHFLRTYSPGLQGQEPVRIASVEYLQEVARVRLCLDLAADFLSELQEGSELAEDKRRFLKHVEEFCTRVNNDWHRVYLVRKLSSQRGMEFVQSFSKQGHPCQWVFPRKVIAQQKDHVSLMDRYLVHGNEYKAVRDATAKAVLECKTLDIGNALMACRSPKPQQTAYLLLALYTEVAALYRSPNGSLHPEAKQLEAVNKFIKESKILSDPNIRCFARSLVDNTLPLLKIRSANSILKGTVTEMAVHVATILLCGHNQILKPLRNLAFYPVNMANAFLPTMPEDLLVHARTWRGLENVTWYTCPRGHPCSVGECGRPMQESTCLDCGLPVGGLNHTPHEGFSAIRNNEDRTQTGHVLGSPQSSGVAEVSDRGQSPVVFILTRLLTHLAMLVGATHNPQALTVIIKPWVQDPQGFLQQHIQRDLEQLTKMLGRSADETIHVVHLILSSLLRVQSHGVLNFNAELSTKGCRNNWEKHFETLLLRELKHLDKNLPAINALISQDERISSNPVTKIIYGDPATFLPHLPQKSIIHCSKIWSCRRKITVEYLQHIVEQKNGKETVPVLWHFLQKEAELRLVKFLPEILALQRDLVKQFQNVSRVEYSSIRGFIHSHSSDGLRKLLHDRITIFLSTWNALRRSLETNGEIKLPKDYCCSDLDLDAEFEVILPRRQGLGLCGTALVSYLISLHNNMVYTVQKFSNEDNSYSVDISEVADLHVISYEVERDLNPLILSNCQYQVQQGGETSQEFDLEKIQRQISSRFLQGKPRLTLKGIPTLVYRRDWNYEHLFMDIKNKMAQSSLPNLAISTISGQLQSYSDACEALSIIEITLGFLSTAGGDPGMDLNVYIEEVLRMCDQTAQVLKAFSRCQLRHIIALWQFLSAHKSEQRLRLNKELFREIDVQYKEELSTQHQRLLGTFLNEAGLDAFLLELHEMIVLKLKGPRAANSFNPNWSLKDTLVSYMETKDSDILSEVESQFPEEILMSSCISVWKIAATRKWDRQSR", "sequence_length": 5148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e9a3693c7ed17d1c246f21250e7bef9ee97b87fbf5f87955a7c778ecb94749cf", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/E9Q555.json", "taxon_id": "10090", "uniprot_accession": "E9Q555", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/znf-rz-type-pf20173.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20173", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/znf-rz-type-pf20173.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q63HN8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00097", "PF20173", "PF30683", "PF30684", "PF30685", "PF30686", "PF30694", "PF30695", "PF30696" ], "protein_name": "E3 ubiquitin-protein ligase RNF213", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "9cef140f994aae9c50e9f45b9dc8638c6accc465e77a2d80aab56ec4204f091f", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MECPSCQHVSKEETPKFCSQCGERLPPAAPIADSENNNSTMASASEGEMECGQELKEEGGPCLFPGSDSWQENPEEPCSKASWTVQESKKKKRKKKKKGNKSASSELASLPLSPASPCHLTLLSNPWPQDTALPHSQAQQSGPTGQPSQPPGTATTPLEGDGLSAPTEVGDSPLQAQALGEAGVATGSEAQSSPQFQDHTEGEDQDASIPSGGRGLSQEGTGPPTSAGEGHSRTEDAAQELLLPESKGGSSEPGTELQTTEQQAGASASMAVDAVAEPANAVKGAGKEMKEKTQRMKQPPATTPPFKTHCQEAETKTKDEMAAAEEKVGKNEQGEPEDLKKPEGKNRSAAAVKNEKEQKNQEADVQEVKASTLSPGGGVTVFFHAIISLHFPFNPDLHKVFIRGGEEFGESKWDSNICELHYTRDLGHDRVLVEGIVCISKKHLDKYIPYKYVIYNGESFEYEFIYKHQQKKGEYVNRCLFIKSSLLGSGDWHQYYDIVYMKPHGRLQKVMNHITDGPRKDLVKGKQIAAALMLDSTFSILQTWDTINLNSFFTQFEQFCFVLQQPMIYEGQAQLWTDLQYREKEVKRYLWQHLKKHVVPLPDGKSTDFLPVDCPVRSKLKTGLIVLFVVEKIELLLEGSLDWLCHLLTSDASSPDEFHRDLSHILGIPQSWRLYLVNLCQRCMDTRTYTWLGALPVLHCCMELAPRHKDAWRQPEDTWAALEGLSFSPFREQMLDTSSLLQFMREKQHLLSIDEPLFRSWFSLLPLSHLVMYMENFIEHLGRFPAHILDCLSGIYYRLPGLEQVLNTQDVQDVQNVQNILEMLLRLLDTYRDKIPEEALSPSYLTVCLKLHEAICSSTKLLKFYELPALSAEIVCRMIRLLSLVDSAGQRDETGNNSVQTVFQGTLAATKRWLREVFTKNMLTSSGASFTYVKEIEVWRRLVEIQFPAEHGWKESLLGDMEWRLTKEEPLSQITAYCNSCWDTKGLEDSVAKTFEKCIIEAVSSACQSQTSILQGFSYSDLRKFGIVLSAVITKSWPRTADNFNDILKHLLTLADVKHVFRLCGTDEKILANVTEDAKRLIAVADSVLTKVVGDLLSGTILVGQLELIIKHKNQFLDIWQLREKSLSPQDEQCAVEEALDWRREELLLLKKEKRCVDSLLKMCGNVKHLIQVDFGVLAVRHSQDLSSKRLNDTVTVRLSTSSNSQRATHYHLSSQVQEMAGKIDLLRDSHIFQLFWREAAEPLSEPKEDQEAAELLSEPEEESERHILELEEVYDYLYQPSYRKFIKLHQDLKSGEVTLAEIDVIFKDFVNKYTDLDSELKIMCTVDHQDQRDWIKDRVEQIKEYHHLHQAVHAAKVILQVKESLGLNGDFSVLNTLLNFTDNFDDFRRETLDQINQELIQAKKLLQDISEARCKGLQALSLRKEFICWVREALGGINELKVFVDLASISAGENDIDVDRVACFHDAVQGYASLLFKLDPSVDFSAFMKHLKKLWKALDKDQYLPRKLCDSARNLEWLKTVNESHGSVERSSLTLATAINQRGIYVIQAPKGGQKISPDTVLHLILPESPGSHEESREYSLEEVKELLNKLMLMSGKKDRNNTEVERFSEVFCSVQRLSQAFIDLHSAGNMLFRTWIAMAYCSPKQGVSLQMDFGLDLVTELKEGGDVTELLAALCRQMEHFLDSWKRFVTQKRMEHFYLNFYTAEQLVYLSTELRKQPPSDAALTMLSFIKSNCTLRDVLRASVGCGSEAARYRMRRVMEELPLMLLSEFSLVDKLRIIMEQSMRCLPAFLPDCLDLETLGHCLAHLAGMGGSPVERCLPRGLQVGQPNLVVCGHSEVLPAALAVYMQTPSQPLPTYDEVLLCTPATTFEEVALLLRRCLTLGSLGHKVYSLLFADQLSYEVARQAEELFHNLCTQQHREDYQLVMVCDGDWEHCYLPSAFSQHKVFVTPQAPLEAIQAYLAGHYRVPKQTLSAAAVFNDRLCVGIVASERAGVGKSLYVKRLHDKMKMQLNVKNVPLKTIRLIDPQVDESRVLGALLPFLDAQYQKVPVLFHLDVTSSVQTGIWVFLFKLLILQYLMDINGKMWLRNPCHLYIVEILERRTSVPSRSSSALRTRVPQFSFLDIFPKVTCRPPKEVIDMELSALRSDTEPGMDLWEFCSETFQRPYQYLRRFNQNQDLDTFQYQEGSVEGTPEECLQHFLFHCGVINPSWSELRNFARFLNYQLRDCEASLFCNPSFIGDTLRGFKKFVVTFMIFMARDFATPSLHTSDQSPGKHMVTMDGVREEDLAPFSLRKRWESEPHPYVFFNDDHTTMTFIGFHLQPNINGSVDAISHLTGKVIKRDVMTRDLYQGLLLQRVPFNVDFDKLPRHKKLERLCLTLGIPQATDPDKTYELTTDNMLKILAIEMRFRCGIPVIIMGETGCGKTRLIKFLSDLRRGGTNADTIKLVKVHGGTTADMIYSRVREAENVAFANKDQHQLDTILFFDEANTTEAISCIKEVLCDHMVDGQPLAEDSGLHIIAACNPYRKHSEEMICRLESAGLGYRVSMEETADRLGSIPLRQLVYRVHALPPSLIPLVWDFGQLSDVAEKLYIQQIVQRLVESISLDENGTRVITEVLCASQGFMRKTEDECSFVSLRDVERCVKVFRWFHEHSAMLLAQLNAFLSKSSVSKNHTERDPVLWSLMLAIGVCYHASLEKKDSYRKAIARFFPKPYDDSRLLLDEITRAQDLFLDGVPLRKTIAKNLALKENVFMMVVCIELKIPLFLVGKPGSSKSLAKTIVADAMQGPAAYSDLFRSLKQVHLVSFQCSPHSTPQGIISTFRQCARFQQGKDLQQYVSVVVLDEVGLAEDSPKMPLKTLHPLLEDGCIEDDPAPHKKVGFVGISNWALDPAKMNRGIFVSRGSPNETELIESAKGICSSDILVQDRVQGYFASFAKAYETVCKRQDKEFFGLRDYYSLIKMVFAAAKASNRKPSPQDIAQAVLRNFSGKDDIQALDIFLANLPEAKCSEEVSPMQLIKQNIFGPSQKVPGGEQEDAESRYLLVLTKNYVALQILQQTFFEGDQQPEIIFGSGFPKDQEYTQLCRNINRVKICMETGKMVLLLNLQNLYESLYDALNQYYVHLGGQKYVDLGLGTHRVKCRVHPNFRLIVIEEKDVVYKHFPIPLINRLEKHYLDINTVLEKWQKSIVEELCAWVEKFINVKAHHFQKRHKYSPSDVFIGYHSDACASVVLQVIERQGPRALTEELHQKVSEEAKSILLNCATPDAVVRLSAYSLGGFAAEWLSQEYFHRQRHNSFADFLQAHLHTADLERHAIFTEITTFSRLLTSHDCEILESEVTGRAPKPTLLWLQQFDTEYSFLKEVRNCLTNTAKCKILIFQTDFEDGIRSAQLIASAKYSVINEINKIRENEDRIFVYFITKLSRVGRGTAYVGFHGGLWQSVHIDDLRRSTLMVSDVTRLQHVTISQLFAPGDLPELGLEHRAEDGHEEAMETEASTSGEVAEVAEEAMETESSEKVGKETSELGGSDVSILDTTRLLRSCVQSAVGMLRDQNESCTRNMRRVVLLLGLLNEDDACHASFLRVSKMRLSVFLKKQEESQFHPLEWLAREACNQDALQEAGTFRHTLWKRVQGAVTPLLASMISFIDRDGNLELLTRPDTPPWARDLWMFIFSDTMLLNIPLVMNNERHKGEMAYIVVQNHMNLSENASNNVPFSWKIKDYLEELWVQAQYITDAEGLPKKFVDIFQQTPLGRFLAQLHGEPQQELLQCYLKDFILLTMRVSTEEELKFLQMALWSCTRKLKAASEAPEEEVSLPWVHLAYQRFRSRLQNFSRILTIYPQVLHSLMEARWNHELAGCEMTLDAFAAMACTEMLTRNTLKPSPQAWLQLVKNLSMPLELICSDEHMQGSGSLAQAVIREVRAQWSRIFSTALFVEHVLLGTESRVPELQGLVTEHVFLLDKCLRENSDVKTHGPFEAVMRTLCECKETASKTLSRFGIQPCSICLGDAKDPVCLPCDHVHCLRCLRAWFASEQMICPYCLTALPDEFSPAVSQAHREAIEKHARFRQMCNSFFVDLVSTICFKDNAPPEKEVIESLLSLLFVQKGRLRDAAQRHCEHTKSLSPFNDVVDKTPVIRSVILKLLLKYSFHDVKDYIQEYLTLLKKKAFITEDKTELYMLFINCLEDSILEKTSAYSRNDELNHLEEEGRFLKAYSPASRGREPANEASVEYLQEVARIRLCLDRAADFLSEPEGGPEMAKEKQCYLQQVKQFCIRVENDWHRVYLVRKLSSQRGMEFVQGLSKPGRPHQWVFPKDVVKQQGLRQDHPGQMDRYLVYGDEYKALRDAVAKAVLECKPLGIKTALKACKTPQSQQSAYFLLTLFREVAILYRSHNASLHPTPEQCEAVSKFIGECKILSPPDISRFATSLVDNSVPLLRAGPSDSNLDGTVTEMAIHAAAVLLCGQNELLEPLKNLAFSPATMAHAFLPTMPEDLLAQARRWKGLERVHWYTCPNGHPCSVGECGRPMEQSICIDCHAPIGGIDHKPRDGFHLVKDKADRTQTGHVLGNPQRRDVVTCDRGLPPVVFLLIRLLTHLALLLGASQSSQALINIIKPPVRDPKGFLQQHILKDLEQLAKMLGHSADETIGVVHLVLRRLLQEQHQLSSRRLLNFDTELSTKEMRNNWEKEIAAVISPELEHLDKTLPTMNNLISQDKRISSNPVAKIIYGDPVTFLPHLPRKSVVHCSKIWSCRKRITVEYLQHIVEQKNGKERVPILWHFLQKEAELRLVKFLPEILALQRDLVKQFQNVQQVEYSSIRGFLSKHSSDGLRQLLHNRITVFLSTWNKLRRSLETNGEINLPKDYCSTDLDLDTEFEILLPRRRGLGLCATALVSYLIRLHNEIVYAVEKLSKENNSYSVDAAEVTELHVISYEVERDLTPLILSNCQYQVEEGRETVQEFDLEKIQRQIVSRFLQGKPRLSLKGIPTLVYRHDWNYEHLFMDIKNKMAQDSLPSSVISAISGQLQSYSDACEVLSVVEVTLGFLSTAGGDPNMQLNVYTQDILQMGDQTIHVLKALNRCQLKHTIALWQFLSAHKSEQLLRLHKEPFGEISSRYKADLSPENAKLLSTFLNQTGLDAFLLELHEMIILKLKNPQTQTEERFRPQWSLRDTLVSYMQTKESEILPEMASQFPEEILLASCVSVWKTAAVLKWNREMR", "sequence_length": 5207, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "9cef140f994aae9c50e9f45b9dc8638c6accc465e77a2d80aab56ec4204f091f", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q63HN8.json", "taxon_id": "9606", "uniprot_accession": "Q63HN8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/znf-rz-type-pf20173.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20173", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/znf-rz-type-pf20173.yaml" } ], "pfam_ids": [ "PF13086", "PF13087", "PF20173", "PF25396" ], "protein_name": "NFX1-type zinc finger-containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEDRRPHLEARPRNPPANHRGPMDGELPPRARNQTNNPAATNHAGRHLRASNHPAPFRQREERFRAMGRNPHQGRRNQEGHTSDEARDQRQSQNDTRRRNDDQEGRSHRPPWSSDTFQQWHTPPQKPGEQPQQTKRLGYKFLESLLQKEPSEVAITLATSLGLKELLSHSSMKPSFLQLICQVLRKACSSRIDRQSILHVLGILNNSKFLRVCLPAYVVGMITEPSPDIRNQYPEHISNIISLLQDLVSVFPASSMQETSMLISLLPTSLNALRASGVDIEEETEKNLEKVQAIIKYLQEKRRQGSLRVDTYTLVQAEAEGEVESYRAMPIYPTYNEVHLDEKPFLRPNIISGKYESTAVYLDTHFRLLREDFVRPLREGILKLLQSFEDQCLRKRKFDDIRIYFDARIITPMCSASGIVYKVQFDTKPLKLVRWQNSKRLLYGSLVCMSKDNFETFLFATVSNREHEDLCQGIVQLCFNEQSQQLLADVQPSDSFLMVETTAYFEAYRHVLEGLQEVQEEDVPFQRNIVQCDSYVRNPRYLLMGGRYDFTPLMENPSAMRKSLRGAEALRHPRINVFDFGQWPSKEALKLDDSQMEALQFALTKELAIIQGPPGTGKTYVGLKIVQALLTNKSVWQINTQTFPILVVCYTNHALDQFLEGIYGCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRTLPMHLRRAYMSIVTEMKESEQKLQEGAQTLECTMHGVLREQHLEKYISAQHWESLMSGPVQDADWVCVQPSKHSMILEWLGLGVGSFTQSASPAGPENTAQAEGEEEEEGEEEGSLIEIAEEADLIQADRVIEEEEVVRPRRRKKEENGTDQELAKMLLAMRLDQEVPGTTAGPEQATEEWETQRGQKKKMKRRVKVELRKLNTMTKAEANGIQDVWQLDLSSRWQLYRLWLQMYQADTRRRILSYERQYRTWAERMAELRLQEDLHILKDAEVVGMTTTGAAKYRQILQQVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTPHIYQDLENHPSVLKYEQIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCQYLLCQEYLPSQITILTTYTGQLFCLRKLMPVKTFAGIKVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALSRAKKGMYCIGNMQMLAKVPLWSRIIHTLRENNQIGPSLRLCCQNHPETHTLVSKASDFQKVPEGGCSRPCEFRLACGHVCTRACHPYDSSHKEFQCMKPCQKVLCQDGHRCPNVCFQECQPCQVKVPKIILKCGHKQMVPCSMSESEFCCQEPCSKILRCGHRCSHLCGEDCVRLCSERVTVELKCGHSQLVKCGNVEDIKYGLPVKCTTKCDTTLDCGHPCPGSCHSCFEGRFHERCQQPCKRLLICSHKCQEPCTGECPPCQRTCQNRCVHSQCKKKCGELCSPCVEPCVWRCQHYQCTKLCSEPCNRPPCYVPCTKLLACGHPCIGLCGEPCPKKCRVCQPDEVTQIFFGFEDEPDARFVQLEDCSHIFEVQALDRFMNEQKDDEVAIKLKVCPICQVPIRKNLRYGTSIKQRLEEIEIVKEKIQGSAGEISTSQEQLKALLKSKTLFHQLRPEEFLILQEKLAQKNLSVKDLGLVENSIRFYDHLANLEGSLEKVHCGEQQSVRTRLEQVHEWLAKKRLSFSSQELSDLQSEIQRLTYLVNLLMRCKMAEKVKGSIAEEVSSIRNILEKTSKFTQEDEQLVQKKMDALKTTLPCSGLGISDEERVQIVTAMGVPRGHWFKCPNGHIYVITECGGAMQRSTCPECQEVIGGENHTLERSNHLASEMDGAQHPAWSNTANNFMNFEEIHRMM", "sequence_length": 1909, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a379b7e9f3326910e38d74f54d38f83ea405daa12fc972159d6ac5581d12af3b", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8R151.json", "taxon_id": "10090", "uniprot_accession": "Q8R151", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/znf-rz-type-pf20173.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20173", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/znf-rz-type-pf20173.yaml" } ], "pfam_ids": [ "PF13086", "PF13087", "PF20173", "PF25396" ], "protein_name": "NFX1-type zinc finger-containing protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEERRPHLDARPRNSHTNHRGPVDGELPPRARNQANNPPANALRGGASHPGRHPRANNHPAAYWQREERFRAMGRNPHQGRRNQEGHASDEARDQRHDQENDTRWRNGNQDCRNRRPPWSNDNFQQWRTPHQKPTEQPQQAKKLGYKFLESLLQKDPSEVVITLATSLGLKELLSHSSMKSNFLELICQVLRKACSSKMDRQSVLHVLGILKNSKFLKVCLPAYVVGMITEPIPDIRNQYPEHISNIISLLQDLVSVFPASSVQETSMLVSLLPTSLNALRASGVDIEEETEKNLEKVQTIIEHLQEKRREGTLRVDTYTLVQPEAEDHVESYRTMPIYPTYNEVHLDERPFLRPNIISGKYDSTAIYLDTHFRLLREDFVRPLREGILELLQSFEDQGLRKRKFDDIRIYFDTRIITPMCSSSGIVYKVQFDTKPLKFVRWQNSKRLLYGSLVCMSKDNFETFLFATVSNREQEDLCRGIVQLCFNEQSQQLLAEVQPSDSFLMVETTAYFEAYRHVLEGLQEVQEEDVPFQRNIVECNSHVKEPRYLLMGGRYDFTPLIENPSATGEFLRNVEGLRHPRINVLDPGQWPSKEALKLDDSQMEALQFALTRELAIIQGPPGTGKTYVGLKIVQALLTNESVWQISLQKFPILVVCYTNHALDQFLEGIYNCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRNLPMHLRRAYMSIMTQMKESEQELHEGAKTLECTMRGVLREQYLQKYISPQHWESLMNGPVQDSEWICFQHWKHSMMLEWLGLGVGSFTQSVSPAGPENTAQAEGDEEEEGEEESSLIEIAEEADLIQADRVIEEEEVVRPQRRKKEESGADQELAKMLLAMRLDHCGTGTAAGQEQATGEWQTQRNQKKKMKKRVKDELRKLNTMTAAEANEIEDVWQLDLSSRWQLYRLWLQLYQADTRRKILSYERQYRTSAERMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQDLENHPSVLKYEKIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLRENNQIGPMLRLCCQNHPETHTLVSKASDFQKVPEGGCSLPCEFRLGCGHVCTRACHPYDSSHKEFQCMKPCQKVICQEGHRCPLVCFQECQPCQVKVPKTIPRCGHEQMVPCSVPESDFCCQEPCSKSLRCGHRCSHPCGEDCVQLCSEMVTIKLKCGHSQPVKCGHVEGLLYGGLLVKCTTKCGTILDCGHPCPGSCHSCFEGRFHERCQQPCKRLLICSHKCQEPCIGECPPCQRTCQNRCVHSQCKKKCGELCSPCVEPCVWRCQHYQCTKLCSEPCNRPPCYVPCTKLLVCGHPCIGLCGEPCPKKCRICHMDEVTQIFFGFEDEPDARFVQLEDCSHIFEVQALDRYMNEQKDDEVAIRLKVCPICQVPIRKNLRYGTSIKQRLEEIEIIKEKIQGSAGEIATSQERLKALLERKSLLHQLLPEDFLMLKEKLAQKNLSVKDLGLVENYISFYDHLASLWDSLKKMHVLEEKRVRTRLEQVHEWLAKKRLSFTSQELSDLRSEIQRLTYLVNLLTRYKIAEKKVKDSIAVEVYSVQNILEKTCKFTQEDEQLVQEKMEALKATLPCSGLGISEEERVQIVSAIGYPRGHWFKCRNGHIYVIGDCGGAMERGTCPDCKEVIGGTNHTLERSNQLASEMDGAQHAAWSDTANNLMNFEEIQGMM", 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"MVLTIYPDELVQIVSDKIASNKGKITLNQLWDISGKYFDLSDKKVKQFVLSCVILKKDIEVYCDGAITTKNVTDIIGDANHSYSVGITEDSLWTLLTGYTKKESTIGNSAFELLLEVAKSGEKGINTMDLAQVTGQDPRSVTGRIKKINHLLTSSQLIYKGHVVKQLKLKKFSHDGVDSNPYINIRDHLATIVEVVKRSKNGIRQIIDLKRELKFDKEKRLSKAFIAAIAWLDEKEYLKKVLVVSPKNPAIKIRCVKYVKDIPDSKGSPSFEYDSNSADEDSVSDSKAAFEDEDLVEGLDNFNATDLLQNQGLVMEEKEDAVKNEVLLNRFYPLQNQTYDIADKSGLKGISTMDVVNRITGKEFQRAFTKSSEYYLESVDKQKENTGGYRLFRIYDFEGKKKFFRLFTAQNFQKLTNAEDEISVPKGFDELGKSRTDLKTLNEDNFVALNNTVRFTTDSDGQDIFFWHGELKIPPNSKKTPNKNKRKRQVKNSTNASVAGNISNPKRIKLEQHVSTAQEPKSAEDSPSSNGGTVVKGKVVNFGGFSARSLRSLQRQRAILKVMNTIGGVAYLREQFYESVSKYMGSTTTLDKKTVRGDVDLMVESEKLGARTEPVSGRKIIFLPTVGEDAIQRYILKEKDSKKATFTDVIHDTEIYFFDQTEKNRFHRGKKSVERIRKFQNRQKNAKIKASDDAISKKSTSVNVSDGKIKRRDKKVSAGRTTVVVENTKEDKTVYHAGTKDGVQALIRAVVVTKSIKNEIMWDKITKLFPNNSLDNLKKKWTARRVRMGHSGWRAYVDKWKKMLVLAIKSEKISLRDVEELDLIKLLDIWTSFDEKEIKRPLFLYKNYEENRKKFTLVRDDTLTHSGNDLAMSSMIQREISSLKKTYTRKISASTKDLSKSQSDDYIRTVIRSILIESPSTTRNEIEALKNVGNESIDNVIMDMAKEKQIYLHGSKLECTDTLPDILENRGNYKDFGVAFQYRCKVNELLEAGNAIVINQEPSDISSWVLIDLISGELLNMDVIPMVRNVRPLTYTSRRFEIRTLTPPLIIYANSQTKLNTARKSAVKVPLGKPFSRLWVNGSGSIRPNIWKQVVTMVVNEIIFHPGITLSRLQSRCREVLSLHEISEICKWLLERQVLITTDFDGYWVNHNWYSIYEST", "sequence_length": 1160, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "56b259b93db59ceac986c9eb16ea5a60106e59d89bb78f09a7bb3a04fa666387", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P34111.json", "taxon_id": "559292", "uniprot_accession": "P34111", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf6581-pf20222.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20222", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf6581-pf20222.yaml" } ], "pfam_ids": [ "PF04182", "PF20222", "PF21552" ], "protein_name": "Transcription factor tau subunit sfc3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSLIRHCSEEIALDGSSGCSIDRLWEFAANFFFRQGIVQNLDDNYKTFVWPLILKEDGIEVWIEDEDATGLRSKMQEIPWNYQDITIELRARIRLFASEDRQWLTLTYKTKTDSKIQPLAFELLSCISRYRQEGVDRIQLCKETKQEPRSVYGRIQALEDASLISKVAINRSRAQTALLVLKRFESENSTINETVAQVSGKQIYNTEKIRSNICDAVQSSRNGICRHVDARAMVNLNHSRWERRYYARQVTYLHNNGYLRKCLTFVPNSPERCIRCLQFIKPYISSLDATEDDVDFTEVDDIPEDDELEEEEPLLPSKEEFDASFLQPLADVGPTLPQWSRFRPLEFQCFVLIRNAGFHGVITLQILSGLTGIRFNKPLFKLLGSLVEHRSSVPNHLSHMSITRFEDKTKKSRQYRYFTLQSQLNRLIRDGIPAETISKLLPHVHSLAGEFSPIDSSLFLNSLHHKGNMESNAEVSPDGMTLLPRKRGRPRKSANISVTSSPIRPSKNENNLPSLAISPVSEGFIQNATISTPSTSSNLSIAGSLTPSKTSRIYRGLAPLKNPEFNEDHVKKAEHLEPLLNVSSSVPSKNFTVSSPDHLKYGNTSSLQVSDSQSSIDLDSSFHYPVSVDSQLSHSTGSLMANFSSPTKKRRLESVDFIFLQRKGLILSYLVEQNGAFEISRKMFEDLADLKVRRNPETSRTVMDRRTFQQTLEKLMQEKKVRKLVIATNNGLGKLVRKDIVVQYDMKPDSPRFQQLRAQITTPEIEKQSTPEILKDVDVDFLKRNTSLSRRKSMPAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKSPVEKPKKLRKDRYASVEEFDYFSSTEHASKRSVKRFKNDFTSDEDETLIRAVVITQIYYGGTNRLIKWEAVQKCFPNRDIYALTRRYLSIRQHTKFKGLQQFLSENWQQMYKDAVSRKDLMPYPDSVDDFDPTPYVKASCRPYMISSSNLATTRLPRDLVDVYETYNIEVVKQETNFREMIFDPSLSVASKMNAYCDMPFTMPLSLNDKQNNEGDENCEKGQLFDAKSTIKSIVAIPDATYDARFSQERLMQYPEDILIAAHQELLDKRIITRVNSENSRLQPGRNFQFTEKFASSLKSPLPPFLLSQAKRFNKFLLEGFQNHKNHLFEETSNSGTLACILDLLSQGKLQISIVGSKFNEYGLSEGYRTRLLEHDNINVTLVLSGKESESKKNYGVTEKLATPPSHEPRLWLNGKCELIEMIWMNIEQSIVYQLLRKPGILRSQLTNLLFPGLEPREFNEVLDYFIAAGAAIEKDGLYLNHNYLFKLT", "sequence_length": 1339, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b5b99d7253a62b4b14f52e61de6334d5e9945145d7719d98c6f1bd8dc402d411", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UST7.json", "taxon_id": "284812", "uniprot_accession": "Q9UST7", "uniprot_release": "2026_03" } ], "pfam_id": "PF20222", "short_name": "DUF6581", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20223", "short_name": "DUF6582", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20224", "short_name": "DUF6583", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20225", "short_name": "DUF6584", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20226", "short_name": "DUF6585", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20227", "short_name": "DUF6586", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20228", "short_name": "DUF6587", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20230", "short_name": "DUF6588", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20231", "short_name": "DUF6589", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20233", "short_name": "DUF6590", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20234", "short_name": "DUF6591", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/ring-finger-hc-subclass-found-in-arabidopsis-thaliana-mnd1-interacting-cd23128.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd23128", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/ring-finger-hc-subclass-found-in-arabidopsis-thaliana-mnd1-interacting-cd23128.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pir2-like-helical-domain-ipr046527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pir2-like-helical-domain-ipr046527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pir2-like-helical-pf20235.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20235", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pir2-like-helical-pf20235.yaml" } ], "pfam_ids": [ "PF13920", "PF20235" ], "protein_name": "Putative E3 ubiquitin-protein ligase RF298", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVEKQEEMNEFGAVNGGKVGTSSSVSPPQDKGRKNKRKLADPSPQNAASLTEFPRYELHSFKSQSPLCENDSNGQLKAEESDSVGWDDPFACHLEGLLSSNLLTLFRSAMNQIMDCGYSEDVVLKAISSSRFYCGGTDLVSNIVNDTLSFLKSGKKVAGSRDYVFEDLQQLVAYSLVEKISLVREVRPSLSTDEAMWRLLICDLNVLKAFEVDADGLEGSSVSNASKSSESPVAECNPPKSSDADNPKAPVSNTQSKQSEPVKFGNFANVNNSKNPHASGATPGKEVFSVSTASGEGTKSASLTSVSDEKLVSCRKGRTKKEMAMLRQKSCVEKIRTYSKGGGYKTAKFGGFLVEKRGKSASDLLSAQARNSSSKITTEVMKIPLAESSSTLSNSTKSDSPALDVKEHVTALPANNAPAPVASEKKSGSEPEEKPSVSTKPAPDYYAAIPYDATLGIYIPRNKRDELILKLVPRMKDLQKELQDWTDWANQKVKQATVRLLKDQPELKALRKEKEEAEEFRKEKQLLEENTIKRRSEMELALNNATNQLERTNNTIRRLELEQSLLKREREAANIRASESAESCREAKERVQRLLKNSQSWEGQKNLLQEELKSQRDKVAGLQQEVAKAKTRQNQIEATWKQEKSATGKLTAQAAALKKERGKLEELGKAEEERIKTKAENDVKYYIENIKRLDTEISKLKLKSDSLKIAALKKGIDGNNDGNKSGMNHTTNTKANSMASAKVWENNQGAESKIKRERECVMCLSEEMSVIFLPCAHQVLCSKCNQLHEKEAMEDCPSCRAKIQRRIQARFARG", "sequence_length": 814, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8ba2432254d24bbecf504e59322b7fe901f7e0c5e97affa3d47a7c4d806fa44d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0WPJ7.json", "taxon_id": "3702", "uniprot_accession": "Q0WPJ7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/ring-finger-hc-subclass-found-in-arabidopsis-thaliana-mnd1-interacting-cd23128.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd23128", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/ring-finger-hc-subclass-found-in-arabidopsis-thaliana-mnd1-interacting-cd23128.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pir2-like-helical-domain-ipr046527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pir2-like-helical-domain-ipr046527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pir2-like-helical-pf20235.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20235", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pir2-like-helical-pf20235.yaml" } ], "pfam_ids": [ "PF13920", "PF20235" ], "protein_name": "MND1-interacting protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGCTVREKHVKPTRRIKAAAFRSDPPLCWVEKIAMSQSIVENLVYHPGLTDSGSVNLNSVTENPEENFWAYCTEEHLEEILLKHLEFLYNQAVSKLLELGYEERVALKAVLSNGHCYGELDVLTNIVNNSLSYLNSGGGGGGSNGNGEDRTETGFTDLRDLEEYSLAGMIYLLQQVKPNLSKGDAMWCLLMSELHVGRASTLDVPTNRSSCCTKEDSNVEDVGTGGTLDIAGFMAPALCRFHGGWGFGNGGGPEFSGNGFSMKGAELKLQREIDCPKRFNLSPSMKSLLKRNVAAFAAGYRASMKQKQIQSSDTIGDSKACNDPAIVKSCGQQPRKSGSEESVSTVLEKFRDLNLDDNLESVGVDDKDCVIVDLLHQVKDFEKKVKERKEWAQKNAMQAAQKVSEELAELKTLSSEREGIQLLKKGKQAVEESTAKRFTDKEIELRKACSQNDRANVIVRKLENQNAEIRAEREGSKLSASESLKACMEASKKEKKCLKKLVAWEKQILKLQDEITAEKEKIKALYKTLAQITEYEKEIEAKWRQEQKAKEEALAQMEEEQRSKEAAEGHNKRKLETLRLKIELDFQRHKDDHQRLEQELGRLKASSDSDSSHISNNAWKPKKSQGENIAKLLEEIDKLEGSYDNEANYDRECIICMKDEVSVVFLPCAHQVVCGSCSDSFFASNNGGSKVTCPCCRGLVQQRIRIFGATS", "sequence_length": 711, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cc4a38051eb12685ab65725019e87881848f760322b733ed8835fe73d1f6f855", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8RX22.json", "taxon_id": "3702", "uniprot_accession": "Q8RX22", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/ring-finger-hc-subclass-found-in-arabidopsis-thaliana-mnd1-interacting-cd23128.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd23128", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/ring-finger-hc-subclass-found-in-arabidopsis-thaliana-mnd1-interacting-cd23128.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pir2-like-helical-domain-ipr046527.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046527", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pir2-like-helical-domain-ipr046527.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pir2-like-helical-pf20235.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20235", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pir2-like-helical-pf20235.yaml" } ], "pfam_ids": [ "PF13920", "PF20235" ], "protein_name": "Putative E3 ubiquitin-protein ligase RF4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSIVQKQEEMNGCGLNVDKVEAFTVSPQEKGRKNKRKLADPSQPNASSLTEFPPYELPSLKPQNHLSGNGSVGEVSNQLQVEVSESVEWDDPFACHLEELLSSNLLTLFLDTMKQLIDLGYTDDEVLKAVSRCRLYCGGNNLLSNIVNNTLSALKTGDEGAGSGDYVFEDLQQLVSYTLVEMISLIKEVRPSLSTVEAMWRLLMCDLNVLQAFEAEGDGLVSSSKLSDSESLGAESNPPKSSDPDNPKPPQSDPQSNRNEPLKFGNFPNTPNSKKTQSSGTTPGKEVCSGSTVSCQGMRSTSFTLVSDEKLVSCRKGRTKKEIAMLRQKSCVEKIRTYSKGSGYKAAKFASVGSFLLEKRVKSSSEFVPRNSSSKITAEIGVKVSLAEDSGCFVRKNSKLDSPVVVVDAKGYITALPARSVKSASKKKTGSESVTLIPSASEKKSDSSIPSTSEKKSGSESEEKASVSAKLAPDYYAGIPYDAALGIYVPRDKKDELILKLVPRVNDLQNELQVWTDWANQKVKEATGRLLKDQPELKALRKEREEAEQYKKEKQLLEENTRKRLSEMDFALKNATSQLEKAFNTAHRLELEQSILKKEMEAAKIKAVESAESFREAKERGERSLKDIHSWEGQKIMLQEELKGQREKVTVLQKEVTKAKNRQNQIEAALKQERTAKGKLSAQASLIRKETKELEALGKVEEERIKGKAETDVKYYIDNIKRLEREISELKLKSDYSRIIALKKGSSESKATKRESLGMPKVKRERECVMCLSEEMSVIFLPCAHQVLCFKCNQLHEKEGMMDCPSCRGTIHRRIQARFARSG", "sequence_length": 823, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e0daba6854e84da73fac401546ab3e1694630d48adb146576e124b35ca816cca", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZVT8.json", "taxon_id": "3702", "uniprot_accession": "Q9ZVT8", "uniprot_release": "2026_03" } ], "pfam_id": "PF20235", "short_name": "PIR2-like_helical", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20236", "short_name": "DUF6593", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20237", "short_name": "DUF6594", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cryptococcus neoformans (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bim1-like-dom-pf20238.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20238", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bim1-like-dom-pf20238.yaml" } ], "pfam_ids": [ "PF20238" ], "protein_name": "Copper acquisition factor BIM1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MFALKSILVTSLITSTALAHFTLDYPQSRGFVDDTENQFCGGFNTVEARQPFPLGSGPVHIDSHHALATIVAFISTSSNPTSFDDFNTTSNGTAIPLASSIFQVPQGEKCFNIDLQSLNVGLTNGSEVTLQIQYDGGDGNLYQCSDLVLIEGYEVPSNETCTNDASKASNATSTSSGSATATSAAATSSSSGTSGAIKEVVGFGALSLALGIAGLIIL", "sequence_length": 218, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e1166af0e50e07ab48a2095421d51f961f2827fa18bdbfb3ffe294fc514191d7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/J9VHN6.json", "taxon_id": "235443", "uniprot_accession": "J9VHN6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bim1-like-dom-pf20238.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20238", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bim1-like-dom-pf20238.yaml" } ], "pfam_ids": [ "PF20238" ], "protein_name": "Lytic polysaccharide monooxygenase-like protein ANIA_04702", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLMSTSPSPWLAAAMLCIGLANAHTVIVYPGYRGNNLHTTGTVEGADGLGIAWSSDNETLIYPYGMQWSYPCGGMPTSENRTKWPVQGGAVSFQPGWFQGHSRAQIYINIGLGTVPPNMSHPMITPFEIVGPDNDPYPGTICLPQVRLPAGIEVQVGDNATIQVIELAQHGAALYNCADITFAEPEDVAEVNSTNCFNSSHISFETIFTTSSLENAGLEAVTVPSFLTAVVPTFLGIAYGLLMA", "sequence_length": 244, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a86b1a2d30fdb5551068529824780e1316a35163e73e36f3863728b3cb6f5698", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5B428.json", "taxon_id": "227321", "uniprot_accession": "Q5B428", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/bim1-like-dom-pf20238.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20238", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/bim1-like-dom-pf20238.yaml" } ], "pfam_ids": [ "PF20238" ], "protein_name": "Lytic polysaccharide monooxygenase-like protein ham-7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLTSTLLALASAALASAHTVITYPGWRGNNLKDNEEFPYGMQWTYPCGGLTLTQNRTYWPTTGGAISFQPGWFQGHATAFIYVNLGIGNDGPDGGPKNMSFPMVSPFQIIGPGKNPYPGTFCLPQVSTPAGFEFKEGDNATIQLVELAIHGAALYSCVDITFVPPGDPRVAQVNESNCFNSTDLGAADLYTINILESGRDRLALTSAAASLARMAGWVPLVAGGLWLML", "sequence_length": 229, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4c498e7e09e70fada0249ec80d7aefc2e1f9d200a6aa3a8973c0acdbf2cb4c86", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/V5IRP6.json", "taxon_id": "367110", "uniprot_accession": "V5IRP6", "uniprot_release": "2026_03" } ], "pfam_id": "PF20238", "short_name": "BIM1-like_dom", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rhizobium meliloti (strain 1021)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf6596-pf20239.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20239", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf6596-pf20239.yaml" } ], "pfam_ids": [ "PF04542", "PF08281", "PF20239" ], "protein_name": "Uncharacterized protein R00370", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDTGWIDLALVSARPQAMGALLRYFRNLDLAEEAFQEACIRALKNWPRTGPPRDPAAWLIFVGRNSGIDKVRRQSRETALPPEELLSDLDDRESELADRLDGAHYRDDILRLLFVCSNPALPATQQIALALRIVSGLSVRQIARAFLVSEAAMEQRITRAKARVAAAGIPFETPDAVDRAERLAAVATMIYLVFNEGYSAMNGPEGVSADLCDEAIRLSRLLLRLFPAEPEMMGLTALLLLQHSRARARFDANGAVVLLEDQDRRLWSRPMITEALAMIDKAMRHRRPGPYQIQAAIAALHARAERPEQTDWEEIDLLYQALERLQPSPVVTLNRAVAVSKREGPEAALAMVEPLGERLSGYFYYHGLRGGLLKQLGRACEARTAFDRAIALATNASEAAYIRMQLDHLAAEPATVAEEEKR", "sequence_length": 423, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8809e6ad8bced8a8ca7285eb8a3b6cbd6b79c0c4fb0d2ba2cd079df95fa59d93", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q52997.json", "taxon_id": "266834", "uniprot_accession": "Q52997", "uniprot_release": "2026_03" } ], "pfam_id": "PF20239", "short_name": "DUF6596", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces lavendulae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6597-pf20240.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20240", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6597-pf20240.yaml" } ], "pfam_ids": [ "PF12833", "PF20240" ], "protein_name": "Uncharacterized HTH-type transcriptional regulator in mcrB 3'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRPCGSVCQHRHFRHAACGTQPLPWRTTAPEPGAPPHEHLSARRKIHSVSPEYEERTSRLPGAIGWVQGAPGCTGGGETTTVLPDGCIDLLWTAGRLLVSGPDTSAYSTHRGFWVGVRFSPGIAPALLGIPAHELRDQRVDLADLWPGAGTRRLTERVDGGGRTRPPPSRIWHCGVAADAEPVDPLLRAVVVSLEAGRSVTATADSVGLGARQLHRRSLAAFGYGPKTLARVLRMQRALRLARAGVPFAETATLAGFADQAHLARDVREMAGSSLSELVER", "sequence_length": 281, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4620ffda476103d3d430c45359f7ef44024f815940783c1b17f2964533f16e31", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P43458.json", "taxon_id": "1914", "uniprot_accession": "P43458", "uniprot_release": "2026_03" } ], "pfam_id": "PF20240", "short_name": "DUF6597", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Hordeum vulgare", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6598-pf20241.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20241", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6598-pf20241.yaml" } ], "pfam_ids": [ "PF00161", "PF20241" ], "protein_name": "60 kDa jasmonate-induced protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALDKVAPIVIVTPFNVMTDRYDEFIEKVRKALAGTAGAKVGPKPKSKVESPVLDKGTFPVEQPPRWIHVELHGKTQGTTTPKPKVAIRSDDAYIMGFTNSTGRWFQLSKTGTTYKLVDDKAVMAGFDGNYNTLVGGVNNLPTLNLNKFSMAQAAAALWNKASTLSGGIGSDVVDDDDGDMLRANDPVKQAVATLAVAVCEAARFSPVSKVVNAGWIKDKVSVTPDEVNYIKEWGDLSTALLSWMDKQYKDDATIFKKFNGIGITNGEEALAVVRLVKLVIRSNMAAAPTTDEQLLAYAQLPKHGRYMAEVFAVRIPATAGGDRPAAPSLCTAATAAATSFTARKKNTPRSKPAATARVTWSSLGHRLATSAYGPIVFNLDLHDGNCGQADEEEDEKNTGRIVCDAIGGDFSNYNKAISETVLTRCGPAEVIYAVLSNGVQGRVDVKLAGLQSRDEVVLVGRIVARSKLFDFGCVLFYNEAAGVRVRPGELVPLARHALAVPLHMPLTIELDIRHGGSGDEIVRGELEFKTAIDGLHTGRLVGVNDAEFEVTILWSEYPW", "sequence_length": 560, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bf63d419083f310b2de0cd5747cdaf60f860e8485827afcbfdc57f4658a52c97", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q00531.json", "taxon_id": "4513", "uniprot_accession": "Q00531", "uniprot_release": "2026_03" } ], "pfam_id": "PF20241", "short_name": "DUF6598", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20244", "short_name": "DUF6599", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20245", "short_name": "DUF6600", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20246", "short_name": "DUF6601", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain MS 115-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6602-pf20247.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20247", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6602-pf20247.yaml" } ], "pfam_ids": [ "PF20247" ], "protein_name": "Endodeoxyribonuclease NucC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDWSLSQLFASLHEDIQLRLGTARKAFQHPGAKGDASEGVWIEMLDTYLPKRYQAANAFVVDSLGNFSDQIDVVVFDRQYSPFIFKFNEQIIVPAESVYAVFEAKQSASADLVAYAQRKVASVRRLHRTSLPIPHAGGTYPAKPLIPILGGLLTFESDWSPALGMSFDKALNGDLSDGRLDMGCVASHGHFYFNNIDSKFNFEHGNKPATAFLFRLIAQLQFSGTVPMIDIDAYGKWLAN", "sequence_length": 241, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d96f371fabfef50c70d0efb08b8c705949b593183c46764fd17052fc58afdbdc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D7Y2H5.json", "taxon_id": "749537", "uniprot_accession": "D7Y2H5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas aeruginosa", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6602-pf20247.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20247", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6602-pf20247.yaml" } ], "pfam_ids": [ "PF20247" ], "protein_name": "Endodeoxyribonuclease NucC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQWSLSQLLSSLHEDIQQRLSVVRKTFGHPGTKGDASENVWIDMLDTYLPKRYQAAKAHVVDSLGNFSQQIDVVVFDRQYSPFIFTYENETIIPAESVYAVFEAKQTADAGLVAYAQEKVASVRRLHRTSLPIPHAGGTYPAKPLIPILGGLLTFESEWSPALGPSMDKALNANLTEGRLDIGCVAAHGHFFYDQASGAYSYTNENKPATAFLFKLIAQLQFSGTVPMIDVEAYGQWLTK", "sequence_length": 241, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0eb80c4859436a0455f30ee55ebba7721b046eb97fda5daf3a0683478c55b277", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DTF8.json", "taxon_id": "287", "uniprot_accession": "P0DTF8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Vibrio metoecus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6602-pf20247.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20247", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6602-pf20247.yaml" } ], "pfam_ids": [ "PF20247" ], "protein_name": "CRISPR-associated endodeoxyribonuclease NucC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAQDWQLSELLENLHADVQHKLTTVRKSFKHSVVKGDGAENVWVDLFNQYLPERYRASRAFVVDSENQFSEQIDVVIYDRQYSPFIFHYAEQLIIPAESVYAVFEVKQTLNKQHIDAARKKVASVRALHRTSLPIPHAGGVHSPRELIGIIGGLLTLENELKIPDTLMGHLDHDKADKGMLNIGCAADDCFFYYDNDHQRMQVMQHKKATTAFLFELLSQLQKCGTVPMIDIHAYGKWLTPRISE", "sequence_length": 245, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "53f8f0e5f9a875bd353c5f1b7a032280ded1a851242d26107d6d006a86c350b7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DUD6.json", "taxon_id": "1481663", "uniprot_accession": "P0DUD6", "uniprot_release": "2026_03" } ], "pfam_id": "PF20247", "short_name": "DUF6602", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20248", "short_name": "DUF6603", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20253", "short_name": "DUF6604", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Paracoccus aminophilus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dmfa2-c-pf20254.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dmfa2-c-pf20254.yaml" } ], "pfam_ids": [ "PF20254" ], "protein_name": "N,N-dimethylformamidase beta subunit", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTVKIRGYCDRLSAAPGETIRFYVSADTSDGSYEAELVRLIHGDTNPAGPGYKEESVKSAADGSYPARFQRTQFGSFVEVPDASGALLADGAFSVHTFLWSTTPGRGRQGLVSRWDDERQCGWSLAIEEGRLVFTIGDESGTTNRVISDRPLFQEVWYSVTAVFDPVQKTISLHQKSVVNRTNSRFGLVVPLDSDTTVSAVSQVSPGDSRTSLLIAGLGEAAAADGRTWCIANFNGKIDAPKLYGRALSSEEAMKLAEGTVAEPWSRLAHWDFSAGIGPDGIPTDHVVDISGNGHHGQCVNQPDRGSTGWNWDGHEENFIHCPQQYGALWFHEDCLDDCRWDKDFEITLPDGLKSDFYAMKIRYGDSEDYIPFFVLPPRGKATAKILVLASTFSYLAYANEQIMHKADIGQAVAGHTPVLNENDVELHRNLDYYGLSTYDGHVDGRGVQYTSWRRPILNLRPKHRQGFGSIWELPADLHLIDWLNHNGFDYDVATEHDLNEQGVDLLRRYNVVLTGSHPEYQTWANADAWEDYLADGGRGMYLAANGMYWIVSVHPEKPWVMEVRKELGVTAWEAPPGEYHYSTNGRRGGRFRGRARATQKIWGTGMSSFGFDHSGYFVQMPDSQDKRAAWIMDGIDPDERIGDGGLVGGGAGGYELDRYDLSLGTPPNTLLLASSVEHSVVYTVIPDDKSFPHPGMNGGEHPFVRADITYFSTANGGGMFSTSSISWLGSLSWNNYDNNVSRMTRNVLTQFMKDEPAPLV", "sequence_length": 762, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2f028a2d8df249eb0425e0975e609b9aebc8dd9c9369b8ee349e39abec5c2ea3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C9DQ21.json", "taxon_id": "34003", "uniprot_accession": "C9DQ21", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Alcaligenes sp", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dmfa2-c-pf20254.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20254", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dmfa2-c-pf20254.yaml" } ], "pfam_ids": [ "PF07953", "PF20254" ], "protein_name": "N,N-dimethylformamidase beta subunit", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"MAKQRQTTKSSKRYRYSSFKARIDDLKIEPARNLEKRVHDYVESSHFLASFDQWKEINLSAKFTEFAAEIEHDVQTLPQILYHDKKIFNSLVSFINFHDEFSLQPLLDLLAQFCHDLGPDFLKFYEEAIKTLINLLDAAIEFESSNVFEWGFNCLAYIFKYLSKFLVKKLVLTCDLLIPLLSHSKEYLSRFSAEALSFLVRKCPVSNLREFVRSVFEKLEGDDEQTNLYEGLLILFTESMTSTQETLHSKAKAIMSVLLHEALTKSSPERSVSLLSDIWMNISKYASIESLLPVYEVMYQDFNDSLDATNIDRILKVLTTIVFSESGRKIPDWNKITILIERIMSQSENCASLSQDKVAFLFALFIRNSDVKTLTLFHQKLFNYALTNISDCFLEFFQFALRLSYERVFSFNGLKFLQLFLKKNWQSQGKKIALFFLEVDDKPELQKVREVNFPEEFILSIRDFFVTAEINDSNDLFEIYWRAIIFKYSKLQNTEIIIPLLERIFSTFASPDNFTKDMVGTLLKIYRKEDDASGNNLLKTILDNYENYKESLNFLRGWNKLVSNLHPSESLKGLMSHYPSLLLSLTDNFMLPDGKIRYETLELMKTLMILQGMQVPDLLSSCMVIEEIPLTLQNARDLTIRIKNVGAEFGKTKTDKLVSSFFLKYLFGLLTVRFSPVWTGVFDTLPNVYTKDEALVWKLVLSFIKLPDENQNLDYYQPLLEDGANKVLWDSSVVRLRDTIDTFSHIWSKYSTQNTSIISTTIERRGNTTYPILIRNQALKVMLSIPQVAENHFVDIAPFVYNDFKTYKDEEDMENERVITGSWTEVDRNVFLKTLSKFKNIKNVYSATELHDHLMVLLGSRNTDVQKLALDALLAYKNPTLNKYRDNLKNLLDDTLFKDEITTFLTENGSQSIKAEDEKVVMPYVLRIFFGRAQVPPTSGQKRSRKIAVISVLPNFKKPYINDFLSLASERLDYNYFFGNSHQINSSKATLKTIRRMTGFVNIVNSTLSVLRTNFPLHTNSVLQPLIYSIAMAYYVLDTESTEEVHLRKMASNLRQQGLKCLSSVFEFVGNTFDWSTSMEDIYAVVVKPRISHFSDENLQQPSSLLRLFLYWAHNPSLYQFLYYDEFATATALMDTISNQHVKEAVIGPIIEAADSIIRNPVNDDHYVDLVTLICTSCLKILPSLYVKLSDSNSISTFLNLLVSITEMGFIQDDHVRSRLISSLISILKGKLKKLQENDTQKILKILKLIVFNYNCSWSDIEELYTTISSLFKTFDERNLRVSLTELFIELGRKVPELESISKLVADLNSYSSSRMHEYDFPRILSTFKGLIEDGYKSYSELEWLPLLFTFLHFINNKEELALRTNASHAIMKFIDFINEKPNLNEASKSISMLKDILLPNIRIGLRDSLEEVQSEYVSVLSYMVKNTKYFTDFEDMAILLYNGDEEADFFTNVNHIQLHRRQRAIKRLGEHAHQLKDNSISHYLIPMIEHYVFSDDERYRNIGNETQIAIGGLAQHMSWNQYKALLRRYISMLKTKPNQMKQAVQLIVQLSVPLRETLRIVRDGAESKLTLSKFPSNLDEPSNFIKQELYPTLSKILGTRDDETIIERMPIAEALVNIVLGLTNDDITNFLPSILTNICQVLRSKSEELRDAVRVTLGKISIILGAEYLVFVIKELMATLKRGSQIHVLSYTVHYILKSMHGVLKHSDLDTSSSMIVKIIMENIFGFAGEEKDSENYHTKVKEIKSNKSYDAGEILASNISLTEFGTLLSPVKALLMVRINLRNQNKLSELLRRYLLGLNHNSDSESESILKFCHQLFQESEMSNSPQIPKKKVKDQVDEKEDFFLVNLESKSYTINSNSLLLNSTLQKFALDLLRNVITRHRSFLTVSHLEGFIPFLRDSLLSENEGVVISTLRILITLIRLDFSDESSEIFKNCARKVLNIIKVSPSTSSELCQMGLKFLSAFIRHTDSTLKDTALSYVLGRVLPDLNEPSRQGLAFNFLKALVSKHIMLPELYDIADTTREIMVTNHSKEIRDVSRSVYYQFLMEYDQSKGRLEKQFKFMVDNLQYPTESGRQSVMELINLIITKANPALLSKLSSSFFLALVNVSFNDDAPRCREMASVLISTMLPKLENKDLEIVEKYIAAWLKQVDNASFLNLGLRTYKVYLKSIGFEHTIELDELAIKRIRYILSDTSVGSEHQWDLVYSALNTFSSYMEATESVYKHGFKDIWDGIITCLLYPHSWVRQSAANLVHQLIANKDKLEISLTNLEIQTIATRILHQLGAPSIPENLANVSIKTLVNISILWKEQRTPFIMDVSKQTGEDLKYTTAIDYMVTRIGGIIRSDEHRMDSFMSKKACIQLLALLVQVLDEDEVIAEGEKILLPLYGYLETYYSRAVDEEQEELRTLSNECLKILEDKLQVSDFTKIYTAVKQTVLERRKERRSKRAILAVNAPQISADKKLRKHARSREKRKHEKDENGYYQRRNKRKRA", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/u3-small-nucleolar-rna-associated-protein-20-c-terminal-ipr057525.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/u3-small-nucleolar-rna-associated-protein-20-domain-ipr046523.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR046523", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/u3-small-nucleolar-rna-associated-protein-20-domain-ipr046523.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/utp20-pf20416.yaml" } ], "pfam_ids": [ "PF07539", "PF20416", "PF23099" ], "protein_name": "Small subunit processome component 20 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049288", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf447-c-terminal-domain-ipr049288.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf447-n-terminal-domain-ipr007386.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR007386", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf447-n-terminal-domain-ipr007386.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf447-c-pf20766.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20766", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf447-c-pf20766.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf447-n-pf04289.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF04289", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf447-n-pf04289.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/structure/homologous_superfamily/cath/hypothetical-membrane-protein-ta0354-69-121-1-20-58-290.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CATH:1.20.58.290", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/hypothetical-membrane-protein-ta0354-69-121-1-20-58-290.yaml" } ], "pfam_ids": [ "PF04289", "PF20766" ], "protein_name": "Uncharacterized protein MJ1453", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MISEVVVTTRKNNRDNKAPIGVYFKDKKVIMHLFSGSHTYENLLTEDYFSVNVVPPIEIAKAVLDDEDDYLYYNDIPYLKSSYYAIFYKVIERKFVDREDKFGKNRLMILEGEEIKRIYLNNIPKPYNRADGLLVEIAVIYSRLANKNIKINEDDKKEMINDIRKYFSIIKKVGGREHKQLAEIMLRNLNLL", "sequence_length": 192, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c676670047d54797ba33a37e5bbc10ec44369aa2430b51dc8547a33b493b0806", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58848.json", "taxon_id": "243232", "uniprot_accession": "Q58848", "uniprot_release": "2026_03" } ], "pfam_id": "PF20766", "short_name": "DUF447_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20767", "short_name": "DUF6839", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5575-c-terminal-domain-ipr049218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5575-c-terminal-domain-ipr049218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5575-n-terminal-domain-ipr049217.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5575-n-terminal-domain-ipr049217.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zswim9-central-rnaseh-like-domain-ipr048315.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048315", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zswim9-central-rnaseh-like-domain-ipr048315.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5575-c-pf20784.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20784", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-c-pf20784.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5575-n-pf20783.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20783", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-n-pf20783.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5575-pf17738.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-pf17738.yaml" } ], "pfam_ids": [ "PF17738", "PF20783", "PF20784" ], "protein_name": "Uncharacterized protein ZSWIM9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELTEPLPSAAVQKEEQELLDRTFFSWAEFSRFFDKWCQQRLVVFSVKSSTRVARSPWANTPPLYRLIHVLKYSYVLLVCKDVRMPNKSTAWPPQPSCPAFITVKLSPLRDRLVVTECQLTHSHPACPREFAYHFRPGHLLANSCLPVRITNQISKQFVAPADVRRLLTHCKGPDHGVLDALQVLEGLFRTDPEAKVKLVFVEDQAMVETVFLLTSRTRALLRRFPRILLVDRLPGLQGTLDLMAVLCVDSAGRARQAACCVARPGTPSLLRFMLVSLLQSAPDVKGRVRCLTAGPEVAGQLRAVRQLLPCARVQICRAQGLETLFSKAQELGGASQEDPDLWPLLCRLADSKSYTAYSEALAELRSQAPTAFIRYFEHNWAPRHDMWVRFRAYEATRDLDACALVRSHRRRLLRRLSPSHSVAQCLRDLVAMQWADATGEAALRGC", "sequence_length": 447, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "68824feb5a1f165301f806fb6ba817746c0af177e37f2dda6b1f7e0b2ad575a7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6DI92.json", "taxon_id": "10090", "uniprot_accession": "Q6DI92", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5575-c-terminal-domain-ipr049218.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049218", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5575-c-terminal-domain-ipr049218.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5575-n-terminal-domain-ipr049217.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049217", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5575-n-terminal-domain-ipr049217.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zswim9-central-rnaseh-like-domain-ipr048315.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048315", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zswim9-central-rnaseh-like-domain-ipr048315.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5575-c-pf20784.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20784", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-c-pf20784.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5575-n-pf20783.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20783", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-n-pf20783.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5575-pf17738.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-pf17738.yaml" } ], "pfam_ids": [ "PF17738", "PF20783", "PF20784" ], "protein_name": "Uncharacterized protein ZSWIM9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERPEPPPGTAAGQEEQELRERAFFSWAEFSRFFDAWCQQRLALFFVKSSMHLARCRWASAPPLYTLIDVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLRDRLVVTECQLTHSHPACPLEFAYYFRPGHLLANACLPVRTTNKISKQFVAPADVRRLLSYCKGRDHGVLDALHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLLVDRLPGLQGALDLLAVLCVDGSGRARQAACCVARPGTPSLLRFALASLLQSAPDVKGRVRCLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFSKAQELGGAGREDPGLWSRLCRLAGASSPAAYDEALAELHAHGPAAFVDYFERNWEPRRDMWVRFRAFEAARDLDACALVRGHRRRLLRRLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVRGLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIRDWRGGRLENQKPRGLEGGVLRGSKLEKGHLRGPEIRDWRGPQLEGEKDWGLEGYVWRGSQLEDQALRGLEGYTWRVAQLEDRRSTTDLRGTQFDYERGKGESTEDR", "sequence_length": 627, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5faa80147db0e6b8567804ee66d7d1ede11fe03aa04ec97166de0d53fd62ca06", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q86XI8.json", "taxon_id": "9606", "uniprot_accession": "Q86XI8", "uniprot_release": "2026_03" } ], "pfam_id": "PF20783", "short_name": "DUF5575_N", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-n-pf20783.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5575-pf17738.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-pf17738.yaml" } ], "pfam_ids": [ "PF17738", "PF20783", "PF20784" ], "protein_name": "Uncharacterized protein ZSWIM9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MELTEPLPSAAVQKEEQELLDRTFFSWAEFSRFFDKWCQQRLVVFSVKSSTRVARSPWANTPPLYRLIHVLKYSYVLLVCKDVRMPNKSTAWPPQPSCPAFITVKLSPLRDRLVVTECQLTHSHPACPREFAYHFRPGHLLANSCLPVRITNQISKQFVAPADVRRLLTHCKGPDHGVLDALQVLEGLFRTDPEAKVKLVFVEDQAMVETVFLLTSRTRALLRRFPRILLVDRLPGLQGTLDLMAVLCVDSAGRARQAACCVARPGTPSLLRFMLVSLLQSAPDVKGRVRCLTAGPEVAGQLRAVRQLLPCARVQICRAQGLETLFSKAQELGGASQEDPDLWPLLCRLADSKSYTAYSEALAELRSQAPTAFIRYFEHNWAPRHDMWVRFRAYEATRDLDACALVRSHRRRLLRRLSPSHSVAQCLRDLVAMQWADATGEAALRGC", "sequence_length": 447, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "68824feb5a1f165301f806fb6ba817746c0af177e37f2dda6b1f7e0b2ad575a7", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q6DI92.json", "taxon_id": "10090", "uniprot_accession": "Q6DI92", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5575-n-terminal-domain-ipr049217.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/zswim9-central-rnaseh-like-domain-ipr048315.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048315", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/zswim9-central-rnaseh-like-domain-ipr048315.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5575-c-pf20784.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20784", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-c-pf20784.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5575-n-pf20783.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20783", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-n-pf20783.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5575-pf17738.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17738", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5575-pf17738.yaml" } ], "pfam_ids": [ "PF17738", "PF20783", "PF20784" ], "protein_name": "Uncharacterized protein ZSWIM9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MERPEPPPGTAAGQEEQELRERAFFSWAEFSRFFDAWCQQRLALFFVKSSMHLARCRWASAPPLYTLIDVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLRDRLVVTECQLTHSHPACPLEFAYYFRPGHLLANACLPVRTTNKISKQFVAPADVRRLLSYCKGRDHGVLDALHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLLVDRLPGLQGALDLLAVLCVDGSGRARQAACCVARPGTPSLLRFALASLLQSAPDVKGRVRCLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFSKAQELGGAGREDPGLWSRLCRLAGASSPAAYDEALAELHAHGPAAFVDYFERNWEPRRDMWVRFRAFEAARDLDACALVRGHRRRLLRRLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVRGLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIRDWRGGRLENQKPRGLEGGVLRGSKLEKGHLRGPEIRDWRGPQLEGEKDWGLEGYVWRGSQLEDQALRGLEGYTWRVAQLEDRRSTTDLRGTQFDYERGKGESTEDR", "sequence_length": 627, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5faa80147db0e6b8567804ee66d7d1ede11fe03aa04ec97166de0d53fd62ca06", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q86XI8.json", "taxon_id": "9606", "uniprot_accession": "Q86XI8", "uniprot_release": "2026_03" } ], "pfam_id": "PF20784", "short_name": "DUF5575_C", 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5382-n-terminal-domain-ipr048313.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048313", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5382-n-terminal-domain-ipr048313.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5382-c-pf20839.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20839", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5382-c-pf20839.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5382-n-pf20840.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20840", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5382-n-pf20840.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5382-pf17354.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5382-pf17354.yaml" } ], "pfam_ids": [ "PF17354", "PF20839", "PF20840" ], "protein_name": "Uncharacterized protein B0228.9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQSVTPPPTQQGKPDPTNSDMMMKRFQEDMVGILDGRSRAHFDDLANYFHSKIRICTCFEPGRSLSVPEFQHVLTFISGYYQHLTEVRSDRWTDHPNYINGIFTYTAMGSDRKNSDGKWTYEASMDWNQNKFLIEYIWFPYNCSVFPVKDPSEPLEDVDNYLERVRTKLSSGLFLPDGVDQTLQNFEEFGDWITDDAIIVVCDEQKMDKNEFIKYMSTRYHHIRKYSNNQFDHVKNNQDFEITFSTTWTADNTTQFRDTYIFRVKKAEDYFPENDRLYLLWKIYWVTKRCTVDVTQYPAVLDGSVILGEVNKRFCGMIDGENWDVYQSFLDLFDPNDTKWGSCVGKREQKYDKIREYMNKVVARYAKCVVSEVRIRNLVHADFSTTFLLSRANEIQEQEELDVGFVGYKNKNGHWKINRMYFECEESKKRKFMDNLLNVRLKC", "sequence_length": 443, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "22c8375b73c92ab4ae5ed963941dc9a0a03bbc85b7f3313388911713f66816f3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q09439.json", "taxon_id": "6239", "uniprot_accession": "Q09439", "uniprot_release": "2026_03" } ], "pfam_id": "PF20839", "short_name": "DUF5382_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5382-central-domain-ipr035415.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035415", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5382-central-domain-ipr035415.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5382-n-terminal-domain-ipr048313.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048313", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5382-n-terminal-domain-ipr048313.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5382-n-pf20840.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20840", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5382-n-pf20840.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5382-pf17354.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5382-pf17354.yaml" } ], "pfam_ids": [ "PF17354", "PF20840" ], "protein_name": "Uncharacterized protein B0228.8", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRFTLFVFFLSISIAYADFDFEDYNFATFNEIYDNEIPDDIPSSRHFLKSSRGTVGLPKTATEMMTRFNENLLNFLKSKSENDWKLIMELMSPDAFIETCMESAYGLSMDQFHKWITFLSNYYAEVGLTSTKIKDNSETGVTTELVYYTVLRNGEKGSDKWAMSATLNKKKGHFCINTLHMLSECKNIPKKPSLEPAIPIETFISSLKKKLVNDIFLNGGLHYKSAYESMYNYITPATKVFICDVGKMNGNQFVEYWYKRFGKVQTYSEHVFDISNNGTNWHVDFEVTYESEPGKFYRDRYQFSMNKYTNVKVEYFENFLDWRIYQIQQNCTESRTKMSKSDASVVKMALASRRWDQMLNKGLSWDTLQAFKEMFDKSKFHGYTCGMKFENWAKFDNWLTGFSNFYAKSVPKQTNVYAYQDSKIGFWIVNTMSAASDNSTSTHRVFFEGYYVC", "sequence_length": 454, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "51564f8049d56d163f203e90b1083ed4c73105b1c969961c1293179608d5813b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q09224.json", "taxon_id": "6239", "uniprot_accession": "Q09224", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5382-c-terminal-domain-ipr048314.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048314", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5382-c-terminal-domain-ipr048314.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5382-central-domain-ipr035415.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR035415", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5382-central-domain-ipr035415.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5382-n-terminal-domain-ipr048313.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048313", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5382-n-terminal-domain-ipr048313.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5382-c-pf20839.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20839", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5382-c-pf20839.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5382-n-pf20840.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20840", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5382-n-pf20840.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5382-pf17354.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17354", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5382-pf17354.yaml" } ], "pfam_ids": [ "PF17354", "PF20839", "PF20840" ], "protein_name": "Uncharacterized protein B0228.9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQSVTPPPTQQGKPDPTNSDMMMKRFQEDMVGILDGRSRAHFDDLANYFHSKIRICTCFEPGRSLSVPEFQHVLTFISGYYQHLTEVRSDRWTDHPNYINGIFTYTAMGSDRKNSDGKWTYEASMDWNQNKFLIEYIWFPYNCSVFPVKDPSEPLEDVDNYLERVRTKLSSGLFLPDGVDQTLQNFEEFGDWITDDAIIVVCDEQKMDKNEFIKYMSTRYHHIRKYSNNQFDHVKNNQDFEITFSTTWTADNTTQFRDTYIFRVKKAEDYFPENDRLYLLWKIYWVTKRCTVDVTQYPAVLDGSVILGEVNKRFCGMIDGENWDVYQSFLDLFDPNDTKWGSCVGKREQKYDKIREYMNKVVARYAKCVVSEVRIRNLVHADFSTTFLLSRANEIQEQEELDVGFVGYKNKNGHWKINRMYFECEESKKRKFMDNLLNVRLKC", "sequence_length": 443, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "22c8375b73c92ab4ae5ed963941dc9a0a03bbc85b7f3313388911713f66816f3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q09439.json", "taxon_id": "6239", "uniprot_accession": "Q09439", "uniprot_release": "2026_03" } ], "pfam_id": "PF20840", "short_name": "DUF5382_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20862", "short_name": "DUF6843", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20891", "short_name": "DUF6844", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20893", "short_name": "DUF6845", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6834-c-pf20755.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6834-c-pf20755.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6846-pf20897.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20897", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6846-pf20897.yaml" } ], "pfam_ids": [ "PF20755", "PF20897" ], "protein_name": "Uncharacterized protein AF_2093", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDVEIVEELSKMLAGRKAVTEEEIRRKAIRCALKIMGARLVGIDAELIEDVTCSLIDCPITLKSLHFSEKVKIGDVLFYHPHVIKPEKEDFEQAYFEYKQSKKFLDAFDIMREVTDRFFEGYEAEGRYMRKYTKDGRNYYAFFSTIDDTFEDVDIHLRMVDEVDGDYVVIVPTENELNPFLKFFKQYSEDAKRAGLKIWVVNPDEKTIDPFIGYPKDFRLLKGFKNPKAAALVSAYWRVTVTDLD", "sequence_length": 245, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "80c95d8202dd8790840665d9359f9be629e124a91987e66cc60d4265f18ae05e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O28187.json", "taxon_id": "224325", "uniprot_accession": "O28187", "uniprot_release": "2026_03" } ], "pfam_id": "PF20897", "short_name": "DUF6846", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20906", "short_name": "S-Me-THD_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus pyogenes serotype M5 (strain Manfredo)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1846-c-pf20921.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20921", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1846-c-pf20921.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1846-pf08903.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08903", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1846-pf08903.yaml" } ], "pfam_ids": [ "PF08903", "PF20921" ], "protein_name": "UPF0371 protein SpyM50764", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKTIAFDSNKYLNLQRDHILERISQFDGKLYMEFGGKMLEDYHAARVLPGYEPDNKIKLLKELKEQVEIVIAINANNIEHSKARGDLGISYDQEVFRLIDKFNTLDIYVGSVVITQYNNQPAADAFRKQLEKNGIASYLHYPIKGYPTDINHIISSEGMGKNDYIKTSRNLIVVTAPGPGSGKLATCMSQMYHDQINGVKSGYAKFETFPVWNLPLHHPVNLAYEAATADLDDVNMIDPFHLETYGKTAVNYNRDIEVFPVLNRTFERILSKSPYASPTDMGVNMVGFSIVNEEAAIEASKQEIIRRYYQTLVDFKAERVTESAVKKIELLMNDIGVTPDDRHVTVAAHQKAEQTGQPALALQLPNGQIVTGKTSELFGPTAAVIINAIKTLAKIDKTTHLIEPEYVKPIQGLKVNHLGSHNPRLHSNEILIALAITAMTSEEANLAMKELGNLKGSEAHSTVILTEEDKNVLRKLGVNITFDPVYQHHKLYRK", "sequence_length": 494, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87f97b220a61cb3f148b43eaa1b50954bcc58a8c02c23d4f5034e4bd949ab6cc", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2RE19.json", "taxon_id": "160491", "uniprot_accession": "A2RE19", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus sanguinis (strain SK36)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1846-c-pf20921.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20921", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1846-c-pf20921.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1846-pf08903.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08903", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1846-pf08903.yaml" } ], "pfam_ids": [ "PF08903", "PF20921" ], "protein_name": "UPF0371 protein SSA_0208", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKIAFDSEKYLNLQRDHILERINQFEGKLYMEFGGKMLEDFHAARVLPGYEPDNKIRLLKELKDQVEIVIAINANNIEHSKARGDLGISYDQEVLRLIDTFNELDIYVGSVVITQYSGQPAADLFRSQLEKNGIASYIHYPIKGYPTDMDHIISPEGMGKNDYIKTSRNLVVVTAPGPGSGKLATCLSNMYHDQINGIKSGYAKFETFPVWNLPLHHPVNLAYEAATADLDDVNMIDPFHLQTYGKTTVNYNRDIEIFPVLKRMLERILGKSPYASPTDMGVNMVGFAIVDNDAAIEASQQEIIRRYYQTILDFKAERVSESAVKKIELLMNDLGITPLDRKVTVVARDKAESTGEPALALELPNGEIVTGKTSELFGPTAAVLINAIKKLAHIAKETKLIEPEYVKPIQGLKINHLGSRNPRLHSNEILMALAITAMENQDAANAMQQLGNLKGSEAHSTVTLTDEDKNVLRKLGIHVTMDPVYQYDRLYRK", "sequence_length": 494, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "025111153ebef5044c538c4d9ff44ee566461ba0f04568703f5eb8c799b3449d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A3CKG4.json", "taxon_id": "388919", "uniprot_accession": "A3CKG4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Clostridium botulinum (strain Loch Maree / Type A3)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1846-c-pf20921.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20921", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1846-c-pf20921.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1846-pf08903.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08903", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1846-pf08903.yaml" } ], "pfam_ids": [ "PF08903", "PF20921" ], "protein_name": "UPF0371 protein CLK_3516", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRIGFDHEKYLEEQSKYILERVNNYDKLYLEFGGKLLFDLHAKRVLPGFDENAKIKLLHKLKEKVEIIICLYAGDIERNKIRGDFGITYDVDVLRLIDDLRGYDLEVNSVVITRYSGQPATNIFINKLERRGIKVYKHEATKGYPTDVDTIVSDEGYGKNPYIETTKPIVVVTAPGPGSGKLATCLSQLYHEYKRGNVAGYSKFETFPVWNVPLKHPLNIAYESATVDLKDVNMIDSFHFDAYNKVAVNYNRDIESFPVLKRIIEKITGEESVYKSPTDMGVNRVGFGIVDDEVVKEASKQEIIRRAFKTACEYKKGYVDKETFHRAKLIMEEMNLKEEDRKVVIPAREYAAKLKERANKSETCTVVALELEDGTILTGRSSELMDGTAAVILNAVKHYANISDEIHLISPVILEPIINLKAKTLGSKRTALSCEEVLIALSICAATNPTAQVAMGKLPMLKGCQAHSTTILSTNEEQTFRKLGIDVTCDPEYISESLYYNN", "sequence_length": 502, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "75cf592303ff073b9e240c5173974ab83bc5450a2bbc981d0a06b62ddd031d0d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B1KUD0.json", "taxon_id": "498214", "uniprot_accession": "B1KUD0", "uniprot_release": "2026_03" } ], "pfam_id": "PF20921", "short_name": "DUF1846_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20935", "short_name": "DUF6847", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20938", "short_name": "DUF2264_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20941", "short_name": "DUF6848", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20942", "short_name": "DUF4785_2nd", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20943", "short_name": "DUF4785_3rd", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lactobacillus helveticus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4931-c-pf20956.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20956", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4931-c-pf20956.yaml" } ], "pfam_ids": [ "PF00854", "PF20956" ], "protein_name": "Di-/tripeptide transporter", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRAILLFYMYYAVTKGGLGMSQTTAASIMSIYGSLVYLSTLVGGWLSDRVWGSRKTVFYGGVLIMLGHIVLALPAGVTVLYRSIALIVVGTGLLKPNVSDMVGGLYSVEDPRRDAGFSIFVFGINLGSIIAPWLVPWAAQGFGVHIFGSQLNFHAGFSLAAVGMFFGLVQYVLGGKKYLSTESLTPNDPIDKGDLLNVIKWVVIIIIAIVAILAAMAGVGQLSVDNVITLLTILAIALPIYYFVMMFRSSKVTKIELGIHLLPVSLKNRLFFKKGYKRLKQIIQLELAIKRQSFIILIALIIMASILIPNKVIIAKHLLKLVLLVFYWIGLNLIPFSTFVLSFLFLDYIKHMFKKEGEQAKKTKEKSRIHHGIEIPLFLRQLIINIFTLIILEGETLFDENGVEVNIAEHPVQGYTELNINLLNKDSIDLWADWIQSVAKYLLNIMYTADVIVIIIFYLVKMAALWWAWSYIPLSTVFVGYKYSGKDESLQAALEVL", "sequence_length": 497, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "38718584d06006d37cfe391991b39a0085eccf9bd81d89848fabe49f2bdbf95a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O07380.json", "taxon_id": "1587", "uniprot_accession": "O07380", "uniprot_release": "2026_03" } ], "pfam_id": "PF20956", "short_name": "DUF4931_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20986", "short_name": "DUF6849", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2207-ipr018702.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2207-ipr018702.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/predicted-membrane-protein-yciq-like-c-terminal-domain-ipr048389.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048389", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/predicted-membrane-protein-yciq-like-c-terminal-domain-ipr048389.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2207-pf09972.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09972", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2207-pf09972.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2207-c-pf20990.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20990", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2207-c-pf20990.yaml" } ], "pfam_ids": [ "PF09972", "PF20990" ], "protein_name": "Uncharacterized protein YciQ", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGKFRCILLLIAGLFVSSLSYAENTEIPSYEEGISLFDVEATLQPDGVLDIKENIHFQARNQQIKHGFYRDLPRLWMQPDGDAALLNYHIVGVTRDGIPEPWHLDWHIGLMSIVVGDKQRFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPFEIYKTRFSLQFSNIAGNPFSEIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVLYRWPHALLSNASAPQTTNIFSHLLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVDVIETDVIPPDYTPGMLRLDAKLVYDDKGFCADIVNLIVKGKIHLEDQSDKNQQILIRVNEGATRNNAVLLPAEQLLLEALFRKGDKVVLTGRRNRVLRRAFLRMQKFYLPRKKSSFYRSDTFLQWGGLAILAVILYGNLSPVGWAGMSLVGDMFIMICWIIPFLFCSLELLFARDDDKPCVNRVIITLFLPLICSGVAFYSLYINVGDVFFYWYMPAGYFTAVCLTGYLTGMGYIFLPKFTQTGQQRYAHGEAIVNYLARKEAATHSGRRRKGETRKLDYALLGWAISANLGREWALRIAPSLSSAIRAPEIARNGVLFSLQTHLSCGANTSLLGRSYSGGGAGGGAGGGGGGGW", "sequence_length": 631, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "968c00f082e5c98edce68e47aac5d2aa5dfbd6f5acfa2d0bf0060f117e14aee9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P45848.json", "taxon_id": "83333", "uniprot_accession": "P45848", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2207-ipr018702.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR018702", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf2207-ipr018702.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/predicted-membrane-protein-yciq-like-c-terminal-domain-ipr048389.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048389", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/predicted-membrane-protein-yciq-like-c-terminal-domain-ipr048389.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf2207-pf09972.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09972", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf2207-pf09972.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf2207-c-pf20990.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20990", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf2207-c-pf20990.yaml" } ], "pfam_ids": [ "PF09972", "PF20990" ], "protein_name": "Uncharacterized protein MJ1577", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MREEKEIIIVCLLIFIVGVVGIFLTTSFNGMKYTSIYIKDYEANLYIGKNLTLEEIYSYEVLEGRKYRMLYRDWKAPLVYNGSLNTPYVKVLNLSTSSKDMVGYVVDYKGDIFVFSDEDWIKRNIEEIVDKYYIRNEVGFYNPLYIRNPGIYTTSYKFVIYPPIETDNVFYHINLKLADEHLPYKNVKINVIDENNSILDLFVYPSTFKVYKTYFGYTIEGSSPKNDPIEVEMLLKPNSVNGFTRYVYNVEGKTISAYKKYTFVSNIVMTLKYLLMAIILLFPLIAYIIYLKFGKEKFYVVPEYLSYVPNKNRKPWIVNLIFAGDAGFFDKEGFYATLLDLHNRGYIKIMNGGKIEILKTDLENLDVYESDVMKFLMKYSKNNVFDPEYIKSLAQKYKSSKDKLKKLKDELDKIMEYPRYSSKVVNAFLETRGKKIIIALLVISILLAVFLYFIPKYSQTFNEVFYLSIVFVVQNIILALTPTSLFGRWKANYYKEKLEWDAFKNFLSNLAMIKKYSPEDISIWKDWLIYGTALGVGDKVVEAMKSLNLSELVADYVIIHSNYDSMKTSVDSVYSSTTGSGGGFGAGGGFGGGGGGAR", "sequence_length": 598, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ced5d97acaa0676aa94563a12f23d2fc690dc425f453286b939b44f6ca20aa85", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58972.json", "taxon_id": "243232", "uniprot_accession": "Q58972", "uniprot_release": "2026_03" } ], "pfam_id": "PF20990", "short_name": "DUF2207_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF20995", "short_name": "Tla3_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bos taurus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5581-pf17744.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17744", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5581-pf17744.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5581-n-pf20996.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20996", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5581-n-pf20996.yaml" } ], "pfam_ids": [ "PF17744", "PF20996" ], "protein_name": "Fibronectin type III domain-containing protein 11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNFQVTGLGLDKIKLDSPQSFLDQEEVEEAEDGQLLEPEAWRTYVERRNALQEFLTSDLSPHLLKRHHARMELLKKCSYYIEILPKHLALGDQNPLVLPTTMFQLIDPWKFQRMKKVGAAQTKIQLLLLGDLLEQLDHGRSELDALLESPDPRPFLAGWGLVEQRLADLSAVMDSFLAMMVPGRLHIKHRLVSDIGATKIPHIRLMLSTKMPVMFDRKESVAHQDWVSLRWFVTIQQAVPEQFELRYKLLDPRTQQECMQCGIIPVAACAFDIRNLLPNRAYKFTVKRAESYTLVYEPWRDSLTLHTRPGPPEGLAPSRLGKLGLSLTTPSER", "sequence_length": 333, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f66ad61813fc201196846f9d4ac11ae4d52a62a224259e4a815cb0ebe0769114", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q2T9Z2.json", "taxon_id": "9913", "uniprot_accession": "Q2T9Z2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5581-fn3-like-domain-ipr048317.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048317", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5581-fn3-like-domain-ipr048317.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5581-n-terminal-domain-ipr049231.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5581-n-terminal-domain-ipr049231.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5581-pf17744.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17744", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5581-pf17744.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5581-n-pf20996.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20996", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5581-n-pf20996.yaml" } ], "pfam_ids": [ "PF17744", "PF20996" ], "protein_name": "Fibronectin type III domain-containing protein 11", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNFQVTGLALDKMKLDSPHSFLDAEEVEEAEDQQLLEPEAWRTYMERRNVLREFLTTDLSPQLLKRHHARMQLLKKCSYYIEILPKHLALGDQNPLVLPNTMFQLIDPWKFQRMKKVGTAQTKIQLLLLGDLLEQLDHGRAALDALLEAPDPRPFLAGWGLVEQQLADLSVVMDNFLAMMVPGHLHVKHRLVSDIGATKIPHIRLMLSTKMPVMFDRKESVAHQDWVSLRWFVTIQPAAPEQYELRFKLLEPRTQQECTQCGIVPVAACTFDVHNLLPNRTYKFTIKRAESYTLVYEPWRDSLTLQTTPGPPEGPAPRLGEPPAGL", "sequence_length": 326, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ad1f08124914fa5f6e6ee00bf0f129be5f5e23e00c9405ea6c81ccc523139aa9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q80WB0.json", "taxon_id": "10090", "uniprot_accession": "Q80WB0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5581-fn3-like-domain-ipr048317.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048317", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5581-fn3-like-domain-ipr048317.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/duf5581-n-terminal-domain-ipr049231.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049231", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/duf5581-n-terminal-domain-ipr049231.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf5581-pf17744.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF17744", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf5581-pf17744.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf5581-n-pf20996.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF20996", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf5581-n-pf20996.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9BVV2", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF17744", "PF20996" ], "protein_name": "Fibronectin type III domain-containing protein 11", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", 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"MAALAPGILQKLIQGMKTGIKPTREHRSSMLQVTDIVPIDLDEKSLEPKQGFLIKISDSSHSIYVSLPSDQDDVVLSNKLQLGQFIYVDRLEPGSPVPVIKGAKPIPGRHPLLGTPETLVVPKERTDQEIGSKPRRGSWGQNVDFSSSPFVVKPMALEFDHSTPAKRSVSARFAASPIRRGGVRCSFGGGVLGKLEGESPATAMLRKSCFVSSASKFPRSRSVCDRQAKKNNASLFSPFKSSLEAQEDVVPLSTSKKIKPEKDTNLSGRLNILSKEATQLREVAQKVALQALREATITEIVVRHTKTFTNLSKSAKADCPAVCFEKFMEFHQQMAQTIGELTSIEVAATPDAENKSQNINARTENQKPTEEGSSSILHEIAYNSIDQEKRRSKRRIVLKQQSEGKTVRSNDENKNPASGGISNTIRLAKEIEDEAANWFMEFIEIALEKGMKKSRGPDDADVKKVPQSLILGVLNWIEVEQSDSNNNKRRRVHPKASKITRKLRIKLKNP", "sequence_length": 510, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "23a0408da6af0385d7bf69fbf6aad370d2901a8b38968a649d559bb558ba7f7e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O64602.json", "taxon_id": "3702", "uniprot_accession": "O64602", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml" } ], "pfam_ids": [ "PF06075", "PF21647" ], "protein_name": "Protein CORTICAL MICROTUBULE DISORDERING 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLTPRVLIKLLETMNTNIKVRGEYRSVLLQVISIVPALAGSELWPNQGFFIKVSDSSHSTYVSLSNEDNELILNNKLGIGQFFYVDKLDAGTPVPVLVGVRPISGRHPFVGNPKDLMQMLVPSETTPREEEYHNQKKKDGARSNIVENIRKHQPFVIKEEKTGVASRYMKGISNSKASGSDSSSGGSNNEGETGSIMVAKKVGVLAKGKQREHKDQARQAGPLQCRPATAPTKAEPKKLSLSSTVNYINRKSNSAEDASWSSLPVSLSKLGKGMLRRRNLAALIAAEVQREALAASHLIKCISMFAELSSNASPKNPHTSLRNFFTLQSILDQVQVTVVASKDKSFQPVNIHSLWMEPEKLSKKASLSSSRATMKPSKALTEAEKLEWVKGNGTEEIKELTNTLKRETRSWFLKFLEDALDTGLHATVPEKKGKTKGARLAEPDNHIAETLSQLKQANEWLEKVKNDNLSSDNSLLENIERLKKKIYSCLLLYVDSAASAIGV", "sequence_length": 505, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2ba20c356f10041635205a73998c641a886c330a296363a32114fe2c0729ef9d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6NKR8.json", "taxon_id": "3702", "uniprot_accession": "Q6NKR8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ 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"cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cord-n-pf06075.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06075", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cord-n-pf06075.yaml" } ], "pfam_ids": [ "PF06075", "PF21647" ], "protein_name": "Protein CORTICAL MICROTUBULE DISORDERING 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MANLVPGVLLKLLQHMNTDVKIAGEHRSSLLQVISIVPALAGGELFPNQGFYLKVSDSSHATYVSLPDEHDDLILSDKIQLGQYIHVDRVESSSPVPILRGVRPVPGRHPCVGDPEDIVATHSLGFLSDDKVKNDNNGGVSSKPKERVKASVKANGSGSDGERIIGNRLSVSISRDDSSDGKKPVSALFRAKSAKSSLSLDVKKESLGKLKTSSGSKSIPSSPTSCYSLPNSFAKFANGIKQQQTVKPKLLEKGSPRMGLSEKGRSLLKAESPKVGKKLPMIKNFVQGIEFGAKALRKSWEGNLDIRGSDRTKSSLPRRDLTPDSRSLAAPRRSTSSEKLPSKQERANVFARSSKEHNKIQSTKKVEPTAVLDTKDKTSRPKSTSVEKKSVAENGLPGNLVKVSVNGKRLAAANIQWSSLPPSLSRMGQEVLRHREAAQVVAIEALQEASASESLLQCLIMYSDLLSTAKEDDPLPVVEQFLKLHSGLKNVQVITESLSKLLSLMSSPDNEENRSEEAIKAASEKQKLAASWVQAALVTNLSPFSVYSSKQAKLAASRSKPVIILESPGNNSSSKTRGNIQNKPTIGSKLVAQGMIRKHRENSSSQKATSVAGSESPPLNWVKGNGLNEATDLAEKLQMVSQDWFLGFVERFLDADVITSSSLSLSDNGQIAGMLSQLKSVNDWLDEIGSKEDEEGLQEVSKETIDRLRKKIYEYLLTHVESAAAALGGGGGSVSSPRPKPIETKAKR", "sequence_length": 748, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79672aa45f24dc9b0055bb0e7f255180240bfd1d4a8071758f8b8bc7ab0ea213", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9FRR2.json", "taxon_id": "3702", "uniprot_accession": "Q9FRR2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml" } ], "pfam_ids": [ "PF06075", "PF21647" ], "protein_name": "Protein CORTICAL MICROTUBULE DISORDERING 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLTPGVLSNLLNIAAGNSPSSPPLLSSHRSPLLQVIEIVPCLSDDQWRSEAFFVKVSDSLHAAYVAVSTGDDADLIRSDEIQLGQFIYICGGLHVEKGCPVPVIRGLKPVPKRRMCVGNPSDLYSSDLLLPFTQVSVSPTTTKKKNLVETRRLSLDSARRSCWDQTPPVTRRRDAALLLSSPRLKSKLVLNDKSLLKIESPSKYFNCGTSPALRNKNVVKPGSPISMASSPKDGIKSPISKHLNCETPALRSRYVVKPASPISVTRSPKDGIKSLSKAVTPPVALFKVPSSHMTWSDQRMSWSGLPKTIQLLGKEVSSHRQVAVSAAVSALEEASAMESVLFSLQAFAELCDSTKKLSTGQVVARFLDIYHNTQNTCKAVHRLLTQNRNNGSCRLVVNKNATSWVQAAVVTGFSQFNLFKEPGKKGDAADHHYIVMQNSSEKLNPKETTSSRTPSYKGAKPPATKHCSVSDRSSLEGKSSLKDSTSLADELVQVSSQWFLKYLENSLNKGSFLVKTEETNGKESLLVHLKALNHWLDDLNLNRTETNEKVEDLRKKLQRFLLEHIESVIGDTYNMKRKIINSI", "sequence_length": 585, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "853ddf2a2bbdf20cb97d8921c1e377b073855a6736c9671f82045c19dcbcca96", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SKA8.json", "taxon_id": "3702", "uniprot_accession": "Q9SKA8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049172", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-c-terminal-domain-ipr049172.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR048297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml" } ], "pfam_ids": [ "PF06075", "PF21647" ], "protein_name": "Protein CORTICAL MICROTUBULE DISORDERING 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLAPGILLKLLQCMNSGTRPTGDHRSAILQVTGIVPALAGSDLWPNQGFYVQISDSLNSTYVSLSERDTDLILSNRLQLGQFIYLERLEFATPVPRAAGIRPVAGRHAFVGKPEPLIARVSNGSKRDFVIQPVSDSEYSLDPIAVYLNNRRIDDDGDSDVKPNVRQALAPVNQNEENRNQIRNQKPKTTPQRFSSPASSKRSVSSGKKNCSGAVAVTVERDPSPVVSGKGRRSASPVPSKCVVPSLAAAREENRKVAREPSIVVPSRYRQPSPNGRKMNPSPSGRRMSISPGRRLSSGLKMTPMVGDSSGKKKMAVIAAGISKVSEALVGSSAKNGNRKNWEEPLAGDGSAKNKPDHQAILRTQAAMTRRLSDANRRKSGSSSSVCEEKAKSCSSESSLLEEVSAFEGLGITYHERKWTDGSVPLDSISDELAKLGKEAMKRRDFAAKAAARALEEANANECIIRCLSKFSELSSASKVGNPLRIINEFLKIYEDVMKYSKIASENSFSLSSDQQNPISLWVEAALATNLEVVSLVKSHESPSSLKKSMPTRLSPRPSSKTDNIVGMWTDLDGLKETAKFAVNLQSEMQVWFIEFVEESLDNKNAAKRSLDGSSIAAVLSQLKQVNEWLDRVSSNQENKITTMDKIERLKRKIYGFVIHHVGSTYDNSASS", "sequence_length": 673, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b32794472d88c50a08461cf2e3c73f3bff3dec94a456ac4c83cd6b67b3e576ad", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9T0K8.json", "taxon_id": "3702", "uniprot_accession": "Q9T0K8", "uniprot_release": "2026_03" }, { 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"section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cord-n-terminal-domain-ipr048297.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cord-c-pf21647.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF21647", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cord-c-pf21647.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cord-n-pf06075.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF06075", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cord-n-pf06075.yaml" } ], "pfam_ids": [ "PF06075", "PF21647" ], "protein_name": "Protein CORTICAL MICROTUBULE DISORDERING 4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAALAPGILQKLIDGMKTGVKPTGEHRSSLLQVTDIVPIDLDEKNLLPKQGFFIKVSDSSHSIYVSLPSDQDDDVLSNKMQLGQFIYVDRLDPGTPVPIIKGARPIPGRHPLLGTPEPLMSTRGKIESSRPRRGSWGQNGDVSSPFVLKPAPLDFDQCTPAKHRLGTGRFMAASPNVMTRGRSPGGVRCSYGGGLLSKMAESPAAMMRKSCVVPPSSKFPRSKSVCDRETMAKNSVLFSPFKSSAKKNDSPPPSVRTRRATAASLLEDEREAPKSTSKYSKLEKPEKSLSLPGRLSTLSKEAMQQRETAQKIALQALREATTTETVVRHLKTFANLSKSAKADCPAACFDKFLEFHSQISETMNEIASIEAAASPATTEKKSEDGSLILHEIQHNSIDQEKTTSKRRILLKQQQKRSNDENKNPAVSLSGLGNTARLVKEIEKEAANWFMEFIEKALEKGMKKCKGTSDADVKKVPQSLILKVVNWVEEEHSADNTKRPVHPKASHITRKLRIKLKNP", "sequence_length": 518, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "54e35c513a7d056b5217448a82e00303d95b74310c6da4fd506656e7e131a684", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9ZUB7.json", "taxon_id": "3702", "uniprot_accession": "Q9ZUB7", "uniprot_release": "2026_03" } ], "pfam_id": "PF21647", "short_name": "CORD_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF21651", "short_name": "DUF6858", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6859-pf21656.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF21656", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6859-pf21656.yaml" } ], "pfam_ids": [ "PF12955", "PF21656" ], "protein_name": "Vacuolar sorting protein vps3844", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSLLRYFIFFIGGCTLALASGVSYTEASVYMSGLSGNENEVPSISPSDSRLVFAHKLGVSRFHKLKSHSGARKIINEMLHSHSELSSFFYAEKSNTFLTIAGLAESELFDTLNPAFRISSCPSSNAFASLMCRYERQLDSLDNGKTTDIYLNDIGGVISIHDSTGVYSQITTTPYKSLEDYEQLFGEDKASMFDISVKQDRVFLSEIYALKILVEFLSSKSQQERSDTSIVIGQLVGLEALYEKYGKDSKIYQVARENMMTLLSMIKQVSSTYTFILLPPIDSSETSTRYHKRQVDMEAFGEEIEEVVASYEKNYNGRCYISEEACSKATNDCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTIRWAGESCSKQDISVEFQFFFWFTIIGFGLLIFSIMLLFSIGQEELANVLTSTATVIKKTT", "sequence_length": 428, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9f37c632ff680d178fdff0ab8703e406f1d540f334ac6858e66d88d73a6ba1b4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O74728.json", "taxon_id": "284812", "uniprot_accession": "O74728", "uniprot_release": "2026_03" } ], "pfam_id": "PF21656", "short_name": "DUF6859", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4049-ipr025123.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR025123", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf4049-ipr025123.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf6860-ipr049206.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049206", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf6860-ipr049206.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf4049-pf13258.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf4049-pf13258.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6860-pf21661.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF21661", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6860-pf21661.yaml" } ], "pfam_ids": [ "PF13258", "PF21661" ], "protein_name": "Putative uncharacterized protein YhiL", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKAIDNQIRNISSSHQDKHSDKVNSHQHHGKVDKTHRAKIVEFDKLDNDSQIDNDFGLHIIYFLQHGHWKVNDRSHQMEKVWFYNSEPSIDIQEYNRFADNTTDTFIFTIIPDNNHVLKLSSPITVTVECKGGYYFINSSGDKSDIIYKVDGLSIIARNFFTLLSGNFKPDWRWDVSKETFTKEKFDSYVKSVFSKIDFYKQCGVINPQNANTAYFGDTDGRVGAVLYALLVSGHIGIREKGWSLLCELLKHEEMASSAYKHKNNKVLYDLLNTRDMILNELHQHVFLKDDAITPCIFLGDHTGDRFSTIFGDKYILTLLNSMRNMEGNKDSRINKNVVVLAGNHEINFNGNYTARLANHKLSAGDTYNLIKTLDVCNYDSERQVLTSHHGIIRDEEKKCYCLGALQVPFNQMKNPTDPEELANIFNKKHKEHMDDPLFHLIRSNTLKPTPVYANYFDNTTDFRPARERIFICGETLKGEDPSKYIRQKYGHHGPGVDHNQQFDNGIMGLNSLKEARDKNNKIIYSSGLSCFQLH", "sequence_length": 535, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cbaa8b5d3f69b017b515ef76ab3657f5ed050ff3c024e744b506a3a4011c7d90", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P37629.json", "taxon_id": "83333", "uniprot_accession": "P37629", "uniprot_release": "2026_03" } ], "pfam_id": "PF21661", "short_name": "DUF6860", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF21666", "short_name": "DUF4246_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pseudomonas putida (strain GB-1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6861-pf21724.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF21724", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6861-pf21724.yaml" } ], "pfam_ids": [ "PF01129", "PF21724" ], "protein_name": "NAD(+)--protein-arginine ADP-ribosyltransferase Tre1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDLLANVPSWSDIERSLDQKFSAVNQSIHQGLQSANDSWHGFSRRVSDGAGQAYGYLGGHRIDNVQQALAMSYPIFQEDLKRKWASIGIEQILPVLLQLVKEVSMILGGSIAVGSAAGGAIGALAFGVGAAPGAVAGAGIGLEVGNLILLALGLSAIAEYFIKGLPVCLATLQEGIATAWNAEEGVKPAGLDPTGGSVAVIQERTERAARQLARGQEQLVLLLLMAIVTYLLRGQMKAGIMGSMENIATRSAKLQADIANKQFGAWLAKNEAKLLAHPDLQIKGPTPVKKPEPLQPARQPEKASAPKPVAKPAVMSLREAVGNQTADRWISTGRRIADFTDPKRSALLTDDQIGALHGYTTNEGYQWINPALRGQTPLSPQMEAFVTHANEGLAKLPSYTLGDTFRGTTLPEDVMSRMQVGLPTSDAAFLSTSADRALAFNGNVKMTLQGVTGKDISFLSGHREAEVLFGPGTRFNVVDRVDNGSVTQFILKEIP", "sequence_length": 495, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7fd49f24abd1bfcec30070505e804ea1ddcd93f0949dc1623d4044f851723a0b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B0KTG9.json", "taxon_id": "76869", "uniprot_accession": "B0KTG9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6861-pf21724.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF21724", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6861-pf21724.yaml" } ], "pfam_ids": [ "PF21724" ], "protein_name": "Uncharacterized protein slr0273", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKNMSPICPVCGQENDAANRYCSFCGTRFNSSLPSMDLFQAQTVQAPAPEQMVFSGNGQDLPSLTNHPFWGAIPVLGLLTVLPLGLFIFGMAIDANDWPYAALLVFLLFLFTLLIFLGQLWGNVSQAREFILSERPLILWRYSPDEWQQLRQAQFSESAEDMQEMAGCAVPFFAGVGTLLGTVLGSVEGFVGAVPGAAIGAMAGYIFGKILVPIATGLNQSTNRELYRTDLPVWVVLAPGEIYYNRQYFRADTIGDRLEGITLDEGALTWLRIETFAPRGSITASFDGNILVPHRMLATVKAVLPQLQQFISGED", "sequence_length": 316, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a492eaffc8c0986b990cad77b5786d80f64ff81da5b5b6732f03d233d462031b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P73894.json", "taxon_id": "1111708", "uniprot_accession": "P73894", "uniprot_release": "2026_03" } ], "pfam_id": "PF21724", "short_name": "DUF6861", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain STEC_O31)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf6862-pf21726.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF21726", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf6862-pf21726.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/fil-haemagg-2-pf13332.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13332", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/fil-haemagg-2-pf13332.yaml" } ], "pfam_ids": [ "PF04829", "PF05860", "PF13332", "PF21726" ], "protein_name": "tRNA nuclease CdiA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHQPPVRFPYRLLSYLISTIIAGQPLLPAVGAVITPQNGAGMDKAANGVPVVNIATPNGAGISHNRFTDYNVGKEGLILNNATGKLNPTQLGGLIQNNPNLKAGGEAKGIINEVTGGNRSLLQGYTEVAGKAANVMVANPYGITCDGCGFINTPRATLTTGRPVMNADGSLQALEVTEGSITINGAGLDGTRSDAVSIIARATEVNAALHAKDLTVTAGANRVTADGRVSALKGEGDVPKVAVDTGALGGMYARRIHLTSTESGVGVNLGNLYAREGDIILSSSGKLVLKNSLAGGNTTVTGTDVSLSGDNKAGGNLSVTGTTGLTLNQSRLVTDKNLVLSSSGQIVQNGGELTAGQNAMLSAQHLNQTSGAVNAAENVTLTTTGGITLKGRSVAGKTLTVSSGSLNNGGTLGAGRDATVKTGTFSNTGAVQGNGLKVTATDLTSTGSIKSGSTLDISARNATLSGDAGAKDSARVTVSGTLENRGRLVSDDVLTLSATQINNSGTLSGAKELVASADTLTTTEKSVTNSDGNLMLNSASSTLAGETSAGGTVSVKGNSLKTTTTAQTQGNSVSVDVQNAQLDGTQAARDILTLNASEKLTHSGKSSAPSLSLSAPELTSSGVLVASALNTQSQTLTNSGLLQGEASLTVNTQRLDNQQNGTLYSAADLTLDIPDIRNSGLITGDNGLTLNTASLSNPGKITADTLNVRATTLDGDGLLQGAAALALAGDTLSQGSHGRWLTAGDLSLRGKTLNTAGTTQGQNLTVQADRWANSGSVLATGNLTASATGQLTSTGDIMSQGDTTLNAATTDNRGSLLSAGTLSLDGNSLDNSGTVQGNHVTLHHRSTDNSGTVTGLSGLTLHSADGLTNSGALLSQNSLVLSAGDVTNSGRIQGQNITLDASSLTSSGAVQSALDLALTLSGDVIAATGSKITALGDARLTGKVLGNQGLISAKTLEVNGDSLSNSGEISGVNSLNVTLSGNLQQHGKMLTGGALNVNARDISNSGQLQGADNRITASSLANSGRVQGESGLTLTLLNALTNQTSGVLLSQNVSALSAPVLTNDGTIQGNGKTTLSAATQAHNSGKILSGGELTFTTPDYSGSGWLQATDLLLNVAKLAGNGTVMAANQATLTGNSLTNRGLFQAAQLNVNTQTITNSGTLLGNQGLTIKGNNLNNAGGKVFSGGDMLAEMVSLSGAGQLVALGNLTLKLTRGLTAQGVIAANKQLSVSSQGDITNGATLQGNGITLNAAGRLTNNGQLTAGNGTTALSGSGIAMNASGSLQAGGDVSLTSRGDITLDAFTGTTGSLMLTAAGAVINTALLYAGNNLSLFASTIRNHHGDMLAGDSLVMQKDVSGAANAEVINTSGNIETTRGDITIRTGHLLNQREGINETKSYIPVENVAVPDGANSVSVRVGDLGEDGWGYYVKSWSGTAGGGFDAWAVPTEKGATRKFLTGTTRVDVGATGGDARISAGNNLLIDADKLDNTGSHLLASGFVSLSGSQLNNQSFFGYTQDEYNVYRYYGKLAMIPNDGHLQYGDASADDRVTFTLSGAPEYVTRDTGQALRAVIQAGKNVTAVFSSDISNTSTTSNAGRITNTLAAPEINTPAEKNISPRMAQLAPDGTEMLTVTAPDWTDTITRLTIGSGTDLASGIVEGNYPLPSGNNGYFVPSADPDSPYLITVNPKLDGLGKVDSSLFAGLYDLLRMHPGQAPRETDPAYTDEKQFPGSSYFLDRLGLKPEKDYRFLGDAAFDTRYVSNYMLNQIGGRYINGVGSDTDQMRYLMDNAARAQKALGLKFGVALTADQVAALDQSILWYKAVTIKGQTVMVPEVYLSPKDVTLQNGSIISGQNVHLAGGNVTNSGSTLMAQNNLTIDSADSLGNLESGLINAGGALGLKAMGDINNISATITGKTVRLESLAGNVNNLTRYSHWQLDAPEDSLALKHTYTGSIASVSAMDSLDIRADKNISVTGAEISAGDRAALIAGNDLSLNAIDRVSSRRHANSESHQRSAGLTTITAGDSVMLSAGRDVSSQGAGIAAEDNITVRAGRDVNLLAEESVTGSSSYSKKKTVIDETVRQQGAEIASGGDTTITAGRDITAVASSVTATGNISVNAGRDVALTTATESDYHYLETKKKSGGFLSKKTTHTISENSATREAGALLSGNRVTVNAGDNLTVQGSDVVADRDVSLAAGNHVDVLAATSTDTSWRFKETKKSGLMGTGGIGFTIGSSKTTHDRREAGTTQSQSASTIGSTAGNVSITAGKQAHISGSDVIANRDISITGDSVVVDPGHDRRTVDEKFEQKKSGLTVALSGTVGSAINNAVTSAQETKESSDSRLKALQATKTALSGVQAGQAAAMATATGDPNATGVSLSLTTQKSKSQQHSESDTVSGSTLNAGNNLSVVATGKNRGDNRGDIVIAGSQLKAGGNTSLDAANDILLSGAANTQKTTGRNSSSGGGVGVSIGAGKGAGISVFASVNAAKGSEKGNGTEWTETTTDSGKTVTINSGRDTVLNGAQVNGNRIIADVGHDLLISSQQDTSKYDSKQTSVAAGGSFTFGSMTGSGYIAASRDKMKSRFDSVAEQTGMFAGDGGFDITVGRHTQLDGAVIASTATPDKNHLDTGTLGFSDLHNEADYKVSHSGISLSGGGSFGDKFQGNMPGGMISAGGHSGHAEGTTQAAVAEGTITIRDRDNQKQNPADLSRDPAHANDSISPIFDKEKEQRRLQTVGLISDIGSQVADIARTQGELNALKAAKEATGETLPANATEKQRQEYLAKLRDTPEYKKEQEKYGTGSEIQLGIQAATAALQGLAGGNLAGALAGASAPELAHLLKSTEKDPAVNAIAHAILGGAVAAMQGNNVAAGAAGAATGELAARAIAGMLYPGVKQSDLSEEQKQTISTLATVSAGLAGGLTGNSSASAAVGAQSGKNAVDNNYLSVSEKTELEIAKQTLKNSKNPAEREKAQQKYDALLEKDIASDKEVIAACGNGNAGSSACASARLKVIASKEGYEDGPYNSKYSQQYADAYGQIVNLLDITSVDVQNQQQVKDAMVSYFMATLGVDQKTAQGYVETTQGLEIAAASMTPLFGQAVANKITALVDKANKYPSGIGFKINQPEHLAQLDGYSQKKGISGAHNADVFNKAVVDNGVKIISETPTGVRGITQVQYEIPTKDAAGNTTGNYKGNGAKPFEKTIYDPKIFTDEKMLQLGQEAAAIGYSNAIKNGLQAYDAKAGGVTFRVYIDQKTGIVSNFHPK", "sequence_length": 3253, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "578045e7e21d67bea804c9f299f6a32384b882a6abf23fc4b4f5915cb6d53c90", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/A0A1S4NYE3.json", "taxon_id": "754081", "uniprot_accession": "A0A1S4NYE3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain NC101)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf6862-pf21726.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF21726", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf6862-pf21726.yaml" } ], "pfam_ids": [ "PF04829", "PF05860", "PF13332", "PF21726" ], "protein_name": "tRNA nuclease CdiA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHQPPVRFTYRLLSYLISTIIAGQPLLPAVGAVITPQNGAGMDKAANGVPVVNIATPDGAGISHNRFTDYNVGKEGLILNNATGKLNPTQLGGLIQNNPNLKAGGEAKGIINEVTGGNRSLLQGYTEVAGKAANVMVANPYGITCDGCGFINTPHATLTTGRPVMNADGSLQALEVTEGSITINGAGLDGTRSDAVSIIARATEVNAALHAKDLTVTAGANRITADGRVSALKGEGDVPKVAVDTGALGGMYARRIHLTSTESGVGVNLGNLYARDGDITLDASGRLTVNNSLATGAVTAKGQGVTLTGDHKAGGNLSVSSRSDIVLSNGTLNSDKDLSLTAGGRITQQNEKLTAGRDVTLAAKNITQDTASQINAARDIVTVSSDTLTTQGQITAGQNLTASATTLTQDGTLLAKGHAGLDAGTLNNSGAVQGASLTLGSTTLSNSGSLLSGGPLTVNTRDFTQSGRTGAKGKVDITASGKLTSTGSLVSDDVLVLKAQDVTQNGVLSGGKGLTVSAQALSSGKKSVTHSDAAMTLNVTTVALDGENSAGDTLRVQADKLSTAAGAQLQSGKNLSINARDARLAGTQAAQQTMAVNASEKLTHSGKSSAPSLSLSAPELTSSGVLVGSALNTQSQTLTNSGLLQGEASLTVNTQRLDNQQNGTLYSAADLTLDIPDIRNSGLITGDNGLTLNTASLSNPGKIIADTLNVRATTLDGDGLLQGAGALALAGDTLSQGRNGRWLTAGDLSLRGKTLHTAGTTQGQNLTVQADNWANSGSVLATGNLTASATGQLTSTGDIMSQGDTTLNAATTDNRGSLLSAGTLSLDGNSLDNRGTVQGNHVTIRQNSVTNSGTLTGIAALTLAARMDMASPQPALMNNGGSLLTSGDLTITAGSITSSGHWQGKQVLITADSLANSGAIQAADSLTARLTGELVSTAGSKVTSNGEMALSALNLSNSGQWIAKNLTLKANSLTSAGDITGVDALTLTVNQTLNNHASGKLLSAGVLTLKADSVKNDGQLQGNATTITAGQLTNGGHLQGETLTLTASGGVNNRSGGVLMSRNALNVSTATLSNQGTIQGGGGVSLNATDRLQNDGKILSGSNLTLTAQVLANTGSGLVQAATLLLDVVNTVNGGRVLATGSADVKGTTLNNTGTLQGADLLVNYHTFSNSGTLLGTSGLGVKGSSLLQNGTGRLYSAGNLLLDAQDFSGQGQVVATGDVTLKLIAALTNHGTLAAGKTLSVTSQNAITNGGVMQGDAMVLGAGEAFTNNGMLTAGKGNSVFSAQRLFLNAPGSLQAGGDVSLNSRSDITISGFTGTAGSLTMNVAGTLLNSALIYAGNNLKLFTDRLHNQHGDILAGNSLWVQKDASGGANTEIINTSGNIETHQGDIVVRTGHLLNQREGFSATTTTRTNPSSIQGMGNALVDIPLSLLPDGSYGYFTREVENQHGTPCNGHGACNITMDTLYYYAPFADSATQRFLSSQNITTVTGADNPAGRIASGRNLSAEAERLENRASFILANGDIALSGRELSNQSWQTGTENEYLVYRYDPKTFYGSYATGSLDKLPLLSPEFENNTIRFSLDGREKDYTPGKTYYSVIQAGGDVKTRFTSSINNGTTTAHAGSVSPVVSAPVLNTLSQQTGGDSLTQTALQQYEPVVVGSPQWHDELAGALKNIAGGSPLTGQTGISDDWPLPSGNNGYLVPSTDPDSPYLITVNPKLDGLGQVDSHLFAGLYELLGAKPGQAPRETAPSYTDEKQFLGSSYFLDRLGLKPEKDYRFLGDAVFDTRYVSNAVLSRTGSRYLNGLGSDTEQMRYLMDNAARQQKGLGLEFGVALTAEQIAQLDGSILWWESATINGQTVMVPKLYLSPEDITLHNGSVISGNNVQLAGGNITNSGGSINAQNGLSLDSTGYIDNLNAGLISAGGSLDLSAIGDISNISSVISGKTVQLESVSGNISNITRRQQWNAGSDSRYGGVHLSGTDTGPVATIKGTDSLSLDAGKNIDITGATVSSGGTLGMSAGNDINIAANLISGSKSQSGFWHTDDNSASSTTSQGSSISAGGNLAMAAGHNLDVTASSVSAGHSALLSAGNDLSLNAVRESKNSRNGRSESHESHAAVSTVTAGDNLLLVAGRDVASQAAGVAAENNVVIRGGRDVNLVAESAGAGDSYTSKKKKEINETVRQQGTEIASGGDTTVNAGRDITAVASSVTATGNISVNAGRDVALTTATESDYHYLETKKKSGGFLSKKTTHTISEDSASREAGSLLSGNRVTVNAGDNLTVEGSDVVADQDVSLAAGNHVDVLAATSTDTSWRFKETKKSGLMGTGGIGFTIGSSKTTHDRREAGTTQSQSASTIGSTAGNVSITAGKQAHISGSDVIANRDISITGDSVVVDPGHDRRTVDEKFEQKKSGLTVALSGTVGSAINNAVTSAQETKESSDSRLKALQATKTALSGVQAGQAAAMATATGDPNATGVSLSLTTQKSKSQQHSESDTVSGSTLNAGNNLSVVATGKNRGDNRGDIVIAGSQLKAGGNTSLDAANDVLLSGAANTQKTTGRNSSSGGGVGVSIGAGGNGAGISVFASVNAAKGSEKGNGTEWTETTIDSGKTVTINSGRDTVLNGAQVNGNRIIADVGHDLLISSQQDTSKYDSKQTSVAAGGSFTFGSMTGSGYIAASRDKMKSRFDSVAEQTGMFSGDGGFDITVGNHTQLDGAVIASTATADKNSLDTGTLGFSDIHNEADYKVSHSGISLSGGGSFGDKFQGNMPGGMISAGGHSGHAEGTTQAAVADGTITIRDRDNQKQNLANLSRDPAHANDSISPIFDKEKEQRRLQTVGLISDIGSQVADIARTQGELNALKAAQDKYGPVPADATEEQRQAYLAKLRDTPEYKKEQEKYGTGSEIQRGIQAATAALQGLAGGNLAGALAGASAPELAHLLKSTEKDPAVNAIAHAILGGTVAAMQGNNVAAGAAGAATGELAARAIAGMLYPGVKQSDLSEEQKQTISTLATVSAGLAGGLTGNSTASAAVGAQSGKNAVENNYLSVSEKTELEIAKQTLKNSKDPAEREKAQQKYDALLEKDIASDKEVIAACSNGNASSSACASARLKVIASKEGYEDGPYNSKYSQQYADAYGQIVNLLDITSVDAQNQQQVKNAMINYFMVTKGVDRQTAESYTETTQGLEIIAASVTPLIGQAASNKLSYLGIGKKISFDGDFYTVDGMKFSKSYYEKLWEQGRPAPFVQAREVLNSNPKIEPDPRGAPGYLRYEGAGLEMIYNPKTGQVGHIQPVKVK", "sequence_length": 3289, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8cd56e2cc36c4e5e8e9ff06c4c32b9eccecef4299648b8a8a50ffe2c192d104a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P0DSI1.json", "taxon_id": "753642", "uniprot_accession": "P0DSI1", "uniprot_release": "2026_03" } ], "pfam_id": "PF21726", "short_name": "DUF6862", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF21727", "short_name": "DUF6863", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF21732", "short_name": "DUF6864", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF21737", "short_name": "DUF6865", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF21739", "short_name": "DUF6866_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF21740", "short_name": "DUF6866_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF21741", "short_name": "DUF6867", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF21742", "short_name": "DUF6868", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF21746", "short_name": "DUF6869", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF21757", "short_name": "DUF6870", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydomonas reinhardtii", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cfap58-cc-pf21771.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF21771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cfap58-cc-pf21771.yaml" } ], "pfam_ids": [ "PF21771" ], "protein_name": "Cilia- and flagella-associated protein 58", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASDFSTGLHGGHHETLEQYNKVLEELAADAVMDPFRVEYEKLHRALRKTYESQARLAKKCQELNSDISLNASKVQSALKLNEEDRETAVALKREINKAWKMVDDSTVKETKAKETAQQLKVEIANLSRLVEEGAGLAIGEETALNELLKQKEELARERDAQVEQLMKYRSDLMETQEKLRAADAEKLQLDADIQHLRGTINDKKAEAEREIRKKERMEKEMKELRQQLEIRSSEIKSKQLQVTSTEEQVARLEQMLRDAKFATEKVQKEYNMLNERMQKLHHDLEEQIHTNTQLLTENSAKQVELRVKEEEISGIKQEASRVNKLREQTVKKTKQLEEQRVEVEKERDVLRAELAALERELEAKQKEVDVEKKKLEELTRERDAENATQKQIDLVKINENAKRNLEQEIQGYKMEAQKQSKLIYQLEKEREKYDLEAAEAANKYQQAQSEVKLRVDAIMDLQRRIAEGESKLKQQQNLYEAVRADRNLYSKNLIEAQDEIQEMKRKFKIMQHQIEQLKEEITGKDLYLLKEHFEHQKVINEKEQLRNELDRSKSNIKEADSAINAQKVEIDKLNHIINEADQERRRQKKEYDIVVNERDILGTQLVRRNDELAALYERIKIQQATLQMGQSQYRDRLAEIRQLKVRLADLKRQLHLLKSSVSNIDVLKREVHQLGRELLQERTKVKALSEELENPLNVHRWRKLEGSDPGTYEMIQKIQTLQKRLISKTEEVVEKDLLIQEKEKLYMELKNILARQPGPEVAEQLSIYQANLREKTKQMKAMASELNMYQAQVNEYKYEIERLVRELNEMKQVFFDRRKKEQADRARTMKASMYGPSLLDQLPGGSGTGSGGMATGGGVGMS", "sequence_length": 863, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4530e13f9e330f86adeeae46b536b7f692bdac79c62fde74c7cedef4685f0278", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A8HUA1.json", "taxon_id": "3055", "uniprot_accession": "A8HUA1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-localization-to-motile-cilium-go0120229.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0120229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-localization-to-motile-cilium-go0120229.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/sperm-mitochondrial-sheath-assembly-go0120317.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0120317", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/sperm-mitochondrial-sheath-assembly-go0120317.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cilia-and-flagella-associated-protein-58-central-coiled-coil-ipr049270.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049270", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cilia-and-flagella-associated-protein-58-central-coiled-coil-ipr049270.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cfap58-cc-pf21771.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF21771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cfap58-cc-pf21771.yaml" } ], "pfam_ids": [ "PF21771" ], "protein_name": "Cilia- and flagella-associated protein 58", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTEDKAEKVMPEETAFEEIEKDFQEVLSELSGDKSLEKFRTEYEKLHSIMKKSYENEKRLMAKCRELNAEIVVNSAKVATALKLSQDDQTTIASLKKEIEKAWKMVDSAYDKEQKAKETILALKEEIVNLTKLVEQGSGLSMDQDSNIRDLLKFKEEVTKERDQLLSEVVKLRENLAQTIEKQQAAEHAKEEAEMAISQFQQEIQHRQNEASRESRKKEKLEKELRQIQTDMDGRQAEIKAMQQYMHKSKEELQRLEQQLKEQKILNERAAKEVEQFQMRNAKLQQENDQHTLTCEQLSQENQQKALELKAKEDEIHQMRLDLGKLNKIREQIHKKLHQLDDQKAEVEQQKDTLKNQILGLEREVESSKKQAELDKKAMEELLRERDILNKNMLKAVSATQKQVDLVKLHEQAKKNLEEEIQNYKDEAQKQRKIIFQLEKERDRYINEASDLTQRVLANMEDIKVREIQIFDYRKKIAESETKLKQQQNLYEAVRSDRNLYSKNLVEAQDEITEMKRKLKIMTHQVDQLKEEISAKEAALVKLHLEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEVEERKLLRIIAEADGERVRQKKELDQVISERDILGSQLVRRNDELALLYEKIKIQQSVLNKGETQYNQRVEDMRILKLEIKKLRREKGILARSVANVEELRQELYHMQREFLKERTRCRALEEELENPMNVHRWRKLEASDPSTFELIQKIHTLQKRLISKTEEVVEKELLLQEKEKLYVELKHILARQPGPEAAEQLQIYRHTLREKTKQLKVLSSELNMYESQSQEYKYEIERLGNELMSLKKKYLAQKRKELVLKNKDRMSMNNIFSETKKSVPRFTGGGFPLHQATKVKF", "sequence_length": 873, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b8faad4065f15993db46473cbcd9f5781427befcc243836ae41b4a4187321d84", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B2RW38.json", "taxon_id": "10090", "uniprot_accession": "B2RW38", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/protein-localization-to-motile-cilium-go0120229.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0120229", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/protein-localization-to-motile-cilium-go0120229.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/sperm-mitochondrial-sheath-assembly-go0120317.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0120317", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/sperm-mitochondrial-sheath-assembly-go0120317.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/cilia-and-flagella-associated-protein-58-central-coiled-coil-ipr049270.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049270", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/cilia-and-flagella-associated-protein-58-central-coiled-coil-ipr049270.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cfap58-cc-pf21771.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF21771", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cfap58-cc-pf21771.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5T655", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF21771" ], "protein_name": "Cilia- and flagella-associated protein 58", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "10300a4daf30c3eab1567ab03dd4738ee371d379e1be0fb8e49177655cec0fa3", "sequence_version": 1, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MAEEKGGKQVLEESAFEEMERDFQGVLHELSGDKSLEKFRIEYERLHAVMKKSYDNEKRLMAKCRELNAEIVVNSAKVATALKLSQDDQTTIASLKKEIEKAWKMVDSAYDKEQKAKETILALKEEIVNLTKLVEQGSGLSMDQHSNIRDLLRFKEEVTKERDQLLSEVVKLRESLAQTTEQQQETERSKEEAEHAISQFQQEIQQRQNEASREFRKKEKLEKELKQIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQENQQKALELKAKEEEVHQMRLDIGKLNKIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKKQAELDRKAMDELLRERDILNKNMLKAVNATQKQTDLVKLHEQAKRNLEGEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKVLMNMEDIKVRETQIFDYRKKIAESEIKLKQQQNLYEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEAEERKLLRIIAEADGERLRQKKELDQVISERDILGSQLVRRNDELALLYEKIKIQQSVLNKGESQYNQRLEDMRILRLEIKKLRREKGILARSMANVEELRQEFFHMQRELLKERTRCRALEEELENPLNVHRWRKLEASDPNAYELIQKIHTLQKRLISKTEEVVEKELLLQEKEKLYMELKHVLARQPGPEAAEQLKLYRRTLHDKKQQLKVLSSELNMYEVQSKEYKYEVEKLTNELQNLKKKYLAQKRKEQLQKNKDTAPMDNTFLMVKPNGPGFTGGGFPLRSTKMTF", "sequence_length": 872, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "10300a4daf30c3eab1567ab03dd4738ee371d379e1be0fb8e49177655cec0fa3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5T655.json", "taxon_id": "9606", "uniprot_accession": "Q5T655", "uniprot_release": "2026_03" } ], "pfam_id": "PF21771", "short_name": "CFAP58_CC", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 5, "discovery_scanned": true, "example_count": 5, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/outer-dynein-arm-docking-complex-go0120228.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0120228", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/outer-dynein-arm-docking-complex-go0120228.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/odad1-central-coiled-coil-region-ipr049258.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/odad1-central-coiled-coil-region-ipr049258.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": 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"qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8BSN3", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF21773" ], "protein_name": "Outer dynein arm-docking complex subunit 3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "2b3ad79b2887c3c1e0829727fdd5aef549aa0438acde3072381b68c8890702f5", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MTSPLCWAAATTTVTSPEQAPAPSSKAKGSKVHRSKSMGRAQAWPAHHPKSATSFHAMKSSVHAQVLELQRKIQLLEGDRKAFYESSQWNMKKNQDTINQLQEETKALHVQLKDLLQGDSKVIQAIIQEWKSEKPFLKNRTCEQALEHLEHQLREKMNQLNALRHQVILRQKRLEDLRLQHSLRQLEMAEVQDSNMEAAKTMRNLENRLEKARMKAEEAEHITNVYLQLKSYLQEESLNLESRLDSMEAEVMNTKHEVQELKVVNQEAINARDIAKNQLQYLEESAIRDRKKREHYITDCKKRAEEKKLQTERMERKTHRDHVLLQSEDTIQDHQRHREEELRQRWSMYQMEVMFGKVKDATGVAESHAVVRRFLAQDETFTQLENLKKDNELALAKLKEEKQRLQRELENLKYSGDATLVSQRRLHEEMQKTFKKEEQRHNDVHERLEHTSRILQLVKDCLEHLANKLSHVKLDDTVLAGKKLDRDSEDYAYNLLVVVQEKLLKLQDQLESQDVPELLRHIADREFLATLEGKLPLYNTRILLPVASVKDKFFDEEESEDDDRDVVTRAAFKLRSQKLIEARSKKRNRLRRS", "sequence_length": 593, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "2b3ad79b2887c3c1e0829727fdd5aef549aa0438acde3072381b68c8890702f5", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BSN3.json", "taxon_id": "10090", "uniprot_accession": "Q8BSN3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus 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"892439046c0df1f748a72d17a5ef40c40ed78e8e8e31e1ae5d1f5d244b784fa4", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CDV6.json", "taxon_id": "10090", "uniprot_accession": "Q8CDV6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/odad1-central-coiled-coil-region-ipr049258.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR049258", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/odad1-central-coiled-coil-region-ipr049258.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/odad1-cc-pf21773.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF21773", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/odad1-cc-pf21773.yaml" } ], "pfam_ids": [ "PF21773" ], "protein_name": "Coiled-coil domain-containing protein 63", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf488-n3i-pf22752.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF22752", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf488-n3i-pf22752.yaml" } ], "pfam_ids": [ "PF22752" ], "protein_name": "Uncharacterized protein Mb3100c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFDEFASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR", "sequence_length": 118, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2201323ea27d12d4d25f180f03afa76eba28315b374096402941251b376639ce", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P65064.json", "taxon_id": "233413", "uniprot_accession": "P65064", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf488-n3i-pf22752.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF22752", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf488-n3i-pf22752.yaml" } ], "pfam_ids": [ "PF22752" ], "protein_name": "Uncharacterized protein YeaO", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIQCKRVYDPAEQSDGYRILVDRLWPRGIKKTDLALDEWDKEITPSTELRKAFHGEVVDYATFREQYLAELAQHEQEGKRLADIAKKQPLTLLYSAKNTTQNHALVLADWLRSL", "sequence_length": 115, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fbbe09dafabd6dad56b3d6f9665176728b797dc197c3155eda947c7360de8cad", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P76243.json", "taxon_id": "83333", "uniprot_accession": "P76243", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf488-n3i-pf22752.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF22752", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf488-n3i-pf22752.yaml" } ], "pfam_ids": [ "PF22752" ], "protein_name": "Uncharacterized protein 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{ "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF22791", "short_name": "DUF7011", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF22792", "short_name": "DUF7012", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF22793", "short_name": "DUF7013", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mkrn2-opposite-strand-protein-like-c-terminal-ipr053921.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053921", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/mkrn2-opposite-strand-protein-like-c-terminal-ipr053921.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/mkrn2-opposite-strand-protein-like-n-terminal-ipr053922.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053922", "section": "canonical_examples", "url": 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"70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-like-n-pf15025.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-like-n-pf15025.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/polo-box-4-pf22834.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22834", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/polo-box-4-pf22834.yaml" } ], "pfam_ids": [ "PF15016", "PF15025", "PF22833", "PF22834" ], "protein_name": "Uncharacterized protein C5orf34 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGMAAEVRMVLYEDDSVQVHYACGSTLQLSPCGSEFLFEKALPPSTHPLEQPERIRQRTHFVISNYREQLQRALDFRNSSATCPFLSESIIPPERKKHIFIDFSEVEWPSLDRDDCIMYSESGVVKITSLDGHAYLCLPRSQHEFTVHFLCKVSQRPDSSGILSETQNQDPKNKLVEKTRKVCRCGNLSEQTLRNKENEPPYQILKSKNASVNTCCVNDSEGRGELPSLGTNHRCVYAWVKQAWSVAACPEAWKHPLSLALRFYNKVRAASEIDADFPASSIVTSDCPEERGTEVSVLPRALLLSCPAPHMHRWTFCDSLLQRQPDAEDFSYPELVKVVWYKGVTYRLTHKNVNSIEIFPGDGSVFKSEGAHFGNYFTYYPSQEESEKREEKTYSVNNLPPDRPGNFFSVRSLIKQATRILQHCAKIRLSLSHNYRVCCWKMAPGVSVSTILPVLLKESLIPGVGRFLAYSDDKVHAVFLDGVTVTLNWHLSSSAEKKQVDQGLSFGWCRLTFPDGQDQLIPTEHPGAYERYVTSVISWCRGLTQTSPRQVPTHLSPALKENWSVASELEKIQKFNWLLENSGVLNLTSSKNEQCSGHCKSGSSETLLEATNEERVSVALKRTSEILQDIDRLLSLSRK", "sequence_length": 639, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e9c44186a82f7eac60aefdd4361c75189564786ab5b99cf2bcdd97d3e89def30", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3UJC8.json", "taxon_id": "10090", "uniprot_accession": "Q3UJC8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-2nd-pf22833.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF22833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-2nd-pf22833.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-c-pf15016.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15016", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-c-pf15016.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-like-n-pf15025.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-like-n-pf15025.yaml" } ], "pfam_ids": [ "PF15016", "PF15025", "PF22833", "PF22834" ], "protein_name": "Uncharacterized protein C5orf34 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGTAAEVRMVLYEDDSVQVNYADGSTLQLSPCGSEFLFEKAPPPSTHPLEQPERIRQRTHFVISNYREQLQRALDFRNSSATCPFLSESIIPSERKKRVFIDFSEVEWPSPDRDDCITYSESGIVKITSLDGHAYLCLPRSQHEFTVHFLCKVSQKPDSSVMPPETKNRVPKEELVGKTRNVCRSGRLSGQRLRNKENEPPRQLLTSKNASANIHCVSETEGREELPSPGTKRRYVHVWVKQSWSAASCPEEWKYPLSLGLRFYNKVPAASAADAEVPVSGIVTSDNPEERGTGVSVLPRALLLSCSAPHMHRWNFCDSLLQRQSDAEEYSYPELIKVVWYKGVTYRLTHKNVNSIEIFPGDGSVFKSEGTHFGNYFTYSSQDNSGKREEKTYSVNNLPPDRPGNLYSVRSLIKQATRILQHCAKIRLSLSHNYRVCCWRMAPGVNVSSILPVLLKESLIPGVGRFLAYSDDKVHAVFLDGVTLTLNWDLSSSAEKTQVDQGLRLRWCRLTFPDGQDQLIQTEHPGVYERYVTSVVTWCRRLTQTSSRHVSPRLSPVPEENWSVASELEKIQKFNWLLENSGVLNLTSGKKNEQCSSDHCKPGSSETLPEATNEESVSVALKRTSEVLQDIDYLLSLTRK", "sequence_length": 640, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99a7a9f69334df974463b046b975337becdf030f9ed3fbb2cf56313c46bc64bd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q6AYM1.json", "taxon_id": "10116", "uniprot_accession": "Q6AYM1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-c-terminal-ipr027865.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027865", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-c-terminal-ipr027865.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-domain-ipr053900.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053900", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-domain-ipr053900.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-n-terminal-ipr027830.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR027830", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-n-terminal-ipr027830.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c5orf34-like-second-domain-ipr053899.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053899", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c5orf34-like-second-domain-ipr053899.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-2nd-pf22833.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF22833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-2nd-pf22833.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-c-pf15016.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15016", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-c-pf15016.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/c5orf34-like-n-pf15025.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF15025", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/c5orf34-like-n-pf15025.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/polo-box-4-pf22834.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22834", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/polo-box-4-pf22834.yaml" } ], "pfam_ids": [ "PF15016", "PF15025", "PF22833", "PF22834" ], "protein_name": "Uncharacterized protein C5orf34", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAAELRMILYEDDSVQVQYVDGSTLQLSPCGSEFLFEKSPPVSAHPLEQPERIRQRTHFVISTYREQLQRALDFRNSSATCPFLSETIIPSERKKHIFIDITEVRWPSLDTDGTMIYMESGIVKITSLDGHAYLCLPRSQHEFTVHFLCKVSQKSDSSAVLSETNNKAPKDKLVEKTGKICIRGNLPGQRLKNKENEFHCQIMKSKETLKKMSCVNGTEGREELPSPGTKHTCVYTWVKQCWSVAACPEEWKYPLSLALHFHNKISNMSKIDAHITQSRFLTSDISEERGKVVSVLPRALSLSCPVPHLHRWNFCDSLLQRQSDEYSYPELVKMVWYKGVTYRLTHQNMNSIEIYSGDGSVFKSEGAYFGNYFTYYSIQEGSGKREEKTYSVNNLPPDRPGSPFTVGSLIKQATRILQHCVKMRLSLSHNYRICCWKMVPGINDSNILPLVLKESLIPSVGRFLAYSDDKVHAIFLDGITLTLNWNFSSPIEKRQVNQGLNLGWCKLTFPDGQEQLIQIEHPEPYERYVTTVTSWCRRLTQTSPREMPTHSSSSVLQENWSVASELEKIQKFNLLLENSGILNQISNKKNEQQSFDHYKPGSSETLLGEVNENRVSIALKKTSEILHDIDCLLSNSKK", "sequence_length": 638, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "07bb907d8c29021e34a9f562e5efe481cc86543ba2507b883dda33a5159fd87a", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q96MH7.json", "taxon_id": "9606", "uniprot_accession": "Q96MH7", "uniprot_release": "2026_03" } ], "pfam_id": "PF22833", "short_name": "C5orf34_2nd", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF22839", "short_name": "DUF7015", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF22845", "short_name": "DUF3097_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF22858", "short_name": "DUF7016", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF22860", "short_name": "DUF7017", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF22872", "short_name": "DUF7018", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF22880", "short_name": "DUF7019", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF22885", "short_name": "DUF7020", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF22886", "short_name": "DUF7021", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF22887", "short_name": "DUF7022", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7023-ipr053954.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053954", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7023-ipr053954.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7023-pf22894.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF22894", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7023-pf22894.yaml" } ], "pfam_ids": [ "PF12349", "PF22894" ], "protein_name": "Protein dispatched homolog 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSEDDPLLQDVWLEEEQPEDEACRGIPGPGLQSGAQGCWRRWTLPSRPPTLGFWSTLGWAFTNPCCAGLVLFLGCSIPMVLSAFMFLYYPPLDIDISYNAFEIRNHEASQRFDALALALKSQFGSWGRNRRDLADFTSETLQRLISEQLQQLHLGNHSRPASRAPRSAPRDTVATQTSAANSSERRRREAPSPEGQVTNQSRARRGASRWDYSRTYVSANTQTHAHWRIELIFLARGDAERNIFTSERLVTIHEIERKIMDHPGFREFCWKPHEVLKDLPLGSYSYCSPPSSLMTYFFPTERGGKIYYDGMGQDLADIRGSLELAMTHPEFYWYVDEGLSVDNLKSSLLRSEILFGAPLPNYYSVDDRWEEQRAKFQSFVVTYVAMLAKQSTSKVQVLYGGTDLFDYEVRRTFNNDMLLAFISSSCIAALVYILTSCSVFLSFFGIASIGLSCLVALFLYHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINTYRQATHLEDPQLRMIHTIQTAGKATFFTSLTTAAAYAANVFSQIPAVHDFGLFMSLIVTCCWLAVLFTMPAALGLWSLYMAPLESSCQNSCHQKCGRKSSLHFPGDLFTAPERAGGGPAQGPLPYLDDDIPLLNVEDEPASLELGDVSLVSVHCEGLQPTPDANSRGQLLAQLQELLHHWVLWAAVKSRWVIVGLFASILILSLVFASRLRPASRAPLLFRPDTNIQVLLDLKYNLSAEGISCITCSGLFQEKPHSLQNNVRTSLEKKKRGSGVSWASRTETTAQESMSTVYISKVKSKGHPAVYRLSLNASLPAPWQAVSPGDGEVPSFQVYRAPFGDFTKKLTACMSTVGLLQAASPSRKWMVTALACDARRGWKFDFSFYVATKEQQHTRKLYFAQSHKPPFHGRLCVAPPGCLLSSSPDGPTKGFFYVPSDKVPKARISATFGFNPCVNTGCGKPAVRPLVDTGAMVFVVFGIIGLNRTQQMDNHVIGDPGSVIYDSSFDLFKEIGHLCRLCKAIAGNSELVKPGGAQCLPSGYSISSFLQMLHPECKELPEPNLLPGQLSHGAVGVKEGRVQWISMAFESTTYKGKSSFQTYSDYLRWESFLRQQLQTFPEGSALHRGFQTCEHWKQIFMEIIGVQSALYGLVLSLLICVAAVAVFTTHVLLLLPVLLSILGIVCLVVTIMYWSGWEMGAVEAISLSILVGSSVDYCVHLVEGYLLAGENLPPQLSQDPSSQRQWRTLEAVRHVGVAIVSSALTTVIATVPLFFCIIAPFAKFGKIVALNTGVSILYTLTVSTALLGIMAPGSFTRTRTSFLKALGAVLLAGALGLGACLVLLRSGYKIPLPSGATL", "sequence_length": 1347, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "01b339af28fc865453d183c22867b5d0d169e5e4ae1e256e75d92cfdd4aee097", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A3KFU9.json", "taxon_id": "10090", "uniprot_accession": "A3KFU9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Gallus gallus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7023-pf22894.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF22894", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7023-pf22894.yaml" } ], "pfam_ids": [ "PF12349", "PF22894" ], "protein_name": "Protein dispatched homolog 3", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDTEDDPLLQDAWLDEEDEEVAFSSRKRREGALLCGKSSCRVRPLRVTLPVSGFWNIVGWIFTNPYCAGFILFLGCAIPAVLAVVMFLHYPALDIDISYNAFEIRNHESSQRFDALALALKSQFGSWGRNRRDLADFTSETLQRLIFEQLQQLHLNASHLQVSTRAKRSAPQGRTSSPEPRAHPHPGNETSRVTRGAPRWDYSNTYISANTQTHAHWRIELIFLARGDSENNIFTTERLVTIHEVERKIMDHPRFREFCWKPHEVLKDLPLGSYSYCSPPSSLMTYFFPTERGGKIYYDGMGQDLADIQGSLELAMTHPEFYWYVDEGLSAENKKSSLLRSEILFGAPLPNYYSVEDRWEEQRHKFQNFVVTYVAMLAKQSTSKVQVLYGGTDLFDYEVRRTFNNDMLLAFISSSCIAVLVYILTSCSVFLSFFGIASIGLSCLVALFLYHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINTYRQATHLKDLRLRMIHTIQTAGKATFFTSLTTAAAYAANIFSQIPAVHDFGLFMSLIVSCCWVAVLFTMPAALGIWTLYVSPLESSCQNSCSQKCTKKSTLHLAEDLFVASEGTSRAGRETLPYLDDDIPLLSVEEEPVSLEMGDVPLVSVMPENLQLPVEKSNRGHLIAHLQELLEHWVLWSAVKSRWVIVGLFLLVLLLSIFFASRLRPASRAPVLFRPDTNIQVLLDLKYNLSAEGISCITCSGLFQEKPHSLQNNFRTSLEKKKRGSASPWGSKGSISDTGQQDLQGTVYISKSRSKGRPAIYRFSLNASIPAPWQMVSPGDGEVPSFQVYRVPFGNFTRKLTACVSTVGLLKQTSPRKWMMTTLSCDSKRGWKFDFSFYVAAKEQQRTRKLYFAQSHKPPYHGRVCVAPPGCLLSSSPDGPTKGILYVPSEKAAPKARLSATSGFNPCMNMGCGKPAVRPLVDTGAMVFVVFGIRGVNRTKNSDNHVIGDMGSVIYDDSFDLFKEIGNLCRLCKAIASNTELVKPGGAQCLPSGYSISSFLQMLHPECKNIPEPNLLPGQLSHGAVGVKDGKVQWISMAFESTTYKGKSSFQTYADYLKWETFLQQQLQLFPEGSALRHGFQTCEHWKQIFMEIIGVQSALYGLILSLVICVAAVAVFTTHILLLLPVLLSILGVVCLVVTIMYWSGWEMGAVEAISLSILVGSSVDYCVHLVEGYLLAGENLPLHHAEDPTACRQWRTIEAIRHVGVAIVSSAVTTVIATVPLFFCIIAPFAKFGKIVALNTGVSILYTLTVSTALLSIMGPGTFTRSRTSCLKAVAGVLLAGLLGLCICLALLKGGFKIPLPNGTAL", "sequence_length": 1338, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "cb977da21887189d168c2c0a6f066e5d2eda531c670b03b49f43e188a144ee44", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B9U3F2.json", "taxon_id": "9031", "uniprot_accession": "B9U3F2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7023-ipr053954.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR053954", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7023-ipr053954.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/membrane-transport-protein-mmpl-domain-ipr004869.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR004869", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/membrane-transport-protein-mmpl-domain-ipr004869.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7023-pf22894.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF22894", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7023-pf22894.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/mmpl-pf03176.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03176", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/mmpl-pf03176.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q9P2K9", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF03176", "PF12349", "PF22894" ], "protein_name": "Protein dispatched homolog 3", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "342aa4f075b1c0917099a6225914cd96adaa4538bf8276efd7cdb6493997b5b3", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MDTEDDPLLQDVWLEEEQEEEEATGETFLGAQKPGPQPGAGGQCCWRHWPLASRPPASGFWSTLGWAFTNPCCAGLVLFLGCSIPMALSAFMFLYYPPLDIDISYNAFEIRNHEASQRFDALTLALKSQFGSWGRNRRDLADFTSETLQRLISEQLQQLHLGNRSRQASRAPRVIPAASLGGPGPYRDTSAAQKPTANRSGRLRRETPPLEDLAANQSEDPRNQRLSKNGRYQPSIPPHAAVAANQSRARRGASRWDYSRAYVSANTQTHAHWRIELIFLARGDAERNIFTSERLVTIHEIERKIMDHPGFREFCWKPHEVLKDLPLGSYSYCSPPSSLMTYFFPTERGGKIYYDGMGQDLADIRGSLELAMTHPEFYWYVDEGLSADNLKSSLLRSEILFGAPLPNYYSVDDRWEEQRAKFQSFVVTYVAMLAKQSTSKVQVLYGGTDLFDYEVRRTFNNDMLLAFISSSCIAALVYILTSCSVFLSFFGIASIGLSCLVALFLYHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINTYRQATHLEDPQLRMIHTVQTAGKATFFTSLTTAAAYAANVFSQIPAVHDFGLFMSLIVSCCWLAVLVTMPAALGLWSLYLAPLESSCQTSCHQNCSRKTSLHFPGDVFAAPEQVGGSPAQGPIPYLDDDIPLLEVEEEPVSLELGDVSLVSVSPEGLQPASNTGSRGHLIVQLQELLHHWVLWSAVKSRWVIVGLFVSILILSLVFASRLRPASRAPLLFRPDTNIQVLLDLKYNLSAEGISCITCSGLFQEKPHSLQNNIRTSLEKKRRGSGVPWASRPEATLQDFPGTVYISKVKSQGHPAVYRLSLNASLPAPWQAVSPGDGEVPSFQVYRAPFGNFTKKLTACMSTVGLLQAASPSRKWMLTTLACDAKRGWKFDFSFYVATKEQQHTRKLYFAQSHKPPFHGRVCMAPPGCLLSSSPDGPTKGFFFVPSEKVPKARLSATFGFNPCVNTGCGKPAVRPLVDTGAMVFVVFGIIGVNRTRQVDNHVIGDPGSVVYDSSFDLFKEIGHLCHLCKAIAANSELVKPGGAQCLPSGYSISSFLQMLHPECKELPEPNLLPGQLSHGAVGVREGRVQWISMAFESTTYKGKSSFQTYSDYLRWESFLQQQLQALPEGSVLRRGFQTCEHWKQIFMEIVGVQSALCGLVLSLLICVAAVAVFTTHILLLLPVLLSILGIVCLVVTIMYWSGWEMGAVEAISLSILVGSSVDYCVHLVEGYLLAGENLPPHQAEDARTQRQWRTLEAVRHVGVAIVSSALTTVIATVPLFFCIIAPFAKFGKIVALNTGVSILYTLTVSTALLGIMAPSSFTRTRTSFLKALGAVLLAGALGLGACLVLLQSGYKIPLPAGASL", "sequence_length": 1392, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "342aa4f075b1c0917099a6225914cd96adaa4538bf8276efd7cdb6493997b5b3", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9P2K9.json", "taxon_id": "9606", "uniprot_accession": "Q9P2K9", "uniprot_release": "2026_03" } ], "pfam_id": "PF22894", "short_name": "DUF7023", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli (strain K12)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/molecular_function/go/phosphatidylglycerol-membrane-oligosaccharide-glycerophosphotransferase-activity-go0008960.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0008960", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/phosphatidylglycerol-membrane-oligosaccharide-glycerophosphotransferase-activity-go0008960.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/glucan-biosynthetic-process-go0009250.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0009250", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/glucan-biosynthetic-process-go0009250.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/protein_family/ncbifam/phosphatidylglycerol-membrane-oligosaccharide-glycerophosphotransferas-nf003000.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "NCBIfam:NF003000", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/phosphatidylglycerol-membrane-oligosaccharide-glycerophosphotransferas-nf003000.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/lipoteichoic-acid-synthase-like-lipoteichoic-acid-lta-is-an-important--cd16015.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd16015", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/lipoteichoic-acid-synthase-like-lipoteichoic-acid-lta-is-an-important--cd16015.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7024-ipr054288.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR054288", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7024-ipr054288.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7024-pf22895.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF22895", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7024-pf22895.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:P39401", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00884", "PF22895", "PF30375", "PF30432" ], "protein_name": "Phosphoglycerol transferase I", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "ea674df27d9b39c3473b1cf4e3095257a7c65c445785d4776f4cf6f3abdb3ace", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MSELLSFALFLASVLIYAWKAGRNTWWFAATLTVLGLFVVLNITLFASDYFTGDGINDAVLYTLTNSLTGAGVSKYILPGIGIVLGLTAVFGALGWILRRRRHHPHHFGYSLLALLLALGSVDASPAFRQITELVKSQSRDGDPDFAAYYKEPSKTIPDPKLNLVYIYGESLERTYFDNEAFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVASQCGIPLFAPFEGNASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLYGSEELKSVVADPHYRNDWGFYDDTVLDEAWKKFEELSRSGQRFSLFTLTVDTHHPDGFISRTCNRKKYDFDGKPNQSFSAVSCSQENIATFINKIKASPWFKDTVIVVSSDHLAMNNTAWKYLNKQDRNNLFFVIRGDKPQQETLAVKRNTMDNGATVLDILGGDNYLGLGRSSLSGQSMSEIFLNIKEKTLAWKPDIIRLWKFPKEMKEFTIDQQKNMIAFSGSHFRLPLLLRVSDKRVEPLPESEYSAPLRFQLADFAPRDNFVWVDRCYKMAQLWAPELALSTDWCVSQGQLGGQQIVQHVDKTTWQGKTAFKDTVIDMARYKGNVDTLKIVDNDIRYKADSFIFNVAGAPEEVKQFSGISRPESWGRWSNAQLGDEVKIEYKHPLPKKFDLVITAKAYGNNASRPIPVRVGNEEQTLVLGNEVTTTTLHFDNPTDADTLVIVPPEPVSTNEGNILGHSPRKLGIGMVEIKVVEREG", "sequence_length": 763, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "ea674df27d9b39c3473b1cf4e3095257a7c65c445785d4776f4cf6f3abdb3ace", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P39401.json", "taxon_id": "83333", "uniprot_accession": "P39401", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Shigella flexneri", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7024-pf22895.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF22895", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7024-pf22895.yaml" } ], "pfam_ids": [ "PF00884", "PF22895", "PF30375", "PF30432" ], "protein_name": "Phosphoglycerol transferase I", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSELLSFALFLASVLIYAWKAGRNTWWFAATLTVLGLFVVLNITLFASDYFTGDGINDAVLYTLTNSLTGAGVSKYILPGIGIVLGLTAVFGALGWILRRRRHHPHHFGYSLLALLLALGSVDASPAFRQITELVKSQSRDGDPDFAAYYKEPSKTIPDPKLNLVYIYGESLERTYFDNEAFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVASQCGIPLFAPFEGNASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLYGSEELKSVVADPHYRNDWGFYDDTVLDEAWKKFEELSRSGQRFSLFTLTVDTHHPDGFISRTCNRKKYDFDGKPNQSFSAVSCSQENIATFINKIKASPWFKDTVIVVSSDHLAMNNTAWKYLNKQDRNNLFFVIRGDKPQQKTLAVKRNTMDNGATVLDILGGDNYLGLGRSSLSGQSMSEIFLNIKEKTLAWKPDIIRLWKFPKEMKEFTIDQQKNMIAFSGSHFRLPLLLRVSDKRVEPLPESEYSAPLRFQLADFAPRDNFVWVDSCYKMAQLWAPELALSTDWCVSQGQLGGQQIVQHVDKTTWKSKTAFKDTVIDMARYKGNVDTLKIVDNDIRYKADSFIFNVAGAPEEVKQFSGISRPESWGRWSNAQLGDEVKIEYKHPLPKKFDLVITAKAYGNNASRPIPVRVGNEEQTLVLGNEVTTTTLHFDNPTDADTLVIVPPEPVSTNEGNILGHSPRKLGIGMVEIKVVEREG", "sequence_length": 763, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fcad1315b4ade519c685711ac93cfee556cb2588c4c5fa35e11d7220f400398c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q83IH7.json", "taxon_id": "623", "uniprot_accession": "Q83IH7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli O157:H7", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7024-pf22895.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF22895", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7024-pf22895.yaml" } ], "pfam_ids": [ "PF00884", "PF22895", "PF30375", "PF30432" ], "protein_name": "Phosphoglycerol transferase I", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSELLSFALFLASVLIYAWKAGRNTWWFAATLTVLGLFVVLNITLFASDYFTGDGINDAVLYTLTNSLTGAGVSKYILPGIGIVLGLTAVFGALGWILRRRRHHPHHFGYSLLALLLALGSVDASPAFRQITELVKSQSRDGDPDFAAYYKEPSKTIPDPKLNLVYIYGESLERTYFDNEAFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVASQCGIPLFAPFEGNASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLYGSEELKSVVADPHYRNDWGFYDDTVLDEAWKKFEELSRSGQRFSLFTLTVDTHHPDGFISRTCNRKKYDFDGKPNQSFSAVSCSQENIATFINKIKASPWFKDTVIVVSSDHLAMNNTAWKYLNKQDRNNLFFVIRGDKPQQETLAVKRNTMDNGATVLDILGGDNYLGLGRSSLSGQSMSEIFLNIKEKTLAWKPDIIRLWKFPKEMKEFTIDQQKNMIAFSGSHFRLPLLLRVSDKRVEPLPESEYSAPLRFQLADFAPRDNFVWVDRCYKMAQLWAPELALSTDWCVSQGQLGGQQIVQHVDKTTWKSKTAFKDTVIDMARYKGNVDTLKIVDNDIRYKADSFIFNVAGAPEEVKQFSGISRPESWGRWSNAQLGDEVKIEYKHPLPKKFDLVITAKAYGNNASRPIPVRVGNEEQTLVLGNEVTTTTLHFDNPTDADTLVIVPPEPVSTNEGNILGHSPRKLGIGMVEIKVVEREG", "sequence_length": 763, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f07f6dfd6a31858a1b80d12d92f6b9b5bf281a7cab9c6ce88a47aa8c9314872b", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8XB59.json", 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"qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22988", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pwwp-kdm3b-pf22988.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tudor-kdm3b-pf22987.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22987", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tudor-kdm3b-pf22987.yaml" } ], "pfam_ids": [ "PF02373", "PF22987", "PF22988", "PF22989" ], "protein_name": "Jumonji domain-containing protein 1C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"data/traits/sequence/domain/interpro/lysine-specific-demethylase-3a-b-like-duf7030-ipr054294.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR054294", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lysine-specific-demethylase-3a-b-like-duf7030-ipr054294.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/lysine-specific-demethylase-3a-b-tudor-domain-ipr054503.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR054503", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lysine-specific-demethylase-3a-b-tudor-domain-ipr054503.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/lysine-specific-demethylase-3b-pwwp-domain-ipr054504.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR054504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lysine-specific-demethylase-3b-pwwp-domain-ipr054504.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pwwp-kdm3b-pf22988.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22988", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pwwp-kdm3b-pf22988.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tudor-kdm3b-pf22987.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22987", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tudor-kdm3b-pf22987.yaml" } ], "pfam_ids": [ "PF02373", "PF22987", "PF22988", "PF22989" ], "protein_name": "Lysine-specific demethylase 3A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLTLGESWPVLVGKRFLSLSAAEGNEGGQDNWDLERVAEWPWLSGTIRAVSHTDVTKKDLKVCVEFDGESWRKRRWIDVYSLQRKAFLVEHNLVLAERKSPEVPEQVIQWPAIMYKSLLDKAGLGAITSVRFLGDQQSVFVSKDLLKPIQDVNSLRLSLTDNQTVSKEFQALIVKHLDESHLLQGDKNLVGSEVKIYSLDPSTQWFSATVVHGNPSSKTLQVNCEEIPALKIVDPALIHVEVVHDNFVTCGNSTRTGAVKRKSSENNGSSVSKQAKSCSEASPSMCPVQSVPTTVFKEILLGCTAATPSSKDPRQQNTPQAANSPPNIGAKLPQGCHKQNLPEELSSCLNTKPEVPRTKPDVCKEGLLSSKSSQVGAGDLKILSEPKGSCIQPKTNTDQESRLESAPQPVTGLPKECLPAKTSSKAELDIATTPELQKHLEHAASTSDDLSDKPEVKAGVTSLNSCAEKKVEPSHLGSQSQNLKETSVKVDNESCCTRSSNKTQTPPARKSVLTDPDKVRKLQQSGEAFVQDDSCVNIVAQLPKCRECRLDSLRKDKDQQKDSPVFCRFFHFRRLQFNKHGVLRVEGFLTPNKYDSEAIGLWLPLTKNVVGTDLDTAKYILANIGDHFCQMVISEKEAMSTIEPHRQVAWKRAVKGVREMCDVCDTTIFNLHWVCPRCGFGVCVDCYRMKRKNCQQGAAYKTFSWIRCVKSQIHEPENLMPTQIIPGKALYDVGDIVHSVRAKWGIKANCPCSNRQFKLFSKPALKEDLKQTSLSGEKPTLGTMVQQSSPVLEPVAVCGEAASKPASSVKPTCPTSTSPLNWLADLTSGNVNKENKEKQLTMPILKNEIKCLPPLPPLNKPSTVLHTFNSTILTPVSNNNSGFLRNLLNSSTAKTENGLKNTPKILDDIFASLVQNKTSSDSSKRPQGLTIKPSILGFDTPHYWLCDNRLLCLQDPNNKSNWNVFRECWKQGQPVMVSGVHHKLNTELWKPESFRKEFGEQEVDLVNCRTNEIITGATVGDFWDGFEDVPNRLKNDKEKEPMVLKLKDWPPGEDFRDMMPSRFDDLMANIPLPEYTRRDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVYVGIPKGQCEQEEEVLRTIQDGDSDELTIKRFIEGKEKPGALWHIYAAKDTEKIREFLKKVSEEQGQDNPADHDPIHDQSWYLDRSLRKRLYQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVIYHAVKDAVAMLKASESSLGKP", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lysine-specific-demethylase-3a-b-like-duf7030-ipr054294.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/lysine-specific-demethylase-3a-b-tudor-domain-ipr054503.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR054503", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lysine-specific-demethylase-3a-b-tudor-domain-ipr054503.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/lysine-specific-demethylase-3b-pwwp-domain-ipr054504.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR054504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lysine-specific-demethylase-3b-pwwp-domain-ipr054504.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/pwwp-kdm3b-pf22988.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22988", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/pwwp-kdm3b-pf22988.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tudor-kdm3b-pf22987.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22987", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tudor-kdm3b-pf22987.yaml" } ], "pfam_ids": [ "PF02373", "PF22987", "PF22988", "PF22989" ], "protein_name": "Lysine-specific demethylase 3B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lysine-specific-demethylase-3a-b-tudor-domain-ipr054503.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/lysine-specific-demethylase-3b-pwwp-domain-ipr054504.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR054504", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/lysine-specific-demethylase-3b-pwwp-domain-ipr054504.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", 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"mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tudor-kdm3b-pf22987.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22987", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tudor-kdm3b-pf22987.yaml" } ], "pfam_ids": [ "PF02373", "PF22987", "PF22988", "PF22989" ], "protein_name": "Lysine-specific demethylase 3A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLTLGESWPVLVGRRFLSLSAADGSDGSHDSWDVERVAEWPWLSGTIRAVSHTDVTKKDLKVCVEFDGESWRKRRWIEVYSLLRRAFLVEHNLVLAERKSPEISERIVQWPAITYKPLLDKAGLGSITSVRFLGDQQRVFLSKDLLKPIQDVNSLRLSLTDNQIVSKEFQALIVKHLDESHLLKGDKNLVGSEVKIYSLDPSTQWFSATVINGNPASKTLQVNCEEIPALKIVDPSLIHVEVVHDNLVTCGNSARIGAVKRKSSENNGTLVSKQAKSCSEASPSMCPVQSVPTTVFKEILLGCTAATPPSKDPRQQSTPQAANSPPNLGAKIPQGCHKQSLPEEISSCLNTKSEALRTKPDVCKAGLLSKSSQIGTGDLKILTEPKGSCTQPKTNTDQENRLESVPQALTGLPKECLPTKASSKAELEIANPPELQKHLEHAPSPSDVSNAPEVKAGVNSDSPNNCSGKKVEPSALACRSQNLKESSVKVDNESCCSRSNNKIQNAPSRKSVLTDPAKLKKLQQSGEAFVQDDSCVNIVAQLPKCRECRLDSLRKDKEQQKDSPVFCRFFHFRRLQFNKHGVLRVEGFLTPNKYDNEAIGLWLPLTKNVVGIDLDTAKYILANIGDHFCQMVISEKEAMSTIEPHRQVAWKRAVKGVREMCDVCDTTIFNLHWVCPRCGFGVCVDCYRMKRKNCQQGAAYKTFSWLKCVKSQIHEPENLMPTQIIPGKALYDVGDIVHSVRAKWGIKANCPCSNRQFKLFSKPASKEDLKQTSLAGEKPTLGAVLQQNPSVLEPAAVGGEAASKPAGSMKPACPASTSPLNWLADLTSGNVNKENKEKQPTMPILKNEIKCLPPLPPLSKSSTVLHTFNSTILTPVSNNNSGFLRNLLNSSTGKTENGLKNTPKILDDIFASLVQNKTTSDLSKRPQGLTIKPSILGFDTPHYWLCDNRLLCLQDPNNKSNWNVFRECWKQGQPVMVSGVHHKLNSELWKPESFRKEFGEQEVDLVNCRTNEIITGATVGDFWDGFEDVPNRLKNEKEPMVLKLKDWPPGEDFRDMMPSRFDDLMANIPLPEYTRRDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVYVGIPKGQCEQEEEVLKTIQDGDSDELTIKRFIEGKEKPGALWHIYAAKDTEKIREFLKKVSEEQGQENPADHDPIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVIYHAVKDAVAMLKASESSFGKP", 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"PF09869", "PF23100" ], "protein_name": "Uncharacterized protein MJ0856", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEMGNGMKDARNLDKQWVVLSELSAELVNRGIKVPEIVFEKLRLANALLSYYILDPHASINILANVERELNYVQSQLFSLCDTELTEKYLDRMIKAIRGEINAKFPVSKSNYNREVKKRGKVEAIRVKLQKEMQIERLSDLGEWHGVIFEYSDEKDKVIIEGNIDRVKRALKDFAFMWKED", "sequence_length": 181, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "39412c3b6803c13704ad676ba5092a61140f2de40222be964e8e17bac7db4ea2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q58266.json", "taxon_id": "243232", "uniprot_accession": "Q58266", "uniprot_release": "2026_03" } ], "pfam_id": "PF23100", "short_name": "DUF2096_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23126", "short_name": "DUF7048", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7049-ipr055477.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055477", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7049-ipr055477.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7050-ipr055478.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055478", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7050-ipr055478.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7049-pf23132.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23132", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7049-pf23132.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7050-pf23133.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23133", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7050-pf23133.yaml" } ], "pfam_ids": [ "PF00010", "PF23132", "PF23133" ], "protein_name": "Putative transcription factor bHLH041", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMHLILSCSYLISMDGYYNEASEEPSSSSSSGSLARSLFHEYRQSVIPLQNGHVPSMAFMNNLPYVEIRPQESQRLAFNDTQRLFYQMKIEASLREWFPEDFNRKSSPANSDYLRPPHYPSSSSSSLSPNNISEYSSLLFPLIPKPSTTTEAVNVPVLPPLAPINMIHPQHQEPLFRNRQREEEAMTQAILAVLTGPSSPPSTSSSPQRKGRATAFKRYYSMISDRGRAPLPSVRKQSMMTRAMSFYNRLNINQRERFTRENATTHGEGSGGSGGGGRYTSGPSATQLQHMISERKRREKLNESFQALRSLLPPGTKKDKASVLSIAREQLSSLQGEISKLLERNREVEAKLAGEREIENDLRPEERFNVRIRHIPESTSRERTLDLRVVLRGDIIRVDDLMIRLLEFLKQINNVSLVSIEARTLARAEGDTSIVLVISLRLKIEGEWDESAFQEAVRRVVADLAH", "sequence_length": 466, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2e7fb2cbdaa3177121cdcad27d779a9841f02d14d6c1a3de233265b01a5f6513", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LTS4.json", "taxon_id": "3702", "uniprot_accession": "Q9LTS4", "uniprot_release": "2026_03" } ], "pfam_id": "PF23132", "short_name": "DUF7049", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7049-ipr055477.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055477", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7049-ipr055477.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7050-ipr055478.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055478", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7050-ipr055478.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7049-pf23132.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23132", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7049-pf23132.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7050-pf23133.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23133", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7050-pf23133.yaml" } ], "pfam_ids": [ "PF00010", "PF23132", "PF23133" ], "protein_name": "Putative transcription factor bHLH041", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMHLILSCSYLISMDGYYNEASEEPSSSSSSGSLARSLFHEYRQSVIPLQNGHVPSMAFMNNLPYVEIRPQESQRLAFNDTQRLFYQMKIEASLREWFPEDFNRKSSPANSDYLRPPHYPSSSSSSLSPNNISEYSSLLFPLIPKPSTTTEAVNVPVLPPLAPINMIHPQHQEPLFRNRQREEEAMTQAILAVLTGPSSPPSTSSSPQRKGRATAFKRYYSMISDRGRAPLPSVRKQSMMTRAMSFYNRLNINQRERFTRENATTHGEGSGGSGGGGRYTSGPSATQLQHMISERKRREKLNESFQALRSLLPPGTKKDKASVLSIAREQLSSLQGEISKLLERNREVEAKLAGEREIENDLRPEERFNVRIRHIPESTSRERTLDLRVVLRGDIIRVDDLMIRLLEFLKQINNVSLVSIEARTLARAEGDTSIVLVISLRLKIEGEWDESAFQEAVRRVVADLAH", "sequence_length": 466, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2e7fb2cbdaa3177121cdcad27d779a9841f02d14d6c1a3de233265b01a5f6513", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9LTS4.json", "taxon_id": "3702", "uniprot_accession": "Q9LTS4", "uniprot_release": "2026_03" } ], "pfam_id": "PF23133", "short_name": "DUF7050", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23136", "short_name": "DUF7051", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gdh2-n-pf23147.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gdh2-n-pf23147.yaml" } ], "pfam_ids": [ "PF00208", "PF23147", "PF23152" ], "protein_name": "NAD-specific glutamate dehydrogenase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSPSAPVPAHKLVDRLKDQTPRHPSPQPTHVSYPKVNGNGHRVLRSATVGYVAPVFQGKAEQMKQVKNIIVQGGWIPETLVDGQIAWFYNELGIDDVYFQLENPQAVANHITSLYAAKVAAFSREDKREEIRLDMEASDHAIYIDTSEPGMTSFDGPRYEHRLESKYLDGDDTSKRFRVETFRSPGVLGQKENSKAALRCYFVYQCLFVDSNADPKETRLEVISDRMFLAKATKNTKQIYQDIIQVAVSRHGPVIEVFDIEGSEEMRLVVAFRSRTAKGIFSALSDLYHYYGVTSSRKYVEQFSNGITVMSIYLRPAANIDGKHPPLEQSIHQITKEISLLYCLPQNKFHNMFASGELSLQETIYAHCVWVFVQHFLNRLGTEYTSLIAALDPKNNSHVEILSKMKKRLRTETFTPDYILEIISSHPQLVRALYASFASVHLRVGSDYDRHLIAPTPVMEVLSDARLKEKITKDVSNEHEEMVMTAFRVFNNAVLKTNFFTPTKVALSFRLNPSFLPEVEYPKPLYGMFLVITSESRGFHLRFKDIARGGIRIVKSRSKEAYQINARNLFDENYGLASTQQRKNKDIPEGGSKGVILLDPKQQDRHREAFEKYIDSILDLLLKAETPGIKNPIVDLYGKEEILFMGPDENTADLVDWATEHARARGAPWWKSFFTGKSPRLGGIPHDSYGMTTLSVREYVKGIYRKLELDPSKIRKMQTGGPDGDLGSNEILLSNETYTAIVDGSGVLCDPNGIDKDELRRLAKARAMISNFDIAKLSKDGYRVLCDDTNVTLPNGEVVHNGTAFRNTYHLRDNGITDMFVPCGGRPESIDLSSVNKLIKDGKSTIPYIVEGANLFITQDAKLRLEEAGCIVYKDASANKGGVTSSSLEVLASLSFDDKGFVTHMCHDSRGNAPEFYQAYVKEVQNKIQDNARLEFEAIWREHEQTGLPRSVLSDKLSLAITSLDEDLQRSELWDNEKIRRSVLADALPNLLINKIGLDTIIERVPDSYLRAIFGSYLASRFVYEFGSSPSQFAFYDFMSKRMGNINKE", "sequence_length": 1050, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "38107791c2f34bc6c7e3c381db634f368c9ae4079f6729cd12c48e416ff1689a", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/P00365.json", "taxon_id": "367110", "uniprot_accession": "P00365", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nad-dependent-glutamate-dehydrogenase-n-terminal-domain-ipr055480.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055480", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nad-dependent-glutamate-dehydrogenase-n-terminal-domain-ipr055480.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/nad-specific-glutamate-dehydrogenase-second-domain-ipr056365.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056365", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/nad-specific-glutamate-dehydrogenase-second-domain-ipr056365.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gdh-2nd-pf23152.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23152", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gdh-2nd-pf23152.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gdh2-n-pf23147.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gdh2-n-pf23147.yaml" } ], "pfam_ids": [ "PF00208", "PF23147", "PF23152" ], "protein_name": "NAD-specific glutamate dehydrogenase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLFDNKNRGALNSLNTPDIASLSISSMSDYHVFDFPGKDLQREEVIDLLDQQGFIPDDLIEQEVDWFYNSLGIDDLFFSRESPQLISNIIHSLYASKLDFFAKSKFNGIQPRLFSIKNKIITNDNHAIFMESNTGVSISDSQQKNFKFASDAVGNDTLEHGKDTIKKNRIEMDDSCPPYELDSEIDDLFLDNKSQKNCRLVSFWAPESELKLTFVYESVYPNDDPAGVDISSQDLLKGDIESISDKTMYKVSSNENKKLYGLLLKLVKEREGPVIKTTRSVENKDEIRLLVAYKRFTTKRYYSALNSLFHYYKLKPSKFYLESFNVKDDDIIIFSVYLNENQQLEDVLLHDVEAALKQVEREASLLYAIPNNSFHEVYQRRQFSPKEAIYAHIGAIFINHFVNRLGSDYQNLLSQITIKRNDTTLLEIVENLKRKLRNETLTQQTIINIMSKHYTIISKLYKNFAQIHYYHNSTKDMEKTLSFQRLEKVEPFKNDQEFEAYLNKFIPNDSPDLLILKTLNIFNKSILKTNFFITRKVAISFRLDPSLVMTKFEYPETPYGIFFVVGNTFKGFHIRFRDIARGGIRIVCSRNQDIYDLNSKNVIDENYQLASTQQRKNKDIPEGGSKGVILLNPGLVEHDQTFVAFSQYVDAMIDILINDPLKENYVNLLPKEEILFFGPDEGTAGFVDWATNHARVRNCPWWKSFLTGKSPSLGGIPHDEYGMTSLGVRAYVNKIYETLNLTNSTVYKFQTGGPDGDLGSNEILLSSPNECYLAILDGSGVLCDPKGLDKDELCRLAHERKMISDFDTSKLSNNGFFVSVDAMDIMLPNGTIVANGTTFRNTFHTQIFKFVDHVDIFVPCGGRPNSITLNNLHYFVDEKTGKCKIPYIVEGANLFITQPAKNALEEHGCILFKDASANKGGVTSSSMEVLASLALNDNDFVHKFIGDVSGERSALYKSYVVEVQSRIQKNAELEFGQLWNLNQLNGTHISEISNQLSFTINKLNDDLVASQELWLNDLKLRNYLLLDKIIPKILIDVAGPQSVLENIPESYLKVLLSSYLSSTFVYQNGIDVNIGKFLEFIGGLKREAEASA", "sequence_length": 1092, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "fb416d9a15d8ee5a2f250ecd46704bc9dfc34a0ecfc1b77aef7f4f466040f7e7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P33327.json", "taxon_id": "559292", "uniprot_accession": "P33327", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyostelium discoideum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gdh-2nd-pf23152.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23152", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gdh-2nd-pf23152.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gdh2-n-pf23147.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23147", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gdh2-n-pf23147.yaml" } ], "pfam_ids": [ "PF00208", "PF23147", "PF23152" ], "protein_name": "Glutamate dehydrogenase 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLNQNLTISQEIAAQPKTQYFTKEDGDALANLLESNPYKEQAVEVKSLLKSERLIESSRVEPEVDWFYCKLGLDSNYFDSTPSIVIARHILSLYAAKMVSHATGAKLEVHLHSKNEGSATFITPSNPGKRDSPAMMIEHAIESHYFGEGYHQDQQLLSPQQVAVAPFPVSPKPPTGTNLPPHGFRLACYRTTGTVSNSSPVHLRLYYLTKPVFPQATNDLSASKNDEILATETDLFKIGDISFIEKSSELTKKIYQEVMNEVVGKQGPVIKHYPYQTNGARLVIAYRRGSTHSYWSAIGELYHFHQMYATHKYVEQFSNGITIYSIYLRPLHPDVDINTKISKIAEQASLVYVLPRTSLTPLFLSHQLSFPEVTYAYVCWKFAYQFLNRYATEYSALAAAIGDDSTKQSMLAQLKTRLSKDTFTEGRVRDAVLQYPELIKILYQDFEKFHFSGSNSNNTQKYDVQHGSEILASIKKTVNNELDSQIFSAILSFNRHLLKTNFYKQTKTALSFRLDPGFLSTKEYVSTPYAVFFVVGSEFRGFHIRFRDISRGGIRIIRSGNSTQYDHNSSSLFDENYNLANTQQSKNKDIAEGGSKGTILLSADHQSKAEVAFHKYIDGLLDLLLPNHEIVDHFAKPEILFLGPDEGTADFMNWASSHAKDRGAHFWKAFTTGKSLSRGGIPHDLYGMTTRSIHQYVLGTLAKLGRNEADCTKFQTGGPDGDLGSNEIKISKDKTIGIVDGSGVLLDPQGLNRDEIGRLASKRQMARYFDKSKLSPQGFFVDVAENDVKLPNGDIVESGLIFRNNFHLNPLCNADIFVPCGGRPESVQLTNVDKMFTATGESRFPIIVEGANLFFTQKARLMIEEKGAIIFKDASANKGGVTSSSLEVLAALALNDEEFDRHMCVKDNVVPEFYENYIKDVHHTIESNARLEFECIWSEHESTKTPRSILSDLLSNKINSLNDSIQTSSLWTDQSLRRKIISAACPKVLLNLLGVDKIMERVPEPYVKAIFGSYLASRFVYKYGLNSNEFAFYTYMETLKQQ", "sequence_length": 1042, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "519922da8a366161013bc2c91d8dc551945ddd27f67255cfa541e6f1dadd1ec9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q54VI3.json", "taxon_id": "44689", "uniprot_accession": "Q54VI3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/gdh-2nd-pf23152.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23152", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gdh-2nd-pf23152.yaml" } ], "pfam_ids": [ "PF00208", "PF23147", "PF23152" ], "protein_name": "Probable NAD-specific glutamate dehydrogenase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYLTKQIPHYSRIHTTQLLTVVNHRTIPFKIRGSFSNCRRYSNFATVPLLERPFKNKSKHNTARASRPFSTQKMLLTKSHPPNMYKDSVFFGYRPIVFSGKQDQKSKVIQCLRTERKTIPDDLVEDEVDRFYNKLGLDDYYFQMEPVSIIADHIEIIYAAKIAAHASHAKEELNIHVKNENEDLAIYLDSSPVTQPELDQSSAVEESISTRYLDPFKLTDPTAYRVESFTSVTNIDRTSTENSNIYTYFVTKCDFVDNPKKDASPDVPTDIASVSDKTFLEKASDNTIEMYQDVMNSVLTRFGPVVRLFDYQGRSEIRLVVGYRRGSIFQYFPSLSKLFRYYGLHSTRTYVEQFSNGVTIISYNFKPELFKNAAVTSINELFSQITREASLLYCLPSTDFQPLFVSEKLSIQEVTYAHCVRIFCEHVMNKLGPEYSSLSAILDHSNNIHAEILETIKRRLSTLAFTRTKIHDTIMQYPGLVHTLFEQFYLEHAINHNSTPHLHRAKSATSLADEASTYSITPMSATALMDLIQKTCTNEEDVSVMEMFVKFNTHLLKTNFFQTTKVALSFRFDPSFLDSTQYKDPLYAMIMSIGNEFRGFHLRFRDVARGGIRLIKSANPEAFGLNARGLFDENYNLAKTQMLKNKDIPEGGAKGVILLGKDCQDKPELAFMKYIDSIIDLLIVNKSQPLVDKLGKPEILFMGPDENTADLVNWATIHAHRRNAPWWKSFFTGKKPTMGGIPHDKYGMTSLSVRCYVEGIYKKLNITDPSKLTKVQTGGPDGDLGSNEIKLSNEKYIAVIDGSGVLYDPAGLDRTELLRLADERKTIDHFDAGKLSPEGYRVLVKDTNLKLPNGEIVRNGTIFRNTAHLRYKADTFVPCGGRPNAININNVEQLIDDHGRPAFKYLVEGANLFITQDAKSVLEKAGVIVIRDASANKGGVTSSSLEVLASLSFDDASFKENMCVHDGKVPTFYADYVNEVKRIIQRNANLEFEAIWKGHSENKIPYTSLSNHLSTEIVKLDHDIYNYEKLWADVGFRNAVLRASIPKTLQAKIGLEKMLERIPESYLRAIFSTYLASRFVYQHVVSSDPFAFFDYISTEMKMLKDA", "sequence_length": 1106, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "09e39468c2c05efb512b9547839fad640bba3ada938180725ba79aabd84d805e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9USN5.json", "taxon_id": "284812", "uniprot_accession": "Q9USN5", "uniprot_release": "2026_03" } ], "pfam_id": "PF23147", "short_name": "GDH2_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23155", "short_name": "DUF7053", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7054-ipr055482.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055482", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7054-ipr055482.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7054-pf23156.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23156", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7054-pf23156.yaml" } ], "pfam_ids": [ "PF23156" ], "protein_name": "Uncharacterized protein At4g22758", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSDSIHRRKVSNPVGNGGRSSRTRRTAFRYVSDKNNRSKSSNKVFERSFSEPSLNRHRDGQSNHLRRPSPMRGLPMEEETKPIVYLPRIRSEVFASSPSLLNLYSPSSSSPINQEGNTKEAPKVIISVAVEGSPGPVRAMVKLSCNVEETIKIVVDKYCKEGRTPKLDRDSAFELHQSHFSIQCLEKREIIGELGSRSFYMRKKAPETGGSFAGISPARTSLIPSSNLIGSCIAQLIGKIMRRTRRIWNILVCVQ", "sequence_length": 255, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "99da546623857577d206eae351b9429ff0aa7742928618b89f6dcceee75189d1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q56XJ7.json", "taxon_id": "3702", "uniprot_accession": "Q56XJ7", "uniprot_release": "2026_03" } ], "pfam_id": "PF23156", "short_name": "DUF7054", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23157", "short_name": "DUF7055", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23158", "short_name": "DUF7056", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23167", "short_name": "DUF7057", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Rattus norvegicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cul7-cul9-n-pf23168.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cul7-cul9-n-pf23168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-cul7-cul9-pf24742.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-cul7-cul9-pf24742.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-cul9-pf26718.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26718", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-cul9-pf26718.yaml" } ], "pfam_ids": [ "PF03256", "PF11515", "PF23168", "PF24742", "PF26557", "PF26718" ], "protein_name": "Cullin-7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVGELRYREFRVPLGPGLHAYPDELIRQRVGHNGHPEYQIRWLILRRGDDGDSSQVDCKAEHILLWMTDDEIYANCHKMLGEDGQVIRPSQESAEAGALDKSVLGEMETDVKSLIQRALRQLEECVGAVPPAPLLHTVHVLSAYASIEPLTGVFKDRRVLDLVMHMLSSPDYQIRWSAGRMIQALSSHDAGTRTQILLSLSQQEAIEKHLDFDSRCALLALFAQATLTEHPMSFEGVQLPQVPGRLLFSLVKRYLCVTFLLDRLNGNAEDQDAQNNFIPEELNAGRGRVELEFSMAMGTLISELVQAMRWDWASSRSESSSPIFQPPPTEFFRPRAQRFRRSRRFRPRTAFASVNTYALYVRDTLRPGMRVRMLEDFEEISAGDEGQFRQSNDGMPPVQVLWDSTGHTYWVHWHMLEILGFEEDIEDVVDIDDQGAMVHGGLGVAPPFQHWKPIAQLFAEPYVVPEEEDREEREHLTQAEWWELFFFIKKLNAEERQHVVELLQEFLEGEHVLDFEILPELTVPVELAQDLMLSLPQQLDDSALRDLFNCYVYRKYGPEVLVGKRNRPFVLDDQLNLFRIETDSEAQDPPSQSASPALRQLVEGLGPSGKLLVDLERALSSEAPQENEVKPCLLQLQEEPQPFLTLMRSLDTPASNKALHLTALRILMQLVNFPEALLLPWHEAMDACMTCLRSPNTDREVLQELIFFLHRLTSTSRDYAVILNQLGARDAISKVLEKHRGKLELAQELRDMVFKCEKHAHLYRKLTTNILGGCIQMVLGQIEDHRRTHRPIQIPFFDVFLRYLCQGSSAEVKKNKYWEKVEVSSNPHRASRLTDRNAKTYWESNGTAGSHFITVHMRPGVLIRQLTLLVAGEDSSYMPAWVVVCGGDSISSVNTELNAVNVMPHASRVILLENLTRFWPIVQIRIKRCQQGGINTRIRGLEVLGPKPTFWPVFREQLCRHTRLFYMVRAQAWSQDIAEDRRSLLHLSSRLNGALRQEQNFADRFLPDEEAALALSKTCWEALVSPLVQNITSPDEDSTSSLGWLLNQYLECREAAYNPQSRAAAFSSRVRHLTHLLVHVEPCEAAPPVVAISQSKGRNRSHDWSSLTTRGLPSSIMRNLTRCWRSVVEEQVNKFLTSSWKDDDFVPRYCERYYILQKSSSELFGPRAAFLLAMRNGCADALLRLPFLRAAHVSEQFARHIDQRIQGSRMGGARGMEMLAQLQRCLESVLILSPLEIATTFEHYYQHYMADRLLSVGSSWLEGAVLEQIGPCFPGRLPQQMLQTLNISEELQRRFHVYQLQQLDQELLKLEDTEKKIQVAHEDSGKEHKSKKEDAAGETAAVAMADEEEEEGKKEEGEEEEGEGEEELEEEEERYYEGTMPEVCVLVLSPRFWPVASVCHMLNPTTCLPSYLRGTINHYSNFYSKSQSHSGLEKESPRQLQWTWQGRAEVQFGDQILHVSTVQMWLLLHLNHLKAVSVESLQALSELPPEVLNKAIGPLTSSRGPLDLQEQKNIPGGVLKIRDDSEEPRPRRGNVWLIPPQTYLKAEDEEGRNLEKRRNLLNCLVVRILKAHGDEGLHIDQLVHLVLEAWEKGPCPPRGLVSSLGRGAACRSSDVLSCILHLLGKGTLRRHDDRPQMLFYAVPITVMEPHTESLNPGSSGPNPPLTFHTLQIRSRGVPYASCTGTQTFSTFR", "sequence_length": 1692, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b81297663434cfc369074fecc93e19d131adea920934359a54a76471ef4430dd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D3ZEF4.json", "taxon_id": "10116", "uniprot_accession": "D3ZEF4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cul7-cul9-n-pf23168.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cul7-cul9-n-pf23168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/anapc10-pf03256.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03256", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/anapc10-pf03256.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/cul7-pf11515.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11515", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cul7-pf11515.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-cul7-cul9-pf24742.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24742", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-cul7-cul9-pf24742.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-cul9-pf26718.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26718", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-cul9-pf26718.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q14999", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00888", "PF03256", "PF11515", "PF23168", "PF24742", "PF26557", "PF26718" ], "protein_name": "Cullin-7", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "6c80b869f5187b8aae38c905aba23ffe0a1b7c64abe443e4bb56d82e634decce", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MVGELRYREFRVPLGPGLHAYPDELIRQRVGHDGHPEYQIRWLILRRGDEGDGGSGQVDCKAEHILLWMSKDEIYANCHKMLGEDGQVIGPSQESAGEVGALDKSVLEEMETDVKSLIQRALRQLEECVGTIPPAPLLHTVHVLSAYASIEPLTGVFKDPRVLDLLMHMLSSPDYQIRWSAGRMIQALSSHDAGTRTQILLSLSQQEAIEKHLDFDSRCALLALFAQATLSEHPMSFEGIQLPQVPGRVLFSLVKRYLHVTSLLDQLNDSAAEPGAQNTSAPEELSGERGQLELEFSMAMGTLISELVQAMRWDQASDRPRSSARSPGSIFQPQLADVSPGLPAAQAQPSFRRSRRFRPRSEFASGNTYALYVRDTLQPGMRVRMLDDYEEISAGDEGEFRQSNNGVPPVQVFWESTGRTYWVHWHMLEILGFEEDIEDMVEADEYQGAVASRVLGRALPAWRWRPMTELYAVPYVLPEDEDTEECEHLTLAEWWELLFFIKKLDGPDHQEVLQILQENLDGEILDDEILAELAVPIELAQDLLLTLPQRLNDSALRDLINCHVYKKYGPEALAGNQAYPSLLEAQEDVLLLDAQAQAKDSEDAAKVEAKEPPSQSPNTPLQRLVEGYGPAGKILLDLEQALSSEGTQENKVKPLLLQLQRQPQPFLALMQSLDTPETNRTLHLTVLRILKQLVDFPEALLLPWHEAVDACMACLRSPNTDREVLQELIFFLHRLTSVSRDYAVVLNQLGARDAISKALEKHLGKLELAQELRDMVFKCEKHAHLYRKLITNILGGCIQMVLGQIEDHRRTHQPINIPFFDVFLRYLCQGSSVEVKEDKCWEKVEVSSNPHRASKLTDHNPKTYWESNGSAGSHYITLHMRRGILIRQLTLLVASEDSSYMPARVVVCGGDSTSSLHTELNSVNVMPSASRVILLENLTRFWPIIQIRIKRCQQGGIDTRIRGLEILGPKPTFWPVFREQLCRHTRLFYMVRAQAWSQDMAEDRRSLLHLSSRLNGALRQEQNFADRFLPDDEAAQALGKTCWEALVSPVVQNITSPDEDGISPLGWLLDQYLECQEAVFNPQSRGPAFFSRVRRLTHLLVHVEPCEAPPPVVATPRPKGRNRSHDWSSLATRGLPSSIMRNLTRCWRAVVEKQVNNFLTSSWRDDDFVPRYCEHFNILQNSSSELFGPRAAFLLALQNGCAGALLKLPFLKAAHVSEQFARHIDQQIQGSRIGGAQEMERLAQLQQCLQAVLIFSGLEIATTFEHYYQHYMADRLLGVVSSWLEGAVLEQIGPCFPNRLPQQMLQSLSTSKELQRQFHVYQLQQLDQELLKLEDTEKKIQVGLGASGKEHKSEKEEEAGAAAVVDVAEGEEEEEENEDLYYEGAMPEVSVLVLSRHSWPVASICHTLNPRTCLPSYLRGTLNRYSNFYNKSQSHPALERGSQRRLQWTWLGWAELQFGNQTLHVSTVQMWLLLYLNDLKAVSVESLLAFSGLSADMLNQAIGPLTSSRGPLDLHEQKDIPGGVLKIRDGSKEPRSRWDIVRLIPPQTYLQAEGEDGQNLEKRRNLLNCLIVRILKAHGDEGLHIDQLVCLVLEAWQKGPCPPRGLVSSLGKGSACSSTDVLSCILHLLGKGTLRRHDDRPQVLSYAVPVTVMEPHTESLNPGSSGPNPPLTFHTLQIRSRGVPYASCTATQSFSTFR", 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"url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-cul7-cul9-pf24742.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/cullin-pf00888.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00888", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/cullin-pf00888.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/tpr-cul9-pf26718.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF26718", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/tpr-cul9-pf26718.yaml" } ], "pfam_ids": [ "PF00888", "PF01485", "PF03256", "PF11515", "PF22191", "PF23168", "PF24742", "PF26000", "PF26557", "PF26718" ], "protein_name": "Cullin-9", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVGERHAGDLMVPLGPRLQAYPEELIRQRPGHDGHPEYLIRWSVLKCGEVGKVGVEEGKAEHILMWLSAPEVYANCPGLLGERALSKGLQHEPAGVSGSFPRDPGGLDEVAMGEMEADVQALVRRAARQLAESGTPSLTAAVLHTIHVLSAYASIGPLTGVFRETGALDLLMHMLCNPEPQIRRSAGKMLQALAAHDAGSRAHVLLSLSQQDGIEQHMDFDSRYTLLELFAETTSSEEHCMAFEGIHLPQIPGKLLFSLVKRYLCVTSLLDQLNSSPELGAGDQSSPCATREKSRGQRELEFSMAVGNLISELVRSMGWARNLSEQGMSPPRPTRSIFQPYISGPSLLLPTIVTTPRRQGWVFRQRSEFSSRSGYGEYVQQTLQPGMRVRMLDDYEEISAGDEGEFRQSNNGIPPVQVFWQSTGRTYWVHWHMLEILGPEEATEDKASAAVEKGAGATVLGTAFPSWDWNPMDGLYPLPYLQPEPQKNERVGYLTQAEWWELLFFIKKLDLCEQQPIFQNLWKNLDETLGEKALGEISVSVEMAESLLQVLSSRFEGSTLNDLLNSQIYTKYGLLSNEPSSSSTSRNHSCTPDPEEESKSEASFSEEETESLKAKAEAPKTEAEPTKTRTETPMAQSDSQLFNQLLVTEGMTLPTEMKEAASEMARALRGPGPRSSLDQHVAAVVATVQISSLDTNLQLSGLSALSQAVEEVTERDHPLVRPDRSLREKLVKMLVELLTNQVGEKMVVVQALRLLYLLMTKHEWRPLFAREGGIYAVLVCMQEYKTSVLVQQAGLAALKMLAVASSSEIPTFVTGRDSIHSLFDAQMTREIFASIDSATRPGSESLLLTVPAAVILMLNTEGCSSAARNGLLLLNLLLCNHHTLGDQIITQELRDTLFRHSGIAPRTEPMPTTRTILMMLLNRYSEPPGSPERAALETPIIQGQDGSPELLIRSLVGGPSAELLLDLERVLCREGSPGGAVRPLLKRLQQETQPFLLLLRTLDAPGPNKTLLLSVLRVITRLLDFPEAMVLPWHEVLEPCLNCLSGPSSDSEIVQELTCFLHRLASMHKDYAVVLCCLGAKEILSKVLDKHSAQLLLGCELRDLVTECEKYAQLYSNLTSSILAGCIQMVLGQIEDHRRTHQPINIPFFDVFLRHLCQGSSVEVKEDKCWEKVEVSSNPHRASKLTDHNPKTYWESNGSTGSHYITLHMHRGVLVRQLTLLVASEDSSYMPARVVVFGGDSTSCIGTELNTVNVMPSASRVILLENLNRFWPIIQIRIKRCQQGGIDTRVRGVEVLGPKPTFWPLFREQLCRRTCLFYTIRAQAWSRDIAEDHRRLLQLCPRLNRVLRHEQNFADRFLPDDEAAQALGKTCWEALVSPLVQNITSPDAEGVSALGWLLDQYLEQRETSRNPLSRAASFASRVRRLCHLLVHVEPPPGPSPEPSTRPFSKNSKGRDRSPAPSPVLPSSSLRNITQCWLSVVQEQVSRFLAAAWRAPDFVPRYCKLYEHLQRAGSELFGPRAAFMLALRSGFSGALLQQSFLTAAHMSEQFARYIDQQIQGGLIGGAPGVEMLGQLQRHLEPIMVLSGLELATTFEHFYQHYMADRLLSFGSSWLEGAVLEQIGLCFPNRLPQLMLQSLSTSEELQRQFHLFQLQRLDKLFLEQEDEEEKRLEEEEEEEEEEEAEKELFIEDPSPAISILVLSPRCWPVSPLCYLYHPRKCLPTEFCDALDRFSSFYSQSQNHPVLDMGPHRRLQWTWLGRAELQFGKQILHVSTVQMWLLLKFNQTEEVSVETLLKDSDLSPELLLQALVPLTSGNGPLTLHEGQDFPHGGVLRLHEPGPQRSGEALWLIPPQAYLNVEKDEGRTLEQKRNLLSCLLVRILKAHGEKGLHIDQLVCLVLEAWQKGPNPPGTLGHTVAGGVACTSTDVLSCILHLLGQGYVKRRDDRPQILMYAAPEPMGPCRGQADVPFCGSQSETSKPSPEAVATLASLQLPAGRTMSPQEVEGLMKQTVRQVQETLNLEPDVAQHLLAHSHWGAEQLLQSYSEDPEPLLLAAGLCVHQAQAVPVRPDHCPVCVSPLGCDDDLPSLCCMHYCCKSCWNEYLTTRIEQNLVLNCTCPIADCPAQPTGAFIRAIVSSPEVISKYEKALLRGYVESCSNLTWCTNPQGCDRILCRQGLGCGTTCSKCGWASCFNCSFPEAHYPASCGHMSQWVDDGGYYDGMSVEAQSKHLAKLISKRCPSCQAPIEKNEGCLHMTCAKCNHGFCWRCLKSWKPNHKDYYNCSAMVSKAARQEKRFQDYNERCTFHHQAREFAVNLRNRVSAIHEVPPPRSFTFLNDACQGLEQARKVLAYACVYSFYSQDAEYMDVVEQQTENLELHTNALQILLEETLLRCRDLASSLRLLRADCLSTGMELLRRIQERLLAILQHSAQDFRVGLQSPSVEAWEAKGPNMPGSQPQASSGPEAEEEEEDDEDDVPEWQQDEFDEELDNDSFSYDESENLDQETFFFGDEEEDEDEAYD", "sequence_length": 2517, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d6925cf18d76f136a51c1ed01ee3dbdc898527b2bc628198e63f23978b9217fc", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IWT3.json", "taxon_id": "9606", "uniprot_accession": "Q8IWT3", "uniprot_release": "2026_03" } ], "pfam_id": "PF23168", "short_name": "CUL7_CUL9_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23186", "short_name": "DUF7059", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23199", "short_name": "DUF7060", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23200", "short_name": "DUF7061", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23201", "short_name": "DUF7062", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23205", "short_name": "DUF7063", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23212", "short_name": "DUF7064", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23217", "short_name": "DUF7066", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Solanum tuberosum", "origins": [ { "cited_uniprot_accession": "", "commit": 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"MPSATAQDARAPIAIIGMSCRFPGDAEDPLKFWDLLKEGREAYSEKTHRYNEEAFYHPGGQFNNKRQNVLPVKGGYMLKQDPYVFDAAFFNITAAEAISFDPKQRIAMEVTYEAFENAGMTLQKAAGTRTACYIGTSMSDYRDSIVRDFGNYPKYHLLGTSDEMISNRISHFFDLRGPSATIETACSSSHVATHIACQSIQSGESDMAVVGGIGMLLVPESTMQLNNLGFLSAFGQSRAFDASGAGYGRGEGCGIFILKRLDKAMEDGDTIRAIIRGSGVNSDGWTQGVTMPSGDAQASLIEYVYKSNGLDYEGTQYVEAHGTGTKVGDPTEAEALHRTIGQPTPKRKKLWMGSVKTNIGHLEAAAGAASMVKGVLAMEHGFIPPTLHFKNPNPAIKFDEWQLGVPTKLMPWPACQTRRMSTSAFGMGGTNAHLVLERPNEPAIPILERGAIGVSRKNQKRLFVFSSHDQAGFKRICDRLVEHVDTLGPKSSNPDYLANLAHTLAVGRSGLTWKSSCFAENIVELREHLTSSSLPEGAVRAAGGQTRIGFVFTGQGAQWARMGVELMDRKVFGKSVAKSTALLQEMGCEWDPVVELSKSQKESQLVKPEISQPICTILQIALIDELRSWGIRPAKVVGHSSGEIAAAYCMGALTHRDALAAAYFRGKASANVKRRGGMMAVGTTPEDAKKLITETKAQATVACVNSPRSITLSGDVDALEALRETFEKQGVFARRLKVDVAYHSSHMRSCSAEYQSSIMDLEPSELDGANESKEPILMVSSVTGGLVDAEALGPYYWIRNLISPVLFSDALKELVCPADSGGSSDVDMLIEIGPHSALRAPIEQILSHHDIKNVEYASMLTRGESGSETILGFAAELFRRGVPFDIAKANDDAQCRLLTDLPPYPFNHSQQFRAESRLQRETLTQQNPTKSLIGAERPSLDEHERVWRGFINLDDEPWLRDHTVGSTVLFPGAAVITIVLEAAQQMAEAGKTIRSLTLRDISFMAMMTLLEGTPTEVITHVRPHLVATTGTTPATWWEFTVSSCTGVTSNVRNNCRGLFSINYEDSRSSHMEMELERFEGDRVATYHQIKKECVEVISKQAFYDTLARSALAYGPHFQGVDNCRPGNGQTAFEVIVSDLGETFNKDKLTRPFLIHGGTLDSIFQAWVGSTKDSNGPGSFGFEKPLLPKSIGELEISLDFPGEVGYSLNGLSTSKKHGFSEWSTDITMFDRNVSKLLLSVKDFHLAELEVEDADRPDRTEHVDVDPAEISSEPKWNYALDFMSTQEIKQVVETASSSDDKLMQFISLAIHQRPNLEILELVESANQLRQTAVSKLPRGRLLPNQASCAILGGDYDNNNESAAAFGRIFGLDSSEAVPSDVAPADLVIANFNISNLEDIAERLVVLAKPEARILLIADKKVDSSVTSLADKGFDLVFSTEADSESLSLYCFGKKEEPQPERLTNGSTGQEVVILEPSSLSAESDRFSKDLQHALDNIGYNVSTVTDIHGAHAAKARIYVSLLEIEQPVLENLSQSEFEGLRDLLLNCDRLLWITRGDGPSLQLVDGFSRTIRSEFAGVEFQVLHLSGKNSRQGPSLAAQIVFKQSTESEFREDDGHLQISRWYRSVEEDDHIRNHLLDSIRTVSLPVGGNIEDNSSYRLAVGKPGLLNTLHFVSDDNTEAPLADNEVEMQVKASGINFRDIMGSMGLLPVSGIGQEASGIVVRVGKLGASSLKPGDRISTLTVGGTHATRIRCDYRVAKKIPEGMSFEEAAGIPVVHCTAYYALVKLAKLRPGQSVLIHAAAGGTGQAALQLAKHLGLTIFATVGTDTKRALIREKYGVPDENIFHSRDGSFVKGIERATNGRGVDCVLNSLSGELLRLSWGCLATFGTFVEIGLRDITDNMRLDMRPFAKSTTFSFINMVTLLQENPDAMGEILESVFEMIHQNVLQPVFPVTVYPVGKVEEAFRLMQQGKHVGKMILSFAAGDARAPVLCRAKDSFKLDPNATYLFIGGLGGLGRSMAVGFVACGARNIAFLSRSGDSKPEAKAVVDELRELGTRVQVYLGDVSDEASFRGAMEQCSRELPPVKGVIQMAMVLRDVVFEKMKYDDWTTGLRPKVQGTWNLHTFFDKDRPLDFMIFFSSIAGVFGNPSQAQYAAGNTYQDSLAKYRRDRGLKAVSVNLGIMRDVGVIAEGDSHFMQQWEEVLGIREPAFHALIKSIINGQLETSNIREAAKCPVQVTVGLGTGDILARNKIREPDYFRDPRFGALAVCSSTSTAAASSGENGVSIASQLAGLSNEADPEEAAGPIITKALVSKLAKILQVPPSEIDSSRPMYRYGVDSLVAIEVRNWITKEMSANMSLMDILGAMPMEQFAVQIAKKSKLVGGS", "sequence_length": 2383, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "555c14a4c01e87a15639377475c07321cd348a5a555988e22588936d4d37bf0e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B3FWU0.json", "taxon_id": "280754", "uniprot_accession": "B3FWU0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Trichoderma reesei (strain QM6a)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acp-sdga-c-pf23297.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acp-sdga-c-pf23297.yaml" } ], "pfam_ids": [ "PF00109", "PF00501", "PF00550", "PF00668", "PF00698", "PF02801", "PF07993", "PF08242", "PF08659", "PF14765", "PF16197", "PF21089", "PF23297" ], "protein_name": "Hybrid PKS-NRPS synthetase iliA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDQQRQQDGRFREPIAVIGSACRFPGACSSPSKLWDLLQQPRDVLKEFHPERLNLSRFHHKSGDTHGATDVGNKSYLLEEDTRLFDAAFFGISPIEAAGMDPQQRILLEAVYETFESAGVTLDELRGSFTSVHVGCMTSDWANIQARDTETVPKYNATGSANSILSNRISYIFDLKGPSETIDTACSSSLVALHNAARGLLNGDCNAAVVAGVNLILDPAPFINESKLHMLSPDARSRMWDKDANGYARGEGAGALLLKTLSQALKDGDHIEGLVRATGVNSDGQSPGITMPYSPTQTALIQQTYARAGLDPIKDRPQYIECHGTGTPAGDPVEARALSNAFIGHVDKSTENPILVGSIKTVIGHLEGGAGIAGVIKVLLSIKYRVIPPNLLFKDLNPDIAPYYGPLQIPTTAVPWPELPPGTPARASVNSFGFGGTNAHAVIESFDESFGPRASSADEGVVGPLLFSAKSGASLLRSVRDNLEYLQKDASLDLRDLSAFLQSRRTTHRVRAHFTGSSRDAVLENMTNFITTHAQSASDQIGHQPQLINPKEVPGVLGVFTGQGAQWPAMGRELYCKSALFRKTIEECEAVLDALPQQDRPDWSLTEELMKDAISSRISEAALSQPLCSAVQLALVKLLQAAGIAFDAVVGHSSGEIAATFAAGIITLQGAMQIAYYRGLHAKSAGGANHAKGAMMAVGLSFAEAKQFCSRPEFDGKIKVAASNAPKSVTISGDVDAIVQAHEILQADNIFARRLQVDTAYHSHHMLPCCQPYLNSLLACNIKVMQPTGKCTWISSVRGDTQLLRGDLSSLKGQYWVDNMVRTVLFTQAIESSIWHGGPFDLAIEVGPHPALKGPTEQTLKASYGILPVYTGVLKRGENNVEAFSAAVGTTWAQLGPAFVDFAGYRNLFYEAETPVFKIPKGLPLYSWDHDKVFWREGRLSRRFRLGNDQGHELLGRRTLDDNDTELRWRNVLKLGEMPWLRGHEVLGEVLLPGASYVSVAVQAGHNIAMTMGKNVRLIEISNVDILRPVVVPEGTDGVETLFTTRIVETTRDHIKAEFMYYVCPDESLGTMLRTCNGEVMVYLETQTDIASPDTLPAKDAMPLNLTKIDTERVYSLFKDIGLNYSGLFRGISTIERKLDYASTRSTWVDGLDSAYVVHPAMLDVAFQTMFIAKAHPASRQINSALLPSHIDRVRINPSVQFTQPNEVAETAAEFETWAVKQTANSLVGDLNIYDAATGKTFLQVEGLAVNSVGEQDASSDNSMFSRTLWGQDVTLGLPDPVRDPVKDAEGLQMAHAVERVAVFYVKNILKEVKKEERADFQWYHQRMFEAFENHISIVKNGEHPIILPEWLDDEESILDELDSKHGDTIDFKLLHAVGKDLAHVVRGNKQMLEVMTKNDMLNRFYMEGYASVPTNKAVGDVMRQLSFKFPRAKILEIGAGTGGTSWSVLKSINDAYESYTYTDVSSGFFHLAEEKFSDFAHKIIFKVLDIEQEPKEQGFKEQSYDIIIAALVLHATHDLERTMRHARSLLKPGGFLVMVELTGTMSVRATLVMGGLPGWWLGENDGRRLSPLVTAIEWDRLLQNTGFSGADAVIHDLADEEKHCTALIMGQAVDDDFQRLRSPLSTVAELPPPDDPILVIGGKRLSTSKVIREIQKLFPRKWARHVRVYKSIDEVNVSGITPGLDVLSLQDLDESPFSHTITAHELFIMAGRSGSSWVAAVTNANTSIARVHGTHVIPIDEQDCSPERLSAIANYILSWSISTVAGPHASVLLFEAHDSLAASVKAQLAAAGGKAFFASTRTHGTPANGIKIHALASKRSIQRVVPHDVQLFIDCSLDSSPAAATLTQSMPSNCISRQLDVQLVQEALRSAHRESVELLKEAFAFPGVESPAVPVVPAQTLAGRSFMSLKAQAYVTDWTTQVISTTVPPLSLEGLFRPDKTYFMAGMAGGLGLSICQWMIRNGAKHMVITSRNPQVNTATLEEAERVGATVKVLAMDLTNRESVEKVVQQIRETMPPIAGVCNAAMVLKDGFFVDMDVDQFNNTLAAKVIGSENLDSVFSSTPLDFFILLGSVASVIGNVGQSNYHAANLFMDSLVHQRRARGLAASIVHIAYVTDVGYVTREERDRQLDSHFRKVRLMPTSETDVHHAFAEAVKGGKPGSTSGYHDIIMGIEPLREQIPLDQQPLWMKNPRFAHFDQHAIHAQHERGSTGSIDNVRALVEKAEKEEEAIDAVMAAFCAKLESILQLTAGCINVQRPITDLGIDSLVAVEIRTWFLKELGADVPVVKILGGDTVQQLSTIATKKLLAKNMEAGAEKKSTIEKPAEATAPVPTSKQEESISSNSSYTKDDTPELEDEYESSVGVAAEEADEMRVRPGIIREERMSPAQARLWFMSQHLENSAAYNMAFRYKVKGPIGTARLKHALSFTTHKHECLRMCFYSHLEDGHPMQGLMASSLCNFKHTVHASEDDVAREMSRLSTCQWNLQYGHTMEVSLLSRDSEDHDLIIAYHHIVMDVIGLGVVLDDLNNAYNMKPVNKSAGSYIEFSVKQLEQQARGDFDKQLSFWEAEFRTIPQRLPRLPFARIGSPSGVAESVPDTYHQYRELNDTQFASLKATCQKLRISPFHFHLSLLQVLLSRYTNTDDLCIGIVDANRNDHRYAGTVGCFVNMVPVRLHVPPGKASFADVAQQTRRSALQALEHSAVPFDMILDKIKAPRSSRSTPLFQAALNYRTGSIWELPLGRAKMTMADVKDANNPYDLSLGIAETRTGCMVEVYVSSSAYGAEACATIMDAYMRLLDDFSNTPDLQINDCNIYGKPEIDSSLSIGQGPVIHFEWPATLSQRFLDMVRLHHGDPAVTDKTGTLTYSELLERVNGVSDTLIRHGCKSGTRIAVLCEPSIDTIVAMLAILHIGAVYVPLDVSLPTARHVAMIQSSKPSFVVNHASTDGQARECIGKIEFPIRRVVLDDVIEEEIRVTVPCLASPDACSIVLFTSGSTGTPKGIMLSQANFANHLALKTHLLGLGKETVLQQSSTGFDMSIVQMFCALANGGRLVIAPFDIRRDPIEMVSLVCSEHISLSIATPSEYLAWTRYGISSLKENTAWRHICMGGESVTRQLVLELRRLGLPNLRVTNCYGPTEITAAASFQPIDLGGQEDAHPDMVKYKVGKVLPNYTVSILDARGSPQPVNHTGEVCIGGAGVALGYISASDDAASKFIVTAQGQRMYRTGDRGRLLSDGTLLLFGRIEGDSQIKLRGIRVDLQEVELAVLEAADGLLSNVVVSQRGDVLIAHATVPPGEPEATLITEDDLNRVLRRLDLPQYFIPARIVILSSLPTNANGKLDRKAIAALPLPSCQSRADSGSEEEKMTIEEGELRLLWERVLPQVAPLTRIAPSSDFFLLGGNSLLLMKLQAAMKDSMNVMMSTRKLYQASTLREMARAVDKQRRSQAEHDDQREIDWAAETAIPKWLLNQIHEQSQSKQVVGAKSPVEKISVLMTGATTFLGGHLLKSLLESDKVSKIYCIAVLADDQHLLPENEKIESFNGSLLSPTLGLDATERVRLESTADIIVHAGGSGHCLNTYATLRIPNVISTHFLASMALPRSIPLLFLSSSRVVLLTGNTSPPAASVSGFPPATDGREGHMMSKWTSEVFLENLVGHLLASSPRHQQNPWTVSVHRPSVIVSEHAPNSDALNAILRYSILMQSSPRMDNVVGYLDLAQLDTVIAELRQSVIQLGSGQGKQESTNILFKHHSGGIKVPASELWSHLGKVYGITFDEVELDEWLRRAARAGIDPLITAYLEAIQANGAKMIFPYMGSD", "sequence_length": 3812, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "87ef695c2eebdb47d818b7cdf0a9ba87fa359ba92c21c56a2a0cb50a2f6908cd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G0REX6.json", "taxon_id": "431241", "uniprot_accession": "G0REX6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)", "origins": [ { "cited_uniprot_accession": "Q4WAZ9", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/unclassified/azaspirene.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "naturalproductmech:mibig-a469ae857b", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/unclassified/azaspirene.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acp-sdga-c-pf23297.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acp-sdga-c-pf23297.yaml" } ], "pfam_ids": [ "PF00109", "PF00501", "PF00550", "PF00668", "PF00698", "PF02801", "PF07993", "PF08659", "PF14765", "PF21089", "PF22336", "PF23297" ], "protein_name": "PKS-NRPS hybrid synthetase psoA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVYTHSPKEPIAIIGTGCRFPGGSTSPSKLWDLLYSPRDLTREVPAESRFNPKGFYNVDGEHHGASNATNAYFIEEDPRYFDAGFFSIAPREAESIDPQQRLLLETVYEAMENAGLTLNGMRGSATSAYMGAMSADYTDTQLRDIENVSKYMITGTSRALLANRLSYFFDWKGPSISVDTACSSSLAAVHLGVQALRAGECTISCVGGSNIILNPDCYLAATSLHLLSPTGRSQMWDQAADGYARGEGVCVFFMKTLSQALRDGDRIDALLRETCVNSDGRTQGIALPSAEAQVSLMRTAYKNAGLDLSKAEDRPQYIEAHGTGTQAGDPREAYAIATTFFPPGEDHSHRPKLVVGSVKTIIGHTEGCAGIAGILKAVLAMRHKTIPPNQHFHNLNPSVKPSFKHLSIATSPQPWPVVPPDTPLRASVNGFGSGGTNCHAIVESYVPEIHDNGPWGKPKEMTQVPNGVAAPETDFSPIPLIFSASSGTALRAMLERYQEYLERTEVSLLRLAMTLNSHRSTLPVRVSIPGTSKADVLAAIRTQLAKVGSNPGAEIGTRSSVPEFDHVRRPKILGVFTGQGAQWAGMGQGLMAKSALFRQVIEVMEEAMAQLPDGPEWSLKEEIMKPPKTSRLGEAEISLPVCAALQVGLVKVLRSAGITFSMVVGHSGGEIGSAYAAGKISEVDAIKIAYYRGVYTKLAIGKDGKKGGMIAVGFGYEDGLNFCAMEQFADRLTVAASNSPKSVTLSGDLDAVHEAKELLDAEGVFNRVLRLDTAYHSPHMYPCAAPYLAAIERCGLVAGKSNGTAWASSVYDDNRMMTSAQDKDLEAAYWKDNLIGRVLFSQAVERALDEGNGDFDLALEIGPHPSLKGPTLETIRHKIGSEIPYSGVLDRKADDILALSTALGFSWLTLGSGVVDFAGYVSGFDPSNASILNAPALPDLPTYPWDHKKVLYRESRLNKNVRHRVDPPHPLLGSRTPDDTDYEPRWRNFLIMEELPWLRDHCVQGQIIVPAATYSVMALEAAKVLCRGKHVQSIELSDVAILRPIVLDEASDGTETLFSVRSDLDSNKKHEDEIHAQFTLSAGAMDDRHLRTAATGHIRITLAAEAPSSFPNGPRPTELDLLPTSVDRFYASMDEIGLSYSGPFRAMTSMKRRLNVASATVAVDRDLAGTIPVHPTWLDACFQTFLAAFAAPRDGSLWTAFMPTAIGRMVFSPSSTSQVPGRSVTVDAHITDFAPGYQVSLPTLTGDMSIFNSETNQLQIQIEDFVMSSFLPASEKDDRRFYLQNVWGQEMLSGALCAAAERCVAPTESESKIIDTCEKAVHYYLSKLKAAGLLDQWADKNPGLRSLMNEIEARVTSIPEQSDLVSMLGEVGEHIDLVLVRTIGESLLNSPSEGLGPITPSPMGALISRWHHEGLGFAQLQRHFVSAAKQISHQHANLRILQVGPSSPGLVRSVCQELGRSLERYTLVDDSEQTIEEMKSALAADQLRVDFTTASVENGIDAVNHLTSAGGFDLVIVHKAFTKQVTALKTVRNLLRPGGFMLMMAATGAQLRFPFMLMSTLPSLDDERLAQTKFINATRAETHDLLRQIGFSGVDSIALDNVPDKHTFSVVVSQALDDHIAFLRSPLTSPSPVPLSGNLLVVGGFSADIAKLATAIQSLVSTVWHGDIINVRTLAELDDEASTVEAVLSLTDLDRPVLEDVRAPTFRGLQRLFSEAKTVLWITHRAKADNPYHNATIGLGRSFQSENPQKVLQFLDVDTLDGVESAIAETFLKLIGGVNMRNSNPADPTRLWTIEPEVSLENGKYLVPRLFPDTERNDRLNALRRKVQTQVSVETQPISLSRSAQSDQVAYTAEAVHFHRDLADGATDPVTIQVELCSTEPVIPNIDNEDLFCFVGRTSEGARLVGLSTSNSSVVKVPREWTIPVDKHTSHDQGAFVLELRNEIQSLVIAKSIPPGSTTLIYEPDPHLAASLQRPGRPATSSVSFRARSTWSIPGSHILIDPHASRKDIQAKVPPKTRMLIHMEQGPETCEFLALRQALPPYATVVAFNDLAADDVNPRELLAEALSIIRGDSQSTKVPFDPSSVVKASALVAGGTREHANAAVVDWTGAQSITLSPRPVDTRNLFSPNKTYLLVGLTGHIGQSICRWMVQGGARHIVVTSRHPEKQGQLWREELLRQGVNIVIEAADVTKEHDLLDLRARIVSSMPPVGGIANGAMVLDDKLFIDMPFESFQAAMKPKVQGSIYLEEVFSADNLDFFLFFSSISVMTGQRTQANYVAANNFMVAMAERRRARGLPASVIDIGMVVGIGVIQRSQNDKGVSAMENSIRQMDYMPVSETDLHHLLAEAILVGQRDESPELITGLETYKPVEGEAPFWHHNVRFSHLITDPDAAQAGADSAGSAQKSLKEMLLSSGGPEEARKVMENALLQYLASSLKLSRETIYTDVPIIDLGIDSLVAVQIRNWTWAEAGYDLPVLKILGGSSVTQICDEVVASLSFDKSSIAAAKVDSQAAPAHKLRPWDKPSADTKRTDSIAPVPRSQIAANGPNGLPNGALKKASKLAVKVRPLWTTQAGGKDTKKGPRPAPIRIQPLSLGQSRLYFLSQYMDDDRVLNCTISYALSGKLDVSKLEQSLIQVVQRHEALRTSFYTDEKDGKPMQGLLEKSPFRLRVVPGVSASSDVETEFNLIRYRPYDLEQADTFAATLLSHSPDSHTLICGYHHIIMDGVSWQIFQKDLAMFYNNSGIADSAKHLPAQYSEFTRKQQEDLSCGAYAERLRFFQDQFREPVESLPLFPFAKVGTRKVVKQYAVQEATTHLNAKVVSAIKQASQTSRTTPFHFYLSAFQVLLHRLLETDKMCIGVVDANRSDQNFVNTIGFFLETIPLWFKVNSEQRFVELLKETRTKAYAALAQTGVPTEEILRACGVASSTTETPLFQVCFNYRMGAGRTAALQGVEMKFLDYVDAQNPFDLVATVDDLDDGTAMITLYLQDYLYDQEGAQLLATMYANVLQVLAENPERLVGSVSISNATLEDEGVKLGTGPILDLVAPSTPTLSKIFHTWVDKDPHALAVKDTTGKSKTYVQLAERANAIAASLLNAGAAPSIPIGVLLDPGVDTIATILAILRIGAAYVPLDTRSSDAVLSDILQESQPGIVIHHSATAPRSQILLKASAKTKLVTLNAVPQKTIRKIQDVSVPEGLAMILYTSGSTGSPKGIPLTNANIRTPILGVSERVPLGREVVLQQSGQGFDAAVYQIFIALANGGTLIMVDNRDDPAKVAALMAQESVTCTTHIVSEMQALLKYGYDELRNCSSWRIAMVAGEAFTVHLLDQFRALNRPDLKVINAYGPTEASICSSLGEVSFNRISSSETSIPIGKAIPNYGTYIVDQHCKPVPLGWPGEVAIAGPGVASGYLNLGELTQAKFRSAATLGEVFGSDCLYLTGDRGRMLSDGSIVLSGRVDGDDQVKIRGHRVQLGDVARALVQASRGVFADAAVILKGDDTSNPQLVAYVVFSRTSNIQDQQTYLRQLNQDLPVPAYMRPAITIPLDTLPVTDRGKLDSKKLASLPLPSISVDYEEDEQLTPTEARLRDVWKNVLGDIASSIPIRRSSDFFSVGGNSLILLALKAEIAQVFGVGLSVSELFQASTLELLAARLDGTSLLAQINWEEETAPDETQFTLPPPINGINGHGSSNGHAQGISVLLTGATGFLGGHILRQLVQLPSVEHVHCVAIRPNKVDVRRQLSVESPKIIRYSGDLALPNMGMSESEFSDLFKSIDVIVHNGAEVSHMKNYRSLRAANFLSTVGLARAAVSRGIPIHYISTGGVARLSVADEQPEASLAAFHPPIDGSDGYVASKWASEVFLEKVQRRFQGQVWIHRPSSITGDDVPDNDIAHSLLKFSRELGAVPELTGSGFFDFINVETVSNNIAASVVRSSEKSGGGLIYLHQSGEQVIPVGDLQKYVEELEGRPLQVLPLKEWVDLSIRKGLDEVLGSYMLASKGVIRAPLLQRGPHVE", "sequence_length": 4007, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "003f280ec0c4089b18296dddb698e0da4e8a0f546678f6f335915fc804691e35", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q4WAZ9.json", "taxon_id": "330879", "uniprot_accession": "Q4WAZ9", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyostelium discoideum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acp-sdga-c-pf23297.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23297", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acp-sdga-c-pf23297.yaml" } ], "pfam_ids": [ "PF00109", "PF00195", "PF00698", "PF02797", "PF02801", "PF08240", "PF08242", "PF08659", "PF13602", "PF14765", "PF16197", "PF21089", "PF23297" ], "protein_name": "Probable polyketide synthase 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNKNSKIQSPNSSDVAVIGVGFRFPGNSNDPESLWNNLLDGFDAITQVPKERWATSFREMGLIKNKFGGFLKDSEWKNFDPLFFGIGPKEAPFIDPQQRLLLSIVWESLEDAYIRPDELRGSNTGVFIGVSNNDYTKLGFQDNYSISPYTMTGSNSSLNSNRISYCFDFRGPSITVDTACSSSLVSVNLGVQSIQMGECKIAICGGVNALFDPSTSVAFSKLGVLSENGRCNSFSDQASGYVRSEGAGVVVLKSLEQAKLDGDRIYGVIKGVSSNEDGASNGDKNSLTTPSCEAQSINISKAMEKASLSPSDIYYIEAHGTGTPVGDPIEVKALSKIFSNSNNNQLNNFSTDGNDNDDDDDDNTSPEPLLIGSFKSNIGHLESAAGIASLIKCCLMLKNRMLVPSINCSNLNPSIPFDQYNISVIREIRQFPTDKLVNIGINSFGFGGSNCHLIIQEYNNNFKNNSTICNNNNNNNNNIDYLIPISSKTKKSLDKYLILIKTNSNYHKDISFDDFVKFQIKSKQYNLSNRMTTIANDWNSFIKGSNEFHNLIESKDGEGGSSSSNRGIDSANQINTTTTSTINDIEPLLVFVFCGQGPQWNGMIKTLYNSENVFKNTVDHVDSILYKYFGYSILNVLSKIDDNDDSINHPIVAQPSLFLLQIGLVELFKYWGIYPSISVGHSFGEVSSYYLSGIISLETACKIVYVRSSNQNKTMGSGKMLVVSMGFKQWNDQFSAEWSDIEIACYNAPDSIVVTGNEERLKELSIKLSDESNQIFNTFLRSPCSFHSSHQEVIKGSMFEELSNLQSTGETEIPLFSTVTGRQVLSGHVTAQHIYDNVREPVLFQKTIESITSYIKSHYPSNQKVIYVEIAPHPTLFSLIKKSIPSSNKNSSSVLCPLNRKENSNNSYKKFVSQLYFNGVNVDFNFQLNSICDNVNNDHHLNNVKQNSFKETTNSLPRYQWEQDEYWSEPLISRKNRLEGPTTSLLGHRIIYSFPVFQSVLDLQSDNYKYLLDHLVNGKPVFPGAGYLDIIIEFFDYQKQQLNSSDSSNSYIINVDKIQFLNPIHLTENKLQTLQSSFEPIVTKKSAFSVNFFIKDTVEDQSKVKSMSDETWTNTCKATISLEQQQPSPSSTLTLSKKQDLQILRNRCDISKLDKFELYDKISKNLGLQYNSLFQVVDTIETGKDCSFATLSLPEDTLFTTILNPCLLDNCFHGLLTLINEKGSFVVESISSVSIYLENIGSFNQTSVGNVQFYLYTTISKATSFSSEGTCKLFTKDGSLILSIGKFIIKSTNPKSTKTNETIESPLDETFSIEWQSKDSPIPTPQQIQQQSPLNSNPSFIRSTILKDIQFEQYCSSIIHKELINHEKYKNQQSFDINSLENHLNDDQLMESLSISKEYLRFFTRIISIIKQYPKILNEKELKELKEIIELKYPSEVQLLEFEVIEKVSMIIPKLLFENDKQSSMTLFQDNLLTRFYSNSNSTRFYLERVSEMVLESIRPIVREKRVFRILEIGAGTGSLSNVVLTKLNTYLSTLNSNGGSGYNIIIEYTFTDISANFIIGEIQETMCNLYPNVTFKFSVLDLEKEIINSSDFLMGDYDIVLMAYVIHAVSNIKFSIEQLYKLLSPRGWLLCIEPKSNVVFSDLVFGCFNQWWNYYDDIRTTHCSLSESQWNQLLLNQSLNNESSSSSNCYGGFSNVSFIGGEKDVDSHSFILHCQKESISQMKLATTINNGLSSGSIVIVLNSQQLTNMKSYPKVIEYIQEATSLCKTIEIIDSKDVLNSTNSVLEKIQKSLLVFCLLGYDLLENNYQEQSFEYVKLLNLISTTASSSNDKKPPKVLLITKQSERISRSFYSRSLIGISRTSMNEYPNLSITSIDLDTNDYSLQSLLKPIFSNSKFSDNEFIFKKGLMFVSRIFKNKQLLESSNAFETDSSNLYCKASSDLSYKYAIKQSMLTENQIEIKVECVGINFKDNLFYKGLLPQEIFRMGDIYNPPYGLECSGVITRIGSNVTEYSVGQNVFGFARHSLGSHVVTNKDLVILKPDTISFSEAASIPVVYCTAWYSLFNIGQLSNEESILIHSATGGVGLASLNLLKMKNQQQQPLTNVYATVGSNEKKKFLIDNFNNLFKEDGENIFSTRDKEYSNQLESKIDVILNTLSGEFVESNFKSLRSFGRLIDLSATHVYANQQIGLGNFKFDHLYSAVDLERLIDEKPKLLQSILQRITNSIVNGSLEKIPITIFPSTETKDAIELLSKRSHIGKVVVDCTDISKCNPVGDVITNFSMRLPKPNYQLNLNSTLLITGQSGLSIPLLNWLLSKSGGNVKNVVIISKSTMKWKLQTMISHFVSGFGIHFNYVQVDISNYDALSEAIKQLPSDLPPITSVFHLAAIYNDVPMDQVTMSTVESVHNPKVLGAVNLHRISVSFGWKLNHFVLFSSITAITGYPDQSIYNSANSILDALSNFRRFMGLPSFSINLGPMKDEGKVSTNKSIKKLFKSRGLPSLSLNKLFGLLEVVINNPSNHVIPSQLICSPIDFKTYIESFSTMRPKLLHLQPTISKQQSSIINDSTKASSNISLQDKITSKVSDLLSIPISKINFDHPLKHYGLDSLLTVQFKSWIDKEFEKNLFTHIQLATISINSFLEKVNGLSTNNNNNNNSNVKSSPSIVKEEIVTLDKDQQPLLLKEHQHIIISPDIRINKPKRESLIRTPILNKFNQITESIITPSTPSLSQSDVLKTPPIKSLNNTKNSSLINTPPIQSVQQHQKQQQKVQVIQQQQQPLSRLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDKAETNEKVKRIFEQSQIKTRHLVRDYTKPENSIKFRHLETITDVNNQFKKVVPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHFSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSINRSFPNTENAMVWDLEKEGWNLGLDASIPIVIGSGIEAFVDTLLDKAKLQTSTAISAKDCEFLIHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDHARKSKSLPTYSISLAFGPGLAFEGCFLKNVV", "sequence_length": 3147, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ece5fa3e7393e79ba84176e7a33af75eef192d7397eb4126f167f3d28ac2a395", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q55E72.json", "taxon_id": "44689", "uniprot_accession": "Q55E72", "uniprot_release": "2026_03" } ], "pfam_id": "PF23297", "short_name": "ACP_SdgA_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23299", "short_name": "DUF7081", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23305", "short_name": "DUF7082", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/asp-protease-2-pf13650.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13650", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/asp-protease-2-pf13650.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7083-pf23309.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23309", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7083-pf23309.yaml" } ], "pfam_ids": [ "PF00078", "PF00665", "PF13650", "PF17921", "PF23309" ], "protein_name": "Uncharacterized protein K02A2.6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNDLKRSIQKFQFNVAEPEAFKRWLARNKLTFVEDGKNLSERERTRLLLGCLEESTFHRYEDSQREISDIYSISFDDTVTALTKIFGSTKSLMMRRQQCLQICRANGLSQDYLDYTNSISDAVLDSKLSSMTSDEWSIFLFLRGLNSPGDEKAKLYLMQYVEASEKKNEKLKLSDVHDEWMKFIQMHQQSKIVSVKPSKSSQQVDVNKVDTNRSKKKKKPIPRKPEKSSQDSKKKGEIPTCFYCNKKGHYATNCRSNPKTGNQGGNKGKSKGCDSVHVDGLDVKTEHQAKHRMSVEVCGKDVAFQLDTGSMITLISVKCWEKLGSPPLEKVPHRISCANGTPMAVKGRCLVKFKLKGIEYTEYVYVRDRQTNLLGTSWLNLCPQMRSALAQIVNQVSTSETEASRLEVMLKNDFPEVFKDGLGLCTKEKAEFRTEENAVPVFKRARPVPYGSLEAVETELNRLQEMGVIVPITYAKWAAPIVVIKKKGTGKIRVCADFKCSGLNAALKDEFHPLPTSEDIFSRLKGTVYSQIDLKDAYLQVELDEEAQKLAVINTHRGIFKYLRMTFGLKPAPASFQKIMDKMVSGLTGVAVYWDDIIISASSIEEHEKILRELFERFKEYGFRVSAEKCAFAQKQVTFLGFVDEHGRRPDSKKTEAIRSMKAPTDQKQLASFLGAADWLSRMMQDHQQNADDVVIAEIYDDDDDEDDSIIQKLNPVTETDIRFESQKDHEVSSVVKLVRNDSWKPKPSTEIEKHWIRYRDRLKLIHGCLLLDDRVIVPKSLQKIVLKQLHEGHPGIVQMKQKARSFVFWRGLDSDIENMVRHCNNCQENSKMPRVVPLNPWPVPEAPWKRIHIDFAGPLNGCYLLVVVDAKTKYAEVKLTRSISAVTTIDLLEEIFSIHGYPETIISDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAERFVDTLKRGIAKIKGEGSVNQQILNKFLISYRNTPHSALNGSTPAECHFGRKIRTTMSLLMPTDRVLKVPKLTQYQQNMKHHYELRNGARAKAFQVNQKVYVQVHHGNKSQWKHGVIRRKFGGVLYEVQVGDRMQKSHVNQIRTRYGDYSRSSVNPRLSSDPLGFVGESGGDEMSRNDDPVVTSNGSSTDVNRGSRITSELKKKESNAVRGQPCGSCSPTNNDVSAPGYASRSHPTTDPSHSVRRSSRIRRVLDRYGSSVEHPSTSTGTPRGSTSTQLGQASTRNGSRYTASGRNPSCQGNRYSSIRGEGVTARRERVRTTWR", "sequence_length": 1268, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "dc1ef680e6add8793a86133a7b7d1fb372bd7ce436639d083aa5b5e0a489da3b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q09575.json", "taxon_id": "6239", "uniprot_accession": "Q09575", "uniprot_release": "2026_03" } ], "pfam_id": "PF23309", "short_name": "DUF7083", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23311", "short_name": "DUF7084", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23318", "short_name": "DUF7085", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23324", "short_name": "DUF7086", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7087-ipr055514.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055514", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7087-ipr055514.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7087-pf23346.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23346", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7087-pf23346.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/duf236-repeat-ipr004296.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR004296", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/duf236-repeat-ipr004296.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf236-pf03057.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF03057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf236-pf03057.yaml" } ], "pfam_ids": [ "PF03057", "PF23346" ], "protein_name": "Uncharacterized protein C02F5.5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSYMEQIPPYEYYKYVFGTRCAVLACSSFELMMVLLGSLGDSNVLAKLFYLVFLGASAAVSGFNLQQNIDGRDEIKKITGSGDNETRGKAAALVGIPALAAVFVFLCVSGHAFFSLFVLVHVLASIGQLGIEAYEVRNGFCIKAPENKKAVADSYDQNYQILNMVQDSVFDKK", "sequence_length": 173, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d647902e6cc98ec50f1a44aec769a2de72b17a2c198e709fa750fcbc110c7638", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P34282.json", "taxon_id": "6239", "uniprot_accession": "P34282", "uniprot_release": "2026_03" } ], "pfam_id": "PF23346", "short_name": "DUF7087", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/abc-transp-aux-pf09822.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09822", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/abc-transp-aux-pf09822.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7088-pf23357.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23357", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7088-pf23357.yaml" } ], "pfam_ids": [ "PF09822", "PF23357" ], "protein_name": "Uncharacterized protein BB_0752", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKNKENEVLNLTLNLTIIFLIFCNISIXIFKIDFTKHKAFTISKVTKNLFSSANETIYITYYNSGSLENYFAFPNQIKNFLISFSDASKCKVIYKEIDADKISTPLEHIGIPSQQIDLRDINQLSILKIYSGIEIIYEGKREVIPVVTEISNLEYDLANGLDKLINNTKKVLGLAFGDSTLKEAHKNFSEIMKKAFGIEIKEIDLKTEKLEDIRKDINGLFIIGAKEIDEEIAKKIDDFIVNDGKIFVATSTIDYNPQNPYGITPIKSSLFDLFESYGIKYNDNIILDKRAPTIFLGGNFQTYYPWILIDKSNIVKKDMPLLKNFYTATIPWSSSLELIKKDETEVKFLPLFASSKQSWQVKEPNLSNISLNAFEVPNKFEENKTKILGYAIEGKIKSPYKDQYSKNSKIILTGSSMIFSDYMYNGSPSNFELSGRISDYLMQKEEFFNIKSREVRAKLKFASSSNEMVNAKFSLIIVNLIILPTIILIFGLVRFTRKRKAN", "sequence_length": 502, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b2cdd862fbcd98a53186606974288dad764518fdd168d76fefc21c6d98245054", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O51693.json", "taxon_id": "224326", "uniprot_accession": "O51693", "uniprot_release": "2026_03" } ], "pfam_id": "PF23357", "short_name": "DUF7088", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23363", "short_name": "DUF7089", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23365", "short_name": "DUF7090", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23367", "short_name": "DUF7091", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23368", "short_name": "DUF7092", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23373", "short_name": "DUF7093", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23375", "short_name": "DUF7094", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23378", "short_name": "DUF7095", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23379", "short_name": "DUF7096", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23382", "short_name": "DUF7097", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23384", "short_name": "DUF7098", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23388", "short_name": "DUF7099", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23391", "short_name": "DUF7100", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23392", "short_name": "DUF7101", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23394", "short_name": "DUF7102", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23396", "short_name": "DUF7103", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23397", "short_name": "DUF7104", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/faz1-cons-pf23398.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/faz1-cons-pf23398.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/faz1-c-pf23404.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23404", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/faz1-c-pf23404.yaml" } ], "pfam_ids": [ "PF23398", "PF23404" ], "protein_name": "Flagellar attachment zone protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALLNVISENPLTLQPGQVIAFDHLANGEHWQWALGTVVSSDKHVVVVEQWAVNEGSCETLKHNISSEIQKEMKRMGVFQEQLSSARDKLAAIRSENEDRVSAARAVFEDAKARVASVDEVHMREVTSQACPSPVAVEVLKCVLALAQNDPTVTNCSTWDDIRMEYRRPNAIADFISADITGKTYPNAEEICSSLNEQRLSSLAASRDSEAISSLHHWVLSALAYQEAYCRLTTDTRVQEQNDAIANCIAGMKGCRLKVMKLKEELERGGTPTFGGQLTSFTKTSVQLKAPLSSVISIVGVDPSAQDCVLTDDEVGLILDKAEQTRLQINDHFSHLSNSYMEAMAELHCLSMYTSELEERRLNLQERFVFSLFTNAGKTNAPRRERIETDVGLRSVEAPRGDSANNIKDLQEIIKELSSHDERWMYRNEPTVTTKHRKSYPGREWSKVVERKPEELLSTFRTEQAAACHVPEDAIRNIEFTATSEKLQVSFDVQHPVKQTAAEINKRLQEFPSRGMDRMLCDVDQPKKGLDRAIVEVCRAFDLREHAFRGMTFDKFIEEVAMKGRVGDKDAYESEIGDLLMLLDKIHNENRSLQYTLEKSAEEFRRQTASTMREQESLRQRNGELHAEIGRLRDLVEKLRDLADNQASELELLKLQKTQANQIRAQRNLSTFRGDDTAEPVYCVTLDELREQTEHCDQVERELERQREQCQNLLNAQDDLLAELSGVSEEKEKLEAECERLEAELRQMEEKSRLSEQGLSEMTQRLEEKQAEIEGLLENLEQLDEQLEALRAAEKSAQAHIEARDREISDLQQRLEGEIDDHIKTTALLEELRKHYNNLEELFDKQEAELMAYREKRQNAHKVRSLEPTLRPIGTQTKPFQEVVSADEISSEPLLSVTLDEYNDHMHRSNQFQQENDLLRQQLQQANDERENLHDRLEQLMAENQSLSEQLHNMHEELEREERDRSGVTLQNERLAEEIQRKTAENEQLVLENNKSRSDIRNLNVQVQRLMEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEALDLKAAENEKLAEELELKVAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEALDLKAAENEKLAEELDLKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKVAENEKLAEELELKVAENKRLAEEVTQRLSEKELLAEDTSARLLEADSANSALQCKVKHLEEKLTLLSSEKETALATLEAEIVDLLTQLKGLNGTNSALESLCASKEKELVFLREHCELWTDPTTKKEKVITRHVKVFDGNEWMKLITDRPEALMSAFVIDAGNACHVPGDQIHEVSFLNNKEKH", "sequence_length": 1748, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9dc2c75059d2d2383caef4d47eaee5b4daefd489f95b1aec2d820815f38971fd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C9ZN16.json", "taxon_id": "679716", "uniprot_accession": "C9ZN16", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Trypanosoma brucei brucei (strain 927/4 GUTat10.1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/faz1-cons-pf23398.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/faz1-cons-pf23398.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/faz1-c-pf23404.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23404", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/faz1-c-pf23404.yaml" } ], "pfam_ids": [ "PF23398", "PF23404" ], "protein_name": "Flagellar attachment zone protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALLNVISENPLTLQPGQVIAFDHLANGEHWQWALGTVVSSDKHVVVVEQWAVNEGSCETLKHNISSEIQKEMKRMGVFQEQLSSARDKLAAIRSENEDRVSAARAVFEDAKARVASVDEVHMREVTSQACPSPVAVEVLKSVLALAQNDPTVTNCSTWDDIRMEYRRPNAIADFISADITGKTYPNAEEICSSLNEQRLSSLAASRDSEAISSLHHWVLSALAYQEAYCRLTTDTRVQEQNDAIANCIAGMKGCRLKVMKLKEELERGGTPTFGGQLTSFTKTSVQLKAPLSSVISIVGVDPSAQDCVLTDDEVGLILDKAEQTRLQINDHFSHLSNSYMEAMAELHCLSMYTSELEERRLNLQERFVFSLFTNAGKTNAPRRERIETDVGLRSVEAPRGDSANNIKDLQEIIKELSSHDERWMYRNEPTVTTKHRKSYPGREWSKVVERKPEELLSTFRTEQAAACHVPEDAIRNIEFTATSEKLQVSFDVQHPVKQTAAEINKRLQEFPSRGMDRMLCDVDQPKKGLDRAIVEVCRAFDLREHAFRGMTFDKFIEEVAMKGRVGDKDAYESEIGDLLMLLDKIHNENRSLQYTLEKSAEEFRRQTASTMREQESLRQRNGELHAEIGRLRDLVEKLRDLADNQASELELLKLQKTQANQIRAQRNLSTFRGDDTAEPVYCVTLDELREQTEHCDQVERELERQREQCQNLLNAQDDLLAELSGVSEEKEKLEAECERLEAELRQMEEKSRLSEQGLSEMTQRLEEKQAEIEGLLENLEQLDEQLEALRAAEKSAQAHIEARDREISDLQQRLEGEIDDHIKTTALLEELRKHYNNLEELFDKQEAELMAYREKRQNAHKVRSLEPTLRPIGTQTKPFQEMVSADEISSEPLLSVTLDEYNDHMHRSNQFQQENDLLRQQLQQANDERENLHDRLEQLMAENQSLSEQLHNMHEELEREERDRSGVTLQNERLAEEIQRKTAENEQLVLENNKSRSDIRNLNVQVQRLMEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENKRLAEEVTQRLSEKELLAEDTSARLLEADSANSALQCKVKHLEEKLTLLSSEKETALATLEAEIVDLLTQLKGLNGTNSALESLCASKEKELVFLREHCELWTDPTTKKEKVITRHVKVFDGNEWMKLITDRPEALMSAFVIDAGNACHVPGDQIHEVSFLNNKEKH", "sequence_length": 1692, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "56058ca8db2090d2860e055455f910d367950fee9df791744acb7149eecb3475", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q585H6.json", "taxon_id": "185431", "uniprot_accession": "Q585H6", "uniprot_release": "2026_03" } ], "pfam_id": "PF23398", "short_name": "FAZ1_cons", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/faz1-cons-pf23398.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/faz1-cons-pf23398.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/faz1-c-pf23404.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23404", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/faz1-c-pf23404.yaml" } ], "pfam_ids": [ "PF23398", "PF23404" ], "protein_name": "Flagellar attachment zone protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALLNVISENPLTLQPGQVIAFDHLANGEHWQWALGTVVSSDKHVVVVEQWAVNEGSCETLKHNISSEIQKEMKRMGVFQEQLSSARDKLAAIRSENEDRVSAARAVFEDAKARVASVDEVHMREVTSQACPSPVAVEVLKCVLALAQNDPTVTNCSTWDDIRMEYRRPNAIADFISADITGKTYPNAEEICSSLNEQRLSSLAASRDSEAISSLHHWVLSALAYQEAYCRLTTDTRVQEQNDAIANCIAGMKGCRLKVMKLKEELERGGTPTFGGQLTSFTKTSVQLKAPLSSVISIVGVDPSAQDCVLTDDEVGLILDKAEQTRLQINDHFSHLSNSYMEAMAELHCLSMYTSELEERRLNLQERFVFSLFTNAGKTNAPRRERIETDVGLRSVEAPRGDSANNIKDLQEIIKELSSHDERWMYRNEPTVTTKHRKSYPGREWSKVVERKPEELLSTFRTEQAAACHVPEDAIRNIEFTATSEKLQVSFDVQHPVKQTAAEINKRLQEFPSRGMDRMLCDVDQPKKGLDRAIVEVCRAFDLREHAFRGMTFDKFIEEVAMKGRVGDKDAYESEIGDLLMLLDKIHNENRSLQYTLEKSAEEFRRQTASTMREQESLRQRNGELHAEIGRLRDLVEKLRDLADNQASELELLKLQKTQANQIRAQRNLSTFRGDDTAEPVYCVTLDELREQTEHCDQVERELERQREQCQNLLNAQDDLLAELSGVSEEKEKLEAECERLEAELRQMEEKSRLSEQGLSEMTQRLEEKQAEIEGLLENLEQLDEQLEALRAAEKSAQAHIEARDREISDLQQRLEGEIDDHIKTTALLEELRKHYNNLEELFDKQEAELMAYREKRQNAHKVRSLEPTLRPIGTQTKPFQEVVSADEISSEPLLSVTLDEYNDHMHRSNQFQQENDLLRQQLQQANDERENLHDRLEQLMAENQSLSEQLHNMHEELEREERDRSGVTLQNERLAEEIQRKTAENEQLVLENNKSRSDIRNLNVQVQRLMEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEALDLKAAENEKLAEELELKVAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEALDLKAAENEKLAEELDLKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKVAENEKLAEELELKVAENKRLAEEVTQRLSEKELLAEDTSARLLEADSANSALQCKVKHLEEKLTLLSSEKETALATLEAEIVDLLTQLKGLNGTNSALESLCASKEKELVFLREHCELWTDPTTKKEKVITRHVKVFDGNEWMKLITDRPEALMSAFVIDAGNACHVPGDQIHEVSFLNNKEKH", "sequence_length": 1748, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "9dc2c75059d2d2383caef4d47eaee5b4daefd489f95b1aec2d820815f38971fd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C9ZN16.json", "taxon_id": "679716", "uniprot_accession": "C9ZN16", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Trypanosoma brucei brucei (strain 927/4 GUTat10.1)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/faz1-cons-pf23398.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23398", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/faz1-cons-pf23398.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/faz1-c-pf23404.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23404", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/faz1-c-pf23404.yaml" } ], "pfam_ids": [ "PF23398", "PF23404" ], "protein_name": "Flagellar attachment zone protein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MALLNVISENPLTLQPGQVIAFDHLANGEHWQWALGTVVSSDKHVVVVEQWAVNEGSCETLKHNISSEIQKEMKRMGVFQEQLSSARDKLAAIRSENEDRVSAARAVFEDAKARVASVDEVHMREVTSQACPSPVAVEVLKSVLALAQNDPTVTNCSTWDDIRMEYRRPNAIADFISADITGKTYPNAEEICSSLNEQRLSSLAASRDSEAISSLHHWVLSALAYQEAYCRLTTDTRVQEQNDAIANCIAGMKGCRLKVMKLKEELERGGTPTFGGQLTSFTKTSVQLKAPLSSVISIVGVDPSAQDCVLTDDEVGLILDKAEQTRLQINDHFSHLSNSYMEAMAELHCLSMYTSELEERRLNLQERFVFSLFTNAGKTNAPRRERIETDVGLRSVEAPRGDSANNIKDLQEIIKELSSHDERWMYRNEPTVTTKHRKSYPGREWSKVVERKPEELLSTFRTEQAAACHVPEDAIRNIEFTATSEKLQVSFDVQHPVKQTAAEINKRLQEFPSRGMDRMLCDVDQPKKGLDRAIVEVCRAFDLREHAFRGMTFDKFIEEVAMKGRVGDKDAYESEIGDLLMLLDKIHNENRSLQYTLEKSAEEFRRQTASTMREQESLRQRNGELHAEIGRLRDLVEKLRDLADNQASELELLKLQKTQANQIRAQRNLSTFRGDDTAEPVYCVTLDELREQTEHCDQVERELERQREQCQNLLNAQDDLLAELSGVSEEKEKLEAECERLEAELRQMEEKSRLSEQGLSEMTQRLEEKQAEIEGLLENLEQLDEQLEALRAAEKSAQAHIEARDREISDLQQRLEGEIDDHIKTTALLEELRKHYNNLEELFDKQEAELMAYREKRQNAHKVRSLEPTLRPIGTQTKPFQEMVSADEISSEPLLSVTLDEYNDHMHRSNQFQQENDLLRQQLQQANDERENLHDRLEQLMAENQSLSEQLHNMHEELEREERDRSGVTLQNERLAEEIQRKTAENEQLVLENNKSRSDIRNLNVQVQRLMEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENKRLAEEVTQRLSEKELLAEDTSARLLEADSANSALQCKVKHLEEKLTLLSSEKETALATLEAEIVDLLTQLKGLNGTNSALESLCASKEKELVFLREHCELWTDPTTKKEKVITRHVKVFDGNEWMKLITDRPEALMSAFVIDAGNACHVPGDQIHEVSFLNNKEKH", "sequence_length": 1692, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "56058ca8db2090d2860e055455f910d367950fee9df791744acb7149eecb3475", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q585H6.json", "taxon_id": "185431", "uniprot_accession": "Q585H6", "uniprot_release": "2026_03" } ], "pfam_id": "PF23404", "short_name": "FAZ1_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyostelium discoideum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7107-pf23416.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23416", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7107-pf23416.yaml" } ], "pfam_ids": [ "PF23416" ], "protein_name": "Uncharacterized protein DDB_G0272530", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKIKLILVLIVFLTIVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCESNNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIQGDVCTANNQCKFNNYCKSGKCVPLEKEGSSCDKDSSCSLTNACVGGKCVTKYQKPLGAVCNSSNECQVFSGHVCGANGKCSVYNQLLSKCKENSDCGPNGMCMCKSETENVCVDLSVGALKNDKCPSLLSSFSSCMTRERCTENTPTGCPKCYPIFMCYQYSCFYMNQFIRSTQNYYKSFCS", "sequence_length": 301, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "17ba92d57964325605d8fc5b351d85c4702848553c528fb8ab9ed2dad44df810", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q559I8.json", "taxon_id": "44689", "uniprot_accession": "Q559I8", "uniprot_release": "2026_03" } ], "pfam_id": "PF23416", "short_name": "DUF7107", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23418", "short_name": "DUF7108", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23420", "short_name": "DUF7108_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23421", "short_name": "DUF7109", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23422", "short_name": "DUF7110", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23423", "short_name": "DUF7111", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23424", "short_name": "DUF7112", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23425", "short_name": "DUF7113", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23426", "short_name": "DUF7114", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23428", "short_name": "DUF7115", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23429", "short_name": "DUF7116", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23430", "short_name": "DUF7117", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23432", "short_name": "DUF7118", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23433", "short_name": "DUF7119", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23434", "short_name": "DUF7120", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23435", "short_name": "DUF7121", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23437", "short_name": "DUF7122", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23438", "short_name": "DUF7123", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23439", "short_name": "DUF7124", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23442", "short_name": "DUF7125", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23443", "short_name": "DUF7126", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23444", "short_name": "DUF7127", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23447", "short_name": "DUF7128", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23455", "short_name": "DUF7129", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23458", "short_name": "DUF7130", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7131-pf23465.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23465", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7131-pf23465.yaml" } ], "pfam_ids": [ "PF02862", "PF23463", "PF23465" ], "protein_name": "Probable phospholipase C20G8.02, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MILYIVLPFYVRTKPYSILPSYSSLQWITNAWCSLPSIYILCHCSKHQEEITILALKPLIAMNNSEEWPLKHVQPPKLSFRHLLSRSVTDAPSLRVRWFYAVDRPLRKSRTGPTEIKKAKNFLPFSAEDSEHIEKSYLKAVENDGQSEPVNVNEDYLYSVNVVSRELSPIYWDGPVYRILRGTWFFSRGDKLYPCEENLATQVEEGYLNSCPYREFSNEKDSAAAQSKTWALLGRYTGGFVQYTGSRNARLVYDDFYRNVSVKIMNRFSPASFHRSDKLVRGYELDMLESNSKPSTPVPTEELTSTTLLNDSSDPSDNFTPSNTESTIDLPSATDASHLMSRPDREVNHLILCCHGIGQKMGERVETVSFVKDISNFRKTLKKTFNSSPDLQAVYPKLKGGGNGVQCLPLLWRQDIRFGMARDLDSSFADDDDDDDESLNMSRDLALDDLEDDSIPTLDNINIPTVTGLRNIISDVLLDVLLYCQPNYRDKILAAVVKRLNRLYNLYKKNVPSFNGHVSLLGHSLGALILFDIIRYQGNIKYSKLQLDFPVANFFALGSPLGLFQMLNGKKIAGPIPKTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHPTDPISYRVEPLVVKQMARLKPQKISHFRPHQDLSSSGVGHKIAGGALNVLSGLRSGIANTLILKSLSYASVFNEATADSHDESQGAENIRDWHIDERMYRLNKTGRIDFMLQEGALDTSYSYVSAMNAHSEYWKNVDLAHFILTQLL", "sequence_length": 757, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "371248c9101e332cbee4478940d724b34160a3726b77cb982e2a258b84d67d3f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P87109.json", "taxon_id": "284812", "uniprot_accession": "P87109", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/c20g8-02-like-wwe-domain-ipr057826.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057826", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/c20g8-02-like-wwe-domain-ipr057826.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/pa-pla1-probable-phospholipase-duf7131-ipr055555.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055555", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/pa-pla1-probable-phospholipase-duf7131-ipr055555.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7131-pf23465.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23465", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7131-pf23465.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/wwe-2-pf23463.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23463", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/wwe-2-pf23463.yaml" } ], "pfam_ids": [ "PF02862", "PF23463", "PF23465" ], "protein_name": "Probable phospholipase YOR022C, mitochondrial", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRFTHRGLPSSTRFRNIFVRLNHIYVPWFYAIDVPNSKPYLPTYQTLHSPKKFKPFSVDDSNRLEKASKRQERRPVLVNEDYLFKVDLSHMELSPTYWEGPTYQVRRGVWFDSSNQPLSSDLTSEIEGLYKQLKFDDSNDDPTTTPPAESQDIFRLKGKYPVDKENEGEQKNGSSNKDENESTFKFILFANKQTAFLLSDLDGGKLQLAFLRSNLAQSLPINATMITRSYKYSSSATTKQTSTSFKAAKTPQTEVADGSNSSKSRSIETKLEKKVSNLFNLSDFLQLFNGNASKDQDDAQSLEKQMETDYNNADNSQGANASSKIEDGKNSGASDRQIRSNRRDVDNLILCVHGIGQTLGKKYEYVNFAHTVNLLRSNMKKIYNNSEKLQSLNTAPDYKSNCNVQVLPITWRHSISFQTDAKEENIENPDLPTLSQVTVNGVLPLRKLLADGLLDILLYVEPYYQDMILQQVTSQLNKTYRIFKEFNPEFDGKVHLVGHSLGSMILFDILSKQKKYELEFQVDNLFFIGSPIGLLKLIQRTKIGDRPEFPNDLERKLTVQRPQCKDIYNVYHVCDPISYRMEPLVSKEMAHYEQTYLPHCSEAYGLTSKVLEFGENIWKDLPGTDENNLQSKKTSPEKKEVKLSENLTRMLTGLNYTGRLDYAMSPSLLEVDFISAIKSHVSYFEEPDIAAFILKEILSKHENASEIYVKRKTG", "sequence_length": 715, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0b3505f5c7eaceb127989a224b958e7a282a8bf079f61dcf45519ded47b90ae1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q12204.json", "taxon_id": "559292", "uniprot_accession": "Q12204", "uniprot_release": "2026_03" } ], "pfam_id": "PF23465", "short_name": "DUF7131", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23476", "short_name": "DUF7132", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23500", "short_name": "DUF7133", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23539", "short_name": "DUF7134", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23542", "short_name": "DUF1512_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23543", "short_name": "DUF6688_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Cynara cardunculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7135-pf23581.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23581", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7135-pf23581.yaml" } ], "pfam_ids": [ "PF08553", "PF23581" ], "protein_name": "Protein CYPRO4", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"examples": [], "pfam_id": "PF23584", "short_name": "DUF7136", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23585", "short_name": "DUF7137", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23596", "short_name": "DUF7138", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23600", "short_name": "CdpA_N", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23601", "short_name": "CdpA_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23614", "short_name": "DUF7141", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lotus japonicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-lin-2nd-pf23654.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23654", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-lin-2nd-pf23654.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-lin-c-pf23628.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23628", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-lin-c-pf23628.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-lin-pf23568.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23568", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-lin-pf23568.yaml" } ], "pfam_ids": [ "PF00400", "PF04564", "PF23568", "PF23628", "PF23654" ], "protein_name": "Putative E3 ubiquitin-protein ligase LIN-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MARNFRFMMDQKDIVRFLTTTVDSFIQDRLINKEQRTQHKEQCAERLAAEDGSGDKDTEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKIAGVPNSYLSAWAHLNLSYLWKLRNNVQNCISHALEMFIVDPFFTRIDFAPELWKSLFLPHMSSIVGWYSEERHRLMMEVIPDSADLSFTADFEQFFNESLVLTMRPHQLEKLQKLEQLYGESLDENTKLYAKYYNDCMNSDSSSSKKAVPMLPIAEPPMTPLHELSRTIPDFVKFGPILPKSAGFSLAPRSKDVLNETIRENVTSSNLKEEKLSIWGAKDTIIEENEDDSDSELENESVDSDDKNNIFSPGMKMMKYEGVETKVDLSCQRNQIPSPDIFSPLDSPRTAPNNSSPNPDMHSKRDSKFLRLSSSRIREPTISDSLTSSPDISIDNISNADNEVMVLKNIQRKNDNQTLSMNHENENSLILNGSSLCESDDGYQSFNSLPKLEKLSMGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSASILPKTNYVLKRLITSWKEQNPELAQEFSNVNTPRGSSCSPSAKDIPMLSTRQRTTDSPNHKNKDYARQRSNRFMPAAITTSPTSVLSQAAVETIVNSLKPYISSLCTSENLPECEEAVLKIARLLKDSKTNPQIHSYLSKPTIINGLVEILSASRNREVLRTSIYILSELIFTDDSVAETLNSVDSDFDCLATLLKNGLAEAALLIYQLRPVFAQLSAHELIPSLVDVIQNKNEELDDFQLVIDPKDAAIAILEQTLMGGDEYSRSLNASSVISANGIPTLVKYLERMEGRRSVVSVLLCCMQAEKSCKNLIANRIELSPVLELFHSGNDSVRGTCVEFLSELVQLNRRTSCNQILHTIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNTQMKALDALLFLIGHISSSGKSYTEAWLLKIAGFDQPYNALMKVEQLGQHDNDLIETMEDEKNALNSWQKRIASVLCNHENGSIFKALEECLKSNSLKMAKSCLVLATWLTHMLYTLPDTGVRDVARKSLLEEVINVLQSSKNLEEKILATLALKTFISDPSTHEALRVYAKSIYRTLRRLKKYSVVAVDIMKVILNLKSVDVTELWSCKEVVELDLSSNGEVLSMVYLNGQVLSGHTDGTIKVWDARKRIPRVIQETHEHTKAVTSLCSSGDRLYSGSLDKTIRVWTIKSDGIKCIDVYDIKEAVHELAANDKLACYVSQGTGVKVFNWSEAPKLINFSKYVKSLAVAGDKLYCGCSGYSIQEVDLSTYTSNSFFTGTRKLLGKQTIHSLQIHDDYLFACGSSVDATAGKIFSLSQKMVVGSLSTGLDIHRIAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGHTKITSLVSDVDGMMLFVGSSDGKIQVWALD", "sequence_length": 1485, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a68753efeb4667b7bad39131cd29e94e1edc43c3534e7a405c9f020dba5d54ae", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/C6L7U1.json", "taxon_id": "34305", "uniprot_accession": "C6L7U1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Medicago truncatula", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-lin-2nd-pf23654.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23654", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-lin-2nd-pf23654.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-lin-c-pf23628.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23628", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-lin-c-pf23628.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-lin-pf23568.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23568", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-lin-pf23568.yaml" } ], "pfam_ids": [ "PF00400", "PF04564", "PF23568", "PF23628", "PF23654" ], "protein_name": "Putative E3 ubiquitin-protein ligase LIN", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGNFRFMMDQKDIVRFLTTTIDSFIQDRLINKEQRTQHKDQCAERLAAEDGNTDKETEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIKSCIYHSLEMFIVDPFFSRIDFAPELWKNLFLPHMSSIVGWYSEERHKLMMEVLPESTDFSYTADFDKVFNESLVFSMRPNQLEKLQKLEQLYGESLDENTRLYAKYYNDCMNPDSTSSKKVVPMLPIAEPPMTPLHELSRSVPDFVKFGPILPKSSGFSMTTRRSNDGLNETTRENIASNSNHSKGEQSSLWAAKESIIEEIEDDLDSEHYDASVDSDKINIFSPEPKKNIKDEDVEPKVYRSNQKNQMNSPNISPMESPRRASNYSSTNPLRRKKESKFLRLLSNRFTGSIVSDHSLSSSPDTSSDHIFTGDEEVMVRNNIKRKNDSQTPSMNQDNENSLVLNDSSHCESEDGYQSSSSFPKLEKLTIGSKPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQALSANILPKTNYVLKRLIVSWKEQNPELAQEFSNSNTPRGSSCSPSAKDITMVSSIQRTTDSPSQKYKDDYIRQRNNRFTRVSVGASPTSVLSQAAVETIINSLTPYITSLCTSENLQDCEQAVLEIARLWKDSKTDPQIHSYLSKPTVVSGLVEILSASLNREVLRRSIYILSELIFSDERVGETLNSVDSDFDCLAMLLKNGLAEAALLIYQLRPVFAQLSEHELIPSLIQVIQNKSEDIDDFQLAIDPKAAAIAILEQILIGGDEYNRSVNASSVISANGIPAIVKYLDKTEGRRPVISILLCCMQAEKSCKSSIANRIELSPVLELFHAGNDSVRGICVEFLSELVRLNRRTSSNQTLQIIKDEGAFSTMHTFLVYLQMAPMEHQIAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNNQMKALDALLFLIGHVTSSGKSYTEAGLLKIAGFDQPYNVLMKAEQLGHSDNDFMETMEDEKNAMKSWQKRVASVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLFTLPDTGVRDVARKSLLEALMNVLQSSKNLEEKILASLALKSFISDPTVHEVLRVYAKSIYRILRKLKKYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYLNGQVLSGHADGTIKVWDARKRIPRVIQETREHKKAVTSLCSSVDKLYSSSLDKTIRVWTIKPDGIKCIDVYDVKEAVYELAANAKLACYVTQGTGVKVFNWLDAPKFINFNKYVKCLAVSGDKLYCGCSGYSIQEVDLSKYTSTSFFTGTRKLLGKQTIHSLQIHDDLLFACGSSIDATAGKIFSLSSKMVVGSLSTGLDVHRVAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGNTKITSLASDADGMMLFVGSSDGKIQVWALD", "sequence_length": 1488, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7d75e271cca470fb0136091c6a08857459aae104958ae30b9e3752518ed2506c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/D1FP53.json", "taxon_id": "3880", "uniprot_accession": "D1FP53", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Lotus japonicus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-lin-2nd-pf23654.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23654", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-lin-2nd-pf23654.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-lin-c-pf23628.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23628", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-lin-c-pf23628.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/arm-lin-pf23568.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23568", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/arm-lin-pf23568.yaml" } ], "pfam_ids": [ "PF00400", "PF04564", "PF23568", "PF23628", "PF23654" ], "protein_name": "Putative E3 ubiquitin-protein ligase LIN-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAGNFRFMMDQKDIVRFLTTTVDSFIQDRLINKEQRTQHKEQCAERLAAEDGSGDKDTEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKIAGVPNSYLSAWAHLNLSYLWKLRNNVQNCISHALEMFIVDPFFTRIDFAPELWKSLFLPHMSSIVGWYSEERHRLMMEVIPDSADLSFTADFEQFFNESLVLTMRPHQLEKLQKLEQLYGESLDENTKLYAKYYNDCMNSDSSSSKKAVPMLPIAEPPMTPLHELSRTIPDFVKFGPILPKSAGFSLAPRSKDVLNETIRENVTSSNLKEEKLSIWGAKDTIIEENEDDSDSELDNESVDSDDKNNIFSPGMKMMKYEGVETKVDLSCQRNQIPSPDIFSPLDSPRTAPNNSSPNPDMHSKRDSKFLRLSSSRIREPTISDSLTSSPDISIDNISNADNEVMVRNNIKRKNDSQTPSMNQDNENSLVLNDSSHCESEDGYQSSSSLPKLEKLSMGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSASILPKTNYVLKRLITSWKEQNPELAQEFSNVNTPRGSSCSPSAKDIPMLSTRQRTTDSPNHKNKDYARQRSNRFMPAAITTSPTSVLSQAAVETIVNSLKPYISSLCTSENLPECEEAVLKIARLLKDSKTNPQIHSYLSKPTIINGLVEILSASRNREVLRTSIYILSELIFTDDSVAETLNSVDSDFDCLATLLKNGLAEAALLIYQLRPVFAQLSAHELIPSLVDVIQNKNEELDDFQLVIDPKDAAIAILEQTLMGGDEYSRSLNASSVISANGIPTLVKYLERMEGRRSVVSVLLCCMQAEKSCKNLIANRIELSPVLELFHSGNDSVRGTCVEFLSELVQLNRRTSCNQLLHTIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNTQMKALDALLFLIGHISSSGKSYTEAWLLKIAGFDQPYNALMKVEQLGQHDNDLIETMEDEKNALNSWQKRIASVLCNHENGSIFKALEECLKSNSLKMAKSCLVLATWLTRMLYTLPDTGVRDVARKSLLEEVIKVLHSSKSLEDMILVTLSLYPFISDPTVHEVLRVYAKSIYRILRKLKKYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYLNGQVLSGLMDGTSKVCDARKRIPRVIQETHEHTKAVTSLCSSGDRLYSASLDKTIRVWTIKSDGIKCIDVYDIKEAVHELAANDKLACYVSQGTGVKVFNWSEAPKLINFSKYVKSLAVAGDKLYCGCSGYSIQEVDLSTYTSNSFFTGTRKLLGKQTIHSLQIHDDYLFACVSSVDATAGKIFSLSQKMVVGSLSTGLDIHRIAINSDFIFAGTKFGTIEVWLKDKFTRVASIQMAGGHTKITSLVSDVDGMMLFVGSSDGKIQVWALD", 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"FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium phage L5", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf7199-pf23829.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23829", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf7199-pf23829.yaml" } ], "pfam_ids": [ "PF23829" ], "protein_name": "Gene 76 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKAWHVVLLMCLAVVLGNLPGIIAEASASPLCEYRSAAHIAEHGGKVADDAWHIKHGELPSCDESPKGEARRDNDNRDGGKSRFCRKRWYC", "sequence_length": 91, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4ffbe184430818b88d7e6cb3b3f06c28217dbe5c519bb724aabf1b26cbc138a4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q05291.json", "taxon_id": "31757", "uniprot_accession": "Q05291", "uniprot_release": "2026_03" } ], "pfam_id": "PF23829", "short_name": "DUF7199", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23830", "short_name": "DUF7200", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23831", "short_name": "DUF7201", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7202-pf23832.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23832", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7202-pf23832.yaml" } ], "pfam_ids": [ "PF23832" ], "protein_name": "Uncharacterized 8.5 kDa protein in tk-vs intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNIHYPHPYDPKNKAVIIRQWERICRTKCPINSPHDVDKDYIGTFVEYTFIDKKGRKQHVEEYCLKVTWL", "sequence_length": 70, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6879bae3c8227c6dc60b19cd0a2e833d9319a802ffae1a59a6dd755172046748", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P13308.json", "taxon_id": "10665", "uniprot_accession": "P13308", "uniprot_release": "2026_03" } ], "pfam_id": "PF23832", "short_name": "DUF7202", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf7203-pf23833.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23833", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf7203-pf23833.yaml" } ], "pfam_ids": [ "PF23833" ], "protein_name": "Uncharacterized 12.0 kDa protein in nrdC-mobD intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLYSKAREIYETKIKEAVFQFATTMRWTNDWEYSKNHKKPLVTRKAHMLVLIDREQIKAREALQNHKKAAFEWFMDNTAPETKKAVSAWFSGKNCERSFF", "sequence_length": 100, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "438f8d269d417b48423d88fb45129f7237d2a9807cb6e7b3b33dc6f330ddac20", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P39260.json", "taxon_id": "10665", "uniprot_accession": "P39260", "uniprot_release": "2026_03" } ], "pfam_id": "PF23833", "short_name": "DUF7203", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23834", "short_name": "DUF7204", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23835", "short_name": "DUF7205", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, 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"MFIFNWFKSFFTDFFSTTPGEGVVPISNDYLPLTVVEYVYMGDGTVEAVTMTYEEAQEYYKNPWRWSTPTTSSNTQNTQSSSDSYDTNVPVHVWAGDSCGSSCDSSCSSTSCD", "sequence_length": 113, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e21873937f656223aca398ffbffb392a8f89692f11e35e0df75d751fb450452d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P20706.json", "taxon_id": "10665", "uniprot_accession": "P20706", "uniprot_release": "2026_03" } ], "pfam_id": "PF23836", "short_name": "DUF7206", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23837", "short_name": "DUF7207", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23838", "short_name": "DUF7208", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterococcus phage phiEF24C", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf7209-pf23839.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23839", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf7209-pf23839.yaml" } ], "pfam_ids": [ "PF23839" ], "protein_name": "Virion protein 6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNYPKREKVVEVSLASGTYSVFPRRLGVTTNDAMSIVNGAMKGAELPMIPVHKLADRDSELTYVNAFQIQTATENIVDVPERITSLYTKPEDETPEDEEVRLGTINNYFSLR", "sequence_length": 112, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": 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"pfam_id": "PF23850", "short_name": "DUF7213", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23851", "short_name": "DUF7214", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23852", "short_name": "DUF7215", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23853", "short_name": "DUF7216", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23854", "short_name": "DUF7217", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23855", "short_name": "DUF7218", "status": 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"commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7225-ipr055649.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR055649", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7225-ipr055649.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7225-pf23870.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23870", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7225-pf23870.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf6998-pf22522.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF22522", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf6998-pf22522.yaml" } ], "pfam_ids": [ "PF22522", "PF23870" ], "protein_name": "Uncharacterized protein YnaC", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTIYEQIKDALKNKINELVSPQEVKKTLQEKYGTNPDSIILSDYCYNRYNKGISFNKHLFEYMNRSSYKYLGENSLYTGLIFRKSKGEDKEVIVGEWVNGVKSLREASVTNNQINDQAEIISKEQLVNLYNEYNQILRYEMNVLNCKPTELRHLIGRIGEFICAIQTNGTLARQTNQHGFDVVSDGRRISVKTTAQSSGFISINKNTFYDFDDFFVVQYVNDDFKVIFFGSKEEVQKISRIYGSQYEVEISLLKKLNKEYQLN", "sequence_length": 263, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ab8333cb6e019ac55e418809faddb6555fc158ab683e775da753725ca6ccdc63", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P94481.json", "taxon_id": "224308", "uniprot_accession": "P94481", "uniprot_release": "2026_03" } ], "pfam_id": "PF23870", "short_name": "DUF7225", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23871", "short_name": "DUF7226", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23872", "short_name": 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[] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23880", "short_name": "DUF7233", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23881", "short_name": "DUF7234", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf7235-pf23882.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23882", "section": "canonical_examples", "url": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf7248-pf23906.yaml" } ], "pfam_ids": [ "PF23906" ], "protein_name": "Uncharacterized 4.3 kDa protein in ndd-denB intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLIFALGSVVVGIYLMAVVGMDIHQNGLKSVVETIWNGVK", "sequence_length": 40, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f1c212782da85274af1cb5131b1f5da45468ca458384804993813125b62d62a2", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P39245.json", "taxon_id": "10665", "uniprot_accession": "P39245", "uniprot_release": "2026_03" } ], "pfam_id": "PF23906", "short_name": "DUF7248", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23907", "short_name": "DUF7249", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7257-pf23918.yaml" } ], "pfam_ids": [ "PF23918", "PF24243" ], "protein_name": "Gene 31 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTFPTNPLEAIGADGAFEIGGGDFSFGQDYTEQIIRSLFTMPPVRLDNAITLLREHLLKLPLEALQRFKEMIPDWAEGAFDTATGAVDAIMDALSEGPLFLKLAEFQVFLQRLLTEPGEVIGEIPQALVNGLTSALETVNNTIQTIVDMLLQALGINPKGDLLDRIFDLSDEIEWLRDTASQVASGLQQTWNHFWSALTGRSPGEDQTVVEPAEQIGELAGTTQSNSSAIAELQARLDAQDHTGIAGGDDFERVNTTAVGPGWAEFYTGGGYGSGRGYYAIKDGHQAEWTDQGATQNTARFVRTDPADEKTVTDYQKMTLVVGTIPGEAAGLFRGGSHIRLWLRVNDNAPTVGITDGVYVEVGGANLAQLGYRRRGSDHFVGSAFNCSWGAGTIFTLVAGTVDGIEKVEFYKNGSRLALWSDDGLRSAIGAGFRRWGWEGQARNRNLGQGTPSSVTRVTINDNDPSGLGGGSVHLETGVVGILQIPNGGTGATSAAEARANLGAEAAIPAGTVAQYWRGDKTWQPLNKVAVGLHLVDNTSDAQKMSAPAVLTNKTISGADNTLTDIPVAALGLGAVNAVRVIAGVPIPNSVTIWIGTEAQFQALPTKDANTLYFRTA", "sequence_length": 617, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b8e878f3a6c3b644ed1d8968be82932b24c676fd091410dbcbf27359d7dae539", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O64225.json", "taxon_id": "28369", "uniprot_accession": "O64225", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium phage L5", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7257-pf23918.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23918", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7257-pf23918.yaml" } ], "pfam_ids": [ "PF23918", "PF24243" ], "protein_name": "Gene 31 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTYPTNPLEAIGADGAFEIGGGDWSFGQDYTEQAIRALFTMPAVTMENALGLLEEHLLKLPLEALQGFKDMIPDWVEGAFDTVTGAVQAIMNALQDGPLFLKFAEFQLFLQRLLNNPAEVIGEIPQTLIDGLQDALNTVNNTIQTIVDMLLQALGITPEGELIDRIFDLSDEMEWLQTAASNAATGIQDTWNKFWGALTGRVPDQDQTVAEPAERIGELAGTTSANSSAIAELQRRLDNQQNAGGVAGGDDFERLNISGWDIRYSNGSSGRGYYRADGHQLVWMDEGNQQNTATFVRTNPADEKTATDYQKMTLVVGTISGEVQTVFPPQGGSHTRLWVRVNDNAPTVGITDGVFVEIGGVSKAQIGYRRNGNDTFVGSMVDCTWGAGSIFALTAGTANGAEKFEVSKNGPVLATWSDDGVVSAMGANYRRWGWEGQARNRNLGQGTPNSVTRVTITDNDPTGAGGGAVNVGGDVVGVLPIENGGTGASTASAARTALGIDDLVEDMSDVVRGSVEGLPLIPKIWVGTEAQYTALATKDQSTLYFRTA", "sequence_length": 548, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "de4e47137b29433a0c94f1c304a3f257f0cc87cb7f339894e7bdcffb46ec6cd0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q05240.json", "taxon_id": "31757", "uniprot_accession": "Q05240", "uniprot_release": "2026_03" } ], "pfam_id": "PF23918", "short_name": "DUF7257", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23919", "short_name": "DUF7258", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23920", "short_name": "DUF7259", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23921", "short_name": "DUF7260", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23922", "short_name": "DUF7261", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23923", "short_name": "DUF7262", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { 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"short_name": "DUF7273", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23939", "short_name": "DUF7274", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23940", "short_name": "DUF7275", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23941", "short_name": "DUF7276", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23942", "short_name": "DUF7277", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23944", "short_name": "DUF7278", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Enterobacteria phage T4", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf7279-pf23945.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23945", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf7279-pf23945.yaml" } ], "pfam_ids": [ "PF23945" ], "protein_name": "Uncharacterized 10.2 kDa protein in sp-Gp41 intergenic region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MHIVLFKPTPYNVRKNTQFKALIADTWELVLDIPAEESPPFGRVEFIKFAVRPTKRQIRQCKRYFRKIVKLEKQFVTCDYAEILK", "sequence_length": 85, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d91e62676ecec05d74b426ef6b7ed2381314882784cc0b4a778aa2fb4c01ea1b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P39231.json", "taxon_id": "10665", "uniprot_accession": "P39231", "uniprot_release": "2026_03" } ], "pfam_id": "PF23945", "short_name": "DUF7279", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23946", "short_name": "DUF7280", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23947", "short_name": "DUF7281", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haloarcula hispanica (strain ATCC 33960 / DSM 4426 / JCM 8911 / NBRC 102182 / NCIMB 2187 / VKM B-1755)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7282-pf23951.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7282-pf23951.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7827-pf25162.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25162", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7827-pf25162.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/pgf-cterm-pf18204.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18204", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/pgf-cterm-pf18204.yaml" } ], "pfam_ids": [ "PF18204", "PF23951", "PF25162" ], "protein_name": "Cell surface glycoprotein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDTNEKIRSLFLTALMVFSVFAGTIAFSGGAAAAANVSVQQAAEYDSGTVELALNGSTGSTVNTGDIDIYVDGNKNPSNYGVSSVDTTDDGTTGRLQFSLDQDVQPNRNLTVKVSGLTGGDNTVVAEDIDVTSQTIDADDDSGDTNAFRGEVLAIRADGDTDNDDATSSTKIVVEDSNGAVVTQDTYTANSKVYTYETENLDTGEEYEVSVAGDADENITISNLDLNVNIDDDVGDGANIDDKDTLAVNVSTTRGGEPANATLFNEDDDKVATQVESLKGNENVVFDFGNQSADDSPYYVKVTDNQTGVSAESDQINVSESDDGEASFESSTVQDNIGDVVNITVQVDNTEDAVINIGDENDDNYYIQGQLEDDNGDGEVTVQFNSYTAGNYSDSTVLSVPGDDDIDNIKEGGDYTRGSLSGDTLEAGSYSMNVTAGTSPDVTSPDTVGTLRLNENSVENIQTWAAPSDADIDDDDVDIYDRIGENLTQSDDVAAEDVVVHEIQASGIEGALEYEQEDGSASDVTEAFIAATDTTPYRINDSDATTSGLRLYVNRTDVGANADANPIDFSNSSDAVTVVDDPDNNTYFVAVDTSDVVFENGKTIVKEEDTRLNATFSVREGPLTDDRNSDSAIYTTSERDATLDLDDSGVVTVSAAAGQEVTGETNVAPGSELEVEMESESDANPFVIRPEVDVATDGTYTATADFQDYSAGTNFTVQTLDVDGDSDFSDEEDGRIVEADTATVSISEQESDGSEVVVDSAQLSEGGFIAIHAGNASGDVVGNSEYLGAGSHEDITVTLDEPMDEDFTAVAMPHQDTNGNEAYDFPGDDDPYTQNGSAVTDSANVTIVEEEQTEAPDTETETEAPDTETEEETDAPATDEPATDESETTAAEGPGFTAAIALIALVAAALLAVRRDN", "sequence_length": 918, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b490fbe092f18d5ca9f2f307032efcb6a8b7c001cddfd97e5477bc179956dccd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G0HV85.json", "taxon_id": "634497", "uniprot_accession": "G0HV85", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haloarcula hispanica (strain ATCC 33960 / DSM 4426 / JCM 8911 / NBRC 102182 / NCIMB 2187 / VKM B-1755)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7282-pf23951.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7282-pf23951.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7827-pf25162.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25162", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7827-pf25162.yaml" } ], "pfam_ids": [ "PF18204", "PF23951", "PF25162" ], "protein_name": "Cell surface glycoprotein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGNSDKVRSLFLTALMVFSVFAGTIAFSGGAAAAANVSVQQAAEYDSGTVELALNGSTGSPVTTGDINIYIDGNENPSNYGVSSVDTTDDGTTGRLQFSLDQDVQPNRNLTVEVSGLTGGDNTVVAEDIDVTSQTIDADDDSGDTNAFRGEVLAIRADGGEGDADDATSSTQIVVEDSNGAVVTQDTYTANSKVYTYETENLDTGEEYEVTVGGTADENITISNLDLNVNIDDDVGDGANIDDTDTLAVNVSTTRGGEPANATLFNEDDDKVATQIKSLKGNENVVFDFGNQSADDSPYYVKVTDNQTGVSAESDQINVSESGEGDASFETSTVQDEVGDVTNITVQMGNTENAVINVGSQNDDNYVIQGQLEDDNGDGEVTVQFNSYTAGTDNNNTVLTVPGDDDLDEVEEKGSFTDSRNSLDEDVLEPQSYSINVTAGTSPDVTSPDTVGTLRLNENSVESMQTWVAPSDADIDDEDIDIYDRIGENLTQSDDVAVEDVVVHEIQASGIEGALEYEQEDNGSSDVTDAFIAAADTTPDRINDDTSASGLQLYVNRTDVGANADADPINFANSSSAVTVVDDPDNNTYFVALDTEDVEFESGNTITEEEDTEINATFSVQEGPLTDDSSSESELYTTSERNAELNLDDDGFVTVGAAAGQTVSGDTNVAPGSELEVEMESESEANPFVERPEATVGPNGTYVATEDFSDYSAGTNFTVQTLDVDGDSDFSDEEDGRIVEADTATVSISDQESDGSEVVVDSAQLSSGGFIAIHAGDASGDVVGNSEYLEAGTYNDLTITLDEPMDENFTAVAMPHQDTNGNEEYDFPGDDGPYTQNGSAVTDSANVTVSAEEPEDTPEDTPEDTPEDTPEDTPEDTPADTPEDTPDTGTETTEAEGPGFTAAIALIALVAAALLAVRRDN", "sequence_length": 922, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "76fb66de5c81e833c13326d3e46c5013a88dc823cee711ba96b1763f2e922a8b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G0HV86.json", "taxon_id": "634497", "uniprot_accession": "G0HV86", "uniprot_release": "2026_03" } ], "pfam_id": "PF23951", "short_name": "DUF7282", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23954", "short_name": "DUF7283", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23955", "short_name": "DUF7284", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23956", "short_name": "DUF7285", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23957", "short_name": "DUF7286", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf7287-pf23958.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23958", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf7287-pf23958.yaml" } ], "pfam_ids": [ "PF23958" ], "protein_name": "Uncharacterized protein AF_0763", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDNQAKLSLDLLLGLSIFLTTFLFVANFLPGIFADVRHEIALGSHAYRVAALLVEDPGYPDDWCTAVDTSNCISKEFRPGLAIFDENNGTEYNYLNTSKIFKLQELLSNSACRDTVRNYLGLNSTNFKYKFYFSLKYLNDTEIVSGGDNLPEMGNIIKFDRLVYVDNCTAIPCESIAERCVCKLEVAVWI", "sequence_length": 190, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "65129f07f1263651376c28cb89027528c67a9056c3bd74eacffacb09717a6ced", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O29495.json", "taxon_id": "224325", "uniprot_accession": "O29495", "uniprot_release": "2026_03" } ], "pfam_id": "PF23958", "short_name": "DUF7287", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf7288-pf23959.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23959", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf7288-pf23959.yaml" } ], "pfam_ids": [ "PF23959" ], "protein_name": "Uncharacterized protein AF_0762", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCLQIGGGGMDLRGQTFTLEGVAASLLILLAVYTIFQSTVVIAPSWSDYANVQLKQLGYDILRVFDSDGGNSSLKGAIVNCSSGFKAPDEFNANLSKILDSLNAFGKVELIWVNGSKIESHALYGFNKTPTPDAVRVSRFVVVQDLNNSECFNLTTPTTKVVEVRLTLWRT", "sequence_length": 171, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d8b26af6f05af41fc42f49b4a03dde5d3ccb5a4dd206d9fb53fb50f11ac47d62", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O29496.json", "taxon_id": "224325", "uniprot_accession": "O29496", "uniprot_release": "2026_03" } ], "pfam_id": "PF23959", "short_name": "DUF7288", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf7289-pf23960.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23960", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf7289-pf23960.yaml" } ], "pfam_ids": [ "PF23960" ], "protein_name": "Uncharacterized protein AF_0759", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLYHLNNNGVSEVVGALLTVVVIVTAAGIIYVISHPVIANSIDNVNYQNAVKNMAEIKEIVQRMKYGSEVATSKVIQLNGGSMSNARFFNFTVFTTELPPGLQGNPNPNINAIIHAAHDIEVDWYTHTLNIEIAGREIVFESGIFVKEYGSVNPIPISEPDIIVTNDTLYLSIYDFIGDYSAGGQKITINFKHNFTTIFSNVTSFELKSEFCDIWKKSFEKALNDVPSKPADFEDDDCIDNTIKIKKASGDISIIFTRVEVT", "sequence_length": 262, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "de5bfd2e48905654b18b802c4c1b7543a6820ae6bd361ee0bf30a2e2e7d8871b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O29499.json", "taxon_id": "224325", "uniprot_accession": "O29499", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf7289-pf23960.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23960", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf7289-pf23960.yaml" } ], "pfam_ids": [ "PF23960" ], "protein_name": "Uncharacterized protein AF_0758", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSKAVSEILGYMYIFGIVMAVLAIVFVQVNTMTEDMKRSVMSQSLEQSFKKIQYIIHSVSFGEVPSQAVEIELQGGTLTLDKSDPEFIVAFVNYTETNPSNLPCGRVPNSVPLCINLSTGRLYTACTHTGYNFSACTLNHTIGKIVYRYKDWFLTLEAGSVFSKYSNQDYSKLLYEPRILYNATLSTPGKRFLVMTIPLLDGELSIGGSGRFRFVLNEGNSNVSLISVSNLGQDFNDAYVILRGTENKDAWCRFFERSGDVFNTTLDDTKTSYRRCSNSENAMASIKLSNVHEIIVIFRQVLFST", "sequence_length": 305, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2b62af322a307d8b92b29aaa164fab686b68e9eb4afb0c20ef4b674bd94a7672", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O29500.json", "taxon_id": "224325", "uniprot_accession": "O29500", "uniprot_release": "2026_03" } ], "pfam_id": "PF23960", "short_name": "DUF7289", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23962", "short_name": "DUF7290", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23963", "short_name": "DUF7291", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23964", "short_name": "DUF7292", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23965", "short_name": "DUF7293", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23966", "short_name": "DUF7294", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23967", "short_name": "DUF7295", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23969", "short_name": "DUF7296", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23970", "short_name": "DUF7297", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23972", "short_name": "DUF7298", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23973", "short_name": "DUF7299", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23974", "short_name": "DUF7300", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23975", "short_name": "DUF7301", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium phage D29", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf7302-pf23976.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23976", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf7302-pf23976.yaml" } ], "pfam_ids": [ "PF23976" ], "protein_name": "Gene 18 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRIQSTVNGGFAEVSDEYAQRLIAAGGWKRPRKPRTTKPKPAPKQEPATEE", "sequence_length": 51, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e7564d3a7eeae8cc7e405bd60d73f824fb0694138081cce7b62004754e00dc36", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O64211.json", "taxon_id": "28369", "uniprot_accession": "O64211", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium phage L5", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf7302-pf23976.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF23976", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf7302-pf23976.yaml" } ], "pfam_ids": [ "PF23976" ], "protein_name": "Gene 18 protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MWSRKDHMRIQSTLNGGFAEVSEEFAKQLIATGGWKVPRKPRNTKTKTAPEEPKNEE", "sequence_length": 57, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7244796c13d235f6740a7443d1ef11ea5e947af528070fe91b2d008750465761", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q05224.json", "taxon_id": "31757", "uniprot_accession": "Q05224", "uniprot_release": "2026_03" } ], "pfam_id": "PF23976", "short_name": "DUF7302", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23978", "short_name": "DUF7303", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23979", "short_name": "DUF7304", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23981", "short_name": "DUF7305", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23983", "short_name": "P11_C", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23984", "short_name": "DUF7307", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23985", "short_name": "DUF7308", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23988", "short_name": "DUF7309", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF23991", "short_name": "DUF7310", "status": 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"candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24500", "short_name": "DUF7589", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24503", "short_name": "DUF7590", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24511", "short_name": "DUF7591", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24512", "short_name": "DUF7592", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24513", "short_name": "DUF7593", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis subsp. natto (strain BEST195)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm96-pf24517.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24517", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm96-pf24517.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6531-pf20148.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20148", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6531-pf20148.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/rhs-repeat-pf05593.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05593", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rhs-repeat-pf05593.yaml" } ], "pfam_ids": [ "PF02018", "PF05593", "PF20148", "PF24517", "PF25023" ], "protein_name": "tRNA(Glu)-specific nuclease WapA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSEYYFYYKRREKMKKRKRRNFKRFIAAFLVLALIISLVPADVLAKTTEEENGNRIVADDPEETLQKEQTEEAVPFDPKDINKEGEITSERTENTKLYYEGDGVYKQEVYLDPIHTKETPDADWEDISPELKESTSKQVETENAILNSDFQKQMKNGLYATFEHNDHKVTYSLVEAKAPNKTSLTPKDTSADYKTDSNEIVYPDVFPNIDLQTFTFNENIKEDLVLHQYDGYNTFTFQLKTDLQAKEQEDGSIDFSDEKGKVVFSVPKPFMTDSKLDELSGEVERSDKVSYKLEKNEEGYLLHLTADENWLKDPERVYPVSIDPSTSLSVSSDTFVMSAYPTTNYSASSQKWDANLKAYVLKTGYYDKTTGTNYAFMKFNNLKPIQNMTVTKATLKTYVAHSYYGTKATGLWLDTVNSNYDNAKVTWNTKPASKNIGKADVHKGQWASYDVTAAVKSWNSGGANYGFKLHTNGNGKEYWKKLISSANSANKPYIEVTYTIPKGNTPTIKAYHNGDSTGYFDISWKKVEGAKGYKVWIYNGKEYQAISAGNVTSWSTKGKKIWPTSAEIASKRYKLHLDGKDGAELALDPSPVYKNSGGSYATSKNYWIGVSAIFDQGEGAMSAPAKPVIPNVGKAQAPSAKGYNNGNATGYFDLSWKAVSGATGYKVQVFNGKGFETLDLGNQTSWTTKGKKIWPTSAEIKAGKYALHLKDGSGAELPINPGPTYKNAGGDGAKKNYSFKIIAYNKDGEAIASPAANPALPDIARPKNLTGYLYTNTKSSQTGYVNLIWEKVQNAKGYKVNIYNGKEYQSFDVGDADHWTTQNKNIWPTSEEIKAGSYKLHTDGKGGELALDPSPVYNNANGNYKGKKNYSFTLVAYDANGETIPTAPFNPTFHEGAEFLGTEEYWSIIDIPSGQLNGATGNVIVNEEDLSIDGRGPGLGLSRTYNSLDSSDHLFGQGWYADAETSVISTDGGAMYIDEDATTHRFTKKADGTYQPPTGVYLELTETADQFILKTKDQTNAYFNKKGGKLQKVVDGHNNATVYTYNDKNQLTAITDASGRKLTFTYDENGHVTSITGPKNKKVTYSYENDLLKKVTDTDGTVTSYDYDGEGRLVKQYSANSTEAKPVFTEYQYSGHRLEKAINAKKETYVYSYDADKKTLLMTQPNGRKVQYGYNEAGNPIQVIDDAEGLKITTNTKYEGNNVVEDVDPNDVGTGKATESYQYDKDGNVTSVKDAYGTETYEYNKNNDVTKMKDTEGNVTDIAYDGLDAVSETDQSGKSSSAAVYDKYGNQIQSSKDLSASTNILKDGSFEAQKSGWNLTASKDSGKISIITDKSGVLSGSKALEILSQSTSAGTDHGFSSATQTVELEPNTTYTLSGKIKTDLAKTRAYFNIDLRDKDQKRIQWIHNEYSALAGKNDWTKRQITFTTPANAGKAVVYMEVDHNDKDGKGKAWFDEVQLEKGEVSSSYNPVQNSSFTSATENWNVSGASVDSEEGFNDDVSLKAARTSASQAGSVTKQTVVLGQSANDKPVYLTLTGMSKASSVKFTDEKDYSLQANVTYADGSTGVYNAKFPSGTQEWNRAAVVIPKTKPINKVDISILFQKSATGTVWFDDIRLIEGSLLTKSTYDSNGNYVTKEEDELGYATSTDYDETGKKTAETDAKGEKTTYTYDQADQLTNMTLSNGTSILHSYDKEGNEVSKTIRAGADQTYKYEYDVMGKLVKTTDPLGNVLASEYDANSNLTKTISPNGNEVSLSYDGTDRVKSKSYNGTEKYNFTYDKNGNETSVVNKEQNTTKKRTFDNKNRLTELTDRGGSQTWTYPSDSDKLKTFSWTHGDQKGTNQFTYNKLDQMIEMKDSTSSYSFDYDENGNVQTFITGNGGGTSFSYDERNLVSSLHIGDKNGGSILTESYEYDANGNRTTINSSASGKVKYEYGKLNQLVKETHEDGTVIEYTYDGFGNRKTVTTVKDGSSKTVNASFNIMNQLTKVNDESISYDKNGNRTSDGKFTYTWDAEDNLTAVTKKGEDKPFATYKYDEKGNRIQKTVNGKVTNYFYDGDSLNVLYETDADNNVTKSYTYGDSGQLLSYTENGKKYFYHYNAHGDVIAISDSTGKTVAKYQYDAWGNPTKTEASDEVKDNRYRYAGYQYDEETGLYYLMARYYEPRNGVFLSLDPDPGSDGDSLDQNGYTYGNNNPVMNVDPDGHWVWFVVNAGFAVYDGYKAYKSGKGWKGVAVAAASGFVGGGKLKLTKKIGKWATSRHWYKGTFKTKRKSLDYHHNKHIVRNGKSYSKKRYTKVARAFYRSNKHLREKVILATGKKGYRIKNGKRTGYYTRSGKVVTFVNNKWKKKKKR", "sequence_length": 2347, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "35d654066eb67e23f938a5f070e4e14f7738f41ca58dfb57a713d86039f10efa", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/D4G3R4.json", "taxon_id": "645657", "uniprot_accession": "D4G3R4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus sp", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm96-pf24517.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24517", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm96-pf24517.yaml" } ], "pfam_ids": [ "PF01522", "PF24517" ], "protein_name": "Gellan lyase", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRFSWKKLVSAALVMALLVGIVYPAASGRGAVASAASGTTVELVPTDDAFTSAVAKDANANGTWMQLKGSIGGQRYIYMKFDLTALAGVEADRIENAKVWLKKMGTNGTAMTVGLRAVDDTSWSESTLTWNNAPVYGSQVLSQQSVLSTPDVYYPFDLDEYLKTQLAAGKSKLAIAFVPISTLNENMEFYARESTANTPKLVVELKDEPPAPTGLMQLVQSFGGHNKGHLRVVEFDATPASTTGNGTVGITADGAAPAAAADFPIALRFGTDGTIKAANAAGFESKTPVNYTAGQKYHVKAMINLSLGTYDLWLTPPNAGQPVLLAADYAFAASAPALNDIGGVHATADAQSTDVPAVANARLIADHFVSKAPFKDEQGQSLAIRLESDNSLANRSYAIKFDMNLTGNPLETDALISYADRSVTLNGFPDLAYIVRSNFGNFDVRNDNVYASSHPSTAQSNRTYQVEVRINPASGTGQPTRTYDVWIAPEGEQPVQLADQFKARNYANTGYALNNIGQAFVYSQADGLLSIDNHVVQDGQRLDEALARVNAASGEAAMTAALESNALGLPMERYRLMDAAKRAQVAQDVLAGRPAEGYAHALSVQAVFVSAVANRLDTENPTAPANVQVAISNTMQAHVSWTASSDDTGILYYKVFRDGALVGTVTNATSFVDNGLAPATEYTYVVKAYDLVLKEAVSQPATATSPGEQAQVRIPFSAEAIATAFGQPLLDYNLETHSGTLKWVMEWREEYEKSANALKLLTLLSASAPDYIGPDGVTTASAKALQHLRSVTAGGNEPGFAGNGLSGQGYMPLLSAIVMAKKKAPAIWNALTAAEKEKLDLMILAGLYGAKFAYDDENDNKTGIDATGNFDKEWNPNHRSGIAGAIMAMYYFEDAQWLNDQMRSFNYDDWLARLTAAGLTNVRTIYQNSGKTLTEREIRKDAAGDGFVYKGHPLSQPGKIMAEFVNYTFSHPVSPVGGFDSGIGKYRGYIVDGQDDLPNLGADSMGFEFDTLDANGKRSSLVYVFMGWKPNVDAITPVLLLDNIDSGLTSAETRDVVSRLSIGTTDMLYKNEHGYMTYAKGVNEGVKSLNGPILTINEEIWNRILNNPAAPMEAVNQASSAGQMRTALEASALGMILYGYGALSETGKNAVAQHVLDARPAAGYANKAAAQNELYEGVRLQALLALSQAQTAEQMRSALESRALGLYKPKYETASQDKKQFVAQYLLDNKPADGFLTKTEVREQVESALEPQGNQLRNLPPLASGEKRINLADYDHWPQQHGDAEVALWADDKTGAFSLTIDDNFENEHDTWRSLAQQYGFKFSWFVITSLIKDPNKWRTLAAEGHEIGSHTVTHEDKGSTLDPAHLHSEYADSQALLNTIEGVRATTLAYPFGSGREDIAAEYYIAARGTVGLPNPADSINYMNTQSLSVRPGSLELTNQAANGNSVEAMVKTLVDPNHKVWSASYYRGWSNMLVHSLNESGKTPSDGVTRTSRDLTQYLLTLLDTYRDQIWVGRYGDIVRYSQQRDTAHIVVTRKDDRKITFNLTDRMDDTLFDYPLTVKVRVDDAWSDIGATQAGEPIPFVETIRDGKRYLLVKAVPDKGSVSIVPDAASPLNVVNGAVTSEQMLSAIAAPGLGLDLGEFNALGAGKKRMVGSRLLEVRPADGYADAAALQDALDAAVEEANNAPSLSENASLSDLKVNGVTIAGFAPETYAYDIMLPEGTTALPVVSFKVADTGKATAVLQNAPALPGTAKVTVTAEDNWTVATYTLRFQVRISALQRVNTAPDASAMRTAIENAALGLVLAAYNGLTSEQKNSVAASVLTHRPATGYADVQAVQAELNAALPKINAPLLAHAIVDQLNPDTVSTANWTNLYGGTSGRKGGVYMKFNIASLAGLEADAIGDAKVQFFTTREGTVIGYAAPSSWEAPLTWNTQPLADLKNSNMAALAEIGRTAVQATGANYEMNITQYVKDAAAADKTELSLVLLGSNNTNITMQKIPTAFALSVTLATYGEPNPEPSPLAAVNEAGDAAAMQGAIAAVELDLNLTAYNGLTAAQRIDVAQALLDNRPAAGYAHALAVQVALDAAVAAAQPANQAPGGTLAASAEQLQPGQQLELTVGVSDASRFTGADILVHYDPQALTFATELYEGVRMLKAEAIASLQANYQVAAAMAEQPGTIKILLFTAGAGQPLSGTLPLFKLRASVKDDAQTGVSTAVSLSDFELTFEGEDSVWPDTTRAAVSLQIAAHPVEADKTALIAKIAHAQALLTGATVGANPGQYPQAAYDALADAIGLAEEKRDLTGVSQAAVDEAVASLGTAEQQFLNAVIPGVPADLTALNAAIAKAQRLHDNGPYGEKIGQYPQSAKVPLKSALDAAKAVGGSGASSQESVNAAAASLNGAIQTFERSLVTLVGGGATKVGIRDLSIVAKYYGVTSSDPNWGKVSAAAIDGGNEITIEVLAAVARMILADWAAGQ", "sequence_length": 2475, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "24289b6453da55e419dc38110124194d73f43ac09af4b3e37833c9c5b8d5884c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O82833.json", "taxon_id": "1409", "uniprot_accession": "O82833", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm-4-9-pf02018.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF02018", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm-4-9-pf02018.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/cbm96-pf24517.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24517", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/cbm96-pf24517.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6531-pf20148.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20148", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6531-pf20148.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/rhs-repeat-pf05593.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF05593", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/rhs-repeat-pf05593.yaml" } ], "pfam_ids": [ "PF02018", "PF05593", "PF20148", "PF24517", "PF25023" ], "protein_name": "tRNA nuclease WapA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKRKRRNFKRFIAAFLVLALMISLVPADVLAKSTEEENGNRIAADDPEETLQKEQTEEAVPFDPKDINKEGEITSERTENTKLYYEGDGVYKQEVYLDPIHTKETPDADWEDISPELKESTSKQVETENAILNSDFQKQMKNGLYATFEHNDHKVTYSLAEAKGPNKTSLTPKDTSADYKTDSNEIVYPDVFPNIDLQTFTFNENIKEDLVLHQYNGYNTFTFQLKTDLQAKEQEDGSIDFSDEKGKVVFSVPKPFMTDSKLDELSGEVERSDKVSYKLEKNEEGYLLHLTADENWLKDPERVYPVSIDPSTSLSVSSDTFVMSAYPTTNYSASSQKWDANLKAYVLKTGYYDKTTGTNYAFMKFNNLKPIQNMTVTKATLKTYVAHSYYGTKATGLWLDTVNSNYDNAKVTWNTKPASKNIGKADVHKGQWASYDVTAAVKSWNSGGANYGFKLHTNGNGKEYWKKLISSANSANKPYIEVTYTIPKGNTPTIKAYHNGDSTGYFDISWKKVEGAKGYKVWIYNGKEYQAISAGNVTSWSTKGKKIWPTSAEIASKRYKLHLDGKDGAELALDPSPVYKNSGGSYATSKNYWIGVSAIFDQGEGAMSAPAKPVIPNVGKAQAPSAKGYNNGNATGYFDLSWKAVSGATGYKVQVFNGKGFETLDLGNQTSWTTKGKKIWPTSAEIKAGKYALHLKDGSGAELPINPGPTYKNAGGDGAKRNYSFKIIAYNKDGEAIASPAATPALPDIARPKNVTGYLYTNTKSSQTGYVNLIWEKVQNAKGYKVNIYNGKEYQSFDVGDADHWTTQNKNIWPTSEEIKAGSYKLHTDGKGGELALDPSPVYNNANGNYKGKKNYSFTLVAYDANGETIPTAPFNPTFHEGAEFLGTEEYWSIIDIPSGQLNGATGNVIVNEEDLSIDGRGPGLGLSRTYNSLDSSDHLFGQGWYADAETSVISTDGGAMYIDEDATTHRFTKKADGTYQPPTGVYLELTETADQFILKTKDQTNAYFNKKGGKLQKVVDGHNNATVYTYNDKNQLTAITDASGRKLTFTYDENGHVTSITGPKNKKVTYSYENDLLKKVTDTDGTVTSYDYDSEGRLVKQYSANSTEAKPVFTEYQYSGHRLEKAINAKKETYVYSYDADKKTLLMTQPNGRKVQYGYNEAGNPIQVIDDAEGLKITTNTKYEGNNVVEDVDPNDVGTGKATESYQYDKDGNVTSVKDAYGTETYEYNKNNDVTKMKDTEGNVTDIAYDGLDAVSETDQSGKSSSAAVYDKYGNQIQSSKDLSASTNILKDGSFEAQKSGWNLTASKDSGKISVIADKSGVLSGSKALEVLSQSTSAGTDHGYSSATQTVELEPNTTYTLSGKIKTDLAKSRAYFNIDLRDKDQKRIQWIHNEYSALAGKNDWTKRQITFTTPANAGKAVVYMEVDHKDKDGKGKAWFDEVQLEKGEVSSSYNPVQNSSFTSATENWNVSGASVDSEEGFNDDVSLKAARTSASQAGSVTKQTVVLGQSANDKPVYLTLTGMSKASSVKFTDEKDYSLQANVTYADGSTGIYNAKFPSGTQEWNRAAVVIPKTKPINKVDISILFQKSATGTVWFDDIRLIEGSLLTKSTYDSNGNYVTKEEDELGYATSTDYDETGKKTSETDAKGEKTTYTYDQADQLTNMTLSNGTSILHSYDKEGNEVSKTIRAGADQTYKFEYDVMGKLVKTTDPLGNVLASEYDANSNLTKTISPNGNEVSLSYDGTDRVKSKSYNGTEKYIFTYDKNGNETSVVNKEQNTTKKRTFDNKNRLTELTDRGGSQTWTYPSDSDKLKTFSWIHGDQKGTNQFTYNKLDQMIEMKDSTSSYSFDYDENGNVQTFITGNGGGTSFSYDERNLVSSLHIGDKNGGDILTESYEYDANGNRTTINSSASGKVQYEYGKLNQLVKETHEDGTVIEYTYDGFGNRKTVTTIKDGSSKTVNASFNIMNQLTKVNDESISYDKNGNRTSDGKFTYTWDAEDNLTAVTKKGEDKPFATYKYDEKGNRIQKTVNGKVTNYFYDGDSLNVLYETDADNNVTKSYTYGDSGQLLSYTENGKKYFYHYNAHGDIIAISDSTGKTVAKYQYDAWGNPTKTEASDEVKDNRYRYAGYQYDEETGLYYLMARYYEPRNGVFLSLDPDPGSDGDSLDQNGYAYGNNNPVMNVDPDGHWVWLVVNAGFAAYDGYKAYKSGKGWKGAAWAAASNFGPGKIFKGASRAYKFTKKAVKITGHTRHGLNQSIGRNGGRGVNLRAKLNAVRSPKKVIKQPNGATKYVGKKATVVLNKRGKVITAYGSSRAKGSKHVFHTHGKGNKSKRRR", "sequence_length": 2334, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6daf79be870a6882fc20be002833f169077825c5caf6214516788f4d07b83d8d", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q07833.json", "taxon_id": "224308", "uniprot_accession": "Q07833", "uniprot_release": "2026_03" } ], "pfam_id": "PF24517", "short_name": "CBM96", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24523", "short_name": "DUF7595", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24524", "short_name": "DUF7596", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24530", "short_name": "DUF7597", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24535", "short_name": "DUF7598", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24538", "short_name": "DUF7599", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24539", "short_name": "DUF7600", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus pyogenes serotype M1", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7601-pf24547.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24547", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7601-pf24547.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/fcta-pf12892.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12892", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/fcta-pf12892.yaml" } ], "pfam_ids": [ "PF12892", "PF24547" ], "protein_name": "Pilin", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKLRHLLLTGAALTSFAATTVHGETVVNGAKLTVTKNLDLVNSNALIPNTDFTFKIEPDTTVNEDGNKFKGVALNTPMTKVTYTNSDKGGSNTKTAEFDFSEVTFEKPGVYYYKVTEEKIDKVPGVSYDTTSYTVQVHVLWNEEQQKPVATYIVGYKEGSKVPIQFKNSLDSTTLTVKKKVSGTGGDRSKDFNFGLTLKANQYYKASEKVMIEKTTKGGQAPVQTEASIDQLYHFTLKDGESIKVTNLPVGVDYVVTEDDYKSEKYTTNVEVSPQDGAVKNIAGNSTEQETSTDKDMTITFTNKKDFEVPTGVAMTVAPYIALGIVAVGGALYFVKKKNA", "sequence_length": 340, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8279e2fcdae00baa6aac0c357efc99c05b2b435393d87047397c1216cb93344e", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9A1S2.json", "taxon_id": "301447", "uniprot_accession": "Q9A1S2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptococcus pyogenes", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7601-pf24547.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24547", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7601-pf24547.yaml" } ], "pfam_ids": [ "PF08341", "PF17802", "PF24547" ], "protein_name": "Pilus tip adhesin Cpa", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "GFSIRAFGAEEQSVPNKQSSVQDYPWYGYDSYSKGYPDYSPLKTYHNLKVNLDGSKEYQAYCFNLTKHFPSKSDSVRSQWYKKLEGTNENFIKLADKPRIEDGQLQQNILRILYNGYPNDRNGIMKGIDPLNAILVTQNAIWYYTDSSYISDTSKAFQQEETDLKLDSQQLQLMRNALKRLINPKEVESLPNQVPANYQLSIFQSSDKTFQNLLSAEYVPDTPPKPGEEPPAKTEKTSVIIRKYAEGDYSKLLEGATLKLAQIEGSGFQEKIFDSNKSGEKVELPNGTYVLSELKPPQGYGVATPITFKVAAEKVLIKNKEGQFVENQNKEIAEPYSVTAFNDFEEIGYLSDFNNYGKFYYAKNTNGTNQVVYCFNADLHSPPDSYDHGANIDPDVSESKEIKYTHVSGYDLYKYAVTPRDKDADLFLKHIKKILDKGYKKKGDTYKTLTEAQFRAATQLAIYYYTDSADLTTLKTYNDNKGYHGFDKLDDATLAVVHELITYAEDVTLPMTQNLDFFVPNSSRYQALIGTQYHPNELIDVISMEDKQAPIIPITHKLTISKTVTGTIADKKKEFNFEIHLKSSDGQAISGTYPTNSGELTVTDGKATFTLKDGESLIVEGLPSGYSYEITETGASDYEVSVNGKNAPDGKATKASVKEDETVAFENRKDLVPPTGLTTD", "sequence_length": 680, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "926967d5a60067e41aee6dfe8f2bdad74a572d55e9ef883cc3ea45fd22b94b60", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/S5FV19.json", "taxon_id": "1314", "uniprot_accession": "S5FV19", "uniprot_release": "2026_03" } ], "pfam_id": "PF24547", "short_name": "DUF7601", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24549", "short_name": "DUF7602", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24554", "short_name": "DUF7603", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24558", "short_name": "DUF7604", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24564", "short_name": "DUF7605", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24574", "short_name": "Nm-ACP", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24580", "short_name": "DUF7607", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24581", "short_name": "DUF7608", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24582", "short_name": "DUF7609", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24583", "short_name": "DUF7610", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24586", "short_name": "DUF7611", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24587", "short_name": "DUF7612", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24588", "short_name": "DUF7613", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24589", "short_name": "DUF7614", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24590", "short_name": "DUF7615", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24592", "short_name": "DUF7616", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24593", "short_name": "DUF7617", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24594", "short_name": "DUF7618", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24595", "short_name": "DUF7619", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24596", "short_name": "DUF7620", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24599", "short_name": "DUF7621", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24602", "short_name": "DUF7622", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Trypanosoma brucei gambiense", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7623-pf24610.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24610", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7623-pf24610.yaml" } ], "pfam_ids": [ "PF24610" ], "protein_name": "Antigen GM6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "KLKASDSRSFLDPMPEGVPLSELELDKDEKFSTMEEERRKLIAEDREGNATRIAELEVAMNEHSHELAKLKASDSRSFLDPMPEGVPLSELELDKDEKFSTMEEERRKLIAEDREGNAARIAELEVAMNEHSHELAKLKASDSRSFQS", "sequence_length": 148, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a64f2908399c4aecbd0fa131c39eb5f3ac5402c09ed6fd6fa78772257770c798", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q26755.json", "taxon_id": "31285", "uniprot_accession": "Q26755", "uniprot_release": "2026_03" } ], "pfam_id": "PF24610", "short_name": "DUF7623", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24616", "short_name": "DUF7624", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24620", "short_name": "DUF7625", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24625", "short_name": "DUF7626", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7627-ipr056044.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056044", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf7627-ipr056044.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf7627-pf24628.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24628", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf7627-pf24628.yaml" } ], "pfam_ids": [ "PF24628" ], "protein_name": "Uncharacterized protein B0303.14", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRLAGRVVFPGEAEPQSSSTNSRAPESSSSSQETRQQNLANRFKPSNNYRSNRNQVEDGETTNSNRGKPRGKGPIRYQGNYSDRFVGRQEEAPRAEKSERSERPQRSEKPQDQNQREQVKPQRKQTKRVENVVASEELLELEDIIDQISDLNVRNDRSAAQIKRNILGSHDLIDTMDEDDWQKVCESMIKTALEQGEPEFIADLMVALFSNKLFAAVMSDELMKYVTKYIMEDDEMPIPSLLSAILCAHWPRQLAKAFDNINPILYTIVCLIKGWIEVVREDTERYYKEEKKPKYQVAREDSFEEPTPEPSKEEEEKIIEEPEMVNRCAVGLSDLCDTAQRQLWVNWMTVTDEIYQCIKPSITHNPNITGSVKGRLLDTFLQMNQWTKNRTASVKHAVTQTVGTSN", "sequence_length": 407, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b30a1f7051568567a7bec40a8e8fa960a7222903392b7e536eb39db6f45c3db9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P34263.json", "taxon_id": "6239", "uniprot_accession": "P34263", "uniprot_release": "2026_03" } ], "pfam_id": "PF24628", "short_name": "DUF7627", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24631", "short_name": "DUF7628", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24632", "short_name": "DUF7629", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Toxoplasma gondii", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7630-pf24633.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24633", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7630-pf24633.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7631-pf24634.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24634", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7631-pf24634.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/mar-sialic-bdg-pf10564.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10564", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/mar-sialic-bdg-pf10564.yaml" } ], "pfam_ids": [ "PF00051", "PF07699", "PF10564", "PF24633", "PF24634" ], "protein_name": "Cysteine repeat modular protein A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSASTSMSRVHPSGVYRRPLLPSGGPRSTSERDERVDLSGCPRHVERGTCLSLPPSFSAAAVDACLDSRCQVLSTAASGGCMQSATEHLRVSTRPCVASTHANSGTFAAVRSRVQRGQALSLFLLFSSSPLLLLLLLHQFFISSLHTEAVLGSPLLPALAVEVSSPEALKTTFEEREADSHRGSRDGEKVSGSRDIRFEEQEIRSRDGKETIFPSPHGDQPSGAGAWTSEGRRKKRSFYRDHIERGTSHPAFSFFSDPTSRFVLDPHLPASHASTCERGASCSPVDAIQPVFVSPSHSGNESEKAERARLEQSTPAKLWRPPKVFAESFASERRQTDTGLVSLHGDVAFRSPGFTVSIKRQAQKEWEREQLREKLLAEGGDLSMLEVQDDNDSGEIYLYSSMQLALDRQCVSQAEAMKTDWSYVRLHASNFYCFSKDDLNFETTGQNCVDSCSQTVACAGVPTTRAIRNITDTAKLPDNILGRNWPLKHCVTSRLQDALNEICGSPESIYRVVNDVAGCVPVESIDWTEASPVCVDDCNKVVNCYGQVTNADQMVPFTSDQRAMLETRKKSTCLCDETLEQGKLYRGCQTRTRTGRECQRWDVDSPHEHFELREAHNYCRNVNAEAEIWCYTTDPHVRFDFCDPLGVSERFVQPGETVDIVISGVDLSPHYSLRIYKGSETNVCGANNGQRAPAAFKDWGVERHFLPKYSVTDGTISLLTWPDLGIEPTATGKIALCACNFFGFLASNWNGATPCSQDSHFNVQLGVLHVIGPVHASGGEVQMISGVPHEFTVRGAGLRTVDTLVAVGDRTGVMCTSPNFFQMQLELLRGVGDGAFAVFTKGIATGENQYVKTGFKSVTSDGLLATTGDLTLLATGHYCLCWQGTNNGQRAYGLVDKLVVTGVDLSLTYRSVYSPSAGSASQKLFSTFIHTYRLSKDFADDALTVRTATKTPCEGTVVAQSRKIEKEYRSTTQMATEKLLYKAKYMSVKNLPESSTTYSEMLHVCLKSPNGEVLQFLGESSISEYYSYPFHDFVLPETLHVRTPSSVYSYTVSEFSNLGLHWGTVERDGEVVIGNFLDFFTANPFSKVLHFWLSHSGNVITAWAFSASDPSPTLMATFKSEFPVGMALHTTANFVHLYLLKGQTPATLFVMDVTVPSTGLSPEALIHALDPGQAGLVEPSNIVLIYEGEEDESDPVVVLVDSGTGYIHLFDHDLQEVGKSNGQEALAQPLVKPTDLHCLRKTEGSGTVSSVWDCFATDVGLPRVIYFSIDASTKEFRFLTTYSGEGTKDGVNTNLRGPISVVAHYFSGKTLIYVAEAASAYPLLLTKVDEEETLHYYAYLSQNSVGSSSTVGRLSLLHFSDDNSSLEHVSLATFRDAWRGAEVQIVSLDTTATVPNFRYHPHEWYTVGDTHSLEPSVIGLGTLKGVRKFALSTEIPNAAYVHSIASVDPNTGVVKLELTHIQRASVEIQVIAQGMVSQMTTTFKFNVACKDGYYYSQGMCVRCAAGTYNSVNLIKADPASSWAKCRKCGENHTTVAEGSISEDQCQCQLGFHIPDESEEGAKCEPCPAGMWKDTVANTGCIGSCPAHSSTTVVGAKSAEERRCECDAGYYFVGESVLNQECVLAEKGYFSEGGFEAERVPCPQHSTTNPNDDPSFVSRNLEACVCEKGYTPASLQSLEDSSSPEWKLMEWLKIHPKHTQLAKSQVCVPCGRGFYKDSIGAHACTPCPLNSFAATSVATSAAECELCQPGYYQTGNSDVPCGECPEGHFCVGSEPTVSSLSQYAGAKIMCPDNTATVPPNAQNDHPYKCMCQEGFEFSKVDSVTPTVICQPARVGDYKGVVSNTPGQRCPSGSSTQSTGSVSLEDCICTPGYFFSEASGECTECPVGFYCPGGRDSLTASHTMPVQCPAETNTRGTMSATSAECVCDKGYYRFSSQVNSGDIVCRPCPANSFKDWVGNDVCKACSENSGTEQTGANSASQCLCSRGFYYDISQAECVACSNPLKYCPGGEVECEEEEDNCVNGKKPAEPQACPPHTRITAGYDTPWSLDDCKCDPGFAYESGSAADGEKRCEPCSAGSYKSSVQDGPCNGLCGTSSTSFPGAQTQSQCFCEEGTYFAADACHTCPIGAFCGGGLLEEAEAKLREDSSFTGITSADHVKPFAEAGYFLNKLKEELESPNDWQFTECPIQNACLSHGVCSETMTEYLCSECRRGYTNTFSKGEICTSCPSMVWNIVCLMGYYLATLLFNIVMTYMNVAAGFNRRSIHSIVIKIASNYLTGISVLSVIDFSTIAFPSWITDLTATVTETVSAKHSTRLMSVDCLLRDNFDLSFSESFFYTMVFYALIPIALPIVATIIMSIIVYRVRAWYHNSTQRKLELLKQTMQYGLYSLAQQLKEKYEEDRVFMIFRYIALPGESIFRRAAKFMEDMIPIYVTVLFFVYSSTTRNMLSLLDCTYIDFGRAHQAKYFLRAAMSVECTDILSGPYFKFFAVGITGLLVWSIGIPLSCFLVLYVNRKTLNSRETRLKYGFLHNGFVKKYWYWEMVVFARKFLVIVVSSVALIPSADKNGSRVWLAVVIAVIFLIIHLVTQPFDKRSYLTLDKLENHSMTIWTITLIVLAMMIGSDFSGSVNMALLLFVAVLSCMFILEVGVSLMFAYFDNVRTQQTFFRVPVIGYVFRFFARLSEKRRAREPIVVFDTENEVIQLVAAKRQTWTLFRALRKNINLAERNYFIKVMSESLGFAVVHMKLDVIPGSFLEFALRLGLAFHRVEEVSQQNKKSLQAIADGDLSQLADWSNNEHKRKDLSESAKTSQKKLATELDTFYTDMEEKFAAKDETPTAEEKTEEQDERLHDLEGELVSDTELEQMKKTMTEAEEAEEDEDRGDDAAYLRNLQDFTNDITGEDEETMYLFDQDMMTRGIALSELYLALLKLQMQDSNTINSQFDAFRLRKQIQADEFSEALQKRNRKLKVMREALESLVLSSGTSLAELGMTEEAFQSKQAELQKLNAEIEKLKTRLQELKDNPDSYREGGDVEREEDWVDEDRAAEIEKIQEENARRKLEKEEREEADREICMTGEDMENAGWFGEDDTATIDDSSDAPLPEGTFRLIGQDAETWDEFGYSSSKGNYEAAPDDGL", "sequence_length": 3133, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7c979db3c306bbc5452dc911f8b71851ad52f8d46992fd3788f0618aba38527b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A7J6K144.json", "taxon_id": "5811", "uniprot_accession": "A0A7J6K144", "uniprot_release": "2026_03" } ], "pfam_id": "PF24633", "short_name": "DUF7630", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Toxoplasma gondii", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7630-pf24633.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24633", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7630-pf24633.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7631-pf24634.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24634", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7631-pf24634.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/mar-sialic-bdg-pf10564.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF10564", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/mar-sialic-bdg-pf10564.yaml" } ], "pfam_ids": [ "PF00051", "PF07699", "PF10564", "PF24633", "PF24634" ], "protein_name": "Cysteine repeat modular protein A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSASTSMSRVHPSGVYRRPLLPSGGPRSTSERDERVDLSGCPRHVERGTCLSLPPSFSAAAVDACLDSRCQVLSTAASGGCMQSATEHLRVSTRPCVASTHANSGTFAAVRSRVQRGQALSLFLLFSSSPLLLLLLLHQFFISSLHTEAVLGSPLLPALAVEVSSPEALKTTFEEREADSHRGSRDGEKVSGSRDIRFEEQEIRSRDGKETIFPSPHGDQPSGAGAWTSEGRRKKRSFYRDHIERGTSHPAFSFFSDPTSRFVLDPHLPASHASTCERGASCSPVDAIQPVFVSPSHSGNESEKAERARLEQSTPAKLWRPPKVFAESFASERRQTDTGLVSLHGDVAFRSPGFTVSIKRQAQKEWEREQLREKLLAEGGDLSMLEVQDDNDSGEIYLYSSMQLALDRQCVSQAEAMKTDWSYVRLHASNFYCFSKDDLNFETTGQNCVDSCSQTVACAGVPTTRAIRNITDTAKLPDNILGRNWPLKHCVTSRLQDALNEICGSPESIYRVVNDVAGCVPVESIDWTEASPVCVDDCNKVVNCYGQVTNADQMVPFTSDQRAMLETRKKSTCLCDETLEQGKLYRGCQTRTRTGRECQRWDVDSPHEHFELREAHNYCRNVNAEAEIWCYTTDPHVRFDFCDPLGVSERFVQPGETVDIVISGVDLSPHYSLRIYKGSETNVCGANNGQRAPAAFKDWGVERHFLPKYSVTDGTISLLTWPDLGIEPTATGKIALCACNFFGFLASNWNGATPCSQDSHFNVQLGVLHVIGPVHASGGEVQMISGVPHEFTVRGAGLRTVDTLVAVGDRTGVMCTSPNFFQMQLELLRGVGDGAFAVFTKGIATGENQYVKTGFKSVTSDGLLATTGDLTLLATGHYCLCWQGTNNGQRAYGLVDKLVVTGVDLSLTYRSVYSPSAGSASQKLFSTFIHTYRLSKDFADDALTVRTATKTPCEGTVVAQSRKIEKEYRSTTQMATEKLLYKAKYMSVKNLPESSTTYSEMLHVCLKSPNGEVLQFLGESSISEYYSYPFHDFVLPETLHVRTPSSVYSYTVSEFSNLGLHWGTVERDGEVVIGNFLDFFTANPFSKVLHFWLSHSGNVITAWAFSASDPSPTLMATFKSEFPVGMALHTTANFVHLYLLKGQTPATLFVMDVTVPSTGLSPEALIHALDPGQAGLVEPSNIVLIYEGEEDESDPVVVLVDSGTGYIHLFDHDLQEVGKSNGQEALAQPLVKPTDLHCLRKTEGSGTVSSVWDCFATDVGLPRVIYFSIDASTKEFRFLTTYSGEGTKDGVNTNLRGPISVVAHYFSGKTLIYVAEAASAYPLLLTKVDEEETLHYYAYLSQNSVGSSSTVGRLSLLHFSDDNSSLEHVSLATFRDAWRGAEVQIVSLDTTATVPNFRYHPHEWYTVGDTHSLEPSVIGLGTLKGVRKFALSTEIPNAAYVHSIASVDPNTGVVKLELTHIQRASVEIQVIAQGMVSQMTTTFKFNVACKDGYYYSQGMCVRCAAGTYNSVNLIKADPASSWAKCRKCGENHTTVAEGSISEDQCQCQLGFHIPDESEEGAKCEPCPAGMWKDTVANTGCIGSCPAHSSTTVVGAKSAEERRCECDAGYYFVGESVLNQECVLAEKGYFSEGGFEAERVPCPQHSTTNPNDDPSFVSRNLEACVCEKGYTPASLQSLEDSSSPEWKLMEWLKIHPKHTQLAKSQVCVPCGRGFYKDSIGAHACTPCPLNSFAATSVATSAAECELCQPGYYQTGNSDVPCGECPEGHFCVGSEPTVSSLSQYAGAKIMCPDNTATVPPNAQNDHPYKCMCQEGFEFSKVDSVTPTVICQPARVGDYKGVVSNTPGQRCPSGSSTQSTGSVSLEDCICTPGYFFSEASGECTECPVGFYCPGGRDSLTASHTMPVQCPAETNTRGTMSATSAECVCDKGYYRFSSQVNSGDIVCRPCPANSFKDWVGNDVCKACSENSGTEQTGANSASQCLCSRGFYYDISQAECVACSNPLKYCPGGEVECEEEEDNCVNGKKPAEPQACPPHTRITAGYDTPWSLDDCKCDPGFAYESGSAADGEKRCEPCSAGSYKSSVQDGPCNGLCGTSSTSFPGAQTQSQCFCEEGTYFAADACHTCPIGAFCGGGLLEEAEAKLREDSSFTGITSADHVKPFAEAGYFLNKLKEELESPNDWQFTECPIQNACLSHGVCSETMTEYLCSECRRGYTNTFSKGEICTSCPSMVWNIVCLMGYYLATLLFNIVMTYMNVAAGFNRRSIHSIVIKIASNYLTGISVLSVIDFSTIAFPSWITDLTATVTETVSAKHSTRLMSVDCLLRDNFDLSFSESFFYTMVFYALIPIALPIVATIIMSIIVYRVRAWYHNSTQRKLELLKQTMQYGLYSLAQQLKEKYEEDRVFMIFRYIALPGESIFRRAAKFMEDMIPIYVTVLFFVYSSTTRNMLSLLDCTYIDFGRAHQAKYFLRAAMSVECTDILSGPYFKFFAVGITGLLVWSIGIPLSCFLVLYVNRKTLNSRETRLKYGFLHNGFVKKYWYWEMVVFARKFLVIVVSSVALIPSADKNGSRVWLAVVIAVIFLIIHLVTQPFDKRSYLTLDKLENHSMTIWTITLIVLAMMIGSDFSGSVNMALLLFVAVLSCMFILEVGVSLMFAYFDNVRTQQTFFRVPVIGYVFRFFARLSEKRRAREPIVVFDTENEVIQLVAAKRQTWTLFRALRKNINLAERNYFIKVMSESLGFAVVHMKLDVIPGSFLEFALRLGLAFHRVEEVSQQNKKSLQAIADGDLSQLADWSNNEHKRKDLSESAKTSQKKLATELDTFYTDMEEKFAAKDETPTAEEKTEEQDERLHDLEGELVSDTELEQMKKTMTEAEEAEEDEDRGDDAAYLRNLQDFTNDITGEDEETMYLFDQDMMTRGIALSELYLALLKLQMQDSNTINSQFDAFRLRKQIQADEFSEALQKRNRKLKVMREALESLVLSSGTSLAELGMTEEAFQSKQAELQKLNAEIEKLKTRLQELKDNPDSYREGGDVEREEDWVDEDRAAEIEKIQEENARRKLEKEEREEADREICMTGEDMENAGWFGEDDTATIDDSSDAPLPEGTFRLIGQDAETWDEFGYSSSKGNYEAAPDDGL", "sequence_length": 3133, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7c979db3c306bbc5452dc911f8b71851ad52f8d46992fd3788f0618aba38527b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A7J6K144.json", "taxon_id": "5811", "uniprot_accession": "A0A7J6K144", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Toxoplasma gondii", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7631-pf24634.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24634", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7631-pf24634.yaml" } ], "pfam_ids": [ "PF07699", "PF24634" ], "protein_name": "Cysteine repeat modular protein B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTYCRKDKSTIELTAATAAPVSCEGAVTENFRTSRRSKEDPLVHLHSTLHGRSPLRQTCVNMDRVSPFCGTEGCVGSCAGSYCMGYGQCQCDINPHRARGERRTDRHGCTTGVHAHWTGAARRHASSLHPRGHRCQGKRRPCPLSLFPGSCRPCDSFGYPRSSMSSLASDANNSSSAADIVHDFCTKICDPVSVSSFAEVGGSPRSSDASSRPLGKALRKSRLVGFFLVPVFVVFFVLSSDATSSTRGVGVLSARADREEKSSVSSSSRASSSPGASALLVQTTYAENPYRDTKAAGYTGRSSRRSARARRRRAADGGEGKGFLGDMLNKSMLETRSRSTAADPYQQFTSCGSGMFVSTEVGEDGGVEKTAKVDESMNCWNVCAFVEDLVYDQCSSTPSPTECITRALKSHSLVPDGYKGNCRYSSPQDVSPTFWDAEPDSEFCLDKGMNAWLKSDSWDDFVSKKPPGCIYPKQDPSIPASTPTAYVNDATSGLGEALASLVPVEYYVVVRDAEEAMNNPIEYGAYVASSIVPREYWDKVSSDAKDGWHVARAFSVPDKPAEFAALTTAADGSSTSANICLYAAVETANHSDGTSKTFVNYGMIAQTETCEGKIGVLPVADIRGSGILDSSAQEISRKTGFNLCVARRWVTRHLSENGIKSTAQVPMFQVALDAPCASFVSAYAYTDEVPSHWGQWEQYFVAKTYPLTRGIYGIPDAARCPWSYAVQYGLKCYTSIEYDFYMYLGSFAEGQIACRRLVSNIQVPSDFSRLAVMQTDDDEKIMTFLSEPGTFTWVGLFQGSQALVPVKTGFMDSGRVSEQTCPAEVLATGQFSHRNSEIEEKCLQAGANISTPGWKTTWGGLDGNSEIAPWDIKWCSGHPQTERNNRYVDCAGLRVNDNMESCIESAPCDEANPVFCTYPVDYGPYLETTTPQGQSSTGPRLPPYIGCLLRKTCVIQFTLTRPDTSSDTTLPGAHGTIWGVPSEGGFLAVKANCMAVNGPMIGPYRVTSTVNLASLAAFRSARPGLYELCYCNTNSPAVSVVTTGATPDTQCMHQSSFNQLIASLGLTKYNENVGFSQAVQLPTASATVSTKSVLALVGRDSWGGVPTVYCGWQSTGRSCPFDVRVTSNGSWKLRPFTTKLTFYPVDSSVLVTDLCTSEESPAIVVSVTIQSGDTGSAILDAENATSLFYSVCEGKKFLGYVVLKEIGNAVEAKISLENVVLSDQTNVNADDVTLILRGEFTDALLLRSKVVAVSVESATDSDCSTLTLASLPESSVTIVPFPTLSSGTGDLVELHFKAGPSAKKLCWMETIAMGADRDSRTFSTYLVTFPRASTVRELSVEDSRCFGPSDHPCRFRVTPEPVPSEENPINASPYLPSTFRVYVMKDGCPSSAEDSVLDEIDNSSGADPVAANAKGILLELEWESESAMQAVLQPQYFPWLQAIGSANLCWVYTRGNAETECPIGSTSCGDTFGKMYAVGPTSDVQANVVVCLPGAPEPCLTTVEGVNLNLYERITDRMAALDTCGSDTGIGLLTPWGHYAGLIGSSLSALEDGVLRSRSGPSHPSSVSQPSPSFALLGQGLSQTKASFHGSDGRSRGSKSLMWSFATDNDLTDPSSGNTPSNATSLVFQIPFASEGGSLELCFRTGESDSDDLTRFTEPVGHVVYGWRLHGATLAVEATTNPNAVFYRVTVVSGIDAAGALSSTVVYLKPVKGYPEGTTVPCDYDLDTSGDVAHQVQGPVVSSDVDDVTWDDDLGGTSSRGSSASFKIPLLHYQGMAVCWSQLVEASPAQGSHSQSPFSVRSATLVGYFAGPSLPVLAENSDVAVACALAKTTCEIAVGPGRAAVDYTGGLAITPAFLDVRVTVVLDAELLAAPCPDPSDPGYENAIRATSQTRLVLPSDVLTPERQTFLVDSNARELLKTNGKAGICYRVDNCATESDAPTSDCTKFLGLALWVGPTAETPDKVTICKAQQRDCLLRIDGSNMDVVDYSAPRAAYAATCGEPGQYVTATLVQTSSTPSQETLDSDLVSNEHASWAAFAFAIQPASLWRLCWNPFDAATMQDEPAEDRFVVNRGFLVFPATPEVESERVELDSSSQTMLRLVISAMVTEAALEKVSRPDTPVTEHYVYVSPVLSHANGVAEDVVCADADEETKVQWTSVDAKTPTAFGNEDSNDAATASRIHYSITAISVEQQVCWRSVYRAEDGTVVHEERIYLSKVPAVLTPELDTSVANQVSPLLTFCSLGTEEMCLVTLKPRASSDSTPATFPPGGELYVVHEGDCPSERADPKLVNAAGDGVPTTDTTVVRLHVVTFDTTRVALGFPEDDRTWMSARKAAALCFVFGENQCPASGACVERIGMIYWRGPRVFEDTQLRVLCNDPQGCDISVTGLNLNTYDLSYSRVAALDSCGEPGGLGRLDIVRYPAGYTQDSPVEPLDDYFTSDDSFGQGSFAINNMGRGVLTCGASEAVSVTTASWGPADLQNSKVACDPVDVLEHVAAHCEGKAICVVYPHTPRDDETVRSYIGLKQEEFLRLSDPCPGTANEDLRLVGTHTCVAGTRSVTPEVAMVETTSRVAAGGANYSNPSTDAMDMVVKLPPDIAKVYELCWNPDPVITLQPARYNVKVGVAQIVPVAGLVDLISTVFERIDDANVEVVLRGILAEEVAVNTSIYLKQIPDEGAISCSNDDQENAIGKATFMSYESGDAGTTVIRYRIAAVDSEKAVCWRWTSQDFAAGGGGVQSILIGTLPGTVNPVSRAWGEMMCSLPGGTDCSIEFEPDSLLGTYPTEEEPGSGAVTGFTDYAQFANLHSHLRKGTKIGLIAGRESCPEDPQDLAYQRFTQTGIAEGDISDSEVQETTIGLPISGGKPSSLVSTMSVGLLHWLAVHKDAIVCWVNADECKTTKTPRFATCTATVGTLSWKGPIPTEWSVTAVDLVCRTGGRCRLKIPGRNMFKLDLSESPVAIVRTCGGDEGPGIAKLQQTPVLYPSQQADDGVQSGSLLQTTMSLSSNQRRAVRQLRRSCKMGSEDHADRCDTRLATGNTAMGFAAGSRRHPSFMEVLLGSRKAPSSSVDDSIEVVTTIKTGGEYAICWNPSALSTNLSDFTVNIGRVFSYGLEQIDALCYSGSYCELNFTYIGSSNPTLFVGVKAVDCSDPDLTTELGSGGVFKTTGRNTLSLSEPIPRRPQSSRVSYKLCWCDMNEVQECVGTSYSAPVGTLTVQFIEEKAVACQEAVGACSISFDASDFQGDSSGTIFLTQYSGTNADCMQPKKYVPHVSAIFGNIVVQVDQATLAATLGQHAAEQGSFAICRQMTAAIDEYTGSSNAVPEADENQVESAEPEQNAEGETPEQGAEEAGGNAAEPGAESGTQEGAVTPGVEPDGGEPVAPEVDSGGGESVAPGVDSGGGDSVAPGVDSGGGDSVAPGVDSGSGVAGTASEGVDEQSDLTTSQPEDLEAKSQTALGMVQLDDTGSDTSLQVTSSPALLGVLQFAGPASTEYQDETQVAVLGMATRIAVVTQGFDRFIDTDITADSSDIPTGVAHVRLVPAGGCGHDNGSNSVVLSLSQVIQKESDLPEKAIYSQEEILQINTGAIRKLDVCWCDLGTACKKDTDFTIPVLSVGLVAPEQDLVVKCPCGSKCPFEFQGVSEAPQHGVEPDYFVKNDGCSGAPAELPDQGHLVTVVSSVIAAEHSDDAVADVDRSPAGELETLNKQIQAFRAEVDRTSVFATGTTEGSREYAICYCAFRTGGCANDALIRIGTLTVYDVWRDKMSAVVADDVTIRPPSPPFSGIQGTLYAQAGAVTLPVSTLPDKAYQIDLSTLEGRRTPASVVDVRYCESEVTQSCDDEGAPRIDLTQIELKGPVSLSFEDECRLGFRCTIVTEVFNPTEEEKLAALASCGSSSEHDYGLSSGVRTAEDNPAKAVEVTFEWEKTLPDVGRSELDFCWCKKTNQVDCSAVDQYTLKVGTLYITGLAAGQEATCHVGSVCVAHLKGYRLVEEVVNVRVVAGECGTAGSEISGLPNGGIFVPEQVAESSAEVSLIEPFFGLAVETAAICQCPMPTQACESEADYAWEAGRYIFSGPSERVVINALSGQGVEVEIPWRGEQDTASDFFILTRDTMCSGTTSGLIDGVVDNGLGHLEDGEVAWEEFAYHGGIYSVCYCRRSTPLATGSANPFSGGSASASQHLCGTVAEYRVSVALVLLSGPVTSNAIFSCFGGLACHVDISVAGVDSLESQEFLDSAALQVSTESCGADVIMEAMLSDSEESSDTLDDSSSDAQMKTFNQRFGFPNVVTVSAGYYVACWKPATSSPALLLGDFVVKGPVADKTPLESSSGEDIDVAVTYVGLESSDEAKAMRIQIAPIPEGRENDAFDCASLNLSEAQPYLRYTNLNRAPDTVESVSVQFSRIVWKAVSILIDNQSPNVLPGSYFAICFCNGNRGDCSVSENYFFQTNKWAVGGLSQRTLDEPLPVGRTITLTLPGKRLPLHNHLMLLPSLDRSTFAERHCGDAGGAGDGRIISATRLAHVTDWVGFKEVTITSASRTILMCWCGGDNCQTGDKFRTFVGSLSVEFPKFEATSAVIGGTFTVTLRGSVLRAQDAITVVDQSKQCGEEGTDEMDASAVEVPVGLEVTDLIQLRQARVVHADSTADSTSLSVADTSTPLVWQSWPIKTKPSVSGRLRVCYCSSEGGVCTGASRFSVWVGNVQVKGPSTGEVEIVTVDGEAKVETSGVSLALTDKLRIFAKSLAASDTVRDRRELCESGITAESTTVVADYVSPDGRTETFPVDLEPGFRYVLCWSGGTGASTQSARANPAVTRAAPTVNLPSLYRANSGSNASTVQLAEEATAALNMLQQAASTGSATSALAPHAETETPTETWSYLDAITPTGFSTGLEFRLVQNFESEVLYIPGSPNVSHSYVAYVGQKDLQADCEEIKQNPLITMETMIHIQDDSVSFSVGRISEAGLYPVCVCDSTANECYDVGTAHVDKTYWKTVAELVYDNRFFMLPCVTRGIQASAADGQSWSEDRVWLPDGMGAWSFVLTTTDSDSKPAPVLKRTPATGSKAATWVNFYEKGLRSTVACATGSGQRIFFLGPGVVYMMDPVPGLTPDLSTATGQMFTHSVLKPVDFSVREPYIFFSDYETQVITSINIENPSLTHAFFPTDPVMLFSAGVNVMDTDENFMALCVADTFNHIVGRLNISFDTMNKPQSQVTGTPWTAYFGTPKTAQNGINGFSYPFALTSYSPQSTSEAELMSLLLVTELVSDRLVFLDLSNNGLTFYKQISLSERHLISGLQSVDKTVMLISRAWPPTSKSGGMDAYVSLLNLEDVGGDLYFTYPDFRSKLQSGLFYSFEPLITGSVIQSFKEVSGSDLAKMGLTLNSATGVISGTVSHTGPFTIAVAGGDLLETFTWTISGEAGCRSGEYFDSTNNACELCPVGTFRDQEANLQKCHDIKPYSTTLSPGSTHLAQCRCFPGFEIGNLGDCHPCGAGTYKSSISDTKCTGRCPGNMHSYIQGAENEEDLLCMCDAGYYEDGGGCTPCQQGYYCPGEHSPPEPCPENHTTKGGASKSISDCVCVAGYTKQGDACVECDRLSYKGTTGNDACTGCPQPAAKGDRDALIASTKLDEAQFTTKPGAKKVSDCMLCASGFFYDVSNGGCTPCRKNYYCPGTDQEPRACVENATTLRGGAESTFDCKCPKGYGGSVARNPLDKAIVCVACPKNTFQHLDGVMTDCLPCPPFTMTKSTKSASFSACVARPGFYLSSRLSDMSRSLAESRSDDGTVGDDVDLDDNALSGTTNSGWTTSSSNSERVRKAEVQYENMSDEELLDLPRLCQRGTGLIDILLPEVKMQKYTNSFEQCIIACARNVYCTSLTFTNEGNAVPAMTASVTNHTGTFIIGYWICELHMYGPPVDQETVASITDPITETVVPASWTVSCAMQRPESDTVWRSVTYEECPVNAYCPGDEEAQIYQCPASSVTLANRASAAEHCKCIPGYHLSGRQCEPCRVGTYKNTTDNTNCAECPTGFTTENLASISAYDCACIPGLYMIANADADAEGEADHTPADGSSNSSEDSIVTHPKPDADSSDSQAPAEQTEGHAGNTNQQVDAADGETPDTTHEEASEAESVSAVELRGGLLVRGDGGVLQRAFKASQNSASKRSSRALGDAIGEEQGLSFYQTTAAPWLQPDIRQELEKIVTLHPCVSCYKHMYCPGLWMDPPVNQIHMPPQHCPEGSTVPLSTALSDSVEKCLCMAGYAVVEGSTGGTHEDNAYFGCEKCAAGTYKELQENAPCAGRCMRDAETIEGAVAKIQCFCKIGKYAVVAEDAEGIITCQDCIAGGVCPGGLKTRARQAVEQDHSFVKITIDDHQVPFPSSGFYAVYKPLNETVWSPAMVPMVASFTGDTFKEFTDTGPAPDDHTDEGGANLDSTGGSGEPSSSAPVDPSGENEGQLLTGTTGAVSALQMRSRANDTSVHQYDRIPDIHPCVDDVRCRGGSHNSCVHGSAGYLCSACEEDYSEIRYKSGCQACLPLWLDSFIFILMRLVVCGIIWIITALTIIAVQQQACIHPVLIRIVMSHMFFLSVYGLMPATSQSQLAGWASIYRLFFFEFYFALHPYFKMPCFFRSLGIVMPEAHVWYWQHFFQIFVPFIDAVLLTIIGAICVATYKVMYSAYISRVLVVLEEARQAHGDDMWTEKTIRKIESERCLGMFRYIYGTSTPWENFVRLCTDLIPAYTAIWFWHFPTFVIECTMLMGCIETRYKSEDPISVLAAFPVQICSFENPYFLSGLILGGVGLLVWGVGSIAGFVAYMSGDHSSDTIEQRFKHGFLVNGYQYAYRWWEGVIGLRKTCVALIITMYVHANASGAQEIFRNSANLALTVLSTALQLQLEPFDKRSHDMANRMEFYGLMVNIIIGVIFQGSYYFEVFKYMGAIPLAVAIFYYLYVLWSLFVEWGRMVMMRPHLVSIPSLWRYYNRVTRSLARLYTSRNAKIYYNYITKDMVLEAATKSRVFHLRRLLLRRKKTSYRKINYENRTYFVAALSDSLSQLVIAWCQFTIPGDWLDFTIRYAFCYCFWQRYQDNRSLRVPLDLEEFEAVKPTLFSDWYYDSEKNDPQGEGDIDFGTEILEGGEITFNTAEQDFLDLMLDDDVYDDSPITLMELYVAVQSMQHVPQRQLRRLHLAYRERMTQAGDSTAPQLRKENHALEGELEELNRALLEMAGADENMPDLTFSPLDFFFTVEMVNQAQLEVERLRGLIESEIDDIARARAAQAVAVHLELSMNEAADVDKLLEAMETDERTTKEEEMTRIGYVEESTSRMEKKAGLAGRRARLAFADKRPPVNLDDKRRIKLGLAAGVGGAQRRRIGLVTRGAEGPPGAKRRIGRHEVEFHRTVQGLAAGAAPAAGLRSHMGTSSSLGDQLGDDRRTVRLGTNLSTPSAVGNKRTLRRDTSGASAELIVDTAPKAPAATRTLSPLLDREPPVVESEGSVGERRESPTPSRSPSGTTRTVGSVVRSVTPEPSDSVGREESGSEAPLISPSASSLASPRSLSPLTERRGSQSSDLGGRRRLGPLTGPRPPPPVGEAAPAEAPSPSPRSSSPLAAQPKGQGLPLGKRQLKKPGSPKQE", "sequence_length": 7603, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2f62fbdd87c6124fb23db9dcc9866308e703582e813e0c2ce6648859e5759e73", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A7J6KC99.json", "taxon_id": "5811", "uniprot_accession": "A0A7J6KC99", "uniprot_release": "2026_03" } ], "pfam_id": "PF24634", "short_name": "DUF7631", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24635", "short_name": "DUF7632", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24636", "short_name": "DUF7633", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24639", "short_name": "DUF7634", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24640", "short_name": "DUF7635", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24642", "short_name": "DUF7636", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24643", "short_name": "DUF7637", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24644", "short_name": "DUF7638", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24645", "short_name": "DUF7639", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24646", "short_name": "DUF7640", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24648", "short_name": "DUF7641", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24649", "short_name": "DUF7642", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24650", "short_name": "TT1_Tal", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24651", "short_name": "DUF7644", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24655", "short_name": "DUF7645", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24657", "short_name": "DUF7646", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24658", "short_name": "DUF7647", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24659", "short_name": "DUF7648", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24661", "short_name": "DUF7649", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24662", "short_name": "DUF7650", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7651-pf24663.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24663", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7651-pf24663.yaml" } ], "pfam_ids": [ "PF09733", "PF23320", "PF24663" ], "protein_name": "Polycomb group protein EMF2A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGLPLTDHDAVNTGCEFDCQRSSDQMCCEHSVAQFSSDQQLNPEENLALYCKPLELYNFIRHRAIENPPYLQRCLLYKIRAKQKKRIQITISLPGSNNKELQAQNIFPLYVLFARPTSNVPIEGHSPIYRFSQARLLTSFNDSGNNDRAEATFVIPDLETLIATQAYGLTFILVSRGTKKNKGRTGQNLCENDCSEKHVDYSSLRKLAGKCFWGKIPITLLNSSLETCADLILGHIVESPISICMSPGYLEPTFLEHDNCLSFCSRKADAMVPYQLQVKVSAAEAGAKDILKSPYNSFSYSDVPPSLLLRIVRLRVGNVLFNYKNTQMSEVTEDFTCPFCLVRCGNFKGLECHMTSSHDLFHYEFWISEDYQAVNVTLKKDNMRTEFVAAEVDNSHRIFYYRSRFKKSRTEILPVARADAHIMESGSPEETQAESEDDVQEENENALIDDSKKLHGSNHSQSEFLAFGKSRKLSANRADPRNRLLLQKRQFIHSHKAQPMTFEEVLSDNDSEDEVDDDIADLEDRRMLDDFVDVTKDEKRIMHMWNSFIRKQSILADSHVPWACEAFSRHHGEELLENSALLWGWRMFMIKLWNHSLLSARTMDTCNRILDDIKNERSDPKKQ", "sequence_length": 624, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "d912220b4cb880d5fa4bdbb2fe84e13c1f013e592b8afd673cb840d801571973", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q0JF48.json", "taxon_id": "39947", "uniprot_accession": "Q0JF48", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7651-pf24663.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24663", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7651-pf24663.yaml" } ], "pfam_ids": [ "PF09733", "PF23320", "PF24663" ], "protein_name": "Polycomb group protein EMF2B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCRHQPRARLSPDEQLAAEESFALYCKPVELYNIIQRRSIKNPAFLQRCLLYKIHARRKKRSLITISLSGGTNKELRAQNIFPLYVLLARPTNNVSLEGHSPIYRFSRACLLTSFHEFGNKDYTEATFVIPDVKNLATSRACSLNIILISCGRAEQTFDDNNCSGNHVEGSTLQKLEGKCFWGKIPIDLLASSLGNCVSLSLGHTVEMSSTVEMTPSFLEPKFLEDDSCLTFCSQKVDATGSFQLQVSISAQEAGAKDMSESPYSVYSYNDVPPSSLTHIIRLRSGNVLFNYKYYNNTMQKTEVTEDFSCPFCLVPCGSFKGLGCHLNASHDLFHYEFWISEECQAVNVSLKTDSWRTELLAEGVDPRHQTFSYRSRFKKRKRVEISSDKIRHVHPHIVDSGSPEDAQAGSEDDYVQRENGSSVAHASVDPANSLHGSNLSAPTVLQFGKTRKLSVERADPRNRQLLQKRQFFHSHRAQPMALEQVFSDRDSEDEVDDDIADFEDRRMLDDFVDVTKDEKLIMHMWNSFVRKQRVLADGHIPWACEAFSQFHGQELVQNPALLWCWRFFMVKLWNHSLLDARAMNACNTILEGYLNGSSDPKKN", "sequence_length": 604, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5732ad9388e50c0a80a75904a14f59c8423800aa684acdaadc2a83a3065ed6f5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q69KN0.json", "taxon_id": "39947", "uniprot_accession": "Q69KN0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/epigenetic-programming-in-the-endosperm-go0141044.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0141044", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/epigenetic-programming-in-the-endosperm-go0141044.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/vefs-vrn2-emf2-fis2-su-z-12-box-found-in-arabidopsis-thaliana-polycomb-cd21553.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd21553", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/vefs-vrn2-emf2-fis2-su-z-12-box-found-in-arabidopsis-thaliana-polycomb-cd21553.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/zinc-finger-binding-znb-and-c2h2-type-zinc-finger-zn-domain-found-in-a-cd21749.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd21749", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/zinc-finger-binding-znb-and-c2h2-type-zinc-finger-zn-domain-found-in-a-cd21749.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/emf2-like-duf7651-ipr056068.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056068", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/emf2-like-duf7651-ipr056068.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/polycomb-protein-suz12-like-zinc-finger-domain-ipr057540.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057540", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/polycomb-protein-suz12-like-zinc-finger-domain-ipr057540.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/polycomb-protein-vefs-box-ipr019135.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR019135", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/polycomb-protein-vefs-box-ipr019135.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7651-pf24663.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24663", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7651-pf24663.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/zn-suz12-pf23320.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23320", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/zn-suz12-pf23320.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/vefs-box-pf09733.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF09733", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/vefs-box-pf09733.yaml" } ], "pfam_ids": [ "PF09733", "PF23320", "PF24663" ], "protein_name": "Polycomb group protein EMBRYONIC FLOWER 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPGIPLVSRETSSCSRSTEQMCHEDSRLRISEEEEIAAEESLAAYCKPVELYNIIQRRAIRNPLFLQRCLHYKIEAKHKRRIQMTVFLSGAIDAGVQTQKLFPLYILLARLVSPKPVAEYSAVYRFSRACILTGGLGVDGVSQAQANFLLPDMNRLALEAKSGSLAILFISFAGAQNSQFGIDSGKIHSGNIGGHCLWSKIPLQSLYASWQKSPNMDLGQRVDTVSLVEMQPCFIKLKSMSEEKCVSIQVPSNPLTSSSPQQVQVTISAEEVGSTEKSPYSSFSYNDISSSSLLQIIRLRTGNVVFNYRYYNNKLQKTEVTEDFSCPFCLVKCASFKGLRYHLPSTHDLLNFEFWVTEEFQAVNVSLKTETMISKVNEDDVDPKQQTFFFSSKKFRRRRQKSQVRSSRQGPHLGLGCEVLDKTDDAHSVRSEKSRIPPGKHYERIGGAESGQRVPPGTSPADVQSCGDPDYVQSIAGSTMLQFAKTRKISIERSDLRNRSLLQKRQFFHSHRAQPMALEQVLSDRDSEDEVDDDVADFEDRRMLDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFSRLHGPIMVRTPHLIWCWRVFMVKLWNHGLLDARTMNNCNTFLEQLQI", "sequence_length": 631, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e7b69684bbf87301baca81f2c3651517684014ae3e08d753a42fa9b830b29de9", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8L6Y4.json", "taxon_id": "3702", "uniprot_accession": "Q8L6Y4", "uniprot_release": "2026_03" } ], "pfam_id": "PF24663", "short_name": "DUF7651", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24665", "short_name": "DUF7652", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24670", "short_name": "DUF7653", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24672", "short_name": "DUF7654", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24674", "short_name": "MACPF_SNTX", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24676", "short_name": "DUF7656", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24677", "short_name": "DUF7657", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7658-pf24678.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24678", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7658-pf24678.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/f54d1-6-c-pf24469.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/f54d1-6-c-pf24469.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-f54d1-6-2-pf24464.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24464", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-f54d1-6-2-pf24464.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-f54d1-6-pf24462.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24462", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-f54d1-6-pf24462.yaml" } ], "pfam_ids": [ "PF03782", "PF06119", "PF24462", "PF24464", "PF24469", "PF24678" ], "protein_name": "Uncharacterized protein F54D1.6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTSSVRLAFLATLLLLLPLEAQIQQANSANVNQNVGQQDTGTLFTGTGTNLYYGVNLVPFGPEVGDQEVNPGLLTAGQTIDLHMYFPFYGGLYNYSTLSVNGYIGFATVLDQGPTLNVGPDMTDWPRHEDPAMIAPYLCKQQIPQNLNPGMRSGVFYRLMMRQSLFGRQTGSNMNMGQATYQSSFFGQSASKACPGTPDSYVRCDSQADYFLEEMQRWLIEGVAGAAAFRADAALVVTWYNTASAISGRSDIDSGQLATYQAIWLTDRTARLSYVILNYDRLGFDAADFRQNSRSGRCQALFNGGNHTGLVPVDPTQDFKNTPKVLAQRSGVPQMVRGRYMFRVDDVVRPAGCSNKTGGTYPMLIYPNIVNMLGEMTVDVNAICLDKSQTYILMIEQRQTATCTVLTSAIARCNLPKIFDWGTKTVYFQPQSGGANDEKAFVGYIYFVPPTLDPMRLDIGNVYDWFKNPLPYTTMPLVWYPRNFTNPEMTQHMDQVRMNDDTLYSTQLGLYVIAYREYKDDTIKKFRPEHRVICRLATYSNRNTYEYRWKPQEERINLYQVEQWYMNDWERQNDLYHYRFGYLKLAPLKTNQEQNPQQLLSGLVSSPISLHFLWTSNNPQFATTTYSQQDESARTEYVKKKSLEMCHDWYDEDGAQWNFIRDTETNSSCPCIERQAIADIGRFMPHPRCSQAFRDITCTTSIGSRNCYMSSQNVMTTYAGDGRQYNENLARFPTHYGQVCCYDDQGHLMQTSYQPVIKVTPEVPYNPGFPMRAYEFGTAPYMGQYEVPGLSAFHNDYMPYFLCCKFADFRCQMFYWRRPSSGCQEYQPPAYGEVMGAGTFNTIDNDKFIFNEPGVYNGLYIPHTLSTPEVKVQIRMERYPNRRVDFSLLGRYMAQQDLVQPTNATVVTGVVLEATGTDRVHVVARKDTRRFRYRTSIIVGNILRYFDTMRIQRFKGVMIYVNNVERGQPEIYVVLEEAQIGIRVRESYAIDIDRLSEYQESMGILNIAVSVPPQYGVRPDGDKTREQEIRQRYNLPRVSGVFRPFPDQSSGSYLNTLTLNDVNSETYRQQIINMYRVQGSGEPGSDQNINNQGNNYGMPTENMFTTSRDEDKKFEVFPEAQMKSGPIFKTSPKYETGAYRFYPMTGQVLNQRLQTCRDMQQNTNINMQPLQSQLTGEYGQTQCPDNPSSIIQDCGDSVPCLYDYYNFNAKLLGLNVKNEWNTFTSDRFDASRQYNSCGVINIEYPEYLMKTSSMSSAYLQGDVARFECFQSHWIYGVHEYKCGIVVDRNQRNIIDPRDYRFEWNKGEQPWCRSREKQNFLTWLAIIGGIFGVLVFVILIFLCCWIVKQKKKGEAAERRGYDMASRSSMTGSRGGKKYPIHESEPLNEKRFDADTYRDDDFYPPAREEQYAARNEDLHGLKTSV", "sequence_length": 1423, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "06a534c12b28b532032a2f9fa3a031364b6c06eb391a1fc122360ad86c91053c", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q20762.json", "taxon_id": "6239", "uniprot_accession": "Q20762", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7658-pf24678.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24678", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7658-pf24678.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/f54d1-6-c-pf24469.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24469", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/f54d1-6-c-pf24469.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-f54d1-6-2-pf24464.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24464", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-f54d1-6-2-pf24464.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/ig-f54d1-6-pf24462.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF24462", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/ig-f54d1-6-pf24462.yaml" } ], "pfam_ids": [ "PF03782", "PF06119", "PF24462", "PF24464", "PF24469", "PF24678" ], "protein_name": "Uncharacterized protein R09E10.5", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRGCRHHLAAVVLLIATFPPLAYNQNIGGINQNIGGTPQNPTINQVSPGQIFSGTGNNPFYGVNLVPFGPEAGDLMVNPSMLTSGMTIDLYMFFPYYGGLYNYTTISVNGYLGFATVLDQGPTINVGPETTDWPRQEDPAMIAPYLCKQQVPQQGNPARRAGVYYRLLLRQSLFGRESNSNLNLGGTLQQNAFFGQQASQACPGTADSYVRCDSNSDYFLDQMMIWVQEGVAGGAMFRADAAVVVTWYNTASAISGRSDIDAGQTGTYQVIWLTDSTARLSYVIINYDRLGFDAQDFRGNSRSGRCRAVFNGGNHTGTVEVDPTQPYKNTPKVLAQRSGVPHMVRGRYMFRVDDVVRPAGCSNKTGGTYPIMIYPNIVNMLGDMTVDVNACCLDRTQTYIMMIEEREVATCQVINPAIARCSLPRIYDWGTKTVYFQPESRGANDEKAFVGYIYFVPPTLDPMRLDIGNIYEWYKNPMTNYLMPITWYPRNFTNPDILTNGNNMGVRISDDSMYGVQLGLYIVGYREFKDDEIKKFRPEYRTLARITTYSNQNNANYRWMPQEEVINTNQVQQWYLTDWERMHTLYTYRVGFFKLAPINPNDANGTQLLPGLVSAPISLHWLWTPENQQFATLTLNQQDRDQRIEFVKEKSREMCHDWYDEDGALWNFIRDTETNTSCPCIETQALLDLGRFMPHPRCSQMFRDITCTTVIGSKNCYMSSSNIYSSYAGNGNTFNNMDTNRFMTHYGQVCCYDESGYLMQTPYQPVIKTQREYFYNPGYPLRAYEFGTAPYMGQFEVPGLSVFHNDYMPYFLCCKFADFRCQMFYWRRPSSACQQYQPPAIGHAQGAGVFQTIDNDKFIFNQPGVFNFLYIPQSVRTPEVRIQTRLERYPNRKVDFGLLGRYISQYELVQPTNATVITGIALEATGTERVIVMTRKDTRRFRYRTNIIVGNILRYFDTIRLQRFRGVLIYVNNVERGQPEIYVVLEEAQIGVKVTESYALDIDRLPNYQESMGMLDIQISVSPQYGVRPDGDKTQETQYRQMYNLPRVSGLIRPYPDQTSGSLNEGLTLNDVNSDSYRQQIINNYLVLGTGEPGTQQNQAGTLNQNMPQDNMFTTSRDEDKQFDVFPEASMRSEPVYKTAPIFDTGSYRFVPQTGAMILQLLNTCRDLQNNPNTDLQPYQSIATLSYGLQCPDDPGQVLTECGDSVACLYDYALLNSKVLGQEEQDAWNMFTTDRALAIRQYNSCGAINIEYPEYMMKTPALSSGYLQGDVARFECYQSHWVKGDHEYKCGIVVDYNRPNEYRFEWNKGNQPWCRSRIKENYFKWLAVIAGIVGIIIVILLIFLVFWCIKRKKLQESRNYSGTAAYSNNAFQNQTYETKPSRALSVGDLSTAPRTVAMPPPRGTTATPMTLEPRGFSPVPSDVRGSQGMLGLNTSV", "sequence_length": 1437, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bd80738f383e6f79517924e781c12c48bcec569f6fe205f849b6f5ae9a0869b1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q21874.json", "taxon_id": "6239", "uniprot_accession": "Q21874", "uniprot_release": "2026_03" } ], "pfam_id": "PF24678", "short_name": "DUF7658", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24692", "short_name": "DUF7659", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24693", "short_name": "DUF7660", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24697", "short_name": "DUF7661", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { 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protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDNQHKKIKGYRDLSQEEIDMMNRVKELGSQFEKLIQDVSDHLRGQYNASLHNRDEITRIANAEPGRWLAIGKTDIQTGMMAIIRAIAQPDSF", "sequence_length": 93, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3655b662fe2105e25f1806d54ce81c753e404b59ec137ba605e07b8662afd54a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A1C8HPQ3.json", "taxon_id": "1815974", "uniprot_accession": "A0A1C8HPQ3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Clostridium botulinum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acb2-tad1-hairpin-pf24729.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24729", "section": 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"canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/acb2-tad1-hairpin-pf24729.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24729", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/acb2-tad1-hairpin-pf24729.yaml" } ], "pfam_ids": [ "PF24729" ], "protein_name": "Anti-CBASS protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIEDIKGYKPHTEEKIGKVNAIKDAEVRLGLIFDALYDEFWEALDNCEDCEFAKNYAESLDQLTIAKTKLKEASMWACRAVFQPEEKY", "sequence_length": 88, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ce3c8e63d7254a6a4211458b3ecd4ae8b0a3b57cc11023a3a26e6ab61e12d82d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P13314.json", "taxon_id": "10665", "uniprot_accession": "P13314", "uniprot_release": "2026_03" } ], "pfam_id": "PF24729", "short_name": "Acb2_Tad1_hairpin", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24730", "short_name": "DUF7682", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24731", "short_name": "DUF7683", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24733", "short_name": "DUF7684", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24734", "short_name": "DUF7685", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24735", "short_name": 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[] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24743", "short_name": "DUF7692", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24745", "short_name": "DUF7693", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24746", "short_name": "DUF7694", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24749", "short_name": "DUF7695", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24751", "short_name": "DUF7696", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24752", "short_name": "DUF7697", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24753", "short_name": "DUF7698", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Oryza sativa subsp. japonica", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7699-pf24766.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24766", "section": "canonical_examples", "url": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7747-pf24927.yaml" } ], "pfam_ids": [ "PF24927" ], "protein_name": "Uncharacterized protein ZK892.6", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYDYTCEGRTPRPNFGLYKPLKKGNFPKTNDGMQHDLVNDVLGGKSSKYCPFILPAGIANDGTFYLKLDSKFWNDSYWQLKYLVNQSDLIEEIGCLNTQVPEAPPFWKRHICLFFVDGKDVTFCLLATDKVGPWSDIEETSAPLRFDYHNHLRVCVRKDTIQEFQLCTMDSTLLSCPRLRKKYMFKGAGNNMDMACLCIITLSVEKLHQLCNLNINHQESHLQDVTHPIFKKRSSTC", "sequence_length": 237, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2a1388f3e8b9c826b7f9c7404dd22dd2fa1c5e04100261913df9ea0ffd7085c1", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q09619.json", "taxon_id": "6239", "uniprot_accession": "Q09619", "uniprot_release": "2026_03" } ], "pfam_id": "PF24927", "short_name": "DUF7747", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24928", "short_name": "DUF7748", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Dictyostelium discoideum", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/glfb-c-pf24929.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF24929", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/glfb-c-pf24929.yaml" } ], "pfam_ids": [ "PF00617", "PF00618", "PF00620", "PF24929" ], "protein_name": "Ras guanine nucleotide exchange factor glfB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": 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"sequence_length": 1601, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c73e31b388f772a75461581d7f7d692824d6c0b75907ccb1dd2255c9960fc4fa", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q54L90.json", "taxon_id": "44689", "uniprot_accession": "Q54L90", "uniprot_release": "2026_03" } ], "pfam_id": "PF24929", "short_name": "GlfB_C", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24930", "short_name": "DUF7750", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24933", "short_name": "DUF7751", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24934", "short_name": "DUF7752", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { 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"example_count": 0, "examples": [], "pfam_id": "PF24944", "short_name": "DUF7758", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24945", "short_name": "DUF7759", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24949", "short_name": "DUF7760", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24952", "short_name": "DUF7761", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24953", "short_name": "DUF7762", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF24954", 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"MVFESVVVEVLNRFLGDYVVNLDESQLSLGIWKGAVALKNLVIKENALHELDVPFKVKVGHIGSLKLKIPWKNLYTQPVEAVLEEIFLLIVPSSRIQYDPIKEEKQLMETKQQELKRIEKAKQKVFDKEKPREEKQDTFTEKLVTQIIQNLQVQISSIHIRYEDDITNGDKPLSFGISLQNISLQTTDQYWIPCLHDNTEKLVRKLIRLDNLFAYWNVNSEMFYLNDYDESLKALKNGIVNENIVPEGYDFVFRPISASAKLQMNRRSDFDFSDPKINLAVDLHTIAIEFNKPQYFSLMELLESIDMMTQNQPYRKFKPSVPLHLHAKEWWAYAIHSILEVNVCPSLRMWSWEHIRNHRYKMKRYREFYKKKLTSKKPSPEILMSLEELEKTLDVFNITIARQQAEVEAKKAGYKIYKEGVKDPEDNAGWFGWLWTWSESNANQQQDVKPGILEEMLTPEEKSLLYEAIGYSETAVDPTLPKTFEALKFFVHLKSMSIVLRENHQKPELLNVVVEGLSTSVVQRPGAQAIKFETKIDSFHITGLPDDFKKPHLLSSLDDTSLLQITFEINPLNETVAQRCTIEAEPLEIIYDARTVNSIVEFFRPPKDVHLAQLTSVTLTKLEEFRAKTATGLLYVIETQKVLDLRINVKASYVIVPQYGNFSPTSNLLLLDLGHLKVSSKRRSLLPDVRPSEASLEDIMHRAYDSFDIQLTSIQLLYSRVGDNWKEARKLNVSTQHILIPMHVNVELSKAMVFMDIKMPKFKISGKLPLVSLRISDKKLQGIMELLGSIPKPEPVTDVSAPARSFQIQASALPVSHISQKLIPLLEQPVTEDDSEEEFFDAPCSPLEECPQVSCRDKCTRQKKLQKKDCVMNLIQLRMRFEVAEVSIQFYHLVGDCELPVLEMGALGLGTEAEFRTFDLKGSAFLKELWLKCPEYLDENKKPVYLITTLDNTMEDLLTLEFMKVEKNAPNLNSTYNNVLQLIKVNFSSLDIHLHTEALLNTMNYLNNILPELREKSASVSAAEPEDKGDIIKKLALKLPTNEDIITLQLLAELSCLQIFIQDQKQNISEIKIEGLDSEMIMKPLVTEINAKLRNIIVLDSDKMAIYKKALYITGKEVFSFKMISYMDATAGYAYTDMSVVDIRVHLTVGCIEVVFITKFLYSILAFIDNFQAVKDALAEATVQAAEMAADGVKELARKSSRFALDVNIKAPVVLIPQSPVSQNVFVADFGLITMKNIFVTVTETQSNIPPVIDLITIKLSKMRLYRSQFRNDTYQEVLDLLLPLNLEVIVERNLSWEWYKEVPCFNIKAQLKPMEFILSQEDLTTVFQTLHGNIWYGQDLSAPSSANKDPETMTSGVTSPPDHSPATVVTAAVVEVHPQASQAHTMLNVSFQTDYLTMALYSPGPDEASFTDVRDPSLELAEFKLENIISSLKIYTDDSTVFSFSVKNCILDDKRSHVMKATPRMIGLTVGFDKKDMVDIKYRKIKTFVVTDAVVQEMYVCASVEFLMTVAHIFFDAYMTSTALETSVQTRTTREAPAQELGKWEMNILIKNPEIVFVADMTRNDAPALVITTQCEICCKGEPTSNTVTAAIKDLQVRACPFLPVKRKGKVTTVLQPCDLFYQATQLGRDPQMIDISVKSLTLKVSPVIINTIITITSALYTTKETVPEENTSNIAHLWDKKDTKNLKMWFLEESNESEKVVPTNEVMPGGETLNLRIDSIFIVLEAGIGHRTVPMLLAKACFSGESKNWLSLINLHCHLELEVHYYNEMFGVWEPLLEPLEIDQTDDFRPWNLGIKMKKKAKEAIVESDSEAENYKVPEYKTAISFYSRDQLNITLSKCGLVMLNNLVEAFTEAATGSSSVFLRDLAPFMIFNSLGLTVSVSPSDSFSVLNVPLAKSYELKNDESLSMDYVRTKDNDHFNAMTSLSSKLFFILLTPANHSVADKIPLTKVGRRLYTVRHRESGVERSIICQIDTVEGSKKVTIRSPVQIKNHFSIPISVFEGDTLLGIASPENEFNIPLASYRSSLSLVPEDQDYQLCEGIDFEEIIKYDGQLLKKKCRSTNPSKKSFVINIVPEKDNLASLSVYSEDGWDLPYVLHLWPPILIRNLLPYKVAYYIEGIENTVVTLSEGHSSQIYNVEMDQAKLHLKLLDYLNHDWKSEFYIRSSQQDINFINFTCLTEMEKSDLDIAIHMTYNTGQTVVAFHSPYWMVNKTNRMLQYKADGIHRKHPPNYTKPVLFSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAIRCKGLKMEYQVGVTINLSSFNITRIVTFIPFYMIKNKSKYHISVAEEGSDKWLSLDLEQSIPFWPENASNILLIQVERSEDPPKRIYFNKQDNCILLRLNNELGGIIAEVNLAEHSTVITFSDYHDGAATFLLINHTKSDPVQYNQSSLGEIEDSLPPGKAVYYTWADPVGSRKLKWSCGQSYGEVTHKDDMMTPISVGKKTIYLVSFFEGLQRIILFTEDPRVFKVTYESEKAELAELEVVLALQDVGISLVNNYTKQEVAYIGITSSDVVWEAKPKKKARWKPMSVKHTEKLEKEFREYTEASPLEDKVVELDNIPVRLTPSGNDMKILQPHVIPVRRNYLPALKVEYNTSAHQSSFRIQIYRIQIQNQIHGAIFPFVFYPIKPPRSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKVLIQEMDLSLDLGFVYALADLVTKAEVTEKTEVEHFHKDVEAFEQEYEVVSSVDQSQVNLFEYFHISPIKLHLSVSLSSGRDEAKDSEQHGGLIPVHSLNLLLKSIGATLTDVQDVVFKLAFFELNYQFHTTSELQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVTRPTGGIIDMASSTFQGIKRATETSEVESLRPPRFFNEDGVIRPYRLRDGSGNQMLQVMENGRFAKYKYFTHVMINKTDMFMITRRGVLFVTKGTFGQLTCEWQYTFDEFTKEPFIVHGRRLRIEAKERVKSVFHAKEFGKIVNFKTPEDARWILTKLEEAREPSPRL", "sequence_length": 3166, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6aee44882c06dfef1027668ec3c70d6a0f6e1821d9ab2a9351740faa89e71e33", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5H8C4.json", "taxon_id": "10090", "uniprot_accession": "Q5H8C4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/vps13-m-pf25033.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25033", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/vps13-m-pf25033.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/vps13-n-pf12624.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12624", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/vps13-n-pf12624.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q5THJ4", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12624", "PF25033", "PF25036" ], "protein_name": "Intermembrane lipid transfer protein VPS13D", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "7d09ed624c2640237415468ceac0f9740fc83cb17692c3da390ed4cfcff308df", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLEGLVAWVLNTYLGKYVNNLNTDQLSVALLKGAVELENLPLKKDALKELELPFEVKAGFIGKVTLQIPFYRPHVDPWVISISSLHLIGAPEKIQDFNDEKEKLLERERKKALLQALEEKWKNDRQQKGESYWYSVTASVVTRIVENIELKIQDVHLRFEDGVTNPSHPFAFGICIKNVSMQNAVNEPVQKLMRKKQLDVAEFSIYWDVDCTLLGDLPQMELQEAMARSMESRSHHYVLEPVFASALLKRNCSKKPLRSRHSPRIDCDIQLETIPLKLSQLQYRQIMEFLKELERKERQVKFRRWKPKVAISKNCREWWYFALNANLYEIREQRKRCTWDFMLHRARDAVSYTDKYFNKLKGGLLSTDDKEEMCRIEEEQSFEELKILRELVHDRFHKQEELAESLREPQFDSPGACPGAPEPGGGSGMLQYLQSWFPGWGGWYGQQTPEGNVVEGLSAEQQEQWIPEEILGTEEFFDPTADASCMNTYTKRDHVFAKLNLQLQRGTVTLLHKEQGTPQMNESAFMQLEFSDVKLLAESLPRRNSSLLSVRLGGLFLRDLATEGTMFPLLVFPNPQKEVGRVSQSFGLQTTSADRSDHYPAADPDGPVFEMLYERNPAHSHFERRLNVSTRPLNIIYNPQAIKKVADFFYKGKVHTSGFGYQSELELRVAEAARRQYNKLKMQTKAEIRQTLDRLLVGDFIEESKRWTVRLDISAPQVIFPDDFKFKNPVLVVVDLGRMLLTNTQDNSRRKSRDGSASEETQFSDDEYKTPLATPPNTPPPESSSSNGEKTPPFSGVEFSEEQLQAHLMSTKMYERYSLSFMDLQIMVGRVKDNWKHVQDIDVGPTHVVEKFNVHLQLERRLIYTSDPKYPGAVLSGNLPDLKIHINEDKISALKNCFALLTTPEMKTSDTQIKEKIFPQEEQRGSLQDSVMNLTQSIVLLEQHTREVLVESQLLLAEFKVNCMQLGVESNGRYISVLKVFGTNAHFVKRPYDAEVSLTVHGLLLVDTMQTYGADFDLLMASHKNLSFDIPTGSLRDSRAQSPVSGPNVAHLTDGATLNDRSATSVSLDKILTKEQESLIKLEYQFVSSECPSMNLDSTLQVISLQVNNLDIILNPETIVELIGFLQKSFPKEKDDLSPQPLMTDFERSFREQGTYQSTYEQNTEVAVEIHRLNLLLLRTVGMANREKYGRKIATASIGGTKVNVSMGSTFDMNGSLGCLQLMDLTQDNVKNQYVVSIGNSVGYENIISDIGYFESVFVRMEDAALTEALSFTFVERSKQECFLNLKMASLHYNHSAKFLKELTLSMDELEENFRGMLKSAATKVTTVLATKTAEYSEMVSLFETPRKTREPFILEENEIYGFDLASSHLDTVKLILNINIESPVVSIPRKPGSPELLVGHLGQIFIQNFVAGDDESRSDRLQVEIKDIKLYSLNCTQLAGREAVGSEGSRMFCPPSGSGSANSQEEAHFTRHDFFESLHRGQAFHILNNTTIQFKLEKIPIERESELTFSLSPDDLGTSSIMKIEGKFVNPVQVVLAKHVYEQVLQTLDNLVYSEDLNKYPASATSSPCPDSPLPPLSTCGESSVERKENGLFSHSSLSNTSQKSLSVKEVKSFTQIQATFCISELQVQLSGDLTLGAQGLVSLKFQDFEVEFSKDHPQTLSIQIALHSLLMEDLLEKNPDSKYKNLMVSRGAPKPSSLAQKEYLSQSCPSVSNVEYPDMPRSLPSHMEEAPNVFQLYQRPTSASRKKQKEVQDKDYPLTPPPSPTVDEPKILVGKSKFDDSLVHINIFLVDKKHPEFSSSYNRVNRSIDVDFNCLDVLITLQTWVVILDFFGIGSTADNHAMRLPPEGILHNVKLEPHASMESGLQDPVNTKLDLKVHSLSLVLNKTTSELAKANVSKLVAHLEMIEGDLALQGSIGSLSLSDLTCHGEFYRERFTTSGEEALIFQTFKYGRPDPLLRREHDIRVSLRMASVQYVHTQRFQAEVVAFIQHFTQLQDVLGRQRAAIEGQTVRDQAQRCSRVLLDIEAGAPVLLIPESSRSNNLIVANLGKLKVKNKFLFAGFPGTFSLQDKESVPSASPTGIPKHSLRKTTSTEEPRGTHSQGQFTMPLAGMSLGSLKSEFVPSTSTKQQGPQPTLSVGQESSSPEDHVCLLDCVVVDLQDMDIFAAERHPREYSKAPEDSSGDLIFPSYFVRQTGGSLLTEPCRLKLQVERNLDKEISHTVPDISIHGNLSSVHCSLDLYKYKLIRGLLENNLGEPIEEFMRPYDLQDPRIHTVLSGEVYTCMCFLIDMVNVSLELKDPKRKEGAGSLARFDFKKCKLLYESFSNQTKSINLVSHSMMAFDTRYAGQKTSPGMTNVFSCIFQPAKNSSTTQGSIQIELHFRSTKDSSCFTVVLNNLRVFLIFDWLLLVHDFLHTPSDIKKQNHVTPSRHRNSSSESAIVPKTVKSGVVTKRSSLPVSNERHLEVKVNVTGTEFVVIEDVSCFDTNAIILKGTTVLTYKPRFVDRPFSGSLFGIEVFSCRLGNEHDTALSIVDPVQIQMELVGNSSYQNSSGLMDAFNSEDFPPVLEIQLQALDIRLSYNDVQLFLAIAKSIPEQANAAVPDSVALESDSVGTYLPGASRVGEEIREGTRHTLDPVLELQLARLQELGFSMDDCRKALLACQGQLKKAASWLFKNAEPLKSLSLASTSRDSPGAVAAPLISGVEIKAESVCICFIDDCMDCDVPLAELTFSRLNFLQRVRTSPEGYAHFTLSGDYYNRALSGWEPFIEPWPCSVSWQQQAASRLHPPRLKLEAKAKPRLDINITSVLIDQYVSTKESWMADYCKDDKDIESAKSEDWMGSSVDPPCFGQSLPLVYLRTRSTASLTNLEHQIYARAEVKTPKRRQPFVPFALRNHTGCTLWFATLTTTPTRAALSHSGSPGVVPEGNGTFLDDTHNVSEWREVLTGEEIPFEFEARGKLRHRHTHDLRIHQLQVRVNGWEQVSPVSVDKVGTFFRYAAPDKNSSSSTIGSPSSRTNIIHPQVYFSSLPPVRVVFAVTMEGSARKVITVRSALIVRNRLETPMELRLDSPSAPDKPVVLPAIMPGDSFAVPLHLTSWRLQARPKGLGVFFCKAPIHWTNVVKTAEISSSKRECHSMDTEKSRFFRFCVAIKKENYPDYMPSNIFSDSAKQIFRQPGHTIYLLPTVVICNLLPCELDFYVKGMPINGTLKPGKEAALHTADTSQNIELGVSLENFPLCKELLIPPGTQNYMVRMRLYDVNRRQLNLTIRIVCRAEGSLKIFISAPYWLINKTGLPLIFRQDNAKTDAAGQFEEHELARSLSPLLFCYADKEQPNLCTMRIGRGIHPEGMPGWCQGFSLDGGSGVRALKVIQQGNRPGLIYNIGIDVKKGRGRYIDTCMVIFAPRYLLDNKSSHKLAFAQREFARGQGTANPEGYISTLPGSSVVFHWPRNDYDQLLCVRLMDVPNCIWSGGFEVNKNNSFHINMRDTLGKCFFLRVEITLRGATYRISFSDTDQLPPPFRIDNFSKVPVVFTQHGVAEPRLRTEVKPMTSLDYAWDEPTLPPFITLTVKGAGSSEINCNMNDFQDNRQLYYENFIYIAATYTFSGLQEGTGRPVASNKAITCAELVLDVSPKTQRVILKKKEPGKRSQLWRMTGTGMLAHEGSSVPHNPNKPSAARSTEGSAILDIAGLAAVTDNRYEPLMLRKPDRRRSTTQTWSFREGKLTCGLHGLVVQAKGGLSGLFDGAEVVLGPDTSMELLGPVPPEQQFINQKMRPGSGMLSIRVIPDGPTRALQITDFCHRKSSRSYEVDELPVTEQELQKLKNPDTEQELEVLVRLEGGIGLSLINKVPEELVFASLTGINVHYTQLATSHMLELSIQDVQVDNQLIGTTQPFMLYVTPLSNENEVIETGPAVQVNAVKFPSKSALTNIYKHLMITAQRFTVQIEEKLLLKLLSFFGYDQAESEVEKYDENLHEKTAEQGGTPIRYYFENLKISIPQIKLSVFTSNKLPLDLKALKSTLGFPLIRFEDAVINLDPFTRVHPYETKEFIINDILKHFQEELLSQAARILGSVDFLGNPMGLLNDVSEGVTGLIKYGNVGGLIRNVTHGVSNSAAKFAGTLSDGLGKTMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLTSVITSTVEGVKTEGGVSGFISGLGKGLVGTVTKPVAGALDFASETAQAVRDTATLSGPRTQAQRVRKPRCCTGPQGLLPRYSESQAEGQEQLFKLTDNIQDEFFIAVENIDSYCVLISSKAVYFLKSGDYVDREAIFLEVKYDDLYHCLVSKDHGKVYVQVTKKAVSTSSGVSIPGPSHQKPMVHVKSEVLAVKLSQEINYAKSLYYEQQLMLRLSENREQLELDS", "sequence_length": 4388, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "7d09ed624c2640237415468ceac0f9740fc83cb17692c3da390ed4cfcff308df", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q5THJ4.json", "taxon_id": "9606", "uniprot_accession": "Q5THJ4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/dense-core-granule-membrane-go0032127.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032127", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/dense-core-granule-membrane-go0032127.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/negative-regulation-of-type-2-mitophagy-go1905090.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905090", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/negative-regulation-of-type-2-mitophagy-go1905090.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/intermembrane-lipid-transfer-protein-vps13-like-c-terminal-ipr056748.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056748", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/intermembrane-lipid-transfer-protein-vps13-like-c-terminal-ipr056748.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-13-n-terminal-domain-ipr026854.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR026854", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-13-n-terminal-domain-ipr026854.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], 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"NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q7Z7G8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF12624", "PF25033", "PF25036" ], "protein_name": "Intermembrane lipid transfer protein VPS13B", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "57ab7fe35951286a0d2db805059b997f0a9907e1c3ab82e61c5b3a2fc8103d61", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSIKPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYENLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKEGEIEDLTCHNKDMLGNITGSEDETRIDMQYPAQHKGQELYSQQDEEQPQGWVSWAWSFVPAIVSYDDGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFKLTEMQVESSYYSPQKVKSKEVLCWEQEGTTVEALMMGEPFFDCQIGFVGCRAMCLKGIMGVKDFEENMNRSETEACFFICGDNLSTKGFTYLTNSLFDYRSPENNGTRAEFILDSTHHKETYTEIAGMQRFGAFYMDYLYTMENTSGKGSTNQQDFSSGKSEDLGTVQEKSTKSLVIGPLDFRLDSSAVHRILKMIVCALEHEYEPYSRLKSDIKDENETILNPEEVALLEEYIPTRHTSVTLLKCTCTISMAEFNLLDHLLPVIMGEKNSSNFMNTTNFQSLRPLPSIRILVDKINLEHSVPMYAEQLVHVVSSLTQPSDNLLHYCYVHCYLKIFGFQAGLTSLDCSGSYCLPVPVIPSFSTALYGKLLKLPTCWTKRSQIAITEGIFELPNLTIQATRAQTLLLQAIYQSWSHLGNVSSSAVIEALINEIFLSIGVKSKNPLPTLEGSIQNVELKYCSTSLVKCASGTMGSIKICAKAPVDSGKEKLIPLLQGPSDTKDLHSTKWLNESRKPESLLAPDLMAFTIQVPQYIDYCHNSGAVLLCSIQGLAVNIDPILYTWLIYQPQKRTSRHMQQQPVVAVPLVMPVCRRKEDEVSIGSAPLAKQQSYQASEYASSPVKTKTVTESRPLSVPVKAMLNISESCRSPEERMKEFIGIVWNAVKHLTLQLEVQSCCVFIPNDSLPSPSTIVSGDIPGTVRSWYHGQTSMPGTLVLCLPQIKIISAGHKYMEPLQEIPFVIPRPILEEGDAFPWTISLHNFSIYTLLGKQVTLCLVEPMGCTSTLAVTSQKLLATGPDTRHSFVVCLHVDLESLEIKCSNPQVQLFYELTDIMNKVWNKIQKRGNLNLSPTSPETMAGPVPTSPVRSSIGTAPPDTSTCSPSADIGTTTEGDSIQAGEESPFSDSVTLEQTTSNIGGTSGRVSLWMQWVLPKITIKLFAPDPENKGTEVCMVSELEDLSASIDVQDVYTKVKCKIESFNIDHYRSSLGEECWSLGQCGGVFLSCTDKLNRRTLLVRPISKQDPFSNCSGFFPSTTTKLLDGTHQQHGFLSLTYTKAVTKNVRHKLTSRNERRSFHKLSEGLMDGSPHFLHEILLSAQAFDIVLYFPLLNAIASIFQAKLPKTQKEKRKSPGQPMRTHTLTSRNLPLIYVNTSVIRIFIPKTEEMQPTVEANQAAKEDTVVLKIGSVAMAPQADNPLGRSVLRKDIYQRALNLGILRDPGSEIEDRQYQIDLQSINIGTAQWHQLKPEKESVSGGVVTETERNSQNPALEWNMASSIRRHQERRAILTPVLTDFSVRITGAPAVIFTKVVSPENLHTEEILVCGHSLEVNITTNLDFFLSVAQVQLLHQLIVANMTGLEPSNKAAEISKQEQKKVDIFDGGMAETSSRYSGAQDSGIGSDSVKIRIVQIEQHSGASQHRIARPSRQSSIVKNLNFIPFDIFITASRISLMTYSCMALSKSKSQEQKNNEKTDKSSLNLPEVDSDVAKPNQACISTVTAEDLLRSSISFPSGKKIGVLSLESLHASTRSSARQALGITIVRQPGRRGTGDLQLEPFLYFIVSQPSLLLSCHHRKQRVEVSIFDAVLKGVASDYKCIDPGKTLPEALDYCTVWLQTVPGEIDSKSGIPPSFITLQIKDFLNGPADVNLDISKPLKANLSFTKLDQINLFLKKIKNAHSLAHSEETSAMSNTMVNKDDLPVSKYYRGKLSKPKIHGDGVQKISAQENMWRAVSCFQKISVQTTQIVISMETVPHTSKPCLLASLSNLNGSLSVKATQKVPGIILGSSFLLSINDFLLKTSLKERSRILIGPCCATANLEAKWCKHSGNPGPEQSIPKISIDLRGGLLQVFWGQEHLNCLVLLHELLNGYLNEEGNFEVQVSEPVPQMSSPVEKNQTFKSEQSSDDLRTGLFQYVQDAESLKLPGVYEVLFYNETEDCPGMMLWRYPEPRVLTLVRITPVPFNTTEDPDISTADLGDVLQVPCSLEYWDELQKVFVAFREFNLSESKVCELQLPDINLVNDQKKLVSSDLWRIVLNSSQNGADDQSSASESGSQSTCDPLVTPTALAACTRVDSCFTPWFVPSLCVSFQFAHLEFHLCHHLDQLGTAAPQYLQPFVSDRNMPSELEYMIVSFREPHMYLRQWNNGSVCQEIQFLAQADCKLLECRNVTMQSVVKPFSIFGQMAVSSDVVEKLLDCTVIVDSVFVNLGQHVVHSLNTAIQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFSVDHAGTFIRTIQYRGRTASLIIKVQQLNGVQKQIIICGRQIICSYLSQSIELKVVQHYIGQDGQAVVREHFDCLTAKQKLPSYILENNELTELCVKAKGDEDWSRDVCLESKAPEYSIVIQVPSSNSSIIYVWCTVLTLEPNSQVQQRMIVFSPLFIMRSHLPDPIIIHLEKRSLGLSETQIIPGKGQEKPLQNIEPDLVHHLTFQAREEYDPSDCAVPISTSLIKQIATKVHPGGTVNQILDEFYGPEKSLQPIWPYNKKDSDRNEQLSQWDSPMRVKLSIWKPYVRTLLIELLPWALLINESKWDLWLFEGEKIVLQVPAGKIIIPPNFQEAFQIGIYWANTNTVHKSVAIKLVHNLTSPKWKDGGNGEVVTLDEEAFVDTEIRLGAFPGHQKLCQFCISSMVQQGIQIIQIEDKTTIINNTPYQIFYKPQLSVCNPHSGKEYFRVPDSATFSICPGGEQPAMKSSSLPCWDLMPDISQSVLDASLLQKQIMLGFSPAPGADSSQCWSLPAIVRPEFPRQSVAVPLGNFRENGFCTRAIVLTYQEHLGVTYLTLSEDPSPRVIIHNRCPVKMLIKENIKDIPKFEVYCKKIPSECSIHHELYHQISSYPDCKTKDLLPSLLLRVEPLDEVTTEWSDAIDINSQGTQVVFLTGFGYVYVDVVHQCGTVFITVAPEGKAGPILTNTNRAPEKIVTFKMFITQLSLAVFDDLTHHKASAELLRLTLDNIFLCVAPGAGPLPGEEPVAALFELYCVEICCGDLQLDNQLYNKSNFHFAVLVCQGEKAEPIQCSKMQSLLISNKELEEYKEKCFIKLCITLNEGKSILCDINEFSFELKPARLYVEDTFVYYIKTLFDTYLPNSRLAGHSTHLSGGKQVLPMQVTQHARALVNPVKLRKLVIQPVNLLVSIHASLKLYIASDHTPLSFSVFERGPIFTTARQLVHALAMHYAAGALFRAGWVVGSLDILGSPASLVRSIGNGVADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAIAGIVDQPMQNFQKTSEAQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRHQPSDLHADQAPNSHVKYVWKMLQSLGRPEVHMALDVVLVRGSGQEHEGCLLLTSEVLFVVSVSEDTQQQAFPVTEIDCAQDSKQNNLLTVQLKQPRVACDVEVDGVRERLSEQQYNRLVDYITKTSCHLAPSCSSMQIPCPVVAAEPPPSTVKTYHYLVDPHFAQVFLSKFTMVKNKALRKGFP", "sequence_length": 4022, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "57ab7fe35951286a0d2db805059b997f0a9907e1c3ab82e61c5b3a2fc8103d61", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q7Z7G8.json", "taxon_id": "9606", "uniprot_accession": "Q7Z7G8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/cis-golgi-network-membrane-go0033106.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0033106", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/cis-golgi-network-membrane-go0033106.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/acrosome-assembly-go0001675.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0001675", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/acrosome-assembly-go0001675.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/golgi-reassembly-go0090168.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0090168", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/golgi-reassembly-go0090168.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/maintenance-of-lens-transparency-go0036438.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0036438", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/maintenance-of-lens-transparency-go0036438.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/slow-endocytic-recycling-go0032458.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032458", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/slow-endocytic-recycling-go0032458.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-13-n-terminal-domain-ipr026854.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR026854", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-13-n-terminal-domain-ipr026854.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-13-vps13-adaptor-binding-d-ipr009543.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009543", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-13-vps13-adaptor-binding-d-ipr009543.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vps13-like-middle-region-ipr056747.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vps13-like-middle-region-ipr056747.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vps13-vab-pf25036.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vps13-vab-pf25036.yaml" } ], "pfam_ids": [ "PF12624", "PF25033", "PF25036" ], "protein_name": "Intermembrane lipid transfer protein VPS13B", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAENTKSSIKPRRIQQAAPADPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKAINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYDNLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKDGETEDPPCLSKDTLANLTGTEEESRIDMQYPAPYKGQELYSQDYEEPQGWVSWAWSFVPAIVSYDDGEEDDLGTDPASIMHQQKAQTLKDPIVSVGFYCTKATVTFKLTEMQAENSYYSPQKVKSKEVLCWEQEGTTIEALMMGEPFFDCQIGFVGCRAMCLKGILGVKDFEEHMNRSETEACFFICGENLSTKGLTYLTNSLFDYRSPENNGTRAEFILDAAHHKETHTDIAGIQRFGAFYMDYLYTVEHSSGKGPTSQQDFPSGKNEDLGIVQEKSTKSLVIGPLDCRLDSSAVHRVLKMIVCALEHEYEPYSRLKPESKDEKETVLDPEEVSSLEEYIPTRHTSVTLLKCTCTVFMAEFNLLDCLLPVIMGGKNSSNVTNATNFQSLRPLPSIQILVDKINLEHSVPMYAEQLVHVVSSLNQPSDNLLHYCYVHCYLKVFGFQAGLTCLDHSGSYCLPAPIIPSFSTALYGKLLKLPALWTKRSQTVVTEGIFELPNLTIQATRAQTLLLQAIYQSWSHIGNVSSSTVNEALMNEVFPMTGVKSKNPLPTLEGSIQNVELKYCSTSLVKCASGTLGSIKICAKAPGDSGKEKLIPLLQGPSDTRDLHSSKWLNESRKPESLLAPDLIAFTIQVPQYMDYCHHSGAVFLCSVQGLAVNIDPILYTWVIYQPQKRANRHAQQQPVVAVPLVTSVNRRKEDELSIGSAPLGKQQSYQASEYASSPIKTKTVTESRPVSVPVKAVLRVHEECRSPEDKMKEFIAILWNAVKSLTLQLDVQSCCVFIPNDNLPSPSTIVSGDIPGTVRSWYHGQTSIPGTLVLCLPQIKIISAGHKYMEPLQEIPFVIPRPILEEGDAFPWTISLHHFSIYTLLGKQVTLSLVEPMGCTSTLAVTSQKLLPVGPDGRHSFVVCLHVDLESLEIKCSNPQVQLIYELADTMSKVWSKIQKRGNLSPSSVYPETVAGPIPGSPVWSSVGTAPPDTSTCSPSADIGTTTEGDSVQAGDDSPFSDSVTLEQTTSNIGGSSGRVSLWMQWVLPKATVKLFAPDLEKKGTEVCMVSELEDLSASIDVQDVYTKVKCKVESFSIDHYQSRPGEGWQSGHFEGVFLQCKEKPVTTTKLLDGAHQQHGFLSLTYTKAVTKNVRHKLTSRNERRSFYKLSEGLMDGSPHFLHEILLSAQAFDIVVCFPLLNAIASVFHTKLPKTQREKRKSSGQPMRTHTLTSRNLPLIYINTSVIRIFVPQTEETQSTVAVNQAAKEDTMVLKVGSIAMAPQADNPLGRSVLRKDIYQKALNLGILRDPGSEIEDRQYQIDLQSINIGTAQWDQLKPEKGSGSGGVPTESERNSQNPALEWNMASSIQRHQERRAILTPILTDFSVRITGAPAIIFTKIISQENLHMEEILVCGHSLEVNITTNLDFFLSVAQVQLLHQLIVANMTGLEPSTKATEISKQEQKKVDTFDGGTAETSSRYSGAQDSGIGSDSVKIRIVQIEQYSGASQHRIARPSHQSSIVKNLNFIPFDIFITASRISLMTYSSVALPKFKLPEQKEDGKTGRTFLNLAEVDSDVAKPNQACVSMVTAEDPLSSSTSFSSGKKVRVLSLESLHASTRSSARQALGVTVVRQPGRRGTGDLELDLFLHLIVSQPSLLLSCHHRKQRVEVSIFDAMLKGVPSDYTCTDPGKTLPEASDYNIVWLQTVPGETDSKSGIPPSLVTLHIKDFLNGPADIYLDVSKPLKANLSFTKLDQINHFLKKIKKAHSSAHSKETSTPSDSILNMDEPPVPKCYRGKLSKTKVHCDEAQKTSFQENIWRAISCFQKVSVHTTQIVVSMETVPHPHKPCVLASLSNLNGSLTVKAAQKVPGASLGSSFLLSIHDVLLKTSLKERSRILIGPFSATVNLEAKWCKHSGNPGPQQSIPKISMDLRGGLLQVFWGQEHLNCLALLHELFNGYLQEGKSEMPVPESAPQMPSPVEKTQAFKTEQSSDDLRTGIFQYVQDAESLKLPGVYEVLFYNETEESPGMMLWRYPEPRVLTLVRITPVPFNTTEDPDISTADLGDVLQVPCGLEYWDELQKVFVAFQEFSLSESKVCELQLPDINLVHDQKKLVSSDLWRIVLNNNQNTTDDQSSASESGSQSTCEPLVTPTALAACTRVDSCFTPWFVPSLCMSFQFAHLEFRLCHHLDQLGTASPQYLQPFISDKNVPSELEYMIISFREPNLHLRQWNSGPVCQEIKFSSQMDCKLLECRNVTMQTVVKPFGICGQMALSSDGVQKLLDSTVIVDSVLVNFGQHVVHSLNTAIQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFTVDHAGTFIRTIQYKGRTASLIIKVRALSGVQKQIIICGRQIICSYLSQSIELKVVQHYIGQDGQAVVREHFDCLTAKQKLPSYILENNELTELCVKAKGDEDWSRDVCLEPKASEYSTVIQVPTSNSSIIYVWCTVLTLEPNSQVQQRMIVFSPLFIMRSHLPDPIIIHLEKRSLGLSETQIIPGRGQENPLQNVEPDLVHHLTFQAREEYDPSDCAVPISTALIKQIATKIQPGGTVNEMLDEFYGPEKSQEPTWPYSNKDSDRNEQLSQWDSPMRVKLSIWKPYVRTLLIELLPWALLINQSKWDLWLFEGEKIVLQVPAGKIIIPPNFQEAFQIGIYWENTNTVHKTLAIKLVHNLTSPKWKDGGNGEVVTLDEEAFVDAEIRLGAFPGHQKLCQFCISSMVQHGIQVIQIEDKTTVINNTPYQIVYKPHLAISNSYSGKEHCHVPDSATFSICPGGEHPAVRSSSLPCWDVTPAVGSSELDTATLQKQILLGFSPVPGADSAQCWSLPAIIGGEFPRQSVAVPFGTGRENGFCTRAIALTYQEHLGVTYITLSEDPSPRVVFHNRCPVPMLMKENIRDIPKFDVYCKKIPPESSVHHELYHQIISYPDCKTKDLLPSLFLRIDSMEEMTAEWSDPVDINSQGTQVVFLTGFGYVYVDIAQQCGTVFIILAPEGKAGPIFTSTSRALERMVTFRMFITQLSLAVSDDLTHQAPSELLRLTLDNVFLHVSPVPALLPGEEPPSSFFQLYGVEVYCGDLQLDNQLYNKSNFHFAVLVCQGERTDPAQYSRVQSLLVSSKALEEYKENCFIKLCLTVSEGKDILLDVSEFTFELKPARLYVEDTFVYYIKTLFDTYLPPSRMSGHHAQLFTGQQVLPVQVTQHAKALVNAVKLRKLLIQPVNLLISIHASLKLYIASDHTPLSFSVFERGPVFTTARQLVHALAMHYAAGALFRAGWVVGSLEILGSPASLVRSIGNGISDFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGALTSITNLATSLARNMGRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAIAGIVDQPMQNFQKTSETQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRCQPTHLYADQAPNSHVKYVWKMLQSLGRPEVHMALDVVLVRGSGQEHEGCLLLTSEVLFVVSISEDTQQQAFPITEISCAQDTKQNNLLTVQLKQPRVASDVEIDGARERLSEQQFKRLVDYIAKTSCHLAPSCSSMQTCSVVAVEPPPATVKTYHYLVDPHFAQVFISKFTMVKNKALRKGFS", "sequence_length": 3993, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5eac79e2888e62fc564678e36d7317ae43c193bc3ee186cc61e9e8bbcbd5e5a4", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q80TY5.json", "taxon_id": "10090", "uniprot_accession": "Q80TY5", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/dense-core-granule-membrane-go0032127.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0032127", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/dense-core-granule-membrane-go0032127.yaml" }, { "cited_uniprot_accession": 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vps13-like-middle-region-ipr056747.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vps13-c-pf25037.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25037", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vps13-c-pf25037.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vps13-vab-pf25036.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vps13-vab-pf25036.yaml" } ], "pfam_ids": [ "PF12624", "PF25033", "PF25036", "PF25037" ], "protein_name": "Intermembrane lipid transfer protein VPS13C", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVLESVVADLLNRFLGDYVENLNKSQLKLGIWGGNVALDNLQIKENALSELDVPFKVKAGQIDKLTLKIPWKNLYGEAVVATLEGLYLLVVPGASIKYDAEKEEKSLQDIKQKELCRIEEALQKAAEKGAHSGEFMYGLENLLYKDVKPGRKRKKHKKHFKKRFKGLDRSKDKPKEAKKDTFLEKLATQVIKNVQVKITDIHIKYEDDITDPERPLSFGVTLREFSLLTTNEHWTPCILNEAEKIIYKLVKLDSLSAYWNVGCCMSYRGSREHILEQLKREILTSTNIPPDHQYIFQPISASAKLYMNPGAESELKTPKLDGNVEVQNIAIELTKPQYLSMIDFLESLDYMVRNAPYRKYKPCLPLHTNCRQWWKYAIDSVLEVHIRRYTQPWSWSNIKNHRQLLKSYKMAYKTKLTQAKVSEEIQKQIQDLEKSLDVFNIILVRQQAQVEVIHSGQKLRKKSAEAGEKRGWFSGFWGKKESKKRDEESSVPETIDDLMTPEEKDKLFTAIGYSENAYNLALPKQYVAHILTLKLVSTSIIIRENRNVPEILRVQIIGLGTQVSQRPGAQALKIEAKLEHWYVTGLRQQDIVPSLVASIGDTTSSLLKIEFETNPENSPADQTLIVQSQPVEVIYDAKTINAVVEFFQSNKGLDLEQITSATLMKLEEIKERTATGLTHIIETRKVLDLRINLKPSYLIIPQTGFHHEKSNLLILDFGTFQLNSKDQGAQKTANASLEEIIDKAYDKFDVEIRSVQLLFAKAEENWKKCRFQHPSTMHILQPMDIHVELAKAMVEKDVRMAKFKVSGGLPLMHVRISDQKIKDALCLINSIPLPQKSSTPSPERQVASIPVLSGGTKALLGTSLLLDGVESESDEEFFDAEDGDSQAARTVKASELKKAAEVPNEELVSLLLKFEIKEVVLELTKQQKEEETILVFNVTQLGTEATMRTFDLTAVSYLRKISLDYHDIKGSRKKPIHLISSSDRPGLDLLKVEYIKVDRNGPSFQTTFEKTEQTVKVAFSSLNLLLQTQALLSSLNYLTTVIPSDSQNTGVAKEVQAMPEKQKNSPLQKVMVPSRDSDVIGFRLFAKLNAFCVTVCDEKSNIAEIKIQGLDSSLSLQSKKQSLFARLENIIVTDVDPKTIHKKAVSIVGNEVFRFNLDLYPDATEGDSYTDMSTVDGVVALHVGCIQIVYLHKFLMSLLSFLNNFQVAKEALSAATAQAAEKAATSVKDLAQRSFRVSVDIDLKAPVIVIPQSSLSTNAVVVDLGLIRVHNRFSLVSGEDTANPPVIDKMEVQLTKLKLSRTAIQPGTSHPDIQLLHPINLEFFVSRNLAANWYHKVPVVEIKGRLDSMNVSLNQEDLNLLFRILAENLGEATEDLDKGKPRIQERGETKACREVSTPQDVHTTQGVPAARVEETRPVDIINVLLNFEIKEVVVTLMKKAERKGSPFHELKILHLGMEAKVKAHDMTAAAYLRNISMRCFHFPDSKGEPLRIVNTSDVSDGILLKLLFIKADSDGPDFKTIHDNTKQKLKVSFSSLDLVLHLEALLSLMDFLSSAIPSSDSSSSEKEPELKPLVGESRSLAIRAVPSSYEGDAFDLKITAELNAFNIFICDQKSNIAEIKIHGMDASISVKPKQTDVFARLKNIIVMNVDSLSIHKKAVSILGDEVFRFQMSLYPDATEGENYGDMSKVDGRLSLKVGCIQIVYVHKFFMSLLSFLNNFQAAKEALSTATVQAAERAASSVKDLAQKSFRLLMDIDLKAPVITIPQSSVSPNVVIADLGLIRVENKFSLVSVEQLALPPVADEMSIQLTQLKLARTVLQADSPQHDVEILKPVNMLLCIQRNLSAAWYTQIPGMEIKGELKPMQVALSQDDLTVLMKILLENLGEASSQPSPTQYAQEAARVKRDTRSGPDYLKEQELADPKPPGDQTVTLQFDFHFDSLSIILYNSDSSQEPRLSFHNDSFRLGELTLHLMASAGKMFKDGSMNVSLKLKTCTLDDLREGIERATSRMIDKKNDQDNNSSMIDISYSQDKNGSQVDAVLDKLYVCASVEFLMTVADFFIKAMPQSPENIAKEIQIPSRQTAAGRVKMEKDDSVRPNMTLKAMITDPEVVFVASLTKADAPALTASFQCNLSLSTSKLEQMMEASVRDLKVLACPFLRERRGKSITTVLQPCSLFMEKCTWASGKQNINIVVKEFVIKISPIILNTVMTIMAAMSPKTKEDEWKDTPKETDNLWAVKSITDYNSWFLGVDMATEVTENFRDSEHPSIEENCVVAVESVQVTLECGLGHRTVPLLLAESKFSGNIKNWTSLMAAAADMTLEVHYYNETHAVWEPLIERVEGNKPWSLKLNVKKNPIQDKSLMPGDDFIPEPQTAVHISSGATMNITISKSCLNVFSNLAKGFSEGAASTFDYSLKDRAPFTVKNALGVPMKVQPNRNLKVMGSPEKSDIYDVGAGQHLELDYASLEPSRQGKLSILSRQESSLFTLTFVPYGYTEVASVPVARPGRRLYNVRNPSASHSDSVLVQIDATEGNKVVTLRSPLQIKNHFSIAFIIYKFVKNVKLLERIGIARPEEEFHVPLDSYRCQLYVQPAGGLEQQYTHSSTYISWKEELHRSREVRCMLQCPAVEVSFLPLIVNTVALPDELSYIGAHGEDWDPAYVIHLYPPLTLRNLLPYSLRYLLEGTAETHELAEGSSADVLHSRISGEIIELVLVKYLGKNWNGHFRICDTLPEFFLVCFSSDTAEVMTVDLSVHVRRIGCRMELSVFSPYWLINKTSRVLQYRSEEIHVKHPADFRDIILFSFKKKNIFSKNKVQLKISTSAWSNGFSLDTVGSYGCVKCPATNMEYLVGVSIKMSSFNLSRVVTLTPFCTVANKSSLDLEVGEIASDGSIPTNKWHYVASSECIPFWPENLSGKLCVRVVGYEGSSKPFFYNRQDNGTLLSLEDLNGGILVDINTAEHSTVITFSDYHEGSAPALIMNHTQWDVLTYKQSGSQEELVLLPGETRLFAWADPTGIRKLTWNYAANFGEHDLLKDECGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQADHEVALSLHSLGLSLVNNENKQEVSYVGITSSGVVWEMKPKQKWKPFSQKQIMSLEQAYSKRLASQDRGWVKLDSNFEVNFDKVPMEMRLPIRCPIKRDFLSGIQVEFKQSPHQRSLRARLYWLQVDNQLPGTMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMVLIQEMALKVDQGFLGAVISLFTPTTDPEAERKRTKLIQQDIDALNTELMESSMTDMSILSFFEHFHISPVKLHLSLSLGSGGEESDKEKQEMIAIHSVNLLLKSIGATLTDVDDLIFKLAYYEIRYQFYKRDQLMWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYEPFQGAVQGPEEFAEGLVIGVRSLVGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAVARPTGGIIDMASSTFQGIQRVAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLENHIKKLEGEAYQFHCAVPGNKRAVLMITNRRALFIKEVEILGHMSVDWQCLFEDFVCPPEVSENLLKISVKEQGLFHKKDSANIGHLRKIYLKDPITAKRAFDAIESAQSARQQQKLMRQSSVKLLRPQGPS", 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"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/intermembrane-lipid-transfer-protein-vps13-like-c-terminal-ipr056748.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-13-n-terminal-domain-ipr026854.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR026854", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-13-n-terminal-domain-ipr026854.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-13-vps13-adaptor-binding-d-ipr009543.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009543", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-13-vps13-adaptor-binding-d-ipr009543.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vps13-like-middle-region-ipr056747.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vps13-like-middle-region-ipr056747.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vps13-c-pf25037.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25037", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vps13-c-pf25037.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vps13-vab-pf25036.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vps13-vab-pf25036.yaml" } ], "pfam_ids": [ "PF12624", "PF25033", "PF25036", "PF25037" ], "protein_name": "Intermembrane lipid transfer protein VPS13A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVFESVVVDVLNRFLGDYVVDLDTSQLSLGIWKGAVALKNLQIKENALSQLDVPFKVKVGHIGNLKLIIPWKNLYTQPVEAVLEEIYLLIVPSSRIKYDPLKEEKQLMEAKQQELKRIEEAKQKVVDQEQHLPEKQDTFAEKLVTQIIKNLQVKISSIHIRYEDDITNRDKPLSFGISLQNLSMQTTDQYWVPCLHDETEKLVRKLIRLDNLFAYWNVKSQMFYLSDYDNSLDDLKNGIVNENIVPEGYDFVFRPISANAKLVMNRRSDFDFSAPKINLEIELHNIAIEFNKPQYFSIMELLESVDMMAQNLPYRKFKPDVPLHHHAREWWAYAIHGVLEVNVCPRLWMWSWKHIRKHRQKVKQYKELYKKKLTSKKPPGELLVSLEELEKTLDVFNITIARQTAEVEVKKAGYKIYKEGVKDPEDNKGWFSWLWSWSEQNTNEQQPDVQPETLEEMLTPEEKALLYEAIGYSETAVDPTLLKTFEALKFFVHLKSMSIVLRENHQKPELVDIVIEEFSTLIVQRPGAQAIKFETKIDSFHITGLPDNSEKPRLLSSLDDAMSLFQITFEINPLDETVSQRCIIEAEPLEIIYDARTVNSIVEFFRPPKEVHLAQLTAATLTKLEEFRSKTATGLLYIIETQKVLDLKINLKASYIIVPQDGIFSPTSNLLLLDLGHLKVTSKSRSELPDVKQGEANLKEIMDRAYDSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELIESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQISQKIIPLLELPSVSEDDSEEEFFDAPCSPLEEPLQFPTGVKSIRTRKLQKQDCSVNMTTFKIRFEVPKVLIEFYHLVGDCELSVVEILVLGLGAEIEIRTYDLKANAFLKEFCLKCPEYLDENKKPVYLVTTLDNTMEDLLTLEYVKAEKNVPDLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTINYLHNILPQSEEKSAPVSTTETEDKGDVIKKLALKLSTNEDIITLQILAELSCLQIFIQDQKCNISEIKIEGLDSEMIMRPSETEINAKLRNIIVLDSDITAIYKKAVYITGKEVFSFKMVSYMDATAGSAYTDMNVVDIQVNLIVGCIEVVFVTKFLYSILAFIDNFQAAKQALAEATVQAAGMAATGVKELAQRSSRMALDINIKAPVVVIPQSPVSENVFVADFGLITMTNTFHMITESQSSPPPVIDLITIKLSEMRLYRSRFINDAYQEVLDLLLPLNLEVVVERNLCWEWYQEVPCFNVNAQLKPMEFILSQEDITTIFKTLHGNIWYEKDGSASPAVTKDQYSATSGVTTNASHHSGGATVVTAAVVEVHSRALLVKTTLNISFKTDDLTMVLYSPGPKQASFTDVRDPSLKLAEFKLENIISTLKMYTDGSTFSSFSLKNCILDDKRPHVKKATPRMIGLTVGFDKKDMMDIKYRKVRDGCVTDAVFQEMYICASVEFLQTVANVFLEAYTTGTAVETSVQTWTAKEEVPTQESVKWEINVIIKNPEIVFVADMTKNDAPALVITTQCEICYKGNLENSTMTAAIKDLQVRACPFLPVKRKGKITTVLQPCDLFYQTTQKGTDPQVIDMSVKSLTLKVSPVIINTMITITSALYTTKETIPEETASSTAHLWEKKDTKTLKMWFLEESNETEKIAPTTELVPKGEMIKMNIDSIFIVLEAGIGHRTVPMLLAKSRFSGEGKNWSSLINLHCQLELEVHYYNEMFGVWEPLLEPLEIDQTEDFRPWNLGIKMKKKAKMAIVESDPEEENYKVPEYKTVISFHSKDQLNITLSKCGLVMLNNLVKAFTEAATGSSADFVKDLAPFMILNSLGLTISVSPSDSFSVLNIPMAKSYVLKNGESLSMDYIRTKDNDHFNAMTSLSSKLFFILLTPVNHSTADKIPLTKVGRRLYTVRHRESGVERSIVCQIDTVEGSKKVTIRSPVQIRNHFSVPLSVYEGDTLLGTASPENEFNIPLGSYRSFIFLKPEDENYQMCEGIDFEEIIKNDGALLKKKCRSKNPSKESFLINIVPEKDNLTSLSVYSEDGWDLPYIMHLWPPILLRNLLPYKIAYYIEGIENSVFTLSEGHSAQICTAQLGKARLHLKLLDYLNHDWKSEYHIKPNQQDISFVSFTCVTEMEKTDLDIAVHMTYNTGQTVVAFHSPYWMVNKTGRMLQYKADGIHRKHPPNYKKPVLFSFQPNHFFNNNKVQLMVTDSELSNQFSIDTVGSHGAVKCKGLKMDYQVGVTIDLSSFNITRIVTFTPFYMIKNKSKYHISVAEEGNDKWLSLDLEQCIPFWPEYASSKLLIQVERSEDPPKRIYFNKQENCILLRLDNELGGIIAEVNLAEHSTVITFLDYHDGAATFLLINHTKNELVQYNQSSLSEIEDSLPPGKAVFYTWADPVGSRRLKWRCRKSHGEVTQKDDMMMPIDLGEKTIYLVSFFEGLQRIILFTEDPRVFKVTYESEKAELAEQEIAVALQDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKARWKPMSVKHTEKLEREFKEYTESSPSEDKVIQLDTNVPVRLTPTGHNMKILQPHVIALRRNYLPALKVEYNTSAHQSSFRIQIYRIQIQNQIHGAVFPFVFYPVKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKVLIQEMDLRLDLGFIYALTDLMTEAEVTENTEVELFHKDIEAFKEEYKTASLVDQSQVSLYEYFHISPIKLHLSVSLSSGREEAKDSKQNGGLIPVHSLNLLLKSIGATLTDVQDVVFKLAFFELNYQFHTTSDLQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKGGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLRPPRFFNEDGVIRPYRLRDGTGNQMLQVMENGRFAKYKYFTHVMINKTDMLMITRRGVLFVTKGTFGQLTCEWQYSFDEFTKEPFIVHGRRLRIEAKERVKSVFHAREFGKIINFKTPEDARWILTKLQEAREPSPSL", "sequence_length": 3174, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ecbcaceb82c8fedbac558e257d036b8ee0539dae6d07b496caec829e3a27f5dd", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96RL7.json", "taxon_id": "9606", "uniprot_accession": "Q96RL7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/ricin-b-type-lectin-domain-beta-trefoil-fold-found-in-vacuolar-protein-cd23453.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd23453", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/ricin-b-type-lectin-domain-beta-trefoil-fold-found-in-vacuolar-protein-cd23453.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/uba-domain-found-in-vacuolar-protein-sorting-associated-protein-13d-vp-cd14306.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd14306", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/uba-domain-found-in-vacuolar-protein-sorting-associated-protein-13d-vp-cd14306.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/intermembrane-lipid-transfer-protein-vps13d-uba-domain-ipr041969.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR041969", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/intermembrane-lipid-transfer-protein-vps13d-uba-domain-ipr041969.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-13-n-terminal-domain-ipr026854.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR026854", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-13-n-terminal-domain-ipr026854.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-13-vps13-adaptor-binding-d-ipr009543.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR009543", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vacuolar-protein-sorting-associated-protein-13-vps13-adaptor-binding-d-ipr009543.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/vps13-like-middle-region-ipr056747.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR056747", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/vps13-like-middle-region-ipr056747.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/vps13-vab-pf25036.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25036", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/vps13-vab-pf25036.yaml" } ], "pfam_ids": [ "PF12624", "PF25033", "PF25036" ], "protein_name": "Intermembrane lipid transfer protein Vps13D", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MLRDLITWVLNTYLGKYLENLNSAQLSVALLSGEVELENIPIRKDALRSFNLPVEVTAGSIRKIKLQIPVRQFRTSPWCISIEGLFCIICPKNLDNWDYEKEKLQDLEYKLAVLDTAEAGWRSEKGKQMESYYFSSYNNWLKYGTNMATNIIDNIELKISDVHFRFEDIVDTGKSKICTGIKIGSLTAQSCDCDWTNGSYKMNNNEMNYKLVELKELSVYWDLLHEDIKCQSYSNQEILEKMHSTCELRSHNFIIKPICATARWKRDKCQQVIRTKDKPRVSCELLVPEVVIDISKVQRLQMLDKLSEIRQVKEVRQYRLKRPTCTVESNPIAWWKYATICHGFDFKKNEEKWLMLKENLRYMLLYKSIILNPNENLSAADKEFKAYIESDRKISDLTIMRRICFEKVFTKGFAFESQNEQGKNMLFHWFPNWMGWYANSPSTPNNEQDESLKHLEDDILVALENSLQNSSDLKSDAVFGHFSIKLLKGLVILQTEDKLNDGRNKSMEMQFNNFSAYLQLSPQLTSYTVGISLQEVYLIDKTSSDTMHNYLIKPQTGNTATPNQLVKNAALQEDILFQLQYENCNHLRFQLNIKSKGLDLIYNEDAIQWLLDFLADSNSFKYSPRNRVAKKTDFMKNWNEMFSGNEVNRKIWMFEIEIFAPRIIFLENYKVSNSLMVLLDFGKLEMRKMEVKRVIPVIESAVTENTSDDDETYLTPCSTPPASEKSGSESPTLLENPKTESFLNKNVQLEYVLHNKIYDKYLINFTNLQVLVCKYEERWQACLKTSSNFHLIDKFNINLTLEQRNIFTVDPEYPSFMLFGTCPTILIHGNEELINNCCNIMKPIIKASKEMENIYRGGNTIYASERIKNLAEDDRSRVVIEFVMDQLVIEMQSTERSIAELQIIGARAGLTKEPHETNISMSVHGLLLVDAIQSFGPDFELLVASHRHVGMDSLSGSLKHSAIVSPTSPGSPNFFDRATSPHMITKAVQNIKMGDRSTEFCDDEDSTALISVDIKIVPPNESNSMQLHTTSITFNSLDIIANQDTIIEILNFAKRTLLAQNIFPSESPESPKEATEAPVDVVDQVDHKSHNEIFFDFFRLNILLLYTIKRDKFNVGRKVGTVTLTEAKINASFQSDLSIIGSLGGIQVIDITSEAFCHPRILSVGRDQILRASDTNKQTVLSQLSNEIYSNNYNEETKSDESDAISFQSHWSDKTTCTFQMRMASASYTHCPRFLRDVNACITYFKRSLREFATSIGNKATDMAKEFVQQVRAVEQIGPVYPQRNRQDNWLDIIISSPIIILPISNTSTNVLIANLGKISCSNAVKCDSDEFNESYTIEIKNTYVYSLNIDEGEYSFNVHPAKNKDAIPILHDTAITLQLYAGYSDDNDEDKQLNRFSIKGSMVEALKVSLNRKQYELLLESIRYATNFSNEVLNESDELDQNGDIEPTANIDAESIISTTIQFSVPVFQINLQNEYHNDLINLTFKNFNVKHISKGFDKDVEVVLKSVLMEDLKSDLTSPFRNMVTSVDLEQKIKKNEMTSSSCPDLPSYCNSLKNRSSSVPSCFYNHMQVKVFGGDQKYTSSNKNELGKKKESQTLVIYKSHTGRSAQNGKLEQTSSIQFNCLNLAICVERWYTIFDFFGLVSVDNVNEKYPEEMKLVEKHIDKVCSKLKVSIRSFNFTLIRNESLLSRVNVSNAVFMILQDPYSKIVEGCLGSVSVNDLTKYGNIYKQKFLTSGTEALNFVYKKKLVDLEALNTLDTDSTLRINMSAVHYIHTKRFSTELHVFVKDLLQLQTPVIRKLKKHGSEQNMRPSKMKLVIQADSPVIVLPSSYNRNEVIIAYLGQFSLKNSFHFASDNNIISKMSATPSKDEILDVMRIDLVNINLFSGERSSMKAKADQEKDRIIIADMNFLRLGQPFFNESCFLHLQLERNLSADAHRVCPDISVQGTFSKLSGIINIQQYKLIRSFLNNNIGEQTDDIYMNYHNNSCTSIERLSTINLMPKNEVSKIVSILISIRILLEDVSLLLALNTSQSAAIEPLACIHFLKSTLEIDLFSDGSQDIDLISSNILIVDERNESDKSNENVFKNILEPSKKEVRIENSVQVEVHCRKKATFSKYTIMLNNMRVFALLSFLDQLKSYLQEDSPAPVVNNAANQIAQKPQIDTSISTEYVVNITDSEIIFAEECSRLDSNAIILKSTTVICYKPNSNIVPLSLDINHLEIFSCTLDAEEESALSIIDPFTLIIELRSNCLNILIQKHLNIRLSYVDVKLFSRMARLLPTQTSRPKNVISKADSDLEKAAPLVAMGFEISDCLYAMQINNWRINDAAIWLSQQKQNTYRNPALEMKTAVVDASLISVFIIDDCMDADVPLLEVSLSKFLLNFTFQTQDPNPKETNIRHYSLGNIDTEVSVNYYNRRLSGWEPVAETWESNLNWKYTKGHLDNKKRFEIGISSKQMLKLNVTSTFIELFHMVLKNWTNDFNDNGAKNFRQRSPFIPFALQNLSGTPLLFKPIYAPLGDLTRSDLQQVELIKNWYSVQPNETKTFDFSQKSKLRHVHSHQLNLHQIFVQIHGWTLIGPISVDKVGMFFRTTKLDSQFLTKSRIVFDISLIGSAQKLIKVKSSLGVINKLDRNVFLKMTLKGTHSDGLSSISVIKPNDELSVPLKFIDASLYVAHNTSESDAYEDTGFSNEEILWKACGKDDTRQLLAGYDTNKSILYTFVNISREIYHCKEQNLPGHKITLLPPLKINNMLCCDLMFKIHEHATGRINSSESVNIYNVNICQPLNLSITLDNFQLSGQLKIPVSHRGVIEPKLKLIDIQKRELHVRVSIQSVPGKGMELYISAPVWIINKTGLPLIYKQEGTSHTAAGQFEEHETARQVAPLMFSFSDQEGSPALVLRLGKAYGSNNMWCKSFSTHKDLADRDLRAENTKGSYAIGISVRRGRGLYACTTFVTLSPRFHLHNRSGYKLEFMQLCDIVNYDRPDPRKIISAPVDCNFAFHWPNWDQEQIICVRIPEIECCCWSKGIPIKDVQSLYINVRNEWGEMFFLRLEIISKDATFILLFTDARTLPPPIRIDNCSEVVINFSQLRSKPVWITPVRPQSSLSYVMDDPLGQQILLMEAPGGNMIEFPINNKNNIKKTLTYTNFIYIAFQGTFERSNEEENTHRQLVLGVRGKKVVIVEKNSGDRSQLWLMNSNGQLEHEGSTPPIQTNDANAVRLVLDLEKAPNPMEFTNLVVRTPNKQRVTTQTWRFENGRLMCHANMCVQSRFGESGLKPNYEAVVGRTENRASSSKQIPIGQHIVAQKLRPGSGQLELSTKMDGPISTIEICDIKIKQNSVFLTPDLLWMHASLNNRQITDKGKVSFVHEYLINVELVKGIGISIIARKPCEEIMFISLDHINCDIVQSALENSLDLNIAYIQIDNQLLDAVSPIALHTQTSNDLEETQNAVVLKLKMLPSPNKNAIIFKYLTLDLKPSTASLEEKLILKVASFLGYGKINRQNLSVQYQFENTDDKPFLQDMKRYYFENLSIGATQVRLSAFTSSKLPVELHETKKALGLTLIKFEDALIELDRYSDKLHFETMDVYRKELKKHYINQVKWHAAAILGSVDFLGNPLGFANDLSEGVSGLIFEGSVKSLVKNVTHGISNSTAKLTETLSDSLGKVVLDDHDNETRQRILELQSNTSGGHLAAGLKGLGFGLLGGVTSIVRHTYDGATSDGVPGFLSGLGKGLVGTVTKPIIGVLDLASETASAVRETSRDSHRNAPERKRLPRCVTGAPGGLLPLYSNRQSKGQQYLYLINQKNFSEKIISYEPNLWSDKEARLRLLVSTEYVRIFSLSDANPTIMFECHVSEILSCHPVVTNAGTTPTTSSRASASHYIEISTNLPKITRPRIRCRSEECAEAASRCINYAKSVFDEREHAVL", "sequence_length": 3919, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bcb3eac39a702b5e9a472c22ae1ab8376560c864e80109b5c2a4084780a3fa19", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VU08.json", "taxon_id": "7227", "uniprot_accession": "Q9VU08", "uniprot_release": "2026_03" } ], "pfam_id": "PF25036", "short_name": "VPS13_VAB", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25042", "short_name": "DUF7787", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Acanthamoeba polyphaga mimivirus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": 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"MPRRRKNLGGNPFRKTANPKEVVVSSVASREEPTTTLPSMGETKVDQEELFTSISEIFSDLDPDVVYLMLSECDFKVENAMDCLLELSATDTKIEESSSQSFVASENQVGAAESKIMEKRPEEESEDSKMDSFLDMQLTEDLDSLIQNAFEKLNSSPDDQVYSFLPSQDVNSFNDSSEFINPDSSNMTPIFSTQNMNLNGENLENSGSTLSLNPLPSHSVLNESKCFIKDNTLALESNYPEDSLLSSSLNVASDSIAGCSSLNQKQKELLESECVEAQFSEAPVDLDASEPQACLNLPGLDLPGTGGDQKSTRVSDVFLPSEGFNFKPHKHPELPTKGKDVSYCPVLAPLPLLLPPPPPPPMWNPMIPAFDLFQGNHGFVAPVVTTAAHWRSVNYTFPPSVISHTSPTKVWRNKDGTSAYQVQETPVSQVVRKKTSYVGLVLVLLRGLPGSGKSFLARTLQEDNPSGVILSTDDYFYINGQYQFDVKYLGEAHEWNQNRAKEAFEKKISPIIIDNTNLQAWEMKPYVALSQKHKYKVLFREPDTWWKFKPKELARRNIHGVSKEKITRMLEHYQRFVSVPIIMSSSVPEKIERIELCAYSCEDRSTSPRDDEDIISEKEENILSLSLKHLEFTEEKNLDVTKETMLPENVAYLSNADLNKRRKEISDMNPSIQSALILETPHMYFSDSESKLQATDKSENEQIEMVAVKGYSKTDTDSSMERVSPSTCCSENNQEDCDLANSGPLQNEKSSPGEIVEERATVTKKAFGKQKSKSTLEKFPRHELSNFVGDWPVDKTIGQRTKRNRKTEKTSSVQSDKKYNYPQSHKLVNSVSVNTDCVQQRGSPHESVEDGRKSQCDDASEPLNSYKYDAYKNIDKNSFNIMGDWPSSDSLAQREHRSRMPKTGLSEPNLEIGTNDKMNEISLSTAHEACWGTSSQKLKTLGSSNLGSSEMLLSEMTCESQTCLSKKSHGQHTSLPLTFTNSAPTVSGVVEPQTLAECQEQMPKRDPGKEVGMCTQTEPQDFALLWKIEKNKISISDSIKVLTGRLDGFKPKVFNINTKSDVQEAIPYRVMYDKSTFVEESELTSADESENLNILCKLFGSFSLEALKDLYERCNKDIIWATSLLLDSETKLCEDTEFENFQKSCDGSQIGPFSLGLNLKEIISQRGTLENSNSPVPEFSHGIGISNADSQSTCDAERGNSEQAEMRAVTPENHESMTSIFPSAAVGLKNNNDILPNSQEELLYSSKQSFPGILKATTPKDMSETEKNLVVTETGDNIHSPSHFSDIFNFVSSTSNLELNEEIYFTDSLEIKRNENFPKDYVKFSDEEEFMNEDEKEMKEILMAGSSLSAGVSGEDKTEILNPTPAMAKSLTIDCLELALPPELAFQLNELFGPVGIDSGSLTVEDCVVHIDLNLAKVIHEKWKESVMERQRQEEVSCGKFMQDPSLVGHTGLDNPEQKSSQRTGKKLLKTLTASEMLPLLDHWNTQTKKVSLREIMSEEIALQEKHNLKRETLMFEKDCATKLKEKQLFKIFPAINQNFLVDIFKDHNYSLEHTVQFLNCVLEGDPVKTVVAQEFVHQNENVTSHTGQKSKEKKPKKLKETEETPSELSFQDFEYPDYDDYRAEAFLHQQKRMECYSKAKEAYRIGKKNVATFYAQQGTLHEQKMKEANHLAAIEIFEKVNASLLPQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVMLK", "sequence_length": 1770, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "48ed309988caecbf0d91f49d2a693e04bf5f69be64bfba9bf9cd0ad2182bcdd1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q86UW6.json", "taxon_id": "9606", "uniprot_accession": "Q86UW6", "uniprot_release": "2026_03" } ], "pfam_id": "PF25125", "short_name": "DUF7817", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/aaa-33-pf13671.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF13671", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/aaa-33-pf13671.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf1771-pf08590.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF08590", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf1771-pf08590.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7816-pf25124.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25124", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7816-pf25124.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7817-pf25125.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25125", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7817-pf25125.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7818-pf25126.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25126", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7818-pf25126.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q86UW6", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01713", "PF08590", "PF13671", "PF25124", "PF25125", "PF25126", "PF28512" ], "protein_name": "NEDD4-binding protein 2", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "48ed309988caecbf0d91f49d2a693e04bf5f69be64bfba9bf9cd0ad2182bcdd1", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MPRRRKNLGGNPFRKTANPKEVVVSSVASREEPTTTLPSMGETKVDQEELFTSISEIFSDLDPDVVYLMLSECDFKVENAMDCLLELSATDTKIEESSSQSFVASENQVGAAESKIMEKRPEEESEDSKMDSFLDMQLTEDLDSLIQNAFEKLNSSPDDQVYSFLPSQDVNSFNDSSEFINPDSSNMTPIFSTQNMNLNGENLENSGSTLSLNPLPSHSVLNESKCFIKDNTLALESNYPEDSLLSSSLNVASDSIAGCSSLNQKQKELLESECVEAQFSEAPVDLDASEPQACLNLPGLDLPGTGGDQKSTRVSDVFLPSEGFNFKPHKHPELPTKGKDVSYCPVLAPLPLLLPPPPPPPMWNPMIPAFDLFQGNHGFVAPVVTTAAHWRSVNYTFPPSVISHTSPTKVWRNKDGTSAYQVQETPVSQVVRKKTSYVGLVLVLLRGLPGSGKSFLARTLQEDNPSGVILSTDDYFYINGQYQFDVKYLGEAHEWNQNRAKEAFEKKISPIIIDNTNLQAWEMKPYVALSQKHKYKVLFREPDTWWKFKPKELARRNIHGVSKEKITRMLEHYQRFVSVPIIMSSSVPEKIERIELCAYSCEDRSTSPRDDEDIISEKEENILSLSLKHLEFTEEKNLDVTKETMLPENVAYLSNADLNKRRKEISDMNPSIQSALILETPHMYFSDSESKLQATDKSENEQIEMVAVKGYSKTDTDSSMERVSPSTCCSENNQEDCDLANSGPLQNEKSSPGEIVEERATVTKKAFGKQKSKSTLEKFPRHELSNFVGDWPVDKTIGQRTKRNRKTEKTSSVQSDKKYNYPQSHKLVNSVSVNTDCVQQRGSPHESVEDGRKSQCDDASEPLNSYKYDAYKNIDKNSFNIMGDWPSSDSLAQREHRSRMPKTGLSEPNLEIGTNDKMNEISLSTAHEACWGTSSQKLKTLGSSNLGSSEMLLSEMTCESQTCLSKKSHGQHTSLPLTFTNSAPTVSGVVEPQTLAECQEQMPKRDPGKEVGMCTQTEPQDFALLWKIEKNKISISDSIKVLTGRLDGFKPKVFNINTKSDVQEAIPYRVMYDKSTFVEESELTSADESENLNILCKLFGSFSLEALKDLYERCNKDIIWATSLLLDSETKLCEDTEFENFQKSCDGSQIGPFSLGLNLKEIISQRGTLENSNSPVPEFSHGIGISNADSQSTCDAERGNSEQAEMRAVTPENHESMTSIFPSAAVGLKNNNDILPNSQEELLYSSKQSFPGILKATTPKDMSETEKNLVVTETGDNIHSPSHFSDIFNFVSSTSNLELNEEIYFTDSLEIKRNENFPKDYVKFSDEEEFMNEDEKEMKEILMAGSSLSAGVSGEDKTEILNPTPAMAKSLTIDCLELALPPELAFQLNELFGPVGIDSGSLTVEDCVVHIDLNLAKVIHEKWKESVMERQRQEEVSCGKFMQDPSLVGHTGLDNPEQKSSQRTGKKLLKTLTASEMLPLLDHWNTQTKKVSLREIMSEEIALQEKHNLKRETLMFEKDCATKLKEKQLFKIFPAINQNFLVDIFKDHNYSLEHTVQFLNCVLEGDPVKTVVAQEFVHQNENVTSHTGQKSKEKKPKKLKETEETPSELSFQDFEYPDYDDYRAEAFLHQQKRMECYSKAKEAYRIGKKNVATFYAQQGTLHEQKMKEANHLAAIEIFEKVNASLLPQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVMLK", "sequence_length": 1770, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "48ed309988caecbf0d91f49d2a693e04bf5f69be64bfba9bf9cd0ad2182bcdd1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q86UW6.json", "taxon_id": "9606", "uniprot_accession": "Q86UW6", "uniprot_release": "2026_03" } ], "pfam_id": "PF25126", "short_name": "DUF7818", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7819-pf25127.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25127", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7819-pf25127.yaml" } ], "pfam_ids": [ "PF01585", "PF01805", "PF04818", "PF25127" ], "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEMPMPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEFYSYYKCKLALEQQQLICKQQAPELEPTSAMPPLPQPPLAPTASLTPAQGTPSMDELIQQSQWSLQQQEQHLLALRQEQVTTAVAHAVEQQMQKLLEETQLDMSEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQATLINEYSSVVQPVQLAFQQQIQSLKTQHEEFVSSLAQQQQQQQQQQQQQPQPQPQPQIQLPQMEADVKATPPPPAPPPASAPAPTIPPTTQPDDNKPPIQMPGSSEYDTSAGVQDPAAAGPRGPGPHEQIPPNKPPWFDQPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRGDPGWNGQRDAPWNNQPDPNWNNQFEGPWNNQHEPPPWGGAQREPPFRMQRPPHFRGPFPPHQQHPQFNQPPHPHNFNRFPPRFMQDDFPPRHPFERPPYPHRFDYPQGDFPADMGPPHHHPGHRMPHPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQGPPHINHDDPSLVPNVPYFDLPAGLMAPLVKLEDHEYKPLDPKDIRLPPPMPPSERLLAAVEAFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSSSRSSKSSRSSSRSHSRSRSRSSSRSRSRSRSRSRSSRSRSRSRSRSRSKSYSPGRRRRSRSRSPTPPSAAGLGSNSAPPIPDSRLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRRNKSYSFIARMKARDEFSTFGTRKEEKED", "sequence_length": 936, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3f80e135d141aa4e30a7628149b69ee89c2dbd390c86c15b240350fafbddb30a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CGZ0.json", "taxon_id": "10090", "uniprot_accession": "Q8CGZ0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7819-pf25127.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25127", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7819-pf25127.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:Q8IWX8", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF01585", "PF01805", "PF04818", "PF25127" ], "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "4c1380915f450dc5a04773855bdf7d1c5f58ca6175fe87d3246c98f54f990f4d", "sequence_version": 3, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MEMPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEFYSYYKCKLALEQQQLICKQQTPELEPAATMPPLPQPPLAPAAPIPPAQGAPSMDELIQQSQWNLQQQEQHLLALRQEQVTAAVAHAVEQQMQKLLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQATLINEYSSVVQPVQLAFQQQIQTLKTQHEEFVTSLAQQQQQQQQQQQQLQMPQMEAEVKATPPPPAPPPAPAPAPAIPPTTQPDDSKPPIQMPGSSEYEAPGGVQDPAAAGPRGPGPHDQIPPNKPPWFDQPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRGDPGWNGQRDAPWNNQPDAAWNSQFEGPWNSQHEQPPWGGGQREPPFRMQRPPHFRGPFPPHQQHPQFNQPPHPHNFNRFPPRFMQDDFPPRHPFERPPYPHRFDYPQGDFPAEMGPPHHHPGHRMPHPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQGPPHINHDDPSLVPNVPYFDLPAGLMAPLVKLEDHEYKPLDPKDIRLPPPMPPSERLLAAVEAFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSRSQSRSRSKSYSPGRRRRSRSRSPTPPSSAGLGSNSAPPIPDSRLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRRNKSYSFIARMKARDECK", "sequence_length": 916, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "4c1380915f450dc5a04773855bdf7d1c5f58ca6175fe87d3246c98f54f990f4d", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IWX8.json", "taxon_id": "9606", "uniprot_accession": "Q8IWX8", "uniprot_release": "2026_03" } ], "pfam_id": "PF25127", "short_name": "DUF7819", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25130", "short_name": "DUF7820", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pasteurella multocida (strain Pm70)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6630-pf20335.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20335", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6630-pf20335.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7821-pf25134.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25134", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7821-pf25134.yaml" } ], "pfam_ids": [ "PF20335", "PF25134" ], "protein_name": "Uncharacterized protein PM1082", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTLIEKLRKIEDYVLQHCQYRFYFAKSPFGMALRAQYYYYPEDIPEATKNLANHFLTQAGYEDFYTPLEALMSKANITPPSPAEMIEGGNWRFFAIKFNFFSPLNPALKKYYNTEYVTFICIPCQDHEGQDSMELLYTSPTTGNLFKEMGNSQLLDPNCEADQAYLQLLEEAVDFMCEKLDIDAPEPIDITEALHDFTTLLNIHDKEEFIKRYQQIQETPEKCLLDLVEQGYADAEEGDKPELAFLRYRFLLQPMLDSFDTDWCIDNEELSEYLSNVIGKKFKLPQKALEPYEIVERLEKKSDYTLLNIETEQDSYSLFVCKQKDKKRILQLARMLDFAIVPF", "sequence_length": 343, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b0d16518dd3ad87f92bcc2da36ea3a5d338a7e68d0e767b757f8d05319682b51", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CLW7.json", "taxon_id": "272843", "uniprot_accession": "Q9CLW7", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pasteurella multocida (strain Pm70)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7821-pf25134.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25134", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7821-pf25134.yaml" } ], "pfam_ids": [ "PF25134" ], "protein_name": "Uncharacterized protein PM0657", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYDYILNALVKIEAYLDNESDSVEIPNNLFKTDILVDYYYYPGHFVDVDDDEKELIAATLTDAGYADHYDALAELLWKANIEPIPKEELVDGNSYCFIMISFGITPVQAHLKAKKAKYEQVTFFCLPYTDREGEQRFKILVVPNTFGSIFKEMKCACLLDIESEEQLDKTYWSLLERAIGQICQTLSIDVTGFALSDTTYQQKTLETYSPYLTQFCQLTQIQNIEGFKARWLEIQQQQKQLIQQVKDEGFYGTVKPAFLNYRFLLCEFLTSTYEDHWQMDYDALFDYLAKYLEQPFELDEEDGLQPNDIARKVEAESNYSLLDIETRLESYCFLPCLKTDVESILNLAEILDFPMSKLGD", "sequence_length": 360, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6e0de5fd86946a91d1b8b4ce7f479bc9e9c995ca495fe62d0c7e0bbd0a8cd658", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CMZ3.json", "taxon_id": "272843", "uniprot_accession": "Q9CMZ3", "uniprot_release": "2026_03" } ], "pfam_id": "PF25134", "short_name": "DUF7821", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25135", "short_name": "DUF7822", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25136", "short_name": "DUF7823", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25148", "short_name": "DUF7824", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25149", "short_name": "DUF7825", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25159", "short_name": "DUF7826", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haloferax gibbonsii", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7827-pf25162.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25162", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7827-pf25162.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/geved-pf20009.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20009", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/geved-pf20009.yaml" } ], "pfam_ids": [ "PF18204", "PF20009", "PF25162" ], "protein_name": "Cell surface glycoprotein", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTANKQVRAVLLAALMVFSVFAGSIAFTGTAAAAATSATVSPDTVDKGPSASVDVTVNSGGANDVHVWLDLNDDGYYNASEPNSTDTAAATATLSLSIPESVSAGEYNVSAAESASLTAGTTQQEAYDTLDVVAANPADFNSATHFDDGTPKVEVAFDEAVTVNEMNVTDGETNLSQSVSVSSGQVNVTLSQVYTDDLEVTYNVTDTSGNTATATEDVTFAPIYVANESNNTAYQGSNVAVVASAVDTDVEVEGADDDNNYQFSGSTGPNSQVFVFDTDGKTLDTYQFTVGGAQKAQVDVRDLGLELTVDDLNITTKDGIEGSVSANAGDRTVDIVALDDDGDEVEDTETTVTLNGQGEADFNLSSVDAGEYTIEATDAFTGVTLESDTVTVSKAKDSTGDFASSVINEQVGDVAEITVTLDGTDTGTVTIGDYSLGYSANVTVEDDNDDGEVVLLFNSYAPKKTSSFDVDDSDDEYTVEDITTDIPSGETLDAGDYDLEVATGGEADNVATLVLEDRSTDSVATWTAPTGADLTETEDVYDAIENENLTQTDSLANGDVVVTQVSATGLEGAFDASNFDALSGTQFNLTVEQTNPGPNRDAKVLGINSSSATIIADGDNDTYFIVYDLDDVSASRTDYYDNTSTLYEVEDDDAFNATFTVLEDGDLAEDDESASDEFEVVTPELELDQDEFAVGNAAEQSISGTATVAPGTELTIRVTSDGDTQPRFLKTASVYVQADGTFSSAFDFSEQNLNDTFEVTASVDSGTADDATADGIVGEAMETTTAAETTTTEESTETTTTEESTEEPTETATATEEPTEEATEETTESSTPGFGVVVALVALVAAALLAVRRDN", "sequence_length": 855, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "de346f1553b858c95adda48855f8622c029eb71bc8c74c093c4217a0e95327c0", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A0A0K1IRS6.json", "taxon_id": "35746", "uniprot_accession": "A0A0K1IRS6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haloarcula hispanica (strain ATCC 33960 / DSM 4426 / JCM 8911 / NBRC 102182 / NCIMB 2187 / VKM B-1755)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7282-pf23951.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7282-pf23951.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7827-pf25162.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25162", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7827-pf25162.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/motif/pfam/pgf-cterm-pf18204.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF18204", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/motif/pfam/pgf-cterm-pf18204.yaml" } ], "pfam_ids": [ "PF18204", "PF23951", "PF25162" ], "protein_name": "Cell surface glycoprotein 1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTDTNEKIRSLFLTALMVFSVFAGTIAFSGGAAAAANVSVQQAAEYDSGTVELALNGSTGSTVNTGDIDIYVDGNKNPSNYGVSSVDTTDDGTTGRLQFSLDQDVQPNRNLTVKVSGLTGGDNTVVAEDIDVTSQTIDADDDSGDTNAFRGEVLAIRADGDTDNDDATSSTKIVVEDSNGAVVTQDTYTANSKVYTYETENLDTGEEYEVSVAGDADENITISNLDLNVNIDDDVGDGANIDDKDTLAVNVSTTRGGEPANATLFNEDDDKVATQVESLKGNENVVFDFGNQSADDSPYYVKVTDNQTGVSAESDQINVSESDDGEASFESSTVQDNIGDVVNITVQVDNTEDAVINIGDENDDNYYIQGQLEDDNGDGEVTVQFNSYTAGNYSDSTVLSVPGDDDIDNIKEGGDYTRGSLSGDTLEAGSYSMNVTAGTSPDVTSPDTVGTLRLNENSVENIQTWAAPSDADIDDDDVDIYDRIGENLTQSDDVAAEDVVVHEIQASGIEGALEYEQEDGSASDVTEAFIAATDTTPYRINDSDATTSGLRLYVNRTDVGANADANPIDFSNSSDAVTVVDDPDNNTYFVAVDTSDVVFENGKTIVKEEDTRLNATFSVREGPLTDDRNSDSAIYTTSERDATLDLDDSGVVTVSAAAGQEVTGETNVAPGSELEVEMESESDANPFVIRPEVDVATDGTYTATADFQDYSAGTNFTVQTLDVDGDSDFSDEEDGRIVEADTATVSISEQESDGSEVVVDSAQLSEGGFIAIHAGNASGDVVGNSEYLGAGSHEDITVTLDEPMDEDFTAVAMPHQDTNGNEAYDFPGDDDPYTQNGSAVTDSANVTIVEEEQTEAPDTETETEAPDTETEEETDAPATDEPATDESETTAAEGPGFTAAIALIALVAAALLAVRRDN", "sequence_length": 918, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b490fbe092f18d5ca9f2f307032efcb6a8b7c001cddfd97e5477bc179956dccd", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G0HV85.json", "taxon_id": "634497", "uniprot_accession": "G0HV85", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Haloarcula hispanica (strain ATCC 33960 / DSM 4426 / JCM 8911 / NBRC 102182 / NCIMB 2187 / VKM B-1755)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7282-pf23951.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF23951", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7282-pf23951.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7827-pf25162.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25162", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7827-pf25162.yaml" } ], "pfam_ids": [ "PF18204", "PF23951", "PF25162" ], "protein_name": "Cell surface glycoprotein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGNSDKVRSLFLTALMVFSVFAGTIAFSGGAAAAANVSVQQAAEYDSGTVELALNGSTGSPVTTGDINIYIDGNENPSNYGVSSVDTTDDGTTGRLQFSLDQDVQPNRNLTVEVSGLTGGDNTVVAEDIDVTSQTIDADDDSGDTNAFRGEVLAIRADGGEGDADDATSSTQIVVEDSNGAVVTQDTYTANSKVYTYETENLDTGEEYEVTVGGTADENITISNLDLNVNIDDDVGDGANIDDTDTLAVNVSTTRGGEPANATLFNEDDDKVATQIKSLKGNENVVFDFGNQSADDSPYYVKVTDNQTGVSAESDQINVSESGEGDASFETSTVQDEVGDVTNITVQMGNTENAVINVGSQNDDNYVIQGQLEDDNGDGEVTVQFNSYTAGTDNNNTVLTVPGDDDLDEVEEKGSFTDSRNSLDEDVLEPQSYSINVTAGTSPDVTSPDTVGTLRLNENSVESMQTWVAPSDADIDDEDIDIYDRIGENLTQSDDVAVEDVVVHEIQASGIEGALEYEQEDNGSSDVTDAFIAAADTTPDRINDDTSASGLQLYVNRTDVGANADADPINFANSSSAVTVVDDPDNNTYFVALDTEDVEFESGNTITEEEDTEINATFSVQEGPLTDDSSSESELYTTSERNAELNLDDDGFVTVGAAAGQTVSGDTNVAPGSELEVEMESESEANPFVERPEATVGPNGTYVATEDFSDYSAGTNFTVQTLDVDGDSDFSDEEDGRIVEADTATVSISDQESDGSEVVVDSAQLSSGGFIAIHAGDASGDVVGNSEYLEAGTYNDLTITLDEPMDENFTAVAMPHQDTNGNEEYDFPGDDGPYTQNGSAVTDSANVTVSAEEPEDTPEDTPEDTPEDTPEDTPEDTPADTPEDTPDTGTETTEAEGPGFTAAIALIALVAAALLAVRRDN", "sequence_length": 922, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "76fb66de5c81e833c13326d3e46c5013a88dc823cee711ba96b1763f2e922a8b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/G0HV86.json", "taxon_id": "634497", "uniprot_accession": "G0HV86", "uniprot_release": "2026_03" } ], "pfam_id": "PF25162", "short_name": "DUF7827", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25165", "short_name": "DUF7828", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25167", "short_name": "DUF7829", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25169", "short_name": "DUF7830", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25176", "short_name": "DUF7831", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25191", "short_name": "DUF7832", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25200", "short_name": "DUF7833", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25202", "short_name": "DUF7834", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25205", "short_name": "DUF7835", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25206", "short_name": "DUF7836", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25207", "short_name": "DUF7837", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25208", "short_name": "DUF7838", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": 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"MLAQLPPALQSLHLPLRLKLWDGNQFDLGPSPQVTILVKEPQLIGQLTHPSMEQLGTAFVEGKLELEGDIGEAIRVCDELSEALFTDEDEQPPERRSHDKRTDAEAISYHYDVSNAFYQLWLDQDMAYSCAYFREPDNTLDQAQQDKFDHLCRKLRLNAGDYLLDVGCGWGGLARFAAREYDAKVFGITLSKEQLKLGRQRVKAEGLTDKVDLQILDYRDLPQDGRFDKVVSVGMFEHVGHANLALYCQKLFGAVREGGLVMNHGITAKHVDGRPVGRGAGEFIDRYVFPHGELPHLSMISASICEAGLEVVDVESLRLHYAKTLHHWSENLENQLHKAAALVPEKTLRIWRLYLAGCAYAFEKGWINLHQILAVKPYADGHHDLPWTREDMYR", "sequence_length": 394, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3fa2e925df7b79bf93f785e0c1fac9aa98db1c8a3606f93f16d4507713acbd40", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P31049.json", "taxon_id": "303", "uniprot_accession": "P31049", "uniprot_release": "2026_03" } ], "pfam_id": "PF25371", "short_name": "DUF7884", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 26, "discovery_scanned": true, "example_count": 22, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-16-fbxl16-and-similar-p-cd22127.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22127", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-16-fbxl16-and-similar-p-cd22127.yaml" } ], "pfam_ids": [ "PF25372" ], "protein_name": "F-box/LRR-repeat protein 16", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSPGIDGDPKPPCLPRNGLVKLPGQPNGLGAASITKGTPAAKNRPCQPPPPPTLPPPSLATPLSRVALAGGPCPPASGPASGPVSGPPVERPPLATDEKILNGLFWYFSACEKCILAQVCKAWRRVLYQPKFWAGLTPVLHAKELYNVLPGGEKEFVNLQGFAARGFEGFCLVGVSDLDICEFIDNYSLSKKGVKAMSLKRSTITDAGLEVMLEQMQGVVRLELSGCNDFTEAGLWSSLSARITSLSVSDCINVADDAIAAISQLLPNLAELSLQAYHVTDTALAYFTARQGHSTHTLRLLSCWEITNHGVVNVVHSLPNLTSLSLSGCSKVTDDGVELVAENLRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCVRITDTGLSYLSTMSSLRSLYLRWCCQVQDFGLKHLLAMRNLRLLSLAGCPLLTTTGLSGLVQLQELEELELTNCPGATPELFKYFSQHLPRCLVIE", "sequence_length": 479, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bbd8e50c27e01352270970738a7238585b3d5d74dd5bbc55232fb75130e0ae4b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/A2RT62.json", "taxon_id": "10090", "uniprot_accession": "A2RT62", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-lrr-repeat-protein-15-like-leucin-rich-repeat-domain-ipr057207.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057207", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-lrr-repeat-protein-15-like-leucin-rich-repeat-domain-ipr057207.yaml" } ], "pfam_ids": [ "PF25372" ], "protein_name": "Protein AMN1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPLSGVVSQLLELCLQYLVINISRYISDIKYLPSNIKDRLIKIMSIRGRITDSNISEVLHPEVQRLDLRSCDISDVALQHLCKCRKLKALNLKSCREHRNSITSEGIKAVASSCSDLHEIYLKGCCSVTDEGVLALALNCHLLKIIDLGGCLGITDVSLHALGKNCPFLQCVDISTTQVSDNGVVALVSGPCAKQLEEINMRYCINLTDKAVEAALTACPRICILLFHGCPLITDRSQEVLEQLIGSRKLKQVTWSVY", "sequence_length": 258, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "10561a1e579b5e6a2c50c7cf8644f4cd4092e95f3e23a04b1bfbf50869fb63d6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B8JKV0.json", "taxon_id": "10090", "uniprot_accession": "B8JKV0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharomyces cerevisiae (strain ATCC 204508 / S288c)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/cellular-bud-neck-contractile-ring-go0000142.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000142", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/cellular-bud-neck-contractile-ring-go0000142.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/scf-ubiquitin-ligase-complex-go0019005.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0019005", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/scf-ubiquitin-ligase-complex-go0019005.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/cellular-response-to-methylmercury-go0071406.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0071406", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/cellular-response-to-methylmercury-go0071406.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/mitotic-cell-cycle-g1-arrest-in-response-to-pheromone-go0000751.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0000751", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitotic-cell-cycle-g1-arrest-in-response-to-pheromone-go0000751.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/scf-dependent-proteasomal-ubiquitin-dependent-protein-catabolic-process-go0031146.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031146", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/scf-dependent-proteasomal-ubiquitin-dependent-protein-catabolic-process-go0031146.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-lrr-repeat-protein-15-like-leucin-rich-repeat-domain-ipr057207.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057207", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-lrr-repeat-protein-15-like-leucin-rich-repeat-domain-ipr057207.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/interpro/leucine-rich-repeat-cysteine-containing-subtype-ipr006553.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR006553", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/interpro/leucine-rich-repeat-cysteine-containing-subtype-ipr006553.yaml" } ], "pfam_ids": [ "PF12937", "PF25372" ], "protein_name": "SCF E3 ubiquitin ligase complex F-box protein GRR1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDQDNNNHNDSNRLHPPDIHPNLGPQLWLNSSGDFDDNNNNNNNNNNNNSTRPQMPSRTRETATSERNASEVRDATLNNIFRFDSIQRETLLPTNNGQPLNQNFSLTFQPQQQTNALNGIDINTVNTNLMNGVNVQIDQLNRLLPNLPEEERKQIHEFKLIVGKKIQEFLVVIEKRRKKILNEIELDNLKLKELRIDNSPQAISYLHKLQRMRLRALETENMEIRNLRLKILTIIEEYKKSLYAYCHSKLRGQQVENPTDNFIIWINSIDTTESSDLKEGLQDLSRYSRQFINNVLSNPSNQNICTSVTRRSPVFALNMLPSEILHLILDKLNQKYDIVKFLTVSKLWAEIIVKILYYRPHINKKSQLDLFLRTMKLTSEETVFNYRLMIKRLNFSFVGDYMHDTELNYFVGCKNLERLTLVFCKHITSVPISAVLRGCKFLQSVDITGIRDVSDDVFDTLATYCPRVQGFYVPQARNVTFDSLRNFIVHSPMLKRIKITANNNMNDELVELLANKCPLLVEVDITLSPNVTDSSLLKLLTRLVQLREFRITHNTNITDNLFQELSKVVDDMPSLRLIDLSGCENITDKTIESIVNLAPKLRNVFLGKCSRITDASLFQLSKLGKNLQTVHFGHCFNITDNGVRALFHSCTRIQYVDFACCTNLTNRTLYELADLPKLKRIGLVKCTQMTDEGLLNMVSLRGRNDTLERVHLSYCSNLTIYPIYELLMSCPRLSHLSLTAVPSFLRPDITMYCRPAPSDFSENQRQIFCVFSGKGVHKLRHYLVNLTSPAFGPHVDVNDVLTKYIRSKNLIFNGETLEDALRRIITDLNQDSAAIIAATGLNQINGLNNDFLFQNINFERIDEVFSWYLNTFDGIRMSSEEVNSLLLQVNKTFCEDPFSDVDDDQDYVVAPGVNREINSEMCHIVRKFHELNDHIDDFEVNVASLVRVQFQFTGFLLHEMTQTYMQMIELNRQICLVQKTVQESGNIDYQKGLLIWRLLFIDKFIMVVQKYKLSTVVLRLYLKDNITLLTRQRELLIAHQRSAWNNNNDNDANRNANNIVNIVSDAGANDTSNNETNNGNDDNETENPNFWRQFGNRMQISPDQMRNLQMGLRNQNMVRNNNNNTIDESMPDTAIDSQMDEASGTPDEDML", "sequence_length": 1151, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "597d359cbfe4aafb96b080f39d18447e4b38d050bfc9f5d2a1f3533aa267b2e9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P24814.json", "taxon_id": "559292", "uniprot_accession": "P24814", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Caenorhabditis elegans", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/scf-ubiquitin-ligase-complex-go0019005.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0019005", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/scf-ubiquitin-ligase-complex-go0019005.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/defecation-rhythm-go0035882.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0035882", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/defecation-rhythm-go0035882.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-dauer-entry-go1905909.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905909", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-dauer-entry-go1905909.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-defecation-rhythm-go2000746.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:2000746", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-defecation-rhythm-go2000746.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/scf-dependent-proteasomal-ubiquitin-dependent-protein-catabolic-process-go0031146.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031146", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/scf-dependent-proteasomal-ubiquitin-dependent-protein-catabolic-process-go0031146.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-2-fbxl2-f-box-lrr-repea-cd22115.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22115", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-2-fbxl2-f-box-lrr-repea-cd22115.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-lrr-repeat-protein-15-like-leucin-rich-repeat-domain-ipr057207.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057207", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-lrr-repeat-protein-15-like-leucin-rich-repeat-domain-ipr057207.yaml" } ], "pfam_ids": [ "PF00646", "PF13516", "PF25372" ], "protein_name": "F-box/LRR-repeat protein fbxl-1", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METAERISAAASAASSRRAKRLAQQAHKTHPVIQAKQNQMYLITTLSPAQVDNSLINRVLPKEVLLKVFSFLDTKALCRSAQVCRSWSILALDGSNWQRVDLFTFQRDVKTAVVENLARRCGGFLKELSLKGCENVHDSALRTFTSRCPNLEHLSLYRCKRVTDASCENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYLNISWCDAIQDRGVQIILSNCKSLDTLILRGCEGLTENVFGSVEAHMGAIKKLNLLQCFQLTDITVQNIANGATALEYLCMSNCNQISDRSLVSLGQHSHNLKVLELSGCTLLGDNGFIPLARGCRQLERLDMEDCSLISDHTINSLANNCTALRELSLSHCELITDESIQNLASKHRETLNVLELDNCPQLTDSTLSHLRHCKALKRIDLYDCQNVSKEAIVRFQHHRPNIEIHAYFAPVTPPTDQVVNRGGICRCCVIL", "sequence_length": 466, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "126f00580b70ba40e797aadce283a4ee43e30617f339ec3c08f96b4ed9119cc4", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/P34284.json", "taxon_id": "6239", "uniprot_accession": "P34284", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-7-fbxl7-and-similar-pro-cd22120.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22120", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-7-fbxl7-and-similar-pro-cd22120.yaml" } ], "pfam_ids": [ "PF12937", "PF25372" ], "protein_name": "F-box/LRR-repeat protein 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGANNGKQYGSEGKGSSSVSSDVSSSTDHTPTKAQRNVATSEDSDLSMRTLSTPSPALICPPTLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQDTPNVCLMLETVIVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCTSIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRITDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLESLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQMLNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF", "sequence_length": 491, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f44d805be7377af36fb4a07dfbf734010c82f2e0e332bd64bb1b920f6b197bb6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5BJ29.json", "taxon_id": "10090", "uniprot_accession": "Q5BJ29", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/scf-ubiquitin-ligase-complex-go0019005.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0019005", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/scf-ubiquitin-ligase-complex-go0019005.yaml" } ], "pfam_ids": [ "PF00646", "PF13516", "PF25372" ], "protein_name": "EIN3-binding F-box protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSGIFRFSGDEDCLLGGSMYLSPGSCPGVYYPARKRLRVAATSFYSGFEEKQTSIDVLPEECLFEILRRLPSGQERSACACVSKHWLNLLSSISRSEVNESSVQDVEEGEGFLSRSLEGKKATDLRLAAIAVGTSSRGGLGKLQIRGSGFESKVTDVGLGAVAHGCPSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVAIAENCVNLSDLTIDSCSGVGNEGLRAIARRCVNLRSISIRSCPRIGDQGVAFLLAQAGSYLTKVKLQMLNVSGLSLAVIGHYGAAVTDLVLHGLQGVNEKGFWVMGNAKGLKKLKSLSVMSCRGMTDVGLEAVGNGCPDLKHVSLNKCLLVSGKGLVALAKSALSLESLKLEECHRINQFGLMGFLMNCGSKLKAFSLANCLGISDFNSESSLPSPSCSSLRSLSIRCCPGFGDASLAFLGKFCHQLQDVELCGLNGVTDAGVRELLQSNNVGLVKVNLSECINVSDNTVSAISVCHGRTLESLNLDGCKNITNASLVAVAKNCYSVNDLDISNTLVSDHGIKALASSPNHLNLQVLSIGGCSSITDKSKACIQKLGRTLLGLNIQRCGRISSSTVDTLLENLWRCDILY", "sequence_length": 623, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "da80b220ac90d5910f4f35ab96c99e1567a4e35c8927b6f1cc74639a5bc838b4", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q708Y0.json", "taxon_id": "3702", "uniprot_accession": "Q708Y0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/localization/go/scf-ubiquitin-ligase-complex-go0019005.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0019005", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/localization/go/scf-ubiquitin-ligase-complex-go0019005.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/scf-dependent-proteasomal-ubiquitin-dependent-protein-catabolic-process-go0031146.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0031146", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/scf-dependent-proteasomal-ubiquitin-dependent-protein-catabolic-process-go0031146.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-2-fbxl2-f-box-lrr-repea-cd22115.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22115", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-2-fbxl2-f-box-lrr-repea-cd22115.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-lrr-repeat-protein-15-like-leucin-rich-repeat-domain-ipr057207.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057207", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-lrr-repeat-protein-15-like-leucin-rich-repeat-domain-ipr057207.yaml" } ], "pfam_ids": [ "PF12937", "PF25372" ], "protein_name": "F-box/LRR-repeat protein 2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVFSNSDDGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRVDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSVTNSSLKGISEGCRNLEYLNLSWCDQITKEGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCSHLTDAGFTLLARNCHELEKMDLEECVLITDSTLVQLSIHCPKLQALSLSHCELITDEGILHLSSSTCGHERLRVLELDNCLLVTDASLEHLENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVTPPPAVAGSGHRLCRCCVIL", "sequence_length": 423, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b729ce80960d80fc918b676a0f2622af53a2f2ad4aba93920d3e8742bd83cf7a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BH16.json", "taxon_id": "10090", "uniprot_accession": "Q8BH16", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-14-fbxl14-and-similar-p-cd22125.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22125", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-14-fbxl14-and-similar-p-cd22125.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-lrr-repeat-protein-14-f-box-domain-ipr047932.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR047932", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-lrr-repeat-protein-14-f-box-domain-ipr047932.yaml" } ], "pfam_ids": [ "PF12937", "PF25372" ], "protein_name": "F-box/LRR-repeat protein 14", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METHISCLFPELLAMIFGYLDVRDKGRAAQVCTAWRDAAYHKSVWRGVEAKLHLRRANPSLFPSLQARGIRRVQILSLRRSLSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR", "sequence_length": 400, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f79609f54029a62cb70f687eee7d608234c817dfb098968fed299423f261e777", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8BID8.json", "taxon_id": "10090", "uniprot_accession": "Q8BID8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/dimerization-docking-d-d-domain-found-in-f-box-lrr-repeat-protein-13-f-cd22977.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22977", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/dimerization-docking-d-d-domain-found-in-f-box-lrr-repeat-protein-13-f-cd22977.yaml" } ], "pfam_ids": [ "PF12937", "PF25372" ], "protein_name": "F-box and leucine-rich repeat protein 13", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASLRSATPRLRSYFRDKYIPQICEALLCGLLVTCPEDPLKYLEHMILAIIKRGLENLLWDTCIHPSLKSRVRRLSETYLDELFGLDDQLVTPELMIKACTFYTGHLVKTHFSGWKKVAIPRANQEEIMAEKMDKAIAHDNFRCQKYIFNRWFAYTVMSRERLITTLLRLRHLFYMQRQRIILAKWKERARHKSKTREDDLISKHELQLKKWKFKLGKPISLEGSLSDIAVENRRIAFDISVLPEQAILQIFLYLTFKDMMACSRVNRSWMAMIQRGSLWNSIDFSTVKNIADKCVVTTLQKWRLNVLRLNFRGCDFRTKTLKAVSHCKNLQELNVSDCQSFTDESMRHISEGCPGVLYLNLSNTTITNRTMRLLPRYFHNLQNLSLAYCRKFTDKGLQYLNLGNGCHKLIYLDLSGCTQVLVEKCPRISSVVLIGSPHISDSAFKALSSCDLKKIRFEGNKRISDACFKSIDRNYPGINHIYMVDCKGLTDSSLKSLSLLKQLTVLNLTNCIRIGDIGLKHFFDGPASIRLRELNLTNCSLLGDSSVIRLSERCPNLHYLNLRNCEHLTDLAIEYIASMLSLISVDLSGTLISNEGMTILSRHRKLREVSVSDCVNITDFGIRAYCKTSLLLEHLDVSYCSQLTDDIIKTIAIFCTRITSLNIAGCPKITDAGMEILSARCHYLHILDISGCIQLTDQIIQDLQIGCKQLRILKMQFCKSISPAAAQKMSSVVQHQEYNSDNPPHWFGYDSEGNPLDKIHSRVQLRTYSKLIVKEPFSIDEEDPDSKHQ", "sequence_length": 790, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "033c1410a551103022deebe14551874097d837f5e0e6b417ddef6184a29d46c1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8CDU4.json", "taxon_id": "10090", "uniprot_accession": "Q8CDU4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/antagonist-of-mitotic-exit-network-protein-1-amn1-has-been-functionall-cd09293.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd09293", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/antagonist-of-mitotic-exit-network-protein-1-amn1-has-been-functionall-cd09293.yaml" } ], "pfam_ids": [ "PF25372" ], "protein_name": "Protein AMN1 homolog", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPRPRRVSQLLDLCLWCFMKNISRYLTDIKPLPPNIKDRLIKIMSMQGQITDSNISEILHPEVQTLDLRSCDISDAALLHLSNCRKLKKLNLNASKGNRVSVTSEGIKAVASSCSYLHEASLKRCCNLTDEGVVALALNCQLLKIIDLGGCLSITDVSLHALGKNCPFLQCVDFSATQVSDSGVIALVSGPCAKKLEEIHMGHCVNLTDGAVEAVLTYCPQIRILLFHGCPLITDHSREVLEQLVGPNKLKQVTWTVY", "sequence_length": 258, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bf0474b43604ee17044b577d9a3d427f66b7b001acef3b2cbaef84ab073dd236", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q8IY45.json", "taxon_id": "9606", "uniprot_accession": "Q8IY45", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-lrr-repeat-protein-15-like-leucin-rich-repeat-domain-ipr057207.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057207", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-lrr-repeat-protein-15-like-leucin-rich-repeat-domain-ipr057207.yaml" } ], "pfam_ids": [ "PF25372" ], "protein_name": "F-box protein At3g58530", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEAKKVTEEEEETWRREIVTSVMRLVSTRLPQTDLISLLLVSPWLYRTLISYPSIWLTINLREMTNAGDRLLAALSLPRYRQVKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNLNVCQKISDNGIEAITSICPKLKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQLVAESYPDLESLNITRCVKITDDGLLQVLQKCFSLQTLNLYALSGFTDKAYMKISLLADLRFLDICGAQNISDEGIGHIAKCNKLESLNLTWCVRITDAGVNTIANSCTSLEFLSLFGIVGVTDRCLETLSQTCSTTLTTLDVNGCTGIKRRSREELLQMFPRLTCFKVHS", "sequence_length": 353, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "11d6e5659b988430642708d8327cfbe8b4712f238c0e5bfaa324d78a22df7ef8", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8LB33.json", "taxon_id": "3702", "uniprot_accession": "Q8LB33", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-14-fbxl14-and-similar-p-cd22125.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22125", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-14-fbxl14-and-similar-p-cd22125.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/f-box-lrr-repeat-protein-14-f-box-domain-ipr047932.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR047932", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/f-box-lrr-repeat-protein-14-f-box-domain-ipr047932.yaml" } ], "pfam_ids": [ "PF12937", "PF25372" ], "protein_name": "F-box/LRR-repeat protein 14", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METHISCLFPELLAMIFGYLDVRDKGRAAQVCTAWRDAAYHKSVWRGVEAKLHLRRANPSLFPSLQARGIRRVQILSLRRSLSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKEARGDFSPLFTVRTRGSSRR", "sequence_length": 418, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "13950f2cf7969683eec295375f20491b7070c59a661330ae119f4302677ba541", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N1E6.json", "taxon_id": "9606", "uniprot_accession": "Q8N1E6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-16-fbxl16-and-similar-p-cd22127.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22127", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-16-fbxl16-and-similar-p-cd22127.yaml" } ], "pfam_ids": [ "PF25372" ], "protein_name": "F-box/LRR-repeat protein 16", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSPGIDGDPKPPCLPRNGLVKLPGQPNGLGAASITKGTPATKNRPCQPPPPPTLPPPSLAAPLSRAALAGGPCTPAGGPASALAPGHPAERPPLATDEKILNGLFWYFSACEKCVLAQVCKAWRRVLYQPKFWAGLTPVLHAKELYNVLPGGEKEFVNLQGFAARGFEGFCLVGVSDLDICEFIDNYALSKKGVKAMSLKRSTITDAGLEVMLEQMQGVVRLELSGCNDFTEAGLWSSLSARITSLSVSDCINVADDAIAAISQLLPNLAELSLQAYHVTDTALAYFTARQGHSTHTLRLLSCWEITNHGVVNVVHSLPNLTALSLSGCSKVTDDGVELVAENLRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCVRITDTGLSYLSTMSSLRSLYLRWCCQVQDFGLKHLLALGSLRLLSLAGCPLLTTTGLSGLVQLQELEELELTNCPGATPELFKYFSQHLPRCLVIE", "sequence_length": 479, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6f4ef7a2c691b9992e495ffc203998f86dd437b5edcb48363fb5abed25615f6a", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q8N461.json", "taxon_id": "9606", "uniprot_accession": "Q8N461", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-13-fbxl13-and-similar-p-cd22124.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22124", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-13-fbxl13-and-similar-p-cd22124.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/f-box-like-pf12937.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF12937", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/f-box-like-pf12937.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/lrr-fbxl15-pf25372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/lrr-fbxl15-pf25372.yaml" } ], "pfam_ids": [ "PF12937", "PF25372" ], "protein_name": "F-box and leucine-rich repeat protein 13", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTPELMIKACSFYTGHLVKTHFCTWRDIARTNENVVLAEKMNRAVTCYNFRLQKSVFHHWHSYMEDQKEKLKNILLRIQQIIYCHKLTIILTKWRNTARHKSKKKEDELILKHELQLKKWKNRLILKRAAAEESNFPERSSSEVFLVDETLKCDISLLPERAILQIFFYLSLKDVIICGQVNHAWMLMTQLNSLWNAIDFSSVKNVIPDKYIVSTLQRWRLNVLRLNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDNCVKALVEKCSRITSLVFTGAPHISDCTFRALSACKLRKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRIGDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGIGYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLILEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGCVLLTDQILEDLQIGCKQLRILKMQYCTNISKKAAQRMSSKVQQQEYNTNDPPRWFGYDREGNPVTELDNITSSKGALELTVKKSTYSSEDQAA", "sequence_length": 735, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "16699290c7c095dacc446ea3f7b2cdfa5dcca526bb70103a97b958e6ca15be62", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q8NEE6.json", "taxon_id": "9606", "uniprot_accession": "Q8NEE6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/regulation-of-protein-catabolic-process-at-presynapse-modulating-synaptic-transm-go0099575.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:0099575", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/regulation-of-protein-catabolic-process-at-presynapse-modulating-synaptic-transm-go0099575.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-2-fbxl2-f-box-lrr-repea-cd22115.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22115", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-2-fbxl2-f-box-lrr-repea-cd22115.yaml" } ], "pfam_ids": [ "PF12937", "PF13516", "PF25372" ], "protein_name": "F-box/LRR-repeat protein 20", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL", "sequence_length": 436, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b094e2df5fc99cdea70574b5d502febbb8e55e3716912528fdf162944b905104", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q96IG2.json", "taxon_id": "9606", "uniprot_accession": "Q96IG2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-15-fbxl15-and-similar-p-cd22126.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22126", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-15-fbxl15-and-similar-p-cd22126.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/f-box-pf00646.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00646", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/f-box-pf00646.yaml" } ], "pfam_ids": [ "PF00646", "PF25372" ], "protein_name": "F-box/LRR-repeat protein 15", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEPPMEPSGGEQEPGAVRFLDLPWEDVLLPHVLNRVPLRQLLRLQRVSRAFRSLVQLHLAGLRRFDAAQVGPQIPRAALARLLRDAEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVALGGCGQLSRRALGALAEGCPRLQRLSLAHCDWVDGLALRGLADRCPALEELDLTACRQLKDEAIVYLAQRRGAGLRSLSLAVNANVGDAAVQELARNCPELHHLDLTGCLRVGSDGVRTLAEYCPVLRSLRVRHCHHVAESSLSRLRKRGVDIDVEPPLHQALVLLQDMAGFAPFVNLQV", "sequence_length": 300, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "eb82f4252bce35e628ed7e30201837cec52ff40e77fad269c0197e9face396eb", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9H469.json", "taxon_id": "9606", "uniprot_accession": "Q9H469", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mus musculus", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-only-protein-13-fbxo13-and-similar-protein-cd22092.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22092", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-only-protein-13-fbxo13-and-similar-protein-cd22092.yaml" } ], "pfam_ids": [ "PF12937", "PF13516", "PF25372" ], "protein_name": "F-box/LRR-repeat protein 17", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGHLLSKEPRNRPSQKRPRCCSWCRRRRPLLRLPRRALAKASPQPAAPRSRDCFFRGPCMLCFIVHSPGAPASAGLEEEPPLSPPPPPPRDGAYAAVSSQHLARRYAALAAEDCAAAARRFLLSSAAAAAAAASSPASCCKELGLAAAAAWEQQGRSLFLAGVGPVRFLGPLAAVQLFRAPPAPPPQAEPATALEMVCKRKGAGVPACTPCKQPRCGCGGCGGGGGGGGGPAGGGASPPRPPDAGCCQAPEQPPPPLCPAPASPASECAPIVAAAGDTVRAGGTAPSSAQQQPESGDADCQEPPENPCDCHREPPPEIPDINQLPPSILLKIFSNLSLNERCLSASLVCKYWRDLCLDFQFWKQLDLSSRQQVTDELLEKIASRSQNIIEINISDCRSLSDSGVCVLAFKCPGLLRYTAYRCKQLSDTSIIAVASHCPLLQKVHVGNQDKLTDEGLKQLGSRCRELKDIHFGQCYKISDEGMIVIAKSCLKLQRIYMQENKLVTDQSVKAFAEHCPELQYVGFMGCSVTSKGVIHLTKLRNLSSLDLRHITELDNETVMEIVKRCKNLSSLNLCLNWIINDRCVEVIAKEGQNLKELYLVSCKITDYALIAIGRYSVTIETVDVGWCKEITDQGATLIAQSSKSLRYLGLMRCDKVNELTVEQLVQQYPHITFSTVLQDCKRTLERAYQMGWTPNMSAATS", "sequence_length": 701, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "484509363692e972930c62b6937fdbc732e12861fb37b76cf7ad47926ae541ca", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9QZN1.json", "taxon_id": "10090", "uniprot_accession": "Q9QZN1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-4-fbxl4-and-similar-pro-cd22117.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22117", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-4-fbxl4-and-similar-pro-cd22117.yaml" } ], "pfam_ids": [ "PF00646", "PF25372" ], "protein_name": "F-box/LRR-repeat protein 10", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATTTVVCGGGGDVEGCDGERSLDLLPAALLETIMTKLDVASLCSLASTCKTLKSCVTRVLTFTPNFHIFNVSLSMETVRPLLFPNQQLSSLKLDCGRLGNSAIDILVRPSLREISLHNCRDFSGDLISEIGRKCKDLRLLCLGSVAEKVGRSISRCALEDLLNGCSHLEVLALMFDLSLYLRPGDGRIFGLVSDRLTHLELGHITSRMMTQLLTSTEISGQDSNRVTTSTVLQNVQRLRLSVDCITDAVVKAISKSLPSLIDLDIRDAPLEDPRQVSDLTDFGLHEINQNGKLKHLSLIRSQEFHPTYFRRVSDQGMLFLADKCLGMETICLGGFCRVTDAGFKTILHSCASLSKFSIYHGPKLTDLVFHDILATTLSLSHVSLRRCHLLTDHAIQKLASSLKLENLDLRGCRNLRDETLTAVSHLPKLKVLLLDGADISDTGLSYLKEGVLDSLVSLSVRGCRNLTDKFMSTLFDGSSKLALRELDLSNLPNLTDAAIFALAKSGAPITKLQLRECRLIGDASVMALASTRVYEDECPGSSLCLLDLYDCGGITQLSFKWLKKPFFPRLKWLGITGSVNRDIVDALARRRPHLQVSCRGEELGNDGEDDWDSADIHQHIEAQEDELEQWILGDEGDVEMEDAEDESEEDASEED", "sequence_length": 656, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "bfc895c267d1a8ece8395022bc65a058270fa524245cd538921aee673b2520a7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9SDA8.json", "taxon_id": "3702", "uniprot_accession": "Q9SDA8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-only-protein-13-fbxo13-and-similar-protein-cd22092.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22092", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-only-protein-13-fbxo13-and-similar-protein-cd22092.yaml" } ], "pfam_ids": [ "PF12937", "PF13516", "PF25372" ], "protein_name": "F-box/LRR-repeat protein 17", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGHLLSKEPRNRPSQKRPRCCSWCRRRRPLLRLPRRTPAKVPPQPAAPRSRDCFFRGPCMLCFIVHSPGAPAPAGPEEEPPLSPPPRDGAYAAASSSQHLARRYAALAAEDCAAAARRFLLSSAAAAAAAAASASSPASCCKELGLAAAAAWEQQGRSLFLASLGPVRFLGPPAAVQLFRGPTPSPAELPTPPEMVCKRKGAGVPACTPCKQPRCGGGGCGGGGGGGGGGGPAGGGASPPRPPDAGCCQAPEQPPQPLCPPPSSPTSEGAPTEAGGDAVRAGGTAPLSAQQQHECGDADCRESPENPCDCHREPPPETPDINQLPPSILLKIFSNLSLDERCLSASLVCKYWRDLCLDFQFWKQLDLSSRQQVTDELLEKIASRSQNIIEINISDCRSMSDNGVCVLAFKCPGLLRYTAYRCKQLSDTSIIAVASHCPLLQKVHVGNQDKLTDEGLKQLGSKCRELKDIHFGQCYKISDEGMIVIAKGCLKLQRIYMQENKLVTDQSVKAFAEHCPELQYVGFMGCSVTSKGVIHLTKLRNLSSLDLRHITELDNETVMEIVKRCKNLSSLNLCLNWIINDRCVEVIAKEGQNLKELYLVSCKITDYALIAIGRYSMTIETVDVGWCKEITDQGATLIAQSSKSLRYLGLMRCDKVNEVTVEQLVQQYPHITFSTVLQDCKRTLERAYQMGWTPNMSAASS", "sequence_length": 701, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f086e32b89bf4adc59b45737d3868615d0941a14001bdcd64d1a31da453f1d29", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q9UF56.json", "taxon_id": "9606", "uniprot_accession": "Q9UF56", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-7-fbxl7-and-similar-pro-cd22120.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CDD:cd22120", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/f-box-domain-found-in-f-box-lrr-repeat-protein-7-fbxl7-and-similar-pro-cd22120.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/lrr-fbxl15-pf25372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/lrr-fbxl15-pf25372.yaml" } ], "pfam_ids": [ "PF12937", "PF25372" ], "protein_name": "F-box/LRR-repeat protein 7", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGANNGKQYGSEGKGSSSISSDVSSSTDHTPTKAQKNVATSEDSDLSMRTLSTPSPALICPPNLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF", 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[], "pfam_id": "PF25438", "short_name": "DUF7896", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25448", "short_name": "DUF7897", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Homo sapiens", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/dna-pol-a-pf00476.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF00476", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/dna-pol-a-pf00476.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7898-pf25453.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25453", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7898-pf25453.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/hth-61-pf20470.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF20470", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/hth-61-pf20470.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/pattern/dna-polymerase-a.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "PROSITE:PS00447", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/pattern/dna-polymerase-a.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "ptm_registry_exact_uniprot_pfam_xref" ], "mech": "ProteinTraitsMech", "path": "data/grounding/protein_registry.jsonl", "qualification_status": "NOT_ASSESSED_FOR_THIS_FAMILY", "record_id": "UniProtKB:O75417", "section": "protein_registry", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" } ], "pfam_ids": [ "PF00270", "PF00271", "PF00476", "PF20470", "PF21099", "PF25453" ], "protein_name": "DNA polymerase theta", "registry_source": { "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "path": "data/grounding/protein_registry.jsonl", "repository": "https://github.com/CultureBotAI/proteintraitsmech", "sequence_sha256": "43f6095fcbab494973a816cf1be6a7602b856f4780fe6de9db69c5ebb4098107", "sequence_version": 2, "sha256": "1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9", "uniprot_release": "2026_03", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl" }, "registry_status": "EXACT_SEQUENCE_VERSION_MATCH", "reviewed": true, "sequence": "MNLLRRSGKRRRSESGSDSFSGSGGDSSASPQFLSGSVLSPPPGLGRCLKAAAAGECKPTVPDYERDKLLLANWGLPKAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAELYHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTFLAASMKEGKQGIQRNQESVQLGAIEACVMWLLENEFIQSTEASDGTEGKVYHPTHLGSATLSSSLSPADTLDIFADLQRAMKGFVLENDLHILYLVTPMFEDWTTIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKVVARTERQHRQMAIHKRFFTSLVLLDLISEVPLREINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNMELLLSQFQKRLTFGIQRELCDLVRVSLLNAQRARVLYASGFHTVADLARANIVEVEVILKNAVPFKSARKAVDEEEEAVEERRNMRTIWVTGRKGLTEREAAALIVEEARMILQQDLVEMGVQWNPCALLHSSTCSLTHSESEVKEHTFISQTKSSYKKLTSKNKSNTIFSDSYIKHSPNIVQDLNKSREHTSSFNCNFQNGNQEHQTCSIFRARKRASLDINKEKPGASQNEGKTSDKKVVQTFSQKTKKAPLNFNSEKMSRSFRSWKRRKHLKRSRDSSPLKDSGACRIHLQGQTLSNPSLCEDPFTLDEKKTEFRNSGPFAKNVSLSGKEKDNKTSFPLQIKQNCSWNITLTNDNFVEHIVTGSQSKNVTCQATSVVSEKGRGVAVEAEKINEVLIQNGSKNQNVYMKHHDIHPINQYLRKQSHEQTSTITKQKNIIERQMPCEAVSSYINRDSNVTINCERIKLNTEENKPSHFQALGDDISRTVIPSEVLPSAGAFSKSEGQHENFLNISRLQEKTGTYTTNKTKNNHVSDLGLVLCDFEDSFYLDTQSEKIIQQMATENAKLGAKDTNLAAGIMQKSLVQQNSMNSFQKECHIPFPAEQHPLGATKIDHLDLKTVGTMKQSSDSHGVDILTPESPIFHSPILLEENGLFLKKNEVSVTDSQLNSFLQGYQTQETVKPVILLIPQKRTPTGVEGECLPVPETSLNMSDSLLFDSFSDDYLVKEQLPDMQMKEPLPSEVTSNHFSDSLCLQEDLIKKSNVNENQDTHQQLTCSNDESIIFSEMDSVQMVEALDNVDIFPVQEKNHTVVSPRALELSDPVLDEHHQGDQDGGDQDERAEKSKLTGTRQNHSFIWSGASFDLSPGLQRILDKVSSPLENEKLKSMTINFSSLNRKNTELNEEQEVISNLETKQVQGISFSSNNEVKSKIEMLENNANHDETSSLLPRKESNIVDDNGLIPPTPIPTSASKLTFPGILETPVNPWKTNNVLQPGESYLFGSPSDIKNHDLSPGSRNGFKDNSPISDTSFSLQLSQDGLQLTPASSSSESLSIIDVASDQNLFQTFIKEWRCKKRFSISLACEKIRSLTSSKTATIGSRFKQASSPQEIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVKLSVKLKVKVKIGASWGELKDFDV", "sequence_length": 2590, "sequence_origin": "PTM_REGISTRY_MIRROR", "sequence_sha256": "43f6095fcbab494973a816cf1be6a7602b856f4780fe6de9db69c5ebb4098107", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O75417.json", "taxon_id": "9606", "uniprot_accession": "O75417", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7898-pf25453.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25453", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7898-pf25453.yaml" } ], "pfam_ids": [ "PF00270", "PF00271", "PF00476", "PF20470", "PF21099", "PF25453" ], "protein_name": "Helicase and polymerase-containing protein TEBICHI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MDSDSSKSRIDQFYVSKKRKHQSPNLKSGRNEKNVKVTGERSPGDKGTLDSYLKASLDDKSTTNSGLQARQEAFTRKLDLEVSASSVGQNIHPCLPKPVSFATFKECLGQNGSQDLHKEGVAAETHATDGLLCANQKDNSELRDFATSFLSLYCSGVQSVVGSPPHQKENELKRRSSSSSLAQDIQISHKRRCESENIPSLDDLTNPLGSKPESLARNGNNRDKPVSDPTKKMPSNESVEIPMGLRKCSKAPESSAHLTEFHTPGSAIKSCPVGTPKSGCGSSMFSPGEAFWNEAIQVADGLTIPIENFGSVEAKVRDQHVTILSCSKKTDKCTEKLERSLDLDEIRVKDKDAIGFSKVVEKHGRDFNKEVYQLPVKNLELLFQDKNINGGIQERCASFDQNNITLGSSRISESAFVGNKGCENLDIANNAQADKGLIGKMYPEPEGKKVLLCEENRGVRSVSMISNMRKPVGSSESEESHTPSSSHRNYDGLSLSTWLPSEVCSVYNKKGISKLYPWQVECLQVDGVLQKRNLVYCASTSAGKSFVAEVLMLRRVIRTGKMALLVLPYVSICAEKAEHLEVLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSELGIIVIDELHMVGDQHRGYLLELMLTKLRYAAGEGSSESSSGESSGTSSGKADPAHGLQIVGMSATMPNVGAVADWLQAALYQTEFRPVPLEEYIKVGSTIYNKKMEVVRTIPKAADMGGKDPDHIVELCNEVVQEGNSVLIFCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIRSAIDALRRSPSGVDPVLEETLPSGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPMIGRDFIDGTRYKQMSGRAGRTGIDTKGDSVLICKPGELKRIMALLNETCPPLQSCLSEDKNGMTHAILEVVAGGIVQTAKDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEETKLYTTTPLGRGSFGSSLCPEESLIVLDDLLRAREGLVMASDLHLVYLVTPINVGVEPNWELYYERFMELSPLEQSVGNRVGVVEPFLMRMAHGATVRTLNRPQDVKKNLRGEYDSRHGSTSMKMLSDEQMLRVCKRFFVALILSKLVQEASVTEVCEAFKVARGMVQALQENAGRFSSMVSVFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTSIPYIKGSRARALYKAGLRTSQAIAEASIPEIVKALFESSAWAAEGTGQRRIHLGLAKKIKNGARKIVLEKAEEARAAAFSAFKSLGLDVNELSKPLPLAPASSLNGQETTERDISRGSVGPDGLQQSIEGHMECENFDMDNHREKPSEVLGDATLGVSSEINLTSRLPNFRPIGTAVGTNGPSAVSILSSDTFPIPVYDNREIKPKDNVEQHLTRNDHIPLSSNKDGTGEKGPVTAGNISGGFDSFLELWGSAGEFFFDLHYNKLQDLNSRISYEIHGIAICWNCSPVYYVNLNKDLPNLECVEKQKLIEDAVIGKSEVLASHNMLDVIKSRWNKISKIMGNVNTRKFTWNLKVQIQVLKSPAISIQRCTRLNLPEGIRDELVDGSWLMMPPLHTSHTIDMSIVIWILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGRWRNQIRRVAHNGCCRRVAQTRALCSALWKILVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGCLRARNILRDKLRSLEKKAFELAGMTFSLHNPADIANVLFGQLKLPIPENQSKGKLHPSTDKHCLDLLRNEHPVVPIIKEHRTLAKLLNCTLGSICSLAKLRLSTQRYTLHGRWLQTSTATGRLSIEEPNLQSVEHEVEFKLDKNGRDVSSDADRYKINARDFFVPTQENWLLLTADYSQIELRLMAHFSRDSSLISKLSQPEGDVFTMIAAKWTGKAEDSVSPHDRDQTKRLIYGILYGMGANRLAEQLECTSDEAKEKIRSFKSSFPAVTSWLNETISFCQEKGYIQTLKGRRRFLSKIKFGNAKEKSKAQRQAVNSMCQGSAADIIKIAMINIYSAIAEDVDTAASSSSSETRFHMLKGRCRILLQVHDELVLEVDPSYVKLAAMLLQTSMENAVSLLVPLHVKLKVGKTWGSLEPFQTD", "sequence_length": 2154, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a88f317f57d50adeeda8ff8019f356ed9927c5e774a023536dae8bbf7e8c76a2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q588V7.json", "taxon_id": "3702", "uniprot_accession": "Q588V7", "uniprot_release": "2026_03" } ], "pfam_id": "PF25453", "short_name": "DUF7898", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25463", "short_name": "DUF7899", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25464", "short_name": "DUF7900", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25470", "short_name": "DUF7901", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25472", "short_name": "DUF7902", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25475", "short_name": "DUF7903", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25480", "short_name": "DUF7904", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Schizosaccharomyces pombe (strain 972 / ATCC 24843)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7905-pf25482.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25482", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7905-pf25482.yaml" } ], "pfam_ids": [ "PF25482" ], "protein_name": "Uncharacterized protein C582.04c", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAENKKFSIRKKRECSYPTFRTLYEFNKFFLRYKTEISKIQRRTSSLIQYEEHSSAIFIYYETPQMFDLATKALQTLYNSHTREGETKAASKWYRNPRKDFPSQEAALVRKKKRDALILKKYLLNVDPSLSFRAEGLFTLPSDDLDVYEFFGGENLTLFNQVRVDCQCYIHYLPKLAAFYVRCDSVKNLKVALKRVKHIFYEQVSLIRLERTQPILHLMNFDDYSTSYELFYDRNFPLAKKYKPNSIYLHRLPESIPTPVDSVKINLIRERSFNLLKNFVSASLFNVFLFSGTVFMRVKVGIPLFERLKVGTNKVKNNSVNIAQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTGEKLFESFSDDPITAVHFEVMNCKGVQDTLTAIWNTNSGKPSGWYLESTMYKALDVTYYNLNTLSWNLYIEYGHPTQNSTFYKEFISNISMSDDGRIYFMNTRDIKVRSLVVKLKHKYWHLSSGFHLHITRFEAHDMGKVKDIDTDFEPGLQCYQVGSDTSVLRYGLSFWDPKWDYLLADNQHKQQWQAPSYKPLISEFFPMGIEHFIETAQSIVMAVNRSTID", "sequence_length": 583, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "486fc584f7c670a87df96eed932e359d4fee8a1a675fe4fcb830f4a4ae2ae401", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q10338.json", "taxon_id": "284812", "uniprot_accession": "Q10338", "uniprot_release": "2026_03" } ], "pfam_id": "PF25482", "short_name": "DUF7905", "status": "HAS_SEQUENCE_EXAMPLE", 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"qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07773", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tctn-duf1619-pf07773.yaml" } ], "pfam_ids": [ "PF07773", "PF25752" ], "protein_name": "Tectonic-2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGFQPPAALLLRLFLLQGILRLLWGDLAFIPPFIRMSGPAVSASLVGDTEGVTVSLAVLQDEAGILPIPTCGVLNNETEDWSVTVIPGAKVLEVTVRWKRGLDWCSSNETDSFSESPCILQTLLVSASHNSSCSAHLLIQVEIYANSSLTHNASENVTVIPNQVYQPLGPCPCNLTAGACDVRCCCDQECSSNLTTLFRRSCFTGVFGGDVNPPFDQLCSAGTTTRGVPDWFPFLCVQSPLANTPFLGYFYHGAVSPKQDSSFEVYVDTDAKDFADFGYKQGDPIMTVKKAYFTIPQVSLAGQCMQNAPVAFLHNFDVKCVTNLELYQERDGIINAKIKNVALGGIVTPKVIYEEATDLDKFITNTETPLNNGSTPRIVNVEEHYIFKWNNNTISEINVKIFRAEINAHQKGIMTQRFVVKFLSYNSGNEEELSGNPGYQLGKPVRALNINRMNNVTTLHLWQSAGRGLCTSATFKPILFGENVLSGCLLEVGINENCTQLRENAVERLDSLIQATHVAMRGNSDYADLSDGWLEIIRVDAPDPGADPLASSVNGMCLDIPAHLSIRILISDAGAVEGITQQEILGVETRFSSVNWQYQCGLTCEHKADLLPISASVQFIKIPAQLPHPLTRFQINYTEYDCNRNEVCWPQLLYPWTQYYQGELHSQCVAKGLLLLLFLTLALFLSNPWTRICKAYS", "sequence_length": 697, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "79d2251d20069d0fc54a7f284f7051c3f7cee31af6d507ec0857ed8e6d90841d", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q96GX1.json", "taxon_id": "9606", "uniprot_accession": "Q96GX1", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Drosophila melanogaster", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/function/pathway/go/y-shaped-link-assembly-go1905350.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "GO:1905350", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/y-shaped-link-assembly-go1905350.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tectonic-1-3-domain-ipr011677.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR011677", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tectonic-1-3-domain-ipr011677.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/tectonic-1-3-n-terminal-domain-ipr057724.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR057724", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/tectonic-1-3-n-terminal-domain-ipr057724.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/tctn-duf1619-pf07773.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF07773", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/tctn-duf1619-pf07773.yaml" } ], "pfam_ids": [ "PF07773", "PF25752" ], "protein_name": "Tectonic", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKEVLPLVVLCLATYHTHSIKIGISHNYNATISPTASTTTEAPATTGAPSSETVSSISTLPEAEVTTTTPAITFPPRVQQKPKVAVASPTMSTALPLNSTEVNSTLSVSGDNTFYYCSCDLQAGRCDLNCCCDNDCPLETRQVFNCLPNSLLPQLESRLEDFQYTHGLPTCQINDGWLCVFRSNTKATKTQPPDMNIDTSQYRKWKDNLEYQESDYAQSRPSAGHYKFGQTLQLWQPETKQLATLELPAAYESPNCQLKQSVWHLQPIRHVCRMKDSAQLQESIWSLLNQTSNYEILSKPRDLEEPEVNGLIVQVCLRGANKSMRCLERGNDTQLDVIVDHVELQLIHNFTNILEAKLFLEEAKLAEDDNEPLWLRYNVEFVTLNESLTKPTSGPLGYLSGAPVILSRMLPQNSSEDKQLISYHSLNQNIKEFHWLSLPSRKPRGSSCQRALDHKEALRFGIDLLTRCELRHAAPLLQAHANHTEYCQGLQAQIWSLLLPHNCTQLEDVTKVFVSHLGRPQPDKWLPMEVRYPENVHEMPPPVQAVYDEMRQSLSCRNIFLSVGYEFHVAHLAMVEGRAPHQRVLQHARLVLGQRHDLEFDTSEIEVALPLSISAMFYRMQTKALSNGAAVGIAGHLVLVEMIYLGIIYLGSMQLCL", "sequence_length": 657, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0c9947f5a781b2444cb9887d62d1ce3f5b081a3661f86b9e44d02d2619e5ae67", "sequence_version": 4, "source_url": "https://rest.uniprot.org/uniprotkb/Q9VMH0.json", "taxon_id": "7227", "uniprot_accession": "Q9VMH0", "uniprot_release": "2026_03" } ], "pfam_id": "PF25752", "short_name": "DUF1619_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25778", "short_name": "DUF7948", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25820", "short_name": "DUF7949", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25821", "short_name": "DUF7950", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25824", "short_name": "DUF7951", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25826", "short_name": "DUF7952", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF25829", "short_name": "DUF7953", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Treponema pallidum (strain DSM 117211 / Nichols)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7954-pf25843.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25843", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7954-pf25843.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7955-pf25844.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25844", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7955-pf25844.yaml" } ], "pfam_ids": [ "PF25843", "PF25844" ], "protein_name": "Uncharacterized protein TP_0159", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYIKVALVCLFSMGARCLLATEPAPVSGDYVLYRDYSWKSPTWVGFLCYDAHTYGALLCTPAESRRITILFTGTEKHGRFELTGQRITSPVRTEDLTGINYLMDLFPQLQRWKHFPRDTHTLVARHTDRSKKSTQFSGAVELQFASFVPLFHLEILRDKQQRVMLQLSEIGKIDHTSDAAFFQFTPMPPSTPTDAPPATLNQTLTRTEYVIDDVCIALDPQWKRIAENSFLSDFAFLTVHQVPAPRAHDYSALRALLQLFLYSGPQGKNILEQLHINDTHARLTLSYAVFDLPSKTVKKTWKIFIRHSDTHYSILSLTADQRTAQRYARYFDTLIETIRTKN", "sequence_length": 342, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "24dda45d1548d3015b3dd38c35fbc043029ec3981766e5e5f21fe7e949c398e7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O83194.json", "taxon_id": "243276", "uniprot_accession": "O83194", "uniprot_release": "2026_03" } ], "pfam_id": "PF25843", "short_name": "DUF7954", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Treponema pallidum (strain DSM 117211 / Nichols)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7954-pf25843.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF25843", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7954-pf25843.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7955-pf25844.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25844", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7955-pf25844.yaml" } ], "pfam_ids": [ "PF25843", "PF25844" ], "protein_name": "Uncharacterized protein TP_0159", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MYIKVALVCLFSMGARCLLATEPAPVSGDYVLYRDYSWKSPTWVGFLCYDAHTYGALLCTPAESRRITILFTGTEKHGRFELTGQRITSPVRTEDLTGINYLMDLFPQLQRWKHFPRDTHTLVARHTDRSKKSTQFSGAVELQFASFVPLFHLEILRDKQQRVMLQLSEIGKIDHTSDAAFFQFTPMPPSTPTDAPPATLNQTLTRTEYVIDDVCIALDPQWKRIAENSFLSDFAFLTVHQVPAPRAHDYSALRALLQLFLYSGPQGKNILEQLHINDTHARLTLSYAVFDLPSKTVKKTWKIFIRHSDTHYSILSLTADQRTAQRYARYFDTLIETIRTKN", "sequence_length": 342, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "24dda45d1548d3015b3dd38c35fbc043029ec3981766e5e5f21fe7e949c398e7", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O83194.json", "taxon_id": "243276", "uniprot_accession": "O83194", "uniprot_release": "2026_03" } ], "pfam_id": "PF25844", "short_name": "DUF7955", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf7956-pf25845.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25845", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf7956-pf25845.yaml" } ], "pfam_ids": [ "PF25845" ], "protein_name": "Protein Rv0740", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTGPPRSYTGRRDLIAEKLEPYFQISAMLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLECPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG", "sequence_length": 202, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e4b6a7b0e03e0326971f9a7bb5ab1caeae34bf3f662a242784a1d714e74db6f6", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/O53803.json", "taxon_id": "83332", "uniprot_accession": "O53803", "uniprot_release": "2026_03" } ], "pfam_id": "PF25845", "short_name": "DUF7956", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6242-pf19755.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6242-pf19755.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf6242-c-pf25852.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25852", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/repeat/pfam/duf6242-c-pf25852.yaml" } ], "pfam_ids": [ "PF19755", "PF25852" ], "protein_name": "Outer membrane protein assembly factor BamI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MCKKHFIRYFFWTIIVFFVGAAIHSCKESKIDLEEVSIVDLQIHRFYLSSKKNPDLEKVFFSIDHAKGTIINKKYMPYGTVLDSVMMKLVTDFSAKKLRVAINDGEYKDWHNKDSLWLRDCHTLHLMVFDESGEKTKKYTVTLNRYDYQPTTFVWHMLDGVALPDINASFVDVVTHADKVYLVAATGNKTLLYSSDRKNPVHWTLLSSSGLSGACRQIAATEDGRAWILTDSGIYQSDDFTNWSLLPSEVPVTTLLGAMAWPQGSHTLALLAEKEGSLFFATNIDGIHSWQEQAPETFPVRNFSTQLYKANNHPMLRLVGGVTHTGAPATSVWITSNGNDWFGLDLAAGAIPASMEKGALVQTPSDGNLYYYATEQAEGIKRVAVAD", "sequence_length": 387, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "f214d341c544c55b9dc25acf28209ca6ce930fde75ebb2419ed4ac13921624f3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/B2RHH0.json", "taxon_id": "431947", "uniprot_accession": "B2RHH0", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf6242-pf19755.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF19755", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf6242-pf19755.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/repeat/pfam/duf6242-c-pf25852.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF25852", "section": "canonical_examples", "url": 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"1276141", "uniprot_accession": "A0A0B4GDU5", "uniprot_release": "2026_03" } ], "pfam_id": "PF26053", "short_name": "Arp1_N", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26056", "short_name": "DUF8017", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Arabidopsis thaliana", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf8018-ipr058331.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR058331", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf8018-ipr058331.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8018-pf26057.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26057", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8018-pf26057.yaml" } ], "pfam_ids": [ "PF26057" ], "protein_name": "Uncharacterized mitochondrial protein AtMg01010", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIGGDSVEAIERRLLAKYPEGSPSAEIIEMARIEAEDLFEIKAQIIQRMALYDPTGDWMARGARALDNPRTTSGEESLERLYDIWKDLQETGPLSDEFSRLQEKVFLKKGGPGGDPIA", "sequence_length": 118, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2f8f2d79a7d2a90402d31002a6440cd839c4f093726121766d1ec9b118154398", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P92535.json", "taxon_id": "3702", "uniprot_accession": "P92535", "uniprot_release": "2026_03" } ], "pfam_id": "PF26057", "short_name": "DUF8018", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26058", "short_name": "DUF8019", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26059", "short_name": "DUF8020", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26061", "short_name": "DUF8021", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26062", "short_name": "PccX", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26064", "short_name": "VP3", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf8024-pf26067.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26067", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf8024-pf26067.yaml" } ], "pfam_ids": [ "PF26067" ], "protein_name": "Uncharacterized protein NP_1057A", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVEIQTGLRENTVGAVEQFAEIASIDPLVASMILSGAIIITVAVVAFGALTLGAIGASIKRGLSGSEEPNQPA", "sequence_length": 73, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8bbbc8af2fe245e551630815e5f1e85218171e02aef9c26440d2fce2a75fda78", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q3IUT9.json", "taxon_id": "348780", "uniprot_accession": "Q3IUT9", "uniprot_release": "2026_03" } ], "pfam_id": "PF26067", "short_name": "DUF8024", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26068", "short_name": "DUF8025", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26069", "short_name": "DUF8026", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26070", "short_name": "DUF8027", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26071", "short_name": "DUF8028", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26072", "short_name": "DUF8029", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26073", "short_name": "DUF8030", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26081", "short_name": "DUF8031", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 4, "discovery_scanned": true, "example_count": 4, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Fusarium pseudograminearum (strain CS3096)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8032-pf26087.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8032-pf26087.yaml" } ], "pfam_ids": [ "PF26087" ], "protein_name": "Global regulator laeB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGLLSMQHHPQHQQQGHPPSQHLQHSRPPSVVHQQHHAQPHPPPQQQHQSAYSSTHSLPQGYQASGQAPSNQDNLNYYNHPSPYSTPGATSGYTSADTSDMMAAAQMPRPPYPPMSYHTPQSNSPASVASPSQHDQHRSIYGQPPSQHMQQSMYYQPQNQYQTMPPQATASPYAQHAPHPQQSMTSQPAMMMSQTAPQNQMTQHAAQHAHAGMTGSPRPKIEPQVPLQLQKPQSSPMQQAHHPQNGGQLQSPGNTTPGVNPSAAPGPIPATTPLVVRQDGNGVQWIAFEYSRDRVKMEYTIRCDVESVNIDELSPEFKQENCVYPRACCPKDQYRGNRLMYETDCNRVGWALAELNIPLRGKRGLIQRAVDSWRNSNQDPRLRSRRVRRMAKMNQRKQVQASPHPGAAHMPGPSGPSGMPGGPGPMGPSPASMGKPALGSMGQPMHHHQPGAHPDGSGQGGQDEVGDGNSYEHHHHQAPTAQNPSSNDDVRPAHVFTGYNNQPYPTSAPMSHMAPHSGGAVPAKRHSRANADEPDDLFPDIPEAKKRKFILVEDNVRGSRLRVRVTLEGVDTNEIPDSFRKGASVFPRSYFPREMQSPPPSATGSRFFGDDQDDDGIEETEGRESSRRGVNRSGKEMVKVPMGESTGEIAIPRMRKSIRGREVRLNDLGYRMAWLQSRVFAGRTVFLQRALDCYRNKTRAAIESVMQDVKTVAPHYETRAGKRRWNERMRRGEKKDDE", "sequence_length": 738, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8070183a81d7d9a055a18d51cc6f9856fd1c6df06a1b13f4b3a8aa98eb20e065", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/K3VDG8.json", "taxon_id": "1028729", "uniprot_accession": "K3VDG8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)", "origins": [ { "cited_uniprot_accession": "Q4WUK4", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/polyketides/endocrocin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:64450", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/polyketides/endocrocin.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8032-pf26087.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8032-pf26087.yaml" } ], "pfam_ids": [ "PF26087" ], "protein_name": "Global regulator laeB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MASTAQMQRPYPPIYHTPQSSSPASVASQTHDQHSRGLYAQSPQMAPQMYGYQPYPSINPVQPPPYTAHTSSQQHPLTSQSMILPHTSTAQLSHQPPQAPSVTMASSPIAVTASQQTPPQRAVMSPPHSASAGGPLSANSIHHTTPSVGASSSAAPGPIPATTPLVVRQDSNGVQWIAFEYSRDRVKMEYTIRCDVESVNVDNLSQEFKTENCVYPRACCSKDQYKGNRLVYETECNAVGWALADLNPALRGKRGLIQRAVDSWRNSNQDPRLRSRRVRRMAKLNRRQGLSAQPPTHMAAASPVPQDISGGLAAPSPRPGLGPLPMGPPQLHHHHAQPEGSGSNEDVSGTTEFSNSTDRQPGVEAPLTSGHTTTDIRTAQVFHGYPTFPTSASAGGGSRGPSIPPLIRDSGLGSLGRHSAVATSVHKTEVEDDDDERNPSHEALFGALTDGMRRKFILVDDPQRGCRVRVKVMLDQVNLNEIPDSYRMSNSVYPRTYFPVQMKHPRGREVPGRRYFKDDHQTDDDQETATVGRVLVPVPQADDGGEIAVPKLTRGRHRKEVLLNDLGYRMSWSQSRVFAGRPLFLQRSRTLLSHLPPSLLWRTHIRLYQ", "sequence_length": 609, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "8ee21a68113b38491553e253d4df9b9b306cfedc1b8de3e7cb53ac869f8c1ac6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q4WUK4.json", "taxon_id": "330879", "uniprot_accession": "Q4WUK4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)", "origins": [ { "cited_uniprot_accession": "Q5B431", "commit": "e66f934111777c4ebfe69475d0520c0cfa074785", "link_basis": [ "uniprot_pfam_xref" ], "mech": "NaturalProductMech", "path": "data/natural_products/polyketides/asperthecin.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "CHEBI:64161", "section": "uniprot_accession", "url": "https://github.com/CultureBotAI/NaturalProductMech/blob/e66f934111777c4ebfe69475d0520c0cfa074785/data/natural_products/polyketides/asperthecin.yaml" } ], "pfam_ids": [ "PF26087" ], "protein_name": "Global regulator laeB", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MATTQMHRPYPPIYHTPQSSSPASVASQPHEHNRSLYTQSPQMTSTIYGYQQALSALPVQPSPYGAHPSPQQHPLTTQSLMMSHQTSTSQLQHQSSQAPTAALTSPTTATVQQATPSQRALLNPPHPATSAPLQPSNSNHQSSNIGTSSSAAPGPIPATTPLVVRQDSNGVQWIAFEYSRDRVKMEYTIRCDVESVNVDNLSQEFKAENCVYPRACCSKDQYRGNRLVYETECNAVGWALAELNATLRGKRGLIQRAVDSWRNSNQDPRLRSRRVRRMAKINRRQGALPAPPPQHMAPTTGVPPGVSSSSIAPVGPRPSLGPLSAMGPPQLHHHHAQPDGPIHEEASGSADYASGTHRPLPPAPSSSGHSPTDIRNAHVFHGYPTFPLSANSSSGHRGPSIPPLLRDNGLGSFGRNPAVATSGRVEEIEDDEHDPNKDDLFGTLPEGKRRKFILVDDTQRPGCRVRVKVMLDQVDMDEIPDSYRMANSVYPRTYFPVQMKTPRGQGLPGDRYIKDDTQINDVDEDEATVGRTMVPAPQVDDESEIAVPRISRRRHRKEVLLNDLGYRMSWSQSRVFSGRMLFLQRSLDAYRNKMRSTMLAAGQNENSIPPHFETRAGKRRFLERRKRAAMSRDTEHTVSASQHDAEEIEP", "sequence_length": 650, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "7a0e9cca02c97fd5b62ea11fa2a909b402b129eae89ad71385e28e05c6a269b9", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q5B431.json", "taxon_id": "227321", "uniprot_accession": "Q5B431", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pestalotiopsis fici (strain W106-1 / CGMCC3.15140)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8032-pf26087.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26087", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8032-pf26087.yaml" } ], "pfam_ids": [ "PF26087" ], "protein_name": "Global regulator rsdA", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MVVASMQHHPHHSQGPAPPQHLQHPRPSSIVHQQHHQAPPPQSQHPSAYSSYQPAGQTQGSQHGHAQEGLPYYAHPSPYSTPGTTSGYPAADTSDMMAAAQMPRPYPPIYHTPQSNSPASVASPSGHDQHRSLYGAAAPSIQQQQSMYYSAQQPYSSMPQQAAPSPYQQHAQQPQHSMTSQPNMMMSHPGSQHPIQQHTNQHAQQGLNSPRHTKIETQVPPQLQRPASGPLGTPQHNQNGSGPLSTPGGSSPGVNQNAAPGPIPATTPLVVRQDNNGVQWIAFEYSRDRVKMEYTIRCDVESVNTDELPSDFKTENCVYPRACCPKDQYRGNRLQYETECNTVGWALAQLNPSLRGKRGLIQRAVDSWRNSNQDPRLRSRRVRRMAKMTNRKAVQTPHPSHMSGPSGPAGIPAPGAMGPGGGTAMGKPGMSNMGSHMHHHQGHSDGNSQGGEEVGDGEYMDEGHHHHHQAPSGPGSGHGDDVRQAQVFSGYPQPYPGTSASGPGMPHSSHHNAIAARHSTRDDDEAPEGLFPDIPDAKKRKFILVDDNKRGGRLRVRVTLENVDTKEIPDSFRKSSSVFPRSYFPREMQSPPPSATGSRFFENDLEDDDVEVEGGRTGRSRAAGRVMVKVPFSDGSEDQIAIPRTRKSTRGKEVRLNDLGYRMAWLQSRVFSGRTIFLQRALDCYRNKTRNAIESVMQDVKTTAPHYETRVGKRRWSERMRQSTDKRDDE", "sequence_length": 730, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "b4c21169123fa57750af9213a84a3e969c5c5f983cf2e178d7caa20259734596", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/W3WX91.json", "taxon_id": "1229662", "uniprot_accession": "W3WX91", "uniprot_release": "2026_03" } ], "pfam_id": "PF26087", "short_name": "DUF8032", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26096", "short_name": "DUF8033", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26099", "short_name": "DUF8034", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26118", "short_name": "DUF8035", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26119", "short_name": "DUF8036", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": 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"MWKEKVRDNILGEVIDWKALIDSLKKERFTGYIKVESWDETDYVILAEGSVKKIVRHKDNKKTFLDTSNYTPSSESKISVYKSSPLTTAHICKDLNFFEYQTLSLSGYGEEIFHSELNLVNPEKLETFFQKVNLNGYAVIYTYTSIYCNVFLLQGHLVGINGGNTWDSEVPSQKDLWQGKVFLSAYFIEPDEVLLLISLKRGFKEKNELNGNGFFVNGNYVGFVENGNIKKGLLILPEEIVETQEVKGEKFLEVNLIENPERLEISFKDLIPKEEKKIKPDVPLKVREIFLDYIGPVGKILWDKVLQELDISPEEFTHPTFRMFINRLAQEIPEEDLSKEFLNKAWEVLDESTST", "sequence_length": 355, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e811ee1e6d47dd4859add701e4f644f745c4a76a0c6416a5d934e15b2a764d83", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O67685.json", "taxon_id": "224324", "uniprot_accession": "O67685", "uniprot_release": "2026_03" } ], "pfam_id": "PF26309", "short_name": "DUF8082", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces fradiae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8083-pf26312.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26312", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8083-pf26312.yaml" } ], "pfam_ids": [ "PF26312" ], "protein_name": "Uncharacterized 32.3 kDa protein in vdh 3'region", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGLASSLFVPYAAYLRVYEPLAAFPEPERSHWYRYAGRADPPTAQDELRRSLVDLLPTPPVAVPVHESGDAFVAVVDGVTCVCPWRTRLRGWEALEALPELLPAPVLDAALPQVVRRQAADDHERWRERNPDARPWIRTATWHVPVRWFALFTAGEREYVQRSGEGEKAERPVLRYRTPMVEARRRVARGLRVLREALNESPLIDGLEDVGRWLEEFHPRSLVELDYGGLVHALTDDWLAGDRSAADVTEGLEALRAGDGVRAGEVYQRLVERWRAVREREFAS", "sequence_length": 284, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "599c3aae7f45a3d369b0382ffe4e46ba5e59f983a7b9bd98423961de778ccfad", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/P40177.json", "taxon_id": "1906", "uniprot_accession": "P40177", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8083-pf26312.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26312", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8083-pf26312.yaml" } ], "pfam_ids": [ "PF26312" ], "protein_name": "Uncharacterized protein SCO4090", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MPKVSSVIVPYAAYLRVYEPLAAFPDEERAHWTRYARRPGRPSYQDELRRSLADLLPTPPVAVPVHESADAFVTEVDGVVCVCPWRTRLRGWQALGEVAEDFPEPVLDALIPPVVRRQSAQDYERWLERNPDARPWIRTATWQVPINWFVLVSDAEREYDEGGGDEAATAPVLRYRTPMVQARRRVARGLRALREAVDEGPLIDGLVDVGRWLEEFHPRSLVELDYGGLVHALPAGELEADHSAADVAEGIEALRHGDGVAAGAAYGRLVERWRAVRDRRSAN", "sequence_length": 283, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "3106c1a6640229742cf072efb6c87f8229ce8eeee75aa1008150f4b57744773a", "sequence_version": 3, "source_url": "https://rest.uniprot.org/uniprotkb/Q06542.json", "taxon_id": "100226", "uniprot_accession": "Q06542", "uniprot_release": "2026_03" } ], "pfam_id": "PF26312", "short_name": "DUF8083", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Treponema pallidum (strain DSM 117211 / Nichols)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf8084-pf26329.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26329", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf8084-pf26329.yaml" } ], "pfam_ids": [ "PF26329" ], "protein_name": "Uncharacterized protein TP_0466", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSSKHKRRILNLPLKLVLTQEGSEFFIKQNRKLMKLKLAEHVEDYGIALDAFAPKTVQGLLLSGYVSLIEVSPPEFASSRQEIIDLSKLIVHSILYRQYDCYVFRQILNSEVIKKWNRSNPGSSIDEHANLNAPFIYNHLKQHEAHVTQIKHHILRLLHASLAACEERTPKEKNTLLFLGEKFLDTLRPFTWFIISKFQHAPDMGSVLSSIHTSLAQYLNKARIAEYIALVLVELLINEENTNLKKEVQKLFPDLEDAQEALCDEGIRRRIVAELKHNAESLFISWKLQGRSVSTAGTRRKLKITVYGRNDYPQEMRNCLQDAKVVNADTDTLVDYCQQTIDTAKHANLGVYYISYLSEACKEANVRFESSLNRFTRSEFTTVDLSFEF", "sequence_length": 389, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "e393e5efc63a611ac787b5efc8b4e5bf2d5f01a33e92e2a5dd52ba220f1cd55b", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O83479.json", "taxon_id": "243276", "uniprot_accession": "O83479", "uniprot_release": "2026_03" } ], "pfam_id": "PF26329", "short_name": "DUF8084", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf8085-pf26330.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26330", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf8085-pf26330.yaml" } ], "pfam_ids": [ "PF26330" ], "protein_name": "Probable lipoprotein CT_734", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKFIYKYSFGALLLLSGLSGLSSCCANSYGSTLAKNTAEIKEESVTLREKPDAGCKKKSSCYLRKFFSRKKPKEKTEPVLPNFKSYADPMTDSERKDLSFVVSAAADKSSIALAMAQGEIKGALSRIREIHPLALLQALAEDPALIAGMKKMQGRDWVWNIFITELSKVFSQAASLGAFSVADVAAFASTLGLDSGTVTSIVDGERWAELIDVVIQNPAI", "sequence_length": 221, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c97edb68cf8e2a03bef99970758cd256d86de3dc947139a3f376a9c2c5cfffde", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O84739.json", "taxon_id": "272561", "uniprot_accession": "O84739", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia muridarum (strain MoPn / Nigg)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf8085-pf26330.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26330", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf8085-pf26330.yaml" } ], "pfam_ids": [ "PF26330" ], "protein_name": "Uncharacterized lipoprotein TC_0107", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKKFVYKYSFGALLLLSGLSSCCPSSYGSTPAKNTAEIKEESVILREEPESGCKKKSSCCLRKFFSRKKPKEKPEPVLPNFKSYADPMTDAERKDLSFVVSAAAEKSSIALAMAQGEIKGALSRIREIHPLVLLQALAEDPALIAGMKKMQGRDWVWNIFMTELSKAFSQAASLGAFSVADVAAFASTLGLDSGTVTSIVDGERWAELIDVVIQSPTI", "sequence_length": 218, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "aab7c04c7088442925552b6a3d1b97e89113cdb02843c2f47e8856e38f36b534", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9PLJ2.json", "taxon_id": "243161", "uniprot_accession": "Q9PLJ2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Chlamydia pneumoniae", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf8085-pf26330.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26330", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf8085-pf26330.yaml" } ], "pfam_ids": [ "PF26330" ], "protein_name": "Probable lipoprotein CPn_0875/CP_0994/CPj0875/CpB0904", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKRVIYKTIFCGLTLLTSLSSCSLDPKGYNLETKNSRDLNQESVILKENRETPSLVKRLSRRSRRLFARRDQTQKDTLQVQANFKTYAEKISEQDERDLSFVVSSAAEKSSISLALSQGEIKDALYRIREVHPLALIEALAENPALIEGMKKMQGRDWIWNLFLTQLSEVFSQAWSQGVISEEDIAAFASTLGLDSGTVASIVQGERWPELVDIVIT", "sequence_length": 217, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4769b79e338ca174bbf53f12c97b5b2d4bb509ab60fbdd508e5ce59deb90c047", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Z731.json", "taxon_id": "83558", "uniprot_accession": "Q9Z731", "uniprot_release": "2026_03" } ], "pfam_id": "PF26330", "short_name": "DUF8085", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Treponema pallidum (strain DSM 117211 / Nichols)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf8086-pf26331.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26331", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf8086-pf26331.yaml" } ], "pfam_ids": [ "PF26331" ], "protein_name": "Uncharacterized lipoprotein TP_0456", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTRLALVLCAVGSGVLSFSCARTAEPTPAASTHVPVTTAGALSVTPPSSTDRWYQFSRTDGRVHLRACPAPSQPSAPEHFVPWTEAVRLSAVDAQQELLLINRAGVLPATQLARMQTAPVPRKAPSTPAAETTSLTLTPPALLATQSAEGFYSEPIPNSSPHPCQGTGAVFVRLYTDPLFTTSPQDSAAPFLVRYDVRTARWTSVAYTRALGLPRNAQCTALTHTRGTWYASFKSSEAERVSFAYFSFPSLSSLENLGPTQRREHPIGGKVQVPRPISAAAFRAACTPQRLHLPTASTSSDHHSDLHELLVHRLLARVPLSPLYLSARSPCWASDRSFLKTAHRTADERAHHANALIFHPPRARLSAALLTDSGHLYFVREDGSEGHARLSALPPQFVYTSFTLSGPSLIAGWEEQDFFQVGSTGLLCTEVESLTGT", "sequence_length": 438, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "c79422744f4bf1a52a5f22218fbefe5d64c13ffc886de6e49ec5dbd08ab91d8c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O83469.json", "taxon_id": "243276", "uniprot_accession": "O83469", "uniprot_release": "2026_03" } ], "pfam_id": "PF26331", "short_name": "DUF8086", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Escherichia coli", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8087-pf26332.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26332", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8087-pf26332.yaml" } ], "pfam_ids": [ "PF26332" ], "protein_name": "Protein ORFg in retron Ec67", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNNIPPIPQLGIYVSKIDPTLRITVTDVDIVDGEDDSPDDELFYLVHWIEGEDESDMTAMGFELDPVEWQAFVESEQLVFERESVHGFNPRKFKLGKDSGFSHED", "sequence_length": 105, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "694ec247bd9efd2234d91893cd6599827bbc820ee54afa83f1f9d5ee26e16859", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P21321.json", "taxon_id": "562", "uniprot_accession": "P21321", "uniprot_release": "2026_03" } ], "pfam_id": "PF26332", "short_name": "DUF8087", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus anthracis", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8088-pf26338.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26338", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8088-pf26338.yaml" } ], "pfam_ids": [ "PF26338" ], "protein_name": "Uncharacterized protein pXO2-31/BXB0029/GBAA_pXO2_0029", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MNTITIKFGEGTAAWKDMQEVVKILNDKGYSTQPYGDIGTVKLTKVIEEGMKVSTEEKIAEPDPAAMNKTKEGTFKRILVEANYPWELIKDWTEEDCEAELGAIERANK", "sequence_length": 109, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "6ecdcb5f9e36b3e92c161820b0688d41357d7bd7993fb63c010299d8cf65fc8f", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RN01.json", "taxon_id": "1392", "uniprot_accession": "Q9RN01", "uniprot_release": "2026_03" } ], "pfam_id": "PF26338", "short_name": "DUF8088", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Aquifex aeolicus (strain VF5)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8089-pf26339.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26339", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8089-pf26339.yaml" } ], "pfam_ids": [ "PF26339" ], "protein_name": "Uncharacterized protein aq_820", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MQLKTEVFLVEKEILVYIQTKSIGIEDNSIKLKMTPLLKKFANIGDKVYLKHSTFMLPTKIKAKKEDEVLLEFPSLTPEKPLGDRRNVRVLSDPENPVKVRFNEITKEVYDISEVGFSIKCGMEEIDEILKNKEISEVEIYLPNLEEWIKGSARLVNVREFENGDILCGYELFLDTPDEVKVRFYIYERVKEILKGEK", "sequence_length": 198, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "19c70fbb0a0927320faefdc12d1281fa02aca363be116cd2b0a368284a2996a3", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O67001.json", "taxon_id": "224324", "uniprot_accession": "O67001", "uniprot_release": "2026_03" } ], "pfam_id": "PF26339", "short_name": "DUF8089", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26350", "short_name": "DUF8090", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Treponema pallidum (strain DSM 117211 / Nichols)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8091-pf26351.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26351", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8091-pf26351.yaml" } ], "pfam_ids": [ "PF26351" ], "protein_name": "Uncharacterized protein TP_0665", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MTINTCRETGLHRALKDYFSPRGSRQEVELRGSICDVVHPDGTIVEVQTSGLGRLEAKLKKLLPYHQVMVVYPVSRRLYIRMLNEDGSERHYRKSPKEGSFFQIYREIGRLHDLLDHEHLSLHIVYIHSEVIKVDDRKGRSRYKKPRIVDRKLLEVQSSEEFRNKGSLAQPLLSKLPEIFCCDDLAQTGTGVHCRYALRFLRRNGMATPHSKRGRTKLYRKEPPGDNRSPPPWQEPHGEGLAEKLSPGPAR", "sequence_length": 251, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "24fe4e6735ab32a3c2d7a0e9d9503c604aa9b88bfd52ee4449c99d1ee4ed8546", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O83671.json", "taxon_id": "243276", "uniprot_accession": "O83671", "uniprot_release": "2026_03" } ], "pfam_id": "PF26351", "short_name": "DUF8091", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8092-pf26357.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26357", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8092-pf26357.yaml" } ], "pfam_ids": [ "PF26357" ], "protein_name": "Uncharacterized protein Mb0967", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGRSATIAMVPKRRDAMNRHSGPILSSGFIASSSNSCPANSLRMPSALAAETLSFDDRAVRRSTHHPGGGYPQKHAINLQSGLCPAYANASR", "sequence_length": 92, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "070bae23c51b7d1be0524750cf4af2e8237a68788f8744d9d41c68b533c2da73", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P64764.json", "taxon_id": "233413", "uniprot_accession": "P64764", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8092-pf26357.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26357", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8092-pf26357.yaml" } ], "pfam_ids": [ "PF26357" ], "protein_name": "Uncharacterized protein MT0968.2", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGRSATIAMVPKRRDAMNRHSGPILSSGFIASSSNSCPANSLRMPSALAAETLSFDDRAVRRSTHHPGGGYPQKHAINLQSGLCPAYANASR", "sequence_length": 92, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "070bae23c51b7d1be0524750cf4af2e8237a68788f8744d9d41c68b533c2da73", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKN8.json", "taxon_id": "83331", "uniprot_accession": "P9WKN8", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8092-pf26357.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26357", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8092-pf26357.yaml" } ], "pfam_ids": [ "PF26357" ], "protein_name": "Uncharacterized protein Rv0942", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MGRSATIAMVPKRRDAMNRHSGPILSSGFIASSSNSCPANSLRMPSALAAETLSFDDRAVRRSTHHPGGGYPQKHAINLQSGLCPAYANASR", "sequence_length": 92, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "070bae23c51b7d1be0524750cf4af2e8237a68788f8744d9d41c68b533c2da73", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/P9WKN9.json", "taxon_id": "83332", "uniprot_accession": "P9WKN9", "uniprot_release": "2026_03" } ], "pfam_id": "PF26357", "short_name": "DUF8092", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26362", "short_name": "DUF8093", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 3, "discovery_scanned": true, "example_count": 3, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8094-pf26366.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26366", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8094-pf26366.yaml" } ], "pfam_ids": [ "PF26366" ], "protein_name": "Uncharacterized lipoprotein SAV_5923", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSRDRGARGLRKYGRFALATGAATALSLTASGCVVVHGEREVLPAAKKSEATRALAGFLTAYNKAQKANDRSLDAGRVTGALADIDGAKLEAGHKTAPAGNTDYTPLKLTDAKFAIPAKAGWPRWFVADTASNRDKNRWVLVFTRGSANDVWQVSYLTALAPADVPRFKKDKDGWAEPVTADDAALAVRPQKLGAAYATYLKSGGDTFADGRFTSGLRAGRKKNASKPGLARQYMDEPLNSGDHAPLGLRTTDGGALVFFVTHHYEKQTAAQGVNITVNDPNIKALMTGDPKQSLTMEFVSNQAVLDPAKGSGDQRVTFLSKVAGLTAAKGE", "sequence_length": 332, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "36a6d8497322b73e26359ddab861c9c4af39466e94452b20a625f2dfeee95216", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q82AY2.json", "taxon_id": "227882", "uniprot_accession": "Q82AY2", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8094-pf26366.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26366", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8094-pf26366.yaml" } ], "pfam_ids": [ "PF26366" ], "protein_name": "Uncharacterized lipoprotein SCO6871", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MESPIRTARRTLPLLIGATCLVLALTGCAGEDGPAQARPTPSASTSPKQAPALSAAQARDVITRYSKINNEANADLDRRQLDTVEDGPLYAMSVSDYTETEGLPAKDREPYKRWSYDLASAKLYIPRLAAGQERWFAAALSSEKGKAPSRLAVFAELPRHKRWEMVSVVDLDSQKLPDVALDREGYATAVPANDNKHLAADANLLRTAVLDNFATGGTNTGTKVFAPTKASKRQIKVHSDAATRFGDKGTSVFDGADNRFTDAYALKTADGGALILFSHTHTQTDAVAHSGLQINPGKDDRAWLHDVPRTSITYTFICNDAATVPAKSQPSRLIGYTCARTNASGPPLPSWTARA", "sequence_length": 355, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "a202e60ef28fe514f52f46e27fd357fdb2b37e9b8a6511a81ea8580487cdcd58", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9L1P4.json", "taxon_id": "100226", "uniprot_accession": "Q9L1P4", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8094-pf26366.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26366", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8094-pf26366.yaml" } ], "pfam_ids": [ "PF26366" ], "protein_name": "Uncharacterized lipoprotein SCO2278", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MSQDRGPRRPRRLEKCALISASATVLSLTASGCVVVHGEREVLPSATRAEAAKALERFTTAYNKADKAYDASLDADHTTGALAAIDSARLKAGAANHPDGNPAHEPLELTDAKFTIPKKAGWPRWFVADTKANKGGTARWLLVFTRDGLEETWEAAYLTLVAPGKVPEFKTDQDGWAEAVPANATDVSVPPAGLSKDYTTYLQDGGKTFADGVHTSSWRALREKRSTRPGLVTQYIDEPLTNGDYAPLALRTEDGGALVFFTSRHFEKQTAARGTSVPTPNKDVLALTDGEIKQSLTMEFVSNEVALDPADGQVSVLGRVQGLTSGKGE", "sequence_length": 329, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "157280a92ad12cb14993bd117d99368d83f51aa1528a141bcd7fe041666dafa1", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q9RKQ0.json", "taxon_id": "100226", "uniprot_accession": "Q9RKQ0", "uniprot_release": "2026_03" } ], "pfam_id": "PF26366", "short_name": "DUF8094", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pasteurella multocida (strain Pm70)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8095-pf26367.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26367", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8095-pf26367.yaml" } ], "pfam_ids": [ "PF26367" ], "protein_name": "Uncharacterized lipoprotein PM1509", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MKQKYLFIASMALAGCGSMSESNKYWIQYKDIDQSVKEVSFWSREQFHSPSDVKGTVYQRDNLTHLATSTPLGEIYHIYDVNHIPMNVIFLDTKTQRSLNPQNAQDMAQLSKATQFDFYEFGKGRIAHAVFSAKTGLCQDFKSKRGVALKMATNYYTDASYKGYYVSVIHAIIRHNGQHTDFAYTPAFSIADTKALAMTQALEKQDGERVAQMNLKEKVTLLTNIVCQ", "sequence_length": 228, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "5716c90c38470b362fbc7dc57182e83dffa8589ebd4926308407745d856bfcf2", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CKU6.json", "taxon_id": "272843", "uniprot_accession": "Q9CKU6", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Pasteurella multocida (strain Pm70)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8095-pf26367.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26367", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8095-pf26367.yaml" } ], "pfam_ids": [ "PF26367" ], "protein_name": "Uncharacterized protein PM0015", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRFNVSFLLSLLLPTLAFAESWSIRISEDEVSRTYGYHDTVESEHTMPLLESSPKSEKNTKVTYVNRDFTRQLNPSADEQDAKALGSSIEFEVFQINETKSSHTIFESGAGICQGFHSRLGVEVTDATTYYVIPVNKEEYYTNIATATVLSNEDSKNMQYVPVFYIQNPELAKKVQDEENKKGKNLASKNIENRKTILSHVICRKVI", "sequence_length": 207, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "4b20b7df2bf405bb2ea51cac9305c75104c8f3c58aca1286b0dda2415457d9c5", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9CPM2.json", "taxon_id": "272843", "uniprot_accession": "Q9CPM2", "uniprot_release": "2026_03" } ], "pfam_id": "PF26367", "short_name": "DUF8095", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 2, "discovery_scanned": true, "example_count": 2, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf8096-ipr058409.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR058409", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf8096-ipr058409.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8096-pf26372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8096-pf26372.yaml" } ], "pfam_ids": [ "PF26372" ], "protein_name": "Uncharacterized protein YjzI", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "METKKEEYETKGYDTSIVYEFNEYPDARSGRCDNCDYTLFKSSVKGGKFLRECRRCGMKKNI", "sequence_length": 62, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "0935aff4461aeac3d25494d6a0eab9bb5713f362c2cc0d1a4840493d11c7352a", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0H3Z3.json", "taxon_id": "224308", "uniprot_accession": "C0H3Z3", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Bacillus subtilis (strain 168)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf8096-ipr058409.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR058409", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf8096-ipr058409.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8096-pf26372.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26372", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8096-pf26372.yaml" } ], "pfam_ids": [ "PF26372" ], "protein_name": "Uncharacterized protein YoyH", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEEKYETNGYDTSIVYDYKEYPDVKYGRCDNCDYTLFKSSVKSGIFLRECRRCGMKKSI", "sequence_length": 59, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "2c57fac8a1fd2f336760f6b4d01356e0bae8e14ac91b877371c475d4dc9c7d87", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/C0H437.json", "taxon_id": "224308", "uniprot_accession": "C0H437", "uniprot_release": "2026_03" } ], "pfam_id": "PF26372", "short_name": "DUF8096", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26383", "short_name": "DUF6079_2nd", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26384", "short_name": "DUF6079_3rd", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26385", "short_name": "DUF6079_4th", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26387", "short_name": "DUF6079_5th", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], 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"data/traits/sequence/domain/pfam/duf8179-pf26548.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26548", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8179-pf26548.yaml" } ], "pfam_ids": [ "PF26548" ], "protein_name": "UPF0288 protein MJ1412", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MAKVIVNGKEKVGETLREVIKDEYYNEGANIVIIKGVKREAEKIPKKFLIKTTKGNITIAITENNETAKFFINNYKDFVKKLRWVSGMDVAFGSTTIDLEISTEPKEFKKWDVVLSISGLDKDEGHIVFIKKKTEGVYGLKDPKIGIVVGGKWVIDRLEVGDKIIDIEPIREEKEAVDYLVTTDLDLKLEDGWRIFTYFTAEFDGTPSAVEHCLALMEDGIFEITENTNTYVADCRLQTLKIEEGNLIDRERGFITVRNYGVGEGKVYIYRESRSSSLSHTVVGRVKEGIELIDFSDSGVLSVKXVPERLCAIGLTIEEAEEMFKKYNIEVEKEGDLENAIVVEQEPEYTLDVLKEKKVKIRGLDKNKIIVIELFEDKAPITAWYFRKTTGLTTKRVGKLHVYFKHKDIVMFKGNPEYAKGLLPENIPTDKVEPCSIGVTNMVSRYKGMIGVRLGESDKFGPTGESFEKTNIVGGIVENAEYLKNVKTGDDVYVLLKK", "sequence_length": 498, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "249f32ec9954a6ebc3a5a1f4c951e2b562c6f3a21a93a712e13d73da9ad9e269", "sequence_version": 2, "source_url": "https://rest.uniprot.org/uniprotkb/Q58807.json", "taxon_id": "243232", "uniprot_accession": "Q58807", "uniprot_release": "2026_03" }, { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8179-pf26548.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26548", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8179-pf26548.yaml" } ], "pfam_ids": [ "PF03793", "PF26548" ], "protein_name": "UPF0288 protein MK0796", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MRVYVDGEPVDVPEEATVRDALEAAGVSVPEDVTIAVFKGEQKVERETDRLRIMLETGDEELSLTVAVEDERMSEVCEELPGASVSWTTRDEVGLGPVDVSDLEFHTRRGVEVPPYTAILILPTNDPSEAYFLITKRRMAVEYICTDIHGRVTAGRELVDELRGGERVTHVEPVVERATERVVSRVTLDDGLEAGDRIITRVEIELEKNAPVSAEHLLNTLEMEEGRLRIKFRTDTFTSIEPRPFYDLPEENVDMRERGVVTVRNRGVDEGVVYVYRRDRTPVESHNVVGRVRRGMELLDVVAEGDRVLVETDPPRVNFVGLTVDEARELAEEFDVELEVNGDGDVVVDQEPRETLNVLKERKVRVEVVPEDEVIEIELYEDDAPRSVEYFRRVTKMLDRPVGRLKVHFAYADLGMIVFEGNEKLGKKLPPENNPKDRVEAGVLGVTNQAKPHAGLIGVRLEDSEEYGPTGETFEGTNVIGRVVEGLGRLREMDQSDMGRTVYVREVRGER", "sequence_length": 511, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "68c4f67b1ead1ae2d804f0deb84caf60d566a275fab752cc02f380dd1e48b3f6", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q8TX79.json", "taxon_id": "190192", "uniprot_accession": "Q8TX79", "uniprot_release": "2026_03" } ], "pfam_id": "PF26548", "short_name": "DUF8179", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8180-pf26551.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26551", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8180-pf26551.yaml" } ], "pfam_ids": [ "PF26551" ], "protein_name": "Uncharacterized protein AF_2262", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MEKLPHLLRHWVEHTKEHRERFEEVASKIESTHPEIAKKLKEAAEKYREVEEILKKAVDMVG", "sequence_length": 62, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "ba37e29fee63ac1c1555f817f11cb042f33ecaac7e8a611a455b5287a3c82384", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/O28022.json", "taxon_id": "224325", "uniprot_accession": "O28022", "uniprot_release": "2026_03" } ], "pfam_id": "PF26551", "short_name": "DUF8180", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/duf8181-pf26552.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26552", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf8181-pf26552.yaml" } ], "pfam_ids": [ "PF26552" ], "protein_name": "Uncharacterized protein SSO0428", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MMSEVKFNAYSKAIMEFEDEIKRIKKEIADDSKRLITLSDSYLSELRATAEKSLGDVQKLLNDEKKRQLDEIRNKYISEREKQLEEIRKEAEKNIDKVVNEVIRQLLGVFK", "sequence_length": 111, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "be7c443cbebd61ed1a78e9ec5412eccdebe7939b2d813398faccaf4f5ee32e91", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q9Y8K9.json", "taxon_id": "273057", "uniprot_accession": "Q9Y8K9", "uniprot_release": "2026_03" } ], "pfam_id": "PF26552", "short_name": "DUF8181", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 1, "discovery_scanned": true, "example_count": 1, "examples": [ { "evidence_scope": "FAMILY_MEMBERSHIP_NOT_FUNCTION", "organism": "Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)", "origins": [ { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/domain-of-unknown-function-duf8182-ipr058495.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR058495", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf8182-ipr058495.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/interpro/putative-se-s-carrier-protein-like-ipr021778.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "InterPro:IPR021778", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/putative-se-s-carrier-protein-like-ipr021778.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification", "ptm_own_pfam_record_example" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/domain/pfam/duf8182-pf26554.yaml", "qualification_status": "LEGACY_OR_UNSPECIFIED", "record_id": "Pfam:PF26554", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/duf8182-pf26554.yaml" }, { "cited_uniprot_accession": "", "commit": "70edd6f8458845f7d7783ac4f416df519f5e1de6", "link_basis": [ "canonical_example_family_classification" ], "mech": "ProteinTraitsMech", "path": "data/traits/sequence/family/pfam/se-s-carrier-pf11823.yaml", "qualification_status": "NOT_ASSESSED", "record_id": "Pfam:PF11823", "section": "canonical_examples", "url": "https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/se-s-carrier-pf11823.yaml" } ], "pfam_ids": [ "PF11823", "PF26554" ], "protein_name": "Uncharacterized protein MJ0011", "registry_status": "NOT_IN_REGISTRY", "reviewed": true, "sequence": "MIGKLKNLFKLGKGKKEEKAKKSLEGKGLIIFENTKDAMRAESILKDKYKIKVVAPPPEIREGCDLAIEYELIDEFGIKRELESNDIKPLKFISLNDYSLKPLELIKVKEVDGFILVRCGNMKITIDKEGNIVNISGGGCPDVPYLALKLKGRNIKDIKEEETPKNLGFTLCAYILNKGSSQRGHSWTIIDFEVLSI", "sequence_length": 197, "sequence_origin": "UNIPROT_FETCH", "sequence_sha256": "1e55bdb06550d1b90c1583d2879c8d7e97a9d7becd0667bc1c41f871c518b67c", "sequence_version": 1, "source_url": "https://rest.uniprot.org/uniprotkb/Q60327.json", "taxon_id": "243232", "uniprot_accession": "Q60327", "uniprot_release": "2026_03" } ], "pfam_id": "PF26554", "short_name": "DUF8182", "status": "HAS_SEQUENCE_EXAMPLE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26556", "short_name": "DUF8183", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { "candidate_count": 0, "discovery_scanned": true, "example_count": 0, "examples": [], "pfam_id": "PF26559", "short_name": "DUF8184", "status": "NO_SIBLING_CANDIDATE", "unresolved": [] }, { 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